Your job contains 1 sequence.
>014918
MPDNRQVKSNAVANQSADNIEEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTG
LCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNG
AGPVSFNILGLPMRQDEKSCPYYMRTGSFLPSSGLQYAGSLPTWSLQRAPYLSSRLQGTQ
SYMPLIVSPSQGIVPAPGWNTYMGNIGPLSPTSIAGSNLIYSSRNQGDLGAGAQMHILSA
SSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAIC
SNYSMYGICKFGPTCRFDHPYAGYPINYGLSLPPLSILDSSLMNHQAISATHSIETSPDA
SSKIPNWVQNSDAVSVQHQNPDMKNSTTKNSDDSSKVDHPPHSVPNCSEPPHDQSN
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 014918
(416 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2010562 - symbol:AT1G04990 species:3702 "Arabi... 830 8.2e-83 1
TAIR|locus:2171407 - symbol:ZFN3 "zinc finger nuclease 3"... 596 5.1e-58 1
TAIR|locus:2043368 - symbol:AT2G47850 species:3702 "Arabi... 523 2.8e-50 1
TAIR|locus:2075477 - symbol:ZFN1 "zinc finger protein 1" ... 490 8.8e-47 1
TAIR|locus:2182988 - symbol:AT5G18550 species:3702 "Arabi... 488 1.4e-46 1
TAIR|locus:2081066 - symbol:AT3G06410 species:3702 "Arabi... 487 1.8e-46 1
TAIR|locus:2087775 - symbol:HUA1 "ENHANCER OF AG-4 1" spe... 438 2.8e-41 1
TAIR|locus:2101170 - symbol:AT3G48440 species:3702 "Arabi... 393 1.7e-36 1
TAIR|locus:1006230718 - symbol:AT1G48195 species:3702 "Ar... 251 3.5e-21 1
ZFIN|ZDB-GENE-990806-20 - symbol:cth1 "cth1" species:7955... 116 1.2e-08 2
TAIR|locus:2013763 - symbol:AT1G29570 species:3702 "Arabi... 148 1.1e-07 1
UNIPROTKB|D4A905 - symbol:Cpsf4 "Cleavage and polyadenyla... 109 4.1e-07 2
UNIPROTKB|C9K0K2 - symbol:CPSF4 "Cleavage and polyadenyla... 91 7.2e-07 2
UNIPROTKB|F1REX3 - symbol:LOC100518830 "Uncharacterized p... 105 9.1e-07 3
UNIPROTKB|O95639 - symbol:CPSF4 "Cleavage and polyadenyla... 104 1.2e-06 3
UNIPROTKB|E1BV31 - symbol:CPSF4 "Uncharacterized protein"... 108 1.4e-06 2
TAIR|locus:2013758 - symbol:AT1G29560 species:3702 "Arabi... 142 1.6e-06 1
UNIPROTKB|O19137 - symbol:CPSF4 "Cleavage and polyadenyla... 104 2.6e-06 2
RGD|620440 - symbol:Cpsf4 "cleavage and polyadenylation s... 104 2.6e-06 2
UNIPROTKB|J9P398 - symbol:CPSF4 "Uncharacterized protein"... 104 4.0e-06 2
UNIPROTKB|Q66KE3 - symbol:cpsf4 "Cleavage and polyadenyla... 101 1.4e-05 2
UNIPROTKB|Q6DJP7 - symbol:cpsf4 "Cleavage and polyadenyla... 101 1.4e-05 2
UNIPROTKB|I3LCK9 - symbol:LOC100738395 "Uncharacterized p... 104 2.0e-05 3
POMBASE|SPAC227.08c - symbol:yth1 "mRNA cleavage and poly... 105 2.2e-05 2
UNIPROTKB|B7Z7B0 - symbol:CPSF4 "Cleavage and polyadenyla... 104 5.7e-05 2
WB|WBGene00013319 - symbol:ccch-5 species:6239 "Caenorhab... 118 6.6e-05 1
WB|WBGene00009537 - symbol:ccch-2 species:6239 "Caenorhab... 113 0.00019 1
WB|WBGene00013797 - symbol:Y116A8C.20 species:6239 "Caeno... 114 0.00021 1
UNIPROTKB|H9KVA5 - symbol:CPSF4L "Putative cleavage and p... 91 0.00022 2
UNIPROTKB|C9JEV9 - symbol:CPSF4 "Cleavage and polyadenyla... 113 0.00033 1
MGI|MGI:1861602 - symbol:Cpsf4 "cleavage and polyadenylat... 113 0.00033 1
UNIPROTKB|E2RBK7 - symbol:CPSF4 "Uncharacterized protein"... 113 0.00034 1
UNIPROTKB|F1LWJ4 - symbol:F1LWJ4 "Uncharacterized protein... 91 0.00043 2
WB|WBGene00013794 - symbol:dct-13 species:6239 "Caenorhab... 110 0.00068 1
DICTYBASE|DDB_G0270148 - symbol:cpsf4 "cleavage and polya... 90 0.00071 2
ZFIN|ZDB-GENE-990415-180 - symbol:cpsf4 "cleavage and pol... 92 0.00080 2
UNIPROTKB|E2RBM0 - symbol:CPSF4 "Uncharacterized protein"... 91 0.00088 2
>TAIR|locus:2010562 [details] [associations]
symbol:AT1G04990 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0007623 "circadian rhythm" evidence=RCA] InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50103 SMART:SM00356 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0003723 GO:GO:0090305 EMBL:AC004809
GO:GO:0004518 HOGENOM:HOG000237733 EMBL:AY048253 EMBL:AY113065
IPI:IPI00522113 PIR:F86183 RefSeq:NP_563725.1 RefSeq:NP_973759.1
UniGene:At.21743 ProteinModelPortal:Q94AD9 SMR:Q94AD9 PaxDb:Q94AD9
PRIDE:Q94AD9 EnsemblPlants:AT1G04990.1 EnsemblPlants:AT1G04990.2
GeneID:839351 KEGG:ath:AT1G04990 TAIR:At1g04990 eggNOG:NOG290936
InParanoid:Q94AD9 OMA:THQRISP PhylomeDB:Q94AD9
ProtClustDB:CLSN2687681 Genevestigator:Q94AD9 GermOnline:AT1G04990
Uniprot:Q94AD9
Length = 404
Score = 830 (297.2 bits), Expect = 8.2e-83, P = 8.2e-83
Identities = 179/409 (43%), Positives = 237/409 (57%)
Query: 1 MPDNRQVKSNAVANQSADNIEEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTG 60
M D + V+S+ V+ +S+D IE+A ++K+++ GV + +PYP RPGE DC FY RTG
Sbjct: 5 MSDTQHVQSSLVSIRSSDKIEDAFRKMKVNET----GVEELNPYPDRPGERDCQFYLRTG 60
Query: 61 LCGYGSNCRFNHPAYAAQG-AQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRN 119
LCGYGS+CR+NHP + Q A Y+EELPER GQPDC Y+LKTG CKYG TCKYHHPKDRN
Sbjct: 61 LCGYGSSCRYNHPTHLPQDVAYYKEELPERIGQPDCEYFLKTGACKYGPTCKYHHPKDRN 120
Query: 120 GAGPVSFNILGLPMRQDEKSCPYYMRTGSFLPSSGLQYAGSLPTWSLQRAPYLSSRLQGT 179
GA PV FN++GLPMR EK CPYY+RTG+ ++ P A +SS
Sbjct: 121 GAQPVMFNVIGLPMRLGEKPCPYYLRTGTCRFGVACKFHHPQPDNGHSTAYGMSSFPAAD 180
Query: 180 QSYMP-LIVSPSQGIVPAPGW-NTYMGNI-----GPLSPTS----IAGSNLIYSSRNQGD 228
Y L + + G +P P +Y+ + G L P +A SN +Y+ +NQ
Sbjct: 181 LRYASGLTMMSTYGTLPRPQVPQSYVPILVSPSQGFLPPQGWAPYMAASNSMYNVKNQPY 240
Query: 229 L-GAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIG 287
G+ A M + A ++ L E DQP+CR++MNTGTCKYG DCK+ HP RI+Q S I
Sbjct: 241 YSGSSASMAMAVALNRGLSESSDQPECRFFMNTGTCKYGDDCKYSHPGVRISQPPPSLIN 300
Query: 288 PLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGYPINYGXXXXXXXXXXXXXMNHQA 347
P LP+RPGQ C N+ YG CKFGP C+FDHP YP HQ
Sbjct: 301 PFVLPARPGQPACGNFRSYGFCKFGPNCKFDHPMLPYP-GLTMATSLPTPFASPVTTHQR 359
Query: 348 ISATHSIETSPDASSKIPNWVQNSDAVSVQHQNPDMKNSTTKN-SDDSS 395
IS T + S S+ P+ + S + + PD N ++ S+D+S
Sbjct: 360 ISPTPNRSDSKSLSNGKPDVKKESS----ETEKPD--NGEVQDLSEDAS 402
Score = 190 (71.9 bits), Expect = 3.4e-12, P = 3.4e-12
Identities = 41/117 (35%), Positives = 63/117 (53%)
Query: 208 PLSPTSIAGSNLIYSSRNQGDL-GAGAQMHILSASSQNL---PERPDQPDCRYYMNTGTC 263
P+S T S+L+ S R+ + A +M + + L P+RP + DC++Y+ TG C
Sbjct: 4 PMSDTQHVQSSLV-SIRSSDKIEDAFRKMKVNETGVEELNPYPDRPGERDCQFYLRTGLC 62
Query: 264 KYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHP 320
YG+ C+++HP + Q A L P R GQ C + G CK+GPTC++ HP
Sbjct: 63 GYGSSCRYNHPTH-LPQDVAYYKEEL--PERIGQPDCEYFLKTGACKYGPTCKYHHP 116
>TAIR|locus:2171407 [details] [associations]
symbol:ZFN3 "zinc finger nuclease 3" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=TAS] [GO:0004518 "nuclease activity" evidence=TAS]
InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103 SMART:SM00356
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 EMBL:AB005242 GO:GO:0004518
HOGENOM:HOG000237733 EMBL:AF138872 EMBL:AY084634 EMBL:AY128342
EMBL:BT000014 EMBL:BX831982 IPI:IPI00516322 IPI:IPI00528450
IPI:IPI00528912 RefSeq:NP_568332.2 RefSeq:NP_851041.1
RefSeq:NP_974790.1 UniGene:At.21711 ProteinModelPortal:Q8L7N8
SMR:Q8L7N8 EnsemblPlants:AT5G16540.1 GeneID:831516
KEGG:ath:AT5G16540 GeneFarm:4900 TAIR:At5g16540 eggNOG:NOG281021
InParanoid:Q8L7N8 OMA:SAGNQGM PhylomeDB:Q8L7N8
ProtClustDB:CLSN2690167 Genevestigator:Q8L7N8 Uniprot:Q8L7N8
Length = 375
Score = 596 (214.9 bits), Expect = 5.1e-58, P = 5.1e-58
Identities = 124/318 (38%), Positives = 180/318 (56%)
Query: 21 EEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHP---AYAA 77
+ A+W++ + + G S YP R GEPDC +Y RTGLC +GS CRFNHP
Sbjct: 19 QNAMWQMNLGSDDTMG--VDGS-YPERHGEPDCAYYIRTGLCRFGSTCRFNHPHDRKLVI 75
Query: 78 QGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGA-GPVSFNILGLPMRQD 136
A+ + E PER GQP+C +YLKTGTCK+G TCK+HHP+++ G G VS N+L P+R +
Sbjct: 76 ATARIKGEYPERIGQPECEFYLKTGTCKFGVTCKFHHPRNKAGIDGSVSVNVLSYPLRPN 135
Query: 137 EKSCPYYMRTGSFLPSSGLQYAGSLPTWSLQ-RAPYLSSRLQGTQSYMPLIVSPSQGIVP 195
E C Y++R G ++ G+ Q ++ L ++G+ Y L Q P
Sbjct: 136 EDDCSYFLRIGQ------CKFGGTCKFNHPQTQSTNLMVSVRGSPVYSALQSLTGQ---P 186
Query: 196 APGWN--TYMGNIGPLS-PTSIAGSNL--IYSSRNQGDLGAGAQMHILSASSQNL-PERP 249
+ W+ +++ N L P+ A + ++SS G + + +N+ PERP
Sbjct: 187 SYSWSRTSFVANPPRLQDPSGFASGSQGGLFSSGFHS--GNSVPLGFYALPRENVFPERP 244
Query: 250 DQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGIC 309
QP+C++YM TG CK+G CKFHHP++R + +GLP RPG+ +C YS YGIC
Sbjct: 245 GQPECQFYMKTGDCKFGTVCKFHHPRDRQTPPPDCVLSSVGLPLRPGEPLCVFYSRYGIC 304
Query: 310 KFGPTCRFDHPYAGYPIN 327
KFGP+C+FDHP + N
Sbjct: 305 KFGPSCKFDHPMRVFTYN 322
>TAIR|locus:2043368 [details] [associations]
symbol:AT2G47850 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103 SMART:SM00356
GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 EMBL:AC005309 EMBL:BT030391
EMBL:BT004106 IPI:IPI00519400 PIR:C84920 RefSeq:NP_001078078.1
RefSeq:NP_182306.2 UniGene:At.21006 ProteinModelPortal:Q84W91
SMR:Q84W91 PaxDb:Q84W91 PRIDE:Q84W91 EnsemblPlants:AT2G47850.1
EnsemblPlants:AT2G47850.3 GeneID:819397 KEGG:ath:AT2G47850
TAIR:At2g47850 eggNOG:NOG312935 HOGENOM:HOG000237733
InParanoid:Q84W91 OMA:RYGVACK PhylomeDB:Q84W91
ProtClustDB:CLSN2680305 Genevestigator:Q84W91 GermOnline:AT2G47850
Uniprot:Q84W91
Length = 468
Score = 523 (189.2 bits), Expect = 2.8e-50, P = 2.8e-50
Identities = 119/302 (39%), Positives = 162/302 (53%)
Query: 38 VAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREEL-----PERNGQ 92
V YP R GEP C FY +TG C +G++C+F+HP A G+ L P R G
Sbjct: 81 VRATGQYPERFGEPPCQFYLKTGTCKFGASCKFHHPKNAG-GSMSHVPLNIYGYPVREGD 139
Query: 93 PDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSFNILGLPMRQDEKSCP-YYMRTGSFLP 151
+C YYLKTG CK+G TCK+HHP+ P + P S P +Y S +P
Sbjct: 140 NECSYYLKTGQCKFGITCKFHHPQ------PAGTTVPPPPA-----SAPQFYPSVQSLMP 188
Query: 152 SSGLQYAGSLPTWSLQRAPYL--SSRLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGP- 208
QY G P+ SL+ A L S +QG +Y P++++P G+VP PGW+ Y + P
Sbjct: 189 D---QYGG--PSSSLRVARTLLPGSYMQG--AYGPMLLTP--GVVPIPGWSPYSAPVSPA 239
Query: 209 LSP--------TSIAGSNLIYSSRNQ--GDLGAGAQMHILSASSQNLPERPDQPDCRYYM 258
LSP TS+ G + S+ G + + + Q PERP +P+C+YY+
Sbjct: 240 LSPGAQHAVGATSLYGVTQLTSTTPSLPGVYPSLSSPTGVIQKEQAFPERPGEPECQYYL 299
Query: 259 NTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFD 318
TG CK+G CKFHHP++R+ A + P+GLP RPG C+ Y G CKFG TC+FD
Sbjct: 300 KTGDCKFGTSCKFHHPRDRVPPRANCVLSPIGLPLRPGVQRCTFYVQNGFCKFGSTCKFD 359
Query: 319 HP 320
HP
Sbjct: 360 HP 361
Score = 356 (130.4 bits), Expect = 5.2e-41, Sum P(2) = 5.2e-41
Identities = 95/243 (39%), Positives = 130/243 (53%)
Query: 17 ADN-IEEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHPA- 74
AD ++E++WRL G+ S YP RPG PDC +Y RTG+CGYG+ CR+NHP
Sbjct: 24 ADTGLQESMWRL---------GLGSDS-YPERPGAPDCAYYMRTGVCGYGNRCRYNHPRD 73
Query: 75 YAAQGAQYRE--ELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGA-GPVSFNILGL 131
A+ A R + PER G+P C +YLKTGTCK+G++CK+HHPK+ G+ V NI G
Sbjct: 74 RASVEATVRATGQYPERFGEPPCQFYLKTGTCKFGASCKFHHPKNAGGSMSHVPLNIYGY 133
Query: 132 PMRQDEKSCPYYMRTGSFLPSSGLQYAGSLPTWSLQRAPYLSSR--LQGTQSYMP-LIVS 188
P+R+ + C YY++TG ++ P + P S+ QS MP
Sbjct: 134 PVREGDNECSYYLKTGQCKFGITCKFHHPQPAGTTVPPPPASAPQFYPSVQSLMPDQYGG 193
Query: 189 PSQGIVPA----PGWNTYM-GNIGP--LSP--TSIAGSNLIYSSRNQGDLGAGAQMHILS 239
PS + A PG +YM G GP L+P I G + YS+ L GAQ H +
Sbjct: 194 PSSSLRVARTLLPG--SYMQGAYGPMLLTPGVVPIPGWSP-YSAPVSPALSPGAQ-HAVG 249
Query: 240 ASS 242
A+S
Sbjct: 250 ATS 252
Score = 211 (79.3 bits), Expect = 2.0e-14, P = 2.0e-14
Identities = 40/94 (42%), Positives = 51/94 (54%)
Query: 228 DLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIG 287
D G M L S + PERP PDC YYM TG C YG C+++HP++R S + +
Sbjct: 25 DTGLQESMWRLGLGSDSYPERPGAPDCAYYMRTGVCGYGNRCRYNHPRDRA--SVEATVR 82
Query: 288 PLG-LPSRPGQAICSNYSMYGICKFGPTCRFDHP 320
G P R G+ C Y G CKFG +C+F HP
Sbjct: 83 ATGQYPERFGEPPCQFYLKTGTCKFGASCKFHHP 116
Score = 190 (71.9 bits), Expect = 4.9e-12, P = 4.9e-12
Identities = 36/102 (35%), Positives = 56/102 (54%)
Query: 36 GGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHPAYA----AQGAQYREELPERNG 91
G + + +P RPGEP+C +Y +TG C +G++C+F+HP A LP R G
Sbjct: 278 GVIQKEQAFPERPGEPECQYYLKTGDCKFGTSCKFHHPRDRVPPRANCVLSPIGLPLRPG 337
Query: 92 QPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSFNILGLPM 133
C +Y++ G CK+GSTCK+ HP P + ++ P+
Sbjct: 338 VQRCTFYVQNGFCKFGSTCKFDHPMGTIRYNPSASSLADAPV 379
Score = 96 (38.9 bits), Expect = 5.2e-41, Sum P(2) = 5.2e-41
Identities = 18/43 (41%), Positives = 26/43 (60%)
Query: 245 LPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQS-AASNI 286
LP RP C +Y+ G CK+G+ CKF HP I + +AS++
Sbjct: 332 LPLRPGVQRCTFYVQNGFCKFGSTCKFDHPMGTIRYNPSASSL 374
>TAIR|locus:2075477 [details] [associations]
symbol:ZFN1 "zinc finger protein 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=TAS] [GO:0004518 "nuclease activity" evidence=TAS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0010313 "phytochrome
binding" evidence=IPI] [GO:0017148 "negative regulation of
translation" evidence=IMP] [GO:0048027 "mRNA 5'-UTR binding"
evidence=IPI] InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103
SMART:SM00356 GO:GO:0005829 GO:GO:0005634 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0017148 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0048027 GO:GO:0004518 HOGENOM:HOG000237733
EMBL:AF138743 EMBL:AC018363 EMBL:AK117978 EMBL:BT025966
IPI:IPI00539955 PIR:T48874 RefSeq:NP_566183.1 UniGene:At.23706
ProteinModelPortal:Q8GXX7 SMR:Q8GXX7 STRING:Q8GXX7 PaxDb:Q8GXX7
PRIDE:Q8GXX7 EnsemblPlants:AT3G02830.1 GeneID:821230
KEGG:ath:AT3G02830 GeneFarm:4898 TAIR:At3g02830 eggNOG:NOG329662
InParanoid:Q8GXX7 OMA:SSDDQQR PhylomeDB:Q8GXX7
ProtClustDB:CLSN2917075 Genevestigator:Q8GXX7 GermOnline:AT3G02830
Uniprot:Q8GXX7
Length = 397
Score = 490 (177.5 bits), Expect = 8.8e-47, P = 8.8e-47
Identities = 124/321 (38%), Positives = 167/321 (52%)
Query: 21 EEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHPA---YAA 77
++A+W++ + ++ + YP RPGEPDC +Y RTGLC +GS CRFNHP
Sbjct: 18 QDAMWQMNLSSDE----TMETGSYPERPGEPDCSYYIRTGLCRFGSTCRFNHPRDRELVI 73
Query: 78 QGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNG-AGPVSFNILGLPMRQD 136
A+ R E PER GQP+C YYLKTGTCK+G TCK+HHP+++ G AG VS N+LG P+R +
Sbjct: 74 ATARMRGEYPERIGQPECEYYLKTGTCKFGVTCKFHHPRNKAGIAGRVSLNMLGYPLRSN 133
Query: 137 EKSCPYYMRTG--SFLPSSGLQYAGSLPT-------------WSLQRAPYLSS-RLQGTQ 180
E C Y++RTG F + + PT WS RA +++S R Q
Sbjct: 134 EVDCAYFLRTGHCKFGGTCKFNHPQPQPTNMMVPTSGQQSYPWS--RASFIASPRWQDPS 191
Query: 181 SYMPLIVSPSQGIVPAPGWNTYMGNIGPLSPTSIAGSNLIYSSRNQGD-LGAGAQMHILS 239
SY LI+ P QG+VP GWN Y G +G +SP+ G++ Y + Q + + +G+Q S
Sbjct: 192 SYASLIM-P-QGVVPVQGWNPYSGQLGSVSPSG-TGNDQNYRNLQQNETIESGSQSQG-S 247
Query: 240 ASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAI 299
S N P P YY P+E + P RPGQ
Sbjct: 248 FSGYN-PGS-SVPLGGYYAL--------------PRENV------------FPERPGQPE 279
Query: 300 CSNYSMYGICKFGPTCRFDHP 320
C Y G CKFG C+F HP
Sbjct: 280 CQFYMKTGDCKFGTVCKFHHP 300
Score = 447 (162.4 bits), Expect = 3.2e-42, P = 3.2e-42
Identities = 112/301 (37%), Positives = 160/301 (53%)
Query: 44 YPARPGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREEL-----PERNGQPDCGYY 98
YP R G+P+C +Y +TG C +G C+F+HP A G R L P R+ + DC Y+
Sbjct: 82 YPERIGQPECEYYLKTGTCKFGVTCKFHHPRNKA-GIAGRVSLNMLGYPLRSNEVDCAYF 140
Query: 99 LKTGTCKYGSTCKYHHPKDRNGAGPVSFNILGLPMRQDEKSCPYYMRTGSFLPSSGLQYA 158
L+TG CK+G TCK++HP+ + P T +P+SG Q
Sbjct: 141 LRTGHCKFGGTCKFNHPQPQ----------------------P----TNMMVPTSGQQ-- 172
Query: 159 GSLPTWSLQRAPYLSS-RLQGTQSYMPLI----VSPSQGIVPAPGWNTYMGNIGPLSP-- 211
S P WS RA +++S R Q SY LI V P QG P G +G++ P
Sbjct: 173 -SYP-WS--RASFIASPRWQDPSSYASLIMPQGVVPVQGWNPYSG---QLGSVSPSGTGN 225
Query: 212 ----TSIAGSNLIYS-SRNQGDLGA---GAQMHI---LSASSQNL-PERPDQPDCRYYMN 259
++ + I S S++QG G+ + + + +N+ PERP QP+C++YM
Sbjct: 226 DQNYRNLQQNETIESGSQSQGSFSGYNPGSSVPLGGYYALPRENVFPERPGQPECQFYMK 285
Query: 260 TGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDH 319
TG CK+G CKFHHP++R A + +GLP RPG+ +C Y+ YGICKFGP+C+FDH
Sbjct: 286 TGDCKFGTVCKFHHPRDRQAPPPDCLLSSIGLPLRPGEPLCVFYTRYGICKFGPSCKFDH 345
Query: 320 P 320
P
Sbjct: 346 P 346
>TAIR|locus:2182988 [details] [associations]
symbol:AT5G18550 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=RCA] InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103
SMART:SM00356 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 eggNOG:NOG312935
HOGENOM:HOG000237733 ProtClustDB:CLSN2681554 EMBL:AC069328
EMBL:BT010886 EMBL:AK230175 IPI:IPI00533261 RefSeq:NP_197356.2
UniGene:At.22535 ProteinModelPortal:Q6NPN3 SMR:Q6NPN3 STRING:Q6NPN3
PaxDb:Q6NPN3 PRIDE:Q6NPN3 EnsemblPlants:AT5G18550.1 GeneID:831973
KEGG:ath:AT5G18550 TAIR:At5g18550 InParanoid:Q6NPN3 OMA:GSQPCAY
PhylomeDB:Q6NPN3 Genevestigator:Q6NPN3 GermOnline:AT5G18550
Uniprot:Q6NPN3
Length = 465
Score = 488 (176.8 bits), Expect = 1.4e-46, P = 1.4e-46
Identities = 105/309 (33%), Positives = 157/309 (50%)
Query: 35 GGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREE------LPE 88
GG +A +P R G+P C + RTG C +G++C+++HP G P
Sbjct: 85 GGLRTEAGEFPERMGQPVCQHFMRTGTCKFGASCKYHHPRQGGGGDSVTPVSLNYMGFPL 144
Query: 89 RNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSFNILGLPMRQDEKSCP--YYMRT 146
R G+ +C Y+++TG CK+GSTC+YHHP P +Q + P Y
Sbjct: 145 RPGEKECSYFMRTGQCKFGSTCRYHHPVPPGVQAPSQ------QQQQQLSAGPTMYPSLQ 198
Query: 147 GSFLPSSGLQYAGSLPTWSLQRAPYLSSRLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNI 206
+PSS QY L L Y+ Q Y +++ P G+VP GWN Y ++
Sbjct: 199 SQTVPSSQ-QYGVVLARPQLLPGSYV----QSPYGYGQMVLPP--GMVPYSGWNPYQASV 251
Query: 207 GPL-SPTS--IAGSNLIYS----SRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMN 259
+ SP + G++ +Y S + +G +S Q P+RP+QP+C+Y+M
Sbjct: 252 SAMPSPGTQPSMGTSSVYGITPLSPSAPAYQSGPSSTGVSNKEQTFPQRPEQPECQYFMR 311
Query: 260 TGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDH 319
TG CK+G C+FHHP E A AS + +GLP RPG C++++ +GICKFGP C+FDH
Sbjct: 312 TGDCKFGTSCRFHHPMEA-ASPEASTLSHIGLPLRPGAVPCTHFAQHGICKFGPACKFDH 370
Query: 320 PYAGYPINY 328
++Y
Sbjct: 371 SLGSSSLSY 379
Score = 433 (157.5 bits), Expect = 9.6e-41, P = 9.6e-41
Identities = 122/336 (36%), Positives = 159/336 (47%)
Query: 3 DNRQVKSNAVANQSADN-IEEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTGL 61
++R S+ + Q + IE ++WRL + GGG +P RP EPDC++Y RTG+
Sbjct: 11 ESRSDPSHEWSAQGTETGIEASMWRLGLRGG--GGG---GETFPERPDEPDCIYYLRTGV 65
Query: 62 CGYGSNCRFNHPAYAAQ--GAQYRE--ELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKD 117
CGYGS CRFNHP A G E E PER GQP C ++++TGTCK+G++CKYHHP+
Sbjct: 66 CGYGSRCRFNHPRNRAPVLGGLRTEAGEFPERMGQPVCQHFMRTGTCKFGASCKYHHPRQ 125
Query: 118 RNGAG---PVSFNILGLPMRQDEKSCPYYMRTGSFLPSSGLQYAGSLPTWSLQRAPYLSS 174
G PVS N +G P+R EK C Y+MRTG S +Y +P +Q AP S
Sbjct: 126 GGGGDSVTPVSLNYMGFPLRPGEKECSYFMRTGQCKFGSTCRYHHPVPP-GVQ-AP--SQ 181
Query: 175 RLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGPLSPTSIAGSNLIYSSRNQGDLGAGAQ 234
+ Q S P + PS P Y + P + GS + S G +
Sbjct: 182 QQQQQLSAGPTMY-PSLQSQTVPSSQQY--GVVLARPQLLPGS-YVQSPYGYGQMVLPPG 237
Query: 235 MHILS------ASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGP 288
M S AS +P QP M T + YG P QS S+ G
Sbjct: 238 MVPYSGWNPYQASVSAMPSPGTQPS----MGTSSV-YGITPL--SPSAPAYQSGPSSTGV 290
Query: 289 LG----LPSRPGQAICSNYSMYGICKFGPTCRFDHP 320
P RP Q C + G CKFG +CRF HP
Sbjct: 291 SNKEQTFPQRPEQPECQYFMRTGDCKFGTSCRFHHP 326
Score = 215 (80.7 bits), Expect = 7.0e-15, P = 7.0e-15
Identities = 34/81 (41%), Positives = 47/81 (58%)
Query: 243 QNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSN 302
+ PERPD+PDC YY+ TG C YG+ C+F+HP+ R P R GQ +C +
Sbjct: 46 ETFPERPDEPDCIYYLRTGVCGYGSRCRFNHPRNRAPVLGGLRTEAGEFPERMGQPVCQH 105
Query: 303 YSMYGICKFGPTCRFDHPYAG 323
+ G CKFG +C++ HP G
Sbjct: 106 FMRTGTCKFGASCKYHHPRQG 126
Score = 162 (62.1 bits), Expect = 6.8e-09, P = 6.8e-09
Identities = 33/107 (30%), Positives = 59/107 (55%)
Query: 73 PAY----AAQGAQYREE-LPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSFN 127
PAY ++ G +E+ P+R QP+C Y+++TG CK+G++C++HHP + + +
Sbjct: 279 PAYQSGPSSTGVSNKEQTFPQRPEQPECQYFMRTGDCKFGTSCRFHHPMEAASPEASTLS 338
Query: 128 ILGLPMRQDEKSCPYYMRTGSFLPSSGLQYAGSLPTWSLQRAPYLSS 174
+GLP+R C ++ + G ++ SL + SL +P SS
Sbjct: 339 HIGLPLRPGAVPCTHFAQHGICKFGPACKFDHSLGSSSLSYSPSPSS 385
>TAIR|locus:2081066 [details] [associations]
symbol:AT3G06410 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=RCA] InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103
SMART:SM00356 GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 EMBL:AC011623
eggNOG:NOG312935 HOGENOM:HOG000237733 EMBL:AK230312 EMBL:AK230438
IPI:IPI00535086 RefSeq:NP_187292.2 UniGene:At.27771
ProteinModelPortal:Q9SQU4 SMR:Q9SQU4 EnsemblPlants:AT3G06410.1
GeneID:819815 KEGG:ath:AT3G06410 TAIR:At3g06410 InParanoid:Q9SQU4
OMA:SSQQYGL PhylomeDB:Q9SQU4 ProtClustDB:CLSN2681554
Genevestigator:Q9SQU4 GermOnline:AT3G06410 Uniprot:Q9SQU4
Length = 462
Score = 487 (176.5 bits), Expect = 1.8e-46, P = 1.8e-46
Identities = 106/299 (35%), Positives = 153/299 (51%)
Query: 36 GGV-AQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREE------LPE 88
GGV +A P R G P C + RTG C +G++C+++HP G P
Sbjct: 88 GGVRGEAGALPERMGHPVCQHFMRTGTCKFGASCKYHHPRQGGGGGSVAPVSLSYLGYPL 147
Query: 89 RNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSFNILGLPMRQDEKSCPYYMRTGS 148
R G+ +C YYL+TG CK+G TC+++HP GP P Q + Y
Sbjct: 148 RPGEKECSYYLRTGQCKFGLTCRFNHPVPLAVQGPPQQPQQQQPQPQPQLQTIYPTLQSQ 207
Query: 149 FLPSSGLQYAGSLPTWSLQRAPYLSSRLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGP 208
+PSS QY L S YL S Y P +V P G+VP GWN Y ++
Sbjct: 208 SIPSSQ-QYGLVLTRPSFLTGSYLQS------PYGPPMVLPP-GMVPYSGWNPYQASLSA 259
Query: 209 L-SPTS--IAGSNLIY-----SSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNT 260
+ SP + GS+ IY S G + +++S+ P+RPDQP+C+Y+M T
Sbjct: 260 MPSPGTQPSIGSSSIYGLTPLSPSATAYTGTYQSVPSSNSTSKEFPQRPDQPECQYFMRT 319
Query: 261 GTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDH 319
G CK+G+ C++HHP + + + +GLP RPG A C++++ +GICKFGP C+FDH
Sbjct: 320 GDCKFGSSCRYHHPVDAVPPKTGIVLSSIGLPLRPGVAQCTHFAQHGICKFGPACKFDH 378
Score = 416 (151.5 bits), Expect = 6.1e-39, P = 6.1e-39
Identities = 108/321 (33%), Positives = 146/321 (45%)
Query: 20 IEEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHPAY--AA 77
+E +WRL + GGG ++ YP RP EPDC++Y RTG+CGYGS CRFNHP A
Sbjct: 29 VEAPMWRLGLSGGGGGGGGGES--YPERPDEPDCIYYLRTGVCGYGSRCRFNHPRDRGAV 86
Query: 78 QGAQYREE--LPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAG---PVSFNILGLP 132
G E LPER G P C ++++TGTCK+G++CKYHHP+ G G PVS + LG P
Sbjct: 87 IGGVRGEAGALPERMGHPVCQHFMRTGTCKFGASCKYHHPRQGGGGGSVAPVSLSYLGYP 146
Query: 133 MRQDEKSCPYYMRTGSFLPSSGLQYAGSLPTWSLQRAPYLSSRLQGTQSYMPLIVSPSQG 192
+R EK C YY+RTG ++ +P ++Q P + Q + P+
Sbjct: 147 LRPGEKECSYYLRTGQCKFGLTCRFNHPVPL-AVQGPPQQPQQQQPQPQPQLQTIYPTLQ 205
Query: 193 IVPAPGWNTYMGNIGPLSPTSIAGSNLIYSSRNQGDLGAG----AQMHILSASSQNLPER 248
P Y G + P+ + GS L L G + + AS +P
Sbjct: 206 SQSIPSSQQY-GLV-LTRPSFLTGSYLQSPYGPPMVLPPGMVPYSGWNPYQASLSAMPSP 263
Query: 249 PDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGI 308
QP G + + S SN P RP Q C + G
Sbjct: 264 GTQPSIGSSSIYGLTPLSPSATAYTGTYQSVPS--SNSTSKEFPQRPDQPECQYFMRTGD 321
Query: 309 CKFGPTCRFDHPYAGYPINYG 329
CKFG +CR+ HP P G
Sbjct: 322 CKFGSSCRYHHPVDAVPPKTG 342
>TAIR|locus:2087775 [details] [associations]
symbol:HUA1 "ENHANCER OF AG-4 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IDA;TAS]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0001709 "cell fate
determination" evidence=TAS] [GO:0003723 "RNA binding"
evidence=ISS;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=RCA] InterPro:IPR000571 Pfam:PF00642
PROSITE:PS50103 SMART:SM00356 GO:GO:0005634 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0046872 GO:GO:0003677 GO:GO:0016607
GO:GO:0008270 GO:GO:0006397 GO:GO:0003723 GO:GO:0009908
EMBL:AB024033 GO:GO:0001709 EMBL:AY024357 EMBL:AC069474
EMBL:AK229145 IPI:IPI00536814 RefSeq:NP_187874.2 UniGene:At.5670
ProteinModelPortal:Q941Q3 SMR:Q941Q3 STRING:Q941Q3 PaxDb:Q941Q3
PRIDE:Q941Q3 EnsemblPlants:AT3G12680.1 GeneID:820448
KEGG:ath:AT3G12680 TAIR:At3g12680 eggNOG:NOG250655
HOGENOM:HOG000078745 InParanoid:Q941Q3 OMA:LGAHNTI PhylomeDB:Q941Q3
ProtClustDB:CLSN2690537 Genevestigator:Q941Q3 Uniprot:Q941Q3
Length = 524
Score = 438 (159.2 bits), Expect = 2.8e-41, P = 2.8e-41
Identities = 105/299 (35%), Positives = 151/299 (50%)
Query: 44 YPARPGEPDCLFYRRTGLCGYGSNCRFNHPAY-AAQGAQYREELPERNGQPDCGYYLKTG 102
YP RPGEPDC +Y +T C YGS C+FNHP AA + ++ LPER +P C +Y+KTG
Sbjct: 222 YPERPGEPDCPYYIKTQRCKYGSKCKFNHPREEAAVSVETQDSLPERPSEPMCTFYMKTG 281
Query: 103 TCKYGSTCKYHHPKD---RNGAGPVSFNILGLPMRQDEKSCPYYMRTGSFLPSS-GLQY- 157
CK+G +CK+HHPKD + + + ++ GL D + P+ T + +S GL
Sbjct: 282 KCKFGLSCKFHHPKDIQLPSSSQDIGSSV-GLTSEPDATNNPHVTFTPALYHNSKGLPVR 340
Query: 158 AGS------LPTWSLQRAPYLSSRLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGPLSP 211
+G L T S + +++P + +V + NT N+G ++P
Sbjct: 341 SGEVDCPFYLKTGSCKYGATCRYNHPERTAFIPQAAGVNYSLVSS---NTANLNLGLVTP 397
Query: 212 TSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKF 271
+ Y + Q LG ++SA+ P+RP Q +C YYM TG CK+G CKF
Sbjct: 398 ATS-----FYQTLTQPTLG------VISAT---YPQRPGQSECDYYMKTGECKFGERCKF 443
Query: 272 HHPKERIA-------QSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAG 323
HHP +R++ Q + G P R G C Y G CK+G TC+FDHP G
Sbjct: 444 HHPADRLSAMTKQAPQQPNVKLSLAGYPRREGALNCPYYMKTGTCKYGATCKFDHPPPG 502
Score = 258 (95.9 bits), Expect = 9.3e-20, P = 9.3e-20
Identities = 48/113 (42%), Positives = 66/113 (58%)
Query: 44 YPARPGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQGA--QYRE-------ELPERNGQPD 94
YP R GE DC Y +T C +G +CRF+HP + +G ++E E PER G+PD
Sbjct: 171 YPQRAGEKDCTHYMQTRTCKFGESCRFDHPIWVPEGGIPDWKEAPVVPNEEYPERPGEPD 230
Query: 95 CGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSFNILGLPMRQDEKSCPYYMRTG 147
C YY+KT CKYGS CK++HP++ + + LP R E C +YM+TG
Sbjct: 231 CPYYIKTQRCKYGSKCKFNHPREEAAVSVETQD--SLPERPSEPMCTFYMKTG 281
Score = 216 (81.1 bits), Expect = 7.3e-15, P = 7.3e-15
Identities = 37/79 (46%), Positives = 50/79 (63%)
Query: 242 SQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICS 301
++ PERP +PDC YY+ T CKYG+ CKF+HP+E A S + LP RP + +C+
Sbjct: 219 NEEYPERPGEPDCPYYIKTQRCKYGSKCKFNHPREEAAVSVETQDS---LPERPSEPMCT 275
Query: 302 NYSMYGICKFGPTCRFDHP 320
Y G CKFG +C+F HP
Sbjct: 276 FYMKTGKCKFGLSCKFHHP 294
Score = 209 (78.6 bits), Expect = 4.5e-14, P = 4.5e-14
Identities = 41/90 (45%), Positives = 54/90 (60%)
Query: 37 GVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHPA--------YAAQGAQYREEL-- 86
GV A+ YP RPG+ +C +Y +TG C +G C+F+HPA A Q + L
Sbjct: 411 GVISAT-YPQRPGQSECDYYMKTGECKFGERCKFHHPADRLSAMTKQAPQQPNVKLSLAG 469
Query: 87 -PERNGQPDCGYYLKTGTCKYGSTCKYHHP 115
P R G +C YY+KTGTCKYG+TCK+ HP
Sbjct: 470 YPRREGALNCPYYMKTGTCKYGATCKFDHP 499
Score = 153 (58.9 bits), Expect = 8.3e-08, P = 8.3e-08
Identities = 30/80 (37%), Positives = 42/80 (52%)
Query: 246 PERPDQPDCRYYMNTGTCKYGADCKFHHP----KERIAQSAASNIGPLG-LPSRPGQAIC 300
P+R + DC +YM T TCK+G C+F HP + I + + P P RPG+ C
Sbjct: 172 PQRAGEKDCTHYMQTRTCKFGESCRFDHPIWVPEGGIPDWKEAPVVPNEEYPERPGEPDC 231
Query: 301 SNYSMYGICKFGPTCRFDHP 320
Y CK+G C+F+HP
Sbjct: 232 PYYIKTQRCKYGSKCKFNHP 251
>TAIR|locus:2101170 [details] [associations]
symbol:AT3G48440 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=RCA] InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103
SMART:SM00356 GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 EMBL:AL049659
HOGENOM:HOG000237733 EMBL:BT033139 IPI:IPI00517303 PIR:T06698
RefSeq:NP_190414.1 UniGene:At.50258 ProteinModelPortal:Q9STM4
SMR:Q9STM4 PaxDb:Q9STM4 PRIDE:Q9STM4 EnsemblPlants:AT3G48440.1
GeneID:824003 KEGG:ath:AT3G48440 TAIR:At3g48440 eggNOG:NOG288127
InParanoid:Q9STM4 OMA:PEWNGYQ PhylomeDB:Q9STM4
ProtClustDB:CLSN2719348 Genevestigator:Q9STM4 GermOnline:AT3G48440
Uniprot:Q9STM4
Length = 448
Score = 393 (143.4 bits), Expect = 1.7e-36, P = 1.7e-36
Identities = 98/279 (35%), Positives = 134/279 (48%)
Query: 52 DCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGT--CKY--- 106
DC +Y RTG C YG CRFNH G PE N G L+ G C Y
Sbjct: 163 DCKYYFRTGGCKYGETCRFNH-TIPKSGLA---SAPELNF---LGLPLRPGEVECPYYMR 215
Query: 107 GSTCKYHHPKDRNGAGPVSFNILGLPMRQDEKSCPYYMRTGSFLPSSGLQYAGSLPTWSL 166
+CKY N P + P + + G+F P + Q S +WS
Sbjct: 216 NGSCKYGAECKFNHPDPTTIGGTDSPSFRGNNG----VSIGTFSPKATFQ--ASSTSWSS 269
Query: 167 QRAPYLSSRLQGTQSYMPLIVSPSQGIVPA-PGWNTYMGNI-----GPLSPTSIAGSNLI 220
R + GT ++P+++S + G+ P WN Y ++ G SP++ + L+
Sbjct: 270 PR------HVNGTSPFIPVMLSQTHGVTSQNPEWNGYQASVYSSERGVFSPST---TYLM 320
Query: 221 YSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQ 280
+S + + H + A + PERPDQP+C YYM TG CK+ +CK+HHPK R+ +
Sbjct: 321 NNSSAETSMLLSQYRHQMPA--EEFPERPDQPECSYYMKTGDCKFKFNCKYHHPKNRLPK 378
Query: 281 SAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDH 319
+ GLP RP Q IC+ YS YGICKFGP CRFDH
Sbjct: 379 LPPYALNDKGLPLRPDQNICTYYSRYGICKFGPACRFDH 417
Score = 322 (118.4 bits), Expect = 5.6e-29, P = 5.6e-29
Identities = 98/329 (29%), Positives = 148/329 (44%)
Query: 4 NRQVKSNAVANQSADNIEEAIWRLKIHDNQEGGGVAQA-SPYPARPGEPDCLFYRRTGLC 62
N + SNAV + + EE R + +G ++ + YP RPG DC FY RTG C
Sbjct: 67 NGGLDSNAVVTINQEEEEEEEDR-DGYGYGDGWSENESENVYPVRPGAEDCSFYMRTGSC 125
Query: 63 GYGSNCRFNHPA----YAAQGAQYREELPE--RNGQPDCGYYLKTGTCKYGSTCKYHHPK 116
+GS+C+FNHP A+ + RE+ + + G DC YY +TG CKYG TC+++H
Sbjct: 126 KFGSSCKFNHPLARKFQIARDNKVREKEDDGGKLGLIDCKYYFRTGGCKYGETCRFNHTI 185
Query: 117 DRNG-AGPVSFNILGLPMRQDEKSCPYYMRTGSFLPSSGLQYAGSLPTWSLQRAPYLSSR 175
++G A N LGLP+R E CPYYMR GS + ++ PT ++ S
Sbjct: 186 PKSGLASAPELNFLGLPLRPGEVECPYYMRNGSCKYGAECKFNHPDPT-TIGGTD--SPS 242
Query: 176 LQGTQSYMPLIVSPSQGI-VPAPGWNT--YMGNIGPLSPTSIAGSNLIYSSRNQGDLGAG 232
+G SP + W++ ++ P P ++ ++ + S + + G
Sbjct: 243 FRGNNGVSIGTFSPKATFQASSTSWSSPRHVNGTSPFIPVMLSQTHGVTSQNPEWN---G 299
Query: 233 AQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADC-KFHHPKERIAQSAASNIGPLGL 291
Q + S S + + P Y MN + + ++ H Q A
Sbjct: 300 YQASVYS-SERGV----FSPSTTYLMNNSSAETSMLLSQYRH------QMPAEEF----- 343
Query: 292 PSRPGQAICSNYSMYGICKFGPTCRFDHP 320
P RP Q CS Y G CKF C++ HP
Sbjct: 344 PERPDQPECSYYMKTGDCKFKFNCKYHHP 372
>TAIR|locus:1006230718 [details] [associations]
symbol:AT1G48195 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103 SMART:SM00356
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 EMBL:AC023673 EMBL:BX818039 IPI:IPI00522286
RefSeq:NP_973988.1 UniGene:At.38465 UniGene:At.63148
ProteinModelPortal:Q3ECU8 SMR:Q3ECU8 EnsemblPlants:AT1G48195.1
GeneID:2745816 KEGG:ath:AT1G48195 TAIR:At1g48195 eggNOG:NOG304278
HOGENOM:HOG000107451 InParanoid:Q3ECU8 OMA:AICPHYS PhylomeDB:Q3ECU8
ProtClustDB:CLSN2681286 Genevestigator:Q3ECU8 Uniprot:Q3ECU8
Length = 82
Score = 251 (93.4 bits), Expect = 3.5e-21, P = 3.5e-21
Identities = 40/79 (50%), Positives = 51/79 (64%)
Query: 241 SSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAIC 300
S + PERP +P+C YY+ TG C +CK+HHPK + GLP RPGQAIC
Sbjct: 2 SEEKFPERPGEPECSYYLRTGNCYLKQNCKYHHPKNITPSEPQCTLNDKGLPLRPGQAIC 61
Query: 301 SNYSMYGICKFGPTCRFDH 319
+YS +GIC+ GPTC+FDH
Sbjct: 62 PHYSRFGICRSGPTCKFDH 80
Score = 179 (68.1 bits), Expect = 3.8e-13, P = 3.8e-13
Identities = 31/65 (47%), Positives = 41/65 (63%)
Query: 84 EELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGP-VSFNILGLPMRQDEKSCPY 142
E+ PER G+P+C YYL+TG C CKYHHPK+ + P + N GLP+R + CP+
Sbjct: 4 EKFPERPGEPECSYYLRTGNCYLKQNCKYHHPKNITPSEPQCTLNDKGLPLRPGQAICPH 63
Query: 143 YMRTG 147
Y R G
Sbjct: 64 YSRFG 68
Score = 164 (62.8 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 31/75 (41%), Positives = 42/75 (56%)
Query: 44 YPARPGEPDCLFYRRTGLCGYGSNCRFNHPAYAA----QGAQYREELPERNGQPDCGYYL 99
+P RPGEP+C +Y RTG C NC+++HP Q + LP R GQ C +Y
Sbjct: 6 FPERPGEPECSYYLRTGNCYLKQNCKYHHPKNITPSEPQCTLNDKGLPLRPGQAICPHYS 65
Query: 100 KTGTCKYGSTCKYHH 114
+ G C+ G TCK+ H
Sbjct: 66 RFGICRSGPTCKFDH 80
>ZFIN|ZDB-GENE-990806-20 [details] [associations]
symbol:cth1 "cth1" species:7955 "Danio rerio"
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000571 Pfam:PF00642
PROSITE:PS50103 SMART:SM00356 ZFIN:ZDB-GENE-990806-20 GO:GO:0008270
GO:GO:0003676 HSSP:P22893 GeneTree:ENSGT00530000063262
EMBL:AL954709 EMBL:BC107984 EMBL:AJ249490 IPI:IPI00509714
RefSeq:NP_571014.1 UniGene:Dr.621 SMR:Q9PU62 STRING:Q9PU62
Ensembl:ENSDART00000101601 GeneID:30114 KEGG:dre:30114 CTD:30114
HOGENOM:HOG000153347 HOVERGEN:HBG078993 InParanoid:Q9PU62 KO:K13056
OMA:FTFSSQH NextBio:20806593 Uniprot:Q9PU62
Length = 319
Score = 116 (45.9 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 37/136 (27%), Positives = 48/136 (35%)
Query: 235 MHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPS- 293
+H L P R + P CR + G C +G C F H + A PS
Sbjct: 121 VHNLKEQRPIRPRRRNVP-CRTFRAFGVCPFGNRCHFLHVEGGSESDGAEEEQTWQPPSQ 179
Query: 294 ----RPGQAICSNYSMYGICKFGPTCRFDHPYAGYPINYGXXXXXXXXXXXXXMNHQAIS 349
+P A+C +S +G C +G CRF H G P N +IS
Sbjct: 180 SQEWKPRGALCRTFSAFGFCLYGTRCRFQH---GLPNTIKGHNANHTSWPQQMTNGGSIS 236
Query: 350 ATHSIETSPDASSKIP 365
TSP S P
Sbjct: 237 PISDTCTSPSPPSSSP 252
Score = 84 (34.6 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 23/81 (28%), Positives = 35/81 (43%)
Query: 53 CLFYRRTGLCGYGSNCRFNHPAY----AAQGAQYREELPERNGQPDCGYYLKTGTCKYGS 108
C Y TG C Y C+F H + ++ +Y+ EL C Y G C YG+
Sbjct: 65 CSRYAETGTCKYAERCQFAHGLHDLHVPSRHPKYKTEL--------CRTYHTAGYCVYGT 116
Query: 109 TCKY-HHPKDRNGAGPVSFNI 128
C + H+ K++ P N+
Sbjct: 117 RCLFVHNLKEQRPIRPRRRNV 137
>TAIR|locus:2013763 [details] [associations]
symbol:AT1G29570 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=RCA] [GO:0048445 "carpel morphogenesis" evidence=RCA]
InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103 SMART:SM00356
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 EMBL:AC068667 IPI:IPI00519526 PIR:G86418
RefSeq:NP_174250.1 UniGene:At.51822 EnsemblPlants:AT1G29570.1
GeneID:839834 KEGG:ath:AT1G29570 TAIR:At1g29570 eggNOG:NOG325481
HOGENOM:HOG000107458 OMA:HIMDRNV PhylomeDB:Q9C7P4
ProtClustDB:CLSN2914472 Genevestigator:Q9C7P4 Uniprot:Q9C7P4
Length = 321
Score = 148 (57.2 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 27/53 (50%), Positives = 34/53 (64%)
Query: 40 QASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYR--EELPERN 90
Q+SPYP RPG+ DC FY + GLC Y S+CRFNHP Q R + + +RN
Sbjct: 48 QSSPYPVRPGKKDCQFYLKNGLCRYRSSCRFNHPTQRPQELPVRICKHIMDRN 100
>UNIPROTKB|D4A905 [details] [associations]
symbol:Cpsf4 "Cleavage and polyadenylation-specificity
factor subunit 4" species:10116 "Rattus norvegicus" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR000571 InterPro:IPR001878 Pfam:PF00098
Pfam:PF00642 PROSITE:PS50103 PROSITE:PS50158 SMART:SM00343
SMART:SM00356 RGD:620440 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
Gene3D:4.10.60.10 SUPFAM:SSF57756 GeneTree:ENSGT00390000009627
OMA:PLDQVTC OrthoDB:EOG4KH2VQ IPI:IPI00358639
Ensembl:ENSRNOT00000038958 Uniprot:D4A905
Length = 243
Score = 109 (43.4 bits), Expect = 4.1e-07, Sum P(2) = 4.1e-07
Identities = 27/82 (32%), Positives = 37/82 (45%)
Query: 252 PDCRYYMNTGTCKYGADCKFHH--PKERIAQS-----AASNIGPLGLPSRPGQAICSNYS 304
P+C +Y G C +C F H P+ +I GPL R + IC NY
Sbjct: 94 PECYFYSKFGECS-NKECPFLHIDPESKIKDCPWYDRGFCKHGPLCRHRRTRRVICVNY- 151
Query: 305 MYGICKFGPTCRFDHPYAGYPI 326
+ G C GP+C+F HP P+
Sbjct: 152 LVGFCPEGPSCKFMHPRFELPM 173
Score = 72 (30.4 bits), Expect = 4.1e-07, Sum P(2) = 4.1e-07
Identities = 29/101 (28%), Positives = 44/101 (43%)
Query: 19 NIEEAIWRLKIHDNQEGGGVAQASPYPA--RPGEPDCLFYRRTGLCGYGSNCRFNHPAYA 76
+++ + L I Q+ G AQ P+P + G C F+ + CG GS C F H
Sbjct: 7 SVDHIKFDLAIAVEQQLG--AQPLPFPGMDKSGTAVCEFFLKAA-CGKGSMCPFRH---- 59
Query: 77 AQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKD 117
G E+ C ++L+ G CK G C++ H D
Sbjct: 60 ISG--------EKTVV--CKHWLR-GLCKKGDQCEFLHEYD 89
>UNIPROTKB|C9K0K2 [details] [associations]
symbol:CPSF4 "Cleavage and polyadenylation-specificity
factor subunit 4" species:9606 "Homo sapiens" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103
SMART:SM00356 GO:GO:0008270 GO:GO:0003676 HOGENOM:HOG000212457
HGNC:HGNC:2327 EMBL:AC073063 IPI:IPI01014332
ProteinModelPortal:C9K0K2 SMR:C9K0K2 STRING:C9K0K2
Ensembl:ENST00000412686 ArrayExpress:C9K0K2 Bgee:C9K0K2
Uniprot:C9K0K2
Length = 112
Score = 91 (37.1 bits), Expect = 7.2e-07, Sum P(2) = 7.2e-07
Identities = 23/73 (31%), Positives = 32/73 (43%)
Query: 252 PDCRYYMNTGTCKYGADCKFHH--PKERIAQS-----AASNIGPLGLPSRPGQAICSNYS 304
P+C +Y G C +C F H P+ +I GPL + IC NY
Sbjct: 41 PECYFYSKFGECS-NKECPFLHIDPESKIKDCPWYDRGFCKHGPLCRHRHTRRVICVNY- 98
Query: 305 MYGICKFGPTCRF 317
+ G C GP+C+F
Sbjct: 99 LVGFCPEGPSCKF 111
Score = 51 (23.0 bits), Expect = 7.2e-07, Sum P(2) = 7.2e-07
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 95 CGYYLKTGTCKYGSTCKYHHPKD 117
C ++L+ G CK G C++ H D
Sbjct: 15 CKHWLR-GLCKKGDQCEFLHEYD 36
>UNIPROTKB|F1REX3 [details] [associations]
symbol:LOC100518830 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000571
InterPro:IPR001878 Pfam:PF00098 Pfam:PF00642 PROSITE:PS50103
PROSITE:PS50158 SMART:SM00343 SMART:SM00356 GO:GO:0046872
GO:GO:0008270 GO:GO:0003676 Gene3D:4.10.60.10 SUPFAM:SSF57756
GeneTree:ENSGT00390000009627 KO:K14404 EMBL:FP102617
RefSeq:XP_003124350.1 Ensembl:ENSSSCT00000008355 GeneID:100518830
KEGG:ssc:100518830 OMA:MQDIVAS Uniprot:F1REX3
Length = 269
Score = 105 (42.0 bits), Expect = 9.1e-07, Sum P(3) = 9.1e-07
Identities = 26/82 (31%), Positives = 37/82 (45%)
Query: 252 PDCRYYMNTGTCKYGADCKFHH--PKERIAQ-----SAASNIGPLGLPSRPGQAICSNYS 304
P+C +Y G C +C F H P+ +I + GPL + IC NY
Sbjct: 94 PECYFYSKFGECS-NKECPFLHIDPESKIKDCPWYDARFCKHGPLCRHRHTRRVICVNY- 151
Query: 305 MYGICKFGPTCRFDHPYAGYPI 326
+ G C GP+C+F HP P+
Sbjct: 152 LVGFCPEGPSCKFMHPRFELPM 173
Score = 70 (29.7 bits), Expect = 9.1e-07, Sum P(3) = 9.1e-07
Identities = 28/101 (27%), Positives = 44/101 (43%)
Query: 19 NIEEAIWRLKIHDNQEGGGVAQASPYPA--RPGEPDCLFYRRTGLCGYGSNCRFNHPAYA 76
+++ + L+I Q+ G AQ P+P + G C F+ + CG G C F H
Sbjct: 7 SVDHIKFDLEIAVEQQLG--AQPLPFPGMDKSGAAVCEFFLKAA-CGKGGMCPFRH---- 59
Query: 77 AQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKD 117
G E+ C ++L+ G CK G C++ H D
Sbjct: 60 ISG--------EKTVV--CKHWLR-GLCKKGDQCEFLHEYD 89
Score = 39 (18.8 bits), Expect = 9.1e-07, Sum P(3) = 9.1e-07
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 398 DHPPHSVPNCSEPPHDQSN 416
+ PP +P ++PP QSN
Sbjct: 177 EQPP--LPQQTQPPAKQSN 193
>UNIPROTKB|O95639 [details] [associations]
symbol:CPSF4 "Cleavage and polyadenylation specificity
factor subunit 4" species:9606 "Homo sapiens" [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005847 "mRNA
cleavage and polyadenylation specificity factor complex"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0019048
"virus-host interaction" evidence=TAS] [GO:0019054 "modulation by
virus of host cellular process" evidence=TAS] [GO:0019058 "viral
infectious cycle" evidence=TAS] [GO:0046778 "modification by virus
of host mRNA processing" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005739
"mitochondrion" evidence=IDA] InterPro:IPR000571 InterPro:IPR001878
Pfam:PF00098 Pfam:PF00642 PROSITE:PS50103 PROSITE:PS50158
SMART:SM00343 SMART:SM00356 GO:GO:0005739 Reactome:REACT_116125
GO:GO:0046872 GO:GO:0008270 GO:GO:0006397 GO:GO:0003723
EMBL:CH236956 EMBL:CH471091 GO:GO:0019058 Gene3D:4.10.60.10
SUPFAM:SSF57756 eggNOG:COG5084 GO:GO:0005847 HOGENOM:HOG000212457
HOVERGEN:HBG051108 CTD:10898 KO:K14404 OMA:PLDQVTC
OrthoDB:EOG4KH2VQ EMBL:U79569 EMBL:CR542161 EMBL:EF191081
EMBL:BC003101 EMBL:BC050738 IPI:IPI00009137 IPI:IPI00029707
IPI:IPI00375469 RefSeq:NP_001075028.1 RefSeq:NP_006684.1
UniGene:Hs.489287 PDB:2D9N PDB:2RHK PDBsum:2D9N PDBsum:2RHK
ProteinModelPortal:O95639 SMR:O95639 DIP:DIP-48675N IntAct:O95639
MINT:MINT-1429837 STRING:O95639 PhosphoSite:O95639 PaxDb:O95639
PRIDE:O95639 DNASU:10898 Ensembl:ENST00000292476
Ensembl:ENST00000436336 GeneID:10898 KEGG:hsa:10898 UCSC:uc003uqi.3
UCSC:uc003uqj.3 UCSC:uc003uqk.3 GeneCards:GC07P099036
HGNC:HGNC:2327 HPA:HPA049094 MIM:603052 neXtProt:NX_O95639
PharmGKB:PA26844 InParanoid:O95639 PhylomeDB:O95639
EvolutionaryTrace:O95639 GenomeRNAi:10898 NextBio:41385
ArrayExpress:O95639 Bgee:O95639 CleanEx:HS_CPSF4
Genevestigator:O95639 GermOnline:ENSG00000160917 GO:GO:0046778
Uniprot:O95639
Length = 269
Score = 104 (41.7 bits), Expect = 1.2e-06, Sum P(3) = 1.2e-06
Identities = 26/82 (31%), Positives = 36/82 (43%)
Query: 252 PDCRYYMNTGTCKYGADCKFHH--PKERIAQS-----AASNIGPLGLPSRPGQAICSNYS 304
P+C +Y G C +C F H P+ +I GPL + IC NY
Sbjct: 94 PECYFYSKFGECS-NKECPFLHIDPESKIKDCPWYDRGFCKHGPLCRHRHTRRVICVNY- 151
Query: 305 MYGICKFGPTCRFDHPYAGYPI 326
+ G C GP+C+F HP P+
Sbjct: 152 LVGFCPEGPSCKFMHPRFELPM 173
Score = 70 (29.7 bits), Expect = 1.2e-06, Sum P(3) = 1.2e-06
Identities = 28/101 (27%), Positives = 44/101 (43%)
Query: 19 NIEEAIWRLKIHDNQEGGGVAQASPYPA--RPGEPDCLFYRRTGLCGYGSNCRFNHPAYA 76
+++ + L+I Q+ G AQ P+P + G C F+ + CG G C F H
Sbjct: 7 SVDHIKFDLEIAVEQQLG--AQPLPFPGMDKSGAAVCEFFLKAA-CGKGGMCPFRH---- 59
Query: 77 AQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKD 117
G E+ C ++L+ G CK G C++ H D
Sbjct: 60 ISG--------EKTVV--CKHWLR-GLCKKGDQCEFLHEYD 89
Score = 39 (18.8 bits), Expect = 1.2e-06, Sum P(3) = 1.2e-06
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 398 DHPPHSVPNCSEPPHDQSN 416
+ PP +P ++PP QSN
Sbjct: 177 EQPP--LPQQTQPPAKQSN 193
>UNIPROTKB|E1BV31 [details] [associations]
symbol:CPSF4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=IEA]
InterPro:IPR000571 InterPro:IPR001878 Pfam:PF00098 Pfam:PF00642
PROSITE:PS50103 PROSITE:PS50158 SMART:SM00343 SMART:SM00356
GO:GO:0046872 GO:GO:0008270 GO:GO:0003676 Gene3D:4.10.60.10
SUPFAM:SSF57756 GO:GO:0005847 CTD:10898
GeneTree:ENSGT00390000009627 KO:K14404 OMA:PLDQVTC
EMBL:AADN02023770 IPI:IPI00572429 RefSeq:XP_414800.1
UniGene:Gga.12217 Ensembl:ENSGALT00000007510 GeneID:416494
KEGG:gga:416494 NextBio:20819939 Uniprot:E1BV31
Length = 243
Score = 108 (43.1 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 27/82 (32%), Positives = 36/82 (43%)
Query: 252 PDCRYYMNTGTCKYGADCKFHH--PKERIAQS-----AASNIGPLGLPSRPGQAICSNYS 304
P+C +Y G C +C F H P+ +I GPL + IC NY
Sbjct: 94 PECYFYSKFGECS-NKECPFLHIDPESKIKDCPWYDRGFCKHGPLCRHRHTRRVICVNY- 151
Query: 305 MYGICKFGPTCRFDHPYAGYPI 326
+ G C GPTC+F HP P+
Sbjct: 152 LVGFCPEGPTCKFMHPRFELPM 173
Score = 68 (29.0 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 27/101 (26%), Positives = 44/101 (43%)
Query: 19 NIEEAIWRLKIHDNQEGGGVAQASPYPA--RPGEPDCLFYRRTGLCGYGSNCRFNHPAYA 76
+++ + L++ Q+ G AQ P+P + G C F+ + CG G C F H
Sbjct: 7 SVDHIKFDLELAVEQQLG--AQPLPFPGMDKSGAAVCEFFLKAA-CGKGGMCPFRH---- 59
Query: 77 AQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKD 117
G E+ C ++L+ G CK G C++ H D
Sbjct: 60 ISG--------EKTVV--CKHWLR-GLCKKGDQCEFLHEYD 89
>TAIR|locus:2013758 [details] [associations]
symbol:AT1G29560 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR000571 PROSITE:PS50103 SMART:SM00356
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0008270 GO:GO:0003676
EMBL:AC068667 eggNOG:KOG1677 IPI:IPI00527997 RefSeq:NP_174249.2
UniGene:At.73942 ProteinModelPortal:B3H4U9 PRIDE:B3H4U9
EnsemblPlants:AT1G29560.1 GeneID:839833 KEGG:ath:AT1G29560
TAIR:At1g29560 HOGENOM:HOG000064587 OMA:WRDSESR PhylomeDB:B3H4U9
ProtClustDB:CLSN2682005 Genevestigator:B3H4U9 Uniprot:B3H4U9
Length = 572
Score = 142 (55.0 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 35/84 (41%), Positives = 46/84 (54%)
Query: 45 PAR-PGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGT 103
P R PGE +C R C G +CR+NHP Q +ELP RN C Y+L+ G
Sbjct: 215 PVRWPGE-ECWCLR----CRNGGSCRYNHPT------QLPQELPVRNRLQICRYFLR-GY 262
Query: 104 CKYGSTCKYHHPKDRNGAGPVSFN 127
CK+GS C + H +DR+ A P+ N
Sbjct: 263 CKFGSVCGFQHIRDRDVAEPMYEN 286
>UNIPROTKB|O19137 [details] [associations]
symbol:CPSF4 "Cleavage and polyadenylation specificity
factor subunit 4" species:9913 "Bos taurus" [GO:0005847 "mRNA
cleavage and polyadenylation specificity factor complex"
evidence=ISS] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000571 InterPro:IPR001878 Pfam:PF00098 Pfam:PF00642
PROSITE:PS50103 PROSITE:PS50158 SMART:SM00343 SMART:SM00356
GO:GO:0046872 GO:GO:0008270 GO:GO:0006397 GO:GO:0003723
Gene3D:4.10.60.10 SUPFAM:SSF57756 eggNOG:COG5084 HSSP:P47974
GO:GO:0005847 HOGENOM:HOG000212457 HOVERGEN:HBG051108 EMBL:U96448
IPI:IPI00715166 RefSeq:NP_776367.1 UniGene:Bt.55595
ProteinModelPortal:O19137 SMR:O19137 STRING:O19137
Ensembl:ENSBTAT00000002701 GeneID:280875 KEGG:bta:280875 CTD:10898
GeneTree:ENSGT00390000009627 InParanoid:O19137 KO:K14404
OMA:PLDQVTC OrthoDB:EOG4KH2VQ NextBio:20805014 Uniprot:O19137
Length = 243
Score = 104 (41.7 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 26/82 (31%), Positives = 36/82 (43%)
Query: 252 PDCRYYMNTGTCKYGADCKFHH--PKERIAQS-----AASNIGPLGLPSRPGQAICSNYS 304
P+C +Y G C +C F H P+ +I GPL + IC NY
Sbjct: 94 PECYFYSKFGECS-NKECPFLHIDPESKIKDCPWYDRGFCKHGPLCRHRHTRRVICVNY- 151
Query: 305 MYGICKFGPTCRFDHPYAGYPI 326
+ G C GP+C+F HP P+
Sbjct: 152 LVGFCPEGPSCKFMHPRFELPM 173
Score = 70 (29.7 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 28/101 (27%), Positives = 44/101 (43%)
Query: 19 NIEEAIWRLKIHDNQEGGGVAQASPYPA--RPGEPDCLFYRRTGLCGYGSNCRFNHPAYA 76
+++ + L+I Q+ G AQ P+P + G C F+ + CG G C F H
Sbjct: 7 SVDHIKFDLEIAVEQQLG--AQPLPFPGMDKSGAAVCEFFLKAA-CGKGGMCPFRH---- 59
Query: 77 AQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKD 117
G E+ C ++L+ G CK G C++ H D
Sbjct: 60 ISG--------EKTVV--CKHWLR-GLCKKGDQCEFLHEYD 89
>RGD|620440 [details] [associations]
symbol:Cpsf4 "cleavage and polyadenylation specific factor 4"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005847 "mRNA cleavage and polyadenylation
specificity factor complex" evidence=ISS] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR000571 InterPro:IPR001878 Pfam:PF00098
Pfam:PF00642 PROSITE:PS50103 PROSITE:PS50158 SMART:SM00343
SMART:SM00356 RGD:620440 GO:GO:0046872 GO:GO:0008270 GO:GO:0006397
GO:GO:0003723 Gene3D:4.10.60.10 SUPFAM:SSF57756 eggNOG:COG5084
HSSP:P47974 GO:GO:0005847 HOGENOM:HOG000212457 HOVERGEN:HBG051108
CTD:10898 GeneTree:ENSGT00390000009627 KO:K14404 OrthoDB:EOG4KH2VQ
EMBL:BC089824 IPI:IPI00553898 RefSeq:NP_001012351.1
UniGene:Rn.104788 ProteinModelPortal:Q5FVR7 SMR:Q5FVR7
Ensembl:ENSRNOT00000042474 GeneID:304277 KEGG:rno:304277
InParanoid:Q5FVR7 NextBio:652764 ArrayExpress:Q5FVR7
Genevestigator:Q5FVR7 GermOnline:ENSRNOG00000025217 Uniprot:Q5FVR7
Length = 243
Score = 104 (41.7 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 26/82 (31%), Positives = 36/82 (43%)
Query: 252 PDCRYYMNTGTCKYGADCKFHH--PKERIAQS-----AASNIGPLGLPSRPGQAICSNYS 304
P+C +Y G C +C F H P+ +I GPL + IC NY
Sbjct: 94 PECYFYSKFGECS-NKECPFLHIDPESKIKDCPWYDRGFCKHGPLCRHRHTRRVICVNY- 151
Query: 305 MYGICKFGPTCRFDHPYAGYPI 326
+ G C GP+C+F HP P+
Sbjct: 152 LVGFCPEGPSCKFMHPRFELPM 173
Score = 70 (29.7 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 28/101 (27%), Positives = 44/101 (43%)
Query: 19 NIEEAIWRLKIHDNQEGGGVAQASPYPA--RPGEPDCLFYRRTGLCGYGSNCRFNHPAYA 76
+++ + L+I Q+ G AQ P+P + G C F+ + CG G C F H
Sbjct: 7 SVDHIKFDLEIAVEQQLG--AQPLPFPGMDKSGAAVCEFFLKAA-CGKGGMCPFRH---- 59
Query: 77 AQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKD 117
G E+ C ++L+ G CK G C++ H D
Sbjct: 60 ISG--------EKTVV--CKHWLR-GLCKKGDQCEFLHEYD 89
>UNIPROTKB|J9P398 [details] [associations]
symbol:CPSF4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000571
InterPro:IPR001878 Pfam:PF00098 Pfam:PF00642 PROSITE:PS50103
PROSITE:PS50158 SMART:SM00343 SMART:SM00356 GO:GO:0046872
GO:GO:0008270 GO:GO:0003676 Gene3D:4.10.60.10 SUPFAM:SSF57756
CTD:10898 GeneTree:ENSGT00390000009627 KO:K14404 OMA:PLDQVTC
EMBL:AAEX03004276 RefSeq:XP_850149.1 ProteinModelPortal:J9P398
Ensembl:ENSCAFT00000043832 GeneID:489859 KEGG:cfa:489859
Uniprot:J9P398
Length = 269
Score = 104 (41.7 bits), Expect = 4.0e-06, Sum P(2) = 4.0e-06
Identities = 26/82 (31%), Positives = 36/82 (43%)
Query: 252 PDCRYYMNTGTCKYGADCKFHH--PKERIAQS-----AASNIGPLGLPSRPGQAICSNYS 304
P+C +Y G C +C F H P+ +I GPL + IC NY
Sbjct: 94 PECYFYSKFGECS-NKECPFLHIDPESKIKDCPWYDRGFCKHGPLCRHRHTRRVICVNY- 151
Query: 305 MYGICKFGPTCRFDHPYAGYPI 326
+ G C GP+C+F HP P+
Sbjct: 152 LVGFCPEGPSCKFMHPRFELPM 173
Score = 70 (29.7 bits), Expect = 4.0e-06, Sum P(2) = 4.0e-06
Identities = 28/101 (27%), Positives = 44/101 (43%)
Query: 19 NIEEAIWRLKIHDNQEGGGVAQASPYPA--RPGEPDCLFYRRTGLCGYGSNCRFNHPAYA 76
+++ + L+I Q+ G AQ P+P + G C F+ + CG G C F H
Sbjct: 7 SVDHIKFDLEIAVEQQLG--AQPLPFPGMDKSGAAVCEFFLKAA-CGKGGMCPFRH---- 59
Query: 77 AQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKD 117
G E+ C ++L+ G CK G C++ H D
Sbjct: 60 ISG--------EKTVV--CKHWLR-GLCKKGDQCEFLHEYD 89
>UNIPROTKB|Q66KE3 [details] [associations]
symbol:cpsf4 "Cleavage and polyadenylation specificity
factor subunit 4" species:8364 "Xenopus (Silurana) tropicalis"
[GO:0005847 "mRNA cleavage and polyadenylation specificity factor
complex" evidence=ISS] InterPro:IPR000571 InterPro:IPR001878
Pfam:PF00098 Pfam:PF00642 PROSITE:PS50103 PROSITE:PS50158
SMART:SM00343 SMART:SM00356 GO:GO:0046872 GO:GO:0008270
GO:GO:0006397 GO:GO:0003723 Gene3D:4.10.60.10 SUPFAM:SSF57756
eggNOG:COG5084 GO:GO:0042462 GO:GO:0005847 HOVERGEN:HBG051108
CTD:10898 KO:K14404 OrthoDB:EOG4KH2VQ EMBL:BC080440
RefSeq:NP_001007933.1 UniGene:Str.3196 ProteinModelPortal:Q66KE3
SMR:Q66KE3 STRING:Q66KE3 GeneID:493312 KEGG:xtr:493312
Xenbase:XB-GENE-948302 InParanoid:Q66KE3 Bgee:Q66KE3 Uniprot:Q66KE3
Length = 269
Score = 101 (40.6 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 26/82 (31%), Positives = 35/82 (42%)
Query: 252 PDCRYYMNTGTCKYGADCKFHH--PKERIAQS-----AASNIGPLGLPSRPGQAICSNYS 304
P+C +Y G C +C F H P+ +I GPL + IC NY
Sbjct: 94 PECYFYSKFGECS-NKECPFLHIDPESKIKDCPWYDRGFCKHGPLCRHRHTRRVICVNY- 151
Query: 305 MYGICKFGPTCRFDHPYAGYPI 326
+ G C GP C+F HP P+
Sbjct: 152 LVGFCIEGPNCKFMHPRFELPM 173
Score = 68 (29.0 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 24/81 (29%), Positives = 35/81 (43%)
Query: 39 AQASPYPA--RPGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCG 96
AQ P+P + G C F+ ++ CG G C F H G E+ C
Sbjct: 25 AQPLPFPGMDKSGAAVCEFFLKSA-CGKGGMCPFRH----ISG--------EKTVV--CK 69
Query: 97 YYLKTGTCKYGSTCKYHHPKD 117
++L+ G CK G C++ H D
Sbjct: 70 HWLR-GLCKKGDQCEFLHEYD 89
>UNIPROTKB|Q6DJP7 [details] [associations]
symbol:cpsf4 "Cleavage and polyadenylation specificity
factor subunit 4" species:8355 "Xenopus laevis" [GO:0005847 "mRNA
cleavage and polyadenylation specificity factor complex"
evidence=ISS] InterPro:IPR000571 InterPro:IPR001878 Pfam:PF00098
Pfam:PF00642 PROSITE:PS50103 PROSITE:PS50158 SMART:SM00343
SMART:SM00356 GO:GO:0046872 GO:GO:0008270 GO:GO:0006397
GO:GO:0003723 Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0005847
HOVERGEN:HBG051108 CTD:10898 KO:K14404 EMBL:BC075128
RefSeq:NP_001086337.1 UniGene:Xl.25683 ProteinModelPortal:Q6DJP7
SMR:Q6DJP7 GeneID:444766 KEGG:xla:444766 Xenbase:XB-GENE-948308
Uniprot:Q6DJP7
Length = 269
Score = 101 (40.6 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 26/82 (31%), Positives = 35/82 (42%)
Query: 252 PDCRYYMNTGTCKYGADCKFHH--PKERIAQS-----AASNIGPLGLPSRPGQAICSNYS 304
P+C +Y G C +C F H P+ +I GPL + IC NY
Sbjct: 94 PECYFYSKFGECS-NKECPFLHIDPESKIKDCPWYDRGFCKHGPLCRHRHTRRVICVNY- 151
Query: 305 MYGICKFGPTCRFDHPYAGYPI 326
+ G C GP C+F HP P+
Sbjct: 152 LVGFCIEGPNCKFMHPRFELPM 173
Score = 68 (29.0 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 24/81 (29%), Positives = 35/81 (43%)
Query: 39 AQASPYPA--RPGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCG 96
AQ P+P + G C F+ ++ CG G C F H G E+ C
Sbjct: 25 AQPLPFPGMDKSGAAVCEFFLKSA-CGKGGMCPFRH----ISG--------EKTVV--CK 69
Query: 97 YYLKTGTCKYGSTCKYHHPKD 117
++L+ G CK G C++ H D
Sbjct: 70 HWLR-GLCKKGDQCEFLHEYD 89
>UNIPROTKB|I3LCK9 [details] [associations]
symbol:LOC100738395 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000571
InterPro:IPR001878 Pfam:PF00098 Pfam:PF00642 PROSITE:PS50103
PROSITE:PS50158 SMART:SM00343 SMART:SM00356 GO:GO:0046872
GO:GO:0008270 GO:GO:0003676 Gene3D:4.10.60.10 SUPFAM:SSF57756
GeneTree:ENSGT00390000009627 OMA:PLDQVTC EMBL:FP103031
Ensembl:ENSSSCT00000031676 Uniprot:I3LCK9
Length = 243
Score = 104 (41.7 bits), Expect = 2.0e-05, Sum P(3) = 2.0e-05
Identities = 26/82 (31%), Positives = 36/82 (43%)
Query: 252 PDCRYYMNTGTCKYGADCKFHH--PKERIAQS-----AASNIGPLGLPSRPGQAICSNYS 304
P+C +Y G C +C F H P+ +I GPL + IC NY
Sbjct: 68 PECYFYSKFGECS-NKECPFLHIDPESKIKDCPWYDRGFCKHGPLCRHRHTRRVICVNY- 125
Query: 305 MYGICKFGPTCRFDHPYAGYPI 326
+ G C GP+C+F HP P+
Sbjct: 126 LVGFCPEGPSCKFMHPRFELPM 147
Score = 55 (24.4 bits), Expect = 2.0e-05, Sum P(3) = 2.0e-05
Identities = 20/71 (28%), Positives = 29/71 (40%)
Query: 47 RPGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKY 106
+ G C F+ + CG G C F H G E+ C ++L+ G CK
Sbjct: 9 KSGAAVCEFFLKAA-CGKGGMCPFRH----ISG--------EKTVV--CKHWLR-GLCKK 52
Query: 107 GSTCKYHHPKD 117
G C++ H D
Sbjct: 53 GDQCEFLHEYD 63
Score = 52 (23.4 bits), Expect = 3.9e-05, Sum P(3) = 3.9e-05
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 86 LPERNGQPDCGYYLKTGTCKYGSTCKYHH 114
+ E++G C ++LK C G C + H
Sbjct: 6 MAEKSGAAVCEFFLKAA-CGKGGMCPFRH 33
Score = 39 (18.8 bits), Expect = 2.0e-05, Sum P(3) = 2.0e-05
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 398 DHPPHSVPNCSEPPHDQSN 416
+ PP +P ++PP QSN
Sbjct: 151 EQPP--LPQQTQPPAKQSN 167
>POMBASE|SPAC227.08c [details] [associations]
symbol:yth1 "mRNA cleavage and polyadenylation
specificity factor complex Yth1" species:4896 "Schizosaccharomyces
pombe" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0005847 "mRNA cleavage and polyadenylation specificity factor
complex" evidence=IDA] [GO:0006378 "mRNA polyadenylation"
evidence=IC] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103 SMART:SM00356
PomBase:SPAC227.08c GO:GO:0005829 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0046872 GO:GO:0008270 GO:GO:0006378
GO:GO:0003723 eggNOG:COG5084 GO:GO:0005847 HOGENOM:HOG000212457
KO:K14404 OrthoDB:EOG4PG99D PIR:T50164 RefSeq:NP_592962.1
ProteinModelPortal:Q9UTD1 SMR:Q9UTD1 STRING:Q9UTD1
EnsemblFungi:SPAC227.08c.1 GeneID:2541506 KEGG:spo:SPAC227.08c
NextBio:20802605 Uniprot:Q9UTD1
Length = 170
Score = 105 (42.0 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 27/83 (32%), Positives = 37/83 (44%)
Query: 252 PDCRYYMNTGTCKYGADCKFHH--PKERIAQSAASNIG--PLGLPSRPGQAI-----CSN 302
P C +Y G C G +C + H P +++ A N+G PLG P G+ + C
Sbjct: 80 PPCHFYAERGWCSNGEECLYLHLDPSKQVGVCAWYNMGFCPLG-PICRGKHVRKPRPCPK 138
Query: 303 YSMYGICKFGPTCRFDHPYAGYP 325
Y + G C GP C HP P
Sbjct: 139 Y-LAGFCPLGPNCPDAHPKHSEP 160
Score = 49 (22.3 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 11/36 (30%), Positives = 16/36 (44%)
Query: 91 GQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSF 126
G C ++L+ G CK G C + H + P F
Sbjct: 50 GSVVCKHWLR-GLCKKGEQCDFLHEYNLKKMPPCHF 84
>UNIPROTKB|B7Z7B0 [details] [associations]
symbol:CPSF4 "Cleavage and polyadenylation-specificity
factor subunit 4" species:9606 "Homo sapiens" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR000571 InterPro:IPR001878 Pfam:PF00098
Pfam:PF00642 PROSITE:PS50103 PROSITE:PS50158 SMART:SM00343
SMART:SM00356 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
Gene3D:4.10.60.10 SUPFAM:SSF57756 HOGENOM:HOG000212457
HOVERGEN:HBG051108 OrthoDB:EOG4KH2VQ UniGene:Hs.489287
HGNC:HGNC:2327 EMBL:AC073063 EMBL:AK301745 IPI:IPI00924476
SMR:B7Z7B0 STRING:B7Z7B0 Ensembl:ENST00000441580 UCSC:uc011kix.2
Uniprot:B7Z7B0
Length = 191
Score = 104 (41.7 bits), Expect = 5.7e-05, Sum P(2) = 5.7e-05
Identities = 26/82 (31%), Positives = 36/82 (43%)
Query: 252 PDCRYYMNTGTCKYGADCKFHH--PKERIAQS-----AASNIGPLGLPSRPGQAICSNYS 304
P+C +Y G C +C F H P+ +I GPL + IC NY
Sbjct: 41 PECYFYSKFGECS-NKECPFLHIDPESKIKDCPWYDRGFCKHGPLCRHRHTRRVICVNY- 98
Query: 305 MYGICKFGPTCRFDHPYAGYPI 326
+ G C GP+C+F HP P+
Sbjct: 99 LVGFCPEGPSCKFMHPRFELPM 120
Score = 51 (23.0 bits), Expect = 5.7e-05, Sum P(2) = 5.7e-05
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 95 CGYYLKTGTCKYGSTCKYHHPKD 117
C ++L+ G CK G C++ H D
Sbjct: 15 CKHWLR-GLCKKGDQCEFLHEYD 36
>WB|WBGene00013319 [details] [associations]
symbol:ccch-5 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0000003 "reproduction" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103
SMART:SM00356 GO:GO:0009792 EMBL:Z99281 GO:GO:0008270 GO:GO:0000003
GO:GO:0003676 eggNOG:COG5063 GeneTree:ENSGT00530000063262
PIR:T27239 RefSeq:NP_502805.1 ProteinModelPortal:O18251 SMR:O18251
STRING:O18251 EnsemblMetazoa:Y57G11C.25 GeneID:178412
KEGG:cel:CELE_Y57G11C.25 UCSC:Y57G11C.25 CTD:178412
WormBase:Y57G11C.25 HOGENOM:HOG000114059 InParanoid:O18251
NextBio:901036 Uniprot:O18251
Length = 199
Score = 118 (46.6 bits), Expect = 6.6e-05, P = 6.6e-05
Identities = 24/66 (36%), Positives = 33/66 (50%)
Query: 254 CRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGP 313
C+ + T C YG CKF H E + Q N+G + P +C N+S G CK+G
Sbjct: 74 CKTFQLTKACSYGEQCKFAHSVEEL-QLKHQNLG-INNPKYK-TVLCDNFSTTGHCKYGT 130
Query: 314 TCRFDH 319
C+F H
Sbjct: 131 KCQFIH 136
>WB|WBGene00009537 [details] [associations]
symbol:ccch-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0009792 "embryo development ending
in birth or egg hatching" evidence=IMP] InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50103 SMART:SM00356 GO:GO:0009792
GO:GO:0008270 GO:GO:0003676 eggNOG:COG5063
GeneTree:ENSGT00530000063262 EMBL:Z82267 HOGENOM:HOG000114059
PIR:T21961 RefSeq:NP_502931.1 ProteinModelPortal:O45491 SMR:O45491
IntAct:O45491 STRING:O45491 EnsemblMetazoa:F38C2.5 GeneID:178454
KEGG:cel:CELE_F38C2.5 UCSC:F38C2.5 CTD:178454 WormBase:F38C2.5
InParanoid:O45491 NextBio:901202 Uniprot:O45491
Length = 186
Score = 113 (44.8 bits), Expect = 0.00019, P = 0.00019
Identities = 24/66 (36%), Positives = 32/66 (48%)
Query: 254 CRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGP 313
C+ + T C YG CKF H E + Q N G + P +C N+S G CK+G
Sbjct: 78 CKTFQLTRACSYGEQCKFAHSVEEL-QLKQKNRG-VNHPKYK-TVLCDNFSRTGHCKYGT 134
Query: 314 TCRFDH 319
C+F H
Sbjct: 135 KCQFIH 140
>WB|WBGene00013797 [details] [associations]
symbol:Y116A8C.20 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] InterPro:IPR000571 Pfam:PF00642
PROSITE:PS50103 SMART:SM00356 GO:GO:0008270 GO:GO:0003676
eggNOG:COG5063 GeneTree:ENSGT00530000063262 EMBL:AL117204
HOGENOM:HOG000114669 PIR:T31492 RefSeq:NP_503020.1
ProteinModelPortal:Q9U2V1 SMR:Q9U2V1 STRING:Q9U2V1
EnsemblMetazoa:Y116A8C.20 GeneID:178478 KEGG:cel:CELE_Y116A8C.20
UCSC:Y116A8C.20 CTD:178478 WormBase:Y116A8C.20 InParanoid:Q9U2V1
NextBio:901292 Uniprot:Q9U2V1
Length = 201
Score = 114 (45.2 bits), Expect = 0.00021, P = 0.00021
Identities = 31/103 (30%), Positives = 49/103 (47%)
Query: 53 CLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPD-CGYYLKTGTCKYGSTCK 111
CL ++R C YG C+F H + + Q ++ RN + C + TG CKYG C+
Sbjct: 94 CLSHKRGKTCIYGEQCKFAHGVHELRCQQAKKN--HRNYKTVLCDKFTTTGYCKYGIRCQ 151
Query: 112 Y-HHPKDR-NGAGPVSFNILGLPMRQDEKSCPYYMRTGSFLPS 152
+ H D N P+ L ++ D S + + + SFLP+
Sbjct: 152 FIHRSMDATNVTRPIDTADFKLDVQSD-LSRAFALDSSSFLPN 193
>UNIPROTKB|H9KVA5 [details] [associations]
symbol:CPSF4L "Putative cleavage and
polyadenylation-specificity factor subunit 4-like protein"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103 SMART:SM00356
GO:GO:0008270 GO:GO:0003676 EMBL:AC087301 HGNC:HGNC:33632
ProteinModelPortal:H9KVA5 SMR:H9KVA5 PRIDE:H9KVA5
Ensembl:ENST00000397671 Bgee:H9KVA5 Uniprot:H9KVA5
Length = 152
Score = 91 (37.1 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 23/76 (30%), Positives = 31/76 (40%)
Query: 252 PDCRYYMNTGTCKYGADCKFHHPKERIA--------QSAASNIGPLGLPSRPGQAICSNY 303
P+C +Y G C +C F H K Q + GPL + +C NY
Sbjct: 30 PECYFYSKFGDCS-NKECSFLHVKPAFKSQDCPWYDQGFCKDAGPLCKYRHVPRIMCLNY 88
Query: 304 SMYGICKFGPTCRFDH 319
+ G C GP C+F H
Sbjct: 89 -LVGFCPEGPKCQFAH 103
Score = 54 (24.1 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 95 CGYYLKTGTCKYGSTCKYHHPKD 117
C ++L+ G CK G CK+ H D
Sbjct: 4 CKHWLR-GLCKKGDHCKFLHQYD 25
>UNIPROTKB|C9JEV9 [details] [associations]
symbol:CPSF4 "Cleavage and polyadenylation-specificity
factor subunit 4" species:9606 "Homo sapiens" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005739 "mitochondrion" evidence=IDA]
InterPro:IPR000571 InterPro:IPR001878 Pfam:PF00098 Pfam:PF00642
PROSITE:PS50103 PROSITE:PS50158 SMART:SM00343 SMART:SM00356
GO:GO:0005739 GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
GO:GO:0003676 Gene3D:4.10.60.10 SUPFAM:SSF57756
HOGENOM:HOG000212457 HGNC:HGNC:2327 EMBL:AC073063 IPI:IPI00927478
ProteinModelPortal:C9JEV9 SMR:C9JEV9 STRING:C9JEV9
Ensembl:ENST00000451876 ArrayExpress:C9JEV9 Bgee:C9JEV9
Uniprot:C9JEV9
Length = 211
Score = 113 (44.8 bits), Expect = 0.00033, P = 0.00033
Identities = 25/76 (32%), Positives = 36/76 (47%)
Query: 254 CRYYMNTGTCKYGADCKFHHPKERIAQSAA---SNIGPLGLPSRPGQAICSNYSMYGICK 310
C++++ G CK G C+F H + S GPL + IC NY + G C
Sbjct: 68 CKHWLR-GLCKKGDQCEFLHEYDMTKMPECYFYSKFGPLCRHRHTRRVICVNY-LVGFCP 125
Query: 311 FGPTCRFDHPYAGYPI 326
GP+C+F HP P+
Sbjct: 126 EGPSCKFMHPRFELPM 141
>MGI|MGI:1861602 [details] [associations]
symbol:Cpsf4 "cleavage and polyadenylation specific factor
4" species:10090 "Mus musculus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR000571 InterPro:IPR001878 Pfam:PF00098 Pfam:PF00642
PROSITE:PS50103 PROSITE:PS50158 SMART:SM00343 SMART:SM00356
MGI:MGI:1861602 GO:GO:0046872 GO:GO:0008270 GO:GO:0006397
GO:GO:0003723 Gene3D:4.10.60.10 SUPFAM:SSF57756 eggNOG:COG5084
GO:GO:0005847 HOGENOM:HOG000212457 HOVERGEN:HBG051108 CTD:10898
GeneTree:ENSGT00390000009627 KO:K14404 OrthoDB:EOG4KH2VQ
EMBL:AK046064 EMBL:AF033201 EMBL:BC057067 IPI:IPI00309761
IPI:IPI00380450 IPI:IPI01027761 RefSeq:NP_848671.1
UniGene:Mm.196884 ProteinModelPortal:Q8BQZ5 SMR:Q8BQZ5
STRING:Q8BQZ5 PhosphoSite:Q8BQZ5 PaxDb:Q8BQZ5 PRIDE:Q8BQZ5
Ensembl:ENSMUST00000070487 GeneID:54188 KEGG:mmu:54188
UCSC:uc009amj.1 ChiTaRS:CPSF4 NextBio:311022 Bgee:Q8BQZ5
CleanEx:MM_CPSF4 Genevestigator:Q8BQZ5
GermOnline:ENSMUSG00000029625 Uniprot:Q8BQZ5
Length = 211
Score = 113 (44.8 bits), Expect = 0.00033, P = 0.00033
Identities = 25/76 (32%), Positives = 36/76 (47%)
Query: 254 CRYYMNTGTCKYGADCKFHHPKERIAQSAA---SNIGPLGLPSRPGQAICSNYSMYGICK 310
C++++ G CK G C+F H + S GPL + IC NY + G C
Sbjct: 68 CKHWLR-GLCKKGDQCEFLHEYDMTKMPECYFYSKFGPLCRHRHTRRVICVNY-LVGFCP 125
Query: 311 FGPTCRFDHPYAGYPI 326
GP+C+F HP P+
Sbjct: 126 EGPSCKFMHPRFELPM 141
>UNIPROTKB|E2RBK7 [details] [associations]
symbol:CPSF4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005847 "mRNA cleavage and polyadenylation
specificity factor complex" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000571 InterPro:IPR001878 Pfam:PF00098 Pfam:PF00642
PROSITE:PS50103 PROSITE:PS50158 SMART:SM00343 SMART:SM00356
GO:GO:0046872 GO:GO:0008270 GO:GO:0003676 Gene3D:4.10.60.10
SUPFAM:SSF57756 GO:GO:0005847 GeneTree:ENSGT00390000009627
EMBL:AAEX03004276 Ensembl:ENSCAFT00000023892 Uniprot:E2RBK7
Length = 212
Score = 113 (44.8 bits), Expect = 0.00034, P = 0.00034
Identities = 25/76 (32%), Positives = 36/76 (47%)
Query: 254 CRYYMNTGTCKYGADCKFHHPKERIAQSAA---SNIGPLGLPSRPGQAICSNYSMYGICK 310
C++++ G CK G C+F H + S GPL + IC NY + G C
Sbjct: 68 CKHWLR-GLCKKGDQCEFLHEYDMTKMPECYFYSKFGPLCRHRHTRRVICVNY-LVGFCP 125
Query: 311 FGPTCRFDHPYAGYPI 326
GP+C+F HP P+
Sbjct: 126 EGPSCKFMHPRFELPM 141
>UNIPROTKB|F1LWJ4 [details] [associations]
symbol:F1LWJ4 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000571 InterPro:IPR001878 Pfam:PF00098 Pfam:PF00642
PROSITE:PS50103 PROSITE:PS50158 SMART:SM00343 SMART:SM00356
GO:GO:0046872 GO:GO:0008270 GO:GO:0003676 Gene3D:4.10.60.10
GeneTree:ENSGT00390000009627 IPI:IPI00776496
Ensembl:ENSRNOT00000029618 Uniprot:F1LWJ4
Length = 243
Score = 91 (37.1 bits), Expect = 0.00043, Sum P(2) = 0.00043
Identities = 24/81 (29%), Positives = 35/81 (43%)
Query: 253 DCRYYMNTGTCKYGADCKFHH--PKERIAQS-----AASNIGPLGLPSRPGQAICSNYSM 305
+C +Y C G DC F H P+ +I + GPL + +C NY +
Sbjct: 96 ECYFYSKFWKCS-GKDCSFVHMDPESKIKDCPWYDCSFCKHGPLCRYQHTRRVLCVNY-L 153
Query: 306 YGICKFGPTCRFDHPYAGYPI 326
G C G +C+F HP P+
Sbjct: 154 VGFCPGGASCKFIHPRFELPM 174
Score = 63 (27.2 bits), Expect = 0.00043, Sum P(2) = 0.00043
Identities = 27/101 (26%), Positives = 41/101 (40%)
Query: 17 ADNIEEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHPAYA 76
A I+ + L+I Q+ G + P + G C F+ + CG G C F H
Sbjct: 6 AGTIDHNKFALEITMEQQLGAQQLSFPSMDKSGAAVCEFFVKAA-CGKGGMCPFCH---- 60
Query: 77 AQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKD 117
G E+ C ++L+ G CK G C++ H D
Sbjct: 61 ISG--------EKTVV--CQHWLR-GLCKKGDQCEFLHKYD 90
>WB|WBGene00013794 [details] [associations]
symbol:dct-13 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] InterPro:IPR000571 Pfam:PF00642
PROSITE:PS50103 SMART:SM00356 GO:GO:0008270 GO:GO:0003676
eggNOG:COG5063 GeneTree:ENSGT00530000063262 EMBL:AL117204
HOGENOM:HOG000114669 PIR:T31489 RefSeq:NP_503017.1
ProteinModelPortal:Q9U2V4 SMR:Q9U2V4 STRING:Q9U2V4
EnsemblMetazoa:Y116A8C.17 GeneID:178476 KEGG:cel:CELE_Y116A8C.17
UCSC:Y116A8C.17 CTD:178476 WormBase:Y116A8C.17 InParanoid:Q9U2V4
NextBio:901284 Uniprot:Q9U2V4
Length = 205
Score = 110 (43.8 bits), Expect = 0.00068, P = 0.00068
Identities = 30/102 (29%), Positives = 45/102 (44%)
Query: 53 CLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPD-CGYYLKTGTCKYGSTCK 111
CL ++R C YG C+F H + + Q RN + C + TG CKYG+ C+
Sbjct: 98 CLSHKRGKTCIYGEACKFAHGVHELRCQQTTRN--HRNYKTVLCDKFTTTGYCKYGARCQ 155
Query: 112 Y-HHPKDRNGAGPVSFNILGLPMRQDEKSCPYYMRTGSFLPS 152
+ H D A P Q + S + + + SFLP+
Sbjct: 156 FIHRSMDTTPAAKPMETADFKPNVQSDLSRAFALDSSSFLPN 197
>DICTYBASE|DDB_G0270148 [details] [associations]
symbol:cpsf4 "cleavage and polyadenylation
specificity factor 30 kDa subunit" species:44689 "Dictyostelium
discoideum" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006379 "mRNA
cleavage" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0005847 "mRNA cleavage and polyadenylation
specificity factor complex" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR000571 InterPro:IPR001878 Pfam:PF00098 PROSITE:PS50103
PROSITE:PS50158 SMART:SM00343 SMART:SM00356 dictyBase:DDB_G0270148
EMBL:AAFI02000005 GenomeReviews:CM000150_GR GO:GO:0046872
GO:GO:0008270 GO:GO:0006378 GO:GO:0003723 Gene3D:4.10.60.10
SUPFAM:SSF57756 eggNOG:COG5084 GO:GO:0005847 GO:GO:0006379
KO:K14404 RefSeq:XP_646578.1 ProteinModelPortal:Q55CA3 SMR:Q55CA3
STRING:Q55CA3 EnsemblProtists:DDB0233701 GeneID:8617548
KEGG:ddi:DDB_G0270148 InParanoid:Q55CA3 OMA:ECMYLHV
ProtClustDB:CLSZ2437480 Uniprot:Q55CA3
Length = 372
Score = 90 (36.7 bits), Expect = 0.00071, Sum P(2) = 0.00071
Identities = 20/76 (26%), Positives = 34/76 (44%)
Query: 252 PDCRYYMNTGTCKYGADCKFHH--PKERIAQS-----AASNIGPLGLPSRPGQAICSNYS 304
P+C ++ G C +C + H P+E++ + GP + +C NY
Sbjct: 91 PECYFFSKHGECN-NQECMYLHVNPEEKVRECPWYSRGFCKHGPKCRHKHIKKLLCENYY 149
Query: 305 MYGICKFGPTCRFDHP 320
+ G C GP C++ HP
Sbjct: 150 L-GFCPEGPKCKYGHP 164
Score = 68 (29.0 bits), Expect = 0.00071, Sum P(2) = 0.00071
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 88 ERNGQPDCGYYLKTGTCKYGSTCKYHHPK 116
+++G C ++LK G+C GS C Y H K
Sbjct: 31 DKDGSDICRFFLK-GSCTKGSDCPYKHTK 58
>ZFIN|ZDB-GENE-990415-180 [details] [associations]
symbol:cpsf4 "cleavage and polyadenylation specific
factor 4" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0042462 "eye photoreceptor cell development" evidence=IMP]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR000571
InterPro:IPR001878 Pfam:PF00098 Pfam:PF00642 PROSITE:PS50103
PROSITE:PS50158 SMART:SM00343 SMART:SM00356
ZFIN:ZDB-GENE-990415-180 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
Gene3D:4.10.60.10 SUPFAM:SSF57756 eggNOG:COG5084 GO:GO:0042462
HOGENOM:HOG000212457 HOVERGEN:HBG051108 CTD:10898 KO:K14404
OrthoDB:EOG4KH2VQ EMBL:U70479 EMBL:BC045289 IPI:IPI00630205
RefSeq:NP_571084.1 UniGene:Dr.75095 SMR:Q98881 STRING:Q98881
GeneID:30203 KEGG:dre:30203 InParanoid:Q98881 NextBio:20806666
Uniprot:Q98881
Length = 271
Score = 92 (37.4 bits), Expect = 0.00080, Sum P(2) = 0.00080
Identities = 38/144 (26%), Positives = 55/144 (38%)
Query: 252 PDCRYYMNTGTCKYGADCKFHH--PKERIAQS-----AASNIGPLGLPSRPGQAICSNYS 304
P+C +Y G C +C F H P+ +I GP + IC NY
Sbjct: 94 PECYFYSKFGECS-NKECPFLHIDPESKIKDCPWYDRGFCKHGPDCRHRHTRRVICVNY- 151
Query: 305 MYGICKFGPTCRFDHPYAGYPINYGXX--XXXXXXXXXXXMNHQAI--SATHSIE-TSPD 359
+ G C G +C+F HP P+ N Q I S+ I+ T+P+
Sbjct: 152 LVGFCPEGKSCKFMHPRFELPMGATEQPPLPQQVQTQQKQQNMQPINRSSQSLIQLTNPN 211
Query: 360 ASSKIPNWVQNSDAVSVQHQNPDM 383
S+ + N AV + H N M
Sbjct: 212 ISNNNHQRIPN--AVGIVHSNSHM 233
Score = 61 (26.5 bits), Expect = 0.00080, Sum P(2) = 0.00080
Identities = 27/93 (29%), Positives = 39/93 (41%)
Query: 27 LKIHDNQEGGGVAQASPYPA--RPGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYRE 84
L+I Q+ G AQ P+P + G C ++ R C G C F H G
Sbjct: 15 LEIAVEQQLG--AQPLPFPGMDKSGAAVCEYFMRAA-CMKGGMCPFRH----ISG----- 62
Query: 85 ELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKD 117
E+ C ++L+ G CK G C++ H D
Sbjct: 63 ---EKTVV--CKHWLR-GLCKKGDQCEFLHEYD 89
>UNIPROTKB|E2RBM0 [details] [associations]
symbol:CPSF4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50103 SMART:SM00356 GO:GO:0008270
GO:GO:0003676 GeneTree:ENSGT00390000009627 EMBL:AAEX03004276
Ensembl:ENSCAFT00000023887 NextBio:20862973 Uniprot:E2RBM0
Length = 164
Score = 91 (37.1 bits), Expect = 0.00088, Sum P(2) = 0.00088
Identities = 23/73 (31%), Positives = 32/73 (43%)
Query: 252 PDCRYYMNTGTCKYGADCKFHH--PKERIAQS-----AASNIGPLGLPSRPGQAICSNYS 304
P+C +Y G C +C F H P+ +I GPL + IC NY
Sbjct: 92 PECYFYSKFGECS-NKECPFLHIDPESKIKDCPWYDRGFCKHGPLCRHRHTRRVICVNY- 149
Query: 305 MYGICKFGPTCRF 317
+ G C GP+C+F
Sbjct: 150 LVGFCPEGPSCKF 162
Score = 51 (23.0 bits), Expect = 0.00088, Sum P(2) = 0.00088
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 95 CGYYLKTGTCKYGSTCKYHHPKD 117
C ++L+ G CK G C++ H D
Sbjct: 66 CKHWLR-GLCKKGDQCEFLHEYD 87
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.314 0.132 0.419 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 416 403 0.00099 117 3 11 23 0.46 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 37
No. of states in DFA: 608 (65 KB)
Total size of DFA: 289 KB (2148 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 36.53u 0.09s 36.62t Elapsed: 00:00:06
Total cpu time: 36.54u 0.09s 36.63t Elapsed: 00:00:06
Start: Tue May 21 01:25:26 2013 End: Tue May 21 01:25:32 2013