BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014918
(416 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q94AD9|C3H3_ARATH Zinc finger CCCH domain-containing protein 3 OS=Arabidopsis
thaliana GN=At1g04990 PE=2 SV=1
Length = 404
Score = 341 bits (875), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 196/427 (45%), Positives = 250/427 (58%), Gaps = 68/427 (15%)
Query: 1 MPDNRQVKSNAVANQSADNIEEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTG 60
M D + V+S+ V+ +S+D IE+A ++K+++ GV + +PYP RPGE DC FY RTG
Sbjct: 5 MSDTQHVQSSLVSIRSSDKIEDAFRKMKVNET----GVEELNPYPDRPGERDCQFYLRTG 60
Query: 61 LCGYGSNCRFNHPAYAAQG-AQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRN 119
LCGYGS+CR+NHP + Q A Y+EELPER GQPDC Y+LKTG CKYG TCKYHHPKDRN
Sbjct: 61 LCGYGSSCRYNHPTHLPQDVAYYKEELPERIGQPDCEYFLKTGACKYGPTCKYHHPKDRN 120
Query: 120 GAGPVSFNILGLPMRQDEKSCPYYMRTG-------------------------SFLPSSG 154
GA PV FN++GLPMR EK CPYY+RTG S P++
Sbjct: 121 GAQPVMFNVIGLPMRLGEKPCPYYLRTGTCRFGVACKFHHPQPDNGHSTAYGMSSFPAAD 180
Query: 155 LQYAGSLPTWSLQRAPYLSSRLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGPLSPTSI 214
L+YA L S R Q QSY+P++VSPSQG +P GW YM
Sbjct: 181 LRYASGLTMMSTYGT---LPRPQVPQSYVPILVSPSQGFLPPQGWAPYM----------- 226
Query: 215 AGSNLIYSSRNQGDL-GAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHH 273
A SN +Y+ +NQ G+ A M + A ++ L E DQP+CR++MNTGTCKYG DCK+ H
Sbjct: 227 AASNSMYNVKNQPYYSGSSASMAMAVALNRGLSESSDQPECRFFMNTGTCKYGDDCKYSH 286
Query: 274 PKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGYP-INYGLSL 332
P RI+Q S I P LP+RPGQ C N+ YG CKFGP C+FDHP YP + SL
Sbjct: 287 PGVRISQPPPSLINPFVLPARPGQPACGNFRSYGFCKFGPNCKFDHPMLPYPGLTMATSL 346
Query: 333 PPLSILDSSLMNHQAISATHSIETSPDASSKIPNWVQNSDAVSVQHQNPDMKNSTTKNSD 392
P + S + HQ IS T PN SD+ S+ + PD+K K S
Sbjct: 347 P--TPFASPVTTHQRISPT-------------PN---RSDSKSLSNGKPDVK----KESS 384
Query: 393 DSSKVDH 399
++ K D+
Sbjct: 385 ETEKPDN 391
>sp|O48772|C3H26_ARATH Zinc finger CCCH domain-containing protein 26 OS=Arabidopsis
thaliana GN=ZFN2 PE=2 SV=1
Length = 453
Score = 293 bits (750), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 185/459 (40%), Positives = 251/459 (54%), Gaps = 88/459 (19%)
Query: 5 RQVKSNAVANQSADNIEEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTGLCGY 64
+QV+++ + +S D IE+ R+K++++ + Q+SPYP RPGE DC F+ RTG CGY
Sbjct: 6 QQVQNSTGSIRSPDKIEDTFRRMKVNED----NMEQSSPYPDRPGERDCQFFLRTGQCGY 61
Query: 65 GSNCRFNHP-AYAAQG-AQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAG 122
G++CR+NHP QG YR++LPER GQPDC +TG CKYG TCKYHHPKDRNGAG
Sbjct: 62 GNSCRYNHPLTNLPQGIIYYRDQLPERVGQPDC----ETGACKYGPTCKYHHPKDRNGAG 117
Query: 123 PVSFNILGLPMRQDEKSCPYYMRTG----------------------------SFLPSSG 154
PV FN+LGLPMRQ EK CPYYM+TG S PS G
Sbjct: 118 PVLFNVLGLPMRQGEKPCPYYMQTGLCRFGVACKFHHPHPHSQPSNGHSAYAMSSFPSVG 177
Query: 155 LQYAGSLPTWSLQRAPYLS---SRLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGPLSP 211
YA + SL A Y + ++ +Q+YMP +V+PSQG++P GW TYM
Sbjct: 178 FPYASGMTMVSLPPATYGAIPRPQVPQSQAYMPYMVAPSQGLLPPQGWATYM-------- 229
Query: 212 TSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKF 271
SN IY+ + Q D + A + + S + ++ +CR++MNTGTCKYG DCK+
Sbjct: 230 ---TASNPIYNMKTQLDSSSSASVAVTVTSHHH--SFSERAECRFFMNTGTCKYGDDCKY 284
Query: 272 HHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDH------------ 319
HPKER+ QS + + P+ LP+RPGQ C N+ YG CKFG C+FDH
Sbjct: 285 SHPKERLLQSPPTLLNPIVLPARPGQPACGNFKAYGFCKFGANCKFDHSMLLNPYNNTGL 344
Query: 320 -------PYAGYP---INYGLSLPPLSILDSSLMNHQ-AISATHSIETSP-DASSKIPNW 367
PY P N +S PP ++L N + A + S+ET D S P
Sbjct: 345 AMSSLPTPYPYAPPVSTNLRISSPPSPSDMTTLSNGKPAAAEAQSLETEKQDDSPTEPEK 404
Query: 368 VQ--------NSDAVSVQHQNPDMKNSTTKNSDDSSKVD 398
+ SD+ S+ + PD + T K DDS+++D
Sbjct: 405 SEVEDSLPPNGSDSTSLPNDKPDAE--TEKQDDDSAELD 441
>sp|Q2R4J4|C3H63_ORYSJ Zinc finger CCCH domain-containing protein 63 OS=Oryza sativa
subsp. japonica GN=Os11g0472000 PE=2 SV=2
Length = 444
Score = 275 bits (703), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 169/410 (41%), Positives = 221/410 (53%), Gaps = 67/410 (16%)
Query: 21 EEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHPA---YAA 77
EEA+W++ + + E G PYP R GEPDC +Y RTGLC +G C+FNHPA A
Sbjct: 36 EEAMWQMNLGEAMEAG------PYPERIGEPDCSYYMRTGLCRFGMTCKFNHPADRKMAV 89
Query: 78 QGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNG-AGPVSFNILGLPMRQD 136
A+ + E P+R GQP+C YYLKTGTCK+G+TCK+HHP+++ A V N LG P+R +
Sbjct: 90 AAARMKGEYPQRIGQPECQYYLKTGTCKFGATCKFHHPREKAAIATRVQLNALGYPLRPN 149
Query: 137 EKSCPYYMRTG-------------------------------SFLPSSGLQYAGSLPTWS 165
EK C YY+RTG S S Y G++ W
Sbjct: 150 EKECAYYLRTGQCKFGSTCKFHHPQPSNTMVAVRGSVYSPGQSVTSPSQHTYPGAVTNWP 209
Query: 166 LQR-APYLSS-RLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGPLSP----TSIAGSNL 219
L R A +++S R G SY +IV P G+V PGWN Y IG S + G+
Sbjct: 210 LSRSASFIASPRWPGHSSYAQVIVPP--GLVQVPGWNPYAAQIGSSSSDDQQRTAGGAQY 267
Query: 220 IYSSR-----NQGDLG------AGAQ-MHILSASSQNL-PERPDQPDCRYYMNTGTCKYG 266
SR N GD G AG+ + + + +++ PERPDQP+C++YM TG CK+G
Sbjct: 268 YTGSRHSETPNMGDQGMFSSYQAGSVPLGLYTVQRESIFPERPDQPECQFYMKTGDCKFG 327
Query: 267 ADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGYPI 326
A CKFHHPKERI + + LGLP RPG+ IC+ YS YGICKFGP C+FDHP +
Sbjct: 328 AVCKFHHPKERIIPTPNCALSSLGLPLRPGEPICTFYSRYGICKFGPNCKFDHPMGT--V 385
Query: 327 NYGLSLPPLSILDSSLMNHQAISATHSIETSPDASSKIPNWVQNSDAVSV 376
YGL+ P D S A HS E SPD S + +SD+ +
Sbjct: 386 MYGLATSPTG--DVSARRMLAPVPAHS-EVSPDNVSGRSRRITHSDSQQI 432
>sp|Q9SWF9|ZFNL_PEA Zinc finger CCCH domain-containing protein ZFN-like OS=Pisum
sativum PE=2 SV=1
Length = 417
Score = 273 bits (697), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 152/358 (42%), Positives = 207/358 (57%), Gaps = 59/358 (16%)
Query: 21 EEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHP---AYAA 77
+EA+W++ + ++ ++ PYP PGEPDC +Y RTGLC +G+ CRFNHP A
Sbjct: 8 QEAMWQMNLRSSE----TMESGPYPEHPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAI 63
Query: 78 QGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNG-AGPVSFNILGLPMRQD 136
A+ + E PER GQP+C YYLKTGTCK+G+TC++HHPKD+ G AG V+ NILG P+R +
Sbjct: 64 ATARMKGEFPERLGQPECQYYLKTGTCKFGATCRFHHPKDKAGVAGRVALNILGYPLRPN 123
Query: 137 EKSCPYYMRTG-------------------------SFLPSS------GLQ-YAGSLPTW 164
E YY+RTG + P+ G Q YA + W
Sbjct: 124 ESERAYYLRTGQCKFGNTCKFHHPQPSNMVLSMRGSTVYPTVQSPTTPGQQSYAAGITNW 183
Query: 165 SLQRAPYL-SSRLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGPLSPTSIAGSNLIYSS 223
S + Y+ S R QG SY PLI+ QG+V PGW+TY G +G SP ++ Y +
Sbjct: 184 S--SSSYVPSPRWQGPSSYAPLIL--PQGVVSVPGWSTYGGQMGSESPQQTMRNDQTYGT 239
Query: 224 RNQGDL-GAGAQ------------MHILSASSQNL-PERPDQPDCRYYMNTGTCKYGADC 269
+QG+L AG Q + + N+ PERPDQP+C++YM TG CK+GA C
Sbjct: 240 SHQGELENAGLQGAYSQYRSGSVPVGFYALQRDNIFPERPDQPECQFYMKTGDCKFGAVC 299
Query: 270 KFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGYPIN 327
+FHHP+ER + + P+GLP RPG+ +C YS YGICKFGP+C+FDHP + N
Sbjct: 300 RFHHPRERQIPAPDCVLSPIGLPLRPGEPLCVFYSRYGICKFGPSCKFDHPMGIFTYN 357
>sp|Q5JLB5|C3H12_ORYSJ Zinc finger CCCH domain-containing protein 12 OS=Oryza sativa
subsp. japonica GN=Os01g0917400 PE=2 SV=2
Length = 439
Score = 268 bits (686), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 148/358 (41%), Positives = 193/358 (53%), Gaps = 58/358 (16%)
Query: 22 EAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHPA---YAAQ 78
E +W+ G G Q PYP R GEPDC +Y RTGLC +G +CRFNHP A
Sbjct: 58 EGMWQ---QMTMSGSGAMQPGPYPERSGEPDCTYYLRTGLCRFGMSCRFNHPQDRNLAIA 114
Query: 79 GAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNG-AGPVSFNILGLPMRQDE 137
A+ + E PER GQP+C YYLKTGTCK+G TCK+HHP+++ G AG V N LG P+R E
Sbjct: 115 SARMKGEYPERMGQPECQYYLKTGTCKFGPTCKFHHPREKAGIAGRVQLNTLGYPLRPSE 174
Query: 138 KSCPYYMRTGS-------------------------FLPS------SGLQYAGSLPTWSL 166
K C YY++TG PS +G Y G++ +W+
Sbjct: 175 KECAYYLKTGQCKYGNTCKFHHPELFNAMASSRGSPIYPSVHSSATAGPPYTGTMASWAF 234
Query: 167 QRAPYLSS-RLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGPLSPTSIA----GSNLIY 221
R ++ S R Q +Y P+IV QG+V P WN+Y G + P+S + G+ Y
Sbjct: 235 PRGSFIPSPRWQNPSNYAPMIVP--QGLVQVPSWNSYTGQMMPVSSSESRLQSPGAQQTY 292
Query: 222 SSRNQGDLGAGAQMHILSASSQN-------------LPERPDQPDCRYYMNTGTCKYGAD 268
+ Q D AG Q + S + PERPDQP+C+YYM TG CK+GA
Sbjct: 293 GTSQQVDASAGNQGMLSPYRSSSYPVPQYALQRENVFPERPDQPECQYYMKTGDCKFGAV 352
Query: 269 CKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGYPI 326
CKFHHP+ R + + P+GLP RPG+ +C YS YGICKFG C+FDHP P+
Sbjct: 353 CKFHHPRVRSMPTPDCVLSPVGLPLRPGEELCKFYSRYGICKFGANCKFDHPTMAPPM 410
>sp|Q2QT65|C3H66_ORYSJ Zinc finger CCCH domain-containing protein 66 OS=Oryza sativa
subsp. japonica GN=Os12g0405100 PE=2 SV=1
Length = 454
Score = 265 bits (677), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 154/383 (40%), Positives = 208/383 (54%), Gaps = 71/383 (18%)
Query: 21 EEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHP---AYAA 77
EEA+W++ + GG +++PYP R GEPDC +Y RTGLC +G C+FNHP A
Sbjct: 44 EEAMWQMTL----GGGESMESTPYPERIGEPDCSYYMRTGLCRFGMTCKFNHPPNRKLAV 99
Query: 78 QGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNG-AGPVSFNILGLPMRQD 136
A+ E P R GQP+C YYLKTGTCK+G+TCK+HHP+++ A V N+LG PMR +
Sbjct: 100 AAARMNGEYPYRVGQPECQYYLKTGTCKFGATCKFHHPREKAALANRVQLNVLGYPMRPN 159
Query: 137 EKSCPYYMRTGSFLPSSGLQ-------------------------------YAGSLPTWS 165
EK C YY+RTG +S + Y G++ W+
Sbjct: 160 EKECAYYLRTGQCKFASTCKFHHPQPSNTMVAVRNSMYSPGQSATSPGQHTYPGAVTNWT 219
Query: 166 LQR-APYLSS-RLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGPLSP------------ 211
L R A +++S R G Y +IV QG+V PGWN Y +G SP
Sbjct: 220 LSRSASFIASPRWPGHSGYAQVIV--PQGLVQVPGWNPYAAQMGSSSPDDQQRTPVTTQY 277
Query: 212 -------TSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNL-PERPDQPDCRYYMNTGTC 263
T G + +Y S G + G + + +N+ PERPDQP+C++YM TG C
Sbjct: 278 YGSRQSETGGMGDHGMYQSYQGGSVPVG----VYTVQGENIFPERPDQPECQFYMKTGDC 333
Query: 264 KYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAG 323
K+GA CKFHHPKER+ + + LGLP RPG+ +C+ YS YGICKFGP C+FDHP
Sbjct: 334 KFGAVCKFHHPKERLVPAPNCALNSLGLPLRPGEPVCTFYSRYGICKFGPNCKFDHPMG- 392
Query: 324 YPINYGLSLPPLSILDSSLMNHQ 346
+ YG + P D S M++Q
Sbjct: 393 -TLMYGSATSPRG--DVSSMHYQ 412
>sp|Q8GXX7|C3H33_ARATH Zinc finger CCCH domain-containing protein 33 OS=Arabidopsis
thaliana GN=ZFN1 PE=1 SV=1
Length = 397
Score = 258 bits (659), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 150/385 (38%), Positives = 213/385 (55%), Gaps = 56/385 (14%)
Query: 21 EEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHP---AYAA 77
++A+W++ + ++ + YP RPGEPDC +Y RTGLC +GS CRFNHP
Sbjct: 18 QDAMWQMNLSSDE----TMETGSYPERPGEPDCSYYIRTGLCRFGSTCRFNHPRDRELVI 73
Query: 78 QGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNG-AGPVSFNILGLPMRQD 136
A+ R E PER GQP+C YYLKTGTCK+G TCK+HHP+++ G AG VS N+LG P+R +
Sbjct: 74 ATARMRGEYPERIGQPECEYYLKTGTCKFGVTCKFHHPRNKAGIAGRVSLNMLGYPLRSN 133
Query: 137 EKSCPYYMRTG-------------------SFLPSSGLQYAGSLPTWSLQRAPYLSS-RL 176
E C Y++RTG +P+SG Q S P WS RA +++S R
Sbjct: 134 EVDCAYFLRTGHCKFGGTCKFNHPQPQPTNMMVPTSGQQ---SYP-WS--RASFIASPRW 187
Query: 177 QGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGPLSPTSIAGSNLIYSSRNQGDLGAGAQMH 236
Q SY LI+ QG+VP GWN Y G +G +SP+ G++ Y + Q +
Sbjct: 188 QDPSSYASLIMP--QGVVPVQGWNPYSGQLGSVSPSG-TGNDQNYRNLQQNETIESGSQS 244
Query: 237 ILSASSQN------------------LPERPDQPDCRYYMNTGTCKYGADCKFHHPKERI 278
S S N PERP QP+C++YM TG CK+G CKFHHP++R
Sbjct: 245 QGSFSGYNPGSSVPLGGYYALPRENVFPERPGQPECQFYMKTGDCKFGTVCKFHHPRDRQ 304
Query: 279 AQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGYPINYGLSLPPLSIL 338
A + +GLP RPG+ +C Y+ YGICKFGP+C+FDHP + + S ++
Sbjct: 305 APPPDCLLSSIGLPLRPGEPLCVFYTRYGICKFGPSCKFDHPMRVFTYDNTASETD-EVV 363
Query: 339 DSSLMNHQAISATHSIETSPDASSK 363
++S + +S + + + + +S K
Sbjct: 364 ETSTGKSRRLSVSETRQAATTSSGK 388
>sp|Q84W91|C3H32_ARATH Zinc finger CCCH domain-containing protein 32 OS=Arabidopsis
thaliana GN=At2g47850 PE=2 SV=2
Length = 468
Score = 226 bits (577), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 130/349 (37%), Positives = 184/349 (52%), Gaps = 61/349 (17%)
Query: 19 NIEEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHP---AY 75
++E++WRL + + YP RPG PDC +Y RTG+CGYG+ CR+NHP A
Sbjct: 27 GLQESMWRLGLGSDS----------YPERPGAPDCAYYMRTGVCGYGNRCRYNHPRDRAS 76
Query: 76 AAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGA-GPVSFNILGLPMR 134
+ + PER G+P C +YLKTGTCK+G++CK+HHPK+ G+ V NI G P+R
Sbjct: 77 VEATVRATGQYPERFGEPPCQFYLKTGTCKFGASCKFHHPKNAGGSMSHVPLNIYGYPVR 136
Query: 135 QDEKSCPYYMRTG----------------------------SFLPSSGL----QYAGSLP 162
+ + C YY++TG F PS QY G
Sbjct: 137 EGDNECSYYLKTGQCKFGITCKFHHPQPAGTTVPPPPASAPQFYPSVQSLMPDQYGGPSS 196
Query: 163 TWSLQRAPYLSSRLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGP-LSP--------TS 213
+ + R S +QG +Y P++++P G+VP PGW+ Y + P LSP TS
Sbjct: 197 SLRVARTLLPGSYMQG--AYGPMLLTP--GVVPIPGWSPYSAPVSPALSPGAQHAVGATS 252
Query: 214 IAGSNLIYSSRNQ--GDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKF 271
+ G + S+ G + + + Q PERP +P+C+YY+ TG CK+G CKF
Sbjct: 253 LYGVTQLTSTTPSLPGVYPSLSSPTGVIQKEQAFPERPGEPECQYYLKTGDCKFGTSCKF 312
Query: 272 HHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHP 320
HHP++R+ A + P+GLP RPG C+ Y G CKFG TC+FDHP
Sbjct: 313 HHPRDRVPPRANCVLSPIGLPLRPGVQRCTFYVQNGFCKFGSTCKFDHP 361
Score = 79.3 bits (194), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 40/94 (42%), Positives = 51/94 (54%), Gaps = 3/94 (3%)
Query: 228 DLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIG 287
D G M L S + PERP PDC YYM TG C YG C+++HP++R S + +
Sbjct: 25 DTGLQESMWRLGLGSDSYPERPGAPDCAYYMRTGVCGYGNRCRYNHPRDR--ASVEATVR 82
Query: 288 PLG-LPSRPGQAICSNYSMYGICKFGPTCRFDHP 320
G P R G+ C Y G CKFG +C+F HP
Sbjct: 83 ATGQYPERFGEPPCQFYLKTGTCKFGASCKFHHP 116
>sp|Q8L7N8|C3H57_ARATH Zinc finger CCCH domain-containing protein 57 OS=Arabidopsis
thaliana GN=ZFN3 PE=2 SV=2
Length = 375
Score = 222 bits (566), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 141/397 (35%), Positives = 199/397 (50%), Gaps = 79/397 (19%)
Query: 21 EEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHP---AYAA 77
+ A+W++ + + G YP R GEPDC +Y RTGLC +GS CRFNHP
Sbjct: 19 QNAMWQMNLGSDDTMGVDGS---YPERHGEPDCAYYIRTGLCRFGSTCRFNHPHDRKLVI 75
Query: 78 QGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGA-GPVSFNILGLPMRQD 136
A+ + E PER GQP+C +YLKTGTCK+G TCK+HHP+++ G G VS N+L P+R +
Sbjct: 76 ATARIKGEYPERIGQPECEFYLKTGTCKFGVTCKFHHPRNKAGIDGSVSVNVLSYPLRPN 135
Query: 137 EKSCPYYMRTG------------------SFLPS-------SGLQYAGSLPTWSLQRAPY 171
E C Y++R G + + S S LQ P++S R +
Sbjct: 136 EDDCSYFLRIGQCKFGGTCKFNHPQTQSTNLMVSVRGSPVYSALQSLTGQPSYSWSRTSF 195
Query: 172 LSS--RLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGPLSPTSIAGSNLIYSSRNQGDL 229
+++ RLQ + S SQG + + G+++ GN PL ++ N+
Sbjct: 196 VANPPRLQDPSGF----ASGSQGGLFSSGFHS--GNSVPLGFYALPRENV---------- 239
Query: 230 GAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPL 289
PERP QP+C++YM TG CK+G CKFHHP++R + +
Sbjct: 240 ---------------FPERPGQPECQFYMKTGDCKFGTVCKFHHPRDRQTPPPDCVLSSV 284
Query: 290 GLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGYPINYGLSLPPLSILDSSLMNHQAIS 349
GLP RPG+ +C YS YGICKFGP+C+FDHP + N + P S SSL AI+
Sbjct: 285 GLPLRPGEPLCVFYSRYGICKFGPSCKFDHPMRVFTYNNNTASPSPS---SSLHQETAIT 341
Query: 350 -------ATHSIETSPDASSKIPNWVQNSDA-VSVQH 378
+ S+E P + +P D V QH
Sbjct: 342 TELRNLLVSSSVEAKP---TSLPETTSAKDTIVDAQH 375
>sp|Q6NPN3|C3H58_ARATH Zinc finger CCCH domain-containing protein 58 OS=Arabidopsis
thaliana GN=At5g18550 PE=2 SV=1
Length = 465
Score = 221 bits (562), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 132/355 (37%), Positives = 183/355 (51%), Gaps = 54/355 (15%)
Query: 13 ANQSADNIEEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNH 72
A + IE ++WRL + +P RP EPDC++Y RTG+CGYGS CRFNH
Sbjct: 22 AQGTETGIEASMWRLGLRGGG-----GGGETFPERPDEPDCIYYLRTGVCGYGSRCRFNH 76
Query: 73 PAYAA--QGAQYRE--ELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNG---AGPVS 125
P A G E E PER GQP C ++++TGTCK+G++CKYHHP+ G PVS
Sbjct: 77 PRNRAPVLGGLRTEAGEFPERMGQPVCQHFMRTGTCKFGASCKYHHPRQGGGGDSVTPVS 136
Query: 126 FNILGLPMRQDEKSCPYYMRTGSFLPSSGLQYAGSLP----------TWSLQRAPYLSSR 175
N +G P+R EK C Y+MRTG S +Y +P L P +
Sbjct: 137 LNYMGFPLRPGEKECSYFMRTGQCKFGSTCRYHHPVPPGVQAPSQQQQQQLSAGPTMYPS 196
Query: 176 LQ-----GTQSYMPLIVSPSQ-------------------GIVPAPGWNTYMGNIGPL-S 210
LQ +Q Y ++ P G+VP GWN Y ++ + S
Sbjct: 197 LQSQTVPSSQQYGVVLARPQLLPGSYVQSPYGYGQMVLPPGMVPYSGWNPYQASVSAMPS 256
Query: 211 PTS--IAGSNLIYS----SRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCK 264
P + G++ +Y S + +G +S Q P+RP+QP+C+Y+M TG CK
Sbjct: 257 PGTQPSMGTSSVYGITPLSPSAPAYQSGPSSTGVSNKEQTFPQRPEQPECQYFMRTGDCK 316
Query: 265 YGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDH 319
+G C+FHHP E A AS + +GLP RPG C++++ +GICKFGP C+FDH
Sbjct: 317 FGTSCRFHHPME-AASPEASTLSHIGLPLRPGAVPCTHFAQHGICKFGPACKFDH 370
>sp|Q9SQU4|C3H34_ARATH Zinc finger CCCH domain-containing protein 34 OS=Arabidopsis
thaliana GN=At3g06410 PE=2 SV=2
Length = 462
Score = 216 bits (549), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 128/354 (36%), Positives = 185/354 (52%), Gaps = 58/354 (16%)
Query: 20 IEEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHPA-YAAQ 78
+E +WRL + GGG ++ YP RP EPDC++Y RTG+CGYGS CRFNHP A
Sbjct: 29 VEAPMWRLGLSGGGGGGGGGES--YPERPDEPDCIYYLRTGVCGYGSRCRFNHPRDRGAV 86
Query: 79 GAQYREE---LPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAG---PVSFNILGLP 132
R E LPER G P C ++++TGTCK+G++CKYHHP+ G G PVS + LG P
Sbjct: 87 IGGVRGEAGALPERMGHPVCQHFMRTGTCKFGASCKYHHPRQGGGGGSVAPVSLSYLGYP 146
Query: 133 MRQDEKSCPYYMRTGSFLPSSGLQYAGSLPT----------------------------- 163
+R EK C YY+RTG ++ +P
Sbjct: 147 LRPGEKECSYYLRTGQCKFGLTCRFNHPVPLAVQGPPQQPQQQQPQPQPQLQTIYPTLQS 206
Query: 164 ----------WSLQRAPYLSSRLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGPL-SPT 212
L R +L+ + P+++ P G+VP GWN Y ++ + SP
Sbjct: 207 QSIPSSQQYGLVLTRPSFLTGSYLQSPYGPPMVLPP--GMVPYSGWNPYQASLSAMPSPG 264
Query: 213 S--IAGSNLIY-----SSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKY 265
+ GS+ IY S G + +++S+ P+RPDQP+C+Y+M TG CK+
Sbjct: 265 TQPSIGSSSIYGLTPLSPSATAYTGTYQSVPSSNSTSKEFPQRPDQPECQYFMRTGDCKF 324
Query: 266 GADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDH 319
G+ C++HHP + + + +GLP RPG A C++++ +GICKFGP C+FDH
Sbjct: 325 GSSCRYHHPVDAVPPKTGIVLSSIGLPLRPGVAQCTHFAQHGICKFGPACKFDH 378
Score = 85.5 bits (210), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 57/95 (60%), Gaps = 3/95 (3%)
Query: 243 QNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSN 302
++ PERPD+PDC YY+ TG C YG+ C+F+HP++R A LP R G +C +
Sbjct: 49 ESYPERPDEPDCIYYLRTGVCGYGSRCRFNHPRDRGAVIGGVRGEAGALPERMGHPVCQH 108
Query: 303 YSMYGICKFGPTCRFDHPYAGYPINYGLSLPPLSI 337
+ G CKFG +C++ HP G G S+ P+S+
Sbjct: 109 FMRTGTCKFGASCKYHHPRQG---GGGGSVAPVSL 140
>sp|Q5RJC5|C3H67_ARATH Zinc finger CCCH domain-containing protein 67 OS=Arabidopsis
thaliana GN=At5g63260 PE=2 SV=2
Length = 435
Score = 211 bits (536), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 119/348 (34%), Positives = 175/348 (50%), Gaps = 46/348 (13%)
Query: 11 AVANQSADNIEEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRF 70
+V + + A++ + +EG YP RP DC FY RTG C YGS+C+F
Sbjct: 65 SVPQGNVETDSRALFGSDQKEEEEGSEKRMMMVYPVRPDSEDCSFYMRTGSCKYGSSCKF 124
Query: 71 NHPA-----YAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPV- 124
NHP + + R+E E +C YY +TG CKYG +C++ H K+ N V
Sbjct: 125 NHPVRRKLQIGRERVRERDEDVENPKLMECKYYFRTGGCKYGESCRFSHMKEHNSPASVP 184
Query: 125 SFNILGLPMRQDEKSCPYYMRTGS------------------------FLPSSGLQYAGS 160
N LGLP+R EK CP+YMR GS + ++G ++
Sbjct: 185 ELNFLGLPIRPGEKECPFYMRNGSCKFGSDCKFNHPDPTAIGGVDSPLYRGNNGGSFSPK 244
Query: 161 LPTWSLQRAPYLSSRLQGTQS--YMPLIVSPSQGIVP-APGWNTYMGNIG------PLSP 211
P+ + + + + GT + ++P + S+G+ P A WN Y + PL+P
Sbjct: 245 APSQASSTSWSSTRHMNGTGTAPFIPSMFPHSRGVTPQASDWNGYQASSAYPPERSPLAP 304
Query: 212 TSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKF 271
+S +N + + + + S + PERPDQP+C YY+ TG CK+ CK+
Sbjct: 305 SSYQVNNSLAET-------SSFSQYQHQMSVEEFPERPDQPECTYYLKTGDCKFKYKCKY 357
Query: 272 HHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDH 319
HHPK R+ + AA + GLP RP Q++C++YS YGICKFGP CRFDH
Sbjct: 358 HHPKNRLPKQAAFSFNDKGLPLRPDQSMCTHYSRYGICKFGPACRFDH 405
Score = 77.0 bits (188), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 44/74 (59%)
Query: 247 ERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMY 306
E P +C+YY TG CKYG C+F H KE + ++ + LGLP RPG+ C Y
Sbjct: 147 ENPKLMECKYYFRTGGCKYGESCRFSHMKEHNSPASVPELNFLGLPIRPGEKECPFYMRN 206
Query: 307 GICKFGPTCRFDHP 320
G CKFG C+F+HP
Sbjct: 207 GSCKFGSDCKFNHP 220
Score = 76.6 bits (187), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 55/97 (56%), Gaps = 2/97 (2%)
Query: 84 EELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDR-NGAGPVSFNILGLPMRQDEKSCPY 142
EE PER QP+C YYLKTG CK+ CKYHHPK+R SFN GLP+R D+ C +
Sbjct: 329 EEFPERPDQPECTYYLKTGDCKFKYKCKYHHPKNRLPKQAAFSFNDKGLPLRPDQSMCTH 388
Query: 143 YMRTGSFLPSSGLQYAGSL-PTWSLQRAPYLSSRLQG 178
Y R G ++ S+ PT+S + + +R G
Sbjct: 389 YSRYGICKFGPACRFDHSIPPTFSPSSSQTVEARQVG 425
Score = 35.4 bits (80), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 289 LGLPSRPGQAICSNYSMYGICKFGPTCRFDHP 320
+ P RP CS Y G CK+G +C+F+HP
Sbjct: 96 MVYPVRPDSEDCSFYMRTGSCKYGSSCKFNHP 127
>sp|Q5NAV3|C3H5_ORYSJ Zinc finger CCCH domain-containing protein 5 OS=Oryza sativa subsp.
japonica GN=Os01g0257400 PE=2 SV=1
Length = 466
Score = 209 bits (531), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 148/395 (37%), Positives = 197/395 (49%), Gaps = 83/395 (21%)
Query: 20 IEEAIWRLKIHDNQEGGGVAQAS-PYPARPGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQ 78
+EE++WR+ + GGG A A+ P RPGE DC++Y RTG CGYG NCR+NHP A
Sbjct: 23 LEESMWRMGLGGGGGGGGEAVAAGRLPERPGEADCVYYLRTGACGYGENCRYNHPRDRAA 82
Query: 79 GA--------QYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSFNILG 130
A + E PER GQP C YY+K GTCK+GS CKY HP++ V N G
Sbjct: 83 AAVLNGGGKTTHSAEYPERPGQPVCEYYMKNGTCKFGSNCKYDHPRE-GSVQAVMLNSSG 141
Query: 131 LPMRQDEKSCPYYMRTGSFLPSSGLQYA----------------------------GSLP 162
P+R EK C YY++TG S ++ L
Sbjct: 142 YPLRSGEKDCTYYVKTGHCKFGSTCKFHHPEIGGVSETPNMYPPVQPQPISSSHPYQHLA 201
Query: 163 TWSLQRAPYL-SSRLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGPLSPTSIAGSNL-- 219
W + R P L S L G SY P+++ PS +VP GWN Y I P++ + AG +
Sbjct: 202 GWQMGRPPVLPGSFLSG--SYPPMML-PST-VVPMQGWNPY---ISPVNQVASAGGHQTV 254
Query: 220 ----IYSSRNQGDLGA---GAQMHILSASSQN---------LPERPDQPDCRYYMNTGTC 263
Y +QG A G+Q LS+S+ P RP QP+C+YY+ TG+C
Sbjct: 255 QAGPFYGLSHQGPSAAVTYGSQYAPLSSSTMPSSSSKQEPAFPARPGQPECQYYLKTGSC 314
Query: 264 KYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPY-- 321
K+G+ CK+HHP+ + + PLGLP RPG C+ Y+ +G CKFGPTC+FDHP
Sbjct: 315 KFGSACKYHHPQYLNTPKSNCMLSPLGLPLRPGSQPCAYYTQHGFCKFGPTCKFDHPMGT 374
Query: 322 ---------------AGYPINYGLS--LPPLSILD 339
A YP+NY ++ PP S D
Sbjct: 375 LSYSPSASSITDLPIAPYPLNYAVAPVAPPSSSSD 409
>sp|Q9STM4|C3H43_ARATH Zinc finger CCCH domain-containing protein 43 OS=Arabidopsis
thaliana GN=At3g48440 PE=1 SV=1
Length = 448
Score = 208 bits (529), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 120/316 (37%), Positives = 167/316 (52%), Gaps = 45/316 (14%)
Query: 44 YPARPGEPDCLFYRRTGLCGYGSNCRFNHPA----YAAQGAQYREELPE--RNGQPDCGY 97
YP RPG DC FY RTG C +GS+C+FNHP A+ + RE+ + + G DC Y
Sbjct: 107 YPVRPGAEDCSFYMRTGSCKFGSSCKFNHPLARKFQIARDNKVREKEDDGGKLGLIDCKY 166
Query: 98 YLKTGTCKYGSTCKYHHPKDRNG-AGPVSFNILGLPMRQDEKSCPYYMRTG--------- 147
Y +TG CKYG TC+++H ++G A N LGLP+R E CPYYMR G
Sbjct: 167 YFRTGGCKYGETCRFNHTIPKSGLASAPELNFLGLPLRPGEVECPYYMRNGSCKYGAECK 226
Query: 148 ---------------SFLPSSGLQYAGSLPTWSLQRAPYLSS---RLQGTQSYMPLIVSP 189
SF ++G+ P + Q + S + GT ++P+++S
Sbjct: 227 FNHPDPTTIGGTDSPSFRGNNGVSIGTFSPKATFQASSTSWSSPRHVNGTSPFIPVMLSQ 286
Query: 190 SQGIVPA-PGWNTYMGNI-----GPLSPTSIAGSNLIYSSRNQGDLGAGAQMHILSASSQ 243
+ G+ P WN Y ++ G SP++ + L+ +S + + H + A +
Sbjct: 287 THGVTSQNPEWNGYQASVYSSERGVFSPST---TYLMNNSSAETSMLLSQYRHQMPA--E 341
Query: 244 NLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNY 303
PERPDQP+C YYM TG CK+ +CK+HHPK R+ + + GLP RP Q IC+ Y
Sbjct: 342 EFPERPDQPECSYYMKTGDCKFKFNCKYHHPKNRLPKLPPYALNDKGLPLRPDQNICTYY 401
Query: 304 SMYGICKFGPTCRFDH 319
S YGICKFGP CRFDH
Sbjct: 402 SRYGICKFGPACRFDH 417
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 42/68 (61%)
Query: 253 DCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFG 312
DC+YY TG CKYG C+F+H + ++A + LGLP RPG+ C Y G CK+G
Sbjct: 163 DCKYYFRTGGCKYGETCRFNHTIPKSGLASAPELNFLGLPLRPGEVECPYYMRNGSCKYG 222
Query: 313 PTCRFDHP 320
C+F+HP
Sbjct: 223 AECKFNHP 230
Score = 40.8 bits (94), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 292 PSRPGQAICSNYSMYGICKFGPTCRFDHPYA 322
P RPG CS Y G CKFG +C+F+HP A
Sbjct: 108 PVRPGAEDCSFYMRTGSCKFGSSCKFNHPLA 138
>sp|Q5NAW2|C3H6_ORYSJ Zinc finger CCCH domain-containing protein 6 OS=Oryza sativa subsp.
japonica GN=Os01g0258700 PE=2 SV=2
Length = 476
Score = 202 bits (514), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 127/346 (36%), Positives = 174/346 (50%), Gaps = 59/346 (17%)
Query: 45 PARPGEPDCLFYRRTGLCGYGSNCRFNHP-----AYAAQGAQYREEL--PERNGQPDCGY 97
P RPGE DC++Y RTG CG+G CR+NHP GA+ L PER GQP C Y
Sbjct: 57 PERPGEEDCVYYLRTGACGFGDRCRYNHPRDRGGTEFGGGARNAAALDYPERAGQPICEY 116
Query: 98 YLKTGTCKYGSTCKYHHPKDRNGAGPVSFNILGLPMRQDEKSCPYYMRTGSFLPSSGLQY 157
Y+KTGTCK+G+ CKYHHPK PV N G P+R EK C YYM+TG + ++
Sbjct: 117 YMKTGTCKFGTNCKYHHPKQDGAVLPVMLNNSGFPIRLGEKECSYYMKTGQCKFGTTCKF 176
Query: 158 ----------------------------AGSLPTWSLQRAPYL-SSRLQGTQSYMPLIVS 188
SL W + R P + S + G SY P+++S
Sbjct: 177 HHPEFGGVPMTPGIYPPLQSPSIASPHPYASLANWQMGRPPVVPGSYIPG--SYTPMMLS 234
Query: 189 PSQGIVPAPGWNTYMGNIGPLSPTSIAGSNL----IYSSRNQGDLG----AGAQMHILSA 240
G++P GW+ Y ++ P+ + A N+ +Y + G G + S+
Sbjct: 235 --SGMIPLQGWSPYPASVNPVV-SGGAQQNVQAGPVYGMGHHGSSSTIAYGGPYVPYASS 291
Query: 241 SSQN--------LPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLP 292
+ Q+ PERP QPDC+YYM TG CK+GA CK+HHP+E A + + L LP
Sbjct: 292 TGQSSNNQQEHGFPERPGQPDCQYYMRTGDCKFGATCKYHHPRELSAPKSGYMVNSLCLP 351
Query: 293 SRPGQAICSNYSMYGICKFGPTCRFDHPYAGYPINYGLSLPPLSIL 338
RPG C+ Y+ G C++G C++DHP + Y S PLS +
Sbjct: 352 LRPGAQPCAYYAQNGYCRYGVACKYDHPMGT--LGYSPSALPLSDM 395
Score = 75.1 bits (183), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 53/94 (56%), Gaps = 4/94 (4%)
Query: 44 YPARPGEPDCLFYRRTGLCGYGSNCRFNHP-AYAAQGAQYREE---LPERNGQPDCGYYL 99
+P RPG+PDC +Y RTG C +G+ C+++HP +A + Y LP R G C YY
Sbjct: 304 FPERPGQPDCQYYMRTGDCKFGATCKYHHPRELSAPKSGYMVNSLCLPLRPGAQPCAYYA 363
Query: 100 KTGTCKYGSTCKYHHPKDRNGAGPVSFNILGLPM 133
+ G C+YG CKY HP G P + + +P+
Sbjct: 364 QNGYCRYGVACKYDHPMGTLGYSPSALPLSDMPI 397
>sp|Q941Q3|C3H37_ARATH Zinc finger CCCH domain-containing protein 37 OS=Arabidopsis
thaliana GN=HUA1 PE=1 SV=1
Length = 524
Score = 171 bits (433), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 108/312 (34%), Positives = 151/312 (48%), Gaps = 69/312 (22%)
Query: 44 YPARPGEPDCLFYRRTGLCGYGSNCRFNHP-AYAAQGAQYREELPERNGQPDCGYYLKTG 102
YP RPGEPDC +Y +T C YGS C+FNHP AA + ++ LPER +P C +Y+KTG
Sbjct: 222 YPERPGEPDCPYYIKTQRCKYGSKCKFNHPREEAAVSVETQDSLPERPSEPMCTFYMKTG 281
Query: 103 TCKYGSTCKYHHPKDRNGAGP---------------------VSF------NILGLPMRQ 135
CK+G +CK+HHPKD V+F N GLP+R
Sbjct: 282 KCKFGLSCKFHHPKDIQLPSSSQDIGSSVGLTSEPDATNNPHVTFTPALYHNSKGLPVRS 341
Query: 136 DEKSCPYYMRTGSFLPSSGLQYAGSLPTWSLQRAPYLSSRLQGTQSYMPLIVSPSQGIVP 195
E CP+Y++TGS +Y + +R +++P + +V
Sbjct: 342 GEVDCPFYLKTGS------CKYGATCRYNHPERT-----------AFIPQAAGVNYSLVS 384
Query: 196 APGWNTYMGNIGPLSPTSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCR 255
+ NT N+G ++P + Y + Q LG ++SA+ P+RP Q +C
Sbjct: 385 S---NTANLNLGLVTP-----ATSFYQTLTQPTLG------VISAT---YPQRPGQSECD 427
Query: 256 YYMNTGTCKYGADCKFHHPKERIA-------QSAASNIGPLGLPSRPGQAICSNYSMYGI 308
YYM TG CK+G CKFHHP +R++ Q + G P R G C Y G
Sbjct: 428 YYMKTGECKFGERCKFHHPADRLSAMTKQAPQQPNVKLSLAGYPRREGALNCPYYMKTGT 487
Query: 309 CKFGPTCRFDHP 320
CK+G TC+FDHP
Sbjct: 488 CKYGATCKFDHP 499
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/223 (30%), Positives = 90/223 (40%), Gaps = 62/223 (27%)
Query: 132 PMRQDEKSCPYYM--RTGSFLPSSGLQY-----AGSLPTWSLQRAPYLSSRLQGTQSYMP 184
P R EK C +YM RT F S + G +P W + AP
Sbjct: 172 PQRAGEKDCTHYMQTRTCKFGESCRFDHPIWVPEGGIPDW--KEAP-------------- 215
Query: 185 LIVSPSQGIVPAPGWNTYMGNIGPLSPTSIAGSNLIYSSRNQGDLGAGAQMHILSASSQN 244
V P++ PG P P I Y S+ + + +S +Q+
Sbjct: 216 --VVPNEEYPERPG--------EPDCPYYIKTQRCKYGSKCK--FNHPREEAAVSVETQD 263
Query: 245 -LPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIG---------------- 287
LPERP +P C +YM TG CK+G CKFHHPK+ S++ +IG
Sbjct: 264 SLPERPSEPMCTFYMKTGKCKFGLSCKFHHPKDIQLPSSSQDIGSSVGLTSEPDATNNPH 323
Query: 288 ----------PLGLPSRPGQAICSNYSMYGICKFGPTCRFDHP 320
GLP R G+ C Y G CK+G TCR++HP
Sbjct: 324 VTFTPALYHNSKGLPVRSGEVDCPFYLKTGSCKYGATCRYNHP 366
Score = 79.3 bits (194), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 41/90 (45%), Positives = 54/90 (60%), Gaps = 12/90 (13%)
Query: 37 GVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHPA--------YAAQGAQYREEL-- 86
GV A+ YP RPG+ +C +Y +TG C +G C+F+HPA A Q + L
Sbjct: 411 GVISAT-YPQRPGQSECDYYMKTGECKFGERCKFHHPADRLSAMTKQAPQQPNVKLSLAG 469
Query: 87 -PERNGQPDCGYYLKTGTCKYGSTCKYHHP 115
P R G +C YY+KTGTCKYG+TCK+ HP
Sbjct: 470 YPRREGALNCPYYMKTGTCKYGATCKFDHP 499
>sp|Q2QTY2|C3H65_ORYSJ Zinc finger CCCH domain-containing protein 65 OS=Oryza sativa
subsp. japonica GN=Os12g0278800 PE=2 SV=1
Length = 529
Score = 151 bits (382), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 91/281 (32%), Positives = 135/281 (48%), Gaps = 39/281 (13%)
Query: 83 REELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNG---AGPVSFNILGLPMRQDEKS 139
+E + E + Q +C YY G CK+G CKY H + G A V N LGLP+R EK
Sbjct: 231 KEFISEGSSQEECKYYSTPGGCKFGKACKYLHRDGKEGKTDAEKVDLNFLGLPLRPGEKE 290
Query: 140 CPYYMRTGSFLPSSGLQYAGSLPTWSLQRAPYLSSR--------LQGTQS---------- 181
CPYYMRTGS ++ ++ P+ + P L +QG+ S
Sbjct: 291 CPYYMRTGSCKYATNCKFHHPDPSNVASKDPQLEHENGDAPQQDVQGSSSQPNASIWPDQ 350
Query: 182 ------YMPLI---------VSPSQGIVPAPGWNTY-MGNIGPLSPTSIAGSNLIYSSRN 225
++P I + P QG+ P P WN Y + P P + + + N
Sbjct: 351 RTVNEHHVPFIAPSPSYSAGMLPPQGMYPPPEWNGYHQVPLNPYYPPGVPFQHFPAAPIN 410
Query: 226 QGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASN 285
A S+ PERP QP+C++++ +G CK+ CK+HHP+ + + A
Sbjct: 411 HPMYKAPEIPGHQQVPSEEYPERPGQPECQHFVKSGFCKFRMKCKYHHPRSPVPPAGA-- 468
Query: 286 IGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGYPI 326
+ PLGLP +P Q +C+ Y YG+CKFGP C ++HP+ P+
Sbjct: 469 LSPLGLPIKPDQPVCTYYGRYGVCKFGPACAYNHPFNFSPV 509
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 44 YPARPGEPDCLFYRRTGLCGYGSNCRFNHP--AYAAQGAQYREELPERNGQPDCGYYLKT 101
YP RPG+P+C + ++G C + C+++HP GA LP + QP C YY +
Sbjct: 430 YPERPGQPECQHFVKSGFCKFRMKCKYHHPRSPVPPAGALSPLGLPIKPDQPVCTYYGRY 489
Query: 102 GTCKYGSTCKYHHP 115
G CK+G C Y+HP
Sbjct: 490 GVCKFGPACAYNHP 503
Score = 49.3 bits (116), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 44 YPARPGEPDCLFYRRTGLCGYGSNCRFNHPA 74
+P RPGEPDC +Y + G C +G C+FNHPA
Sbjct: 105 FPRRPGEPDCTYYVKFGSCRFGMKCKFNHPA 135
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 25/37 (67%)
Query: 83 REELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRN 119
R P R G+PDC YY+K G+C++G CK++HP +
Sbjct: 102 RPRFPRRPGEPDCTYYVKFGSCRFGMKCKFNHPARKK 138
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 241 SSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKER 277
S P RP +PDC YY+ G+C++G CKF+HP +
Sbjct: 101 SRPRFPRRPGEPDCTYYVKFGSCRFGMKCKFNHPARK 137
Score = 45.4 bits (106), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 22/29 (75%)
Query: 45 PARPGEPDCLFYRRTGLCGYGSNCRFNHP 73
P RPGE +C +Y RTG C Y +NC+F+HP
Sbjct: 283 PLRPGEKECPYYMRTGSCKYATNCKFHHP 311
Score = 40.0 bits (92), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 291 LPSRPGQAICSNYSMYGICKFGPTCRFDHP 320
P RPG+ C+ Y +G C+FG C+F+HP
Sbjct: 105 FPRRPGEPDCTYYVKFGSCRFGMKCKFNHP 134
>sp|Q5ZDJ6|C3H8_ORYSJ Zinc finger CCCH domain-containing protein 8 OS=Oryza sativa subsp.
japonica GN=Os01g0616400 PE=2 SV=2
Length = 462
Score = 147 bits (372), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 110/348 (31%), Positives = 154/348 (44%), Gaps = 72/348 (20%)
Query: 44 YPARPGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQG---------AQYREELPERNGQPD 94
YP RPGE DC FY T C +G +C+F+HP + +G A E PE+ G+PD
Sbjct: 102 YPQRPGEKDCAFYMMTRTCKFGGSCKFDHPQWVPEGGIPNWKEQAANVEESYPEQEGEPD 161
Query: 95 CGYYLKTGTCKYGSTCKYHHPKDRNGA---GPVSFNIL-----GLPMRQDEKSCPYYMRT 146
C +++KTG CK+GS CK++HPK++ A G + L LP+R E C +Y +T
Sbjct: 162 CPFFMKTGKCKFGSKCKFNHPKEKVNALASGNTNDKHLIADSSILPVRPSEPLCSFYAKT 221
Query: 147 G--SFLPSSGLQYAGSLPTWSLQRAPYLSSRLQG----------TQSYMPLIVSPSQ--- 191
G F + + S Q P + ++G + M V+ +Q
Sbjct: 222 GKCKFRAMCKFNHPKDIEIPSSQNEPESAVTVEGETDIGSAADSVSAKMQTPVAAAQEFN 281
Query: 192 --GIVPAPG-----WNTYMGNIG-------------------PLSPTSIAG--SNLIYSS 223
G+ PG + MG+ PL T + S L+ SS
Sbjct: 282 SKGLPMRPGEVDCPFYMKMGSCKFGSTCRFNHPDRLVLNFPLPLGQTILPTPESMLLNSS 341
Query: 224 RN--QGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQS 281
N QG A M + P+RP C +YM TG CK+ CKFHHP +R A
Sbjct: 342 ANFMQGFDFHAAHMPV-GPGPVTYPQRPGATVCDFYMKTGFCKFADRCKFHHPIDRSAPD 400
Query: 282 AASNIGP---------LGLPSRPGQAICSNYSMYGICKFGPTCRFDHP 320
++N P GLP R +C+ Y G+CKFG C+FDHP
Sbjct: 401 PSANWEPAEESVQLTLAGLPRREDAVVCAFYMKTGVCKFGMQCKFDHP 448
Score = 96.3 bits (238), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 86/318 (27%), Positives = 126/318 (39%), Gaps = 83/318 (26%)
Query: 44 YPARPGEPDCLFYRRTGLCGYGSNCRFNHP-----AYAAQGAQYREE------LPERNGQ 92
YP + GEPDC F+ +TG C +GS C+FNHP A A+ + LP R +
Sbjct: 153 YPEQEGEPDCPFFMKTGKCKFGSKCKFNHPKEKVNALASGNTNDKHLIADSSILPVRPSE 212
Query: 93 PDCGYYLKTGTCKYGSTCKYHHPKDR----------------------NGAGPVS----- 125
P C +Y KTG CK+ + CK++HPKD + A VS
Sbjct: 213 PLCSFYAKTGKCKFRAMCKFNHPKDIEIPSSQNEPESAVTVEGETDIGSAADSVSAKMQT 272
Query: 126 -------FNILGLPMRQDEKSCPYYMRTGSFLPSSGLQYAGSLPTWSLQRAPYLSSRLQG 178
FN GLPMR E CP F G GS ++ L+ L
Sbjct: 273 PVAAAQEFNSKGLPMRPGEVDCP-------FYMKMGSCKFGSTCRFNHPDRLVLNFPLPL 325
Query: 179 TQSYMP----LIVSPSQGIVPAPGWNTYMGNI----GPLSPTSIAGSNL--IYSSRNQGD 228
Q+ +P ++++ S + G++ + ++ GP++ G+ + Y
Sbjct: 326 GQTILPTPESMLLNSSANFMQ--GFDFHAAHMPVGPGPVTYPQRPGATVCDFYMKTGFCK 383
Query: 229 LGAGAQMH-------------------ILSASSQNLPERPDQPDCRYYMNTGTCKYGADC 269
+ H + + LP R D C +YM TG CK+G C
Sbjct: 384 FADRCKFHHPIDRSAPDPSANWEPAEESVQLTLAGLPRREDAVVCAFYMKTGVCKFGMQC 443
Query: 270 KFHHPKERIAQSAASNIG 287
KF HP + A + SN G
Sbjct: 444 KFDHPPPQEAIAKVSNSG 461
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 75/259 (28%), Positives = 97/259 (37%), Gaps = 62/259 (23%)
Query: 132 PMRQDEKSCPYYM--RTGSFLPSSGLQY-----AGSLPTWSLQRAPYLSSRLQGTQSYMP 184
P R EK C +YM RT F S + G +P W Q A +SY
Sbjct: 103 PQRPGEKDCAFYMMTRTCKFGGSCKFDHPQWVPEGGIPNWKEQAA-------NVEESY-- 153
Query: 185 LIVSPSQGIVPAPGWNTYMGNIGPLSPTSIAGSNLIYSSRNQGDLGAGAQMHILSASSQN 244
P Q P + G S N N G H++ A S
Sbjct: 154 ----PEQEGEPD---CPFFMKTGKCKFGSKCKFNHPKEKVNALASGNTNDKHLI-ADSSI 205
Query: 245 LPERPDQPDCRYYMNTGTCKYGADCKFHHPKE---------------------------- 276
LP RP +P C +Y TG CK+ A CKF+HPK+
Sbjct: 206 LPVRPSEPLCSFYAKTGKCKFRAMCKFNHPKDIEIPSSQNEPESAVTVEGETDIGSAADS 265
Query: 277 -----RIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHP---YAGYPINY 328
+ +AA GLP RPG+ C Y G CKFG TCRF+HP +P+
Sbjct: 266 VSAKMQTPVAAAQEFNSKGLPMRPGEVDCPFYMKMGSCKFGSTCRFNHPDRLVLNFPLPL 325
Query: 329 GLSLPPLSILDSSLMNHQA 347
G ++ P +S L+N A
Sbjct: 326 GQTILPTP--ESMLLNSSA 342
Score = 68.9 bits (167), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 65/152 (42%), Gaps = 41/152 (26%)
Query: 38 VAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHPA----------------------- 74
+A +S P RP EP C FY +TG C + + C+FNHP
Sbjct: 200 IADSSILPVRPSEPLCSFYAKTGKCKFRAMCKFNHPKDIEIPSSQNEPESAVTVEGETDI 259
Query: 75 --------------YAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDR-- 118
AA + LP R G+ DC +Y+K G+CK+GSTC+++HP DR
Sbjct: 260 GSAADSVSAKMQTPVAAAQEFNSKGLPMRPGEVDCPFYMKMGSCKFGSTCRFNHP-DRLV 318
Query: 119 -NGAGPVSFNILGLPMRQDEKSCPYYMRTGSF 149
N P+ IL P S +M+ F
Sbjct: 319 LNFPLPLGQTILPTPESMLLNSSANFMQGFDF 350
Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 46/94 (48%), Gaps = 17/94 (18%)
Query: 238 LSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHP-----------KERIAQSAASNI 286
L +S P+RP + DC +YM T TCK+G CKF HP KE+ A S
Sbjct: 95 LESSLPIYPQRPGEKDCAFYMMTRTCKFGGSCKFDHPQWVPEGGIPNWKEQAANVEES-- 152
Query: 287 GPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHP 320
P + G+ C + G CKFG C+F+HP
Sbjct: 153 ----YPEQEGEPDCPFFMKTGKCKFGSKCKFNHP 182
>sp|Q5Z5Q3|C3H43_ORYSJ Zinc finger CCCH domain-containing protein 43 OS=Oryza sativa
subsp. japonica GN=Os06g0520600 PE=2 SV=1
Length = 711
Score = 95.1 bits (235), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 67/130 (51%), Gaps = 26/130 (20%)
Query: 44 YPARPGEPDCLFYRRTGLCGYGSNCRFNHP----AYAAQGAQYREELPERNGQPDCGYYL 99
+P RPGEPDC +Y + G C +G +C +NHP + A + E+ P R G+PDC YY+
Sbjct: 41 HPRRPGEPDCSYYVKFGSCKFGISCVYNHPDPRPQHGADDKKPAEQFPRRPGEPDCSYYV 100
Query: 100 KTGTCKYGSTCKYHHP----------------------KDRNGAGPVSFNILGLPMRQDE 137
K G+CK+G C+++HP + ++ V N+LGLP+R
Sbjct: 101 KFGSCKFGMNCRFNHPPRMPVPPQQEYFSGNACHCHHIEGKSKVEQVKLNVLGLPLRPGT 160
Query: 138 KSCPYYMRTG 147
C YYM G
Sbjct: 161 GLCSYYMNRG 170
Score = 83.6 bits (205), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 53/103 (51%), Gaps = 21/103 (20%)
Query: 242 SQNLPERPDQPDCRYYMNTGTCKYGADCKFHHP---------------------KERIAQ 280
++ P RP +PDC YY+ G+CK+G +C+F+HP E ++
Sbjct: 84 AEQFPRRPGEPDCSYYVKFGSCKFGMNCRFNHPPRMPVPPQQEYFSGNACHCHHIEGKSK 143
Query: 281 SAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAG 323
+ LGLP RPG +CS Y GICKFG C+FDHP G
Sbjct: 144 VEQVKLNVLGLPLRPGTGLCSYYMNRGICKFGTNCKFDHPDPG 186
Score = 78.2 bits (191), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 43/75 (57%)
Query: 246 PERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSM 305
P RP +PDC YY+ G+CK+G C ++HP R A P RPG+ CS Y
Sbjct: 42 PRRPGEPDCSYYVKFGSCKFGISCVYNHPDPRPQHGADDKKPAEQFPRRPGEPDCSYYVK 101
Query: 306 YGICKFGPTCRFDHP 320
+G CKFG CRF+HP
Sbjct: 102 FGSCKFGMNCRFNHP 116
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 48/100 (48%), Gaps = 25/100 (25%)
Query: 41 ASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHP------------------AYAAQGAQY 82
A +P RPGEPDC +Y + G C +G NCRFNHP + +G
Sbjct: 84 AEQFPRRPGEPDCSYYVKFGSCKFGMNCRFNHPPRMPVPPQQEYFSGNACHCHHIEGKSK 143
Query: 83 REE-------LPERNGQPDCGYYLKTGTCKYGSTCKYHHP 115
E+ LP R G C YY+ G CK+G+ CK+ HP
Sbjct: 144 VEQVKLNVLGLPLRPGTGLCSYYMNRGICKFGTNCKFDHP 183
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 50/103 (48%), Gaps = 2/103 (1%)
Query: 48 PGEPDCLFYRRT-GLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKY 106
P + D + R T + G G P A + + E+ P R G+PDC YY+K G+CK+
Sbjct: 2 PQDDDWFWGRPTPVVVGDGETTSKPKPPVAGKTKKVEEQHPRRPGEPDCSYYVKFGSCKF 61
Query: 107 GSTCKYHHPKDRNGAGPVSFN-ILGLPMRQDEKSCPYYMRTGS 148
G +C Y+HP R G P R E C YY++ GS
Sbjct: 62 GISCVYNHPDPRPQHGADDKKPAEQFPRRPGEPDCSYYVKFGS 104
>sp|Q3ECU8|C3H13_ARATH Zinc finger CCCH domain-containing protein 13 OS=Arabidopsis
thaliana GN=At1g48195 PE=4 SV=1
Length = 82
Score = 93.2 bits (230), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 40/79 (50%), Positives = 51/79 (64%)
Query: 241 SSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAIC 300
S + PERP +P+C YY+ TG C +CK+HHPK + GLP RPGQAIC
Sbjct: 2 SEEKFPERPGEPECSYYLRTGNCYLKQNCKYHHPKNITPSEPQCTLNDKGLPLRPGQAIC 61
Query: 301 SNYSMYGICKFGPTCRFDH 319
+YS +GIC+ GPTC+FDH
Sbjct: 62 PHYSRFGICRSGPTCKFDH 80
Score = 65.9 bits (159), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 84 EELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGP-VSFNILGLPMRQDEKSCPY 142
E+ PER G+P+C YYL+TG C CKYHHPK+ + P + N GLP+R + CP+
Sbjct: 4 EKFPERPGEPECSYYLRTGNCYLKQNCKYHHPKNITPSEPQCTLNDKGLPLRPGQAICPH 63
Query: 143 YMRTG 147
Y R G
Sbjct: 64 YSRFG 68
Score = 59.7 bits (143), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Query: 44 YPARPGEPDCLFYRRTGLCGYGSNCRFNHPAYAA----QGAQYREELPERNGQPDCGYYL 99
+P RPGEP+C +Y RTG C NC+++HP Q + LP R GQ C +Y
Sbjct: 6 FPERPGEPECSYYLRTGNCYLKQNCKYHHPKNITPSEPQCTLNDKGLPLRPGQAICPHYS 65
Query: 100 KTGTCKYGSTCKYHH 114
+ G C+ G TCK+ H
Sbjct: 66 RFGICRSGPTCKFDH 80
>sp|Q0DBW8|C3H42_ORYSJ Zinc finger CCCH domain-containing protein 42 OS=Oryza sativa
subsp. japonica GN=Os06g0519400 PE=2 SV=1
Length = 279
Score = 92.0 bits (227), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 51/135 (37%), Positives = 65/135 (48%), Gaps = 22/135 (16%)
Query: 34 EGGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQP 93
E + YP RPG PDC +Y G C +G C +NHPA A G + E P+R G+
Sbjct: 66 EPKAAVEPQEYPRRPGVPDCSYYVEFGSCKFGMRCLYNHPAKHAGGCD-KLEHPQRPGEH 124
Query: 94 DCGYYLKTGTCKYGSTCKYHHPKDR---------------------NGAGPVSFNILGLP 132
DC +YL+ G CKYG C+++HP DR + A V N LGLP
Sbjct: 125 DCLHYLRFGRCKYGMNCRFNHPPDRLPQQQVYFPWKACHCHHSEGKSEAEHVKLNFLGLP 184
Query: 133 MRQDEKSCPYYMRTG 147
+R C YYM G
Sbjct: 185 LRPGTGLCSYYMNRG 199
Score = 79.7 bits (195), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 68/144 (47%), Gaps = 34/144 (23%)
Query: 246 PERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAA--------------------SN 285
P+RP + DC +Y+ G CKYG +C+F+HP +R+ Q
Sbjct: 118 PQRPGEHDCLHYLRFGRCKYGMNCRFNHPPDRLPQQQVYFPWKACHCHHSEGKSEAEHVK 177
Query: 286 IGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGY------------PINYGLSLP 333
+ LGLP RPG +CS Y GICKFG C+F HP +G I+ G+++
Sbjct: 178 LNFLGLPLRPGTGLCSYYMNRGICKFGSNCKFHHPNSGSGHEKWDGSLQTNQISSGVNI- 236
Query: 334 PLSILDSSLMNHQAISATHSIETS 357
S+LD +N Q + + + S
Sbjct: 237 -YSVLDHGELNEQPVPSKDDFQVS 259
Score = 75.9 bits (185), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 55/118 (46%), Gaps = 25/118 (21%)
Query: 27 LKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHP------------- 73
L H + GG + +P RPGE DCL Y R G C YG NCRFNHP
Sbjct: 101 LYNHPAKHAGGCDKLE-HPQRPGEHDCLHYLRFGRCKYGMNCRFNHPPDRLPQQQVYFPW 159
Query: 74 ----AYAAQGAQYREE-------LPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNG 120
+ ++G E LP R G C YY+ G CK+GS CK+HHP +G
Sbjct: 160 KACHCHHSEGKSEAEHVKLNFLGLPLRPGTGLCSYYMNRGICKFGSNCKFHHPNSGSG 217
Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 44/78 (56%), Gaps = 5/78 (6%)
Query: 243 QNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSN 302
Q P RP PDC YY+ G+CK+G C ++HP + A L P RPG+ C +
Sbjct: 74 QEYPRRPGVPDCSYYVEFGSCKFGMRCLYNHPAKH-----AGGCDKLEHPQRPGEHDCLH 128
Query: 303 YSMYGICKFGPTCRFDHP 320
Y +G CK+G CRF+HP
Sbjct: 129 YLRFGRCKYGMNCRFNHP 146
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 74/191 (38%), Gaps = 52/191 (27%)
Query: 84 EELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSFNILGLPMRQDEKSCPYY 143
+E P R G PDC YY++ G+CK+G C Y+HP G + L P R E C +
Sbjct: 74 QEYPRRPGVPDCSYYVEFGSCKFGMRCLYNHPAKHAGG----CDKLEHPQRPGEHDCLH- 128
Query: 144 MRTGSFLPSSGLQYAGSLPTWSLQRAPYLSSRLQGTQSYMPLIVSPSQGIVPAPGWNTYM 203
+L +Y + R + RL Q Y P W
Sbjct: 129 -----YLRFGRCKYGMNC------RFNHPPDRLPQQQVYFP--------------WKA-- 161
Query: 204 GNIGPLSPTSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTC 263
+ ++G ++ + + LP RP C YYMN G C
Sbjct: 162 ----------------CHCHHSEGK----SEAEHVKLNFLGLPLRPGTGLCSYYMNRGIC 201
Query: 264 KYGADCKFHHP 274
K+G++CKFHHP
Sbjct: 202 KFGSNCKFHHP 212
Score = 37.4 bits (85), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 20/35 (57%)
Query: 286 IGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHP 320
+ P P RPG CS Y +G CKFG C ++HP
Sbjct: 71 VEPQEYPRRPGVPDCSYYVEFGSCKFGMRCLYNHP 105
>sp|Q9C7P1|C3H10_ARATH Putative zinc finger CCCH domain-containing protein 10
OS=Arabidopsis thaliana GN=At1g29600/At1g29610 PE=2 SV=2
Length = 389
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 49/81 (60%), Gaps = 13/81 (16%)
Query: 41 ASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQP-DCGYYL 99
+S YP RPGE +CLFY + LC +GS C +NHP +E+P R G+ DC
Sbjct: 125 SSAYPVRPGEDNCLFYMKNHLCEWGSECCYNHPPL--------QEIPCRIGKKLDC---- 172
Query: 100 KTGTCKYGSTCKYHHPKDRNG 120
K G CK GS C ++HPK+R+G
Sbjct: 173 KAGACKRGSNCPFNHPKERDG 193
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 53/117 (45%), Gaps = 33/117 (28%)
Query: 217 SNLIYSSRNQGDLGAGAQMH-----------ILSASSQNLPERPDQPDCRYYMNTGTCKY 265
S L +R Q G+ ++M +LS++ P RP + +C +YM C++
Sbjct: 92 SRLWQRARTQDRRGSESRMMFDGRTQWSHAPVLSSA---YPVRPGEDNCLFYMKNHLCEW 148
Query: 266 GADCKFHHPKERIAQSAASNIGPL-GLPSRPGQAI-CSNYSMYGICKFGPTCRFDHP 320
G++C ++HP PL +P R G+ + C G CK G C F+HP
Sbjct: 149 GSECCYNHP-------------PLQEIPCRIGKKLDCK----AGACKRGSNCPFNHP 188
>sp|Q9C7P4|C3H9_ARATH Putative zinc finger CCCH domain-containing protein 9
OS=Arabidopsis thaliana GN=At1g29570 PE=4 SV=1
Length = 321
Score = 62.8 bits (151), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 57/136 (41%), Gaps = 38/136 (27%)
Query: 33 QEGGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQ 92
Q + Q+SPYP RPG+ DC FY + GLC Y S+CRFNHP Q ELP R
Sbjct: 41 QSKERMRQSSPYPVRPGKKDCQFYLKNGLCRYRSSCRFNHPTQRPQ------ELPVR--- 91
Query: 93 PDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSFNILGLPMRQDEKSCPYYMRTGSFLPS 152
CK H DRN A P + R+ E + RT
Sbjct: 92 ----------ICK--------HIMDRNVAEP-----MYQDWRESESERRFDERTQRTFGD 128
Query: 153 S------GLQYAGSLP 162
G++Y+G+ P
Sbjct: 129 ERTQRRYGIEYSGARP 144
Score = 42.7 bits (99), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 23/32 (71%)
Query: 246 PERPDQPDCRYYMNTGTCKYGADCKFHHPKER 277
P RP + DC++Y+ G C+Y + C+F+HP +R
Sbjct: 53 PVRPGKKDCQFYLKNGLCRYRSSCRFNHPTQR 84
Score = 39.3 bits (90), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 7/46 (15%)
Query: 275 KERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHP 320
KER+ QS+ P RPG+ C Y G+C++ +CRF+HP
Sbjct: 43 KERMRQSSP-------YPVRPGKKDCQFYLKNGLCRYRSSCRFNHP 81
>sp|A3CEM4|C3H64_ORYSJ Putative zinc finger CCCH domain-containing protein 64 OS=Oryza
sativa subsp. japonica GN=Os12g0129500 PE=4 SV=2
Length = 527
Score = 52.4 bits (124), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Query: 200 NTYMGNIGPLSPTSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMN 259
N + G + ++ IAG ++ S + AG + +L Q PERP +P CRYYM
Sbjct: 167 NAHDGILDDINCAQIAGKHVGDHSNCANVIKAGV-ISLLGKLVQ-YPERPGEPFCRYYMK 224
Query: 260 TGTCKYGADCKFHHPKERIAQSAASNI 286
G CK+ CK++HPK+R + + I
Sbjct: 225 FGECKHMTFCKYNHPKDRFSCKTTNTI 251
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/32 (62%), Positives = 25/32 (78%)
Query: 87 PERNGQPDCGYYLKTGTCKYGSTCKYHHPKDR 118
PER G+P C YY+K G CK+ + CKY+HPKDR
Sbjct: 211 PERPGEPFCRYYMKFGECKHMTFCKYNHPKDR 242
Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 38 VAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHP 73
+ + YP RPGEP C +Y + G C + + C++NHP
Sbjct: 204 LGKLVQYPERPGEPFCRYYMKFGECKHMTFCKYNHP 239
Score = 34.7 bits (78), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 278 IAQSAASNIGPL-GLPSRPGQAICSNYSMYGICKFGPTCRFDHP 320
I S +G L P RPG+ C Y +G CK C+++HP
Sbjct: 196 IKAGVISLLGKLVQYPERPGEPFCRYYMKFGECKHMTFCKYNHP 239
>sp|Q8BQZ5|CPSF4_MOUSE Cleavage and polyadenylation specificity factor subunit 4 OS=Mus
musculus GN=Cpsf4 PE=2 SV=1
Length = 211
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Query: 254 CRYYMNTGTCKYGADCKFHHPKERIAQSAA---SNIGPLGLPSRPGQAICSNYSMYGICK 310
C++++ G CK G C+F H + S GPL + IC NY + G C
Sbjct: 68 CKHWLR-GLCKKGDQCEFLHEYDMTKMPECYFYSKFGPLCRHRHTRRVICVNY-LVGFCP 125
Query: 311 FGPTCRFDHPYAGYPI 326
GP+C+F HP P+
Sbjct: 126 EGPSCKFMHPRFELPM 141
>sp|Q6S9E0|TTP_SHEEP Tristetraprolin OS=Ovis aries GN=ZFP36 PE=2 SV=1
Length = 325
Score = 42.0 bits (97), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 14/69 (20%)
Query: 254 CRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQ---AICSNYSMYGICK 310
CR + +G C+YGA C+F H +G L PSR + +C + + G C
Sbjct: 107 CRTFSESGRCRYGAKCQFAH-----------GLGELRQPSRHPKYKTELCHKFYLQGRCP 155
Query: 311 FGPTCRFDH 319
+G C F H
Sbjct: 156 YGSRCHFIH 164
Score = 35.0 bits (79), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 12/81 (14%)
Query: 53 CLFYRRTGLCGYGSNCRFNHPA----YAAQGAQYREELPERNGQPDCGYYLKTGTCKYGS 108
C + +G C YG+ C+F H ++ +Y+ EL C + G C YGS
Sbjct: 107 CRTFSESGRCRYGAKCQFAHGLGELRQPSRHPKYKTEL--------CHKFYLQGRCPYGS 158
Query: 109 TCKYHHPKDRNGAGPVSFNIL 129
C + H + A P ++L
Sbjct: 159 RCHFIHNPSEDLAAPGHPHVL 179
>sp|P47979|ZFS1_SCHPO Zinc finger protein zfs1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=zfs1 PE=1 SV=1
Length = 404
Score = 41.6 bits (96), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 8/66 (12%)
Query: 254 CRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGP 313
C+ + +GTC+YG+ C+F H + + + P P + C ++ MYG C +G
Sbjct: 332 CKNWQISGTCRYGSKCQFAHGNQELKE-------PPRHPKYKSER-CRSFMMYGYCPYGL 383
Query: 314 TCRFDH 319
C F H
Sbjct: 384 RCCFLH 389
Score = 35.4 bits (80), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 36/87 (41%), Gaps = 9/87 (10%)
Query: 30 HDNQEGGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPE- 88
H + GVA EP C ++ +G C YGS C+F H G Q +E P
Sbjct: 310 HGSGSSNGVAPNGKRALYKTEP-CKNWQISGTCRYGSKCQFAH------GNQELKEPPRH 362
Query: 89 -RNGQPDCGYYLKTGTCKYGSTCKYHH 114
+ C ++ G C YG C + H
Sbjct: 363 PKYKSERCRSFMMYGYCPYGLRCCFLH 389
>sp|Q54CU9|DUS3L_DICDI tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like OS=Dictyostelium
discoideum GN=dus3l PE=3 SV=1
Length = 671
Score = 41.2 bits (95), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 44/104 (42%), Gaps = 27/104 (25%)
Query: 262 TCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPY 321
C++ CKF H E+ S +IG IC N+ YG CK+G C F +
Sbjct: 113 VCEFNETCKFSHDVEKYLASKPKSIG-----------ICQNFQTYGECKYGLNCYFGECH 161
Query: 322 AGYPINYGLSLPPLSILDS-SLMNHQAISATHSIETSPDASSKI 364
I+D+ +++N + I ++T + S++I
Sbjct: 162 ---------------IVDNKTIVNKELIGKVEPVKTLNEVSNEI 190
>sp|P47974|TISD_HUMAN Zinc finger protein 36, C3H1 type-like 2 OS=Homo sapiens GN=ZFP36L2
PE=1 SV=3
Length = 494
Score = 41.2 bits (95), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 8/66 (12%)
Query: 254 CRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGP 313
CR + +GTCKYG C+F H + L + +C + G C +GP
Sbjct: 159 CRPFEESGTCKYGEKCQFAHGFHELRS--------LTRHPKYKTELCRTFHTIGFCPYGP 210
Query: 314 TCRFDH 319
C F H
Sbjct: 211 RCHFIH 216
Score = 33.5 bits (75), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 12/75 (16%)
Query: 53 CLFYRRTGLCGYGSNCRFNHPAYAAQGA----QYREELPERNGQPDCGYYLKTGTCKYGS 108
C + +G C YG C+F H + + +Y+ EL C + G C YG
Sbjct: 159 CRPFEESGTCKYGEKCQFAHGFHELRSLTRHPKYKTEL--------CRTFHTIGFCPYGP 210
Query: 109 TCKYHHPKDRNGAGP 123
C + H D P
Sbjct: 211 RCHFIHNADERRPAP 225
>sp|Q7ZXW9|TISDA_XENLA Zinc finger protein 36, C3H1 type-like 2-A OS=Xenopus laevis
GN=zfp36l2-A PE=2 SV=1
Length = 363
Score = 41.2 bits (95), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 8/66 (12%)
Query: 254 CRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGP 313
CR + +G CKYG C+F H + L + +C + G C +GP
Sbjct: 137 CRPFEESGACKYGEKCQFAH--------GFHELRSLTRHPKYKTELCRTFHTIGFCPYGP 188
Query: 314 TCRFDH 319
C F H
Sbjct: 189 RCHFIH 194
Score = 34.3 bits (77), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 29/75 (38%), Gaps = 12/75 (16%)
Query: 53 CLFYRRTGLCGYGSNCRFNHPAYAAQGA----QYREELPERNGQPDCGYYLKTGTCKYGS 108
C + +G C YG C+F H + + +Y+ EL C + G C YG
Sbjct: 137 CRPFEESGACKYGEKCQFAHGFHELRSLTRHPKYKTEL--------CRTFHTIGFCPYGP 188
Query: 109 TCKYHHPKDRNGAGP 123
C + H + P
Sbjct: 189 RCHFIHNAEERRQAP 203
>sp|P23949|TISD_MOUSE Zinc finger protein 36, C3H1 type-like 2 OS=Mus musculus GN=Zfp36l2
PE=2 SV=1
Length = 367
Score = 40.8 bits (94), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 8/66 (12%)
Query: 254 CRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGP 313
CR + +GTCKYG C+F H + L + +C + G C +GP
Sbjct: 132 CRPFEESGTCKYGEKCQFAHGFHELRS--------LTRHPKYKTELCRTFHTIGFCPYGP 183
Query: 314 TCRFDH 319
C F H
Sbjct: 184 RCHFIH 189
Score = 32.3 bits (72), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 12/69 (17%)
Query: 53 CLFYRRTGLCGYGSNCRFNHPAYAAQGA----QYREELPERNGQPDCGYYLKTGTCKYGS 108
C + +G C YG C+F H + + +Y+ EL C + G C YG
Sbjct: 132 CRPFEESGTCKYGEKCQFAHGFHELRSLTRHPKYKTEL--------CRTFHTIGFCPYGP 183
Query: 109 TCKYHHPKD 117
C + H D
Sbjct: 184 RCHFIHNAD 192
>sp|O74463|YQC1_SCHPO Uncharacterized protein C1739.01 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPCC1739.01 PE=1 SV=2
Length = 547
Score = 40.8 bits (94), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 29/70 (41%), Gaps = 20/70 (28%)
Query: 254 CRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGP 313
C+++ N GTC G +C F H E RP IC Y + G CKFGP
Sbjct: 47 CKFFRN-GTCTAGENCPFSHSLET---------------ERP---IC-KYFLKGNCKFGP 86
Query: 314 TCRFDHPYAG 323
C H G
Sbjct: 87 KCALSHALPG 96
Score = 39.3 bits (90), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 27/62 (43%), Gaps = 16/62 (25%)
Query: 53 CLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKY 112
C F+R G C G NC F+H ER P C Y+LK G CK+G C
Sbjct: 47 CKFFRN-GTCTAGENCPFSHSLET-----------ER---PICKYFLK-GNCKFGPKCAL 90
Query: 113 HH 114
H
Sbjct: 91 SH 92
>sp|Q805B4|TISDB_XENLA Zinc finger protein 36, C3H1 type-like 2-B OS=Xenopus laevis
GN=zfp36l2-B PE=2 SV=1
Length = 364
Score = 40.4 bits (93), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 26/66 (39%), Gaps = 8/66 (12%)
Query: 254 CRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGP 313
CR + G CKYG C+F H + L + +C + G C +GP
Sbjct: 139 CRPFEENGACKYGEKCQFAH--------GFHELRSLTRHPKYKTELCRTFHTIGFCPYGP 190
Query: 314 TCRFDH 319
C F H
Sbjct: 191 RCHFIH 196
Score = 33.5 bits (75), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 28/75 (37%), Gaps = 12/75 (16%)
Query: 53 CLFYRRTGLCGYGSNCRFNHPAYAAQGA----QYREELPERNGQPDCGYYLKTGTCKYGS 108
C + G C YG C+F H + + +Y+ EL C + G C YG
Sbjct: 139 CRPFEENGACKYGEKCQFAHGFHELRSLTRHPKYKTEL--------CRTFHTIGFCPYGP 190
Query: 109 TCKYHHPKDRNGAGP 123
C + H + P
Sbjct: 191 RCHFIHNAEERRQAP 205
>sp|P22893|TTP_MOUSE Tristetraprolin OS=Mus musculus GN=Zfp36 PE=1 SV=1
Length = 319
Score = 40.0 bits (92), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 8/66 (12%)
Query: 254 CRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGP 313
CR Y +G C+YGA C+F H + Q +N P + +C + + G C +G
Sbjct: 101 CRTYSESGRCRYGAKCQFAHGLGELRQ---ANRHP-----KYKTELCHKFYLQGRCPYGS 152
Query: 314 TCRFDH 319
C F H
Sbjct: 153 RCHFIH 158
Score = 36.2 bits (82), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 12/81 (14%)
Query: 53 CLFYRRTGLCGYGSNCRFNHPAYAAQGA----QYREELPERNGQPDCGYYLKTGTCKYGS 108
C Y +G C YG+ C+F H + A +Y+ EL C + G C YGS
Sbjct: 101 CRTYSESGRCRYGAKCQFAHGLGELRQANRHPKYKTEL--------CHKFYLQGRCPYGS 152
Query: 109 TCKYHHPKDRNGAGPVSFNIL 129
C + H + A P ++L
Sbjct: 153 RCHFIHNPTEDLALPGQPHVL 173
>sp|P47980|TIS1_DROME Protein TIS11 OS=Drosophila melanogaster GN=Tis11 PE=2 SV=2
Length = 436
Score = 40.0 bits (92), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 43/114 (37%), Gaps = 21/114 (18%)
Query: 215 AGSNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPD---------CRYYMNTGTCKY 265
A ++L+ + N G++ +H +Q+ P P QP CR + G CKY
Sbjct: 97 AVASLVTITENLGNM----NLHRKLERTQSEPLPPQQPMNTSRYKTELCRPFEEAGECKY 152
Query: 266 GADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDH 319
G C+F H + + C + G C +GP C F H
Sbjct: 153 GEKCQFAHGSHELRNVHRH--------PKYKTEYCRTFHSVGFCPYGPRCHFVH 198
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 42/117 (35%), Gaps = 22/117 (18%)
Query: 13 ANQSADNIEEAIWRLKIHDNQEGGGVAQASPYP-------ARPGEPDCLFYRRTGLCGYG 65
A S I E + + +H E Q+ P P +R C + G C YG
Sbjct: 97 AVASLVTITENLGNMNLHRKLE---RTQSEPLPPQQPMNTSRYKTELCRPFEEAGECKYG 153
Query: 66 SNCRFNHPAYAAQGA----QYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDR 118
C+F H ++ + +Y+ E C + G C YG C + H D
Sbjct: 154 EKCQFAHGSHELRNVHRHPKYKTEY--------CRTFHSVGFCPYGPRCHFVHNADE 202
>sp|P47973|TTP_RAT Tristetraprolin OS=Rattus norvegicus GN=Zfp36 PE=2 SV=1
Length = 320
Score = 40.0 bits (92), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 8/66 (12%)
Query: 254 CRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGP 313
CR Y +G C+YGA C+F H + Q +N P + +C + + G C +G
Sbjct: 102 CRTYSESGRCRYGAKCQFAHGPGELRQ---ANRHP-----KYKTELCHKFYLQGRCPYGS 153
Query: 314 TCRFDH 319
C F H
Sbjct: 154 RCHFIH 159
Score = 36.2 bits (82), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 12/81 (14%)
Query: 53 CLFYRRTGLCGYGSNCRFNH-PAYAAQG---AQYREELPERNGQPDCGYYLKTGTCKYGS 108
C Y +G C YG+ C+F H P Q +Y+ EL C + G C YGS
Sbjct: 102 CRTYSESGRCRYGAKCQFAHGPGELRQANRHPKYKTEL--------CHKFYLQGRCPYGS 153
Query: 109 TCKYHHPKDRNGAGPVSFNIL 129
C + H + A P ++L
Sbjct: 154 RCHFIHNPTEDLALPGQPHVL 174
>sp|P41000|CPS3_SCHPO Protein cps3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=cps3 PE=1 SV=3
Length = 583
Score = 40.0 bits (92), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 14/62 (22%)
Query: 53 CLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKY 112
C F+R+ G C G NC F+H +L + C Y+ K G CK+GS C
Sbjct: 41 CKFFRQ-GTCTSGKNCIFSH------------DLELATEKTICKYFQK-GNCKFGSKCAL 86
Query: 113 HH 114
H
Sbjct: 87 EH 88
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 26/66 (39%), Gaps = 18/66 (27%)
Query: 254 CRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGP 313
C+++ GTC G +C F H E + + IC Y G CKFG
Sbjct: 41 CKFFRQ-GTCTSGKNCIFSHDLELATE----------------KTIC-KYFQKGNCKFGS 82
Query: 314 TCRFDH 319
C +H
Sbjct: 83 KCALEH 88
>sp|P17431|TISB_RAT Zinc finger protein 36, C3H1 type-like 1 OS=Rattus norvegicus
GN=Zfp36l1 PE=1 SV=1
Length = 338
Score = 39.7 bits (91), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 26/66 (39%), Gaps = 8/66 (12%)
Query: 254 CRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGP 313
CR + G CKYG C+F H + L + +C + G C +GP
Sbjct: 120 CRPFEENGACKYGDKCQFAH--------GIHELRSLTRHPKYKTELCRTFHTIGFCPYGP 171
Query: 314 TCRFDH 319
C F H
Sbjct: 172 RCHFIH 177
Score = 36.2 bits (82), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 36/100 (36%), Gaps = 16/100 (16%)
Query: 19 NIEEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQ 78
+ E RL Q G G +S Y P + G C YG C+F H + +
Sbjct: 90 SFSEGGERLLPTQKQPGSGQVNSSRYKTELCRP----FEENGACKYGDKCQFAHGIHELR 145
Query: 79 GA----QYREELPERNGQPDCGYYLKTGTCKYGSTCKYHH 114
+Y+ EL C + G C YG C + H
Sbjct: 146 SLTRHPKYKTEL--------CRTFHTIGFCPYGPRCHFIH 177
>sp|P23950|TISB_MOUSE Zinc finger protein 36, C3H1 type-like 1 OS=Mus musculus GN=Zfp36l1
PE=1 SV=1
Length = 338
Score = 39.7 bits (91), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 26/66 (39%), Gaps = 8/66 (12%)
Query: 254 CRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGP 313
CR + G CKYG C+F H + L + +C + G C +GP
Sbjct: 120 CRPFEENGACKYGDKCQFAH--------GIHELRSLTRHPKYKTELCRTFHTIGFCPYGP 171
Query: 314 TCRFDH 319
C F H
Sbjct: 172 RCHFIH 177
Score = 36.2 bits (82), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 36/100 (36%), Gaps = 16/100 (16%)
Query: 19 NIEEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQ 78
+ E RL Q G G +S Y P + G C YG C+F H + +
Sbjct: 90 SFSEGGERLLPTQKQPGSGQVNSSRYKTELCRP----FEENGACKYGDKCQFAHGIHELR 145
Query: 79 GA----QYREELPERNGQPDCGYYLKTGTCKYGSTCKYHH 114
+Y+ EL C + G C YG C + H
Sbjct: 146 SLTRHPKYKTEL--------CRTFHTIGFCPYGPRCHFIH 177
>sp|Q07352|TISB_HUMAN Zinc finger protein 36, C3H1 type-like 1 OS=Homo sapiens GN=ZFP36L1
PE=1 SV=1
Length = 338
Score = 39.7 bits (91), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 26/66 (39%), Gaps = 8/66 (12%)
Query: 254 CRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGP 313
CR + G CKYG C+F H + L + +C + G C +GP
Sbjct: 120 CRPFEENGACKYGDKCQFAH--------GIHELRSLTRHPKYKTELCRTFHTIGFCPYGP 171
Query: 314 TCRFDH 319
C F H
Sbjct: 172 RCHFIH 177
Score = 38.5 bits (88), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 37/100 (37%), Gaps = 16/100 (16%)
Query: 19 NIEEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQ 78
+ E RL Q GGG +S Y P + G C YG C+F H + +
Sbjct: 90 SFSEGGERLLPTQKQPGGGQVNSSRYKTELCRP----FEENGACKYGDKCQFAHGIHELR 145
Query: 79 GA----QYREELPERNGQPDCGYYLKTGTCKYGSTCKYHH 114
+Y+ EL C + G C YG C + H
Sbjct: 146 SLTRHPKYKTEL--------CRTFHTIGFCPYGPRCHFIH 177
>sp|Q7ZWS1|DUS3L_XENLA tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like OS=Xenopus laevis
GN=dus3l PE=2 SV=1
Length = 640
Score = 39.7 bits (91), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
Query: 62 CGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKY 112
C +G C+F+H A+Y + PE + +P+C Y G C YG TC++
Sbjct: 140 CFFGDKCKFSHDV-----AKYVSQKPE-DIRPNCHLYETFGKCIYGVTCRF 184
Score = 35.4 bits (80), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 10/61 (16%)
Query: 263 CKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYA 322
C +G CKF H + +I RP C Y +G C +G TCRF +
Sbjct: 140 CFFGDKCKFSHDVAKYVSQKPEDI-------RPN---CHLYETFGKCIYGVTCRFAKSHL 189
Query: 323 G 323
G
Sbjct: 190 G 190
>sp|Q28BT8|DUS3L_XENTR tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like OS=Xenopus
tropicalis GN=dus3l PE=2 SV=2
Length = 639
Score = 39.7 bits (91), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Query: 62 CGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKY 112
C +G C+F H A+Y E PE + +P+C Y G C YG TC++
Sbjct: 139 CFFGDKCKFLHDV-----AKYVSEKPE-DIRPNCYLYETFGKCIYGVTCRF 183
Score = 35.0 bits (79), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 10/61 (16%)
Query: 263 CKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYA 322
C +G CKF H + +I RP C Y +G C +G TCRF +
Sbjct: 139 CFFGDKCKFLHDVAKYVSEKPEDI-------RPN---CYLYETFGKCIYGVTCRFAKSHL 188
Query: 323 G 323
G
Sbjct: 189 G 189
>sp|P0CS64|YTH1_CRYNJ mRNA 3'-end-processing protein YTH1 OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=YTH1 PE=3 SV=1
Length = 332
Score = 39.3 bits (90), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 6/79 (7%)
Query: 252 PDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGL-PSRPGQAI----CSNYSMY 306
P C +++ G C+ G +C + HP++R + N G L P+ P + I C Y+
Sbjct: 125 PVCIWFVKQGKCELGGECLYFHPRDRRVECPDYNRGFCVLGPNCPRKHIRRRLCDAYAA- 183
Query: 307 GICKFGPTCRFDHPYAGYP 325
G C G C+ HP P
Sbjct: 184 GFCPDGKDCKLAHPSPNRP 202
Score = 38.9 bits (89), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 32/81 (39%), Gaps = 17/81 (20%)
Query: 53 CLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKY 112
C Y R LC G NC + H P C +++K G C+ G C Y
Sbjct: 99 CKHYLRN-LCKMGDNCEYTHDF-------------NLRTMPVCIWFVKQGKCELGGECLY 144
Query: 113 HHPKDRNGAGP---VSFNILG 130
HP+DR P F +LG
Sbjct: 145 FHPRDRRVECPDYNRGFCVLG 165
>sp|P0CS65|YTH1_CRYNB mRNA 3'-end-processing protein YTH1 OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=YTH1 PE=3 SV=1
Length = 332
Score = 39.3 bits (90), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 6/79 (7%)
Query: 252 PDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGL-PSRPGQAI----CSNYSMY 306
P C +++ G C+ G +C + HP++R + N G L P+ P + I C Y+
Sbjct: 125 PVCIWFVKQGKCELGGECLYFHPRDRRVECPDYNRGFCVLGPNCPRKHIRRRLCDAYAA- 183
Query: 307 GICKFGPTCRFDHPYAGYP 325
G C G C+ HP P
Sbjct: 184 GFCPDGKDCKLAHPSPNRP 202
Score = 38.9 bits (89), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 32/81 (39%), Gaps = 17/81 (20%)
Query: 53 CLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKY 112
C Y R LC G NC + H P C +++K G C+ G C Y
Sbjct: 99 CKHYLRN-LCKMGDNCEYTHDF-------------NLRTMPVCIWFVKQGKCELGGECLY 144
Query: 113 HHPKDRNGAGP---VSFNILG 130
HP+DR P F +LG
Sbjct: 145 FHPRDRRVECPDYNRGFCVLG 165
>sp|Q4SRI6|MKRN1_TETNG Probable E3 ubiquitin-protein ligase makorin-1 OS=Tetraodon
nigroviridis GN=mkrn1 PE=3 SV=1
Length = 372
Score = 39.3 bits (90), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 17/66 (25%)
Query: 254 CRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGP 313
CRY+M+ G CK G +C++ H +N S+P IC + G C FG
Sbjct: 24 CRYFMH-GLCKEGDNCRYSHD--------LTN-------SKPAAMICKFFQK-GNCVFGE 66
Query: 314 TCRFDH 319
CRFDH
Sbjct: 67 RCRFDH 72
>sp|Q9TT91|MKRN1_MACEU E3 ubiquitin-protein ligase makorin-1 OS=Macropus eugenii GN=MKRN1
PE=2 SV=1
Length = 478
Score = 39.3 bits (90), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 13/61 (21%)
Query: 56 YRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHP 115
Y G+C G+NCR++H +Q A C YY + G C YG C+Y H
Sbjct: 59 YFMHGVCKKGNNCRYSHDLSTSQSAMV------------CRYYQR-GCCAYGDRCRYEHT 105
Query: 116 K 116
K
Sbjct: 106 K 106
Score = 36.2 bits (82), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 18/69 (26%)
Query: 251 QPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICK 310
Q CRY+M+ G CK G +C++ H L + +C Y G C
Sbjct: 54 QVTCRYFMH-GVCKKGNNCRYSH----------------DLSTSQSAMVCRYYQR-GCCA 95
Query: 311 FGPTCRFDH 319
+G CR++H
Sbjct: 96 YGDRCRYEH 104
>sp|Q6DJP7|CPSF4_XENLA Cleavage and polyadenylation specificity factor subunit 4
OS=Xenopus laevis GN=cpsf4 PE=2 SV=1
Length = 269
Score = 38.9 bits (89), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 38/91 (41%), Gaps = 10/91 (10%)
Query: 252 PDCRYYMNTGTCKYGADCKFHH--PKERIAQS-----AASNIGPLGLPSRPGQAICSNYS 304
P+C +Y G C +C F H P+ +I GPL + IC NY
Sbjct: 94 PECYFYSKFGECS-NKECPFLHIDPESKIKDCPWYDRGFCKHGPLCRHRHTRRVICVNY- 151
Query: 305 MYGICKFGPTCRFDHPYAGYPINYGLSLPPL 335
+ G C GP C+F HP P+ PPL
Sbjct: 152 LVGFCIEGPNCKFMHPRFELPMGTA-EQPPL 181
>sp|P53781|TTP_BOVIN Tristetraprolin OS=Bos taurus GN=ZFP36 PE=2 SV=1
Length = 324
Score = 38.9 bits (89), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 14/69 (20%)
Query: 254 CRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQ---AICSNYSMYGICK 310
CR + +G C+YGA C+F H +G L SR + +C + + G C
Sbjct: 107 CRTFSESGRCRYGAKCQFAH-----------GLGELRQASRHPKYKTELCHKFYLQGRCP 155
Query: 311 FGPTCRFDH 319
+G C F H
Sbjct: 156 YGSRCHFIH 164
Score = 37.0 bits (84), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 12/81 (14%)
Query: 53 CLFYRRTGLCGYGSNCRFNHPA----YAAQGAQYREELPERNGQPDCGYYLKTGTCKYGS 108
C + +G C YG+ C+F H A++ +Y+ EL C + G C YGS
Sbjct: 107 CRTFSESGRCRYGAKCQFAHGLGELRQASRHPKYKTEL--------CHKFYLQGRCPYGS 158
Query: 109 TCKYHHPKDRNGAGPVSFNIL 129
C + H + A P ++L
Sbjct: 159 RCHFIHNPSEDLAAPGHPHVL 179
>sp|A4IIN5|TISD_XENTR Zinc finger protein 36, C3H1 type-like 2 OS=Xenopus tropicalis
GN=zfp36l2 PE=2 SV=1
Length = 333
Score = 38.9 bits (89), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 8/66 (12%)
Query: 254 CRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGP 313
CR + +G CKYG C+F H + L + +C + G C +GP
Sbjct: 107 CRPFEESGACKYGEKCQFAH--------GFHELRSLTRHPKYKTELCRTFHTIGFCPYGP 158
Query: 314 TCRFDH 319
C H
Sbjct: 159 RCHLIH 164
Score = 33.1 bits (74), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 45/137 (32%), Gaps = 23/137 (16%)
Query: 2 PDNRQVKSNAVANQSADNIEEAIWRLKIHDNQEGGGV-----------AQASPYPARPGE 50
P+N Q+K A + + N E +N E A A R
Sbjct: 45 PNNNQLKEPAAGSTALLNRENKFRDRSFSENGERSQHLLHLQQQQQQKAGAQVNSTRYKT 104
Query: 51 PDCLFYRRTGLCGYGSNCRFNHPAYAAQGA----QYREELPERNGQPDCGYYLKTGTCKY 106
C + +G C YG C+F H + + +Y+ EL C + G C Y
Sbjct: 105 ELCRPFEESGACKYGEKCQFAHGFHELRSLTRHPKYKTEL--------CRTFHTIGFCPY 156
Query: 107 GSTCKYHHPKDRNGAGP 123
G C H + P
Sbjct: 157 GPRCHLIHNAEERRQAP 173
>sp|Q66KE3|CPSF4_XENTR Cleavage and polyadenylation specificity factor subunit 4
OS=Xenopus tropicalis GN=cpsf4 PE=2 SV=1
Length = 269
Score = 38.5 bits (88), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 35/82 (42%), Gaps = 9/82 (10%)
Query: 252 PDCRYYMNTGTCKYGADCKFHH--PKERIAQS-----AASNIGPLGLPSRPGQAICSNYS 304
P+C +Y G C +C F H P+ +I GPL + IC NY
Sbjct: 94 PECYFYSKFGECS-NKECPFLHIDPESKIKDCPWYDRGFCKHGPLCRHRHTRRVICVNY- 151
Query: 305 MYGICKFGPTCRFDHPYAGYPI 326
+ G C GP C+F HP P+
Sbjct: 152 LVGFCIEGPNCKFMHPRFELPM 173
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.132 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 174,877,005
Number of Sequences: 539616
Number of extensions: 7827971
Number of successful extensions: 14730
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 141
Number of HSP's that attempted gapping in prelim test: 13308
Number of HSP's gapped (non-prelim): 952
length of query: 416
length of database: 191,569,459
effective HSP length: 120
effective length of query: 296
effective length of database: 126,815,539
effective search space: 37537399544
effective search space used: 37537399544
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 62 (28.5 bits)