Query 014918
Match_columns 416
No_of_seqs 321 out of 1340
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 03:26:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014918.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014918hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cqe_A KIAA1064 protein; CCCH 99.6 8.5E-17 2.9E-21 134.8 2.2 88 42-148 5-95 (98)
2 1m9o_A Tristetraproline; Cys3H 99.5 3.9E-15 1.3E-19 118.1 3.6 68 248-323 9-76 (77)
3 1m9o_A Tristetraproline; Cys3H 99.4 3.6E-14 1.2E-18 112.5 3.8 68 46-117 8-75 (77)
4 2d9n_A Cleavage and polyadenyl 99.4 9.2E-14 3.2E-18 111.2 5.7 68 47-145 7-74 (77)
5 2cqe_A KIAA1064 protein; CCCH 99.3 1.2E-12 4.2E-17 109.5 5.3 56 244-322 6-61 (98)
6 2rhk_C Cleavage and polyadenyl 99.2 2.1E-12 7.1E-17 102.4 2.8 58 47-119 13-70 (72)
7 2d9n_A Cleavage and polyadenyl 99.2 1.1E-11 3.8E-16 99.1 3.3 56 249-323 8-63 (77)
8 2rhk_C Cleavage and polyadenyl 99.1 1.1E-11 3.9E-16 98.1 2.2 56 249-323 14-69 (72)
9 3d2q_A Muscleblind-like protei 99.0 2E-10 6.7E-15 90.3 3.2 59 50-117 6-65 (70)
10 3d2q_A Muscleblind-like protei 98.9 9.4E-11 3.2E-15 92.1 0.3 62 250-324 5-67 (70)
11 2e5s_A Otthump00000018578; ZF- 98.9 1.9E-10 6.6E-15 96.2 1.9 61 48-117 18-79 (98)
12 2e5s_A Otthump00000018578; ZF- 98.9 2.3E-10 7.8E-15 95.8 1.1 62 249-323 18-80 (98)
13 3d2n_A Muscleblind-like protei 98.7 5.6E-09 1.9E-13 84.9 3.5 58 49-117 8-66 (83)
14 3d2n_A Muscleblind-like protei 98.6 1.1E-08 3.7E-13 83.2 2.7 59 250-323 8-67 (83)
15 2rpp_A Muscleblind-like protei 98.6 2.4E-08 8.3E-13 82.2 2.9 58 49-117 16-74 (89)
16 2rpp_A Muscleblind-like protei 98.5 3.8E-08 1.3E-12 81.0 2.1 59 250-323 16-75 (89)
17 3u9g_A Zinc finger CCCH-type a 98.0 6.2E-06 2.1E-10 78.1 5.3 24 251-276 175-198 (229)
18 2d9m_A Zinc finger CCCH-type d 97.5 4.9E-05 1.7E-09 59.6 2.5 30 250-280 19-48 (69)
19 2d9m_A Zinc finger CCCH-type d 97.2 0.00022 7.5E-09 55.9 3.6 37 39-77 10-46 (69)
20 3u9g_A Zinc finger CCCH-type a 97.1 0.00023 7.8E-09 67.5 3.1 44 252-323 152-199 (229)
21 2lhn_A Nuclear polyadenylated 95.5 0.00044 1.5E-08 55.7 0.0 43 50-116 9-51 (80)
22 2fc6_A Nuclear, target of EGR1 96.0 0.0017 5.8E-08 47.7 0.8 29 296-324 19-47 (50)
23 2fc6_A Nuclear, target of EGR1 95.7 0.0043 1.5E-07 45.5 1.9 30 48-77 18-47 (50)
24 2lhn_A Nuclear polyadenylated 94.1 0.0036 1.2E-07 50.4 0.0 22 250-275 8-29 (80)
25 3u1l_A PRE-mRNA-splicing facto 92.1 0.038 1.3E-06 52.6 1.0 25 250-275 69-93 (240)
26 3u1l_A PRE-mRNA-splicing facto 90.3 0.07 2.4E-06 50.8 0.9 26 297-323 70-95 (240)
27 3v33_A Ribonuclease ZC3H12A; r 79.5 0.37 1.3E-05 45.5 0.0 24 297-323 192-215 (223)
28 3v33_A Ribonuclease ZC3H12A; r 75.2 0.59 2E-05 44.2 0.0 24 91-117 191-214 (223)
29 2kqb_A Aprataxin and PNK-like 60.0 4.3 0.00015 33.1 2.2 16 102-117 57-81 (89)
No 1
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=99.61 E-value=8.5e-17 Score=134.78 Aligned_cols=88 Identities=25% Similarity=0.427 Sum_probs=73.1
Q ss_pred CCCCCCCCCcccchhhccCCCCCCCCCCCCCcchhcccccccccCCCCCCCccccccccccccCCCCCCCCCCCCCCCCC
Q 014918 42 SPYPARPGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGA 121 (416)
Q Consensus 42 ~~yP~Rpg~~~CryylrtG~C~~G~~C~F~H~~~~~~~t~~~~~~per~~~~~Ck~flktG~CkyG~~CrF~Hp~~~~~~ 121 (416)
..+..+..+.+|+||+ .|.|++|++|+|+|+ ..+|++|++.|.|++|++|+|.|.......
T Consensus 5 H~~~~~~k~~lC~~f~-~G~C~~G~~C~f~H~------------------~~~C~~f~~~G~C~~G~~C~f~H~~~~~~~ 65 (98)
T 2cqe_A 5 SSGELPKKRELCKFYI-TGFCARAENCPYMHG------------------DFPCKLYHTTGNCINGDDCMFSHDPLTEET 65 (98)
T ss_dssp CCCCCSCCCSBCTTTT-TTCCSCSTTCSSBSS------------------SSBCSHHHHTSCCSSCTTCSSBCCCCCHHH
T ss_pred ccCCCCCCCccCcccc-cCcCCCCCCCCCCCC------------------CCcCcCcccCCcCCCCCCCcccCCCCcccc
Confidence 3456667899999998 699999999999998 146999987799999999999999653321
Q ss_pred C---CcccccCCCCCCCCCCCccccccccc
Q 014918 122 G---PVSFNILGLPMRQDEKSCPYYMRTGS 148 (416)
Q Consensus 122 ~---~v~~n~~glP~R~~e~eC~fY~ktG~ 148 (416)
. ...++..+.++|.+|+||.+|+|+|.
T Consensus 66 ~~~l~~~l~~~~~~~~~~e~e~~~~~k~~~ 95 (98)
T 2cqe_A 66 RELLDKMLADDAEAGAEDEKEVEELKKSGP 95 (98)
T ss_dssp HHHHHHHHHHHHHSCCCCCCCCCCSCCCCC
T ss_pred hhHHhhhcchhhhhccCCcHHHHHHHHcCC
Confidence 1 13477888999999999999999995
No 2
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=99.52 E-value=3.9e-15 Score=118.11 Aligned_cols=68 Identities=29% Similarity=0.717 Sum_probs=29.7
Q ss_pred CCCCcccccccccCCCCCCCCCCCCCchhhhhccccccCCCCCCCCCCCCccCcccccccccCCCCCCCCCCCCCC
Q 014918 248 RPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAG 323 (416)
Q Consensus 248 rpkq~~Cr~y~ktG~Ck~G~~CrF~H~~d~~~~~~~~~l~~~g~P~rp~~~~C~~y~~~G~CkfG~~CkF~Hp~~~ 323 (416)
+.++++|++|+++|.|+||+.|+|+|+.+++.... ...+.++.+|++|..+|.|++|.+|+|+|+..+
T Consensus 9 ~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~~~--------~~~~~k~~~C~~f~~~G~C~~G~~C~f~H~~~e 76 (77)
T 1m9o_A 9 RYKTELCRTYSESGRCRYGAKCQFAHGLGELRQAN--------RHPKYKTELCHKFKLQGRCPYGSRCHFIHNPTE 76 (77)
T ss_dssp CCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGGTC-----------------------------------------
T ss_pred CccchhCHHhhhCCCcCCCCCccCCCCChhhcccc--------ccccccCCcccchhhCcCCCCcCcCCCCCCCCC
Confidence 46899999999889999999999999887765431 122456789998888899999999999998653
No 3
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=99.44 E-value=3.6e-14 Score=112.52 Aligned_cols=68 Identities=28% Similarity=0.589 Sum_probs=28.7
Q ss_pred CCCCCcccchhhccCCCCCCCCCCCCCcchhcccccccccCCCCCCCccccccccccccCCCCCCCCCCCCC
Q 014918 46 ARPGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKD 117 (416)
Q Consensus 46 ~Rpg~~~CryylrtG~C~~G~~C~F~H~~~~~~~t~~~~~~per~~~~~Ck~flktG~CkyG~~CrF~Hp~~ 117 (416)
.+.++.+|++|+++|.|++|++|+|+|+........ .....++.+|++|+.+|.|+||++|+|.|...
T Consensus 8 ~~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~~~----~~~~~k~~~C~~f~~~G~C~~G~~C~f~H~~~ 75 (77)
T 1m9o_A 8 SRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQAN----RHPKYKTELCHKFKLQGRCPYGSRCHFIHNPT 75 (77)
T ss_dssp SCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGGTC------------------------------------
T ss_pred CCccchhCHHhhhCCCcCCCCCccCCCCChhhcccc----ccccccCCcccchhhCcCCCCcCcCCCCCCCC
Confidence 356789999998889999999999999976443211 12345678899888889999999999999864
No 4
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=9.2e-14 Score=111.23 Aligned_cols=68 Identities=29% Similarity=0.660 Sum_probs=57.2
Q ss_pred CCCCcccchhhccCCCCCCCCCCCCCcchhcccccccccCCCCCCCccccccccccccCCCCCCCCCCCCCCCCCCCccc
Q 014918 47 RPGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSF 126 (416)
Q Consensus 47 Rpg~~~CryylrtG~C~~G~~C~F~H~~~~~~~t~~~~~~per~~~~~Ck~flktG~CkyG~~CrF~Hp~~~~~~~~v~~ 126 (416)
...+++|+||++ |.|++|++|+|+|+.... ..++|+||+++|.|. |++|+|.|.....
T Consensus 7 ~~k~~~C~~fl~-G~C~~G~~C~fsH~~~~~-------------~~~~C~~f~~~G~C~-~~~C~f~H~~~~~------- 64 (77)
T 2d9n_A 7 GEKTVVCKHWLR-GLCKKGDQCEFLHEYDMT-------------KMPECYFYSKFGECS-NKECPFLHIDPES------- 64 (77)
T ss_dssp CCTTSBCHHHHT-TCCSCTTSSSSBCSCCTT-------------TSCBCHHHHHTCCCC-CSSCSSBCCCTTS-------
T ss_pred CCcceeCHhHcc-CcCCCCCCCCCccccccC-------------cCCCCcccCCCCccC-CCCeeccCCCccc-------
Confidence 345789999996 999999999999996542 245799999999999 9999999998643
Q ss_pred ccCCCCCCCCCCCcccccc
Q 014918 127 NILGLPMRQDEKSCPYYMR 145 (416)
Q Consensus 127 n~~glP~R~~e~eC~fY~k 145 (416)
..++|.+|.+
T Consensus 65 ---------~~~~C~~f~~ 74 (77)
T 2d9n_A 65 ---------KIKDCPWSGP 74 (77)
T ss_dssp ---------SCSSSSCCTT
T ss_pred ---------cCCCCccccc
Confidence 3579999986
No 5
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=99.31 E-value=1.2e-12 Score=109.45 Aligned_cols=56 Identities=25% Similarity=0.588 Sum_probs=48.8
Q ss_pred CCCCCCCCcccccccccCCCCCCCCCCCCCchhhhhccccccCCCCCCCCCCCCccCcccccccccCCCCCCCCCCCCC
Q 014918 244 NLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYA 322 (416)
Q Consensus 244 ~~Perpkq~~Cr~y~ktG~Ck~G~~CrF~H~~d~~~~~~~~~l~~~g~P~rp~~~~C~~y~~~G~CkfG~~CkF~Hp~~ 322 (416)
.+..+.++++|+||++ |.|++|+.|+|+|+ ..+|++|+.+|.|++|++|+|.|+..
T Consensus 6 ~~~~~~k~~lC~~f~~-G~C~~G~~C~f~H~----------------------~~~C~~f~~~G~C~~G~~C~f~H~~~ 61 (98)
T 2cqe_A 6 SGELPKKRELCKFYIT-GFCARAENCPYMHG----------------------DFPCKLYHTTGNCINGDDCMFSHDPL 61 (98)
T ss_dssp CCCCSCCCSBCTTTTT-TCCSCSTTCSSBSS----------------------SSBCSHHHHTSCCSSCTTCSSBCCCC
T ss_pred cCCCCCCCccCccccc-CcCCCCCCCCCCCC----------------------CCcCcCcccCCcCCCCCCCcccCCCC
Confidence 4455569999999986 99999999999996 35899998669999999999999954
No 6
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=99.24 E-value=2.1e-12 Score=102.37 Aligned_cols=58 Identities=28% Similarity=0.616 Sum_probs=49.2
Q ss_pred CCCCcccchhhccCCCCCCCCCCCCCcchhcccccccccCCCCCCCccccccccccccCCCCCCCCCCCCCCC
Q 014918 47 RPGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRN 119 (416)
Q Consensus 47 Rpg~~~CryylrtG~C~~G~~C~F~H~~~~~~~t~~~~~~per~~~~~Ck~flktG~CkyG~~CrF~Hp~~~~ 119 (416)
+...++|+||++ |.|++|++|+|+|+.+.. ..++|+||++.|.|.+ ++|+|.|..+..
T Consensus 13 ~~k~~vCk~fl~-G~C~~G~~C~fsH~~~~~-------------~~~~C~~f~~~G~C~~-~~C~y~H~~p~~ 70 (72)
T 2rhk_C 13 GEKTVVCKHWLR-GLCKKGDQCEFLHEYDMT-------------KMSECYFYSKFGECSN-KECPFLHIDPES 70 (72)
T ss_dssp CCCCSBCHHHHT-TCCCCGGGSSSBCSCCTT-------------SCCBCHHHHHHSCCSB-TTCCSBCCCCC-
T ss_pred CCcCeeCHHHhc-CCCCCCCCCCCccccccc-------------cCCcccccCCCCCCCC-CCeeccCCCccc
Confidence 456789999997 999999999999996532 2468999999999999 999999998643
No 7
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=1.1e-11 Score=99.08 Aligned_cols=56 Identities=29% Similarity=0.630 Sum_probs=48.6
Q ss_pred CCCcccccccccCCCCCCCCCCCCCchhhhhccccccCCCCCCCCCCCCccCcccccccccCCCCCCCCCCCCCC
Q 014918 249 PDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAG 323 (416)
Q Consensus 249 pkq~~Cr~y~ktG~Ck~G~~CrF~H~~d~~~~~~~~~l~~~g~P~rp~~~~C~~y~~~G~CkfG~~CkF~Hp~~~ 323 (416)
.++++|+||++ |.|++|+.|+|+|+.+.. +..+|+||+++|.|. |++|+|.|....
T Consensus 8 ~k~~~C~~fl~-G~C~~G~~C~fsH~~~~~-----------------~~~~C~~f~~~G~C~-~~~C~f~H~~~~ 63 (77)
T 2d9n_A 8 EKTVVCKHWLR-GLCKKGDQCEFLHEYDMT-----------------KMPECYFYSKFGECS-NKECPFLHIDPE 63 (77)
T ss_dssp CTTSBCHHHHT-TCCSCTTSSSSBCSCCTT-----------------TSCBCHHHHHTCCCC-CSSCSSBCCCTT
T ss_pred CcceeCHhHcc-CcCCCCCCCCCccccccC-----------------cCCCCcccCCCCccC-CCCeeccCCCcc
Confidence 47899999999 999999999999975421 246899999999999 999999999764
No 8
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=99.13 E-value=1.1e-11 Score=98.09 Aligned_cols=56 Identities=29% Similarity=0.614 Sum_probs=48.8
Q ss_pred CCCcccccccccCCCCCCCCCCCCCchhhhhccccccCCCCCCCCCCCCccCcccccccccCCCCCCCCCCCCCC
Q 014918 249 PDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAG 323 (416)
Q Consensus 249 pkq~~Cr~y~ktG~Ck~G~~CrF~H~~d~~~~~~~~~l~~~g~P~rp~~~~C~~y~~~G~CkfG~~CkF~Hp~~~ 323 (416)
.++++|+||++ |.|++|+.|+|+|+.+.. +..+|+||+++|.|.+ ++|+|.|..+.
T Consensus 14 ~k~~vCk~fl~-G~C~~G~~C~fsH~~~~~-----------------~~~~C~~f~~~G~C~~-~~C~y~H~~p~ 69 (72)
T 2rhk_C 14 EKTVVCKHWLR-GLCKKGDQCEFLHEYDMT-----------------KMSECYFYSKFGECSN-KECPFLHIDPE 69 (72)
T ss_dssp CCCSBCHHHHT-TCCCCGGGSSSBCSCCTT-----------------SCCBCHHHHHHSCCSB-TTCCSBCCCCC
T ss_pred CcCeeCHHHhc-CCCCCCCCCCCccccccc-----------------cCCcccccCCCCCCCC-CCeeccCCCcc
Confidence 57899999999 999999999999975321 2569999999999999 99999999764
No 9
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=98.97 E-value=2e-10 Score=90.31 Aligned_cols=59 Identities=39% Similarity=0.751 Sum_probs=46.5
Q ss_pred CcccchhhccCCCCCCC-CCCCCCcchhcccccccccCCCCCCCccccccccccccCCCCCCCCCCCCC
Q 014918 50 EPDCLFYRRTGLCGYGS-NCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKD 117 (416)
Q Consensus 50 ~~~CryylrtG~C~~G~-~C~F~H~~~~~~~t~~~~~~per~~~~~Ck~flktG~CkyG~~CrF~Hp~~ 117 (416)
.++|++|++ |.|..|+ .|+|+|+...... .......++|++|++ |.|..| .|+|.|+..
T Consensus 6 ~~vC~~f~~-G~C~rg~~~C~f~H~~~~~~~------~~~~~~~~vC~~flk-G~C~r~-~C~y~H~~~ 65 (70)
T 3d2q_A 6 LEVCREYQR-GNCNRGENDCRFAHPADSTMI------DTNDNTVTVCMDYIK-GRCSRE-KCKYFHPPA 65 (70)
T ss_dssp EEBCHHHHT-TCCSSCTTTCSSBCCCTTSCC------BTTTTEEEBCHHHHT-TCCCCT-TCCSBCCCH
T ss_pred chhCHHHhc-CCCCCCCCCCCCccCcccccc------cccCCcceeccccCc-CCCCCC-CcCeeCCHH
Confidence 468999985 9999999 5999999653211 011234578999999 999999 999999864
No 10
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=98.94 E-value=9.4e-11 Score=92.14 Aligned_cols=62 Identities=31% Similarity=0.718 Sum_probs=48.9
Q ss_pred CCcccccccccCCCCCCC-CCCCCCchhhhhccccccCCCCCCCCCCCCccCcccccccccCCCCCCCCCCCCCCC
Q 014918 250 DQPDCRYYMNTGTCKYGA-DCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGY 324 (416)
Q Consensus 250 kq~~Cr~y~ktG~Ck~G~-~CrF~H~~d~~~~~~~~~l~~~g~P~rp~~~~C~~y~~~G~CkfG~~CkF~Hp~~~~ 324 (416)
+.++|++|++ |.|+.|+ .|+|+|+.+..... +...+..+|.+|++ |.|..| .|+|.|+...|
T Consensus 5 k~~vC~~f~~-G~C~rg~~~C~f~H~~~~~~~~----------~~~~~~~vC~~flk-G~C~r~-~C~y~H~~~~L 67 (70)
T 3d2q_A 5 RLEVCREYQR-GNCNRGENDCRFAHPADSTMID----------TNDNTVTVCMDYIK-GRCSRE-KCKYFHPPAHL 67 (70)
T ss_dssp EEEBCHHHHT-TCCSSCTTTCSSBCCCTTSCCB----------TTTTEEEBCHHHHT-TCCCCT-TCCSBCCCHHH
T ss_pred cchhCHHHhc-CCCCCCCCCCCCccCccccccc----------ccCCcceeccccCc-CCCCCC-CcCeeCCHHHH
Confidence 5579999988 9999999 59999987543211 11223679999999 999999 99999997643
No 11
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.93 E-value=1.9e-10 Score=96.21 Aligned_cols=61 Identities=36% Similarity=0.690 Sum_probs=48.5
Q ss_pred CCCcccchhhccCCCCCCC-CCCCCCcchhcccccccccCCCCCCCccccccccccccCCCCCCCCCCCCC
Q 014918 48 PGEPDCLFYRRTGLCGYGS-NCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKD 117 (416)
Q Consensus 48 pg~~~CryylrtG~C~~G~-~C~F~H~~~~~~~t~~~~~~per~~~~~Ck~flktG~CkyG~~CrF~Hp~~ 117 (416)
...++|++|+| |.|..|+ .|+|+|+.+.... .......++|.+|++ |.|.+| .|+|.|+..
T Consensus 18 ~k~~VCr~Flr-G~C~rgd~~C~FsH~~~~~~~------~~~~~~~~vC~~flk-G~C~r~-~C~y~H~~~ 79 (98)
T 2e5s_A 18 DKLEVCREFQR-GNCARGETDCRFAHPADSTMI------DTSDNTVTVCMDYIK-GRCMRE-KCKYFHPPA 79 (98)
T ss_dssp SEEEBCSHHHH-TCCSSHHHHCSSBCCSSCCSC------CTTTCEEEBCHHHHH-TCCCCT-TCCSBCCCH
T ss_pred hhhhhhHHHhc-CcCCCCCCCCCCcCCchhccc------cccCCccccchhhcc-CCCCCC-CcCccCChH
Confidence 34689999997 9999999 7999999754211 011234578999999 999999 999999975
No 12
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.90 E-value=2.3e-10 Score=95.79 Aligned_cols=62 Identities=31% Similarity=0.697 Sum_probs=50.3
Q ss_pred CCCcccccccccCCCCCCC-CCCCCCchhhhhccccccCCCCCCCCCCCCccCcccccccccCCCCCCCCCCCCCC
Q 014918 249 PDQPDCRYYMNTGTCKYGA-DCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAG 323 (416)
Q Consensus 249 pkq~~Cr~y~ktG~Ck~G~-~CrF~H~~d~~~~~~~~~l~~~g~P~rp~~~~C~~y~~~G~CkfG~~CkF~Hp~~~ 323 (416)
-+.++|++|++ |.|+.|+ .|+|+|+.+..... +......+|.+|++ |.|..| .|+|.|+...
T Consensus 18 ~k~~VCr~Flr-G~C~rgd~~C~FsH~~~~~~~~----------~~~~~~~vC~~flk-G~C~r~-~C~y~H~~~~ 80 (98)
T 2e5s_A 18 DKLEVCREFQR-GNCARGETDCRFAHPADSTMID----------TSDNTVTVCMDYIK-GRCMRE-KCKYFHPPAH 80 (98)
T ss_dssp SEEEBCSHHHH-TCCSSHHHHCSSBCCSSCCSCC----------TTTCEEEBCHHHHH-TCCCCT-TCCSBCCCHH
T ss_pred hhhhhhHHHhc-CcCCCCCCCCCCcCCchhcccc----------ccCCccccchhhcc-CCCCCC-CcCccCChHH
Confidence 36789999999 9999999 79999987654211 11233679999999 999999 9999999764
No 13
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=98.71 E-value=5.6e-09 Score=84.88 Aligned_cols=58 Identities=33% Similarity=0.644 Sum_probs=46.4
Q ss_pred CCcccchhhccCCCCCCC-CCCCCCcchhcccccccccCCCCCCCccccccccccccCCCCCCCCCCCCC
Q 014918 49 GEPDCLFYRRTGLCGYGS-NCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKD 117 (416)
Q Consensus 49 g~~~CryylrtG~C~~G~-~C~F~H~~~~~~~t~~~~~~per~~~~~Ck~flktG~CkyG~~CrF~Hp~~ 117 (416)
..++|++|+| |.|..|+ .|+|+|+....... ....++|.+|++ |.|..+ .|+|.|+..
T Consensus 8 ~~~VCr~Flr-G~C~r~d~~C~f~H~~~~~~~~--------~~~~~vC~dflk-G~C~r~-~C~y~H~~~ 66 (83)
T 3d2n_A 8 TLEVCREFQR-GTCSRPDTECKFAHPSKSCQVE--------NGRVIACFDSLK-GRCSRE-NCKYLHPPP 66 (83)
T ss_dssp EEEBCTTGGG-TCCCSCTTTCSSBCCCTTCCEE--------TTEEECCHHHHT-TCCCCS-SCSSCCCCH
T ss_pred cchhcHHHhc-CCCCCCCCCCCCcCCCcccccc--------CCceeehhHhhh-ccccCC-CcceeCChH
Confidence 3578999997 9999997 99999996532110 112468999999 999998 999999975
No 14
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=98.63 E-value=1.1e-08 Score=83.23 Aligned_cols=59 Identities=27% Similarity=0.581 Sum_probs=47.4
Q ss_pred CCcccccccccCCCCCCC-CCCCCCchhhhhccccccCCCCCCCCCCCCccCcccccccccCCCCCCCCCCCCCC
Q 014918 250 DQPDCRYYMNTGTCKYGA-DCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAG 323 (416)
Q Consensus 250 kq~~Cr~y~ktG~Ck~G~-~CrF~H~~d~~~~~~~~~l~~~g~P~rp~~~~C~~y~~~G~CkfG~~CkF~Hp~~~ 323 (416)
+.++|++|++ |.|+.|+ .|+|+|+...+... .-...+|.+|++ |.|..+ .|+|.|+...
T Consensus 8 ~~~VCr~Flr-G~C~r~d~~C~f~H~~~~~~~~------------~~~~~vC~dflk-G~C~r~-~C~y~H~~~~ 67 (83)
T 3d2n_A 8 TLEVCREFQR-GTCSRPDTECKFAHPSKSCQVE------------NGRVIACFDSLK-GRCSRE-NCKYLHPPPH 67 (83)
T ss_dssp EEEBCTTGGG-TCCCSCTTTCSSBCCCTTCCEE------------TTEEECCHHHHT-TCCCCS-SCSSCCCCHH
T ss_pred cchhcHHHhc-CCCCCCCCCCCCcCCCcccccc------------CCceeehhHhhh-ccccCC-CcceeCChHH
Confidence 4578999999 9999997 99999986532111 012569999999 999998 9999999754
No 15
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=98.55 E-value=2.4e-08 Score=82.18 Aligned_cols=58 Identities=34% Similarity=0.683 Sum_probs=46.7
Q ss_pred CCcccchhhccCCCCCCC-CCCCCCcchhcccccccccCCCCCCCccccccccccccCCCCCCCCCCCCC
Q 014918 49 GEPDCLFYRRTGLCGYGS-NCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKD 117 (416)
Q Consensus 49 g~~~CryylrtG~C~~G~-~C~F~H~~~~~~~t~~~~~~per~~~~~Ck~flktG~CkyG~~CrF~Hp~~ 117 (416)
..++|++|+| |.|..|+ .|+|+|+...... +....++|.+|++ |.|..+ .|+|.|+..
T Consensus 16 ~~~VCrdFlr-G~C~r~d~~CrfsH~~~~~~v--------~~~~~~vC~dflk-G~C~r~-~Cky~H~~~ 74 (89)
T 2rpp_A 16 TLEVCRQFQR-GTCSRSDEECKFAHPPKSCQV--------ENGRVIACFDSLK-GRCSRE-NCKYLHPPT 74 (89)
T ss_dssp EECBCHHHHH-TCCCCCTTTSSSBCCCSSSCC--------BTTBEEBCHHHHH-TCCCCT-TCCSBCCCH
T ss_pred hhhhchHHhc-CCCCCCCCCCCCcCCCccccc--------cCCceeeehhhhh-CcCCCC-CcceecCHH
Confidence 3679999998 9999998 9999999664210 0113478999999 999987 999999975
No 16
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=98.48 E-value=3.8e-08 Score=81.05 Aligned_cols=59 Identities=27% Similarity=0.595 Sum_probs=47.5
Q ss_pred CCcccccccccCCCCCCC-CCCCCCchhhhhccccccCCCCCCCCCCCCccCcccccccccCCCCCCCCCCCCCC
Q 014918 250 DQPDCRYYMNTGTCKYGA-DCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAG 323 (416)
Q Consensus 250 kq~~Cr~y~ktG~Ck~G~-~CrF~H~~d~~~~~~~~~l~~~g~P~rp~~~~C~~y~~~G~CkfG~~CkF~Hp~~~ 323 (416)
+.++|++|++ |.|+.|+ .|+|+|+.+..... .-...+|.+|++ |.|.-+ .|+|.|+...
T Consensus 16 ~~~VCrdFlr-G~C~r~d~~CrfsH~~~~~~v~------------~~~~~vC~dflk-G~C~r~-~Cky~H~~~h 75 (89)
T 2rpp_A 16 TLEVCRQFQR-GTCSRSDEECKFAHPPKSCQVE------------NGRVIACFDSLK-GRCSRE-NCKYLHPPTH 75 (89)
T ss_dssp EECBCHHHHH-TCCCCCTTTSSSBCCCSSSCCB------------TTBEEBCHHHHH-TCCCCT-TCCSBCCCHH
T ss_pred hhhhchHHhc-CCCCCCCCCCCCcCCCcccccc------------CCceeeehhhhh-CcCCCC-CcceecCHHH
Confidence 4679999999 9999998 99999987542111 012579999999 999988 9999999754
No 17
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=97.96 E-value=6.2e-06 Score=78.12 Aligned_cols=24 Identities=25% Similarity=0.591 Sum_probs=20.5
Q ss_pred CcccccccccCCCCCCCCCCCCCchh
Q 014918 251 QPDCRYYMNTGTCKYGADCKFHHPKE 276 (416)
Q Consensus 251 q~~Cr~y~ktG~Ck~G~~CrF~H~~d 276 (416)
--+|++|.+ |.|+| ..|+-+|...
T Consensus 175 LHIC~~Fl~-G~C~f-~~CkRsH~~~ 198 (229)
T 3u9g_A 175 LHICEHFTR-GNCSY-LNCLRSHNLM 198 (229)
T ss_dssp BCSCHHHHT-TCCCC-SSCSSCCCTT
T ss_pred eeccchhhc-CCcCC-CCccCccCcc
Confidence 346999999 99999 7999999763
No 18
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.45 E-value=4.9e-05 Score=59.64 Aligned_cols=30 Identities=40% Similarity=0.787 Sum_probs=26.8
Q ss_pred CCcccccccccCCCCCCCCCCCCCchhhhhc
Q 014918 250 DQPDCRYYMNTGTCKYGADCKFHHPKERIAQ 280 (416)
Q Consensus 250 kq~~Cr~y~ktG~Ck~G~~CrF~H~~d~~~~ 280 (416)
+..+|+.|++ |.|+||+.|.|+|..+++..
T Consensus 19 k~~LC~~~~~-G~C~~G~~C~FAHG~~ELr~ 48 (69)
T 2d9m_A 19 YFSICDRYMN-GTCPEGNSCKFAHGNAELHE 48 (69)
T ss_dssp CCSBCHHHHH-SCCSSCSSCSSBSSHHHHHH
T ss_pred CcccCcccCc-CCCCCCCccCCcCCHHHHhh
Confidence 5699999965 99999999999999988864
No 19
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.21 E-value=0.00022 Score=55.94 Aligned_cols=37 Identities=24% Similarity=0.459 Sum_probs=28.5
Q ss_pred cCCCCCCCCCCCcccchhhccCCCCCCCCCCCCCcchhc
Q 014918 39 AQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHPAYAA 77 (416)
Q Consensus 39 ~~~~~yP~Rpg~~~CryylrtG~C~~G~~C~F~H~~~~~ 77 (416)
.+.-.+|.. ...+|+.|+ .|.|+||++|.|+|...+.
T Consensus 10 ~W~~R~P~~-k~~LC~~~~-~G~C~~G~~C~FAHG~~EL 46 (69)
T 2d9m_A 10 CWQHRFPTG-YFSICDRYM-NGTCPEGNSCKFAHGNAEL 46 (69)
T ss_dssp CCCCCCCCS-CCSBCHHHH-HSCCSSCSSCSSBSSHHHH
T ss_pred cccccCCCC-CcccCcccC-cCCCCCCCccCCcCCHHHH
Confidence 344445544 349999996 7999999999999997654
No 20
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=97.08 E-value=0.00023 Score=67.46 Aligned_cols=44 Identities=27% Similarity=0.679 Sum_probs=39.6
Q ss_pred cccccccc----cCCCCCCCCCCCCCchhhhhccccccCCCCCCCCCCCCccCcccccccccCCCCCCCCCCCCCC
Q 014918 252 PDCRYYMN----TGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAG 323 (416)
Q Consensus 252 ~~Cr~y~k----tG~Ck~G~~CrF~H~~d~~~~~~~~~l~~~g~P~rp~~~~C~~y~~~G~CkfG~~CkF~Hp~~~ 323 (416)
++|.+| + .|.|++++.|...| +|.+|++ |.|+| ..|+-.|....
T Consensus 152 eiC~~Y-kG~g~~g~C~~~~~C~kLH-------------------------IC~~Fl~-G~C~f-~~CkRsH~~~~ 199 (229)
T 3u9g_A 152 EICKSY-KGEGRKQTCGQPQPCERLH-------------------------ICEHFTR-GNCSY-LNCLRSHNLMD 199 (229)
T ss_dssp CBCTTC-CCSSSCCSCSSSSCCCSBC-------------------------SCHHHHT-TCCCC-SSCSSCCCTTS
T ss_pred hHHHHh-CCCCCCCcCCCCCCCccee-------------------------ccchhhc-CCcCC-CCccCccCccC
Confidence 489999 7 36999999999999 8999999 99999 79999999643
No 21
>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}
Probab=95.49 E-value=0.00044 Score=55.74 Aligned_cols=43 Identities=23% Similarity=0.565 Sum_probs=35.1
Q ss_pred CcccchhhccCCCCCCCCCCCCCcchhcccccccccCCCCCCCccccccccccccCCCCCCCCCCCC
Q 014918 50 EPDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPK 116 (416)
Q Consensus 50 ~~~CryylrtG~C~~G~~C~F~H~~~~~~~t~~~~~~per~~~~~Ck~flktG~CkyG~~CrF~Hp~ 116 (416)
.+.|+||.. |+. ..|.|.|+... ..|+|+.. |+. ..|.|.|+.
T Consensus 9 ~e~CKf~~~---Ctn-~~C~f~Hp~~~----------------~~Cr~g~~---C~~-~~C~f~HP~ 51 (80)
T 2lhn_A 9 LEQCKFGTH---CTN-KRCKYRHARSH----------------IMCREGAN---CTR-IDCLFGHPI 51 (80)
Confidence 578999985 999 99999997532 35999876 997 789999983
No 22
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=95.97 E-value=0.0017 Score=47.66 Aligned_cols=29 Identities=41% Similarity=0.957 Sum_probs=26.2
Q ss_pred CCccCcccccccccCCCCCCCCCCCCCCC
Q 014918 296 GQAICSNYSMYGICKFGPTCRFDHPYAGY 324 (416)
Q Consensus 296 ~~~~C~~y~~~G~CkfG~~CkF~Hp~~~~ 324 (416)
.+.+|.-|..+|+|+.|..|.|.|.....
T Consensus 19 ~~~iC~~FSayGwCp~G~~Cp~SHDiDl~ 47 (50)
T 2fc6_A 19 PTSICDNFSAYGWCPLGPQCPQSHDISGP 47 (50)
T ss_dssp CSCBCSHHHHTCCCTTGGGCSSBCCCCCC
T ss_pred ccchhhhccccccCCCCCCCCccccCCCC
Confidence 47899999999999999999999998743
No 23
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=95.65 E-value=0.0043 Score=45.53 Aligned_cols=30 Identities=20% Similarity=0.406 Sum_probs=27.1
Q ss_pred CCCcccchhhccCCCCCCCCCCCCCcchhc
Q 014918 48 PGEPDCLFYRRTGLCGYGSNCRFNHPAYAA 77 (416)
Q Consensus 48 pg~~~CryylrtG~C~~G~~C~F~H~~~~~ 77 (416)
..+.+|.-|...|.|++|.+|.|+|+++..
T Consensus 18 ~~~~iC~~FSayGwCp~G~~Cp~SHDiDl~ 47 (50)
T 2fc6_A 18 HPTSICDNFSAYGWCPLGPQCPQSHDISGP 47 (50)
T ss_dssp CCSCBCSHHHHTCCCTTGGGCSSBCCCCCC
T ss_pred cccchhhhccccccCCCCCCCCccccCCCC
Confidence 468999999999999999999999998753
No 24
>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}
Probab=94.14 E-value=0.0036 Score=50.44 Aligned_cols=22 Identities=23% Similarity=0.819 Sum_probs=17.3
Q ss_pred CCcccccccccCCCCCCCCCCCCCch
Q 014918 250 DQPDCRYYMNTGTCKYGADCKFHHPK 275 (416)
Q Consensus 250 kq~~Cr~y~ktG~Ck~G~~CrF~H~~ 275 (416)
..+.|+|+.. |+. ..|.|.|+.
T Consensus 8 ~~e~CKf~~~---Ctn-~~C~f~Hp~ 29 (80)
T 2lhn_A 8 SLEQCKFGTH---CTN-KRCKYRHAR 29 (80)
Confidence 3467998886 888 889999964
No 25
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=92.12 E-value=0.038 Score=52.63 Aligned_cols=25 Identities=24% Similarity=0.685 Sum_probs=22.6
Q ss_pred CCcccccccccCCCCCCCCCCCCCch
Q 014918 250 DQPDCRYYMNTGTCKYGADCKFHHPK 275 (416)
Q Consensus 250 kq~~Cr~y~ktG~Ck~G~~CrF~H~~ 275 (416)
....|.||.+ |.|+.|+.|.|.|.+
T Consensus 69 ~~~~C~ffak-G~C~~G~~C~y~H~l 93 (240)
T 3u1l_A 69 QLFFCLFFAK-GMCCLGPKCEYLHHI 93 (240)
T ss_dssp CCSBCHHHHT-TCCSCGGGCSSBBSC
T ss_pred CCeEcCcccc-CCCCCCCCCCccCCC
Confidence 4569999999 999999999999964
No 26
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=90.31 E-value=0.07 Score=50.78 Aligned_cols=26 Identities=27% Similarity=0.768 Sum_probs=23.5
Q ss_pred CccCcccccccccCCCCCCCCCCCCCC
Q 014918 297 QAICSNYSMYGICKFGPTCRFDHPYAG 323 (416)
Q Consensus 297 ~~~C~~y~~~G~CkfG~~CkF~Hp~~~ 323 (416)
..+|.||.+ |.|+.|..|.|.|-++.
T Consensus 70 ~~~C~ffak-G~C~~G~~C~y~H~lPt 95 (240)
T 3u1l_A 70 LFFCLFFAK-GMCCLGPKCEYLHHIPD 95 (240)
T ss_dssp CSBCHHHHT-TCCSCGGGCSSBBSCCC
T ss_pred CeEcCcccc-CCCCCCCCCCccCCCCC
Confidence 459999999 99999999999998765
No 27
>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens}
Probab=79.54 E-value=0.37 Score=45.53 Aligned_cols=24 Identities=33% Similarity=0.719 Sum_probs=0.0
Q ss_pred CccCcccccccccCCCCCCCCCCCCCC
Q 014918 297 QAICSNYSMYGICKFGPTCRFDHPYAG 323 (416)
Q Consensus 297 ~~~C~~y~~~G~CkfG~~CkF~Hp~~~ 323 (416)
..+|+|-.+ |.||.+|||.||...
T Consensus 192 ~~~~~~~~~---~~~~~~~~~~~~~~~ 215 (223)
T 3v33_A 192 KQPCPYGRK---CTYGIKCRFFHPERP 215 (223)
T ss_dssp ---------------------------
T ss_pred CCCCCCCcc---cccCCcceecCCccC
Confidence 568999888 999999999999864
No 28
>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens}
Probab=75.22 E-value=0.59 Score=44.19 Aligned_cols=24 Identities=38% Similarity=1.003 Sum_probs=0.0
Q ss_pred CCccccccccccccCCCCCCCCCCCCC
Q 014918 91 GQPDCGYYLKTGTCKYGSTCKYHHPKD 117 (416)
Q Consensus 91 ~~~~Ck~flktG~CkyG~~CrF~Hp~~ 117 (416)
+...|.|-.+ |.||.+|+|.|++.
T Consensus 191 ~~~~~~~~~~---~~~~~~~~~~~~~~ 214 (223)
T 3v33_A 191 RKQPCPYGRK---CTYGIKCRFFHPER 214 (223)
T ss_dssp ---------------------------
T ss_pred CCCCCCCCcc---cccCCcceecCCcc
Confidence 3456998766 99999999999975
No 29
>2kqb_A Aprataxin and PNK-like factor; ADP-ribosylation, DNA damage, DNA repair, metal-binding, nucleotide-binding, nucleus, zinc, zinc-finger, lyase; NMR {Homo sapiens} PDB: 2kqc_A 2kqd_A* 2kqe_A*
Probab=59.96 E-value=4.3 Score=33.07 Aligned_cols=16 Identities=38% Similarity=0.995 Sum_probs=0.0
Q ss_pred cccCCCCCC---------CCCCCCC
Q 014918 102 GTCKYGSTC---------KYHHPKD 117 (416)
Q Consensus 102 G~CkyG~~C---------rF~Hp~~ 117 (416)
-.|+||..| .|.|+..
T Consensus 57 p~C~YG~~CYRkNp~H~~ey~Hp~~ 81 (89)
T 2kqb_A 57 PECPYGPSCYRKNPQHKIEYRHNTL 81 (89)
T ss_dssp -------------------------
T ss_pred CCCCCchhhhcCCHHHHHhccCCCC
Confidence 458899999 6777764
Done!