Query 014918
Match_columns 416
No_of_seqs 321 out of 1340
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 01:20:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014918.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014918hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1677 CCCH-type Zn-finger pr 99.8 2.3E-19 5.1E-24 179.0 15.4 237 41-317 77-332 (332)
2 KOG1677 CCCH-type Zn-finger pr 99.6 7.8E-16 1.7E-20 153.7 8.0 80 244-325 125-205 (332)
3 KOG1040 Polyadenylation factor 99.4 7.5E-13 1.6E-17 133.0 7.0 144 46-325 41-186 (325)
4 KOG2494 C3H1-type Zn-finger pr 99.0 2.4E-10 5.3E-15 113.8 6.5 60 49-119 36-96 (331)
5 KOG1492 C3H1-type Zn-finger pr 99.0 1.7E-10 3.7E-15 110.3 3.8 132 47-321 203-334 (377)
6 KOG1040 Polyadenylation factor 99.0 5.8E-10 1.3E-14 112.3 5.7 153 47-323 74-227 (325)
7 COG5063 CTH1 CCCH-type Zn-fing 98.7 2.6E-08 5.6E-13 98.6 8.4 64 252-323 231-300 (351)
8 COG5084 YTH1 Cleavage and poly 98.7 1.4E-07 3E-12 93.6 12.1 151 49-327 73-239 (285)
9 PF00642 zf-CCCH: Zinc finger 98.5 3.6E-08 7.8E-13 64.8 0.8 27 249-275 1-27 (27)
10 PF00642 zf-CCCH: Zinc finger 98.3 2.3E-07 5E-12 61.0 1.0 26 48-73 1-26 (27)
11 KOG1492 C3H1-type Zn-finger pr 98.2 7E-07 1.5E-11 85.8 3.6 55 250-323 260-314 (377)
12 COG5063 CTH1 CCCH-type Zn-fing 98.2 1.5E-06 3.3E-11 86.4 4.9 64 51-118 231-300 (351)
13 KOG2494 C3H1-type Zn-finger pr 98.0 2E-06 4.4E-11 86.2 2.5 58 251-323 37-95 (331)
14 smart00356 ZnF_C3H1 zinc finge 97.8 1.5E-05 3.2E-10 51.3 2.3 25 249-274 2-26 (27)
15 KOG2333 Uncharacterized conser 97.7 1.5E-05 3.2E-10 83.8 2.7 62 250-321 75-138 (614)
16 KOG4791 Uncharacterized conser 97.7 3.5E-05 7.5E-10 80.6 4.1 82 51-170 4-86 (667)
17 KOG2333 Uncharacterized conser 97.7 2.2E-05 4.7E-10 82.6 2.6 62 49-116 75-138 (614)
18 smart00356 ZnF_C3H1 zinc finge 97.6 4.9E-05 1.1E-09 48.8 2.3 25 296-321 3-27 (27)
19 KOG4791 Uncharacterized conser 97.6 4.4E-05 9.5E-10 79.9 3.0 52 252-322 33-85 (667)
20 COG5084 YTH1 Cleavage and poly 97.5 0.00025 5.5E-09 70.7 7.4 59 48-118 102-160 (285)
21 KOG1763 Uncharacterized conser 97.5 4E-05 8.7E-10 76.1 1.3 78 41-119 83-193 (343)
22 KOG1763 Uncharacterized conser 97.3 7E-05 1.5E-09 74.4 0.4 80 248-331 89-197 (343)
23 KOG1595 CCCH-type Zn-finger pr 97.2 0.00032 6.8E-09 74.6 3.9 52 60-116 207-259 (528)
24 COG5252 Uncharacterized conser 97.2 0.00017 3.6E-09 69.9 1.6 107 5-118 46-177 (299)
25 KOG1595 CCCH-type Zn-finger pr 97.0 0.0012 2.5E-08 70.4 5.9 61 250-325 235-295 (528)
26 COG5252 Uncharacterized conser 96.7 0.00057 1.2E-08 66.3 0.9 79 248-330 82-181 (299)
27 KOG3702 Nuclear polyadenylated 96.1 0.014 3E-07 63.7 7.4 41 67-118 526-566 (681)
28 KOG2185 Predicted RNA-processi 95.7 0.0045 9.7E-08 64.2 1.4 30 247-277 136-165 (486)
29 PF14608 zf-CCCH_2: Zinc finge 95.7 0.0073 1.6E-07 36.7 1.7 19 299-320 1-19 (19)
30 PF14608 zf-CCCH_2: Zinc finge 95.4 0.0094 2E-07 36.2 1.7 19 94-115 1-19 (19)
31 KOG2185 Predicted RNA-processi 95.4 0.007 1.5E-07 62.8 1.7 33 43-76 133-165 (486)
32 COG5152 Uncharacterized conser 94.8 0.01 2.2E-07 56.6 0.8 28 252-279 142-169 (259)
33 COG5152 Uncharacterized conser 94.0 0.018 3.9E-07 54.9 0.5 27 92-118 141-167 (259)
34 KOG3702 Nuclear polyadenylated 91.4 0.47 1E-05 52.3 6.9 23 297-323 625-647 (681)
35 KOG1039 Predicted E3 ubiquitin 91.2 0.075 1.6E-06 54.7 0.7 25 93-118 9-33 (344)
36 KOG2202 U2 snRNP splicing fact 91.2 0.078 1.7E-06 52.3 0.7 29 293-322 148-176 (260)
37 KOG1039 Predicted E3 ubiquitin 89.8 0.11 2.5E-06 53.4 0.5 24 252-276 9-32 (344)
38 KOG1813 Predicted E3 ubiquitin 89.5 0.12 2.5E-06 52.1 0.3 27 252-278 187-213 (313)
39 KOG1813 Predicted E3 ubiquitin 88.5 0.13 2.8E-06 51.7 -0.1 27 298-324 187-213 (313)
40 PF10650 zf-C3H1: Putative zin 65.9 4.4 9.5E-05 26.0 1.6 23 93-116 1-23 (23)
41 KOG2202 U2 snRNP splicing fact 63.0 1.6 3.5E-05 43.2 -1.2 41 92-132 15-55 (260)
42 PF10650 zf-C3H1: Putative zin 62.9 5.1 0.00011 25.7 1.4 21 299-320 2-22 (23)
43 KOG0153 Predicted RNA-binding 62.6 6.2 0.00013 40.9 2.8 33 42-75 153-185 (377)
44 KOG0153 Predicted RNA-binding 59.8 6.5 0.00014 40.7 2.4 28 89-117 158-185 (377)
45 PF10283 zf-CCHH: Zinc-finger 43.0 7.2 0.00016 25.8 -0.2 8 103-110 2-9 (26)
46 KOG2135 Proteins containing th 20.9 34 0.00074 37.0 0.2 36 245-280 206-241 (526)
47 KOG3777 Uncharacterized conser 20.3 55 0.0012 35.2 1.5 24 297-323 171-194 (443)
No 1
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=99.81 E-value=2.3e-19 Score=179.00 Aligned_cols=237 Identities=35% Similarity=0.628 Sum_probs=152.3
Q ss_pred CCCCCCCCCCcccchhhccCCCCCCCCCCCCCcc-hhcccc---cccccCCCCCCCccccccccccccCC-CCCCCCCCC
Q 014918 41 ASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHPA-YAAQGA---QYREELPERNGQPDCGYYLKTGTCKY-GSTCKYHHP 115 (416)
Q Consensus 41 ~~~yP~Rpg~~~CryylrtG~C~~G~~C~F~H~~-~~~~~t---~~~~~~per~~~~~Ck~flktG~Cky-G~~CrF~Hp 115 (416)
...|+++++..+|.+|.+.+.|.++..|+|+|+. +..... ......+++.+++.|++|.++|.|+| |++|+|+|.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~p~~~~~~~~~~~~~~~~~p~~~kt~lc~~~~~~g~c~y~ge~crfah~ 156 (332)
T KOG1677|consen 77 SSPYPERSGEGDCSAYLRTGVCGYGSSCRYNHPDLRLRPRPVRRSRGERKPERYKTPLCRSFRKSGTCKYRGEQCRFAHG 156 (332)
T ss_pred cCcCCCCCCccccccccccCCCCCCCCCCccCcccccccCCccccccccCcccccCCcceeeecCccccccCchhhhcCC
Confidence 3469999998999999999999999999999996 433222 35567899999999999999999999 999999999
Q ss_pred CCCCCCCCcccccCCCCCCCCCCCcccccccccccCCCCCCCCCCCCccccCCCCCcCc-ccC-------CCCCCCCccc
Q 014918 116 KDRNGAGPVSFNILGLPMRQDEKSCPYYMRTGSFLPSSGLQYAGSLPTWSLQRAPYLSS-RLQ-------GTQSYMPLIV 187 (416)
Q Consensus 116 ~~~~~~~~v~~n~~glP~R~~e~eC~fY~ktG~~~~~~~~~~~~~~~~~~~pr~~~~~~-~~q-------~p~~y~P~~~ 187 (416)
.+..... ..++..+++.+.++++|.+|++||.|. .|..|.|.|+..--.+. .+. .++.|.....
T Consensus 157 ~~e~r~~-~~~~~~~~~~~~kt~lC~~f~~tG~C~-------yG~rC~F~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (332)
T KOG1677|consen 157 LEELRLP-SSENQVGNPPKYKTKLCPKFQKTGLCK-------YGSRCRFIHGEPEDRASNRHPYPVSRNPQPQSYGLTAS 228 (332)
T ss_pred ccccccc-ccchhhcCCCCCCCcCCCccccCCCCC-------CCCcCeecCCCccccccccCCccccccccccccchhhc
Confidence 9876532 257889999999999999999999996 36667776664321110 000 0122211111
Q ss_pred CC-----CCCccCCCCCCCCCc-cCCCCCCCCCCCCccccccccCCCCCccchhhhhcccccCCCCCCCCcccccccccC
Q 014918 188 SP-----SQGIVPAPGWNTYMG-NIGPLSPTSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTG 261 (416)
Q Consensus 188 ~p-----sqg~vp~~gw~~y~~-~~~p~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~Perpkq~~Cr~y~ktG 261 (416)
.+ ...+--.-.|.. .. .+-|..+.............. ..... .......+.+++++.+++|++ +++|
T Consensus 229 ~~~~~~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~---~~~~~--~~~~~~~~~~~~~p~~~~~~~-~~~~ 301 (332)
T KOG1677|consen 229 RSSLLNQQSKLQQPFAPSG-LSESVLPRSSQQNLLPQGLRSSSS---SHPSG--SQENVNENGFRARPEQPECRS-MKSG 301 (332)
T ss_pred chhhccccccccccccccc-cccccCcCCccccccccccccccc---ccccc--chhccccccCcCCCCCCccch-hccc
Confidence 10 000000000100 00 000100000000000000000 00000 111225778999999999999 9999
Q ss_pred CCCCCCCCCCCCchhhhhccccccCCCCCCCCCCCCccCcccccccccCCCCCCCC
Q 014918 262 TCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRF 317 (416)
Q Consensus 262 ~Ck~G~~CrF~H~~d~~~~~~~~~l~~~g~P~rp~~~~C~~y~~~G~CkfG~~CkF 317 (416)
.+. + +++|++...|..|.++|+|+||..|+|
T Consensus 302 -------------~~~--------l----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (332)
T KOG1677|consen 302 -------------ENR--------L----LPLRPGPGACTLFSRYGSCKFGPLCKF 332 (332)
T ss_pred -------------ccc--------c----cCCCCCcccccccccccccCCCCcCCC
Confidence 111 1 688999999999999999999999987
No 2
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=99.61 E-value=7.8e-16 Score=153.72 Aligned_cols=80 Identities=34% Similarity=0.764 Sum_probs=69.1
Q ss_pred CCCCCCCCcccccccccCCCCC-CCCCCCCCchhhhhccccccCCCCCCCCCCCCccCcccccccccCCCCCCCCCCCCC
Q 014918 244 NLPERPDQPDCRYYMNTGTCKY-GADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYA 322 (416)
Q Consensus 244 ~~Perpkq~~Cr~y~ktG~Ck~-G~~CrF~H~~d~~~~~~~~~l~~~g~P~rp~~~~C~~y~~~G~CkfG~~CkF~Hp~~ 322 (416)
..|++.++++|++|+++|.|+| |++|+|+|..+++.... .++.++++.++++++|.+|+++|.|+||.+|+|.|+..
T Consensus 125 ~~p~~~kt~lc~~~~~~g~c~y~ge~crfah~~~e~r~~~--~~~~~~~~~~~kt~lC~~f~~tG~C~yG~rC~F~H~~~ 202 (332)
T KOG1677|consen 125 RKPERYKTPLCRSFRKSGTCKYRGEQCRFAHGLEELRLPS--SENQVGNPPKYKTKLCPKFQKTGLCKYGSRCRFIHGEP 202 (332)
T ss_pred cCcccccCCcceeeecCccccccCchhhhcCCcccccccc--cchhhcCCCCCCCcCCCccccCCCCCCCCcCeecCCCc
Confidence 4567789999999999999999 99999999998876432 23456789999999999999999999999999999987
Q ss_pred CCC
Q 014918 323 GYP 325 (416)
Q Consensus 323 ~~~ 325 (416)
...
T Consensus 203 ~~~ 205 (332)
T KOG1677|consen 203 EDR 205 (332)
T ss_pred ccc
Confidence 543
No 3
>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]
Probab=99.37 E-value=7.5e-13 Score=133.02 Aligned_cols=144 Identities=29% Similarity=0.711 Sum_probs=112.3
Q ss_pred CCCCCcccchhhcc-CCCCCCCCCCCCCcchhcccccccccCCCCCCCccccccccccccCCCCCCCCCCCCCCCCCCCc
Q 014918 46 ARPGEPDCLFYRRT-GLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPV 124 (416)
Q Consensus 46 ~Rpg~~~Cryylrt-G~C~~G~~C~F~H~~~~~~~t~~~~~~per~~~~~Ck~flktG~CkyG~~CrF~Hp~~~~~~~~v 124 (416)
++.+...|.++.+. -.|..|..|.+.|.... ...++.+|+||++ |.|+.|+.|.|.|..+..
T Consensus 41 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~vcK~~l~-glC~kgD~C~Flhe~~~~----- 103 (325)
T KOG1040|consen 41 DESGRATCEFNESREKPCERGPICPKSHNDVS-----------DSRGKVVCKHWLR-GLCKKGDQCEFLHEYDLT----- 103 (325)
T ss_pred cccccchhcccccCCCCccCCCCCccccCCcc-----------ccCCceeehhhhh-hhhhccCcCcchhhhhhc-----
Confidence 44556789988632 46999999999998642 0124578999999 999999999999998533
Q ss_pred ccccCCCCCCCCCCCcccccccccccCCCCCCCCCCCCccccCCCCCcCcccCCCCCCCCcccCCCCCccCCCCCCCCCc
Q 014918 125 SFNILGLPMRQDEKSCPYYMRTGSFLPSSGLQYAGSLPTWSLQRAPYLSSRLQGTQSYMPLIVSPSQGIVPAPGWNTYMG 204 (416)
Q Consensus 125 ~~n~~glP~R~~e~eC~fY~ktG~~~~~~~~~~~~~~~~~~~pr~~~~~~~~q~p~~y~P~~~~psqg~vp~~gw~~y~~ 204 (416)
.+++|.||..+|.|.+.... +|++.. |
T Consensus 104 -----------k~rec~ff~~~g~c~~~~~c--------------~y~h~d-------------p--------------- 130 (325)
T KOG1040|consen 104 -----------KMRECKFFSLFGECTNGKDC--------------PYLHGD-------------P--------------- 130 (325)
T ss_pred -----------ccccccccccccccccccCC--------------cccCCC-------------h---------------
Confidence 37899999999999753222 232210 0
Q ss_pred cCCCCCCCCCCCCccccccccCCCCCccchhhhhcccccCCCCCCCCcccccccccCCCCCCCCCCCCCchhhhhccccc
Q 014918 205 NIGPLSPTSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAAS 284 (416)
Q Consensus 205 ~~~p~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~Perpkq~~Cr~y~ktG~Ck~G~~CrF~H~~d~~~~~~~~ 284 (416)
| .+..+|.+|.+ |+|+-|+.|++.|..
T Consensus 131 -----------------------------q--------------t~~k~c~~~~~-g~c~~g~~c~~~h~~--------- 157 (325)
T KOG1040|consen 131 -----------------------------Q--------------TAIKKCKWYKE-GFCRGGPSCKKRHER--------- 157 (325)
T ss_pred -----------------------------h--------------hhhhccchhhh-ccCCCcchhhhhhhc---------
Confidence 0 14568999999 999999999999953
Q ss_pred cCCCCCCCCCCCCccCcccccccccCCCCC-CCCCCCCCCCC
Q 014918 285 NIGPLGLPSRPGQAICSNYSMYGICKFGPT-CRFDHPYAGYP 325 (416)
Q Consensus 285 ~l~~~g~P~rp~~~~C~~y~~~G~CkfG~~-CkF~Hp~~~~~ 325 (416)
..+|..|.. |+|.-|.. |.+.|+...++
T Consensus 158 ------------~~~c~~y~~-gfC~~g~q~c~~~hp~~~~~ 186 (325)
T KOG1040|consen 158 ------------KVLCPPYNA-GFCPKGPQRCDMLHPEFQQP 186 (325)
T ss_pred ------------ccCCCchhh-hhccCCCCcccccCCCCCCC
Confidence 369999999 99999998 99999998765
No 4
>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]
Probab=99.05 E-value=2.4e-10 Score=113.82 Aligned_cols=60 Identities=30% Similarity=0.572 Sum_probs=46.9
Q ss_pred CCcccchhhccCCCCCCCC-CCCCCcchhcccccccccCCCCCCCccccccccccccCCCCCCCCCCCCCCC
Q 014918 49 GEPDCLFYRRTGLCGYGSN-CRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRN 119 (416)
Q Consensus 49 g~~~CryylrtG~C~~G~~-C~F~H~~~~~~~t~~~~~~per~~~~~Ck~flktG~CkyG~~CrF~Hp~~~~ 119 (416)
..++||.|+| |.|..|++ |||+|+....+.. .+ .-..|..|++ |.|. .++|||.|+....
T Consensus 36 ~~eVCReF~r-n~C~R~d~~CkfaHP~~~~~V~--~g------~v~aC~Ds~k-grCs-R~nCkylHpp~hl 96 (331)
T KOG2494|consen 36 TLEVCREFLR-NTCSRGDRECKFAHPPKNCQVS--NG------RVIACFDSQK-GRCS-RENCKYLHPPQHL 96 (331)
T ss_pred HHHHHHHHHh-ccccCCCccccccCCCCCCCcc--CC------eEEEEecccc-CccC-cccceecCCChhh
Confidence 3689999998 99999999 9999996533211 11 1246999999 9998 5789999997654
No 5
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]
Probab=99.02 E-value=1.7e-10 Score=110.29 Aligned_cols=132 Identities=30% Similarity=0.752 Sum_probs=103.8
Q ss_pred CCCCcccchhhccCCCCCCCCCCCCCcchhcccccccccCCCCCCCccccccccccccCCCCCCCCCCCCCCCCCCCccc
Q 014918 47 RPGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSF 126 (416)
Q Consensus 47 Rpg~~~CryylrtG~C~~G~~C~F~H~~~~~~~t~~~~~~per~~~~~Ck~flktG~CkyG~~CrF~Hp~~~~~~~~v~~ 126 (416)
.|....||||..+|.|..|..|+|.|...++ .+|..|+. |.|...+.|...|..+..
T Consensus 203 spsavycryynangicgkgaacrfvheptrk---------------ticpkfln-grcnkaedcnlsheldpr------- 259 (377)
T KOG1492|consen 203 SPSAVYCRYYNANGICGKGAACRFVHEPTRK---------------TICPKFLN-GRCNKAEDCNLSHELDPR------- 259 (377)
T ss_pred CCceeEEEEecCCCcccCCceeeeecccccc---------------ccChHHhc-CccCchhcCCcccccCcc-------
Confidence 3567899999999999999999999985542 46999998 999999999999997633
Q ss_pred ccCCCCCCCCCCCcccccccccccCCCCCCCCCCCCccccCCCCCcCcccCCCCCCCCcccCCCCCccCCCCCCCCCccC
Q 014918 127 NILGLPMRQDEKSCPYYMRTGSFLPSSGLQYAGSLPTWSLQRAPYLSSRLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNI 206 (416)
Q Consensus 127 n~~glP~R~~e~eC~fY~ktG~~~~~~~~~~~~~~~~~~~pr~~~~~~~~q~p~~y~P~~~~psqg~vp~~gw~~y~~~~ 206 (416)
+.+.|.||.- |.|.. |...|++ +
T Consensus 260 ---------ripacryfll-gkcnn---------------pncryvh-----------i--------------------- 282 (377)
T KOG1492|consen 260 ---------RIPACRYFLL-GKCNN---------------PNCRYVH-----------I--------------------- 282 (377)
T ss_pred ---------ccchhhhhhh-ccCCC---------------CCceEEE-----------E---------------------
Confidence 2678988863 66642 1112222 0
Q ss_pred CCCCCCCCCCCccccccccCCCCCccchhhhhcccccCCCCCCCCcccccccccCCCCCCCCCCCCCchhhhhccccccC
Q 014918 207 GPLSPTSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNI 286 (416)
Q Consensus 207 ~p~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~Perpkq~~Cr~y~ktG~Ck~G~~CrF~H~~d~~~~~~~~~l 286 (416)
.|.| ..++|--|.+.|+|..|.+|+-.|.
T Consensus 283 -------------------------------------hyse--napicfefakygfcelgtscknqhi------------ 311 (377)
T KOG1492|consen 283 -------------------------------------HYSE--NAPICFEFAKYGFCELGTSCKNQHI------------ 311 (377)
T ss_pred -------------------------------------eecC--CCceeeeehhcceecccccccccee------------
Confidence 1111 5688999999999999999999993
Q ss_pred CCCCCCCCCCCccCcccccccccCCCCCCCCCCCC
Q 014918 287 GPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPY 321 (416)
Q Consensus 287 ~~~g~P~rp~~~~C~~y~~~G~CkfG~~CkF~Hp~ 321 (416)
..|..|..+|.|- .+.|.+.|..
T Consensus 312 -----------lqctdyamfgscn-npqcslyhga 334 (377)
T KOG1492|consen 312 -----------LQCTDYAMFGSCN-NPQCSLYHGA 334 (377)
T ss_pred -----------eeecchhhhcCCC-CCcceeecce
Confidence 4799999999998 6799999974
No 6
>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]
Probab=98.97 E-value=5.8e-10 Score=112.34 Aligned_cols=153 Identities=22% Similarity=0.344 Sum_probs=110.8
Q ss_pred CCCCcccchhhccCCCCCCCCCCCCCcchhcccccccccCCCCCCCccccccccccccCCCCCCCCCCCCCCCCCCCccc
Q 014918 47 RPGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSF 126 (416)
Q Consensus 47 Rpg~~~CryylrtG~C~~G~~C~F~H~~~~~~~t~~~~~~per~~~~~Ck~flktG~CkyG~~CrF~Hp~~~~~~~~v~~ 126 (416)
..++++|+||+| |.|+.|+.|.|.|..+.. +.+.|.||..+|.|..|..|-|.|.....
T Consensus 74 ~~~~~vcK~~l~-glC~kgD~C~Flhe~~~~-------------k~rec~ff~~~g~c~~~~~c~y~h~dpqt------- 132 (325)
T KOG1040|consen 74 SRGKVVCKHWLR-GLCKKGDQCEFLHEYDLT-------------KMRECKFFSLFGECTNGKDCPYLHGDPQT------- 132 (325)
T ss_pred cCCceeehhhhh-hhhhccCcCcchhhhhhc-------------ccccccccccccccccccCCcccCCChhh-------
Confidence 567899999996 999999999999997543 23579999999999999999999998532
Q ss_pred ccCCCCCCCCCCCcccccccccccCCCCCCCCCCCCccccCCCCCcCcccCCCCCCCCcccCCCCCccCCCCCCCCCccC
Q 014918 127 NILGLPMRQDEKSCPYYMRTGSFLPSSGLQYAGSLPTWSLQRAPYLSSRLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNI 206 (416)
Q Consensus 127 n~~glP~R~~e~eC~fY~ktG~~~~~~~~~~~~~~~~~~~pr~~~~~~~~q~p~~y~P~~~~psqg~vp~~gw~~y~~~~ 206 (416)
..++|.+|.+ |.|-. +..++
T Consensus 133 ---------~~k~c~~~~~-g~c~~-------g~~c~------------------------------------------- 152 (325)
T KOG1040|consen 133 ---------AIKKCKWYKE-GFCRG-------GPSCK------------------------------------------- 152 (325)
T ss_pred ---------hhhccchhhh-ccCCC-------cchhh-------------------------------------------
Confidence 2578988865 55521 00110
Q ss_pred CCCCCCCCCCCccccccccCCCCCccchhhhhcccccCCCCCCCCcccccccccCCCCCCCC-CCCCCchhhhhcccccc
Q 014918 207 GPLSPTSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGAD-CKFHHPKERIAQSAASN 285 (416)
Q Consensus 207 ~p~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~Perpkq~~Cr~y~ktG~Ck~G~~-CrF~H~~d~~~~~~~~~ 285 (416)
+-+. ..++|..|+. |+|.-|.+ |.+.|+.........
T Consensus 153 --------------------------------------~~h~-~~~~c~~y~~-gfC~~g~q~c~~~hp~~~~~~~~~-- 190 (325)
T KOG1040|consen 153 --------------------------------------KRHE-RKVLCPPYNA-GFCPKGPQRCDMLHPEFQQPPFHQ-- 190 (325)
T ss_pred --------------------------------------hhhh-cccCCCchhh-hhccCCCCcccccCCCCCCChhhc--
Confidence 0001 2278999998 99999998 999997654433211
Q ss_pred CCCCCCCCCCCCccCcccccccccCCCCCCCCCCCCCC
Q 014918 286 IGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAG 323 (416)
Q Consensus 286 l~~~g~P~rp~~~~C~~y~~~G~CkfG~~CkF~Hp~~~ 323 (416)
+.....+.+.+..++..|.. ..+.....|.+.+....
T Consensus 191 ~~~q~~~~~~~~~~~~~~~~-~~~~k~~~~~~~~~~~~ 227 (325)
T KOG1040|consen 191 GSVQHPPQRQSQQPGKISGE-EKIHKLLQDKQLPQQHE 227 (325)
T ss_pred cccCCCCCCCCcCccccccc-cccchhhhhhhhhHHHH
Confidence 12223456777788888888 88888888888877543
No 7
>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]
Probab=98.74 E-value=2.6e-08 Score=98.64 Aligned_cols=64 Identities=27% Similarity=0.621 Sum_probs=53.6
Q ss_pred cccccccccCCCCC---CCCCCCC---CchhhhhccccccCCCCCCCCCCCCccCcccccccccCCCCCCCCCCCCCC
Q 014918 252 PDCRYYMNTGTCKY---GADCKFH---HPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAG 323 (416)
Q Consensus 252 ~~Cr~y~ktG~Ck~---G~~CrF~---H~~d~~~~~~~~~l~~~g~P~rp~~~~C~~y~~~G~CkfG~~CkF~Hp~~~ 323 (416)
.+|.-|...|.|++ |+.|.|+ |....+... +.-.-+++++|..|.+-|+|+||.+|.|.|.-..
T Consensus 231 ~lc~~ft~kg~~p~~~sG~~~q~a~~~HGlN~l~~k--------~k~~~frTePcinwe~sGyc~yg~Rc~F~hgd~~ 300 (351)
T COG5063 231 ELCESFTRKGTCPYWISGVKCQFACRGHGLNELKSK--------KKKQNFRTEPCINWEKSGYCPYGLRCCFKHGDDS 300 (351)
T ss_pred HHhhccCcCCCCcccccccccccccccccccccccc--------ccccccccCCccchhhcccCccccccccccCChh
Confidence 78999999999999 9999999 986554432 2234467899999999999999999999998664
No 8
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
Probab=98.70 E-value=1.4e-07 Score=93.61 Aligned_cols=151 Identities=25% Similarity=0.504 Sum_probs=108.7
Q ss_pred CCcccchhhccCCCCCCCCCCCCCcchhcccccccccCCCCCCCccccccccccccCCCCCCCCCCCCCCCCCCCccccc
Q 014918 49 GEPDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSFNI 128 (416)
Q Consensus 49 g~~~CryylrtG~C~~G~~C~F~H~~~~~~~t~~~~~~per~~~~~Ck~flktG~CkyG~~CrF~Hp~~~~~~~~v~~n~ 128 (416)
.+..|.+|+..+.+.....|.+.|..... ....+|++|++ |.|+.|..|.|.|..+...
T Consensus 73 n~~~~~~~~~~~~~~~~~s~~~~~~~~~~------------~s~V~c~~~~~-g~c~s~~~c~~lh~~d~~~-------- 131 (285)
T COG5084 73 NTVACISRNFNSIRGSRLSTPNNHVNPVL------------SSSVVCKFFLR-GLCKSGFSCEFLHEYDLRS-------- 131 (285)
T ss_pred cccccccccccCCccccccCCccccCccc------------cCCcccchhcc-ccCcCCCccccccCCCccc--------
Confidence 46789999976777777799999975331 12357999999 9999999999999987542
Q ss_pred CCCCCCCCCCCcccccccccccCCCCCCCCCCCCccccCCCCCcCcccCCCCCCCCcccCCCCCccCCCCCCCCCccCCC
Q 014918 129 LGLPMRQDEKSCPYYMRTGSFLPSSGLQYAGSLPTWSLQRAPYLSSRLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGP 208 (416)
Q Consensus 129 ~glP~R~~e~eC~fY~ktG~~~~~~~~~~~~~~~~~~~pr~~~~~~~~q~p~~y~P~~~~psqg~vp~~gw~~y~~~~~p 208 (416)
..+.+|.||...|+|.....++|...+ | .
T Consensus 132 ------s~~~~c~~Fs~~G~cs~g~~c~~~h~d---------------------------p------~------------ 160 (285)
T COG5084 132 ------SQGPPCRSFSLKGSCSSGPSCGYSHID---------------------------P------D------------ 160 (285)
T ss_pred ------ccCCCcccccccceeccCCCCCccccC---------------------------c------c------------
Confidence 236899999988998643222221000 0 0
Q ss_pred CCCCCCCCCccccccccCCCCCccchhhhhcccccCCCCCCCCcccccccc--cCCCCCCCCCCCCCchhhhhccccccC
Q 014918 209 LSPTSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMN--TGTCKYGADCKFHHPKERIAQSAASNI 286 (416)
Q Consensus 209 ~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~Perpkq~~Cr~y~k--tG~Ck~G~~CrF~H~~d~~~~~~~~~l 286 (416)
.....|.+|.+ .|+|.+|..|+|.|....+.
T Consensus 161 ----------------------------------------~~~~~~~~~~~~~~~f~p~g~~c~~~H~~~~~~------- 193 (285)
T COG5084 161 ----------------------------------------SFAGNCDQYSGATYGFCPLGASCKFSHTLKRVS------- 193 (285)
T ss_pred ----------------------------------------cccccccccCcccccccCCCCcccccccccccc-------
Confidence 02245777774 69999999999999654321
Q ss_pred CCCCCCCCCCCccCcccccccccCCCCC--------------CCCCCCCCCCCCC
Q 014918 287 GPLGLPSRPGQAICSNYSMYGICKFGPT--------------CRFDHPYAGYPIN 327 (416)
Q Consensus 287 ~~~g~P~rp~~~~C~~y~~~G~CkfG~~--------------CkF~Hp~~~~~~~ 327 (416)
....+|..|+. ++|+-|.. |++.||.......
T Consensus 194 --------~~~~p~~~y~~-~fsP~g~~~~~~~~~~~~~~~~~~~~~ps~~~~iq 239 (285)
T COG5084 194 --------YGSSPCGNYTP-PFSPPGTPSESVSSWGYGKGTSCSLSHPSLNIDIQ 239 (285)
T ss_pred --------ccccccccCcC-CcCCCCCCccccccccccccccccCCCccccCCcC
Confidence 12338999999 99998988 9999998876543
No 9
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....
Probab=98.48 E-value=3.6e-08 Score=64.78 Aligned_cols=27 Identities=41% Similarity=1.038 Sum_probs=21.8
Q ss_pred CCCcccccccccCCCCCCCCCCCCCch
Q 014918 249 PDQPDCRYYMNTGTCKYGADCKFHHPK 275 (416)
Q Consensus 249 pkq~~Cr~y~ktG~Ck~G~~CrF~H~~ 275 (416)
+++++|++|+++|.|+||++|+|+|+.
T Consensus 1 ~k~~~C~~f~~~g~C~~G~~C~f~H~~ 27 (27)
T PF00642_consen 1 YKTKLCRFFMRTGTCPFGDKCRFAHGE 27 (27)
T ss_dssp TTSSB-HHHHHTS--TTGGGSSSBSSG
T ss_pred CccccChhhccCCccCCCCCcCccCCC
Confidence 478999999999999999999999963
No 10
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....
Probab=98.29 E-value=2.3e-07 Score=60.96 Aligned_cols=26 Identities=42% Similarity=0.942 Sum_probs=21.1
Q ss_pred CCCcccchhhccCCCCCCCCCCCCCc
Q 014918 48 PGEPDCLFYRRTGLCGYGSNCRFNHP 73 (416)
Q Consensus 48 pg~~~CryylrtG~C~~G~~C~F~H~ 73 (416)
+++++|++|+++|.|++|++|+|+|+
T Consensus 1 ~k~~~C~~f~~~g~C~~G~~C~f~H~ 26 (27)
T PF00642_consen 1 YKTKLCRFFMRTGTCPFGDKCRFAHG 26 (27)
T ss_dssp TTSSB-HHHHHTS--TTGGGSSSBSS
T ss_pred CccccChhhccCCccCCCCCcCccCC
Confidence 35789999999999999999999997
No 11
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]
Probab=98.24 E-value=7e-07 Score=85.78 Aligned_cols=55 Identities=29% Similarity=0.863 Sum_probs=45.3
Q ss_pred CCcccccccccCCCCCCCCCCCCCchhhhhccccccCCCCCCCCCCCCccCcccccccccCCCCCCCCCCCCCC
Q 014918 250 DQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAG 323 (416)
Q Consensus 250 kq~~Cr~y~ktG~Ck~G~~CrF~H~~d~~~~~~~~~l~~~g~P~rp~~~~C~~y~~~G~CkfG~~CkF~Hp~~~ 323 (416)
..+.||||+- |.|.. ..|||.|.... ....+|..|.++|||..|..|+-.|-..-
T Consensus 260 ripacryfll-gkcnn-pncryvhihys-----------------enapicfefakygfcelgtscknqhilqc 314 (377)
T KOG1492|consen 260 RIPACRYFLL-GKCNN-PNCRYVHIHYS-----------------ENAPICFEFAKYGFCELGTSCKNQHILQC 314 (377)
T ss_pred ccchhhhhhh-ccCCC-CCceEEEEeec-----------------CCCceeeeehhcceeccccccccceeeee
Confidence 5678999998 99975 67999995321 12569999999999999999999998654
No 12
>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]
Probab=98.19 E-value=1.5e-06 Score=86.35 Aligned_cols=64 Identities=28% Similarity=0.630 Sum_probs=51.5
Q ss_pred cccchhhccCCCCC---CCCCCCC---CcchhcccccccccCCCCCCCccccccccccccCCCCCCCCCCCCCC
Q 014918 51 PDCLFYRRTGLCGY---GSNCRFN---HPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDR 118 (416)
Q Consensus 51 ~~CryylrtG~C~~---G~~C~F~---H~~~~~~~t~~~~~~per~~~~~Ck~flktG~CkyG~~CrF~Hp~~~ 118 (416)
.+|.-|.+.|.|.+ |+.|.|+ |......... .-...++..|+.|.+.|+|.||.+|.|.|..+.
T Consensus 231 ~lc~~ft~kg~~p~~~sG~~~q~a~~~HGlN~l~~k~----k~~~frTePcinwe~sGyc~yg~Rc~F~hgd~~ 300 (351)
T COG5063 231 ELCESFTRKGTCPYWISGVKCQFACRGHGLNELKSKK----KKQNFRTEPCINWEKSGYCPYGLRCCFKHGDDS 300 (351)
T ss_pred HHhhccCcCCCCccccccccccccccccccccccccc----cccccccCCccchhhcccCccccccccccCChh
Confidence 79999999999999 9999999 9855332111 112345678999999999999999999999764
No 13
>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]
Probab=98.05 E-value=2e-06 Score=86.17 Aligned_cols=58 Identities=29% Similarity=0.638 Sum_probs=45.8
Q ss_pred CcccccccccCCCCCCCC-CCCCCchhhhhccccccCCCCCCCCCCCCccCcccccccccCCCCCCCCCCCCCC
Q 014918 251 QPDCRYYMNTGTCKYGAD-CKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAG 323 (416)
Q Consensus 251 q~~Cr~y~ktG~Ck~G~~-CrF~H~~d~~~~~~~~~l~~~g~P~rp~~~~C~~y~~~G~CkfG~~CkF~Hp~~~ 323 (416)
-++||-|++ |.|+.|+. |||.|+........ -+-..|..|++ |.|. -++|||.|+...
T Consensus 37 ~eVCReF~r-n~C~R~d~~CkfaHP~~~~~V~~------------g~v~aC~Ds~k-grCs-R~nCkylHpp~h 95 (331)
T KOG2494|consen 37 LEVCREFLR-NTCSRGDRECKFAHPPKNCQVSN------------GRVIACFDSQK-GRCS-RENCKYLHPPQH 95 (331)
T ss_pred HHHHHHHHh-ccccCCCccccccCCCCCCCccC------------CeEEEEecccc-CccC-cccceecCCChh
Confidence 479999999 99999998 99999865322111 12357999999 9999 568999999643
No 14
>smart00356 ZnF_C3H1 zinc finger.
Probab=97.78 E-value=1.5e-05 Score=51.29 Aligned_cols=25 Identities=40% Similarity=1.089 Sum_probs=21.9
Q ss_pred CCCcccccccccCCCCCCCCCCCCCc
Q 014918 249 PDQPDCRYYMNTGTCKYGADCKFHHP 274 (416)
Q Consensus 249 pkq~~Cr~y~ktG~Ck~G~~CrF~H~ 274 (416)
.++.+|++| ++|.|++|++|+|+|.
T Consensus 2 ~k~~~C~~~-~~g~C~~g~~C~~~H~ 26 (27)
T smart00356 2 YKTELCKFF-KRGYCPYGDRCKFAHP 26 (27)
T ss_pred CCCCcCcCc-cCCCCCCCCCcCCCCc
Confidence 367799999 5599999999999995
No 15
>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]
Probab=97.74 E-value=1.5e-05 Score=83.79 Aligned_cols=62 Identities=27% Similarity=0.687 Sum_probs=52.5
Q ss_pred CCccccccccc--CCCCCCCCCCCCCchhhhhccccccCCCCCCCCCCCCccCcccccccccCCCCCCCCCCCC
Q 014918 250 DQPDCRYYMNT--GTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPY 321 (416)
Q Consensus 250 kq~~Cr~y~kt--G~Ck~G~~CrF~H~~d~~~~~~~~~l~~~g~P~rp~~~~C~~y~~~G~CkfG~~CkF~Hp~ 321 (416)
...+|.-..++ -.|.||++|||.|+.+........+|. ..|++|...|+|+||-.|||.-..
T Consensus 75 ~n~LCPsli~g~~~~C~f~d~Crf~HDi~ayLatK~~Dig----------~~Cp~f~s~G~Cp~G~~CRFl~aH 138 (614)
T KOG2333|consen 75 QNRLCPSLIQGDISKCSFGDNCRFVHDIEAYLATKAPDIG----------PSCPVFESLGFCPYGFKCRFLGAH 138 (614)
T ss_pred hhccChHhhcCCCccCcccccccccccHHHHHhccCcccC----------CccceeeccccCCccceeehhhcc
Confidence 45789999995 489999999999999988776665664 489999999999999999996443
No 16
>KOG4791 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.67 E-value=3.5e-05 Score=80.65 Aligned_cols=82 Identities=22% Similarity=0.493 Sum_probs=58.2
Q ss_pred cccchhhccCCCCCCCCCCCCCcchhcccccccccCCCCCCCccccccccccccCCCCCCCCCCCCCCCCCCCcccccCC
Q 014918 51 PDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSFNILG 130 (416)
Q Consensus 51 ~~CryylrtG~C~~G~~C~F~H~~~~~~~t~~~~~~per~~~~~Ck~flktG~CkyG~~CrF~Hp~~~~~~~~v~~n~~g 130 (416)
.+|.||+ ...|++++.|.|+|...... ...+|.+|+..-.|+. -|+|.|.+-...
T Consensus 4 ~dcyff~-ys~cKk~d~c~~rh~E~al~------------n~t~C~~w~~~~~C~k--~C~YRHSe~~~k---------- 58 (667)
T KOG4791|consen 4 EDCYFFF-YSTCKKGDSCPFRHCEAALG------------NETVCTLWQEGRCCRK--VCRYRHSEIDKK---------- 58 (667)
T ss_pred ccchhhh-hhhhhccCcCcchhhHHHhc------------CcchhhhhhhcCcccc--cccchhhHHhhh----------
Confidence 5799998 59999999999999966532 2357999999556664 999999975331
Q ss_pred CCCCCCCCCccccccccc-ccCCCCCCCCCCCCccccCCCC
Q 014918 131 LPMRQDEKSCPYYMRTGS-FLPSSGLQYAGSLPTWSLQRAP 170 (416)
Q Consensus 131 lP~R~~e~eC~fY~ktG~-~~~~~~~~~~~~~~~~~~pr~~ 170 (416)
..+-.|.|..+ |. |.. .-|.|.|-+||
T Consensus 59 ----r~e~~CYwe~~-p~gC~k--------~~CgfRH~~pP 86 (667)
T KOG4791|consen 59 ----RSEIPCYWENQ-PTGCQK--------LNCGFRHNRPP 86 (667)
T ss_pred ----cCcccceeecC-CCccCC--------CccccccCCCc
Confidence 13567766554 33 542 35677776655
No 17
>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]
Probab=97.67 E-value=2.2e-05 Score=82.60 Aligned_cols=62 Identities=27% Similarity=0.618 Sum_probs=50.0
Q ss_pred CCcccchhhcc--CCCCCCCCCCCCCcchhcccccccccCCCCCCCccccccccccccCCCCCCCCCCCC
Q 014918 49 GEPDCLFYRRT--GLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPK 116 (416)
Q Consensus 49 g~~~Cryylrt--G~C~~G~~C~F~H~~~~~~~t~~~~~~per~~~~~Ck~flktG~CkyG~~CrF~Hp~ 116 (416)
...+|.-..+. -.|.||++|+|.||.+....++ ++..+ +.|.+|...|.|.||-+|||.-..
T Consensus 75 ~n~LCPsli~g~~~~C~f~d~Crf~HDi~ayLatK-----~~Dig-~~Cp~f~s~G~Cp~G~~CRFl~aH 138 (614)
T KOG2333|consen 75 QNRLCPSLIQGDISKCSFGDNCRFVHDIEAYLATK-----APDIG-PSCPVFESLGFCPYGFKCRFLGAH 138 (614)
T ss_pred hhccChHhhcCCCccCcccccccccccHHHHHhcc-----CcccC-CccceeeccccCCccceeehhhcc
Confidence 46899999975 3799999999999998765542 22333 679999999999999999997543
No 18
>smart00356 ZnF_C3H1 zinc finger.
Probab=97.57 E-value=4.9e-05 Score=48.85 Aligned_cols=25 Identities=32% Similarity=1.008 Sum_probs=21.6
Q ss_pred CCccCcccccccccCCCCCCCCCCCC
Q 014918 296 GQAICSNYSMYGICKFGPTCRFDHPY 321 (416)
Q Consensus 296 ~~~~C~~y~~~G~CkfG~~CkF~Hp~ 321 (416)
++.+|++|+ +|.|++|++|+|.|..
T Consensus 3 k~~~C~~~~-~g~C~~g~~C~~~H~~ 27 (27)
T smart00356 3 KTELCKFFK-RGYCPYGDRCKFAHPL 27 (27)
T ss_pred CCCcCcCcc-CCCCCCCCCcCCCCcC
Confidence 467999994 4999999999999973
No 19
>KOG4791 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.56 E-value=4.4e-05 Score=79.91 Aligned_cols=52 Identities=17% Similarity=0.455 Sum_probs=39.2
Q ss_pred cccccccccCCCCCCCCCCCCCchhhhhccccccCCCCCCCCCCCCccCcccccccc-cCCCCCCCCCCCCC
Q 014918 252 PDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGI-CKFGPTCRFDHPYA 322 (416)
Q Consensus 252 ~~Cr~y~ktG~Ck~G~~CrF~H~~d~~~~~~~~~l~~~g~P~rp~~~~C~~y~~~G~-CkfG~~CkF~Hp~~ 322 (416)
.+|++|+..-.|+. .|+|.|..-... .....|-|+.+ |. |. -++|-|.|..+
T Consensus 33 t~C~~w~~~~~C~k--~C~YRHSe~~~k---------------r~e~~CYwe~~-p~gC~-k~~CgfRH~~p 85 (667)
T KOG4791|consen 33 TVCTLWQEGRCCRK--VCRYRHSEIDKK---------------RSEIPCYWENQ-PTGCQ-KLNCGFRHNRP 85 (667)
T ss_pred chhhhhhhcCcccc--cccchhhHHhhh---------------cCcccceeecC-CCccC-CCccccccCCC
Confidence 36999998567776 899999654332 12578999999 66 98 67999999543
No 20
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
Probab=97.50 E-value=0.00025 Score=70.72 Aligned_cols=59 Identities=31% Similarity=0.684 Sum_probs=48.9
Q ss_pred CCCcccchhhccCCCCCCCCCCCCCcchhcccccccccCCCCCCCccccccccccccCCCCCCCCCCCCCC
Q 014918 48 PGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDR 118 (416)
Q Consensus 48 pg~~~CryylrtG~C~~G~~C~F~H~~~~~~~t~~~~~~per~~~~~Ck~flktG~CkyG~~CrF~Hp~~~ 118 (416)
...++|++|++ |.|+.|..|.|.|..+.... -.+.|++|-..|.|..|..|.|.|..+.
T Consensus 102 ~s~V~c~~~~~-g~c~s~~~c~~lh~~d~~~s-----------~~~~c~~Fs~~G~cs~g~~c~~~h~dp~ 160 (285)
T COG5084 102 SSSVVCKFFLR-GLCKSGFSCEFLHEYDLRSS-----------QGPPCRSFSLKGSCSSGPSCGYSHIDPD 160 (285)
T ss_pred cCCcccchhcc-ccCcCCCccccccCCCcccc-----------cCCCcccccccceeccCCCCCccccCcc
Confidence 45789999995 99999999999999875421 1356999966699999999999999743
No 21
>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only]
Probab=97.47 E-value=4e-05 Score=76.09 Aligned_cols=78 Identities=24% Similarity=0.625 Sum_probs=53.0
Q ss_pred CCCCCCCCCCcccchhhccCCCCCCCCCCCCCcchhcccccccccCCCC-----------------------CCCccccc
Q 014918 41 ASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPER-----------------------NGQPDCGY 97 (416)
Q Consensus 41 ~~~yP~Rpg~~~CryylrtG~C~~G~~C~F~H~~~~~~~t~~~~~~per-----------------------~~~~~Ck~ 97 (416)
..+--..|...+|.||. .|.|..|+.|+|+|+........-..-|+.. ....+|+|
T Consensus 83 kv~~gvDPKSvvCafFk-~g~C~KG~kCKFsHdl~~~~k~eK~dly~d~rdemWD~~kl~~vv~~K~~k~k~~tdiVCKf 161 (343)
T KOG1763|consen 83 KVPKGVDPKSVVCAFFK-QGTCTKGDKCKFSHDLAVERKKEKIDLYPDTRDEMWDEEKLEEVVLKKHGKPKPTTDIVCKF 161 (343)
T ss_pred ccccCCCchHHHHHHHh-ccCCCCCCcccccchHHHhhhccchhccccchhhhhhHHHHHHHHHhhccCCCCchhHHHHH
Confidence 34455678899999998 6999999999999996533221100111111 12248999
Q ss_pred ccc------cc---ccCCCC-CCCCCCCCCCC
Q 014918 98 YLK------TG---TCKYGS-TCKYHHPKDRN 119 (416)
Q Consensus 98 flk------tG---~CkyG~-~CrF~Hp~~~~ 119 (416)
|+- +| .|.+|. .|-|.|..+.+
T Consensus 162 FLeAvE~~kYGWfW~CPnGg~~C~YrHaLP~G 193 (343)
T KOG1763|consen 162 FLEAVENGKYGWFWECPNGGDKCIYRHALPEG 193 (343)
T ss_pred HHHHHhcCCccceeECCCCCCeeeeeecCCcc
Confidence 974 23 399985 99999987754
No 22
>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only]
Probab=97.28 E-value=7e-05 Score=74.40 Aligned_cols=80 Identities=26% Similarity=0.603 Sum_probs=54.2
Q ss_pred CCCCcccccccccCCCCCCCCCCCCCchhhhhccccccC-------------------CCCCCCCCCCCccCccccc---
Q 014918 248 RPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNI-------------------GPLGLPSRPGQAICSNYSM--- 305 (416)
Q Consensus 248 rpkq~~Cr~y~ktG~Ck~G~~CrF~H~~d~~~~~~~~~l-------------------~~~g~P~rp~~~~C~~y~~--- 305 (416)
-|+..+|-||.. |.|..|+.|+|+|+....+...-.+| +--|-|..-...+|.||+.
T Consensus 89 DPKSvvCafFk~-g~C~KG~kCKFsHdl~~~~k~eK~dly~d~rdemWD~~kl~~vv~~K~~k~k~~tdiVCKfFLeAvE 167 (343)
T KOG1763|consen 89 DPKSVVCAFFKQ-GTCTKGDKCKFSHDLAVERKKEKIDLYPDTRDEMWDEEKLEEVVLKKHGKPKPTTDIVCKFFLEAVE 167 (343)
T ss_pred CchHHHHHHHhc-cCCCCCCcccccchHHHhhhccchhccccchhhhhhHHHHHHHHHhhccCCCCchhHHHHHHHHHHh
Confidence 478899999999 99999999999998765443221111 0012222223458999974
Q ss_pred ---ccc---cCCCC-CCCCCCCCCCCCCCCCCC
Q 014918 306 ---YGI---CKFGP-TCRFDHPYAGYPINYGLS 331 (416)
Q Consensus 306 ---~G~---CkfG~-~CkF~Hp~~~~~~~~~~s 331 (416)
||+ |++|. .|.|.|-++ ++|-|.
T Consensus 168 ~~kYGWfW~CPnGg~~C~YrHaLP---~GyVLk 197 (343)
T KOG1763|consen 168 NGKYGWFWECPNGGDKCIYRHALP---EGYVLK 197 (343)
T ss_pred cCCccceeECCCCCCeeeeeecCC---cchhhh
Confidence 453 99985 899999755 556543
No 23
>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=97.17 E-value=0.00032 Score=74.61 Aligned_cols=52 Identities=25% Similarity=0.546 Sum_probs=36.7
Q ss_pred CCCCCCCCCCCCCcch-hcccccccccCCCCCCCccccccccccccCCCCCCCCCCCC
Q 014918 60 GLCGYGSNCRFNHPAY-AAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPK 116 (416)
Q Consensus 60 G~C~~G~~C~F~H~~~-~~~~t~~~~~~per~~~~~Ck~flktG~CkyG~~CrF~Hp~ 116 (416)
+.|.-+..|.|.|+-. .+.... ..| .+.-..|.-|-+ |.|+.|+.|.|.|..
T Consensus 207 ~~shDwteCPf~HpgEkARRRDP--Rky--hYs~tpCPefrk-G~C~rGD~CEyaHgv 259 (528)
T KOG1595|consen 207 PRSHDWTECPFAHPGEKARRRDP--RKY--HYSSTPCPEFRK-GSCERGDSCEYAHGV 259 (528)
T ss_pred ccCCCcccCCccCCCcccccCCc--ccc--cccCccCccccc-CCCCCCCccccccce
Confidence 4677888899999733 221100 011 123457999999 999999999999986
No 24
>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]
Probab=97.16 E-value=0.00017 Score=69.93 Aligned_cols=107 Identities=21% Similarity=0.395 Sum_probs=67.1
Q ss_pred hhhhhhhcccCCchhHHHHHHHhcccCCcCCCCccCCCCCCCCCCCcccchhhccCCCCCCCCCCCCCcchhcccc----
Q 014918 5 RQVKSNAVANQSADNIEEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQGA---- 80 (416)
Q Consensus 5 ~~~~~~~~~~~~~~~~e~~~~r~~~~~~~~~~~~~~~~~yP~Rpg~~~CryylrtG~C~~G~~C~F~H~~~~~~~t---- 80 (416)
+|+.++++..+ +|....++-...+ .....+..+--+.|...+|..|+ .+.|..|+.|+|+|+......+
T Consensus 46 kQie~~~~~~~----~e~~~k~~~e~KR--re~ekq~iragvdpK~~vcalF~-~~~c~kg~~ckF~h~~ee~r~~eK~D 118 (299)
T COG5252 46 KQIETLNLKEQ----LEKKEKMRMEEKR--REPEKQVIRAGVDPKTVVCALFL-NKTCAKGDACKFAHGKEEARKTEKPD 118 (299)
T ss_pred HHHHhhcchhH----HHHHHHHHHHHhh--cchhhhhhccccCchhHHHHHhc-cCccccCchhhhhcchHHHhhhcccc
Confidence 67888877444 4444433322211 11223444556778899999998 7999999999999995432211
Q ss_pred -----c-ccc--cCCCCCC---Cccccccccc------c---ccCCC-CCCCCCCCCCC
Q 014918 81 -----Q-YRE--ELPERNG---QPDCGYYLKT------G---TCKYG-STCKYHHPKDR 118 (416)
Q Consensus 81 -----~-~~~--~~per~~---~~~Ck~flkt------G---~CkyG-~~CrF~Hp~~~ 118 (416)
+ ..+ .+.+++. ..+|+||+-. | .|.+| .+|-|.|..+.
T Consensus 119 LYsDvRd~~ed~pl~krP~intd~VCkffieA~e~GkYgw~W~CPng~~~C~y~H~Lp~ 177 (299)
T COG5252 119 LYSDVRDKEEDVPLGKRPWINTDRVCKFFIEAMESGKYGWGWTCPNGNMRCSYIHKLPD 177 (299)
T ss_pred hhhhhhhhhccCCcccCCCCChhHHHHHHHHHHhcCCccceeeCCCCCceeeeeeccCc
Confidence 1 111 2223332 3579998742 2 49998 69999998765
No 25
>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=96.97 E-value=0.0012 Score=70.45 Aligned_cols=61 Identities=23% Similarity=0.525 Sum_probs=50.4
Q ss_pred CCcccccccccCCCCCCCCCCCCCchhhhhccccccCCCCCCCCCCCCccCcccccccccCCCCCCCCCCCCCCCC
Q 014918 250 DQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGYP 325 (416)
Q Consensus 250 kq~~Cr~y~ktG~Ck~G~~CrF~H~~d~~~~~~~~~l~~~g~P~rp~~~~C~~y~~~G~CkfG~~CkF~Hp~~~~~ 325 (416)
.-+.|.-|.+ |.|+.||.|.|+|..-+. -| =|.++++..|+.- |+|+- .-|-|+|....|.
T Consensus 235 s~tpCPefrk-G~C~rGD~CEyaHgvfEc------wL----HPa~YRT~~CkDg---~~C~R-rvCfFAH~~eqLR 295 (528)
T KOG1595|consen 235 SSTPCPEFRK-GSCERGDSCEYAHGVFEC------WL----HPARYRTRKCKDG---GYCPR-RVCFFAHSPEQLR 295 (528)
T ss_pred cCccCccccc-CCCCCCCccccccceehh------hc----CHHHhccccccCC---CCCcc-ceEeeecChHHhc
Confidence 4578999999 999999999999975432 22 2678999999976 88997 8999999988763
No 26
>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]
Probab=96.69 E-value=0.00057 Score=66.29 Aligned_cols=79 Identities=32% Similarity=0.658 Sum_probs=54.1
Q ss_pred CCCCcccccccccCCCCCCCCCCCCCchhhhhccccccC----------CCCC-CCCCCCCccCccccc------cc---
Q 014918 248 RPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNI----------GPLG-LPSRPGQAICSNYSM------YG--- 307 (416)
Q Consensus 248 rpkq~~Cr~y~ktG~Ck~G~~CrF~H~~d~~~~~~~~~l----------~~~g-~P~rp~~~~C~~y~~------~G--- 307 (416)
-+++.+|-.|.. +.|-.|+.|+|+|.++..+...-.+| -|++ .|.--...+|.||.. ||
T Consensus 82 dpK~~vcalF~~-~~c~kg~~ckF~h~~ee~r~~eK~DLYsDvRd~~ed~pl~krP~intd~VCkffieA~e~GkYgw~W 160 (299)
T COG5252 82 DPKTVVCALFLN-KTCAKGDACKFAHGKEEARKTEKPDLYSDVRDKEEDVPLGKRPWINTDRVCKFFIEAMESGKYGWGW 160 (299)
T ss_pred CchhHHHHHhcc-CccccCchhhhhcchHHHhhhcccchhhhhhhhhccCCcccCCCCChhHHHHHHHHHHhcCCcccee
Confidence 478999999998 99999999999999776654322111 1112 122223458999863 34
Q ss_pred ccCCC-CCCCCCCCCCCCCCCCCC
Q 014918 308 ICKFG-PTCRFDHPYAGYPINYGL 330 (416)
Q Consensus 308 ~CkfG-~~CkF~Hp~~~~~~~~~~ 330 (416)
.|++| .+|-|.|-++ ++|-|
T Consensus 161 ~CPng~~~C~y~H~Lp---~GyVL 181 (299)
T COG5252 161 TCPNGNMRCSYIHKLP---DGYVL 181 (299)
T ss_pred eCCCCCceeeeeeccC---cccee
Confidence 39998 6999999765 55543
No 27
>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]
Probab=96.12 E-value=0.014 Score=63.69 Aligned_cols=41 Identities=20% Similarity=0.459 Sum_probs=27.3
Q ss_pred CCCCCCcchhcccccccccCCCCCCCccccccccccccCCCCCCCCCCCCCC
Q 014918 67 NCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDR 118 (416)
Q Consensus 67 ~C~F~H~~~~~~~t~~~~~~per~~~~~Ck~flktG~CkyG~~CrF~Hp~~~ 118 (416)
.|.+.|...... +-...-...|+||.. |. +..|.|.|+...
T Consensus 526 ~s~s~~s~~~~~-------ltk~k~l~~Cky~~~---Ct-~a~Ce~~HPtaa 566 (681)
T KOG3702|consen 526 DSLSRHSEKKNE-------LTKAKILTRCKYGPA---CT-SAECEFAHPTAA 566 (681)
T ss_pred cchhhCcccccc-------cccceeeccccCCCc---CC-chhhhhcCCcch
Confidence 366777754321 111122357999988 88 899999999875
No 28
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=95.69 E-value=0.0045 Score=64.20 Aligned_cols=30 Identities=23% Similarity=0.941 Sum_probs=25.4
Q ss_pred CCCCCcccccccccCCCCCCCCCCCCCchhh
Q 014918 247 ERPDQPDCRYYMNTGTCKYGADCKFHHPKER 277 (416)
Q Consensus 247 erpkq~~Cr~y~ktG~Ck~G~~CrF~H~~d~ 277 (416)
.-....+|.||+. |.|+||.+|||+|..+-
T Consensus 136 Th~sMkpC~ffLe-g~CRF~enCRfSHG~~V 165 (486)
T KOG2185|consen 136 THESMKPCKFFLE-GRCRFGENCRFSHGLDV 165 (486)
T ss_pred cchhhccchHhhc-cccccCcccccccCccc
Confidence 3346678999999 99999999999997653
No 29
>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type
Probab=95.66 E-value=0.0073 Score=36.67 Aligned_cols=19 Identities=37% Similarity=0.819 Sum_probs=17.3
Q ss_pred cCcccccccccCCCCCCCCCCC
Q 014918 299 ICSNYSMYGICKFGPTCRFDHP 320 (416)
Q Consensus 299 ~C~~y~~~G~CkfG~~CkF~Hp 320 (416)
+|+|+.. |++|+.|.|.||
T Consensus 1 ~Ck~~~~---C~~~~~C~f~HP 19 (19)
T PF14608_consen 1 PCKFGPN---CTNGDNCPFSHP 19 (19)
T ss_pred CCcCcCC---CCCCCcCccCCc
Confidence 5898888 999999999997
No 30
>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type
Probab=95.44 E-value=0.0094 Score=36.19 Aligned_cols=19 Identities=32% Similarity=0.990 Sum_probs=16.8
Q ss_pred cccccccccccCCCCCCCCCCC
Q 014918 94 DCGYYLKTGTCKYGSTCKYHHP 115 (416)
Q Consensus 94 ~Ck~flktG~CkyG~~CrF~Hp 115 (416)
.|+||.. |++|+.|.|.|+
T Consensus 1 ~Ck~~~~---C~~~~~C~f~HP 19 (19)
T PF14608_consen 1 PCKFGPN---CTNGDNCPFSHP 19 (19)
T ss_pred CCcCcCC---CCCCCcCccCCc
Confidence 3998876 999999999996
No 31
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=95.42 E-value=0.007 Score=62.82 Aligned_cols=33 Identities=33% Similarity=0.764 Sum_probs=27.7
Q ss_pred CCCCCCCCcccchhhccCCCCCCCCCCCCCcchh
Q 014918 43 PYPARPGEPDCLFYRRTGLCGYGSNCRFNHPAYA 76 (416)
Q Consensus 43 ~yP~Rpg~~~CryylrtG~C~~G~~C~F~H~~~~ 76 (416)
-+|.-..-..|.||+ .|.|+|+++|||+|....
T Consensus 133 l~PTh~sMkpC~ffL-eg~CRF~enCRfSHG~~V 165 (486)
T KOG2185|consen 133 LTPTHESMKPCKFFL-EGRCRFGENCRFSHGLDV 165 (486)
T ss_pred ecCcchhhccchHhh-ccccccCcccccccCccc
Confidence 356666678999999 699999999999999664
No 32
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=94.81 E-value=0.01 Score=56.57 Aligned_cols=28 Identities=39% Similarity=0.899 Sum_probs=25.2
Q ss_pred cccccccccCCCCCCCCCCCCCchhhhh
Q 014918 252 PDCRYYMNTGTCKYGADCKFHHPKERIA 279 (416)
Q Consensus 252 ~~Cr~y~ktG~Ck~G~~CrF~H~~d~~~ 279 (416)
.+|.-|..||+|-||++|+|+|.++...
T Consensus 142 dVCKdyk~TGYCGYGDsCKflH~R~D~K 169 (259)
T COG5152 142 DVCKDYKETGYCGYGDSCKFLHDRSDFK 169 (259)
T ss_pred ccccchhhcccccCCchhhhhhhhhhhh
Confidence 5899999999999999999999887543
No 33
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=93.97 E-value=0.018 Score=54.91 Aligned_cols=27 Identities=37% Similarity=0.874 Sum_probs=24.6
Q ss_pred CccccccccccccCCCCCCCCCCCCCC
Q 014918 92 QPDCGYYLKTGTCKYGSTCKYHHPKDR 118 (416)
Q Consensus 92 ~~~Ck~flktG~CkyG~~CrF~Hp~~~ 118 (416)
..+|+-|..||.|-||+.|+|+|.+..
T Consensus 141 pdVCKdyk~TGYCGYGDsCKflH~R~D 167 (259)
T COG5152 141 PDVCKDYKETGYCGYGDSCKFLHDRSD 167 (259)
T ss_pred cccccchhhcccccCCchhhhhhhhhh
Confidence 357999999999999999999999874
No 34
>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]
Probab=91.40 E-value=0.47 Score=52.26 Aligned_cols=23 Identities=26% Similarity=0.751 Sum_probs=17.1
Q ss_pred CccCcccccccccCCCCCCCCCCCCCC
Q 014918 297 QAICSNYSMYGICKFGPTCRFDHPYAG 323 (416)
Q Consensus 297 ~~~C~~y~~~G~CkfG~~CkF~Hp~~~ 323 (416)
..+|+|+-. |+ -..|+|.||..-
T Consensus 625 ~~~CrY~pn---Cr-nm~C~F~HPk~c 647 (681)
T KOG3702|consen 625 RGLCRYRPN---CR-NMQCKFYHPKTC 647 (681)
T ss_pred cccceeccC---cC-CccccccCCccc
Confidence 457877765 77 568999999763
No 35
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.21 E-value=0.075 Score=54.67 Aligned_cols=25 Identities=40% Similarity=0.984 Sum_probs=23.5
Q ss_pred ccccccccccccCCCCCCCCCCCCCC
Q 014918 93 PDCGYYLKTGTCKYGSTCKYHHPKDR 118 (416)
Q Consensus 93 ~~Ck~flktG~CkyG~~CrF~Hp~~~ 118 (416)
.+|+||++ |.|+||+.|||.|.+..
T Consensus 9 tic~~~~~-g~c~~g~~cr~~h~~~~ 33 (344)
T KOG1039|consen 9 TICKYYQK-GNCKFGDLCRLSHSLPD 33 (344)
T ss_pred hhhhhccc-ccccccceeeeeccCch
Confidence 58999999 99999999999999984
No 36
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=91.18 E-value=0.078 Score=52.29 Aligned_cols=29 Identities=28% Similarity=0.555 Sum_probs=25.9
Q ss_pred CCCCCccCcccccccccCCCCCCCCCCCCC
Q 014918 293 SRPGQAICSNYSMYGICKFGPTCRFDHPYA 322 (416)
Q Consensus 293 ~rp~~~~C~~y~~~G~CkfG~~CkF~Hp~~ 322 (416)
.+++...|..|.. +.|..|..|.|.|...
T Consensus 148 T~~rea~C~~~e~-~~C~rG~~CnFmH~k~ 176 (260)
T KOG2202|consen 148 TDFREAICGQFER-TECSRGGACNFMHVKR 176 (260)
T ss_pred Cchhhhhhccccc-ccCCCCCcCcchhhhh
Confidence 5667789999999 7999999999999984
No 37
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.76 E-value=0.11 Score=53.38 Aligned_cols=24 Identities=38% Similarity=1.039 Sum_probs=22.7
Q ss_pred cccccccccCCCCCCCCCCCCCchh
Q 014918 252 PDCRYYMNTGTCKYGADCKFHHPKE 276 (416)
Q Consensus 252 ~~Cr~y~ktG~Ck~G~~CrF~H~~d 276 (416)
.+|+||.+ |.|+||+.|||.|.+.
T Consensus 9 tic~~~~~-g~c~~g~~cr~~h~~~ 32 (344)
T KOG1039|consen 9 TICKYYQK-GNCKFGDLCRLSHSLP 32 (344)
T ss_pred hhhhhccc-ccccccceeeeeccCc
Confidence 79999999 9999999999999776
No 38
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.49 E-value=0.12 Score=52.06 Aligned_cols=27 Identities=41% Similarity=0.906 Sum_probs=24.7
Q ss_pred cccccccccCCCCCCCCCCCCCchhhh
Q 014918 252 PDCRYYMNTGTCKYGADCKFHHPKERI 278 (416)
Q Consensus 252 ~~Cr~y~ktG~Ck~G~~CrF~H~~d~~ 278 (416)
.+|.-|-.||+|-||++|+|.|.+...
T Consensus 187 DicKdykeTgycg~gdSckFlh~r~Dy 213 (313)
T KOG1813|consen 187 DICKDYKETGYCGYGDSCKFLHDRSDY 213 (313)
T ss_pred hhhhhhHhhCcccccchhhhhhhhhhc
Confidence 579999999999999999999988754
No 39
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.52 E-value=0.13 Score=51.74 Aligned_cols=27 Identities=37% Similarity=0.987 Sum_probs=24.6
Q ss_pred ccCcccccccccCCCCCCCCCCCCCCC
Q 014918 298 AICSNYSMYGICKFGPTCRFDHPYAGY 324 (416)
Q Consensus 298 ~~C~~y~~~G~CkfG~~CkF~Hp~~~~ 324 (416)
.+|+.|..||+|-||+.|+|.|....+
T Consensus 187 DicKdykeTgycg~gdSckFlh~r~Dy 213 (313)
T KOG1813|consen 187 DICKDYKETGYCGYGDSCKFLHDRSDY 213 (313)
T ss_pred hhhhhhHhhCcccccchhhhhhhhhhc
Confidence 489999999999999999999998754
No 40
>PF10650 zf-C3H1: Putative zinc-finger domain; InterPro: IPR019607 This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger.
Probab=65.86 E-value=4.4 Score=26.03 Aligned_cols=23 Identities=35% Similarity=0.940 Sum_probs=18.6
Q ss_pred ccccccccccccCCCCCCCCCCCC
Q 014918 93 PDCGYYLKTGTCKYGSTCKYHHPK 116 (416)
Q Consensus 93 ~~Ck~flktG~CkyG~~CrF~Hp~ 116 (416)
+.|.|-++.|.|. -..|.|.|-+
T Consensus 1 ~lC~yEl~Gg~Cn-d~~C~~QHfr 23 (23)
T PF10650_consen 1 PLCPYELTGGVCN-DPDCEFQHFR 23 (23)
T ss_pred CCCccccCCCeeC-CCCCCccccC
Confidence 3699999966997 5889999953
No 41
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=62.98 E-value=1.6 Score=43.22 Aligned_cols=41 Identities=27% Similarity=0.599 Sum_probs=31.3
Q ss_pred CccccccccccccCCCCCCCCCCCCCCCCCCCcccccCCCC
Q 014918 92 QPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSFNILGLP 132 (416)
Q Consensus 92 ~~~Ck~flktG~CkyG~~CrF~Hp~~~~~~~~v~~n~~glP 132 (416)
+.-|.||.++|.|++|++|.=.|.++......|..|..-+|
T Consensus 15 Kv~c~fy~k~gacR~gdrcsR~h~kpt~s~t~ll~nmyq~P 55 (260)
T KOG2202|consen 15 KVNCSFYFKIGACRHGDRCSRLHEKPTFSQTVLLKNMYQNP 55 (260)
T ss_pred ccccchHHhhcccccccHHHHhhcccccchHHHHHHHHhCC
Confidence 35699999999999999999999998776444444443333
No 42
>PF10650 zf-C3H1: Putative zinc-finger domain; InterPro: IPR019607 This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger.
Probab=62.91 E-value=5.1 Score=25.74 Aligned_cols=21 Identities=33% Similarity=0.882 Sum_probs=17.6
Q ss_pred cCcccccccccCCCCCCCCCCC
Q 014918 299 ICSNYSMYGICKFGPTCRFDHP 320 (416)
Q Consensus 299 ~C~~y~~~G~CkfG~~CkF~Hp 320 (416)
+|.|-+..|.|. -+.|.|.|-
T Consensus 2 lC~yEl~Gg~Cn-d~~C~~QHf 22 (23)
T PF10650_consen 2 LCPYELTGGVCN-DPDCEFQHF 22 (23)
T ss_pred CCccccCCCeeC-CCCCCcccc
Confidence 799999955998 569999994
No 43
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=62.60 E-value=6.2 Score=40.88 Aligned_cols=33 Identities=30% Similarity=0.727 Sum_probs=27.7
Q ss_pred CCCCCCCCCcccchhhccCCCCCCCCCCCCCcch
Q 014918 42 SPYPARPGEPDCLFYRRTGLCGYGSNCRFNHPAY 75 (416)
Q Consensus 42 ~~yP~Rpg~~~CryylrtG~C~~G~~C~F~H~~~ 75 (416)
.+|-.|..-.+|.||.+ |.|+.|+.|.|+|...
T Consensus 153 ~p~ykrn~p~Icsf~v~-geckRG~ec~yrhEkp 185 (377)
T KOG0153|consen 153 TPYYKRNRPHICSFFVK-GECKRGAECPYRHEKP 185 (377)
T ss_pred CccccCCCCccccceee-ccccccccccccccCC
Confidence 34557777889999995 8999999999999844
No 44
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=59.83 E-value=6.5 Score=40.71 Aligned_cols=28 Identities=43% Similarity=0.997 Sum_probs=24.4
Q ss_pred CCCCccccccccccccCCCCCCCCCCCCC
Q 014918 89 RNGQPDCGYYLKTGTCKYGSTCKYHHPKD 117 (416)
Q Consensus 89 r~~~~~Ck~flktG~CkyG~~CrF~Hp~~ 117 (416)
+....+|.||.+ |.||.|+.|-|.|.++
T Consensus 158 rn~p~Icsf~v~-geckRG~ec~yrhEkp 185 (377)
T KOG0153|consen 158 RNRPHICSFFVK-GECKRGAECPYRHEKP 185 (377)
T ss_pred CCCCccccceee-ccccccccccccccCC
Confidence 333458999999 9999999999999998
No 45
>PF10283 zf-CCHH: Zinc-finger (CX5CX6HX5H) motif; InterPro: IPR019406 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a C2H2-type Znf motif that in humans is part of the APLF (aprataxin- and PNK-like) forkead association domain-containing protein []. The Znf is highly conserved both in primary sequence and in the spacing between the putative zinc coordinating residues, and is configured CX5CX6HX5H. Many of the proteins containing this Znf are involved in DNA strand break repair and/or contain domains implicated in DNA metabolism. This Znf motif appears to be specialised for the non-covalent binding of poly ADP-ribose; Aprataxin also appears to covalently bind poly ADP-ribose, but not through its Znf motif [].; PDB: 2KQC_A 2KUO_A 2KQE_A 2KQD_A 2KQB_A.
Probab=43.05 E-value=7.2 Score=25.76 Aligned_cols=8 Identities=63% Similarity=1.742 Sum_probs=5.1
Q ss_pred ccCCCCCC
Q 014918 103 TCKYGSTC 110 (416)
Q Consensus 103 ~CkyG~~C 110 (416)
.|+||.+|
T Consensus 2 ~C~YG~~C 9 (26)
T PF10283_consen 2 PCKYGAKC 9 (26)
T ss_dssp E-TTGGG-
T ss_pred CCCcchhh
Confidence 48999999
No 46
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=20.89 E-value=34 Score=36.95 Aligned_cols=36 Identities=17% Similarity=0.307 Sum_probs=29.8
Q ss_pred CCCCCCCcccccccccCCCCCCCCCCCCCchhhhhc
Q 014918 245 LPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQ 280 (416)
Q Consensus 245 ~Perpkq~~Cr~y~ktG~Ck~G~~CrF~H~~d~~~~ 280 (416)
+..|.....|.+|.++|.|..|+.|.++|..+.+..
T Consensus 206 ~ks~~s~~r~k~fee~g~~~r~el~p~~hg~~~vv~ 241 (526)
T KOG2135|consen 206 EKSRNSENRRKFFEEFGVLERGELCPTHHGCVPVVS 241 (526)
T ss_pred ccccccHHhhhhhHhhceeeeccccccccccceeEe
Confidence 344567788999999999999999999998776543
No 47
>KOG3777 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.31 E-value=55 Score=35.18 Aligned_cols=24 Identities=29% Similarity=0.760 Sum_probs=20.8
Q ss_pred CccCcccccccccCCCCCCCCCCCCCC
Q 014918 297 QAICSNYSMYGICKFGPTCRFDHPYAG 323 (416)
Q Consensus 297 ~~~C~~y~~~G~CkfG~~CkF~Hp~~~ 323 (416)
..+|.+-.+ |.||..|+|.|+...
T Consensus 171 ~q~Cpygkk---ctyg~kck~~h~~~~ 194 (443)
T KOG3777|consen 171 KQPCPYGKK---CTYGGKCKFYHPEIA 194 (443)
T ss_pred ccCCCcccc---cCCCCceeecccccc
Confidence 457999888 999999999999754
Done!