Query 014919
Match_columns 416
No_of_seqs 452 out of 3324
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 01:21:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014919.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014919hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03034 phosphoglycerate kina 100.0 1.5E-62 3.1E-67 495.0 16.8 214 2-218 262-479 (481)
2 COG0126 Pgk 3-phosphoglycerate 100.0 9.2E-63 2E-67 481.6 14.9 205 1-215 185-393 (395)
3 cd00318 Phosphoglycerate_kinas 100.0 1.9E-62 4.2E-67 489.0 17.0 209 2-213 184-396 (397)
4 PLN02282 phosphoglycerate kina 100.0 3.8E-62 8.3E-67 486.8 15.5 210 2-214 187-400 (401)
5 PRK00073 pgk phosphoglycerate 100.0 3.4E-61 7.5E-66 478.9 16.0 206 2-213 180-388 (389)
6 PTZ00005 phosphoglycerate kina 100.0 9.8E-61 2.1E-65 478.8 17.1 210 2-214 201-416 (417)
7 KOG1367 3-phosphoglycerate kin 100.0 4.7E-61 1E-65 452.2 13.9 210 2-214 199-414 (416)
8 PRK13962 bifunctional phosphog 100.0 1.5E-58 3.3E-63 485.9 16.1 218 2-225 183-408 (645)
9 PF00162 PGK: Phosphoglycerate 100.0 9.3E-58 2E-62 455.5 12.6 197 2-204 184-384 (384)
10 COG0220 Predicted S-adenosylme 100.0 3.8E-39 8.2E-44 302.4 19.8 206 199-413 8-226 (227)
11 PF02390 Methyltransf_4: Putat 100.0 2.6E-38 5.6E-43 291.9 18.8 184 219-412 7-195 (195)
12 TIGR00091 tRNA (guanine-N(7)-) 100.0 3.4E-32 7.4E-37 251.2 21.1 184 218-412 5-193 (194)
13 PRK14121 tRNA (guanine-N(7)-)- 100.0 8.8E-31 1.9E-35 262.0 21.2 170 225-413 117-290 (390)
14 PRK01544 bifunctional N5-gluta 100.0 1.7E-30 3.7E-35 271.6 18.1 257 111-397 237-505 (506)
15 PRK00121 trmB tRNA (guanine-N( 99.9 5.1E-24 1.1E-28 197.9 18.7 169 217-399 28-201 (202)
16 KOG3115 Methyltransferase-like 99.8 1.6E-18 3.5E-23 156.1 9.0 189 217-414 42-246 (249)
17 COG2226 UbiE Methylase involve 99.6 4.5E-15 9.8E-20 140.2 11.2 101 230-343 51-155 (238)
18 PF01209 Ubie_methyltran: ubiE 99.5 9.7E-14 2.1E-18 131.7 9.9 101 230-343 47-152 (233)
19 PF08241 Methyltransf_11: Meth 99.5 1.2E-13 2.7E-18 110.7 8.7 94 235-342 1-95 (95)
20 PRK00107 gidB 16S rRNA methylt 99.4 1.2E-12 2.6E-17 120.2 13.6 115 231-364 46-164 (187)
21 PF12847 Methyltransf_18: Meth 99.4 4E-13 8.6E-18 112.0 9.6 104 231-344 2-111 (112)
22 PLN02233 ubiquinone biosynthes 99.4 7.1E-13 1.5E-17 128.0 12.7 101 230-343 73-181 (261)
23 PF13847 Methyltransf_31: Meth 99.4 1.4E-12 2.9E-17 115.5 12.8 105 230-346 3-112 (152)
24 PRK14103 trans-aconitate 2-met 99.4 2.1E-12 4.5E-17 124.2 14.4 98 230-344 29-126 (255)
25 PRK01683 trans-aconitate 2-met 99.4 3.9E-12 8.4E-17 122.2 11.5 100 230-344 31-130 (258)
26 PRK08287 cobalt-precorrin-6Y C 99.4 1.7E-11 3.8E-16 112.2 15.0 118 230-365 31-152 (187)
27 PLN02244 tocopherol O-methyltr 99.3 5.8E-12 1.3E-16 126.2 12.2 101 230-344 118-223 (340)
28 PF05175 MTS: Methyltransferas 99.3 8.1E-12 1.7E-16 112.9 11.9 106 231-345 32-141 (170)
29 TIGR02752 MenG_heptapren 2-hep 99.3 8.8E-12 1.9E-16 117.6 12.6 102 230-344 45-151 (231)
30 TIGR02072 BioC biotin biosynth 99.3 9.9E-12 2.2E-16 116.9 12.4 102 231-345 35-136 (240)
31 PRK11088 rrmA 23S rRNA methylt 99.3 6E-12 1.3E-16 122.2 11.2 107 230-357 85-194 (272)
32 PRK15451 tRNA cmo(5)U34 methyl 99.3 5.1E-12 1.1E-16 121.0 9.9 131 197-344 27-164 (247)
33 TIGR00138 gidB 16S rRNA methyl 99.3 1.9E-11 4.1E-16 111.7 13.1 110 231-359 43-156 (181)
34 TIGR00537 hemK_rel_arch HemK-r 99.3 2.6E-11 5.5E-16 110.3 13.8 124 231-366 20-162 (179)
35 PRK10258 biotin biosynthesis p 99.3 9.6E-12 2.1E-16 119.1 11.4 101 230-346 42-142 (251)
36 TIGR00740 methyltransferase, p 99.3 1.1E-11 2.4E-16 118.0 11.4 101 230-343 53-160 (239)
37 TIGR03534 RF_mod_PrmC protein- 99.3 5.4E-11 1.2E-15 113.3 15.7 128 231-367 88-239 (251)
38 TIGR02469 CbiT precorrin-6Y C5 99.3 3.3E-11 7.1E-16 101.7 12.0 98 231-343 20-121 (124)
39 PRK07402 precorrin-6B methylas 99.3 1E-10 2.2E-15 108.0 16.1 116 230-361 40-159 (196)
40 PLN02396 hexaprenyldihydroxybe 99.3 1.5E-11 3.3E-16 121.9 11.2 104 231-349 132-240 (322)
41 PF13659 Methyltransf_26: Meth 99.3 3E-11 6.5E-16 101.5 11.4 107 232-344 2-115 (117)
42 COG4123 Predicted O-methyltran 99.3 5.6E-11 1.2E-15 112.7 14.4 131 231-367 45-192 (248)
43 PRK04266 fibrillarin; Provisio 99.3 6.3E-11 1.4E-15 112.0 14.0 124 230-365 72-206 (226)
44 COG4106 Tam Trans-aconitate me 99.3 1.5E-11 3.2E-16 112.7 9.0 138 199-362 10-150 (257)
45 PF13649 Methyltransf_25: Meth 99.3 7.7E-12 1.7E-16 102.9 6.5 94 234-338 1-101 (101)
46 TIGR03533 L3_gln_methyl protei 99.3 1E-10 2.3E-15 114.3 15.5 125 231-365 122-270 (284)
47 COG2242 CobL Precorrin-6B meth 99.3 1.7E-10 3.8E-15 104.2 15.0 117 230-363 34-154 (187)
48 PLN02490 MPBQ/MSBQ methyltrans 99.3 6.8E-11 1.5E-15 117.8 13.4 122 231-365 114-252 (340)
49 PRK15001 SAM-dependent 23S rib 99.2 8.8E-11 1.9E-15 118.6 14.1 118 231-357 229-354 (378)
50 COG2227 UbiG 2-polyprenyl-3-me 99.2 3.2E-11 6.9E-16 112.8 9.9 108 230-357 59-174 (243)
51 PRK00377 cbiT cobalt-precorrin 99.2 1.7E-10 3.7E-15 106.7 14.7 119 230-363 40-164 (198)
52 PRK11036 putative S-adenosyl-L 99.2 9E-11 2E-15 112.8 13.0 101 230-344 44-149 (255)
53 PRK11207 tellurite resistance 99.2 6.9E-11 1.5E-15 109.4 11.3 100 230-343 30-133 (197)
54 TIGR03704 PrmC_rel_meth putati 99.2 1.4E-10 3.1E-15 111.3 13.7 129 231-365 87-236 (251)
55 PTZ00098 phosphoethanolamine N 99.2 8.4E-11 1.8E-15 113.7 10.6 102 230-343 52-155 (263)
56 PRK11873 arsM arsenite S-adeno 99.2 2.1E-10 4.6E-15 111.1 13.3 101 230-343 77-182 (272)
57 PF08242 Methyltransf_12: Meth 99.2 5.4E-12 1.2E-16 103.2 1.5 95 235-340 1-99 (99)
58 PRK11805 N5-glutamine S-adenos 99.2 4.5E-10 9.8E-15 111.0 15.3 123 232-364 135-281 (307)
59 TIGR00452 methyltransferase, p 99.2 5.8E-10 1.3E-14 110.2 15.4 100 230-344 121-225 (314)
60 PRK15068 tRNA mo(5)U34 methylt 99.2 1.2E-10 2.5E-15 115.9 10.5 100 230-344 122-226 (322)
61 PRK14966 unknown domain/N5-glu 99.2 7E-10 1.5E-14 112.6 16.2 132 231-370 252-406 (423)
62 KOG1271 Methyltransferases [Ge 99.2 1.6E-10 3.5E-15 103.2 9.7 123 230-364 67-200 (227)
63 TIGR00536 hemK_fam HemK family 99.2 7.2E-10 1.6E-14 108.4 15.1 123 232-363 116-263 (284)
64 PRK05785 hypothetical protein; 99.2 3.2E-10 6.9E-15 107.3 12.1 94 231-342 52-146 (226)
65 PF02353 CMAS: Mycolic acid cy 99.2 1.7E-10 3.7E-15 112.0 10.3 100 230-344 62-166 (273)
66 PRK08317 hypothetical protein; 99.1 3.2E-10 7E-15 106.5 12.0 101 230-343 19-123 (241)
67 KOG1540 Ubiquinone biosynthesi 99.1 3.6E-10 7.8E-15 106.0 11.9 101 230-343 100-213 (296)
68 COG2813 RsmC 16S RNA G1207 met 99.1 3.8E-10 8.3E-15 109.2 12.5 124 225-358 153-281 (300)
69 TIGR00477 tehB tellurite resis 99.1 3.4E-10 7.3E-15 104.6 11.3 98 231-343 31-132 (195)
70 TIGR00080 pimt protein-L-isoas 99.1 3.2E-10 7E-15 106.3 11.3 96 230-344 77-177 (215)
71 COG2230 Cfa Cyclopropane fatty 99.1 2.5E-10 5.5E-15 110.1 10.7 100 230-344 72-176 (283)
72 PRK11188 rrmJ 23S rRNA methylt 99.1 3.3E-10 7.2E-15 105.9 11.2 108 230-344 51-165 (209)
73 PRK09328 N5-glutamine S-adenos 99.1 1.2E-09 2.6E-14 105.7 15.4 125 230-363 108-256 (275)
74 COG2519 GCD14 tRNA(1-methylade 99.1 8.8E-10 1.9E-14 103.9 13.4 116 230-364 94-215 (256)
75 PRK06922 hypothetical protein; 99.1 2.7E-10 5.9E-15 120.6 10.9 110 231-343 419-536 (677)
76 COG2890 HemK Methylase of poly 99.1 1E-09 2.3E-14 106.9 14.3 120 233-362 113-255 (280)
77 PLN02336 phosphoethanolamine N 99.1 4E-10 8.7E-15 117.8 11.9 100 230-343 266-368 (475)
78 PRK14968 putative methyltransf 99.1 1.6E-09 3.6E-14 98.4 14.3 125 230-364 23-168 (188)
79 PRK14967 putative methyltransf 99.1 1.9E-09 4E-14 101.7 14.6 124 231-364 37-179 (223)
80 smart00828 PKS_MT Methyltransf 99.1 4.6E-10 9.9E-15 105.4 10.0 119 233-365 2-140 (224)
81 PRK01544 bifunctional N5-gluta 99.1 1.8E-09 4E-14 113.5 14.9 131 231-370 139-294 (506)
82 PRK01581 speE spermidine synth 99.1 2.8E-09 6.1E-14 106.3 15.3 127 230-363 150-291 (374)
83 PRK13942 protein-L-isoaspartat 99.1 1.1E-09 2.4E-14 102.5 11.5 96 230-344 76-176 (212)
84 PRK09489 rsmC 16S ribosomal RN 99.1 1.6E-09 3.5E-14 108.5 13.3 116 231-357 197-317 (342)
85 PHA03411 putative methyltransf 99.1 1.9E-09 4E-14 103.8 13.2 124 231-363 65-208 (279)
86 TIGR00438 rrmJ cell division p 99.1 1E-09 2.2E-14 100.6 11.0 120 230-359 32-161 (188)
87 TIGR01177 conserved hypothetic 99.1 1.2E-09 2.7E-14 108.9 12.4 121 230-362 182-309 (329)
88 PF13489 Methyltransf_23: Meth 99.1 3.8E-10 8.2E-15 99.5 7.8 97 230-347 22-118 (161)
89 PRK13944 protein-L-isoaspartat 99.1 1.6E-09 3.4E-14 100.9 11.9 96 230-344 72-173 (205)
90 PRK00811 spermidine synthase; 99.0 2.5E-09 5.3E-14 104.6 13.5 123 230-360 76-211 (283)
91 PRK04457 spermidine synthase; 99.0 4.1E-09 8.8E-14 101.9 14.7 122 230-359 66-193 (262)
92 TIGR01934 MenG_MenH_UbiE ubiqu 99.0 1.9E-09 4.2E-14 100.4 11.7 101 230-343 39-142 (223)
93 PRK12335 tellurite resistance 99.0 1.3E-09 2.8E-14 106.7 11.1 98 231-343 121-222 (287)
94 PLN03075 nicotianamine synthas 99.0 1.1E-09 2.3E-14 106.8 10.1 103 230-344 123-233 (296)
95 TIGR03840 TMPT_Se_Te thiopurin 99.0 9E-10 2E-14 103.2 9.2 102 230-343 34-151 (213)
96 TIGR02716 C20_methyl_CrtF C-20 99.0 2E-09 4.4E-14 106.2 12.0 100 230-343 149-253 (306)
97 PRK03612 spermidine synthase; 99.0 4.4E-09 9.6E-14 111.1 15.0 125 230-362 297-437 (521)
98 PF08704 GCD14: tRNA methyltra 99.0 5.3E-09 1.2E-13 99.8 13.7 120 230-365 40-167 (247)
99 PRK00216 ubiE ubiquinone/menaq 99.0 3.3E-09 7.3E-14 99.8 12.0 100 231-343 52-157 (239)
100 PRK13255 thiopurine S-methyltr 99.0 2.2E-09 4.8E-14 100.9 10.5 96 230-342 37-153 (218)
101 TIGR03587 Pse_Me-ase pseudamin 99.0 2.7E-09 5.9E-14 99.4 10.9 97 231-342 44-140 (204)
102 TIGR00406 prmA ribosomal prote 99.0 1.1E-08 2.3E-13 100.4 15.3 115 230-364 159-278 (288)
103 smart00138 MeTrc Methyltransfe 99.0 1.3E-09 2.8E-14 105.6 8.0 102 231-343 100-241 (264)
104 PTZ00146 fibrillarin; Provisio 99.0 1.3E-08 2.9E-13 98.9 14.9 124 230-365 132-267 (293)
105 PRK00517 prmA ribosomal protei 99.0 9.1E-09 2E-13 98.8 13.6 111 230-365 119-234 (250)
106 PLN02336 phosphoethanolamine N 98.9 3.1E-09 6.8E-14 111.1 10.2 103 230-343 37-141 (475)
107 PF07021 MetW: Methionine bios 98.9 1.3E-08 2.8E-13 92.7 12.7 153 230-411 13-169 (193)
108 KOG1270 Methyltransferases [Co 98.9 9E-10 1.9E-14 103.9 5.3 105 231-353 90-204 (282)
109 PLN02366 spermidine synthase 98.9 1.6E-08 3.6E-13 99.7 14.4 124 230-360 91-226 (308)
110 COG2264 PrmA Ribosomal protein 98.9 4.6E-09 1E-13 102.2 10.3 127 219-365 152-284 (300)
111 TIGR03438 probable methyltrans 98.9 6E-09 1.3E-13 102.7 11.4 109 231-346 64-179 (301)
112 KOG1541 Predicted protein carb 98.9 4.9E-09 1.1E-13 96.5 9.7 124 230-362 50-180 (270)
113 PRK11705 cyclopropane fatty ac 98.9 5.8E-09 1.3E-13 106.1 11.3 100 230-344 167-267 (383)
114 PRK15128 23S rRNA m(5)C1962 me 98.9 5.4E-08 1.2E-12 99.4 18.0 130 231-364 221-364 (396)
115 PRK14901 16S rRNA methyltransf 98.9 1.2E-08 2.7E-13 105.5 13.3 114 230-344 252-384 (434)
116 cd02440 AdoMet_MTases S-adenos 98.9 1.4E-08 3.1E-13 80.9 10.8 99 233-343 1-103 (107)
117 PRK14902 16S rRNA methyltransf 98.9 9.7E-09 2.1E-13 106.6 12.1 111 230-344 250-379 (444)
118 PF05401 NodS: Nodulation prot 98.9 5.1E-09 1.1E-13 95.6 8.6 106 226-344 39-146 (201)
119 KOG4300 Predicted methyltransf 98.9 6.1E-09 1.3E-13 95.0 8.7 101 230-343 76-181 (252)
120 PF03848 TehB: Tellurite resis 98.9 1.2E-08 2.6E-13 93.7 10.8 99 230-343 30-132 (192)
121 TIGR00446 nop2p NOL1/NOP2/sun 98.9 1.7E-08 3.6E-13 97.8 12.4 111 230-345 71-200 (264)
122 TIGR00417 speE spermidine synt 98.9 2.6E-08 5.5E-13 96.8 13.7 123 230-360 72-206 (270)
123 PRK10901 16S rRNA methyltransf 98.9 1.8E-08 4E-13 104.0 13.0 111 230-344 244-372 (427)
124 PRK00312 pcm protein-L-isoaspa 98.9 1.9E-08 4E-13 94.0 11.8 95 230-345 78-176 (212)
125 PLN02781 Probable caffeoyl-CoA 98.8 2.9E-08 6.3E-13 94.4 12.4 101 231-342 69-176 (234)
126 PRK06202 hypothetical protein; 98.8 1.2E-08 2.7E-13 96.5 9.8 100 230-342 60-164 (232)
127 PRK13943 protein-L-isoaspartat 98.8 3E-08 6.5E-13 98.4 12.4 97 230-345 80-181 (322)
128 PLN02672 methionine S-methyltr 98.8 9.2E-08 2E-12 107.3 17.2 128 231-365 119-299 (1082)
129 PRK14903 16S rRNA methyltransf 98.8 3.5E-08 7.7E-13 101.9 12.9 112 230-345 237-367 (431)
130 TIGR01983 UbiG ubiquinone bios 98.8 7.2E-08 1.6E-12 90.4 13.9 104 231-348 46-153 (224)
131 PRK13168 rumA 23S rRNA m(5)U19 98.8 5.2E-08 1.1E-12 101.1 13.9 122 230-367 297-422 (443)
132 PRK14904 16S rRNA methyltransf 98.8 4.4E-08 9.6E-13 101.7 12.9 110 230-345 250-378 (445)
133 COG2518 Pcm Protein-L-isoaspar 98.8 3.2E-08 7E-13 91.4 9.8 94 230-344 72-169 (209)
134 PF01596 Methyltransf_3: O-met 98.8 8.2E-08 1.8E-12 89.4 11.9 102 230-342 45-153 (205)
135 PF01135 PCMT: Protein-L-isoas 98.8 2.8E-08 6.1E-13 92.8 8.8 96 230-344 72-172 (209)
136 PHA03412 putative methyltransf 98.7 6E-08 1.3E-12 91.5 10.5 100 231-339 50-158 (241)
137 KOG2361 Predicted methyltransf 98.7 1.4E-08 3.1E-13 94.8 5.9 107 233-349 74-187 (264)
138 PRK10909 rsmD 16S rRNA m(2)G96 98.7 1.3E-07 2.9E-12 87.6 12.4 102 231-346 54-161 (199)
139 COG4122 Predicted O-methyltran 98.7 1.5E-07 3.2E-12 88.1 12.4 99 230-342 59-164 (219)
140 PF06325 PrmA: Ribosomal prote 98.7 6.1E-08 1.3E-12 95.0 10.2 116 230-366 161-280 (295)
141 TIGR00479 rumA 23S rRNA (uraci 98.7 2.2E-07 4.9E-12 96.1 15.0 121 231-366 293-417 (431)
142 TIGR02081 metW methionine bios 98.7 2.7E-07 5.8E-12 85.0 13.9 153 231-410 14-168 (194)
143 PRK11783 rlmL 23S rRNA m(2)G24 98.7 1.5E-07 3.2E-12 103.0 14.2 129 231-367 539-678 (702)
144 TIGR02021 BchM-ChlM magnesium 98.7 8E-08 1.7E-12 90.1 10.2 98 230-343 55-157 (219)
145 PRK03522 rumB 23S rRNA methylu 98.7 2.5E-07 5.4E-12 91.9 13.8 115 231-365 174-292 (315)
146 PLN02476 O-methyltransferase 98.7 2.3E-07 5E-12 90.0 13.0 102 230-342 118-226 (278)
147 PF08003 Methyltransf_9: Prote 98.7 2.3E-07 4.9E-12 90.1 11.9 98 230-344 115-219 (315)
148 TIGR02085 meth_trns_rumB 23S r 98.7 4.8E-07 1.1E-11 91.9 14.9 117 231-367 234-354 (374)
149 TIGR00563 rsmB ribosomal RNA s 98.6 2.6E-07 5.6E-12 95.5 12.7 112 230-344 238-368 (426)
150 KOG3191 Predicted N6-DNA-methy 98.6 3.9E-07 8.4E-12 81.8 11.8 126 230-364 43-188 (209)
151 smart00650 rADc Ribosomal RNA 98.6 2.5E-07 5.5E-12 83.3 10.5 98 230-345 13-114 (169)
152 PRK05134 bifunctional 3-demeth 98.6 4.6E-07 1E-11 85.6 12.7 100 231-345 49-152 (233)
153 KOG3010 Methyltransferase [Gen 98.6 3.5E-08 7.5E-13 92.2 4.7 99 231-342 34-135 (261)
154 PRK13256 thiopurine S-methyltr 98.6 1.3E-07 2.9E-12 89.1 8.6 102 230-344 43-163 (226)
155 COG2263 Predicted RNA methylas 98.6 1E-06 2.2E-11 79.9 12.6 114 230-364 45-163 (198)
156 PRK07580 Mg-protoporphyrin IX 98.6 4.2E-07 9.1E-12 85.4 10.7 96 230-341 63-163 (230)
157 PLN02585 magnesium protoporphy 98.6 1.2E-06 2.6E-11 86.8 14.2 67 230-306 144-219 (315)
158 PLN02589 caffeoyl-CoA O-methyl 98.6 9.3E-07 2E-11 84.6 12.7 102 230-342 79-188 (247)
159 PLN02823 spermine synthase 98.5 1.7E-06 3.6E-11 86.5 14.6 125 230-360 103-242 (336)
160 PRK11727 23S rRNA mA1618 methy 98.5 3.2E-06 6.9E-11 83.8 15.9 130 230-365 114-265 (321)
161 KOG2904 Predicted methyltransf 98.5 1.3E-06 2.9E-11 83.1 11.9 125 231-357 149-298 (328)
162 PF03291 Pox_MCEL: mRNA cappin 98.5 5E-07 1.1E-11 90.1 9.4 115 230-349 62-191 (331)
163 PRK05031 tRNA (uracil-5-)-meth 98.5 2.6E-06 5.6E-11 86.2 14.5 118 232-366 208-340 (362)
164 KOG2899 Predicted methyltransf 98.4 1.1E-06 2.4E-11 82.2 9.8 119 231-351 59-217 (288)
165 TIGR00095 RNA methyltransferas 98.4 4.3E-06 9.3E-11 77.0 12.9 105 230-346 49-161 (189)
166 KOG1975 mRNA cap methyltransfe 98.4 1.8E-06 3.8E-11 83.9 10.6 123 230-357 117-250 (389)
167 TIGR02143 trmA_only tRNA (urac 98.4 5E-06 1.1E-10 83.9 14.4 111 232-357 199-324 (353)
168 PF00891 Methyltransf_2: O-met 98.4 1.4E-06 3E-11 82.9 9.4 96 230-343 100-198 (241)
169 PF01170 UPF0020: Putative RNA 98.4 3.3E-06 7.1E-11 77.1 11.4 111 231-349 29-155 (179)
170 PF05724 TPMT: Thiopurine S-me 98.4 6.7E-07 1.5E-11 84.1 7.0 99 230-343 37-154 (218)
171 PRK04338 N(2),N(2)-dimethylgua 98.3 4.8E-06 1E-10 84.8 12.3 101 232-349 59-164 (382)
172 KOG1499 Protein arginine N-met 98.3 2.8E-06 6.2E-11 83.7 9.1 100 231-341 61-164 (346)
173 COG2521 Predicted archaeal met 98.3 3.3E-06 7.2E-11 78.7 8.9 125 230-363 134-271 (287)
174 COG4976 Predicted methyltransf 98.3 3E-07 6.6E-12 85.3 1.9 100 231-344 126-225 (287)
175 PF02475 Met_10: Met-10+ like- 98.3 3.6E-06 7.8E-11 78.1 8.6 95 230-342 101-200 (200)
176 PF01564 Spermine_synth: Sperm 98.2 1.5E-05 3.3E-10 76.3 12.1 123 230-360 76-211 (246)
177 PLN02232 ubiquinone biosynthes 98.2 2.9E-06 6.4E-11 75.9 6.7 73 258-343 1-80 (160)
178 PF02527 GidB: rRNA small subu 98.2 2.1E-05 4.5E-10 72.1 12.3 93 233-343 51-147 (184)
179 KOG2915 tRNA(1-methyladenosine 98.2 2.6E-05 5.6E-10 74.4 12.4 122 230-367 105-233 (314)
180 COG1092 Predicted SAM-dependen 98.1 6.8E-05 1.5E-09 76.2 15.8 113 231-346 218-338 (393)
181 PRK11933 yebU rRNA (cytosine-C 98.1 1.6E-05 3.5E-10 82.8 11.5 112 230-345 113-243 (470)
182 PF05219 DREV: DREV methyltran 98.1 2.9E-05 6.2E-10 74.0 12.1 122 231-372 95-243 (265)
183 PF06080 DUF938: Protein of un 98.1 8.3E-06 1.8E-10 75.4 8.1 110 223-342 19-139 (204)
184 COG2265 TrmA SAM-dependent met 98.1 3.8E-05 8.2E-10 79.3 13.1 117 231-363 294-414 (432)
185 TIGR00755 ksgA dimethyladenosi 98.1 2.6E-05 5.7E-10 74.9 10.9 70 230-308 29-103 (253)
186 PRK00274 ksgA 16S ribosomal RN 98.1 1E-05 2.2E-10 78.7 7.7 71 230-307 42-113 (272)
187 PF10294 Methyltransf_16: Puta 98.1 3E-05 6.5E-10 70.3 10.2 105 230-344 45-156 (173)
188 PRK14896 ksgA 16S ribosomal RN 98.1 1.3E-05 2.9E-10 77.3 8.2 70 230-308 29-100 (258)
189 COG0421 SpeE Spermidine syntha 98.0 6.5E-05 1.4E-09 73.3 12.7 115 228-350 74-196 (282)
190 TIGR00478 tly hemolysin TlyA f 98.0 3.2E-05 7E-10 73.2 10.2 147 230-414 75-222 (228)
191 PF05148 Methyltransf_8: Hypot 98.0 1.2E-05 2.6E-10 74.2 6.3 108 230-365 72-181 (219)
192 TIGR00308 TRM1 tRNA(guanine-26 98.0 7.6E-05 1.6E-09 75.7 12.0 102 232-349 46-153 (374)
193 PTZ00338 dimethyladenosine tra 97.9 3.6E-05 7.8E-10 75.7 8.8 72 230-310 36-112 (294)
194 PF09445 Methyltransf_15: RNA 97.9 2.4E-05 5.2E-10 70.1 6.9 73 233-312 2-80 (163)
195 KOG3045 Predicted RNA methylas 97.9 4.2E-05 9E-10 72.5 8.3 102 229-364 179-286 (325)
196 PF13578 Methyltransf_24: Meth 97.9 1.7E-05 3.7E-10 65.5 4.7 96 235-342 1-103 (106)
197 PF03141 Methyltransf_29: Puta 97.9 9.4E-06 2E-10 83.5 3.3 97 230-344 117-219 (506)
198 PRK04148 hypothetical protein; 97.8 8.7E-05 1.9E-09 64.3 8.7 72 230-310 16-88 (134)
199 KOG1663 O-methyltransferase [S 97.8 0.00026 5.6E-09 66.2 11.9 102 230-342 73-181 (237)
200 COG1041 Predicted DNA modifica 97.8 0.00012 2.6E-09 72.7 10.3 119 231-364 198-325 (347)
201 KOG2187 tRNA uracil-5-methyltr 97.8 8.1E-05 1.8E-09 76.7 9.2 115 230-355 383-501 (534)
202 PF10672 Methyltrans_SAM: S-ad 97.8 0.00021 4.6E-09 69.8 11.2 112 230-346 123-240 (286)
203 PF03602 Cons_hypoth95: Conser 97.8 0.00017 3.8E-09 66.0 9.7 140 194-347 9-156 (183)
204 PF12147 Methyltransf_20: Puta 97.7 0.00046 1E-08 66.8 12.6 119 230-360 135-266 (311)
205 PF05958 tRNA_U5-meth_tr: tRNA 97.7 0.00032 7E-09 70.7 11.4 117 232-365 198-329 (352)
206 COG0144 Sun tRNA and rRNA cyto 97.7 0.00045 9.7E-09 69.8 12.3 113 230-344 156-288 (355)
207 PRK11783 rlmL 23S rRNA m(2)G24 97.7 0.00028 6.2E-09 77.5 11.6 116 231-352 191-355 (702)
208 PF01728 FtsJ: FtsJ-like methy 97.6 8.9E-05 1.9E-09 67.3 5.9 107 230-344 23-139 (181)
209 COG0357 GidB Predicted S-adeno 97.6 0.0005 1.1E-08 64.4 10.9 115 231-363 68-189 (215)
210 PF05185 PRMT5: PRMT5 arginine 97.6 0.00019 4.2E-09 74.5 8.9 99 231-341 187-294 (448)
211 KOG1500 Protein arginine N-met 97.6 0.00029 6.3E-09 69.0 9.3 96 230-341 177-279 (517)
212 KOG3420 Predicted RNA methylas 97.6 0.00012 2.5E-09 63.8 5.3 74 226-306 44-121 (185)
213 PRK00050 16S rRNA m(4)C1402 me 97.6 0.00027 5.8E-09 69.4 8.6 76 230-306 19-97 (296)
214 KOG1331 Predicted methyltransf 97.6 3.9E-05 8.6E-10 73.7 2.4 96 231-342 46-141 (293)
215 COG3963 Phospholipid N-methylt 97.6 0.0006 1.3E-08 60.8 9.6 126 205-344 29-156 (194)
216 COG0500 SmtA SAM-dependent met 97.5 0.0015 3.3E-08 54.2 11.2 100 234-346 52-157 (257)
217 PF02384 N6_Mtase: N-6 DNA Met 97.5 0.00025 5.4E-09 70.0 7.3 126 230-360 46-204 (311)
218 TIGR02987 met_A_Alw26 type II 97.5 0.00056 1.2E-08 72.7 10.3 81 231-313 32-124 (524)
219 KOG1661 Protein-L-isoaspartate 97.5 0.00063 1.4E-08 62.8 8.8 95 231-344 83-193 (237)
220 COG0742 N6-adenine-specific me 97.5 0.002 4.2E-08 58.9 11.9 107 230-347 43-157 (187)
221 PRK10611 chemotaxis methyltran 97.4 0.00021 4.5E-09 70.0 5.9 103 231-343 116-261 (287)
222 PF01189 Nol1_Nop2_Fmu: NOL1/N 97.4 0.0016 3.5E-08 63.7 12.1 112 230-344 85-219 (283)
223 TIGR01444 fkbM_fam methyltrans 97.4 0.00041 8.9E-09 60.1 6.8 55 233-287 1-59 (143)
224 TIGR03439 methyl_EasF probable 97.4 0.0016 3.4E-08 64.8 11.6 110 231-346 77-199 (319)
225 PF05891 Methyltransf_PK: AdoM 97.4 0.00055 1.2E-08 63.8 7.7 102 230-343 55-160 (218)
226 COG0030 KsgA Dimethyladenosine 97.4 0.00053 1.2E-08 65.9 7.6 71 231-308 31-104 (259)
227 KOG2940 Predicted methyltransf 97.4 0.00028 6.1E-09 65.8 5.4 100 230-343 72-173 (325)
228 COG2520 Predicted methyltransf 97.2 0.002 4.4E-08 64.3 10.1 97 230-344 188-289 (341)
229 COG0293 FtsJ 23S rRNA methylas 97.2 0.0041 8.9E-08 57.7 11.4 102 230-344 45-159 (205)
230 COG0116 Predicted N6-adenine-s 97.2 0.003 6.5E-08 63.7 10.9 138 197-347 160-347 (381)
231 PF01739 CheR: CheR methyltran 97.2 0.00038 8.3E-09 64.4 4.2 102 231-343 32-174 (196)
232 PRK00536 speE spermidine synth 97.1 0.005 1.1E-07 59.5 11.4 109 228-359 70-190 (262)
233 PF10354 DUF2431: Domain of un 97.1 0.0031 6.7E-08 56.9 9.3 126 237-363 3-146 (166)
234 PF04816 DUF633: Family of unk 97.0 0.0066 1.4E-07 56.6 10.9 114 234-365 1-120 (205)
235 PF08123 DOT1: Histone methyla 96.9 0.0038 8.2E-08 58.2 8.4 100 230-342 42-156 (205)
236 COG1352 CheR Methylase of chem 96.9 0.004 8.7E-08 60.3 8.4 102 231-343 97-240 (268)
237 PRK01747 mnmC bifunctional tRN 96.9 0.011 2.4E-07 64.7 12.7 122 231-365 58-223 (662)
238 KOG1709 Guanidinoacetate methy 96.8 0.005 1.1E-07 57.2 7.9 102 230-343 101-205 (271)
239 PF13679 Methyltransf_32: Meth 96.8 0.0027 5.8E-08 55.5 5.9 59 230-288 25-94 (141)
240 COG4262 Predicted spermidine s 96.7 0.021 4.6E-07 56.9 11.8 128 230-365 289-432 (508)
241 COG1189 Predicted rRNA methyla 96.5 0.01 2.2E-07 56.0 8.0 151 230-414 79-229 (245)
242 KOG2730 Methylase [General fun 96.5 0.0028 6.2E-08 58.9 4.1 78 230-312 94-176 (263)
243 PF01269 Fibrillarin: Fibrilla 96.5 0.087 1.9E-06 49.5 13.8 124 230-365 73-208 (229)
244 KOG1269 SAM-dependent methyltr 96.4 0.0033 7.2E-08 63.5 4.5 99 231-343 111-214 (364)
245 KOG4589 Cell division protein 96.1 0.074 1.6E-06 48.5 11.0 121 231-359 70-203 (232)
246 COG1889 NOP1 Fibrillarin-like 96.1 0.14 3.1E-06 47.3 12.8 125 230-366 76-211 (231)
247 KOG0820 Ribosomal RNA adenine 96.1 0.02 4.4E-07 55.0 7.5 107 230-347 58-180 (315)
248 KOG3178 Hydroxyindole-O-methyl 96.0 0.036 7.7E-07 55.2 9.2 96 231-343 178-274 (342)
249 PF00398 RrnaAD: Ribosomal RNA 96.0 0.084 1.8E-06 51.0 11.8 75 230-308 30-106 (262)
250 PF05971 Methyltransf_10: Prot 96.0 0.02 4.3E-07 56.3 7.1 81 231-314 103-190 (299)
251 PF06962 rRNA_methylase: Putat 95.8 0.072 1.6E-06 46.5 9.2 84 256-344 1-92 (140)
252 PRK10742 putative methyltransf 95.8 0.18 3.9E-06 48.3 12.4 70 231-306 89-171 (250)
253 PRK11760 putative 23S rRNA C24 95.7 0.05 1.1E-06 54.3 8.8 86 230-337 211-296 (357)
254 KOG1122 tRNA and rRNA cytosine 95.6 0.16 3.5E-06 51.7 11.8 112 230-344 241-371 (460)
255 KOG3987 Uncharacterized conser 95.5 0.0049 1.1E-07 56.9 0.9 93 230-343 112-206 (288)
256 TIGR00006 S-adenosyl-methyltra 95.1 0.12 2.5E-06 51.2 9.0 76 230-306 20-99 (305)
257 PF04672 Methyltransf_19: S-ad 95.1 0.079 1.7E-06 51.2 7.6 122 231-361 69-211 (267)
258 PRK13699 putative methylase; P 95.0 0.099 2.2E-06 49.5 8.2 81 278-364 2-91 (227)
259 COG2384 Predicted SAM-dependen 95.0 0.39 8.5E-06 45.0 11.7 118 231-365 17-139 (226)
260 PF07942 N2227: N2227-like pro 95.0 0.12 2.7E-06 50.1 8.7 123 230-365 56-238 (270)
261 PF04989 CmcI: Cephalosporin h 94.8 0.12 2.5E-06 48.2 7.8 104 230-342 32-145 (206)
262 KOG3201 Uncharacterized conser 94.6 0.032 7E-07 49.7 3.3 122 231-363 30-160 (201)
263 PF03059 NAS: Nicotianamine sy 94.6 0.22 4.7E-06 48.5 9.4 103 231-345 121-231 (276)
264 KOG2352 Predicted spermine/spe 94.4 0.2 4.3E-06 52.0 9.0 100 233-345 51-162 (482)
265 COG4076 Predicted RNA methylas 94.3 0.076 1.6E-06 48.5 5.1 96 231-342 33-133 (252)
266 PRK11524 putative methyltransf 94.1 0.21 4.6E-06 48.8 8.4 81 276-363 7-97 (284)
267 PF01861 DUF43: Protein of unk 94.1 0.98 2.1E-05 43.0 12.3 124 230-367 44-176 (243)
268 KOG1562 Spermidine synthase [A 94.0 0.71 1.5E-05 45.2 11.4 123 228-358 119-250 (337)
269 PF04445 SAM_MT: Putative SAM- 94.0 0.12 2.7E-06 49.0 6.1 75 231-314 76-163 (234)
270 PF11968 DUF3321: Putative met 93.7 0.31 6.8E-06 45.6 8.1 108 231-365 52-177 (219)
271 PF02005 TRM: N2,N2-dimethylgu 93.2 0.58 1.3E-05 47.7 9.8 116 231-362 50-174 (377)
272 PF07757 AdoMet_MTase: Predict 93.0 0.083 1.8E-06 43.9 2.8 39 222-262 50-88 (112)
273 PF07091 FmrO: Ribosomal RNA m 92.9 0.33 7.3E-06 46.4 7.1 69 231-306 106-178 (251)
274 COG4798 Predicted methyltransf 92.9 0.52 1.1E-05 43.4 8.0 105 230-343 48-165 (238)
275 PF05430 Methyltransf_30: S-ad 92.9 0.31 6.6E-06 41.8 6.2 76 277-365 32-107 (124)
276 PLN02668 indole-3-acetate carb 92.9 0.54 1.2E-05 48.0 9.0 112 231-344 64-237 (386)
277 PF03141 Methyltransf_29: Puta 92.4 0.41 8.8E-06 50.0 7.5 119 230-365 365-487 (506)
278 PF02254 TrkA_N: TrkA-N domain 92.3 2.2 4.8E-05 35.1 10.7 98 239-351 4-103 (116)
279 PF12692 Methyltransf_17: S-ad 91.9 0.48 1E-05 41.7 6.2 104 231-342 29-132 (160)
280 PF00107 ADH_zinc_N: Zinc-bind 91.8 0.51 1.1E-05 39.7 6.4 86 240-344 1-89 (130)
281 cd08283 FDH_like_1 Glutathione 91.7 1.2 2.7E-05 45.1 10.1 114 230-345 184-307 (386)
282 COG1064 AdhP Zn-dependent alco 91.5 0.59 1.3E-05 46.8 7.3 90 231-343 167-258 (339)
283 COG1867 TRM1 N2,N2-dimethylgua 91.3 1.7 3.7E-05 43.8 10.2 103 231-349 53-160 (380)
284 COG3897 Predicted methyltransf 91.1 0.59 1.3E-05 43.1 6.2 101 230-349 79-184 (218)
285 PF01795 Methyltransf_5: MraW 90.8 1 2.3E-05 44.6 8.2 75 230-305 20-99 (310)
286 PF09243 Rsm22: Mitochondrial 90.7 2.3 4.9E-05 41.4 10.5 123 230-363 33-162 (274)
287 KOG2793 Putative N2,N2-dimethy 89.9 2.7 5.9E-05 40.3 9.9 106 231-349 87-204 (248)
288 KOG2198 tRNA cytosine-5-methyl 89.8 3.8 8.3E-05 41.3 11.2 114 230-344 155-296 (375)
289 PF05711 TylF: Macrocin-O-meth 88.0 1.9 4.1E-05 41.4 7.5 99 231-342 75-210 (248)
290 COG0286 HsdM Type I restrictio 86.4 3.4 7.5E-05 43.7 9.0 114 231-346 187-328 (489)
291 KOG1596 Fibrillarin and relate 85.5 5.3 0.00011 38.2 8.7 101 231-343 157-260 (317)
292 COG0275 Predicted S-adenosylme 85.1 5.9 0.00013 39.1 9.1 74 231-304 24-101 (314)
293 PF03492 Methyltransf_7: SAM d 84.6 5.8 0.00013 39.8 9.2 109 230-343 16-182 (334)
294 KOG1253 tRNA methyltransferase 84.0 1.7 3.8E-05 45.3 5.2 105 230-347 109-220 (525)
295 KOG2798 Putative trehalase [Ca 83.8 2 4.3E-05 42.5 5.2 31 230-262 150-180 (369)
296 cd08254 hydroxyacyl_CoA_DH 6-h 82.7 11 0.00023 36.8 10.2 95 231-343 166-262 (338)
297 COG4301 Uncharacterized conser 81.9 20 0.00043 34.6 10.9 110 231-348 79-197 (321)
298 PF05206 TRM13: Methyltransfer 80.1 2.4 5.1E-05 41.1 4.3 59 230-288 18-85 (259)
299 COG1063 Tdh Threonine dehydrog 80.0 12 0.00026 37.6 9.7 97 231-343 169-268 (350)
300 cd00315 Cyt_C5_DNA_methylase C 78.8 4.8 0.0001 39.1 6.1 123 233-364 2-138 (275)
301 PRK09880 L-idonate 5-dehydroge 77.8 14 0.0003 36.6 9.3 94 231-343 170-265 (343)
302 cd05188 MDR Medium chain reduc 77.0 19 0.00042 33.3 9.6 98 230-344 134-232 (271)
303 PRK03659 glutathione-regulated 76.6 24 0.00052 38.3 11.3 95 239-349 406-503 (601)
304 KOG1501 Arginine N-methyltrans 76.5 5.7 0.00012 41.1 5.9 51 231-282 67-122 (636)
305 PF11899 DUF3419: Protein of u 76.0 5.7 0.00012 40.6 5.9 64 272-344 271-334 (380)
306 COG4121 Uncharacterized conser 75.0 15 0.00033 35.3 8.2 124 231-364 59-224 (252)
307 TIGR03451 mycoS_dep_FDH mycoth 73.1 26 0.00055 34.9 9.9 97 231-343 177-275 (358)
308 cd05278 FDH_like Formaldehyde 71.3 31 0.00068 33.7 9.9 97 231-343 168-266 (347)
309 TIGR03366 HpnZ_proposed putati 70.9 34 0.00074 32.8 9.8 96 231-343 121-217 (280)
310 cd08230 glucose_DH Glucose deh 70.8 22 0.00049 35.3 8.8 92 231-343 173-268 (355)
311 PRK15001 SAM-dependent 23S rib 69.1 43 0.00094 34.2 10.4 106 233-359 47-157 (378)
312 KOG4174 Uncharacterized conser 69.0 44 0.00095 32.3 9.6 127 230-359 56-206 (282)
313 COG5459 Predicted rRNA methyla 68.6 5 0.00011 40.4 3.3 106 230-343 113-224 (484)
314 KOG0024 Sorbitol dehydrogenase 67.5 47 0.001 33.3 9.8 97 231-343 170-272 (354)
315 COG4627 Uncharacterized protei 67.3 7.8 0.00017 34.6 4.0 85 232-349 4-91 (185)
316 PF00145 DNA_methylase: C-5 cy 66.4 61 0.0013 31.3 10.8 122 233-364 2-137 (335)
317 PRK10669 putative cation:proto 66.1 60 0.0013 34.8 11.4 104 239-362 423-529 (558)
318 cd08281 liver_ADH_like1 Zinc-d 65.9 39 0.00085 33.8 9.5 97 231-343 192-289 (371)
319 KOG2651 rRNA adenine N-6-methy 65.6 9.3 0.0002 38.9 4.6 32 231-263 154-185 (476)
320 cd08261 Zn_ADH7 Alcohol dehydr 64.6 50 0.0011 32.2 9.8 96 231-343 160-257 (337)
321 TIGR02822 adh_fam_2 zinc-bindi 64.6 48 0.001 32.7 9.7 87 231-343 166-253 (329)
322 COG3510 CmcI Cephalosporin hyd 64.4 24 0.00052 32.7 6.6 106 230-343 69-179 (237)
323 PF06859 Bin3: Bicoid-interact 64.3 2.5 5.3E-05 35.4 0.3 48 300-349 2-50 (110)
324 COG1565 Uncharacterized conser 63.6 16 0.00036 36.9 6.0 41 226-266 73-121 (370)
325 PF01555 N6_N4_Mtase: DNA meth 63.5 9.3 0.0002 34.9 4.1 43 225-270 187-229 (231)
326 PRK03562 glutathione-regulated 63.1 62 0.0013 35.4 10.9 99 232-348 401-502 (621)
327 PF11312 DUF3115: Protein of u 62.5 10 0.00022 37.6 4.3 109 231-343 87-241 (315)
328 KOG2352 Predicted spermine/spe 62.1 26 0.00057 36.7 7.3 128 231-359 296-433 (482)
329 TIGR03201 dearomat_had 6-hydro 62.0 57 0.0012 32.3 9.7 46 230-276 166-212 (349)
330 KOG4058 Uncharacterized conser 62.0 25 0.00055 31.2 6.1 58 230-288 72-134 (199)
331 cd08232 idonate-5-DH L-idonate 61.7 58 0.0013 31.8 9.6 95 231-343 166-261 (339)
332 cd08285 NADP_ADH NADP(H)-depen 61.2 61 0.0013 31.9 9.7 96 231-342 167-264 (351)
333 cd06259 YdcF-like YdcF-like. Y 61.1 41 0.00089 28.9 7.5 70 9-78 2-95 (150)
334 TIGR00675 dcm DNA-methyltransf 61.0 77 0.0017 31.4 10.3 120 234-364 1-135 (315)
335 PHA01634 hypothetical protein 61.0 17 0.00037 31.4 4.7 42 230-272 28-69 (156)
336 PF03446 NAD_binding_2: NAD bi 60.8 63 0.0014 28.4 8.8 104 237-364 7-115 (163)
337 PRK09590 celB cellobiose phosp 60.6 95 0.0021 25.6 9.1 82 237-350 6-87 (104)
338 PRK11524 putative methyltransf 60.2 15 0.00032 35.9 4.9 42 224-268 203-244 (284)
339 PLN02827 Alcohol dehydrogenase 60.1 70 0.0015 32.3 10.1 96 231-343 194-294 (378)
340 cd05564 PTS_IIB_chitobiose_lic 59.3 54 0.0012 26.4 7.4 79 237-349 4-82 (96)
341 COG1568 Predicted methyltransf 58.8 52 0.0011 32.3 8.1 120 230-362 152-281 (354)
342 cd05565 PTS_IIB_lactose PTS_II 58.6 46 0.00099 27.3 6.8 81 237-351 5-85 (99)
343 PRK10309 galactitol-1-phosphat 58.3 78 0.0017 31.2 9.9 97 231-343 161-259 (347)
344 COG1748 LYS9 Saccharopine dehy 57.8 71 0.0015 32.8 9.5 57 232-288 2-59 (389)
345 cd08234 threonine_DH_like L-th 57.5 95 0.0021 30.1 10.3 95 231-343 160-256 (334)
346 cd08239 THR_DH_like L-threonin 57.4 84 0.0018 30.7 10.0 95 231-343 164-261 (339)
347 PRK09496 trkA potassium transp 57.0 1.1E+02 0.0023 31.5 11.0 75 231-309 231-307 (453)
348 cd08236 sugar_DH NAD(P)-depend 56.9 93 0.002 30.4 10.2 95 231-343 160-257 (343)
349 PF01234 NNMT_PNMT_TEMT: NNMT/ 56.8 9.4 0.0002 36.8 2.9 80 279-364 137-234 (256)
350 PF02636 Methyltransf_28: Puta 56.7 9.3 0.0002 36.5 2.8 34 231-264 19-60 (252)
351 PLN03154 putative allyl alcoho 56.1 98 0.0021 30.7 10.3 95 230-343 158-257 (348)
352 KOG0023 Alcohol dehydrogenase, 55.5 51 0.0011 33.0 7.7 95 231-343 182-278 (360)
353 COG3129 Predicted SAM-dependen 55.3 13 0.00028 35.4 3.4 113 196-312 41-164 (292)
354 PRK10206 putative oxidoreducta 54.9 84 0.0018 31.4 9.5 69 233-310 3-75 (344)
355 PLN02740 Alcohol dehydrogenase 54.8 94 0.002 31.2 10.0 94 231-343 199-299 (381)
356 PRK10834 vancomycin high tempe 54.0 48 0.001 31.7 7.1 59 3-62 41-122 (239)
357 TIGR02818 adh_III_F_hyde S-(hy 52.9 1.1E+02 0.0024 30.6 10.1 96 231-343 186-286 (368)
358 cd08255 2-desacetyl-2-hydroxye 52.7 1E+02 0.0022 29.0 9.4 89 231-343 98-189 (277)
359 TIGR02825 B4_12hDH leukotriene 52.6 1.4E+02 0.003 29.0 10.5 94 231-343 139-236 (325)
360 cd08245 CAD Cinnamyl alcohol d 51.5 1.3E+02 0.0027 29.2 10.0 94 230-344 162-256 (330)
361 PRK02006 murD UDP-N-acetylmura 51.4 41 0.00089 35.4 6.9 43 6-48 387-430 (498)
362 PRK11559 garR tartronate semia 50.7 1.3E+02 0.0029 29.0 10.0 106 234-363 5-116 (296)
363 COG0604 Qor NADPH:quinone redu 49.9 1.3E+02 0.0029 29.8 10.0 95 231-343 143-240 (326)
364 cd08237 ribitol-5-phosphate_DH 49.9 87 0.0019 31.0 8.7 91 230-343 163-255 (341)
365 PF01555 N6_N4_Mtase: DNA meth 49.5 8.5 0.00018 35.2 1.3 26 324-349 36-61 (231)
366 KOG2811 Uncharacterized conser 49.2 34 0.00074 34.7 5.4 57 232-288 184-246 (420)
367 cd05281 TDH Threonine dehydrog 48.9 1.3E+02 0.0029 29.3 9.8 96 231-343 164-261 (341)
368 PRK09424 pntA NAD(P) transhydr 48.5 1.4E+02 0.003 31.8 10.3 104 230-343 164-284 (509)
369 cd08278 benzyl_alcohol_DH Benz 48.5 1.6E+02 0.0036 29.2 10.5 97 231-343 187-284 (365)
370 PRK05396 tdh L-threonine 3-deh 48.3 1.2E+02 0.0027 29.5 9.5 97 231-343 164-262 (341)
371 TIGR00692 tdh L-threonine 3-de 48.2 1.5E+02 0.0032 29.0 10.1 96 231-343 162-260 (340)
372 PF07279 DUF1442: Protein of u 48.2 2.4E+02 0.0053 26.5 11.5 72 230-306 41-122 (218)
373 COG0673 MviM Predicted dehydro 47.2 2.4E+02 0.0051 27.5 11.3 70 232-310 4-78 (342)
374 TIGR02819 fdhA_non_GSH formald 47.0 1.9E+02 0.0041 29.4 10.8 109 231-343 186-298 (393)
375 cd05285 sorbitol_DH Sorbitol d 46.5 1.7E+02 0.0037 28.6 10.2 96 231-343 163-264 (343)
376 COG5379 BtaA S-adenosylmethion 46.1 48 0.0011 32.7 5.8 64 273-345 304-367 (414)
377 TIGR01202 bchC 2-desacetyl-2-h 45.9 1.1E+02 0.0023 29.8 8.5 85 231-343 145-230 (308)
378 PRK13699 putative methylase; P 45.4 38 0.00082 31.9 5.0 33 230-264 163-195 (227)
379 PF10087 DUF2325: Uncharacteri 44.8 70 0.0015 25.6 5.9 20 10-31 2-21 (97)
380 PF05050 Methyltransf_21: Meth 44.8 41 0.00089 28.8 4.9 32 236-267 1-36 (167)
381 cd08295 double_bond_reductase_ 44.7 2E+02 0.0043 28.1 10.3 94 231-343 152-250 (338)
382 PRK07417 arogenate dehydrogena 44.6 1.1E+02 0.0025 29.4 8.4 83 234-340 3-87 (279)
383 PRK10537 voltage-gated potassi 44.5 1.7E+02 0.0037 30.1 9.9 103 239-362 246-350 (393)
384 PRK00683 murD UDP-N-acetylmura 43.3 65 0.0014 33.1 6.8 41 5-45 311-352 (418)
385 PLN02702 L-idonate 5-dehydroge 42.8 2.1E+02 0.0046 28.2 10.3 99 231-343 182-284 (364)
386 PRK09496 trkA potassium transp 42.0 2E+02 0.0044 29.4 10.3 95 234-344 3-99 (453)
387 cd08279 Zn_ADH_class_III Class 41.8 2E+02 0.0043 28.5 9.9 95 231-343 183-281 (363)
388 KOG1099 SAM-dependent methyltr 41.6 95 0.0021 29.7 6.8 117 231-358 42-181 (294)
389 TIGR00853 pts-lac PTS system, 41.6 1.6E+02 0.0035 23.7 7.5 82 233-349 5-86 (95)
390 cd08294 leukotriene_B4_DH_like 41.4 2.6E+02 0.0057 26.8 10.5 95 231-343 144-240 (329)
391 cd08238 sorbose_phosphate_red 41.3 2.1E+02 0.0046 29.1 10.2 95 231-342 176-286 (410)
392 cd08277 liver_alcohol_DH_like 41.0 2.1E+02 0.0045 28.5 9.9 96 231-343 185-285 (365)
393 PF02153 PDH: Prephenate dehyd 40.9 1.3E+02 0.0027 28.8 7.9 93 244-358 1-94 (258)
394 PRK11579 putative oxidoreducta 40.4 1.8E+02 0.004 28.8 9.4 69 232-311 5-76 (346)
395 PF11599 AviRa: RRNA methyltra 40.3 35 0.00075 32.3 3.7 35 230-264 51-87 (246)
396 COG2813 RsmC 16S RNA G1207 met 40.1 86 0.0019 31.0 6.6 57 298-363 36-92 (300)
397 KOG2912 Predicted DNA methylas 39.9 56 0.0012 32.7 5.2 52 234-285 106-162 (419)
398 PRK02705 murD UDP-N-acetylmura 39.7 65 0.0014 33.3 6.2 42 6-47 348-390 (459)
399 PLN02819 lysine-ketoglutarate 39.7 1.9E+02 0.0042 33.7 10.2 78 231-311 569-660 (1042)
400 PRK09489 rsmC 16S ribosomal RN 39.6 66 0.0014 32.3 6.0 109 231-360 20-128 (342)
401 cd08293 PTGR2 Prostaglandin re 39.3 2E+02 0.0043 28.0 9.4 93 232-343 156-253 (345)
402 KOG1098 Putative SAM-dependent 39.1 28 0.0006 37.7 3.2 34 230-263 44-78 (780)
403 cd08240 6_hydroxyhexanoate_dh_ 39.0 2.6E+02 0.0056 27.4 10.1 96 231-342 176-272 (350)
404 cd08300 alcohol_DH_class_III c 38.6 2.7E+02 0.0058 27.7 10.3 96 231-343 187-287 (368)
405 KOG0822 Protein kinase inhibit 37.7 99 0.0021 33.1 6.9 97 231-342 368-476 (649)
406 PRK15182 Vi polysaccharide bio 37.0 2.5E+02 0.0054 29.1 9.9 107 232-352 7-129 (425)
407 KOG2671 Putative RNA methylase 36.8 61 0.0013 32.8 5.0 104 230-343 208-353 (421)
408 cd08301 alcohol_DH_plants Plan 36.7 2.9E+02 0.0064 27.3 10.2 96 231-343 188-288 (369)
409 PRK07502 cyclohexadienyl dehyd 36.5 2E+02 0.0044 28.0 8.9 90 232-342 7-98 (307)
410 PRK15057 UDP-glucose 6-dehydro 36.5 3.8E+02 0.0082 27.4 11.0 60 298-359 72-133 (388)
411 PRK11064 wecC UDP-N-acetyl-D-m 36.0 4.4E+02 0.0095 27.1 11.5 124 233-360 5-136 (415)
412 COG0287 TyrA Prephenate dehydr 36.0 2E+02 0.0042 28.1 8.4 106 232-360 4-111 (279)
413 cd08286 FDH_like_ADH2 formalde 35.7 1.8E+02 0.0039 28.4 8.4 96 232-343 168-265 (345)
414 PLN02353 probable UDP-glucose 35.5 3.7E+02 0.008 28.4 11.0 124 233-359 3-143 (473)
415 PRK10458 DNA cytosine methylas 34.9 4E+02 0.0086 28.1 11.0 132 231-364 88-254 (467)
416 PF14740 DUF4471: Domain of un 34.8 79 0.0017 31.1 5.4 72 278-363 202-283 (289)
417 cd08263 Zn_ADH10 Alcohol dehyd 34.6 3E+02 0.0065 27.2 9.9 95 231-343 188-286 (367)
418 cd08233 butanediol_DH_like (2R 34.6 2.7E+02 0.006 27.2 9.6 97 231-343 173-271 (351)
419 PF03269 DUF268: Caenorhabditi 34.5 54 0.0012 29.6 3.8 20 325-344 92-111 (177)
420 TIGR00518 alaDH alanine dehydr 34.0 2.2E+02 0.0049 28.8 8.9 101 231-345 167-269 (370)
421 PF02826 2-Hacid_dh_C: D-isome 33.5 3.3E+02 0.0072 24.2 9.1 90 230-342 35-125 (178)
422 PF03721 UDPG_MGDP_dh_N: UDP-g 33.2 1.8E+02 0.004 26.3 7.3 62 299-361 76-139 (185)
423 PF08468 MTS_N: Methyltransfer 32.9 56 0.0012 29.0 3.8 109 231-361 13-122 (155)
424 PRK05225 ketol-acid reductoiso 32.5 90 0.002 32.9 5.6 86 230-344 35-131 (487)
425 PF07991 IlvN: Acetohydroxy ac 32.2 1.2E+02 0.0026 27.3 5.7 91 231-345 4-96 (165)
426 cd08241 QOR1 Quinone oxidoredu 32.1 3.7E+02 0.0081 25.2 9.8 95 231-343 140-237 (323)
427 TIGR00497 hsdM type I restrict 32.0 2.6E+02 0.0055 29.6 9.2 110 231-343 218-354 (501)
428 PRK04308 murD UDP-N-acetylmura 31.9 1.3E+02 0.0027 31.1 6.8 40 6-45 342-382 (445)
429 KOG1209 1-Acyl dihydroxyaceton 31.7 1.8E+02 0.004 27.6 7.0 74 230-306 6-88 (289)
430 cd05284 arabinose_DH_like D-ar 31.7 2.6E+02 0.0056 27.1 8.7 97 231-343 168-265 (340)
431 TIGR00027 mthyl_TIGR00027 meth 31.5 3E+02 0.0064 26.5 8.8 107 231-344 82-197 (260)
432 cd08231 MDR_TM0436_like Hypoth 31.4 4.2E+02 0.0092 26.0 10.4 96 231-343 178-279 (361)
433 TIGR01692 HIBADH 3-hydroxyisob 30.8 4.8E+02 0.01 25.1 10.3 103 240-364 3-111 (288)
434 COG1062 AdhC Zn-dependent alco 30.7 5.5E+02 0.012 26.1 10.6 95 230-343 185-284 (366)
435 PRK00299 sulfur transfer prote 30.1 88 0.0019 24.4 4.1 56 297-365 9-64 (81)
436 PRK09548 PTS system ascorbate- 29.9 2.8E+02 0.0062 30.2 9.0 55 232-306 507-561 (602)
437 PF05968 Bacillus_PapR: Bacill 29.4 18 0.00039 25.1 -0.0 40 34-75 3-43 (48)
438 TIGR02817 adh_fam_1 zinc-bindi 29.1 4.7E+02 0.01 25.1 10.1 96 231-343 149-246 (336)
439 PRK09422 ethanol-active dehydr 29.1 4.8E+02 0.01 25.2 10.1 95 231-343 163-260 (338)
440 cd08287 FDH_like_ADH3 formalde 28.4 3.7E+02 0.008 26.1 9.3 93 232-343 171-267 (345)
441 cd08265 Zn_ADH3 Alcohol dehydr 28.1 5.7E+02 0.012 25.5 10.7 98 231-343 204-306 (384)
442 TIGR03026 NDP-sugDHase nucleot 28.0 4.2E+02 0.0091 27.1 9.8 55 299-354 76-131 (411)
443 KOG2920 Predicted methyltransf 27.6 45 0.00097 32.6 2.4 34 230-264 116-149 (282)
444 PRK09250 fructose-bisphosphate 27.3 51 0.0011 33.3 2.8 60 6-76 281-343 (348)
445 PF04072 LCM: Leucine carboxyl 27.3 72 0.0016 28.7 3.6 57 231-287 79-141 (183)
446 PF07101 DUF1363: Protein of u 27.0 23 0.0005 28.8 0.2 17 234-250 6-22 (124)
447 cd04234 AAK_AK AAK_AK: Amino A 26.7 4E+02 0.0087 24.8 8.7 30 116-145 139-168 (227)
448 COG1255 Uncharacterized protei 26.7 4E+02 0.0087 22.7 7.5 67 231-310 14-81 (129)
449 cd00218 GlcAT-I Beta1,3-glucur 26.4 1.2E+02 0.0025 28.8 4.8 57 300-359 56-118 (223)
450 PRK08507 prephenate dehydrogen 26.1 3.9E+02 0.0084 25.5 8.7 84 234-341 3-88 (275)
451 PRK13302 putative L-aspartate 26.0 5.4E+02 0.012 24.8 9.7 104 237-365 12-120 (271)
452 COG1088 RfbB dTDP-D-glucose 4, 25.7 4.1E+02 0.0089 26.5 8.5 59 244-304 16-79 (340)
453 TIGR00872 gnd_rel 6-phosphoglu 25.2 6.3E+02 0.014 24.5 10.2 108 234-363 3-113 (298)
454 PRK03803 murD UDP-N-acetylmura 25.0 2.5E+02 0.0055 28.9 7.6 43 6-48 344-387 (448)
455 cd03420 SirA_RHOD_Pry_redox Si 24.9 2E+02 0.0044 21.4 5.1 39 327-365 16-54 (69)
456 smart00859 Semialdhyde_dh Semi 24.8 2.3E+02 0.0051 23.2 6.1 25 236-260 4-30 (122)
457 KOG2782 Putative SAM dependent 24.8 62 0.0013 30.7 2.6 40 230-269 43-82 (303)
458 cd03422 YedF YedF is a bacteri 24.7 1.5E+02 0.0033 22.1 4.4 39 327-365 16-54 (69)
459 COG2044 Predicted peroxiredoxi 24.5 1.6E+02 0.0036 25.0 4.9 55 64-131 62-116 (120)
460 PRK08300 acetaldehyde dehydrog 24.2 2.8E+02 0.006 27.5 7.2 69 232-306 5-77 (302)
461 PRK03958 tRNA 2'-O-methylase; 24.1 83 0.0018 28.6 3.2 25 6-36 103-127 (176)
462 PF00186 DHFR_1: Dihydrofolate 24.0 57 0.0012 29.1 2.2 22 10-37 94-115 (161)
463 COG0677 WecC UDP-N-acetyl-D-ma 23.8 8.4E+02 0.018 25.4 11.8 121 232-359 10-144 (436)
464 KOG2741 Dimeric dihydrodiol de 23.8 7.7E+02 0.017 25.0 10.4 66 237-311 12-84 (351)
465 TIGR00290 MJ0570_dom MJ0570-re 23.7 5.3E+02 0.012 24.3 8.8 37 102-138 144-191 (223)
466 cd08256 Zn_ADH2 Alcohol dehydr 23.7 4.6E+02 0.01 25.6 9.0 93 232-342 176-272 (350)
467 cd05279 Zn_ADH1 Liver alcohol 23.4 5.8E+02 0.013 25.2 9.7 96 231-343 184-284 (365)
468 PF01408 GFO_IDH_MocA: Oxidore 23.3 3.9E+02 0.0085 21.4 11.0 106 234-363 3-115 (120)
469 PRK10083 putative oxidoreducta 23.2 6.8E+02 0.015 24.1 10.5 96 231-343 161-258 (339)
470 PF03686 UPF0146: Uncharacteri 23.2 1.9E+02 0.004 24.9 5.0 88 231-344 14-102 (127)
471 cd08260 Zn_ADH6 Alcohol dehydr 23.1 6.3E+02 0.014 24.4 9.8 95 231-343 166-263 (345)
472 PF02875 Mur_ligase_C: Mur lig 22.9 99 0.0022 24.1 3.3 35 5-39 39-79 (91)
473 TIGR01761 thiaz-red thiazoliny 22.8 7.9E+02 0.017 24.7 11.9 65 231-305 3-70 (343)
474 PTZ00357 methyltransferase; Pr 22.4 2.6E+02 0.0056 31.3 6.9 97 233-339 703-830 (1072)
475 COG2084 MmsB 3-hydroxyisobutyr 22.4 5.3E+02 0.011 25.3 8.7 104 240-365 7-117 (286)
476 COG1553 DsrE Uncharacterized c 22.3 1.1E+02 0.0023 26.3 3.4 105 19-133 18-124 (126)
477 COG4309 Uncharacterized conser 22.1 1E+02 0.0023 24.9 3.1 31 327-359 24-54 (98)
478 PRK12490 6-phosphogluconate de 22.0 7.3E+02 0.016 24.0 11.0 105 240-363 7-114 (299)
479 PF06897 DUF1269: Protein of u 22.0 1.4E+02 0.0031 24.5 4.0 40 323-363 41-81 (102)
480 PRK08227 autoinducer 2 aldolas 21.9 60 0.0013 31.5 2.1 42 6-61 192-233 (264)
481 PRK04690 murD UDP-N-acetylmura 21.8 3.4E+02 0.0074 28.4 7.9 38 6-43 346-385 (468)
482 PRK15461 NADH-dependent gamma- 21.7 7.4E+02 0.016 24.0 10.2 105 236-364 6-116 (296)
483 COG0270 Dcm Site-specific DNA 21.6 2.7E+02 0.006 27.6 6.8 125 231-363 3-141 (328)
484 COG0059 IlvC Ketol-acid reduct 21.5 5.1E+02 0.011 25.9 8.3 90 231-344 18-109 (338)
485 KOG0564 5,10-methylenetetrahyd 21.5 2.1E+02 0.0046 30.3 5.9 152 197-362 20-208 (590)
486 cd00291 SirA_YedF_YeeD SirA, Y 21.1 2.4E+02 0.0052 20.5 4.9 38 328-365 17-54 (69)
487 KOG1227 Putative methyltransfe 21.1 40 0.00088 33.4 0.7 72 230-307 194-270 (351)
488 PF05368 NmrA: NmrA-like famil 21.1 1.8E+02 0.0038 26.7 5.1 55 20-90 53-107 (233)
489 KOG2078 tRNA modification enzy 21.0 76 0.0017 33.0 2.6 57 231-289 250-312 (495)
490 PRK10310 PTS system galactitol 20.9 3.2E+02 0.0069 21.8 5.9 51 237-306 7-57 (94)
491 cd08243 quinone_oxidoreductase 20.7 7.1E+02 0.015 23.4 10.1 93 231-343 143-237 (320)
492 cd08291 ETR_like_1 2-enoyl thi 20.6 3.5E+02 0.0077 26.1 7.4 92 232-343 145-241 (324)
493 PRK01390 murD UDP-N-acetylmura 20.5 3.6E+02 0.0078 27.9 7.7 42 7-48 354-395 (460)
494 PLN02586 probable cinnamyl alc 20.3 5.9E+02 0.013 25.3 9.0 92 231-343 184-277 (360)
No 1
>PLN03034 phosphoglycerate kinase; Provisional
Probab=100.00 E-value=1.5e-62 Score=494.98 Aligned_cols=214 Identities=31% Similarity=0.536 Sum_probs=198.7
Q ss_pred CCCCCCcEEEEEcCCccchHHHHHHHHHHhcCeEEEehHHHHHHHHHcCCCCCCcccccCchHHHHHHHHHHhhCCCeee
Q 014919 2 AKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAASDLIQFARDKHITIL 81 (416)
Q Consensus 2 ~~~~~~p~~~i~GGaKv~dki~~~~~l~~~~d~~~~gG~~a~~fl~a~g~~ig~s~~e~~~~~~a~~~~~~~~~~~~~i~ 81 (416)
+++|+||+++|+|||||||||++|+||+++||+||+||+||||||+|+|++||+|++|++.++.|++|+++++++|++|+
T Consensus 262 ~~~p~rP~vaIlGGaKVsdKI~vi~~Ll~kvD~lliGG~ma~tFl~A~G~~IG~slvE~d~i~~A~~il~~a~~~gv~I~ 341 (481)
T PLN03034 262 VSNPKRPFAAIVGGSKVSSKIGVIESLLEKCDILLLGGGMIFTFYKAQGLSVGSSLVEEDKLELATSLLAKAKAKGVSLL 341 (481)
T ss_pred HcCCCCceEEEEcCccHHhHHHHHHHHHHhcCEEEECcHHHHHHHHHcCCCcchhhcChhhhHHHHHHHHHHHhcCCEEE
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeEEEecCC-CCCceeeecCCCCCCCCCccccChhhHHHHHHHhccCCeEEEeccceEEEeCCCCchHHHHHHHHHhh
Q 014919 82 YPKDFWCTKIH-HPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKV 160 (416)
Q Consensus 82 lP~D~~v~~~~-~~~~~~~~~~~~i~~~~~~~DiGp~T~~~~~~~~~~a~~i~wnGp~G~~e~~~f~~GT~~l~~~~a~~ 160 (416)
||+||+|++++ .+.+..++++++||++||++||||+|++.|++++..|+||+||||||+||+++|+.||++|+++++++
T Consensus 342 lPvD~v~a~~~~~~~~~~~~~~~~Ip~~~~~lDIGp~Ti~~~~~~i~~akTI~WNGPmGvFE~~~Fa~GT~~l~~aia~~ 421 (481)
T PLN03034 342 LPTDVVIADKFAPDANSKIVPASAIPDGWMGLDIGPDSVKTFNEALDTTQTVIWNGPMGVFEFEKFAVGTEAVAKKLAEL 421 (481)
T ss_pred CCceEEEecccCCCCCeEEeehhcCCCCCEEEecCHHHHHHHHHHHhhCCEEEEECCcccccCCcchHHHHHHHHHHHHh
Confidence 99999999876 33445566889999999999999999999999999999999999999999999999999999999997
Q ss_pred hcCCCCeEEEcchh---HHHHhcccCCccceeeecCCceEeeeecccCCCCcccccccCcc
Q 014919 161 SQGTCNVTVIGSMA---CKAIAKVSSSIFGLNMVESGSAVWEFLKGRMLPGVSALDRAFPF 218 (416)
Q Consensus 161 ~~~~~~~~v~gg~~---~~~~~~~~~~~~~~st~~GGGa~le~l~gr~lPg~~aL~~~~p~ 218 (416)
++++ .+||+|||+ ++..+|+.++++|+|| ||||+|+||+|+.+|++++|.+..|+
T Consensus 422 ~~~~-a~sIvGGGDt~aAi~~~g~~~~~shiST--GGGA~Le~LeGk~LPgv~aL~~~~~~ 479 (481)
T PLN03034 422 SGKG-VTTIIGGGDSVAAVEKVGVADVMSHIST--GGGASLELLEGKELPGVVALDEATPV 479 (481)
T ss_pred hcCC-CeEEEcCcHHHHHHHHcCCccceeEEeC--cHHHHHHHHcCCCCcHHHHHhhcCCc
Confidence 6554 488988886 4456788888999999 89999999999999999999887764
No 2
>COG0126 Pgk 3-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=9.2e-63 Score=481.59 Aligned_cols=205 Identities=28% Similarity=0.475 Sum_probs=187.8
Q ss_pred CCCCCCCcEEEEEcCCccchHHHHHHHHHHhcCeEEEehHHHHHHHHHcCCCCCCcccccCchHHHHHHHHHHhhCCCee
Q 014919 1 MAKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAASDLIQFARDKHITI 80 (416)
Q Consensus 1 ~~~~~~~p~~~i~GGaKv~dki~~~~~l~~~~d~~~~gG~~a~~fl~a~g~~ig~s~~e~~~~~~a~~~~~~~~~~~~~i 80 (416)
++++|+||+++|+|||||||||+||+||+++||+|||||+||||||+|+|++||+|++|.+.++.|++|++++++ +|
T Consensus 185 ~l~~p~rP~vaIlGGaKVsdki~vienLl~kaD~liigGgma~tFl~A~G~~vG~sl~E~~~~~~Ak~ll~k~~~---~I 261 (395)
T COG0126 185 ALENPERPFVAILGGAKVSDKIGVIENLLKKADKLIIGGGMANTFLKAQGYDVGKSLVEFDLIDGAKELLEKAKD---KI 261 (395)
T ss_pred HhcCCCCceEEEeeccccchHHHHHHHHHHhcCeEEecchHHHHHHHHhccccchHHHHHHHHHHHHHHHHHhCC---cE
Confidence 368999999999999999999999999999999999999999999999999999999999999999999999965 89
Q ss_pred ecceeEEEecCCCCC-ceeeecCCCCCCCCCccccChhhHHHHHHHhccCCeEEEeccceEEEeCCCCchHHHHHHHHHh
Q 014919 81 LYPKDFWCTKIHHPN-QVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCK 159 (416)
Q Consensus 81 ~lP~D~~v~~~~~~~-~~~~~~~~~i~~~~~~~DiGp~T~~~~~~~~~~a~~i~wnGp~G~~e~~~f~~GT~~l~~~~a~ 159 (416)
+||+|++|++++... ..... . +||++||++||||+|++.|++++..|+||+|||||||||+++|+.||.++++++++
T Consensus 262 ~lPvD~~v~~~f~~~~~~~~~-~-~i~~~~~~lDIGp~Ti~~~~~~i~~AktivwNGP~GVfE~~~Fa~GT~~v~~aia~ 339 (395)
T COG0126 262 VLPVDVVVAKEFSRDAPATVK-L-EIPDDLMILDIGPKTIELFAEIIKGAKTIVWNGPMGVFEFENFAKGTEEVAKAIAK 339 (395)
T ss_pred ECcceeEEccccccccccccc-c-CCCCCccccccCHHHHHHHHHHHhhCCEEEEeCCccceecchhhhhHHHHHHHHHh
Confidence 999999999998433 33332 3 99999999999999999999999999999999999999999999999999999998
Q ss_pred hhcCCCCeEEEcchh---HHHHhcccCCccceeeecCCceEeeeecccCCCCccccccc
Q 014919 160 VSQGTCNVTVIGSMA---CKAIAKVSSSIFGLNMVESGSAVWEFLKGRMLPGVSALDRA 215 (416)
Q Consensus 160 ~~~~~~~~~v~gg~~---~~~~~~~~~~~~~~st~~GGGa~le~l~gr~lPg~~aL~~~ 215 (416)
+ + .++||+|||+ ++..+|+.++++|+|| ||||+|+||+|+.+|++++|.+.
T Consensus 340 ~--~-~a~SiiGGGdt~aAi~~~G~~d~~shIST--GGGAsLe~leGk~LPgv~aL~~~ 393 (395)
T COG0126 340 S--S-GAFSIIGGGDTAAAIDKLGLADKISHIST--GGGASLEFLEGKELPGVEALEES 393 (395)
T ss_pred c--C-CCeEEECCcHHHHHHHHcCccccCceEec--CchHHHHHhcCCCcchHHHHhhc
Confidence 6 2 2589999986 4457889889999999 89999999999999999998754
No 3
>cd00318 Phosphoglycerate_kinase Phosphoglycerate kinase (PGK) is a monomeric enzyme which catalyzes the transfer of the high-energy phosphate group of 1,3-bisphosphoglycerate to ADP, forming ATP and 3-phosphoglycerate. This reaction represents the first of the two substrate-level phosphorylation events in the glycolytic pathway. Substrate-level phosphorylation is defined as production of ATP by a process, which is catalyzed by water-soluble enzymes in the cytosol; not involving membranes and ion gradients.
Probab=100.00 E-value=1.9e-62 Score=489.03 Aligned_cols=209 Identities=27% Similarity=0.529 Sum_probs=194.4
Q ss_pred CCCCCCcEEEEEcCCccchHHHHHHHHHHhcCeEEEehHHHHHHHHHcCCCCCCcccccCchHHHHHHHHHHhhCCCeee
Q 014919 2 AKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAASDLIQFARDKHITIL 81 (416)
Q Consensus 2 ~~~~~~p~~~i~GGaKv~dki~~~~~l~~~~d~~~~gG~~a~~fl~a~g~~ig~s~~e~~~~~~a~~~~~~~~~~~~~i~ 81 (416)
+++|+||+++|+|||||||||++|+||+++||+||+||+||||||+|+|++||+|++|++.++.|++|++++++++++|+
T Consensus 184 l~~p~rP~vaIlGGaKvsdKi~vl~~Ll~kvD~liigG~ma~tFL~A~G~~iG~sl~e~~~i~~a~~il~~a~~~~~~I~ 263 (397)
T cd00318 184 LENPERPFVAILGGAKVSDKIQVIENLLDKVDYLIIGGGMAFTFLKAQGMDIGKSLFEEDGIELAKSLLEKAKAKGVKIV 263 (397)
T ss_pred HcCCCCCeEEEEcCccHHhHHHHHHHHHHhcCEEEECcHHHHHHHHHcCCCcCccccChhhHHHHHHHHHHhHhcCCEEE
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeEEEecCC-CCCceeeecCCCCCCCCCccccChhhHHHHHHHhccCCeEEEeccceEEEeCCCCchHHHHHHHHHhh
Q 014919 82 YPKDFWCTKIH-HPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKV 160 (416)
Q Consensus 82 lP~D~~v~~~~-~~~~~~~~~~~~i~~~~~~~DiGp~T~~~~~~~~~~a~~i~wnGp~G~~e~~~f~~GT~~l~~~~a~~ 160 (416)
||+|++|++++ .+.+..++++++||++||++||||+|++.|++++..|+||+||||||+||+++|+.||++|++++++.
T Consensus 264 lPvD~~v~~~~~~~~~~~~~~~~~ip~~~~~lDIGp~Ti~~~~~~i~~aktI~wNGP~GvfE~~~F~~GT~~l~~aia~~ 343 (397)
T cd00318 264 LPVDVVVADKFKADANTKVVTDDGIPDGWMGLDIGPKTIELFAEVIRKAKTIVWNGPMGVFEFPAFAKGTKAIADAIAAA 343 (397)
T ss_pred CCceEEEeeccCCCCceEEEecccCCCCCEEEeeCHHHHHHHHHHHhhCCEEEEECCCcCccCCcccHHHHHHHHHHHHh
Confidence 99999999875 23444566889999999999999999999999999999999999999999999999999999999997
Q ss_pred hcCCCCeEEEcchh---HHHHhcccCCccceeeecCCceEeeeecccCCCCccccc
Q 014919 161 SQGTCNVTVIGSMA---CKAIAKVSSSIFGLNMVESGSAVWEFLKGRMLPGVSALD 213 (416)
Q Consensus 161 ~~~~~~~~v~gg~~---~~~~~~~~~~~~~~st~~GGGa~le~l~gr~lPg~~aL~ 213 (416)
++++ .+||+|||+ ++..+|+.++++|+|| ||||+|+||+|+.+|++++|.
T Consensus 344 ~~~~-a~sivGGGdt~aa~~~~g~~~~~shvST--GGGA~Le~LeGk~LPgi~aL~ 396 (397)
T cd00318 344 TKAG-AFSIIGGGDTAAAAEKFGLADKISHVST--GGGASLELLEGKELPGVAALE 396 (397)
T ss_pred ccCC-CEEEEeCcHHHHHHHHcCCCCCceEEcC--chHHHHHHHcCCCCchHHhhc
Confidence 6444 489999886 4456788888999999 899999999999999999885
No 4
>PLN02282 phosphoglycerate kinase
Probab=100.00 E-value=3.8e-62 Score=486.80 Aligned_cols=210 Identities=30% Similarity=0.519 Sum_probs=194.7
Q ss_pred CCCCCCcEEEEEcCCccchHHHHHHHHHHhcCeEEEehHHHHHHHHHcCCCCCCcccccCchHHHHHHHHHHhhCCCeee
Q 014919 2 AKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAASDLIQFARDKHITIL 81 (416)
Q Consensus 2 ~~~~~~p~~~i~GGaKv~dki~~~~~l~~~~d~~~~gG~~a~~fl~a~g~~ig~s~~e~~~~~~a~~~~~~~~~~~~~i~ 81 (416)
+++|+||+++|+|||||||||++|+||+++||+||+||+||||||+|+|++||+|++|++.++.|++|+++++++|++|+
T Consensus 187 l~~p~rP~vaIlGGaKvsdKi~vi~~Ll~kvD~lliGG~ma~tFl~A~G~~iG~sl~e~d~i~~a~~il~~a~~~g~~I~ 266 (401)
T PLN02282 187 VANPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFYKAQGYSVGSSLVEEDKLDLATSLIEKAKAKGVSLL 266 (401)
T ss_pred hcCCCCCeEEEEcCCcHHhHHHHHHHHHHhhhhheeccHHHHHHHHHcCCCcChhhcChhhHHHHHHHHHHHHhcCCEEe
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeEEEecCC-CCCceeeecCCCCCCCCCccccChhhHHHHHHHhccCCeEEEeccceEEEeCCCCchHHHHHHHHHhh
Q 014919 82 YPKDFWCTKIH-HPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKV 160 (416)
Q Consensus 82 lP~D~~v~~~~-~~~~~~~~~~~~i~~~~~~~DiGp~T~~~~~~~~~~a~~i~wnGp~G~~e~~~f~~GT~~l~~~~a~~ 160 (416)
||+||+|++++ .+.+..++++++||++||++||||+|++.|+++|..|+||+||||||+||+++|+.||++|++++++.
T Consensus 267 lPvD~v~~~~~~~~~~~~~~~~~~ip~~~~~lDIGp~Ti~~~~~~i~~aktI~wNGP~GvfE~~~F~~GT~~l~~aia~~ 346 (401)
T PLN02282 267 LPTDVVIADKFAPDANSKVVPASAIPDGWMGLDIGPDSIKTFSEALDTTKTIIWNGPMGVFEFEKFAAGTEAIAKKLAEL 346 (401)
T ss_pred CCceEEEecccCCCCCeEEeehhcCCCCCeeeccCHHHHHHHHHHHhhCCEEEEECCcCCccCcchhHHHHHHHHHHHHh
Confidence 99999999875 23344566789999999999999999999999999999999999999999999999999999999997
Q ss_pred hcCCCCeEEEcchh---HHHHhcccCCccceeeecCCceEeeeecccCCCCcccccc
Q 014919 161 SQGTCNVTVIGSMA---CKAIAKVSSSIFGLNMVESGSAVWEFLKGRMLPGVSALDR 214 (416)
Q Consensus 161 ~~~~~~~~v~gg~~---~~~~~~~~~~~~~~st~~GGGa~le~l~gr~lPg~~aL~~ 214 (416)
++++ .+||+|||+ ++..+|+.++++|+|| ||||+|+||+|+.+|++++|.+
T Consensus 347 t~~~-a~sivGGGdt~aA~~~~g~~~~~shvST--GGGA~Le~LeGk~LPgi~aL~~ 400 (401)
T PLN02282 347 SGKG-VTTIIGGGDSVAAVEKVGLADKMSHIST--GGGASLELLEGKPLPGVLALDD 400 (401)
T ss_pred hcCC-CEEEEeCcHHHHHHHHcCCcCCceEEeC--chHHHHHHHcCCCcchHHHhhc
Confidence 6444 488888876 4456788888999999 8999999999999999999864
No 5
>PRK00073 pgk phosphoglycerate kinase; Provisional
Probab=100.00 E-value=3.4e-61 Score=478.94 Aligned_cols=206 Identities=28% Similarity=0.509 Sum_probs=192.5
Q ss_pred CCCCCCcEEEEEcCCccchHHHHHHHHHHhcCeEEEehHHHHHHHHHcCCCCCCcccccCchHHHHHHHHHHhhCCCeee
Q 014919 2 AKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAASDLIQFARDKHITIL 81 (416)
Q Consensus 2 ~~~~~~p~~~i~GGaKv~dki~~~~~l~~~~d~~~~gG~~a~~fl~a~g~~ig~s~~e~~~~~~a~~~~~~~~~~~~~i~ 81 (416)
+++|+||+++|+|||||||||++|+||+++||+|++||+||||||+|+|++||+|++|++.++.|++|+++++++|++|+
T Consensus 180 l~~p~rP~vaIlGGaKvsdKi~vi~~Ll~~~D~liigG~ma~tFl~A~G~~ig~sl~e~~~i~~a~~il~~a~~~~~~i~ 259 (389)
T PRK00073 180 LENPERPFVAILGGAKVSDKIGVLENLLEKVDKLIIGGGMANTFLKAQGYNVGKSLVEEDLIDTAKELLEKAKEKGVKIP 259 (389)
T ss_pred hcCCCCCeEEEEcCccHHhHHHHHHHHHHhhhhheeChHHHHHHHHHcCCCcChhhcchhhHHHHHHHHHHHHhcCCEEE
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeEEEecCCCCCceeeecCCCCCCCCCccccChhhHHHHHHHhccCCeEEEeccceEEEeCCCCchHHHHHHHHHhhh
Q 014919 82 YPKDFWCTKIHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVS 161 (416)
Q Consensus 82 lP~D~~v~~~~~~~~~~~~~~~~i~~~~~~~DiGp~T~~~~~~~~~~a~~i~wnGp~G~~e~~~f~~GT~~l~~~~a~~~ 161 (416)
||+|++|++++.+.+..++++++||++||++||||+|++.|+++|..|+||+||||||+||+++|+.||++|++++++.+
T Consensus 260 lPvD~vv~~~~~~~~~~~~~~~~ip~~~~~lDIGp~Ti~~~~~~i~~akti~wNGP~GvfE~~~F~~GT~~l~~aia~~~ 339 (389)
T PRK00073 260 LPVDVVVAKEFSDAEATVVSVDEIPDDWMILDIGPKTIELFAEIIKDAKTIVWNGPMGVFEFENFAKGTKAVAKAIAEST 339 (389)
T ss_pred CCCeeEEeeccCCCceEEeEcccCCCCCeeeecCHHHHHHHHHHHhhCCEEEEECCCCccccccchHHHHHHHHHHHhcC
Confidence 99999999876444555668899999999999999999999999999999999999999999999999999999998843
Q ss_pred cCCCCeEEEcchh---HHHHhcccCCccceeeecCCceEeeeecccCCCCccccc
Q 014919 162 QGTCNVTVIGSMA---CKAIAKVSSSIFGLNMVESGSAVWEFLKGRMLPGVSALD 213 (416)
Q Consensus 162 ~~~~~~~v~gg~~---~~~~~~~~~~~~~~st~~GGGa~le~l~gr~lPg~~aL~ 213 (416)
++||+|||+ ++..+|+.++++|+|| ||||+|+||+|+.+|++++|.
T Consensus 340 ----a~sivGGGdt~aa~~~~g~~~~~shiST--GGGA~Le~LeGk~LPgv~aL~ 388 (389)
T PRK00073 340 ----AFSIIGGGDTAAAVEKLGLADKFSHIST--GGGASLEFLEGKELPGVAALE 388 (389)
T ss_pred ----CeEEEcCCHHHHHHHHcCCCCCccEEcC--CcHHHHHHHcCCCcchHHHhc
Confidence 489999886 4456888889999999 899999999999999999885
No 6
>PTZ00005 phosphoglycerate kinase; Provisional
Probab=100.00 E-value=9.8e-61 Score=478.82 Aligned_cols=210 Identities=25% Similarity=0.532 Sum_probs=192.3
Q ss_pred CCCCCCcEEEEEcCCccchHHHHHHHHHHhcCeEEEehHHHHHHHHH-cCCCCCCcccccCchHHHHHHHHHHhhCCCee
Q 014919 2 AKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHA-LGLPVPPELVEKGANDAASDLIQFARDKHITI 80 (416)
Q Consensus 2 ~~~~~~p~~~i~GGaKv~dki~~~~~l~~~~d~~~~gG~~a~~fl~a-~g~~ig~s~~e~~~~~~a~~~~~~~~~~~~~i 80 (416)
+++|+||+++|+|||||||||.+|+||+++||+|++||+||||||+| +|++||+|++|++.++.|++|+++++++|++|
T Consensus 201 ~~~p~rP~vaIlGGaKvsdKi~vl~~Ll~k~D~iligG~ma~tFL~A~~G~~iG~sl~E~~~i~~a~~il~~a~~~~~~I 280 (417)
T PTZ00005 201 LENPQRPFLAILGGAKVADKIQLIKNLLDKVDEMIIGGGMAFTFKKVLDNMPIGKSLFDEEGAKIVKEIMEKAKEKNVKI 280 (417)
T ss_pred hcCCCCceEEEEcCccHHhHHHHHHHHHHhcCEEEECcHHHHHHHHHhCCCccCccccChhhHHHHHHHHHHHHhcCCEE
Confidence 67999999999999999999999999999999999999999999999 68999999999999999999999999999999
Q ss_pred ecceeEEEecCCC-CCceeee-cCCCCCCCCCccccChhhHHHHHHHhccCCeEEEeccceEEEeCCCCchHHHHHHHHH
Q 014919 81 LYPKDFWCTKIHH-PNQVEIF-PSHGIPDGWEPVDIGPRSVEEITSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLC 158 (416)
Q Consensus 81 ~lP~D~~v~~~~~-~~~~~~~-~~~~i~~~~~~~DiGp~T~~~~~~~~~~a~~i~wnGp~G~~e~~~f~~GT~~l~~~~a 158 (416)
+||+|++|++++. +.+..++ +.++||++||++||||+|+++|++++..|+||+||||||+||+++|+.||++|+++++
T Consensus 281 ~lPvD~~v~~~~~~~~~~~~~~~~~~ip~~~~~lDIGp~Ti~~~~~~i~~akTV~wNGP~GvFE~~~F~~GT~~i~~aia 360 (417)
T PTZ00005 281 HLPVDFVCADKFDNNANTKVVTDKEGIPDGWMGLDAGPKSIEEFAEAILRAKTIVWNGPQGVFEMPNFAKGSIAMLDAVV 360 (417)
T ss_pred eCCceEEEecccCCCCCeEEecCccCCCCCCEEeccCHHHHHHHHHHHhhCCEEEEECCCccccCCcchHHHHHHHHHHH
Confidence 9999999998752 3343344 5678999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCeEEEcchh---HHHHhcccCCccceeeecCCceEeeeecccCCCCcccccc
Q 014919 159 KVSQGTCNVTVIGSMA---CKAIAKVSSSIFGLNMVESGSAVWEFLKGRMLPGVSALDR 214 (416)
Q Consensus 159 ~~~~~~~~~~v~gg~~---~~~~~~~~~~~~~~st~~GGGa~le~l~gr~lPg~~aL~~ 214 (416)
+.++++ .+||+|||+ ++..+|+.++++|+|| ||||+|+||+|+.+|++++|.+
T Consensus 361 ~~t~~~-a~sivGGGdt~aAi~~~g~~~~~shvST--GGGA~Le~LeGk~LPgv~aL~~ 416 (417)
T PTZ00005 361 KATEKG-AITIVGGGDTASLVEKTGAANKVSHVST--GGGASLELLEGKELPGVVALSN 416 (417)
T ss_pred HhccCC-CEEEEeCcHHHHHHHHcCCCCCCceEcC--chHHHHHHHcCCCcchHHHhhc
Confidence 866444 489988875 4457788888999999 8999999999999999999864
No 7
>KOG1367 consensus 3-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.7e-61 Score=452.22 Aligned_cols=210 Identities=27% Similarity=0.513 Sum_probs=194.5
Q ss_pred CCCCCCcEEEEEcCCccchHHHHHHHHHHhcCeEEEehHHHHHHHHHc-CCCCCCcccccCchHHHHHHHHHHhhCCCee
Q 014919 2 AKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHAL-GLPVPPELVEKGANDAASDLIQFARDKHITI 80 (416)
Q Consensus 2 ~~~~~~p~~~i~GGaKv~dki~~~~~l~~~~d~~~~gG~~a~~fl~a~-g~~ig~s~~e~~~~~~a~~~~~~~~~~~~~i 80 (416)
++||.|||+||+||+||+|||++|+||+++||.+||||+||||||+.+ |++||+|++|++..+.+++|+++|+++|++|
T Consensus 199 lenp~rPFlaIlGGaKVadKIqlI~nLldkv~~liigGGMaftFlKvl~~~eiG~Sl~de~g~e~v~~l~~kak~~~v~i 278 (416)
T KOG1367|consen 199 LENPVRPFLAILGGAKVADKIQLIENLLDKVNELIIGGGMAFTFLKVLNGMEIGKSLFDEEGAEIVKDLMEKAKAKGVRI 278 (416)
T ss_pred HcCCCcchhhhhcCchhhhHHHHHHHHHhhcceEEEcCceeehHHHHhCCcchhhhhhhhhhHHHHHHHHHHHHHcCcEE
Confidence 689999999999999999999999999999999999999999999997 6999999999999999999999999999999
Q ss_pred ecceeEEEecCC-CCCceeeec-CCCCCCCCCccccChhhHHHHHHHhccCCeEEEeccceEEEeCCCCchHHHHHHHHH
Q 014919 81 LYPKDFWCTKIH-HPNQVEIFP-SHGIPDGWEPVDIGPRSVEEITSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLC 158 (416)
Q Consensus 81 ~lP~D~~v~~~~-~~~~~~~~~-~~~i~~~~~~~DiGp~T~~~~~~~~~~a~~i~wnGp~G~~e~~~f~~GT~~l~~~~a 158 (416)
+||+||++++.+ +++....++ .+.||+|||+|||||.|++.|++.+.+++||+||||+|+||++.|++||.+|.+++.
T Consensus 279 ~lPvDfv~adkf~~da~s~~~ta~~gIp~g~mgLD~GPes~k~fa~~v~~aKtIvWNGP~GvfE~~~Fa~GTeal~d~~v 358 (416)
T KOG1367|consen 279 LLPVDFVIADKFAEDANSKQVTAEEGIPDGWMGLDIGPESIKMFAEAVATAKTIVWNGPPGVFEFEKFAAGTEALMDALV 358 (416)
T ss_pred EeeeeeeeeccccCccccceeccccCCCCCccccccChHHHHHHHHHHhhhhEEEecCCCcccchhhhhhhHHHHHHHHH
Confidence 999999999887 444444444 347999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCeEEEcchh---HHHHhcccCCccceeeecCCceEeeeecccCCCCcccccc
Q 014919 159 KVSQGTCNVTVIGSMA---CKAIAKVSSSIFGLNMVESGSAVWEFLKGRMLPGVSALDR 214 (416)
Q Consensus 159 ~~~~~~~~~~v~gg~~---~~~~~~~~~~~~~~st~~GGGa~le~l~gr~lPg~~aL~~ 214 (416)
+++..+. .+|+||++ ++..+|.+|+++|+|| ||||++|.++|+.+|++.+|..
T Consensus 359 ~~t~~G~-~tiiGGGDTata~~k~g~~dk~ShVST--GGGasLeLLeGK~LPGv~aLs~ 414 (416)
T KOG1367|consen 359 KLTGKGV-TTIIGGGDTATACKKFGTEDKVSHVST--GGGASLELLEGKVLPGVDALSE 414 (416)
T ss_pred HHhcCCc-EEEEcCCcHHHHHHHhCcccceeeeec--CCceehhhhcCCcCcchhhhcc
Confidence 9887775 78888764 5578999999999999 8999999999999999998864
No 8
>PRK13962 bifunctional phosphoglycerate kinase/triosephosphate isomerase; Provisional
Probab=100.00 E-value=1.5e-58 Score=485.86 Aligned_cols=218 Identities=26% Similarity=0.511 Sum_probs=197.8
Q ss_pred CCCCCCcEEEEEcCCccchHHHHHHHHHHhcCeEEEehHHHHHHHHHcCCCCCCcccccCchHHHHHHHHHHhhCCCeee
Q 014919 2 AKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAASDLIQFARDKHITIL 81 (416)
Q Consensus 2 ~~~~~~p~~~i~GGaKv~dki~~~~~l~~~~d~~~~gG~~a~~fl~a~g~~ig~s~~e~~~~~~a~~~~~~~~~~~~~i~ 81 (416)
+++|+||+++|+|||||||||++|+||+++||+||+||+||||||+|+|++||+|++|++.++.|++|+++++++|++|+
T Consensus 183 l~~p~rP~vaIlGGaKvsdKi~vl~~ll~~~D~iligG~ma~tFl~a~G~~ig~sl~e~~~~~~a~~il~~a~~~~~~i~ 262 (645)
T PRK13962 183 LANPQRPFVAILGGAKVSDKIGVIENLLEKVDKLLIGGGMAYTFLKAKGYEVGKSLVEEDKLDLAKELLAKAEEKGVKLL 262 (645)
T ss_pred HcCCCCceEEEEcCccHHhHHHHHHHHHHhCCEEEECcHHHHHHHHHcCCCCChhhcChhhHHHHHHHHHHHHhcCCEEE
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeEEEecCC-CCCceeeecCCCCCCCCCccccChhhHHHHHHHhccCCeEEEeccceEEEeCCCCchHHHHHHHHHhh
Q 014919 82 YPKDFWCTKIH-HPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKV 160 (416)
Q Consensus 82 lP~D~~v~~~~-~~~~~~~~~~~~i~~~~~~~DiGp~T~~~~~~~~~~a~~i~wnGp~G~~e~~~f~~GT~~l~~~~a~~ 160 (416)
||+|++|++++ .+.+..+++.++||++||++||||+|++.|++++..|+||+||||||+||+++|+.||++|+++++..
T Consensus 263 lPvD~~~~~~~~~~~~~~~~~~~~ip~~~~~lDIGp~Ti~~~~~~i~~akti~wNGP~GvfE~~~F~~GT~~l~~aia~~ 342 (645)
T PRK13962 263 LPVDSVVAKEFKNDAEHKVVPSDAIPEDWMGLDIGPETIELFAKKIADAKTIVWNGPMGVFEFDNFAEGTRAVAEAVAES 342 (645)
T ss_pred CCcEEEeecccCCCCceEEEecccCCCCCEEEeeCHHHHHHHHHHHhhCCEEEEECCCccccCCCchHHHHHHHHHHHhc
Confidence 99999999876 33444566789999999999999999999999999999999999999999999999999999999862
Q ss_pred hcCCCCeEEEcchh---HHHHhcccCCccceeeecCCceEeeeecccCCCCcccccccC---cc-ccccccc
Q 014919 161 SQGTCNVTVIGSMA---CKAIAKVSSSIFGLNMVESGSAVWEFLKGRMLPGVSALDRAF---PF-DIDWSAA 225 (416)
Q Consensus 161 ~~~~~~~~v~gg~~---~~~~~~~~~~~~~~st~~GGGa~le~l~gr~lPg~~aL~~~~---p~-~~~~~~~ 225 (416)
+ .+||+|||+ ++..+|+.++++|+|| ||||+|+||+|+.+|++++|.+.- |. ..+|+..
T Consensus 343 ---~-~~svvGGGdt~aa~~~~g~~~~~shvST--GGGA~Le~LeGk~LPgv~aL~~s~Mrk~~i~gNWKMn 408 (645)
T PRK13962 343 ---G-AITIIGGGDSAAAVEKLGFADKMSHIST--GGGASLEFLEGKVLPGIACLLDKNPRKPIIAGNWKMN 408 (645)
T ss_pred ---C-CeEEECchHHHHHHHHcCCccCceEEcC--ChHHHHHHHcCCccHHHHHHhhcCCCCcEEEEECCcC
Confidence 3 489999986 3456788889999999 899999999999999999986542 22 3468654
No 9
>PF00162 PGK: Phosphoglycerate kinase; InterPro: IPR001576 Phosphoglycerate kinase (2.7.2.3 from EC) (PGK) is an enzyme that catalyses the formation of ATP to ADP and vice versa. In the second step of the second phase in glycolysis, 1,3-diphosphoglycerate is converted to 3-phosphoglycerate, forming one molecule of ATP. If the reverse were to occur, one molecule of ADP would be formed. This reaction is essential in most cells for the generation of ATP in aerobes, for fermentation in anaerobes and for carbon fixation in plants. PGK is found in all living organisms and its sequence has been highly conserved throughout evolution. The enzyme exists as a monomer containing two nearly equal-sized domains that correspond to the N- and C-termini of the protein (the last 15 C-terminal residues loop back into the N-terminal domain). 3-phosphoglycerate (3-PG) binds to the N-terminal, while the nucleotide substrates, MgATP or MgADP, bind to the C-terminal domain of the enzyme. This extended two-domain structure is associated with large-scale 'hinge-bending' conformational changes, similar to those found in hexokinase []. At the core of each domain is a 6-stranded parallel beta-sheet surrounded by alpha helices. Domain 1 has a parallel beta-sheet of six strands with an order of 342156, while domain 2 has a parallel beta-sheet of six strands with an order of 321456. Analysis of the reversible unfolding of yeast phosphoglycerate kinase leads to the conclusion that the two lobes are capable of folding independently, consistent with the presence of intermediates on the folding pathway with a single domain folded []. Phosphoglycerate kinase (PGK) deficiency is associated with haemolytic anaemia and mental disorders in man []. This group represents a phosphoglycerate kinase.; GO: 0004618 phosphoglycerate kinase activity, 0006096 glycolysis; PDB: 1PHP_A 1V6S_A 2IE8_A 1ZMR_A 16PK_A 13PK_B 2P9Q_A 2P9T_A 2PAA_B 3OZA_A ....
Probab=100.00 E-value=9.3e-58 Score=455.46 Aligned_cols=197 Identities=28% Similarity=0.531 Sum_probs=175.6
Q ss_pred CCCCCCcEEEEEcCCccchHHHHHHHHHHhcCeEEEehHHHHHHHHHcCCCCCCcccccCchHHHHHHHHHHhhCCCeee
Q 014919 2 AKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAASDLIQFARDKHITIL 81 (416)
Q Consensus 2 ~~~~~~p~~~i~GGaKv~dki~~~~~l~~~~d~~~~gG~~a~~fl~a~g~~ig~s~~e~~~~~~a~~~~~~~~~~~~~i~ 81 (416)
+++|+||+++|+|||||||||++|+||+++||+|++||+||||||+|+|++||+|++|++.++.|++|+++++++|++|+
T Consensus 184 ~~~~~rP~vaIlGGaKvsdKi~vl~~Ll~kvD~liigG~ma~tFl~A~G~~iG~s~~e~~~i~~a~~ll~~~~~~g~~i~ 263 (384)
T PF00162_consen 184 LENPKRPFVAILGGAKVSDKIGVLENLLDKVDKLIIGGGMANTFLKAQGYEIGKSLVEEDLIEEAKELLEKAKDRGVKIV 263 (384)
T ss_dssp HHS-SSSEEEEEESS-HHHHHHHHHHHTTTSSEEEEETTHHHHHHHHTTHBBTTSSCHGGGHHHHHHHHHHHHHTT-EEE
T ss_pred hcCCCCCeEEEEeCCchHhHHHHHHHHHHHHHHHeeChhHHHHHHHHcCCcccccchhhhhHHHHHHHHHHHHhcCceEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeEEEecCC-CCCceeeecCCCCCCCCCccccChhhHHHHHHHhccCCeEEEeccceEEEeCCCCchHHHHHHHHHhh
Q 014919 82 YPKDFWCTKIH-HPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKV 160 (416)
Q Consensus 82 lP~D~~v~~~~-~~~~~~~~~~~~i~~~~~~~DiGp~T~~~~~~~~~~a~~i~wnGp~G~~e~~~f~~GT~~l~~~~a~~ 160 (416)
||+||+|++++ .+++.++++.++||++||++||||+|++.|++++..|+||+||||||+||+++|+.||++|+++++++
T Consensus 264 lPvD~~v~~~~~~~~~~~~~~~~~ip~~~~~lDIGp~Ti~~~~~~i~~aktv~wNGP~GvfE~~~F~~GT~~l~~aia~~ 343 (384)
T PF00162_consen 264 LPVDFVVADEFSDGARVEVVPADEIPDGWMILDIGPKTIELFSEIIKKAKTVFWNGPMGVFEIENFAEGTRALAKAIAKS 343 (384)
T ss_dssp --SEEEEESSSSTTSCEEEEETTGBCTTSEEEEE-HHHHHHHHHHHHT-SEEEEES-SS-TTSGGGCHHHHHHHHHHHHH
T ss_pred EEEEEeehhcccCCCCcEeccccccCCCCeeeccCHHHHHHHHHHHhCCCeEEEECCcccCchhhhhHHHHHHHHHHHhc
Confidence 99999999986 44556677889999999999999999999999999999999999999999999999999999999986
Q ss_pred hcCCCCeEEEcchh---HHHHhcccCCccceeeecCCceEeeeeccc
Q 014919 161 SQGTCNVTVIGSMA---CKAIAKVSSSIFGLNMVESGSAVWEFLKGR 204 (416)
Q Consensus 161 ~~~~~~~~v~gg~~---~~~~~~~~~~~~~~st~~GGGa~le~l~gr 204 (416)
+ ++||+||++ ++..+|+.++++|+|| ||||+|+||+|+
T Consensus 344 ---~-a~sivGGGdt~~a~~~~g~~~~~shvST--GGGA~L~~LeGk 384 (384)
T PF00162_consen 344 ---G-AFSIVGGGDTAAAIKKFGLADKFSHVST--GGGAFLEFLEGK 384 (384)
T ss_dssp ---T-SEEEEESHHHHHHHHHTTGGGGSSEEES--SSHHHHHHHTTS
T ss_pred ---C-CeEEEcccHHHHHHHhcCcccceeEEec--CcHHHHHHhcCC
Confidence 2 589999886 3446788889999999 899999999986
No 10
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=100.00 E-value=3.8e-39 Score=302.36 Aligned_cols=206 Identities=26% Similarity=0.370 Sum_probs=170.0
Q ss_pred eeecccCCCCc-ccccccCcc--------ccccccccCCCCCCeEEEEeccccHHHHHHHHhCCCCeEEEEch----HHH
Q 014919 199 EFLKGRMLPGV-SALDRAFPF--------DIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL----VTH 265 (416)
Q Consensus 199 e~l~gr~lPg~-~aL~~~~p~--------~~~~~~~f~~~~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~----~~~ 265 (416)
..++++..+++ ..+.+.+|. ..+|.+.|+++..+++||||||.|.+++.+|+++|+.+|+|||+ +.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~ 87 (227)
T COG0220 8 VRRRLRLTKAQKNALEDNWPRLGLDPQEEPGDWSALFGNNNAPIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAK 87 (227)
T ss_pred hhhhccccHHHHHHHHhcccccCCChhhccchHHHHhCCCCCcEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHH
Confidence 34455566665 445554431 35688899986568999999999999999999999999999994 678
Q ss_pred HHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeC
Q 014919 266 CRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD 345 (416)
Q Consensus 266 a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD 345 (416)
|++++.+.+++|+++++.||..+++.++ +++++|.|+++|||||||++|+|||++++.|++.++++|+|||.|+++||
T Consensus 88 ~l~k~~~~~l~Nlri~~~DA~~~l~~~~--~~~sl~~I~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD 165 (227)
T COG0220 88 ALKKIKELGLKNLRLLCGDAVEVLDYLI--PDGSLDKIYINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATD 165 (227)
T ss_pred HHHHHHHcCCCcEEEEcCCHHHHHHhcC--CCCCeeEEEEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEec
Confidence 8999999999999999999999987665 46799999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhCCCCceeeeccccccccCCCCCCCCCCCCCCCHHHHHHHHCCCCeEEEEEEeCC
Q 014919 346 IEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENSFGVRSDWEQHVIDRGAPMYRLMLSKPS 413 (416)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~T~~E~k~~~~G~~i~~~~~~k~~ 413 (416)
+++|+++|.....++..+....+.+ .+. |.+....++.|+||+++.++|++|+++.+++..
T Consensus 166 ~~~y~e~~~~~~~~~~~~~~~~~~~-----~~~--~~~~~~~~~~T~yE~k~~~~g~~i~~l~~~~~~ 226 (227)
T COG0220 166 NEEYFEWMMLEVLEHPPFLKFESED-----LHY--NLPPPDNNPVTEYEQKFRRLGHPVYDLEFIKKK 226 (227)
T ss_pred CHHHHHHHHHHHHhcchhhhccccc-----ccc--ccccccCCCCcHHHHHHHhCCCceEEEEEEecC
Confidence 9999999665555554443333333 121 233445689999999999999999999999875
No 11
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=100.00 E-value=2.6e-38 Score=291.87 Aligned_cols=184 Identities=26% Similarity=0.527 Sum_probs=149.6
Q ss_pred ccccccccCCCCCCeEEEEeccccHHHHHHHHhCCCCeEEEEch----HHHHHHHHHHhCCCcEEEEEcChhhhhhhhhc
Q 014919 219 DIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL----VTHCRDSLQLSGITNGYFIATNATSTFRSIVA 294 (416)
Q Consensus 219 ~~~~~~~f~~~~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~----~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~ 294 (416)
+.+|.+.|++ +.+++||||||.|.+++.+|+++|+.+|+|+|+ +.++.+++...+++|++++++|+..+++..+
T Consensus 7 ~~~~~~~f~~-~~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~- 84 (195)
T PF02390_consen 7 PLDWQEIFGN-DNPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLF- 84 (195)
T ss_dssp TTCHHHHHTS-CCEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHS-
T ss_pred ccCHHHHcCC-CCCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcc-
Confidence 5689999987 578999999999999999999999999999995 5667778888899999999999999877777
Q ss_pred cCCCceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhC-CCCceeeeccccc
Q 014919 295 SYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEY-GKGKLVLVQDECD 373 (416)
Q Consensus 295 ~~~~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~-~~~~~~~~~d~~~ 373 (416)
+++++|.|+++|||||+|++|+|||++++.|++.++++|+|||.|+++||+.+|+++|++.+.++ +.+......+.
T Consensus 85 -~~~~v~~i~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y~~~~~~~~~~~~~~f~~~~~~~~-- 161 (195)
T PF02390_consen 85 -PPGSVDRIYINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEYAEWMLEQFEESHPGFENIEESDD-- 161 (195)
T ss_dssp -TTTSEEEEEEES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHHHHHHHHHHHHHSTTEEEE-TESS--
T ss_pred -cCCchheEEEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhcCcCeEEcccCcc--
Confidence 57999999999999999999999999999999999999999999999999999999999999994 54432211110
Q ss_pred cccCCCCCCCCCCCCCCCHHHHHHHHCCCCeEEEEEEeC
Q 014919 374 TKTNQGGWLGENSFGVRSDWEQHVIDRGAPMYRLMLSKP 412 (416)
Q Consensus 374 ~~~~~~~~~~~~~~~~~T~~E~k~~~~G~~i~~~~~~k~ 412 (416)
.+++ +.++..+.|+||++|+++|++||+++|+|.
T Consensus 162 --~~~~---~~~~~~~~T~yE~k~~~~G~~i~~~~f~k~ 195 (195)
T PF02390_consen 162 --LHES---PFDDDYIPTKYERKWLAEGKPIYRLIFKKV 195 (195)
T ss_dssp --GGCS---CCCTTCCSSHHHHHHHHTTSS-EEEEEEE-
T ss_pred --cccC---CCCCCCCCCHHHHHHHHCCCCCEEEEEEEC
Confidence 1111 122368999999999999999999999984
No 12
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=100.00 E-value=3.4e-32 Score=251.23 Aligned_cols=184 Identities=22% Similarity=0.361 Sum_probs=151.4
Q ss_pred cccccccccCCCCCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHH----HHHHHHHHhCCCcEEEEEcChhhhhhhhh
Q 014919 218 FDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVT----HCRDSLQLSGITNGYFIATNATSTFRSIV 293 (416)
Q Consensus 218 ~~~~~~~~f~~~~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~----~a~~~a~~~~l~nv~f~~~Da~~l~~~~~ 293 (416)
++..|...|++ +.+++||||||+|.++..+|+++|+.+|+|+|++. .|.+++...+++|++++++|+.++++..+
T Consensus 5 ~~~~~~~~f~~-~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~ 83 (194)
T TIGR00091 5 DKPDFATVFGN-KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFF 83 (194)
T ss_pred cCCCHHHHhCC-CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhC
Confidence 34678888886 57899999999999999999999999999999644 45555666788899999999988754434
Q ss_pred ccCCCceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCCce-eeecccc
Q 014919 294 ASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKL-VLVQDEC 372 (416)
Q Consensus 294 ~~~~~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~~~-~~~~d~~ 372 (416)
+++++|.|+++|||||++.+|+|+|++++.++++++++|||||.|++.||+..|++++++.+.+++.+.. ..+.+
T Consensus 84 --~~~~~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~~~~~f~~~~~~~~-- 159 (194)
T TIGR00091 84 --PDGSLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLSENDLFENTSKSTD-- 159 (194)
T ss_pred --CCCceeEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhCCCeEecccccc--
Confidence 3579999999999999999999999999999999999999999999999999999999999999873321 11111
Q ss_pred ccccCCCCCCCCCCCCCCCHHHHHHHHCCCCeEEEEEEeC
Q 014919 373 DTKTNQGGWLGENSFGVRSDWEQHVIDRGAPMYRLMLSKP 412 (416)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~T~~E~k~~~~G~~i~~~~~~k~ 412 (416)
.... +....+++|+||+||+++|++||+++|+|+
T Consensus 160 ---~~~~---~~~~~~~~T~~E~~~~~~g~~i~~~~~~~~ 193 (194)
T TIGR00091 160 ---LNNS---PLSRPRNMTEYEQRFERLGHPVFDLCFERL 193 (194)
T ss_pred ---cCCC---cccccCcCCHHHHHHHHCCCCeEEEEEEEC
Confidence 1110 011224579999999999999999999986
No 13
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.97 E-value=8.8e-31 Score=261.99 Aligned_cols=170 Identities=19% Similarity=0.313 Sum_probs=146.3
Q ss_pred ccCCCCCCeEEEEeccccHHHHHHHHhCCCCeEEEEch----HHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCce
Q 014919 225 AYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL----VTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKL 300 (416)
Q Consensus 225 ~f~~~~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~----~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~ 300 (416)
.|...+++++||||||+|.++..+|+++|+.+|+|+|+ +..|.+++..++++|++++++|+..++ ..+ +++++
T Consensus 117 ~~~~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll-~~~--~~~s~ 193 (390)
T PRK14121 117 FISKNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLL-ELL--PSNSV 193 (390)
T ss_pred HhcCCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhh-hhC--CCCce
Confidence 34334678999999999999999999999999999996 556677777789999999999998874 334 58999
Q ss_pred eEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCCceeeeccccccccCCCC
Q 014919 301 ILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGG 380 (416)
Q Consensus 301 D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 380 (416)
|.|+++|||||+|++| ||++++.++++++|+|+|||.++++||+.+|+++|++.+.+.+.+....
T Consensus 194 D~I~lnFPdPW~KkrH--RRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y~~~~~e~~~~~~~~~~~~------------- 258 (390)
T PRK14121 194 EKIFVHFPVPWDKKPH--RRVISEDFLNEALRVLKPGGTLELRTDSELYFEFSLELFLKLPKAKIEI------------- 258 (390)
T ss_pred eEEEEeCCCCccccch--hhccHHHHHHHHHHHcCCCcEEEEEEECHHHHHHHHHHHHhCCCceeec-------------
Confidence 9999999999999988 7999999999999999999999999999999999999998875442111
Q ss_pred CCCCCCCCCCCHHHHHHHHCCCCeEEEEEEeCC
Q 014919 381 WLGENSFGVRSDWEQHVIDRGAPMYRLMLSKPS 413 (416)
Q Consensus 381 ~~~~~~~~~~T~~E~k~~~~G~~i~~~~~~k~~ 413 (416)
...++..+.|+||++|+++|++||+++|++..
T Consensus 259 -~~~~~~~i~TkyE~r~~~~G~~Iy~l~~~~~~ 290 (390)
T PRK14121 259 -KKNAQLEVSSKYEDRWKKQNKDIYDLRIYNLE 290 (390)
T ss_pred -ccCCCCCCCCHHHHHHHHCCCCEEEEEEEeCC
Confidence 11235588999999999999999999999864
No 14
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.97 E-value=1.7e-30 Score=271.58 Aligned_cols=257 Identities=16% Similarity=0.222 Sum_probs=183.8
Q ss_pred ccccChhhHHHHHHHhccCCeEEEeccce--EEEeCCCCchHHHHHHHHHhhhcCCCCeEEEcchhHHHHhcccCCc---
Q 014919 111 PVDIGPRSVEEITSTITKCKKVIWVGPVK--FRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVSSSI--- 185 (416)
Q Consensus 111 ~~DiGp~T~~~~~~~~~~a~~i~wnGp~G--~~e~~~f~~GT~~l~~~~a~~~~~~~~~~v~gg~~~~~~~~~~~~~--- 185 (416)
.++.|+...+.|...+..+.+++ -|-| ++|.. + .....+.+.+.. .+ +..+.- ...+.|. +.+
T Consensus 237 AL~gg~dGl~~~~~il~~a~~~L--~~gG~l~lEig-~-~q~~~v~~~~~~---~g--~~~~~~--~~D~~g~-~R~v~~ 304 (506)
T PRK01544 237 ALFAEEDGLQAYFIIAENAKQFL--KPNGKIILEIG-F-KQEEAVTQIFLD---HG--YNIESV--YKDLQGH-SRVILI 304 (506)
T ss_pred HhcCCccHHHHHHHHHHHHHHhc--cCCCEEEEEEC-C-chHHHHHHHHHh---cC--CCceEE--EecCCCC-ceEEEe
Confidence 46778888888888888877654 4444 55654 3 233344333322 11 111100 0111121 111
Q ss_pred cceeeecCCceEeeeeccc-CCCCcccc-cccCc-cccccccccCCCCCCeEEEEeccccHHHHHHHHhCCCCeEEEEch
Q 014919 186 FGLNMVESGSAVWEFLKGR-MLPGVSAL-DRAFP-FDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL 262 (416)
Q Consensus 186 ~~~st~~GGGa~le~l~gr-~lPg~~aL-~~~~p-~~~~~~~~f~~~~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~ 262 (416)
+.+.. +-++...+|+ ..+.++++ ...+| +.+.+...|+. +.+++||||||+|.++..+|+++|+.+|+|+|+
T Consensus 305 ~~~~~----~rs~~rr~g~~~~~~q~~~~e~~~p~~~i~~eklf~~-~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~ 379 (506)
T PRK01544 305 SPINL----NRSYARRIGKSLSGVQQNLLDNELPKYLFSKEKLVNE-KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEV 379 (506)
T ss_pred ccccC----CcceeccCCCCCCHHHHHHHHhhhhhhCCCHHHhCCC-CCceEEEECCCchHHHHHHHHhCCCCCEEEEEe
Confidence 11111 2245555664 44555554 44455 34566667765 689999999999999999999999999999995
Q ss_pred ----HHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCc
Q 014919 263 ----VTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDG 338 (416)
Q Consensus 263 ----~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG 338 (416)
+.++++++.+.+++|+++++.|+..+ ...| +++++|.|+++|||||||++|+|||++++.|++.++++|||||
T Consensus 380 ~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~-~~~~--~~~sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG 456 (506)
T PRK01544 380 YLNGVANVLKLAGEQNITNFLLFPNNLDLI-LNDL--PNNSLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNG 456 (506)
T ss_pred eHHHHHHHHHHHHHcCCCeEEEEcCCHHHH-HHhc--CcccccEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCC
Confidence 56677777788999999999998766 4556 5889999999999999999999999999999999999999999
Q ss_pred EEEEEeCcHHHHHHHHHHHHhCCCCceeeeccccccccCCCCCCCCCCCCCCCHHHHHH
Q 014919 339 KVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENSFGVRSDWEQHV 397 (416)
Q Consensus 339 ~l~l~tD~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~T~~E~k~ 397 (416)
.++++||+.+|+++|++.+.+++.+.. ... ..|+..++.++.|+||+|+
T Consensus 457 ~i~~~TD~~~y~~~~~~~~~~~~~f~~-~~~---------~~~~~~~~~~~~T~yE~k~ 505 (506)
T PRK01544 457 NLVFASDIENYFYEAIELIQQNGNFEI-INK---------NDYLKPHDNYVITKYHQKA 505 (506)
T ss_pred EEEEEcCCHHHHHHHHHHHHhCCCeEe-ccc---------ccccCCCCCCCCchhccCc
Confidence 999999999999999999999874421 111 1233345678999999986
No 15
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.92 E-value=5.1e-24 Score=197.95 Aligned_cols=169 Identities=22% Similarity=0.391 Sum_probs=142.7
Q ss_pred ccccccccccCCCCCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHH----HHHHHhCCCcEEEEEcCh-hhhhhh
Q 014919 217 PFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCR----DSLQLSGITNGYFIATNA-TSTFRS 291 (416)
Q Consensus 217 p~~~~~~~~f~~~~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~----~~a~~~~l~nv~f~~~Da-~~l~~~ 291 (416)
+....|.+.|+. ++..|||||||+|.++..+|+..|..+++|+|++..++ +++...+++|+.++++|+ ..+ +.
T Consensus 28 ~~~~~~~~~~~~-~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l-~~ 105 (202)
T PRK00121 28 PAPLDWAELFGN-DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVL-LD 105 (202)
T ss_pred CCCCCHHHHcCC-CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHH-HH
Confidence 356789999987 68999999999999999999999999999999765544 444455778999999999 554 33
Q ss_pred hhccCCCceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCCceeeeccc
Q 014919 292 IVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDE 371 (416)
Q Consensus 292 ~~~~~~~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~~~~~~~d~ 371 (416)
.+ ++++||.|+++||+||.+..|++++...+.++++++++|||||.|++.+++..+..++++.++++++... +.
T Consensus 106 ~~--~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~g~~~~--~~-- 179 (202)
T PRK00121 106 MF--PDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSAEGGFLV--SE-- 179 (202)
T ss_pred Hc--CccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHhCccccc--cc--
Confidence 33 4788999999999999988888888888899999999999999999999999999999999999997532 11
Q ss_pred cccccCCCCCCCCCCCCCCCHHHHHHHH
Q 014919 372 CDTKTNQGGWLGENSFGVRSDWEQHVID 399 (416)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~T~~E~k~~~ 399 (416)
...|..+++..+.|+||++|+.
T Consensus 180 ------~~~~~~~~~~~~~~~~~~~~~~ 201 (202)
T PRK00121 180 ------AGDYVPRPEGRPMTEYERKGLR 201 (202)
T ss_pred ------chhhcccCccCCCcHHHHHhhc
Confidence 2356778899999999999975
No 16
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=99.76 E-value=1.6e-18 Score=156.12 Aligned_cols=189 Identities=22% Similarity=0.361 Sum_probs=143.5
Q ss_pred ccccccccccCCC-----CCCeEEEEeccccHHHHHHHHhCCCCeEEEEch----HHHHHHHHH-------HhCCCcEEE
Q 014919 217 PFDIDWSAAYHDP-----AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL----VTHCRDSLQ-------LSGITNGYF 280 (416)
Q Consensus 217 p~~~~~~~~f~~~-----~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~----~~~a~~~a~-------~~~l~nv~f 280 (416)
|...+|...|+.- ....+.|||||.|.+++.|+..+|+..++|+|+ +....++++ ...++|+.+
T Consensus 42 P~~mDWS~~yp~f~~~~~~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~v 121 (249)
T KOG3115|consen 42 PQEMDWSKYYPDFRRALNKKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISV 121 (249)
T ss_pred hHhCcHHHhhhhhhhhccccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhcccccccccccee
Confidence 4456787776542 236799999999999999999999999999996 222222222 123789999
Q ss_pred EEcChhhhhhhhhccCCCceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhC
Q 014919 281 IATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEY 360 (416)
Q Consensus 281 ~~~Da~~l~~~~~~~~~~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~ 360 (416)
++.++...++++| ..+.++-.++.||||++|.+.+|+|++...++.++.-+|++||.++..||+.++.+||...|+++
T Consensus 122 lr~namk~lpn~f--~kgqLskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitDv~elh~wm~~~~e~h 199 (249)
T KOG3115|consen 122 LRTNAMKFLPNFF--EKGQLSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITDVKELHEWMVKHLEEH 199 (249)
T ss_pred eeccchhhccchh--hhcccccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEeeHHHHHHHHHHHHHhC
Confidence 9999999888888 67889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeeccccccccCCCCCCCCCCCCCCCHHHHHHHHCCCCeEEEEEEeCCC
Q 014919 361 GKGKLVLVQDECDTKTNQGGWLGENSFGVRSDWEQHVIDRGAPMYRLMLSKPSC 414 (416)
Q Consensus 361 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~T~~E~k~~~~G~~i~~~~~~k~~~ 414 (416)
+.+.. .++.. +.+.+ ......-.|+.-++....|-..+.-+|+++..
T Consensus 200 plfe~-lt~ee----~~~d~--~v~~~~~~teeg~kv~r~~g~~f~a~f~r~~~ 246 (249)
T KOG3115|consen 200 PLFER-LTEEE----EENDP--CVELLSNATEEGKKVARNGGKKFVAVFRRIPN 246 (249)
T ss_pred cHhhh-cchhh----hcCCc--chhhhhhhhhhcccccccCCceeeeeeeeccC
Confidence 98742 22110 11100 00011223555556666666777777887754
No 17
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.60 E-value=4.5e-15 Score=140.21 Aligned_cols=101 Identities=18% Similarity=0.264 Sum_probs=84.2
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHH----HHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVT----HCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 305 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~----~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~ 305 (416)
.+..|||||||||.+++.+++..+..+++|+|++. .|++++.+.+..|++|+++||+++ |+++++||.+++
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~L-----Pf~D~sFD~vt~ 125 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENL-----PFPDNSFDAVTI 125 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhC-----CCCCCccCEEEe
Confidence 37899999999999999999999999999999654 455555556677899999999998 668999999999
Q ss_pred ECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919 306 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 343 (416)
Q Consensus 306 ~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~ 343 (416)
.|.--+..+. +..|+|++|+|||||++.+.
T Consensus 126 ~fglrnv~d~--------~~aL~E~~RVlKpgG~~~vl 155 (238)
T COG2226 126 SFGLRNVTDI--------DKALKEMYRVLKPGGRLLVL 155 (238)
T ss_pred eehhhcCCCH--------HHHHHHHHHhhcCCeEEEEE
Confidence 8765443221 58999999999999987763
No 18
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.49 E-value=9.7e-14 Score=131.72 Aligned_cols=101 Identities=17% Similarity=0.265 Sum_probs=69.4
Q ss_pred CCCeEEEEeccccHHHHHHHHhC-CCCeEEEEchHHH----HHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLELVTH----CRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS 304 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~-p~~~~iGvD~~~~----a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~ 304 (416)
.+..|||+|||||..+..++++. |+.+++|+|++.. |.+++...+..|++++++|++++ |+++++||.|+
T Consensus 47 ~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~l-----p~~d~sfD~v~ 121 (233)
T PF01209_consen 47 PGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDL-----PFPDNSFDAVT 121 (233)
T ss_dssp S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB-------S-TT-EEEEE
T ss_pred CCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHh-----cCCCCceeEEE
Confidence 46799999999999999999874 6789999997554 45555556677999999999998 55789999999
Q ss_pred EECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919 305 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 343 (416)
Q Consensus 305 ~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~ 343 (416)
+.|.-....+ .+..+++++|+|||||++.+.
T Consensus 122 ~~fglrn~~d--------~~~~l~E~~RVLkPGG~l~il 152 (233)
T PF01209_consen 122 CSFGLRNFPD--------RERALREMYRVLKPGGRLVIL 152 (233)
T ss_dssp EES-GGG-SS--------HHHHHHHHHHHEEEEEEEEEE
T ss_pred HHhhHHhhCC--------HHHHHHHHHHHcCCCeEEEEe
Confidence 8874322111 147899999999999998864
No 19
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.48 E-value=1.2e-13 Score=110.73 Aligned_cols=94 Identities=14% Similarity=0.200 Sum_probs=74.4
Q ss_pred EEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhC-CCcEEEEEcChhhhhhhhhccCCCceeEEEEECCCCCCC
Q 014919 235 VDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSG-ITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFN 313 (416)
Q Consensus 235 LDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~-l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdpw~k 313 (416)
||||||+|.++..++++ +..+++|+|.+..+++.+++.. ..++.+.++|+.++ |+++++||.|+++..-.|.
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l-----~~~~~sfD~v~~~~~~~~~- 73 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDL-----PFPDNSFDVVFSNSVLHHL- 73 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSS-----SS-TT-EEEEEEESHGGGS-
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhC-----ccccccccccccccceeec-
Confidence 89999999999999998 8899999999888888776644 34688999999887 5578999999988554443
Q ss_pred CcchhhhhhhHHHHHHHHhhccCCcEEEE
Q 014919 314 RPEHRWRMVQRSLVEAVSDLLVHDGKVFL 342 (416)
Q Consensus 314 ~~h~krRl~~~~~l~~i~r~LkpgG~l~l 342 (416)
. -...+++++.|+|||||.++|
T Consensus 74 -~------~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 74 -E------DPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp -S------HHHHHHHHHHHHEEEEEEEEE
T ss_pred -c------CHHHHHHHHHHHcCcCeEEeC
Confidence 1 124899999999999999986
No 20
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.45 E-value=1.2e-12 Score=120.16 Aligned_cols=115 Identities=19% Similarity=0.185 Sum_probs=91.0
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHH----HHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEE
Q 014919 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVT----HCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 306 (416)
Q Consensus 231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~----~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~ 306 (416)
+.+|||||||+|..++.+|++.|+.+++|+|.+. .|.++++..+++|++++++|+.++ +. .++||.|+++
T Consensus 46 g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~-----~~-~~~fDlV~~~ 119 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEF-----GQ-EEKFDVVTSR 119 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhC-----CC-CCCccEEEEc
Confidence 6889999999999999999999999999999754 455556667888899999999876 32 5689999986
Q ss_pred CCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCCc
Q 014919 307 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGK 364 (416)
Q Consensus 307 fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~~ 364 (416)
.-.+ .+.+++.+++.|+|||.+++.. ...+...+.+..+++|+..
T Consensus 120 ~~~~------------~~~~l~~~~~~LkpGG~lv~~~-~~~~~~~l~~~~~~~~~~~ 164 (187)
T PRK00107 120 AVAS------------LSDLVELCLPLLKPGGRFLALK-GRDPEEEIAELPKALGGKV 164 (187)
T ss_pred cccC------------HHHHHHHHHHhcCCCeEEEEEe-CCChHHHHHHHHHhcCceE
Confidence 3111 1489999999999999999863 3445666666677778764
No 21
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.45 E-value=4e-13 Score=111.98 Aligned_cols=104 Identities=19% Similarity=0.288 Sum_probs=76.2
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHH----HHHHHHHhC-CCcEEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTH----CRDSLQLSG-ITNGYFIATNATSTFRSIVASYPGKLILVSI 305 (416)
Q Consensus 231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~----a~~~a~~~~-l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~ 305 (416)
+.+|||||||+|.++..+++++|..+++|+|+++. |++++.+.+ .+|++|+++|+ .... . ..+.||.|++
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~---~-~~~~~D~v~~ 76 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDP---D-FLEPFDLVIC 76 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGT---T-TSSCEEEEEE
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCc---c-cCCCCCEEEE
Confidence 57899999999999999999899999999997554 444443333 47899999999 3211 1 2467999998
Q ss_pred EC-CCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919 306 QC-PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 344 (416)
Q Consensus 306 ~f-pdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t 344 (416)
.. ...+. ..+. ...++++.+.+.|+|||++++.+
T Consensus 77 ~~~~~~~~-~~~~----~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 77 SGFTLHFL-LPLD----ERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp CSGSGGGC-CHHH----HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCccccc-cchh----HHHHHHHHHHHhcCCCcEEEEEE
Confidence 75 21111 1111 12478999999999999999864
No 22
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.45 E-value=7.1e-13 Score=128.00 Aligned_cols=101 Identities=14% Similarity=0.105 Sum_probs=80.6
Q ss_pred CCCeEEEEeccccHHHHHHHHhC-CCCeEEEEchHHHHHHHHHHh-------CCCcEEEEEcChhhhhhhhhccCCCcee
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLELVTHCRDSLQLS-------GITNGYFIATNATSTFRSIVASYPGKLI 301 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~-p~~~~iGvD~~~~a~~~a~~~-------~l~nv~f~~~Da~~l~~~~~~~~~~s~D 301 (416)
.+.+|||||||+|.++..++++. |+.+++|+|++..+++.+++. ..+|++++++|+.++ |+++++||
T Consensus 73 ~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~l-----p~~~~sfD 147 (261)
T PLN02233 73 MGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDL-----PFDDCYFD 147 (261)
T ss_pred CCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccC-----CCCCCCEe
Confidence 36789999999999999999874 678999999877766655422 246899999999887 55688999
Q ss_pred EEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919 302 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 343 (416)
Q Consensus 302 ~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~ 343 (416)
.|++++.-.+..++ ..++++++|+|||||++.+.
T Consensus 148 ~V~~~~~l~~~~d~--------~~~l~ei~rvLkpGG~l~i~ 181 (261)
T PLN02233 148 AITMGYGLRNVVDR--------LKAMQEMYRVLKPGSRVSIL 181 (261)
T ss_pred EEEEecccccCCCH--------HHHHHHHHHHcCcCcEEEEE
Confidence 99987654443221 48899999999999999885
No 23
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.44 E-value=1.4e-12 Score=115.45 Aligned_cols=105 Identities=15% Similarity=0.262 Sum_probs=80.4
Q ss_pred CCCeEEEEeccccHHHHHHH-HhCCCCeEEEEchHHHHH----HHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919 230 AQPLVVDIGSGNGLFLLGMA-RKRKDLNFLGLELVTHCR----DSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS 304 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA-~~~p~~~~iGvD~~~~a~----~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~ 304 (416)
++.+|||+|||+|.++..++ +.+|..+++|+|++..++ +++++.+++|++|+++|+.++ +..+ . +.||.|+
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l-~~~~--~-~~~D~I~ 78 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDL-PQEL--E-EKFDIII 78 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCG-CGCS--S-TTEEEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhcc-cccc--C-CCeeEEE
Confidence 46899999999999999999 568899999999765544 444557888999999999985 3212 2 7899999
Q ss_pred EECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCc
Q 014919 305 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI 346 (416)
Q Consensus 305 ~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~ 346 (416)
++.+..|... ...+++.+.+.|+++|.+++..-.
T Consensus 79 ~~~~l~~~~~--------~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 79 SNGVLHHFPD--------PEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp EESTGGGTSH--------HHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EcCchhhccC--------HHHHHHHHHHHcCCCcEEEEEECC
Confidence 8844322211 137899999999999999986543
No 24
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.43 E-value=2.1e-12 Score=124.17 Aligned_cols=98 Identities=14% Similarity=0.015 Sum_probs=82.5
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCC
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN 309 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpd 309 (416)
.+.+|||||||+|.++..+++++|+.+++|+|++..+++.+++. +++++++|+.++ + ++++||.|++++.-
T Consensus 29 ~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~---~~~~~~~d~~~~-----~-~~~~fD~v~~~~~l 99 (255)
T PRK14103 29 RARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER---GVDARTGDVRDW-----K-PKPDTDVVVSNAAL 99 (255)
T ss_pred CCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc---CCcEEEcChhhC-----C-CCCCceEEEEehhh
Confidence 46899999999999999999999999999999988888877553 688999998765 1 35789999998776
Q ss_pred CCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919 310 PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 344 (416)
Q Consensus 310 pw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t 344 (416)
.|..+. ..++++++++|||||.+.+..
T Consensus 100 ~~~~d~--------~~~l~~~~~~LkpgG~l~~~~ 126 (255)
T PRK14103 100 QWVPEH--------ADLLVRWVDELAPGSWIAVQV 126 (255)
T ss_pred hhCCCH--------HHHHHHHHHhCCCCcEEEEEc
Confidence 665321 378999999999999999864
No 25
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.36 E-value=3.9e-12 Score=122.24 Aligned_cols=100 Identities=17% Similarity=0.168 Sum_probs=84.1
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCC
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN 309 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpd 309 (416)
.+.+|||||||+|.++..+++++|+.+++|+|++..+++.+++. .+|+.|+.+|+..+. ++++||.|++++..
T Consensus 31 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~-~~~~~~~~~d~~~~~------~~~~fD~v~~~~~l 103 (258)
T PRK01683 31 NPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSR-LPDCQFVEADIASWQ------PPQALDLIFANASL 103 (258)
T ss_pred CCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHh-CCCCeEEECchhccC------CCCCccEEEEccCh
Confidence 46899999999999999999999999999999988888776543 578999999987651 35689999998777
Q ss_pred CCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919 310 PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 344 (416)
Q Consensus 310 pw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t 344 (416)
.|.++. ..++++++++|||||.+.+.+
T Consensus 104 ~~~~d~--------~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 104 QWLPDH--------LELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred hhCCCH--------HHHHHHHHHhcCCCcEEEEEC
Confidence 775432 378999999999999999875
No 26
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.36 E-value=1.7e-11 Score=112.21 Aligned_cols=118 Identities=19% Similarity=0.201 Sum_probs=89.0
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHH----HHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCR----DSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 305 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~----~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~ 305 (416)
.+.+|||||||+|.+++.+++++|+.+++|+|++..++ ++++..++.+++++++|+... + ++++|.|++
T Consensus 31 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~----~---~~~~D~v~~ 103 (187)
T PRK08287 31 RAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIE----L---PGKADAIFI 103 (187)
T ss_pred CCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhh----c---CcCCCEEEE
Confidence 36789999999999999999999999999999765544 444455677899999987432 1 467999988
Q ss_pred ECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCCce
Q 014919 306 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKL 365 (416)
Q Consensus 306 ~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~~~ 365 (416)
..... + .+.+++.+.+.|+|||++++..-...-..+..+.++++++...
T Consensus 104 ~~~~~-----~------~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g~~~~ 152 (187)
T PRK08287 104 GGSGG-----N------LTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKCGVSEL 152 (187)
T ss_pred CCCcc-----C------HHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHCCCCcc
Confidence 64321 1 1478899999999999998864233445667788888887543
No 27
>PLN02244 tocopherol O-methyltransferase
Probab=99.35 E-value=5.8e-12 Score=126.20 Aligned_cols=101 Identities=20% Similarity=0.238 Sum_probs=79.4
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHH----HHHHhCC-CcEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRD----SLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVS 304 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~----~a~~~~l-~nv~f~~~Da~~l~~~~~~~~~~s~D~v~ 304 (416)
.+.+|||||||+|.++..|++++ +.+++|+|++..+++ +++..++ ++++|+++|+.++ |+++++||.|+
T Consensus 118 ~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~-----~~~~~~FD~V~ 191 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQ-----PFEDGQFDLVW 191 (340)
T ss_pred CCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccC-----CCCCCCccEEE
Confidence 46789999999999999999987 789999997655443 4444565 4799999999876 44688999998
Q ss_pred EECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919 305 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 344 (416)
Q Consensus 305 ~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t 344 (416)
+.....+..+. ..++++++|+|||||.|++.+
T Consensus 192 s~~~~~h~~d~--------~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 192 SMESGEHMPDK--------RKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred ECCchhccCCH--------HHHHHHHHHHcCCCcEEEEEE
Confidence 87544332221 378999999999999999864
No 28
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.35 E-value=8.1e-12 Score=112.92 Aligned_cols=106 Identities=19% Similarity=0.339 Sum_probs=80.5
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHH----HHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEE
Q 014919 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRD----SLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 306 (416)
Q Consensus 231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~----~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~ 306 (416)
...+||+|||+|..++.++++.|+.+++++|++..|.+ +++.+++++++++++|..+. + .+++||.|++|
T Consensus 32 ~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~----~--~~~~fD~Iv~N 105 (170)
T PF05175_consen 32 GGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEA----L--PDGKFDLIVSN 105 (170)
T ss_dssp TCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTT----C--CTTCEEEEEE-
T ss_pred CCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCcccccccccccccc----c--cccceeEEEEc
Confidence 67899999999999999999999989999997655544 45567788899999998654 1 36899999998
Q ss_pred CCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeC
Q 014919 307 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD 345 (416)
Q Consensus 307 fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD 345 (416)
.|++...+.. ..+..++++...+.|+|||.+++...
T Consensus 106 --PP~~~~~~~~-~~~~~~~i~~a~~~Lk~~G~l~lv~~ 141 (170)
T PF05175_consen 106 --PPFHAGGDDG-LDLLRDFIEQARRYLKPGGRLFLVIN 141 (170)
T ss_dssp ----SBTTSHCH-HHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred --cchhcccccc-hhhHHHHHHHHHHhccCCCEEEEEee
Confidence 3443332211 12346899999999999999977643
No 29
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.34 E-value=8.8e-12 Score=117.65 Aligned_cols=102 Identities=15% Similarity=0.180 Sum_probs=79.9
Q ss_pred CCCeEEEEeccccHHHHHHHHhC-CCCeEEEEchHHHHH----HHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLELVTHCR----DSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS 304 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~-p~~~~iGvD~~~~a~----~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~ 304 (416)
.+.+|||+|||+|.++..+++.. |..+++|+|++..+. +++...+++|+.++++|+..+ +++++++|.|+
T Consensus 45 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~-----~~~~~~fD~V~ 119 (231)
T TIGR02752 45 AGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMEL-----PFDDNSFDYVT 119 (231)
T ss_pred CCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcC-----CCCCCCccEEE
Confidence 36799999999999999999885 678999999765544 344445677899999999875 33568999999
Q ss_pred EECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919 305 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 344 (416)
Q Consensus 305 ~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t 344 (416)
+.+.-.|.... ..+++++.++|+|||.+++..
T Consensus 120 ~~~~l~~~~~~--------~~~l~~~~~~Lk~gG~l~~~~ 151 (231)
T TIGR02752 120 IGFGLRNVPDY--------MQVLREMYRVVKPGGKVVCLE 151 (231)
T ss_pred EecccccCCCH--------HHHHHHHHHHcCcCeEEEEEE
Confidence 87654443221 378999999999999998764
No 30
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.34 E-value=9.9e-12 Score=116.94 Aligned_cols=102 Identities=15% Similarity=0.174 Sum_probs=83.9
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCCC
Q 014919 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNP 310 (416)
Q Consensus 231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdp 310 (416)
..+|||||||+|.++..+++..|..+++|+|++..+.+.++....+|+.++.+|+.+. ++++++||.|++++.-.
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~fD~vi~~~~l~ 109 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKL-----PLEDSSFDLIVSNLALQ 109 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhC-----CCCCCceeEEEEhhhhh
Confidence 4689999999999999999999999999999988777666554446899999999876 33578899999887666
Q ss_pred CCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeC
Q 014919 311 DFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD 345 (416)
Q Consensus 311 w~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD 345 (416)
|..+. ..+++++.++|+|||.+++.+.
T Consensus 110 ~~~~~--------~~~l~~~~~~L~~~G~l~~~~~ 136 (240)
T TIGR02072 110 WCDDL--------SQALSELARVLKPGGLLAFSTF 136 (240)
T ss_pred hccCH--------HHHHHHHHHHcCCCcEEEEEeC
Confidence 54322 3789999999999999998753
No 31
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.34 E-value=6e-12 Score=122.20 Aligned_cols=107 Identities=14% Similarity=0.207 Sum_probs=85.2
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCC---CeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEE
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRKD---LNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 306 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p~---~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~ 306 (416)
...+|||||||+|.++..+++..|. .+++|+|++..+++.+.+. .+|+.|+++|+.++ |+++++||.|+..
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~-~~~~~~~~~d~~~l-----p~~~~sfD~I~~~ 158 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKR-YPQVTFCVASSHRL-----PFADQSLDAIIRI 158 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHh-CCCCeEEEeecccC-----CCcCCceeEEEEe
Confidence 3578999999999999999988774 3799999999888877543 46899999998876 4468899999877
Q ss_pred CCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHH
Q 014919 307 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQF 357 (416)
Q Consensus 307 fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~ 357 (416)
+. | .++++++|+|||||.|++.+....+..++.+.+
T Consensus 159 ~~-~--------------~~~~e~~rvLkpgG~li~~~p~~~~l~el~~~~ 194 (272)
T PRK11088 159 YA-P--------------CKAEELARVVKPGGIVITVTPGPRHLFELKGLI 194 (272)
T ss_pred cC-C--------------CCHHHHHhhccCCCEEEEEeCCCcchHHHHHHh
Confidence 53 2 345789999999999999887666555555443
No 32
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.33 E-value=5.1e-12 Score=121.02 Aligned_cols=131 Identities=14% Similarity=0.170 Sum_probs=90.7
Q ss_pred EeeeecccCCCCcccccccCccccccccccCCCCCCeEEEEeccccHHHHHHHH--hCCCCeEEEEchHHHHHHHH----
Q 014919 197 VWEFLKGRMLPGVSALDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMAR--KRKDLNFLGLELVTHCRDSL---- 270 (416)
Q Consensus 197 ~le~l~gr~lPg~~aL~~~~p~~~~~~~~f~~~~~~~vLDIGCG~G~~~~~lA~--~~p~~~~iGvD~~~~a~~~a---- 270 (416)
.++-+..+..|+++.+..... .+...+.. ++.+|||||||+|..+..+++ .+|+.+++|+|.+..+++.+
T Consensus 27 ~yd~~~~~~~p~y~~~~~~~~---~~~~~~~~-~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~ 102 (247)
T PRK15451 27 VFPDMIQRSVPGYSNIISMIG---MLAERFVQ-PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHI 102 (247)
T ss_pred hhhhHHHhcCCChHHHHHHHH---HHHHHhCC-CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHH
Confidence 466666778888866543321 12222222 368899999999999999998 46899999999766555544
Q ss_pred HHhCCC-cEEEEEcChhhhhhhhhccCCCceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919 271 QLSGIT-NGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 344 (416)
Q Consensus 271 ~~~~l~-nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t 344 (416)
...+.. +++++++|+.++ + ...+|.|++++...+.... . ...++++++++|||||.|++..
T Consensus 103 ~~~~~~~~v~~~~~d~~~~-----~--~~~~D~vv~~~~l~~l~~~-~-----~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 103 DAYKAPTPVDVIEGDIRDI-----A--IENASMVVLNFTLQFLEPS-E-----RQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred HhcCCCCCeEEEeCChhhC-----C--CCCCCEEehhhHHHhCCHH-H-----HHHHHHHHHHhcCCCCEEEEEE
Confidence 334443 799999998876 2 2357888876544332111 1 1478999999999999999863
No 33
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.33 E-value=1.9e-11 Score=111.73 Aligned_cols=110 Identities=19% Similarity=0.189 Sum_probs=82.8
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHH----HHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEE
Q 014919 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTH----CRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 306 (416)
Q Consensus 231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~----a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~ 306 (416)
+.++||||||+|.++..+|...|+.+++|+|.+.. +.+++++.+++|++++++|+.++ + ..++||.|+++
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~-----~-~~~~fD~I~s~ 116 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDF-----Q-HEEQFDVITSR 116 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhc-----c-ccCCccEEEeh
Confidence 67999999999999999999999999999997654 34445566788999999999875 1 25789999876
Q ss_pred CCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHh
Q 014919 307 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLE 359 (416)
Q Consensus 307 fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~ 359 (416)
. + ++ .+.+++.+.++|+|||.+++.... ..........++
T Consensus 117 ~---~----~~-----~~~~~~~~~~~LkpgG~lvi~~~~-~~~~~~~~~~e~ 156 (181)
T TIGR00138 117 A---L----AS-----LNVLLELTLNLLKVGGYFLAYKGK-KYLDEIEEAKRK 156 (181)
T ss_pred h---h----hC-----HHHHHHHHHHhcCCCCEEEEEcCC-CcHHHHHHHHHh
Confidence 3 2 11 147889999999999999987443 233334444344
No 34
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.32 E-value=2.6e-11 Score=110.34 Aligned_cols=124 Identities=18% Similarity=0.214 Sum_probs=89.1
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHH----HHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEE
Q 014919 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDS----LQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 306 (416)
Q Consensus 231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~----a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~ 306 (416)
..+|||+|||+|.++..+++..+ +++|+|++..+.+. ++.++. +++++++|+.+. ..++||.|+++
T Consensus 20 ~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~-------~~~~fD~Vi~n 89 (179)
T TIGR00537 20 PDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLNNV-GLDVVMTDLFKG-------VRGKFDVILFN 89 (179)
T ss_pred CCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcCC-ceEEEEcccccc-------cCCcccEEEEC
Confidence 56899999999999999999876 89999986655444 333444 689999997654 24589999987
Q ss_pred CCCCCCCCcchh---------------hhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCCcee
Q 014919 307 CPNPDFNRPEHR---------------WRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLV 366 (416)
Q Consensus 307 fpdpw~k~~h~k---------------rRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~~~~ 366 (416)
.||+...... .+....++++++.++|+|||.+++.+....-..++.+.+++.++....
T Consensus 90 --~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~gf~~~~ 162 (179)
T TIGR00537 90 --PPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDERGFRYEI 162 (179)
T ss_pred --CCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHhCCCeEEE
Confidence 3443221110 012246899999999999999998764443355678888888876543
No 35
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.32 E-value=9.6e-12 Score=119.08 Aligned_cols=101 Identities=12% Similarity=0.081 Sum_probs=81.1
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCC
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN 309 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpd 309 (416)
....|||||||+|.++..+++. ..+++|+|++..+++.++++. .+..++++|+..+ |+++++||.|+.+++-
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~l~~a~~~~-~~~~~~~~d~~~~-----~~~~~~fD~V~s~~~l 113 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLAQARQKD-AADHYLAGDIESL-----PLATATFDLAWSNLAV 113 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhC-CCCCEEEcCcccC-----cCCCCcEEEEEECchh
Confidence 3578999999999999988875 579999999888887776543 3467889999876 3357899999998776
Q ss_pred CCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCc
Q 014919 310 PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI 346 (416)
Q Consensus 310 pw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~ 346 (416)
.|..+. ..++.++.++|+|||.+++.+-.
T Consensus 114 ~~~~d~--------~~~l~~~~~~Lk~gG~l~~~~~~ 142 (251)
T PRK10258 114 QWCGNL--------STALRELYRVVRPGGVVAFTTLV 142 (251)
T ss_pred hhcCCH--------HHHHHHHHHHcCCCeEEEEEeCC
Confidence 664332 37899999999999999998633
No 36
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.32 E-value=1.1e-11 Score=117.98 Aligned_cols=101 Identities=12% Similarity=0.161 Sum_probs=77.2
Q ss_pred CCCeEEEEeccccHHHHHHHHh--CCCCeEEEEchHHHHHHHHH----HhC-CCcEEEEEcChhhhhhhhhccCCCceeE
Q 014919 230 AQPLVVDIGSGNGLFLLGMARK--RKDLNFLGLELVTHCRDSLQ----LSG-ITNGYFIATNATSTFRSIVASYPGKLIL 302 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~--~p~~~~iGvD~~~~a~~~a~----~~~-l~nv~f~~~Da~~l~~~~~~~~~~s~D~ 302 (416)
.+.+|||||||+|.++..++++ +|+++++|+|++..+++.++ ..+ ..+++++++|+..+ + ...+|.
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~-----~--~~~~d~ 125 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHV-----E--IKNASM 125 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhC-----C--CCCCCE
Confidence 4678999999999999999987 47899999998665555443 333 24799999999876 2 235788
Q ss_pred EEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919 303 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 343 (416)
Q Consensus 303 v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~ 343 (416)
|++++..+|..... ...++++++++|+|||.+++.
T Consensus 126 v~~~~~l~~~~~~~------~~~~l~~i~~~LkpgG~l~i~ 160 (239)
T TIGR00740 126 VILNFTLQFLPPED------RIALLTKIYEGLNPNGVLVLS 160 (239)
T ss_pred EeeecchhhCCHHH------HHHHHHHHHHhcCCCeEEEEe
Confidence 88887666542211 137899999999999999986
No 37
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.31 E-value=5.4e-11 Score=113.33 Aligned_cols=128 Identities=19% Similarity=0.287 Sum_probs=94.1
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHH----HHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEE
Q 014919 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCR----DSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 306 (416)
Q Consensus 231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~----~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~ 306 (416)
...|||+|||+|.++..+++.+|+.+++|+|++..+. +++...+++|+.++++|+.+. + ++++||.|+++
T Consensus 88 ~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~----~--~~~~fD~Vi~n 161 (251)
T TIGR03534 88 PLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEP----L--PGGKFDLIVSN 161 (251)
T ss_pred CCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhcc----C--cCCceeEEEEC
Confidence 4689999999999999999999999999999755544 444456778899999998653 2 36789999998
Q ss_pred CCCCCCCCc--ch----------hhhh--------hhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCCcee
Q 014919 307 CPNPDFNRP--EH----------RWRM--------VQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLV 366 (416)
Q Consensus 307 fpdpw~k~~--h~----------krRl--------~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~~~~ 366 (416)
.| +.... +. +..+ ....+++.+.++|+|||.+++...+. ..+.+.+.+.++++....
T Consensus 162 pP--y~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~-~~~~~~~~l~~~gf~~v~ 238 (251)
T TIGR03534 162 PP--YIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYD-QGEAVRALFEAAGFADVE 238 (251)
T ss_pred CC--CCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECcc-HHHHHHHHHHhCCCCceE
Confidence 43 33211 00 0000 12478899999999999999987653 346677888888876544
Q ss_pred e
Q 014919 367 L 367 (416)
Q Consensus 367 ~ 367 (416)
+
T Consensus 239 ~ 239 (251)
T TIGR03534 239 T 239 (251)
T ss_pred E
Confidence 4
No 38
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.29 E-value=3.3e-11 Score=101.74 Aligned_cols=98 Identities=18% Similarity=0.197 Sum_probs=76.7
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHH----HHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEE
Q 014919 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRD----SLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 306 (416)
Q Consensus 231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~----~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~ 306 (416)
+.++||||||+|.++..+++++|+.+++|+|.+..+.+ +++..++++++++.+|+.+.++. ...++|.|++.
T Consensus 20 ~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~D~v~~~ 95 (124)
T TIGR02469 20 GDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALED----SLPEPDRVFIG 95 (124)
T ss_pred CCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChh----hcCCCCEEEEC
Confidence 57999999999999999999999999999997655444 44456678899999998754221 24689999886
Q ss_pred CCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919 307 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 343 (416)
Q Consensus 307 fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~ 343 (416)
.+... ..++++.+++.|+|||.|++.
T Consensus 96 ~~~~~-----------~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 96 GSGGL-----------LQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred Ccchh-----------HHHHHHHHHHHcCCCCEEEEE
Confidence 43211 148899999999999999885
No 39
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.29 E-value=1e-10 Score=108.02 Aligned_cols=116 Identities=16% Similarity=0.208 Sum_probs=84.8
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHH----HHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHC----RDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 305 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a----~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~ 305 (416)
.+.+|||+|||+|.++..+|+..|+.+++|+|.+..+ .+++++.++.|++++.+|+.+.++. + ...+|.+++
T Consensus 40 ~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~-~---~~~~d~v~~ 115 (196)
T PRK07402 40 PDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQ-L---APAPDRVCI 115 (196)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhh-C---CCCCCEEEE
Confidence 3679999999999999999988888999999975544 4445556778999999999764322 1 223567766
Q ss_pred ECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCC
Q 014919 306 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYG 361 (416)
Q Consensus 306 ~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~ 361 (416)
....+ .+.+++++.++|+|||.+++.+...+......+.+++.+
T Consensus 116 ~~~~~------------~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~ 159 (196)
T PRK07402 116 EGGRP------------IKEILQAVWQYLKPGGRLVATASSLEGLYAISEGLAQLQ 159 (196)
T ss_pred ECCcC------------HHHHHHHHHHhcCCCeEEEEEeecHHHHHHHHHHHHhcC
Confidence 43222 147899999999999999998765555455556666543
No 40
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.29 E-value=1.5e-11 Score=121.89 Aligned_cols=104 Identities=20% Similarity=0.235 Sum_probs=79.3
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHH----hCC-CcEEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL----SGI-TNGYFIATNATSTFRSIVASYPGKLILVSI 305 (416)
Q Consensus 231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~----~~l-~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~ 305 (416)
+.+|||||||+|.++..||+. +.+++|||.+..+++.++. .+. .++.++++|+.++ ++.+++||.|++
T Consensus 132 g~~ILDIGCG~G~~s~~La~~--g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l-----~~~~~~FD~Vi~ 204 (322)
T PLN02396 132 GLKFIDIGCGGGLLSEPLARM--GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKL-----ADEGRKFDAVLS 204 (322)
T ss_pred CCEEEEeeCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHh-----hhccCCCCEEEE
Confidence 568999999999999999874 6799999987666555442 222 4899999999876 324679999987
Q ss_pred ECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHH
Q 014919 306 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEV 349 (416)
Q Consensus 306 ~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~ 349 (416)
...-.+..+. ..++++++++|||||.+++.+.+...
T Consensus 205 ~~vLeHv~d~--------~~~L~~l~r~LkPGG~liist~nr~~ 240 (322)
T PLN02396 205 LEVIEHVANP--------AEFCKSLSALTIPNGATVLSTINRTM 240 (322)
T ss_pred hhHHHhcCCH--------HHHHHHHHHHcCCCcEEEEEECCcCH
Confidence 6433322211 48999999999999999998876543
No 41
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.29 E-value=3e-11 Score=101.50 Aligned_cols=107 Identities=23% Similarity=0.307 Sum_probs=79.1
Q ss_pred CeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHH----HHHhCC-CcEEEEEcChhhhhhhhhccCCCceeEEEEE
Q 014919 232 PLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDS----LQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVSIQ 306 (416)
Q Consensus 232 ~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~----a~~~~l-~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~ 306 (416)
.+|||+|||+|.+++.+++.. ..+++|+|+...+.+. +...++ .+++++++|+.+.. +.+ .++++|.|++|
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~-~~~--~~~~~D~Iv~n 77 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLP-EPL--PDGKFDLIVTN 77 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHH-HTC--TTT-EEEEEE-
T ss_pred CEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhch-hhc--cCceeEEEEEC
Confidence 579999999999999999998 7899999986555444 334455 57999999998873 223 57899999998
Q ss_pred CCCCCCCCcc--hhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919 307 CPNPDFNRPE--HRWRMVQRSLVEAVSDLLVHDGKVFLQS 344 (416)
Q Consensus 307 fpdpw~k~~h--~krRl~~~~~l~~i~r~LkpgG~l~l~t 344 (416)
.||....+ ...+-....|++++.+.|+|||.+.+.+
T Consensus 78 --pP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 78 --PPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp ---STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred --CCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 45543211 1112245699999999999999999865
No 42
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.29 E-value=5.6e-11 Score=112.66 Aligned_cols=131 Identities=16% Similarity=0.296 Sum_probs=99.0
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHH----HHHHhCC-CcEEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRD----SLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVSI 305 (416)
Q Consensus 231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~----~a~~~~l-~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~ 305 (416)
..+|||||||+|...+.+|++.++++++|||+.+.+.+ ..+.+++ ++++++++|+.++... + ...+||.|++
T Consensus 45 ~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~-~--~~~~fD~Ii~ 121 (248)
T COG4123 45 KGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKA-L--VFASFDLIIC 121 (248)
T ss_pred CCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhc-c--cccccCEEEe
Confidence 68999999999999999999988899999997555444 4444455 4799999999998432 2 3457999999
Q ss_pred ECCCCCCCCcch----hh--------hhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCCceee
Q 014919 306 QCPNPDFNRPEH----RW--------RMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL 367 (416)
Q Consensus 306 ~fpdpw~k~~h~----kr--------Rl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~~~~~ 367 (416)
| .|+++.... +. ....+++++...++|||||.+.+....+... +..+.+.+++++....
T Consensus 122 N--PPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~erl~-ei~~~l~~~~~~~k~i 192 (248)
T COG4123 122 N--PPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPERLA-EIIELLKSYNLEPKRI 192 (248)
T ss_pred C--CCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHHHH-HHHHHHHhcCCCceEE
Confidence 8 566543222 11 1225799999999999999999987766544 4678888888875543
No 43
>PRK04266 fibrillarin; Provisional
Probab=99.28 E-value=6.3e-11 Score=111.96 Aligned_cols=124 Identities=15% Similarity=0.135 Sum_probs=90.3
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHH--hCCCcEEEEEcChhhhhhhhhccCCCceeEEEEEC
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL--SGITNGYFIATNATSTFRSIVASYPGKLILVSIQC 307 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~--~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~f 307 (416)
.+.+|||+|||+|.++..+|+..+...++|+|++..+++.+.+ ...+|+.++.+|+... ...++ .+++||.|+...
T Consensus 72 ~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~-~~~~~-l~~~~D~i~~d~ 149 (226)
T PRK04266 72 KGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKP-ERYAH-VVEKVDVIYQDV 149 (226)
T ss_pred CCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCc-chhhh-ccccCCEEEECC
Confidence 4679999999999999999999876789999987755443221 1237899999998752 11112 135699999877
Q ss_pred CCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE-----eCc----HHHHHHHHHHHHhCCCCce
Q 014919 308 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ-----SDI----EEVMLRMKQQFLEYGKGKL 365 (416)
Q Consensus 308 pdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~-----tD~----~~~~~~~~~~~~~~~~~~~ 365 (416)
++||. ...++++++++|||||.+++. .|+ ...++...+.+++.||...
T Consensus 150 ~~p~~----------~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aGF~~i 206 (226)
T PRK04266 150 AQPNQ----------AEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGFEIL 206 (226)
T ss_pred CChhH----------HHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHHHHcCCeEE
Confidence 77762 125689999999999999994 333 2344556688888888754
No 44
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.27 E-value=1.5e-11 Score=112.70 Aligned_cols=138 Identities=18% Similarity=0.145 Sum_probs=103.7
Q ss_pred eeecccCCCCcccccccCccccccccccCCCCCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcE
Q 014919 199 EFLKGRMLPGVSALDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNG 278 (416)
Q Consensus 199 e~l~gr~lPg~~aL~~~~p~~~~~~~~f~~~~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv 278 (416)
.|-..|+.|..+.|.. .|. .....|+|||||+|..+..|++++|+..++|+|.+..+++++ +..+.|+
T Consensus 10 ~F~~eRtRPa~dLla~-Vp~----------~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~A-a~rlp~~ 77 (257)
T COG4106 10 QFEDERTRPARDLLAR-VPL----------ERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKA-AQRLPDA 77 (257)
T ss_pred HHHHhccCcHHHHHhh-CCc----------cccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHH-HHhCCCC
Confidence 3444566666655532 221 135789999999999999999999999999999988888887 4457899
Q ss_pred EEEEcChhhhhhhhhccCCCceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeC-c--HHHHHHHHH
Q 014919 279 YFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD-I--EEVMLRMKQ 355 (416)
Q Consensus 279 ~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD-~--~~~~~~~~~ 355 (416)
+|.++|+.++ . ++.+.|+++.|-.-.|..+ | +++|.++...|.|||.|.++.. | +....-|.+
T Consensus 78 ~f~~aDl~~w-~-----p~~~~dllfaNAvlqWlpd-H-------~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~ 143 (257)
T COG4106 78 TFEEADLRTW-K-----PEQPTDLLFANAVLQWLPD-H-------PELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRE 143 (257)
T ss_pred ceecccHhhc-C-----CCCccchhhhhhhhhhccc-c-------HHHHHHHHHhhCCCceEEEECCCccCchhHHHHHH
Confidence 9999999887 2 4678999998877777422 2 4889999999999999999853 2 233455666
Q ss_pred HHHhCCC
Q 014919 356 QFLEYGK 362 (416)
Q Consensus 356 ~~~~~~~ 362 (416)
..++.+|
T Consensus 144 ~A~~~p~ 150 (257)
T COG4106 144 TADEAPF 150 (257)
T ss_pred HHhcCch
Confidence 6655544
No 45
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.27 E-value=7.7e-12 Score=102.88 Aligned_cols=94 Identities=18% Similarity=0.234 Sum_probs=67.6
Q ss_pred EEEEeccccHHHHHHHHhC---CCCeEEEEchHHHHHHHHHHhC---CCcEEEEEcChhhhhhhhhccCCCceeEEEEEC
Q 014919 234 VVDIGSGNGLFLLGMARKR---KDLNFLGLELVTHCRDSLQLSG---ITNGYFIATNATSTFRSIVASYPGKLILVSIQC 307 (416)
Q Consensus 234 vLDIGCG~G~~~~~lA~~~---p~~~~iGvD~~~~a~~~a~~~~---l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~f 307 (416)
|||+|||+|..+..+++.+ |..+++|+|+++.+++.+++.. -.+++|+++|+.++ + ...+++|.|++.+
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l-~----~~~~~~D~v~~~~ 75 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDL-P----FSDGKFDLVVCSG 75 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCH-H----HHSSSEEEEEE-T
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHC-c----ccCCCeeEEEEcC
Confidence 7999999999999999986 5689999999887777665432 12899999999987 2 2467999999853
Q ss_pred C-CCCCCCcchhhhhhhHHHHHHHHhhccCCc
Q 014919 308 P-NPDFNRPEHRWRMVQRSLVEAVSDLLVHDG 338 (416)
Q Consensus 308 p-dpw~k~~h~krRl~~~~~l~~i~r~LkpgG 338 (416)
. -.+.. +-....+++++.++|+|||
T Consensus 76 ~~~~~~~------~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 76 LSLHHLS------PEELEALLRRIARLLRPGG 101 (101)
T ss_dssp TGGGGSS------HHHHHHHHHHHHHTEEEEE
T ss_pred CccCCCC------HHHHHHHHHHHHHHhCCCC
Confidence 2 12111 1123589999999999998
No 46
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.27 E-value=1e-10 Score=114.27 Aligned_cols=125 Identities=11% Similarity=0.179 Sum_probs=92.1
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHH----HHHHHhCCC-cEEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCR----DSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVSI 305 (416)
Q Consensus 231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~----~~a~~~~l~-nv~f~~~Da~~l~~~~~~~~~~s~D~v~~ 305 (416)
..+|||+|||+|.+++.+|+..|+.+++|+|++..|+ ++++.+++. +++|+++|+.+. + ++++||.|++
T Consensus 122 ~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~----~--~~~~fD~Iv~ 195 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAA----L--PGRKYDLIVS 195 (284)
T ss_pred CCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhc----c--CCCCccEEEE
Confidence 4689999999999999999999999999999865554 445555764 699999998543 2 3458999999
Q ss_pred ECCCCCCCCcc----------h-hhh--------hhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCCce
Q 014919 306 QCPNPDFNRPE----------H-RWR--------MVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKL 365 (416)
Q Consensus 306 ~fpdpw~k~~h----------~-krR--------l~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~~~ 365 (416)
| .|+.+... . +.- -....+++.+.+.|+|||.+++.+.+. . +...+.+.++++.+.
T Consensus 196 N--PPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~-~-~~v~~~~~~~~~~~~ 270 (284)
T TIGR03533 196 N--PPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNS-M-EALEEAYPDVPFTWL 270 (284)
T ss_pred C--CCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcC-H-HHHHHHHHhCCCcee
Confidence 8 44432211 0 000 123578999999999999999988763 2 567778888777653
No 47
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.25 E-value=1.7e-10 Score=104.23 Aligned_cols=117 Identities=15% Similarity=0.158 Sum_probs=95.4
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchH----HHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELV----THCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 305 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~----~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~ 305 (416)
++++++|||||+|..++++|...|..++|++|.. ....+++++.+.+|++++.+|+.+.+++ .+ ++|.+|+
T Consensus 34 ~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~----~~-~~daiFI 108 (187)
T COG2242 34 PGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPD----LP-SPDAIFI 108 (187)
T ss_pred CCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcC----CC-CCCEEEE
Confidence 4789999999999999999999999999999964 4445566778999999999999887531 12 7999999
Q ss_pred ECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCC
Q 014919 306 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKG 363 (416)
Q Consensus 306 ~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~ 363 (416)
.-.-. .+..|+.+...|||||++.+..-..+.....++.+++.++.
T Consensus 109 GGg~~------------i~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~~~g~~ 154 (187)
T COG2242 109 GGGGN------------IEEILEAAWERLKPGGRLVANAITLETLAKALEALEQLGGR 154 (187)
T ss_pred CCCCC------------HHHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHHHHcCCc
Confidence 73211 25899999999999999999766556666678888998884
No 48
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.25 E-value=6.8e-11 Score=117.84 Aligned_cols=122 Identities=16% Similarity=0.137 Sum_probs=89.9
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHh-CCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCC
Q 014919 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS-GITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN 309 (416)
Q Consensus 231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~-~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpd 309 (416)
+.+|||||||+|.++..+++..+..+++|+|.+..+++.++++ ...|++++.+|+.++ ++++++||.|+++..-
T Consensus 114 ~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~l-----p~~~~sFDvVIs~~~L 188 (340)
T PLN02490 114 NLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDL-----PFPTDYADRYVSAGSI 188 (340)
T ss_pred CCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhC-----CCCCCceeEEEEcChh
Confidence 5789999999999999999988888999999877776665543 246799999999876 4457899999886443
Q ss_pred CCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcH-H---------------HHHHHHHHHHhCCCCce
Q 014919 310 PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE-E---------------VMLRMKQQFLEYGKGKL 365 (416)
Q Consensus 310 pw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~-~---------------~~~~~~~~~~~~~~~~~ 365 (416)
.+..+. ...+++++++|||||.+.+..+.. . -.+++.+.+++.||...
T Consensus 189 ~~~~d~--------~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V 252 (340)
T PLN02490 189 EYWPDP--------QRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDV 252 (340)
T ss_pred hhCCCH--------HHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEE
Confidence 322221 368999999999999998753211 0 12455567777777643
No 49
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.25 E-value=8.8e-11 Score=118.62 Aligned_cols=118 Identities=19% Similarity=0.214 Sum_probs=83.5
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHH----HHhCC---CcEEEEEcChhhhhhhhhccCCCceeEE
Q 014919 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL----QLSGI---TNGYFIATNATSTFRSIVASYPGKLILV 303 (416)
Q Consensus 231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a----~~~~l---~nv~f~~~Da~~l~~~~~~~~~~s~D~v 303 (416)
..+|||+|||+|..++.+++++|+.+++++|.+..|.+.+ +.++. .+++++..|+... + .+.+||.|
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~----~--~~~~fDlI 302 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG----V--EPFRFNAV 302 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc----C--CCCCEEEE
Confidence 4689999999999999999999999999999866655444 33443 4789999987543 1 35689999
Q ss_pred EEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCc-HHHHHHHHHHH
Q 014919 304 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI-EEVMLRMKQQF 357 (416)
Q Consensus 304 ~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~-~~~~~~~~~~~ 357 (416)
++|. |++.. |.-..-+..++++.++++|+|||.|++.... .+|...+.+.|
T Consensus 303 lsNP--Pfh~~-~~~~~~ia~~l~~~a~~~LkpGG~L~iV~nr~l~y~~~L~~~f 354 (378)
T PRK15001 303 LCNP--PFHQQ-HALTDNVAWEMFHHARRCLKINGELYIVANRHLDYFHKLKKIF 354 (378)
T ss_pred EECc--CcccC-ccCCHHHHHHHHHHHHHhcccCCEEEEEEecCcCHHHHHHHHc
Confidence 9983 43321 1100112357899999999999999998532 34555444433
No 50
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.24 E-value=3.2e-11 Score=112.78 Aligned_cols=108 Identities=19% Similarity=0.284 Sum_probs=84.6
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCC---cEEEEEcChhhhhhhhhccCCCceeEEEEE
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGIT---NGYFIATNATSTFRSIVASYPGKLILVSIQ 306 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~---nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~ 306 (416)
.+.+|||||||-|.++..||+. +.+|+|+|+++.+++-++.+... ++.+.+..++++.. ..++||+|.+.
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~--Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~-----~~~~FDvV~cm 131 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARL--GASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLAS-----AGGQFDVVTCM 131 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHC--CCeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHh-----cCCCccEEEEh
Confidence 4689999999999999999998 58999999877776665533222 36688888888732 34799999764
Q ss_pred -----CCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHH
Q 014919 307 -----CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQF 357 (416)
Q Consensus 307 -----fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~ 357 (416)
.||| ..|++.+.+.+||||.++++|-+....-++...+
T Consensus 132 EVlEHv~dp-------------~~~~~~c~~lvkP~G~lf~STinrt~ka~~~~i~ 174 (243)
T COG2227 132 EVLEHVPDP-------------ESFLRACAKLVKPGGILFLSTINRTLKAYLLAII 174 (243)
T ss_pred hHHHccCCH-------------HHHHHHHHHHcCCCcEEEEeccccCHHHHHHHHH
Confidence 4555 3799999999999999999998877666665543
No 51
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.24 E-value=1.7e-10 Score=106.72 Aligned_cols=119 Identities=13% Similarity=0.194 Sum_probs=90.0
Q ss_pred CCCeEEEEeccccHHHHHHHHhC-CCCeEEEEchHHHH----HHHHHHhC-CCcEEEEEcChhhhhhhhhccCCCceeEE
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLELVTHC----RDSLQLSG-ITNGYFIATNATSTFRSIVASYPGKLILV 303 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~-p~~~~iGvD~~~~a----~~~a~~~~-l~nv~f~~~Da~~l~~~~~~~~~~s~D~v 303 (416)
.+..+||+|||+|.+++.+|+.. +..+++++|++..+ .++++..+ ..|+.++++|+.+.++. .++++|.|
T Consensus 40 ~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~----~~~~~D~V 115 (198)
T PRK00377 40 KGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFT----INEKFDRI 115 (198)
T ss_pred CcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhh----cCCCCCEE
Confidence 36899999999999999999864 56799999975544 44555567 47899999999875321 24689999
Q ss_pred EEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCC
Q 014919 304 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKG 363 (416)
Q Consensus 304 ~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~ 363 (416)
+++..... ...+++.+.+.|+|||++++.+-..+......+.++++++.
T Consensus 116 ~~~~~~~~-----------~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~~ 164 (198)
T PRK00377 116 FIGGGSEK-----------LKEIISASWEIIKKGGRIVIDAILLETVNNALSALENIGFN 164 (198)
T ss_pred EECCCccc-----------HHHHHHHHHHHcCCCcEEEEEeecHHHHHHHHHHHHHcCCC
Confidence 98642211 14789999999999999998654455567788888888874
No 52
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.23 E-value=9e-11 Score=112.82 Aligned_cols=101 Identities=18% Similarity=0.206 Sum_probs=77.2
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHH----HHhCC-CcEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL----QLSGI-TNGYFIATNATSTFRSIVASYPGKLILVS 304 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a----~~~~l-~nv~f~~~Da~~l~~~~~~~~~~s~D~v~ 304 (416)
.+.+|||||||+|.++..+|+. ..+++|+|++..+++.+ ...++ .|++++++|+.++ .. ..+++||.|+
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l-~~---~~~~~fD~V~ 117 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDI-AQ---HLETPVDLIL 117 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHH-hh---hcCCCCCEEE
Confidence 3579999999999999999987 57899999866555443 34454 5799999999886 21 2367899998
Q ss_pred EECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919 305 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 344 (416)
Q Consensus 305 ~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t 344 (416)
++.+-.|..++ ..+++++.++|||||.+.+..
T Consensus 118 ~~~vl~~~~~~--------~~~l~~~~~~LkpgG~l~i~~ 149 (255)
T PRK11036 118 FHAVLEWVADP--------KSVLQTLWSVLRPGGALSLMF 149 (255)
T ss_pred ehhHHHhhCCH--------HHHHHHHHHHcCCCeEEEEEE
Confidence 87544443221 378999999999999998753
No 53
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.23 E-value=6.9e-11 Score=109.38 Aligned_cols=100 Identities=11% Similarity=0.091 Sum_probs=75.2
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHH----HHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDS----LQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 305 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~----a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~ 305 (416)
.+.+|||+|||+|.++..||++ ..+++|+|++..+++. +...++.|+++.+.|+.++ + .+++||.|++
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~-----~-~~~~fD~I~~ 101 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNL-----T-FDGEYDFILS 101 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhC-----C-cCCCcCEEEE
Confidence 3578999999999999999986 5799999986655443 4455778899999998765 2 2467999988
Q ss_pred ECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919 306 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 343 (416)
Q Consensus 306 ~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~ 343 (416)
++.-.|.... ..+.++++++++|+|||.+++.
T Consensus 102 ~~~~~~~~~~------~~~~~l~~i~~~LkpgG~~~~~ 133 (197)
T PRK11207 102 TVVLMFLEAK------TIPGLIANMQRCTKPGGYNLIV 133 (197)
T ss_pred ecchhhCCHH------HHHHHHHHHHHHcCCCcEEEEE
Confidence 7553332111 1258999999999999996553
No 54
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.22 E-value=1.4e-10 Score=111.32 Aligned_cols=129 Identities=13% Similarity=0.183 Sum_probs=92.6
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhC-CCcEEEEEcChhhhhhhhhccCCCceeEEEEECCC
Q 014919 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSG-ITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN 309 (416)
Q Consensus 231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~-l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpd 309 (416)
..++||+|||+|.+++.+++..|..+++|+|++..|.+.++++- ..+++++++|+.+.++..+ .++||.|++| .
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~---~~~fDlVv~N--P 161 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTAL---RGRVDILAAN--A 161 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhc---CCCEeEEEEC--C
Confidence 35899999999999999999999999999998777666554321 1235889999876432211 3579999998 4
Q ss_pred CCCCCc-----------ch-hhhh--------hhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCCce
Q 014919 310 PDFNRP-----------EH-RWRM--------VQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKL 365 (416)
Q Consensus 310 pw~k~~-----------h~-krRl--------~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~~~ 365 (416)
||.... |. +..+ +...+++.+.+.|+|||.+++.+.... ...+.+.++++++...
T Consensus 162 Py~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~-~~~v~~~l~~~g~~~~ 236 (251)
T TIGR03704 162 PYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSERQ-APLAVEAFARAGLIAR 236 (251)
T ss_pred CCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcch-HHHHHHHHHHCCCCce
Confidence 443211 10 0011 235788889999999999999987654 5678888999887643
No 55
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.19 E-value=8.4e-11 Score=113.72 Aligned_cols=102 Identities=16% Similarity=0.154 Sum_probs=76.7
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHh--CCCcEEEEEcChhhhhhhhhccCCCceeEEEEEC
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS--GITNGYFIATNATSTFRSIVASYPGKLILVSIQC 307 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~--~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~f 307 (416)
.+.+|||||||+|..+..+|+.+ .++++|+|++..+.+.+++. ...++.|.++|+... |+++++||.|+++.
T Consensus 52 ~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~-----~~~~~~FD~V~s~~ 125 (263)
T PTZ00098 52 ENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKK-----DFPENTFDMIYSRD 125 (263)
T ss_pred CCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccC-----CCCCCCeEEEEEhh
Confidence 36789999999999999998875 67999999887766665543 235799999998765 33578999998853
Q ss_pred CCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919 308 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 343 (416)
Q Consensus 308 pdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~ 343 (416)
.-.+.... . ...++++++++|||||.|++.
T Consensus 126 ~l~h~~~~-d-----~~~~l~~i~r~LkPGG~lvi~ 155 (263)
T PTZ00098 126 AILHLSYA-D-----KKKLFEKCYKWLKPNGILLIT 155 (263)
T ss_pred hHHhCCHH-H-----HHHHHHHHHHHcCCCcEEEEE
Confidence 21111100 1 148899999999999999984
No 56
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.19 E-value=2.1e-10 Score=111.13 Aligned_cols=101 Identities=16% Similarity=0.205 Sum_probs=77.3
Q ss_pred CCCeEEEEeccccHHHHHHHHh-CCCCeEEEEchHHHHHHH----HHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919 230 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLELVTHCRDS----LQLSGITNGYFIATNATSTFRSIVASYPGKLILVS 304 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~-~p~~~~iGvD~~~~a~~~----a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~ 304 (416)
.+.+|||||||+|..+..+++. .+..+++|+|++..+++. ....+.+|++|+.+|+.++ ++++++||.|+
T Consensus 77 ~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l-----~~~~~~fD~Vi 151 (272)
T PRK11873 77 PGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEAL-----PVADNSVDVII 151 (272)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhC-----CCCCCceeEEE
Confidence 4689999999999988877776 456789999975544444 4445778999999998876 33567999998
Q ss_pred EECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919 305 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 343 (416)
Q Consensus 305 ~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~ 343 (416)
.++.-.|... .+..+++++++|||||+|++.
T Consensus 152 ~~~v~~~~~d--------~~~~l~~~~r~LkpGG~l~i~ 182 (272)
T PRK11873 152 SNCVINLSPD--------KERVFKEAFRVLKPGGRFAIS 182 (272)
T ss_pred EcCcccCCCC--------HHHHHHHHHHHcCCCcEEEEE
Confidence 8754333221 137899999999999999984
No 57
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.19 E-value=5.4e-12 Score=103.22 Aligned_cols=95 Identities=19% Similarity=0.246 Sum_probs=57.2
Q ss_pred EEEeccccHHHHHHHHhCCCCeEEEEchHHHHH----HHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCCC
Q 014919 235 VDIGSGNGLFLLGMARKRKDLNFLGLELVTHCR----DSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNP 310 (416)
Q Consensus 235 LDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~----~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdp 310 (416)
||||||+|.++..+++++|..+++|+|+++.++ ++.......+...+..+..+.... . ..++||.|++.+.-.
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~fD~V~~~~vl~ 77 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDY-D--PPESFDLVVASNVLH 77 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---C-C--C----SEEEEE-TTS
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhc-c--cccccceehhhhhHh
Confidence 799999999999999999999999999866555 344444555555555555544211 0 235999999987766
Q ss_pred CCCCcchhhhhhhHHHHHHHHhhccCCcEE
Q 014919 311 DFNRPEHRWRMVQRSLVEAVSDLLVHDGKV 340 (416)
Q Consensus 311 w~k~~h~krRl~~~~~l~~i~r~LkpgG~l 340 (416)
|.++ ...+++.+++.|||||.|
T Consensus 78 ~l~~--------~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 78 HLED--------IEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp --S---------HHHHHHHHTTT-TSS-EE
T ss_pred hhhh--------HHHHHHHHHHHcCCCCCC
Confidence 6521 138999999999999986
No 58
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.18 E-value=4.5e-10 Score=110.95 Aligned_cols=123 Identities=11% Similarity=0.205 Sum_probs=89.3
Q ss_pred CeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHH----HHHHhCCC-cEEEEEcChhhhhhhhhccCCCceeEEEEE
Q 014919 232 PLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRD----SLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVSIQ 306 (416)
Q Consensus 232 ~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~----~a~~~~l~-nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~ 306 (416)
..|||+|||+|.+++.+|+.+|+.+++|+|++..|++ +++.+++. +++++++|+.+. + ++++||.|++|
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~----l--~~~~fDlIvsN 208 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAA----L--PGRRYDLIVSN 208 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhh----C--CCCCccEEEEC
Confidence 6899999999999999999999999999998665544 44455664 599999998653 2 24689999987
Q ss_pred CCCCCCCCcc-----------hhh--------hhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCCc
Q 014919 307 CPNPDFNRPE-----------HRW--------RMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGK 364 (416)
Q Consensus 307 fpdpw~k~~h-----------~kr--------Rl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~~ 364 (416)
.|+..... ++. --....+++.+.+.|+|||.+++.+.+. .+.+.+.+...++.+
T Consensus 209 --PPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~--~~~~~~~~~~~~~~~ 281 (307)
T PRK11805 209 --PPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS--RVHLEEAYPDVPFTW 281 (307)
T ss_pred --CCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcC--HHHHHHHHhhCCCEE
Confidence 44432111 000 0123578999999999999999987754 234667777766544
No 59
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.17 E-value=5.8e-10 Score=110.23 Aligned_cols=100 Identities=11% Similarity=0.099 Sum_probs=73.1
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHH---HH--hCCCcEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL---QL--SGITNGYFIATNATSTFRSIVASYPGKLILVS 304 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a---~~--~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~ 304 (416)
.+.+|||||||+|.++..++...+. .++|+|.+..++..+ ++ ....++.+..+++.++ + ...+||.|+
T Consensus 121 ~g~~VLDvGCG~G~~~~~~~~~g~~-~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~l-----p-~~~~FD~V~ 193 (314)
T TIGR00452 121 KGRTILDVGCGSGYHMWRMLGHGAK-SLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQL-----H-ELYAFDTVF 193 (314)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHC-----C-CCCCcCEEE
Confidence 4689999999999999999988654 799999765544322 11 1235788999998876 2 235899998
Q ss_pred EECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919 305 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 344 (416)
Q Consensus 305 ~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t 344 (416)
++..-.|..+ ...+|++++++|||||.|++.+
T Consensus 194 s~gvL~H~~d--------p~~~L~el~r~LkpGG~Lvlet 225 (314)
T TIGR00452 194 SMGVLYHRKS--------PLEHLKQLKHQLVIKGELVLET 225 (314)
T ss_pred EcchhhccCC--------HHHHHHHHHHhcCCCCEEEEEE
Confidence 7743332111 1378999999999999999864
No 60
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.17 E-value=1.2e-10 Score=115.88 Aligned_cols=100 Identities=16% Similarity=0.157 Sum_probs=74.0
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHH--HHHh--C-CCcEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDS--LQLS--G-ITNGYFIATNATSTFRSIVASYPGKLILVS 304 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~--a~~~--~-l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~ 304 (416)
.+.+|||||||+|.++..+++..+. .++|+|.+...... +... + ..|+.|+.+|+.++ |. +++||.|+
T Consensus 122 ~g~~VLDIGCG~G~~~~~la~~g~~-~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~l-----p~-~~~FD~V~ 194 (322)
T PRK15068 122 KGRTVLDVGCGNGYHMWRMLGAGAK-LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQL-----PA-LKAFDTVF 194 (322)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHC-----CC-cCCcCEEE
Confidence 4689999999999999999998765 59999976554332 2111 2 34799999999877 43 67899998
Q ss_pred EECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919 305 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 344 (416)
Q Consensus 305 ~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t 344 (416)
+...-.+ .+. ...+|+++++.|+|||.+++.+
T Consensus 195 s~~vl~H------~~d--p~~~L~~l~~~LkpGG~lvl~~ 226 (322)
T PRK15068 195 SMGVLYH------RRS--PLDHLKQLKDQLVPGGELVLET 226 (322)
T ss_pred ECChhhc------cCC--HHHHHHHHHHhcCCCcEEEEEE
Confidence 7532211 111 1378999999999999999863
No 61
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.17 E-value=7e-10 Score=112.63 Aligned_cols=132 Identities=17% Similarity=0.211 Sum_probs=94.4
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHH----HhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEE
Q 014919 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ----LSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 306 (416)
Q Consensus 231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~----~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~ 306 (416)
+.++||+|||+|.+++.+++.+|+.+++|+|++..|++.++ .++. |++++++|+.+. .++ ..++||.|++|
T Consensus 252 ~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~-rV~fi~gDl~e~---~l~-~~~~FDLIVSN 326 (423)
T PRK14966 252 NGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA-RVEFAHGSWFDT---DMP-SEGKWDIIVSN 326 (423)
T ss_pred CCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-cEEEEEcchhcc---ccc-cCCCccEEEEC
Confidence 46899999999999999999999999999998766655443 3443 799999998653 111 24579999998
Q ss_pred CCCCCCCCcch-----------hhh--------hhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCCceee
Q 014919 307 CPNPDFNRPEH-----------RWR--------MVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL 367 (416)
Q Consensus 307 fpdpw~k~~h~-----------krR--------l~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~~~~~ 367 (416)
.|+...... +.. .+...+++.+.+.|+|||.+++.... +..+.+.+.+++.++.....
T Consensus 327 --PPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~-~Q~e~V~~ll~~~Gf~~v~v 403 (423)
T PRK14966 327 --PPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGF-DQGAAVRGVLAENGFSGVET 403 (423)
T ss_pred --CCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECc-cHHHHHHHHHHHCCCcEEEE
Confidence 344332110 000 12347788888999999999998766 45677888888888764444
Q ss_pred ecc
Q 014919 368 VQD 370 (416)
Q Consensus 368 ~~d 370 (416)
..|
T Consensus 404 ~kD 406 (423)
T PRK14966 404 LPD 406 (423)
T ss_pred EEc
Confidence 333
No 62
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.16 E-value=1.6e-10 Score=103.19 Aligned_cols=123 Identities=20% Similarity=0.315 Sum_probs=86.2
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHH----HHHHhCCCc-EEEEEcChhhhhhhhhc------cCCC
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRD----SLQLSGITN-GYFIATNATSTFRSIVA------SYPG 298 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~----~a~~~~l~n-v~f~~~Da~~l~~~~~~------~~~~ 298 (416)
+.++|||+|||+|.++..|++.-=....+|+|.++.|.+ .+++.+.+| |+|.+.|+..- .+++ ...+
T Consensus 67 ~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~--~~~~~qfdlvlDKG 144 (227)
T KOG1271|consen 67 QADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDP--DFLSGQFDLVLDKG 144 (227)
T ss_pred cccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCC--cccccceeEEeecC
Confidence 356999999999999999998743445999998665544 456678888 99999999763 2220 0124
Q ss_pred ceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCCc
Q 014919 299 KLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGK 364 (416)
Q Consensus 299 s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~~ 364 (416)
.+|.|.+ .||- + .+|+. -++..+.+.|+|||+|.+.+ +....+++.+.++..++..
T Consensus 145 T~DAisL-s~d~----~-~~r~~---~Y~d~v~~ll~~~gifvItS-CN~T~dELv~~f~~~~f~~ 200 (227)
T KOG1271|consen 145 TLDAISL-SPDG----P-VGRLV---VYLDSVEKLLSPGGIFVITS-CNFTKDELVEEFENFNFEY 200 (227)
T ss_pred ceeeeec-CCCC----c-cccee---eehhhHhhccCCCcEEEEEe-cCccHHHHHHHHhcCCeEE
Confidence 4444444 2332 1 12222 56788899999999999854 4456788999999987653
No 63
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.16 E-value=7.2e-10 Score=108.37 Aligned_cols=123 Identities=14% Similarity=0.199 Sum_probs=88.2
Q ss_pred CeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHH----HHHHhCCCc-EEEEEcChhhhhhhhhccCCCceeEEEEE
Q 014919 232 PLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRD----SLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVSIQ 306 (416)
Q Consensus 232 ~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~----~a~~~~l~n-v~f~~~Da~~l~~~~~~~~~~s~D~v~~~ 306 (416)
.+|||+|||+|.+++.+|...|+.+++|+|++..|++ +++.+++.+ +.|+++|+.+. + ++.+||.|++|
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~----~--~~~~fDlIvsN 189 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEP----L--AGQKIDIIVSN 189 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhcc----C--cCCCccEEEEC
Confidence 5899999999999999999999999999998665554 444556654 99999998653 2 23489999987
Q ss_pred CCCCCCCCcc---------hhhh----------hhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHh-CCCC
Q 014919 307 CPNPDFNRPE---------HRWR----------MVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLE-YGKG 363 (416)
Q Consensus 307 fpdpw~k~~h---------~krR----------l~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~-~~~~ 363 (416)
.|+.+... +..+ .....+++.+.+.|+|||.+++.+.+. ..+.+.+.+.. .+|.
T Consensus 190 --PPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~-q~~~~~~~~~~~~~~~ 263 (284)
T TIGR00536 190 --PPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNW-QQKSLKELLRIKFTWY 263 (284)
T ss_pred --CCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECcc-HHHHHHHHHHhcCCCc
Confidence 44433221 0000 124578999999999999999987653 44455566663 4554
No 64
>PRK05785 hypothetical protein; Provisional
Probab=99.15 E-value=3.2e-10 Score=107.28 Aligned_cols=94 Identities=6% Similarity=0.033 Sum_probs=73.9
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCCC
Q 014919 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNP 310 (416)
Q Consensus 231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdp 310 (416)
+.+|||||||+|..+..+++.. +.+++|+|++..+++.+++. ..++++|+..+ |+++++||.|++.|.-.
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~----~~~~~~d~~~l-----p~~d~sfD~v~~~~~l~ 121 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVA----DDKVVGSFEAL-----PFRDKSFDVVMSSFALH 121 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhc----cceEEechhhC-----CCCCCCEEEEEecChhh
Confidence 5789999999999999999987 57999999998888876543 24678998876 55789999999987544
Q ss_pred CCCCcchhhhhhhHHHHHHHHhhccCCc-EEEE
Q 014919 311 DFNRPEHRWRMVQRSLVEAVSDLLVHDG-KVFL 342 (416)
Q Consensus 311 w~k~~h~krRl~~~~~l~~i~r~LkpgG-~l~l 342 (416)
|..+ .+..+++++|+|||.. .+.+
T Consensus 122 ~~~d--------~~~~l~e~~RvLkp~~~ile~ 146 (226)
T PRK05785 122 ASDN--------IEKVIAEFTRVSRKQVGFIAM 146 (226)
T ss_pred ccCC--------HHHHHHHHHHHhcCceEEEEe
Confidence 4322 1478999999999953 3444
No 65
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.15 E-value=1.7e-10 Score=112.04 Aligned_cols=100 Identities=21% Similarity=0.258 Sum_probs=70.0
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHH----HHHHHHHhCCC-cEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTH----CRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVS 304 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~----a~~~a~~~~l~-nv~f~~~Da~~l~~~~~~~~~~s~D~v~ 304 (416)
.+.+|||||||.|.++..+|+++ +++++||.++.. +.+++++.|++ ++++..+|..++ +.+||.|+
T Consensus 62 ~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~--------~~~fD~Iv 132 (273)
T PF02353_consen 62 PGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDL--------PGKFDRIV 132 (273)
T ss_dssp TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-----------S-SEEE
T ss_pred CCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeecccc--------CCCCCEEE
Confidence 47899999999999999999998 899999998643 45556667876 599999998776 34899987
Q ss_pred EECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919 305 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 344 (416)
Q Consensus 305 ~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t 344 (416)
..-.-- |-. +-..+.|++.+.++|||||.+++.+
T Consensus 133 Si~~~E-----hvg-~~~~~~~f~~~~~~LkpgG~~~lq~ 166 (273)
T PF02353_consen 133 SIEMFE-----HVG-RKNYPAFFRKISRLLKPGGRLVLQT 166 (273)
T ss_dssp EESEGG-----GTC-GGGHHHHHHHHHHHSETTEEEEEEE
T ss_pred EEechh-----hcC-hhHHHHHHHHHHHhcCCCcEEEEEe
Confidence 652211 111 1123699999999999999998864
No 66
>PRK08317 hypothetical protein; Provisional
Probab=99.15 E-value=3.2e-10 Score=106.46 Aligned_cols=101 Identities=17% Similarity=0.169 Sum_probs=78.2
Q ss_pred CCCeEEEEeccccHHHHHHHHhC-CCCeEEEEchHHHHHHHHHHh---CCCcEEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLELVTHCRDSLQLS---GITNGYFIATNATSTFRSIVASYPGKLILVSI 305 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~-p~~~~iGvD~~~~a~~~a~~~---~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~ 305 (416)
.+..|||+|||+|.++..+++.+ |..+++|+|.+...++.++++ ...|+.+..+|+..+ ++.+++||.|++
T Consensus 19 ~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~-----~~~~~~~D~v~~ 93 (241)
T PRK08317 19 PGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGL-----PFPDGSFDAVRS 93 (241)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccC-----CCCCCCceEEEE
Confidence 36799999999999999999987 788999999876655544433 346899999998765 335678999988
Q ss_pred ECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919 306 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 343 (416)
Q Consensus 306 ~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~ 343 (416)
...-.+..+. ..+++++.++|+|||.+++.
T Consensus 94 ~~~~~~~~~~--------~~~l~~~~~~L~~gG~l~~~ 123 (241)
T PRK08317 94 DRVLQHLEDP--------ARALAEIARVLRPGGRVVVL 123 (241)
T ss_pred echhhccCCH--------HHHHHHHHHHhcCCcEEEEE
Confidence 6443332221 47899999999999999875
No 67
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.15 E-value=3.6e-10 Score=106.02 Aligned_cols=101 Identities=12% Similarity=0.124 Sum_probs=78.3
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCC------CeEEEEchHHHH----HHHHHHhCCC---cEEEEEcChhhhhhhhhccC
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRKD------LNFLGLELVTHC----RDSLQLSGIT---NGYFIATNATSTFRSIVASY 296 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p~------~~~iGvD~~~~a----~~~a~~~~l~---nv~f~~~Da~~l~~~~~~~~ 296 (416)
++..+||++||||..+..+.+..+. .+++.+|++..+ .+++.+.++. .+.++++||+++ |++
T Consensus 100 ~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~L-----pFd 174 (296)
T KOG1540|consen 100 KGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDL-----PFD 174 (296)
T ss_pred CCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccC-----CCC
Confidence 4689999999999999999988666 899999975544 4444444553 399999999998 567
Q ss_pred CCceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919 297 PGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 343 (416)
Q Consensus 297 ~~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~ 343 (416)
++++|..++.|.--.. .|. ++.|++.+|+|||||+|++-
T Consensus 175 d~s~D~yTiafGIRN~--th~------~k~l~EAYRVLKpGGrf~cL 213 (296)
T KOG1540|consen 175 DDSFDAYTIAFGIRNV--THI------QKALREAYRVLKPGGRFSCL 213 (296)
T ss_pred CCcceeEEEecceecC--CCH------HHHHHHHHHhcCCCcEEEEE
Confidence 9999999887642111 111 47899999999999998863
No 68
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.15 E-value=3.8e-10 Score=109.19 Aligned_cols=124 Identities=18% Similarity=0.239 Sum_probs=86.9
Q ss_pred ccCCCCCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHH----HHHHHhCCCcEEEEEcChhhhhhhhhccCCCce
Q 014919 225 AYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCR----DSLQLSGITNGYFIATNATSTFRSIVASYPGKL 300 (416)
Q Consensus 225 ~f~~~~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~----~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~ 300 (416)
.++......|||+|||.|..++.||+.+|+.+++-+|++..|+ +++..++++|..+...|..+- -.++|
T Consensus 153 ~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~-------v~~kf 225 (300)
T COG2813 153 TLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEP-------VEGKF 225 (300)
T ss_pred hCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEeccccc-------ccccc
Confidence 3433335589999999999999999999999999999755554 455567788876666665442 13489
Q ss_pred eEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeC-cHHHHHHHHHHHH
Q 014919 301 ILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD-IEEVMLRMKQQFL 358 (416)
Q Consensus 301 D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD-~~~~~~~~~~~~~ 358 (416)
|.|.+| .|.+. .+.--.-+-.++++...+.|++||.|++... ..+|...|.+.|.
T Consensus 226 d~IisN--PPfh~-G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l~y~~~L~~~Fg 281 (300)
T COG2813 226 DLIISN--PPFHA-GKAVVHSLAQEIIAAAARHLKPGGELWIVANRHLPYEKKLKELFG 281 (300)
T ss_pred cEEEeC--CCccC-CcchhHHHHHHHHHHHHHhhccCCEEEEEEcCCCChHHHHHHhcC
Confidence 999998 55442 2211111124899999999999999999764 3445555555543
No 69
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.14 E-value=3.4e-10 Score=104.63 Aligned_cols=98 Identities=9% Similarity=-0.012 Sum_probs=71.1
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHH----HHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEE
Q 014919 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDS----LQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 306 (416)
Q Consensus 231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~----a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~ 306 (416)
..+|||+|||+|.++..+|++ ..+++|+|++..+++. +...+++ +++...|+... + .++++|.|+++
T Consensus 31 ~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~~~~-v~~~~~d~~~~-----~-~~~~fD~I~~~ 101 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKARENLP-LRTDAYDINAA-----A-LNEDYDFIFST 101 (195)
T ss_pred CCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHhCCC-ceeEeccchhc-----c-ccCCCCEEEEe
Confidence 578999999999999999986 5799999986655544 3344553 77888887543 2 24679999887
Q ss_pred CCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919 307 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 343 (416)
Q Consensus 307 fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~ 343 (416)
++-.+.... ..+.++++++++|+|||.+++.
T Consensus 102 ~~~~~~~~~------~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 102 VVFMFLQAG------RVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred cccccCCHH------HHHHHHHHHHHHhCCCcEEEEE
Confidence 543322111 1248899999999999996654
No 70
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.14 E-value=3.2e-10 Score=106.27 Aligned_cols=96 Identities=20% Similarity=0.256 Sum_probs=74.6
Q ss_pred CCCeEEEEeccccHHHHHHHHhCC-CCeEEEEchH----HHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLELV----THCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS 304 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p-~~~~iGvD~~----~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~ 304 (416)
.+.+|||||||+|.++..||+..+ +.+++|+|++ ..|.+++++.+++|++++++|+.+.+. ...+||.|+
T Consensus 77 ~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~-----~~~~fD~Ii 151 (215)
T TIGR00080 77 PGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWE-----PLAPYDRIY 151 (215)
T ss_pred CcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCc-----ccCCCCEEE
Confidence 468999999999999999999864 5679999964 445566667788899999999976521 246899999
Q ss_pred EECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919 305 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 344 (416)
Q Consensus 305 ~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t 344 (416)
+..+.+ ...+.+.+.|+|||++++..
T Consensus 152 ~~~~~~--------------~~~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 152 VTAAGP--------------KIPEALIDQLKEGGILVMPV 177 (215)
T ss_pred EcCCcc--------------cccHHHHHhcCcCcEEEEEE
Confidence 875432 23456788999999999864
No 71
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.14 E-value=2.5e-10 Score=110.08 Aligned_cols=100 Identities=16% Similarity=0.185 Sum_probs=77.6
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHH----HHHHHHHhCCC-cEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTH----CRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVS 304 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~----a~~~a~~~~l~-nv~f~~~Da~~l~~~~~~~~~~s~D~v~ 304 (416)
.+.++||||||.|..++.+|+++ +.+++|+++|+. +.+++.+.|++ |++++..|-.++ .+.||.|+
T Consensus 72 ~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~--------~e~fDrIv 142 (283)
T COG2230 72 PGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDF--------EEPFDRIV 142 (283)
T ss_pred CCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccc--------ccccceee
Confidence 58999999999999999999999 899999998654 44555667887 899999998876 34499986
Q ss_pred EECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919 305 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 344 (416)
Q Consensus 305 ~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t 344 (416)
..-.--++... -.+.|++.++++|+|||.+.+.+
T Consensus 143 SvgmfEhvg~~------~~~~ff~~~~~~L~~~G~~llh~ 176 (283)
T COG2230 143 SVGMFEHVGKE------NYDDFFKKVYALLKPGGRMLLHS 176 (283)
T ss_pred ehhhHHHhCcc------cHHHHHHHHHhhcCCCceEEEEE
Confidence 54111111111 13699999999999999998864
No 72
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.13 E-value=3.3e-10 Score=105.88 Aligned_cols=108 Identities=13% Similarity=0.160 Sum_probs=76.0
Q ss_pred CCCeEEEEeccccHHHHHHHHhC-CCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhh--hhhh-ccCCCceeEEEE
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTF--RSIV-ASYPGKLILVSI 305 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~-p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~--~~~~-~~~~~s~D~v~~ 305 (416)
.+..|||||||+|.++..++++. +...++|||++.. ....|+.++++|+.+.. +... ++.++++|.|++
T Consensus 51 ~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~-------~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S 123 (209)
T PRK11188 51 PGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM-------DPIVGVDFLQGDFRDELVLKALLERVGDSKVQVVMS 123 (209)
T ss_pred CCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc-------cCCCCcEEEecCCCChHHHHHHHHHhCCCCCCEEec
Confidence 36799999999999999999986 4579999999661 24568999999998741 1110 124678999998
Q ss_pred ECCCCCCCCcc-hhhhh--hhHHHHHHHHhhccCCcEEEEEe
Q 014919 306 QCPNPDFNRPE-HRWRM--VQRSLVEAVSDLLVHDGKVFLQS 344 (416)
Q Consensus 306 ~fpdpw~k~~h-~krRl--~~~~~l~~i~r~LkpgG~l~l~t 344 (416)
+....|...+- ..-+. ....+|+++.++|||||.|++.+
T Consensus 124 ~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~ 165 (209)
T PRK11188 124 DMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKV 165 (209)
T ss_pred CCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 75333322110 00000 12478999999999999999964
No 73
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.13 E-value=1.2e-09 Score=105.70 Aligned_cols=125 Identities=15% Similarity=0.205 Sum_probs=91.9
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHh----CCCcEEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS----GITNGYFIATNATSTFRSIVASYPGKLILVSI 305 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~----~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~ 305 (416)
....|||+|||+|.++..+++..|..+++|+|++..+++.++++ ...|+.++++|+... + .+++||.|++
T Consensus 108 ~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~----~--~~~~fD~Iv~ 181 (275)
T PRK09328 108 EPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEP----L--PGGRFDLIVS 181 (275)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCc----C--CCCceeEEEE
Confidence 35789999999999999999999999999999877666555432 345899999998543 1 2578999998
Q ss_pred ECCCCCCCCcch------------hhh--------hhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCC
Q 014919 306 QCPNPDFNRPEH------------RWR--------MVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKG 363 (416)
Q Consensus 306 ~fpdpw~k~~h~------------krR--------l~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~ 363 (416)
|. |+...... ... .....+++.+.+.|+|||.+++.+.+. ..+.+.+.+.+.++.
T Consensus 182 np--Py~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~~-~~~~~~~~l~~~gf~ 256 (275)
T PRK09328 182 NP--PYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGYD-QGEAVRALLAAAGFA 256 (275)
T ss_pred CC--CcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECch-HHHHHHHHHHhCCCc
Confidence 73 33322110 000 113578889999999999999988664 456677888887775
No 74
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.12 E-value=8.8e-10 Score=103.93 Aligned_cols=116 Identities=21% Similarity=0.237 Sum_probs=101.3
Q ss_pred CCCeEEEEeccccHHHHHHHH-hCCCCeEEEEch----HHHHHHHHHHhCCCc-EEEEEcChhhhhhhhhccCCCceeEE
Q 014919 230 AQPLVVDIGSGNGLFLLGMAR-KRKDLNFLGLEL----VTHCRDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILV 303 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~-~~p~~~~iGvD~----~~~a~~~a~~~~l~n-v~f~~~Da~~l~~~~~~~~~~s~D~v 303 (416)
.+.+|||.|.|+|.++..||. ..|..+++.+|+ .+.|++++++.++.| +.+..+|+.+.. ....||.|
T Consensus 94 pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~------~~~~vDav 167 (256)
T COG2519 94 PGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGI------DEEDVDAV 167 (256)
T ss_pred CCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccc------cccccCEE
Confidence 478999999999999999997 468889999995 567888888888877 999999998762 24489999
Q ss_pred EEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCCc
Q 014919 304 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGK 364 (416)
Q Consensus 304 ~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~~ 364 (416)
++-.|||| .+++.+++.|||||.+.+-+..-+..+...+.+++.+|-.
T Consensus 168 ~LDmp~PW-------------~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~~~ 215 (256)
T COG2519 168 FLDLPDPW-------------NVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRERGFVD 215 (256)
T ss_pred EEcCCChH-------------HHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhcCccc
Confidence 99999999 8899999999999999998888888888889999987753
No 75
>PRK06922 hypothetical protein; Provisional
Probab=99.12 E-value=2.7e-10 Score=120.57 Aligned_cols=110 Identities=15% Similarity=0.221 Sum_probs=80.6
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHh---CCCcEEEEEcChhhhhhhhhccCCCceeEEEEEC
Q 014919 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS---GITNGYFIATNATSTFRSIVASYPGKLILVSIQC 307 (416)
Q Consensus 231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~---~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~f 307 (416)
+.+|||||||+|.++..+|+.+|+.+++|+|++..+++.++++ ...++.++++|+.++ +..| ++++||.|++++
T Consensus 419 g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dL-p~~f--edeSFDvVVsn~ 495 (677)
T PRK06922 419 GDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINL-SSSF--EKESVDTIVYSS 495 (677)
T ss_pred CCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhC-cccc--CCCCEEEEEEch
Confidence 5799999999999999999999999999999877766655432 124688999999876 3334 578999998775
Q ss_pred CCCCC-C----CcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919 308 PNPDF-N----RPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 343 (416)
Q Consensus 308 pdpw~-k----~~h~krRl~~~~~l~~i~r~LkpgG~l~l~ 343 (416)
+-.|. . ....-.......+|++++++|||||.+++.
T Consensus 496 vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~ 536 (677)
T PRK06922 496 ILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIR 536 (677)
T ss_pred HHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 43321 0 000000012258899999999999999996
No 76
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.12 E-value=1e-09 Score=106.95 Aligned_cols=120 Identities=17% Similarity=0.293 Sum_probs=91.9
Q ss_pred eEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHH----HHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECC
Q 014919 233 LVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCR----DSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP 308 (416)
Q Consensus 233 ~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~----~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fp 308 (416)
.|||||||+|..++.+|++.|+++++|+|++..|+ ++++.+++.|+.++++|..+- ..+.||.|.+|
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~-------~~~~fDlIVsN-- 183 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEP-------LRGKFDLIVSN-- 183 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccc-------cCCceeEEEeC--
Confidence 79999999999999999999999999999876655 455566777777777764332 24589999998
Q ss_pred CCCCCCc----------c-hh--------hhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCC
Q 014919 309 NPDFNRP----------E-HR--------WRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGK 362 (416)
Q Consensus 309 dpw~k~~----------h-~k--------rRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~ 362 (416)
.||.+.. | +. ..-+...++..+.+.|+|||.+.+.+... ..+.+.+.+.+.++
T Consensus 184 PPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~-q~~~v~~~~~~~~~ 255 (280)
T COG2890 184 PPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLT-QGEAVKALFEDTGF 255 (280)
T ss_pred CCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCC-cHHHHHHHHHhcCC
Confidence 6665443 1 00 01235688999999999999999987643 46678888988884
No 77
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.11 E-value=4e-10 Score=117.80 Aligned_cols=100 Identities=18% Similarity=0.173 Sum_probs=78.0
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHh--CC-CcEEEEEcChhhhhhhhhccCCCceeEEEEE
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS--GI-TNGYFIATNATSTFRSIVASYPGKLILVSIQ 306 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~--~l-~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~ 306 (416)
.+.+|||||||+|..+..+|+.. +++++|+|++..+++.++++ +. .++.|+++|+... ++++++||.|++.
T Consensus 266 ~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~-----~~~~~~fD~I~s~ 339 (475)
T PLN02336 266 PGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKK-----TYPDNSFDVIYSR 339 (475)
T ss_pred CCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccC-----CCCCCCEEEEEEC
Confidence 36799999999999999999876 77999999987777665432 33 3699999998765 3356789999876
Q ss_pred CCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919 307 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 343 (416)
Q Consensus 307 fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~ 343 (416)
..-.|..++ +.++++++++|||||.+++.
T Consensus 340 ~~l~h~~d~--------~~~l~~~~r~LkpgG~l~i~ 368 (475)
T PLN02336 340 DTILHIQDK--------PALFRSFFKWLKPGGKVLIS 368 (475)
T ss_pred CcccccCCH--------HHHHHHHHHHcCCCeEEEEE
Confidence 443333221 48899999999999999986
No 78
>PRK14968 putative methyltransferase; Provisional
Probab=99.11 E-value=1.6e-09 Score=98.36 Aligned_cols=125 Identities=16% Similarity=0.222 Sum_probs=86.5
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHH----HHHHhCCCc--EEEEEcChhhhhhhhhccCCCceeEE
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRD----SLQLSGITN--GYFIATNATSTFRSIVASYPGKLILV 303 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~----~a~~~~l~n--v~f~~~Da~~l~~~~~~~~~~s~D~v 303 (416)
++..+||+|||+|.++..++++ ..+++|+|++..+.+ ++..+++.+ +.++++|..+. + .+.++|.|
T Consensus 23 ~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~----~--~~~~~d~v 94 (188)
T PRK14968 23 KGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEP----F--RGDKFDVI 94 (188)
T ss_pred CCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccc----c--cccCceEE
Confidence 4678999999999999999988 689999997655444 344456555 89999997553 2 34589999
Q ss_pred EEECCCCCCCCcc-------------h--hhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCCc
Q 014919 304 SIQCPNPDFNRPE-------------H--RWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGK 364 (416)
Q Consensus 304 ~~~fpdpw~k~~h-------------~--krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~~ 364 (416)
+++.| +..... . ..+...+.+++++.++|||||.+++........+.+.+.+.+.++..
T Consensus 95 i~n~p--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l~~~~~~~g~~~ 168 (188)
T PRK14968 95 LFNPP--YLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGEDEVLEYLEKLGFEA 168 (188)
T ss_pred EECCC--cCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCCHHHHHHHHHHCCCee
Confidence 88743 211000 0 00112357899999999999998876433223455777888888764
No 79
>PRK14967 putative methyltransferase; Provisional
Probab=99.10 E-value=1.9e-09 Score=101.68 Aligned_cols=124 Identities=19% Similarity=0.176 Sum_probs=85.2
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHH----HHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEE
Q 014919 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDS----LQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 306 (416)
Q Consensus 231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~----a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~ 306 (416)
+.+|||+|||+|.++..+++. +..+++|+|++..+++. ++..+. ++.++++|+... + .+++||.|+++
T Consensus 37 ~~~vLDlGcG~G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~-~~~~~~~d~~~~----~--~~~~fD~Vi~n 108 (223)
T PRK14967 37 GRRVLDLCTGSGALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLAGV-DVDVRRGDWARA----V--EFRPFDVVVSN 108 (223)
T ss_pred CCeEEEecCCHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhCC-eeEEEECchhhh----c--cCCCeeEEEEC
Confidence 579999999999999999986 34589999986655543 333444 688999987653 2 35789999987
Q ss_pred CCCCCCCCcch---------------hhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCCc
Q 014919 307 CPNPDFNRPEH---------------RWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGK 364 (416)
Q Consensus 307 fpdpw~k~~h~---------------krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~~ 364 (416)
- |+...... ........+++++.++|||||++++.+.........++.+++.++..
T Consensus 109 p--Py~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~~~~~~~~l~~~g~~~ 179 (223)
T PRK14967 109 P--PYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSGVERTLTRLSEAGLDA 179 (223)
T ss_pred C--CCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccCHHHHHHHHHHCCCCe
Confidence 3 33321110 00112357889999999999999985433223445667778777653
No 80
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.09 E-value=4.6e-10 Score=105.44 Aligned_cols=119 Identities=16% Similarity=0.202 Sum_probs=84.2
Q ss_pred eEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHH----HHHHHhCC-CcEEEEEcChhhhhhhhhccCCCceeEEEEEC
Q 014919 233 LVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCR----DSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVSIQC 307 (416)
Q Consensus 233 ~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~----~~a~~~~l-~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~f 307 (416)
+|||||||+|.++..+|+.+|+.+++|+|++..+. +++...++ .+++++.+|+... + .+++||.|+...
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~-----~-~~~~fD~I~~~~ 75 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKD-----P-FPDTYDLVFGFE 75 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccC-----C-CCCCCCEeehHH
Confidence 69999999999999999999999999999865444 34444455 3699999998654 2 245899998653
Q ss_pred CCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcH------------H---HHHHHHHHHHhCCCCce
Q 014919 308 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE------------E---VMLRMKQQFLEYGKGKL 365 (416)
Q Consensus 308 pdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~------------~---~~~~~~~~~~~~~~~~~ 365 (416)
.-.+..+ .+.++++++++|||||.+++..-.. . ...+..+.+.+.|+...
T Consensus 76 ~l~~~~~--------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~ 140 (224)
T smart00828 76 VIHHIKD--------KMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVV 140 (224)
T ss_pred HHHhCCC--------HHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEE
Confidence 2222111 1489999999999999999853110 0 12345567788887654
No 81
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.07 E-value=1.8e-09 Score=113.53 Aligned_cols=131 Identities=15% Similarity=0.202 Sum_probs=93.8
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHH----HHhCCC-cEEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL----QLSGIT-NGYFIATNATSTFRSIVASYPGKLILVSI 305 (416)
Q Consensus 231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a----~~~~l~-nv~f~~~Da~~l~~~~~~~~~~s~D~v~~ 305 (416)
..+|||+|||+|.+++.+|+.+|+.+++|+|++..|++.+ +.+++. ++.++++|+.+. + ..++||.|++
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~----~--~~~~fDlIvs 212 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFEN----I--EKQKFDFIVS 212 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhh----C--cCCCccEEEE
Confidence 4689999999999999999999999999999876655544 444654 699999997543 1 3568999999
Q ss_pred ECCCCCCCCcc-----------h-hh--------hhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCCce
Q 014919 306 QCPNPDFNRPE-----------H-RW--------RMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKL 365 (416)
Q Consensus 306 ~fpdpw~k~~h-----------~-kr--------Rl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~~~ 365 (416)
| .|+..... . .. ......+++.+.++|+|||.+++.+... ..+.+.+.+.+.++...
T Consensus 213 N--PPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~~-q~~~v~~~~~~~g~~~~ 289 (506)
T PRK01544 213 N--PPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGFK-QEEAVTQIFLDHGYNIE 289 (506)
T ss_pred C--CCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECCc-hHHHHHHHHHhcCCCce
Confidence 8 34432111 0 00 0123567889999999999999986543 56667788888887644
Q ss_pred eeecc
Q 014919 366 VLVQD 370 (416)
Q Consensus 366 ~~~~d 370 (416)
.+..|
T Consensus 290 ~~~~D 294 (506)
T PRK01544 290 SVYKD 294 (506)
T ss_pred EEEec
Confidence 44334
No 82
>PRK01581 speE spermidine synthase; Validated
Probab=99.07 E-value=2.8e-09 Score=106.27 Aligned_cols=127 Identities=16% Similarity=0.122 Sum_probs=95.6
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHh-----------CCCcEEEEEcChhhhhhhhhccCCC
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS-----------GITNGYFIATNATSTFRSIVASYPG 298 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~-----------~l~nv~f~~~Da~~l~~~~~~~~~~ 298 (416)
+..+||+||||.|..+..+.+..+..++++||+.+..++.|++. .-++++++.+|+.+++.. .++
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~----~~~ 225 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSS----PSS 225 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHh----cCC
Confidence 46899999999999888888765568999999877666655531 135799999999987542 356
Q ss_pred ceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHH----HHHHHHHHhCCCC
Q 014919 299 KLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVM----LRMKQQFLEYGKG 363 (416)
Q Consensus 299 s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~----~~~~~~~~~~~~~ 363 (416)
+||.|++.++||... .-.++...+|++.+++.|+|||.+.+......+. ..+.+.+++.++.
T Consensus 226 ~YDVIIvDl~DP~~~---~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~af~~ 291 (374)
T PRK01581 226 LYDVIIIDFPDPATE---LLSTLYTSELFARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEHAGLT 291 (374)
T ss_pred CccEEEEcCCCcccc---chhhhhHHHHHHHHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHHHhCCc
Confidence 899999999888632 1235667899999999999999999886654332 3345666766543
No 83
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.07 E-value=1.1e-09 Score=102.52 Aligned_cols=96 Identities=17% Similarity=0.246 Sum_probs=73.2
Q ss_pred CCCeEEEEeccccHHHHHHHHhC-CCCeEEEEchH----HHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLELV----THCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS 304 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~-p~~~~iGvD~~----~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~ 304 (416)
.+.+|||||||+|.++..+|+.. ++.+++|+|++ ..|.++++..+..|++++++|+...+ + ..+.||.|+
T Consensus 76 ~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~----~-~~~~fD~I~ 150 (212)
T PRK13942 76 EGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGY----E-ENAPYDRIY 150 (212)
T ss_pred CcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCC----C-cCCCcCEEE
Confidence 46899999999999999999875 45799999964 44555556668889999999987652 1 357899998
Q ss_pred EECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919 305 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 344 (416)
Q Consensus 305 ~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t 344 (416)
+...-+ ...+.+.+.|||||++++..
T Consensus 151 ~~~~~~--------------~~~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 151 VTAAGP--------------DIPKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred ECCCcc--------------cchHHHHHhhCCCcEEEEEE
Confidence 864322 22346777999999998853
No 84
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.07 E-value=1.6e-09 Score=108.54 Aligned_cols=116 Identities=16% Similarity=0.246 Sum_probs=80.9
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHH----HHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEE
Q 014919 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL----QLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 306 (416)
Q Consensus 231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a----~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~ 306 (416)
..+|||+|||+|.++..+++++|+.+++++|++..|++.+ +.+++. .+++.+|+... .+++||.|++|
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~-~~~~~~D~~~~-------~~~~fDlIvsN 268 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLE-GEVFASNVFSD-------IKGRFDMIISN 268 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CEEEEcccccc-------cCCCccEEEEC
Confidence 4589999999999999999999999999999866655544 445553 56777776442 25789999998
Q ss_pred CCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCc-HHHHHHHHHHH
Q 014919 307 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI-EEVMLRMKQQF 357 (416)
Q Consensus 307 fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~-~~~~~~~~~~~ 357 (416)
.| .+....... -....+++.+.+.|||||.|++.... .+|...+.+.|
T Consensus 269 PP--FH~g~~~~~-~~~~~~i~~a~~~LkpgG~L~iVan~~l~y~~~l~~~F 317 (342)
T PRK09489 269 PP--FHDGIQTSL-DAAQTLIRGAVRHLNSGGELRIVANAFLPYPDLLDETF 317 (342)
T ss_pred CC--ccCCccccH-HHHHHHHHHHHHhcCcCCEEEEEEeCCCChHHHHHHHc
Confidence 44 322111100 12258999999999999999987543 44544433333
No 85
>PHA03411 putative methyltransferase; Provisional
Probab=99.06 E-value=1.9e-09 Score=103.84 Aligned_cols=124 Identities=13% Similarity=0.026 Sum_probs=92.3
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCCC
Q 014919 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNP 310 (416)
Q Consensus 231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdp 310 (416)
..+|||+|||+|.++..++++.+..+++|+|++..+.+.++++ .+++.++++|+.++. .+.+||.|++| .|
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n-~~~v~~v~~D~~e~~------~~~kFDlIIsN--PP 135 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRL-LPEAEWITSDVFEFE------SNEKFDVVISN--PP 135 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHh-CcCCEEEECchhhhc------ccCCCcEEEEc--CC
Confidence 4689999999999999999888778999999988888877553 568999999998762 24689999998 45
Q ss_pred CCCCcchhhh----h----------hhHHHHHHHHhhccCCcEEEEEeCcHHHH------HHHHHHHHhCCCC
Q 014919 311 DFNRPEHRWR----M----------VQRSLVEAVSDLLVHDGKVFLQSDIEEVM------LRMKQQFLEYGKG 363 (416)
Q Consensus 311 w~k~~h~krR----l----------~~~~~l~~i~r~LkpgG~l~l~tD~~~~~------~~~~~~~~~~~~~ 363 (416)
|+.....+++ . .-.+++......|+|+|.+.+..+..+++ .+..+.++++|+.
T Consensus 136 F~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~y~~sl~~~~y~~~l~~~g~~ 208 (279)
T PHA03411 136 FGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPYYDGTMKSNKYLKWSKQTGLV 208 (279)
T ss_pred ccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccccccccCCHHHHHHHHHhcCcE
Confidence 5432221111 1 12588999999999999988876665553 2335567788764
No 86
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.06 E-value=1e-09 Score=100.59 Aligned_cols=120 Identities=14% Similarity=0.055 Sum_probs=81.0
Q ss_pred CCCeEEEEeccccHHHHHHHHhC-CCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhh--h---hhhccCCCceeEE
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTF--R---SIVASYPGKLILV 303 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~-p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~--~---~~~~~~~~s~D~v 303 (416)
.+..|||||||+|.++..+++++ +..+++|+|++... ...|+.++++|+.+.. + +.+ .++++|.|
T Consensus 32 ~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-------~~~~i~~~~~d~~~~~~~~~l~~~~--~~~~~D~V 102 (188)
T TIGR00438 32 PGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-------PIENVDFIRGDFTDEEVLNKIRERV--GDDKVDVV 102 (188)
T ss_pred CCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-------cCCCceEEEeeCCChhHHHHHHHHh--CCCCccEE
Confidence 36899999999999999999886 56789999997632 3467899999986531 1 112 35689999
Q ss_pred EEECCCC----CCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHh
Q 014919 304 SIQCPNP----DFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLE 359 (416)
Q Consensus 304 ~~~fpdp----w~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~ 359 (416)
+++.+.+ |. ..|.........+++.+.++|+|||++++......-...+.+.++.
T Consensus 103 ~~~~~~~~~g~~~-~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~~l~~ 161 (188)
T TIGR00438 103 MSDAAPNISGYWD-IDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNELRK 161 (188)
T ss_pred EcCCCCCCCCCcc-ccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCccHHHHHHHHHh
Confidence 9865422 21 1121111123578999999999999999965433233334444444
No 87
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.06 E-value=1.2e-09 Score=108.89 Aligned_cols=121 Identities=14% Similarity=0.124 Sum_probs=86.7
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHH----HHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHC----RDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 305 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a----~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~ 305 (416)
.+..+||+|||+|.+++.++.. ..+++|+|++..+ .++++..+++++.++++|+.++ |..++++|.|++
T Consensus 182 ~g~~vLDp~cGtG~~lieaa~~--~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l-----~~~~~~~D~Iv~ 254 (329)
T TIGR01177 182 EGDRVLDPFCGTGGFLIEAGLM--GAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKL-----PLSSESVDAIAT 254 (329)
T ss_pred CcCEEEECCCCCCHHHHHHHHh--CCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcC-----CcccCCCCEEEE
Confidence 3678999999999999987764 6799999975544 4455566888899999999886 334678999998
Q ss_pred ECCCCCCCCcchh---hhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCC
Q 014919 306 QCPNPDFNRPEHR---WRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGK 362 (416)
Q Consensus 306 ~fpdpw~k~~h~k---rRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~ 362 (416)
+ .|+......+ ..-....+++++.++|||||++.+.+.... .+.+.+++++|
T Consensus 255 d--PPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~---~~~~~~~~~g~ 309 (329)
T TIGR01177 255 D--PPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRI---DLESLAEDAFR 309 (329)
T ss_pred C--CCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCC---CHHHHHhhcCc
Confidence 7 3432211111 112246899999999999999988764432 23455677777
No 88
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.06 E-value=3.8e-10 Score=99.53 Aligned_cols=97 Identities=20% Similarity=0.295 Sum_probs=73.3
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCC
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN 309 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpd 309 (416)
....|||||||+|.++..+++.. .+++|+|++..+.+. .++.+...+.... +.++++||.|+++..-
T Consensus 22 ~~~~vLDiGcG~G~~~~~l~~~~--~~~~g~D~~~~~~~~------~~~~~~~~~~~~~-----~~~~~~fD~i~~~~~l 88 (161)
T PF13489_consen 22 PGKRVLDIGCGTGSFLRALAKRG--FEVTGVDISPQMIEK------RNVVFDNFDAQDP-----PFPDGSFDLIICNDVL 88 (161)
T ss_dssp TTSEEEEESSTTSHHHHHHHHTT--SEEEEEESSHHHHHH------TTSEEEEEECHTH-----HCHSSSEEEEEEESSG
T ss_pred CCCEEEEEcCCCCHHHHHHHHhC--CEEEEEECCHHHHhh------hhhhhhhhhhhhh-----hccccchhhHhhHHHH
Confidence 57899999999999999997763 399999998877765 4444444444433 1147899999998654
Q ss_pred CCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcH
Q 014919 310 PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE 347 (416)
Q Consensus 310 pw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~ 347 (416)
.|.++ ...+|+.++++|||||.+++.+...
T Consensus 89 ~~~~d--------~~~~l~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 89 EHLPD--------PEEFLKELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp GGSSH--------HHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred hhccc--------HHHHHHHHHHhcCCCCEEEEEEcCC
Confidence 44331 1489999999999999999987553
No 89
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.05 E-value=1.6e-09 Score=100.95 Aligned_cols=96 Identities=10% Similarity=0.135 Sum_probs=72.7
Q ss_pred CCCeEEEEeccccHHHHHHHHhCC-CCeEEEEchHHH----HHHHHHHhCCC-cEEEEEcChhhhhhhhhccCCCceeEE
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLELVTH----CRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILV 303 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p-~~~~iGvD~~~~----a~~~a~~~~l~-nv~f~~~Da~~l~~~~~~~~~~s~D~v 303 (416)
.+.+|||||||+|..+..+|+..+ ..+++|+|++.. |.++++..++. |++++.+|+.+.+ + ...+||.|
T Consensus 72 ~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~----~-~~~~fD~I 146 (205)
T PRK13944 72 PGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGL----E-KHAPFDAI 146 (205)
T ss_pred CCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCC----c-cCCCccEE
Confidence 357999999999999999998764 568999997554 44455556665 5999999997652 2 34689999
Q ss_pred EEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919 304 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 344 (416)
Q Consensus 304 ~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t 344 (416)
++...-+ .+.+++.+.|+|||+|++..
T Consensus 147 i~~~~~~--------------~~~~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 147 IVTAAAS--------------TIPSALVRQLKDGGVLVIPV 173 (205)
T ss_pred EEccCcc--------------hhhHHHHHhcCcCcEEEEEE
Confidence 9875433 23357789999999998853
No 90
>PRK00811 spermidine synthase; Provisional
Probab=99.05 E-value=2.5e-09 Score=104.59 Aligned_cols=123 Identities=13% Similarity=0.120 Sum_probs=90.2
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHh---------CCCcEEEEEcChhhhhhhhhccCCCce
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS---------GITNGYFIATNATSTFRSIVASYPGKL 300 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~---------~l~nv~f~~~Da~~l~~~~~~~~~~s~ 300 (416)
+..+||+||||+|..+..+++..+..++++||+.....+.+++. .-++++++.+|+..++.. .+++|
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~----~~~~y 151 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAE----TENSF 151 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhh----CCCcc
Confidence 46789999999999999998765567899999755544443321 135799999999887532 36789
Q ss_pred eEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCc----HHHHHHHHHHHHhC
Q 014919 301 ILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI----EEVMLRMKQQFLEY 360 (416)
Q Consensus 301 D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~----~~~~~~~~~~~~~~ 360 (416)
|.|++..+||+.... ++...+|++.+++.|+|||.+.+.+.. .+.+..+.+.+++.
T Consensus 152 DvIi~D~~dp~~~~~----~l~t~ef~~~~~~~L~~gGvlv~~~~~~~~~~~~~~~i~~tl~~~ 211 (283)
T PRK00811 152 DVIIVDSTDPVGPAE----GLFTKEFYENCKRALKEDGIFVAQSGSPFYQADEIKDMHRKLKEV 211 (283)
T ss_pred cEEEECCCCCCCchh----hhhHHHHHHHHHHhcCCCcEEEEeCCCcccCHHHHHHHHHHHHHH
Confidence 999998888873221 355679999999999999999987543 23344455555554
No 91
>PRK04457 spermidine synthase; Provisional
Probab=99.04 E-value=4.1e-09 Score=101.92 Aligned_cols=122 Identities=9% Similarity=0.028 Sum_probs=86.5
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHh----C-CCcEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS----G-ITNGYFIATNATSTFRSIVASYPGKLILVS 304 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~----~-l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~ 304 (416)
....|||||||+|.++..+++.+|+.+++++|+.....+.+++. + .++++++.+|+.+.+.. .++++|.|+
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~----~~~~yD~I~ 141 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAV----HRHSTDVIL 141 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHh----CCCCCCEEE
Confidence 45789999999999999999999999999999866665555432 2 26799999999887542 246899998
Q ss_pred EECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe-CcHHHHHHHHHHHHh
Q 014919 305 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS-DIEEVMLRMKQQFLE 359 (416)
Q Consensus 305 ~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t-D~~~~~~~~~~~~~~ 359 (416)
+...++ .. ....+...+|++.+.+.|+|||.+.+.. .........++.+++
T Consensus 142 ~D~~~~---~~-~~~~l~t~efl~~~~~~L~pgGvlvin~~~~~~~~~~~l~~l~~ 193 (262)
T PRK04457 142 VDGFDG---EG-IIDALCTQPFFDDCRNALSSDGIFVVNLWSRDKRYDRYLERLES 193 (262)
T ss_pred EeCCCC---CC-CccccCcHHHHHHHHHhcCCCcEEEEEcCCCchhHHHHHHHHHH
Confidence 753221 11 1112345699999999999999998842 222233444555544
No 92
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.03 E-value=1.9e-09 Score=100.39 Aligned_cols=101 Identities=15% Similarity=0.187 Sum_probs=78.1
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCC-CeEEEEchHHHHHHHHHHh--CCCcEEEEEcChhhhhhhhhccCCCceeEEEEE
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRKD-LNFLGLELVTHCRDSLQLS--GITNGYFIATNATSTFRSIVASYPGKLILVSIQ 306 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p~-~~~iGvD~~~~a~~~a~~~--~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~ 306 (416)
.+.+|||+|||+|.++..+++..|. .+++|+|++..+.+.++++ ...+++++.+|+.+. ++.++++|.|+++
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-----~~~~~~~D~i~~~ 113 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEAL-----PFEDNSFDAVTIA 113 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcC-----CCCCCcEEEEEEe
Confidence 3679999999999999999999886 7999999876666555433 235799999999876 2246789999877
Q ss_pred CCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919 307 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 343 (416)
Q Consensus 307 fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~ 343 (416)
+...+... ...+++.+.+.|+|||.+++.
T Consensus 114 ~~~~~~~~--------~~~~l~~~~~~L~~gG~l~~~ 142 (223)
T TIGR01934 114 FGLRNVTD--------IQKALREMYRVLKPGGRLVIL 142 (223)
T ss_pred eeeCCccc--------HHHHHHHHHHHcCCCcEEEEE
Confidence 54322211 137899999999999999875
No 93
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.03 E-value=1.3e-09 Score=106.68 Aligned_cols=98 Identities=11% Similarity=0.098 Sum_probs=73.2
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHH----HHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEE
Q 014919 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDS----LQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 306 (416)
Q Consensus 231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~----a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~ 306 (416)
+.++||||||+|.++..+|+. +.+++|+|++..+++. ++..++ ++++...|+... + .+++||.|+++
T Consensus 121 ~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~~l-~v~~~~~D~~~~-----~-~~~~fD~I~~~ 191 (287)
T PRK12335 121 PGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKENL-NIRTGLYDINSA-----S-IQEEYDFILST 191 (287)
T ss_pred CCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcCC-ceEEEEechhcc-----c-ccCCccEEEEc
Confidence 458999999999999999986 5799999986665544 445566 899999988664 2 26789999877
Q ss_pred CCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919 307 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 343 (416)
Q Consensus 307 fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~ 343 (416)
+.-.+.... ..+.+++++.++|+|||++++.
T Consensus 192 ~vl~~l~~~------~~~~~l~~~~~~LkpgG~~l~v 222 (287)
T PRK12335 192 VVLMFLNRE------RIPAIIKNMQEHTNPGGYNLIV 222 (287)
T ss_pred chhhhCCHH------HHHHHHHHHHHhcCCCcEEEEE
Confidence 543321111 1248899999999999996664
No 94
>PLN03075 nicotianamine synthase; Provisional
Probab=99.03 E-value=1.1e-09 Score=106.84 Aligned_cols=103 Identities=11% Similarity=0.113 Sum_probs=74.7
Q ss_pred CCCeEEEEecccc--HHHHHHHHhCCCCeEEEEchHHHHHHH----HHH-hCCC-cEEEEEcChhhhhhhhhccCCCcee
Q 014919 230 AQPLVVDIGSGNG--LFLLGMARKRKDLNFLGLELVTHCRDS----LQL-SGIT-NGYFIATNATSTFRSIVASYPGKLI 301 (416)
Q Consensus 230 ~~~~vLDIGCG~G--~~~~~lA~~~p~~~~iGvD~~~~a~~~----a~~-~~l~-nv~f~~~Da~~l~~~~~~~~~~s~D 301 (416)
.+.+|+|||||.| ..++.+++.+|+.+|+|+|+++.+.+. +.. .++. +++|.++|+.+.. + ..+.||
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~----~-~l~~FD 197 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVT----E-SLKEYD 197 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcc----c-ccCCcC
Confidence 4688999999988 444445567899999999976554443 322 4554 5999999998752 1 236799
Q ss_pred EEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919 302 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 344 (416)
Q Consensus 302 ~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t 344 (416)
.|++..--.|-+.. ..+.++.+++.|+|||.+++.+
T Consensus 198 lVF~~ALi~~dk~~-------k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 198 VVFLAALVGMDKEE-------KVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred EEEEeccccccccc-------HHHHHHHHHHhcCCCcEEEEec
Confidence 99987322232222 1488999999999999999987
No 95
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.03 E-value=9e-10 Score=103.24 Aligned_cols=102 Identities=18% Similarity=0.109 Sum_probs=71.3
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHH-HhCC---------------CcEEEEEcChhhhhhhhh
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ-LSGI---------------TNGYFIATNATSTFRSIV 293 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~-~~~l---------------~nv~f~~~Da~~l~~~~~ 293 (416)
.+.++||+|||.|..++.||++ +.+|+|+|++..|++.+. ++++ .+|+++++|+.++...
T Consensus 34 ~~~rvLd~GCG~G~da~~LA~~--G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~-- 109 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLAEQ--GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAA-- 109 (213)
T ss_pred CCCeEEEeCCCchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcc--
Confidence 3679999999999999999987 889999999998888743 3332 3689999999876211
Q ss_pred ccCCCceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919 294 ASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 343 (416)
Q Consensus 294 ~~~~~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~ 343 (416)
..+.||.|+-...-... .+. ..+.+++.+.++|||||++++.
T Consensus 110 --~~~~fD~i~D~~~~~~l-~~~-----~R~~~~~~l~~lLkpgG~~ll~ 151 (213)
T TIGR03840 110 --DLGPVDAVYDRAALIAL-PEE-----MRQRYAAHLLALLPPGARQLLI 151 (213)
T ss_pred --cCCCcCEEEechhhccC-CHH-----HHHHHHHHHHHHcCCCCeEEEE
Confidence 12456666422100000 011 1247899999999999986665
No 96
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.02 E-value=2e-09 Score=106.18 Aligned_cols=100 Identities=14% Similarity=0.113 Sum_probs=74.8
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEch---HHHHHHHHHHhCCC-cEEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL---VTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVSI 305 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~---~~~a~~~a~~~~l~-nv~f~~~Da~~l~~~~~~~~~~s~D~v~~ 305 (416)
...++||||||+|.++..+++++|+.+++++|. ++.+.+++++.++. +++++.+|+.+. .+ + ..|.+++
T Consensus 149 ~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~---~~--~--~~D~v~~ 221 (306)
T TIGR02716 149 GVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKE---SY--P--EADAVLF 221 (306)
T ss_pred CCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCC---CC--C--CCCEEEe
Confidence 357999999999999999999999999999995 45556666666764 699999998753 12 2 2588765
Q ss_pred ECCCC-CCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919 306 QCPNP-DFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 343 (416)
Q Consensus 306 ~fpdp-w~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~ 343 (416)
..... |. .. ....+|++++++|+|||++++.
T Consensus 222 ~~~lh~~~-~~------~~~~il~~~~~~L~pgG~l~i~ 253 (306)
T TIGR02716 222 CRILYSAN-EQ------LSTIMCKKAFDAMRSGGRLLIL 253 (306)
T ss_pred EhhhhcCC-hH------HHHHHHHHHHHhcCCCCEEEEE
Confidence 53211 21 10 1137899999999999999885
No 97
>PRK03612 spermidine synthase; Provisional
Probab=99.02 E-value=4.4e-09 Score=111.11 Aligned_cols=125 Identities=16% Similarity=0.194 Sum_probs=95.5
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCC-CeEEEEchHHHHHHHHHHh-----------CCCcEEEEEcChhhhhhhhhccCC
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRKD-LNFLGLELVTHCRDSLQLS-----------GITNGYFIATNATSTFRSIVASYP 297 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p~-~~~iGvD~~~~a~~~a~~~-----------~l~nv~f~~~Da~~l~~~~~~~~~ 297 (416)
+..+|||||||+|..+..+++ +|. .+++++|+.+...+.++++ .-++++++.+|+.+.+.. .+
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~-~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~----~~ 371 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLK-YPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRK----LA 371 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHh-CCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHh----CC
Confidence 467899999999999999887 455 7999999877666655541 125799999999987542 35
Q ss_pred CceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCc----HHHHHHHHHHHHhCCC
Q 014919 298 GKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI----EEVMLRMKQQFLEYGK 362 (416)
Q Consensus 298 ~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~----~~~~~~~~~~~~~~~~ 362 (416)
++||.|++++|||+... ..++...+|++.+.+.|+|||.+.+++.. .+.+..+.+.+++.++
T Consensus 372 ~~fDvIi~D~~~~~~~~---~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf 437 (521)
T PRK03612 372 EKFDVIIVDLPDPSNPA---LGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGL 437 (521)
T ss_pred CCCCEEEEeCCCCCCcc---hhccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCC
Confidence 78999999999987322 12456679999999999999999987532 3445566777888776
No 98
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.01 E-value=5.3e-09 Score=99.82 Aligned_cols=120 Identities=16% Similarity=0.205 Sum_probs=96.9
Q ss_pred CCCeEEEEeccccHHHHHHHHh-CCCCeEEEEch----HHHHHHHHHHhCCC-cEEEEEcChhhhhhhhhcc-CCCceeE
Q 014919 230 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLEL----VTHCRDSLQLSGIT-NGYFIATNATSTFRSIVAS-YPGKLIL 302 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~-~p~~~~iGvD~----~~~a~~~a~~~~l~-nv~f~~~Da~~l~~~~~~~-~~~s~D~ 302 (416)
.+.+|||-|.|+|.++..||+. .|.-+++..|. ...|+++.+..++. |+.+.+.|+..- -|+. .+..+|.
T Consensus 40 pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~---g~~~~~~~~~Da 116 (247)
T PF08704_consen 40 PGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEE---GFDEELESDFDA 116 (247)
T ss_dssp TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG-----STT-TTSEEE
T ss_pred CCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecc---cccccccCcccE
Confidence 3799999999999999999975 68899999995 56778888888885 899999999642 1210 1467999
Q ss_pred EEEECCCCCCCCcchhhhhhhHHHHHHHHhhc-cCCcEEEEEeCcHHHHHHHHHHHHhCCCCce
Q 014919 303 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLL-VHDGKVFLQSDIEEVMLRMKQQFLEYGKGKL 365 (416)
Q Consensus 303 v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~L-kpgG~l~l~tD~~~~~~~~~~~~~~~~~~~~ 365 (416)
|++-.|+|| ..+..+.++| +|||.+.+-+.+-+....+.+.+++++|..+
T Consensus 117 vfLDlp~Pw-------------~~i~~~~~~L~~~gG~i~~fsP~ieQv~~~~~~L~~~gf~~i 167 (247)
T PF08704_consen 117 VFLDLPDPW-------------EAIPHAKRALKKPGGRICCFSPCIEQVQKTVEALREHGFTDI 167 (247)
T ss_dssp EEEESSSGG-------------GGHHHHHHHE-EEEEEEEEEESSHHHHHHHHHHHHHTTEEEE
T ss_pred EEEeCCCHH-------------HHHHHHHHHHhcCCceEEEECCCHHHHHHHHHHHHHCCCeee
Confidence 999999999 6788999999 9999999988888889999999999987543
No 99
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.00 E-value=3.3e-09 Score=99.85 Aligned_cols=100 Identities=15% Similarity=0.183 Sum_probs=75.7
Q ss_pred CCeEEEEeccccHHHHHHHHhCC-CCeEEEEchHHHHHHHHHH----hCC-CcEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919 231 QPLVVDIGSGNGLFLLGMARKRK-DLNFLGLELVTHCRDSLQL----SGI-TNGYFIATNATSTFRSIVASYPGKLILVS 304 (416)
Q Consensus 231 ~~~vLDIGCG~G~~~~~lA~~~p-~~~~iGvD~~~~a~~~a~~----~~l-~nv~f~~~Da~~l~~~~~~~~~~s~D~v~ 304 (416)
+.+|||||||+|.++..+++..| +.+++|+|++..+.+.+++ .+. .++.++.+|+.+. +..++++|.|+
T Consensus 52 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~~D~I~ 126 (239)
T PRK00216 52 GDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEAL-----PFPDNSFDAVT 126 (239)
T ss_pred CCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccC-----CCCCCCccEEE
Confidence 57899999999999999999987 7899999986655554433 223 4699999999875 22467899998
Q ss_pred EECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919 305 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 343 (416)
Q Consensus 305 ~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~ 343 (416)
+.+.-.+... ...+++.+.+.|+|||.+++.
T Consensus 127 ~~~~l~~~~~--------~~~~l~~~~~~L~~gG~li~~ 157 (239)
T PRK00216 127 IAFGLRNVPD--------IDKALREMYRVLKPGGRLVIL 157 (239)
T ss_pred EecccccCCC--------HHHHHHHHHHhccCCcEEEEE
Confidence 7643222111 147899999999999998874
No 100
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.00 E-value=2.2e-09 Score=100.93 Aligned_cols=96 Identities=20% Similarity=0.184 Sum_probs=71.9
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHH-HhCC---------------CcEEEEEcChhhhhhhhh
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ-LSGI---------------TNGYFIATNATSTFRSIV 293 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~-~~~l---------------~nv~f~~~Da~~l~~~~~ 293 (416)
.+.+|||+|||.|..++.||++ +++|+|||++..|++++. ++++ .+|++.++|+.++...
T Consensus 37 ~~~rvL~~gCG~G~da~~LA~~--G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~-- 112 (218)
T PRK13255 37 AGSRVLVPLCGKSLDMLWLAEQ--GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAA-- 112 (218)
T ss_pred CCCeEEEeCCCChHhHHHHHhC--CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcc--
Confidence 3579999999999999999986 889999999999888753 3333 3689999999887211
Q ss_pred ccCCCceeEEE-----EECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEE
Q 014919 294 ASYPGKLILVS-----IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 342 (416)
Q Consensus 294 ~~~~~s~D~v~-----~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l 342 (416)
..+.||.|+ +.+| | . ..+.+++.+.++|+|||++++
T Consensus 113 --~~~~fd~v~D~~~~~~l~-~-----~-----~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 113 --DLADVDAVYDRAALIALP-E-----E-----MRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred --cCCCeeEEEehHhHhhCC-H-----H-----HHHHHHHHHHHHcCCCCeEEE
Confidence 124678876 2222 1 1 125899999999999997555
No 101
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=98.99 E-value=2.7e-09 Score=99.38 Aligned_cols=97 Identities=12% Similarity=0.098 Sum_probs=72.6
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCCC
Q 014919 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNP 310 (416)
Q Consensus 231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdp 310 (416)
...|||||||+|.++..|++..|..+++|+|++..+++.++++ .+++.+.++|+.+. + .+++||.|+++..-.
T Consensus 44 ~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~-~~~~~~~~~d~~~~----~--~~~sfD~V~~~~vL~ 116 (204)
T TIGR03587 44 IASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAY-LPNINIIQGSLFDP----F--KDNFFDLVLTKGVLI 116 (204)
T ss_pred CCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhh-CCCCcEEEeeccCC----C--CCCCEEEEEECChhh
Confidence 5689999999999999999988889999999999988887653 45788888887652 2 578999998764332
Q ss_pred CCCCcchhhhhhhHHHHHHHHhhccCCcEEEE
Q 014919 311 DFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 342 (416)
Q Consensus 311 w~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l 342 (416)
+.. + -....+++++.|++ ++.+++
T Consensus 117 hl~-p-----~~~~~~l~el~r~~--~~~v~i 140 (204)
T TIGR03587 117 HIN-P-----DNLPTAYRELYRCS--NRYILI 140 (204)
T ss_pred hCC-H-----HHHHHHHHHHHhhc--CcEEEE
Confidence 211 1 01247888888887 345555
No 102
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=98.99 E-value=1.1e-08 Score=100.40 Aligned_cols=115 Identities=14% Similarity=0.179 Sum_probs=81.7
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHH----HHHHHhCCC-cEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCR----DSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVS 304 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~----~~a~~~~l~-nv~f~~~Da~~l~~~~~~~~~~s~D~v~ 304 (416)
.+.+|||+|||+|.+++.+++. +..+++|+|++..++ +++..+++. ++.+...+.... .+++||.|+
T Consensus 159 ~g~~VLDvGcGsG~lai~aa~~-g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~-------~~~~fDlVv 230 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAALKL-GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQP-------IEGKADVIV 230 (288)
T ss_pred CCCEEEEeCCChhHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccc-------cCCCceEEE
Confidence 3689999999999999888865 456899999765544 444445554 366666663221 357899999
Q ss_pred EECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCCc
Q 014919 305 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGK 364 (416)
Q Consensus 305 ~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~~ 364 (416)
++..-. ....++.++.++|||||.++++.-.......+.+.++++ |..
T Consensus 231 an~~~~-----------~l~~ll~~~~~~LkpgG~li~sgi~~~~~~~v~~~~~~~-f~~ 278 (288)
T TIGR00406 231 ANILAE-----------VIKELYPQFSRLVKPGGWLILSGILETQAQSVCDAYEQG-FTV 278 (288)
T ss_pred EecCHH-----------HHHHHHHHHHHHcCCCcEEEEEeCcHhHHHHHHHHHHcc-Cce
Confidence 874311 114788999999999999999765555566677777765 543
No 103
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.97 E-value=1.3e-09 Score=105.56 Aligned_cols=102 Identities=18% Similarity=0.217 Sum_probs=74.1
Q ss_pred CCeEEEEeccccHH----HHHHHHhCC-----CCeEEEEchHHHHHHHHHHhC--------C------------------
Q 014919 231 QPLVVDIGSGNGLF----LLGMARKRK-----DLNFLGLELVTHCRDSLQLSG--------I------------------ 275 (416)
Q Consensus 231 ~~~vLDIGCG~G~~----~~~lA~~~p-----~~~~iGvD~~~~a~~~a~~~~--------l------------------ 275 (416)
..+|+|+|||+|.- ++.+++..| +.+++|+|++..+++.|++.- +
T Consensus 100 ~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v 179 (264)
T smart00138 100 RVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYRV 179 (264)
T ss_pred CEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEEE
Confidence 46899999999974 455566544 578999999888877765421 1
Q ss_pred -----CcEEEEEcChhhhhhhhhccCCCceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919 276 -----TNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 343 (416)
Q Consensus 276 -----~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~ 343 (416)
.+|+|.+.|+.+. +.+.++||.|++...-.++... ....++++++++|+|||.|++.
T Consensus 180 ~~~ir~~V~F~~~dl~~~-----~~~~~~fD~I~crnvl~yf~~~------~~~~~l~~l~~~L~pGG~L~lg 241 (264)
T smart00138 180 KPELKERVRFAKHNLLAE-----SPPLGDFDLIFCRNVLIYFDEP------TQRKLLNRFAEALKPGGYLFLG 241 (264)
T ss_pred ChHHhCcCEEeeccCCCC-----CCccCCCCEEEechhHHhCCHH------HHHHHHHHHHHHhCCCeEEEEE
Confidence 3689999999875 2246789999875433332211 1247899999999999999995
No 104
>PTZ00146 fibrillarin; Provisional
Probab=98.97 E-value=1.3e-08 Score=98.88 Aligned_cols=124 Identities=15% Similarity=0.101 Sum_probs=85.6
Q ss_pred CCCeEEEEeccccHHHHHHHHhC-CCCeEEEEchHHHHHHHHHH--hCCCcEEEEEcChhhhhhhhhccCCCceeEEEEE
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLELVTHCRDSLQL--SGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 306 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~-p~~~~iGvD~~~~a~~~a~~--~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~ 306 (416)
.+.+|||+|||+|.++..+|... |.-.|+++|++.++.+.+.+ ...+||.++.+|+.......+ ..+++|+|++.
T Consensus 132 pG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~--~~~~vDvV~~D 209 (293)
T PTZ00146 132 PGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRM--LVPMVDVIFAD 209 (293)
T ss_pred CCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhc--ccCCCCEEEEe
Confidence 46799999999999999999986 45689999987654432211 123799999999865311111 24589999988
Q ss_pred CCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe-----Cc----HHHHHHHHHHHHhCCCCce
Q 014919 307 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS-----DI----EEVMLRMKQQFLEYGKGKL 365 (416)
Q Consensus 307 fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t-----D~----~~~~~~~~~~~~~~~~~~~ 365 (416)
...||. ...++.++.+.|||||.|++.. |. +..+.+-++.|++.+|...
T Consensus 210 va~pdq----------~~il~~na~r~LKpGG~~vI~ika~~id~g~~pe~~f~~ev~~L~~~GF~~~ 267 (293)
T PTZ00146 210 VAQPDQ----------ARIVALNAQYFLKNGGHFIISIKANCIDSTAKPEVVFASEVQKLKKEGLKPK 267 (293)
T ss_pred CCCcch----------HHHHHHHHHHhccCCCEEEEEEeccccccCCCHHHHHHHHHHHHHHcCCceE
Confidence 766651 1255678999999999999852 22 2223333477888887644
No 105
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=98.96 E-value=9.1e-09 Score=98.77 Aligned_cols=111 Identities=19% Similarity=0.253 Sum_probs=77.5
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHH----HHhCC-CcEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL----QLSGI-TNGYFIATNATSTFRSIVASYPGKLILVS 304 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a----~~~~l-~nv~f~~~Da~~l~~~~~~~~~~s~D~v~ 304 (416)
.+.+|||+|||+|..++.+++..+ .+++|+|++..+++.+ +.+++ .++.+.. .+.+||.|+
T Consensus 119 ~~~~VLDiGcGsG~l~i~~~~~g~-~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~-------------~~~~fD~Vv 184 (250)
T PRK00517 119 PGKTVLDVGCGSGILAIAAAKLGA-KKVLAVDIDPQAVEAARENAELNGVELNVYLPQ-------------GDLKADVIV 184 (250)
T ss_pred CCCEEEEeCCcHHHHHHHHHHcCC-CeEEEEECCHHHHHHHHHHHHHcCCCceEEEcc-------------CCCCcCEEE
Confidence 468999999999999888776543 4699999866555544 33444 2222211 122699998
Q ss_pred EECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCCce
Q 014919 305 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKL 365 (416)
Q Consensus 305 ~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~~~ 365 (416)
++.... ....+++++.++|||||.++++.-.....+.+.+.+.++++...
T Consensus 185 ani~~~-----------~~~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~~~l~~~Gf~~~ 234 (250)
T PRK00517 185 ANILAN-----------PLLELAPDLARLLKPGGRLILSGILEEQADEVLEAYEEAGFTLD 234 (250)
T ss_pred EcCcHH-----------HHHHHHHHHHHhcCCCcEEEEEECcHhhHHHHHHHHHHCCCEEE
Confidence 874211 12478899999999999999975555556677888888888654
No 106
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.94 E-value=3.1e-09 Score=111.08 Aligned_cols=103 Identities=18% Similarity=0.241 Sum_probs=77.8
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHH-h-CCCcEEEEEcChhhhhhhhhccCCCceeEEEEEC
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL-S-GITNGYFIATNATSTFRSIVASYPGKLILVSIQC 307 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~-~-~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~f 307 (416)
.+..+||||||+|.++..+++.. .+++|+|++..+++.+.. . ..+|++++++|+... . +++++++||.|++++
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~~--~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~-~--~~~~~~~fD~I~~~~ 111 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKKA--GQVIALDFIESVIKKNESINGHYKNVKFMCADVTSP-D--LNISDGSVDLIFSNW 111 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHhccCCceEEEEeccccc-c--cCCCCCCEEEEehhh
Confidence 35789999999999999999874 489999988777765442 2 246899999999643 1 133578999999886
Q ss_pred CCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919 308 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 343 (416)
Q Consensus 308 pdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~ 343 (416)
+-.|.... ....++++++++|||||.+++.
T Consensus 112 ~l~~l~~~------~~~~~l~~~~r~Lk~gG~l~~~ 141 (475)
T PLN02336 112 LLMYLSDK------EVENLAERMVKWLKVGGYIFFR 141 (475)
T ss_pred hHHhCCHH------HHHHHHHHHHHhcCCCeEEEEE
Confidence 54443211 0148899999999999999884
No 107
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.94 E-value=1.3e-08 Score=92.71 Aligned_cols=153 Identities=13% Similarity=0.171 Sum_probs=102.6
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCC
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN 309 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpd 309 (416)
.+.+|||+|||.|.++..|.+. .++..+|+|+.......+.++|+ .++++|+.+-+.. | ++++||.|.++-.-
T Consensus 13 pgsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv~rGv---~Viq~Dld~gL~~-f--~d~sFD~VIlsqtL 85 (193)
T PF07021_consen 13 PGSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACVARGV---SVIQGDLDEGLAD-F--PDQSFDYVILSQTL 85 (193)
T ss_pred CCCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHHHcCC---CEEECCHHHhHhh-C--CCCCccEEehHhHH
Confidence 3789999999999999888875 68999999998777777766675 5889999887552 3 69999999876211
Q ss_pred CCCCCcchhhhhhh-HHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCCceeeecc-ccccccCCCCCCCCCCC
Q 014919 310 PDFNRPEHRWRMVQ-RSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQD-ECDTKTNQGGWLGENSF 387 (416)
Q Consensus 310 pw~k~~h~krRl~~-~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~~~~~~~~~~~~~~ 387 (416)
. + +.+ ...|+++. +-|...+++..+-.|...-.+.+-. |.-. ++.. || .|...++.
T Consensus 86 Q------~---~~~P~~vL~Eml---RVgr~~IVsFPNFg~W~~R~~l~~~-GrmP--vt~~lPy-------~WYdTPNi 143 (193)
T PF07021_consen 86 Q------A---VRRPDEVLEEML---RVGRRAIVSFPNFGHWRNRLQLLLR-GRMP--VTKALPY-------EWYDTPNI 143 (193)
T ss_pred H------h---HhHHHHHHHHHH---HhcCeEEEEecChHHHHHHHHHHhc-CCCC--CCCCCCC-------cccCCCCc
Confidence 1 1 111 25566664 4477777877776666655554433 2211 1111 12 34444444
Q ss_pred CCCC--HHHHHHHHCCCCeEEEEEEe
Q 014919 388 GVRS--DWEQHVIDRGAPMYRLMLSK 411 (416)
Q Consensus 388 ~~~T--~~E~k~~~~G~~i~~~~~~k 411 (416)
...| .||....+.|..|-+-.+..
T Consensus 144 h~~Ti~DFe~lc~~~~i~I~~~~~~~ 169 (193)
T PF07021_consen 144 HLCTIKDFEDLCRELGIRIEERVFLD 169 (193)
T ss_pred ccccHHHHHHHHHHCCCEEEEEEEEc
Confidence 4444 58999999999997766644
No 108
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=98.94 E-value=9e-10 Score=103.94 Aligned_cols=105 Identities=16% Similarity=0.236 Sum_probs=75.4
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhC----C--C----cEEEEEcChhhhhhhhhccCCCce
Q 014919 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSG----I--T----NGYFIATNATSTFRSIVASYPGKL 300 (416)
Q Consensus 231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~----l--~----nv~f~~~Da~~l~~~~~~~~~~s~ 300 (416)
+..|||+|||+|-.+..||+. ..+|+|||++..+++-|+++. . . .++|.+.|++.+ .+.|
T Consensus 90 g~~ilDvGCGgGLLSepLArl--ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~--------~~~f 159 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARL--GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL--------TGKF 159 (282)
T ss_pred CceEEEeccCccccchhhHhh--CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc--------cccc
Confidence 467999999999999999998 689999998766665554321 1 1 266777777765 3459
Q ss_pred eEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHH
Q 014919 301 ILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRM 353 (416)
Q Consensus 301 D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~ 353 (416)
|.|.+.-.--+.++ -..|++.+.+.|||||.+++.|-+....-+.
T Consensus 160 DaVvcsevleHV~d--------p~~~l~~l~~~lkP~G~lfittinrt~lS~~ 204 (282)
T KOG1270|consen 160 DAVVCSEVLEHVKD--------PQEFLNCLSALLKPNGRLFITTINRTILSFA 204 (282)
T ss_pred ceeeeHHHHHHHhC--------HHHHHHHHHHHhCCCCceEeeehhhhHHHhh
Confidence 99976511110011 1489999999999999999998776554433
No 109
>PLN02366 spermidine synthase
Probab=98.93 E-value=1.6e-08 Score=99.74 Aligned_cols=124 Identities=15% Similarity=0.145 Sum_probs=88.7
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHH----h--CC--CcEEEEEcChhhhhhhhhccCCCcee
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL----S--GI--TNGYFIATNATSTFRSIVASYPGKLI 301 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~----~--~l--~nv~f~~~Da~~l~~~~~~~~~~s~D 301 (416)
+..+||+||||.|..+..+++..+..+++.+|+.....+.+++ . ++ ++++++.+|+...+.+. ++++||
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~---~~~~yD 167 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNA---PEGTYD 167 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhc---cCCCCC
Confidence 4688999999999999999876334689999964443333322 1 22 47999999998875421 256899
Q ss_pred EEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCc----HHHHHHHHHHHHhC
Q 014919 302 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI----EEVMLRMKQQFLEY 360 (416)
Q Consensus 302 ~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~----~~~~~~~~~~~~~~ 360 (416)
.|++..++|+.. -..+..++|++.++++|+|||.+..+... .+.+..+.+.+.+.
T Consensus 168 vIi~D~~dp~~~----~~~L~t~ef~~~~~~~L~pgGvlv~q~~s~~~~~~~~~~i~~tl~~~ 226 (308)
T PLN02366 168 AIIVDSSDPVGP----AQELFEKPFFESVARALRPGGVVCTQAESMWLHMDLIEDLIAICRET 226 (308)
T ss_pred EEEEcCCCCCCc----hhhhhHHHHHHHHHHhcCCCcEEEECcCCcccchHHHHHHHHHHHHH
Confidence 999988888742 22466789999999999999999876543 33344455555554
No 110
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.93 E-value=4.6e-09 Score=102.22 Aligned_cols=127 Identities=14% Similarity=0.220 Sum_probs=91.2
Q ss_pred ccccccccCCCCCCeEEEEeccccHHHHHHHHhCCCCeEEEEchH----HHHHHHHHHhCCCc-EEEEEcChhhhhhhhh
Q 014919 219 DIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELV----THCRDSLQLSGITN-GYFIATNATSTFRSIV 293 (416)
Q Consensus 219 ~~~~~~~f~~~~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~----~~a~~~a~~~~l~n-v~f~~~Da~~l~~~~~ 293 (416)
++.|.+.+.. .+..+||+|||+|.+++..++.. ...++|+|+. ..|+++++.++.++ ++....+....
T Consensus 152 cL~~Le~~~~-~g~~vlDvGcGSGILaIAa~kLG-A~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~----- 224 (300)
T COG2264 152 CLEALEKLLK-KGKTVLDVGCGSGILAIAAAKLG-AKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEV----- 224 (300)
T ss_pred HHHHHHHhhc-CCCEEEEecCChhHHHHHHHHcC-CceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhh-----
Confidence 4556666655 58999999999999999988874 4579999974 44555666667654 22222232222
Q ss_pred ccCCCceeEEEEEC-CCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCCce
Q 014919 294 ASYPGKLILVSIQC-PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKL 365 (416)
Q Consensus 294 ~~~~~s~D~v~~~f-pdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~~~ 365 (416)
+ ..+.||.|..|- .+| ...+...+.+.|||||++.++---.++.+...+.+.+++|...
T Consensus 225 ~-~~~~~DvIVANILA~v------------l~~La~~~~~~lkpgg~lIlSGIl~~q~~~V~~a~~~~gf~v~ 284 (300)
T COG2264 225 P-ENGPFDVIVANILAEV------------LVELAPDIKRLLKPGGRLILSGILEDQAESVAEAYEQAGFEVV 284 (300)
T ss_pred c-ccCcccEEEehhhHHH------------HHHHHHHHHHHcCCCceEEEEeehHhHHHHHHHHHHhCCCeEe
Confidence 1 236899999883 122 2378899999999999999987777787777888888888754
No 111
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.93 E-value=6e-09 Score=102.73 Aligned_cols=109 Identities=11% Similarity=0.130 Sum_probs=71.2
Q ss_pred CCeEEEEeccccHHHHHHHHhCC-CCeEEEEchHHHHHHHHHHh---CC--CcEEEEEcChhhhhhhhhc-cCCCceeEE
Q 014919 231 QPLVVDIGSGNGLFLLGMARKRK-DLNFLGLELVTHCRDSLQLS---GI--TNGYFIATNATSTFRSIVA-SYPGKLILV 303 (416)
Q Consensus 231 ~~~vLDIGCG~G~~~~~lA~~~p-~~~~iGvD~~~~a~~~a~~~---~l--~nv~f~~~Da~~l~~~~~~-~~~~s~D~v 303 (416)
+..|||+|||+|..+..|+++.+ ..+|+|+|++..+++.+.++ .. -++.++++|+.+.++ ..+ ........+
T Consensus 64 ~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~-~~~~~~~~~~~~~ 142 (301)
T TIGR03438 64 GCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLA-LPPEPAAGRRLGF 142 (301)
T ss_pred CCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhh-hhcccccCCeEEE
Confidence 57899999999999999999876 68999999877665544321 22 247789999976422 110 000122223
Q ss_pred EEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCc
Q 014919 304 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI 346 (416)
Q Consensus 304 ~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~ 346 (416)
++..+..++.. --...+|++++++|+|||.|++..|.
T Consensus 143 ~~gs~~~~~~~------~e~~~~L~~i~~~L~pgG~~lig~d~ 179 (301)
T TIGR03438 143 FPGSTIGNFTP------EEAVAFLRRIRQLLGPGGGLLIGVDL 179 (301)
T ss_pred EecccccCCCH------HHHHHHHHHHHHhcCCCCEEEEeccC
Confidence 22222222211 11248999999999999999987653
No 112
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.93 E-value=4.9e-09 Score=96.51 Aligned_cols=124 Identities=17% Similarity=0.200 Sum_probs=89.3
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCC
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN 309 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpd 309 (416)
....|||||||+|-.+..|... +..++|+|++..+++.+.+..++ -.++.+|+-+- +|+.+++||.++..-.-
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~--Gh~wiGvDiSpsML~~a~~~e~e-gdlil~DMG~G----lpfrpGtFDg~ISISAv 122 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDS--GHQWIGVDISPSMLEQAVERELE-GDLILCDMGEG----LPFRPGTFDGVISISAV 122 (270)
T ss_pred CCcEEEEeccCCCcchheeccC--CceEEeecCCHHHHHHHHHhhhh-cCeeeeecCCC----CCCCCCccceEEEeeee
Confidence 4689999999999999888765 68999999988887776654444 45777887654 36689999987543222
Q ss_pred CCC-----CCcchhhhhhhHHHHHHHHhhccCCcEEEEEe--CcHHHHHHHHHHHHhCCC
Q 014919 310 PDF-----NRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS--DIEEVMLRMKQQFLEYGK 362 (416)
Q Consensus 310 pw~-----k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t--D~~~~~~~~~~~~~~~~~ 362 (416)
.|. ...++++|+. .|+..++.+|++|++..++. .++...+-+.++....||
T Consensus 123 QWLcnA~~s~~~P~~Rl~--~FF~tLy~~l~rg~raV~QfYpen~~q~d~i~~~a~~aGF 180 (270)
T KOG1541|consen 123 QWLCNADKSLHVPKKRLL--RFFGTLYSCLKRGARAVLQFYPENEAQIDMIMQQAMKAGF 180 (270)
T ss_pred eeecccCccccChHHHHH--HHhhhhhhhhccCceeEEEecccchHHHHHHHHHHHhhcc
Confidence 332 2344577775 89999999999999988873 444555555555555564
No 113
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.93 E-value=5.8e-09 Score=106.12 Aligned_cols=100 Identities=17% Similarity=0.101 Sum_probs=73.3
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhC-CCcEEEEEcChhhhhhhhhccCCCceeEEEEECC
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSG-ITNGYFIATNATSTFRSIVASYPGKLILVSIQCP 308 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~-l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fp 308 (416)
.+.+|||||||+|.++..+|+++ +++++|+|++..+++.++++. -.++++..+|..++ +++||.|+....
T Consensus 167 ~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l--------~~~fD~Ivs~~~ 237 (383)
T PRK11705 167 PGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDL--------NGQFDRIVSVGM 237 (383)
T ss_pred CCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhc--------CCCCCEEEEeCc
Confidence 46799999999999999999875 679999998877766654432 12588888887654 468999976532
Q ss_pred CCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919 309 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 344 (416)
Q Consensus 309 dpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t 344 (416)
-.+.... ..+.+++++.++|||||.+++.+
T Consensus 238 ~ehvg~~------~~~~~l~~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 238 FEHVGPK------NYRTYFEVVRRCLKPDGLFLLHT 267 (383)
T ss_pred hhhCChH------HHHHHHHHHHHHcCCCcEEEEEE
Confidence 2221111 12488999999999999999863
No 114
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.92 E-value=5.4e-08 Score=99.35 Aligned_cols=130 Identities=12% Similarity=0.117 Sum_probs=85.5
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHH----HHHHHhCCC--cEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCR----DSLQLSGIT--NGYFIATNATSTFRSIVASYPGKLILVS 304 (416)
Q Consensus 231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~----~~a~~~~l~--nv~f~~~Da~~l~~~~~~~~~~s~D~v~ 304 (416)
+.+|||+|||+|.+++.++.. ...+++++|++..+. ++++.++++ +++++++|+.+++...- ...++||.|+
T Consensus 221 g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~-~~~~~fDlVi 298 (396)
T PRK15128 221 NKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYR-DRGEKFDVIV 298 (396)
T ss_pred CCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHH-hcCCCCCEEE
Confidence 678999999999998876653 456999999765554 445556774 79999999988754321 1245899998
Q ss_pred EECCCCCCCCcch-hhhh--hhHHHHHHHHhhccCCcEEEEEeCc-----HHHHHHHHHHHHhCCCCc
Q 014919 305 IQCPNPDFNRPEH-RWRM--VQRSLVEAVSDLLVHDGKVFLQSDI-----EEVMLRMKQQFLEYGKGK 364 (416)
Q Consensus 305 ~~fpdpw~k~~h~-krRl--~~~~~l~~i~r~LkpgG~l~l~tD~-----~~~~~~~~~~~~~~~~~~ 364 (416)
++ .|.+..... .... -...+++...++|+|||.|+..|-. +.+.+-+.+...+.+...
T Consensus 299 lD--PP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~~aa~~~~~~~ 364 (396)
T PRK15128 299 MD--PPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDV 364 (396)
T ss_pred EC--CCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHHHHHHHHcCCeE
Confidence 86 333322211 1011 1346677889999999999876532 334443444555555543
No 115
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.91 E-value=1.2e-08 Score=105.52 Aligned_cols=114 Identities=16% Similarity=0.292 Sum_probs=82.0
Q ss_pred CCCeEEEEeccccHHHHHHHHhC-CCCeEEEEchHH----HHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLELVT----HCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS 304 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~-p~~~~iGvD~~~----~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~ 304 (416)
.+..|||+|||+|..+..+|+.. +...++++|++. .+.+++++.|++|++++++|+..+. ...+...++||.|+
T Consensus 252 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~-~~~~~~~~~fD~Vl 330 (434)
T PRK14901 252 PGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLL-ELKPQWRGYFDRIL 330 (434)
T ss_pred CcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcc-cccccccccCCEEE
Confidence 46899999999999999999875 456999999744 4555667788899999999998762 11111357899999
Q ss_pred EECCC----CCCCCcchhhhh----------hhHHHHHHHHhhccCCcEEEEEe
Q 014919 305 IQCPN----PDFNRPEHRWRM----------VQRSLVEAVSDLLVHDGKVFLQS 344 (416)
Q Consensus 305 ~~fpd----pw~k~~h~krRl----------~~~~~l~~i~r~LkpgG~l~l~t 344 (416)
+.-|- .+.+.+..+++. .+.++|+.+.+.|||||+|+.+|
T Consensus 331 ~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvyst 384 (434)
T PRK14901 331 LDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYAT 384 (434)
T ss_pred EeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 86331 111112112211 25788999999999999998875
No 116
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.91 E-value=1.4e-08 Score=80.92 Aligned_cols=99 Identities=16% Similarity=0.163 Sum_probs=74.6
Q ss_pred eEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHH----HhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECC
Q 014919 233 LVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ----LSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP 308 (416)
Q Consensus 233 ~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~----~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fp 308 (416)
+++|+|||+|.++..+++ .+..+++++|....+...++ .....+++++..|..+... . ..+++|.++++.+
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~d~i~~~~~ 75 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPP--E--ADESFDVIISDPP 75 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhcc--c--cCCceEEEEEccc
Confidence 479999999999999998 67889999998665554443 2345679999999987621 1 3568999998865
Q ss_pred CCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919 309 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 343 (416)
Q Consensus 309 dpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~ 343 (416)
..++ . .....+++.+.+.|+|||.+++.
T Consensus 76 ~~~~--~-----~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 76 LHHL--V-----EDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred eeeh--h-----hHHHHHHHHHHHHcCCCCEEEEE
Confidence 4431 0 12358899999999999999875
No 117
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.90 E-value=9.7e-09 Score=106.61 Aligned_cols=111 Identities=17% Similarity=0.167 Sum_probs=80.2
Q ss_pred CCCeEEEEeccccHHHHHHHHhC-CCCeEEEEchHHH----HHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLELVTH----CRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS 304 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~-p~~~~iGvD~~~~----a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~ 304 (416)
.+..|||+|||+|..+..+|+.. +...++|+|++.. +.+++++.+++|+.++++|+..+. ..+ .++||.|+
T Consensus 250 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~-~~~---~~~fD~Vl 325 (444)
T PRK14902 250 GGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVH-EKF---AEKFDKIL 325 (444)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCccccc-chh---cccCCEEE
Confidence 35789999999999999999875 6789999997544 455566678889999999998762 222 36899998
Q ss_pred EECCCC------------CCCCcchhhhh--hhHHHHHHHHhhccCCcEEEEEe
Q 014919 305 IQCPNP------------DFNRPEHRWRM--VQRSLVEAVSDLLVHDGKVFLQS 344 (416)
Q Consensus 305 ~~fpdp------------w~k~~h~krRl--~~~~~l~~i~r~LkpgG~l~l~t 344 (416)
++-|-. |......-.++ .+..+|+.+.++|||||.++.+|
T Consensus 326 ~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvyst 379 (444)
T PRK14902 326 VDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYST 379 (444)
T ss_pred EcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEc
Confidence 864311 11000000011 24578999999999999999775
No 118
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=98.90 E-value=5.1e-09 Score=95.57 Aligned_cols=106 Identities=11% Similarity=0.193 Sum_probs=73.5
Q ss_pred cCCCCCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHH--hCCCcEEEEEcChhhhhhhhhccCCCceeEE
Q 014919 226 YHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL--SGITNGYFIATNATSTFRSIVASYPGKLILV 303 (416)
Q Consensus 226 f~~~~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~--~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v 303 (416)
+++..-..+||+|||+|.++..||.+. -+++++|++..|++.+++ .+.+||+|++.|+.+.. +++.||+|
T Consensus 39 Lp~~ry~~alEvGCs~G~lT~~LA~rC--d~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~------P~~~FDLI 110 (201)
T PF05401_consen 39 LPRRRYRRALEVGCSIGVLTERLAPRC--DRLLAVDISPRALARARERLAGLPHVEWIQADVPEFW------PEGRFDLI 110 (201)
T ss_dssp HTTSSEEEEEEE--TTSHHHHHHGGGE--EEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT---------SS-EEEE
T ss_pred cCccccceeEecCCCccHHHHHHHHhh--CceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCC------CCCCeeEE
Confidence 344345789999999999999999985 489999999988888764 46789999999987652 47899999
Q ss_pred EEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919 304 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 344 (416)
Q Consensus 304 ~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t 344 (416)
++.-.--+..... ....++..+...|+|||.|++.+
T Consensus 111 V~SEVlYYL~~~~-----~L~~~l~~l~~~L~pgG~LV~g~ 146 (201)
T PF05401_consen 111 VLSEVLYYLDDAE-----DLRAALDRLVAALAPGGHLVFGH 146 (201)
T ss_dssp EEES-GGGSSSHH-----HHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEehHhHcCCCHH-----HHHHHHHHHHHHhCCCCEEEEEE
Confidence 8652211111111 11367899999999999999975
No 119
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=98.89 E-value=6.1e-09 Score=95.02 Aligned_cols=101 Identities=14% Similarity=0.099 Sum_probs=72.6
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHH----HHHHHHHhCCCcEE-EEEcChhhhhhhhhccCCCceeEEE
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTH----CRDSLQLSGITNGY-FIATNATSTFRSIVASYPGKLILVS 304 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~----a~~~a~~~~l~nv~-f~~~Da~~l~~~~~~~~~~s~D~v~ 304 (416)
....+||||||||.....+- --|...++++|-+++ +.+.+.++...++. |+.++.+++ ++ ++++|+|.|.
T Consensus 76 ~K~~vLEvgcGtG~Nfkfy~-~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l-~~---l~d~s~DtVV 150 (252)
T KOG4300|consen 76 GKGDVLEVGCGTGANFKFYP-WKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENL-PQ---LADGSYDTVV 150 (252)
T ss_pred CccceEEecccCCCCccccc-CCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcC-cc---cccCCeeeEE
Confidence 34568999999998865433 237889999996444 44555556666766 999999998 32 3689999986
Q ss_pred EECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919 305 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 343 (416)
Q Consensus 305 ~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~ 343 (416)
.-|.-.-..+. .+.|+++.|+|+|||+++|-
T Consensus 151 ~TlvLCSve~~--------~k~L~e~~rlLRpgG~iifi 181 (252)
T KOG4300|consen 151 CTLVLCSVEDP--------VKQLNEVRRLLRPGGRIIFI 181 (252)
T ss_pred EEEEEeccCCH--------HHHHHHHHHhcCCCcEEEEE
Confidence 54432211111 37899999999999999885
No 120
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=98.89 E-value=1.2e-08 Score=93.69 Aligned_cols=99 Identities=11% Similarity=0.174 Sum_probs=70.1
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHH----HHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDS----LQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 305 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~----a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~ 305 (416)
.+.++||||||.|+.++.||++ +..|+++|.+..++++ +++.+++ |+..+.|+.+. . .++.+|.|+.
T Consensus 30 ~~g~~LDlgcG~GRNalyLA~~--G~~VtAvD~s~~al~~l~~~a~~~~l~-i~~~~~Dl~~~-----~-~~~~yD~I~s 100 (192)
T PF03848_consen 30 KPGKALDLGCGEGRNALYLASQ--GFDVTAVDISPVALEKLQRLAEEEGLD-IRTRVADLNDF-----D-FPEEYDFIVS 100 (192)
T ss_dssp -SSEEEEES-TTSHHHHHHHHT--T-EEEEEESSHHHHHHHHHHHHHTT-T-EEEEE-BGCCB-----S--TTTEEEEEE
T ss_pred CCCcEEEcCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHhhcCce-eEEEEecchhc-----c-ccCCcCEEEE
Confidence 3679999999999999999998 8899999987666554 3445665 99999998765 2 2568999875
Q ss_pred ECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919 306 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 343 (416)
Q Consensus 306 ~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~ 343 (416)
...-.+. + |-..+.+++.+...++|||++++.
T Consensus 101 t~v~~fL-----~-~~~~~~i~~~m~~~~~pGG~~li~ 132 (192)
T PF03848_consen 101 TVVFMFL-----Q-RELRPQIIENMKAATKPGGYNLIV 132 (192)
T ss_dssp ESSGGGS-------GGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred EEEeccC-----C-HHHHHHHHHHHHhhcCCcEEEEEE
Confidence 4221111 1 112368899999999999998874
No 121
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.89 E-value=1.7e-08 Score=97.76 Aligned_cols=111 Identities=14% Similarity=0.138 Sum_probs=79.7
Q ss_pred CCCeEEEEeccccHHHHHHHHhCC-CCeEEEEchHH----HHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLELVT----HCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS 304 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p-~~~~iGvD~~~----~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~ 304 (416)
.+..|||+|||+|..+..+|+..+ ...++++|++. .+.+++++.++.|+.+++.|+..+ .. ..++||.|+
T Consensus 71 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~-~~----~~~~fD~Vl 145 (264)
T TIGR00446 71 PPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVF-GA----AVPKFDAIL 145 (264)
T ss_pred CcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHh-hh----hccCCCEEE
Confidence 367899999999999999998764 46899999754 445566677888999999999875 21 245699998
Q ss_pred EECCCC----CCCCcchh-----hhh-----hhHHHHHHHHhhccCCcEEEEEeC
Q 014919 305 IQCPNP----DFNRPEHR-----WRM-----VQRSLVEAVSDLLVHDGKVFLQSD 345 (416)
Q Consensus 305 ~~fpdp----w~k~~h~k-----rRl-----~~~~~l~~i~r~LkpgG~l~l~tD 345 (416)
+.-|-. |.+.+..+ +.+ .+.++|+.+.+.|||||+|+.+|-
T Consensus 146 ~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstc 200 (264)
T TIGR00446 146 LDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTC 200 (264)
T ss_pred EcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 863211 11111111 111 356799999999999999998863
No 122
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.89 E-value=2.6e-08 Score=96.77 Aligned_cols=123 Identities=13% Similarity=0.121 Sum_probs=87.7
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHH----h----CCCcEEEEEcChhhhhhhhhccCCCcee
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL----S----GITNGYFIATNATSTFRSIVASYPGKLI 301 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~----~----~l~nv~f~~~Da~~l~~~~~~~~~~s~D 301 (416)
++.+||+||||+|..+..+++..+..+++++|+.....+.+++ . ..++++++.+|+.+.+.. .+++||
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~----~~~~yD 147 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLAD----TENTFD 147 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHh----CCCCcc
Confidence 4569999999999999988877667789999975544443332 1 124689999999886542 257899
Q ss_pred EEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcH----HHHHHHHHHHHhC
Q 014919 302 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE----EVMLRMKQQFLEY 360 (416)
Q Consensus 302 ~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~----~~~~~~~~~~~~~ 360 (416)
+|++..++|+... ..+...+|++.+.+.|+|||.+.+.+... ..+..+.+.+.+.
T Consensus 148 vIi~D~~~~~~~~----~~l~~~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~tl~~~ 206 (270)
T TIGR00417 148 VIIVDSTDPVGPA----ETLFTKEFYELLKKALNEDGIFVAQSESPWIQLELITDLKRDVKEA 206 (270)
T ss_pred EEEEeCCCCCCcc----cchhHHHHHHHHHHHhCCCcEEEEcCCCcccCHHHHHHHHHHHHHH
Confidence 9999877776322 23455799999999999999999876543 2333334445443
No 123
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.88 E-value=1.8e-08 Score=104.03 Aligned_cols=111 Identities=16% Similarity=0.238 Sum_probs=78.9
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHH----HHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTH----CRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 305 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~----a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~ 305 (416)
.+..|||+|||+|..+..+++..++.+++|+|++.. +.+++++.++. ++++++|+.++ ...+ .+++||.|++
T Consensus 244 ~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~-~~~~~~D~~~~-~~~~--~~~~fD~Vl~ 319 (427)
T PRK10901 244 NGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLK-ATVIVGDARDP-AQWW--DGQPFDRILL 319 (427)
T ss_pred CCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEcCcccc-hhhc--ccCCCCEEEE
Confidence 467999999999999999999987789999997554 44445555664 78999999875 2222 3568999988
Q ss_pred ECCCC----CCCCcchhh----------hhhhHHHHHHHHhhccCCcEEEEEe
Q 014919 306 QCPNP----DFNRPEHRW----------RMVQRSLVEAVSDLLVHDGKVFLQS 344 (416)
Q Consensus 306 ~fpdp----w~k~~h~kr----------Rl~~~~~l~~i~r~LkpgG~l~l~t 344 (416)
+-|-. +.+.+..++ .-.+..+|+.+.+.|||||.++++|
T Consensus 320 D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvyst 372 (427)
T PRK10901 320 DAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYAT 372 (427)
T ss_pred CCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 64311 000000000 0124689999999999999999876
No 124
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.87 E-value=1.9e-08 Score=93.99 Aligned_cols=95 Identities=15% Similarity=0.198 Sum_probs=71.9
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHH----HHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVT----HCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 305 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~----~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~ 305 (416)
.+.+|||||||+|.++..+++.. .+++++|.+. .+.+++++.++.|+.+.++|+.+.+ + ..++||.|++
T Consensus 78 ~~~~VLeiG~GsG~~t~~la~~~--~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----~-~~~~fD~I~~ 150 (212)
T PRK00312 78 PGDRVLEIGTGSGYQAAVLAHLV--RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGW----P-AYAPFDRILV 150 (212)
T ss_pred CCCEEEEECCCccHHHHHHHHHh--CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCC----C-cCCCcCEEEE
Confidence 36799999999999999888875 3799999644 4455555668889999999986531 1 2478999998
Q ss_pred ECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeC
Q 014919 306 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD 345 (416)
Q Consensus 306 ~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD 345 (416)
..+-+ .+.+.+.+.|+|||.+++...
T Consensus 151 ~~~~~--------------~~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 151 TAAAP--------------EIPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred ccCch--------------hhhHHHHHhcCCCcEEEEEEc
Confidence 74322 234567889999999998654
No 125
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.85 E-value=2.9e-08 Score=94.42 Aligned_cols=101 Identities=17% Similarity=0.213 Sum_probs=77.2
Q ss_pred CCeEEEEeccccHHHHHHHHhCC-CCeEEEEchHH----HHHHHHHHhCCC-cEEEEEcChhhhhhhhhcc-CCCceeEE
Q 014919 231 QPLVVDIGSGNGLFLLGMARKRK-DLNFLGLELVT----HCRDSLQLSGIT-NGYFIATNATSTFRSIVAS-YPGKLILV 303 (416)
Q Consensus 231 ~~~vLDIGCG~G~~~~~lA~~~p-~~~~iGvD~~~----~a~~~a~~~~l~-nv~f~~~Da~~l~~~~~~~-~~~s~D~v 303 (416)
..+|||||||+|..++.+|+..| +.+++++|+.. .|++++++.++. +++++.+|+.+.++...+. +.++||.|
T Consensus 69 ~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~V 148 (234)
T PLN02781 69 AKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDFA 148 (234)
T ss_pred CCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCEE
Confidence 67899999999999999998755 68999999754 455556667775 6999999999876543221 24689999
Q ss_pred EEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEE
Q 014919 304 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 342 (416)
Q Consensus 304 ~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l 342 (416)
++. .+ | . .+..+++.+.+.|+|||.+++
T Consensus 149 fiD---a~-k-~------~y~~~~~~~~~ll~~GG~ii~ 176 (234)
T PLN02781 149 FVD---AD-K-P------NYVHFHEQLLKLVKVGGIIAF 176 (234)
T ss_pred EEC---CC-H-H------HHHHHHHHHHHhcCCCeEEEE
Confidence 874 32 1 1 124789999999999999886
No 126
>PRK06202 hypothetical protein; Provisional
Probab=98.85 E-value=1.2e-08 Score=96.53 Aligned_cols=100 Identities=14% Similarity=0.102 Sum_probs=72.5
Q ss_pred CCCeEEEEeccccHHHHHHHHh----CCCCeEEEEchHHHHHHHHHHhC-CCcEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919 230 AQPLVVDIGSGNGLFLLGMARK----RKDLNFLGLELVTHCRDSLQLSG-ITNGYFIATNATSTFRSIVASYPGKLILVS 304 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~----~p~~~~iGvD~~~~a~~~a~~~~-l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~ 304 (416)
...+|||||||+|.++..|++. .|+.+++|+|++..+++.+++.. ..|+.+.+.++..+ +..++++|.|+
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l-----~~~~~~fD~V~ 134 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDEL-----VAEGERFDVVT 134 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccc-----cccCCCccEEE
Confidence 3578999999999999988864 45679999999888887765542 34678877777665 22467999999
Q ss_pred EECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEE
Q 014919 305 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 342 (416)
Q Consensus 305 ~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l 342 (416)
+++.-.|..+.. ...++++++|+++ |.+++
T Consensus 135 ~~~~lhh~~d~~------~~~~l~~~~r~~~--~~~~i 164 (232)
T PRK06202 135 SNHFLHHLDDAE------VVRLLADSAALAR--RLVLH 164 (232)
T ss_pred ECCeeecCChHH------HHHHHHHHHHhcC--eeEEE
Confidence 886544332211 1378999999998 44444
No 127
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.84 E-value=3e-08 Score=98.41 Aligned_cols=97 Identities=16% Similarity=0.169 Sum_probs=73.2
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCC-CeEEEEchHH----HHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRKD-LNFLGLELVT----HCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS 304 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p~-~~~iGvD~~~----~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~ 304 (416)
.+.+|||||||+|.++..+|+..+. ..++|+|.+. .|+++++..+.+|+.++++|+...+. ...+||.|+
T Consensus 80 ~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~-----~~~~fD~Ii 154 (322)
T PRK13943 80 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVP-----EFAPYDVIF 154 (322)
T ss_pred CCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhccc-----ccCCccEEE
Confidence 3679999999999999999998763 5799999754 45555566788899999999876521 235799998
Q ss_pred EECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeC
Q 014919 305 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD 345 (416)
Q Consensus 305 ~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD 345 (416)
+.+.-+ .....+.+.|+|||.+++..+
T Consensus 155 ~~~g~~--------------~ip~~~~~~LkpgG~Lvv~~~ 181 (322)
T PRK13943 155 VTVGVD--------------EVPETWFTQLKEGGRVIVPIN 181 (322)
T ss_pred ECCchH--------------HhHHHHHHhcCCCCEEEEEeC
Confidence 863311 233456789999999988654
No 128
>PLN02672 methionine S-methyltransferase
Probab=98.83 E-value=9.2e-08 Score=107.32 Aligned_cols=128 Identities=16% Similarity=0.153 Sum_probs=91.1
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHH----HHHhCC----------------CcEEEEEcChhhhhh
Q 014919 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDS----LQLSGI----------------TNGYFIATNATSTFR 290 (416)
Q Consensus 231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~----a~~~~l----------------~nv~f~~~Da~~l~~ 290 (416)
+..|||||||+|..++.+|+.+|..+++|+|++..|++. ++.+++ ++++|+++|..+.+.
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 358999999999999999999999999999987665544 433322 369999999876521
Q ss_pred hhhccCCCceeEEEEECCCCCCCCcch---------------------hhhh-----------hhHHHHHHHHhhccCCc
Q 014919 291 SIVASYPGKLILVSIQCPNPDFNRPEH---------------------RWRM-----------VQRSLVEAVSDLLVHDG 338 (416)
Q Consensus 291 ~~~~~~~~s~D~v~~~fpdpw~k~~h~---------------------krRl-----------~~~~~l~~i~r~LkpgG 338 (416)
+ ....||+|..| .|+...... ..-+ +...++++..++|+|||
T Consensus 199 ---~-~~~~fDlIVSN--PPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG 272 (1082)
T PLN02672 199 ---D-NNIELDRIVGC--IPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMG 272 (1082)
T ss_pred ---c-cCCceEEEEEC--CCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCC
Confidence 0 12369999988 344322110 0011 12577888999999999
Q ss_pred EEEEEeCcHHHHHHHH-HHHHhCCCCce
Q 014919 339 KVFLQSDIEEVMLRMK-QQFLEYGKGKL 365 (416)
Q Consensus 339 ~l~l~tD~~~~~~~~~-~~~~~~~~~~~ 365 (416)
.+++.+... ..+.+. +.+++.+|...
T Consensus 273 ~l~lEiG~~-q~~~v~~~l~~~~gf~~~ 299 (1082)
T PLN02672 273 IMIFNMGGR-PGQAVCERLFERRGFRIT 299 (1082)
T ss_pred EEEEEECcc-HHHHHHHHHHHHCCCCee
Confidence 999998754 567777 58888887543
No 129
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.82 E-value=3.5e-08 Score=101.94 Aligned_cols=112 Identities=14% Similarity=0.139 Sum_probs=81.2
Q ss_pred CCCeEEEEeccccHHHHHHHHhC-CCCeEEEEchHHH----HHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLELVTH----CRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS 304 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~-p~~~~iGvD~~~~----a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~ 304 (416)
.+..|||+|||+|..+..+|+.. +..+++++|++.. +.+++++.|++|++++++|+..+ +.. .+++||.|+
T Consensus 237 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l-~~~---~~~~fD~Vl 312 (431)
T PRK14903 237 PGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERL-TEY---VQDTFDRIL 312 (431)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhh-hhh---hhccCCEEE
Confidence 36789999999999999999875 5679999997544 44556667888999999999876 221 256899998
Q ss_pred EECCCC----CCCCcchhhh--------h--hhHHHHHHHHhhccCCcEEEEEeC
Q 014919 305 IQCPNP----DFNRPEHRWR--------M--VQRSLVEAVSDLLVHDGKVFLQSD 345 (416)
Q Consensus 305 ~~fpdp----w~k~~h~krR--------l--~~~~~l~~i~r~LkpgG~l~l~tD 345 (416)
+.-|-. +.+.+..+++ + .+.++|..+.+.|||||.++++|-
T Consensus 313 ~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTC 367 (431)
T PRK14903 313 VDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTC 367 (431)
T ss_pred ECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 863321 1111111111 1 356889999999999999999863
No 130
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.82 E-value=7.2e-08 Score=90.36 Aligned_cols=104 Identities=16% Similarity=0.185 Sum_probs=74.7
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHH----HHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEE
Q 014919 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRD----SLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 306 (416)
Q Consensus 231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~----~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~ 306 (416)
+..|||+|||+|.++..+++.. ..++|+|.+..+++ ++...+..++++.+.|+.++.. + .++++|.|+++
T Consensus 46 ~~~vLdlG~G~G~~~~~l~~~~--~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~---~-~~~~~D~i~~~ 119 (224)
T TIGR01983 46 GLRVLDVGCGGGLLSEPLARLG--ANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAE---K-GAKSFDVVTCM 119 (224)
T ss_pred CCeEEEECCCCCHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhc---C-CCCCccEEEeh
Confidence 5789999999999999998864 46999997654443 3334455579999999887621 1 24789999876
Q ss_pred CCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHH
Q 014919 307 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEE 348 (416)
Q Consensus 307 fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~ 348 (416)
..-.+... ...+++.+.++|+|||.+++.+....
T Consensus 120 ~~l~~~~~--------~~~~l~~~~~~L~~gG~l~i~~~~~~ 153 (224)
T TIGR01983 120 EVLEHVPD--------PQAFIRACAQLLKPGGILFFSTINRT 153 (224)
T ss_pred hHHHhCCC--------HHHHHHHHHHhcCCCcEEEEEecCCC
Confidence 32222111 13789999999999999998764433
No 131
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.81 E-value=5.2e-08 Score=101.14 Aligned_cols=122 Identities=20% Similarity=0.224 Sum_probs=87.3
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHH----HHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCR----DSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 305 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~----~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~ 305 (416)
.+..|||+|||+|.+++.+|+.. ..++|+|++..|+ ++++.++++|++|+++|+.+.+... ++.+++||.|++
T Consensus 297 ~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~-~~~~~~fD~Vi~ 373 (443)
T PRK13168 297 PGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQ-PWALGGFDKVLL 373 (443)
T ss_pred CCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhh-hhhcCCCCEEEE
Confidence 35799999999999999999885 6899999765554 4445567889999999998753211 123567999988
Q ss_pred ECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCCceee
Q 014919 306 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL 367 (416)
Q Consensus 306 ~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~~~~~ 367 (416)
+ .|+.. ..+.++.+.+ |+|++.+|++.+...+++.+. .|.+.++.+..+
T Consensus 374 d--PPr~g---------~~~~~~~l~~-~~~~~ivyvSCnp~tlaRDl~-~L~~~gY~l~~i 422 (443)
T PRK13168 374 D--PPRAG---------AAEVMQALAK-LGPKRIVYVSCNPATLARDAG-VLVEAGYRLKRA 422 (443)
T ss_pred C--cCCcC---------hHHHHHHHHh-cCCCeEEEEEeChHHhhccHH-HHhhCCcEEEEE
Confidence 5 23211 1245555555 699999999998888777655 455667765444
No 132
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.80 E-value=4.4e-08 Score=101.71 Aligned_cols=110 Identities=20% Similarity=0.151 Sum_probs=79.4
Q ss_pred CCCeEEEEeccccHHHHHHHHhCC-CCeEEEEchHHH----HHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLELVTH----CRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS 304 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p-~~~~iGvD~~~~----a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~ 304 (416)
.+..|||+|||+|..+..+|+..+ ..+++|+|++.. +.+++++.|++|++++++|+..+. ++++||.|+
T Consensus 250 ~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~------~~~~fD~Vl 323 (445)
T PRK14904 250 PGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS------PEEQPDAIL 323 (445)
T ss_pred CCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc------cCCCCCEEE
Confidence 367999999999999999998653 568999997544 455566778889999999998762 356899998
Q ss_pred EECCCC----CCCCcchhhh----------hhhHHHHHHHHhhccCCcEEEEEeC
Q 014919 305 IQCPNP----DFNRPEHRWR----------MVQRSLVEAVSDLLVHDGKVFLQSD 345 (416)
Q Consensus 305 ~~fpdp----w~k~~h~krR----------l~~~~~l~~i~r~LkpgG~l~l~tD 345 (416)
+.-|-. |.+.+..+++ -.+..+|..+.+.|||||+++++|-
T Consensus 324 ~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystc 378 (445)
T PRK14904 324 LDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATC 378 (445)
T ss_pred EcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 752210 0011111111 1245789999999999999999873
No 133
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=3.2e-08 Score=91.39 Aligned_cols=94 Identities=19% Similarity=0.278 Sum_probs=73.9
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEch----HHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL----VTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 305 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~----~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~ 305 (416)
.+..|||||||+|..+.-||+..- +|+.+|. ...|.++.+..|+.||.+.++|...-++ +...||.|++
T Consensus 72 ~g~~VLEIGtGsGY~aAvla~l~~--~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~-----~~aPyD~I~V 144 (209)
T COG2518 72 PGDRVLEIGTGSGYQAAVLARLVG--RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWP-----EEAPYDRIIV 144 (209)
T ss_pred CCCeEEEECCCchHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCC-----CCCCcCEEEE
Confidence 478999999999999999999854 9999995 4567777888899999999999977532 3478999987
Q ss_pred ECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919 306 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 344 (416)
Q Consensus 306 ~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t 344 (416)
.-.-|- .=+.+.+.|||||++.+-.
T Consensus 145 taaa~~--------------vP~~Ll~QL~~gGrlv~Pv 169 (209)
T COG2518 145 TAAAPE--------------VPEALLDQLKPGGRLVIPV 169 (209)
T ss_pred eeccCC--------------CCHHHHHhcccCCEEEEEE
Confidence 743221 1124567899999998843
No 134
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.76 E-value=8.2e-08 Score=89.43 Aligned_cols=102 Identities=20% Similarity=0.238 Sum_probs=78.6
Q ss_pred CCCeEEEEeccccHHHHHHHHhCC-CCeEEEEch----HHHHHHHHHHhCCC-cEEEEEcChhhhhhhhhcc-CCCceeE
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLEL----VTHCRDSLQLSGIT-NGYFIATNATSTFRSIVAS-YPGKLIL 302 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p-~~~~iGvD~----~~~a~~~a~~~~l~-nv~f~~~Da~~l~~~~~~~-~~~s~D~ 302 (416)
+...||||||++|..++.||+..| +.+++.+|. ...|++.+++.|+. +|+++.+|+.+.++...+. ..+.||.
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~ 124 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDF 124 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEE
T ss_pred CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeE
Confidence 368999999999999999999877 689999996 34566666677775 6999999999987654421 1358999
Q ss_pred EEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEE
Q 014919 303 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 342 (416)
Q Consensus 303 v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l 342 (416)
||+- .+ |+ -+..+++.+.+.|+|||.+++
T Consensus 125 VFiD---a~------K~--~y~~y~~~~~~ll~~ggvii~ 153 (205)
T PF01596_consen 125 VFID---AD------KR--NYLEYFEKALPLLRPGGVIIA 153 (205)
T ss_dssp EEEE---ST------GG--GHHHHHHHHHHHEEEEEEEEE
T ss_pred EEEc---cc------cc--chhhHHHHHhhhccCCeEEEE
Confidence 9885 32 11 135889999999999999987
No 135
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.76 E-value=2.8e-08 Score=92.78 Aligned_cols=96 Identities=18% Similarity=0.223 Sum_probs=71.2
Q ss_pred CCCeEEEEeccccHHHHHHHHhC-CCCeEEEEch----HHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLEL----VTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS 304 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~-p~~~~iGvD~----~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~ 304 (416)
.+.+|||||||+|.++..||... +...+++||. ...|.++.+..+..|+.++++|...-++ ....||.|+
T Consensus 72 pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~-----~~apfD~I~ 146 (209)
T PF01135_consen 72 PGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWP-----EEAPFDRII 146 (209)
T ss_dssp TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTG-----GG-SEEEEE
T ss_pred CCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccc-----cCCCcCEEE
Confidence 47899999999999999999874 4457999994 5667777778899999999999876532 246799999
Q ss_pred EECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919 305 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 344 (416)
Q Consensus 305 ~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t 344 (416)
+...-+ ..-..+.+.|++||++++-.
T Consensus 147 v~~a~~--------------~ip~~l~~qL~~gGrLV~pi 172 (209)
T PF01135_consen 147 VTAAVP--------------EIPEALLEQLKPGGRLVAPI 172 (209)
T ss_dssp ESSBBS--------------S--HHHHHTEEEEEEEEEEE
T ss_pred Eeeccc--------------hHHHHHHHhcCCCcEEEEEE
Confidence 875433 11235677899999999853
No 136
>PHA03412 putative methyltransferase; Provisional
Probab=98.74 E-value=6e-08 Score=91.51 Aligned_cols=100 Identities=15% Similarity=0.138 Sum_probs=74.3
Q ss_pred CCeEEEEeccccHHHHHHHHhC---CCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEEC
Q 014919 231 QPLVVDIGSGNGLFLLGMARKR---KDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQC 307 (416)
Q Consensus 231 ~~~vLDIGCG~G~~~~~lA~~~---p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~f 307 (416)
+.+|||+|||+|.+++.++++. +..+++|+|+...|.+.++++ ..++.++++|+... + .+++||.|+.|
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n-~~~~~~~~~D~~~~-----~-~~~~FDlIIsN- 121 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRI-VPEATWINADALTT-----E-FDTLFDMAISN- 121 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhh-ccCCEEEEcchhcc-----c-ccCCccEEEEC-
Confidence 5799999999999999999874 467999999988888877643 46789999998764 2 25689999998
Q ss_pred CCCCCCC--cchhhh----hhhHHHHHHHHhhccCCcE
Q 014919 308 PNPDFNR--PEHRWR----MVQRSLVEAVSDLLVHDGK 339 (416)
Q Consensus 308 pdpw~k~--~h~krR----l~~~~~l~~i~r~LkpgG~ 339 (416)
.|+.+. .+.+.| .+...+++...+++++|+.
T Consensus 122 -PPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 122 -PPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred -CCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 455422 221222 3456789999986666665
No 137
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.73 E-value=1.4e-08 Score=94.76 Aligned_cols=107 Identities=12% Similarity=0.231 Sum_probs=76.3
Q ss_pred eEEEEeccccHHHHHHHHhCCC--CeEEEEchHHHHHHHHHHhCC---CcEEEEEcChhhh-hhhhhccCCCceeEEEEE
Q 014919 233 LVVDIGSGNGLFLLGMARKRKD--LNFLGLELVTHCRDSLQLSGI---TNGYFIATNATST-FRSIVASYPGKLILVSIQ 306 (416)
Q Consensus 233 ~vLDIGCG~G~~~~~lA~~~p~--~~~iGvD~~~~a~~~a~~~~l---~nv~f~~~Da~~l-~~~~~~~~~~s~D~v~~~ 306 (416)
.|||||||.|.....+.+.+|+ ..+++.|.+.+|++..+++.. .++.-...|+..- +.. |...+++|.+++.
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~--~~~~~svD~it~I 151 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKE--PPEEGSVDIITLI 151 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccC--CCCcCccceEEEE
Confidence 7999999999999999998887 899999999999988765432 3344444454331 112 2257899998777
Q ss_pred CCCCC-CCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHH
Q 014919 307 CPNPD-FNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEV 349 (416)
Q Consensus 307 fpdpw-~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~ 349 (416)
|.-.- ++.. ....++.++++|||||.+++. |...|
T Consensus 152 FvLSAi~pek-------~~~a~~nl~~llKPGG~llfr-DYg~~ 187 (264)
T KOG2361|consen 152 FVLSAIHPEK-------MQSVIKNLRTLLKPGGSLLFR-DYGRY 187 (264)
T ss_pred EEEeccChHH-------HHHHHHHHHHHhCCCcEEEEe-ecccc
Confidence 64321 1111 137899999999999999995 54333
No 138
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.73 E-value=1.3e-07 Score=87.65 Aligned_cols=102 Identities=17% Similarity=0.161 Sum_probs=71.9
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHH----HHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEE
Q 014919 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHC----RDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 306 (416)
Q Consensus 231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a----~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~ 306 (416)
+.++||+|||+|.+++.++.+. ..+++++|....+ .++++.++++|++++++|+.+.+.. ...++|.|+++
T Consensus 54 ~~~vLDl~~GsG~l~l~~lsr~-a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~----~~~~fDlV~~D 128 (199)
T PRK10909 54 DARCLDCFAGSGALGLEALSRY-AAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQ----PGTPHNVVFVD 128 (199)
T ss_pred CCEEEEcCCCccHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhh----cCCCceEEEEC
Confidence 5789999999999999755554 3689999975544 4455556788999999999876421 24579999886
Q ss_pred CCCCCCCCcchhhhhhhHHHHHHHHh--hccCCcEEEEEeCc
Q 014919 307 CPNPDFNRPEHRWRMVQRSLVEAVSD--LLVHDGKVFLQSDI 346 (416)
Q Consensus 307 fpdpw~k~~h~krRl~~~~~l~~i~r--~LkpgG~l~l~tD~ 346 (416)
.|+.+. ..+..++.+.+ +|+|++.+++.+..
T Consensus 129 --PPy~~g-------~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 129 --PPFRKG-------LLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred --CCCCCC-------hHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 343221 12355555554 48999999997643
No 139
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.72 E-value=1.5e-07 Score=88.11 Aligned_cols=99 Identities=21% Similarity=0.259 Sum_probs=81.5
Q ss_pred CCCeEEEEeccccHHHHHHHHhCC-CCeEEEEch----HHHHHHHHHHhCCCc-EEEEE-cChhhhhhhhhccCCCceeE
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLEL----VTHCRDSLQLSGITN-GYFIA-TNATSTFRSIVASYPGKLIL 302 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p-~~~~iGvD~----~~~a~~~a~~~~l~n-v~f~~-~Da~~l~~~~~~~~~~s~D~ 302 (416)
...++||||.+.|.+++.||...| +.+++.+|. ...|+++.++.|+.+ +.++. +|+.+.+.. + ..++||+
T Consensus 59 ~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~-~--~~~~fDl 135 (219)
T COG4122 59 GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSR-L--LDGSFDL 135 (219)
T ss_pred CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHh-c--cCCCccE
Confidence 468999999999999999999998 889999996 456777777888876 88888 599888654 2 4789999
Q ss_pred EEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEE
Q 014919 303 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 342 (416)
Q Consensus 303 v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l 342 (416)
||+- .+ +. -++.+++.+.+.|+|||.+++
T Consensus 136 iFID---ad--K~------~yp~~le~~~~lLr~GGliv~ 164 (219)
T COG4122 136 VFID---AD--KA------DYPEYLERALPLLRPGGLIVA 164 (219)
T ss_pred EEEe---CC--hh------hCHHHHHHHHHHhCCCcEEEE
Confidence 9884 43 11 246999999999999999887
No 140
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.72 E-value=6.1e-08 Score=94.98 Aligned_cols=116 Identities=20% Similarity=0.310 Sum_probs=79.7
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEch----HHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL----VTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 305 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~----~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~ 305 (416)
.+.+|||+|||+|.+++..++.. ..+++|+|+ +..|+++++.+++.+ ++......+. ..+.||.|+.
T Consensus 161 ~g~~vLDvG~GSGILaiaA~klG-A~~v~a~DiDp~Av~~a~~N~~~N~~~~-~~~v~~~~~~-------~~~~~dlvvA 231 (295)
T PF06325_consen 161 PGKRVLDVGCGSGILAIAAAKLG-AKKVVAIDIDPLAVEAARENAELNGVED-RIEVSLSEDL-------VEGKFDLVVA 231 (295)
T ss_dssp TTSEEEEES-TTSHHHHHHHHTT-BSEEEEEESSCHHHHHHHHHHHHTT-TT-CEEESCTSCT-------CCS-EEEEEE
T ss_pred CCCEEEEeCCcHHHHHHHHHHcC-CCeEEEecCCHHHHHHHHHHHHHcCCCe-eEEEEEeccc-------ccccCCEEEE
Confidence 36899999999999999888764 458999996 566777777888775 3322222222 2588999999
Q ss_pred ECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCCcee
Q 014919 306 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLV 366 (416)
Q Consensus 306 ~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~~~~ 366 (416)
|--- -+...++..+.+.|+|||.|+++---....+.+.+.+++ ++....
T Consensus 232 NI~~-----------~vL~~l~~~~~~~l~~~G~lIlSGIl~~~~~~v~~a~~~-g~~~~~ 280 (295)
T PF06325_consen 232 NILA-----------DVLLELAPDIASLLKPGGYLILSGILEEQEDEVIEAYKQ-GFELVE 280 (295)
T ss_dssp ES-H-----------HHHHHHHHHCHHHEEEEEEEEEEEEEGGGHHHHHHHHHT-TEEEEE
T ss_pred CCCH-----------HHHHHHHHHHHHhhCCCCEEEEccccHHHHHHHHHHHHC-CCEEEE
Confidence 8310 012367888999999999999985444455667777766 776443
No 141
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.72 E-value=2.2e-07 Score=96.06 Aligned_cols=121 Identities=19% Similarity=0.286 Sum_probs=85.6
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHH----HHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEE
Q 014919 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTH----CRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 306 (416)
Q Consensus 231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~----a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~ 306 (416)
+..+||+|||+|.+++.+|+.. ..++|+|++.. |.++++.++++|++|+++|+.+.++.. +..++++|.|++.
T Consensus 293 ~~~vLDl~cG~G~~sl~la~~~--~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~-~~~~~~~D~vi~d 369 (431)
T TIGR00479 293 EELVVDAYCGVGTFTLPLAKQA--KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQ-PWAGQIPDVLLLD 369 (431)
T ss_pred CCEEEEcCCCcCHHHHHHHHhC--CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHH-HhcCCCCCEEEEC
Confidence 5789999999999999999874 48999997544 445555678889999999998764432 1134679999874
Q ss_pred CCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCCcee
Q 014919 307 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLV 366 (416)
Q Consensus 307 fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~~~~ 366 (416)
|- ... ..+.+++.+.+ |+|++.+|++.+...+... ++.|.+.++....
T Consensus 370 ---PP-r~G------~~~~~l~~l~~-l~~~~ivyvsc~p~tlard-~~~l~~~gy~~~~ 417 (431)
T TIGR00479 370 ---PP-RKG------CAAEVLRTIIE-LKPERIVYVSCNPATLARD-LEFLCKEGYGITW 417 (431)
T ss_pred ---cC-CCC------CCHHHHHHHHh-cCCCEEEEEcCCHHHHHHH-HHHHHHCCeeEEE
Confidence 31 111 12467776664 8999999998876555444 4556666765443
No 142
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.72 E-value=2.7e-07 Score=84.99 Aligned_cols=153 Identities=11% Similarity=0.063 Sum_probs=92.8
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCCC
Q 014919 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNP 310 (416)
Q Consensus 231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdp 310 (416)
+..|||||||+|.++..+++. ...+++|+|++..+++.+.. .+++++++|+.+.++ ++++++||.|+++.+-.
T Consensus 14 ~~~iLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~i~~a~~---~~~~~~~~d~~~~l~---~~~~~sfD~Vi~~~~l~ 86 (194)
T TIGR02081 14 GSRVLDLGCGDGELLALLRDE-KQVRGYGIEIDQDGVLACVA---RGVNVIQGDLDEGLE---AFPDKSFDYVILSQTLQ 86 (194)
T ss_pred CCEEEEeCCCCCHHHHHHHhc-cCCcEEEEeCCHHHHHHHHH---cCCeEEEEEhhhccc---ccCCCCcCEEEEhhHhH
Confidence 578999999999999999876 45688999998887777654 357889999875321 12467899999885433
Q ss_pred CCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCCceeeeccccccccCCCCCCCCC--CCC
Q 014919 311 DFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGEN--SFG 388 (416)
Q Consensus 311 w~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~--~~~ 388 (416)
|..+ ...+++++.|.++ ..++...+..+.......+. .+... .... + ...|.... .+.
T Consensus 87 ~~~d--------~~~~l~e~~r~~~---~~ii~~p~~~~~~~~~~~~~-~~~~~--~~~~-~-----~~~~~~~~~~~~~ 146 (194)
T TIGR02081 87 ATRN--------PEEILDEMLRVGR---HAIVSFPNFGYWRVRWSILT-KGRMP--VTGE-L-----PYDWYNTPNIHFC 146 (194)
T ss_pred cCcC--------HHHHHHHHHHhCC---eEEEEcCChhHHHHHHHHHh-CCccc--cCCC-C-----CccccCCCCcccC
Confidence 3222 1367788777655 44454444444332222222 11110 0000 0 00122111 233
Q ss_pred CCCHHHHHHHHCCCCeEEEEEE
Q 014919 389 VRSDWEQHVIDRGAPMYRLMLS 410 (416)
Q Consensus 389 ~~T~~E~k~~~~G~~i~~~~~~ 410 (416)
...++.+...+.|..+-...+.
T Consensus 147 s~~~~~~ll~~~Gf~v~~~~~~ 168 (194)
T TIGR02081 147 TIADFEDLCGELNLRILDRAAF 168 (194)
T ss_pred cHHHHHHHHHHCCCEEEEEEEe
Confidence 3456788889999988776665
No 143
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.72 E-value=1.5e-07 Score=102.98 Aligned_cols=129 Identities=11% Similarity=0.180 Sum_probs=90.7
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHH----HHHHhCCC--cEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRD----SLQLSGIT--NGYFIATNATSTFRSIVASYPGKLILVS 304 (416)
Q Consensus 231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~----~a~~~~l~--nv~f~~~Da~~l~~~~~~~~~~s~D~v~ 304 (416)
+.+|||+|||+|.+++.+|+. ....+++||++..|++ +++.++++ +++|+++|+.+++.. ..++||.|+
T Consensus 539 g~rVLDlf~gtG~~sl~aa~~-Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~----~~~~fDlIi 613 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHAALG-GAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKE----AREQFDLIF 613 (702)
T ss_pred CCeEEEcCCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHH----cCCCcCEEE
Confidence 679999999999999999986 3457999998665554 44456765 799999999886532 146899999
Q ss_pred EECCCCCCCCcc---hhh--hhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCCceee
Q 014919 305 IQCPNPDFNRPE---HRW--RMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL 367 (416)
Q Consensus 305 ~~fpdpw~k~~h---~kr--Rl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~~~~~ 367 (416)
++ .|.+.... ... .-.+.+++..+.++|+|||.+++.+....+ ....+.+.+.++....+
T Consensus 614 lD--PP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~~-~~~~~~~~~~g~~~~~i 678 (702)
T PRK11783 614 ID--PPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRGF-KMDEEGLAKLGLKAEEI 678 (702)
T ss_pred EC--CCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCccC-ChhHHHHHhCCCeEEEE
Confidence 86 23322111 000 011357888999999999999998776543 33466777777765444
No 144
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.70 E-value=8e-08 Score=90.13 Aligned_cols=98 Identities=13% Similarity=0.120 Sum_probs=69.9
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHH----HhCC-CcEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ----LSGI-TNGYFIATNATSTFRSIVASYPGKLILVS 304 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~----~~~l-~nv~f~~~Da~~l~~~~~~~~~~s~D~v~ 304 (416)
...++||||||+|.++..+++. ...++|+|++..++..++ ..+. .|+.|.++|+.++ +++||.|+
T Consensus 55 ~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~--------~~~fD~ii 124 (219)
T TIGR02021 55 KGKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSL--------CGEFDIVV 124 (219)
T ss_pred CCCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhC--------CCCcCEEE
Confidence 3688999999999999999986 458999998666554443 3343 4799999998765 26899997
Q ss_pred EECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919 305 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 343 (416)
Q Consensus 305 ~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~ 343 (416)
+.+.-.++... ....+++++.+++++++.+.+.
T Consensus 125 ~~~~l~~~~~~------~~~~~l~~i~~~~~~~~~i~~~ 157 (219)
T TIGR02021 125 CMDVLIHYPAS------DMAKALGHLASLTKERVIFTFA 157 (219)
T ss_pred EhhHHHhCCHH------HHHHHHHHHHHHhCCCEEEEEC
Confidence 65322111111 1136789999999987777663
No 145
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.69 E-value=2.5e-07 Score=91.86 Aligned_cols=115 Identities=18% Similarity=0.202 Sum_probs=81.0
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHH----HHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEE
Q 014919 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHC----RDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 306 (416)
Q Consensus 231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a----~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~ 306 (416)
+.+|||+|||+|.+++.+|+. ..+++|+|++..+ .++++.++++|++|+++|+.++... ..+.+|.|+++
T Consensus 174 ~~~VLDl~cG~G~~sl~la~~--~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~----~~~~~D~Vv~d 247 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHCATP--GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATA----QGEVPDLVLVN 247 (315)
T ss_pred CCEEEEccCCCCHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHh----cCCCCeEEEEC
Confidence 578999999999999999985 5799999975544 4455567888999999999886321 23579999886
Q ss_pred CCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCCce
Q 014919 307 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKL 365 (416)
Q Consensus 307 fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~~~ 365 (416)
.|. .. ..+..++.+ ..++|++.+|++++...+.+.+.. + .++...
T Consensus 248 --PPr--~G------~~~~~~~~l-~~~~~~~ivyvsc~p~t~~rd~~~-l--~~y~~~ 292 (315)
T PRK03522 248 --PPR--RG------IGKELCDYL-SQMAPRFILYSSCNAQTMAKDLAH-L--PGYRIE 292 (315)
T ss_pred --CCC--CC------ccHHHHHHH-HHcCCCeEEEEECCcccchhHHhh-c--cCcEEE
Confidence 221 11 112333333 447899999999888777766544 4 355543
No 146
>PLN02476 O-methyltransferase
Probab=98.69 E-value=2.3e-07 Score=90.03 Aligned_cols=102 Identities=13% Similarity=0.170 Sum_probs=79.0
Q ss_pred CCCeEEEEeccccHHHHHHHHhCC-CCeEEEEchH----HHHHHHHHHhCCC-cEEEEEcChhhhhhhhhcc-CCCceeE
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLELV----THCRDSLQLSGIT-NGYFIATNATSTFRSIVAS-YPGKLIL 302 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p-~~~~iGvD~~----~~a~~~a~~~~l~-nv~f~~~Da~~l~~~~~~~-~~~s~D~ 302 (416)
...+||||||++|.+++.+|+..| +..++.+|.. ..|++.+++.|+. +++++.+|+.+.++..... ..++||.
T Consensus 118 ~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~ 197 (278)
T PLN02476 118 GAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDF 197 (278)
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCE
Confidence 368999999999999999998765 6689999964 4455666677886 7999999999887543210 1368999
Q ss_pred EEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEE
Q 014919 303 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 342 (416)
Q Consensus 303 v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l 342 (416)
||+ |++ | + -++.+++.+.+.|+|||.+.+
T Consensus 198 VFI---Da~-K-~------~Y~~y~e~~l~lL~~GGvIV~ 226 (278)
T PLN02476 198 AFV---DAD-K-R------MYQDYFELLLQLVRVGGVIVM 226 (278)
T ss_pred EEE---CCC-H-H------HHHHHHHHHHHhcCCCcEEEE
Confidence 977 554 1 1 135889999999999999887
No 147
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=98.66 E-value=2.3e-07 Score=90.10 Aligned_cols=98 Identities=16% Similarity=0.211 Sum_probs=66.3
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHH------HHHHHHHHhCCCc-EEEEEcChhhhhhhhhccCCCceeE
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVT------HCRDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLIL 302 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~------~a~~~a~~~~l~n-v~f~~~Da~~l~~~~~~~~~~s~D~ 302 (416)
.+.+|||||||+|.++..|+.+.| ..++|+|-+. .++++. .+.++ +.++-..++++ |. .+.||.
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~GA-~~ViGiDP~~lf~~QF~~i~~~--lg~~~~~~~lplgvE~L-----p~-~~~FDt 185 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGRGA-KSVIGIDPSPLFYLQFEAIKHF--LGQDPPVFELPLGVEDL-----PN-LGAFDT 185 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhcCC-CEEEEECCChHHHHHHHHHHHH--hCCCccEEEcCcchhhc-----cc-cCCcCE
Confidence 578999999999999999999865 4799999422 222222 23333 44443445554 32 578999
Q ss_pred EEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919 303 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 344 (416)
Q Consensus 303 v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t 344 (416)
|++.-.- +| .+++ -..|.+++..|+|||.+++.|
T Consensus 186 VF~MGVL-YH-rr~P------l~~L~~Lk~~L~~gGeLvLET 219 (315)
T PF08003_consen 186 VFSMGVL-YH-RRSP------LDHLKQLKDSLRPGGELVLET 219 (315)
T ss_pred EEEeeeh-hc-cCCH------HHHHHHHHHhhCCCCEEEEEE
Confidence 9865321 11 1111 278999999999999999876
No 148
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.66 E-value=4.8e-07 Score=91.90 Aligned_cols=117 Identities=18% Similarity=0.190 Sum_probs=84.8
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHH----HHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEE
Q 014919 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCR----DSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 306 (416)
Q Consensus 231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~----~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~ 306 (416)
..++||+|||+|.+++.+|.. ..+++|+|++..|. ++++.++++|++|+++|+.+++.. ...++|.|+++
T Consensus 234 ~~~vLDL~cG~G~~~l~la~~--~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~----~~~~~D~vi~D 307 (374)
T TIGR02085 234 VTQMWDLFCGVGGFGLHCAGP--DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATA----QMSAPELVLVN 307 (374)
T ss_pred CCEEEEccCCccHHHHHHhhc--CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHh----cCCCCCEEEEC
Confidence 468999999999999999965 46899999755544 455566788999999999876421 12458998885
Q ss_pred CCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCCceee
Q 014919 307 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL 367 (416)
Q Consensus 307 fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~~~~~ 367 (416)
.|. . . ..+.+++.+. .++|++.+|++.+...+.+.+... .++....+
T Consensus 308 --PPr-~-G------~~~~~l~~l~-~~~p~~ivyvsc~p~TlaRDl~~L---~gy~l~~~ 354 (374)
T TIGR02085 308 --PPR-R-G------IGKELCDYLS-QMAPKFILYSSCNAQTMAKDIAEL---SGYQIERV 354 (374)
T ss_pred --CCC-C-C------CcHHHHHHHH-hcCCCeEEEEEeCHHHHHHHHHHh---cCceEEEE
Confidence 232 1 1 2246666665 479999999999888887776654 56665444
No 149
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.64 E-value=2.6e-07 Score=95.48 Aligned_cols=112 Identities=13% Similarity=0.245 Sum_probs=76.2
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHH----HHHHHHHhCCC-cEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTH----CRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVS 304 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~----a~~~a~~~~l~-nv~f~~~Da~~l~~~~~~~~~~s~D~v~ 304 (416)
.+..|||+|||+|..+..+|+..++.+++|+|++.. +.+++++.|++ ++.+..+|+... .... ..++||.|+
T Consensus 238 ~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~-~~~~--~~~~fD~Vl 314 (426)
T TIGR00563 238 NEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGP-SQWA--ENEQFDRIL 314 (426)
T ss_pred CCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccc-cccc--cccccCEEE
Confidence 368999999999999999999888789999997544 44555566766 244477776543 1111 356899998
Q ss_pred EECCCC----CCCCcchhh--------hh--hhHHHHHHHHhhccCCcEEEEEe
Q 014919 305 IQCPNP----DFNRPEHRW--------RM--VQRSLVEAVSDLLVHDGKVFLQS 344 (416)
Q Consensus 305 ~~fpdp----w~k~~h~kr--------Rl--~~~~~l~~i~r~LkpgG~l~l~t 344 (416)
+.-|-. +.+.+.-++ ++ .+.++|+++.+.|||||.+..+|
T Consensus 315 lDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvyst 368 (426)
T TIGR00563 315 LDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYAT 368 (426)
T ss_pred EcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 752210 111111111 11 25689999999999999999875
No 150
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.64 E-value=3.9e-07 Score=81.77 Aligned_cols=126 Identities=16% Similarity=0.187 Sum_probs=93.6
Q ss_pred CCCeEEEEeccccHHHHHHHHh-CCCCeEEEEchHHHHHHH----HHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919 230 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLELVTHCRDS----LQLSGITNGYFIATNATSTFRSIVASYPGKLILVS 304 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~-~p~~~~iGvD~~~~a~~~----a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~ 304 (416)
+..+++|||||+|..+..|++. -|+..+.++|+...|.+- ++.++ -++..+++|...-+ .++++|.+.
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~-~~~~~V~tdl~~~l------~~~~VDvLv 115 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNR-VHIDVVRTDLLSGL------RNESVDVLV 115 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcC-CccceeehhHHhhh------ccCCccEEE
Confidence 3678999999999999999886 588999999987666543 33333 35788999987653 358999998
Q ss_pred EECCCCCCC-Ccc--------------hhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCCc
Q 014919 305 IQCPNPDFN-RPE--------------HRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGK 364 (416)
Q Consensus 305 ~~fpdpw~k-~~h--------------~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~~ 364 (416)
+|- |+-. ... .-.|-+..+++..+-..|.|.|.+|+.+-..+-.+++++.++..+|..
T Consensus 116 fNP--PYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~ei~k~l~~~g~~~ 188 (209)
T KOG3191|consen 116 FNP--PYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKPKEILKILEKKGYGV 188 (209)
T ss_pred ECC--CcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCHHHHHHHHhhcccce
Confidence 873 3211 111 111445568999999999999999998776667778888888887764
No 151
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.62 E-value=2.5e-07 Score=83.33 Aligned_cols=98 Identities=14% Similarity=0.112 Sum_probs=68.6
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHh--CCCcEEEEEcChhhhhhhhhccCCCceeEEEEEC
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS--GITNGYFIATNATSTFRSIVASYPGKLILVSIQC 307 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~--~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~f 307 (416)
.+..+||||||+|.++..++++ ..+++|+|+...+.+.++++ +.+|++++++|+.++ +..+.++|.|+.|.
T Consensus 13 ~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~-----~~~~~~~d~vi~n~ 85 (169)
T smart00650 13 PGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKF-----DLPKLQPYKVVGNL 85 (169)
T ss_pred CcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcC-----CccccCCCEEEECC
Confidence 3578999999999999999988 56899999877666655432 246899999999886 22345689998874
Q ss_pred CCCCCCCcchhhhhhhHHHHHHHHhh--ccCCcEEEEEeC
Q 014919 308 PNPDFNRPEHRWRMVQRSLVEAVSDL--LVHDGKVFLQSD 345 (416)
Q Consensus 308 pdpw~k~~h~krRl~~~~~l~~i~r~--LkpgG~l~l~tD 345 (416)
| +.. ....+..+.+. +.++|.+.++.+
T Consensus 86 P--y~~---------~~~~i~~~l~~~~~~~~~~l~~q~e 114 (169)
T smart00650 86 P--YNI---------STPILFKLLEEPPAFRDAVLMVQKE 114 (169)
T ss_pred C--ccc---------HHHHHHHHHhcCCCcceEEEEEEHH
Confidence 3 311 12333333322 458888888753
No 152
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.62 E-value=4.6e-07 Score=85.59 Aligned_cols=100 Identities=23% Similarity=0.298 Sum_probs=72.6
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHH----HhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEE
Q 014919 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ----LSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 306 (416)
Q Consensus 231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~----~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~ 306 (416)
+..|||||||+|.++..+++. ..+++|+|.+..+.+.++ ..+. ++.+..+|+..+.. ..++.||.|++.
T Consensus 49 ~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~----~~~~~fD~Ii~~ 121 (233)
T PRK05134 49 GKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHALESGL-KIDYRQTTAEELAA----EHPGQFDVVTCM 121 (233)
T ss_pred CCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHHHcCC-ceEEEecCHHHhhh----hcCCCccEEEEh
Confidence 578999999999999999886 568999997655544433 2333 68888888877621 135789999876
Q ss_pred CCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeC
Q 014919 307 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD 345 (416)
Q Consensus 307 fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD 345 (416)
+.-.+... ...+++.+.+.|+|||.+++.+.
T Consensus 122 ~~l~~~~~--------~~~~l~~~~~~L~~gG~l~v~~~ 152 (233)
T PRK05134 122 EMLEHVPD--------PASFVRACAKLVKPGGLVFFSTL 152 (233)
T ss_pred hHhhccCC--------HHHHHHHHHHHcCCCcEEEEEec
Confidence 43222111 13789999999999999998753
No 153
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.61 E-value=3.5e-08 Score=92.23 Aligned_cols=99 Identities=17% Similarity=0.198 Sum_probs=67.1
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhcc--CCCceeEEEEECC
Q 014919 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVAS--YPGKLILVSIQCP 308 (416)
Q Consensus 231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~--~~~s~D~v~~~fp 308 (416)
....+|+|||+|..++.+|..+. +++|+|+++.+++.++++ +|++..+.-..-.-++.+++ .++|+|+|.+--.
T Consensus 34 h~~a~DvG~G~Gqa~~~iae~~k--~VIatD~s~~mL~~a~k~--~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa 109 (261)
T KOG3010|consen 34 HRLAWDVGTGNGQAARGIAEHYK--EVIATDVSEAMLKVAKKH--PPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQA 109 (261)
T ss_pred cceEEEeccCCCcchHHHHHhhh--hheeecCCHHHHHHhhcC--CCcccccCCccccccccccccCCCcceeeehhhhh
Confidence 34999999999988888888754 799999999888876543 23333222211100112222 3789999976545
Q ss_pred CCCCCCcchhhhhhhHHHHHHHHhhccCCc-EEEE
Q 014919 309 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDG-KVFL 342 (416)
Q Consensus 309 dpw~k~~h~krRl~~~~~l~~i~r~LkpgG-~l~l 342 (416)
-.|+. .++|.++++|+||++| .+.+
T Consensus 110 ~HWFd---------le~fy~~~~rvLRk~Gg~iav 135 (261)
T KOG3010|consen 110 VHWFD---------LERFYKEAYRVLRKDGGLIAV 135 (261)
T ss_pred HHhhc---------hHHHHHHHHHHcCCCCCEEEE
Confidence 56753 2589999999999877 5444
No 154
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.61 E-value=1.3e-07 Score=89.08 Aligned_cols=102 Identities=10% Similarity=0.068 Sum_probs=74.1
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHH-hC---------------CCcEEEEEcChhhhhhhhh
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL-SG---------------ITNGYFIATNATSTFRSIV 293 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~-~~---------------l~nv~f~~~Da~~l~~~~~ 293 (416)
.+.+||..|||.|.-+..||++ +.+|+|+|+++.|++.+.+ ++ -.+++++++|+.++ +. .
T Consensus 43 ~~~rvLvPgCGkg~D~~~LA~~--G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l-~~-~ 118 (226)
T PRK13256 43 DSSVCLIPMCGCSIDMLFFLSK--GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNL-PK-I 118 (226)
T ss_pred CCCeEEEeCCCChHHHHHHHhC--CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCC-Cc-c
Confidence 3579999999999999999998 7789999999999887633 21 23799999999887 20 0
Q ss_pred ccCCCceeEEEEE---CCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919 294 ASYPGKLILVSIQ---CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 344 (416)
Q Consensus 294 ~~~~~s~D~v~~~---fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t 344 (416)
+...+.||.|+-. +.-| ... ..++.+.+.++|+|||.+++.+
T Consensus 119 ~~~~~~fD~VyDra~~~Alp------p~~---R~~Y~~~l~~lL~pgg~llll~ 163 (226)
T PRK13256 119 ANNLPVFDIWYDRGAYIALP------NDL---RTNYAKMMLEVCSNNTQILLLV 163 (226)
T ss_pred ccccCCcCeeeeehhHhcCC------HHH---HHHHHHHHHHHhCCCcEEEEEE
Confidence 0012578887522 1111 111 2488999999999999887754
No 155
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.57 E-value=1e-06 Score=79.87 Aligned_cols=114 Identities=16% Similarity=0.213 Sum_probs=77.2
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHH----HHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTH----CRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 305 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~----a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~ 305 (416)
++..|+|+|||||.+++..+-..| ..++|+|+... +.+++.+ ...+|.|+.+|+.++ .+.+|.+.+
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa-~~V~~vdiD~~a~ei~r~N~~~-l~g~v~f~~~dv~~~--------~~~~dtvim 114 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGA-SRVLAVDIDPEALEIARANAEE-LLGDVEFVVADVSDF--------RGKFDTVIM 114 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCC-cEEEEEecCHHHHHHHHHHHHh-hCCceEEEEcchhhc--------CCccceEEE
Confidence 577899999999999998887654 68999997444 4444444 556899999999886 567888888
Q ss_pred ECCCCCCC-CcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCCc
Q 014919 306 QCPNPDFN-RPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGK 364 (416)
Q Consensus 306 ~fpdpw~k-~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~~ 364 (416)
| .||=. .+| -+..||....+.- .+.-+.-+..+.+++....+..|...
T Consensus 115 N--PPFG~~~rh-----aDr~Fl~~Ale~s----~vVYsiH~a~~~~f~~~~~~~~G~~v 163 (198)
T COG2263 115 N--PPFGSQRRH-----ADRPFLLKALEIS----DVVYSIHKAGSRDFVEKFAADLGGTV 163 (198)
T ss_pred C--CCCcccccc-----CCHHHHHHHHHhh----heEEEeeccccHHHHHHHHHhcCCeE
Confidence 8 56632 233 2346666555542 22333333445566777778887653
No 156
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.57 E-value=4.2e-07 Score=85.44 Aligned_cols=96 Identities=14% Similarity=0.160 Sum_probs=63.7
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHH----HHhCC-CcEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL----QLSGI-TNGYFIATNATSTFRSIVASYPGKLILVS 304 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a----~~~~l-~nv~f~~~Da~~l~~~~~~~~~~s~D~v~ 304 (416)
....|||||||+|.++..+++.. ..++|+|++..+++.+ ...+. .++.|..+|... .+++||.|+
T Consensus 63 ~~~~vLDvGcG~G~~~~~l~~~~--~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~--------~~~~fD~v~ 132 (230)
T PRK07580 63 TGLRILDAGCGVGSLSIPLARRG--AKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES--------LLGRFDTVV 132 (230)
T ss_pred CCCEEEEEeCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh--------ccCCcCEEE
Confidence 35789999999999999999874 4699999765554443 33444 479999999432 257899998
Q ss_pred EECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEE
Q 014919 305 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVF 341 (416)
Q Consensus 305 ~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~ 341 (416)
++..-.++.... ....++.+.+.+++++.+.
T Consensus 133 ~~~~l~~~~~~~------~~~~l~~l~~~~~~~~~i~ 163 (230)
T PRK07580 133 CLDVLIHYPQED------AARMLAHLASLTRGSLIFT 163 (230)
T ss_pred EcchhhcCCHHH------HHHHHHHHHhhcCCeEEEE
Confidence 753321111111 1366777887765544443
No 157
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.56 E-value=1.2e-06 Score=86.79 Aligned_cols=67 Identities=19% Similarity=0.144 Sum_probs=50.9
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHH----h-----CCCcEEEEEcChhhhhhhhhccCCCce
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL----S-----GITNGYFIATNATSTFRSIVASYPGKL 300 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~----~-----~l~nv~f~~~Da~~l~~~~~~~~~~s~ 300 (416)
.+.+|||||||+|.++..+++. +.+++|+|++..+++.+++ . +..++.|.+.|+.++ +++|
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l--------~~~f 213 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL--------SGKY 213 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc--------CCCc
Confidence 3579999999999999999986 5799999987666554432 2 124688999887543 4689
Q ss_pred eEEEEE
Q 014919 301 ILVSIQ 306 (416)
Q Consensus 301 D~v~~~ 306 (416)
|.|++.
T Consensus 214 D~Vv~~ 219 (315)
T PLN02585 214 DTVTCL 219 (315)
T ss_pred CEEEEc
Confidence 988755
No 158
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.55 E-value=9.3e-07 Score=84.61 Aligned_cols=102 Identities=18% Similarity=0.220 Sum_probs=78.9
Q ss_pred CCCeEEEEeccccHHHHHHHHhC-CCCeEEEEch----HHHHHHHHHHhCC-CcEEEEEcChhhhhhhhhcc--CCCcee
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLEL----VTHCRDSLQLSGI-TNGYFIATNATSTFRSIVAS--YPGKLI 301 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~-p~~~~iGvD~----~~~a~~~a~~~~l-~nv~f~~~Da~~l~~~~~~~--~~~s~D 301 (416)
+..++||||+++|..++.||+.. |+.+++.+|. ...|++..++.|+ .+|+++.+|+.+.++...+. ..++||
T Consensus 79 ~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD 158 (247)
T PLN02589 79 NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFD 158 (247)
T ss_pred CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCccc
Confidence 36899999999999999999876 4789999996 3445666667776 47999999999987654321 136899
Q ss_pred EEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEE
Q 014919 302 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 342 (416)
Q Consensus 302 ~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l 342 (416)
.||+ |.+ |+ -++.+++.+.+.|+|||.+++
T Consensus 159 ~iFi---Dad------K~--~Y~~y~~~~l~ll~~GGviv~ 188 (247)
T PLN02589 159 FIFV---DAD------KD--NYINYHKRLIDLVKVGGVIGY 188 (247)
T ss_pred EEEe---cCC------HH--HhHHHHHHHHHhcCCCeEEEE
Confidence 9987 444 11 135889999999999999886
No 159
>PLN02823 spermine synthase
Probab=98.54 E-value=1.7e-06 Score=86.48 Aligned_cols=125 Identities=15% Similarity=0.136 Sum_probs=90.9
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHh--------CCCcEEEEEcChhhhhhhhhccCCCcee
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS--------GITNGYFIATNATSTFRSIVASYPGKLI 301 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~--------~l~nv~f~~~Da~~l~~~~~~~~~~s~D 301 (416)
+...||.||+|.|..+..+.+..+..+++.||+.....+.+++. .-++++++.+|+...+.. .++++|
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~----~~~~yD 178 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEK----RDEKFD 178 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhh----CCCCcc
Confidence 46789999999999999888876677899999765555444321 125799999999988642 357899
Q ss_pred EEEEECCCCCCCCcchhhhhhhHHHHH-HHHhhccCCcEEEEEeC------cHHHHHHHHHHHHhC
Q 014919 302 LVSIQCPNPDFNRPEHRWRMVQRSLVE-AVSDLLVHDGKVFLQSD------IEEVMLRMKQQFLEY 360 (416)
Q Consensus 302 ~v~~~fpdpw~k~~h~krRl~~~~~l~-~i~r~LkpgG~l~l~tD------~~~~~~~~~~~~~~~ 360 (416)
+|++-.+||+.... -.++...+|++ .+.+.|+|||.+.+..- ..+.+..+.+.+.+.
T Consensus 179 vIi~D~~dp~~~~~--~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~s~~~~~~~~~~~~i~~tl~~v 242 (336)
T PLN02823 179 VIIGDLADPVEGGP--CYQLYTKSFYERIVKPKLNPGGIFVTQAGPAGILTHKEVFSSIYNTLRQV 242 (336)
T ss_pred EEEecCCCccccCc--chhhccHHHHHHHHHHhcCCCcEEEEeccCcchhccHHHHHHHHHHHHHh
Confidence 99998888863211 12366779998 89999999999987632 233445555566554
No 160
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.52 E-value=3.2e-06 Score=83.85 Aligned_cols=130 Identities=13% Similarity=0.143 Sum_probs=82.7
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHH----HHHHHHh-CCC-cEEEEE-cChhhhhhhhhccCCCceeE
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHC----RDSLQLS-GIT-NGYFIA-TNATSTFRSIVASYPGKLIL 302 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a----~~~a~~~-~l~-nv~f~~-~Da~~l~~~~~~~~~~s~D~ 302 (416)
...++||||||+|.....|+.+.++++++|+|+...| .++++.+ ++. ++++.+ .|...++.... ...+.||.
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~-~~~~~fDl 192 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGII-HKNERFDA 192 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhccc-ccCCceEE
Confidence 3578999999999999999998899999999985544 4455556 565 577754 45554432211 13568999
Q ss_pred EEEECCCCCCCCcch-------hhhhhh--------HHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCCce
Q 014919 303 VSIQCPNPDFNRPEH-------RWRMVQ--------RSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKL 365 (416)
Q Consensus 303 v~~~fpdpw~k~~h~-------krRl~~--------~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~~~ 365 (416)
|++| .|++..... |.|-.. ..|=....+.+.+||.+.|.. .+.++..+...+.+|+..
T Consensus 193 ivcN--PPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~---~mi~eS~~~~~~~gwfts 265 (321)
T PRK11727 193 TLCN--PPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIK---RMIEESKAFAKQVLWFTS 265 (321)
T ss_pred EEeC--CCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeeh---HhhHHHHHHHhhCcEEEE
Confidence 9998 666643221 111000 001112456677999988764 355556667777777643
No 161
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.50 E-value=1.3e-06 Score=83.06 Aligned_cols=125 Identities=12% Similarity=0.114 Sum_probs=81.4
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHH----HHHHhCCCc-EEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRD----SLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVSI 305 (416)
Q Consensus 231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~----~a~~~~l~n-v~f~~~Da~~l~~~~~~~~~~s~D~v~~ 305 (416)
...+||+|||+|..++.++...|++.++++|.+..|++ ++++.++.+ +..++-+.+.-...-.+...+.+|.+..
T Consensus 149 ~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllvs 228 (328)
T KOG2904|consen 149 HTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLVS 228 (328)
T ss_pred cceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEec
Confidence 46899999999999999999999999999998776655 445556654 6665443332110001224588999988
Q ss_pred ECCCCCCCCcch------------hhhh--------hhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHH
Q 014919 306 QCPNPDFNRPEH------------RWRM--------VQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQF 357 (416)
Q Consensus 306 ~fpdpw~k~~h~------------krRl--------~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~ 357 (416)
| .|+.+.... |..+ ..-.++.-..|.|+|||.+.+.++...-...+...+
T Consensus 229 N--PPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~~~~~~~lv~~~ 298 (328)
T KOG2904|consen 229 N--PPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVERKEHSYLVRIW 298 (328)
T ss_pred C--CCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEecccccCcHHHHHH
Confidence 8 555433211 1011 112567778999999999999987433333344433
No 162
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.49 E-value=5e-07 Score=90.10 Aligned_cols=115 Identities=19% Similarity=0.201 Sum_probs=72.7
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHh-----------CC---CcEEEEEcChhhh-hhhhhc
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS-----------GI---TNGYFIATNATST-FRSIVA 294 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~-----------~l---~nv~f~~~Da~~l-~~~~~~ 294 (416)
.+..|||||||.|.-+....... -..++|+|++..+++.|++. .. -...|+.+|.... +.+.++
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~-i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~ 140 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAK-IKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP 140 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred CCCeEEEecCCCchhHHHHHhcC-CCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence 46899999999999988888764 45899999754444333210 11 2467888887532 233343
Q ss_pred cCCCceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHH
Q 014919 295 SYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEV 349 (416)
Q Consensus 295 ~~~~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~ 349 (416)
.....||+|.++|.-.+.=....+ -..+|+.+.+.|+|||.|+..|.+.+.
T Consensus 141 ~~~~~FDvVScQFalHY~Fese~~----ar~~l~Nvs~~Lk~GG~FIgT~~d~~~ 191 (331)
T PF03291_consen 141 PRSRKFDVVSCQFALHYAFESEEK----ARQFLKNVSSLLKPGGYFIGTTPDSDE 191 (331)
T ss_dssp STTS-EEEEEEES-GGGGGSSHHH----HHHHHHHHHHTEEEEEEEEEEEE-HHH
T ss_pred ccCCCcceeehHHHHHHhcCCHHH----HHHHHHHHHHhcCCCCEEEEEecCHHH
Confidence 123599999999876552222222 137999999999999999998765443
No 163
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.48 E-value=2.6e-06 Score=86.24 Aligned_cols=118 Identities=14% Similarity=0.198 Sum_probs=81.2
Q ss_pred CeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHH----HHHHHhCCCcEEEEEcChhhhhhhhhccC-----------
Q 014919 232 PLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCR----DSLQLSGITNGYFIATNATSTFRSIVASY----------- 296 (416)
Q Consensus 232 ~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~----~~a~~~~l~nv~f~~~Da~~l~~~~~~~~----------- 296 (416)
..+||++||+|.+++.+|+... .++|+|++..|. +++..++++|++|+++|+.++++......
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~--~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~ 285 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFR--RVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDLK 285 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCC--EEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhccccccccccccc
Confidence 4699999999999999998753 899999755544 45555788899999999988754321000
Q ss_pred CCceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCCcee
Q 014919 297 PGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLV 366 (416)
Q Consensus 297 ~~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~~~~ 366 (416)
...+|.|++ ||-. .. ..+..++.+.+ |++.+|++.|...+.+.+.. |.+ ++....
T Consensus 286 ~~~~D~v~l---DPPR-~G------~~~~~l~~l~~---~~~ivyvSC~p~tlarDl~~-L~~-gY~l~~ 340 (362)
T PRK05031 286 SYNFSTIFV---DPPR-AG------LDDETLKLVQA---YERILYISCNPETLCENLET-LSQ-THKVER 340 (362)
T ss_pred CCCCCEEEE---CCCC-CC------CcHHHHHHHHc---cCCEEEEEeCHHHHHHHHHH-HcC-CcEEEE
Confidence 124798877 5521 11 12355555554 79999999988777776654 433 665443
No 164
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.44 E-value=1.1e-06 Score=82.24 Aligned_cols=119 Identities=14% Similarity=0.210 Sum_probs=74.4
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEchH----HHHHHHHHH-----hCCC-------------------------
Q 014919 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELV----THCRDSLQL-----SGIT------------------------- 276 (416)
Q Consensus 231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~----~~a~~~a~~-----~~l~------------------------- 276 (416)
...+|||||-+|..++.+|+.+-...++|+|+. ..|++.++. ....
T Consensus 59 ~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~t 138 (288)
T KOG2899|consen 59 PKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAFT 138 (288)
T ss_pred cceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccccccc
Confidence 578999999999999999999988899999974 444443220 0011
Q ss_pred -----cEEEEEcChhhhhhhhhccCCCceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe-CcHHHH
Q 014919 277 -----NGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS-DIEEVM 350 (416)
Q Consensus 277 -----nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t-D~~~~~ 350 (416)
|+.|...+..-.-++++......||.|++.-..-|..-.|+-.-+ ..|++.+++.|.|||+|++.- .|..|-
T Consensus 139 ~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL--~~ff~kis~ll~pgGiLvvEPQpWksY~ 216 (288)
T KOG2899|consen 139 TDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGL--RRFFRKISSLLHPGGILVVEPQPWKSYK 216 (288)
T ss_pred ccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHH--HHHHHHHHHhhCcCcEEEEcCCchHHHH
Confidence 333333322111011111134678988665445554333332222 389999999999999999973 466664
Q ss_pred H
Q 014919 351 L 351 (416)
Q Consensus 351 ~ 351 (416)
.
T Consensus 217 k 217 (288)
T KOG2899|consen 217 K 217 (288)
T ss_pred H
Confidence 3
No 165
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.41 E-value=4.3e-06 Score=76.96 Aligned_cols=105 Identities=13% Similarity=0.114 Sum_probs=70.1
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHH----HHHHHhCCC-cEEEEEcChhhhhhhhhccCCCc-eeEE
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCR----DSLQLSGIT-NGYFIATNATSTFRSIVASYPGK-LILV 303 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~----~~a~~~~l~-nv~f~~~Da~~l~~~~~~~~~~s-~D~v 303 (416)
.+.++||++||+|.++++++.+.. ..++++|....|. ++++.+++. +++++++|+...+.... ...+ +|.|
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga-~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~--~~~~~~dvv 125 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGA-KVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLA--KKPTFDNVI 125 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhh--ccCCCceEE
Confidence 367899999999999999999864 4899999755443 445556665 69999999977644221 1233 5665
Q ss_pred EEECCCCCCCCcchhhhhhhHHHHHHHH--hhccCCcEEEEEeCc
Q 014919 304 SIQCPNPDFNRPEHRWRMVQRSLVEAVS--DLLVHDGKVFLQSDI 346 (416)
Q Consensus 304 ~~~fpdpw~k~~h~krRl~~~~~l~~i~--r~LkpgG~l~l~tD~ 346 (416)
++ ||.+... . .+..++.+. .+|+++|.+++.++.
T Consensus 126 ~~---DPPy~~~-----~-~~~~l~~l~~~~~l~~~~iiv~E~~~ 161 (189)
T TIGR00095 126 YL---DPPFFNG-----A-LQALLELCENNWILEDTVLIVVEEDR 161 (189)
T ss_pred EE---CcCCCCC-----c-HHHHHHHHHHCCCCCCCeEEEEEecC
Confidence 44 5544321 1 134444443 478999999887643
No 166
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.41 E-value=1.8e-06 Score=83.91 Aligned_cols=123 Identities=17% Similarity=0.172 Sum_probs=82.3
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchH----HHHHHHHHH-hCC-----CcEEEEEcChhhh-hhhhhccCCC
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELV----THCRDSLQL-SGI-----TNGYFIATNATST-FRSIVASYPG 298 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~----~~a~~~a~~-~~l-----~nv~f~~~Da~~l-~~~~~~~~~~ 298 (416)
....++|+|||.|.-++..-++. -..++|+|+. ..|+++.+. .+. -.+.|+.+|...- +.+.+++.+.
T Consensus 117 ~~~~~~~LgCGKGGDLlKw~kAg-I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp 195 (389)
T KOG1975|consen 117 RGDDVLDLGCGKGGDLLKWDKAG-IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDP 195 (389)
T ss_pred cccccceeccCCcccHhHhhhhc-ccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCC
Confidence 46789999999999988877653 3489999973 455554332 111 1378999987542 2344443455
Q ss_pred ceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHH
Q 014919 299 KLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQF 357 (416)
Q Consensus 299 s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~ 357 (416)
+||+|.++|.-.+.-....+-| .+|..+.++|+|||.|+-.+.+.+..-+-++..
T Consensus 196 ~fDivScQF~~HYaFetee~ar----~~l~Nva~~LkpGG~FIgTiPdsd~Ii~rlr~~ 250 (389)
T KOG1975|consen 196 RFDIVSCQFAFHYAFETEESAR----IALRNVAKCLKPGGVFIGTIPDSDVIIKRLRAG 250 (389)
T ss_pred CcceeeeeeeEeeeeccHHHHH----HHHHHHHhhcCCCcEEEEecCcHHHHHHHHHhc
Confidence 5999988886554222223322 678999999999999998877666554444444
No 167
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.41 E-value=5e-06 Score=83.90 Aligned_cols=111 Identities=14% Similarity=0.198 Sum_probs=78.2
Q ss_pred CeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHH----HHHHHHhCCCcEEEEEcChhhhhhhhhc---c---C-----
Q 014919 232 PLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHC----RDSLQLSGITNGYFIATNATSTFRSIVA---S---Y----- 296 (416)
Q Consensus 232 ~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a----~~~a~~~~l~nv~f~~~Da~~l~~~~~~---~---~----- 296 (416)
..+||++||+|.+++.||+... .++|+|++..| .++++.++++|++|+++|+.++++.... + .
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~~--~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 276 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNFR--RVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLK 276 (353)
T ss_pred CcEEEEeccccHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhccccccccccccc
Confidence 4699999999999999998863 89999975544 4455567888999999999887542110 0 0
Q ss_pred CCceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHH
Q 014919 297 PGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQF 357 (416)
Q Consensus 297 ~~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~ 357 (416)
...+|.|++ ||- ... ..+.+++.+.+ |++.+|+++|...+++.+....
T Consensus 277 ~~~~d~v~l---DPP-R~G------~~~~~l~~l~~---~~~ivYvsC~p~tlaRDl~~L~ 324 (353)
T TIGR02143 277 SYNCSTIFV---DPP-RAG------LDPDTCKLVQA---YERILYISCNPETLKANLEQLS 324 (353)
T ss_pred cCCCCEEEE---CCC-CCC------CcHHHHHHHHc---CCcEEEEEcCHHHHHHHHHHHh
Confidence 113688877 552 222 12355665544 8999999999888888776543
No 168
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.39 E-value=1.4e-06 Score=82.94 Aligned_cols=96 Identities=16% Similarity=0.201 Sum_probs=69.4
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCC
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN 309 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpd 309 (416)
....+||||+|.|.++..+++++|+.+++.+|+ ...++.+++ .++++++.+|..+- + +. .|++++...-
T Consensus 100 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~--~~rv~~~~gd~f~~----~---P~-~D~~~l~~vL 168 (241)
T PF00891_consen 100 GFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE--ADRVEFVPGDFFDP----L---PV-ADVYLLRHVL 168 (241)
T ss_dssp TSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH--TTTEEEEES-TTTC----C---SS-ESEEEEESSG
T ss_pred CccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc--ccccccccccHHhh----h---cc-ccceeeehhh
Confidence 457899999999999999999999999999996 222333333 67899999998632 2 33 9998876332
Q ss_pred -CCCCCcchhhhhhhHHHHHHHHhhccCC--cEEEEE
Q 014919 310 -PDFNRPEHRWRMVQRSLVEAVSDLLVHD--GKVFLQ 343 (416)
Q Consensus 310 -pw~k~~h~krRl~~~~~l~~i~r~Lkpg--G~l~l~ 343 (416)
.|.. . ....+|+.+++.|+|| |+|++.
T Consensus 169 h~~~d-~------~~~~iL~~~~~al~pg~~g~llI~ 198 (241)
T PF00891_consen 169 HDWSD-E------DCVKILRNAAAALKPGKDGRLLII 198 (241)
T ss_dssp GGS-H-H------HHHHHHHHHHHHSEECTTEEEEEE
T ss_pred hhcch-H------HHHHHHHHHHHHhCCCCCCeEEEE
Confidence 2321 1 1248899999999999 999885
No 169
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.39 E-value=3.3e-06 Score=77.06 Aligned_cols=111 Identities=20% Similarity=0.273 Sum_probs=76.4
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCe---------EEEEchHHH----HHHHHHHhCCC-cEEEEEcChhhhhhhhhccC
Q 014919 231 QPLVVDIGSGNGLFLLGMARKRKDLN---------FLGLELVTH----CRDSLQLSGIT-NGYFIATNATSTFRSIVASY 296 (416)
Q Consensus 231 ~~~vLDIGCG~G~~~~~lA~~~p~~~---------~iGvD~~~~----a~~~a~~~~l~-nv~f~~~Da~~l~~~~~~~~ 296 (416)
+..+||-=||+|.++++.|...++.. ++|.|+... |.++++..++. .+.+.+.|+.++ ++.
T Consensus 29 ~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l-----~~~ 103 (179)
T PF01170_consen 29 GDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDAREL-----PLP 103 (179)
T ss_dssp TS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGG-----GGT
T ss_pred CCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhc-----ccc
Confidence 67899999999999999988877766 999997544 45555566765 489999999998 224
Q ss_pred CCceeEEEEECCCCCCCCcch--hhhhhhHHHHHHHHhhccCCcEEEEEeCcHHH
Q 014919 297 PGKLILVSIQCPNPDFNRPEH--RWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEV 349 (416)
Q Consensus 297 ~~s~D~v~~~fpdpw~k~~h~--krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~ 349 (416)
++++|.|..+ .||=..... ..+.+++.+++++.++|++ ..+++.+.+..+
T Consensus 104 ~~~~d~Ivtn--PPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~~~~~~~ 155 (179)
T PF01170_consen 104 DGSVDAIVTN--PPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFLTTSNREL 155 (179)
T ss_dssp TSBSCEEEEE----STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEEEESCCCH
T ss_pred cCCCCEEEEC--cchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEEEECCHHH
Confidence 7899999998 566332111 1134467899999999999 555555655543
No 170
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.38 E-value=6.7e-07 Score=84.13 Aligned_cols=99 Identities=17% Similarity=0.219 Sum_probs=71.7
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHH-HHhC---------------CCcEEEEEcChhhhhhhhh
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL-QLSG---------------ITNGYFIATNATSTFRSIV 293 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a-~~~~---------------l~nv~f~~~Da~~l~~~~~ 293 (416)
.+.+||..|||.|.-+..||++ +.+|+|+|++..|++.+ ++++ ..+|++.++|..++-+.
T Consensus 37 ~~~rvLvPgCG~g~D~~~La~~--G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~-- 112 (218)
T PF05724_consen 37 PGGRVLVPGCGKGYDMLWLAEQ--GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPE-- 112 (218)
T ss_dssp TSEEEEETTTTTSCHHHHHHHT--TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGS--
T ss_pred CCCeEEEeCCCChHHHHHHHHC--CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChh--
Confidence 3568999999999999999997 67999999999999886 3322 13578999999887211
Q ss_pred ccCCCceeEEEEE---CCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919 294 ASYPGKLILVSIQ---CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 343 (416)
Q Consensus 294 ~~~~~s~D~v~~~---fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~ 343 (416)
..++||.|+=. +.-| ... .+++.+.++++|+|||.+++.
T Consensus 113 --~~g~fD~iyDr~~l~Alp------p~~---R~~Ya~~l~~ll~p~g~~lLi 154 (218)
T PF05724_consen 113 --DVGKFDLIYDRTFLCALP------PEM---RERYAQQLASLLKPGGRGLLI 154 (218)
T ss_dssp --CHHSEEEEEECSSTTTS-------GGG---HHHHHHHHHHCEEEEEEEEEE
T ss_pred --hcCCceEEEEecccccCC------HHH---HHHHHHHHHHHhCCCCcEEEE
Confidence 22579999632 1112 122 258999999999999995544
No 171
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.34 E-value=4.8e-06 Score=84.77 Aligned_cols=101 Identities=17% Similarity=0.232 Sum_probs=77.8
Q ss_pred CeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHH----HHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEEC
Q 014919 232 PLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCR----DSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQC 307 (416)
Q Consensus 232 ~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~----~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~f 307 (416)
.++||++||+|.+++.+|...+...++++|++..|. ++++.++++++.+.++|+..++.. ...||.|.+
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~-----~~~fD~V~l-- 131 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHE-----ERKFDVVDI-- 131 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhh-----cCCCCEEEE--
Confidence 589999999999999999887766899999865554 445567888899999999886421 356999987
Q ss_pred CCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE-eCcHHH
Q 014919 308 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ-SDIEEV 349 (416)
Q Consensus 308 pdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~-tD~~~~ 349 (416)
||. ... ..+++...+.+++||.++++ ||-..+
T Consensus 132 -DP~-Gs~--------~~~l~~al~~~~~~gilyvSAtD~~~L 164 (382)
T PRK04338 132 -DPF-GSP--------APFLDSAIRSVKRGGLLCVTATDTAPL 164 (382)
T ss_pred -CCC-CCc--------HHHHHHHHHHhcCCCEEEEEecCchhh
Confidence 453 221 37888877889999999996 565544
No 172
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.29 E-value=2.8e-06 Score=83.67 Aligned_cols=100 Identities=15% Similarity=0.186 Sum_probs=71.5
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEch---HHHHHHHHHHhCCCc-EEEEEcChhhhhhhhhccCCCceeEEEEE
Q 014919 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL---VTHCRDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVSIQ 306 (416)
Q Consensus 231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~---~~~a~~~a~~~~l~n-v~f~~~Da~~l~~~~~~~~~~s~D~v~~~ 306 (416)
..+|||+|||+|.+++--|++. ..+++|||. ...|.+.++.+++++ |+++++.+.++ .+ +.+.+|.|..-
T Consensus 61 dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi---~L--P~eKVDiIvSE 134 (346)
T KOG1499|consen 61 DKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDI---EL--PVEKVDIIVSE 134 (346)
T ss_pred CCEEEEcCCCccHHHHHHHHhC-cceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEE---ec--CccceeEEeeh
Confidence 6899999999999999888876 679999994 455666677888887 99999999987 23 35789998654
Q ss_pred CCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEE
Q 014919 307 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVF 341 (416)
Q Consensus 307 fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~ 341 (416)
+---|. -+. -+-...|-.--++|+|||.++
T Consensus 135 WMGy~L--l~E---sMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 135 WMGYFL--LYE---SMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred hhhHHH--HHh---hhhhhhhhhhhhccCCCceEc
Confidence 211110 000 011244555678999999865
No 173
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.29 E-value=3.3e-06 Score=78.68 Aligned_cols=125 Identities=10% Similarity=0.127 Sum_probs=89.8
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHh----CC--CcEEEEEcChhhhhhhhhccCCCceeEE
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS----GI--TNGYFIATNATSTFRSIVASYPGKLILV 303 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~----~l--~nv~f~~~Da~~l~~~~~~~~~~s~D~v 303 (416)
.+.+|||-+.|-|.+++..+++- ...++-+|.....++.+.-+ ++ .+++++.+|+.++.++ | .+.+||.|
T Consensus 134 ~G~rVLDtC~GLGYtAi~a~~rG-A~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~-~--~D~sfDaI 209 (287)
T COG2521 134 RGERVLDTCTGLGYTAIEALERG-AIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKD-F--DDESFDAI 209 (287)
T ss_pred cCCEeeeeccCccHHHHHHHHcC-CcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhc-C--CccccceE
Confidence 47899999999999999988872 34899999544333332211 22 2689999999998653 3 68899988
Q ss_pred EEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcH-------HHHHHHHHHHHhCCCC
Q 014919 304 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE-------EVMLRMKQQFLEYGKG 363 (416)
Q Consensus 304 ~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~-------~~~~~~~~~~~~~~~~ 363 (416)
. + || |.-.+.- ++...+|.++++|+|||||.++--+-++ +......+-+++.||.
T Consensus 210 i-H--DP-PRfS~Ag-eLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~ 271 (287)
T COG2521 210 I-H--DP-PRFSLAG-ELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFE 271 (287)
T ss_pred e-e--CC-Cccchhh-hHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHhcCce
Confidence 4 4 44 2222322 6788999999999999999988755332 3456677778888876
No 174
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.28 E-value=3e-07 Score=85.31 Aligned_cols=100 Identities=14% Similarity=0.175 Sum_probs=72.7
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCCC
Q 014919 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNP 310 (416)
Q Consensus 231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdp 310 (416)
-.++||+|||||-+...|-... .+.+|+|+|+++++++.+.++-. ++.++|+..+++. ..++.+|.|..--.-|
T Consensus 126 F~~~lDLGCGTGL~G~~lR~~a--~~ltGvDiS~nMl~kA~eKg~YD-~L~~Aea~~Fl~~---~~~er~DLi~AaDVl~ 199 (287)
T COG4976 126 FRRMLDLGCGTGLTGEALRDMA--DRLTGVDISENMLAKAHEKGLYD-TLYVAEAVLFLED---LTQERFDLIVAADVLP 199 (287)
T ss_pred cceeeecccCcCcccHhHHHHH--hhccCCchhHHHHHHHHhccchH-HHHHHHHHHHhhh---ccCCcccchhhhhHHH
Confidence 3689999999999988876653 36899999999999998877522 2345666655321 2467899987553333
Q ss_pred CCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919 311 DFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 344 (416)
Q Consensus 311 w~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t 344 (416)
+.... +.++-.....|+|||.|.|++
T Consensus 200 YlG~L--------e~~~~~aa~~L~~gGlfaFSv 225 (287)
T COG4976 200 YLGAL--------EGLFAGAAGLLAPGGLFAFSV 225 (287)
T ss_pred hhcch--------hhHHHHHHHhcCCCceEEEEe
Confidence 32221 478889999999999999975
No 175
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.26 E-value=3.6e-06 Score=78.06 Aligned_cols=95 Identities=22% Similarity=0.339 Sum_probs=68.4
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHH----HHHHHHhCCCc-EEEEEcChhhhhhhhhccCCCceeEEE
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHC----RDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVS 304 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a----~~~a~~~~l~n-v~f~~~Da~~l~~~~~~~~~~s~D~v~ 304 (416)
++..|+|+-||-|.|++.+|+..+...++++|+...| .++++.+++++ +..+++|+.+++ ..+.+|.|.
T Consensus 101 ~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~------~~~~~drvi 174 (200)
T PF02475_consen 101 PGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFL------PEGKFDRVI 174 (200)
T ss_dssp TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---------TT-EEEEE
T ss_pred cceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhc------CccccCEEE
Confidence 4789999999999999999997778899999986554 44556677765 899999998873 267899999
Q ss_pred EECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEE
Q 014919 305 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 342 (416)
Q Consensus 305 ~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l 342 (416)
++.|.. . ..||..+.+++++||.+++
T Consensus 175 m~lp~~----~--------~~fl~~~~~~~~~~g~ihy 200 (200)
T PF02475_consen 175 MNLPES----S--------LEFLDAALSLLKEGGIIHY 200 (200)
T ss_dssp E--TSS----G--------GGGHHHHHHHEEEEEEEEE
T ss_pred ECChHH----H--------HHHHHHHHHHhcCCcEEEC
Confidence 985422 1 2789999999999999874
No 176
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.21 E-value=1.5e-05 Score=76.35 Aligned_cols=123 Identities=15% Similarity=0.169 Sum_probs=89.4
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHH------h--CCCcEEEEEcChhhhhhhhhccCCC-ce
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL------S--GITNGYFIATNATSTFRSIVASYPG-KL 300 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~------~--~l~nv~f~~~Da~~l~~~~~~~~~~-s~ 300 (416)
+...||=||-|.|..+..+.+..+..+++.||+.+...+.+++ . .-++++++.+|+..++.+. .. .+
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~----~~~~y 151 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKET----QEEKY 151 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTS----SST-E
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhc----cCCcc
Confidence 5789999999999999999877667799999975544443332 1 1357999999999987542 34 89
Q ss_pred eEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeC----cHHHHHHHHHHHHhC
Q 014919 301 ILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD----IEEVMLRMKQQFLEY 360 (416)
Q Consensus 301 D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD----~~~~~~~~~~~~~~~ 360 (416)
|.|++-.+||.....+ +...+|++.+.++|+|||.+.+... ....+..+.+.+++.
T Consensus 152 DvIi~D~~dp~~~~~~----l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~~i~~tl~~~ 211 (246)
T PF01564_consen 152 DVIIVDLTDPDGPAPN----LFTREFYQLCKRRLKPDGVLVLQAGSPFLHPELFKSILKTLRSV 211 (246)
T ss_dssp EEEEEESSSTTSCGGG----GSSHHHHHHHHHHEEEEEEEEEEEEETTTTHHHHHHHHHHHHTT
T ss_pred cEEEEeCCCCCCCccc----ccCHHHHHHHHhhcCCCcEEEEEccCcccchHHHHHHHHHHHHh
Confidence 9999988887633222 6778999999999999999998742 244555566666665
No 177
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.21 E-value=2.9e-06 Score=75.85 Aligned_cols=73 Identities=10% Similarity=0.023 Sum_probs=54.3
Q ss_pred EEEchHHHHHHHHHHh-------CCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCCCCCCCcchhhhhhhHHHHHHH
Q 014919 258 LGLELVTHCRDSLQLS-------GITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAV 330 (416)
Q Consensus 258 iGvD~~~~a~~~a~~~-------~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i 330 (416)
+|+|++..+++.++++ +..|++|+++|+.++ |+++++||.|++.|.-.|..++ ..+|+++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~l-----p~~~~~fD~v~~~~~l~~~~d~--------~~~l~ei 67 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDL-----PFDDCEFDAVTMGYGLRNVVDR--------LRAMKEM 67 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhC-----CCCCCCeeEEEecchhhcCCCH--------HHHHHHH
Confidence 4899766655544321 135799999999887 4467899999988765554321 3889999
Q ss_pred HhhccCCcEEEEE
Q 014919 331 SDLLVHDGKVFLQ 343 (416)
Q Consensus 331 ~r~LkpgG~l~l~ 343 (416)
+|+|||||.|.+.
T Consensus 68 ~rvLkpGG~l~i~ 80 (160)
T PLN02232 68 YRVLKPGSRVSIL 80 (160)
T ss_pred HHHcCcCeEEEEE
Confidence 9999999999874
No 178
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.21 E-value=2.1e-05 Score=72.08 Aligned_cols=93 Identities=27% Similarity=0.332 Sum_probs=71.3
Q ss_pred eEEEEeccccHHHHHHHHhCCCCeEEEEchHHH---HHHH-HHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECC
Q 014919 233 LVVDIGSGNGLFLLGMARKRKDLNFLGLELVTH---CRDS-LQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP 308 (416)
Q Consensus 233 ~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~---a~~~-a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fp 308 (416)
.++|||+|.|.=++.||-.+|+.+++.+|.+.+ .++. +.+.+++|++++++.+++. . ...+||.|++--.
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~-~-----~~~~fd~v~aRAv 124 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEP-E-----YRESFDVVTARAV 124 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHT-T-----TTT-EEEEEEESS
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeeccc-c-----cCCCccEEEeehh
Confidence 799999999999999999999999999996432 2222 3467999999999999882 1 3689999998643
Q ss_pred CCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919 309 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 343 (416)
Q Consensus 309 dpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~ 343 (416)
-|. +.+++.+...|++||.+++-
T Consensus 125 ~~l------------~~l~~~~~~~l~~~G~~l~~ 147 (184)
T PF02527_consen 125 APL------------DKLLELARPLLKPGGRLLAY 147 (184)
T ss_dssp SSH------------HHHHHHHGGGEEEEEEEEEE
T ss_pred cCH------------HHHHHHHHHhcCCCCEEEEE
Confidence 332 47889999999999988775
No 179
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.17 E-value=2.6e-05 Score=74.36 Aligned_cols=122 Identities=16% Similarity=0.187 Sum_probs=97.4
Q ss_pred CCCeEEEEeccccHHHHHHHHh-CCCCeEEEEch----HHHHHHHHHHhCC-CcEEEEEcChhhhhhhhhccCCCceeEE
Q 014919 230 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLEL----VTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILV 303 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~-~p~~~~iGvD~----~~~a~~~a~~~~l-~nv~f~~~Da~~l~~~~~~~~~~s~D~v 303 (416)
.+.+|+|-|.|+|.++.++|+. .|.-+++-.|. ..+|++..++.++ +|+.+.+-|+... -|+..+..+|.|
T Consensus 105 PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~---GF~~ks~~aDaV 181 (314)
T KOG2915|consen 105 PGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGS---GFLIKSLKADAV 181 (314)
T ss_pred CCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccC---CccccccccceE
Confidence 3789999999999999999997 47889999995 4567777778886 5899999998764 233236789999
Q ss_pred EEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCc-EEEEEeCcHHHHHHHHHHHHhCCCCceee
Q 014919 304 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDG-KVFLQSDIEEVMLRMKQQFLEYGKGKLVL 367 (416)
Q Consensus 304 ~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG-~l~l~tD~~~~~~~~~~~~~~~~~~~~~~ 367 (416)
++-.|.|| ..+-.++.+||.+| +|+.-+.+-+..+...+.+.+.+|-.+..
T Consensus 182 FLDlPaPw-------------~AiPha~~~lk~~g~r~csFSPCIEQvqrtce~l~~~gf~~i~~ 233 (314)
T KOG2915|consen 182 FLDLPAPW-------------EAIPHAAKILKDEGGRLCSFSPCIEQVQRTCEALRSLGFIEIET 233 (314)
T ss_pred EEcCCChh-------------hhhhhhHHHhhhcCceEEeccHHHHHHHHHHHHHHhCCCceEEE
Confidence 99999999 44555667899876 77766788788888999999999865544
No 180
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.15 E-value=6.8e-05 Score=76.19 Aligned_cols=113 Identities=16% Similarity=0.143 Sum_probs=81.5
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHH----hCCC--cEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL----SGIT--NGYFIATNATSTFRSIVASYPGKLILVS 304 (416)
Q Consensus 231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~----~~l~--nv~f~~~Da~~l~~~~~~~~~~s~D~v~ 304 (416)
+.+||++=|=||.+++..|... ..++++||++..+++++++ ++++ .+.|+++|+.+++...-. ....||+|+
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~gG-A~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~-~g~~fDlIi 295 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALGG-ASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAER-RGEKFDLII 295 (393)
T ss_pred CCeEEEecccCcHHHHHHHhcC-CCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHh-cCCcccEEE
Confidence 7889999999999999988762 3399999998877776654 4653 489999999998764321 234899998
Q ss_pred EECCCCCCCCcchhhhhh--hHHHHHHHHhhccCCcEEEEEeCc
Q 014919 305 IQCPNPDFNRPEHRWRMV--QRSLVEAVSDLLVHDGKVFLQSDI 346 (416)
Q Consensus 305 ~~fpdpw~k~~h~krRl~--~~~~l~~i~r~LkpgG~l~l~tD~ 346 (416)
+- |...-+.+....+.. +..++..+.++|+|||.+++.|..
T Consensus 296 lD-PPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~ 338 (393)
T COG1092 296 LD-PPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCS 338 (393)
T ss_pred EC-CcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 73 222212222211111 368899999999999999998754
No 181
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.14 E-value=1.6e-05 Score=82.81 Aligned_cols=112 Identities=15% Similarity=0.168 Sum_probs=82.4
Q ss_pred CCCeEEEEeccccHHHHHHHHhCC-CCeEEEEchH----HHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLELV----THCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS 304 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p-~~~~iGvD~~----~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~ 304 (416)
.+.+|||++||.|.=+..+|+... ...++++|++ ....+++++.|+.|+.+...|+..+ ...+ ++.||.|.
T Consensus 113 pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~-~~~~---~~~fD~IL 188 (470)
T PRK11933 113 APQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVF-GAAL---PETFDAIL 188 (470)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhh-hhhc---hhhcCeEE
Confidence 468999999999999999999764 4689999974 3445667788999999999999876 3333 46799998
Q ss_pred EECCCC----CCCCcchhhh----------hhhHHHHHHHHhhccCCcEEEEEeC
Q 014919 305 IQCPNP----DFNRPEHRWR----------MVQRSLVEAVSDLLVHDGKVFLQSD 345 (416)
Q Consensus 305 ~~fpdp----w~k~~h~krR----------l~~~~~l~~i~r~LkpgG~l~l~tD 345 (416)
+--|=. |.+++..+++ -.|.++|+...+.|||||+|+.+|-
T Consensus 189 vDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTC 243 (470)
T PRK11933 189 LDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTC 243 (470)
T ss_pred EcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECC
Confidence 753311 1111111111 1367899999999999999988863
No 182
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.14 E-value=2.9e-05 Score=74.03 Aligned_cols=122 Identities=18% Similarity=0.147 Sum_probs=87.1
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCCC
Q 014919 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNP 310 (416)
Q Consensus 231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdp 310 (416)
...+||||.|.|..+..||..+. ++++.|++..++.+.++.|.+ .+ |..++ .+ .+.+||+|.+.-.
T Consensus 95 ~~~lLDlGAGdG~VT~~l~~~f~--~v~aTE~S~~Mr~rL~~kg~~---vl--~~~~w-~~----~~~~fDvIscLNv-- 160 (265)
T PF05219_consen 95 DKSLLDLGAGDGEVTERLAPLFK--EVYATEASPPMRWRLSKKGFT---VL--DIDDW-QQ----TDFKFDVISCLNV-- 160 (265)
T ss_pred CCceEEecCCCcHHHHHHHhhcc--eEEeecCCHHHHHHHHhCCCe---EE--ehhhh-hc----cCCceEEEeehhh--
Confidence 57899999999999999999886 599999999998888877753 22 33333 21 2568999976521
Q ss_pred CCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe---------------------------CcHHHHHHHHHHHHhCCCC
Q 014919 311 DFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS---------------------------DIEEVMLRMKQQFLEYGKG 363 (416)
Q Consensus 311 w~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t---------------------------D~~~~~~~~~~~~~~~~~~ 363 (416)
-+|+.+. ..+|+.+++.|+|+|+++++. -+++....+.++|+..||.
T Consensus 161 --LDRc~~P----~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~~g~~~E~~v~~l~~v~~p~GF~ 234 (265)
T PF05219_consen 161 --LDRCDRP----LTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSELLPVKGATFEEQVSSLVNVFEPAGFE 234 (265)
T ss_pred --hhccCCH----HHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhhcCCCCCcHHHHHHHHHHHHHhcCCE
Confidence 1222221 288999999999999998852 1234555566778888887
Q ss_pred ceeeecccc
Q 014919 364 KLVLVQDEC 372 (416)
Q Consensus 364 ~~~~~~d~~ 372 (416)
....+.-||
T Consensus 235 v~~~tr~PY 243 (265)
T PF05219_consen 235 VERWTRLPY 243 (265)
T ss_pred EEEEeccCc
Confidence 766665566
No 183
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.13 E-value=8.3e-06 Score=75.37 Aligned_cols=110 Identities=18% Similarity=0.164 Sum_probs=73.9
Q ss_pred ccccCCCCCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHH----HHHHHHhCCCcEE-EEEcChhhhhhhhh---c
Q 014919 223 SAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHC----RDSLQLSGITNGY-FIATNATSTFRSIV---A 294 (416)
Q Consensus 223 ~~~f~~~~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a----~~~a~~~~l~nv~-f~~~Da~~l~~~~~---~ 294 (416)
.+.++. .+..|||||||||.++..+|+++|+..+.-.|..... ...+...+++|+. -+.-|+..-...+- +
T Consensus 19 ~~~l~~-~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~ 97 (204)
T PF06080_consen 19 KQYLPD-SGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAP 97 (204)
T ss_pred HHHhCc-cCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccc
Confidence 444554 2336999999999999999999999999999964333 2344556777743 34555544310000 0
Q ss_pred cCCCceeEEEEE---CCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEE
Q 014919 295 SYPGKLILVSIQ---CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 342 (416)
Q Consensus 295 ~~~~s~D~v~~~---fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l 342 (416)
...+++|.|+.. .--||. ....+++...+.|++||.|++
T Consensus 98 ~~~~~~D~i~~~N~lHI~p~~---------~~~~lf~~a~~~L~~gG~L~~ 139 (204)
T PF06080_consen 98 LSPESFDAIFCINMLHISPWS---------AVEGLFAGAARLLKPGGLLFL 139 (204)
T ss_pred cCCCCcceeeehhHHHhcCHH---------HHHHHHHHHHHhCCCCCEEEE
Confidence 124689998643 123441 235899999999999999998
No 184
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.10 E-value=3.8e-05 Score=79.26 Aligned_cols=117 Identities=20% Similarity=0.246 Sum_probs=86.8
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEchH----HHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEE
Q 014919 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELV----THCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 306 (416)
Q Consensus 231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~----~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~ 306 (416)
+.++||+=||.|.|++.||++ ..+++|+|++ +.|.++|+.+++.|++|+.+++.++...+- ....+|.|++
T Consensus 294 ~~~vlDlYCGvG~f~l~lA~~--~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~--~~~~~d~Vvv- 368 (432)
T COG2265 294 GERVLDLYCGVGTFGLPLAKR--VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWW--EGYKPDVVVV- 368 (432)
T ss_pred CCEEEEeccCCChhhhhhccc--CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhcc--ccCCCCEEEE-
Confidence 578999999999999999976 5689999974 456667778899999999999999854321 2357899977
Q ss_pred CCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCC
Q 014919 307 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKG 363 (416)
Q Consensus 307 fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~ 363 (416)
||- ... ..+++++.+.+ ++|-..+|++.+...+++.+. .+...++.
T Consensus 369 --DPP-R~G------~~~~~lk~l~~-~~p~~IvYVSCNP~TlaRDl~-~L~~~gy~ 414 (432)
T COG2265 369 --DPP-RAG------ADREVLKQLAK-LKPKRIVYVSCNPATLARDLA-ILASTGYE 414 (432)
T ss_pred --CCC-CCC------CCHHHHHHHHh-cCCCcEEEEeCCHHHHHHHHH-HHHhCCeE
Confidence 552 222 12467766655 588899999988877777655 45555554
No 185
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.08 E-value=2.6e-05 Score=74.91 Aligned_cols=70 Identities=17% Similarity=0.176 Sum_probs=52.9
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHh--CCCcEEEEEcChhhhhhhhhccCCCcee---EEE
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS--GITNGYFIATNATSTFRSIVASYPGKLI---LVS 304 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~--~l~nv~f~~~Da~~l~~~~~~~~~~s~D---~v~ 304 (416)
++..|||||||+|.++..|+++.+ .++++|....+.+.+++. ..+|++++++|+..+ + ..++| .|+
T Consensus 29 ~~~~VLEiG~G~G~lt~~L~~~~~--~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~-----~--~~~~d~~~~vv 99 (253)
T TIGR00755 29 EGDVVLEIGPGLGALTEPLLKRAK--KVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKV-----D--LPDFPKQLKVV 99 (253)
T ss_pred CcCEEEEeCCCCCHHHHHHHHhCC--cEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcC-----C--hhHcCCcceEE
Confidence 468999999999999999999975 599999876666655432 246899999999876 1 11345 777
Q ss_pred EECC
Q 014919 305 IQCP 308 (416)
Q Consensus 305 ~~fp 308 (416)
.|.|
T Consensus 100 sNlP 103 (253)
T TIGR00755 100 SNLP 103 (253)
T ss_pred EcCC
Confidence 7743
No 186
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.06 E-value=1e-05 Score=78.68 Aligned_cols=71 Identities=15% Similarity=0.093 Sum_probs=53.7
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhC-CCcEEEEEcChhhhhhhhhccCCCceeEEEEEC
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSG-ITNGYFIATNATSTFRSIVASYPGKLILVSIQC 307 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~-l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~f 307 (416)
.+..|||||||+|.++..++++.+ +++|+|++..+.+.++++- .+|++++++|+.++ + + ++-..+.|+.|.
T Consensus 42 ~~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~-~--~--~~~~~~~vv~Nl 113 (272)
T PRK00274 42 PGDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAETFAEDNLTIIEGDALKV-D--L--SELQPLKVVANL 113 (272)
T ss_pred CcCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHhhccCceEEEEChhhcC-C--H--HHcCcceEEEeC
Confidence 357899999999999999999965 8999998777766654321 26899999999876 1 1 121147788883
No 187
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.06 E-value=3e-05 Score=70.32 Aligned_cols=105 Identities=17% Similarity=0.243 Sum_probs=64.4
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEch---HHHHHHHHHHhC---CCcEEEEEcChhhhh-hhhhccCCCceeE
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL---VTHCRDSLQLSG---ITNGYFIATNATSTF-RSIVASYPGKLIL 302 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~---~~~a~~~a~~~~---l~nv~f~~~Da~~l~-~~~~~~~~~s~D~ 302 (416)
.+.+|||||||+|..++.+|+..+..+++..|. +.....+++.++ ..++++...|=.+-. ...+ ...+||.
T Consensus 45 ~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~--~~~~~D~ 122 (173)
T PF10294_consen 45 RGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLL--EPHSFDV 122 (173)
T ss_dssp TTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHH--S-SSBSE
T ss_pred CCceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCccccccc--ccccCCE
Confidence 468999999999999999999877889999996 334444555444 345777666532211 2222 3568999
Q ss_pred EEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919 303 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 344 (416)
Q Consensus 303 v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t 344 (416)
|+.. |-.+... ..+.+++.+.+.|+|+|.+++..
T Consensus 123 Ilas--Dv~Y~~~------~~~~L~~tl~~ll~~~~~vl~~~ 156 (173)
T PF10294_consen 123 ILAS--DVLYDEE------LFEPLVRTLKRLLKPNGKVLLAY 156 (173)
T ss_dssp EEEE--S--S-GG------GHHHHHHHHHHHBTT-TTEEEEE
T ss_pred EEEe--cccchHH------HHHHHHHHHHHHhCCCCEEEEEe
Confidence 9865 6554322 23699999999999999988764
No 188
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.05 E-value=1.3e-05 Score=77.28 Aligned_cols=70 Identities=20% Similarity=0.221 Sum_probs=54.2
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHh--CCCcEEEEEcChhhhhhhhhccCCCceeEEEEEC
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS--GITNGYFIATNATSTFRSIVASYPGKLILVSIQC 307 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~--~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~f 307 (416)
.+..|||||||+|.++..++++ ..+++|+|+...+.+.+++. ..+|+.++++|+.++ + ...+|.|+.|.
T Consensus 29 ~~~~VLEIG~G~G~lt~~L~~~--~~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~-----~--~~~~d~Vv~Nl 99 (258)
T PRK14896 29 DGDPVLEIGPGKGALTDELAKR--AKKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKV-----D--LPEFNKVVSNL 99 (258)
T ss_pred CcCeEEEEeCccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccC-----C--chhceEEEEcC
Confidence 3688999999999999999998 35899999876665554432 246899999999876 2 22479998884
Q ss_pred C
Q 014919 308 P 308 (416)
Q Consensus 308 p 308 (416)
|
T Consensus 100 P 100 (258)
T PRK14896 100 P 100 (258)
T ss_pred C
Confidence 4
No 189
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.04 E-value=6.5e-05 Score=73.27 Aligned_cols=115 Identities=15% Similarity=0.140 Sum_probs=88.6
Q ss_pred CCCCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHh-------C-CCcEEEEEcChhhhhhhhhccCCCc
Q 014919 228 DPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS-------G-ITNGYFIATNATSTFRSIVASYPGK 299 (416)
Q Consensus 228 ~~~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~-------~-l~nv~f~~~Da~~l~~~~~~~~~~s 299 (416)
+++..+||-||-|.|..+..+.+..+..+++.||+....++.+++. . -+++.++.+|+.+++.+ ....
T Consensus 74 h~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~----~~~~ 149 (282)
T COG0421 74 HPNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRD----CEEK 149 (282)
T ss_pred CCCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHh----CCCc
Confidence 3345699999999999999999998889999999755555444321 1 26799999999998753 2348
Q ss_pred eeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHH
Q 014919 300 LILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVM 350 (416)
Q Consensus 300 ~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~ 350 (416)
||+|++...|| .. +-..+++..|++.+++.|+++|.+..++.+..+.
T Consensus 150 fDvIi~D~tdp-~g---p~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~~~~~ 196 (282)
T COG0421 150 FDVIIVDSTDP-VG---PAEALFTEEFYEGCRRALKEDGIFVAQAGSPFLQ 196 (282)
T ss_pred CCEEEEcCCCC-CC---cccccCCHHHHHHHHHhcCCCcEEEEecCCcccc
Confidence 99999987777 21 2234778899999999999999999986654443
No 190
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.03 E-value=3.2e-05 Score=73.19 Aligned_cols=147 Identities=12% Similarity=0.010 Sum_probs=81.5
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcE-EEEEcChhhhhhhhhccCCCceeEEEEECC
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNG-YFIATNATSTFRSIVASYPGKLILVSIQCP 308 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv-~f~~~Da~~l~~~~~~~~~~s~D~v~~~fp 308 (416)
.+..+||+|||+|.++..++++ +..+++|+|++...+....+.. .++ .+...|+..+..+.++..-..+|+.++..
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~~l~~~-~~v~~~~~~ni~~~~~~~~~~d~~~~DvsfiS~- 151 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAEKLRQD-ERVKVLERTNIRYVTPADIFPDFATFDVSFISL- 151 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHhcC-CCeeEeecCCcccCCHhHcCCCceeeeEEEeeh-
Confidence 4679999999999999999987 4568999998764444311111 222 23444444321111111123677766652
Q ss_pred CCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCCceeeeccccccccCCCCCCCCCCCC
Q 014919 309 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENSFG 388 (416)
Q Consensus 309 dpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 388 (416)
...+..+.+.|+| |.+.+-. .+.||--.+.....|. +. | .+.| ..
T Consensus 152 ---------------~~~l~~i~~~l~~-~~~~~L~--KPqFE~~~~~~~~~gi----v~-~---~~~~---------~~ 196 (228)
T TIGR00478 152 ---------------ISILPELDLLLNP-NDLTLLF--KPQFEAGREKKNKKGV----VR-D---KEAI---------AL 196 (228)
T ss_pred ---------------HhHHHHHHHHhCc-CeEEEEc--ChHhhhcHhhcCcCCe----ec-C---HHHH---------HH
Confidence 1357888999999 7766532 4455544333322221 10 1 0011 13
Q ss_pred CCCHHHHHHHHCCCCeEEEEEEeCCC
Q 014919 389 VRSDWEQHVIDRGAPMYRLMLSKPSC 414 (416)
Q Consensus 389 ~~T~~E~k~~~~G~~i~~~~~~k~~~ 414 (416)
...+....+.+.|..+..+....+++
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~s~i~G 222 (228)
T TIGR00478 197 ALHKVIDKGESPDFQEKKIIFSLTKG 222 (228)
T ss_pred HHHHHHHHHHcCCCeEeeEEECCCCC
Confidence 34455555666677776666655543
No 191
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=97.99 E-value=1.2e-05 Score=74.23 Aligned_cols=108 Identities=9% Similarity=0.103 Sum_probs=63.6
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCC
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN 309 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpd 309 (416)
..-+|.|+|||.+.++..+.. ..+|.-.|+++. |=.++.+|+..+ |++++++|.+.+..+.
T Consensus 72 ~~~viaD~GCGdA~la~~~~~---~~~V~SfDLva~-----------n~~Vtacdia~v-----PL~~~svDv~VfcLSL 132 (219)
T PF05148_consen 72 KSLVIADFGCGDAKLAKAVPN---KHKVHSFDLVAP-----------NPRVTACDIANV-----PLEDESVDVAVFCLSL 132 (219)
T ss_dssp TTS-EEEES-TT-HHHHH--S------EEEEESS-S-----------STTEEES-TTS------S--TT-EEEEEEES--
T ss_pred CCEEEEECCCchHHHHHhccc---CceEEEeeccCC-----------CCCEEEecCccC-----cCCCCceeEEEEEhhh
Confidence 467999999999988755432 357999998652 223567999877 6689999998765332
Q ss_pred CCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHH--HHHHHHHHHHhCCCCce
Q 014919 310 PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEE--VMLRMKQQFLEYGKGKL 365 (416)
Q Consensus 310 pw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~--~~~~~~~~~~~~~~~~~ 365 (416)
+... ...|+.|..|+|||||.|.++--... -.+...+.++..||...
T Consensus 133 --MGTn-------~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~GF~~~ 181 (219)
T PF05148_consen 133 --MGTN-------WPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKKLGFKLK 181 (219)
T ss_dssp ---SS--------HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCTTEEEE
T ss_pred --hCCC-------cHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHHCCCeEE
Confidence 1111 25999999999999999999621100 12334566778887654
No 192
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=97.96 E-value=7.6e-05 Score=75.74 Aligned_cols=102 Identities=14% Similarity=0.225 Sum_probs=79.5
Q ss_pred CeEEEEeccccHHHHHHHHhCC-CCeEEEEchHHHHH----HHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEE
Q 014919 232 PLVVDIGSGNGLFLLGMARKRK-DLNFLGLELVTHCR----DSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 306 (416)
Q Consensus 232 ~~vLDIGCG~G~~~~~lA~~~p-~~~~iGvD~~~~a~----~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~ 306 (416)
..+||+-||+|..++.++.+.+ -..++++|++..|. ++++.++++|+.+++.|+..++.. ....||.|.+
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~----~~~~fDvIdl- 120 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRY----RNRKFHVIDI- 120 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHH----hCCCCCEEEe-
Confidence 5899999999999999999854 35899999866554 445556778899999999988542 1357998876
Q ss_pred CCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE-eCcHHH
Q 014919 307 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ-SDIEEV 349 (416)
Q Consensus 307 fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~-tD~~~~ 349 (416)
||. ... ..|++.+.+.++++|.+++. ||...+
T Consensus 121 --DPf-Gs~--------~~fld~al~~~~~~glL~vTaTD~~~L 153 (374)
T TIGR00308 121 --DPF-GTP--------APFVDSAIQASAERGLLLVTATDTSAL 153 (374)
T ss_pred --CCC-CCc--------HHHHHHHHHhcccCCEEEEEecccHHh
Confidence 673 221 27999999999999999986 786654
No 193
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=97.93 E-value=3.6e-05 Score=75.69 Aligned_cols=72 Identities=18% Similarity=0.170 Sum_probs=54.5
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHH----HHhC-CCcEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL----QLSG-ITNGYFIATNATSTFRSIVASYPGKLILVS 304 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a----~~~~-l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~ 304 (416)
.+..|||||||+|.++..+++.. .+++|+|+...+.+.+ ...+ .+|++++++|+... + ...+|.|+
T Consensus 36 ~~~~VLEIG~G~G~LT~~Ll~~~--~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~-----~--~~~~d~Vv 106 (294)
T PTZ00338 36 PTDTVLEIGPGTGNLTEKLLQLA--KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKT-----E--FPYFDVCV 106 (294)
T ss_pred CcCEEEEecCchHHHHHHHHHhC--CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhh-----c--ccccCEEE
Confidence 36789999999999999999874 5799999765554443 3334 46899999999875 1 23679999
Q ss_pred EECCCC
Q 014919 305 IQCPNP 310 (416)
Q Consensus 305 ~~fpdp 310 (416)
.|.|.-
T Consensus 107 aNlPY~ 112 (294)
T PTZ00338 107 ANVPYQ 112 (294)
T ss_pred ecCCcc
Confidence 885543
No 194
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=97.93 E-value=2.4e-05 Score=70.08 Aligned_cols=73 Identities=18% Similarity=0.241 Sum_probs=50.5
Q ss_pred eEEEEeccccHHHHHHHHhCCCCeEEEEch----HHHHHHHHHHhCC-CcEEEEEcChhhhhhhhhccCCCc-eeEEEEE
Q 014919 233 LVVDIGSGNGLFLLGMARKRKDLNFLGLEL----VTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGK-LILVSIQ 306 (416)
Q Consensus 233 ~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~----~~~a~~~a~~~~l-~nv~f~~~Da~~l~~~~~~~~~~s-~D~v~~~ 306 (416)
+|+|+.||.|..++.+|+.++ ++++||+ +..|+.+++-.|. +||.|+++|..+++... .... +|.|++.
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~--~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~---~~~~~~D~vFlS 76 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFD--RVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRL---KSNKIFDVVFLS 76 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB---------SEEEE-
T ss_pred EEEEeccCcCHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhc---cccccccEEEEC
Confidence 689999999999999999964 7999996 4456667777785 58999999999985432 1222 7999876
Q ss_pred CCCCCC
Q 014919 307 CPNPDF 312 (416)
Q Consensus 307 fpdpw~ 312 (416)
.||=
T Consensus 77 --PPWG 80 (163)
T PF09445_consen 77 --PPWG 80 (163)
T ss_dssp ----BS
T ss_pred --CCCC
Confidence 7884
No 195
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=97.90 E-value=4.2e-05 Score=72.45 Aligned_cols=102 Identities=13% Similarity=0.234 Sum_probs=72.0
Q ss_pred CCCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECC
Q 014919 229 PAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP 308 (416)
Q Consensus 229 ~~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fp 308 (416)
+...+|-|+|||-+.++. .. ..+|+.+|++. .|=+++.||+..+ |++++++|++++..+
T Consensus 179 ~~~~vIaD~GCGEakiA~--~~---~~kV~SfDL~a-----------~~~~V~~cDm~~v-----Pl~d~svDvaV~CLS 237 (325)
T KOG3045|consen 179 PKNIVIADFGCGEAKIAS--SE---RHKVHSFDLVA-----------VNERVIACDMRNV-----PLEDESVDVAVFCLS 237 (325)
T ss_pred cCceEEEecccchhhhhh--cc---ccceeeeeeec-----------CCCceeeccccCC-----cCccCcccEEEeeHh
Confidence 357899999999998765 22 23688888754 2446778999887 668999998764322
Q ss_pred CCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe------CcHHHHHHHHHHHHhCCCCc
Q 014919 309 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS------DIEEVMLRMKQQFLEYGKGK 364 (416)
Q Consensus 309 dpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t------D~~~~~~~~~~~~~~~~~~~ 364 (416)
.+... ...|+.+++|+|+|||.++++- |... ..+.+...||..
T Consensus 238 --LMgtn-------~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~----f~r~l~~lGF~~ 286 (325)
T KOG3045|consen 238 --LMGTN-------LADFIKEANRILKPGGLLYIAEVKSRFSDVKG----FVRALTKLGFDV 286 (325)
T ss_pred --hhccc-------HHHHHHHHHHHhccCceEEEEehhhhcccHHH----HHHHHHHcCCee
Confidence 11111 1489999999999999999972 3322 455677788764
No 196
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.87 E-value=1.7e-05 Score=65.52 Aligned_cols=96 Identities=17% Similarity=0.227 Sum_probs=43.3
Q ss_pred EEEeccccHHHHHHHHhCCCC---eEEEEchHH---HHHHHHHHhCC-CcEEEEEcChhhhhhhhhccCCCceeEEEEEC
Q 014919 235 VDIGSGNGLFLLGMARKRKDL---NFLGLELVT---HCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVSIQC 307 (416)
Q Consensus 235 LDIGCG~G~~~~~lA~~~p~~---~~iGvD~~~---~a~~~a~~~~l-~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~f 307 (416)
|||||..|.++..+++..+.. +++++|... .+.+.+++.++ .++++++++..+.++... .+++|.+++--
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~---~~~~dli~iDg 77 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLP---DGPIDLIFIDG 77 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHH---H--EEEEEEES
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcC---CCCEEEEEECC
Confidence 799999999999999876544 699999755 45555554554 479999999988765432 57899998852
Q ss_pred CCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEE
Q 014919 308 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 342 (416)
Q Consensus 308 pdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l 342 (416)
.|.... ....++.+.+.|+|||.+++
T Consensus 78 -------~H~~~~--~~~dl~~~~~~l~~ggviv~ 103 (106)
T PF13578_consen 78 -------DHSYEA--VLRDLENALPRLAPGGVIVF 103 (106)
T ss_dssp ----------HHH--HHHHHHHHGGGEEEEEEEEE
T ss_pred -------CCCHHH--HHHHHHHHHHHcCCCeEEEE
Confidence 222111 13568889999999999887
No 197
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.85 E-value=9.4e-06 Score=83.51 Aligned_cols=97 Identities=14% Similarity=0.106 Sum_probs=63.7
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEch-----HHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL-----VTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS 304 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~-----~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~ 304 (416)
.-.++||||||+|.|+..|.++ +++.+-+ -+...+-+.+.|++-+.-+.+ ...+|+++++||+|+
T Consensus 117 ~iR~~LDvGcG~aSF~a~l~~r----~V~t~s~a~~d~~~~qvqfaleRGvpa~~~~~~------s~rLPfp~~~fDmvH 186 (506)
T PF03141_consen 117 GIRTALDVGCGVASFGAYLLER----NVTTMSFAPNDEHEAQVQFALERGVPAMIGVLG------SQRLPFPSNAFDMVH 186 (506)
T ss_pred ceEEEEeccceeehhHHHHhhC----CceEEEcccccCCchhhhhhhhcCcchhhhhhc------cccccCCccchhhhh
Confidence 3578999999999999999987 3444332 111223334456542211111 223477899999996
Q ss_pred E-ECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919 305 I-QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 344 (416)
Q Consensus 305 ~-~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t 344 (416)
+ .+-.||.... .-+|-++.|+|+|||+|+++.
T Consensus 187 csrc~i~W~~~~--------g~~l~evdRvLRpGGyfv~S~ 219 (506)
T PF03141_consen 187 CSRCLIPWHPND--------GFLLFEVDRVLRPGGYFVLSG 219 (506)
T ss_pred cccccccchhcc--------cceeehhhhhhccCceEEecC
Confidence 4 3567886432 247889999999999999863
No 198
>PRK04148 hypothetical protein; Provisional
Probab=97.85 E-value=8.7e-05 Score=64.28 Aligned_cols=72 Identities=10% Similarity=0.091 Sum_probs=54.6
Q ss_pred CCCeEEEEeccccH-HHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECC
Q 014919 230 AQPLVVDIGSGNGL-FLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP 308 (416)
Q Consensus 230 ~~~~vLDIGCG~G~-~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fp 308 (416)
++.++||||||.|. .+..|++. +.+++|+|+++.+.+.+++.+ +.++++|..+--.++ -..+|.|+..-|
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~--G~~ViaIDi~~~aV~~a~~~~---~~~v~dDlf~p~~~~----y~~a~liysirp 86 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKES--GFDVIVIDINEKAVEKAKKLG---LNAFVDDLFNPNLEI----YKNAKLIYSIRP 86 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHC--CCEEEEEECCHHHHHHHHHhC---CeEEECcCCCCCHHH----HhcCCEEEEeCC
Confidence 45789999999996 77788865 679999999999888887654 578899987641111 256899998755
Q ss_pred CC
Q 014919 309 NP 310 (416)
Q Consensus 309 dp 310 (416)
.|
T Consensus 87 p~ 88 (134)
T PRK04148 87 PR 88 (134)
T ss_pred CH
Confidence 44
No 199
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.82 E-value=0.00026 Score=66.23 Aligned_cols=102 Identities=18% Similarity=0.256 Sum_probs=78.9
Q ss_pred CCCeEEEEeccccHHHHHHHHhCC-CCeEEEEchHHHH----HHHHHHhCCC-cEEEEEcChhhhhhhhhcc-CCCceeE
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLELVTHC----RDSLQLSGIT-NGYFIATNATSTFRSIVAS-YPGKLIL 302 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p-~~~~iGvD~~~~a----~~~a~~~~l~-nv~f~~~Da~~l~~~~~~~-~~~s~D~ 302 (416)
+..++||||.=||..++..|...| +.+++++|+...+ .+..+..|.. .|.++++.+.+.+++.++- +.++||.
T Consensus 73 ~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDf 152 (237)
T KOG1663|consen 73 NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDF 152 (237)
T ss_pred CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeE
Confidence 368999999999999999999887 5699999985443 3334455654 6999999999988776631 3578998
Q ss_pred EEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEE
Q 014919 303 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 342 (416)
Q Consensus 303 v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l 342 (416)
+|+ |.| |++ +-.+++++.+.||+||.+++
T Consensus 153 aFv---Dad------K~n--Y~~y~e~~l~Llr~GGvi~~ 181 (237)
T KOG1663|consen 153 AFV---DAD------KDN--YSNYYERLLRLLRVGGVIVV 181 (237)
T ss_pred EEE---ccc------hHH--HHHHHHHHHhhcccccEEEE
Confidence 866 666 322 23788999999999999987
No 200
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=97.82 E-value=0.00012 Score=72.65 Aligned_cols=119 Identities=17% Similarity=0.256 Sum_probs=84.3
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHH----HHHhCCCcEEEEEc-ChhhhhhhhhccCCCceeEEEE
Q 014919 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDS----LQLSGITNGYFIAT-NATSTFRSIVASYPGKLILVSI 305 (416)
Q Consensus 231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~----a~~~~l~nv~f~~~-Da~~l~~~~~~~~~~s~D~v~~ 305 (416)
+..+||==||||.++++..-. +++++|.|+...+.+. .+..++++..+... |+..+ |+++.++|.|..
T Consensus 198 G~~vlDPFcGTGgiLiEagl~--G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~l-----pl~~~~vdaIat 270 (347)
T COG1041 198 GELVLDPFCGTGGILIEAGLM--GARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNL-----PLRDNSVDAIAT 270 (347)
T ss_pred CCEeecCcCCccHHHHhhhhc--CceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccC-----CCCCCccceEEe
Confidence 679999999999999998876 7899999976555444 44456777766666 99987 445678999976
Q ss_pred ECCCCCCCC-cchhh-h--hhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCCc
Q 014919 306 QCPNPDFNR-PEHRW-R--MVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGK 364 (416)
Q Consensus 306 ~fpdpw~k~-~h~kr-R--l~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~~ 364 (416)
||.... ...|. + -+..++|+.++++||+||++.|.++..+ .+.+...++..
T Consensus 271 ---DPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p~~~-----~~~~~~~~f~v 325 (347)
T COG1041 271 ---DPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAPRDP-----RHELEELGFKV 325 (347)
T ss_pred ---cCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecCCcc-----hhhHhhcCceE
Confidence 443322 11121 1 1246899999999999999999988322 23345556653
No 201
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=97.81 E-value=8.1e-05 Score=76.71 Aligned_cols=115 Identities=21% Similarity=0.318 Sum_probs=77.4
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHH----HHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTH----CRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 305 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~----a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~ 305 (416)
....+||+-||||.+.+.+|+. -..++|||+++. |.++|+.+|++|.+|+++.++++++..+...-++=+.+.+
T Consensus 383 ~~k~llDv~CGTG~iglala~~--~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~~~~sl~~~~~~~~~~v~i 460 (534)
T KOG2187|consen 383 ADKTLLDVCCGTGTIGLALARG--VKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAEDLFPSLLTPCCDSETLVAI 460 (534)
T ss_pred CCcEEEEEeecCCceehhhhcc--ccceeeeecChhhcchhhhcchhcCccceeeeecchhhccchhcccCCCCCceEEE
Confidence 4589999999999999999987 458999998554 5666778899999999998888765444211123333444
Q ss_pred ECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHH
Q 014919 306 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQ 355 (416)
Q Consensus 306 ~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~ 355 (416)
. ||--+-.| ..+++.+.+.-.+-=.+|++......+....+
T Consensus 461 i--DPpR~Glh-------~~~ik~l~~~~~~~rlvyvSCn~~t~ar~v~~ 501 (534)
T KOG2187|consen 461 I--DPPRKGLH-------MKVIKALRAYKNPRRLVYVSCNPHTAARNVID 501 (534)
T ss_pred E--CCCccccc-------HHHHHHHHhccCccceEEEEcCHHHhhhhHHH
Confidence 3 66333333 36777776665577777776654433333333
No 202
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=97.77 E-value=0.00021 Score=69.78 Aligned_cols=112 Identities=16% Similarity=0.155 Sum_probs=74.7
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHH----HhCC--CcEEEEEcChhhhhhhhhccCCCceeEE
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ----LSGI--TNGYFIATNATSTFRSIVASYPGKLILV 303 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~----~~~l--~nv~f~~~Da~~l~~~~~~~~~~s~D~v 303 (416)
.+.+|||+=|=||.|++..|.. ....++.||++..|++.++ .+++ ++++|++.|+.+.+...- ..+.||.|
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~g-GA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~--~~~~fD~I 199 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAG-GAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLK--KGGRFDLI 199 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHT-TESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHH--HTT-EEEE
T ss_pred CCCceEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHh--cCCCCCEE
Confidence 4789999999999999987654 3458999998777666554 4565 479999999988765421 25689999
Q ss_pred EEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCc
Q 014919 304 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI 346 (416)
Q Consensus 304 ~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~ 346 (416)
++. |..+.+.+..-.| -+.+++..+.++|+|||.|++.|..
T Consensus 200 IlD-PPsF~k~~~~~~~-~y~~L~~~a~~ll~~gG~l~~~scs 240 (286)
T PF10672_consen 200 ILD-PPSFAKSKFDLER-DYKKLLRRAMKLLKPGGLLLTCSCS 240 (286)
T ss_dssp EE---SSEESSTCEHHH-HHHHHHHHHHHTEEEEEEEEEEE--
T ss_pred EEC-CCCCCCCHHHHHH-HHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 884 3233222221112 2357889999999999999887654
No 203
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=97.75 E-value=0.00017 Score=65.99 Aligned_cols=140 Identities=16% Similarity=0.188 Sum_probs=83.1
Q ss_pred CceEeeeecc-cCCCCcccccccCccccccccccCCCCCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHH----
Q 014919 194 GSAVWEFLKG-RMLPGVSALDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRD---- 268 (416)
Q Consensus 194 GGa~le~l~g-r~lPg~~aL~~~~p~~~~~~~~f~~~~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~---- 268 (416)
.|--+....+ ..+|..+.+.+.. -+|.... ...+.++||+=||+|..+++...+. ...++.||.+..|.+
T Consensus 9 kgr~l~~p~~~~~RPT~drvreal---FniL~~~-~~~g~~vLDLFaGSGalGlEALSRG-A~~v~fVE~~~~a~~~i~~ 83 (183)
T PF03602_consen 9 KGRKLKTPKGDNTRPTTDRVREAL---FNILQPR-NLEGARVLDLFAGSGALGLEALSRG-AKSVVFVEKNRKAIKIIKK 83 (183)
T ss_dssp TT-EEE-TT--TS-SSSHHHHHHH---HHHHHCH--HTT-EEEETT-TTSHHHHHHHHTT--SEEEEEES-HHHHHHHHH
T ss_pred CCCEecCCCCCCcCCCcHHHHHHH---HHHhccc-ccCCCeEEEcCCccCccHHHHHhcC-CCeEEEEECCHHHHHHHHH
Confidence 3455555554 4566554444332 1232221 0147999999999999999877764 458999997655544
Q ss_pred HHHHhCCCc-EEEEEcChhhhhhhhhccCCCceeEEEEECCCCCCCCcchhhhhhhHHHHHHHH--hhccCCcEEEEEeC
Q 014919 269 SLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVS--DLLVHDGKVFLQSD 345 (416)
Q Consensus 269 ~a~~~~l~n-v~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~--r~LkpgG~l~l~tD 345 (416)
+++..+..+ ++.++.|+...+.... .....||.|++- .|+ .... ..+..++.+. .+|+++|.+++.++
T Consensus 84 N~~~l~~~~~~~v~~~d~~~~l~~~~-~~~~~fDiIflD--PPY-~~~~-----~~~~~l~~l~~~~~l~~~~~ii~E~~ 154 (183)
T PF03602_consen 84 NLEKLGLEDKIRVIKGDAFKFLLKLA-KKGEKFDIIFLD--PPY-AKGL-----YYEELLELLAENNLLNEDGLIIIEHS 154 (183)
T ss_dssp HHHHHT-GGGEEEEESSHHHHHHHHH-HCTS-EEEEEE----ST-TSCH-----HHHHHHHHHHHTTSEEEEEEEEEEEE
T ss_pred HHHHhCCCcceeeeccCHHHHHHhhc-ccCCCceEEEEC--CCc-ccch-----HHHHHHHHHHHCCCCCCCEEEEEEec
Confidence 444556665 9999999887654331 136789999874 333 2221 1246677776 89999999999876
Q ss_pred cH
Q 014919 346 IE 347 (416)
Q Consensus 346 ~~ 347 (416)
..
T Consensus 155 ~~ 156 (183)
T PF03602_consen 155 KK 156 (183)
T ss_dssp TT
T ss_pred CC
Confidence 43
No 204
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.74 E-value=0.00046 Score=66.81 Aligned_cols=119 Identities=16% Similarity=0.214 Sum_probs=83.6
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCC--CeEEEEchH----HHHHHHHHHhCCCcE-EEEEcChhhhhhhhhccCCCceeE
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRKD--LNFLGLELV----THCRDSLQLSGITNG-YFIATNATSTFRSIVASYPGKLIL 302 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p~--~~~iGvD~~----~~a~~~a~~~~l~nv-~f~~~Da~~l~~~~~~~~~~s~D~ 302 (416)
..-+||||.||.|...+.....+|. ..+.-.|.+ +...+.+++.|++++ +|.++|+.+. ..+-. .....++
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~-~~l~~-l~p~P~l 212 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDR-DSLAA-LDPAPTL 212 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCH-hHhhc-cCCCCCE
Confidence 4578999999999999999999987 788888963 455666778899997 9999999775 22211 1122344
Q ss_pred EEE-----ECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe-CcHHHHHHHHHHHHhC
Q 014919 303 VSI-----QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS-DIEEVMLRMKQQFLEY 360 (416)
Q Consensus 303 v~~-----~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t-D~~~~~~~~~~~~~~~ 360 (416)
+++ .|||- .++ ...|.-++++|.|||+++... +|.+..+.+...+..|
T Consensus 213 ~iVsGL~ElF~Dn---------~lv-~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsH 266 (311)
T PF12147_consen 213 AIVSGLYELFPDN---------DLV-RRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSH 266 (311)
T ss_pred EEEecchhhCCcH---------HHH-HHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcc
Confidence 433 35542 122 356889999999999998842 4666666556666554
No 205
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=97.69 E-value=0.00032 Score=70.75 Aligned_cols=117 Identities=23% Similarity=0.328 Sum_probs=71.5
Q ss_pred CeEEEEeccccHHHHHHHHhCCCCeEEEEchHH----HHHHHHHHhCCCcEEEEEcChhhhhhhh-----h------ccC
Q 014919 232 PLVVDIGSGNGLFLLGMARKRKDLNFLGLELVT----HCRDSLQLSGITNGYFIATNATSTFRSI-----V------ASY 296 (416)
Q Consensus 232 ~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~----~a~~~a~~~~l~nv~f~~~Da~~l~~~~-----~------~~~ 296 (416)
..+||+=||.|.+++.||+.. .+++|||++. .|.++++.++++|++|+++++.++...+ | ...
T Consensus 198 ~~vlDlycG~G~fsl~la~~~--~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~~~~~~~r~~~~~~~~~~~ 275 (352)
T PF05958_consen 198 GDVLDLYCGVGTFSLPLAKKA--KKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDFAKALAKAREFNRLKGIDLK 275 (352)
T ss_dssp TEEEEES-TTTCCHHHHHCCS--SEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHCCCHHCCS-GGTTGGGS-GG
T ss_pred CcEEEEeecCCHHHHHHHhhC--CeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccchhHHHHhhHHHHhhhhhhhh
Confidence 379999999999999999885 4899999754 4566677789999999999987652211 0 001
Q ss_pred CCceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCCce
Q 014919 297 PGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKL 365 (416)
Q Consensus 297 ~~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~~~ 365 (416)
...+|.|.+ ||- ... ..+.+++.+. ++.=.+|+++|...+.+.+.. |.+ ++.+.
T Consensus 276 ~~~~d~vil---DPP-R~G------~~~~~~~~~~---~~~~ivYvSCnP~tlaRDl~~-L~~-~y~~~ 329 (352)
T PF05958_consen 276 SFKFDAVIL---DPP-RAG------LDEKVIELIK---KLKRIVYVSCNPATLARDLKI-LKE-GYKLE 329 (352)
T ss_dssp CTTESEEEE-------TT-------SCHHHHHHHH---HSSEEEEEES-HHHHHHHHHH-HHC-CEEEE
T ss_pred hcCCCEEEE---cCC-CCC------chHHHHHHHh---cCCeEEEEECCHHHHHHHHHH-Hhh-cCEEE
Confidence 235788866 552 222 1235555543 345688999988888777654 543 65543
No 206
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=97.68 E-value=0.00045 Score=69.79 Aligned_cols=113 Identities=16% Similarity=0.237 Sum_probs=80.3
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCC--CeEEEEchH----HHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEE
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRKD--LNFLGLELV----THCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILV 303 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p~--~~~iGvD~~----~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v 303 (416)
.+.+|||+..+.|.=+..+|+..++ ..++++|++ ....+++++.|+.|+..++.|+..+..... ..+.||.|
T Consensus 156 pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~--~~~~fD~i 233 (355)
T COG0144 156 PGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLP--GGEKFDRI 233 (355)
T ss_pred CcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEeccccccccccc--ccCcCcEE
Confidence 4789999999999999999998764 567999974 345566778899999999999887632211 12359999
Q ss_pred EEECCCC----CCCCcchhh----------hhhhHHHHHHHHhhccCCcEEEEEe
Q 014919 304 SIQCPNP----DFNRPEHRW----------RMVQRSLVEAVSDLLVHDGKVFLQS 344 (416)
Q Consensus 304 ~~~fpdp----w~k~~h~kr----------Rl~~~~~l~~i~r~LkpgG~l~l~t 344 (416)
.+--|=. +.+++..|+ --+|.++|+...+.|||||.|..+|
T Consensus 234 LlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYST 288 (355)
T COG0144 234 LLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYST 288 (355)
T ss_pred EECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEc
Confidence 7642100 111111111 1247899999999999999999986
No 207
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.68 E-value=0.00028 Score=77.45 Aligned_cols=116 Identities=16% Similarity=0.099 Sum_probs=74.8
Q ss_pred CCeEEEEeccccHHHHHHHHhC------------------------------------------CCCeEEEEchHH----
Q 014919 231 QPLVVDIGSGNGLFLLGMARKR------------------------------------------KDLNFLGLELVT---- 264 (416)
Q Consensus 231 ~~~vLDIGCG~G~~~~~lA~~~------------------------------------------p~~~~iGvD~~~---- 264 (416)
+..++|-.||+|.++++.|... +...++|+|+..
T Consensus 191 ~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av~ 270 (702)
T PRK11783 191 GTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVIQ 270 (702)
T ss_pred CCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHHH
Confidence 5789999999999999987631 123699999754
Q ss_pred HHHHHHHHhCCCc-EEEEEcChhhhhhhhhccCCCceeEEEEECCCCCCCCcchhh--hhhhHHHHHHHHhhccCCcEEE
Q 014919 265 HCRDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRW--RMVQRSLVEAVSDLLVHDGKVF 341 (416)
Q Consensus 265 ~a~~~a~~~~l~n-v~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdpw~k~~h~kr--Rl~~~~~l~~i~r~LkpgG~l~ 341 (416)
.|.+++..+|+.+ +.|.++|+.++ .. +...+++|.|..| .||-.....+. +.++..+. +..+.+.+|+.++
T Consensus 271 ~A~~N~~~~g~~~~i~~~~~D~~~~-~~--~~~~~~~d~IvtN--PPYg~r~~~~~~l~~lY~~lg-~~lk~~~~g~~~~ 344 (702)
T PRK11783 271 AARKNARRAGVAELITFEVKDVADL-KN--PLPKGPTGLVISN--PPYGERLGEEPALIALYSQLG-RRLKQQFGGWNAA 344 (702)
T ss_pred HHHHHHHHcCCCcceEEEeCChhhc-cc--ccccCCCCEEEEC--CCCcCccCchHHHHHHHHHHH-HHHHHhCCCCeEE
Confidence 4555566678764 89999999886 21 1123579999998 56533211111 11222332 2333344999998
Q ss_pred EEeCcHHHHHH
Q 014919 342 LQSDIEEVMLR 352 (416)
Q Consensus 342 l~tD~~~~~~~ 352 (416)
+.|.+..+...
T Consensus 345 llt~~~~l~~~ 355 (702)
T PRK11783 345 LFSSSPELLSC 355 (702)
T ss_pred EEeCCHHHHHH
Confidence 88877765443
No 208
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.63 E-value=8.9e-05 Score=67.31 Aligned_cols=107 Identities=18% Similarity=0.187 Sum_probs=65.9
Q ss_pred CCCeEEEEeccccHHHHHHHHhC-CCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhh-----hhhhhccCCCceeEE
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLELVTHCRDSLQLSGITNGYFIATNATST-----FRSIVASYPGKLILV 303 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~-p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l-----~~~~~~~~~~s~D~v 303 (416)
+...+||+||++|.++..+.++. +...++|+|+... ...+++.++++|..+. +...++.....+|+|
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-------~~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~~dlv 95 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-------DPLQNVSFIQGDITNPENIKDIRKLLPESGEKFDLV 95 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-------GS-TTEEBTTGGGEEEEHSHHGGGSHGTTTCSESEE
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc-------ccccceeeeecccchhhHHHhhhhhccccccCccee
Confidence 35899999999999999999986 6789999997432 2346788888887542 122221112689999
Q ss_pred EEECCCCCCCCc---c-hhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919 304 SIQCPNPDFNRP---E-HRWRMVQRSLVEAVSDLLVHDGKVFLQS 344 (416)
Q Consensus 304 ~~~fpdpw~k~~---h-~krRl~~~~~l~~i~r~LkpgG~l~l~t 344 (416)
+.--..+....+ + ...++. ...+..+.+.|+|||.+++++
T Consensus 96 ~~D~~~~~~g~~~~d~~~~~~l~-~~~l~~a~~~L~~gG~~v~K~ 139 (181)
T PF01728_consen 96 LSDMAPNVSGDRNIDEFISIRLI-LSQLLLALELLKPGGTFVIKV 139 (181)
T ss_dssp EE-------SSHHSSHHHHHHHH-HHHHHHHHHHHCTTEEEEEEE
T ss_pred ccccccCCCCchhhHHHHHHHHH-HHHHHHHHhhhcCCCEEEEEe
Confidence 865321211110 1 111222 244556778899999988864
No 209
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.63 E-value=0.0005 Score=64.38 Aligned_cols=115 Identities=22% Similarity=0.182 Sum_probs=79.6
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHH-H---HHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCc-eeEEEE
Q 014919 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVT-H---CRDSLQLSGITNGYFIATNATSTFRSIVASYPGK-LILVSI 305 (416)
Q Consensus 231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~-~---a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s-~D~v~~ 305 (416)
..+++|||+|.|.=++.||-.+|+.+|+-+|... + -..-.++.+++|++++++.++++-. ... +|.|++
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~------~~~~~D~vts 141 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQ------EKKQYDVVTS 141 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhccc------ccccCcEEEe
Confidence 4789999999999999999999999999999532 1 1222346799999999999998721 123 999986
Q ss_pred ECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE--eCcHHHHHHHHHHHHhCCCC
Q 014919 306 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ--SDIEEVMLRMKQQFLEYGKG 363 (416)
Q Consensus 306 ~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~--tD~~~~~~~~~~~~~~~~~~ 363 (416)
--.-+. ..+++-+...||+||.+..- .-..++..+........++.
T Consensus 142 RAva~L------------~~l~e~~~pllk~~g~~~~~k~~~~~~e~~e~~~a~~~~~~~ 189 (215)
T COG0357 142 RAVASL------------NVLLELCLPLLKVGGGFLAYKGLAGKDELPEAEKAILPLGGQ 189 (215)
T ss_pred ehccch------------HHHHHHHHHhcccCCcchhhhHHhhhhhHHHHHHHHHhhcCc
Confidence 522111 36788889999999886421 22233444444444444444
No 210
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=97.63 E-value=0.00019 Score=74.53 Aligned_cols=99 Identities=14% Similarity=0.224 Sum_probs=63.9
Q ss_pred CCeEEEEeccccHHHHHHHHh----CCCCeEEEEchHHHHH----HHHHHhCC-CcEEEEEcChhhhhhhhhccCCCcee
Q 014919 231 QPLVVDIGSGNGLFLLGMARK----RKDLNFLGLELVTHCR----DSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLI 301 (416)
Q Consensus 231 ~~~vLDIGCG~G~~~~~lA~~----~p~~~~iGvD~~~~a~----~~a~~~~l-~nv~f~~~Da~~l~~~~~~~~~~s~D 301 (416)
..+|+|||||+|-+....+++ ....++++||-+..|. ++++.++. ++|+++++|++++ . .+..+|
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v-~-----lpekvD 260 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREV-E-----LPEKVD 260 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTS-C-----HSS-EE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCC-C-----CCCcee
Confidence 478999999999997655443 3457999999644332 22356676 5699999999987 2 256899
Q ss_pred EEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEE
Q 014919 302 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVF 341 (416)
Q Consensus 302 ~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~ 341 (416)
.|..=.-..+ .. + ...++.|....|.|||||.++
T Consensus 261 IIVSElLGsf-g~--n---El~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 261 IIVSELLGSF-GD--N---ELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp EEEE---BTT-BT--T---TSHHHHHHHGGGGEEEEEEEE
T ss_pred EEEEeccCCc-cc--c---ccCHHHHHHHHhhcCCCCEEe
Confidence 9965321111 11 0 134678999999999999743
No 211
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=97.62 E-value=0.00029 Score=69.03 Aligned_cols=96 Identities=19% Similarity=0.305 Sum_probs=66.1
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchH---HHHHHHHHHhCC-CcEEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELV---THCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVSI 305 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~---~~a~~~a~~~~l-~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~ 305 (416)
.+.+|||+|||+|....-.|++ ...++++||.+ +.|++..+.+.+ +++.++.+-++++ . .++.+|.+..
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqA-GA~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdi-----e-LPEk~DviIS 249 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQA-GAKKVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDI-----E-LPEKVDVIIS 249 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHh-CcceEEEEehhHHHHHHHHHHhcCCccceEEEccCccccc-----c-CchhccEEEe
Confidence 3689999999999888776665 45689999954 455555555554 4699999999887 2 3678998864
Q ss_pred ECCCCCCCCcchhhhhhhHHHHHH---HHhhccCCcEEE
Q 014919 306 QCPNPDFNRPEHRWRMVQRSLVEA---VSDLLVHDGKVF 341 (416)
Q Consensus 306 ~fpdpw~k~~h~krRl~~~~~l~~---i~r~LkpgG~l~ 341 (416)
.|.-- -+++++.|+. .++.|||.|..+
T Consensus 250 ---EPMG~------mL~NERMLEsYl~Ark~l~P~GkMf 279 (517)
T KOG1500|consen 250 ---EPMGY------MLVNERMLESYLHARKWLKPNGKMF 279 (517)
T ss_pred ---ccchh------hhhhHHHHHHHHHHHhhcCCCCccc
Confidence 23210 1234444433 469999999755
No 212
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.58 E-value=0.00012 Score=63.78 Aligned_cols=74 Identities=15% Similarity=0.230 Sum_probs=54.0
Q ss_pred cCCCCCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHh----CCCcEEEEEcChhhhhhhhhccCCCcee
Q 014919 226 YHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS----GITNGYFIATNATSTFRSIVASYPGKLI 301 (416)
Q Consensus 226 f~~~~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~----~l~nv~f~~~Da~~l~~~~~~~~~~s~D 301 (416)
+++-++..++|+|||.|......+ .+....++|+|+...|++.+.++ .+ ++.++++|+..+. +..+.||
T Consensus 44 ygdiEgkkl~DLgcgcGmLs~a~s-m~~~e~vlGfDIdpeALEIf~rNaeEfEv-qidlLqcdildle-----~~~g~fD 116 (185)
T KOG3420|consen 44 YGDIEGKKLKDLGCGCGMLSIAFS-MPKNESVLGFDIDPEALEIFTRNAEEFEV-QIDLLQCDILDLE-----LKGGIFD 116 (185)
T ss_pred hccccCcchhhhcCchhhhHHHhh-cCCCceEEeeecCHHHHHHHhhchHHhhh-hhheeeeeccchh-----ccCCeEe
Confidence 444468899999999999885444 33456899999977777655433 22 5789999998762 1358899
Q ss_pred EEEEE
Q 014919 302 LVSIQ 306 (416)
Q Consensus 302 ~v~~~ 306 (416)
...+|
T Consensus 117 taviN 121 (185)
T KOG3420|consen 117 TAVIN 121 (185)
T ss_pred eEEec
Confidence 99987
No 213
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=97.57 E-value=0.00027 Score=69.44 Aligned_cols=76 Identities=11% Similarity=0.040 Sum_probs=56.9
Q ss_pred CCCeEEEEeccccHHHHHHHHhCC-CCeEEEEchHHHHHHHHHHh--CCCcEEEEEcChhhhhhhhhccCCCceeEEEEE
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLELVTHCRDSLQLS--GITNGYFIATNATSTFRSIVASYPGKLILVSIQ 306 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p-~~~~iGvD~~~~a~~~a~~~--~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~ 306 (416)
.+..+||.+||.|.++..+++..| +.+++|+|....|++.+++. ..++++++++|..++. ..++..-.++|.|++.
T Consensus 19 pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~-~~l~~~~~~vDgIl~D 97 (296)
T PRK00050 19 PDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLK-EVLAEGLGKVDGILLD 97 (296)
T ss_pred CCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHH-HHHHcCCCccCEEEEC
Confidence 357999999999999999999986 78999999877766665432 1458999999999873 3332101278888643
No 214
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=97.56 E-value=3.9e-05 Score=73.71 Aligned_cols=96 Identities=17% Similarity=0.152 Sum_probs=67.1
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCCC
Q 014919 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNP 310 (416)
Q Consensus 231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdp 310 (416)
+..++|+|||+|..+. .+|.+.++|.|++...+.-+++.+.. ....+|+..+ |+.+.+||.....-.-.
T Consensus 46 gsv~~d~gCGngky~~----~~p~~~~ig~D~c~~l~~~ak~~~~~--~~~~ad~l~~-----p~~~~s~d~~lsiavih 114 (293)
T KOG1331|consen 46 GSVGLDVGCGNGKYLG----VNPLCLIIGCDLCTGLLGGAKRSGGD--NVCRADALKL-----PFREESFDAALSIAVIH 114 (293)
T ss_pred cceeeecccCCcccCc----CCCcceeeecchhhhhccccccCCCc--eeehhhhhcC-----CCCCCccccchhhhhhh
Confidence 7899999999998876 35899999999876555444444433 5678899887 54678888764322222
Q ss_pred CCCCcchhhhhhhHHHHHHHHhhccCCcEEEE
Q 014919 311 DFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 342 (416)
Q Consensus 311 w~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l 342 (416)
|...+ -|| ...++++.|+|+|||...+
T Consensus 115 hlsT~--~RR---~~~l~e~~r~lrpgg~~lv 141 (293)
T KOG1331|consen 115 HLSTR--ERR---ERALEELLRVLRPGGNALV 141 (293)
T ss_pred hhhhH--HHH---HHHHHHHHHHhcCCCceEE
Confidence 32222 122 4789999999999998655
No 215
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=97.55 E-value=0.0006 Score=60.79 Aligned_cols=126 Identities=19% Similarity=0.218 Sum_probs=81.7
Q ss_pred CCCCcccccccCccccccccccCCCCCCeEEEEeccccHHHHHHHHh-CCCCeEEEEchHHHHHHHHHHhCCCcEEEEEc
Q 014919 205 MLPGVSALDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLELVTHCRDSLQLSGITNGYFIAT 283 (416)
Q Consensus 205 ~lPg~~aL~~~~p~~~~~~~~f~~~~~~~vLDIGCG~G~~~~~lA~~-~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~ 283 (416)
.+|...-+.+.+-..++|. .+--|||+|.|||.++.++.++ .++..++++|.+..-..... +..+.+.++.+
T Consensus 29 I~PsSs~lA~~M~s~I~pe------sglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~-~~~p~~~ii~g 101 (194)
T COG3963 29 ILPSSSILARKMASVIDPE------SGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLN-QLYPGVNIING 101 (194)
T ss_pred ecCCcHHHHHHHHhccCcc------cCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHH-HhCCCcccccc
Confidence 4565544443332234442 2456999999999999987654 67889999998655443332 22456779999
Q ss_pred Chhhhhhhhh-ccCCCceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919 284 NATSTFRSIV-ASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 344 (416)
Q Consensus 284 Da~~l~~~~~-~~~~~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t 344 (416)
|+.++ +..+ ......||.|++..|---+ + .++|+ +.|+.+...|.+||.++.-|
T Consensus 102 da~~l-~~~l~e~~gq~~D~viS~lPll~~--P-~~~~i---aile~~~~rl~~gg~lvqft 156 (194)
T COG3963 102 DAFDL-RTTLGEHKGQFFDSVISGLPLLNF--P-MHRRI---AILESLLYRLPAGGPLVQFT 156 (194)
T ss_pred chhhH-HHHHhhcCCCeeeeEEeccccccC--c-HHHHH---HHHHHHHHhcCCCCeEEEEE
Confidence 99887 3222 1245679999765432111 1 12233 88999999999999887644
No 216
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.49 E-value=0.0015 Score=54.24 Aligned_cols=100 Identities=18% Similarity=0.206 Sum_probs=63.2
Q ss_pred EEEEeccccHHHHHHHHhCCC-CeEEEEchHHHHHHHHHHhC--CC--cEEEEEcChhhhhhhhhccCC-CceeEEEEEC
Q 014919 234 VVDIGSGNGLFLLGMARKRKD-LNFLGLELVTHCRDSLQLSG--IT--NGYFIATNATSTFRSIVASYP-GKLILVSIQC 307 (416)
Q Consensus 234 vLDIGCG~G~~~~~lA~~~p~-~~~iGvD~~~~a~~~a~~~~--l~--nv~f~~~Da~~l~~~~~~~~~-~s~D~v~~~f 307 (416)
++|+|||+|... .+++..+. ..++|+|.+..+........ .. ++.+...|.... .+++.. ..+|.+ ...
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~d~~-~~~ 126 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGG---VLPFEDSASFDLV-ISL 126 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccC---CCCCCCCCceeEE-eee
Confidence 999999999977 44444443 48999997654444322111 11 168888887652 013334 479998 443
Q ss_pred CCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCc
Q 014919 308 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI 346 (416)
Q Consensus 308 pdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~ 346 (416)
...+... ....+.++.+.|+|+|.+.+....
T Consensus 127 ~~~~~~~--------~~~~~~~~~~~l~~~g~~~~~~~~ 157 (257)
T COG0500 127 LVLHLLP--------PAKALRELLRVLKPGGRLVLSDLL 157 (257)
T ss_pred eehhcCC--------HHHHHHHHHHhcCCCcEEEEEecc
Confidence 2222111 247899999999999999887543
No 217
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=97.49 E-value=0.00025 Score=70.02 Aligned_cols=126 Identities=17% Similarity=0.187 Sum_probs=75.0
Q ss_pred CCCeEEEEeccccHHHHHHHHh-------CCCCeEEEEchHHHHHHHH----HHhC--CCcEEEEEcChhhhhhhhhccC
Q 014919 230 AQPLVVDIGSGNGLFLLGMARK-------RKDLNFLGLELVTHCRDSL----QLSG--ITNGYFIATNATSTFRSIVASY 296 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~-------~p~~~~iGvD~~~~a~~~a----~~~~--l~nv~f~~~Da~~l~~~~~~~~ 296 (416)
.+.+|+|-.||+|.|+.++.+. .+..+++|+|+...+...+ .-++ ..+..+.++|.... + ... .
T Consensus 46 ~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~-~-~~~-~ 122 (311)
T PF02384_consen 46 KGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLEN-D-KFI-K 122 (311)
T ss_dssp TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTS-H-SCT-S
T ss_pred ccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccc-c-ccc-c
Confidence 3568999999999999998874 4788999999755444332 2233 23456888887543 1 110 1
Q ss_pred CCceeEEEEECCCCCCCC--cchh-------------hhhhhHHHHHHHHhhccCCcEEEEEeCcHHH-----HHHHHHH
Q 014919 297 PGKLILVSIQCPNPDFNR--PEHR-------------WRMVQRSLVEAVSDLLVHDGKVFLQSDIEEV-----MLRMKQQ 356 (416)
Q Consensus 297 ~~s~D~v~~~fpdpw~k~--~h~k-------------rRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~-----~~~~~~~ 356 (416)
...||.|..| .||-.. .+.+ ++-..-.|+..+.+.|++||++.+......+ ...+++.
T Consensus 123 ~~~~D~ii~N--PPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~~L~~~~~~~~iR~~ 200 (311)
T PF02384_consen 123 NQKFDVIIGN--PPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNGFLFSSSSEKKIRKY 200 (311)
T ss_dssp T--EEEEEEE----CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHHHHHGSTHHHHHHHH
T ss_pred ccccccccCC--CCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecchhhhccchHHHHHHH
Confidence 4689999999 455322 1100 0111236899999999999998776544322 3345555
Q ss_pred HHhC
Q 014919 357 FLEY 360 (416)
Q Consensus 357 ~~~~ 360 (416)
+.+.
T Consensus 201 ll~~ 204 (311)
T PF02384_consen 201 LLEN 204 (311)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 5443
No 218
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.49 E-value=0.00056 Score=72.68 Aligned_cols=81 Identities=16% Similarity=0.157 Sum_probs=50.8
Q ss_pred CCeEEEEeccccHHHHHHHHhCC--------CCeEEEEchHHHHHHHHHH----hCCCcEEEEEcChhhhhhhhhccCCC
Q 014919 231 QPLVVDIGSGNGLFLLGMARKRK--------DLNFLGLELVTHCRDSLQL----SGITNGYFIATNATSTFRSIVASYPG 298 (416)
Q Consensus 231 ~~~vLDIGCG~G~~~~~lA~~~p--------~~~~iGvD~~~~a~~~a~~----~~l~nv~f~~~Da~~l~~~~~~~~~~ 298 (416)
..+|||.+||+|.++..++...+ +.+++|+|+...+...+.. .+.-++.+.+.|.........+...+
T Consensus 32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~~ 111 (524)
T TIGR02987 32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYLD 111 (524)
T ss_pred ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeecccccccccccccccC
Confidence 46899999999999999988764 2678999986666554432 22112444445433210000010135
Q ss_pred ceeEEEEECCCCCCC
Q 014919 299 KLILVSIQCPNPDFN 313 (416)
Q Consensus 299 s~D~v~~~fpdpw~k 313 (416)
.||.|..| .||-+
T Consensus 112 ~fD~IIgN--PPy~~ 124 (524)
T TIGR02987 112 LFDIVITN--PPYGR 124 (524)
T ss_pred cccEEEeC--CCccc
Confidence 79999999 77754
No 219
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=0.00063 Score=62.78 Aligned_cols=95 Identities=17% Similarity=0.243 Sum_probs=68.8
Q ss_pred CCeEEEEeccccHHHHHHHHh--CCCCeEEEEch----HHHHHHHHHH----------hCCCcEEEEEcChhhhhhhhhc
Q 014919 231 QPLVVDIGSGNGLFLLGMARK--RKDLNFLGLEL----VTHCRDSLQL----------SGITNGYFIATNATSTFRSIVA 294 (416)
Q Consensus 231 ~~~vLDIGCG~G~~~~~lA~~--~p~~~~iGvD~----~~~a~~~a~~----------~~l~nv~f~~~Da~~l~~~~~~ 294 (416)
+...||+|.|+|.++..+|.. .+..+.+|||. ++.+.+++.. ....++.++.+|.....+
T Consensus 83 G~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~---- 158 (237)
T KOG1661|consen 83 GASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYA---- 158 (237)
T ss_pred CcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCC----
Confidence 678999999999999998865 34555699994 4444444322 123479999999988732
Q ss_pred cCCCceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919 295 SYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 344 (416)
Q Consensus 295 ~~~~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t 344 (416)
+...+|.|++--..+ +..+++...|+|||.+++--
T Consensus 159 -e~a~YDaIhvGAaa~--------------~~pq~l~dqL~~gGrllip~ 193 (237)
T KOG1661|consen 159 -EQAPYDAIHVGAAAS--------------ELPQELLDQLKPGGRLLIPV 193 (237)
T ss_pred -ccCCcceEEEccCcc--------------ccHHHHHHhhccCCeEEEee
Confidence 467899999874333 45677888999999998843
No 220
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=97.45 E-value=0.002 Score=58.95 Aligned_cols=107 Identities=13% Similarity=0.193 Sum_probs=73.0
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHH----HHHhCC-CcEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDS----LQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVS 304 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~----a~~~~l-~nv~f~~~Da~~l~~~~~~~~~~s~D~v~ 304 (416)
++.++||+=+|+|..+++.+.+. ...++.||...+|.+. ++..++ .+.+++..|+...++..- ..+.||.||
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRG-A~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~--~~~~FDlVf 119 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRG-AARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLG--TREPFDLVF 119 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCC-CceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcC--CCCcccEEE
Confidence 47999999999999999988875 4589999976655444 334453 479999999997654321 223599998
Q ss_pred EECCCCCCCCcchhhhhhh-HHHHH--HHHhhccCCcEEEEEeCcH
Q 014919 305 IQCPNPDFNRPEHRWRMVQ-RSLVE--AVSDLLVHDGKVFLQSDIE 347 (416)
Q Consensus 305 ~~fpdpw~k~~h~krRl~~-~~~l~--~i~r~LkpgG~l~l~tD~~ 347 (416)
+ ||-+.+. +.+ ..-+. +-..+|+|+|.+++.++..
T Consensus 120 l---DPPy~~~-----l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~ 157 (187)
T COG0742 120 L---DPPYAKG-----LLDKELALLLLEENGWLKPGALIVVEHDKD 157 (187)
T ss_pred e---CCCCccc-----hhhHHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence 7 4533322 111 11122 2457899999999998754
No 221
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=97.45 E-value=0.00021 Score=70.00 Aligned_cols=103 Identities=17% Similarity=0.153 Sum_probs=67.7
Q ss_pred CCeEEEEeccccHHHHHHHHh----CC----CCeEEEEchHHHHHHHHHHh---------------------------C-
Q 014919 231 QPLVVDIGSGNGLFLLGMARK----RK----DLNFLGLELVTHCRDSLQLS---------------------------G- 274 (416)
Q Consensus 231 ~~~vLDIGCG~G~~~~~lA~~----~p----~~~~iGvD~~~~a~~~a~~~---------------------------~- 274 (416)
.-+|+..||.+|.-.-.||-. .+ +.+++|+|++..++++|++. +
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 368999999999876555532 22 46899999877776665421 0
Q ss_pred ------C-CcEEEEEcChhhhhhhhhccCCCceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919 275 ------I-TNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 343 (416)
Q Consensus 275 ------l-~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~ 343 (416)
+ ..|+|.+.|+.+. .+| ..+.||.|++...-.++... .+...++.+++.|+|||.|++.
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~---~~~-~~~~fD~I~cRNvliyF~~~------~~~~vl~~l~~~L~pgG~L~lG 261 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAK---QWA-VPGPFDAIFCRNVMIYFDKT------TQERILRRFVPLLKPDGLLFAG 261 (287)
T ss_pred EEEChHHHccCEEEcccCCCC---CCc-cCCCcceeeHhhHHhcCCHH------HHHHHHHHHHHHhCCCcEEEEe
Confidence 1 2467777777552 111 24789999764222222111 2348899999999999999885
No 222
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=97.44 E-value=0.0016 Score=63.73 Aligned_cols=112 Identities=18% Similarity=0.258 Sum_probs=81.9
Q ss_pred CCCeEEEEeccccHHHHHHHHhCC-CCeEEEEchH----HHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLELV----THCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS 304 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p-~~~~iGvD~~----~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~ 304 (416)
.+..|||++++.|.-+..+|+..+ ...+++.|++ ....+++++.|..|+..+..|+....+... ...||.|.
T Consensus 85 ~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~---~~~fd~Vl 161 (283)
T PF01189_consen 85 PGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKP---ESKFDRVL 161 (283)
T ss_dssp TTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHH---TTTEEEEE
T ss_pred ccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeecccccccccc---ccccchhh
Confidence 467899999999999999999876 6799999964 334455677899999999999988733222 44699998
Q ss_pred EECCCC----CCCCcchhhh----------hhhHHHHHHHHhhc----cCCcEEEEEe
Q 014919 305 IQCPNP----DFNRPEHRWR----------MVQRSLVEAVSDLL----VHDGKVFLQS 344 (416)
Q Consensus 305 ~~fpdp----w~k~~h~krR----------l~~~~~l~~i~r~L----kpgG~l~l~t 344 (416)
+--|=. |-+.+..|++ -+|.++|+...+.| ||||+++.+|
T Consensus 162 vDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsT 219 (283)
T PF01189_consen 162 VDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYST 219 (283)
T ss_dssp EECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEE
T ss_pred cCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEe
Confidence 863322 1112211221 13678999999999 9999999987
No 223
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.41 E-value=0.00041 Score=60.10 Aligned_cols=55 Identities=20% Similarity=0.338 Sum_probs=44.2
Q ss_pred eEEEEeccccHHHHHHHHhCCCCeEEEEchHHH----HHHHHHHhCCCcEEEEEcChhh
Q 014919 233 LVVDIGSGNGLFLLGMARKRKDLNFLGLELVTH----CRDSLQLSGITNGYFIATNATS 287 (416)
Q Consensus 233 ~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~----a~~~a~~~~l~nv~f~~~Da~~ 287 (416)
++||||||.|.++..+++..|..+++++|.... ++++++.++++|+++++..+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence 489999999999999999999999999996443 3444555677889988877654
No 224
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.40 E-value=0.0016 Score=64.78 Aligned_cols=110 Identities=8% Similarity=0.061 Sum_probs=68.5
Q ss_pred CCeEEEEeccccHHHHHHHHhC----CCCeEEEEchHHHHHHHHHH----hCCCcEEE--EEcChhhhhhhhhcc--CCC
Q 014919 231 QPLVVDIGSGNGLFLLGMARKR----KDLNFLGLELVTHCRDSLQL----SGITNGYF--IATNATSTFRSIVAS--YPG 298 (416)
Q Consensus 231 ~~~vLDIGCG~G~~~~~lA~~~----p~~~~iGvD~~~~a~~~a~~----~~l~nv~f--~~~Da~~l~~~~~~~--~~~ 298 (416)
+..++|+|||+|.-+..|.+.. ....|++||++..+++.+.+ ...+++.+ +++|..+.+. +++. ...
T Consensus 77 ~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~-~l~~~~~~~ 155 (319)
T TIGR03439 77 GSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLA-WLKRPENRS 155 (319)
T ss_pred CCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHh-hcccccccC
Confidence 5689999999999877665543 35789999997766655432 34566655 8898877532 2221 112
Q ss_pred ceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHh-hccCCcEEEEEeCc
Q 014919 299 KLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSD-LLVHDGKVFLQSDI 346 (416)
Q Consensus 299 s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r-~LkpgG~l~l~tD~ 346 (416)
...++++. -.-+.+-.+ .-...||+.+++ .|+||+.|++..|-
T Consensus 156 ~~r~~~fl--GSsiGNf~~---~ea~~fL~~~~~~~l~~~d~lLiG~D~ 199 (319)
T TIGR03439 156 RPTTILWL--GSSIGNFSR---PEAAAFLAGFLATALSPSDSFLIGLDG 199 (319)
T ss_pred CccEEEEe--CccccCCCH---HHHHHHHHHHHHhhCCCCCEEEEecCC
Confidence 23333321 111111111 112489999999 99999999997663
No 225
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=97.39 E-value=0.00055 Score=63.84 Aligned_cols=102 Identities=17% Similarity=0.124 Sum_probs=64.0
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHh-C---CCcEEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS-G---ITNGYFIATNATSTFRSIVASYPGKLILVSI 305 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~-~---l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~ 305 (416)
...+.||.|+|-|+.+..+...+ -..|--||.+++-++.+++. + ..-..+.+....++. | .++.+|+||+
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~-f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~----P-~~~~YDlIW~ 128 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPV-FDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFT----P-EEGKYDLIWI 128 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG---------TT-EEEEEE
T ss_pred CcceEEecccccchhHHHHHHHh-cCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhcc----C-CCCcEeEEEe
Confidence 35789999999999998765432 23677777666666665532 2 123677777777662 3 3579999999
Q ss_pred ECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919 306 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 343 (416)
Q Consensus 306 ~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~ 343 (416)
++.-.+..+. .+ -+||+++...|+|+|.++++
T Consensus 129 QW~lghLTD~----dl--v~fL~RCk~~L~~~G~IvvK 160 (218)
T PF05891_consen 129 QWCLGHLTDE----DL--VAFLKRCKQALKPNGVIVVK 160 (218)
T ss_dssp ES-GGGS-HH----HH--HHHHHHHHHHEEEEEEEEEE
T ss_pred hHhhccCCHH----HH--HHHHHHHHHhCcCCcEEEEE
Confidence 9654432111 12 28999999999999999996
No 226
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.37 E-value=0.00053 Score=65.86 Aligned_cols=71 Identities=17% Similarity=0.131 Sum_probs=54.2
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHh--CCCcEEEEEcChhhhhhhhhccCCC-ceeEEEEEC
Q 014919 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS--GITNGYFIATNATSTFRSIVASYPG-KLILVSIQC 307 (416)
Q Consensus 231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~--~l~nv~f~~~Da~~l~~~~~~~~~~-s~D~v~~~f 307 (416)
+..|||||+|.|.++..|+++. ..++++|+........++. ...|++++++|+... + + +.. ..+.|+.|-
T Consensus 31 ~d~VlEIGpG~GaLT~~Ll~~~--~~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~-d--~--~~l~~~~~vVaNl 103 (259)
T COG0030 31 GDNVLEIGPGLGALTEPLLERA--ARVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKF-D--F--PSLAQPYKVVANL 103 (259)
T ss_pred CCeEEEECCCCCHHHHHHHhhc--CeEEEEEeCHHHHHHHHHhcccccceEEEeCchhcC-c--c--hhhcCCCEEEEcC
Confidence 6899999999999999999984 4699999866555544433 357999999999886 1 2 221 578888985
Q ss_pred C
Q 014919 308 P 308 (416)
Q Consensus 308 p 308 (416)
|
T Consensus 104 P 104 (259)
T COG0030 104 P 104 (259)
T ss_pred C
Confidence 4
No 227
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=97.36 E-value=0.00028 Score=65.83 Aligned_cols=100 Identities=11% Similarity=-0.009 Sum_probs=74.3
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCc--EEEEEcChhhhhhhhhccCCCceeEEEEEC
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITN--GYFIATNATSTFRSIVASYPGKLILVSIQC 307 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~n--v~f~~~Da~~l~~~~~~~~~~s~D~v~~~f 307 (416)
..+.++||||+-|.....|-... --+++-+|.+..+++.++...-+. +....+|-+.+ ++.++++|+|....
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~-vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~L-----df~ens~DLiisSl 145 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEG-VEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFL-----DFKENSVDLIISSL 145 (325)
T ss_pred hCcceeecccchhhhhHHHHhcc-hhheeeeecchHHHHHhhccCCCceEEEEEecchhcc-----cccccchhhhhhhh
Confidence 36889999999999999888775 347899998877777665432222 45566776555 55789999998776
Q ss_pred CCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919 308 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 343 (416)
Q Consensus 308 pdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~ 343 (416)
+-.|.... |..+..++..|||+|.|+-+
T Consensus 146 slHW~NdL--------Pg~m~~ck~~lKPDg~Fias 173 (325)
T KOG2940|consen 146 SLHWTNDL--------PGSMIQCKLALKPDGLFIAS 173 (325)
T ss_pred hhhhhccC--------chHHHHHHHhcCCCccchhH
Confidence 67774221 57788999999999998754
No 228
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=97.22 E-value=0.002 Score=64.30 Aligned_cols=97 Identities=15% Similarity=0.236 Sum_probs=77.2
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHH----HHHHHHhCCCc-EEEEEcChhhhhhhhhccCCCceeEEE
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHC----RDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVS 304 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a----~~~a~~~~l~n-v~f~~~Da~~l~~~~~~~~~~s~D~v~ 304 (416)
++.+|||.=+|-|.|++.+|+...-. ++++|+...| .++++.++..+ +..+++|+.++.. ..+.+|.|+
T Consensus 188 ~GE~V~DmFAGVGpfsi~~Ak~g~~~-V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~-----~~~~aDrIi 261 (341)
T COG2520 188 EGETVLDMFAGVGPFSIPIAKKGRPK-VYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAP-----ELGVADRII 261 (341)
T ss_pred CCCEEEEccCCcccchhhhhhcCCce-EEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhh-----ccccCCEEE
Confidence 48999999999999999999875433 9999986554 44556677877 9999999999832 227899999
Q ss_pred EECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919 305 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 344 (416)
Q Consensus 305 ~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t 344 (416)
++.|.. . ..|+....+.|++||.+++-+
T Consensus 262 m~~p~~----a--------~~fl~~A~~~~k~~g~iHyy~ 289 (341)
T COG2520 262 MGLPKS----A--------HEFLPLALELLKDGGIIHYYE 289 (341)
T ss_pred eCCCCc----c--------hhhHHHHHHHhhcCcEEEEEe
Confidence 986532 2 378999999999999998853
No 229
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.22 E-value=0.0041 Score=57.65 Aligned_cols=102 Identities=17% Similarity=0.187 Sum_probs=69.2
Q ss_pred CCCeEEEEeccccHHHHHHHHhCC-CCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhh-----hhhhhccCCCceeEE
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLELVTHCRDSLQLSGITNGYFIATNATST-----FRSIVASYPGKLILV 303 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p-~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l-----~~~~~~~~~~s~D~v 303 (416)
.+..|+|||+-.|.++..+++... ...++|+|+..- ....+|.++++|+..- +.+.+ ....+|.|
T Consensus 45 ~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~-------~~~~~V~~iq~d~~~~~~~~~l~~~l--~~~~~DvV 115 (205)
T COG0293 45 PGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPM-------KPIPGVIFLQGDITDEDTLEKLLEAL--GGAPVDVV 115 (205)
T ss_pred CCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccc-------ccCCCceEEeeeccCccHHHHHHHHc--CCCCcceE
Confidence 379999999999999999998754 456999998542 2346799999999752 11222 23447888
Q ss_pred EEECCCCCCCC-----cchhhhhhh--HHHHHHHHhhccCCcEEEEEe
Q 014919 304 SIQCPNPDFNR-----PEHRWRMVQ--RSLVEAVSDLLVHDGKVFLQS 344 (416)
Q Consensus 304 ~~~fpdpw~k~-----~h~krRl~~--~~~l~~i~r~LkpgG~l~l~t 344 (416)
.. |+-++. .+|- |.++ ...++-...+|+|||.+....
T Consensus 116 ~s---D~ap~~~g~~~~Dh~-r~~~L~~~a~~~a~~vL~~~G~fv~K~ 159 (205)
T COG0293 116 LS---DMAPNTSGNRSVDHA-RSMYLCELALEFALEVLKPGGSFVAKV 159 (205)
T ss_pred Ee---cCCCCcCCCccccHH-HHHHHHHHHHHHHHHeeCCCCeEEEEE
Confidence 64 333322 1222 2222 455777788999999998863
No 230
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=97.19 E-value=0.003 Score=63.68 Aligned_cols=138 Identities=14% Similarity=0.162 Sum_probs=94.5
Q ss_pred EeeeecccCCCCcccccccCc----cccccccccCCCCCCeEEEEeccccHHHHHHHHhCCC------------------
Q 014919 197 VWEFLKGRMLPGVSALDRAFP----FDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKD------------------ 254 (416)
Q Consensus 197 ~le~l~gr~lPg~~aL~~~~p----~~~~~~~~f~~~~~~~vLDIGCG~G~~~~~lA~~~p~------------------ 254 (416)
+|.....|...+...|.+.+- ...+|.. ...++|==||+|.++++.|...++
T Consensus 160 sLhkRGyR~~~g~ApLketLAaAil~lagw~~------~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~ 233 (381)
T COG0116 160 SLHKRGYRVYDGPAPLKETLAAAILLLAGWKP------DEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFD 233 (381)
T ss_pred chhhccccccCCCCCchHHHHHHHHHHcCCCC------CCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhcc
Confidence 566666666666666654431 2234522 256889999999999999987652
Q ss_pred --------------C-------eEEEEch----HHHHHHHHHHhCCC-cEEEEEcChhhhhhhhhccCCCceeEEEEECC
Q 014919 255 --------------L-------NFLGLEL----VTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVSIQCP 308 (416)
Q Consensus 255 --------------~-------~~iGvD~----~~~a~~~a~~~~l~-nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fp 308 (416)
. .++|+|+ ++.|..++++.|+. -|.|.++|+..+ .+ +-+++|.|.+|
T Consensus 234 ~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l-~~----~~~~~gvvI~N-- 306 (381)
T COG0116 234 KDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDL-KE----PLEEYGVVISN-- 306 (381)
T ss_pred HHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhC-CC----CCCcCCEEEeC--
Confidence 2 2889996 55667777778876 499999999988 21 12689999998
Q ss_pred CCCCCCcchhh--hhhhHHHHHHHHhhccCCcEEEEEeCcH
Q 014919 309 NPDFNRPEHRW--RMVQRSLVEAVSDLLVHDGKVFLQSDIE 347 (416)
Q Consensus 309 dpw~k~~h~kr--Rl~~~~~l~~i~r~LkpgG~l~l~tD~~ 347 (416)
.||=..-..+. .-+++.|.+.+.+.++--+.++|.|+..
T Consensus 307 PPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt~e~ 347 (381)
T COG0116 307 PPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVFTTSED 347 (381)
T ss_pred CCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEEEccHH
Confidence 55532222221 1135788889999999989999987643
No 231
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=97.17 E-value=0.00038 Score=64.41 Aligned_cols=102 Identities=16% Similarity=0.144 Sum_probs=61.3
Q ss_pred CCeEEEEeccccHHHHHHHHh--------CC-CCeEEEEchHHHHHHHHHHh-----------------------C----
Q 014919 231 QPLVVDIGSGNGLFLLGMARK--------RK-DLNFLGLELVTHCRDSLQLS-----------------------G---- 274 (416)
Q Consensus 231 ~~~vLDIGCG~G~~~~~lA~~--------~p-~~~~iGvD~~~~a~~~a~~~-----------------------~---- 274 (416)
.-+|+..||++|.-.-.||-. .+ +.+++|.|++..++++|++. +
T Consensus 32 ~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~~ 111 (196)
T PF01739_consen 32 PLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGYR 111 (196)
T ss_dssp -EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCTT
T ss_pred CeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCcee
Confidence 568999999999876555532 12 47999999877766655310 1
Q ss_pred -----CCcEEEEEcChhhhhhhhhccCCCceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919 275 -----ITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 343 (416)
Q Consensus 275 -----l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~ 343 (416)
.++|+|.+.|..+. . + ..+.+|+|++--.--++... .+...++.+++.|+|||.|++.
T Consensus 112 v~~~lr~~V~F~~~NL~~~-~---~-~~~~fD~I~CRNVlIYF~~~------~~~~vl~~l~~~L~pgG~L~lG 174 (196)
T PF01739_consen 112 VKPELRKMVRFRRHNLLDP-D---P-PFGRFDLIFCRNVLIYFDPE------TQQRVLRRLHRSLKPGGYLFLG 174 (196)
T ss_dssp E-HHHHTTEEEEE--TT-S-----------EEEEEE-SSGGGS-HH------HHHHHHHHHGGGEEEEEEEEE-
T ss_pred EChHHcCceEEEecccCCC-C---c-ccCCccEEEecCEEEEeCHH------HHHHHHHHHHHHcCCCCEEEEe
Confidence 13588888888772 1 1 35789999875332222211 2358899999999999999995
No 232
>PRK00536 speE spermidine synthase; Provisional
Probab=97.12 E-value=0.005 Score=59.49 Aligned_cols=109 Identities=9% Similarity=-0.066 Sum_probs=73.0
Q ss_pred CCCCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHH--------hCCCcEEEEEcChhhhhhhhhccCCCc
Q 014919 228 DPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL--------SGITNGYFIATNATSTFRSIVASYPGK 299 (416)
Q Consensus 228 ~~~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~--------~~l~nv~f~~~Da~~l~~~~~~~~~~s 299 (416)
+++..+||=||-|.|..+.++.+. |. +++-||+.....+.+++ ..-++++++.. + .+ ...++
T Consensus 70 h~~pk~VLIiGGGDGg~~REvLkh-~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~----~-~~---~~~~~ 139 (262)
T PRK00536 70 KKELKEVLIVDGFDLELAHQLFKY-DT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ----L-LD---LDIKK 139 (262)
T ss_pred CCCCCeEEEEcCCchHHHHHHHCc-CC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh----h-hh---ccCCc
Confidence 446799999999999999999976 54 89999864433333222 12345776641 2 11 02478
Q ss_pred eeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcH----HHHHHHHHHHHh
Q 014919 300 LILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE----EVMLRMKQQFLE 359 (416)
Q Consensus 300 ~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~----~~~~~~~~~~~~ 359 (416)
||+|.+--.+ .++|.+.++++|+|||.+..++... +.+..+.+.+++
T Consensus 140 fDVIIvDs~~-------------~~~fy~~~~~~L~~~Gi~v~Qs~sp~~~~~~~~~i~~~l~~ 190 (262)
T PRK00536 140 YDLIICLQEP-------------DIHKIDGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNMGD 190 (262)
T ss_pred CCEEEEcCCC-------------ChHHHHHHHHhcCCCcEEEECCCCcccCHHHHHHHHHHHHh
Confidence 9999875221 1489999999999999999986543 334444555555
No 233
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=97.11 E-value=0.0031 Score=56.86 Aligned_cols=126 Identities=17% Similarity=0.143 Sum_probs=78.0
Q ss_pred EeccccHHHHHHHHhCC-CCeEEEEch--HH-------HHHHHHHHhCCCcEE-EEEcChhhhhhhhhccCCCceeEEEE
Q 014919 237 IGSGNGLFLLGMARKRK-DLNFLGLEL--VT-------HCRDSLQLSGITNGY-FIATNATSTFRSIVASYPGKLILVSI 305 (416)
Q Consensus 237 IGCG~G~~~~~lA~~~p-~~~~iGvD~--~~-------~a~~~a~~~~l~nv~-f~~~Da~~l~~~~~~~~~~s~D~v~~ 305 (416)
||=|+=.|+..||++++ ..++++.-. -. .+..+++...-.++. ....|+..+ .+.+......||.|++
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l-~~~~~~~~~~FDrIiF 81 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKL-HKHFRLKNQRFDRIIF 81 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcc-cccccccCCcCCEEEE
Confidence 67788888899999877 777777753 11 122222222112222 345688777 4433334678999999
Q ss_pred ECCCCCCCCcch-----hhhhhhHHHHHHHHhhccCCcEEEEEe-CcHHHHHHHHHHHH-hCCCC
Q 014919 306 QCPNPDFNRPEH-----RWRMVQRSLVEAVSDLLVHDGKVFLQS-DIEEVMLRMKQQFL-EYGKG 363 (416)
Q Consensus 306 ~fpdpw~k~~h~-----krRl~~~~~l~~i~r~LkpgG~l~l~t-D~~~~~~~~~~~~~-~~~~~ 363 (416)
|||-.--...+. +.|.+-..|++.+.++|+++|.+++.. +.++|-.|-++.+. +.++.
T Consensus 82 NFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~py~~W~i~~lA~~~gl~ 146 (166)
T PF10354_consen 82 NFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQPYDSWNIEELAAEAGLV 146 (166)
T ss_pred eCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCCccccHHHHHHhcCCE
Confidence 998553111111 223344699999999999999999863 44456666665554 44543
No 234
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.02 E-value=0.0066 Score=56.62 Aligned_cols=114 Identities=15% Similarity=0.265 Sum_probs=77.7
Q ss_pred EEEEeccccHHHHHHHHhCCCCeEEEEchH----HHHHHHHHHhCCC-cEEEEEcChhhhhhhhhccCCCc-eeEEEEEC
Q 014919 234 VVDIGSGNGLFLLGMARKRKDLNFLGLELV----THCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGK-LILVSIQC 307 (416)
Q Consensus 234 vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~----~~a~~~a~~~~l~-nv~f~~~Da~~l~~~~~~~~~~s-~D~v~~~f 307 (416)
|.||||-.|...+.|.++..-..++++|++ .+|.++.+..++. ++.+..+|..+.++ ++. +|.|.+--
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~------~~e~~d~ivIAG 74 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLK------PGEDVDTIVIAG 74 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--------GGG---EEEEEE
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccC------CCCCCCEEEEec
Confidence 689999999999999999888899999974 5566666677865 59999999876532 343 88887642
Q ss_pred CCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCCce
Q 014919 308 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKL 365 (416)
Q Consensus 308 pdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~~~ 365 (416)
. . -. ...++|+.....++..-.|+++.-.. ...+++.+.+++|.+.
T Consensus 75 M------G---G~-lI~~ILe~~~~~~~~~~~lILqP~~~--~~~LR~~L~~~gf~I~ 120 (205)
T PF04816_consen 75 M------G---GE-LIIEILEAGPEKLSSAKRLILQPNTH--AYELRRWLYENGFEII 120 (205)
T ss_dssp E----------HH-HHHHHHHHTGGGGTT--EEEEEESS---HHHHHHHHHHTTEEEE
T ss_pred C------C---HH-HHHHHHHhhHHHhccCCeEEEeCCCC--hHHHHHHHHHCCCEEE
Confidence 1 1 11 22477888878887777899986543 4467888999998754
No 235
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=96.93 E-value=0.0038 Score=58.21 Aligned_cols=100 Identities=14% Similarity=0.180 Sum_probs=53.9
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHH----H---HHH----HHHhC--CCcEEEEEcChhhh--hhhhhc
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTH----C---RDS----LQLSG--ITNGYFIATNATST--FRSIVA 294 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~----a---~~~----a~~~~--l~nv~f~~~Da~~l--~~~~~~ 294 (416)
...+.+|||||.|......|..++-...+|||+... | .+. ....+ ..++.+.++|..+. ....+
T Consensus 42 ~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~~~- 120 (205)
T PF08123_consen 42 PDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKDIW- 120 (205)
T ss_dssp TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHHHG-
T ss_pred CCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhhhh-
Confidence 368999999999999999998876666999996321 1 111 11223 34688999998653 11112
Q ss_pred cCCCceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEE
Q 014919 295 SYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 342 (416)
Q Consensus 295 ~~~~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l 342 (416)
...|+|++|. --+... +. ..|.+....||+|.+++-
T Consensus 121 ---s~AdvVf~Nn--~~F~~~------l~-~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 121 ---SDADVVFVNN--TCFDPD------LN-LALAELLLELKPGARIIS 156 (205)
T ss_dssp ---HC-SEEEE----TTT-HH------HH-HHHHHHHTTS-TT-EEEE
T ss_pred ---cCCCEEEEec--cccCHH------HH-HHHHHHHhcCCCCCEEEE
Confidence 3468898872 111100 11 334666678888877653
No 236
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=96.88 E-value=0.004 Score=60.33 Aligned_cols=102 Identities=16% Similarity=0.149 Sum_probs=65.3
Q ss_pred CCeEEEEeccccHHHHHHH----HhCC-----CCeEEEEchHHHHHHHHHHh-------------------------C--
Q 014919 231 QPLVVDIGSGNGLFLLGMA----RKRK-----DLNFLGLELVTHCRDSLQLS-------------------------G-- 274 (416)
Q Consensus 231 ~~~vLDIGCG~G~~~~~lA----~~~p-----~~~~iGvD~~~~a~~~a~~~-------------------------~-- 274 (416)
.-+|.-.||++|.-.-.|| +..| ..+++|.|++..++++|+.. +
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 5689999999997644443 4454 58999999866666554310 1
Q ss_pred ------CCcEEEEEcChhhhhhhhhccCCCceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919 275 ------ITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 343 (416)
Q Consensus 275 ------l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~ 343 (416)
.++|+|-+.|...- . + ..+.||+|++--.--++.. -.+.+.++.++..|+|||.|++-
T Consensus 177 ~v~~~ir~~V~F~~~NLl~~---~-~-~~~~fD~IfCRNVLIYFd~------~~q~~il~~f~~~L~~gG~LflG 240 (268)
T COG1352 177 RVKEELRKMVRFRRHNLLDD---S-P-FLGKFDLIFCRNVLIYFDE------ETQERILRRFADSLKPGGLLFLG 240 (268)
T ss_pred EEChHHhcccEEeecCCCCC---c-c-ccCCCCEEEEcceEEeeCH------HHHHHHHHHHHHHhCCCCEEEEc
Confidence 12466666665442 1 0 2567998864311111111 13468899999999999999995
No 237
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=96.86 E-value=0.011 Score=64.69 Aligned_cols=122 Identities=15% Similarity=0.124 Sum_probs=79.0
Q ss_pred CCeEEEEeccccHHHHHHHHhC-------C-----CCeEEEEch-------HHHHHH----------HHH-H-----hCC
Q 014919 231 QPLVVDIGSGNGLFLLGMARKR-------K-----DLNFLGLEL-------VTHCRD----------SLQ-L-----SGI 275 (416)
Q Consensus 231 ~~~vLDIGCG~G~~~~~lA~~~-------p-----~~~~iGvD~-------~~~a~~----------~a~-~-----~~l 275 (416)
.-+|+|+|+|+|...+...+.+ | ..+|+++|. +.++.+ ... . .|+
T Consensus 58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~ 137 (662)
T PRK01747 58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGC 137 (662)
T ss_pred cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCc
Confidence 4689999999999877666443 4 368999993 111111 010 0 122
Q ss_pred -------C--cEEEEEcChhhhhhhhhccCCCceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCc
Q 014919 276 -------T--NGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI 346 (416)
Q Consensus 276 -------~--nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~ 346 (416)
. ++.++.+|+.+.+++. ...+|.+|+ |+......+ .+-++++++.+++.++|||++.--|
T Consensus 138 ~~~~~~~~~~~l~l~~gd~~~~~~~~----~~~~d~~~l---D~FsP~~np--~~W~~~~~~~l~~~~~~~~~~~t~t-- 206 (662)
T PRK01747 138 HRLLFDDGRVTLDLWFGDANELLPQL----DARADAWFL---DGFAPAKNP--DMWSPNLFNALARLARPGATLATFT-- 206 (662)
T ss_pred eEEEecCCcEEEEEEecCHHHHHHhc----cccccEEEe---CCCCCccCh--hhccHHHHHHHHHHhCCCCEEEEee--
Confidence 1 4668889998875432 356898876 443211111 1235799999999999999988544
Q ss_pred HHHHHHHHHHHHhCCCCce
Q 014919 347 EEVMLRMKQQFLEYGKGKL 365 (416)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~ 365 (416)
-...++..|.+.||.+.
T Consensus 207 --~a~~vr~~l~~~GF~v~ 223 (662)
T PRK01747 207 --SAGFVRRGLQEAGFTVR 223 (662)
T ss_pred --hHHHHHHHHHHcCCeee
Confidence 34557788889998654
No 238
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=96.81 E-value=0.005 Score=57.18 Aligned_cols=102 Identities=13% Similarity=0.080 Sum_probs=69.3
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhC---CCcEEEEEcChhhhhhhhhccCCCceeEEEEE
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSG---ITNGYFIATNATSTFRSIVASYPGKLILVSIQ 306 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~---l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~ 306 (416)
++.+||+||+|.|.....+-++.|..++| ||.-....++.+..+ -.||..+.+-=++.++.. +++.||.|+.-
T Consensus 101 kggrvLnVGFGMgIidT~iQe~~p~~H~I-iE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L---~d~~FDGI~yD 176 (271)
T KOG1709|consen 101 KGGRVLNVGFGMGIIDTFIQEAPPDEHWI-IEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTL---PDKHFDGIYYD 176 (271)
T ss_pred CCceEEEeccchHHHHHHHhhcCCcceEE-EecCHHHHHHHHhcccccccceEEEecchHhhhccc---cccCcceeEee
Confidence 58999999999999988887777766554 664444444444443 368888888766654432 57889999753
Q ss_pred CCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919 307 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 343 (416)
Q Consensus 307 fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~ 343 (416)
-+. .+.. -...|.+.+.|.|||+|.+.+-
T Consensus 177 ---Ty~--e~yE---dl~~~hqh~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 177 ---TYS--ELYE---DLRHFHQHVVRLLKPEGVFSYF 205 (271)
T ss_pred ---chh--hHHH---HHHHHHHHHhhhcCCCceEEEe
Confidence 220 0000 0126778999999999998774
No 239
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=96.80 E-value=0.0027 Score=55.47 Aligned_cols=59 Identities=27% Similarity=0.401 Sum_probs=43.8
Q ss_pred CCCeEEEEeccccHHHHHHHHh----CCCCeEEEEch----HHHHHHHHHHhC--C-CcEEEEEcChhhh
Q 014919 230 AQPLVVDIGSGNGLFLLGMARK----RKDLNFLGLEL----VTHCRDSLQLSG--I-TNGYFIATNATST 288 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~----~p~~~~iGvD~----~~~a~~~a~~~~--l-~nv~f~~~Da~~l 288 (416)
....|+|+|||.|..+..||.. .++.+++|||. ...+.+++++.+ . .++++..++....
T Consensus 25 ~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (141)
T PF13679_consen 25 RCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADE 94 (141)
T ss_pred CCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhh
Confidence 4678999999999999999981 27899999995 445555555544 3 5677777766543
No 240
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=96.69 E-value=0.021 Score=56.93 Aligned_cols=128 Identities=16% Similarity=0.179 Sum_probs=92.3
Q ss_pred CCCeEEEEeccccHHHHHHHHhCC-CCeEEEEchHHHHHHHHH---------HhCC--CcEEEEEcChhhhhhhhhccCC
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLELVTHCRDSLQ---------LSGI--TNGYFIATNATSTFRSIVASYP 297 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p-~~~~iGvD~~~~a~~~a~---------~~~l--~nv~f~~~Da~~l~~~~~~~~~ 297 (416)
....+|=+|-|.|-.+.++.+ +| -.+++-+|+..++++.++ ++.. ++++++..|+.++++. ..
T Consensus 289 ~a~~vLvlGGGDGLAlRellk-yP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~----a~ 363 (508)
T COG4262 289 GARSVLVLGGGDGLALRELLK-YPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRT----AA 363 (508)
T ss_pred ccceEEEEcCCchHHHHHHHh-CCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHh----hc
Confidence 367899999999988888875 67 457888885443333221 2223 4699999999998653 35
Q ss_pred CceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcH----HHHHHHHHHHHhCCCCce
Q 014919 298 GKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE----EVMLRMKQQFLEYGKGKL 365 (416)
Q Consensus 298 ~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~----~~~~~~~~~~~~~~~~~~ 365 (416)
+.||.+.+.+|||-.. .-.|+...+|...+.|.|+++|.+.++.-.. +.+-.+...+++.|+..+
T Consensus 364 ~~fD~vIVDl~DP~tp---s~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~tp~vfw~i~aTik~AG~~~~ 432 (508)
T COG4262 364 DMFDVVIVDLPDPSTP---SIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYFTPRVFWRIDATIKSAGYRVW 432 (508)
T ss_pred ccccEEEEeCCCCCCc---chhhhhhHHHHHHHHHhcCcCceEEEecCCCccCCceeeeehhHHHhCcceee
Confidence 6899999999999521 2347888899999999999999999974332 223345667788886543
No 241
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.51 E-value=0.01 Score=56.04 Aligned_cols=151 Identities=17% Similarity=0.085 Sum_probs=93.7
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCC
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN 309 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpd 309 (416)
.+.++||||.-||.|+..+.++ ....++|+|+-..-+..--++...-+.+.+.|++.+.++.| .+..|.+++--
T Consensus 79 k~kv~LDiGsSTGGFTd~lLq~-gAk~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~---~~~~d~~v~Dv-- 152 (245)
T COG1189 79 KGKVVLDIGSSTGGFTDVLLQR-GAKHVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDF---TEKPDLIVIDV-- 152 (245)
T ss_pred CCCEEEEecCCCccHHHHHHHc-CCcEEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHc---ccCCCeEEEEe--
Confidence 4799999999999999998886 35689999974322222112233335667788887755444 23667765431
Q ss_pred CCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCCceeeeccccccccCCCCCCCCCCCCC
Q 014919 310 PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENSFGV 389 (416)
Q Consensus 310 pw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 389 (416)
.+. --...|..+..+|+|++.+..- ..+.|+...+.+...|. + .|+ ..+..+
T Consensus 153 SFI---------SL~~iLp~l~~l~~~~~~~v~L--vKPQFEagr~~v~kkGv----v-~d~------------~~~~~v 204 (245)
T COG1189 153 SFI---------SLKLILPALLLLLKDGGDLVLL--VKPQFEAGREQVGKKGV----V-RDP------------KLHAEV 204 (245)
T ss_pred ehh---------hHHHHHHHHHHhcCCCceEEEE--ecchhhhhhhhcCcCce----e-cCc------------chHHHH
Confidence 110 0136788899999999987763 45678877776654332 1 121 011234
Q ss_pred CCHHHHHHHHCCCCeEEEEEEeCCC
Q 014919 390 RSDWEQHVIDRGAPMYRLMLSKPSC 414 (416)
Q Consensus 390 ~T~~E~k~~~~G~~i~~~~~~k~~~ 414 (416)
..+.+....+.|..+..+.+..+.+
T Consensus 205 ~~~i~~~~~~~g~~~~gl~~Spi~G 229 (245)
T COG1189 205 LSKIENFAKELGFQVKGLIKSPIKG 229 (245)
T ss_pred HHHHHHHHhhcCcEEeeeEccCccC
Confidence 4555666666677777766666544
No 242
>KOG2730 consensus Methylase [General function prediction only]
Probab=96.50 E-value=0.0028 Score=58.94 Aligned_cols=78 Identities=15% Similarity=0.123 Sum_probs=55.5
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchH----HHHHHHHHHhCCC-cEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELV----THCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVS 304 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~----~~a~~~a~~~~l~-nv~f~~~Da~~l~~~~~~~~~~s~D~v~ 304 (416)
+.+.|+|.=||-|..++..|.++| .|++||+. .-|.++++-.|++ +|.|+|+|..++...+ .+....+|+++
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~--~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~l-q~~K~~~~~vf 170 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGP--YVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKL-KADKIKYDCVF 170 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCC--eEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHH-hhhhheeeeee
Confidence 368899999999999999999976 79999973 3344455556765 5999999998875322 11233455665
Q ss_pred EECCCCCC
Q 014919 305 IQCPNPDF 312 (416)
Q Consensus 305 ~~fpdpw~ 312 (416)
.. .||-
T Consensus 171 ~s--ppwg 176 (263)
T KOG2730|consen 171 LS--PPWG 176 (263)
T ss_pred cC--CCCC
Confidence 43 5663
No 243
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=96.47 E-value=0.087 Score=49.47 Aligned_cols=124 Identities=17% Similarity=0.148 Sum_probs=83.9
Q ss_pred CCCeEEEEeccccHHHHHHHHhC-CCCeEEEEchHHHHHHHHH--HhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEE
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLELVTHCRDSLQ--LSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 306 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~-p~~~~iGvD~~~~a~~~a~--~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~ 306 (416)
.+.+||-+|..+|.....++.-. |+-.++|||.+.+..+.+- ...-+|+--+.+||..- ..+-. .-+.+|+|+..
T Consensus 73 ~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P-~~Y~~-lv~~VDvI~~D 150 (229)
T PF01269_consen 73 PGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHP-EKYRM-LVEMVDVIFQD 150 (229)
T ss_dssp TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSG-GGGTT-TS--EEEEEEE
T ss_pred CCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCCh-HHhhc-ccccccEEEec
Confidence 47899999999999999999864 5889999998765544321 12347999999999864 22211 23589999887
Q ss_pred CCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe---------CcHHHHHHHHHHHHhCCCCce
Q 014919 307 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS---------DIEEVMLRMKQQFLEYGKGKL 365 (416)
Q Consensus 307 fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t---------D~~~~~~~~~~~~~~~~~~~~ 365 (416)
-..|- +. .-++......||+||.+++.. +.+..|..-.+.+++.++...
T Consensus 151 VaQp~----Qa------~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L~~~~~~~~ 208 (229)
T PF01269_consen 151 VAQPD----QA------RIAALNARHFLKPGGHLIISIKARSIDSTADPEEVFAEEVKKLKEEGFKPL 208 (229)
T ss_dssp -SSTT----HH------HHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHHHHHHHCTTCEEE
T ss_pred CCChH----HH------HHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHHHHHHHHHHHHcCCChh
Confidence 54331 11 245667778999999988752 445566666777888777643
No 244
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=96.43 E-value=0.0033 Score=63.53 Aligned_cols=99 Identities=14% Similarity=0.091 Sum_probs=66.8
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHH----HHHHHHHHhCCCc-EEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVT----HCRDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVSI 305 (416)
Q Consensus 231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~----~a~~~a~~~~l~n-v~f~~~Da~~l~~~~~~~~~~s~D~v~~ 305 (416)
...++|+|||-|.....++. +..++++|+|... ++...+....++| -.++.+|+... |++++.+|.+.+
T Consensus 111 ~~~~~~~~~g~~~~~~~i~~-f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~-----~fedn~fd~v~~ 184 (364)
T KOG1269|consen 111 GSKVLDVGTGVGGPSRYIAV-FKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKM-----PFEDNTFDGVRF 184 (364)
T ss_pred cccccccCcCcCchhHHHHH-hccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcC-----CCCccccCcEEE
Confidence 34789999999999888875 4678999999632 2222233334433 23366777665 457899999876
Q ss_pred ECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919 306 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 343 (416)
Q Consensus 306 ~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~ 343 (416)
.-.-.+ ...| ..++++++|+++|||++...
T Consensus 185 ld~~~~-~~~~-------~~~y~Ei~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 185 LEVVCH-APDL-------EKVYAEIYRVLKPGGLFIVK 214 (364)
T ss_pred Eeeccc-CCcH-------HHHHHHHhcccCCCceEEeH
Confidence 632221 1111 38899999999999998873
No 245
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=96.15 E-value=0.074 Score=48.54 Aligned_cols=121 Identities=18% Similarity=0.228 Sum_probs=72.4
Q ss_pred CCeEEEEeccccHHHHHHHHh-CCCCeEEEEchHHHHHHHHHHhCCCcEEEEEc-Chhhhh--hhhhc-cCCCceeEEEE
Q 014919 231 QPLVVDIGSGNGLFLLGMARK-RKDLNFLGLELVTHCRDSLQLSGITNGYFIAT-NATSTF--RSIVA-SYPGKLILVSI 305 (416)
Q Consensus 231 ~~~vLDIGCG~G~~~~~lA~~-~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~-Da~~l~--~~~~~-~~~~s~D~v~~ 305 (416)
+.+|||+||..|.++...-++ +|+..++|||+.-- ..++.+.++++ |+.+-. ...|. .++..+|+|..
T Consensus 70 ~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~-------~p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~VdvVlS 142 (232)
T KOG4589|consen 70 EDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI-------EPPEGATIIQGNDVTDPETYRKIFEALPNRPVDVVLS 142 (232)
T ss_pred CCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec-------cCCCCcccccccccCCHHHHHHHHHhCCCCcccEEEe
Confidence 789999999999999877776 49999999997321 12334555565 555421 11121 14677898865
Q ss_pred E-CCCCC-CCCcchhhhhhh--HHHHHHHHhhccCCcEEEEEe----CcHHHHHHHHHHHHh
Q 014919 306 Q-CPNPD-FNRPEHRWRMVQ--RSLVEAVSDLLVHDGKVFLQS----DIEEVMLRMKQQFLE 359 (416)
Q Consensus 306 ~-fpdpw-~k~~h~krRl~~--~~~l~~i~r~LkpgG~l~l~t----D~~~~~~~~~~~~~~ 359 (416)
- .|++- ...+.|- |++. .+.|.-....++|+|.+.+++ +...+-..|.+.|+.
T Consensus 143 DMapnaTGvr~~Dh~-~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e~~~l~r~l~~~f~~ 203 (232)
T KOG4589|consen 143 DMAPNATGVRIRDHY-RSIELCDSALLFALTLLIPNGSFVCKLWDGSEEALLQRRLQAVFTN 203 (232)
T ss_pred ccCCCCcCcchhhHH-HHHHHHHHHHHHhhhhcCCCcEEEEEEecCCchHHHHHHHHHHhhh
Confidence 3 23221 0112221 2222 234455566789999999874 444555556665554
No 246
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.10 E-value=0.14 Score=47.32 Aligned_cols=125 Identities=17% Similarity=0.143 Sum_probs=88.4
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHH--HhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEEC
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ--LSGITNGYFIATNATSTFRSIVASYPGKLILVSIQC 307 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~--~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~f 307 (416)
.+..||=+|.-+|....+.+.-.++-.++|||.+.+..+..- ...-+|+--+..||..- ..+- .--+.+|+|+.-.
T Consensus 76 ~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P-~~Y~-~~Ve~VDviy~DV 153 (231)
T COG1889 76 EGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDARKP-EKYR-HLVEKVDVIYQDV 153 (231)
T ss_pred CCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCceeeecccCCc-HHhh-hhcccccEEEEec
Confidence 578999999999999999999888889999997655444321 12357899999999864 2221 0235699998764
Q ss_pred CCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE---------eCcHHHHHHHHHHHHhCCCCcee
Q 014919 308 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ---------SDIEEVMLRMKQQFLEYGKGKLV 366 (416)
Q Consensus 308 pdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~---------tD~~~~~~~~~~~~~~~~~~~~~ 366 (416)
..|- +. .-+.......||+||.++++ .|-...|..-.+.+++.+|....
T Consensus 154 AQp~----Qa------~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~ev~kL~~~~f~i~e 211 (231)
T COG1889 154 AQPN----QA------EILADNAEFFLKKGGYVVIAIKARSIDVTADPEEVFKDEVEKLEEGGFEILE 211 (231)
T ss_pred CCch----HH------HHHHHHHHHhcccCCeEEEEEEeecccccCCHHHHHHHHHHHHHhcCceeeE
Confidence 4441 11 24567778899999976663 25567777777788888776543
No 247
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=96.08 E-value=0.02 Score=55.05 Aligned_cols=107 Identities=14% Similarity=0.156 Sum_probs=67.6
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHH--hCC---CcEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL--SGI---TNGYFIATNATSTFRSIVASYPGKLILVS 304 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~--~~l---~nv~f~~~Da~~l~~~~~~~~~~s~D~v~ 304 (416)
....|||||-|||..+..|.++ ..+|+++|+..+.....++ +|. ..++++.+|.... +...||.+.
T Consensus 58 ~tD~VLEvGPGTGnLT~~lLe~--~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~-------d~P~fd~cV 128 (315)
T KOG0820|consen 58 PTDVVLEVGPGTGNLTVKLLEA--GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKT-------DLPRFDGCV 128 (315)
T ss_pred CCCEEEEeCCCCCHHHHHHHHh--cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccC-------CCcccceee
Confidence 3689999999999999999988 6799999976555444332 233 2499999999776 123577776
Q ss_pred EECCCCCCC-----Ccchh---h---hhhhHHHHHHHHhhccCCcEEEEEeCcH
Q 014919 305 IQCPNPDFN-----RPEHR---W---RMVQRSLVEAVSDLLVHDGKVFLQSDIE 347 (416)
Q Consensus 305 ~~fpdpw~k-----~~h~k---r---Rl~~~~~l~~i~r~LkpgG~l~l~tD~~ 347 (416)
.|.|..... .-.+. | -+++.+|...+ +=+||-.+|+..+..
T Consensus 129 sNlPyqISSp~vfKLL~~~~~fr~AvlmfQ~Efa~RL--va~pgd~~Ycrlsin 180 (315)
T KOG0820|consen 129 SNLPYQISSPLVFKLLLHRPVFRCAVLMFQREFALRL--VARPGDSLYCRLSIN 180 (315)
T ss_pred ccCCccccCHHHHHhcCCCCCcceeeeehhhhhhhhh--ccCCCCchhceeehh
Confidence 664322110 00000 0 01244554444 457888888876654
No 248
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=96.02 E-value=0.036 Score=55.18 Aligned_cols=96 Identities=13% Similarity=0.115 Sum_probs=65.5
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCCC
Q 014919 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNP 310 (416)
Q Consensus 231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdp 310 (416)
-...+|+|-|.|..+..+...+|+...+=.|. ....+.+...+ +.|..+-+|..+- .| . -|.|++.+.-.
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp~ik~infdl-p~v~~~a~~~~-~gV~~v~gdmfq~----~P--~--~daI~mkWiLh 247 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYPHIKGINFDL-PFVLAAAPYLA-PGVEHVAGDMFQD----TP--K--GDAIWMKWILH 247 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCCCCceeecCH-HHHHhhhhhhc-CCcceeccccccc----CC--C--cCeEEEEeecc
Confidence 58899999999999999999999766555553 22233322333 5577888887543 23 2 35888775422
Q ss_pred -CCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919 311 -DFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 343 (416)
Q Consensus 311 -w~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~ 343 (416)
|. +.+ . -+||++++..|+|||.+++.
T Consensus 248 dwt-Ded----c--vkiLknC~~sL~~~GkIiv~ 274 (342)
T KOG3178|consen 248 DWT-DED----C--VKILKNCKKSLPPGGKIIVV 274 (342)
T ss_pred cCC-hHH----H--HHHHHHHHHhCCCCCEEEEE
Confidence 32 211 1 38999999999999999986
No 249
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=96.01 E-value=0.084 Score=50.97 Aligned_cols=75 Identities=16% Similarity=0.160 Sum_probs=53.6
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHh--CCCcEEEEEcChhhhhhhhhccCCCceeEEEEEC
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS--GITNGYFIATNATSTFRSIVASYPGKLILVSIQC 307 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~--~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~f 307 (416)
.+..|||||+|.|.++..|++.. .+++++|......+..++. ..+|++++.+|+..+ +.... ..+.-..|+.|.
T Consensus 30 ~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~-~~~~~-~~~~~~~vv~Nl 105 (262)
T PF00398_consen 30 EGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKW-DLYDL-LKNQPLLVVGNL 105 (262)
T ss_dssp TTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTS-CGGGH-CSSSEEEEEEEE
T ss_pred CCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHHhhhcccceeeecchhcc-ccHHh-hcCCceEEEEEe
Confidence 47899999999999999999986 7999999866555555442 357899999999887 21100 123455677774
Q ss_pred C
Q 014919 308 P 308 (416)
Q Consensus 308 p 308 (416)
|
T Consensus 106 P 106 (262)
T PF00398_consen 106 P 106 (262)
T ss_dssp T
T ss_pred c
Confidence 3
No 250
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=95.97 E-value=0.02 Score=56.31 Aligned_cols=81 Identities=12% Similarity=0.209 Sum_probs=41.5
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHH----HHHHHHHHh-CCC-cEEEEEcChh-hhhhhhhccCCCceeEE
Q 014919 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVT----HCRDSLQLS-GIT-NGYFIATNAT-STFRSIVASYPGKLILV 303 (416)
Q Consensus 231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~----~a~~~a~~~-~l~-nv~f~~~Da~-~l~~~~~~~~~~s~D~v 303 (416)
.-++||||||.-..--.|+.+..+++|+|.|+.. .|.+.++.+ +++ +|+++...-. .++..... ..+.||..
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~-~~e~~dft 181 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQ-PNERFDFT 181 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT---S-EEEE
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhc-ccceeeEE
Confidence 5689999999987754555444489999999744 455555566 665 5887765432 23222221 34678988
Q ss_pred EEECCCCCCCC
Q 014919 304 SIQCPNPDFNR 314 (416)
Q Consensus 304 ~~~fpdpw~k~ 314 (416)
.+| .|++..
T Consensus 182 mCN--PPFy~s 190 (299)
T PF05971_consen 182 MCN--PPFYSS 190 (299)
T ss_dssp EE-------SS
T ss_pred ecC--CccccC
Confidence 887 566543
No 251
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=95.80 E-value=0.072 Score=46.52 Aligned_cols=84 Identities=11% Similarity=0.127 Sum_probs=51.6
Q ss_pred eEEEEchHHHHHH----HHHHhCCC-cEEEEEcChhhhhhhhhccCCCceeEEEEECCCCCCCCcch---hhhhhhHHHH
Q 014919 256 NFLGLELVTHCRD----SLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEH---RWRMVQRSLV 327 (416)
Q Consensus 256 ~~iGvD~~~~a~~----~a~~~~l~-nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdpw~k~~h~---krRl~~~~~l 327 (416)
+|+|+|+-+.|++ +.++.++. ++++++.+-..+ .++++ ++++|.+.+|+- |.+...+ -+.-..-..+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l-~~~i~--~~~v~~~iFNLG--YLPggDk~i~T~~~TTl~Al 75 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENL-DEYIP--EGPVDAAIFNLG--YLPGGDKSITTKPETTLKAL 75 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGG-GGT----S--EEEEEEEES--B-CTS-TTSB--HHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHH-HhhCc--cCCcCEEEEECC--cCCCCCCCCCcCcHHHHHHH
Confidence 5899998555544 44555654 699999998887 55552 358999998852 2111111 1111234779
Q ss_pred HHHHhhccCCcEEEEEe
Q 014919 328 EAVSDLLVHDGKVFLQS 344 (416)
Q Consensus 328 ~~i~r~LkpgG~l~l~t 344 (416)
+.+.+.|+|||.+.+..
T Consensus 76 ~~al~lL~~gG~i~iv~ 92 (140)
T PF06962_consen 76 EAALELLKPGGIITIVV 92 (140)
T ss_dssp HHHHHHEEEEEEEEEEE
T ss_pred HHHHHhhccCCEEEEEE
Confidence 99999999999999874
No 252
>PRK10742 putative methyltransferase; Provisional
Probab=95.75 E-value=0.18 Score=48.30 Aligned_cols=70 Identities=17% Similarity=0.124 Sum_probs=51.9
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEch-------HHHHHHHHHH---hC--C-CcEEEEEcChhhhhhhhhccCC
Q 014919 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL-------VTHCRDSLQL---SG--I-TNGYFIATNATSTFRSIVASYP 297 (416)
Q Consensus 231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~-------~~~a~~~a~~---~~--l-~nv~f~~~Da~~l~~~~~~~~~ 297 (416)
.+.|||.=+|.|.-++.+|.+ ++.++++|. +...++++.. .+ + .|++++++|+.+++.. . .
T Consensus 89 ~p~VLD~TAGlG~Da~~las~--G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~-~---~ 162 (250)
T PRK10742 89 LPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTD-I---T 162 (250)
T ss_pred CCEEEECCCCccHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhh-C---C
Confidence 469999999999999999988 778999993 2233333211 12 2 5799999999998753 2 3
Q ss_pred CceeEEEEE
Q 014919 298 GKLILVSIQ 306 (416)
Q Consensus 298 ~s~D~v~~~ 306 (416)
.+||+||+-
T Consensus 163 ~~fDVVYlD 171 (250)
T PRK10742 163 PRPQVVYLD 171 (250)
T ss_pred CCCcEEEEC
Confidence 479999873
No 253
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=95.72 E-value=0.05 Score=54.34 Aligned_cols=86 Identities=10% Similarity=0.097 Sum_probs=61.1
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCC
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN 309 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpd 309 (416)
.+..+|||||++|.++..|+++ +..|+|||....+-. . ..-++|..++.|..... | ..+.+|.+++-...
T Consensus 211 ~g~~vlDLGAsPGGWT~~L~~r--G~~V~AVD~g~l~~~-L--~~~~~V~h~~~d~fr~~----p-~~~~vDwvVcDmve 280 (357)
T PRK11760 211 PGMRAVDLGAAPGGWTYQLVRR--GMFVTAVDNGPMAQS-L--MDTGQVEHLRADGFKFR----P-PRKNVDWLVCDMVE 280 (357)
T ss_pred CCCEEEEeCCCCcHHHHHHHHc--CCEEEEEechhcCHh-h--hCCCCEEEEeccCcccC----C-CCCCCCEEEEeccc
Confidence 4789999999999999999998 569999995432211 1 23467999999987762 2 25678998765321
Q ss_pred CCCCCcchhhhhhhHHHHHHHHhhccCC
Q 014919 310 PDFNRPEHRWRMVQRSLVEAVSDLLVHD 337 (416)
Q Consensus 310 pw~k~~h~krRl~~~~~l~~i~r~Lkpg 337 (416)
. + .+.++.+.++|..|
T Consensus 281 ~------P------~rva~lm~~Wl~~g 296 (357)
T PRK11760 281 K------P------ARVAELMAQWLVNG 296 (357)
T ss_pred C------H------HHHHHHHHHHHhcC
Confidence 1 1 25667788888776
No 254
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=95.56 E-value=0.16 Score=51.73 Aligned_cols=112 Identities=17% Similarity=0.180 Sum_probs=79.7
Q ss_pred CCCeEEEEeccccHHHHHHHHhCC-CCeEEEEchH----HHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLELV----THCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS 304 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p-~~~~iGvD~~----~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~ 304 (416)
.+.+|||..+..|.=+..+|.... .-.+++.|.. .....++.+.|..|...+..|..++....| .++||.|.
T Consensus 241 ~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~---~~~fDRVL 317 (460)
T KOG1122|consen 241 PGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEF---PGSFDRVL 317 (460)
T ss_pred CCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCccccccccc---Ccccceee
Confidence 478999999999999999888644 3478999953 334455677899999999999987733444 34999998
Q ss_pred EECCC---------C---CCCCcch--hhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919 305 IQCPN---------P---DFNRPEH--RWRMVQRSLVEAVSDLLVHDGKVFLQS 344 (416)
Q Consensus 305 ~~fpd---------p---w~k~~h~--krRl~~~~~l~~i~r~LkpgG~l~l~t 344 (416)
+--|= + |.+.... +.-.+|.++|......+++||+|..+|
T Consensus 318 LDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYST 371 (460)
T KOG1122|consen 318 LDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYST 371 (460)
T ss_pred ecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEe
Confidence 75321 1 1110000 011246789999999999999999886
No 255
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=95.53 E-value=0.0049 Score=56.88 Aligned_cols=93 Identities=23% Similarity=0.277 Sum_probs=61.5
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEE-CC
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ-CP 308 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~-fp 308 (416)
...++||+|.|.|..+..|+..+. .+++.|++..++.+.+..+.. |- .+.+.+. .+-.+|+|.+. .-
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~fe--evyATElS~tMr~rL~kk~yn-Vl----~~~ew~~-----t~~k~dli~clNlL 179 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPTFE--EVYATELSWTMRDRLKKKNYN-VL----TEIEWLQ-----TDVKLDLILCLNLL 179 (288)
T ss_pred CCeeEEeccCCCcchhhhhcchHH--HHHHHHhhHHHHHHHhhcCCc-ee----eehhhhh-----cCceeehHHHHHHH
Confidence 467899999999999999998765 588889888888877665532 21 1122211 13357776532 11
Q ss_pred CCCCCCcchhhhhhhHHHHHHHHhhccC-CcEEEEE
Q 014919 309 NPDFNRPEHRWRMVQRSLVEAVSDLLVH-DGKVFLQ 343 (416)
Q Consensus 309 dpw~k~~h~krRl~~~~~l~~i~r~Lkp-gG~l~l~ 343 (416)
|-.+. .-.+|+.++.+|+| +|+++++
T Consensus 180 DRc~~---------p~kLL~Di~~vl~psngrviva 206 (288)
T KOG3987|consen 180 DRCFD---------PFKLLEDIHLVLAPSNGRVIVA 206 (288)
T ss_pred HhhcC---------hHHHHHHHHHHhccCCCcEEEE
Confidence 11100 02789999999999 8987764
No 256
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=95.09 E-value=0.12 Score=51.19 Aligned_cols=76 Identities=11% Similarity=0.058 Sum_probs=56.4
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHh--C-CCcEEEEEcChhhhhhhhhcc-CCCceeEEEE
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS--G-ITNGYFIATNATSTFRSIVAS-YPGKLILVSI 305 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~--~-l~nv~f~~~Da~~l~~~~~~~-~~~s~D~v~~ 305 (416)
.+.+++|-=||.|.++..++++.|+..++|+|....|++.+++. . ..++++++++..++. ..+.. ...++|.|++
T Consensus 20 ~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~l~-~~l~~~~~~~vDgIl~ 98 (305)
T TIGR00006 20 PDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFANFF-EHLDELLVTKIDGILV 98 (305)
T ss_pred CCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHHHH-HHHHhcCCCcccEEEE
Confidence 35799999999999999999998779999999766666554321 1 247999999999873 33321 2356888865
Q ss_pred E
Q 014919 306 Q 306 (416)
Q Consensus 306 ~ 306 (416)
.
T Consensus 99 D 99 (305)
T TIGR00006 99 D 99 (305)
T ss_pred e
Confidence 4
No 257
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=95.07 E-value=0.079 Score=51.20 Aligned_cols=122 Identities=14% Similarity=0.191 Sum_probs=60.4
Q ss_pred CCeEEEEecccc--HHHHHHHHh-CCCCeEEEEchH----HHHHHHHHHhCCCc--EEEEEcChhhhhhhhhcc------
Q 014919 231 QPLVVDIGSGNG--LFLLGMARK-RKDLNFLGLELV----THCRDSLQLSGITN--GYFIATNATSTFRSIVAS------ 295 (416)
Q Consensus 231 ~~~vLDIGCG~G--~~~~~lA~~-~p~~~~iGvD~~----~~a~~~a~~~~l~n--v~f~~~Da~~l~~~~~~~------ 295 (416)
-...||||||-= ..+-+.|++ .|+++|+=+|.- ..++.... +-++ ..++++|+.+. ...+..
T Consensus 69 IrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~--~~~~g~t~~v~aD~r~p-~~iL~~p~~~~~ 145 (267)
T PF04672_consen 69 IRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLA--DNPRGRTAYVQADLRDP-EAILAHPEVRGL 145 (267)
T ss_dssp --EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHT--T-TTSEEEEEE--TT-H-HHHHCSHHHHCC
T ss_pred cceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhc--CCCCccEEEEeCCCCCH-HHHhcCHHHHhc
Confidence 467999999943 346666664 799999999953 33333332 3345 89999999875 333310
Q ss_pred --CCCceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe---C-cHHHHHHHHHHHHhCC
Q 014919 296 --YPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS---D-IEEVMLRMKQQFLEYG 361 (416)
Q Consensus 296 --~~~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t---D-~~~~~~~~~~~~~~~~ 361 (416)
.+..+-++ +.-.-+|..+... -..+++.+...|.||.+|.++. | .....+.+.+.+.+.+
T Consensus 146 lD~~rPVavl-l~~vLh~v~D~~d-----p~~iv~~l~d~lapGS~L~ish~t~d~~p~~~~~~~~~~~~~~ 211 (267)
T PF04672_consen 146 LDFDRPVAVL-LVAVLHFVPDDDD-----PAGIVARLRDALAPGSYLAISHATDDGAPERAEALEAVYAQAG 211 (267)
T ss_dssp --TTS--EEE-ECT-GGGS-CGCT-----HHHHHHHHHCCS-TT-EEEEEEEB-TTSHHHHHHHHHHHHHCC
T ss_pred CCCCCCeeee-eeeeeccCCCccC-----HHHHHHHHHHhCCCCceEEEEecCCCCCHHHHHHHHHHHHcCC
Confidence 12223233 2222222222111 1388999999999999999973 2 2233344555565544
No 258
>PRK13699 putative methylase; Provisional
Probab=95.04 E-value=0.099 Score=49.50 Aligned_cols=81 Identities=12% Similarity=0.072 Sum_probs=52.7
Q ss_pred EEEEEcChhhhhhhhhccCCCceeEEEEECCCCCCC---Ccchhh---h---hhhHHHHHHHHhhccCCcEEEEEeCcHH
Q 014919 278 GYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFN---RPEHRW---R---MVQRSLVEAVSDLLVHDGKVFLQSDIEE 348 (416)
Q Consensus 278 v~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdpw~k---~~h~kr---R---l~~~~~l~~i~r~LkpgG~l~l~tD~~~ 348 (416)
.+++++|+.+++.. + +++++|+|+.. .|+.. ....+. . -....++++++|+|||||.+++-+++..
T Consensus 2 ~~l~~gD~le~l~~-l--pd~SVDLIiTD--PPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~~~~ 76 (227)
T PRK13699 2 SRFILGNCIDVMAR-F--PDNAVDFILTD--PPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYGWNR 76 (227)
T ss_pred CeEEechHHHHHHh-C--CccccceEEeC--CCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEecccc
Confidence 46889999987653 3 58999999874 34421 111110 0 1124778999999999999987666543
Q ss_pred HHHHHHHHHHhCCCCc
Q 014919 349 VMLRMKQQFLEYGKGK 364 (416)
Q Consensus 349 ~~~~~~~~~~~~~~~~ 364 (416)
. ......+++.||.+
T Consensus 77 ~-~~~~~al~~~GF~l 91 (227)
T PRK13699 77 V-DRFMAAWKNAGFSV 91 (227)
T ss_pred H-HHHHHHHHHCCCEE
Confidence 2 33455677778754
No 259
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=95.01 E-value=0.39 Score=44.99 Aligned_cols=118 Identities=11% Similarity=0.139 Sum_probs=84.5
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEchH----HHHHHHHHHhCC-CcEEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELV----THCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVSI 305 (416)
Q Consensus 231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~----~~a~~~a~~~~l-~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~ 305 (416)
+..+.||||-.+.....|-+++|...+++.|++ ..|.++..++++ +.++...+|....+. .+..+|.+++
T Consensus 17 ~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~-----~~d~~d~ivI 91 (226)
T COG2384 17 GARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLE-----LEDEIDVIVI 91 (226)
T ss_pred CCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccC-----ccCCcCEEEE
Confidence 344999999999999999999999999999974 556666666665 457777888744321 2447899887
Q ss_pred ECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCCce
Q 014919 306 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKL 365 (416)
Q Consensus 306 ~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~~~ 365 (416)
--. .- ++ ...+|++-.+.|+.==++.++..+.. .++++.+..++|.+.
T Consensus 92 AGM------GG---~l-I~~ILee~~~~l~~~~rlILQPn~~~--~~LR~~L~~~~~~I~ 139 (226)
T COG2384 92 AGM------GG---TL-IREILEEGKEKLKGVERLILQPNIHT--YELREWLSANSYEIK 139 (226)
T ss_pred eCC------cH---HH-HHHHHHHhhhhhcCcceEEECCCCCH--HHHHHHHHhCCceee
Confidence 521 11 12 24778888888876567888765543 367788888888654
No 260
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=94.98 E-value=0.12 Score=50.08 Aligned_cols=123 Identities=17% Similarity=0.153 Sum_probs=79.4
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHH-------HHH-------------------------HHH-----
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHC-------RDS-------------------------LQL----- 272 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a-------~~~-------------------------a~~----- 272 (416)
+..+||==|||-|+++..+|.+ +..+.|.|.+..+ +.. .+.
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~--G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD 133 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKL--GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD 133 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhc--cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence 4689999999999999999998 7789999943221 110 000
Q ss_pred -------hCCCcEEEEEcChhhhhhhhhccCCCceeEE-EEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE-
Q 014919 273 -------SGITNGYFIATNATSTFRSIVASYPGKLILV-SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ- 343 (416)
Q Consensus 273 -------~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v-~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~- 343 (416)
....|+.+..+|..++... +...+++|.| +++|-|-- + -+ -++++.|+++|||||.++=.
T Consensus 134 v~p~~~~~~~~~~sm~aGDF~e~y~~--~~~~~~~d~VvT~FFIDTA----~---Ni--~~Yi~tI~~lLkpgG~WIN~G 202 (270)
T PF07942_consen 134 VDPSSELPSPSNLSMCAGDFLEVYGP--DENKGSFDVVVTCFFIDTA----E---NI--IEYIETIEHLLKPGGYWINFG 202 (270)
T ss_pred cCcccccCCCCceeEecCccEEecCC--cccCCcccEEEEEEEeech----H---HH--HHHHHHHHHHhccCCEEEecC
Confidence 0123577777777776221 0013688987 45555541 1 12 38999999999999964311
Q ss_pred ------eC--------cHHHHHHHHHHHHhCCCCce
Q 014919 344 ------SD--------IEEVMLRMKQQFLEYGKGKL 365 (416)
Q Consensus 344 ------tD--------~~~~~~~~~~~~~~~~~~~~ 365 (416)
.+ .+--.+++.++.+..||...
T Consensus 203 PLlyh~~~~~~~~~~sveLs~eEi~~l~~~~GF~~~ 238 (270)
T PF07942_consen 203 PLLYHFEPMSIPNEMSVELSLEEIKELIEKLGFEIE 238 (270)
T ss_pred CccccCCCCCCCCCcccCCCHHHHHHHHHHCCCEEE
Confidence 12 12236778888888888754
No 261
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=94.82 E-value=0.12 Score=48.16 Aligned_cols=104 Identities=14% Similarity=0.164 Sum_probs=51.5
Q ss_pred CCCeEEEEeccccHHHHHHHHh---C-CCCeEEEEchHHHH--HHHHHHhCC-CcEEEEEcChhhhhhhhhccCC--Cce
Q 014919 230 AQPLVVDIGSGNGLFLLGMARK---R-KDLNFLGLELVTHC--RDSLQLSGI-TNGYFIATNATSTFRSIVASYP--GKL 300 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~---~-p~~~~iGvD~~~~a--~~~a~~~~l-~nv~f~~~Da~~l~~~~~~~~~--~s~ 300 (416)
.+.+|+|+|.-.|..++.+|.. . ++.+++|||+.-+. ++..+.+.+ ++|+|+++|..+. ....+... ...
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~-~~~~~v~~~~~~~ 110 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDP-EIVDQVRELASPP 110 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSST-HHHHTSGSS----
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCH-HHHHHHHHhhccC
Confidence 4689999999999999887753 3 88999999983221 222222332 5799999998764 21111000 111
Q ss_pred eEE-EEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEE
Q 014919 301 ILV-SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 342 (416)
Q Consensus 301 D~v-~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l 342 (416)
+.+ .+. |.-|...| + ..-|+.+...+++|+++++
T Consensus 111 ~~vlVil--Ds~H~~~h-----v-l~eL~~y~plv~~G~Y~IV 145 (206)
T PF04989_consen 111 HPVLVIL--DSSHTHEH-----V-LAELEAYAPLVSPGSYLIV 145 (206)
T ss_dssp SSEEEEE--SS----SS-----H-HHHHHHHHHT--TT-EEEE
T ss_pred CceEEEE--CCCccHHH-----H-HHHHHHhCccCCCCCEEEE
Confidence 212 222 43322222 2 2557779999999999877
No 262
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.60 E-value=0.032 Score=49.71 Aligned_cols=122 Identities=17% Similarity=0.161 Sum_probs=76.3
Q ss_pred CCeEEEEecc-ccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHh-------CCCcEEEEEcChhhhhhhhhccCCCceeE
Q 014919 231 QPLVVDIGSG-NGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS-------GITNGYFIATNATSTFRSIVASYPGKLIL 302 (416)
Q Consensus 231 ~~~vLDIGCG-~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~-------~l~nv~f~~~Da~~l~~~~~~~~~~s~D~ 302 (416)
+..|||+|-| +|-.++.+|...|+..|.-.|..+.+.++.++- +++.+..++-+...- ... .....||.
T Consensus 30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~a-qsq--~eq~tFDi 106 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGA-QSQ--QEQHTFDI 106 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhh-HHH--HhhCcccE
Confidence 5789999998 455677788889999999999766555544321 223232222222111 000 12458999
Q ss_pred EEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCc-HHHHHHHHHHHHhCCCC
Q 014919 303 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI-EEVMLRMKQQFLEYGKG 363 (416)
Q Consensus 303 v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~-~~~~~~~~~~~~~~~~~ 363 (416)
|... |.-+-+.|| .++++.|.+.|+|.|.-.+.+.- .+..+..+++....+|.
T Consensus 107 IlaA--DClFfdE~h------~sLvdtIk~lL~p~g~Al~fsPRRg~sL~kF~de~~~~gf~ 160 (201)
T KOG3201|consen 107 ILAA--DCLFFDEHH------ESLVDTIKSLLRPSGRALLFSPRRGQSLQKFLDEVGTVGFT 160 (201)
T ss_pred EEec--cchhHHHHH------HHHHHHHHHHhCcccceeEecCcccchHHHHHHHHHhceeE
Confidence 8754 665545554 48999999999999986664432 23455556667777754
No 263
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=94.59 E-value=0.22 Score=48.53 Aligned_cols=103 Identities=14% Similarity=0.173 Sum_probs=57.6
Q ss_pred CCeEEEEeccc-cHHHHHHHHhC-CCCeEEEEchHHHHHHHHHH-----hCC-CcEEEEEcChhhhhhhhhccCCCceeE
Q 014919 231 QPLVVDIGSGN-GLFLLGMARKR-KDLNFLGLELVTHCRDSLQL-----SGI-TNGYFIATNATSTFRSIVASYPGKLIL 302 (416)
Q Consensus 231 ~~~vLDIGCG~-G~~~~~lA~~~-p~~~~iGvD~~~~a~~~a~~-----~~l-~nv~f~~~Da~~l~~~~~~~~~~s~D~ 302 (416)
..+|+=||||. -..++.||+++ +++.|+++|+...|.+.+++ .++ .++.|+.+|+.+... .-..+|.
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~-----dl~~~Dv 195 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTY-----DLKEYDV 195 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-G-----G----SE
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhcccc-----ccccCCE
Confidence 35999999995 44566777654 68899999986666554432 244 359999999987621 1257999
Q ss_pred EEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeC
Q 014919 303 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD 345 (416)
Q Consensus 303 v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD 345 (416)
|++.---. -...+| .+.|+.+.+.++||..+.+++-
T Consensus 196 V~lAalVg--~~~e~K-----~~Il~~l~~~m~~ga~l~~Rsa 231 (276)
T PF03059_consen 196 VFLAALVG--MDAEPK-----EEILEHLAKHMAPGARLVVRSA 231 (276)
T ss_dssp EEE-TT-S------SH-----HHHHHHHHHHS-TTSEEEEEE-
T ss_pred EEEhhhcc--cccchH-----HHHHHHHHhhCCCCcEEEEecc
Confidence 98752111 012234 3789999999999999999863
No 264
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=94.38 E-value=0.2 Score=52.00 Aligned_cols=100 Identities=11% Similarity=0.093 Sum_probs=69.0
Q ss_pred eEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhC---CCcEEEEEcChhhhhhhhhccCCCceeEEEE----
Q 014919 233 LVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSG---ITNGYFIATNATSTFRSIVASYPGKLILVSI---- 305 (416)
Q Consensus 233 ~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~---l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~---- 305 (416)
++|-+|||+-.+...+-+. -...++-+|++..+.+.....+ .+-.++...|+..+ .+++++||.|..
T Consensus 51 ~~l~lGCGNS~l~e~ly~~-G~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l-----~fedESFdiVIdkGtl 124 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKN-GFEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQL-----VFEDESFDIVIDKGTL 124 (482)
T ss_pred eeEeecCCCCHHHHHHHhc-CCCCceeccccHHHHHHHHhccccCCcceEEEEecchhc-----cCCCcceeEEEecCcc
Confidence 7899999999998887765 2446778887665555443322 23488999998877 347889998742
Q ss_pred --ECC---CCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeC
Q 014919 306 --QCP---NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD 345 (416)
Q Consensus 306 --~fp---dpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD 345 (416)
.|. ++|.+ ++ -...+.+++|+|++||++...|-
T Consensus 125 Dal~~de~a~~~~--~~-----v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 125 DALFEDEDALLNT--AH-----VSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred ccccCCchhhhhh--HH-----hhHHHhhHHHHhccCCEEEEEEe
Confidence 122 23322 11 14778999999999999776653
No 265
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=94.31 E-value=0.076 Score=48.50 Aligned_cols=96 Identities=16% Similarity=0.190 Sum_probs=62.3
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHH----HhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEE
Q 014919 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ----LSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 306 (416)
Q Consensus 231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~----~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~ 306 (416)
...+.|+|.|+|..+.-.|+. .-++++||...+..+.++ -.|..|+.++.+|+.+. .+ ...|.|.+-
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y-----~f--e~ADvvicE 103 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDY-----DF--ENADVVICE 103 (252)
T ss_pred hhceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccc-----cc--cccceeHHH
Confidence 478999999999988877766 558999997544333333 34778999999999876 21 345666433
Q ss_pred CCCCC-CCCcchhhhhhhHHHHHHHHhhccCCcEEEE
Q 014919 307 CPNPD-FNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 342 (416)
Q Consensus 307 fpdpw-~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l 342 (416)
.-|-- .... +-..++.+...||.++.++=
T Consensus 104 mlDTaLi~E~-------qVpV~n~vleFLr~d~tiiP 133 (252)
T COG4076 104 MLDTALIEEK-------QVPVINAVLEFLRYDPTIIP 133 (252)
T ss_pred HhhHHhhccc-------ccHHHHHHHHHhhcCCcccc
Confidence 22211 0000 11456666667888887653
No 266
>PRK11524 putative methyltransferase; Provisional
Probab=94.15 E-value=0.21 Score=48.79 Aligned_cols=81 Identities=9% Similarity=0.059 Sum_probs=51.2
Q ss_pred CcEEEEEcChhhhhhhhhccCCCceeEEEEECCCCCCCCcc-----hh---hhh--hhHHHHHHHHhhccCCcEEEEEeC
Q 014919 276 TNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPE-----HR---WRM--VQRSLVEAVSDLLVHDGKVFLQSD 345 (416)
Q Consensus 276 ~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdpw~k~~h-----~k---rRl--~~~~~l~~i~r~LkpgG~l~l~tD 345 (416)
.+-+++++|+.+.+.. + ++++||+|++. .|+..... .. .+. ....++.++.|+|||||.+++.++
T Consensus 7 ~~~~i~~gD~~~~l~~-l--~~~siDlIitD--PPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~ 81 (284)
T PRK11524 7 EAKTIIHGDALTELKK-I--PSESVDLIFAD--PPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNS 81 (284)
T ss_pred CCCEEEeccHHHHHHh-c--ccCcccEEEEC--CCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcC
Confidence 4567899999997542 3 47899999885 33321110 00 011 124789999999999999999877
Q ss_pred cHHHHHHHHHHHHhCCCC
Q 014919 346 IEEVMLRMKQQFLEYGKG 363 (416)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~ 363 (416)
..... + ...+.+.++.
T Consensus 82 ~~~~~-~-~~~~~~~~f~ 97 (284)
T PRK11524 82 TENMP-F-IDLYCRKLFT 97 (284)
T ss_pred chhhh-H-HHHHHhcCcc
Confidence 75432 2 2334444543
No 267
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=94.12 E-value=0.98 Score=43.03 Aligned_cols=124 Identities=11% Similarity=0.090 Sum_probs=66.2
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHH----HHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHC----RDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 305 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a----~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~ 305 (416)
.+..||=||=.-- .++++|...+..+++-+|+.++. .+.+++.|++ ++..+.|.+.-+++.+ .+.||+++.
T Consensus 44 ~gk~il~lGDDDL-tSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~-i~~~~~DlR~~LP~~~---~~~fD~f~T 118 (243)
T PF01861_consen 44 EGKRILFLGDDDL-TSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP-IEAVHYDLRDPLPEEL---RGKFDVFFT 118 (243)
T ss_dssp TT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT---EEEE---TTS---TTT---SS-BSEEEE
T ss_pred cCCEEEEEcCCcH-HHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc-eEEEEecccccCCHHH---hcCCCEEEe
Confidence 4788999996554 34556666677899999974433 3445677887 9999999988655433 589999987
Q ss_pred ECCCCCCCCcchhhhhhhHHHHHHHHhhccCCc-EEEEE-eCcH-HH--HHHHHHHHHhCCCCceee
Q 014919 306 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDG-KVFLQ-SDIE-EV--MLRMKQQFLEYGKGKLVL 367 (416)
Q Consensus 306 ~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG-~l~l~-tD~~-~~--~~~~~~~~~~~~~~~~~~ 367 (416)
. .||.... -.-|+.+....||.-| ..++. +..+ .. ...+.+.+.+.|+.+...
T Consensus 119 D--PPyT~~G-------~~LFlsRgi~~Lk~~g~~gy~~~~~~~~s~~~~~~~Q~~l~~~gl~i~di 176 (243)
T PF01861_consen 119 D--PPYTPEG-------LKLFLSRGIEALKGEGCAGYFGFTHKEASPDKWLEVQRFLLEMGLVITDI 176 (243)
T ss_dssp -----SSHHH-------HHHHHHHHHHTB-STT-EEEEEE-TTT--HHHHHHHHHHHHTS--EEEEE
T ss_pred C--CCCCHHH-------HHHHHHHHHHHhCCCCceEEEEEecCcCcHHHHHHHHHHHHHCCcCHHHH
Confidence 5 4552211 1378999999999766 55554 2222 12 334667777888765443
No 268
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=94.04 E-value=0.71 Score=45.17 Aligned_cols=123 Identities=18% Similarity=0.191 Sum_probs=86.7
Q ss_pred CCCCCeEEEEeccccHHHHHHHHhCCC-CeEEEEchHHHH----HHHHH--HhCC--CcEEEEEcChhhhhhhhhccCCC
Q 014919 228 DPAQPLVVDIGSGNGLFLLGMARKRKD-LNFLGLELVTHC----RDSLQ--LSGI--TNGYFIATNATSTFRSIVASYPG 298 (416)
Q Consensus 228 ~~~~~~vLDIGCG~G~~~~~lA~~~p~-~~~iGvD~~~~a----~~~a~--~~~l--~nv~f~~~Da~~l~~~~~~~~~~ 298 (416)
.++..++|=||=|.|.+....+++ +. -++.-+|+.... .+-.. ..+. +.|.+.-+|...++... ..+
T Consensus 119 ~~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~---~~~ 194 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDL---KEN 194 (337)
T ss_pred CCCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHh---ccC
Confidence 346789999999999999888876 42 255566642222 22111 1233 56999999999886532 368
Q ss_pred ceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHH
Q 014919 299 KLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFL 358 (416)
Q Consensus 299 s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~ 358 (416)
.+|+|..--+||--.. ..+++..+++.+.+.||+||++.++.|..++.....+...
T Consensus 195 ~~dVii~dssdpvgpa----~~lf~~~~~~~v~~aLk~dgv~~~q~ec~wl~~~~i~e~r 250 (337)
T KOG1562|consen 195 PFDVIITDSSDPVGPA----CALFQKPYFGLVLDALKGDGVVCTQGECMWLHLDYIKEGR 250 (337)
T ss_pred CceEEEEecCCccchH----HHHHHHHHHHHHHHhhCCCcEEEEecceehHHHHHHHHHH
Confidence 9999998888885322 2356779999999999999999999888766555544443
No 269
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=93.97 E-value=0.12 Score=48.96 Aligned_cols=75 Identities=21% Similarity=0.220 Sum_probs=46.4
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEch-------HHHHHHHHHHhC-C-----CcEEEEEcChhhhhhhhhccCC
Q 014919 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL-------VTHCRDSLQLSG-I-----TNGYFIATNATSTFRSIVASYP 297 (416)
Q Consensus 231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~-------~~~a~~~a~~~~-l-----~nv~f~~~Da~~l~~~~~~~~~ 297 (416)
.+.|||.=||-|.-++-+|.. +++|+++|. +..+++++.... . .+++++++|+.+++. .++
T Consensus 76 ~~~VLDaTaGLG~Da~vlA~~--G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~----~~~ 149 (234)
T PF04445_consen 76 RPSVLDATAGLGRDAFVLASL--GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLR----QPD 149 (234)
T ss_dssp ---EEETT-TTSHHHHHHHHH--T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCC----CHS
T ss_pred CCEEEECCCcchHHHHHHHcc--CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHh----hcC
Confidence 468999999999999999975 679999993 345555554322 2 479999999998864 247
Q ss_pred CceeEEEEECCCCCCCC
Q 014919 298 GKLILVSIQCPNPDFNR 314 (416)
Q Consensus 298 ~s~D~v~~~fpdpw~k~ 314 (416)
.++|+|++ ||.|..
T Consensus 150 ~s~DVVY~---DPMFp~ 163 (234)
T PF04445_consen 150 NSFDVVYF---DPMFPE 163 (234)
T ss_dssp S--SEEEE-----S---
T ss_pred CCCCEEEE---CCCCCC
Confidence 89999987 676543
No 270
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=93.72 E-value=0.31 Score=45.57 Aligned_cols=108 Identities=13% Similarity=0.222 Sum_probs=69.2
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhc-cCCCceeEEE----E
Q 014919 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVA-SYPGKLILVS----I 305 (416)
Q Consensus 231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~-~~~~s~D~v~----~ 305 (416)
.-++|||||=+...... ..+-..++.||+... .=.+.++|..+. + +| .+.+.||+|. +
T Consensus 52 ~lrlLEVGals~~N~~s---~~~~fdvt~IDLns~-----------~~~I~qqDFm~r-p--lp~~~~e~FdvIs~SLVL 114 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACS---TSGWFDVTRIDLNSQ-----------HPGILQQDFMER-P--LPKNESEKFDVISLSLVL 114 (219)
T ss_pred cceEEeecccCCCCccc---ccCceeeEEeecCCC-----------CCCceeeccccC-C--CCCCcccceeEEEEEEEE
Confidence 36899999976655443 244557999998431 113457777765 1 12 1357899884 4
Q ss_pred EC-CCCCCCCcchhhhhhhHHHHHHHHhhccCCcE-----EEEEeC-----cHHHHH--HHHHHHHhCCCCce
Q 014919 306 QC-PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGK-----VFLQSD-----IEEVML--RMKQQFLEYGKGKL 365 (416)
Q Consensus 306 ~f-pdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~-----l~l~tD-----~~~~~~--~~~~~~~~~~~~~~ 365 (416)
|| |+| +.| -+.++++++.|+|+|. |++.+. +..|+. ...+.++..||...
T Consensus 115 NfVP~p-------~~R---G~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~~~~~l~~im~~LGf~~~ 177 (219)
T PF11968_consen 115 NFVPDP-------KQR---GEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYMTEERLREIMESLGFTRV 177 (219)
T ss_pred eeCCCH-------HHH---HHHHHHHHHHhCCCCccCcceEEEEeCchHhhcccccCHHHHHHHHHhCCcEEE
Confidence 44 454 122 3789999999999999 888753 334433 44567777787543
No 271
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=93.17 E-value=0.58 Score=47.72 Aligned_cols=116 Identities=14% Similarity=0.194 Sum_probs=76.8
Q ss_pred CCeEEEEeccccHHHHHHHHhCC-CCeEEEEchHHHHHHH----HHHhCCCc--EEEEEcChhhhhhhhhccCCCceeEE
Q 014919 231 QPLVVDIGSGNGLFLLGMARKRK-DLNFLGLELVTHCRDS----LQLSGITN--GYFIATNATSTFRSIVASYPGKLILV 303 (416)
Q Consensus 231 ~~~vLDIGCG~G~~~~~lA~~~p-~~~~iGvD~~~~a~~~----a~~~~l~n--v~f~~~Da~~l~~~~~~~~~~s~D~v 303 (416)
.-++||-=+|+|.=++.+|...+ ...++.-|++..|.+. ++.+++++ +++.+.||..++. .....||.|
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~----~~~~~fD~I 125 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLY----SRQERFDVI 125 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHC----HSTT-EEEE
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhh----hccccCCEE
Confidence 35899999999999999999844 4688999987666544 44567765 8999999998853 136789999
Q ss_pred EEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE-eCcHHHHHHH-HHHHHhCCC
Q 014919 304 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ-SDIEEVMLRM-KQQFLEYGK 362 (416)
Q Consensus 304 ~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~-tD~~~~~~~~-~~~~~~~~~ 362 (416)
-+ ||+= .+ ..||+...+.++.||.|.+. ||...+.-.. ...+..++-
T Consensus 126 Dl---DPfG-Sp--------~pfldsA~~~v~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~ 174 (377)
T PF02005_consen 126 DL---DPFG-SP--------APFLDSALQAVKDGGLLCVTATDTAVLCGSYPEKCFRKYGA 174 (377)
T ss_dssp EE-----SS-----------HHHHHHHHHHEEEEEEEEEEE--HHHHTTSSHHHHHHHHSS
T ss_pred Ee---CCCC-Cc--------cHhHHHHHHHhhcCCEEEEeccccccccCCChhHHHHhcCC
Confidence 77 6752 11 38999999999999999985 7876543222 234455543
No 272
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=93.02 E-value=0.083 Score=43.88 Aligned_cols=39 Identities=26% Similarity=0.514 Sum_probs=28.1
Q ss_pred cccccCCCCCCeEEEEeccccHHHHHHHHhCCCCeEEEEch
Q 014919 222 WSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL 262 (416)
Q Consensus 222 ~~~~f~~~~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~ 262 (416)
|....+....+..+|||||+|-..--|.+. +..=+|+|+
T Consensus 50 W~~~~~~~~~~~FVDlGCGNGLLV~IL~~E--Gy~G~GiD~ 88 (112)
T PF07757_consen 50 WRDMYGEQKFQGFVDLGCGNGLLVYILNSE--GYPGWGIDA 88 (112)
T ss_pred HhcccCCCCCCceEEccCCchHHHHHHHhC--CCCcccccc
Confidence 544443334678999999999887777765 556678885
No 273
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=92.93 E-value=0.33 Score=46.39 Aligned_cols=69 Identities=14% Similarity=0.122 Sum_probs=46.4
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHH----HHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEE
Q 014919 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL----QLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 306 (416)
Q Consensus 231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a----~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~ 306 (416)
..+|+|||||.--+++......|+..|+|+|+.....+-. ...+ .+..+...|...- + +....|+..++
T Consensus 106 p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~-~~~~~~v~Dl~~~-----~-~~~~~DlaLll 178 (251)
T PF07091_consen 106 PDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLG-VPHDARVRDLLSD-----P-PKEPADLALLL 178 (251)
T ss_dssp -SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT--CEEEEEE-TTTS-----H-TTSEESEEEEE
T ss_pred CchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhC-CCcceeEeeeecc-----C-CCCCcchhhHH
Confidence 6899999999999999888888899999999855444332 2233 3566666676543 1 46778988876
No 274
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=92.93 E-value=0.52 Score=43.44 Aligned_cols=105 Identities=16% Similarity=0.106 Sum_probs=65.4
Q ss_pred CCCeEEEEeccccHHHHHHHHh-CCCCeEEEEc---h-----HH--HHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCC
Q 014919 230 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLE---L-----VT--HCRDSLQLSGITNGYFIATNATSTFRSIVASYPG 298 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~-~p~~~~iGvD---~-----~~--~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~ 298 (416)
.+.+|+|+=.|.|.++.-++.. -|.-.|+++= . .. +....+++....|++.+-.+...+ + +++
T Consensus 48 pg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~-----~-~pq 121 (238)
T COG4798 48 PGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVAL-----G-APQ 121 (238)
T ss_pred CCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCccccc-----C-CCC
Confidence 4789999999999999999876 3555677764 1 11 111112234456776666655544 2 356
Q ss_pred ceeEEEEE--CCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919 299 KLILVSIQ--CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 343 (416)
Q Consensus 299 s~D~v~~~--fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~ 343 (416)
..|.++.+ +-|-..+.-|. -+-..+...+++.|||||.+.+.
T Consensus 122 ~~d~~~~~~~yhdmh~k~i~~---~~A~~vna~vf~~LKPGGv~~V~ 165 (238)
T COG4798 122 KLDLVPTAQNYHDMHNKNIHP---ATAAKVNAAVFKALKPGGVYLVE 165 (238)
T ss_pred cccccccchhhhhhhccccCc---chHHHHHHHHHHhcCCCcEEEEE
Confidence 67776542 22322233231 12357788999999999998874
No 275
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=92.87 E-value=0.31 Score=41.77 Aligned_cols=76 Identities=8% Similarity=-0.004 Sum_probs=50.3
Q ss_pred cEEEEEcChhhhhhhhhccCCCceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHH
Q 014919 277 NGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQ 356 (416)
Q Consensus 277 nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~ 356 (416)
++.+..+|+.+.++.. +..+|.+++. ++...+.+ .+-++++++.++++++|||.+.--|- ...+++.
T Consensus 32 ~L~L~~gDa~~~l~~l----~~~~Da~ylD---gFsP~~nP--elWs~e~~~~l~~~~~~~~~l~Tys~----a~~Vr~~ 98 (124)
T PF05430_consen 32 TLTLWFGDAREMLPQL----DARFDAWYLD---GFSPAKNP--ELWSEELFKKLARLSKPGGTLATYSS----AGAVRRA 98 (124)
T ss_dssp EEEEEES-HHHHHHHB-----T-EEEEEE----SS-TTTSG--GGSSHHHHHHHHHHEEEEEEEEES------BHHHHHH
T ss_pred EEEEEEcHHHHHHHhC----cccCCEEEec---CCCCcCCc--ccCCHHHHHHHHHHhCCCcEEEEeec----hHHHHHH
Confidence 4788999998876532 4789999874 43222211 23457999999999999999876443 3347788
Q ss_pred HHhCCCCce
Q 014919 357 FLEYGKGKL 365 (416)
Q Consensus 357 ~~~~~~~~~ 365 (416)
|.+.||.+.
T Consensus 99 L~~aGF~v~ 107 (124)
T PF05430_consen 99 LQQAGFEVE 107 (124)
T ss_dssp HHHCTEEEE
T ss_pred HHHcCCEEE
Confidence 999998754
No 276
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=92.87 E-value=0.54 Score=47.97 Aligned_cols=112 Identities=17% Similarity=0.212 Sum_probs=64.4
Q ss_pred CCeEEEEeccccHHHHHHHH--------h-------CCCCeEEEEch-----HH--HHHHHHHH------h----CCCcE
Q 014919 231 QPLVVDIGSGNGLFLLGMAR--------K-------RKDLNFLGLEL-----VT--HCRDSLQL------S----GITNG 278 (416)
Q Consensus 231 ~~~vLDIGCG~G~~~~~lA~--------~-------~p~~~~iGvD~-----~~--~a~~~a~~------~----~l~nv 278 (416)
.-.|+|+|||+|..++.+.. + .|+.+++--|+ .. +.+....+ . .-.+-
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~ 143 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRS 143 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCc
Confidence 45899999999987755432 1 25678887784 11 11110000 0 00112
Q ss_pred EEEEcChhhhhhhhhccCCCceeEEEEECCCCCCCC-cc----------hhhhh----------------h---hHHHHH
Q 014919 279 YFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNR-PE----------HRWRM----------------V---QRSLVE 328 (416)
Q Consensus 279 ~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdpw~k~-~h----------~krRl----------------~---~~~~l~ 328 (416)
.|+.+=-..+....| ++++++.++..+.-.|..+ +. .|.++ . -..||+
T Consensus 144 ~f~~gvpGSFY~RLf--P~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~ 221 (386)
T PLN02668 144 YFAAGVPGSFYRRLF--PARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLR 221 (386)
T ss_pred eEEEecCcccccccc--CCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445556 5899999998887777532 10 11111 0 135666
Q ss_pred HHHhhccCCcEEEEEe
Q 014919 329 AVSDLLVHDGKVFLQS 344 (416)
Q Consensus 329 ~i~r~LkpgG~l~l~t 344 (416)
.=++-|.|||++++..
T Consensus 222 ~Ra~ELvpGG~mvl~~ 237 (386)
T PLN02668 222 ARAQEMKRGGAMFLVC 237 (386)
T ss_pred HHHHHhccCcEEEEEE
Confidence 6677899999999874
No 277
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=92.40 E-value=0.41 Score=50.01 Aligned_cols=119 Identities=15% Similarity=0.149 Sum_probs=73.8
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHH----HHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTH----CRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 305 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~----a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~ 305 (416)
.-..|+|...|.|.|+.+|... | +.-+-++.. .+.-+-..|+-.+ ..++ -+.|+..+.++|+|+.
T Consensus 365 ~iRNVMDMnAg~GGFAAAL~~~-~---VWVMNVVP~~~~ntL~vIydRGLIG~------yhDW-CE~fsTYPRTYDLlHA 433 (506)
T PF03141_consen 365 RIRNVMDMNAGYGGFAAALIDD-P---VWVMNVVPVSGPNTLPVIYDRGLIGV------YHDW-CEAFSTYPRTYDLLHA 433 (506)
T ss_pred ceeeeeeecccccHHHHHhccC-C---ceEEEecccCCCCcchhhhhcccchh------ccch-hhccCCCCcchhheeh
Confidence 3578999999999999999764 3 222222221 1111112333111 1111 3345667899999986
Q ss_pred ECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCCce
Q 014919 306 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKL 365 (416)
Q Consensus 306 ~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~~~ 365 (416)
..- +..- +.|-.-...|-++-|+|+|+|.+++. |..+..+.+..++....|...
T Consensus 434 ~~l---fs~~--~~rC~~~~illEmDRILRP~G~~iiR-D~~~vl~~v~~i~~~lrW~~~ 487 (506)
T PF03141_consen 434 DGL---FSLY--KDRCEMEDILLEMDRILRPGGWVIIR-DTVDVLEKVKKIAKSLRWEVR 487 (506)
T ss_pred hhh---hhhh--cccccHHHHHHHhHhhcCCCceEEEe-ccHHHHHHHHHHHHhCcceEE
Confidence 522 1111 11122258899999999999999996 677788888888888777643
No 278
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=92.29 E-value=2.2 Score=35.13 Aligned_cols=98 Identities=16% Similarity=0.096 Sum_probs=64.0
Q ss_pred ccccHHHHHHHHhC--CCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCCCCCCCcc
Q 014919 239 SGNGLFLLGMARKR--KDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPE 316 (416)
Q Consensus 239 CG~G~~~~~lA~~~--p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdpw~k~~h 316 (416)
||.|.++..+++.. .+..++.+|......+.+...+ +.++.+|+.+. ..+-...-...+.+++..++. .
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~---~~~i~gd~~~~-~~l~~a~i~~a~~vv~~~~~d-----~ 74 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEG---VEVIYGDATDP-EVLERAGIEKADAVVILTDDD-----E 74 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTT---SEEEES-TTSH-HHHHHTTGGCESEEEEESSSH-----H
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcc---cccccccchhh-hHHhhcCccccCEEEEccCCH-----H
Confidence 77788888888753 2347999998776666666655 67899999874 211111235688888775432 0
Q ss_pred hhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHH
Q 014919 317 HRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVML 351 (416)
Q Consensus 317 ~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~ 351 (416)
..-.+....+.+.|...++...+...+.+
T Consensus 75 ------~n~~~~~~~r~~~~~~~ii~~~~~~~~~~ 103 (116)
T PF02254_consen 75 ------ENLLIALLARELNPDIRIIARVNDPENAE 103 (116)
T ss_dssp ------HHHHHHHHHHHHTTTSEEEEEESSHHHHH
T ss_pred ------HHHHHHHHHHHHCCCCeEEEEECCHHHHH
Confidence 11345566777889999999888877644
No 279
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=91.92 E-value=0.48 Score=41.69 Aligned_cols=104 Identities=14% Similarity=0.136 Sum_probs=54.6
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCCC
Q 014919 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNP 310 (416)
Q Consensus 231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdp 310 (416)
..-|||+|-|+|..--.|-+.+|+..++.+|....+.--+ -.+.=.++.+|+.+.++. .+........++.-+--.
T Consensus 29 ~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~~hp~~---~P~~~~~ilGdi~~tl~~-~~~~g~~a~laHaD~G~g 104 (160)
T PF12692_consen 29 PGPVLELGLGNGRTYDHLREIFPDRRIYVFDRALACHPSS---TPPEEDLILGDIRETLPA-LARFGAGAALAHADIGTG 104 (160)
T ss_dssp -S-EEEE--TTSHHHHHHHHH--SS-EEEEESS--S-GGG------GGGEEES-HHHHHHH-HHHH-S-EEEEEE----S
T ss_pred CCceEEeccCCCccHHHHHHhCCCCeEEEEeeecccCCCC---CCchHheeeccHHHHhHH-HHhcCCceEEEEeecCCC
Confidence 4679999999999999999999999999999633222111 112235789999988764 211234555555442111
Q ss_pred CCCCcchhhhhhhHHHHHHHHhhccCCcEEEE
Q 014919 311 DFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 342 (416)
Q Consensus 311 w~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l 342 (416)
.+ .|.-..-..+-..+..+|.|||.++-
T Consensus 105 ---~~-~~d~a~a~~lspli~~~la~gGi~vS 132 (160)
T PF12692_consen 105 ---DK-EKDDATAAWLSPLIAPVLAPGGIMVS 132 (160)
T ss_dssp ----H-HHHHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred ---Cc-chhHHHHHhhhHHHHHHhcCCcEEEe
Confidence 00 11111112334567889999998763
No 280
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=91.83 E-value=0.51 Score=39.67 Aligned_cols=86 Identities=13% Similarity=0.137 Sum_probs=59.9
Q ss_pred cccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChh---hhhhhhhccCCCceeEEEEECCCCCCCCcc
Q 014919 240 GNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNAT---STFRSIVASYPGKLILVSIQCPNPDFNRPE 316 (416)
Q Consensus 240 G~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~---~l~~~~~~~~~~s~D~v~~~fpdpw~k~~h 316 (416)
|.|..++.+|+... .+++++|.++.-++.+++.|.+.+ +..+-. +-+.+.. ....+|.++-.-..
T Consensus 1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~~Ga~~~--~~~~~~~~~~~i~~~~--~~~~~d~vid~~g~------- 68 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG-AKVIATDRSEEKLELAKELGADHV--IDYSDDDFVEQIRELT--GGRGVDVVIDCVGS------- 68 (130)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHHTTESEE--EETTTSSHHHHHHHHT--TTSSEEEEEESSSS-------
T ss_pred ChHHHHHHHHHHcC-CEEEEEECCHHHHHHHHhhccccc--cccccccccccccccc--ccccceEEEEecCc-------
Confidence 56889999999987 999999988777777777775432 233222 2223333 23479988654221
Q ss_pred hhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919 317 HRWRMVQRSLVEAVSDLLVHDGKVFLQS 344 (416)
Q Consensus 317 ~krRl~~~~~l~~i~r~LkpgG~l~l~t 344 (416)
+..++....+|+|+|++.+..
T Consensus 69 -------~~~~~~~~~~l~~~G~~v~vg 89 (130)
T PF00107_consen 69 -------GDTLQEAIKLLRPGGRIVVVG 89 (130)
T ss_dssp -------HHHHHHHHHHEEEEEEEEEES
T ss_pred -------HHHHHHHHHHhccCCEEEEEE
Confidence 377889999999999999864
No 281
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=91.65 E-value=1.2 Score=45.13 Aligned_cols=114 Identities=12% Similarity=0.081 Sum_probs=63.2
Q ss_pred CCCeEEEEeccc-cHHHHHHHHhCCCCeEEEEchHHHHHHHHHHh-CCCcEEEEEcC-hhhhhhhhhccCCCceeEEEEE
Q 014919 230 AQPLVVDIGSGN-GLFLLGMARKRKDLNFLGLELVTHCRDSLQLS-GITNGYFIATN-ATSTFRSIVASYPGKLILVSIQ 306 (416)
Q Consensus 230 ~~~~vLDIGCG~-G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~-~l~nv~f~~~D-a~~l~~~~~~~~~~s~D~v~~~ 306 (416)
.+..||.+|||. |..+..+|+.....+++++|....-.+.+++. +...+.+...+ ...-+.... ....+|.++-.
T Consensus 184 ~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~--~~~~~D~vld~ 261 (386)
T cd08283 184 PGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGAETINFEEVDDVVEALRELT--GGRGPDVCIDA 261 (386)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHHc--CCCCCCEEEEC
Confidence 367899999998 99999999998655699999765555555554 33212222221 111111111 23358877532
Q ss_pred CC-----CCCCCCcchh--hhhhhHHHHHHHHhhccCCcEEEEEeC
Q 014919 307 CP-----NPDFNRPEHR--WRMVQRSLVEAVSDLLVHDGKVFLQSD 345 (416)
Q Consensus 307 fp-----dpw~k~~h~k--rRl~~~~~l~~i~r~LkpgG~l~l~tD 345 (416)
.. .+|.+-..+. .+--....+++..+.|+++|++.+...
T Consensus 262 vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g~ 307 (386)
T cd08283 262 VGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIGV 307 (386)
T ss_pred CCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEcC
Confidence 11 1111100000 000013567888999999999987643
No 282
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=91.47 E-value=0.59 Score=46.82 Aligned_cols=90 Identities=13% Similarity=0.166 Sum_probs=62.4
Q ss_pred CCeEEEEecc-ccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEc-ChhhhhhhhhccCCCceeEEEEECC
Q 014919 231 QPLVVDIGSG-NGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIAT-NATSTFRSIVASYPGKLILVSIQCP 308 (416)
Q Consensus 231 ~~~vLDIGCG-~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~-Da~~l~~~~~~~~~~s~D~v~~~fp 308 (416)
+..|+=+|+| -|..++.+|+..- ++++++|.+..-++.+++.|.+. ++.. |.... ... .+.+|.++..-+
T Consensus 167 G~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGAd~--~i~~~~~~~~-~~~----~~~~d~ii~tv~ 238 (339)
T COG1064 167 GKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGADH--VINSSDSDAL-EAV----KEIADAIIDTVG 238 (339)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCCcE--EEEcCCchhh-HHh----HhhCcEEEECCC
Confidence 5666666665 6778899999764 99999999888777777777653 3332 22222 111 234898876543
Q ss_pred CCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919 309 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 343 (416)
Q Consensus 309 dpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~ 343 (416)
+ ..++.+.+.|++||++.+.
T Consensus 239 -~--------------~~~~~~l~~l~~~G~~v~v 258 (339)
T COG1064 239 -P--------------ATLEPSLKALRRGGTLVLV 258 (339)
T ss_pred -h--------------hhHHHHHHHHhcCCEEEEE
Confidence 3 4578889999999999886
No 283
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=91.34 E-value=1.7 Score=43.80 Aligned_cols=103 Identities=13% Similarity=0.159 Sum_probs=80.4
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHH----hCCCcEEEEEcChhhhhhhhhccCCCceeEEEEE
Q 014919 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL----SGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 306 (416)
Q Consensus 231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~----~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~ 306 (416)
..+|+|-=||+|.=++.+|..-+...++.-|++..|.+.+++ +...+...+..|+..++.+ ....||.|-+
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~----~~~~fd~IDi- 127 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHE----LHRAFDVIDI- 127 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHh----cCCCccEEec-
Confidence 578999999999999999999887799999998877665543 3355677778999988643 2367898866
Q ss_pred CCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE-eCcHHH
Q 014919 307 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ-SDIEEV 349 (416)
Q Consensus 307 fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~-tD~~~~ 349 (416)
||+= .+ ..|++...+..+.||.+.+. ||...+
T Consensus 128 --DPFG-SP--------aPFlDaA~~s~~~~G~l~vTATD~a~L 160 (380)
T COG1867 128 --DPFG-SP--------APFLDAALRSVRRGGLLCVTATDTAPL 160 (380)
T ss_pred --CCCC-CC--------chHHHHHHHHhhcCCEEEEEecccccc
Confidence 6652 11 28999999999999999985 776544
No 284
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=91.12 E-value=0.59 Score=43.11 Aligned_cols=101 Identities=19% Similarity=0.274 Sum_probs=61.0
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHH----HHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDS----LQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 305 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~----a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~ 305 (416)
.+.+|||+|.|+|--.+.-|+.- ...++..|+...+.+. ++.++ -++.|...|..- .+..+|++..
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aG-A~~v~a~d~~P~~~~ai~lNa~ang-v~i~~~~~d~~g--------~~~~~Dl~La 148 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAG-AAEVVAADIDPWLEQAIRLNAAANG-VSILFTHADLIG--------SPPAFDLLLA 148 (218)
T ss_pred ccceeeecccccChHHHHHHHhh-hHHHHhcCCChHHHHHhhcchhhcc-ceeEEeeccccC--------CCcceeEEEe
Confidence 36899999999999988877763 4567888864333332 33333 468888877643 3678999875
Q ss_pred ECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcE-EEEEeCcHHH
Q 014919 306 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGK-VFLQSDIEEV 349 (416)
Q Consensus 306 ~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~-l~l~tD~~~~ 349 (416)
. |-.+.... ...++. +.+.|+..|. +++-+.+..|
T Consensus 149 g--Dlfy~~~~------a~~l~~-~~~~l~~~g~~vlvgdp~R~~ 184 (218)
T COG3897 149 G--DLFYNHTE------ADRLIP-WKDRLAEAGAAVLVGDPGRAY 184 (218)
T ss_pred e--ceecCchH------HHHHHH-HHHHHHhCCCEEEEeCCCCCC
Confidence 4 43332221 124555 5555555554 4444445444
No 285
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=90.83 E-value=1 Score=44.58 Aligned_cols=75 Identities=13% Similarity=0.017 Sum_probs=52.3
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhC---CCcEEEEEcChhhhhhhhhc-c-CCCceeEEE
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSG---ITNGYFIATNATSTFRSIVA-S-YPGKLILVS 304 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~---l~nv~f~~~Da~~l~~~~~~-~-~~~s~D~v~ 304 (416)
.+.++||-=.|.|.++..+.++.|+..++|+|....|++.+.+.- -+++.+++++..++. +.+. . ....+|.|.
T Consensus 20 ~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~l~-~~l~~~~~~~~~dgiL 98 (310)
T PF01795_consen 20 PGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSNLD-EYLKELNGINKVDGIL 98 (310)
T ss_dssp TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGGHH-HHHHHTTTTS-EEEEE
T ss_pred CCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHHHH-HHHHHccCCCccCEEE
Confidence 467999999999999999999999999999998888887665321 357999999998873 3322 1 235788886
Q ss_pred E
Q 014919 305 I 305 (416)
Q Consensus 305 ~ 305 (416)
+
T Consensus 99 ~ 99 (310)
T PF01795_consen 99 F 99 (310)
T ss_dssp E
T ss_pred E
Confidence 4
No 286
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=90.74 E-value=2.3 Score=41.42 Aligned_cols=123 Identities=15% Similarity=0.081 Sum_probs=66.2
Q ss_pred CCCeEEEEeccccHHHHHHHHhCC-CCeEEEEchHHHHHHHHHH--hCCCcEEEEEcChhhhhhhhhccCCCceeEEEEE
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLELVTHCRDSLQL--SGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 306 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p-~~~~iGvD~~~~a~~~a~~--~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~ 306 (416)
....|||+|||.|..+.+....+| -.+++.+|.+..+++.++. ....+..-.. ....+..+..+ -..-|+|++.
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~-~~~~~~~~~~~--~~~~DLvi~s 109 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAE-WRRVLYRDFLP--FPPDDLVIAS 109 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccch-hhhhhhccccc--CCCCcEEEEe
Confidence 467899999999998888877776 3479999977666554332 1112111100 00001011111 1223998877
Q ss_pred CCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe-Cc---HHHHHHHHHHHHhCCCC
Q 014919 307 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS-DI---EEVMLRMKQQFLEYGKG 363 (416)
Q Consensus 307 fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t-D~---~~~~~~~~~~~~~~~~~ 363 (416)
|.---... ..| ..+++.+.+.+.+ .|++.- -. ......+++.+.+.++.
T Consensus 110 ~~L~EL~~---~~r---~~lv~~LW~~~~~--~LVlVEpGt~~Gf~~i~~aR~~l~~~~~~ 162 (274)
T PF09243_consen 110 YVLNELPS---AAR---AELVRSLWNKTAP--VLVLVEPGTPAGFRRIAEARDQLLEKGAH 162 (274)
T ss_pred hhhhcCCc---hHH---HHHHHHHHHhccC--cEEEEcCCChHHHHHHHHHHHHHhhCCCc
Confidence 64322211 112 3677777777766 555542 12 22344556677666654
No 287
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=89.87 E-value=2.7 Score=40.31 Aligned_cols=106 Identities=21% Similarity=0.241 Sum_probs=62.6
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEch--HHHHHHHH-H-----HhCCC-cEE---EEEcChhhhhhhhhccCCC
Q 014919 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL--VTHCRDSL-Q-----LSGIT-NGY---FIATNATSTFRSIVASYPG 298 (416)
Q Consensus 231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~--~~~a~~~a-~-----~~~l~-nv~---f~~~Da~~l~~~~~~~~~~ 298 (416)
...+||+|.|+|--++..|.. ...+|+--|. +...++.. . .+++. ++. +..+++... .... +.
T Consensus 87 ~~~vlELGsGtglvG~~aa~~-~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~-~~~~---~~ 161 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALL-LGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDV-SFRL---PN 161 (248)
T ss_pred ceeEEEecCCccHHHHHHHHH-hcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccH-hhcc---CC
Confidence 568999999999666666654 4678888884 11122111 1 11111 221 223333322 1122 12
Q ss_pred ceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHH
Q 014919 299 KLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEV 349 (416)
Q Consensus 299 s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~ 349 (416)
.+|.|... |+|....+. +.++..++..|..++.+++.+.-.+-
T Consensus 162 ~~Dlilas--Dvvy~~~~~------e~Lv~tla~ll~~~~~i~l~~~lr~~ 204 (248)
T KOG2793|consen 162 PFDLILAS--DVVYEEESF------EGLVKTLAFLLAKDGTIFLAYPLRRD 204 (248)
T ss_pred cccEEEEe--eeeecCCcc------hhHHHHHHHHHhcCCeEEEEEecccc
Confidence 28988876 777655433 47888899999999999888865553
No 288
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=89.81 E-value=3.8 Score=41.33 Aligned_cols=114 Identities=15% Similarity=0.098 Sum_probs=69.7
Q ss_pred CCCeEEEEeccccHHHHHHHHh-CCC---CeEEEEchHH----HHHHHHHHhCCCcEEEEEcChhhhhhhh-h----ccC
Q 014919 230 AQPLVVDIGSGNGLFLLGMARK-RKD---LNFLGLELVT----HCRDSLQLSGITNGYFIATNATSTFRSI-V----ASY 296 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~-~p~---~~~iGvD~~~----~a~~~a~~~~l~nv~f~~~Da~~l~~~~-~----~~~ 296 (416)
.+.+|||++...|.-+..|.+. +++ -.+++=|... ..++......-.|+.+...|+..+ +.. . +..
T Consensus 155 p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~-p~~~~~~~~~~~ 233 (375)
T KOG2198|consen 155 PGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLF-PNIYLKDGNDKE 233 (375)
T ss_pred CCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceec-cccccccCchhh
Confidence 3789999999999999888775 322 2688888522 112222233345666666666654 211 1 112
Q ss_pred CCceeEEEEECC---CCCCCCc-------chhhh-----hhhHHHHHHHHhhccCCcEEEEEe
Q 014919 297 PGKLILVSIQCP---NPDFNRP-------EHRWR-----MVQRSLVEAVSDLLVHDGKVFLQS 344 (416)
Q Consensus 297 ~~s~D~v~~~fp---dpw~k~~-------h~krR-----l~~~~~l~~i~r~LkpgG~l~l~t 344 (416)
...||.|.+--| |.|+.+. ..+.| .+|-.+|..-.+.||+||++.-+|
T Consensus 234 ~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYST 296 (375)
T KOG2198|consen 234 QLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYST 296 (375)
T ss_pred hhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEec
Confidence 245888876532 3332211 11112 246688999999999999999987
No 289
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=88.04 E-value=1.9 Score=41.42 Aligned_cols=99 Identities=14% Similarity=0.152 Sum_probs=56.7
Q ss_pred CCeEEEEeccccHHHHHHHHh-----CCCCeEEEEch--------H------------------HHHHHHHH----HhCC
Q 014919 231 QPLVVDIGSGNGLFLLGMARK-----RKDLNFLGLEL--------V------------------THCRDSLQ----LSGI 275 (416)
Q Consensus 231 ~~~vLDIGCG~G~~~~~lA~~-----~p~~~~iGvD~--------~------------------~~a~~~a~----~~~l 275 (416)
...++|.||=.|..++.++.. .++.++++.|. . ....+..+ +.++
T Consensus 75 pGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~gl 154 (248)
T PF05711_consen 75 PGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYGL 154 (248)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTTT
T ss_pred CeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcCC
Confidence 578999999999887665432 35778999992 0 00122222 2233
Q ss_pred --CcEEEEEcChhhhhhhhhccCCCceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEE
Q 014919 276 --TNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 342 (416)
Q Consensus 276 --~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l 342 (416)
+|++|+.+...+.++.. +...+.++++-. |-+ . -....|+.++..|.|||.+++
T Consensus 155 ~~~~v~~vkG~F~dTLp~~---p~~~IAll~lD~-DlY--e-------sT~~aLe~lyprl~~GGiIi~ 210 (248)
T PF05711_consen 155 LDDNVRFVKGWFPDTLPDA---PIERIALLHLDC-DLY--E-------STKDALEFLYPRLSPGGIIIF 210 (248)
T ss_dssp SSTTEEEEES-HHHHCCC----TT--EEEEEE----SH--H-------HHHHHHHHHGGGEEEEEEEEE
T ss_pred CcccEEEECCcchhhhccC---CCccEEEEEEec-cch--H-------HHHHHHHHHHhhcCCCeEEEE
Confidence 58999999998765421 245566565532 211 0 013779999999999999998
No 290
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=86.40 E-value=3.4 Score=43.66 Aligned_cols=114 Identities=18% Similarity=0.133 Sum_probs=67.7
Q ss_pred CCeEEEEeccccHHHHHHHHhCC----CCeEEEEchHHHHH----HHHHHhCCC-cEEEEEcChhhhhhhhh--ccCCCc
Q 014919 231 QPLVVDIGSGNGLFLLGMARKRK----DLNFLGLELVTHCR----DSLQLSGIT-NGYFIATNATSTFRSIV--ASYPGK 299 (416)
Q Consensus 231 ~~~vLDIGCG~G~~~~~lA~~~p----~~~~iGvD~~~~a~----~~a~~~~l~-nv~f~~~Da~~l~~~~~--~~~~~s 299 (416)
..+|.|-.||+|.++...++... +..++|.|+..... .+.--++.. ++....+|...- + .. ....+.
T Consensus 187 ~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~-~-~~~~~~~~~~ 264 (489)
T COG0286 187 RNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLSN-P-KHDDKDDKGK 264 (489)
T ss_pred CCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccccC-C-cccccCCccc
Confidence 45899999999999888776542 37899999644333 333345555 455555554332 1 11 002356
Q ss_pred eeEEEEECCCC---CCCCc----chhhhh---------hh-HHHHHHHHhhccCCcEEEEEeCc
Q 014919 300 LILVSIQCPNP---DFNRP----EHRWRM---------VQ-RSLVEAVSDLLVHDGKVFLQSDI 346 (416)
Q Consensus 300 ~D~v~~~fpdp---w~k~~----h~krRl---------~~-~~~l~~i~r~LkpgG~l~l~tD~ 346 (416)
||.|..|-|.. |-... ...++. -. ..|++.+...|+|||+..+....
T Consensus 265 ~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~~ 328 (489)
T COG0286 265 FDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLPD 328 (489)
T ss_pred eeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEecC
Confidence 99998874332 22110 000000 01 58999999999999876665433
No 291
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=85.49 E-value=5.3 Score=38.18 Aligned_cols=101 Identities=15% Similarity=0.172 Sum_probs=67.1
Q ss_pred CCeEEEEeccccHHHHHHHHh-CCCCeEEEEchHHHHHHHH-H-HhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEEC
Q 014919 231 QPLVVDIGSGNGLFLLGMARK-RKDLNFLGLELVTHCRDSL-Q-LSGITNGYFIATNATSTFRSIVASYPGKLILVSIQC 307 (416)
Q Consensus 231 ~~~vLDIGCG~G~~~~~lA~~-~p~~~~iGvD~~~~a~~~a-~-~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~f 307 (416)
+..||=+|.++|......+.- -|+--+++||.+..+-+.+ . ...-+||--+..||+.-....+ .-+-+|+||...
T Consensus 157 GsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiEDArhP~KYRm--lVgmVDvIFaDv 234 (317)
T KOG1596|consen 157 GSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIEDARHPAKYRM--LVGMVDVIFADV 234 (317)
T ss_pred CceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeeeccCCCchheee--eeeeEEEEeccC
Confidence 789999999999998888775 5888999999754332211 1 2345799999999986411111 134688887654
Q ss_pred CCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919 308 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 343 (416)
Q Consensus 308 pdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~ 343 (416)
+.|- .-|+ +.-.....||+||.+.++
T Consensus 235 aqpd------q~Ri----vaLNA~~FLk~gGhfvis 260 (317)
T KOG1596|consen 235 AQPD------QARI----VALNAQYFLKNGGHFVIS 260 (317)
T ss_pred CCch------hhhh----hhhhhhhhhccCCeEEEE
Confidence 4441 1122 233466789999998875
No 292
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=85.08 E-value=5.9 Score=39.07 Aligned_cols=74 Identities=14% Similarity=0.047 Sum_probs=54.5
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCC-eEEEEchHHHHHHHHHHhC---CCcEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919 231 QPLVVDIGSGNGLFLLGMARKRKDL-NFLGLELVTHCRDSLQLSG---ITNGYFIATNATSTFRSIVASYPGKLILVS 304 (416)
Q Consensus 231 ~~~vLDIGCG~G~~~~~lA~~~p~~-~~iGvD~~~~a~~~a~~~~---l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~ 304 (416)
..+++|.=.|.|.++..+.++.|+. +++|+|....|++.+++.- -.++.+++++..++....-....+.+|.|.
T Consensus 24 ~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~l~~~l~~~~i~~vDGiL 101 (314)
T COG0275 24 DGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFANLAEALKELGIGKVDGIL 101 (314)
T ss_pred CcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHHHHHHHHhcCCCceeEEE
Confidence 5899999999999999999998865 5999998777776665422 258999999998873221111235677764
No 293
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=84.57 E-value=5.8 Score=39.81 Aligned_cols=109 Identities=17% Similarity=0.211 Sum_probs=55.7
Q ss_pred CCCeEEEEeccccHHHHHHHHh----------------CCCCeEEEEch-----H------HHHHHHHHHhCCCcEEEEE
Q 014919 230 AQPLVVDIGSGNGLFLLGMARK----------------RKDLNFLGLEL-----V------THCRDSLQLSGITNGYFIA 282 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~----------------~p~~~~iGvD~-----~------~~a~~~a~~~~l~nv~f~~ 282 (416)
..-+|+|+||..|..++.+... -|+.+++--|+ . ..-.+.... ..++ |..
T Consensus 16 ~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~--~~~~-f~~ 92 (334)
T PF03492_consen 16 KPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKK--FRNY-FVS 92 (334)
T ss_dssp TEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHH--TTSE-EEE
T ss_pred CceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCC--CceE-EEE
Confidence 3568999999999998876542 13457777773 1 111111111 2232 333
Q ss_pred cChhhhhhhhhccCCCceeEEEEECCCCCCCC-cc----------hhhhh---------h-----------hHHHHHHHH
Q 014919 283 TNATSTFRSIVASYPGKLILVSIQCPNPDFNR-PE----------HRWRM---------V-----------QRSLVEAVS 331 (416)
Q Consensus 283 ~Da~~l~~~~~~~~~~s~D~v~~~fpdpw~k~-~h----------~krRl---------~-----------~~~~l~~i~ 331 (416)
+=-..+....| +++|+|.++..+.-.|..+ +. +|.++ + -..||+.=+
T Consensus 93 gvpgSFy~rLf--P~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra 170 (334)
T PF03492_consen 93 GVPGSFYGRLF--PSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARA 170 (334)
T ss_dssp EEES-TTS--S---TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecCchhhhccC--CCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 32233334456 5899999998887777432 00 11111 1 124566667
Q ss_pred hhccCCcEEEEE
Q 014919 332 DLLVHDGKVFLQ 343 (416)
Q Consensus 332 r~LkpgG~l~l~ 343 (416)
+-|+|||++++.
T Consensus 171 ~ELv~GG~mvl~ 182 (334)
T PF03492_consen 171 EELVPGGRMVLT 182 (334)
T ss_dssp HHEEEEEEEEEE
T ss_pred heeccCcEEEEE
Confidence 789999999886
No 294
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=83.98 E-value=1.7 Score=45.30 Aligned_cols=105 Identities=13% Similarity=0.178 Sum_probs=75.8
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCC-eEEEEchHHHHHHH----HHHhCCCc-EEEEEcChhhhhhhhhccCCCceeEE
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRKDL-NFLGLELVTHCRDS----LQLSGITN-GYFIATNATSTFRSIVASYPGKLILV 303 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p~~-~~iGvD~~~~a~~~----a~~~~l~n-v~f~~~Da~~l~~~~~~~~~~s~D~v 303 (416)
+..+|||.=|++|.-++..|+..|+. .+++-|.+.++.+. ++.++.++ |...+.|+..++-.. +-....||+|
T Consensus 109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~-~~~~~~FDvI 187 (525)
T KOG1253|consen 109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEH-PMVAKFFDVI 187 (525)
T ss_pred CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhc-cccccccceE
Confidence 35789999999999999999998874 67788876665543 33344443 677788887764211 1124689999
Q ss_pred EEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE-eCcH
Q 014919 304 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ-SDIE 347 (416)
Q Consensus 304 ~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~-tD~~ 347 (416)
-+ ||+=.. ..||+...+.++.||.|.+. ||..
T Consensus 188 DL---DPyGs~---------s~FLDsAvqav~~gGLL~vT~TD~a 220 (525)
T KOG1253|consen 188 DL---DPYGSP---------SPFLDSAVQAVRDGGLLCVTCTDMA 220 (525)
T ss_pred ec---CCCCCc---------cHHHHHHHHHhhcCCEEEEEecchH
Confidence 76 776222 38999999999999999985 6654
No 295
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=83.80 E-value=2 Score=42.50 Aligned_cols=31 Identities=19% Similarity=0.179 Sum_probs=25.2
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEch
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL 262 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~ 262 (416)
....||==|||.|+++..||...+.+ -|=|.
T Consensus 150 ~ki~iLvPGaGlGRLa~dla~~G~~~--qGNEf 180 (369)
T KOG2798|consen 150 TKIRILVPGAGLGRLAYDLACLGFKC--QGNEF 180 (369)
T ss_pred cCceEEecCCCchhHHHHHHHhcccc--cccHH
Confidence 36889999999999999999997654 45574
No 296
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=82.70 E-value=11 Score=36.79 Aligned_cols=95 Identities=12% Similarity=0.101 Sum_probs=58.1
Q ss_pred CCeEEEEecc-ccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEc-ChhhhhhhhhccCCCceeEEEEECC
Q 014919 231 QPLVVDIGSG-NGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIAT-NATSTFRSIVASYPGKLILVSIQCP 308 (416)
Q Consensus 231 ~~~vLDIGCG-~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~-Da~~l~~~~~~~~~~s~D~v~~~fp 308 (416)
+..+|..||| .|..++.+|+.. +.+++.++.+..-.+.++..+.+.+...+. +..+.+ ... ....+|.++-. .
T Consensus 166 ~~~vli~g~g~vG~~~~~la~~~-G~~V~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~--~~~~~D~vid~-~ 240 (338)
T cd08254 166 GETVLVIGLGGLGLNAVQIAKAM-GAAVIAVDIKEEKLELAKELGADEVLNSLDDSPKDKK-AAG--LGGGFDVIFDF-V 240 (338)
T ss_pred CCEEEEECCcHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHhCCCEEEcCCCcCHHHHH-HHh--cCCCceEEEEC-C
Confidence 5677778887 488888899876 567899987655555555556543221111 111111 111 34568877532 1
Q ss_pred CCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919 309 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 343 (416)
Q Consensus 309 dpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~ 343 (416)
.. ...+++..+.|+++|++...
T Consensus 241 g~-------------~~~~~~~~~~l~~~G~~v~~ 262 (338)
T cd08254 241 GT-------------QPTFEDAQKAVKPGGRIVVV 262 (338)
T ss_pred CC-------------HHHHHHHHHHhhcCCEEEEE
Confidence 11 25678889999999998864
No 297
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=81.88 E-value=20 Score=34.60 Aligned_cols=110 Identities=10% Similarity=0.041 Sum_probs=65.5
Q ss_pred CCeEEEEeccccHHHHHHHHhCCC----CeEEEEchHHHHHH-----HHHHhCCCcEEEEEcChhhhhhhhhccCCCcee
Q 014919 231 QPLVVDIGSGNGLFLLGMARKRKD----LNFLGLELVTHCRD-----SLQLSGITNGYFIATNATSTFRSIVASYPGKLI 301 (416)
Q Consensus 231 ~~~vLDIGCG~G~~~~~lA~~~p~----~~~iGvD~~~~a~~-----~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D 301 (416)
....+|+|.|+-.-+..|...+.. ..|+.+|+++..++ .+.+...-.+.-+++|...-+.+ .++.=.
T Consensus 79 ~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~----~~~~~~ 154 (321)
T COG4301 79 ACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAE----LPRGGR 154 (321)
T ss_pred cceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhc----ccCCCe
Confidence 578999999999887776655443 78999997543322 22222111366677777654322 122223
Q ss_pred EEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHH
Q 014919 302 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEE 348 (416)
Q Consensus 302 ~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~ 348 (416)
.++++ +-.-..+-.+.. ...||..+...|+||-++.+-+|...
T Consensus 155 Rl~~f-lGStlGN~tp~e---~~~Fl~~l~~a~~pGd~~LlGvDl~k 197 (321)
T COG4301 155 RLFVF-LGSTLGNLTPGE---CAVFLTQLRGALRPGDYFLLGVDLRK 197 (321)
T ss_pred EEEEE-ecccccCCChHH---HHHHHHHHHhcCCCcceEEEeccccC
Confidence 34332 211111111111 14899999999999999999887643
No 298
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=80.10 E-value=2.4 Score=41.06 Aligned_cols=59 Identities=10% Similarity=0.145 Sum_probs=40.7
Q ss_pred CCCeEEEEeccccHHHHHHHHhC-----CCCeEEEEch-HHH--HHHHHHHhCC-CcEEEEEcChhhh
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKR-----KDLNFLGLEL-VTH--CRDSLQLSGI-TNGYFIATNATST 288 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~-----p~~~~iGvD~-~~~--a~~~a~~~~l-~nv~f~~~Da~~l 288 (416)
+...++|+|||.|.++..+++.. +...|+-||. +.+ +-.+...... ..++=++.|+.++
T Consensus 18 ~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~K~D~~~~~~~~~~~~~R~riDI~dl 85 (259)
T PF05206_consen 18 PDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRHKADNKIRKDESEPKFERLRIDIKDL 85 (259)
T ss_pred CCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccccchhhhhccCCCCceEEEEEEeecc
Confidence 35799999999999999999987 5679999995 211 1111111111 3566777888776
No 299
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=79.98 E-value=12 Score=37.58 Aligned_cols=97 Identities=13% Similarity=0.092 Sum_probs=63.6
Q ss_pred CCeEEEEeccc-cHHHHHHHHhCCCCeEEEEchHHHHHHHHHH-hCCCcEEEEEc-ChhhhhhhhhccCCCceeEEEEEC
Q 014919 231 QPLVVDIGSGN-GLFLLGMARKRKDLNFLGLELVTHCRDSLQL-SGITNGYFIAT-NATSTFRSIVASYPGKLILVSIQC 307 (416)
Q Consensus 231 ~~~vLDIGCG~-G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~-~~l~nv~f~~~-Da~~l~~~~~~~~~~s~D~v~~~f 307 (416)
...++=+|||. |..+..+|+.....+++.+|.+..-++.+++ .+.+-+..... +......... ...-+|.++-.-
T Consensus 169 ~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t--~g~g~D~vie~~ 246 (350)
T COG1063 169 GGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELT--GGRGADVVIEAV 246 (350)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHh--CCCCCCEEEECC
Confidence 34899999997 7777889999999999999987766666655 33332222222 2211111111 123588886532
Q ss_pred CCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919 308 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 343 (416)
Q Consensus 308 pdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~ 343 (416)
.. +..++...+.++|+|.+.+.
T Consensus 247 G~--------------~~~~~~ai~~~r~gG~v~~v 268 (350)
T COG1063 247 GS--------------PPALDQALEALRPGGTVVVV 268 (350)
T ss_pred CC--------------HHHHHHHHHHhcCCCEEEEE
Confidence 11 36788999999999999886
No 300
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=78.77 E-value=4.8 Score=39.11 Aligned_cols=123 Identities=15% Similarity=0.133 Sum_probs=73.4
Q ss_pred eEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCCCCC
Q 014919 233 LVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDF 312 (416)
Q Consensus 233 ~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdpw~ 312 (416)
+++|+-||.|.+...+.+.. -..++++|+...|.+..+.+- ++. ++++|+.++....+ ...+|+++..+|=.-+
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G-~~~v~a~e~~~~a~~~~~~N~-~~~-~~~~Di~~~~~~~~---~~~~D~l~~gpPCq~f 75 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAG-FEIVAANEIDKSAAETYEANF-PNK-LIEGDITKIDEKDF---IPDIDLLTGGFPCQPF 75 (275)
T ss_pred cEEEEccCcchHHHHHHHcC-CEEEEEEeCCHHHHHHHHHhC-CCC-CccCccccCchhhc---CCCCCEEEeCCCChhh
Confidence 48999999999988887763 235788999888877665442 333 67788888732111 3469999887542211
Q ss_pred CC-c------chhhhhhhHHHHHHHHhhccCCcEEEEE-------eCcHHHHHHHHHHHHhCCCCc
Q 014919 313 NR-P------EHRWRMVQRSLVEAVSDLLVHDGKVFLQ-------SDIEEVMLRMKQQFLEYGKGK 364 (416)
Q Consensus 313 k~-~------h~krRl~~~~~l~~i~r~LkpgG~l~l~-------tD~~~~~~~~~~~~~~~~~~~ 364 (416)
.. . +.+..++ ..+++ +.+.++|- .+++. .+....+..+++.|++.|+..
T Consensus 76 S~ag~~~~~~d~r~~L~-~~~~~-~i~~~~P~-~~v~ENV~g~~~~~~~~~~~~i~~~l~~~GY~~ 138 (275)
T cd00315 76 SIAGKRKGFEDTRGTLF-FEIIR-ILKEKKPK-YFLLENVKGLLTHDNGNTLKVILNTLEELGYNV 138 (275)
T ss_pred hHHhhcCCCCCchHHHH-HHHHH-HHHhcCCC-EEEEEcCcchhccCchHHHHHHHHHHHhCCcEE
Confidence 11 1 1111222 24443 33344665 33332 223456777888888888653
No 301
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=77.82 E-value=14 Score=36.61 Aligned_cols=94 Identities=10% Similarity=0.026 Sum_probs=56.1
Q ss_pred CCeEEEEeccc-cHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEE-EEEcChhhhhhhhhccCCCceeEEEEECC
Q 014919 231 QPLVVDIGSGN-GLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGY-FIATNATSTFRSIVASYPGKLILVSIQCP 308 (416)
Q Consensus 231 ~~~vLDIGCG~-G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~-f~~~Da~~l~~~~~~~~~~s~D~v~~~fp 308 (416)
+..||=+|||. |..++.+|+.....+++++|....-++.+++.|.+.+- .-..+..++ .. ..+.+|.++-...
T Consensus 170 g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~----~~-~~g~~D~vid~~G 244 (343)
T PRK09880 170 GKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHY----KA-EKGYFDVSFEVSG 244 (343)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHH----hc-cCCCCCEEEECCC
Confidence 56777788763 55566777776434789999876666666666654321 111122222 11 1234787754311
Q ss_pred CCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919 309 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 343 (416)
Q Consensus 309 dpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~ 343 (416)
. +..++...+.|++||++.+.
T Consensus 245 ~--------------~~~~~~~~~~l~~~G~iv~~ 265 (343)
T PRK09880 245 H--------------PSSINTCLEVTRAKGVMVQV 265 (343)
T ss_pred C--------------HHHHHHHHHHhhcCCEEEEE
Confidence 1 25677888999999998875
No 302
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=76.97 E-value=19 Score=33.35 Aligned_cols=98 Identities=14% Similarity=0.145 Sum_probs=58.4
Q ss_pred CCCeEEEEeccc-cHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECC
Q 014919 230 AQPLVVDIGSGN-GLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP 308 (416)
Q Consensus 230 ~~~~vLDIGCG~-G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fp 308 (416)
.+..+|-.|+|. |..+..+|+.. +.++++++......+.++..+..++ +...-..............+|.++-...
T Consensus 134 ~~~~vli~g~~~~G~~~~~~a~~~-g~~v~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~d~vi~~~~ 210 (271)
T cd05188 134 PGDTVLVLGAGGVGLLAAQLAKAA-GARVIVTDRSDEKLELAKELGADHV--IDYKEEDLEEELRLTGGGGADVVIDAVG 210 (271)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHHhCCcee--ccCCcCCHHHHHHHhcCCCCCEEEECCC
Confidence 467899999995 77788888876 4789999876544444544443321 1111111101000012456888875432
Q ss_pred CCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919 309 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 344 (416)
Q Consensus 309 dpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t 344 (416)
.+ ..+..+.+.|+++|.+....
T Consensus 211 ~~--------------~~~~~~~~~l~~~G~~v~~~ 232 (271)
T cd05188 211 GP--------------ETLAQALRLLRPGGRIVVVG 232 (271)
T ss_pred CH--------------HHHHHHHHhcccCCEEEEEc
Confidence 21 34667788999999988753
No 303
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=76.63 E-value=24 Score=38.33 Aligned_cols=95 Identities=14% Similarity=0.102 Sum_probs=61.4
Q ss_pred ccccHHHHHHHHh--CCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhc-cCCCceeEEEEECCCCCCCCc
Q 014919 239 SGNGLFLLGMARK--RKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVA-SYPGKLILVSIQCPNPDFNRP 315 (416)
Q Consensus 239 CG~G~~~~~lA~~--~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~-~~~~s~D~v~~~fpdpw~k~~ 315 (416)
||.|.++..+++. ..+..++.+|......+.+++.+ ...+.+|+.+. + .+. ..-+..|.+.+..+|+-
T Consensus 406 ~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g---~~v~~GDat~~-~-~L~~agi~~A~~vv~~~~d~~---- 476 (601)
T PRK03659 406 VGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYG---YKVYYGDATQL-E-LLRAAGAEKAEAIVITCNEPE---- 476 (601)
T ss_pred ecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCC---CeEEEeeCCCH-H-HHHhcCCccCCEEEEEeCCHH----
Confidence 6667888877764 34678999998776666665544 56788999874 1 111 12346777777665541
Q ss_pred chhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHH
Q 014919 316 EHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEV 349 (416)
Q Consensus 316 h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~ 349 (416)
. ...+-...|.+.|+-.++.++.++..
T Consensus 477 ------~-n~~i~~~~r~~~p~~~IiaRa~~~~~ 503 (601)
T PRK03659 477 ------D-TMKIVELCQQHFPHLHILARARGRVE 503 (601)
T ss_pred ------H-HHHHHHHHHHHCCCCeEEEEeCCHHH
Confidence 1 12344456678899898888776544
No 304
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=76.48 E-value=5.7 Score=41.07 Aligned_cols=51 Identities=25% Similarity=0.387 Sum_probs=34.9
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEch----HHHHHHHHHHhCC-CcEEEEE
Q 014919 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL----VTHCRDSLQLSGI-TNGYFIA 282 (416)
Q Consensus 231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~----~~~a~~~a~~~~l-~nv~f~~ 282 (416)
.-.+||||.|||-.+...++... -.++++|. ...|++-..++|. +++.++.
T Consensus 67 kv~vLdigtGTGLLSmMAvraga-D~vtA~EvfkPM~d~arkI~~kng~SdkI~vIn 122 (636)
T KOG1501|consen 67 KVFVLDIGTGTGLLSMMAVRAGA-DSVTACEVFKPMVDLARKIMHKNGMSDKINVIN 122 (636)
T ss_pred eEEEEEccCCccHHHHHHHHhcC-CeEEeehhhchHHHHHHHHHhcCCCccceeeec
Confidence 46799999999988776666654 46999994 4445555555664 3455544
No 305
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=75.95 E-value=5.7 Score=40.62 Aligned_cols=64 Identities=8% Similarity=0.036 Sum_probs=48.8
Q ss_pred HhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919 272 LSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 344 (416)
Q Consensus 272 ~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t 344 (416)
+.++++|++.++++.+.+... +++++|.+.+.-.--|+... ...+.++++.+.++|||++++.+
T Consensus 271 r~~~drv~i~t~si~~~L~~~---~~~s~~~~vL~D~~Dwm~~~------~~~~~~~~l~~~~~pgaRV~~Rs 334 (380)
T PF11899_consen 271 RARLDRVRIHTDSIEEVLRRL---PPGSFDRFVLSDHMDWMDPE------QLNEEWQELARTARPGARVLWRS 334 (380)
T ss_pred hcCCCeEEEEeccHHHHHHhC---CCCCeeEEEecchhhhCCHH------HHHHHHHHHHHHhCCCCEEEEee
Confidence 456789999999999986532 48999998776434465432 12477899999999999999976
No 306
>COG4121 Uncharacterized conserved protein [Function unknown]
Probab=75.04 E-value=15 Score=35.31 Aligned_cols=124 Identities=16% Similarity=0.180 Sum_probs=74.8
Q ss_pred CCeEEEEeccccHHHHHHHHhCCC------------CeEEEEch-------HH------------HHH-----------H
Q 014919 231 QPLVVDIGSGNGLFLLGMARKRKD------------LNFLGLEL-------VT------------HCR-----------D 268 (416)
Q Consensus 231 ~~~vLDIGCG~G~~~~~lA~~~p~------------~~~iGvD~-------~~------------~a~-----------~ 268 (416)
.-.|+|+|.|+|.....+-+.+++ .+++.++. +. .++ +
T Consensus 59 ~~~i~E~gfgtglnfl~~~~~~~~~~~~~~~~~~~~l~~~S~e~~P~~~~~l~~l~~~pel~~~~~~l~~~~~~~~~~~~ 138 (252)
T COG4121 59 ILQILEIGFGTGLNFLTAHLAIGDARQAKLEVVLLDLKFDSIELDPFSPPKCPALWTVPFLCHLADALAPTGPLATYGCA 138 (252)
T ss_pred ceeehhhhcccchhHHHHHhhhhhhhhccccccccccceEEEEeCCCChhhhHHHhhhhhHHHHHHHHhhccCcccchhH
Confidence 578999999999988777665443 34677772 00 000 0
Q ss_pred HHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHH
Q 014919 269 SLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEE 348 (416)
Q Consensus 269 ~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~ 348 (416)
++...+..++.+..+|+...++..-...+ .+|..+..-..|- +++ .+-+++++..+++..+|||++. |..
T Consensus 139 r~~~~g~~~l~l~~gd~~~~~p~~~~~~~-~~dAwflDgFsP~-kNP----~mW~~e~l~~~a~~~~~~~~l~--t~s-- 208 (252)
T COG4121 139 AAVRHGLLLLGLVIGDAGDGIPPVPRRRP-GTDAWFLDGFRPV-KNP----EMWEDELLNLMARIPYRDPTLA--TFA-- 208 (252)
T ss_pred HhhhcchheeeeeeeehhhcCCccccccc-CccEEecCCcccc-CCh----hhccHHHHHHHHhhcCCCCcee--chH--
Confidence 11112455788899999887543211011 5777764321121 122 1234699999999999999976 332
Q ss_pred HHHHHHHHHHhCCCCc
Q 014919 349 VMLRMKQQFLEYGKGK 364 (416)
Q Consensus 349 ~~~~~~~~~~~~~~~~ 364 (416)
-.-..++-+++.|+..
T Consensus 209 sA~~vRr~L~~aGF~v 224 (252)
T COG4121 209 AAIAVRRRLEQAGFTV 224 (252)
T ss_pred HHHHHHHHHHHcCcee
Confidence 3444567788888864
No 307
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=73.11 E-value=26 Score=34.94 Aligned_cols=97 Identities=14% Similarity=0.017 Sum_probs=55.5
Q ss_pred CCeEEEEeccc-cHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcE-EEEEcChhhhhhhhhccCCCceeEEEEECC
Q 014919 231 QPLVVDIGSGN-GLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNG-YFIATNATSTFRSIVASYPGKLILVSIQCP 308 (416)
Q Consensus 231 ~~~vLDIGCG~-G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv-~f~~~Da~~l~~~~~~~~~~s~D~v~~~fp 308 (416)
+..||=.|||. |..++.+|+...-.+++++|....-++.+++.|.+.+ .....+..+.+.... ....+|.++-.-.
T Consensus 177 g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~i~~~~--~~~g~d~vid~~g 254 (358)
T TIGR03451 177 GDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATHTVNSSGTDPVEAIRALT--GGFGADVVIDAVG 254 (358)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEcCCCcCHHHHHHHHh--CCCCCCEEEECCC
Confidence 56777778854 6667778887643359999976655555556665321 111112211111111 2235787753211
Q ss_pred CCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919 309 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 343 (416)
Q Consensus 309 dpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~ 343 (416)
. +..++...+.|++||++.+.
T Consensus 255 ~--------------~~~~~~~~~~~~~~G~iv~~ 275 (358)
T TIGR03451 255 R--------------PETYKQAFYARDLAGTVVLV 275 (358)
T ss_pred C--------------HHHHHHHHHHhccCCEEEEE
Confidence 1 24566778899999998864
No 308
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=71.32 E-value=31 Score=33.71 Aligned_cols=97 Identities=14% Similarity=0.048 Sum_probs=54.1
Q ss_pred CCeEEEEecc-ccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcE-EEEEcChhhhhhhhhccCCCceeEEEEECC
Q 014919 231 QPLVVDIGSG-NGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNG-YFIATNATSTFRSIVASYPGKLILVSIQCP 308 (416)
Q Consensus 231 ~~~vLDIGCG-~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv-~f~~~Da~~l~~~~~~~~~~s~D~v~~~fp 308 (416)
+..||-.|+| .|..++.+|+......+++++......+.+++.+...+ .....+..+.+.... ..+.+|.++-...
T Consensus 168 ~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~i~~~~--~~~~~d~vld~~g 245 (347)
T cd05278 168 GSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAGATDIINPKNGDIVEQILELT--GGRGVDCVIEAVG 245 (347)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhCCcEEEcCCcchHHHHHHHHc--CCCCCcEEEEccC
Confidence 4566667876 47788888988743478888754443444444443221 111111111111111 2356887753211
Q ss_pred CCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919 309 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 343 (416)
Q Consensus 309 dpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~ 343 (416)
. ...+....+.|+++|++...
T Consensus 246 -~-------------~~~~~~~~~~l~~~G~~v~~ 266 (347)
T cd05278 246 -F-------------EETFEQAVKVVRPGGTIANV 266 (347)
T ss_pred -C-------------HHHHHHHHHHhhcCCEEEEE
Confidence 0 14678888999999988753
No 309
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=70.92 E-value=34 Score=32.77 Aligned_cols=96 Identities=15% Similarity=0.014 Sum_probs=54.0
Q ss_pred CCeEEEEecc-ccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCC
Q 014919 231 QPLVVDIGSG-NGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN 309 (416)
Q Consensus 231 ~~~vLDIGCG-~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpd 309 (416)
+..||=+|+| .|..+..+|+...-.+++++|....-++.+++.|.+.+--. .+..+.+.+.. ....+|.++-....
T Consensus 121 g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~-~~~~~~~~~~~--~~~g~d~vid~~G~ 197 (280)
T TIGR03366 121 GRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGATALAEP-EVLAERQGGLQ--NGRGVDVALEFSGA 197 (280)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCcEecCc-hhhHHHHHHHh--CCCCCCEEEECCCC
Confidence 5677777875 35555667776643348999876555555666665422111 11111111111 12357877542111
Q ss_pred CCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919 310 PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 343 (416)
Q Consensus 310 pw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~ 343 (416)
+..++...+.|+|+|++.+.
T Consensus 198 --------------~~~~~~~~~~l~~~G~iv~~ 217 (280)
T TIGR03366 198 --------------TAAVRACLESLDVGGTAVLA 217 (280)
T ss_pred --------------hHHHHHHHHHhcCCCEEEEe
Confidence 25677888999999998864
No 310
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=70.79 E-value=22 Score=35.27 Aligned_cols=92 Identities=20% Similarity=0.138 Sum_probs=54.9
Q ss_pred CCeEEEEeccc-cHHHHHHHHhCCCCeEEEEch---HHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEE
Q 014919 231 QPLVVDIGSGN-GLFLLGMARKRKDLNFLGLEL---VTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 306 (416)
Q Consensus 231 ~~~vLDIGCG~-G~~~~~lA~~~p~~~~iGvD~---~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~ 306 (416)
+..||=+|||. |.++..+|+.. .+++++++. +..-++.+++.|.+.+.....+..+. . ..+.+|.++-.
T Consensus 173 g~~vlI~G~G~vG~~a~q~ak~~-G~~vi~~~~~~~~~~~~~~~~~~Ga~~v~~~~~~~~~~-----~-~~~~~d~vid~ 245 (355)
T cd08230 173 PRRALVLGAGPIGLLAALLLRLR-GFEVYVLNRRDPPDPKADIVEELGATYVNSSKTPVAEV-----K-LVGEFDLIIEA 245 (355)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCCHHHHHHHHHcCCEEecCCccchhhh-----h-hcCCCCEEEEC
Confidence 56788889875 66677788776 458999985 44445556666654221111111110 0 12357777543
Q ss_pred CCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919 307 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 343 (416)
Q Consensus 307 fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~ 343 (416)
... +..+....+.|+++|++.+.
T Consensus 246 ~g~--------------~~~~~~~~~~l~~~G~~v~~ 268 (355)
T cd08230 246 TGV--------------PPLAFEALPALAPNGVVILF 268 (355)
T ss_pred cCC--------------HHHHHHHHHHccCCcEEEEE
Confidence 111 25678888999999998764
No 311
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=69.07 E-value=43 Score=34.23 Aligned_cols=106 Identities=16% Similarity=0.254 Sum_probs=68.9
Q ss_pred eEEEEeccccHHHHHHHHhCCCCeEEEEch--HHHH-HHHHHHhCCC--cEEEEEcChhhhhhhhhccCCCceeEEEEEC
Q 014919 233 LVVDIGSGNGLFLLGMARKRKDLNFLGLEL--VTHC-RDSLQLSGIT--NGYFIATNATSTFRSIVASYPGKLILVSIQC 307 (416)
Q Consensus 233 ~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~--~~~a-~~~a~~~~l~--nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~f 307 (416)
.||=|+-.-|..+..++...|. .+ .|. +..| .++++.++++ +++++.... - .++.+|.|.+..
T Consensus 47 ~~~i~nd~fGal~~~l~~~~~~--~~-~ds~~~~~~~~~n~~~n~~~~~~~~~~~~~~--~-------~~~~~d~vl~~~ 114 (378)
T PRK15001 47 PVLILNDAFGALSCALAEHKPY--SI-GDSYISELATRENLRLNGIDESSVKFLDSTA--D-------YPQQPGVVLIKV 114 (378)
T ss_pred CEEEEcCchhHHHHHHHhCCCC--ee-ehHHHHHHHHHHHHHHcCCCcccceeecccc--c-------ccCCCCEEEEEe
Confidence 6899999999999999976552 22 573 4444 3456667765 466553321 1 245689998874
Q ss_pred CCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHh
Q 014919 308 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLE 359 (416)
Q Consensus 308 pdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~ 359 (416)
||... + -...|..+.++|.||+.++.....+.....|.+.+++
T Consensus 115 ----PK~~~----~-l~~~l~~l~~~l~~~~~ii~g~~~k~i~~~~~~~~~k 157 (378)
T PRK15001 115 ----PKTLA----L-LEQQLRALRKVVTSDTRIIAGAKARDIHTSTLELFEK 157 (378)
T ss_pred ----CCCHH----H-HHHHHHHHHhhCCCCCEEEEEEecCCCcHHHHHHHHH
Confidence 34331 1 2467889999999999988766655444445555544
No 312
>KOG4174 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.99 E-value=44 Score=32.25 Aligned_cols=127 Identities=15% Similarity=0.158 Sum_probs=73.8
Q ss_pred CCCeEEEEeccccHHHHHHHHhCC--CCeEEEEchH--H--------HHHH---HHHHhCCCcEEEEEcChhhhhhhhhc
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRK--DLNFLGLELV--T--------HCRD---SLQLSGITNGYFIATNATSTFRSIVA 294 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p--~~~~iGvD~~--~--------~a~~---~a~~~~l~nv~f~~~Da~~l~~~~~~ 294 (416)
+...||.+|=|.=.++..||..+- ..++++..+. . .+.. ..+..|.. -+...|+..+ .....
T Consensus 56 ~~~~ill~gEgdFSfs~sl~~~~g~sa~ni~atSlDsk~~dl~~KY~~~~~nv~~Lk~lG~~--I~h~Vdv~sl-~~~~~ 132 (282)
T KOG4174|consen 56 KKQKILLVGEGDFSFSLSLAPHFGRSAGNITATSLDSKEFDLKQKYPDAKENVEALKRLGGT--ILHGVDVTSL-KFHAD 132 (282)
T ss_pred ccccEEEecccchhhHHHHHHHhCccccceeeeeccchhhhhhhcccchHHHHHHHHHcCCc--eEecccceeE-Eeccc
Confidence 367899998888888888998764 3466666531 1 1222 22333432 2334444443 11011
Q ss_pred cCCCceeEEEEECCCCCCCC-cchhhhh------hhHHHHHHHHhhcc-CCcEEEEE-eCcHHHHHHHHHHHHh
Q 014919 295 SYPGKLILVSIQCPNPDFNR-PEHRWRM------VQRSLVEAVSDLLV-HDGKVFLQ-SDIEEVMLRMKQQFLE 359 (416)
Q Consensus 295 ~~~~s~D~v~~~fpdpw~k~-~h~krRl------~~~~~l~~i~r~Lk-pgG~l~l~-tD~~~~~~~~~~~~~~ 359 (416)
+.-+.+|.|++|||-.-... ...+++. +...||+.+...|+ ..|.+++. -+..+|..|-++.+.+
T Consensus 133 ~~~~~~d~IiFNFPH~G~g~~~e~d~~~i~~~qkL~rgFle~akemL~~edGeI~itlk~t~P~~~W~ik~Lak 206 (282)
T KOG4174|consen 133 LRLQRYDNIIFNFPHSGKGIKFEQDRNIIPLHQKLFRGFLESAKEMLKDEDGEIHITLKTTYPFNPWNIKFLAK 206 (282)
T ss_pred ccccccceEEEcCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccCCCCchhhhhHhhh
Confidence 13467999999987432111 1122222 23589999999999 88998884 2334566677776654
No 313
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=68.57 E-value=5 Score=40.39 Aligned_cols=106 Identities=18% Similarity=0.214 Sum_probs=55.7
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCe-EEEEchHHHHHHH----HHHh-CCCcEEEEEcChhhhhhhhhccCCCceeEE
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRKDLN-FLGLELVTHCRDS----LQLS-GITNGYFIATNATSTFRSIVASYPGKLILV 303 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~-~iGvD~~~~a~~~----a~~~-~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v 303 (416)
..+.+||+|.|.|.-+.++-.-+|+.+ .+-+|.+. ++++ ..++ .....-.-..|+..- ...+| ....++++
T Consensus 113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp-~lrkV~~tl~~nv~t~~td~r~s~vt~d-Rl~lp-~ad~ytl~ 189 (484)
T COG5459 113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASP-ALRKVGDTLAENVSTEKTDWRASDVTED-RLSLP-AADLYTLA 189 (484)
T ss_pred CcchhhccCCCCchhhhhhcccCCCchhhhhhccCH-HHHHHHHHHHhhcccccCCCCCCccchh-ccCCC-ccceeehh
Confidence 356799999999999888888888753 33344322 2222 1111 111111111222111 01122 34567776
Q ss_pred EEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919 304 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 343 (416)
Q Consensus 304 ~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~ 343 (416)
++. |-...+...|. + ...++.+...+.|||.|++.
T Consensus 190 i~~--~eLl~d~~ek~--i-~~~ie~lw~l~~~gg~lViv 224 (484)
T COG5459 190 IVL--DELLPDGNEKP--I-QVNIERLWNLLAPGGHLVIV 224 (484)
T ss_pred hhh--hhhccccCcch--H-HHHHHHHHHhccCCCeEEEE
Confidence 654 22111111110 1 24789999999999999986
No 314
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=67.46 E-value=47 Score=33.26 Aligned_cols=97 Identities=15% Similarity=0.119 Sum_probs=65.2
Q ss_pred CCeEEEEeccc-cHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcCh--hhh---hhhhhccCCCceeEEE
Q 014919 231 QPLVVDIGSGN-GLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNA--TST---FRSIVASYPGKLILVS 304 (416)
Q Consensus 231 ~~~vLDIGCG~-G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da--~~l---~~~~~~~~~~s~D~v~ 304 (416)
+.++|=+|+|. |-.+...|+.+-..+++.+|+++..++.|++.|.+.+....... ..+ ....+ ....+|..+
T Consensus 170 Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~--g~~~~d~~~ 247 (354)
T KOG0024|consen 170 GSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATVTDPSSHKSSPQELAELVEKAL--GKKQPDVTF 247 (354)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEEeeccccccHHHHHHHHHhhc--cccCCCeEE
Confidence 78999999996 77778888889899999999999888888888876554443322 221 12112 123355543
Q ss_pred EECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919 305 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 343 (416)
Q Consensus 305 ~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~ 343 (416)
.++-- ..-++.....+++||.+.+.
T Consensus 248 -dCsG~-------------~~~~~aai~a~r~gGt~vlv 272 (354)
T KOG0024|consen 248 -DCSGA-------------EVTIRAAIKATRSGGTVVLV 272 (354)
T ss_pred -EccCc-------------hHHHHHHHHHhccCCEEEEe
Confidence 22211 24466778899999997775
No 315
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=67.29 E-value=7.8 Score=34.61 Aligned_cols=85 Identities=14% Similarity=0.109 Sum_probs=49.0
Q ss_pred CeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCCCC
Q 014919 232 PLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPD 311 (416)
Q Consensus 232 ~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdpw 311 (416)
+..+-||||.=.+ +|++..+-++ . . ..|.++ +++... . +|.++|+|.|+.-.. |
T Consensus 4 p~kv~ig~G~~r~-------npgWi~~d~e--d---------~-~~vdlv-c~As~e--~--~F~dns~d~iyaeHv--l 57 (185)
T COG4627 4 PEKVKIGAGGKRV-------NPGWIITDVE--D---------R-PEVDLV-CRASNE--S--MFEDNSVDAIYAEHV--L 57 (185)
T ss_pred ceEEEEecccccc-------CCCceeeehh--c---------c-cccchh-hhhhhh--c--cCCCcchHHHHHHHH--H
Confidence 5678899997433 5665544321 1 0 112222 333332 2 337899998864311 1
Q ss_pred CCCcchhhhhh---hHHHHHHHHhhccCCcEEEEEeCcHHH
Q 014919 312 FNRPEHRWRMV---QRSLVEAVSDLLVHDGKVFLQSDIEEV 349 (416)
Q Consensus 312 ~k~~h~krRl~---~~~~l~~i~r~LkpgG~l~l~tD~~~~ 349 (416)
.| ++ -..++++++|.|||||.|.++.....|
T Consensus 58 ---EH----lt~~Eg~~alkechr~Lrp~G~LriAvPdl~f 91 (185)
T COG4627 58 ---EH----LTYDEGTSALKECHRFLRPGGKLRIAVPDLKF 91 (185)
T ss_pred ---HH----HhHHHHHHHHHHHHHHhCcCcEEEEEcCCcch
Confidence 11 11 137899999999999999998644433
No 316
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=66.37 E-value=61 Score=31.34 Aligned_cols=122 Identities=17% Similarity=0.092 Sum_probs=74.5
Q ss_pred eEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECC-CCC
Q 014919 233 LVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP-NPD 311 (416)
Q Consensus 233 ~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fp-dpw 311 (416)
+++|+=||-|.+...+-+.. -..+.++|+...|.+..+.+-. ....+|+.++....+| . .+|+++..+| .++
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag-~~~~~a~e~~~~a~~~y~~N~~---~~~~~Di~~~~~~~l~--~-~~D~l~ggpPCQ~f 74 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAG-FEVVWAVEIDPDACETYKANFP---EVICGDITEIDPSDLP--K-DVDLLIGGPPCQGF 74 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTT-EEEEEEEESSHHHHHHHHHHHT---EEEESHGGGCHHHHHH--H-T-SEEEEE---TTT
T ss_pred cEEEEccCccHHHHHHHhcC-cEEEEEeecCHHHHHhhhhccc---cccccccccccccccc--c-cceEEEeccCCceE
Confidence 58999999999999888874 2358899998887776544322 7888999987444453 3 5999988865 333
Q ss_pred CCCcch-----hh-hhhhHHHHHHHHhhccCCcEEEEE-------eCcHHHHHHHHHHHHhCCCCc
Q 014919 312 FNRPEH-----RW-RMVQRSLVEAVSDLLVHDGKVFLQ-------SDIEEVMLRMKQQFLEYGKGK 364 (416)
Q Consensus 312 ~k~~h~-----kr-Rl~~~~~l~~i~r~LkpgG~l~l~-------tD~~~~~~~~~~~~~~~~~~~ 364 (416)
...... .| .++ ..+++. .+.++|-- +++. ++...+++.+++.|++.|+..
T Consensus 75 S~ag~~~~~~d~r~~L~-~~~~~~-v~~~~Pk~-~~~ENV~~l~~~~~~~~~~~i~~~l~~lGY~v 137 (335)
T PF00145_consen 75 SIAGKRKGFDDPRNSLF-FEFLRI-VKELKPKY-FLLENVPGLLSSKNGEVFKEILEELEELGYNV 137 (335)
T ss_dssp STTSTHHCCCCHTTSHH-HHHHHH-HHHHS-SE-EEEEEEGGGGTGGGHHHHHHHHHHHHHTTEEE
T ss_pred eccccccccccccchhh-HHHHHH-HhhccceE-EEecccceeeccccccccccccccccccceee
Confidence 222211 11 122 344443 44567843 4443 233457888899999988653
No 317
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=66.08 E-value=60 Score=34.80 Aligned_cols=104 Identities=14% Similarity=0.067 Sum_probs=63.6
Q ss_pred ccccHHHHHHHHhC--CCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhc-cCCCceeEEEEECCCCCCCCc
Q 014919 239 SGNGLFLLGMARKR--KDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVA-SYPGKLILVSIQCPNPDFNRP 315 (416)
Q Consensus 239 CG~G~~~~~lA~~~--p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~-~~~~s~D~v~~~fpdpw~k~~ 315 (416)
||.|.++..+|+.. .+.+++.+|..+...+.+++. +...+++|+.+. + .+. ..-++.|.+.+..+|..
T Consensus 423 ~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~---g~~~i~GD~~~~-~-~L~~a~i~~a~~viv~~~~~~---- 493 (558)
T PRK10669 423 VGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRER---GIRAVLGNAANE-E-IMQLAHLDCARWLLLTIPNGY---- 493 (558)
T ss_pred ECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHC---CCeEEEcCCCCH-H-HHHhcCccccCEEEEEcCChH----
Confidence 56677888888753 356899999876656655543 477899999874 1 111 12246787776655441
Q ss_pred chhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCC
Q 014919 316 EHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGK 362 (416)
Q Consensus 316 h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~ 362 (416)
. ...+-...|.+.|+-.++.+.++++. .+.+++.|.
T Consensus 494 ------~-~~~iv~~~~~~~~~~~iiar~~~~~~----~~~l~~~Ga 529 (558)
T PRK10669 494 ------E-AGEIVASAREKRPDIEIIARAHYDDE----VAYITERGA 529 (558)
T ss_pred ------H-HHHHHHHHHHHCCCCeEEEEECCHHH----HHHHHHcCC
Confidence 0 12233445667888888888766543 233455554
No 318
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=65.94 E-value=39 Score=33.82 Aligned_cols=97 Identities=13% Similarity=0.081 Sum_probs=54.1
Q ss_pred CCeEEEEeccc-cHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCC
Q 014919 231 QPLVVDIGSGN-GLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN 309 (416)
Q Consensus 231 ~~~vLDIGCG~-G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpd 309 (416)
+..||=.|+|. |..+..+|+..-..+++++|....-++.+++.|.+.+ +..+-.++.+.......+.+|.++-.-..
T Consensus 192 g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~--i~~~~~~~~~~i~~~~~~g~d~vid~~G~ 269 (371)
T cd08281 192 GQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGATAT--VNAGDPNAVEQVRELTGGGVDYAFEMAGS 269 (371)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCCceE--eCCCchhHHHHHHHHhCCCCCEEEECCCC
Confidence 45566588753 5566677776533369999976655555556665422 22111111111101112357877532111
Q ss_pred CCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919 310 PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 343 (416)
Q Consensus 310 pw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~ 343 (416)
+..++...+.|+++|++.+.
T Consensus 270 --------------~~~~~~~~~~l~~~G~iv~~ 289 (371)
T cd08281 270 --------------VPALETAYEITRRGGTTVTA 289 (371)
T ss_pred --------------hHHHHHHHHHHhcCCEEEEE
Confidence 25677788899999998764
No 319
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=65.60 E-value=9.3 Score=38.89 Aligned_cols=32 Identities=25% Similarity=0.271 Sum_probs=28.3
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEchH
Q 014919 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELV 263 (416)
Q Consensus 231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~ 263 (416)
-+.++|+|.|.|..+..|+-.+ +..|+|||.+
T Consensus 154 i~~vvD~GaG~G~LSr~lSl~y-~lsV~aIegs 185 (476)
T KOG2651|consen 154 IDQVVDVGAGQGHLSRFLSLGY-GLSVKAIEGS 185 (476)
T ss_pred CCeeEEcCCCchHHHHHHhhcc-CceEEEeccc
Confidence 5789999999999999999887 6789999953
No 320
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=64.64 E-value=50 Score=32.22 Aligned_cols=96 Identities=17% Similarity=0.225 Sum_probs=55.4
Q ss_pred CCeEEEEeccc-cHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEE-EEEcChhhhhhhhhccCCCceeEEEEECC
Q 014919 231 QPLVVDIGSGN-GLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGY-FIATNATSTFRSIVASYPGKLILVSIQCP 308 (416)
Q Consensus 231 ~~~vLDIGCG~-G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~-f~~~Da~~l~~~~~~~~~~s~D~v~~~fp 308 (416)
+..+|-.|+|. |..++.+|+.. +.+++++..+..-.+.++..+.+.+- ....+..+.+.... ....+|.++-..-
T Consensus 160 g~~vLI~g~g~vG~~a~~lA~~~-g~~v~~~~~s~~~~~~~~~~g~~~v~~~~~~~~~~~l~~~~--~~~~vd~vld~~g 236 (337)
T cd08261 160 GDTVLVVGAGPIGLGVIQVAKAR-GARVIVVDIDDERLEFARELGADDTINVGDEDVAARLRELT--DGEGADVVIDATG 236 (337)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc-CCeEEEECCCHHHHHHHHHhCCCEEecCcccCHHHHHHHHh--CCCCCCEEEECCC
Confidence 56778889874 77888888875 67888886544333333444433221 11112112112222 2345888764311
Q ss_pred CCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919 309 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 343 (416)
Q Consensus 309 dpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~ 343 (416)
....+..+.+.|+++|+++..
T Consensus 237 --------------~~~~~~~~~~~l~~~G~~i~~ 257 (337)
T cd08261 237 --------------NPASMEEAVELVAHGGRVVLV 257 (337)
T ss_pred --------------CHHHHHHHHHHHhcCCEEEEE
Confidence 125678889999999998754
No 321
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=64.61 E-value=48 Score=32.67 Aligned_cols=87 Identities=16% Similarity=0.069 Sum_probs=54.5
Q ss_pred CCeEEEEecc-ccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCC
Q 014919 231 QPLVVDIGSG-NGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN 309 (416)
Q Consensus 231 ~~~vLDIGCG-~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpd 309 (416)
+..||=.||| .|..+..+|+.. +.++++++.+..-++.+++.|.+.+- |..+. ..+.+|.++.. +
T Consensus 166 g~~VlV~G~g~iG~~a~~~a~~~-G~~vi~~~~~~~~~~~a~~~Ga~~vi----~~~~~-------~~~~~d~~i~~--~ 231 (329)
T TIGR02822 166 GGRLGLYGFGGSAHLTAQVALAQ-GATVHVMTRGAAARRLALALGAASAG----GAYDT-------PPEPLDAAILF--A 231 (329)
T ss_pred CCEEEEEcCCHHHHHHHHHHHHC-CCeEEEEeCChHHHHHHHHhCCceec----ccccc-------CcccceEEEEC--C
Confidence 5778888875 455566777775 56899998766556667777765321 11111 12346765543 2
Q ss_pred CCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919 310 PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 343 (416)
Q Consensus 310 pw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~ 343 (416)
.- ...+....+.|+++|++.+.
T Consensus 232 ~~------------~~~~~~~~~~l~~~G~~v~~ 253 (329)
T TIGR02822 232 PA------------GGLVPPALEALDRGGVLAVA 253 (329)
T ss_pred Cc------------HHHHHHHHHhhCCCcEEEEE
Confidence 21 24577788999999998774
No 322
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=64.40 E-value=24 Score=32.74 Aligned_cols=106 Identities=15% Similarity=0.187 Sum_probs=64.1
Q ss_pred CCCeEEEEeccccHHHHHHHHh----CCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhh-hhhhccCCCceeEEE
Q 014919 230 AQPLVVDIGSGNGLFLLGMARK----RKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTF-RSIVASYPGKLILVS 304 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~----~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~-~~~~~~~~~s~D~v~ 304 (416)
+..+|+|+|.-.|..++..|.. -....++++|+.-+....+.. ..+.|.|++++..+.. .+......+....|+
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~-e~p~i~f~egss~dpai~eqi~~~~~~y~kIf 147 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAR-EVPDILFIEGSSTDPAIAEQIRRLKNEYPKIF 147 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhh-cCCCeEEEeCCCCCHHHHHHHHHHhcCCCcEE
Confidence 4689999999999998887763 234789999985444332211 1578999999987641 000000122233454
Q ss_pred EECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919 305 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 343 (416)
Q Consensus 305 ~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~ 343 (416)
+. -|.- |+...+ -.-|+.+.++|.-|-++.+.
T Consensus 148 vi-lDsd----Hs~~hv--LAel~~~~pllsaG~Y~vVe 179 (237)
T COG3510 148 VI-LDSD----HSMEHV--LAELKLLAPLLSAGDYLVVE 179 (237)
T ss_pred EE-ecCC----chHHHH--HHHHHHhhhHhhcCceEEEe
Confidence 42 1332 221111 25578888999998888764
No 323
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=64.29 E-value=2.5 Score=35.38 Aligned_cols=48 Identities=8% Similarity=-0.013 Sum_probs=28.5
Q ss_pred eeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe-CcHHH
Q 014919 300 LILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS-DIEEV 349 (416)
Q Consensus 300 ~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t-D~~~~ 349 (416)
||.|.++-..-|..-.|.-.- -..|++.+++.|+|||.|++.. .|..|
T Consensus 2 yDvilclSVtkWIHLn~GD~G--l~~~f~~~~~~L~pGG~lilEpQ~w~sY 50 (110)
T PF06859_consen 2 YDVILCLSVTKWIHLNWGDEG--LKRFFRRIYSLLRPGGILILEPQPWKSY 50 (110)
T ss_dssp EEEEEEES-HHHHHHHHHHHH--HHHHHHHHHHHEEEEEEEEEE---HHHH
T ss_pred ccEEEEEEeeEEEEecCcCHH--HHHHHHHHHHhhCCCCEEEEeCCCcHHH
Confidence 688877633334211111000 1379999999999999999973 45555
No 324
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=63.63 E-value=16 Score=36.89 Aligned_cols=41 Identities=24% Similarity=0.370 Sum_probs=31.0
Q ss_pred cCCCCCCeEEEEeccccHHHHHHHHh----CC----CCeEEEEchHHHH
Q 014919 226 YHDPAQPLVVDIGSGNGLFLLGMARK----RK----DLNFLGLELVTHC 266 (416)
Q Consensus 226 f~~~~~~~vLDIGCG~G~~~~~lA~~----~p----~~~~iGvD~~~~a 266 (416)
++.+..-.++|||.|+|.++..+.+. +| ...|.-||.+.+-
T Consensus 73 ~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L 121 (370)
T COG1565 73 LGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPEL 121 (370)
T ss_pred hcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHH
Confidence 44444557999999999998887764 44 6789999987653
No 325
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=63.54 E-value=9.3 Score=34.90 Aligned_cols=43 Identities=16% Similarity=0.254 Sum_probs=30.0
Q ss_pred ccCCCCCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHH
Q 014919 225 AYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSL 270 (416)
Q Consensus 225 ~f~~~~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a 270 (416)
.+.+ .+.+|||-=||+|..+.+..+. +.+++|+|+.....+.|
T Consensus 187 ~~t~-~gdiVlDpF~GSGTT~~aa~~l--~R~~ig~E~~~~y~~~a 229 (231)
T PF01555_consen 187 ASTN-PGDIVLDPFAGSGTTAVAAEEL--GRRYIGIEIDEEYCEIA 229 (231)
T ss_dssp HHS--TT-EEEETT-TTTHHHHHHHHT--T-EEEEEESSHHHHHHH
T ss_pred hhhc-cceeeehhhhccChHHHHHHHc--CCeEEEEeCCHHHHHHh
Confidence 3444 4899999999999988776665 56899999877665544
No 326
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=63.11 E-value=62 Score=35.36 Aligned_cols=99 Identities=13% Similarity=0.088 Sum_probs=58.8
Q ss_pred CeEEEEeccccHHHHHHHHh--CCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhc-cCCCceeEEEEECC
Q 014919 232 PLVVDIGSGNGLFLLGMARK--RKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVA-SYPGKLILVSIQCP 308 (416)
Q Consensus 232 ~~vLDIGCG~G~~~~~lA~~--~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~-~~~~s~D~v~~~fp 308 (416)
+.|+=+|| |.++..+|+. ..+..++.+|......+.+++.+ ...+.+|+.+. + .+. ..-+..|.+.+..+
T Consensus 401 ~~vII~G~--Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g---~~v~~GDat~~-~-~L~~agi~~A~~vvv~~~ 473 (621)
T PRK03562 401 PRVIIAGF--GRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFG---MKVFYGDATRM-D-LLESAGAAKAEVLINAID 473 (621)
T ss_pred CcEEEEec--ChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcC---CeEEEEeCCCH-H-HHHhcCCCcCCEEEEEeC
Confidence 45555665 5566666553 23578999998766666655544 56788999874 1 111 12246777777655
Q ss_pred CCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHH
Q 014919 309 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEE 348 (416)
Q Consensus 309 dpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~ 348 (416)
|+. . ...+-...|.+.|+-.++.++.+..
T Consensus 474 d~~----------~-n~~i~~~ar~~~p~~~iiaRa~d~~ 502 (621)
T PRK03562 474 DPQ----------T-SLQLVELVKEHFPHLQIIARARDVD 502 (621)
T ss_pred CHH----------H-HHHHHHHHHHhCCCCeEEEEECCHH
Confidence 542 1 1233445666678777777665543
No 327
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=62.52 E-value=10 Score=37.55 Aligned_cols=109 Identities=16% Similarity=0.156 Sum_probs=65.9
Q ss_pred CCeEEEEeccccHHHHHHHHhC--------------------CCCeEEEEch------HHHHHHHHHH------------
Q 014919 231 QPLVVDIGSGNGLFLLGMARKR--------------------KDLNFLGLEL------VTHCRDSLQL------------ 272 (416)
Q Consensus 231 ~~~vLDIGCG~G~~~~~lA~~~--------------------p~~~~iGvD~------~~~a~~~a~~------------ 272 (416)
...||-||=|.|.-++++|..+ |..++..||+ +.+-...+..
T Consensus 87 ~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~ 166 (315)
T PF11312_consen 87 SLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAAN 166 (315)
T ss_pred CceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCccccccccc
Confidence 4789999999999988888765 1258999995 1111111110
Q ss_pred -----hCCCcEEEEEcChhhhhhhhh-cc-CCCceeEEEEECC-CCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919 273 -----SGITNGYFIATNATSTFRSIV-AS-YPGKLILVSIQCP-NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 343 (416)
Q Consensus 273 -----~~l~nv~f~~~Da~~l~~~~~-~~-~~~s~D~v~~~fp-dpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~ 343 (416)
.+.=|+.|.+.|+..+-.+-+ .. .+.+.++|++.|- +-.+..... -..+||..+...++||..|.++
T Consensus 167 ~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~----kTt~FLl~Lt~~~~~GslLLVv 241 (315)
T PF11312_consen 167 WPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSIS----KTTKFLLRLTDICPPGSLLLVV 241 (315)
T ss_pred cccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChH----HHHHHHHHHHhhcCCCcEEEEE
Confidence 112269999999987632111 00 1224666655541 111111111 1248999999999999988885
No 328
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=62.10 E-value=26 Score=36.73 Aligned_cols=128 Identities=8% Similarity=0.016 Sum_probs=79.4
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHh-CC---CcEEEEEcChhhhhhhhhcc--CCCceeEEE
Q 014919 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS-GI---TNGYFIATNATSTFRSIVAS--YPGKLILVS 304 (416)
Q Consensus 231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~-~l---~nv~f~~~Da~~l~~~~~~~--~~~s~D~v~ 304 (416)
...+|=+|-|.|.+...+-...|...+++|++-..+++-+..+ ++ .+......|....+...... .+..+|.+.
T Consensus 296 ~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~~~~~~~dvl~ 375 (482)
T KOG2352|consen 296 GGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQQEDICPDVLM 375 (482)
T ss_pred cCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhccccccCCcEEE
Confidence 5678889999999999998899999999999755554433211 11 12333344554443322211 345788886
Q ss_pred EEC--CCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEE--EeCcHHHHHHHHHHHHh
Q 014919 305 IQC--PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL--QSDIEEVMLRMKQQFLE 359 (416)
Q Consensus 305 ~~f--pdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l--~tD~~~~~~~~~~~~~~ 359 (416)
+.- +|+. ...-+--..+.+.+|..+...|.|-|.+.+ .|-+..+...++.-|+.
T Consensus 376 ~dvds~d~~-g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~~~~~~~~~~~l~~ 433 (482)
T KOG2352|consen 376 VDVDSKDSH-GMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRNSSFKDEVLMNLAK 433 (482)
T ss_pred EECCCCCcc-cCcCCchHHHHHHHHHHHhhccCccceEEEEEecCCcchhHHHHHhhhh
Confidence 542 2321 110011122456889999999999999876 46677777777665554
No 329
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=62.01 E-value=57 Score=32.31 Aligned_cols=46 Identities=17% Similarity=0.317 Sum_probs=32.5
Q ss_pred CCCeEEEEeccc-cHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCC
Q 014919 230 AQPLVVDIGSGN-GLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGIT 276 (416)
Q Consensus 230 ~~~~vLDIGCG~-G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~ 276 (416)
.+..||=+|||. |..++.+|+.. +.+++++|....-++.+++.|.+
T Consensus 166 ~g~~VlV~G~G~vG~~a~~~a~~~-G~~vi~~~~~~~~~~~~~~~Ga~ 212 (349)
T TIGR03201 166 KGDLVIVIGAGGVGGYMVQTAKAM-GAAVVAIDIDPEKLEMMKGFGAD 212 (349)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHHhCCc
Confidence 367888899976 77778888876 45899998755445555555653
No 330
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.96 E-value=25 Score=31.19 Aligned_cols=58 Identities=28% Similarity=0.311 Sum_probs=40.0
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEch----HHHHHHHHHHhCC-CcEEEEEcChhhh
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL----VTHCRDSLQLSGI-TNGYFIATNATST 288 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~----~~~a~~~a~~~~l-~nv~f~~~Da~~l 288 (416)
.....+|||+|.|...++.|+.. -.+-+|+|+ +..++-.+-+.++ +..+|.+-|.-..
T Consensus 72 ~~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~ 134 (199)
T KOG4058|consen 72 PKGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKV 134 (199)
T ss_pred CCCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhc
Confidence 35789999999999998888763 356789995 3333333445555 4578887776443
No 331
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=61.72 E-value=58 Score=31.79 Aligned_cols=95 Identities=14% Similarity=0.150 Sum_probs=54.7
Q ss_pred CCeEEEEeccc-cHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCC
Q 014919 231 QPLVVDIGSGN-GLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN 309 (416)
Q Consensus 231 ~~~vLDIGCG~-G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpd 309 (416)
+..||-.|||. |..+..+|+...-..+++++.+....+.+++.+.+. ++..+-..+ ....+ ..+.+|.++-....
T Consensus 166 ~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~g~~~--vi~~~~~~~-~~~~~-~~~~vd~vld~~g~ 241 (339)
T cd08232 166 GKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAMGADE--TVNLARDPL-AAYAA-DKGDFDVVFEASGA 241 (339)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCCE--EEcCCchhh-hhhhc-cCCCccEEEECCCC
Confidence 56677789887 778888888763337889886554444444445432 222211111 11111 12347877543110
Q ss_pred CCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919 310 PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 343 (416)
Q Consensus 310 pw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~ 343 (416)
...++...+.|+++|+++..
T Consensus 242 --------------~~~~~~~~~~L~~~G~~v~~ 261 (339)
T cd08232 242 --------------PAALASALRVVRPGGTVVQV 261 (339)
T ss_pred --------------HHHHHHHHHHHhcCCEEEEE
Confidence 14577889999999998754
No 332
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=61.18 E-value=61 Score=31.95 Aligned_cols=96 Identities=16% Similarity=0.089 Sum_probs=54.3
Q ss_pred CCeEEEEecc-ccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcE-EEEEcChhhhhhhhhccCCCceeEEEEECC
Q 014919 231 QPLVVDIGSG-NGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNG-YFIATNATSTFRSIVASYPGKLILVSIQCP 308 (416)
Q Consensus 231 ~~~vLDIGCG-~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv-~f~~~Da~~l~~~~~~~~~~s~D~v~~~fp 308 (416)
+..||=.|+| .|..++.+|+......++++|....-.+.++..|.+.+ .....+...-+.... ....+|.++-...
T Consensus 167 g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~i~~~~--~~~~~d~vld~~g 244 (351)
T cd08285 167 GDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEYGATDIVDYKNGDVVEQILKLT--GGKGVDAVIIAGG 244 (351)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCceEecCCCCCHHHHHHHHh--CCCCCcEEEECCC
Confidence 4666667876 46667778877644469999875544455555565322 111112111111111 2345887753211
Q ss_pred CCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEE
Q 014919 309 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 342 (416)
Q Consensus 309 dpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l 342 (416)
.+..+....+.|+++|++..
T Consensus 245 --------------~~~~~~~~~~~l~~~G~~v~ 264 (351)
T cd08285 245 --------------GQDTFEQALKVLKPGGTISN 264 (351)
T ss_pred --------------CHHHHHHHHHHhhcCCEEEE
Confidence 02567888999999998875
No 333
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=61.11 E-value=41 Score=28.91 Aligned_cols=70 Identities=23% Similarity=0.280 Sum_probs=45.2
Q ss_pred EEEEEcCCccc--------hHHHHHHHHHHh--cCeEEEehH-----------HHHHHHHHcCCCCCCcccccCc---hH
Q 014919 9 YAAIIGGGNLC--------NKAAALHFLASR--CDGLIFVGL-----------MSFQIMHALGLPVPPELVEKGA---ND 64 (416)
Q Consensus 9 ~~~i~GGaKv~--------dki~~~~~l~~~--~d~~~~gG~-----------~a~~fl~a~g~~ig~s~~e~~~---~~ 64 (416)
.+.|+||..-. ..+.---.|.+. +..|+++|+ +.-.+|..+|++-..-++|+.. .+
T Consensus 2 ~IvVLG~~~~~~~~~~~~~~R~~~a~~l~~~~~~~~ii~sGg~~~~~~~~ea~~m~~~l~~~gv~~~~I~~e~~s~~T~e 81 (150)
T cd06259 2 AIVVLGGGVNGDGPSPILAERLDAAAELYRAGPAPKLIVSGGQGPGEGYSEAEAMARYLIELGVPAEAILLEDRSTNTYE 81 (150)
T ss_pred EEEEeCCccCCCCCChHHHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHcCCCHHHeeecCCCCCHHH
Confidence 57899999775 455555556555 888888888 3344555667654444555544 56
Q ss_pred HHHHHHHHHhhCCC
Q 014919 65 AASDLIQFARDKHI 78 (416)
Q Consensus 65 ~a~~~~~~~~~~~~ 78 (416)
.|....+.+++++.
T Consensus 82 na~~~~~~~~~~~~ 95 (150)
T cd06259 82 NARFSAELLRERGI 95 (150)
T ss_pred HHHHHHHHHHhcCC
Confidence 67766677776654
No 334
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=60.98 E-value=77 Score=31.36 Aligned_cols=120 Identities=13% Similarity=0.112 Sum_probs=69.3
Q ss_pred EEEEeccccHHHHHHHHhCCCCe-EEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECC-CCC
Q 014919 234 VVDIGSGNGLFLLGMARKRKDLN-FLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP-NPD 311 (416)
Q Consensus 234 vLDIGCG~G~~~~~lA~~~p~~~-~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fp-dpw 311 (416)
++|+=||.|.+...+-+. +.+ +.++|+...|.+..+.+ .++ .++.+|+.++....+ ..+|+++..+| .++
T Consensus 1 vidLF~G~GG~~~Gl~~a--G~~~~~a~e~~~~a~~ty~~N-~~~-~~~~~Di~~~~~~~~----~~~dvl~gg~PCq~f 72 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA--GFKCVFASEIDKYAQKTYEAN-FGN-KVPFGDITKISPSDI----PDFDILLGGFPCQPF 72 (315)
T ss_pred CEEEecCccHHHHHHHHc--CCeEEEEEeCCHHHHHHHHHh-CCC-CCCccChhhhhhhhC----CCcCEEEecCCCccc
Confidence 589999999999888765 344 56799988777765544 333 556789888732212 25898887654 233
Q ss_pred CCCcc-----hhhhhhhHHHHHHHHhhccCCcEEEEEeCcH--------HHHHHHHHHHHhCCCCc
Q 014919 312 FNRPE-----HRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE--------EVMLRMKQQFLEYGKGK 364 (416)
Q Consensus 312 ~k~~h-----~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~--------~~~~~~~~~~~~~~~~~ 364 (416)
..... ..|.-....+++ +.+.++|. .+++. .+. ..+..+++.|+..|+..
T Consensus 73 S~ag~~~~~~d~r~~L~~~~~r-~i~~~~P~-~~v~E-NV~~l~~~~~~~~~~~i~~~l~~~GY~v 135 (315)
T TIGR00675 73 SIAGKRKGFEDTRGTLFFEIVR-ILKEKKPK-FFLLE-NVKGLVSHDKGRTFKVIIETLEELGYKV 135 (315)
T ss_pred chhcccCCCCCchhhHHHHHHH-HHhhcCCC-EEEee-ccHHHHhcccchHHHHHHHHHHhCCCEE
Confidence 22111 111111123333 23345774 33332 222 35667778888877653
No 335
>PHA01634 hypothetical protein
Probab=60.96 E-value=17 Score=31.43 Aligned_cols=42 Identities=14% Similarity=0.027 Sum_probs=34.0
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHH
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL 272 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~ 272 (416)
.+.+|+|||.+-|..++.++.+. ...++++|..++..+..++
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~G-AK~Vva~E~~~kl~k~~ee 69 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRG-ASFVVQYEKEEKLRKKWEE 69 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcC-ccEEEEeccCHHHHHHHHH
Confidence 47899999999999999998774 4689999977666665543
No 336
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=60.76 E-value=63 Score=28.40 Aligned_cols=104 Identities=14% Similarity=0.119 Sum_probs=60.4
Q ss_pred EeccccHHHHHHHHhC--CCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCCCCCCC
Q 014919 237 IGSGNGLFLLGMARKR--KDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNR 314 (416)
Q Consensus 237 IGCG~G~~~~~lA~~~--p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdpw~k~ 314 (416)
||+ |.....+|++. .+..+++.|......+.+.+.+ ++ ...+..++. ...|.|++..|++-
T Consensus 7 IGl--G~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g---~~-~~~s~~e~~--------~~~dvvi~~v~~~~--- 69 (163)
T PF03446_consen 7 IGL--GNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAG---AE-VADSPAEAA--------EQADVVILCVPDDD--- 69 (163)
T ss_dssp E----SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTT---EE-EESSHHHHH--------HHBSEEEE-SSSHH---
T ss_pred Ech--HHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhh---hh-hhhhhhhHh--------hcccceEeecccch---
Confidence 555 66777777652 4678999998766666655554 33 334544442 23588888766541
Q ss_pred cchhhhhhhHHHHHH--HHhhccCCcEEEE-EeCcHHHHHHHHHHHHhCCCCc
Q 014919 315 PEHRWRMVQRSLVEA--VSDLLVHDGKVFL-QSDIEEVMLRMKQQFLEYGKGK 364 (416)
Q Consensus 315 ~h~krRl~~~~~l~~--i~r~LkpgG~l~l-~tD~~~~~~~~~~~~~~~~~~~ 364 (416)
.-.+.+.. +...|++|..++- .|-......++.+.++..+...
T Consensus 70 -------~v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~ 115 (163)
T PF03446_consen 70 -------AVEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKGVRY 115 (163)
T ss_dssp -------HHHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEE
T ss_pred -------hhhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhcccee
Confidence 01255555 6777777766553 3455666777777888777543
No 337
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=60.61 E-value=95 Score=25.59 Aligned_cols=82 Identities=18% Similarity=0.125 Sum_probs=51.2
Q ss_pred EeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCCCCCCCcc
Q 014919 237 IGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPE 316 (416)
Q Consensus 237 IGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdpw~k~~h 316 (416)
+-||+|..+..+++. ..+.++++|++ +.+...+..++ ++.. ....+|.|.+- |. -+
T Consensus 6 lvCg~G~STSlla~k--------------~k~~~~e~gi~-~~i~a~~~~e~-~~~~--~~~~~DvIll~---PQ--i~- 61 (104)
T PRK09590 6 IICAAGMSSSMMAKK--------------TTEYLKEQGKD-IEVDAITATEG-EKAI--AAAEYDLYLVS---PQ--TK- 61 (104)
T ss_pred EECCCchHHHHHHHH--------------HHHHHHHCCCc-eEEEEecHHHH-HHhh--ccCCCCEEEEC---hH--HH-
Confidence 789999988877665 23344566764 77778887776 3222 13458988764 21 11
Q ss_pred hhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHH
Q 014919 317 HRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVM 350 (416)
Q Consensus 317 ~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~ 350 (416)
-.++++...+.+-+.-+...|...|.
T Consensus 62 --------~~~~~i~~~~~~~~ipv~~I~~~~Y~ 87 (104)
T PRK09590 62 --------MYFKQFEEAGAKVGKPVVQIPPQAYI 87 (104)
T ss_pred --------HHHHHHHHHhhhcCCCEEEeCHHHcC
Confidence 22566677776666655557777775
No 338
>PRK11524 putative methyltransferase; Provisional
Probab=60.16 E-value=15 Score=35.87 Aligned_cols=42 Identities=17% Similarity=0.127 Sum_probs=31.6
Q ss_pred cccCCCCCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHH
Q 014919 224 AAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRD 268 (416)
Q Consensus 224 ~~f~~~~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~ 268 (416)
..+.+ .+.+|||-=||+|..+++..+. +.+++|+|+.....+
T Consensus 203 ~~~S~-~GD~VLDPF~GSGTT~~AA~~l--gR~~IG~Ei~~~Y~~ 244 (284)
T PRK11524 203 LASSN-PGDIVLDPFAGSFTTGAVAKAS--GRKFIGIEINSEYIK 244 (284)
T ss_pred HHhCC-CCCEEEECCCCCcHHHHHHHHc--CCCEEEEeCCHHHHH
Confidence 33444 5899999999999988876655 679999997554333
No 339
>PLN02827 Alcohol dehydrogenase-like
Probab=60.05 E-value=70 Score=32.27 Aligned_cols=96 Identities=14% Similarity=0.101 Sum_probs=53.8
Q ss_pred CCeEEEEeccc-cHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEc---ChhhhhhhhhccCCCceeEEEEE
Q 014919 231 QPLVVDIGSGN-GLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIAT---NATSTFRSIVASYPGKLILVSIQ 306 (416)
Q Consensus 231 ~~~vLDIGCG~-G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~---Da~~l~~~~~~~~~~s~D~v~~~ 306 (416)
+..||=.|+|. |..++.+|+..--..++++|....-.+.+++.|.+.+--... +..+.+.+.. .+.+|.++=.
T Consensus 194 g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~lGa~~~i~~~~~~~~~~~~v~~~~---~~g~d~vid~ 270 (378)
T PLN02827 194 GSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTFGVTDFINPNDLSEPIQQVIKRMT---GGGADYSFEC 270 (378)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcEEEcccccchHHHHHHHHHh---CCCCCEEEEC
Confidence 67788788753 455566777664346899996655555566666542211111 1222112211 2357877532
Q ss_pred CCCCCCCCcchhhhhhhHHHHHHHHhhccCC-cEEEEE
Q 014919 307 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHD-GKVFLQ 343 (416)
Q Consensus 307 fpdpw~k~~h~krRl~~~~~l~~i~r~Lkpg-G~l~l~ 343 (416)
.-. +..+....+.|++| |++.+.
T Consensus 271 -~G~-------------~~~~~~~l~~l~~g~G~iv~~ 294 (378)
T PLN02827 271 -VGD-------------TGIATTALQSCSDGWGLTVTL 294 (378)
T ss_pred -CCC-------------hHHHHHHHHhhccCCCEEEEE
Confidence 110 24567788899998 998763
No 340
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=59.26 E-value=54 Score=26.39 Aligned_cols=79 Identities=15% Similarity=0.187 Sum_probs=49.2
Q ss_pred EeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCCCCCCCcc
Q 014919 237 IGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPE 316 (416)
Q Consensus 237 IGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdpw~k~~h 316 (416)
+-||+|..+..++++ ..+.+++++++ +.+...+..+. .. ....+|.|++. |.
T Consensus 4 ~~Cg~G~sTS~~~~k--------------i~~~~~~~~~~-~~v~~~~~~~~-~~----~~~~~Diil~~---Pq----- 55 (96)
T cd05564 4 LVCSAGMSTSILVKK--------------MKKAAEKRGID-AEIEAVPESEL-EE----YIDDADVVLLG---PQ----- 55 (96)
T ss_pred EEcCCCchHHHHHHH--------------HHHHHHHCCCc-eEEEEecHHHH-HH----hcCCCCEEEEC---hh-----
Confidence 579999888876654 33445567764 88888888776 22 23468988764 21
Q ss_pred hhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHH
Q 014919 317 HRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEV 349 (416)
Q Consensus 317 ~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~ 349 (416)
- ...++++.+...+.+.=+...|...|
T Consensus 56 v------~~~~~~i~~~~~~~~~pv~~I~~~~Y 82 (96)
T cd05564 56 V------RYMLDEVKKKAAEYGIPVAVIDMMDY 82 (96)
T ss_pred H------HHHHHHHHHHhccCCCcEEEcChHhc
Confidence 1 13356666655555655555676665
No 341
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=58.76 E-value=52 Score=32.33 Aligned_cols=120 Identities=9% Similarity=0.015 Sum_probs=75.5
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHH----HHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRD----SLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 305 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~----~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~ 305 (416)
++..|+=+| -.--+++++|-.+-..++.-+|+.++.++ -+++.|++|+..+.-|.++-+++.+ .+.||.+..
T Consensus 152 ~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~plpe~~---~~kFDvfiT 227 (354)
T COG1568 152 EGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPLPEDL---KRKFDVFIT 227 (354)
T ss_pred CCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccchhheeehhcccChHHH---HhhCCeeec
Confidence 467788898 44455666665544457777887554433 3567799999999999887655544 578997754
Q ss_pred ECCCCCCCCcchhhhhhhHHHHHHHHhhccCC---cEEEEEeCcHHHHHHH--HH-HHHhCCC
Q 014919 306 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHD---GKVFLQSDIEEVMLRM--KQ-QFLEYGK 362 (416)
Q Consensus 306 ~fpdpw~k~~h~krRl~~~~~l~~i~r~Lkpg---G~l~l~tD~~~~~~~~--~~-~~~~~~~ 362 (416)
||--.-.- -..|+.+=...||-- |++.+.+-..+..+|. .+ ++.+.|+
T Consensus 228 ---DPpeTi~a------lk~FlgRGI~tLkg~~~aGyfgiT~ressidkW~eiQr~lIn~~gv 281 (354)
T COG1568 228 ---DPPETIKA------LKLFLGRGIATLKGEGCAGYFGITRRESSIDKWREIQRILINEMGV 281 (354)
T ss_pred ---CchhhHHH------HHHHHhccHHHhcCCCccceEeeeeccccHHHHHHHHHHHHHhcCe
Confidence 55210000 136777777788876 8899976554444443 33 3344444
No 342
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=58.56 E-value=46 Score=27.26 Aligned_cols=81 Identities=12% Similarity=-0.007 Sum_probs=54.7
Q ss_pred EeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCCCCCCCcc
Q 014919 237 IGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPE 316 (416)
Q Consensus 237 IGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdpw~k~~h 316 (416)
+-||.|..+..++++ ..+.++++|+ ++.+......++ ++. ...+|.+.+- |. -+
T Consensus 5 l~C~~GaSSs~la~k--------------m~~~a~~~gi-~~~i~a~~~~e~-~~~----~~~~Dvill~---PQ--v~- 58 (99)
T cd05565 5 VLCAGGGTSGLLANA--------------LNKGAKERGV-PLEAAAGAYGSH-YDM----IPDYDLVILA---PQ--MA- 58 (99)
T ss_pred EECCCCCCHHHHHHH--------------HHHHHHHCCC-cEEEEEeeHHHH-HHh----ccCCCEEEEc---Ch--HH-
Confidence 679999766666654 3444566777 488888888776 322 3457877764 21 11
Q ss_pred hhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHH
Q 014919 317 HRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVML 351 (416)
Q Consensus 317 ~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~ 351 (416)
-.++++.+.+.+-|.-+...|...|..
T Consensus 59 --------~~~~~i~~~~~~~~ipv~~I~~~~Yg~ 85 (99)
T cd05565 59 --------SYYDELKKDTDRLGIKLVTTTGKQYIE 85 (99)
T ss_pred --------HHHHHHHHHhhhcCCCEEEeCHHHHhH
Confidence 346778888888888777788888863
No 343
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=58.29 E-value=78 Score=31.15 Aligned_cols=97 Identities=13% Similarity=0.131 Sum_probs=53.4
Q ss_pred CCeEEEEeccc-cHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEE-EEEcChhhhhhhhhccCCCceeEEEEECC
Q 014919 231 QPLVVDIGSGN-GLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGY-FIATNATSTFRSIVASYPGKLILVSIQCP 308 (416)
Q Consensus 231 ~~~vLDIGCG~-G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~-f~~~Da~~l~~~~~~~~~~s~D~v~~~fp 308 (416)
+..||=.|||. |..++.+|+......+++++.+..-++.+++.|.+.+- ....+..++ .... ....+|.+.+.+.
T Consensus 161 g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~-~~~~--~~~~~d~~v~d~~ 237 (347)
T PRK10309 161 GKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSLGAMQTFNSREMSAPQI-QSVL--RELRFDQLILETA 237 (347)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCceEecCcccCHHHH-HHHh--cCCCCCeEEEECC
Confidence 56677778754 45566677766433478888765555555555643211 111121222 1112 2335774433321
Q ss_pred CCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919 309 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 343 (416)
Q Consensus 309 dpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~ 343 (416)
- .+..+....+.|++||++.+.
T Consensus 238 G-------------~~~~~~~~~~~l~~~G~iv~~ 259 (347)
T PRK10309 238 G-------------VPQTVELAIEIAGPRAQLALV 259 (347)
T ss_pred C-------------CHHHHHHHHHHhhcCCEEEEE
Confidence 1 125678888999999998875
No 344
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=57.82 E-value=71 Score=32.81 Aligned_cols=57 Identities=11% Similarity=-0.028 Sum_probs=39.0
Q ss_pred CeEEEEeccc-cHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhh
Q 014919 232 PLVVDIGSGN-GLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATST 288 (416)
Q Consensus 232 ~~vLDIGCG~-G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l 288 (416)
..||=||||. |........++.+.+++..|.+....+++......+++.++.|+.+.
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~ 59 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADV 59 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccCh
Confidence 4588899964 44444433344568999999876555655555556899999999775
No 345
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=57.45 E-value=95 Score=30.07 Aligned_cols=95 Identities=15% Similarity=0.080 Sum_probs=54.4
Q ss_pred CCeEEEEeccc-cHHHHHHHHhCCCCe-EEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECC
Q 014919 231 QPLVVDIGSGN-GLFLLGMARKRKDLN-FLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP 308 (416)
Q Consensus 231 ~~~vLDIGCG~-G~~~~~lA~~~p~~~-~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fp 308 (416)
+..+|-+|+|. |..++.+|+... .+ ++.++........+.+.+.. .++..+-........ .....+|.++-...
T Consensus 160 g~~vlI~g~g~vg~~~~~la~~~G-~~~v~~~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~-~~~~~vd~v~~~~~ 235 (334)
T cd08234 160 GDSVLVFGAGPIGLLLAQLLKLNG-ASRVTVAEPNEEKLELAKKLGAT--ETVDPSREDPEAQKE-DNPYGFDVVIEATG 235 (334)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcC-CcEEEEECCCHHHHHHHHHhCCe--EEecCCCCCHHHHHH-hcCCCCcEEEECCC
Confidence 56778889763 777888888764 44 78887654444444445543 222222111100001 12356888764311
Q ss_pred CCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919 309 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 343 (416)
Q Consensus 309 dpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~ 343 (416)
....+....+.|+++|+++..
T Consensus 236 --------------~~~~~~~~~~~l~~~G~~v~~ 256 (334)
T cd08234 236 --------------VPKTLEQAIEYARRGGTVLVF 256 (334)
T ss_pred --------------ChHHHHHHHHHHhcCCEEEEE
Confidence 025677888999999998753
No 346
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=57.44 E-value=84 Score=30.69 Aligned_cols=95 Identities=15% Similarity=0.093 Sum_probs=53.1
Q ss_pred CCeEEEEecc-ccHHHHHHHHhCCCCe-EEEEchHHHHHHHHHHhCCCcEE-EEEcChhhhhhhhhccCCCceeEEEEEC
Q 014919 231 QPLVVDIGSG-NGLFLLGMARKRKDLN-FLGLELVTHCRDSLQLSGITNGY-FIATNATSTFRSIVASYPGKLILVSIQC 307 (416)
Q Consensus 231 ~~~vLDIGCG-~G~~~~~lA~~~p~~~-~iGvD~~~~a~~~a~~~~l~nv~-f~~~Da~~l~~~~~~~~~~s~D~v~~~f 307 (416)
+..||=+|+| .|..+..+|+.. +.+ ++++|....-++.+++.|.+.+- ....+...+ .+.. ....+|.++-..
T Consensus 164 g~~vlV~G~G~vG~~~~~~ak~~-G~~~vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~-~~~~--~~~~~d~vid~~ 239 (339)
T cd08239 164 RDTVLVVGAGPVGLGALMLARAL-GAEDVIGVDPSPERLELAKALGADFVINSGQDDVQEI-RELT--SGAGADVAIECS 239 (339)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHhCCCEEEcCCcchHHHH-HHHh--CCCCCCEEEECC
Confidence 5566667875 344556677765 455 99998765545555566654221 111111122 1111 233688776431
Q ss_pred CCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919 308 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 343 (416)
Q Consensus 308 pdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~ 343 (416)
.. +..+....+.|+++|++.+.
T Consensus 240 g~--------------~~~~~~~~~~l~~~G~~v~~ 261 (339)
T cd08239 240 GN--------------TAARRLALEAVRPWGRLVLV 261 (339)
T ss_pred CC--------------HHHHHHHHHHhhcCCEEEEE
Confidence 11 24566778899999998864
No 347
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=56.97 E-value=1.1e+02 Score=31.53 Aligned_cols=75 Identities=11% Similarity=-0.018 Sum_probs=46.2
Q ss_pred CCeEEEEeccccHHHHHHHHhC--CCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECC
Q 014919 231 QPLVVDIGSGNGLFLLGMARKR--KDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP 308 (416)
Q Consensus 231 ~~~vLDIGCG~G~~~~~lA~~~--p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fp 308 (416)
...++=+|| |.++..+++.. -+.+++.+|......+.+.+.+ .++.++.+|+.+. ..+-...-...|.+++..+
T Consensus 231 ~~~iiIiG~--G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~-~~~~~i~gd~~~~-~~L~~~~~~~a~~vi~~~~ 306 (453)
T PRK09496 231 VKRVMIVGG--GNIGYYLAKLLEKEGYSVKLIERDPERAEELAEEL-PNTLVLHGDGTDQ-ELLEEEGIDEADAFIALTN 306 (453)
T ss_pred CCEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC-CCCeEEECCCCCH-HHHHhcCCccCCEEEECCC
Confidence 355666666 77777777653 3568999997766555544432 4577889998754 2111112356777776544
Q ss_pred C
Q 014919 309 N 309 (416)
Q Consensus 309 d 309 (416)
+
T Consensus 307 ~ 307 (453)
T PRK09496 307 D 307 (453)
T ss_pred C
Confidence 3
No 348
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=56.88 E-value=93 Score=30.35 Aligned_cols=95 Identities=18% Similarity=0.168 Sum_probs=54.5
Q ss_pred CCeEEEEeccc-cHHHHHHHHhCCCCe-EEEEchHHHHHHHHHHhCCCcEEEEEc-ChhhhhhhhhccCCCceeEEEEEC
Q 014919 231 QPLVVDIGSGN-GLFLLGMARKRKDLN-FLGLELVTHCRDSLQLSGITNGYFIAT-NATSTFRSIVASYPGKLILVSIQC 307 (416)
Q Consensus 231 ~~~vLDIGCG~-G~~~~~lA~~~p~~~-~iGvD~~~~a~~~a~~~~l~nv~f~~~-Da~~l~~~~~~~~~~s~D~v~~~f 307 (416)
+..||-.|+|. |..+..+|+.. +.+ +++++-.....+.+...+..++--... ....+ .... ....+|.++-.
T Consensus 160 ~~~vlI~g~g~~g~~~~~lA~~~-G~~~v~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~-~~~~--~~~~~d~vld~- 234 (343)
T cd08236 160 GDTVVVIGAGTIGLLAIQWLKIL-GAKRVIAVDIDDEKLAVARELGADDTINPKEEDVEKV-RELT--EGRGADLVIEA- 234 (343)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHcCCCEEecCccccHHHH-HHHh--CCCCCCEEEEC-
Confidence 56777778876 77888888875 454 888875444444444445432211111 11222 1111 23348887643
Q ss_pred CCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919 308 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 343 (416)
Q Consensus 308 pdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~ 343 (416)
..+ ...+..+.+.|+++|++...
T Consensus 235 ~g~-------------~~~~~~~~~~l~~~G~~v~~ 257 (343)
T cd08236 235 AGS-------------PATIEQALALARPGGKVVLV 257 (343)
T ss_pred CCC-------------HHHHHHHHHHhhcCCEEEEE
Confidence 111 24677889999999998764
No 349
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=56.78 E-value=9.4 Score=36.85 Aligned_cols=80 Identities=15% Similarity=0.081 Sum_probs=44.6
Q ss_pred EEEEcChhhhhhhhhcc---CCCceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeC----------
Q 014919 279 YFIATNATSTFRSIVAS---YPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD---------- 345 (416)
Q Consensus 279 ~f~~~Da~~l~~~~~~~---~~~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD---------- 345 (416)
+++.+|+... + .++. .+..+|+|.+.|.---.-+. +-.....++.+.+.|||||.|++..-
T Consensus 137 ~Vv~cDV~~~-~-pl~~~~~~p~~~D~v~s~fcLE~a~~d----~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~ 210 (256)
T PF01234_consen 137 QVVPCDVTQP-N-PLDPPVVLPPKFDCVISSFCLESACKD----LDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGG 210 (256)
T ss_dssp EEEE--TTSS-S-TTTTS-SS-SSEEEEEEESSHHHH-SS----HHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETT
T ss_pred eEEEeeccCC-C-CCCccccCccchhhhhhhHHHHHHcCC----HHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECC
Confidence 3778888764 2 1210 12359999877642110001 11245789999999999999998531
Q ss_pred ----cHHH-HHHHHHHHHhCCCCc
Q 014919 346 ----IEEV-MLRMKQQFLEYGKGK 364 (416)
Q Consensus 346 ----~~~~-~~~~~~~~~~~~~~~ 364 (416)
.-.+ -+.+.+.+++.|+.+
T Consensus 211 ~~F~~l~l~ee~v~~al~~aG~~i 234 (256)
T PF01234_consen 211 HKFPCLPLNEEFVREALEEAGFDI 234 (256)
T ss_dssp EEEE---B-HHHHHHHHHHTTEEE
T ss_pred EecccccCCHHHHHHHHHHcCCEE
Confidence 0111 234556777887754
No 350
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=56.74 E-value=9.3 Score=36.47 Aligned_cols=34 Identities=24% Similarity=0.376 Sum_probs=25.1
Q ss_pred CCeEEEEeccccHHHHHHHHhC----C----CCeEEEEchHH
Q 014919 231 QPLVVDIGSGNGLFLLGMARKR----K----DLNFLGLELVT 264 (416)
Q Consensus 231 ~~~vLDIGCG~G~~~~~lA~~~----p----~~~~iGvD~~~ 264 (416)
.-.|+|+|.|+|.++..+.+.. | ..+|+-||.+.
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp 60 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISP 60 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCH
Confidence 3689999999999998887652 2 46899999753
No 351
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=56.05 E-value=98 Score=30.75 Aligned_cols=95 Identities=11% Similarity=0.103 Sum_probs=57.1
Q ss_pred CCCeEEEEec--cccHHHHHHHHhCCCCeEEEEchHHHHHHHHH-HhCCCcEEEEE-c-ChhhhhhhhhccCCCceeEEE
Q 014919 230 AQPLVVDIGS--GNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ-LSGITNGYFIA-T-NATSTFRSIVASYPGKLILVS 304 (416)
Q Consensus 230 ~~~~vLDIGC--G~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~-~~~l~nv~f~~-~-Da~~l~~~~~~~~~~s~D~v~ 304 (416)
.+..||=.|+ |.|..++.+|+.. +.++++++.+..-.+.++ +.|.+.+--.. . +..+.+.... .+.+|.++
T Consensus 158 ~g~~VlV~GaaG~vG~~aiqlAk~~-G~~Vi~~~~~~~k~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~---~~gvD~v~ 233 (348)
T PLN03154 158 KGDSVFVSAASGAVGQLVGQLAKLH-GCYVVGSAGSSQKVDLLKNKLGFDEAFNYKEEPDLDAALKRYF---PEGIDIYF 233 (348)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHhcCCCEEEECCCcccHHHHHHHHC---CCCcEEEE
Confidence 3678888887 4788889999886 578999886554344443 45654322111 1 2222212211 34588775
Q ss_pred EECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919 305 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 343 (416)
Q Consensus 305 ~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~ 343 (416)
-... ...+....+.|+++|++.+.
T Consensus 234 d~vG---------------~~~~~~~~~~l~~~G~iv~~ 257 (348)
T PLN03154 234 DNVG---------------GDMLDAALLNMKIHGRIAVC 257 (348)
T ss_pred ECCC---------------HHHHHHHHHHhccCCEEEEE
Confidence 3210 14567788899999998764
No 352
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=55.52 E-value=51 Score=32.98 Aligned_cols=95 Identities=16% Similarity=0.168 Sum_probs=55.3
Q ss_pred CCeEEEEe-ccccHHHHHHHHhCCCCeEEEEchHHHHHH-HHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECC
Q 014919 231 QPLVVDIG-SGNGLFLLGMARKRKDLNFLGLELVTHCRD-SLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP 308 (416)
Q Consensus 231 ~~~vLDIG-CG~G~~~~~lA~~~p~~~~iGvD~~~~a~~-~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fp 308 (416)
+..+-=+| +|-|.+++.+|++. ..+++++|-+.+..+ .++..|.+..-....|-... ......-++-+|.+.. +.
T Consensus 182 G~~vgI~GlGGLGh~aVq~AKAM-G~rV~vis~~~~kkeea~~~LGAd~fv~~~~d~d~~-~~~~~~~dg~~~~v~~-~a 258 (360)
T KOG0023|consen 182 GKWVGIVGLGGLGHMAVQYAKAM-GMRVTVISTSSKKKEEAIKSLGADVFVDSTEDPDIM-KAIMKTTDGGIDTVSN-LA 258 (360)
T ss_pred CcEEEEecCcccchHHHHHHHHh-CcEEEEEeCCchhHHHHHHhcCcceeEEecCCHHHH-HHHHHhhcCcceeeee-cc
Confidence 44444444 45899999999997 689999997643333 33446665422222232222 2222222455565542 21
Q ss_pred CCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919 309 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 343 (416)
Q Consensus 309 dpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~ 343 (416)
. .-++.+.+.||++|.+.+.
T Consensus 259 ------~---------~~~~~~~~~lk~~Gt~V~v 278 (360)
T KOG0023|consen 259 ------E---------HALEPLLGLLKVNGTLVLV 278 (360)
T ss_pred ------c---------cchHHHHHHhhcCCEEEEE
Confidence 1 2356778899999998885
No 353
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=55.34 E-value=13 Score=35.43 Aligned_cols=113 Identities=15% Similarity=0.212 Sum_probs=60.8
Q ss_pred eEeeeecccCCCCc---ccccccC-ccccccccccCCCCCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHH
Q 014919 196 AVWEFLKGRMLPGV---SALDRAF-PFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ 271 (416)
Q Consensus 196 a~le~l~gr~lPg~---~aL~~~~-p~~~~~~~~f~~~~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~ 271 (416)
..|++-+|+..|-+ +.+.... .....-.....+ .+-++||||.|.-.+--.+-.+.=.++|+|.|+...+++.|+
T Consensus 41 ~~wdiPeg~LCPpvPgRAdYih~laDLL~s~~g~~~~-~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~ 119 (292)
T COG3129 41 RYWDIPEGFLCPPVPGRADYIHHLADLLASTSGQIPG-KNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAK 119 (292)
T ss_pred eEecCCCCCcCCCCCChhHHHHHHHHHHHhcCCCCCc-CceEEEeeccCcccccccccceeecceeecCccCHHHHHHHH
Confidence 45999999877655 2222111 000000111112 367899999998776544444433789999998555444433
Q ss_pred ----Hh-CCCc-EEEEE-cChhhhhhhhhccCCCceeEEEEECCCCCC
Q 014919 272 ----LS-GITN-GYFIA-TNATSTFRSIVASYPGKLILVSIQCPNPDF 312 (416)
Q Consensus 272 ----~~-~l~n-v~f~~-~Da~~l~~~~~~~~~~s~D~v~~~fpdpw~ 312 (416)
.+ ++++ +++.+ -|-..+++.... ..+.||...+| .|++
T Consensus 120 ~ii~~N~~l~~~I~lr~qk~~~~if~giig-~nE~yd~tlCN--PPFh 164 (292)
T COG3129 120 AIISANPGLERAIRLRRQKDSDAIFNGIIG-KNERYDATLCN--PPFH 164 (292)
T ss_pred HHHHcCcchhhheeEEeccCcccccccccc-ccceeeeEecC--CCcc
Confidence 22 4443 55543 333333332221 25689998887 4554
No 354
>PRK10206 putative oxidoreductase; Provisional
Probab=54.91 E-value=84 Score=31.44 Aligned_cols=69 Identities=10% Similarity=0.080 Sum_probs=37.5
Q ss_pred eEEEEeccc-cH--HHHHHHHhCCCCeEEEE-chHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECC
Q 014919 233 LVVDIGSGN-GL--FLLGMARKRKDLNFLGL-ELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP 308 (416)
Q Consensus 233 ~vLDIGCG~-G~--~~~~lA~~~p~~~~iGv-D~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fp 308 (416)
++-=||||. +. +...+....++.+++++ |....+.+.+++.+ .+.+ ..|..+++ .+..+|.|++.-|
T Consensus 3 rvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~--~~~~-~~~~~ell------~~~~iD~V~I~tp 73 (344)
T PRK10206 3 NCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYS--HIHF-TSDLDEVL------NDPDVKLVVVCTH 73 (344)
T ss_pred EEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHHHHHHhcC--CCcc-cCCHHHHh------cCCCCCEEEEeCC
Confidence 355689996 32 23334344467788874 55443333333322 2322 35666553 3567999998765
Q ss_pred CC
Q 014919 309 NP 310 (416)
Q Consensus 309 dp 310 (416)
+.
T Consensus 74 ~~ 75 (344)
T PRK10206 74 AD 75 (344)
T ss_pred ch
Confidence 54
No 355
>PLN02740 Alcohol dehydrogenase-like
Probab=54.80 E-value=94 Score=31.24 Aligned_cols=94 Identities=20% Similarity=0.201 Sum_probs=54.0
Q ss_pred CCeEEEEeccc-cHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcC-----hhhhhhhhhccCCCceeEEE
Q 014919 231 QPLVVDIGSGN-GLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATN-----ATSTFRSIVASYPGKLILVS 304 (416)
Q Consensus 231 ~~~vLDIGCG~-G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~D-----a~~l~~~~~~~~~~s~D~v~ 304 (416)
+..||=+|||. |..++.+|+.....+++++|....-++.+++.|.+. ++..+ ..+.+.+.. .+.+|.++
T Consensus 199 g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~--~i~~~~~~~~~~~~v~~~~---~~g~dvvi 273 (381)
T PLN02740 199 GSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEMGITD--FINPKDSDKPVHERIREMT---GGGVDYSF 273 (381)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHcCCcE--EEecccccchHHHHHHHHh---CCCCCEEE
Confidence 57788888753 445566777764337999997665555566666543 22211 211112111 23588775
Q ss_pred EECCCCCCCCcchhhhhhhHHHHHHHHhhccCC-cEEEEE
Q 014919 305 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHD-GKVFLQ 343 (416)
Q Consensus 305 ~~fpdpw~k~~h~krRl~~~~~l~~i~r~Lkpg-G~l~l~ 343 (416)
-.-.. +..++...+.++++ |++.+.
T Consensus 274 d~~G~--------------~~~~~~a~~~~~~g~G~~v~~ 299 (381)
T PLN02740 274 ECAGN--------------VEVLREAFLSTHDGWGLTVLL 299 (381)
T ss_pred ECCCC--------------hHHHHHHHHhhhcCCCEEEEE
Confidence 43111 25667777888886 887764
No 356
>PRK10834 vancomycin high temperature exclusion protein; Provisional
Probab=54.04 E-value=48 Score=31.67 Aligned_cols=59 Identities=12% Similarity=0.145 Sum_probs=36.5
Q ss_pred CCCCCcEEEEEcCCccc----------hHHHHHHHHHH--hcCeEEEehH-----------HHHHHHHHcCCCCCCcccc
Q 014919 3 KLDEKPYAAIIGGGNLC----------NKAAALHFLAS--RCDGLIFVGL-----------MSFQIMHALGLPVPPELVE 59 (416)
Q Consensus 3 ~~~~~p~~~i~GGaKv~----------dki~~~~~l~~--~~d~~~~gG~-----------~a~~fl~a~g~~ig~s~~e 59 (416)
+-|+++.+.|||++++. +.|..--.|.+ ++.+||+.|+ |.. .|.++|++-.+=++|
T Consensus 41 ~~p~~d~ivVLGa~~~~~~g~ps~~l~~Rl~~A~~LYk~gk~~~ilvSGg~~~~~~~Ea~~M~~-yLi~~GVp~e~Ii~e 119 (239)
T PRK10834 41 DLPYRQVGVVLGTAKYYRTGVINQYYRYRIQGAINAYNSGKVNYLLLSGDNALQSYNEPMTMRK-DLIAAGVDPSDIVLD 119 (239)
T ss_pred hCCCCCEEEEcCCcccCCCCCcCHHHHHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHHH-HHHHcCCCHHHEEec
Confidence 35788999999998762 22333333433 3888888886 333 344577766555556
Q ss_pred cCc
Q 014919 60 KGA 62 (416)
Q Consensus 60 ~~~ 62 (416)
...
T Consensus 120 ~~s 122 (239)
T PRK10834 120 YAG 122 (239)
T ss_pred CCC
Confidence 555
No 357
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=52.87 E-value=1.1e+02 Score=30.56 Aligned_cols=96 Identities=16% Similarity=0.117 Sum_probs=54.2
Q ss_pred CCeEEEEeccc-cHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEE---cChhhhhhhhhccCCCceeEEEEE
Q 014919 231 QPLVVDIGSGN-GLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIA---TNATSTFRSIVASYPGKLILVSIQ 306 (416)
Q Consensus 231 ~~~vLDIGCG~-G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~---~Da~~l~~~~~~~~~~s~D~v~~~ 306 (416)
+..||=.|||. |..++.+|+.....+++++|....-++.+++.|.+.+--.. .+..+.+.+.. .+.+|.++-.
T Consensus 186 g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~---~~g~d~vid~ 262 (368)
T TIGR02818 186 GDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKLGATDCVNPNDYDKPIQEVIVEIT---DGGVDYSFEC 262 (368)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCeEEcccccchhHHHHHHHHh---CCCCCEEEEC
Confidence 56777778864 55667788776444799999766656666666654321111 11111111111 2357776532
Q ss_pred CCCCCCCCcchhhhhhhHHHHHHHHhhccCC-cEEEEE
Q 014919 307 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHD-GKVFLQ 343 (416)
Q Consensus 307 fpdpw~k~~h~krRl~~~~~l~~i~r~Lkpg-G~l~l~ 343 (416)
-.. +..+....+.|+++ |++.+.
T Consensus 263 ~G~--------------~~~~~~~~~~~~~~~G~~v~~ 286 (368)
T TIGR02818 263 IGN--------------VNVMRAALECCHKGWGESIII 286 (368)
T ss_pred CCC--------------HHHHHHHHHHhhcCCCeEEEE
Confidence 111 24567777888886 887654
No 358
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=52.73 E-value=1e+02 Score=28.99 Aligned_cols=89 Identities=20% Similarity=0.178 Sum_probs=51.8
Q ss_pred CCeEEEEeccc-cHHHHHHHHhCCCCe-EEEEchHHHHHHHHHHhCC-CcEEEEEcChhhhhhhhhccCCCceeEEEEEC
Q 014919 231 QPLVVDIGSGN-GLFLLGMARKRKDLN-FLGLELVTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVSIQC 307 (416)
Q Consensus 231 ~~~vLDIGCG~-G~~~~~lA~~~p~~~-~iGvD~~~~a~~~a~~~~l-~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~f 307 (416)
+..+|=.|||. |..++.+|+... .+ +++++....-.+.+++.+. ..+. ... ... . ....+|.++-..
T Consensus 98 g~~vlI~g~g~vg~~~i~~a~~~g-~~~vi~~~~~~~~~~~~~~~g~~~~~~--~~~-~~~----~--~~~~~d~vl~~~ 167 (277)
T cd08255 98 GERVAVVGLGLVGLLAAQLAKAAG-AREVVGVDPDAARRELAEALGPADPVA--ADT-ADE----I--GGRGADVVIEAS 167 (277)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcC-CCcEEEECCCHHHHHHHHHcCCCcccc--ccc-hhh----h--cCCCCCEEEEcc
Confidence 45666678876 777888888764 45 9999864433344444441 1111 000 001 1 234578775421
Q ss_pred CCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919 308 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 343 (416)
Q Consensus 308 pdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~ 343 (416)
.. ...+....+.|+++|++...
T Consensus 168 ~~--------------~~~~~~~~~~l~~~g~~~~~ 189 (277)
T cd08255 168 GS--------------PSALETALRLLRDRGRVVLV 189 (277)
T ss_pred CC--------------hHHHHHHHHHhcCCcEEEEE
Confidence 10 24567888999999998864
No 359
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=52.56 E-value=1.4e+02 Score=29.04 Aligned_cols=94 Identities=12% Similarity=0.064 Sum_probs=57.0
Q ss_pred CCeEEEEec--cccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEc--ChhhhhhhhhccCCCceeEEEEE
Q 014919 231 QPLVVDIGS--GNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIAT--NATSTFRSIVASYPGKLILVSIQ 306 (416)
Q Consensus 231 ~~~vLDIGC--G~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~--Da~~l~~~~~~~~~~s~D~v~~~ 306 (416)
+..||=.|. |.|..++.+|+.. +.++++++.+..-.+.+++.|.+.+--... +..+..... ..+.+|.++-.
T Consensus 139 g~~VLI~ga~g~vG~~aiqlAk~~-G~~Vi~~~~s~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~---~~~gvdvv~d~ 214 (325)
T TIGR02825 139 GETVMVNAAAGAVGSVVGQIAKLK-GCKVVGAAGSDEKVAYLKKLGFDVAFNYKTVKSLEETLKKA---SPDGYDCYFDN 214 (325)
T ss_pred CCEEEEeCCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHcCCCEEEeccccccHHHHHHHh---CCCCeEEEEEC
Confidence 567777773 5788888899875 568898886655555566666643221111 222221111 23458877532
Q ss_pred CCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919 307 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 343 (416)
Q Consensus 307 fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~ 343 (416)
.. ...+....++|+++|++...
T Consensus 215 ~G---------------~~~~~~~~~~l~~~G~iv~~ 236 (325)
T TIGR02825 215 VG---------------GEFSNTVIGQMKKFGRIAIC 236 (325)
T ss_pred CC---------------HHHHHHHHHHhCcCcEEEEe
Confidence 11 13457788999999999864
No 360
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=51.46 E-value=1.3e+02 Score=29.19 Aligned_cols=94 Identities=16% Similarity=0.174 Sum_probs=55.4
Q ss_pred CCCeEEEEecc-ccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECC
Q 014919 230 AQPLVVDIGSG-NGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP 308 (416)
Q Consensus 230 ~~~~vLDIGCG-~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fp 308 (416)
.+..+|-+||| .|..+..+|+.. +.++++++......+.+++.+.+.+ +..+-...... ..+.+|.++-...
T Consensus 162 ~~~~vlI~g~g~iG~~~~~~a~~~-G~~v~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~----~~~~~d~vi~~~~ 234 (330)
T cd08245 162 PGERVAVLGIGGLGHLAVQYARAM-GFETVAITRSPDKRELARKLGADEV--VDSGAELDEQA----AAGGADVILVTVV 234 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHhCCcEE--eccCCcchHHh----ccCCCCEEEECCC
Confidence 35677778997 788888888875 5678888765544444444443322 11111111111 1245787764322
Q ss_pred CCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919 309 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 344 (416)
Q Consensus 309 dpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t 344 (416)
. ...+..+.+.|+++|.+....
T Consensus 235 ~--------------~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 235 S--------------GAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred c--------------HHHHHHHHHhcccCCEEEEEC
Confidence 1 245678889999999988654
No 361
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=51.44 E-value=41 Score=35.44 Aligned_cols=43 Identities=16% Similarity=0.156 Sum_probs=32.0
Q ss_pred CCcEEEEEcCC-ccchHHHHHHHHHHhcCeEEEehHHHHHHHHH
Q 014919 6 EKPYAAIIGGG-NLCNKAAALHFLASRCDGLIFVGLMSFQIMHA 48 (416)
Q Consensus 6 ~~p~~~i~GGa-Kv~dki~~~~~l~~~~d~~~~gG~~a~~fl~a 48 (416)
.++.++|+||- |=.|.=.+.+.+.+++|.+++.|--+..+...
T Consensus 387 ~~~ii~IlGg~~~~~~~~~~~~~l~~~~~~vi~~G~~~~~i~~~ 430 (498)
T PRK02006 387 AQRVVLIAGGDGKGQDFSPLAAPVARHARAVVLIGRDAPAIRAA 430 (498)
T ss_pred CCCEEEEEcCCCCCCCHHHHHHHHHHhCCEEEEEcCCHHHHHHH
Confidence 46789999996 45566666666777899999999776666543
No 362
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=50.71 E-value=1.3e+02 Score=29.00 Aligned_cols=106 Identities=12% Similarity=0.093 Sum_probs=56.1
Q ss_pred EEEEeccc-cH-HHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCCCC
Q 014919 234 VVDIGSGN-GL-FLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPD 311 (416)
Q Consensus 234 vLDIGCG~-G~-~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdpw 311 (416)
|-=||||. |. ++..+++ .+.++++.|......+.+...+. . ...+..++ + ...|.|++..|++.
T Consensus 5 IgviG~G~mG~~~a~~l~~--~g~~v~~~d~~~~~~~~~~~~g~---~-~~~~~~e~----~----~~~d~vi~~vp~~~ 70 (296)
T PRK11559 5 VGFIGLGIMGKPMSKNLLK--AGYSLVVYDRNPEAVAEVIAAGA---E-TASTAKAV----A----EQCDVIITMLPNSP 70 (296)
T ss_pred EEEEccCHHHHHHHHHHHH--CCCeEEEEcCCHHHHHHHHHCCC---e-ecCCHHHH----H----hcCCEEEEeCCCHH
Confidence 45567765 32 3334443 35678899976544444444332 1 12233322 1 34688988876542
Q ss_pred CCCcchhhhhhhHHHH---HHHHhhccCCcEEE-EEeCcHHHHHHHHHHHHhCCCC
Q 014919 312 FNRPEHRWRMVQRSLV---EAVSDLLVHDGKVF-LQSDIEEVMLRMKQQFLEYGKG 363 (416)
Q Consensus 312 ~k~~h~krRl~~~~~l---~~i~r~LkpgG~l~-l~tD~~~~~~~~~~~~~~~~~~ 363 (416)
+- ...+ +.+...+++|-.+. +.|-.....+.+.+.+...+..
T Consensus 71 ----~~------~~v~~~~~~~~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~ 116 (296)
T PRK11559 71 ----HV------KEVALGENGIIEGAKPGTVVIDMSSIAPLASREIAAALKAKGIE 116 (296)
T ss_pred ----HH------HHHHcCcchHhhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCc
Confidence 11 1222 23556677766555 2344555666777777776654
No 363
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=49.86 E-value=1.3e+02 Score=29.83 Aligned_cols=95 Identities=13% Similarity=0.061 Sum_probs=59.0
Q ss_pred CCeEEEEe--ccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCc-EEEEEcChhhhhhhhhccCCCceeEEEEEC
Q 014919 231 QPLVVDIG--SGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVSIQC 307 (416)
Q Consensus 231 ~~~vLDIG--CG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~n-v~f~~~Da~~l~~~~~~~~~~s~D~v~~~f 307 (416)
+..||=.| -|-|.+++.||++.-. .++++-.+..-.+.+++.|.+. +.+...|..+-..+.. ....+|.|+-.
T Consensus 143 g~~VLV~gaaGgVG~~aiQlAk~~G~-~~v~~~~s~~k~~~~~~lGAd~vi~y~~~~~~~~v~~~t--~g~gvDvv~D~- 218 (326)
T COG0604 143 GETVLVHGAAGGVGSAAIQLAKALGA-TVVAVVSSSEKLELLKELGADHVINYREEDFVEQVRELT--GGKGVDVVLDT- 218 (326)
T ss_pred CCEEEEecCCchHHHHHHHHHHHcCC-cEEEEecCHHHHHHHHhcCCCEEEcCCcccHHHHHHHHc--CCCCceEEEEC-
Confidence 67788887 4678889999998754 5555544332223566667553 3344444443323322 23369988632
Q ss_pred CCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919 308 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 343 (416)
Q Consensus 308 pdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~ 343 (416)
. -...+....+.|+++|++..-
T Consensus 219 ---v-----------G~~~~~~~l~~l~~~G~lv~i 240 (326)
T COG0604 219 ---V-----------GGDTFAASLAALAPGGRLVSI 240 (326)
T ss_pred ---C-----------CHHHHHHHHHHhccCCEEEEE
Confidence 1 236677788999999998874
No 364
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=49.85 E-value=87 Score=30.96 Aligned_cols=91 Identities=11% Similarity=0.078 Sum_probs=51.1
Q ss_pred CCCeEEEEeccc-cHHHHHHHHh-CCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEEC
Q 014919 230 AQPLVVDIGSGN-GLFLLGMARK-RKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQC 307 (416)
Q Consensus 230 ~~~~vLDIGCG~-G~~~~~lA~~-~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~f 307 (416)
.+..||=+|||. |.+++.+|++ ....+++++|.+..-++.++..+. ... ..++ . ....+|.++=.-
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~--~~~----~~~~-~-----~~~g~d~viD~~ 230 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADE--TYL----IDDI-P-----EDLAVDHAFECV 230 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCc--eee----hhhh-h-----hccCCcEEEECC
Confidence 367888899864 3344566765 556789999976543444433221 111 1111 1 112367775321
Q ss_pred CCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919 308 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 343 (416)
Q Consensus 308 pdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~ 343 (416)
..+ ..+..++...+.|+++|++.+.
T Consensus 231 G~~-----------~~~~~~~~~~~~l~~~G~iv~~ 255 (341)
T cd08237 231 GGR-----------GSQSAINQIIDYIRPQGTIGLM 255 (341)
T ss_pred CCC-----------ccHHHHHHHHHhCcCCcEEEEE
Confidence 110 0135677888999999998764
No 365
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=49.54 E-value=8.5 Score=35.17 Aligned_cols=26 Identities=19% Similarity=0.348 Sum_probs=21.3
Q ss_pred HHHHHHHHhhccCCcEEEEEeCcHHH
Q 014919 324 RSLVEAVSDLLVHDGKVFLQSDIEEV 349 (416)
Q Consensus 324 ~~~l~~i~r~LkpgG~l~l~tD~~~~ 349 (416)
..++.++.|+|||||.+++..++...
T Consensus 36 ~~~~~~~~rvLk~~g~~~i~~~~~~~ 61 (231)
T PF01555_consen 36 EEWLKECYRVLKPGGSIFIFIDDREI 61 (231)
T ss_dssp HHHHHHHHHHEEEEEEEEEEE-CCEE
T ss_pred HHHHHHHHhhcCCCeeEEEEecchhh
Confidence 57899999999999999998776544
No 366
>KOG2811 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.22 E-value=34 Score=34.71 Aligned_cols=57 Identities=14% Similarity=0.067 Sum_probs=37.8
Q ss_pred CeEEEEeccccHHHHHHHHhCCCCeEEE---EchH-HHHH-H-HHHHhCCCcEEEEEcChhhh
Q 014919 232 PLVVDIGSGNGLFLLGMARKRKDLNFLG---LELV-THCR-D-SLQLSGITNGYFIATNATST 288 (416)
Q Consensus 232 ~~vLDIGCG~G~~~~~lA~~~p~~~~iG---vD~~-~~a~-~-~a~~~~l~nv~f~~~Da~~l 288 (416)
..++|+|||.|.++..++...++.+++- +|-. .+.. . +..+..-.-+.=++.|+.++
T Consensus 184 ~~~vEFGAGrg~Ls~~vs~~l~~~~~~l~vlvdR~s~R~K~D~k~~~~~~~vi~R~riDI~dL 246 (420)
T KOG2811|consen 184 SCFVEFGAGRGELSRWVSDCLQIQNVYLFVLVDRKSSRLKFDRKLRNKNSLVIKRIRIDIEDL 246 (420)
T ss_pred ceEEEecCCchHHHHHHHHHhccccEEEEEeecccchhhhhhhhhhccCcchhheeEeeHHhc
Confidence 6899999999999999999988877776 7732 1111 1 11111112355567788776
No 367
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=48.89 E-value=1.3e+02 Score=29.35 Aligned_cols=96 Identities=14% Similarity=0.071 Sum_probs=52.7
Q ss_pred CCeEEEEeccc-cHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEE-EEEcChhhhhhhhhccCCCceeEEEEECC
Q 014919 231 QPLVVDIGSGN-GLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGY-FIATNATSTFRSIVASYPGKLILVSIQCP 308 (416)
Q Consensus 231 ~~~vLDIGCG~-G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~-f~~~Da~~l~~~~~~~~~~s~D~v~~~fp 308 (416)
+..+|=.|||. |..+..+|+.....++++++-...-...+++.+.+.+- ....+...+ .... ..+.+|.++-.-.
T Consensus 164 g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~--~~~~vd~vld~~g 240 (341)
T cd05281 164 GKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKKMGADVVINPREEDVVEV-KSVT--DGTGVDVVLEMSG 240 (341)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCcceeeCcccccHHHH-HHHc--CCCCCCEEEECCC
Confidence 45555578765 67778888876433788886544333334445543211 111122211 2212 2346888764311
Q ss_pred CCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919 309 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 343 (416)
Q Consensus 309 dpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~ 343 (416)
....+..+.+.|+++|.+...
T Consensus 241 --------------~~~~~~~~~~~l~~~G~~v~~ 261 (341)
T cd05281 241 --------------NPKAIEQGLKALTPGGRVSIL 261 (341)
T ss_pred --------------CHHHHHHHHHHhccCCEEEEE
Confidence 124567788999999998764
No 368
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=48.46 E-value=1.4e+02 Score=31.85 Aligned_cols=104 Identities=13% Similarity=0.122 Sum_probs=61.6
Q ss_pred CCCeEEEEeccc-cHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcC--------hhhhh-------hhhh
Q 014919 230 AQPLVVDIGSGN-GLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATN--------ATSTF-------RSIV 293 (416)
Q Consensus 230 ~~~~vLDIGCG~-G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~D--------a~~l~-------~~~~ 293 (416)
.+.+|+=+|||. |..++..|+.. ++.++++|.....++.++..|.+.+.+-..+ +.++. ...+
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~l-GA~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~ 242 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSL-GAIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMALF 242 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHHH
Confidence 368999999997 66677777776 4589999998777777777665432221111 11110 0111
Q ss_pred ccCCCceeEEEEECCCCCCCCcchhhhhhhHHH-HHHHHhhccCCcEEEEE
Q 014919 294 ASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSL-VEAVSDLLVHDGKVFLQ 343 (416)
Q Consensus 294 ~~~~~s~D~v~~~fpdpw~k~~h~krRl~~~~~-l~~i~r~LkpgG~l~l~ 343 (416)
...-..+|.++---..| ..+. +.+ .++..+.+||||.+...
T Consensus 243 ~~~~~gaDVVIetag~p--g~~a-------P~lit~~~v~~mkpGgvIVdv 284 (509)
T PRK09424 243 AEQAKEVDIIITTALIP--GKPA-------PKLITAEMVASMKPGSVIVDL 284 (509)
T ss_pred HhccCCCCEEEECCCCC--cccC-------cchHHHHHHHhcCCCCEEEEE
Confidence 00013588886432222 2221 134 48889999999987754
No 369
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=48.45 E-value=1.6e+02 Score=29.22 Aligned_cols=97 Identities=16% Similarity=0.165 Sum_probs=54.3
Q ss_pred CCeEEEEeccc-cHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCC
Q 014919 231 QPLVVDIGSGN-GLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN 309 (416)
Q Consensus 231 ~~~vLDIGCG~-G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpd 309 (416)
+..+|=.|+|. |..++.+|+......++++|....-.+.+++.+.+. ++..+-.++...........+|.++-....
T Consensus 187 g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~g~~~--~i~~~~~~~~~~v~~~~~~~~d~vld~~g~ 264 (365)
T cd08278 187 GSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKELGATH--VINPKEEDLVAAIREITGGGVDYALDTTGV 264 (365)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCcE--EecCCCcCHHHHHHHHhCCCCcEEEECCCC
Confidence 46666678754 667777888765446999997654444445555432 222111111111101013457877532111
Q ss_pred CCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919 310 PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 343 (416)
Q Consensus 310 pw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~ 343 (416)
+..+....+.|+++|++...
T Consensus 265 --------------~~~~~~~~~~l~~~G~~v~~ 284 (365)
T cd08278 265 --------------PAVIEQAVDALAPRGTLALV 284 (365)
T ss_pred --------------cHHHHHHHHHhccCCEEEEe
Confidence 14567888999999998764
No 370
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=48.35 E-value=1.2e+02 Score=29.53 Aligned_cols=97 Identities=11% Similarity=0.092 Sum_probs=53.6
Q ss_pred CCeEEEEeccc-cHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEE-EcChhhhhhhhhccCCCceeEEEEECC
Q 014919 231 QPLVVDIGSGN-GLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFI-ATNATSTFRSIVASYPGKLILVSIQCP 308 (416)
Q Consensus 231 ~~~vLDIGCG~-G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~-~~Da~~l~~~~~~~~~~s~D~v~~~fp 308 (416)
+..+|=.|+|. |..+..+|+.....+++.++.+..-.+.+++.|.+.+--. ..+..+.+.... ....+|.++-...
T Consensus 164 g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~--~~~~~d~v~d~~g 241 (341)
T PRK05396 164 GEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARKMGATRAVNVAKEDLRDVMAELG--MTEGFDVGLEMSG 241 (341)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCcEEecCccccHHHHHHHhc--CCCCCCEEEECCC
Confidence 44555578765 7777888887643367888754443444445555322111 111111111111 2346787754211
Q ss_pred CCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919 309 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 343 (416)
Q Consensus 309 dpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~ 343 (416)
....+..+.+.|+++|.+...
T Consensus 242 --------------~~~~~~~~~~~l~~~G~~v~~ 262 (341)
T PRK05396 242 --------------APSAFRQMLDNMNHGGRIAML 262 (341)
T ss_pred --------------CHHHHHHHHHHHhcCCEEEEE
Confidence 125677888999999998875
No 371
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=48.23 E-value=1.5e+02 Score=28.98 Aligned_cols=96 Identities=13% Similarity=0.054 Sum_probs=52.5
Q ss_pred CCeEEEEecc-ccHHHHHHHHhCCCCe-EEEEchHHHHHHHHHHhCCCcEE-EEEcChhhhhhhhhccCCCceeEEEEEC
Q 014919 231 QPLVVDIGSG-NGLFLLGMARKRKDLN-FLGLELVTHCRDSLQLSGITNGY-FIATNATSTFRSIVASYPGKLILVSIQC 307 (416)
Q Consensus 231 ~~~vLDIGCG-~G~~~~~lA~~~p~~~-~iGvD~~~~a~~~a~~~~l~nv~-f~~~Da~~l~~~~~~~~~~s~D~v~~~f 307 (416)
++.+|=.||| .|..++.+|+.. +.+ +++++....-.+.+++.+.+.+. ....+..+-+.... ....+|.++-..
T Consensus 162 g~~vlI~~~g~vg~~a~~la~~~-G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~--~~~~~d~vld~~ 238 (340)
T TIGR00692 162 GKSVLVTGAGPIGLMAIAVAKAS-GAYPVIVSDPNEYRLELAKKMGATYVVNPFKEDVVKEVADLT--DGEGVDVFLEMS 238 (340)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHhCCcEEEcccccCHHHHHHHhc--CCCCCCEEEECC
Confidence 3444446775 466777788876 454 88887655444444555553211 11112211111111 234588775421
Q ss_pred CCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919 308 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 343 (416)
Q Consensus 308 pdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~ 343 (416)
. ....+..+.+.|+++|++...
T Consensus 239 g--------------~~~~~~~~~~~l~~~g~~v~~ 260 (340)
T TIGR00692 239 G--------------APKALEQGLQAVTPGGRVSLL 260 (340)
T ss_pred C--------------CHHHHHHHHHhhcCCCEEEEE
Confidence 1 125677889999999988764
No 372
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=48.23 E-value=2.4e+02 Score=26.55 Aligned_cols=72 Identities=14% Similarity=0.201 Sum_probs=43.8
Q ss_pred CCCeEEEEeccccH--HHHH--HHHhCCCCeEEEEchH----HHHHHHHHHhCCCc-EEEEEcChh-hhhhhhhccCCCc
Q 014919 230 AQPLVVDIGSGNGL--FLLG--MARKRKDLNFLGLELV----THCRDSLQLSGITN-GYFIATNAT-STFRSIVASYPGK 299 (416)
Q Consensus 230 ~~~~vLDIGCG~G~--~~~~--lA~~~p~~~~iGvD~~----~~a~~~a~~~~l~n-v~f~~~Da~-~l~~~~~~~~~~s 299 (416)
+.+.++|+.|+-|. .++. .|.++.+.+++.|--. ....+.....++.+ ++|+.++.. ++++. -..
T Consensus 41 nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~-----~~~ 115 (218)
T PF07279_consen 41 NAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVMPG-----LKG 115 (218)
T ss_pred cceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHHhh-----ccC
Confidence 57899999877542 3444 4455677788887631 12233333456655 699999854 44332 245
Q ss_pred eeEEEEE
Q 014919 300 LILVSIQ 306 (416)
Q Consensus 300 ~D~v~~~ 306 (416)
+|.+.+-
T Consensus 116 iDF~vVD 122 (218)
T PF07279_consen 116 IDFVVVD 122 (218)
T ss_pred CCEEEEe
Confidence 8888774
No 373
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=47.17 E-value=2.4e+02 Score=27.53 Aligned_cols=70 Identities=19% Similarity=0.081 Sum_probs=40.2
Q ss_pred CeEEEEecc-ccH-HHHHHHHhCCC-CeEEEE-chH-HHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEE
Q 014919 232 PLVVDIGSG-NGL-FLLGMARKRKD-LNFLGL-ELV-THCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 306 (416)
Q Consensus 232 ~~vLDIGCG-~G~-~~~~lA~~~p~-~~~iGv-D~~-~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~ 306 (416)
.++-=|||| .+. .-....+..++ ..++++ |.. +++.+-+++.+.+ -...|..+++ .+..+|.|++.
T Consensus 4 irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~---~~~~~~~~ll------~~~~iD~V~Ia 74 (342)
T COG0673 4 IRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGIA---KAYTDLEELL------ADPDIDAVYIA 74 (342)
T ss_pred eEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCCC---cccCCHHHHh------cCCCCCEEEEc
Confidence 456779998 331 12333334455 366666 653 4455555666655 3345665553 35669999988
Q ss_pred CCCC
Q 014919 307 CPNP 310 (416)
Q Consensus 307 fpdp 310 (416)
-|+.
T Consensus 75 tp~~ 78 (342)
T COG0673 75 TPNA 78 (342)
T ss_pred CCCh
Confidence 6654
No 374
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=47.03 E-value=1.9e+02 Score=29.43 Aligned_cols=109 Identities=9% Similarity=-0.029 Sum_probs=55.0
Q ss_pred CCeEEEEecc-ccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEc---ChhhhhhhhhccCCCceeEEEEE
Q 014919 231 QPLVVDIGSG-NGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIAT---NATSTFRSIVASYPGKLILVSIQ 306 (416)
Q Consensus 231 ~~~vLDIGCG-~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~---Da~~l~~~~~~~~~~s~D~v~~~ 306 (416)
+..||=.|+| .|..++.+|+..--..++.+|....-++.+++.|.. .+... +..+-+.+.. ....+|.++-.
T Consensus 186 g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~Ga~--~v~~~~~~~~~~~v~~~~--~~~g~Dvvid~ 261 (393)
T TIGR02819 186 GSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSFGCE--TVDLSKDATLPEQIEQIL--GEPEVDCAVDC 261 (393)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHcCCe--EEecCCcccHHHHHHHHc--CCCCCcEEEEC
Confidence 3444447775 355566677776444566677655555556666764 22221 2222112211 22357877532
Q ss_pred CCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919 307 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 343 (416)
Q Consensus 307 fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~ 343 (416)
-..|.+...|.....-....++...+.+++||++.+.
T Consensus 262 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~ 298 (393)
T TIGR02819 262 VGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIP 298 (393)
T ss_pred CCCccccccccccccchHHHHHHHHHHhhCCCEEEEe
Confidence 2222110001000001124688889999999999874
No 375
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=46.51 E-value=1.7e+02 Score=28.61 Aligned_cols=96 Identities=15% Similarity=0.086 Sum_probs=52.7
Q ss_pred CCeEEEEeccc-cHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEE-EcC----hhhhhhhhhccCCCceeEEE
Q 014919 231 QPLVVDIGSGN-GLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFI-ATN----ATSTFRSIVASYPGKLILVS 304 (416)
Q Consensus 231 ~~~vLDIGCG~-G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~-~~D----a~~l~~~~~~~~~~s~D~v~ 304 (416)
+..+|=.|+|. |..+..+|+......++.++....-...++..+.+++--. ..+ ...+ .... ....+|.++
T Consensus 163 g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~-~~~~--~~~~~d~vl 239 (343)
T cd05285 163 GDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKELGATHTVNVRTEDTPESAEKI-AELL--GGKGPDVVI 239 (343)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCcEEeccccccchhHHHHH-HHHh--CCCCCCEEE
Confidence 44555578876 7788888888643337888754333333333444332111 111 1222 2222 234588775
Q ss_pred EECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919 305 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 343 (416)
Q Consensus 305 ~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~ 343 (416)
-... . ...+....+.|+++|++...
T Consensus 240 d~~g-~-------------~~~~~~~~~~l~~~G~~v~~ 264 (343)
T cd05285 240 ECTG-A-------------ESCIQTAIYATRPGGTVVLV 264 (343)
T ss_pred ECCC-C-------------HHHHHHHHHHhhcCCEEEEE
Confidence 4311 0 13678889999999998764
No 376
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=46.11 E-value=48 Score=32.75 Aligned_cols=64 Identities=8% Similarity=0.029 Sum_probs=49.6
Q ss_pred hCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeC
Q 014919 273 SGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD 345 (416)
Q Consensus 273 ~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD 345 (416)
+++.+|.+.++|+.+++.. -+.+.+|.+.+.-...|..+..- .+++.++.+-+.+|..++|.|-
T Consensus 304 ~n~~RV~ihha~~iE~l~~---k~ag~Vdr~iLlDaqdwmtd~ql------n~lws~isrta~~gA~VifRta 367 (414)
T COG5379 304 QNLRRVAIHHADIIELLAG---KPAGNVDRYILLDAQDWMTDGQL------NSLWSEISRTAEAGARVIFRTA 367 (414)
T ss_pred hhhhheeeecccHHHHhcc---CCCCCcceEEEecchhhcccchH------HHHHHHHhhccCCCcEEEEecc
Confidence 3456799999999998642 14688999888766667655432 4889999999999999999873
No 377
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=45.89 E-value=1.1e+02 Score=29.80 Aligned_cols=85 Identities=14% Similarity=0.116 Sum_probs=48.4
Q ss_pred CCeEEEEeccc-cHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCC
Q 014919 231 QPLVVDIGSGN-GLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN 309 (416)
Q Consensus 231 ~~~vLDIGCG~-G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpd 309 (416)
+..+|=+|||. |.+++.+|+......++++|....-++.+... .++ |..+. ....+|.++=.-..
T Consensus 145 ~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~-----~~i--~~~~~-------~~~g~Dvvid~~G~ 210 (308)
T TIGR01202 145 VLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY-----EVL--DPEKD-------PRRDYRAIYDASGD 210 (308)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc-----ccc--Chhhc-------cCCCCCEEEECCCC
Confidence 45677778863 66777888887555577788644333332211 111 11110 12347776543111
Q ss_pred CCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919 310 PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 343 (416)
Q Consensus 310 pw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~ 343 (416)
+..++...+.|+++|++.+.
T Consensus 211 --------------~~~~~~~~~~l~~~G~iv~~ 230 (308)
T TIGR01202 211 --------------PSLIDTLVRRLAKGGEIVLA 230 (308)
T ss_pred --------------HHHHHHHHHhhhcCcEEEEE
Confidence 24677888899999998864
No 378
>PRK13699 putative methylase; Provisional
Probab=45.37 E-value=38 Score=31.93 Aligned_cols=33 Identities=21% Similarity=0.429 Sum_probs=27.4
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHH
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVT 264 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~ 264 (416)
.+.+|||-=||+|..+.+..+. +.+++|+|+..
T Consensus 163 ~g~~vlDpf~Gsgtt~~aa~~~--~r~~~g~e~~~ 195 (227)
T PRK13699 163 PNAIVLDPFAGSGSTCVAALQS--GRRYIGIELLE 195 (227)
T ss_pred CCCEEEeCCCCCCHHHHHHHHc--CCCEEEEecCH
Confidence 5789999999999988876655 67999999743
No 379
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=44.80 E-value=70 Score=25.60 Aligned_cols=20 Identities=15% Similarity=0.348 Sum_probs=12.6
Q ss_pred EEEEcCCccchHHHHHHHHHHh
Q 014919 10 AAIIGGGNLCNKAAALHFLASR 31 (416)
Q Consensus 10 ~~i~GGaKv~dki~~~~~l~~~ 31 (416)
|+|+||- .+...-+++++++
T Consensus 2 vliVGG~--~~~~~~~~~~~~~ 21 (97)
T PF10087_consen 2 VLIVGGR--EDRERRYKRILEK 21 (97)
T ss_pred EEEEcCC--cccHHHHHHHHHH
Confidence 6778883 3455666666666
No 380
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=44.75 E-value=41 Score=28.84 Aligned_cols=32 Identities=13% Similarity=0.010 Sum_probs=19.4
Q ss_pred EEecccc--HHHHHHH--HhCCCCeEEEEchHHHHH
Q 014919 236 DIGSGNG--LFLLGMA--RKRKDLNFLGLELVTHCR 267 (416)
Q Consensus 236 DIGCG~G--~~~~~lA--~~~p~~~~iGvD~~~~a~ 267 (416)
|||+..| .....++ ...|...++++|-.....
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~ 36 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNF 36 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHH
Confidence 8999999 6666654 467899999999654433
No 381
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=44.69 E-value=2e+02 Score=28.13 Aligned_cols=94 Identities=12% Similarity=0.109 Sum_probs=56.2
Q ss_pred CCeEEEEec--cccHHHHHHHHhCCCCeEEEEchHHHHHHHHHH-hCCCcEEE-EEc-ChhhhhhhhhccCCCceeEEEE
Q 014919 231 QPLVVDIGS--GNGLFLLGMARKRKDLNFLGLELVTHCRDSLQL-SGITNGYF-IAT-NATSTFRSIVASYPGKLILVSI 305 (416)
Q Consensus 231 ~~~vLDIGC--G~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~-~~l~nv~f-~~~-Da~~l~~~~~~~~~~s~D~v~~ 305 (416)
+..+|=.|+ |.|..++.+|+.. +.++++++.+..-.+.+++ .|.+.+-- -.. +..+.+.... .+.+|.++-
T Consensus 152 g~~VlI~Ga~G~vG~~aiqlAk~~-G~~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~---~~gvd~v~d 227 (338)
T cd08295 152 GETVFVSAASGAVGQLVGQLAKLK-GCYVVGSAGSDEKVDLLKNKLGFDDAFNYKEEPDLDAALKRYF---PNGIDIYFD 227 (338)
T ss_pred CCEEEEecCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHhcCCceeEEcCCcccHHHHHHHhC---CCCcEEEEE
Confidence 577887886 6788888899875 5688888765444444444 56543311 111 2222112211 246887753
Q ss_pred ECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919 306 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 343 (416)
Q Consensus 306 ~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~ 343 (416)
... ...+....++|+++|++...
T Consensus 228 ~~g---------------~~~~~~~~~~l~~~G~iv~~ 250 (338)
T cd08295 228 NVG---------------GKMLDAVLLNMNLHGRIAAC 250 (338)
T ss_pred CCC---------------HHHHHHHHHHhccCcEEEEe
Confidence 211 14567788999999998763
No 382
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=44.56 E-value=1.1e+02 Score=29.35 Aligned_cols=83 Identities=16% Similarity=0.061 Sum_probs=44.8
Q ss_pred EEEEeccc--cHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCCCC
Q 014919 234 VVDIGSGN--GLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPD 311 (416)
Q Consensus 234 vLDIGCG~--G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdpw 311 (416)
|.=||+|. |.++..|+++ +.+++++|......+.+...+.- .....+.. . -...|.|++..|...
T Consensus 3 I~IIG~G~mG~sla~~L~~~--g~~V~~~d~~~~~~~~a~~~g~~--~~~~~~~~-~--------~~~aDlVilavp~~~ 69 (279)
T PRK07417 3 IGIVGLGLIGGSLGLDLRSL--GHTVYGVSRRESTCERAIERGLV--DEASTDLS-L--------LKDCDLVILALPIGL 69 (279)
T ss_pred EEEEeecHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHCCCc--ccccCCHh-H--------hcCCCEEEEcCCHHH
Confidence 44467664 2333334333 56899999876666655554431 11111111 1 134688887654321
Q ss_pred CCCcchhhhhhhHHHHHHHHhhccCCcEE
Q 014919 312 FNRPEHRWRMVQRSLVEAVSDLLVHDGKV 340 (416)
Q Consensus 312 ~k~~h~krRl~~~~~l~~i~r~LkpgG~l 340 (416)
..++++++...++++-.+
T Consensus 70 -----------~~~~~~~l~~~l~~~~ii 87 (279)
T PRK07417 70 -----------LLPPSEQLIPALPPEAIV 87 (279)
T ss_pred -----------HHHHHHHHHHhCCCCcEE
Confidence 136678888888877544
No 383
>PRK10537 voltage-gated potassium channel; Provisional
Probab=44.47 E-value=1.7e+02 Score=30.09 Aligned_cols=103 Identities=6% Similarity=-0.007 Sum_probs=58.7
Q ss_pred ccccHHHHHHHHhC--CCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCCCCCCCcc
Q 014919 239 SGNGLFLLGMARKR--KDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPE 316 (416)
Q Consensus 239 CG~G~~~~~lA~~~--p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdpw~k~~h 316 (416)
||.|..+..+++.. .+..++.+|-... + +...++..++.+|+.+. +..-...-+..+.+.+..+|.-
T Consensus 246 ~G~g~lg~~v~~~L~~~g~~vvVId~d~~--~---~~~~~g~~vI~GD~td~-e~L~~AgI~~A~aVI~~t~dD~----- 314 (393)
T PRK10537 246 CGHSPLAINTYLGLRQRGQAVTVIVPLGL--E---HRLPDDADLIPGDSSDS-AVLKKAGAARARAILALRDNDA----- 314 (393)
T ss_pred ECCChHHHHHHHHHHHCCCCEEEEECchh--h---hhccCCCcEEEeCCCCH-HHHHhcCcccCCEEEEcCCChH-----
Confidence 66677777776642 2457888874311 1 11123567899999764 2111111245566766543321
Q ss_pred hhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCC
Q 014919 317 HRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGK 362 (416)
Q Consensus 317 ~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~ 362 (416)
...+.-...|.+.|+..++...++++..+ .+++.|.
T Consensus 315 ------~Nl~ivL~ar~l~p~~kIIa~v~~~~~~~----~L~~~Ga 350 (393)
T PRK10537 315 ------DNAFVVLAAKEMSSDVKTVAAVNDSKNLE----KIKRVHP 350 (393)
T ss_pred ------HHHHHHHHHHHhCCCCcEEEEECCHHHHH----HHHhcCC
Confidence 12445566888899999998877766533 3445444
No 384
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=43.29 E-value=65 Score=33.07 Aligned_cols=41 Identities=20% Similarity=0.321 Sum_probs=30.3
Q ss_pred CCCcEEEEEcC-CccchHHHHHHHHHHhcCeEEEehHHHHHH
Q 014919 5 DEKPYAAIIGG-GNLCNKAAALHFLASRCDGLIFVGLMSFQI 45 (416)
Q Consensus 5 ~~~p~~~i~GG-aKv~dki~~~~~l~~~~d~~~~gG~~a~~f 45 (416)
+.+|.++|+|| .|--|-=.+++.+.+.+|.+++.|--+..+
T Consensus 311 ~~~~~i~vlG~~~~~~d~~~l~~~~~~~~~~v~~~G~~~~~i 352 (418)
T PRK00683 311 VGNQVIVILGGRNKGCDFSSLLPVLRQTAKHVVAMGECRQEI 352 (418)
T ss_pred CCCCEEEEEcCCCCCCCHHHHHHHHHHhCCEEEEECCCHHHH
Confidence 45688999998 566565577777777799999988644433
No 385
>PLN02702 L-idonate 5-dehydrogenase
Probab=42.80 E-value=2.1e+02 Score=28.25 Aligned_cols=99 Identities=15% Similarity=0.114 Sum_probs=55.4
Q ss_pred CCeEEEEecc-ccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEE---cChhhhhhhhhccCCCceeEEEEE
Q 014919 231 QPLVVDIGSG-NGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIA---TNATSTFRSIVASYPGKLILVSIQ 306 (416)
Q Consensus 231 ~~~vLDIGCG-~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~---~Da~~l~~~~~~~~~~s~D~v~~~ 306 (416)
+..+|=+|+| .|..++.+|++..-..++.+|......+.++..+.+.+.... .+..+-+........+.+|.++-.
T Consensus 182 g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vid~ 261 (364)
T PLN02702 182 ETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAKQLGADEIVLVSTNIEDVESEVEEIQKAMGGGIDVSFDC 261 (364)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEecCcccccHHHHHHHHhhhcCCCCCEEEEC
Confidence 4566666875 466677788876544688998765555555556654332221 122111111100013457877542
Q ss_pred CCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919 307 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 343 (416)
Q Consensus 307 fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~ 343 (416)
-.. ...+....+.|+++|++...
T Consensus 262 ~g~--------------~~~~~~~~~~l~~~G~~v~~ 284 (364)
T PLN02702 262 VGF--------------NKTMSTALEATRAGGKVCLV 284 (364)
T ss_pred CCC--------------HHHHHHHHHHHhcCCEEEEE
Confidence 110 24578889999999998754
No 386
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=41.97 E-value=2e+02 Score=29.42 Aligned_cols=95 Identities=9% Similarity=0.053 Sum_probs=53.9
Q ss_pred EEEEeccccHHHHHHHHhC--CCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCCCC
Q 014919 234 VVDIGSGNGLFLLGMARKR--KDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPD 311 (416)
Q Consensus 234 vLDIGCG~G~~~~~lA~~~--p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdpw 311 (416)
++=+|| |.++..+|+.. .+..++.+|......+.+++. ..+.++.+|+.+. ...-...-...|.+++..++..
T Consensus 3 viIiG~--G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~--~~~~~~~gd~~~~-~~l~~~~~~~a~~vi~~~~~~~ 77 (453)
T PRK09496 3 IIIVGA--GQVGYTLAENLSGENNDVTVIDTDEERLRRLQDR--LDVRTVVGNGSSP-DVLREAGAEDADLLIAVTDSDE 77 (453)
T ss_pred EEEECC--CHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhh--cCEEEEEeCCCCH-HHHHHcCCCcCCEEEEecCChH
Confidence 444555 88888888752 367899999755544444321 2477888988653 1111112356888877655432
Q ss_pred CCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919 312 FNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 344 (416)
Q Consensus 312 ~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t 344 (416)
. ..++....+.+.|.-.++..+
T Consensus 78 ----------~-n~~~~~~~r~~~~~~~ii~~~ 99 (453)
T PRK09496 78 ----------T-NMVACQIAKSLFGAPTTIARV 99 (453)
T ss_pred ----------H-HHHHHHHHHHhcCCCeEEEEE
Confidence 1 133445556665555555544
No 387
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=41.83 E-value=2e+02 Score=28.54 Aligned_cols=95 Identities=14% Similarity=0.091 Sum_probs=53.1
Q ss_pred CCeEEEEecc-ccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhh---hhhhhccCCCceeEEEEE
Q 014919 231 QPLVVDIGSG-NGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATST---FRSIVASYPGKLILVSIQ 306 (416)
Q Consensus 231 ~~~vLDIGCG-~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l---~~~~~~~~~~s~D~v~~~ 306 (416)
+..+|=.|+| .|..++.+|+...-..+++++....-.+.+...+.. .++..+-..+ +.... ....+|.++-.
T Consensus 183 g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~~~g~~--~vv~~~~~~~~~~l~~~~--~~~~vd~vld~ 258 (363)
T cd08279 183 GDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELARRFGAT--HTVNASEDDAVEAVRDLT--DGRGADYAFEA 258 (363)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHhCCe--EEeCCCCccHHHHHHHHc--CCCCCCEEEEc
Confidence 4566666885 577788888876433488887544333444444543 2222221111 11111 23458876532
Q ss_pred CCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919 307 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 343 (416)
Q Consensus 307 fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~ 343 (416)
... ...+....+.|+++|++...
T Consensus 259 -~~~-------------~~~~~~~~~~l~~~G~~v~~ 281 (363)
T cd08279 259 -VGR-------------AATIRQALAMTRKGGTAVVV 281 (363)
T ss_pred -CCC-------------hHHHHHHHHHhhcCCeEEEE
Confidence 110 14577889999999998753
No 388
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=41.58 E-value=95 Score=29.73 Aligned_cols=117 Identities=18% Similarity=0.147 Sum_probs=70.9
Q ss_pred CCeEEEEeccccHHHHHHHHhC----C-----CCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhh-----hhhhccC
Q 014919 231 QPLVVDIGSGNGLFLLGMARKR----K-----DLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTF-----RSIVASY 296 (416)
Q Consensus 231 ~~~vLDIGCG~G~~~~~lA~~~----p-----~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~-----~~~~~~~ 296 (416)
-.+++|+....|.++..|+++. | +..+++||+-.- ..++.|.-+++|+...- -+.| .
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~M-------aPI~GV~qlq~DIT~~stae~Ii~hf--g 112 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPM-------APIEGVIQLQGDITSASTAEAIIEHF--G 112 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccC-------CccCceEEeecccCCHhHHHHHHHHh--C
Confidence 5789999999999999999862 1 123999996221 23566777888886531 1234 3
Q ss_pred CCceeEEEEEC-CCCCCCCcchhhhhhh----HHHHHHHHhhccCCcEEEEE---e-CcHHHHHHHHHHHH
Q 014919 297 PGKLILVSIQC-PNPDFNRPEHRWRMVQ----RSLVEAVSDLLVHDGKVFLQ---S-DIEEVMLRMKQQFL 358 (416)
Q Consensus 297 ~~s~D~v~~~f-pdpw~k~~h~krRl~~----~~~l~~i~r~LkpgG~l~l~---t-D~~~~~~~~~~~~~ 358 (416)
.+..|+|.+-- ||- .--|.-..-++ ...|.....+|||||.|+-+ . |..-++..|...|.
T Consensus 113 gekAdlVvcDGAPDv--TGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg~~tslLysql~~ff~ 181 (294)
T KOG1099|consen 113 GEKADLVVCDGAPDV--TGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFRGRDTSLLYSQLRKFFK 181 (294)
T ss_pred CCCccEEEeCCCCCc--cccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhccCchHHHHHHHHHHhh
Confidence 45778886542 222 22333222223 24567778899999998754 2 33334444544444
No 389
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=41.58 E-value=1.6e+02 Score=23.67 Aligned_cols=82 Identities=9% Similarity=0.016 Sum_probs=49.2
Q ss_pred eEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCCCCC
Q 014919 233 LVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDF 312 (416)
Q Consensus 233 ~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdpw~ 312 (416)
.|| +-||+|..+..++++ ..+.++++|++ +.+...+..++ .+. ...+|.|++- |.
T Consensus 5 ~IL-l~C~~G~sSS~l~~k--------------~~~~~~~~gi~-~~v~a~~~~~~-~~~----~~~~Dvill~---pq- 59 (95)
T TIGR00853 5 NIL-LLCAAGMSTSLLVNK--------------MNKAAEEYGVP-VKIAAGSYGAA-GEK----LDDADVVLLA---PQ- 59 (95)
T ss_pred EEE-EECCCchhHHHHHHH--------------HHHHHHHCCCc-EEEEEecHHHH-Hhh----cCCCCEEEEC---ch-
Confidence 444 889999887766644 33445566764 78888888776 222 2457888764 21
Q ss_pred CCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHH
Q 014919 313 NRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEV 349 (416)
Q Consensus 313 k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~ 349 (416)
- ...++++.+.+.+-|.=+...|...|
T Consensus 60 ----i------~~~~~~i~~~~~~~~ipv~~I~~~~Y 86 (95)
T TIGR00853 60 ----V------AYMLPDLKKETDKKGIPVEVINGAQY 86 (95)
T ss_pred ----H------HHHHHHHHHHhhhcCCCEEEeChhhc
Confidence 1 12356666666665554444565554
No 390
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=41.40 E-value=2.6e+02 Score=26.79 Aligned_cols=95 Identities=14% Similarity=0.050 Sum_probs=55.9
Q ss_pred CCeEEEEe--ccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECC
Q 014919 231 QPLVVDIG--SGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP 308 (416)
Q Consensus 231 ~~~vLDIG--CG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fp 308 (416)
+..+|=.| -|.|..++.+|+.. +.++++++.+..-.+.+++.|.+.+ +..+-.++.........+.+|.++-. .
T Consensus 144 g~~vlI~ga~g~vG~~aiqlA~~~-G~~vi~~~~s~~~~~~l~~~Ga~~v--i~~~~~~~~~~v~~~~~~gvd~vld~-~ 219 (329)
T cd08294 144 GETVVVNGAAGAVGSLVGQIAKIK-GCKVIGCAGSDDKVAWLKELGFDAV--FNYKTVSLEEALKEAAPDGIDCYFDN-V 219 (329)
T ss_pred CCEEEEecCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHcCCCEE--EeCCCccHHHHHHHHCCCCcEEEEEC-C
Confidence 56676666 46788888899885 6689998865554555555665432 22211111111101123458877532 1
Q ss_pred CCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919 309 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 343 (416)
Q Consensus 309 dpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~ 343 (416)
....++...+.|+++|++...
T Consensus 220 --------------g~~~~~~~~~~l~~~G~iv~~ 240 (329)
T cd08294 220 --------------GGEFSSTVLSHMNDFGRVAVC 240 (329)
T ss_pred --------------CHHHHHHHHHhhccCCEEEEE
Confidence 014567888999999998753
No 391
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=41.28 E-value=2.1e+02 Score=29.09 Aligned_cols=95 Identities=19% Similarity=0.172 Sum_probs=52.8
Q ss_pred CCeEEEEe-cc-ccHHHHHHHHhCC--CCeEEEEchHHHHHHHHHHh--------CCCcEEEEEc----Chhhhhhhhhc
Q 014919 231 QPLVVDIG-SG-NGLFLLGMARKRK--DLNFLGLELVTHCRDSLQLS--------GITNGYFIAT----NATSTFRSIVA 294 (416)
Q Consensus 231 ~~~vLDIG-CG-~G~~~~~lA~~~p--~~~~iGvD~~~~a~~~a~~~--------~l~nv~f~~~----Da~~l~~~~~~ 294 (416)
+..||=+| || -|..++.+|+... ..+++++|.+..-++.+++. |.. ..++.. +..+.+.+..
T Consensus 176 g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~-~~~i~~~~~~~~~~~v~~~t- 253 (410)
T cd08238 176 GGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGIE-LLYVNPATIDDLHATLMELT- 253 (410)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCce-EEEECCCccccHHHHHHHHh-
Confidence 46777787 44 6777888888742 24799999765544444443 221 122221 2222112111
Q ss_pred cCCCceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEE
Q 014919 295 SYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 342 (416)
Q Consensus 295 ~~~~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l 342 (416)
....+|.++..-.. +..+....+.|+++|.+++
T Consensus 254 -~g~g~D~vid~~g~--------------~~~~~~a~~~l~~~G~~v~ 286 (410)
T cd08238 254 -GGQGFDDVFVFVPV--------------PELVEEADTLLAPDGCLNF 286 (410)
T ss_pred -CCCCCCEEEEcCCC--------------HHHHHHHHHHhccCCeEEE
Confidence 23358877653211 2567778899998887654
No 392
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=41.02 E-value=2.1e+02 Score=28.45 Aligned_cols=96 Identities=14% Similarity=0.086 Sum_probs=52.3
Q ss_pred CCeEEEEecc-ccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEc---ChhhhhhhhhccCCCceeEEEEE
Q 014919 231 QPLVVDIGSG-NGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIAT---NATSTFRSIVASYPGKLILVSIQ 306 (416)
Q Consensus 231 ~~~vLDIGCG-~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~---Da~~l~~~~~~~~~~s~D~v~~~ 306 (416)
+..||=+|+| .|..++.+|+...-.+++++|....-++.+++.+.+.+--... +..+.+.+.. .+.+|.++-.
T Consensus 185 g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~---~~g~d~vid~ 261 (365)
T cd08277 185 GSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEFGATDFINPKDSDKPVSEVIREMT---GGGVDYSFEC 261 (365)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCCcEeccccccchHHHHHHHHh---CCCCCEEEEC
Confidence 5666667874 3455666777764347999997554455555556543211111 1111112111 2457877532
Q ss_pred CCCCCCCCcchhhhhhhHHHHHHHHhhccCC-cEEEEE
Q 014919 307 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHD-GKVFLQ 343 (416)
Q Consensus 307 fpdpw~k~~h~krRl~~~~~l~~i~r~Lkpg-G~l~l~ 343 (416)
.- ....+....+.|+++ |++.+.
T Consensus 262 -~g-------------~~~~~~~~~~~l~~~~G~~v~~ 285 (365)
T cd08277 262 -TG-------------NADLMNEALESTKLGWGVSVVV 285 (365)
T ss_pred -CC-------------ChHHHHHHHHhcccCCCEEEEE
Confidence 10 025667788889885 888764
No 393
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=40.89 E-value=1.3e+02 Score=28.82 Aligned_cols=93 Identities=15% Similarity=0.202 Sum_probs=53.9
Q ss_pred HHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCCCCCCCcchhhhhhh
Q 014919 244 FLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQ 323 (416)
Q Consensus 244 ~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdpw~k~~h~krRl~~ 323 (416)
++..|.++.++.+++|+|.....++.+.+.|...-. ..+. +. + ...|+|++--|-. ..
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~--~~~~-~~----~----~~~DlvvlavP~~-----------~~ 58 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEA--STDI-EA----V----EDADLVVLAVPVS-----------AI 58 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEE--ESHH-HH----G----GCCSEEEE-S-HH-----------HH
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeec--cCCH-hH----h----cCCCEEEEcCCHH-----------HH
Confidence 356778888899999999988777777677753221 1221 11 1 2358888763311 23
Q ss_pred HHHHHHHHhhccCCcEEEEEeCc-HHHHHHHHHHHH
Q 014919 324 RSLVEAVSDLLVHDGKVFLQSDI-EEVMLRMKQQFL 358 (416)
Q Consensus 324 ~~~l~~i~r~LkpgG~l~l~tD~-~~~~~~~~~~~~ 358 (416)
.++++++...|++|..+.=.+-. ....+.+.+.+.
T Consensus 59 ~~~l~~~~~~~~~~~iv~Dv~SvK~~~~~~~~~~~~ 94 (258)
T PF02153_consen 59 EDVLEEIAPYLKPGAIVTDVGSVKAPIVEAMERLLP 94 (258)
T ss_dssp HHHHHHHHCGS-TTSEEEE--S-CHHHHHHHHHHHT
T ss_pred HHHHHHhhhhcCCCcEEEEeCCCCHHHHHHHHHhcC
Confidence 58899999999998876644333 233444444433
No 394
>PRK11579 putative oxidoreductase; Provisional
Probab=40.40 E-value=1.8e+02 Score=28.81 Aligned_cols=69 Identities=16% Similarity=0.130 Sum_probs=39.0
Q ss_pred CeEEEEeccc-cH-HHHHHHHhCCCCeEEEE-chHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECC
Q 014919 232 PLVVDIGSGN-GL-FLLGMARKRKDLNFLGL-ELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP 308 (416)
Q Consensus 232 ~~vLDIGCG~-G~-~~~~lA~~~p~~~~iGv-D~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fp 308 (416)
-+|.=||||. |. +........|+.+++++ |..... +.. ....+.+ ..|..+++ .+..+|.|++.-|
T Consensus 5 irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~---~~~-~~~~~~~-~~~~~ell------~~~~vD~V~I~tp 73 (346)
T PRK11579 5 IRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATK---VKA-DWPTVTV-VSEPQHLF------NDPNIDLIVIPTP 73 (346)
T ss_pred ceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHH---HHh-hCCCCce-eCCHHHHh------cCCCCCEEEEcCC
Confidence 4677899987 43 33333445788888885 443221 111 1222322 45666653 3567999998766
Q ss_pred CCC
Q 014919 309 NPD 311 (416)
Q Consensus 309 dpw 311 (416)
+..
T Consensus 74 ~~~ 76 (346)
T PRK11579 74 NDT 76 (346)
T ss_pred cHH
Confidence 554
No 395
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=40.31 E-value=35 Score=32.25 Aligned_cols=35 Identities=11% Similarity=0.130 Sum_probs=26.3
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCC--CeEEEEchHH
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRKD--LNFLGLELVT 264 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p~--~~~iGvD~~~ 264 (416)
.+-.+-|=.||.|..+..+.-.+++ .+++|-|+..
T Consensus 51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~ 87 (246)
T PF11599_consen 51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDE 87 (246)
T ss_dssp S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-H
T ss_pred CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCH
Confidence 3567899999999999888877765 4899999643
No 396
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=40.13 E-value=86 Score=31.03 Aligned_cols=57 Identities=9% Similarity=0.061 Sum_probs=43.8
Q ss_pred CceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCC
Q 014919 298 GKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKG 363 (416)
Q Consensus 298 ~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~ 363 (416)
..+|.+.+. |+|.+. ..+.-|..+.+.|.|||.+++.-+.++-.+...+++++++..
T Consensus 36 ~~~d~~l~~----~pK~~~-----e~e~qLa~ll~~~~~g~~i~v~g~~~~g~~s~~k~l~~~~~~ 92 (300)
T COG2813 36 DDFDAVLLY----WPKHKA-----EAEFQLAQLLARLPPGGEIVVVGEKRDGVRSAEKMLEKYGGP 92 (300)
T ss_pred CCCCEEEEE----ccCchH-----HHHHHHHHHHhhCCCCCeEEEEecccchHHHHHHHHHHhcCc
Confidence 478999887 444322 234568889999999999999998888888888888887653
No 397
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=39.87 E-value=56 Score=32.69 Aligned_cols=52 Identities=13% Similarity=0.293 Sum_probs=33.7
Q ss_pred EEEEeccccHHHHHHHHhCCCCeEEEEch----HHHHHHHHHHhCCC-cEEEEEcCh
Q 014919 234 VVDIGSGNGLFLLGMARKRKDLNFLGLEL----VTHCRDSLQLSGIT-NGYFIATNA 285 (416)
Q Consensus 234 vLDIGCG~G~~~~~lA~~~p~~~~iGvD~----~~~a~~~a~~~~l~-nv~f~~~Da 285 (416)
=+|||.|.-.+--.+-.+.-++.|+++|+ ...|..+..+++++ .+..++.+.
T Consensus 106 GiDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~ 162 (419)
T KOG2912|consen 106 GIDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEP 162 (419)
T ss_pred eeeccCchhhhHHhhhchhccceeeeeeccccccchhhccccccccccceeeEEecc
Confidence 47999887766554544444689999996 34555666566654 466666644
No 398
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=39.71 E-value=65 Score=33.33 Aligned_cols=42 Identities=17% Similarity=0.310 Sum_probs=32.9
Q ss_pred CCcEEEEEcC-CccchHHHHHHHHHHhcCeEEEehHHHHHHHH
Q 014919 6 EKPYAAIIGG-GNLCNKAAALHFLASRCDGLIFVGLMSFQIMH 47 (416)
Q Consensus 6 ~~p~~~i~GG-aKv~dki~~~~~l~~~~d~~~~gG~~a~~fl~ 47 (416)
++|.++|+|| .|-.|.-.+++.+.+.+|.+++-|--+..+..
T Consensus 348 ~~~~i~IlGg~~~~~d~~~~~~~l~~~~~~vi~~g~~~~~l~~ 390 (459)
T PRK02705 348 PGPVILIAGGEAKQGDDSAWLKQIKAKAAAVLLFGEAAPTLAQ 390 (459)
T ss_pred CCCeEEEecCccCCCCHHHHHHHHHhheeEEEEECCCHHHHHH
Confidence 3578999998 66777778887777779999998887766544
No 399
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=39.66 E-value=1.9e+02 Score=33.70 Aligned_cols=78 Identities=15% Similarity=0.141 Sum_probs=45.2
Q ss_pred CCeEEEEeccc-cHHHHHHHHhCCCCe-------------EEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccC
Q 014919 231 QPLVVDIGSGN-GLFLLGMARKRKDLN-------------FLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASY 296 (416)
Q Consensus 231 ~~~vLDIGCG~-G~~~~~lA~~~p~~~-------------~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~ 296 (416)
..+|+=||||. |........+.|+.. ++-.|......+++.+ +.+++..+..|+.+. ++... .
T Consensus 569 ~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~-~~~~~~~v~lDv~D~-e~L~~-~ 645 (1042)
T PLN02819 569 SQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVE-GIENAEAVQLDVSDS-ESLLK-Y 645 (1042)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHH-hcCCCceEEeecCCH-HHHHH-h
Confidence 46899999984 766666555667765 6667764333333222 234666666665543 22221 0
Q ss_pred CCceeEEEEECCCCC
Q 014919 297 PGKLILVSIQCPNPD 311 (416)
Q Consensus 297 ~~s~D~v~~~fpdpw 311 (416)
-..+|.|...-|..+
T Consensus 646 v~~~DaVIsalP~~~ 660 (1042)
T PLN02819 646 VSQVDVVISLLPASC 660 (1042)
T ss_pred hcCCCEEEECCCchh
Confidence 134899987766554
No 400
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=39.58 E-value=66 Score=32.34 Aligned_cols=109 Identities=11% Similarity=0.029 Sum_probs=62.3
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCCC
Q 014919 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNP 310 (416)
Q Consensus 231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdp 310 (416)
+..||=+|--...+...|+. ...++.--+... ........+ .++.|- .++... ....+|.+.+..
T Consensus 20 ~~~~l~~~~~~d~~~~~l~~--~~~~~~~~~~~~-~~~~~~~~~-~~~~f~-~~~~~~-------~~~~~d~~~~~~--- 84 (342)
T PRK09489 20 QRRVLFAGDLQDDLPAQLDA--ASVRVHTQQFHH-WQVLSRQMG-DNARFS-LVATAE-------DVADCDTLIYYW--- 84 (342)
T ss_pred CCcEEEEcCcchhhHHhhhc--cceEEehhhhHH-HHHHHhhcC-CceEec-cccCCc-------cCCCCCEEEEEC---
Confidence 45678888777777776652 122333322211 111111112 234442 121111 135799998874
Q ss_pred CCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhC
Q 014919 311 DFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEY 360 (416)
Q Consensus 311 w~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~ 360 (416)
||.+. ...-.|..+.+.|+|||.+++.-++..-.+.+.+.++..
T Consensus 85 -pk~k~-----~~~~~l~~~~~~l~~g~~i~~~G~~~~g~~s~~k~~~~~ 128 (342)
T PRK09489 85 -PKNKQ-----EAQFQLMNLLSLLPVGTDIFVVGENRSGVRSAEKMLADY 128 (342)
T ss_pred -CCCHH-----HHHHHHHHHHHhCCCCCEEEEEEeccccHHHHHHHHHHh
Confidence 34332 224668899999999999999877776666666666664
No 401
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=39.35 E-value=2e+02 Score=27.99 Aligned_cols=93 Identities=13% Similarity=0.129 Sum_probs=54.5
Q ss_pred CeEEEEec--cccHHHHHHHHhCCCC-eEEEEchHHHHHHHHHH-hCCCcEEEEE-cChhhhhhhhhccCCCceeEEEEE
Q 014919 232 PLVVDIGS--GNGLFLLGMARKRKDL-NFLGLELVTHCRDSLQL-SGITNGYFIA-TNATSTFRSIVASYPGKLILVSIQ 306 (416)
Q Consensus 232 ~~vLDIGC--G~G~~~~~lA~~~p~~-~~iGvD~~~~a~~~a~~-~~l~nv~f~~-~Da~~l~~~~~~~~~~s~D~v~~~ 306 (416)
..||=.|. |.|..++.+|+.. ++ ++++++.+..-.+.+.+ .|.+.+-... .+..+.+... .+..+|.++-.
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~-G~~~Vi~~~~s~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~---~~~gvd~vid~ 231 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLL-GCSRVVGICGSDEKCQLLKSELGFDAAINYKTDNVAERLREL---CPEGVDVYFDN 231 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHhcCCcEEEECCCCCHHHHHHHH---CCCCceEEEEC
Confidence 67777775 6788888899886 55 79998865543444433 5654321111 1222211211 13468877632
Q ss_pred CCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919 307 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 343 (416)
Q Consensus 307 fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~ 343 (416)
... ..+....+.|+++|++...
T Consensus 232 ~g~---------------~~~~~~~~~l~~~G~iv~~ 253 (345)
T cd08293 232 VGG---------------EISDTVISQMNENSHIILC 253 (345)
T ss_pred CCc---------------HHHHHHHHHhccCCEEEEE
Confidence 111 2346778899999998863
No 402
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=39.11 E-value=28 Score=37.69 Aligned_cols=34 Identities=21% Similarity=0.319 Sum_probs=29.6
Q ss_pred CCCeEEEEeccccHHHHHHHHhCC-CCeEEEEchH
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLELV 263 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p-~~~~iGvD~~ 263 (416)
....+||+||..|.++...++..| ..-++|||+.
T Consensus 44 ~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~ 78 (780)
T KOG1098|consen 44 KAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLV 78 (780)
T ss_pred ccchheeeccCCcHHHHHHHHhCCCCceEEEeeee
Confidence 368899999999999999898877 5689999974
No 403
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=38.98 E-value=2.6e+02 Score=27.37 Aligned_cols=96 Identities=20% Similarity=0.260 Sum_probs=51.5
Q ss_pred CCeEEEEecc-ccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCC
Q 014919 231 QPLVVDIGSG-NGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN 309 (416)
Q Consensus 231 ~~~vLDIGCG-~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpd 309 (416)
+..+|=.||| .|..+..+|+...-.+++.++....-...+++.+.+ .++..+-..+.........+.+|.++-....
T Consensus 176 ~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~d~vid~~g~ 253 (350)
T cd08240 176 DEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKAAGAD--VVVNGSDPDAAKRIIKAAGGGVDAVIDFVNN 253 (350)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCc--EEecCCCccHHHHHHHHhCCCCcEEEECCCC
Confidence 4666767875 355666677766433788887654434444445543 2222211111011101112257777643110
Q ss_pred CCCCCcchhhhhhhHHHHHHHHhhccCCcEEEE
Q 014919 310 PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 342 (416)
Q Consensus 310 pw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l 342 (416)
...+....+.|+++|++..
T Consensus 254 --------------~~~~~~~~~~l~~~g~~v~ 272 (350)
T cd08240 254 --------------SATASLAFDILAKGGKLVL 272 (350)
T ss_pred --------------HHHHHHHHHHhhcCCeEEE
Confidence 2567888999999999875
No 404
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=38.63 E-value=2.7e+02 Score=27.71 Aligned_cols=96 Identities=13% Similarity=0.101 Sum_probs=52.6
Q ss_pred CCeEEEEecc-ccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEc---ChhhhhhhhhccCCCceeEEEEE
Q 014919 231 QPLVVDIGSG-NGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIAT---NATSTFRSIVASYPGKLILVSIQ 306 (416)
Q Consensus 231 ~~~vLDIGCG-~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~---Da~~l~~~~~~~~~~s~D~v~~~ 306 (416)
+..||=+|+| .|..+..+|+.....+++++|....-++.+++.|.+.+--... +..+.+.+.. .+.+|.++=.
T Consensus 187 g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~v~~~~---~~g~d~vid~ 263 (368)
T cd08300 187 GSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKFGATDCVNPKDHDKPIQQVLVEMT---DGGVDYTFEC 263 (368)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCCEEEcccccchHHHHHHHHHh---CCCCcEEEEC
Confidence 5667777874 3455666777764337999987655455555556543211111 1212111111 2357877532
Q ss_pred CCCCCCCCcchhhhhhhHHHHHHHHhhccCC-cEEEEE
Q 014919 307 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHD-GKVFLQ 343 (416)
Q Consensus 307 fpdpw~k~~h~krRl~~~~~l~~i~r~Lkpg-G~l~l~ 343 (416)
.- .+..+....+.|+++ |++.+.
T Consensus 264 -~g-------------~~~~~~~a~~~l~~~~G~~v~~ 287 (368)
T cd08300 264 -IG-------------NVKVMRAALEACHKGWGTSVII 287 (368)
T ss_pred -CC-------------ChHHHHHHHHhhccCCCeEEEE
Confidence 10 024667778899887 888764
No 405
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=37.73 E-value=99 Score=33.11 Aligned_cols=97 Identities=11% Similarity=0.139 Sum_probs=63.9
Q ss_pred CCeEEEEeccccHHHHHHH---Hh-CCCCeEEEEchHHHHHHHHHHhC----CCcEEEEEcChhhhhhhhhccCCCceeE
Q 014919 231 QPLVVDIGSGNGLFLLGMA---RK-RKDLNFLGLELVTHCRDSLQLSG----ITNGYFIATNATSTFRSIVASYPGKLIL 302 (416)
Q Consensus 231 ~~~vLDIGCG~G~~~~~lA---~~-~p~~~~iGvD~~~~a~~~a~~~~----l~nv~f~~~Da~~l~~~~~~~~~~s~D~ 302 (416)
..+++=+|.|.|-..-... +. .....+++||-..+|....+..+ -..|+++.+|++.+. + +....|.
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~DMR~w~----a-p~eq~DI 442 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSDMRKWN----A-PREQADI 442 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEeccccccC----C-chhhccc
Confidence 3568889999998754432 22 34678999996555544333222 246999999999872 1 2367787
Q ss_pred EEE----ECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEE
Q 014919 303 VSI----QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 342 (416)
Q Consensus 303 v~~----~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l 342 (416)
+.. .|-|- .+.|+-|.-+.+.|||+|..+=
T Consensus 443 ~VSELLGSFGDN----------ELSPECLDG~q~fLkpdgIsIP 476 (649)
T KOG0822|consen 443 IVSELLGSFGDN----------ELSPECLDGAQKFLKPDGISIP 476 (649)
T ss_pred hHHHhhccccCc----------cCCHHHHHHHHhhcCCCceEcc
Confidence 632 23222 2457999999999999987543
No 406
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=36.99 E-value=2.5e+02 Score=29.13 Aligned_cols=107 Identities=16% Similarity=0.128 Sum_probs=57.8
Q ss_pred CeEEEEeccccHHHHHHHHhC-CCCeEEEEchHHHHHHHHHHhCCC--------------cEEEEEcChhhhhhhhhccC
Q 014919 232 PLVVDIGSGNGLFLLGMARKR-KDLNFLGLELVTHCRDSLQLSGIT--------------NGYFIATNATSTFRSIVASY 296 (416)
Q Consensus 232 ~~vLDIGCG~G~~~~~lA~~~-p~~~~iGvD~~~~a~~~a~~~~l~--------------nv~f~~~Da~~l~~~~~~~~ 296 (416)
.+|-=|| .|..+..||... ...+++|+|+.....+.++ .|.. ++.+ ..+...
T Consensus 7 mkI~vIG--lGyvGlpmA~~la~~~~V~g~D~~~~~ve~l~-~G~~~~~e~~~~~l~~~g~l~~-t~~~~~--------- 73 (425)
T PRK15182 7 VKIAIIG--LGYVGLPLAVEFGKSRQVVGFDVNKKRILELK-NGVDVNLETTEEELREARYLKF-TSEIEK--------- 73 (425)
T ss_pred CeEEEEC--cCcchHHHHHHHhcCCEEEEEeCCHHHHHHHH-CcCCCCCCCCHHHHHhhCCeeE-EeCHHH---------
Confidence 4455554 466666666643 2468999998776666554 2321 1111 111111
Q ss_pred CCceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE-eCcHHHHHH
Q 014919 297 PGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ-SDIEEVMLR 352 (416)
Q Consensus 297 ~~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~-tD~~~~~~~ 352 (416)
-...|.+++..|+|-..+.+..-+-+ ....+.+.+.|++|..++.. |-.....+.
T Consensus 74 ~~~advvii~Vptp~~~~~~~dl~~v-~~a~~~i~~~l~~g~lVI~~STv~pgtt~~ 129 (425)
T PRK15182 74 IKECNFYIITVPTPINTYKQPDLTPL-IKASETVGTVLNRGDIVVYESTVYPGCTEE 129 (425)
T ss_pred HcCCCEEEEEcCCCCCCCCCcchHHH-HHHHHHHHHhcCCCCEEEEecCCCCcchHH
Confidence 13468888888888532222111111 13356788899998877775 333334443
No 407
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=36.81 E-value=61 Score=32.77 Aligned_cols=104 Identities=14% Similarity=0.141 Sum_probs=64.7
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHH-----------HHHHHhCCC--cEEEEEcChhhhhhhhhcc-
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCR-----------DSLQLSGIT--NGYFIATNATSTFRSIVAS- 295 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~-----------~~a~~~~l~--nv~f~~~Da~~l~~~~~~~- 295 (416)
.+.+|.|==-|||.+++..|.- ++.++|.|+..+.. .+.++.|.. =+.++.+|...- |.
T Consensus 208 pGdivyDPFVGTGslLvsaa~F--Ga~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~-----~~r 280 (421)
T KOG2671|consen 208 PGDIVYDPFVGTGSLLVSAAHF--GAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNP-----PLR 280 (421)
T ss_pred CCCEEecCccccCceeeehhhh--cceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCc-----chh
Confidence 4789999999999998887754 77899999743322 223334422 255666776543 11
Q ss_pred CCCceeEEEEECCCCCCCCc----------------------------chhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919 296 YPGKLILVSIQCPNPDFNRP----------------------------EHRWRMVQRSLVEAVSDLLVHDGKVFLQ 343 (416)
Q Consensus 296 ~~~s~D~v~~~fpdpw~k~~----------------------------h~krRl~~~~~l~~i~r~LkpgG~l~l~ 343 (416)
....||.|.+ ||-..-| +-..-.+..++|.-.++.|..||++.+-
T Consensus 281 sn~~fDaIvc---DPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w 353 (421)
T KOG2671|consen 281 SNLKFDAIVC---DPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFW 353 (421)
T ss_pred hcceeeEEEe---CCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEe
Confidence 2457898876 3322111 1111112246788889999999998875
No 408
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=36.69 E-value=2.9e+02 Score=27.34 Aligned_cols=96 Identities=16% Similarity=0.100 Sum_probs=52.0
Q ss_pred CCeEEEEecc-ccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEc---ChhhhhhhhhccCCCceeEEEEE
Q 014919 231 QPLVVDIGSG-NGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIAT---NATSTFRSIVASYPGKLILVSIQ 306 (416)
Q Consensus 231 ~~~vLDIGCG-~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~---Da~~l~~~~~~~~~~s~D~v~~~ 306 (416)
+..||=.|+| .|..++.+|+.....+++++|....-++.+++.|...+--... +..+.+.+.. .+.+|.++=.
T Consensus 188 g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~v~~~~---~~~~d~vid~ 264 (369)
T cd08301 188 GSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKFGVTEFVNPKDHDKPVQEVIAEMT---GGGVDYSFEC 264 (369)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEcccccchhHHHHHHHHh---CCCCCEEEEC
Confidence 5667767764 2445566777764347999987655455555666542211111 1111112211 2357766432
Q ss_pred CCCCCCCCcchhhhhhhHHHHHHHHhhccCC-cEEEEE
Q 014919 307 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHD-GKVFLQ 343 (416)
Q Consensus 307 fpdpw~k~~h~krRl~~~~~l~~i~r~Lkpg-G~l~l~ 343 (416)
.- ....+....+.++++ |++.+.
T Consensus 265 -~G-------------~~~~~~~~~~~~~~~~g~~v~~ 288 (369)
T cd08301 265 -TG-------------NIDAMISAFECVHDGWGVTVLL 288 (369)
T ss_pred -CC-------------ChHHHHHHHHHhhcCCCEEEEE
Confidence 11 025567778889996 888764
No 409
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=36.55 E-value=2e+02 Score=27.98 Aligned_cols=90 Identities=19% Similarity=0.165 Sum_probs=49.5
Q ss_pred CeEEEEeccc-cH-HHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCC
Q 014919 232 PLVVDIGSGN-GL-FLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN 309 (416)
Q Consensus 232 ~~vLDIGCG~-G~-~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpd 309 (416)
.+|.=||||. |. ++..+++.....+++++|......+.+.+.+... . ...+..+. + ...|.|++.-|.
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~-~-~~~~~~~~----~----~~aDvViiavp~ 76 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGD-R-VTTSAAEA----V----KGADLVILCVPV 76 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCc-e-ecCCHHHH----h----cCCCEEEECCCH
Confidence 4577788876 32 2233333322247999998665555555544321 1 11222211 1 346888776443
Q ss_pred CCCCCcchhhhhhhHHHHHHHHhhccCCcEEEE
Q 014919 310 PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 342 (416)
Q Consensus 310 pw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l 342 (416)
+- ...+++.+...++++..+..
T Consensus 77 ~~-----------~~~v~~~l~~~l~~~~iv~d 98 (307)
T PRK07502 77 GA-----------SGAVAAEIAPHLKPGAIVTD 98 (307)
T ss_pred HH-----------HHHHHHHHHhhCCCCCEEEe
Confidence 21 13667778888899886654
No 410
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=36.49 E-value=3.8e+02 Score=27.42 Aligned_cols=60 Identities=12% Similarity=0.080 Sum_probs=33.9
Q ss_pred CceeEEEEECCCCCCCCc-chhhhhhhHHHHHHHHhhccCCcEEEEE-eCcHHHHHHHHHHHHh
Q 014919 298 GKLILVSIQCPNPDFNRP-EHRWRMVQRSLVEAVSDLLVHDGKVFLQ-SDIEEVMLRMKQQFLE 359 (416)
Q Consensus 298 ~s~D~v~~~fpdpw~k~~-h~krRl~~~~~l~~i~r~LkpgG~l~l~-tD~~~~~~~~~~~~~~ 359 (416)
...|.|++..|.|...+. .....-+ .+.++.+.+ +++|..+... |=.....+++.+.+.+
T Consensus 72 ~~ad~vii~Vpt~~~~k~~~~dl~~v-~~v~~~i~~-~~~g~lVV~~STv~pgtt~~l~~~~~~ 133 (388)
T PRK15057 72 RDADYVIIATPTDYDPKTNYFNTSSV-ESVIKDVVE-INPYAVMVIKSTVPVGFTAAMHKKYRT 133 (388)
T ss_pred cCCCEEEEeCCCCCccCCCCcChHHH-HHHHHHHHh-cCCCCEEEEeeecCCchHHHHHHHhhc
Confidence 346889888888853211 0000011 244566776 6887776654 4445566666666654
No 411
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=36.01 E-value=4.4e+02 Score=27.13 Aligned_cols=124 Identities=16% Similarity=0.179 Sum_probs=62.3
Q ss_pred eEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhh-------ccCCCceeEEEE
Q 014919 233 LVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIV-------ASYPGKLILVSI 305 (416)
Q Consensus 233 ~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~-------~~~~~s~D~v~~ 305 (416)
+|.=||.|.-....+.+-...+.+++|+|......+... .+. +.+...+..+++.+.. .......|.|++
T Consensus 5 kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~-~g~--~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii 81 (415)
T PRK11064 5 TISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTIN-RGE--IHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFLI 81 (415)
T ss_pred EEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHH-CCC--CCcCCCCHHHHHHHHhhcCceeeecccccCCEEEE
Confidence 455667765433333222223578999998665444432 221 1222222222211000 001124688988
Q ss_pred ECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeC-cHHHHHHHHHHHHhC
Q 014919 306 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD-IEEVMLRMKQQFLEY 360 (416)
Q Consensus 306 ~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD-~~~~~~~~~~~~~~~ 360 (416)
..|.|--.+....-+. ....++.+.+.|++|-.+++.|- .....+.+...+.+.
T Consensus 82 ~vptp~~~~~~~dl~~-v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~ 136 (415)
T PRK11064 82 AVPTPFKGDHEPDLTY-VEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAEA 136 (415)
T ss_pred EcCCCCCCCCCcChHH-HHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHh
Confidence 8888742221111011 13567888899999887776543 344556666555543
No 412
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=36.01 E-value=2e+02 Score=28.15 Aligned_cols=106 Identities=15% Similarity=0.119 Sum_probs=61.5
Q ss_pred CeEEEEeccc--cHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCC
Q 014919 232 PLVVDIGSGN--GLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN 309 (416)
Q Consensus 232 ~~vLDIGCG~--G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpd 309 (416)
.+|+=+|.|- |.++..+.++.+...++|.|.+....+.+...++. ....+.... . .....|+|++.-|-
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~---d~~~~~~~~-~-----~~~~aD~VivavPi 74 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVI---DELTVAGLA-E-----AAAEADLVIVAVPI 74 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcc---cccccchhh-h-----hcccCCEEEEeccH
Confidence 4566677653 55555666667777889999877666665544432 111111101 0 13457998887542
Q ss_pred CCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhC
Q 014919 310 PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEY 360 (416)
Q Consensus 310 pw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~ 360 (416)
. ...++++++...|++|..+. |.-..-....+.++++
T Consensus 75 ~-----------~~~~~l~~l~~~l~~g~iv~---Dv~S~K~~v~~a~~~~ 111 (279)
T COG0287 75 E-----------ATEEVLKELAPHLKKGAIVT---DVGSVKSSVVEAMEKY 111 (279)
T ss_pred H-----------HHHHHHHHhcccCCCCCEEE---ecccccHHHHHHHHHh
Confidence 2 23588999999999987664 4433333334444443
No 413
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=35.65 E-value=1.8e+02 Score=28.40 Aligned_cols=96 Identities=16% Similarity=0.093 Sum_probs=50.5
Q ss_pred CeEEEEeccc-cHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcE-EEEEcChhhhhhhhhccCCCceeEEEEECCC
Q 014919 232 PLVVDIGSGN-GLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNG-YFIATNATSTFRSIVASYPGKLILVSIQCPN 309 (416)
Q Consensus 232 ~~vLDIGCG~-G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv-~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpd 309 (416)
..+|=.|||. |..+..+|+.....++++++....-...+...+.+.+ .....+...-+.... ....+|.++-....
T Consensus 168 ~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~i~~~~--~~~~~d~vld~~g~ 245 (345)
T cd08286 168 DTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKKLGATHTVNSAKGDAIEQVLELT--DGRGVDVVIEAVGI 245 (345)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCceeccccccHHHHHHHHh--CCCCCCEEEECCCC
Confidence 3333367642 3345667777654678888865544444445555321 221122211111111 23458877532111
Q ss_pred CCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919 310 PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 343 (416)
Q Consensus 310 pw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~ 343 (416)
...++.+.+.|+++|++...
T Consensus 246 --------------~~~~~~~~~~l~~~g~~v~~ 265 (345)
T cd08286 246 --------------PATFELCQELVAPGGHIANV 265 (345)
T ss_pred --------------HHHHHHHHHhccCCcEEEEe
Confidence 14567788999999998753
No 414
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=35.50 E-value=3.7e+02 Score=28.38 Aligned_cols=124 Identities=12% Similarity=0.080 Sum_probs=62.9
Q ss_pred eEEEEeccccHHHHH--HHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhh------h----ccCCCce
Q 014919 233 LVVDIGSGNGLFLLG--MARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSI------V----ASYPGKL 300 (416)
Q Consensus 233 ~vLDIGCG~G~~~~~--lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~------~----~~~~~s~ 300 (416)
.|.=||+|....... ||++.++.+++|+|....-.+..++.+. .+..-+..+++.+. + ...-...
T Consensus 3 ~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~---~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~a 79 (473)
T PLN02353 3 KICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQL---PIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEA 79 (473)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCC---ccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcC
Confidence 355678877666544 4444446789999975544444322211 11111222221000 0 0001235
Q ss_pred eEEEEECCCCCCCCc---chhhhhh-hHHHHHHHHhhccCCcEEEEEeCc-HHHHHHHHHHHHh
Q 014919 301 ILVSIQCPNPDFNRP---EHRWRMV-QRSLVEAVSDLLVHDGKVFLQSDI-EEVMLRMKQQFLE 359 (416)
Q Consensus 301 D~v~~~fpdpw~k~~---h~krRl~-~~~~l~~i~r~LkpgG~l~l~tD~-~~~~~~~~~~~~~ 359 (416)
|.+++..|-|--.+. ++.-.+. -....+++.+.|++|-.++++|-. ....+.+...+.+
T Consensus 80 dvi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~ 143 (473)
T PLN02353 80 DIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTH 143 (473)
T ss_pred CEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHh
Confidence 778877777742211 1111111 247788899999988877776433 3344555555554
No 415
>PRK10458 DNA cytosine methylase; Provisional
Probab=34.86 E-value=4e+02 Score=28.14 Aligned_cols=132 Identities=13% Similarity=-0.005 Sum_probs=72.5
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhC--CCcEEEEEcChhhhhhh------------hhccC
Q 014919 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSG--ITNGYFIATNATSTFRS------------IVASY 296 (416)
Q Consensus 231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~--l~nv~f~~~Da~~l~~~------------~~~~~ 296 (416)
.-+++|+=||.|.+...+-+. ....+.++|+...|.+.-+.+- .++...+.+|+..+... .++..
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~a-G~~~v~a~Eid~~A~~TY~~N~~~~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~~~~~ 166 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAI-GGQCVFTSEWNKHAVRTYKANWYCDPATHRFNEDIRDITLSHKEGVSDEEAAEHIRQH 166 (467)
T ss_pred CceEEEeCcCccHHHHHHHHc-CCEEEEEEechHHHHHHHHHHcCCCCccceeccChhhCccccccccchhhhhhhhhcc
Confidence 568999999999999888655 2335678999887777654432 23445566777765210 00000
Q ss_pred CCceeEEEEECC-CCCCCCcchhh-------hh---hhHHHHHHHHh---hccCCcEEEEE-------eCcHHHHHHHHH
Q 014919 297 PGKLILVSIQCP-NPDFNRPEHRW-------RM---VQRSLVEAVSD---LLVHDGKVFLQ-------SDIEEVMLRMKQ 355 (416)
Q Consensus 297 ~~s~D~v~~~fp-dpw~k~~h~kr-------Rl---~~~~~l~~i~r---~LkpgG~l~l~-------tD~~~~~~~~~~ 355 (416)
...+|+++..|| .|+......|. .. .+..++.++.| .++|. .|++. .+....++.+++
T Consensus 167 ~p~~DvL~gGpPCQ~FS~AG~~k~~~~gr~~g~~~d~rg~Lf~~~~rii~~~kPk-~fvlENV~gl~s~~~g~~f~~i~~ 245 (467)
T PRK10458 167 IPDHDVLLAGFPCQPFSLAGVSKKNSLGRAHGFECETQGTLFFDVARIIDAKRPA-IFVLENVKNLKSHDKGKTFRIIMQ 245 (467)
T ss_pred CCCCCEEEEcCCCCccchhcccccccccccccccCCccccHHHHHHHHHHHhCCC-EEEEeCcHhhhcccccHHHHHHHH
Confidence 125788877664 23322221110 00 00112233333 34665 33332 233446777888
Q ss_pred HHHhCCCCc
Q 014919 356 QFLEYGKGK 364 (416)
Q Consensus 356 ~~~~~~~~~ 364 (416)
.|++.|+.+
T Consensus 246 ~L~~lGY~v 254 (467)
T PRK10458 246 TLDELGYDV 254 (467)
T ss_pred HHHHcCCeE
Confidence 888888764
No 416
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=34.80 E-value=79 Score=31.12 Aligned_cols=72 Identities=13% Similarity=0.238 Sum_probs=42.7
Q ss_pred EEEEEcChhhhhhhhhccCCCceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeC----------cH
Q 014919 278 GYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD----------IE 347 (416)
Q Consensus 278 v~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD----------~~ 347 (416)
|+|+-.|....+... +-..+-||.|++.+.- -| ++.+ ++.++++|+|.|++.|- ..
T Consensus 202 VhFLPld~~~~L~~K-~ky~~~Fd~ifvs~s~-----vh----~L~p----~l~~~~a~~A~LvvEtaKfmvdLrKEq~~ 267 (289)
T PF14740_consen 202 VHFLPLDSLEKLPHK-SKYQNFFDLIFVSCSM-----VH----FLKP----ELFQALAPDAVLVVETAKFMVDLRKEQLQ 267 (289)
T ss_pred EEEeCchHHHHHhhH-HhhcCCCCEEEEhhhh-----Hh----hcch----HHHHHhCCCCEEEEEcchhheeCCHHHHH
Confidence 666666655443221 1125679999876321 11 1122 47889999999999762 23
Q ss_pred HHHHHHHHHHHhCCCC
Q 014919 348 EVMLRMKQQFLEYGKG 363 (416)
Q Consensus 348 ~~~~~~~~~~~~~~~~ 363 (416)
.|...+.+++.+.|+.
T Consensus 268 ~F~~kv~eLA~~aG~~ 283 (289)
T PF14740_consen 268 EFVKKVKELAKAAGFK 283 (289)
T ss_pred HHHHHHHHHHHHCCCc
Confidence 4566666666676664
No 417
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=34.59 E-value=3e+02 Score=27.19 Aligned_cols=95 Identities=14% Similarity=0.129 Sum_probs=51.8
Q ss_pred CCeEEEEecc-ccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhh---hhhhhccCCCceeEEEEE
Q 014919 231 QPLVVDIGSG-NGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATST---FRSIVASYPGKLILVSIQ 306 (416)
Q Consensus 231 ~~~vLDIGCG-~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l---~~~~~~~~~~s~D~v~~~ 306 (416)
+..+|=.|+| .|..+..+|+...-..++.++....-.+.+.+.+.+. ++..+-..+ +.... ....+|.++-.
T Consensus 188 g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~~~g~~~--v~~~~~~~~~~~l~~~~--~~~~~d~vld~ 263 (367)
T cd08263 188 GETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKELGATH--TVNAAKEDAVAAIREIT--GGRGVDVVVEA 263 (367)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCce--EecCCcccHHHHHHHHh--CCCCCCEEEEe
Confidence 4455545765 5667777888765334888875444344444445432 222211111 11111 23568887643
Q ss_pred CCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919 307 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 343 (416)
Q Consensus 307 fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~ 343 (416)
... ...++...+.|+++|++...
T Consensus 264 vg~--------------~~~~~~~~~~l~~~G~~v~~ 286 (367)
T cd08263 264 LGK--------------PETFKLALDVVRDGGRAVVV 286 (367)
T ss_pred CCC--------------HHHHHHHHHHHhcCCEEEEE
Confidence 211 12567788999999998754
No 418
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=34.56 E-value=2.7e+02 Score=27.21 Aligned_cols=97 Identities=13% Similarity=0.062 Sum_probs=51.1
Q ss_pred CCeEEEEecc-ccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcE-EEEEcChhhhhhhhhccCCCceeEEEEECC
Q 014919 231 QPLVVDIGSG-NGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNG-YFIATNATSTFRSIVASYPGKLILVSIQCP 308 (416)
Q Consensus 231 ~~~vLDIGCG-~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv-~f~~~Da~~l~~~~~~~~~~s~D~v~~~fp 308 (416)
+..+|=.|+| .|..++.+|+...-..+++++....-.+.+.+.+.+.+ .....+..+-+.+.. ....+|.++-.-.
T Consensus 173 g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~l~~~~--~~~~~d~vid~~g 250 (351)
T cd08233 173 GDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEELGATIVLDPTEVDVVAEVRKLT--GGGGVDVSFDCAG 250 (351)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEECCCccCHHHHHHHHh--CCCCCCEEEECCC
Confidence 4556656753 35556667777533378888865444444444454321 111112111111111 2234888764311
Q ss_pred CCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919 309 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 343 (416)
Q Consensus 309 dpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~ 343 (416)
. ...++...+.|+++|++...
T Consensus 251 ~--------------~~~~~~~~~~l~~~G~~v~~ 271 (351)
T cd08233 251 V--------------QATLDTAIDALRPRGTAVNV 271 (351)
T ss_pred C--------------HHHHHHHHHhccCCCEEEEE
Confidence 1 14567788899999998764
No 419
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=34.51 E-value=54 Score=29.58 Aligned_cols=20 Identities=20% Similarity=0.305 Sum_probs=17.8
Q ss_pred HHHHHHHhhccCCcEEEEEe
Q 014919 325 SLVEAVSDLLVHDGKVFLQS 344 (416)
Q Consensus 325 ~~l~~i~r~LkpgG~l~l~t 344 (416)
+.+.++.++|||||.|++..
T Consensus 92 ~~m~~i~~vLK~GG~L~l~v 111 (177)
T PF03269_consen 92 RAMAKIKCVLKPGGLLFLGV 111 (177)
T ss_pred HHHHHHHHhhccCCeEEEEe
Confidence 66889999999999999974
No 420
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=34.04 E-value=2.2e+02 Score=28.83 Aligned_cols=101 Identities=17% Similarity=-0.023 Sum_probs=51.0
Q ss_pred CCeEEEEecc-ccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCC
Q 014919 231 QPLVVDIGSG-NGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN 309 (416)
Q Consensus 231 ~~~vLDIGCG-~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpd 309 (416)
...++=||+| .|..+...++.. +++++.+|......+.+.......+.....+..++ .+.+ ...|.|+.. -
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~l-Ga~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l-~~~l----~~aDvVI~a--~ 238 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGL-GATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEI-EDAV----KRADLLIGA--V 238 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHC-CCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHH-HHHH----ccCCEEEEc--c
Confidence 4558888888 456666666665 45899999754433433322212232222222333 2222 356877643 2
Q ss_pred CCCCCcchhhhhhhHHHHHHHHhhccCCcEEEE-EeC
Q 014919 310 PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL-QSD 345 (416)
Q Consensus 310 pw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l-~tD 345 (416)
+|+..+.. .++..+. .+.++|++.++- ..|
T Consensus 239 ~~~g~~~p--~lit~~~----l~~mk~g~vIvDva~d 269 (370)
T TIGR00518 239 LIPGAKAP--KLVSNSL----VAQMKPGAVIVDVAID 269 (370)
T ss_pred ccCCCCCC--cCcCHHH----HhcCCCCCEEEEEecC
Confidence 33222221 2333333 355788887663 344
No 421
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=33.51 E-value=3.3e+02 Score=24.17 Aligned_cols=90 Identities=11% Similarity=0.106 Sum_probs=50.2
Q ss_pred CCCeEEEEeccc-cHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECC
Q 014919 230 AQPLVVDIGSGN-GLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP 308 (416)
Q Consensus 230 ~~~~vLDIGCG~-G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fp 308 (416)
.+.+|.=||+|. |.....+++.+ +.+++++|............+ + ...+..+++ ...|.|+++.|
T Consensus 35 ~g~tvgIiG~G~IG~~vA~~l~~f-G~~V~~~d~~~~~~~~~~~~~---~--~~~~l~ell--------~~aDiv~~~~p 100 (178)
T PF02826_consen 35 RGKTVGIIGYGRIGRAVARRLKAF-GMRVIGYDRSPKPEEGADEFG---V--EYVSLDELL--------AQADIVSLHLP 100 (178)
T ss_dssp TTSEEEEESTSHHHHHHHHHHHHT-T-EEEEEESSCHHHHHHHHTT---E--EESSHHHHH--------HH-SEEEE-SS
T ss_pred CCCEEEEEEEcCCcCeEeeeeecC-CceeEEecccCChhhhccccc---c--eeeehhhhc--------chhhhhhhhhc
Confidence 468899999864 44455555555 679999996443332222222 2 334555542 25799999876
Q ss_pred CCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEE
Q 014919 309 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 342 (416)
Q Consensus 309 dpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l 342 (416)
.- +.. +.+++.++|+ .||+|..|+=
T Consensus 101 lt--~~T---~~li~~~~l~----~mk~ga~lvN 125 (178)
T PF02826_consen 101 LT--PET---RGLINAEFLA----KMKPGAVLVN 125 (178)
T ss_dssp SS--TTT---TTSBSHHHHH----TSTTTEEEEE
T ss_pred cc--ccc---ceeeeeeeee----ccccceEEEe
Confidence 32 111 2356656554 7888776654
No 422
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=33.25 E-value=1.8e+02 Score=26.31 Aligned_cols=62 Identities=18% Similarity=0.155 Sum_probs=33.4
Q ss_pred ceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeC-cHHHHH-HHHHHHHhCC
Q 014919 299 KLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD-IEEVML-RMKQQFLEYG 361 (416)
Q Consensus 299 s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD-~~~~~~-~~~~~~~~~~ 361 (416)
..|.+++..|.|...+...--+.+ ...++.+.+.|+++-.+.+.+- .....+ .....+++.+
T Consensus 76 ~adv~~I~VpTP~~~~~~~Dls~v-~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~ 139 (185)
T PF03721_consen 76 DADVVFICVPTPSDEDGSPDLSYV-ESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRS 139 (185)
T ss_dssp H-SEEEE----EBETTTSBETHHH-HHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHC
T ss_pred ccceEEEecCCCccccCCccHHHH-HHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhc
Confidence 468888877777533222111111 4778999999999888888643 233444 3445566544
No 423
>PF08468 MTS_N: Methyltransferase small domain N-terminal; InterPro: IPR013675 This domain is found to the N terminus of the methyltransferase small domain (IPR007848 from INTERPRO) in bacterial proteins []. ; GO: 0008990 rRNA (guanine-N2-)-methyltransferase activity, 0006364 rRNA processing; PDB: 2PJD_A.
Probab=32.89 E-value=56 Score=28.98 Aligned_cols=109 Identities=10% Similarity=0.018 Sum_probs=55.3
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEchH-HHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCC
Q 014919 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELV-THCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN 309 (416)
Q Consensus 231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~-~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpd 309 (416)
+..||=+|.=.-.+...|.+.. ..+...... ..+... ....|+.+..+-. . + ....+|.+.++
T Consensus 13 ~k~vL~~g~~~D~~~~~L~~~~--~~v~~~~~~~~~~~~~---~~~~~~~~~f~~~--~-~-----~~~~~D~vvly--- 76 (155)
T PF08468_consen 13 GKSVLFAGDPQDDLPAQLPAIA--VSVHVFSYHHWYALQK---QAQSNVQFHFGAE--L-P-----ADQDFDTVVLY--- 76 (155)
T ss_dssp T-EEEEEE---SSHHHHS--SE--EEEEESBHHHHHHHHH---HHGGGEEE-SS----H-H-----HHTT-SEEEEE---
T ss_pred CCeEEEEcCCchhhHHHhhhcC--CEEEEEEchHHHHHhH---hcccCceEeeecc--C-C-----cccCCCEEEEE---
Confidence 4667777776667777766442 233333321 111111 1124666653321 1 1 13569999988
Q ss_pred CCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCC
Q 014919 310 PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYG 361 (416)
Q Consensus 310 pw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~ 361 (416)
|||.+.. -.-.|..+...|++||.+++.-++..=.+....+++..+
T Consensus 77 -~PKaK~e-----~~~lL~~l~~~L~~g~~i~vVGEnk~GIkSa~K~L~~~~ 122 (155)
T PF08468_consen 77 -WPKAKAE-----AQYLLANLLSHLPPGTEIFVVGENKGGIKSAEKQLAPYG 122 (155)
T ss_dssp ---SSHHH-----HHHHHHHHHTTS-TT-EEEEEEEGGGTGGGHHHHHTTTS
T ss_pred -ccCcHHH-----HHHHHHHHHHhCCCCCEEEEEecCcccHHHHHHHHHhhC
Confidence 4454432 235688899999999999999887765555566666653
No 424
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=32.48 E-value=90 Score=32.86 Aligned_cols=86 Identities=16% Similarity=0.171 Sum_probs=53.9
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchH-----------HHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCC
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELV-----------THCRDSLQLSGITNGYFIATNATSTFRSIVASYPG 298 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~-----------~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~ 298 (416)
.+.+|+=||||+ .+...|. +.+..|++++ ....+++.+.|.+ ..+..+. + .
T Consensus 35 kgKtIaIIGyGS--qG~AqAl---NLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF~-----v~~~~Ea----~----~ 96 (487)
T PRK05225 35 KGKKIVIVGCGA--QGLNQGL---NMRDSGLDISYALRKEAIAEKRASWRKATENGFK-----VGTYEEL----I----P 96 (487)
T ss_pred CCCEEEEEccCH--HHHHHhC---CCccccceeEEeccccccccccchHHHHHhcCCc-----cCCHHHH----H----H
Confidence 368899999976 3333333 3444455532 3455556555552 2343333 2 3
Q ss_pred ceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919 299 KLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 344 (416)
Q Consensus 299 s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t 344 (416)
..|.|.+.-||- .| ..+.+++...||||..|.++.
T Consensus 97 ~ADvVviLlPDt----~q-------~~v~~~i~p~LK~Ga~L~fsH 131 (487)
T PRK05225 97 QADLVINLTPDK----QH-------SDVVRAVQPLMKQGAALGYSH 131 (487)
T ss_pred hCCEEEEcCChH----HH-------HHHHHHHHhhCCCCCEEEecC
Confidence 578898887765 12 355689999999999999964
No 425
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=32.24 E-value=1.2e+02 Score=27.27 Aligned_cols=91 Identities=15% Similarity=0.216 Sum_probs=48.9
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEE-EEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCC
Q 014919 231 QPLVVDIGSGNGLFLLGMARKRKDLNFL-GLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN 309 (416)
Q Consensus 231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~i-GvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpd 309 (416)
+.+|.=||+|+=.....+--+-...+++ |.---....+++++.|++ ..+..+.. ..-|.|.+..||
T Consensus 4 ~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~-----v~~~~eAv--------~~aDvV~~L~PD 70 (165)
T PF07991_consen 4 GKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADGFE-----VMSVAEAV--------KKADVVMLLLPD 70 (165)
T ss_dssp TSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-E-----CCEHHHHH--------HC-SEEEE-S-H
T ss_pred CCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCe-----eccHHHHH--------hhCCEEEEeCCh
Confidence 5678889997543333333333344554 333222356667777753 23433331 246889888776
Q ss_pred CCCCCcchhhhhhhHHHH-HHHHhhccCCcEEEEEeC
Q 014919 310 PDFNRPEHRWRMVQRSLV-EAVSDLLVHDGKVFLQSD 345 (416)
Q Consensus 310 pw~k~~h~krRl~~~~~l-~~i~r~LkpgG~l~l~tD 345 (416)
. .+++.. +++...|+||-.|.|..-
T Consensus 71 ~-----------~q~~vy~~~I~p~l~~G~~L~fahG 96 (165)
T PF07991_consen 71 E-----------VQPEVYEEEIAPNLKPGATLVFAHG 96 (165)
T ss_dssp H-----------HHHHHHHHHHHHHS-TT-EEEESSS
T ss_pred H-----------HHHHHHHHHHHhhCCCCCEEEeCCc
Confidence 5 344555 889999999999999643
No 426
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=32.14 E-value=3.7e+02 Score=25.15 Aligned_cols=95 Identities=13% Similarity=0.092 Sum_probs=51.5
Q ss_pred CCeEEEEec--cccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEE-EEcChhhhhhhhhccCCCceeEEEEEC
Q 014919 231 QPLVVDIGS--GNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYF-IATNATSTFRSIVASYPGKLILVSIQC 307 (416)
Q Consensus 231 ~~~vLDIGC--G~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f-~~~Da~~l~~~~~~~~~~s~D~v~~~f 307 (416)
+..+|-.|| +.|..+..+|+.. ++.++.++....-.+.+...+..++.- ...+....+.... ....+|.++-..
T Consensus 140 ~~~vli~g~~~~~g~~~~~~a~~~-g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~--~~~~~d~v~~~~ 216 (323)
T cd08241 140 GETVLVLGAAGGVGLAAVQLAKAL-GARVIAAASSEEKLALARALGADHVIDYRDPDLRERVKALT--GGRGVDVVYDPV 216 (323)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHh-CCEEEEEeCCHHHHHHHHHcCCceeeecCCccHHHHHHHHc--CCCCcEEEEECc
Confidence 578888998 4666777777764 567888875443334444444432111 1112211111111 234588765321
Q ss_pred CCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919 308 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 343 (416)
Q Consensus 308 pdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~ 343 (416)
. ...+....+.++++|.+...
T Consensus 217 g---------------~~~~~~~~~~~~~~g~~v~~ 237 (323)
T cd08241 217 G---------------GDVFEASLRSLAWGGRLLVI 237 (323)
T ss_pred c---------------HHHHHHHHHhhccCCEEEEE
Confidence 1 13456677888999987653
No 427
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=31.95 E-value=2.6e+02 Score=29.63 Aligned_cols=110 Identities=18% Similarity=0.196 Sum_probs=59.3
Q ss_pred CCeEEEEeccccHHHHHHHHhC----CCCeEEEEchHH----HHHHHHHHhCC--CcEEEEEcChhhhhhhhhccCCCce
Q 014919 231 QPLVVDIGSGNGLFLLGMARKR----KDLNFLGLELVT----HCRDSLQLSGI--TNGYFIATNATSTFRSIVASYPGKL 300 (416)
Q Consensus 231 ~~~vLDIGCG~G~~~~~lA~~~----p~~~~iGvD~~~----~a~~~a~~~~l--~nv~f~~~Da~~l~~~~~~~~~~s~ 300 (416)
...+.|.-||+|.++....+.. ....++|-|... .+.....-++. ++.....+|...- +.+. ....+
T Consensus 218 ~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~~dtl~~-~d~~--~~~~~ 294 (501)
T TIGR00497 218 VDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIINADTLTT-KEWE--NENGF 294 (501)
T ss_pred CCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcccCCcCCC-cccc--ccccC
Confidence 4579999999999998765432 124688988532 23332222332 2233334443221 1111 23468
Q ss_pred eEEEEECCC--CCCCC--c---chhhh----------hhhHHHHHHHHhhccCCcEEEEE
Q 014919 301 ILVSIQCPN--PDFNR--P---EHRWR----------MVQRSLVEAVSDLLVHDGKVFLQ 343 (416)
Q Consensus 301 D~v~~~fpd--pw~k~--~---h~krR----------l~~~~~l~~i~r~LkpgG~l~l~ 343 (416)
|.+..|-|. .|... + ...+. -....|+.....+|++||+..+.
T Consensus 295 D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI 354 (501)
T TIGR00497 295 EVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIV 354 (501)
T ss_pred CEEeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEE
Confidence 888877432 13211 0 00000 01347889999999999975543
No 428
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=31.88 E-value=1.3e+02 Score=31.15 Aligned_cols=40 Identities=25% Similarity=0.395 Sum_probs=27.7
Q ss_pred CCcEEEEEcCC-ccchHHHHHHHHHHhcCeEEEehHHHHHH
Q 014919 6 EKPYAAIIGGG-NLCNKAAALHFLASRCDGLIFVGLMSFQI 45 (416)
Q Consensus 6 ~~p~~~i~GGa-Kv~dki~~~~~l~~~~d~~~~gG~~a~~f 45 (416)
.+|.++|+||. |-.|-=.+++.+.+.+|.+++.|--+..+
T Consensus 342 ~~~~i~IlGg~~~~~~~~~~~~~l~~~~~~vil~G~~~~~l 382 (445)
T PRK04308 342 QNPLFVILGGMGKGQDFTPLRDALAGKAKGVFLIGVDAPQI 382 (445)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHhCcEEEEECCCHHHH
Confidence 35789999977 65565555555556689998888654444
No 429
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=31.74 E-value=1.8e+02 Score=27.62 Aligned_cols=74 Identities=14% Similarity=0.058 Sum_probs=45.2
Q ss_pred CCCeEEEEeccccHHHHHHHHhC--CCCeEEEEch-HHHHHHHHHHhCCCcEEEEEcChhh---h---hhhhhccCCCce
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKR--KDLNFLGLEL-VTHCRDSLQLSGITNGYFIATNATS---T---FRSIVASYPGKL 300 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~--p~~~~iGvD~-~~~a~~~a~~~~l~nv~f~~~Da~~---l---~~~~~~~~~~s~ 300 (416)
..+.||=.||-.|.+.-+||+.+ .++.+++.-. .+.+.+.+.+.|+. ....|+.. . ..+...++++++
T Consensus 6 ~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~~~~gl~---~~kLDV~~~~~V~~v~~evr~~~~Gkl 82 (289)
T KOG1209|consen 6 QPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAIQFGLK---PYKLDVSKPEEVVTVSGEVRANPDGKL 82 (289)
T ss_pred CCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHHHhhCCe---eEEeccCChHHHHHHHHHHhhCCCCce
Confidence 46889999999999999999875 3678888753 22333333344543 33334332 1 122223357889
Q ss_pred eEEEEE
Q 014919 301 ILVSIQ 306 (416)
Q Consensus 301 D~v~~~ 306 (416)
|+++=|
T Consensus 83 d~L~NN 88 (289)
T KOG1209|consen 83 DLLYNN 88 (289)
T ss_pred EEEEcC
Confidence 987643
No 430
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=31.72 E-value=2.6e+02 Score=27.10 Aligned_cols=97 Identities=13% Similarity=0.110 Sum_probs=50.9
Q ss_pred CCeEEEEecc-ccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCC
Q 014919 231 QPLVVDIGSG-NGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN 309 (416)
Q Consensus 231 ~~~vLDIGCG-~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpd 309 (416)
+..+|=.|+| .|..+..+|+.....++++++.+..-.+.+++.+.+.+--.+.+...-+.... ....+|.++-.-..
T Consensus 168 ~~~vlI~g~~~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~--~~~~~dvvld~~g~ 245 (340)
T cd05284 168 GSTVVVIGVGGLGHIAVQILRALTPATVIAVDRSEEALKLAERLGADHVLNASDDVVEEVRELT--GGRGADAVIDFVGS 245 (340)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHhCCcEEEcCCccHHHHHHHHh--CCCCCCEEEEcCCC
Confidence 4555556643 34445566776544778888754443444444554322111111111111111 23458877643111
Q ss_pred CCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919 310 PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 343 (416)
Q Consensus 310 pw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~ 343 (416)
...++...+.|+++|++...
T Consensus 246 --------------~~~~~~~~~~l~~~g~~i~~ 265 (340)
T cd05284 246 --------------DETLALAAKLLAKGGRYVIV 265 (340)
T ss_pred --------------HHHHHHHHHHhhcCCEEEEE
Confidence 25577888999999998754
No 431
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=31.50 E-value=3e+02 Score=26.46 Aligned_cols=107 Identities=9% Similarity=0.045 Sum_probs=59.7
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEchH---HHHHHHHHHhC---CCcEEEEEcChhhhhhhhhc---cCCCcee
Q 014919 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELV---THCRDSLQLSG---ITNGYFIATNATSTFRSIVA---SYPGKLI 301 (416)
Q Consensus 231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~---~~a~~~a~~~~---l~nv~f~~~Da~~l~~~~~~---~~~~s~D 301 (416)
...|+.+|||-=.-...+... ++.+++=+|.- +.-.+...+.+ ..|.+++.+|+..-+.+.+. +.+..--
T Consensus 82 ~~qvV~LGaGlDTr~~Rl~~~-~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~pt 160 (260)
T TIGR00027 82 IRQVVILGAGLDTRAYRLPWP-DGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTAPT 160 (260)
T ss_pred CcEEEEeCCccccHHHhcCCC-CCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCCCe
Confidence 457999999987777666422 25889988852 21122233322 35799999998632222221 0111111
Q ss_pred EEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919 302 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 344 (416)
Q Consensus 302 ~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t 344 (416)
.+++-..-++..... ...+|+.+.+...||+.+.+..
T Consensus 161 l~i~EGvl~YL~~~~------v~~ll~~i~~~~~~gs~l~~d~ 197 (260)
T TIGR00027 161 AWLWEGLLMYLTEEA------VDALLAFIAELSAPGSRLAFDY 197 (260)
T ss_pred eeeecchhhcCCHHH------HHHHHHHHHHhCCCCcEEEEEe
Confidence 222222222222111 2478889988888999999864
No 432
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=31.41 E-value=4.2e+02 Score=25.96 Aligned_cols=96 Identities=18% Similarity=0.097 Sum_probs=51.2
Q ss_pred CCeEEEEecc-ccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEc-Chh----hhhhhhhccCCCceeEEE
Q 014919 231 QPLVVDIGSG-NGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIAT-NAT----STFRSIVASYPGKLILVS 304 (416)
Q Consensus 231 ~~~vLDIGCG-~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~-Da~----~l~~~~~~~~~~s~D~v~ 304 (416)
+..+|=.|+| .|..+..+|+...-.++++++....-.+.+++.+.+.+.-... +.. .+ .+.. ....+|.++
T Consensus 178 g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i-~~~~--~~~~~d~vi 254 (361)
T cd08231 178 GDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELAREFGADATIDIDELPDPQRRAIV-RDIT--GGRGADVVI 254 (361)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCCeEEcCcccccHHHHHHH-HHHh--CCCCCcEEE
Confidence 4455556764 2444566777653328999986554444445556543221111 111 11 1111 234588775
Q ss_pred EECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919 305 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 343 (416)
Q Consensus 305 ~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~ 343 (416)
-. ... ...+....+.|+++|++++.
T Consensus 255 d~-~g~-------------~~~~~~~~~~l~~~G~~v~~ 279 (361)
T cd08231 255 EA-SGH-------------PAAVPEGLELLRRGGTYVLV 279 (361)
T ss_pred EC-CCC-------------hHHHHHHHHHhccCCEEEEE
Confidence 32 110 14567778999999998864
No 433
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=30.81 E-value=4.8e+02 Score=25.11 Aligned_cols=103 Identities=13% Similarity=0.019 Sum_probs=57.5
Q ss_pred cccHHHHHHHHhC--CCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCCCCCCCcch
Q 014919 240 GNGLFLLGMARKR--KDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEH 317 (416)
Q Consensus 240 G~G~~~~~lA~~~--p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdpw~k~~h~ 317 (416)
|.|.....||+.. .+.++++.|......+.+.+.+. . ...+..+. -...|.|++..|++..
T Consensus 3 GlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~g~---~-~~~s~~~~--------~~~advVil~vp~~~~----- 65 (288)
T TIGR01692 3 GLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGA---Q-AAASPAEA--------AEGADRVITMLPAGQH----- 65 (288)
T ss_pred cccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHcCC---e-ecCCHHHH--------HhcCCEEEEeCCChHH-----
Confidence 4566666666542 35688999976655555544442 1 12233222 1245888887665420
Q ss_pred hhhhhhHHHH---HHHHhhccCCcEEEE-EeCcHHHHHHHHHHHHhCCCCc
Q 014919 318 RWRMVQRSLV---EAVSDLLVHDGKVFL-QSDIEEVMLRMKQQFLEYGKGK 364 (416)
Q Consensus 318 krRl~~~~~l---~~i~r~LkpgG~l~l-~tD~~~~~~~~~~~~~~~~~~~ 364 (416)
+ +..+ +.+...+++|-.++- .|-.....+.+.+.+.+.+...
T Consensus 66 ----~-~~v~~g~~~l~~~~~~g~~vid~st~~p~~~~~~~~~~~~~g~~~ 111 (288)
T TIGR01692 66 ----V-ISVYSGDEGILPKVAKGSLLIDCSTIDPDSARKLAELAAAHGAVF 111 (288)
T ss_pred ----H-HHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcE
Confidence 1 2333 455666777655443 3445666777777777777653
No 434
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=30.72 E-value=5.5e+02 Score=26.07 Aligned_cols=95 Identities=12% Similarity=0.111 Sum_probs=62.3
Q ss_pred CCCeEEEEeccc-cHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEc----ChhhhhhhhhccCCCceeEEE
Q 014919 230 AQPLVVDIGSGN-GLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIAT----NATSTFRSIVASYPGKLILVS 304 (416)
Q Consensus 230 ~~~~vLDIGCG~-G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~----Da~~l~~~~~~~~~~s~D~v~ 304 (416)
.+..+.=+|||. |...+.-|+......++++|+...-++.+++.|.. +++.. |+.+.+.+. .++-.|..+
T Consensus 185 ~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fGAT--~~vn~~~~~~vv~~i~~~---T~gG~d~~~ 259 (366)
T COG1062 185 PGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGAT--HFVNPKEVDDVVEAIVEL---TDGGADYAF 259 (366)
T ss_pred CCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcCCc--eeecchhhhhHHHHHHHh---cCCCCCEEE
Confidence 367899999974 77777778888888999999988878888777764 22222 333332222 244566653
Q ss_pred EECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919 305 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 343 (416)
Q Consensus 305 ~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~ 343 (416)
---- +...++.....+.++|...+.
T Consensus 260 e~~G--------------~~~~~~~al~~~~~~G~~v~i 284 (366)
T COG1062 260 ECVG--------------NVEVMRQALEATHRGGTSVII 284 (366)
T ss_pred EccC--------------CHHHHHHHHHHHhcCCeEEEE
Confidence 2200 125667777788888987774
No 435
>PRK00299 sulfur transfer protein SirA; Reviewed
Probab=30.13 E-value=88 Score=24.36 Aligned_cols=56 Identities=13% Similarity=0.154 Sum_probs=41.7
Q ss_pred CCceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCCce
Q 014919 297 PGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKL 365 (416)
Q Consensus 297 ~~s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~~~ 365 (416)
+..+|.-=..+|-|. -.+++..+.|++|+.|.+.+|++...+.+....++.|+...
T Consensus 9 ~~~lD~~Gl~CP~Pl-------------l~~kk~l~~l~~G~~l~V~~dd~~~~~di~~~~~~~G~~~~ 64 (81)
T PRK00299 9 DHTLDALGLRCPEPV-------------MMVRKTVRNMQPGETLLIIADDPATTRDIPSFCRFMDHELL 64 (81)
T ss_pred CeEEecCCCCCCHHH-------------HHHHHHHHcCCCCCEEEEEeCCccHHHHHHHHHHHcCCEEE
Confidence 445676666677774 23566777889999999999988887877777788887643
No 436
>PRK09548 PTS system ascorbate-specific transporter subunits IICB; Provisional
Probab=29.89 E-value=2.8e+02 Score=30.19 Aligned_cols=55 Identities=11% Similarity=0.035 Sum_probs=38.0
Q ss_pred CeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEE
Q 014919 232 PLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 306 (416)
Q Consensus 232 ~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~ 306 (416)
.+|| +-||+|--+..+++. +..+.++++|++ +...++|+.+. +.....+|.+...
T Consensus 507 mKIL-vaCGsGiGTStmva~-------------kIkk~Lke~GI~-veV~~~~Vsev-----~s~~~~aDIIVtt 561 (602)
T PRK09548 507 VRIL-AVCGQGQGSSMMMKM-------------KIKKYLDKRGIP-IIMDSCAVNDY-----KGKLETIDIIVCS 561 (602)
T ss_pred cEEE-EECCCCchHHHHHHH-------------HHHHHHHHcCCC-eEEEEechHhC-----cccCCCCCEEEEc
Confidence 4455 889999888887764 233445678885 78889999886 2234568987664
No 437
>PF05968 Bacillus_PapR: Bacillus PapR protein; InterPro: IPR009239 This family consists of the Bacillus species-specific PapR protein. The papR gene belongs to the PlcR regulon and is located 70 bp downstream from plcR. It encodes a 48-amino-acid peptide. Disruption of the papR gene abolishes expression of the PlcR regulon, resulting in a large decrease in haemolysis and virulence in insect larvae. A processed form of PapR activates the PlcR regulon by allowing PlcR to bind to its DNA target. This activating mechanism is strain specific [].
Probab=29.45 E-value=18 Score=25.14 Aligned_cols=40 Identities=20% Similarity=0.347 Sum_probs=28.4
Q ss_pred eEEEehHHHHHHHHHcCCCCCCcccccCc-hHHHHHHHHHHhh
Q 014919 34 GLIFVGLMSFQIMHALGLPVPPELVEKGA-NDAASDLIQFARD 75 (416)
Q Consensus 34 ~~~~gG~~a~~fl~a~g~~ig~s~~e~~~-~~~a~~~~~~~~~ 75 (416)
++++|+.++...+ -|+..|+--+|++. +...++-++.|.+
T Consensus 3 kll~~slltlam~--~gislgdtalek~qvis~~~qevQlA~D 43 (48)
T PF05968_consen 3 KLLIGSLLTLAMA--WGISLGDTALEKDQVISHQDQEVQLASD 43 (48)
T ss_pred hHHHhHHHHHHHH--hhhhhhhhhhhhhhhhccchHHHHHhhc
Confidence 5788999887765 48888987777765 4556666666644
No 438
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=29.15 E-value=4.7e+02 Score=25.11 Aligned_cols=96 Identities=15% Similarity=0.158 Sum_probs=53.8
Q ss_pred CCeEEEEec--cccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECC
Q 014919 231 QPLVVDIGS--GNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP 308 (416)
Q Consensus 231 ~~~vLDIGC--G~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fp 308 (416)
+..+|=.|+ +.|..++.+|+..-+.+++++.-...-.+.+.+.+.+.+--...+....+.. . ..+.+|.++-...
T Consensus 149 g~~vlV~ga~g~vg~~~~~~ak~~~G~~vi~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~i~~-~--~~~~vd~vl~~~~ 225 (336)
T TIGR02817 149 KRALLIIGGAGGVGSILIQLARQLTGLTVIATASRPESQEWVLELGAHHVIDHSKPLKAQLEK-L--GLEAVSYVFSLTH 225 (336)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHHHHcCCCEEEECCCCHHHHHHH-h--cCCCCCEEEEcCC
Confidence 456666664 6777888888874367888887544334444445554321101122111121 1 2345887753211
Q ss_pred CCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919 309 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 343 (416)
Q Consensus 309 dpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~ 343 (416)
. ...+....++|+++|++...
T Consensus 226 ~--------------~~~~~~~~~~l~~~G~~v~~ 246 (336)
T TIGR02817 226 T--------------DQHFKEIVELLAPQGRFALI 246 (336)
T ss_pred c--------------HHHHHHHHHHhccCCEEEEE
Confidence 1 25567888899999988764
No 439
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=29.06 E-value=4.8e+02 Score=25.15 Aligned_cols=95 Identities=11% Similarity=0.112 Sum_probs=53.0
Q ss_pred CCeEEEEecc-ccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEE--cChhhhhhhhhccCCCceeEEEEEC
Q 014919 231 QPLVVDIGSG-NGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIA--TNATSTFRSIVASYPGKLILVSIQC 307 (416)
Q Consensus 231 ~~~vLDIGCG-~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~--~Da~~l~~~~~~~~~~s~D~v~~~f 307 (416)
+..+|=.||| .|..++.+|+...+.++++++-+..-++.+++.+.+.+--.. .+....+... .+.+|.++...
T Consensus 163 g~~vlV~g~g~vG~~~~~la~~~~g~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~v~~~----~~~~d~vi~~~ 238 (338)
T PRK09422 163 GQWIAIYGAGGLGNLALQYAKNVFNAKVIAVDINDDKLALAKEVGADLTINSKRVEDVAKIIQEK----TGGAHAAVVTA 238 (338)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHcCCcEEecccccccHHHHHHHh----cCCCcEEEEeC
Confidence 4566666764 466677777764467889988655555555555653321111 1111111111 12467554432
Q ss_pred CCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919 308 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 343 (416)
Q Consensus 308 pdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~ 343 (416)
. ....++...+.|+++|++...
T Consensus 239 ~--------------~~~~~~~~~~~l~~~G~~v~~ 260 (338)
T PRK09422 239 V--------------AKAAFNQAVDAVRAGGRVVAV 260 (338)
T ss_pred C--------------CHHHHHHHHHhccCCCEEEEE
Confidence 1 125678889999999998753
No 440
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=28.36 E-value=3.7e+02 Score=26.06 Aligned_cols=93 Identities=16% Similarity=0.137 Sum_probs=50.0
Q ss_pred CeEEEEecc-ccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhh---hhhhhccCCCceeEEEEEC
Q 014919 232 PLVVDIGSG-NGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATST---FRSIVASYPGKLILVSIQC 307 (416)
Q Consensus 232 ~~vLDIGCG-~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l---~~~~~~~~~~s~D~v~~~f 307 (416)
..++ .||| .|..+..+|+...-..+++++......+.++..+.+. ++..+-..+ +.... ....+|.++-..
T Consensus 171 ~vlI-~g~g~vg~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~ga~~--v~~~~~~~~~~~i~~~~--~~~~~d~il~~~ 245 (345)
T cd08287 171 TVVV-VGDGAVGLCAVLAAKRLGAERIIAMSRHEDRQALAREFGATD--IVAERGEEAVARVRELT--GGVGADAVLECV 245 (345)
T ss_pred EEEE-ECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCce--EecCCcccHHHHHHHhc--CCCCCCEEEECC
Confidence 4444 7875 3555677787764445899986543344444555432 222211111 11111 233577765321
Q ss_pred CCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919 308 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 343 (416)
Q Consensus 308 pdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~ 343 (416)
.. +..+....+.|+++|++...
T Consensus 246 g~--------------~~~~~~~~~~l~~~g~~v~~ 267 (345)
T cd08287 246 GT--------------QESMEQAIAIARPGGRVGYV 267 (345)
T ss_pred CC--------------HHHHHHHHHhhccCCEEEEe
Confidence 11 25677888899999988764
No 441
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=28.15 E-value=5.7e+02 Score=25.52 Aligned_cols=98 Identities=13% Similarity=0.158 Sum_probs=51.7
Q ss_pred CCeEEEEeccc-cHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEc----ChhhhhhhhhccCCCceeEEEE
Q 014919 231 QPLVVDIGSGN-GLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIAT----NATSTFRSIVASYPGKLILVSI 305 (416)
Q Consensus 231 ~~~vLDIGCG~-G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~----Da~~l~~~~~~~~~~s~D~v~~ 305 (416)
+..||=.|||. |..++.+|+.....++++++....-.+.+++.+.+.+--.+. +...-+.+.. ....+|.|+-
T Consensus 204 g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~v~~~~--~g~gvDvvld 281 (384)
T cd08265 204 GAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNLAKEMGADYVFNPTKMRDCLSGEKVMEVT--KGWGADIQVE 281 (384)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEEcccccccccHHHHHHHhc--CCCCCCEEEE
Confidence 34555457643 334455667664337999986554444455566543211111 1111112222 2345887754
Q ss_pred ECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919 306 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 343 (416)
Q Consensus 306 ~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~ 343 (416)
....+ ...+....+.|+++|++...
T Consensus 282 ~~g~~-------------~~~~~~~~~~l~~~G~~v~~ 306 (384)
T cd08265 282 AAGAP-------------PATIPQMEKSIAINGKIVYI 306 (384)
T ss_pred CCCCc-------------HHHHHHHHHHHHcCCEEEEE
Confidence 32111 14577888899999998864
No 442
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=28.05 E-value=4.2e+02 Score=27.07 Aligned_cols=55 Identities=18% Similarity=0.135 Sum_probs=29.4
Q ss_pred ceeEEEEECCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe-CcHHHHHHHH
Q 014919 299 KLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS-DIEEVMLRMK 354 (416)
Q Consensus 299 s~D~v~~~fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t-D~~~~~~~~~ 354 (416)
..|.|++..|+|-......--+.+ ...++.+.+.|++|-.+...+ -.....+.+.
T Consensus 76 ~advvii~vpt~~~~~~~~d~~~v-~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~ 131 (411)
T TIGR03026 76 DADVIIICVPTPLKEDGSPDLSYV-ESAAETIAKHLRKGATVVLESTVPPGTTEEVV 131 (411)
T ss_pred hCCEEEEEeCCCCCCCCCcChHHH-HHHHHHHHHhcCCCCEEEEeCcCCCCchHHHH
Confidence 468888887777422111111111 245677778888877666543 2223344454
No 443
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=27.61 E-value=45 Score=32.63 Aligned_cols=34 Identities=15% Similarity=0.090 Sum_probs=24.8
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHH
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVT 264 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~ 264 (416)
.+.+|||+|||.|--.+...... ...+...|.+.
T Consensus 116 ~~k~vLELgCg~~Lp~i~~~~~~-~~~~~fqD~na 149 (282)
T KOG2920|consen 116 SGKRVLELGCGAALPGIFAFVKG-AVSVHFQDFNA 149 (282)
T ss_pred cCceeEecCCcccccchhhhhhc-cceeeeEecch
Confidence 47899999999998888776653 25566666543
No 444
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=27.31 E-value=51 Score=33.26 Aligned_cols=60 Identities=13% Similarity=0.128 Sum_probs=36.2
Q ss_pred CCcEEEEEcCCccchHHHHHHHHHHhcCeEEEehHHHHHHHHHcCCCCCCcccccCc---hHHHHHHHHHHhhC
Q 014919 6 EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGA---NDAASDLIQFARDK 76 (416)
Q Consensus 6 ~~p~~~i~GGaKv~dki~~~~~l~~~~d~~~~gG~~a~~fl~a~g~~ig~s~~e~~~---~~~a~~~~~~~~~~ 76 (416)
.+| |.|.||.|.+| -.+|+.+-+-+=. +-+| |.|.-+|+..+.... ++..+.|.+...+.
T Consensus 281 ~vp-VviAGG~k~~~-~e~L~~v~~a~~~-i~aG--------a~Gv~iGRNIfQ~~~~ea~~~~~~i~~i~~~~ 343 (348)
T PRK09250 281 RRG-LINSGGASKGE-DDLLDAVRTAVIN-KRAG--------GMGLIIGRKAFQRPMAEGVKLLNAIQDVYLDK 343 (348)
T ss_pred Cce-EEEeCCCCCCH-HHHHHHHHHHHHh-hhcC--------CcchhhchhhhcCCcHHHHHHHHHHHHHhcCC
Confidence 345 58999999854 4444444333000 2255 578999998776554 56667776655443
No 445
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=27.26 E-value=72 Score=28.70 Aligned_cols=57 Identities=18% Similarity=0.250 Sum_probs=35.4
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEchH---HHHHHHHHHhC---CCcEEEEEcChhh
Q 014919 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELV---THCRDSLQLSG---ITNGYFIATNATS 287 (416)
Q Consensus 231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~---~~a~~~a~~~~---l~nv~f~~~Da~~ 287 (416)
...|+.||||-=.....+....++..|+-+|.- ..-.+...+.+ ..|.+++.+|+.+
T Consensus 79 ~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~ 141 (183)
T PF04072_consen 79 ARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDLPEVIALKRRLLPESGARPPANYRYVPADLRD 141 (183)
T ss_dssp ESEEEEET-TT--HHHHHHHTTTTEEEEEEE-HHHHHHHHHHHHHTHHHHHEESSEEES-TTS
T ss_pred CcEEEEcCCCCCchHHHhhccccceEEEEeCCHHHHHHHHHHHHhCcccCCcceeEEeccccc
Confidence 358999999999999999887778999999952 22122222221 1356778899875
No 446
>PF07101 DUF1363: Protein of unknown function (DUF1363); InterPro: IPR009795 This family consists of several Trypanosoma brucei putative variant specific antigen proteins of around 80 residues in length.
Probab=27.00 E-value=23 Score=28.78 Aligned_cols=17 Identities=35% Similarity=0.491 Sum_probs=12.2
Q ss_pred EEEEeccccHHHHHHHH
Q 014919 234 VVDIGSGNGLFLLGMAR 250 (416)
Q Consensus 234 vLDIGCG~G~~~~~lA~ 250 (416)
-+|||||.|...-+--+
T Consensus 6 NIDIGcG~GNTmda~fR 22 (124)
T PF07101_consen 6 NIDIGCGAGNTMDAAFR 22 (124)
T ss_pred ccccccCCCcchhhhhh
Confidence 37999999987544333
No 447
>cd04234 AAK_AK AAK_AK: Amino Acid Kinase Superfamily (AAK), Aspartokinase (AK); this CD includes the N-terminal catalytic domain of aspartokinase (4-L-aspartate-4-phosphotransferase;). AK is the first enzyme in the biosynthetic pathway of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. It also catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind amino acids leading to allosteric regulation of the enzyme. In Escherichia coli, three different aspartokinase isoenzymes are regulated specifically by lysine, methionine, and threonine. AK-HSDHI (ThrA) and AK-HSDHII (MetL) are bifunctional enzymes that consist of an N-terminal AK and a C-terminal homoserine dehyd
Probab=26.72 E-value=4e+02 Score=24.76 Aligned_cols=30 Identities=10% Similarity=0.130 Sum_probs=23.8
Q ss_pred hhhHHHHHHHhccCCeEEEeccceEEEeCC
Q 014919 116 PRSVEEITSTITKCKKVIWVGPVKFRFSSQ 145 (416)
Q Consensus 116 p~T~~~~~~~~~~a~~i~wnGp~G~~e~~~ 145 (416)
-.++..++..++-.+-++|.-.-|++..+|
T Consensus 139 D~~A~~lA~~l~A~~l~~~tdV~Gvy~~dP 168 (227)
T cd04234 139 DYSAAALAAALGADEVEIWTDVDGIYTADP 168 (227)
T ss_pred HHHHHHHHHHhCCCEEEEEECCCccCCCCC
Confidence 567778888888667778999999996553
No 448
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=26.69 E-value=4e+02 Score=22.71 Aligned_cols=67 Identities=18% Similarity=0.218 Sum_probs=42.2
Q ss_pred CCeEEEEeccccHHH-HHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCC
Q 014919 231 QPLVVDIGSGNGLFL-LGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN 309 (416)
Q Consensus 231 ~~~vLDIGCG~G~~~-~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpd 309 (416)
..+|+|||-|-=.-. ..|+++ ...++++|+.+. + ..+.++|+..|+.+- .-.+ -...|.|+..=|.
T Consensus 14 ~gkVvEVGiG~~~~VA~~L~e~--g~dv~atDI~~~---~----a~~g~~~v~DDitnP-~~~i---Y~~A~lIYSiRpp 80 (129)
T COG1255 14 RGKVVEVGIGFFLDVAKRLAER--GFDVLATDINEK---T----APEGLRFVVDDITNP-NISI---YEGADLIYSIRPP 80 (129)
T ss_pred CCcEEEEccchHHHHHHHHHHc--CCcEEEEecccc---c----CcccceEEEccCCCc-cHHH---hhCccceeecCCC
Confidence 468999998754333 334444 488999999764 1 125588999998763 1011 1346888877444
Q ss_pred C
Q 014919 310 P 310 (416)
Q Consensus 310 p 310 (416)
|
T Consensus 81 p 81 (129)
T COG1255 81 P 81 (129)
T ss_pred H
Confidence 4
No 449
>cd00218 GlcAT-I Beta1,3-glucuronyltransferase I (GlcAT-I) is involved in the initial steps of proteoglycan synthesis. Beta1,3-glucuronyltransferase I (GlcAT-I) domain; GlcAT-I is a Key enzyme involved in the initial steps of proteoglycan synthesis. GlcAT-I catalyzes the transfer of a glucuronic acid moiety from the uridine diphosphate-glucuronic acid (UDP-GlcUA) to the common linkage region of trisaccharide Gal-beta-(1-3)-Gal-beta-(1-4)-Xyl of proteoglycans. The enzyme has two subdomains that bind the donor and acceptor substrate separately. The active site is located at the cleft between both subdomains in which the trisaccharide molecule is oriented perpendicular to the UDP. This family has been classified as Glycosyltransferase family 43 (GT-43).
Probab=26.43 E-value=1.2e+02 Score=28.81 Aligned_cols=57 Identities=16% Similarity=0.229 Sum_probs=34.4
Q ss_pred eeEEEEECCCC----CCCCcchhhhhhhHHHHHHHHhhc--cCCcEEEEEeCcHHHHHHHHHHHHh
Q 014919 300 LILVSIQCPNP----DFNRPEHRWRMVQRSLVEAVSDLL--VHDGKVFLQSDIEEVMLRMKQQFLE 359 (416)
Q Consensus 300 ~D~v~~~fpdp----w~k~~h~krRl~~~~~l~~i~r~L--kpgG~l~l~tD~~~~~~~~~~~~~~ 359 (416)
+...+++++.| |.+.+....| ...|+.+...+ +..|.++|+-|...|--++.+.+++
T Consensus 56 l~y~HL~~~~~~~~~~~~~rg~~qR---n~AL~~ir~~~~~~~~GVVyFADDdN~Ysl~lF~emR~ 118 (223)
T cd00218 56 LMYTHLNAKTPSDPTWLKPRGVEQR---NLALRWIREHLSAKLDGVVYFADDDNTYDLELFEEMRK 118 (223)
T ss_pred CceEEeccCCCCCcccCCcccHHHH---HHHHHHHHhccccCcceEEEEccCCCcccHHHHHHHhc
Confidence 55566666544 4333322222 25677777776 7889999998877775555555544
No 450
>PRK08507 prephenate dehydrogenase; Validated
Probab=26.15 E-value=3.9e+02 Score=25.49 Aligned_cols=84 Identities=12% Similarity=0.087 Sum_probs=44.4
Q ss_pred EEEEeccc--cHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCCCC
Q 014919 234 VVDIGSGN--GLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPD 311 (416)
Q Consensus 234 vLDIGCG~--G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdpw 311 (416)
|.=||+|. +.++..|++.....+++++|......+.+.+.+... . ..+..+. .. .|.|++.-|+.-
T Consensus 3 I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~--~-~~~~~~~--------~~-aD~Vilavp~~~ 70 (275)
T PRK08507 3 IGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVD--E-IVSFEEL--------KK-CDVIFLAIPVDA 70 (275)
T ss_pred EEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCc--c-cCCHHHH--------hc-CCEEEEeCcHHH
Confidence 44467654 333344443333357999998665555555544321 0 1122221 12 688887755331
Q ss_pred CCCcchhhhhhhHHHHHHHHhhccCCcEEE
Q 014919 312 FNRPEHRWRMVQRSLVEAVSDLLVHDGKVF 341 (416)
Q Consensus 312 ~k~~h~krRl~~~~~l~~i~r~LkpgG~l~ 341 (416)
..+.+.++.. ++++..+.
T Consensus 71 -----------~~~~~~~l~~-l~~~~iv~ 88 (275)
T PRK08507 71 -----------IIEILPKLLD-IKENTTII 88 (275)
T ss_pred -----------HHHHHHHHhc-cCCCCEEE
Confidence 2366777777 88776444
No 451
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=25.99 E-value=5.4e+02 Score=24.75 Aligned_cols=104 Identities=12% Similarity=-0.007 Sum_probs=0.0
Q ss_pred Eeccc-cHHHHHHHHh-CCCCeEEEE-ch-HHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCCCCC
Q 014919 237 IGSGN-GLFLLGMARK-RKDLNFLGL-EL-VTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDF 312 (416)
Q Consensus 237 IGCG~-G~~~~~lA~~-~p~~~~iGv-D~-~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdpw~ 312 (416)
||||. |......... .|+.+++++ |. -.++.+.++..+ ..-...|..++ -...|.|+..-|+.
T Consensus 12 IG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g---~~~~~~~~eel--------l~~~D~Vvi~tp~~-- 78 (271)
T PRK13302 12 AGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLR---RPPPVVPLDQL--------ATHADIVVEAAPAS-- 78 (271)
T ss_pred ECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcC---CCcccCCHHHH--------hcCCCEEEECCCcH--
Q ss_pred CCcchhhhhhhHHHHHHHHhhccCCc-EEEEEeCcHHHHHHHHHHHHhCCCCce
Q 014919 313 NRPEHRWRMVQRSLVEAVSDLLVHDG-KVFLQSDIEEVMLRMKQQFLEYGKGKL 365 (416)
Q Consensus 313 k~~h~krRl~~~~~l~~i~r~LkpgG-~l~l~tD~~~~~~~~~~~~~~~~~~~~ 365 (416)
...+.....|+.|- .+...+......+++.+..++++..+.
T Consensus 79 ------------~h~e~~~~aL~aGk~Vi~~s~gal~~~~~L~~~A~~~g~~l~ 120 (271)
T PRK13302 79 ------------VLRAIVEPVLAAGKKAIVLSVGALLRNEDLIDLARQNGGQII 120 (271)
T ss_pred ------------HHHHHHHHHHHcCCcEEEecchhHHhHHHHHHHHHHcCCEEE
No 452
>COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane]
Probab=25.67 E-value=4.1e+02 Score=26.55 Aligned_cols=59 Identities=12% Similarity=0.087 Sum_probs=36.3
Q ss_pred HHHHHHHhCCCCeEEEEchHHHHHHH---HHHhCCCcEEEEEcChhhh--hhhhhccCCCceeEEE
Q 014919 244 FLLGMARKRKDLNFLGLELVTHCRDS---LQLSGITNGYFIATNATST--FRSIVASYPGKLILVS 304 (416)
Q Consensus 244 ~~~~lA~~~p~~~~iGvD~~~~a~~~---a~~~~l~nv~f~~~Da~~l--~~~~~~~~~~s~D~v~ 304 (416)
|...+.+++|+.+++-+|-+..|-.. +.-.+.+|.+|+++|+.+. +.+.| .....|.|.
T Consensus 16 fvr~~~~~~~d~~v~~~DkLTYAgn~~~l~~~~~~~~~~fv~~DI~D~~~v~~~~--~~~~~D~Vv 79 (340)
T COG1088 16 FVRYILNKHPDDHVVNLDKLTYAGNLENLADVEDSPRYRFVQGDICDRELVDRLF--KEYQPDAVV 79 (340)
T ss_pred HHHHHHhcCCCceEEEEecccccCCHHHHHhhhcCCCceEEeccccCHHHHHHHH--HhcCCCeEE
Confidence 44556667899889999954332111 1123456899999999753 24444 234577663
No 453
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=25.19 E-value=6.3e+02 Score=24.46 Aligned_cols=108 Identities=15% Similarity=0.137 Sum_probs=55.7
Q ss_pred EEEEeccccHHHHHHHHh--CCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCCCC
Q 014919 234 VVDIGSGNGLFLLGMARK--RKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPD 311 (416)
Q Consensus 234 vLDIGCG~G~~~~~lA~~--~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdpw 311 (416)
|-=||||. ....||.. ..+.++++.|......+.+.+.+... ..+..++.. .....|.|++.-|+..
T Consensus 3 Ig~IGlG~--mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~~----~~s~~~~~~-----~~~~~dvIi~~vp~~~ 71 (298)
T TIGR00872 3 LGLIGLGR--MGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTG----VANLRELSQ-----RLSAPRVVWVMVPHGI 71 (298)
T ss_pred EEEEcchH--HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcc----cCCHHHHHh-----hcCCCCEEEEEcCchH
Confidence 34467754 44444443 24568888997655555544443211 123333311 1134588887755431
Q ss_pred CCCcchhhhhhhHHHHHHHHhhccCCcEEEEEeC-cHHHHHHHHHHHHhCCCC
Q 014919 312 FNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD-IEEVMLRMKQQFLEYGKG 363 (416)
Q Consensus 312 ~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~tD-~~~~~~~~~~~~~~~~~~ 363 (416)
....++++...|++|-.++-.+. .+.-.....+.+++.+..
T Consensus 72 -----------~~~v~~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~ 113 (298)
T TIGR00872 72 -----------VDAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIH 113 (298)
T ss_pred -----------HHHHHHHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCe
Confidence 13667888888888755433222 222333344456666643
No 454
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=24.98 E-value=2.5e+02 Score=28.92 Aligned_cols=43 Identities=19% Similarity=0.230 Sum_probs=29.7
Q ss_pred CCcEEEEEcC-CccchHHHHHHHHHHhcCeEEEehHHHHHHHHH
Q 014919 6 EKPYAAIIGG-GNLCNKAAALHFLASRCDGLIFVGLMSFQIMHA 48 (416)
Q Consensus 6 ~~p~~~i~GG-aKv~dki~~~~~l~~~~d~~~~gG~~a~~fl~a 48 (416)
+++.++|+|| .|=.|-=.+.+.+.+.++.+++.|.-+..+...
T Consensus 344 ~~~iilI~Gg~~k~~d~~~l~~~l~~~~~~vil~G~~~~~i~~~ 387 (448)
T PRK03803 344 QGKLVLIAGGDGKGADFSPLREPVAKYVRAVVLIGRDADKIAAA 387 (448)
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHHhhCCEEEEECCCHHHHHHH
Confidence 3578999999 465555555555556799999988766655543
No 455
>cd03420 SirA_RHOD_Pry_redox SirA_RHOD_Pry_redox. SirA-like domain located within a multidomain protein of unknown function. Other domains include RHOD (rhodanese homology domain), and Pry_redox (pyridine nucleotide-disulphide oxidoreductase) as well as a C-terminal domain that corresponds to COG2210. This fold is referred to as a two-layered alpha/beta sandwich, structurally similar to that of translation initiation factor 3.
Probab=24.90 E-value=2e+02 Score=21.39 Aligned_cols=39 Identities=8% Similarity=0.003 Sum_probs=32.1
Q ss_pred HHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCCce
Q 014919 327 VEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKL 365 (416)
Q Consensus 327 l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~~~ 365 (416)
++...+-|++|..|.+.+|++...+.+....++.|+...
T Consensus 16 ~kkal~~l~~G~~l~V~~d~~~a~~di~~~~~~~G~~~~ 54 (69)
T cd03420 16 LKKEIDKLQDGEQLEVKASDPGFARDAQAWCKSTGNTLI 54 (69)
T ss_pred HHHHHHcCCCCCEEEEEECCccHHHHHHHHHHHcCCEEE
Confidence 456667788999999999998888888888888888754
No 456
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=24.79 E-value=2.3e+02 Score=23.20 Aligned_cols=25 Identities=28% Similarity=0.477 Sum_probs=16.0
Q ss_pred EEec-c-ccHHHHHHHHhCCCCeEEEE
Q 014919 236 DIGS-G-NGLFLLGMARKRKDLNFLGL 260 (416)
Q Consensus 236 DIGC-G-~G~~~~~lA~~~p~~~~iGv 260 (416)
=+|+ | .|.....+....|+.+++++
T Consensus 4 iiG~~g~~g~~~~~~l~~~~~~~l~av 30 (122)
T smart00859 4 IVGATGYVGQELLRLLAEHPDFEVVAL 30 (122)
T ss_pred EECCCChHHHHHHHHHhcCCCceEEEE
Confidence 3564 4 44445555666788888888
No 457
>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]
Probab=24.78 E-value=62 Score=30.69 Aligned_cols=40 Identities=20% Similarity=0.189 Sum_probs=34.4
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHH
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDS 269 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~ 269 (416)
.+...+|.=.|.|.++..+.+.+|+...+++|....|.+.
T Consensus 43 ~g~sf~DmTfGagGHt~~ilqk~se~k~yalDrDP~A~~L 82 (303)
T KOG2782|consen 43 RGRSFVDMTFGAGGHTSSILQKHSELKNYALDRDPVARKL 82 (303)
T ss_pred CCceEEEEeccCCcchHHHHHhCcHhhhhhhccChHHHHH
Confidence 5789999999999999999999999999999965444443
No 458
>cd03422 YedF YedF is a bacterial SirA-like protein of unknown function. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=24.66 E-value=1.5e+02 Score=22.12 Aligned_cols=39 Identities=13% Similarity=-0.038 Sum_probs=31.8
Q ss_pred HHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCCce
Q 014919 327 VEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKL 365 (416)
Q Consensus 327 l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~~~ 365 (416)
.+...+.|++|..|.+.+|++.-.+.+...+++.|+...
T Consensus 16 ~kkal~~l~~G~~l~V~~d~~~s~~ni~~~~~~~g~~v~ 54 (69)
T cd03422 16 TLEALPSLKPGEILEVISDCPQSINNIPIDARNHGYKVL 54 (69)
T ss_pred HHHHHHcCCCCCEEEEEecCchHHHHHHHHHHHcCCEEE
Confidence 456667789999999999998888888888888888754
No 459
>COG2044 Predicted peroxiredoxins [General function prediction only]
Probab=24.49 E-value=1.6e+02 Score=25.00 Aligned_cols=55 Identities=11% Similarity=0.116 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhhCCCeeecceeEEEecCCCCCceeeecCCCCCCCCCccccChhhHHHHHHHhccCCe
Q 014919 64 DAASDLIQFARDKHITILYPKDFWCTKIHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKK 131 (416)
Q Consensus 64 ~~a~~~~~~~~~~~~~i~lP~D~~v~~~~~~~~~~~~~~~~i~~~~~~~DiGp~T~~~~~~~~~~a~~ 131 (416)
+...++++.+++.|+|+++-. ... +......+++.+|..|+. ..+|...+..++.
T Consensus 62 ~~l~~~~~~a~e~GVk~yvCe-----~s~---~~~~~~ed~l~egvkI~G-----~~tF~~l~~ea~~ 116 (120)
T COG2044 62 PPLEELIKQAIEAGVKIYVCE-----QSL---KLRGIKEDDLVEGVKIVG-----AATFLLLASEADV 116 (120)
T ss_pred CCHHHHHHHHHHcCCEEEEEc-----chh---hhcCcchhhhhhccEecc-----HHHHHHHHhCcCc
Confidence 455678888999999996533 321 111223455666665543 4556666666665
No 460
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=24.18 E-value=2.8e+02 Score=27.52 Aligned_cols=69 Identities=17% Similarity=0.046 Sum_probs=38.0
Q ss_pred CeEEEEeccc-cHHHHHHHHhCCCCeEEEE-ch--HHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEE
Q 014919 232 PLVVDIGSGN-GLFLLGMARKRKDLNFLGL-EL--VTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 306 (416)
Q Consensus 232 ~~vLDIGCG~-G~~~~~lA~~~p~~~~iGv-D~--~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~ 306 (416)
-++-=||||. |...+....+.|+..+.++ |+ ....++.+++.|. .....+...++.+. .-..+|.|++.
T Consensus 5 lrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~Gi---~~~~~~ie~LL~~~---~~~dIDiVf~A 77 (302)
T PRK08300 5 LKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRLGV---ATSAEGIDGLLAMP---EFDDIDIVFDA 77 (302)
T ss_pred CeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHcCC---CcccCCHHHHHhCc---CCCCCCEEEEC
Confidence 4577799998 6653333334677777754 33 2234455555553 33345666664310 01458888765
No 461
>PRK03958 tRNA 2'-O-methylase; Reviewed
Probab=24.11 E-value=83 Score=28.63 Aligned_cols=25 Identities=12% Similarity=0.179 Sum_probs=18.8
Q ss_pred CCcEEEEEcCCccchHHHHHHHHHHhcCeEE
Q 014919 6 EKPYAAIIGGGNLCNKAAALHFLASRCDGLI 36 (416)
Q Consensus 6 ~~p~~~i~GGaKv~dki~~~~~l~~~~d~~~ 36 (416)
++|++.|+||-||.. .+.+.||..+
T Consensus 103 ~~p~LIvvGg~gvp~------evye~aDynl 127 (176)
T PRK03958 103 GEPLLIVVGAEKVPR------EVYELADWNV 127 (176)
T ss_pred CCcEEEEEcCCCCCH------HHHhhCCEEe
Confidence 678888888887754 5677788877
No 462
>PF00186 DHFR_1: Dihydrofolate reductase; InterPro: IPR001796 Dihydrofolate reductase (DHFR) (1.5.1.3 from EC) catalyses the NADPH-dependent reduction of dihydrofolate to tetrahydrofolate, an essential step in de novo synthesis both of glycine and of purines and deoxythymidine phosphate (the precursors of DNA synthesis) [], and important also in the conversion of deoxyuridine monophosphate to deoxythymidine monophosphate. Although DHFR is found ubiquitously in prokaryotes and eukaryotes, and is found in all dividing cells, maintaining levels of fully reduced folate coenzymes, the catabolic steps are still not well understood []. Bacterial species possesses distinct DHFR enzymes (based on their pattern of binding diaminoheterocyclic molecules), but mammalian DHFRs are highly similar []. The active site is situated in the N-terminal half of the sequence, which includes a conserved Pro-Trp dipeptide; the tryptophan has been shown [] to be involved in the binding of substrate by the enzyme. Its central role in DNA precursor synthesis, coupled with its inhibition by antagonists such as trimethoprim and methotrexate, which are used as anti-bacterial or anti-cancer agents, has made DHFR a target of anticancer chemotherapy. However, resistance has developed against some drugs, as a result of changes in DHFR itself [].; GO: 0004146 dihydrofolate reductase activity, 0006545 glycine biosynthetic process, 0009165 nucleotide biosynthetic process, 0055114 oxidation-reduction process; PDB: 1ZDR_B 3SA2_B 3JWK_B 3E0B_A 3S9U_B 3FL9_H 3FL8_F 2QK8_A 3JW3_A 3SA1_B ....
Probab=24.05 E-value=57 Score=29.08 Aligned_cols=22 Identities=23% Similarity=0.427 Sum_probs=9.9
Q ss_pred EEEEcCCccchHHHHHHHHHHhcCeEEE
Q 014919 10 AAIIGGGNLCNKAAALHFLASRCDGLIF 37 (416)
Q Consensus 10 ~~i~GGaKv~dki~~~~~l~~~~d~~~~ 37 (416)
++|+||+.| .+..++.||.|.+
T Consensus 94 i~ViGG~~i------y~~~l~~~d~l~l 115 (161)
T PF00186_consen 94 IFVIGGAEI------YEQFLPYADRLYL 115 (161)
T ss_dssp EEEEE-HHH------HHHHHHGESEEEE
T ss_pred EEEECCHHH------HHHHHHhCCeEEE
Confidence 455555532 3344445555554
No 463
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=23.82 E-value=8.4e+02 Score=25.38 Aligned_cols=121 Identities=17% Similarity=0.211 Sum_probs=66.5
Q ss_pred CeEEEEeccccHHHHHHHHh--CCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhc----------cCCCc
Q 014919 232 PLVVDIGSGNGLFLLGMARK--RKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVA----------SYPGK 299 (416)
Q Consensus 232 ~~vLDIGCG~G~~~~~lA~~--~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~----------~~~~s 299 (416)
.+|-=||= |..++.+|.. -.+.+++|+|+.+...++..+ |. .....-+...++.+... ..-..
T Consensus 10 ~~I~ViGL--GYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~-G~--~~i~e~~~~~~v~~~v~~g~lraTtd~~~l~~ 84 (436)
T COG0677 10 ATIGVIGL--GYVGLPLAAAFASAGFKVIGVDINQKKVDKLNR-GE--SYIEEPDLDEVVKEAVESGKLRATTDPEELKE 84 (436)
T ss_pred eEEEEEcc--ccccHHHHHHHHHcCCceEeEeCCHHHHHHHhC-Cc--ceeecCcHHHHHHHHHhcCCceEecChhhccc
Confidence 44555555 4455554443 346789999998777665432 21 22333333322111110 00125
Q ss_pred eeEEEEECCCCCCCCcchhhhhh-hHHHHHHHHhhccCCcEEEEE-eCcHHHHHHHHHHHHh
Q 014919 300 LILVSIQCPNPDFNRPEHRWRMV-QRSLVEAVSDLLVHDGKVFLQ-SDIEEVMLRMKQQFLE 359 (416)
Q Consensus 300 ~D~v~~~fpdpw~k~~h~krRl~-~~~~l~~i~r~LkpgG~l~l~-tD~~~~~~~~~~~~~~ 359 (416)
.|.+.+.-|-|.-+.+.. .+- -....+.+.+.|++|-.+.+. |-.+..-+++..-+.+
T Consensus 85 ~dv~iI~VPTPl~~~~~p--Dls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle 144 (436)
T COG0677 85 CDVFIICVPTPLKKYREP--DLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLE 144 (436)
T ss_pred CCEEEEEecCCcCCCCCC--ChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHh
Confidence 677777778886443222 221 146678899999999988886 4444455666654444
No 464
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=23.77 E-value=7.7e+02 Score=24.97 Aligned_cols=66 Identities=17% Similarity=0.206 Sum_probs=43.1
Q ss_pred EeccccHHHHHHHHh---CC--CCeEEEEc--hHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCC
Q 014919 237 IGSGNGLFLLGMARK---RK--DLNFLGLE--LVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN 309 (416)
Q Consensus 237 IGCG~G~~~~~lA~~---~p--~~~~iGvD--~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpd 309 (416)
+|| |.++...++. .| +..+++|= -..+|++-|++++++|.+. .+..++++ .+..+|.|++.-|.
T Consensus 12 ~g~--g~ia~~f~~al~~~p~s~~~Ivava~~s~~~A~~fAq~~~~~~~k~-y~syEeLa------kd~~vDvVyi~~~~ 82 (351)
T KOG2741|consen 12 VGA--GRIARDFVRALHTLPESNHQIVAVADPSLERAKEFAQRHNIPNPKA-YGSYEELA------KDPEVDVVYISTPN 82 (351)
T ss_pred eeh--hHHHHHHHHHhccCcccCcEEEEEecccHHHHHHHHHhcCCCCCcc-ccCHHHHh------cCCCcCEEEeCCCC
Confidence 345 4444444443 36 67788875 2567888888888876553 45556553 46789999998777
Q ss_pred CC
Q 014919 310 PD 311 (416)
Q Consensus 310 pw 311 (416)
|.
T Consensus 83 ~q 84 (351)
T KOG2741|consen 83 PQ 84 (351)
T ss_pred cc
Confidence 64
No 465
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=23.74 E-value=5.3e+02 Score=24.29 Aligned_cols=37 Identities=16% Similarity=0.483 Sum_probs=27.8
Q ss_pred CCCCCCCCCccccChhhHHHHHHH-----h------ccCCeEEEeccc
Q 014919 102 SHGIPDGWEPVDIGPRSVEEITST-----I------TKCKKVIWVGPV 138 (416)
Q Consensus 102 ~~~i~~~~~~~DiGp~T~~~~~~~-----~------~~a~~i~wnGp~ 138 (416)
...+++.|.+..+...+++++.+. + |..+|++++||+
T Consensus 144 a~gL~~~~LGr~i~~e~i~~L~~~~~~~gvd~~GEgGEyhT~V~d~Pl 191 (223)
T TIGR00290 144 AEGLDESWLGRRIDRKMIDELKKLNEKYGIHPAGEGGEFETLVLDAPI 191 (223)
T ss_pred cCCCChHHcCCcccHHHHHHHHHHHhccCCCccCCCceEEEEEecCcc
Confidence 345778899999998889888764 2 344788888886
No 466
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=23.72 E-value=4.6e+02 Score=25.57 Aligned_cols=93 Identities=17% Similarity=0.147 Sum_probs=49.9
Q ss_pred CeEEEEecc-ccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcC---hhhhhhhhhccCCCceeEEEEEC
Q 014919 232 PLVVDIGSG-NGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATN---ATSTFRSIVASYPGKLILVSIQC 307 (416)
Q Consensus 232 ~~vLDIGCG-~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~D---a~~l~~~~~~~~~~s~D~v~~~f 307 (416)
..||=.|+| .|..++.+|+......++++|....-.+.+.+.+.+. ++..+ ..+-+.... ....+|.++-..
T Consensus 176 ~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~--v~~~~~~~~~~~~~~~~--~~~~vdvvld~~ 251 (350)
T cd08256 176 DVVVLAGAGPLGLGMIGAARLKNPKKLIVLDLKDERLALARKFGADV--VLNPPEVDVVEKIKELT--GGYGCDIYIEAT 251 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCHHHHHHHHHcCCcE--EecCCCcCHHHHHHHHh--CCCCCCEEEECC
Confidence 333336663 4555677777764456888886554445555556532 22221 111111111 223588775321
Q ss_pred CCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEE
Q 014919 308 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 342 (416)
Q Consensus 308 pdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l 342 (416)
.. ...+....+.|+++|++..
T Consensus 252 g~--------------~~~~~~~~~~l~~~G~~v~ 272 (350)
T cd08256 252 GH--------------PSAVEQGLNMIRKLGRFVE 272 (350)
T ss_pred CC--------------hHHHHHHHHHhhcCCEEEE
Confidence 11 1456778899999998865
No 467
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=23.35 E-value=5.8e+02 Score=25.21 Aligned_cols=96 Identities=9% Similarity=0.050 Sum_probs=50.4
Q ss_pred CCeEEEEecc-ccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcE-EEEEc--ChhhhhhhhhccCCCceeEEEEE
Q 014919 231 QPLVVDIGSG-NGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNG-YFIAT--NATSTFRSIVASYPGKLILVSIQ 306 (416)
Q Consensus 231 ~~~vLDIGCG-~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv-~f~~~--Da~~l~~~~~~~~~~s~D~v~~~ 306 (416)
+..+|=.|+| .|..+..+|+...-..+++++....-.+.+.+.+.+.+ ..... +..+.+.... .+.+|.++-.
T Consensus 184 g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~l~~~~---~~~~d~vid~ 260 (365)
T cd05279 184 GSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQLGATECINPRDQDKPIVEVLTEMT---DGGVDYAFEV 260 (365)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCCeecccccccchHHHHHHHHh---CCCCcEEEEC
Confidence 4455556764 24445556776644458888854443444445554321 11111 2111112222 3458877532
Q ss_pred CCCCCCCCcchhhhhhhHHHHHHHHhhcc-CCcEEEEE
Q 014919 307 CPNPDFNRPEHRWRMVQRSLVEAVSDLLV-HDGKVFLQ 343 (416)
Q Consensus 307 fpdpw~k~~h~krRl~~~~~l~~i~r~Lk-pgG~l~l~ 343 (416)
... ...+....+.|+ ++|++...
T Consensus 261 ~g~--------------~~~~~~~~~~l~~~~G~~v~~ 284 (365)
T cd05279 261 IGS--------------ADTLKQALDATRLGGGTSVVV 284 (365)
T ss_pred CCC--------------HHHHHHHHHHhccCCCEEEEE
Confidence 111 256778888999 99998864
No 468
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=23.31 E-value=3.9e+02 Score=21.38 Aligned_cols=106 Identities=18% Similarity=0.151 Sum_probs=63.4
Q ss_pred EEEEeccccHH--HHHHHHhCCCCeEEEE-chHHH-HHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCC
Q 014919 234 VVDIGSGNGLF--LLGMARKRKDLNFLGL-ELVTH-CRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN 309 (416)
Q Consensus 234 vLDIGCG~G~~--~~~lA~~~p~~~~iGv-D~~~~-a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpd 309 (416)
+.=||||.-.. ...+.+..|+.+++|+ |.... +.+.++..+.+ ...|..+++. ...+|.|++.-|+
T Consensus 3 v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~----~~~~~~~ll~------~~~~D~V~I~tp~ 72 (120)
T PF01408_consen 3 VGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIP----VYTDLEELLA------DEDVDAVIIATPP 72 (120)
T ss_dssp EEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSE----EESSHHHHHH------HTTESEEEEESSG
T ss_pred EEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhccc----chhHHHHHHH------hhcCCEEEEecCC
Confidence 55688865432 2234444578888764 55433 33333445544 6677777643 3479999998554
Q ss_pred CCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE---eCcHHHHHHHHHHHHhCCCC
Q 014919 310 PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ---SDIEEVMLRMKQQFLEYGKG 363 (416)
Q Consensus 310 pw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~---tD~~~~~~~~~~~~~~~~~~ 363 (416)
.. | .+.+.+.|+-|-.+++. +...+-.+++.+..++++..
T Consensus 73 ~~----h----------~~~~~~~l~~g~~v~~EKP~~~~~~~~~~l~~~a~~~~~~ 115 (120)
T PF01408_consen 73 SS----H----------AEIAKKALEAGKHVLVEKPLALTLEEAEELVEAAKEKGVK 115 (120)
T ss_dssp GG----H----------HHHHHHHHHTTSEEEEESSSSSSHHHHHHHHHHHHHHTSC
T ss_pred cc----h----------HHHHHHHHHcCCEEEEEcCCcCCHHHHHHHHHHHHHhCCE
Confidence 31 2 34556677777777775 33455567777777776643
No 469
>PRK10083 putative oxidoreductase; Provisional
Probab=23.19 E-value=6.8e+02 Score=24.09 Aligned_cols=96 Identities=15% Similarity=0.102 Sum_probs=48.8
Q ss_pred CCeEEEEecc-ccHHHHHHHHh-CCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECC
Q 014919 231 QPLVVDIGSG-NGLFLLGMARK-RKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP 308 (416)
Q Consensus 231 ~~~vLDIGCG-~G~~~~~lA~~-~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fp 308 (416)
+.+||=.||| .|..++.+|+. ..-..++++|......+.+.+.|.+.+ +..+-..+ .+.+......+|.++-...
T Consensus 161 g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~--i~~~~~~~-~~~~~~~g~~~d~vid~~g 237 (339)
T PRK10083 161 QDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKESGADWV--INNAQEPL-GEALEEKGIKPTLIIDAAC 237 (339)
T ss_pred CCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHhCCcEE--ecCccccH-HHHHhcCCCCCCEEEECCC
Confidence 4566667754 23345556664 344468889875555555555665422 11111111 1111101112445432211
Q ss_pred CCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919 309 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 343 (416)
Q Consensus 309 dpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~ 343 (416)
. +..+....+.|+++|++...
T Consensus 238 ~--------------~~~~~~~~~~l~~~G~~v~~ 258 (339)
T PRK10083 238 H--------------PSILEEAVTLASPAARIVLM 258 (339)
T ss_pred C--------------HHHHHHHHHHhhcCCEEEEE
Confidence 0 24567778899999998764
No 470
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=23.16 E-value=1.9e+02 Score=24.94 Aligned_cols=88 Identities=10% Similarity=0.208 Sum_probs=43.0
Q ss_pred CCeEEEEeccccHHHHH-HHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCC
Q 014919 231 QPLVVDIGSGNGLFLLG-MARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN 309 (416)
Q Consensus 231 ~~~vLDIGCG~G~~~~~-lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpd 309 (416)
..+++|||-|.=.-... |+++ +..++++|+... ++. ..+.++..|+.+- +..+ -...|+|+..=|.
T Consensus 14 ~~kiVEVGiG~~~~vA~~L~~~--G~dV~~tDi~~~---~a~----~g~~~v~DDif~P-~l~i---Y~~a~lIYSiRPP 80 (127)
T PF03686_consen 14 YGKIVEVGIGFNPEVAKKLKER--GFDVIATDINPR---KAP----EGVNFVVDDIFNP-NLEI---YEGADLIYSIRPP 80 (127)
T ss_dssp SSEEEEET-TT--HHHHHHHHH--S-EEEEE-SS-S-----------STTEE---SSS---HHH---HTTEEEEEEES--
T ss_pred CCcEEEECcCCCHHHHHHHHHc--CCcEEEEECccc---ccc----cCcceeeecccCC-CHHH---hcCCcEEEEeCCC
Confidence 46999999997665444 4444 589999998664 221 3467888887652 1111 1368999987554
Q ss_pred CCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEEe
Q 014919 310 PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 344 (416)
Q Consensus 310 pw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~t 344 (416)
|- +++.+++ +++. -|.-+++.+
T Consensus 81 ~E----------l~~~il~-lA~~--v~adlii~p 102 (127)
T PF03686_consen 81 PE----------LQPPILE-LAKK--VGADLIIRP 102 (127)
T ss_dssp TT----------SHHHHHH-HHHH--HT-EEEEE-
T ss_pred hH----------HhHHHHH-HHHH--hCCCEEEEC
Confidence 42 3344444 4443 256777765
No 471
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=23.06 E-value=6.3e+02 Score=24.44 Aligned_cols=95 Identities=12% Similarity=0.060 Sum_probs=51.7
Q ss_pred CCeEEEEec-cccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEc--ChhhhhhhhhccCCCceeEEEEEC
Q 014919 231 QPLVVDIGS-GNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIAT--NATSTFRSIVASYPGKLILVSIQC 307 (416)
Q Consensus 231 ~~~vLDIGC-G~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~--Da~~l~~~~~~~~~~s~D~v~~~f 307 (416)
+..+|=.|| +.|..+..+|+.. +.++++++-+..-.+.+.+.+.+.+--.+. +....+.... .+.+|.++-..
T Consensus 166 ~~~vlV~g~g~vg~~~~~~a~~~-G~~vi~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~---~~~~d~vi~~~ 241 (345)
T cd08260 166 GEWVAVHGCGGVGLSAVMIASAL-GARVIAVDIDDDKLELARELGAVATVNASEVEDVAAAVRDLT---GGGAHVSVDAL 241 (345)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc-CCeEEEEeCCHHHHHHHHHhCCCEEEccccchhHHHHHHHHh---CCCCCEEEEcC
Confidence 455665665 3455666777765 677888875444344444456533221121 2211112112 23688775431
Q ss_pred CCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919 308 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 343 (416)
Q Consensus 308 pdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~ 343 (416)
.. ...+....+.|+++|.+...
T Consensus 242 g~--------------~~~~~~~~~~l~~~g~~i~~ 263 (345)
T cd08260 242 GI--------------PETCRNSVASLRKRGRHVQV 263 (345)
T ss_pred CC--------------HHHHHHHHHHhhcCCEEEEe
Confidence 10 24567788999999988753
No 472
>PF02875 Mur_ligase_C: Mur ligase family, glutamate ligase domain This Prosite entry is a subset of the Pfam family.; InterPro: IPR004101 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes the C-terminal domain of folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) []. The C-terminal domain is almost always associated with the cytoplasmic peptidoglycan synthetases, N-terminal domain (see IPR000713 from INTERPRO).; GO: 0005524 ATP binding, 0016874 ligase activity, 0009058 biosynthetic process; PDB: 2Y68_A 3UAG_A 4UAG_A 2UAG_A 1E0D_A 2XPC_A 2WJP_A 2VTE_A 2Y67_A 1EEH_A ....
Probab=22.94 E-value=99 Score=24.11 Aligned_cols=35 Identities=20% Similarity=0.211 Sum_probs=26.1
Q ss_pred CCCcEEEEEcCC-----ccchHHHHHHHHHHh-cCeEEEeh
Q 014919 5 DEKPYAAIIGGG-----NLCNKAAALHFLASR-CDGLIFVG 39 (416)
Q Consensus 5 ~~~p~~~i~GGa-----Kv~dki~~~~~l~~~-~d~~~~gG 39 (416)
+.++.++|+|.. |-.+....+..++.. +|.+++.|
T Consensus 39 ~~~~~i~V~G~~~d~g~~~~~~~~~~~~~~~~~~d~vi~~~ 79 (91)
T PF02875_consen 39 PKGRIIAVFGAMGDLGSKDKDFHEEIGELAAQLADVVILTG 79 (91)
T ss_dssp TTSEEEEEEEEBTT-HTSHHHCHHHHHHHHTTCSSEEEEET
T ss_pred cCCcEEEEEccccccccccHHHHHHHHHHHHhcCCEEEEcC
Confidence 578899999952 444556778888877 88888755
No 473
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=22.77 E-value=7.9e+02 Score=24.70 Aligned_cols=65 Identities=15% Similarity=0.143 Sum_probs=40.4
Q ss_pred CCeEEEEeccccHHHHHHHHhCC-CCeEEEE-ch-HHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEE
Q 014919 231 QPLVVDIGSGNGLFLLGMARKRK-DLNFLGL-EL-VTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 305 (416)
Q Consensus 231 ~~~vLDIGCG~G~~~~~lA~~~p-~~~~iGv-D~-~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~ 305 (416)
..+|.=||||.|..-....++.| +.+++|| |. .++|.+.+++.+.+ ...|..+++ .+..+|.|.+
T Consensus 3 ~~rVgViG~~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~gi~----~y~~~eell------~d~Di~~V~i 70 (343)
T TIGR01761 3 VQSVVVCGTRFGQFYLAAFAAAPERFELAGILAQGSERSRALAHRLGVP----LYCEVEELP------DDIDIACVVV 70 (343)
T ss_pred CcEEEEEeHHHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHhCCC----ccCCHHHHh------cCCCEEEEEe
Confidence 46788899988865444334456 7888885 44 45566666666654 346776663 2345666655
No 474
>PTZ00357 methyltransferase; Provisional
Probab=22.43 E-value=2.6e+02 Score=31.27 Aligned_cols=97 Identities=14% Similarity=0.070 Sum_probs=57.3
Q ss_pred eEEEEeccccHHHHHHHHh----CCCCeEEEEchHHH----HHHHH-H--HhC------CCcEEEEEcChhhhhhhh---
Q 014919 233 LVVDIGSGNGLFLLGMARK----RKDLNFLGLELVTH----CRDSL-Q--LSG------ITNGYFIATNATSTFRSI--- 292 (416)
Q Consensus 233 ~vLDIGCG~G~~~~~lA~~----~p~~~~iGvD~~~~----a~~~a-~--~~~------l~nv~f~~~Da~~l~~~~--- 292 (416)
+|+=+|+|.|-+.-...+. .-..++++||-... .+.+. . ... -..|+++..|++.+-...
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 6899999999885443332 33678999995321 11111 1 111 123999999999872100
Q ss_pred ---hccCCCceeEEEE----ECCCCCCCCcchhhhhhhHHHHHHHHhhccC----CcE
Q 014919 293 ---VASYPGKLILVSI----QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVH----DGK 339 (416)
Q Consensus 293 ---~~~~~~s~D~v~~----~fpdpw~k~~h~krRl~~~~~l~~i~r~Lkp----gG~ 339 (416)
.|..-+.+|+|+. .|-|- .+.|+-|.-+.+.||+ +|.
T Consensus 783 s~~~P~~~gKaDIVVSELLGSFGDN----------ELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 783 SLTLPADFGLCDLIVSELLGSLGDN----------ELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred cccccccccccceehHhhhcccccc----------cCCHHHHHHHHHhhhhhcccccc
Confidence 0001135788753 12221 2457889999999987 776
No 475
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=22.37 E-value=5.3e+02 Score=25.34 Aligned_cols=104 Identities=14% Similarity=0.136 Sum_probs=65.4
Q ss_pred cccHHHHHHHHhC--CCCeEEEEchHH-HHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCCCCCCCcc
Q 014919 240 GNGLFLLGMARKR--KDLNFLGLELVT-HCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPE 316 (416)
Q Consensus 240 G~G~~~~~lA~~~--p~~~~iGvD~~~-~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdpw~k~~h 316 (416)
|.|.....||++. .+..++..|... ++.+.+...|..-. .+..+. -...|.|+...||+-
T Consensus 7 GLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a----~s~~ea--------a~~aDvVitmv~~~~----- 69 (286)
T COG2084 7 GLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVA----ASPAEA--------AAEADVVITMLPDDA----- 69 (286)
T ss_pred cCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCccc----CCHHHH--------HHhCCEEEEecCCHH-----
Confidence 5677777888763 357888888754 33666655564311 111121 245788888766652
Q ss_pred hhhhhhhHHHH---HHHHhhccCCcEEE-EEeCcHHHHHHHHHHHHhCCCCce
Q 014919 317 HRWRMVQRSLV---EAVSDLLVHDGKVF-LQSDIEEVMLRMKQQFLEYGKGKL 365 (416)
Q Consensus 317 ~krRl~~~~~l---~~i~r~LkpgG~l~-l~tD~~~~~~~~~~~~~~~~~~~~ 365 (416)
+ +. ..+ .-+...++||..++ ++|-.++..+.+.+.+++.+....
T Consensus 70 ~----V~-~V~~g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~l 117 (286)
T COG2084 70 A----VR-AVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFL 117 (286)
T ss_pred H----HH-HHHhCccchhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcEE
Confidence 1 11 222 35666788988766 456777788888889999887644
No 476
>COG1553 DsrE Uncharacterized conserved protein involved in intracellular sulfur reduction [Inorganic ion transport and metabolism]
Probab=22.30 E-value=1.1e+02 Score=26.30 Aligned_cols=105 Identities=6% Similarity=-0.008 Sum_probs=67.5
Q ss_pred chHHHHHHHHHHhcCeEEEehHHHHHHHHHcCCCCCCcccccC--chHHHHHHHHHHhhCCCeeecceeEEEecCCCCCc
Q 014919 19 CNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKG--ANDAASDLIQFARDKHITILYPKDFWCTKIHHPNQ 96 (416)
Q Consensus 19 ~dki~~~~~l~~~~d~~~~gG~~a~~fl~a~g~~ig~s~~e~~--~~~~a~~~~~~~~~~~~~i~lP~D~~v~~~~~~~~ 96 (416)
+.-+++-+.++++=..+ ...||...|+-.|+....+. -.+..++.++.+.++|+++.+-+-..-.+.....+
T Consensus 18 ~~A~~fA~all~~gh~~------v~iFly~DgV~~~~~~~~Pa~dEf~l~~~~~~l~~~~gv~v~~C~~ca~~RGv~~~~ 91 (126)
T COG1553 18 FSALRFAEALLEQGHEL------VRLFLYQDGVHNGNKGQKPASDEFNLIQAWLELLTEQGVPVKLCVACALRRGVTEEE 91 (126)
T ss_pred HHHHHHHHHHHHcCCeE------EEEEEeeccccccccCCCCcccccchHHHHHHHHHHcCCcEeeeHHHHHhcCCccch
Confidence 45677778888774222 35788889999998777665 46778888999999999888776322222211111
Q ss_pred eeeecCCCCCCCCCccccChhhHHHHHHHhccCCeEE
Q 014919 97 VEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKKVI 133 (416)
Q Consensus 97 ~~~~~~~~i~~~~~~~DiGp~T~~~~~~~~~~a~~i~ 133 (416)
. .....+. ..+-..-..|.-++++.+..|.|++
T Consensus 92 ~---~~~~~~~-nl~~g~~lsgL~eLa~~~~~~DRVi 124 (126)
T COG1553 92 A---ERLGLAS-NLIEGFELSGLGELAEATLTADRVV 124 (126)
T ss_pred h---hcccchh-ccccceeeccHHHHHHHHHhcccee
Confidence 1 0111222 2233345578889999999999885
No 477
>COG4309 Uncharacterized conserved protein [Function unknown]
Probab=22.10 E-value=1e+02 Score=24.88 Aligned_cols=31 Identities=13% Similarity=0.099 Sum_probs=21.4
Q ss_pred HHHHHhhccCCcEEEEEeCcHHHHHHHHHHHHh
Q 014919 327 VEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLE 359 (416)
Q Consensus 327 l~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~ 359 (416)
+-.....|++|..+.+.+|+++- .++.+|+.
T Consensus 24 If~~~g~L~~Ge~leiisDHdP~--pL~~~L~~ 54 (98)
T COG4309 24 IFSMLGKLKEGESLEIISDHDPR--PLRYQLST 54 (98)
T ss_pred HHHHhcccCCCCceEeecCCCcH--HHHHHhhh
Confidence 34566789999999999988543 34444443
No 478
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=22.03 E-value=7.3e+02 Score=24.02 Aligned_cols=105 Identities=16% Similarity=0.122 Sum_probs=56.5
Q ss_pred cccHHHHHHHHh--CCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCCCCCCCcch
Q 014919 240 GNGLFLLGMARK--RKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEH 317 (416)
Q Consensus 240 G~G~~~~~lA~~--~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdpw~k~~h~ 317 (416)
|.|.....+|++ ....++++.|......+.+.+.+. . ...+..++.. .....|.|++..|++. +
T Consensus 7 GlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~---~-~~~s~~~~~~-----~~~~advVi~~vp~~~----~- 72 (299)
T PRK12490 7 GLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLGI---T-ARHSLEELVS-----KLEAPRTIWVMVPAGE----V- 72 (299)
T ss_pred cccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCC---e-ecCCHHHHHH-----hCCCCCEEEEEecCch----H-
Confidence 345555555553 235678888976544444443332 2 1233333311 1112578877766541 1
Q ss_pred hhhhhhHHHHHHHHhhccCCcEEEEE-eCcHHHHHHHHHHHHhCCCC
Q 014919 318 RWRMVQRSLVEAVSDLLVHDGKVFLQ-SDIEEVMLRMKQQFLEYGKG 363 (416)
Q Consensus 318 krRl~~~~~l~~i~r~LkpgG~l~l~-tD~~~~~~~~~~~~~~~~~~ 363 (416)
.+..++.+...|++|-.++-. |-.......+.+.+.+.+..
T Consensus 73 -----~~~v~~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~ 114 (299)
T PRK12490 73 -----TESVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIH 114 (299)
T ss_pred -----HHHHHHHHhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCe
Confidence 135566777778887655433 44455566677777777643
No 479
>PF06897 DUF1269: Protein of unknown function (DUF1269); InterPro: IPR009200 There are currently no experimental data for members of this group or their homologues. However, these proteins are predicted to contain two or more transmembrane segments.
Probab=21.99 E-value=1.4e+02 Score=24.47 Aligned_cols=40 Identities=10% Similarity=0.224 Sum_probs=28.6
Q ss_pred hHHHHHHHHhhccCCcEEEEE-eCcHHHHHHHHHHHHhCCCC
Q 014919 323 QRSLVEAVSDLLVHDGKVFLQ-SDIEEVMLRMKQQFLEYGKG 363 (416)
Q Consensus 323 ~~~~l~~i~r~LkpgG~l~l~-tD~~~~~~~~~~~~~~~~~~ 363 (416)
+..|++++.+.|+||....+. ++. ...+...+.++.++-.
T Consensus 41 ~d~~~~ev~~~L~~GssAl~~lv~~-~~~d~v~~~l~~~gg~ 81 (102)
T PF06897_consen 41 DDEFIKEVGEALKPGSSALFLLVDE-ATEDKVDAALRKFGGK 81 (102)
T ss_pred CHHHHHHHHhhcCCCceEEEEEecc-CCHHHHHHHHHhcCCE
Confidence 358999999999999765543 332 3456677788887754
No 480
>PRK08227 autoinducer 2 aldolase; Validated
Probab=21.86 E-value=60 Score=31.50 Aligned_cols=42 Identities=26% Similarity=0.369 Sum_probs=26.9
Q ss_pred CCcEEEEEcCCccchHHHHHHHHHHhcCeEEEehHHHHHHHHHcCCCCCCcccccC
Q 014919 6 EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKG 61 (416)
Q Consensus 6 ~~p~~~i~GGaKv~dki~~~~~l~~~~d~~~~gG~~a~~fl~a~g~~ig~s~~e~~ 61 (416)
..|+ .|.||.|.+| -.+|+.+-+-.+ +| |.|..+|+.+...+
T Consensus 192 ~vPV-viaGG~k~~~-~~~L~~v~~ai~----aG--------a~Gv~~GRNIfQ~~ 233 (264)
T PRK08227 192 PVPI-VIAGGKKLPE-RDALEMCYQAID----EG--------ASGVDMGRNIFQSE 233 (264)
T ss_pred CCcE-EEeCCCCCCH-HHHHHHHHHHHH----cC--------CceeeechhhhccC
Confidence 4575 5999999966 444444433332 44 57888998766654
No 481
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=21.76 E-value=3.4e+02 Score=28.37 Aligned_cols=38 Identities=16% Similarity=0.135 Sum_probs=28.6
Q ss_pred CCcEEEEEcCC-ccchHHHHHHHHHHh-cCeEEEehHHHH
Q 014919 6 EKPYAAIIGGG-NLCNKAAALHFLASR-CDGLIFVGLMSF 43 (416)
Q Consensus 6 ~~p~~~i~GGa-Kv~dki~~~~~l~~~-~d~~~~gG~~a~ 43 (416)
.+|+++|+||. |=.|--.+++.|.++ ++.+++.|--..
T Consensus 346 ~~~i~~i~Gg~~k~kd~~~l~~~l~~~~~~~v~~~g~~~~ 385 (468)
T PRK04690 346 GRRVALLVGGHDRGLDWTDFAAHMAQRAPLEIVTMGANGP 385 (468)
T ss_pred CCcEEEEEcCCCCCCCHHHHHHHHHhccCeEEEEeCCCHH
Confidence 46899999984 655778888888888 488888776443
No 482
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=21.69 E-value=7.4e+02 Score=23.96 Aligned_cols=105 Identities=21% Similarity=0.175 Sum_probs=55.0
Q ss_pred EEeccccHHHHHHHHhC--CCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCCCCCC
Q 014919 236 DIGSGNGLFLLGMARKR--KDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFN 313 (416)
Q Consensus 236 DIGCG~G~~~~~lA~~~--p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdpw~k 313 (416)
=||+ |.....||... .+.++++.|......+.+...+.. ...+..+. ....|.|++..|++-
T Consensus 6 ~IGl--G~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g~~----~~~s~~~~--------~~~aDvVi~~vp~~~-- 69 (296)
T PRK15461 6 FIGL--GQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGAT----PAASPAQA--------AAGAEFVITMLPNGD-- 69 (296)
T ss_pred EEee--CHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCc----ccCCHHHH--------HhcCCEEEEecCCHH--
Confidence 3555 45555555432 246899999765555544443321 11222222 124588887766541
Q ss_pred CcchhhhhhhHHHH---HHHHhhccCCcEEE-EEeCcHHHHHHHHHHHHhCCCCc
Q 014919 314 RPEHRWRMVQRSLV---EAVSDLLVHDGKVF-LQSDIEEVMLRMKQQFLEYGKGK 364 (416)
Q Consensus 314 ~~h~krRl~~~~~l---~~i~r~LkpgG~l~-l~tD~~~~~~~~~~~~~~~~~~~ 364 (416)
+ + +..+ +.+...+++|-.++ +.|-.....+++.+.+.+.+...
T Consensus 70 --~-----~-~~vl~~~~~i~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~~ 116 (296)
T PRK15461 70 --L-----V-RSVLFGENGVCEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFSM 116 (296)
T ss_pred --H-----H-HHHHcCcccHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcE
Confidence 0 1 1222 22344566665443 34566667777888888877653
No 483
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=21.63 E-value=2.7e+02 Score=27.57 Aligned_cols=125 Identities=15% Similarity=0.152 Sum_probs=74.1
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCCC
Q 014919 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNP 310 (416)
Q Consensus 231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpdp 310 (416)
...++|+=||.|.+...+.+.. -.-+.++|+...|.+.-+.+ .+.-.+++.|+.++..+.+ ....+|.+.-.+|=.
T Consensus 3 ~~~~idLFsG~GG~~lGf~~ag-f~~~~a~Eid~~a~~ty~~n-~~~~~~~~~di~~~~~~~~--~~~~~DvligGpPCQ 78 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAG-FEIVFANEIDPPAVATYKAN-FPHGDIILGDIKELDGEAL--RKSDVDVLIGGPPCQ 78 (328)
T ss_pred CceEEeeccCCchHHHHHHhcC-CeEEEEEecCHHHHHHHHHh-CCCCceeechHhhcChhhc--cccCCCEEEeCCCCc
Confidence 5689999999999998887764 23477889888777765433 2335677888887643322 122789887765422
Q ss_pred CCCCcc-------hhhhhhhHHHHHHHHhhccCCcEEEEEeCcH-------HHHHHHHHHHHhCCCC
Q 014919 311 DFNRPE-------HRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE-------EVMLRMKQQFLEYGKG 363 (416)
Q Consensus 311 w~k~~h-------~krRl~~~~~l~~i~r~LkpgG~l~l~tD~~-------~~~~~~~~~~~~~~~~ 363 (416)
-+...- .+..|+ -. +.++...++| -.|++. .++ ..++...+.|++.|+.
T Consensus 79 ~FS~aG~r~~~~D~R~~L~-~~-~~r~I~~~~P-~~fv~E-NV~gl~~~~~~~~~~i~~~L~~~GY~ 141 (328)
T COG0270 79 DFSIAGKRRGYDDPRGSLF-LE-FIRLIEQLRP-KFFVLE-NVKGLLSSKGQTFDEIKKELEELGYG 141 (328)
T ss_pred chhhcCcccCCcCccceee-HH-HHHHHHhhCC-CEEEEe-cCchHHhcCchHHHHHHHHHHHcCCc
Confidence 222111 111222 12 3345556678 344442 222 2556677788888874
No 484
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=21.54 E-value=5.1e+02 Score=25.92 Aligned_cols=90 Identities=17% Similarity=0.200 Sum_probs=58.2
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCe-EEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECCC
Q 014919 231 QPLVVDIGSGNGLFLLGMARKRKDLN-FLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPN 309 (416)
Q Consensus 231 ~~~vLDIGCG~G~~~~~lA~~~p~~~-~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fpd 309 (416)
+..|.=||||+=.....+--+-...+ ++|+---..+.++|++.|++ ..+..+. ...-|+|.+.-||
T Consensus 18 gK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~dGf~-----V~~v~ea--------~k~ADvim~L~PD 84 (338)
T COG0059 18 GKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDGFK-----VYTVEEA--------AKRADVVMILLPD 84 (338)
T ss_pred CCeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhcCCE-----eecHHHH--------hhcCCEEEEeCch
Confidence 57899999998766665544433333 44554223346667777754 3344443 2356889888776
Q ss_pred CCCCCcchhhhhhhHHHHH-HHHhhccCCcEEEEEe
Q 014919 310 PDFNRPEHRWRMVQRSLVE-AVSDLLVHDGKVFLQS 344 (416)
Q Consensus 310 pw~k~~h~krRl~~~~~l~-~i~r~LkpgG~l~l~t 344 (416)
-. +++..+ ++...|+.|-.|.|+.
T Consensus 85 e~-----------q~~vy~~~I~p~Lk~G~aL~FaH 109 (338)
T COG0059 85 EQ-----------QKEVYEKEIAPNLKEGAALGFAH 109 (338)
T ss_pred hh-----------HHHHHHHHhhhhhcCCceEEecc
Confidence 52 345555 8999999999999864
No 485
>KOG0564 consensus 5,10-methylenetetrahydrofolate reductase [Amino acid transport and metabolism]
Probab=21.50 E-value=2.1e+02 Score=30.30 Aligned_cols=152 Identities=19% Similarity=0.266 Sum_probs=82.2
Q ss_pred EeeeecccCCCCcccccccCccccccccccCCCCCCeEEEEeccccH----HHHHHHHhCCCCeEEEEc-----------
Q 014919 197 VWEFLKGRMLPGVSALDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGL----FLLGMARKRKDLNFLGLE----------- 261 (416)
Q Consensus 197 ~le~l~gr~lPg~~aL~~~~p~~~~~~~~f~~~~~~~vLDIGCG~G~----~~~~lA~~~p~~~~iGvD----------- 261 (416)
++||.--++.-|+.-|.+.+. .+ .....+..+||==|.|. .+..+|... -++.++|
T Consensus 20 S~EfFpPkT~~Gv~NL~~R~d---Rm----~~~g~P~FvdvTWgagG~ta~~s~~ias~~--q~~~~v~t~mHlTCtn~~ 90 (590)
T KOG0564|consen 20 SFEFFPPKTEAGVPNLYERMD---RM----SEGGPPTFVDVTWGAGGSTAELSLGIASSA--QNVCGLETCMHLTCTNMP 90 (590)
T ss_pred EEEecCcccccccccHHHHHH---HH----HhcCCCeEEEEEecCCCCcccccHHHHHHH--HHhcCccceeeeeccCcc
Confidence 577777777777766654431 11 11123778888666555 445555542 1455555
Q ss_pred --hHHHHHHHHHHhCCCcEEEEEcChh-----------------hhhhhhhccCCCceeEEEEECCCCCCCCcchhhhhh
Q 014919 262 --LVTHCRDSLQLSGITNGYFIATNAT-----------------STFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMV 322 (416)
Q Consensus 262 --~~~~a~~~a~~~~l~nv~f~~~Da~-----------------~l~~~~~~~~~~s~D~v~~~fpdpw~k~~h~krRl~ 322 (416)
++..|++++...|+.|+--+++|-. ++.+..-....+.|+.-...||..++....+.
T Consensus 91 ~~~Id~aLe~a~~~GirNILALRGDpP~g~d~~~~~e~gF~yA~DLVr~Irs~YGDyF~IgVAgYPEghpe~~~~~---- 166 (590)
T KOG0564|consen 91 KEMIDKALEQAKALGIRNILALRGDPPIGQDKWVEEEGGFRYAVDLVRYIRSKYGDYFCIGVAGYPEGHPEAPSHD---- 166 (590)
T ss_pred HHHHHHHHHHHHHhCchhhhhhcCCCCCCccccccccCCchhHHHHHHHHHHHhCCeEEEEeccCCCCCcCCcccc----
Confidence 3677899999999999999999921 11110000012345555666776655322210
Q ss_pred hHHHHHHHHhhccCCcEEEEE---eCcHHHHHHHHHHHHhCCC
Q 014919 323 QRSLVEAVSDLLVHDGKVFLQ---SDIEEVMLRMKQQFLEYGK 362 (416)
Q Consensus 323 ~~~~l~~i~r~LkpgG~l~l~---tD~~~~~~~~~~~~~~~~~ 362 (416)
...=|..+.+..-.|+-|++. .|.+.+..+ ...+++.+.
T Consensus 167 ~~~Dl~yLk~KvdaGaDFIiTQlFYd~e~flkf-v~~cR~~gi 208 (590)
T KOG0564|consen 167 YLADLPYLKEKVDAGADFIITQLFYDVETFLKF-VKDCRAAGI 208 (590)
T ss_pred hhhhhHHHHHhhcccchhhhhhhhcCHHHHHHH-HHHHHHhCC
Confidence 012234445555667766653 355554443 344566654
No 486
>cd00291 SirA_YedF_YeeD SirA, YedF, and YeeD. Two-layered alpha/beta sandwich domain. SirA (also known as UvrY, and YhhP) belongs to a family of bacterial two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=21.13 E-value=2.4e+02 Score=20.48 Aligned_cols=38 Identities=13% Similarity=-0.012 Sum_probs=29.2
Q ss_pred HHHHhhccCCcEEEEEeCcHHHHHHHHHHHHhCCCCce
Q 014919 328 EAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKL 365 (416)
Q Consensus 328 ~~i~r~LkpgG~l~l~tD~~~~~~~~~~~~~~~~~~~~ 365 (416)
.+..+-|.+|..+.+.+|+......+...+++.|+...
T Consensus 17 ~~~l~~l~~g~~l~v~~d~~~~~~~i~~~~~~~g~~~~ 54 (69)
T cd00291 17 KKALEKLKSGEVLEVLLDDPGAVEDIPAWAKETGHEVL 54 (69)
T ss_pred HHHHhcCCCCCEEEEEecCCcHHHHHHHHHHHcCCEEE
Confidence 33444578999999999988777777788888888743
No 487
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=21.08 E-value=40 Score=33.37 Aligned_cols=72 Identities=11% Similarity=0.084 Sum_probs=43.8
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHH---HHHH-HHHhCC-CcEEEEEcChhhhhhhhhccCCCceeEEE
Q 014919 230 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTH---CRDS-LQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVS 304 (416)
Q Consensus 230 ~~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~---a~~~-a~~~~l-~nv~f~~~Da~~l~~~~~~~~~~s~D~v~ 304 (416)
.+..|+|+=.|-|.|++...-......++++|.... |+++ ++.++. ...+.+.+|-+. +-++...|.|.
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~------~~~~~~AdrVn 267 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRN------PKPRLRADRVN 267 (351)
T ss_pred ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccc------cCccccchhee
Confidence 468999999999999994333335678999996433 3333 333322 123333444332 22467889887
Q ss_pred EEC
Q 014919 305 IQC 307 (416)
Q Consensus 305 ~~f 307 (416)
+..
T Consensus 268 LGL 270 (351)
T KOG1227|consen 268 LGL 270 (351)
T ss_pred ecc
Confidence 753
No 488
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=21.06 E-value=1.8e+02 Score=26.75 Aligned_cols=55 Identities=13% Similarity=0.132 Sum_probs=38.8
Q ss_pred hHHHHHHHHHHhcCeEEEehHHHHHHHHHcCCCCCCcccccCchHHHHHHHHHHhhCCCeeecceeEEEec
Q 014919 20 NKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAASDLIQFARDKHITILYPKDFWCTK 90 (416)
Q Consensus 20 dki~~~~~l~~~~d~~~~gG~~a~~fl~a~g~~ig~s~~e~~~~~~a~~~~~~~~~~~~~i~lP~D~~v~~ 90 (416)
+...-|...++-+|.+++ ..+..- +...+..+++++.|++.|++.++|.++....
T Consensus 53 ~~~~~l~~al~g~d~v~~----------~~~~~~------~~~~~~~~~li~Aa~~agVk~~v~ss~~~~~ 107 (233)
T PF05368_consen 53 DDPESLVAALKGVDAVFS----------VTPPSH------PSELEQQKNLIDAAKAAGVKHFVPSSFGADY 107 (233)
T ss_dssp T-HHHHHHHHTTCSEEEE----------ESSCSC------CCHHHHHHHHHHHHHHHT-SEEEESEESSGT
T ss_pred CCHHHHHHHHcCCceEEe----------ecCcch------hhhhhhhhhHHHhhhccccceEEEEEecccc
Confidence 345666777778888877 333211 4457889999999999999999999886543
No 489
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=21.00 E-value=76 Score=32.97 Aligned_cols=57 Identities=19% Similarity=0.210 Sum_probs=46.1
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHh----CC--CcEEEEEcChhhhh
Q 014919 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLS----GI--TNGYFIATNATSTF 289 (416)
Q Consensus 231 ~~~vLDIGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~----~l--~nv~f~~~Da~~l~ 289 (416)
+..|-|+=||-|-+.+.+++. ++.+++-|+...+.+..+.+ .+ .++.....|+..++
T Consensus 250 gevv~D~FaGvGPfa~Pa~kK--~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~Fl 312 (495)
T KOG2078|consen 250 GEVVCDVFAGVGPFALPAAKK--GCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDFL 312 (495)
T ss_pred cchhhhhhcCcCccccchhhc--CcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHHh
Confidence 788999999999999999987 59999999877666665432 22 35888999998876
No 490
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=20.88 E-value=3.2e+02 Score=21.79 Aligned_cols=51 Identities=14% Similarity=0.148 Sum_probs=30.7
Q ss_pred EeccccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEE
Q 014919 237 IGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 306 (416)
Q Consensus 237 IGCG~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~ 306 (416)
+-||+|..+..++.. +..+.++++|+ ++.+.+++..++ +.. ...+|.|+..
T Consensus 7 vvCgsG~~TS~m~~~-------------ki~~~l~~~gi-~~~v~~~~~~e~-~~~----~~~~D~iv~t 57 (94)
T PRK10310 7 VACGGAVATSTMAAE-------------EIKELCQSHNI-PVELIQCRVNEI-ETY----MDGVHLICTT 57 (94)
T ss_pred EECCCchhHHHHHHH-------------HHHHHHHHCCC-eEEEEEecHHHH-hhh----cCCCCEEEEC
Confidence 679999988877532 12233445666 377777777765 211 2457877543
No 491
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=20.67 E-value=7.1e+02 Score=23.35 Aligned_cols=93 Identities=15% Similarity=0.074 Sum_probs=53.6
Q ss_pred CCeEEEEec--cccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECC
Q 014919 231 QPLVVDIGS--GNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP 308 (416)
Q Consensus 231 ~~~vLDIGC--G~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fp 308 (416)
+..+|=.|+ +.|..++.+|+.. +.+++.+.....-.+.+...+.+.+-....+.. ...... ...+|.++-...
T Consensus 143 g~~vlV~ga~g~~g~~~~~~a~~~-g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~~i~~~-~~~~d~vl~~~~ 217 (320)
T cd08243 143 GDTLLIRGGTSSVGLAALKLAKAL-GATVTATTRSPERAALLKELGADEVVIDDGAIA---EQLRAA-PGGFDKVLELVG 217 (320)
T ss_pred CCEEEEEcCCChHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhcCCcEEEecCccHH---HHHHHh-CCCceEEEECCC
Confidence 567777775 5778888888875 577888875544344444455543311111111 111111 345887753211
Q ss_pred CCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919 309 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 343 (416)
Q Consensus 309 dpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~ 343 (416)
...+....+.|+++|++...
T Consensus 218 ---------------~~~~~~~~~~l~~~g~~v~~ 237 (320)
T cd08243 218 ---------------TATLKDSLRHLRPGGIVCMT 237 (320)
T ss_pred ---------------hHHHHHHHHHhccCCEEEEE
Confidence 14567778999999998754
No 492
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=20.62 E-value=3.5e+02 Score=26.06 Aligned_cols=92 Identities=9% Similarity=0.126 Sum_probs=49.2
Q ss_pred CeEEE-Eec-cccHHHHHHHHhCCCCeEEEEchHHHHHHHHHHhCCCcEEEEEc---ChhhhhhhhhccCCCceeEEEEE
Q 014919 232 PLVVD-IGS-GNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIAT---NATSTFRSIVASYPGKLILVSIQ 306 (416)
Q Consensus 232 ~~vLD-IGC-G~G~~~~~lA~~~p~~~~iGvD~~~~a~~~a~~~~l~nv~f~~~---Da~~l~~~~~~~~~~s~D~v~~~ 306 (416)
..++- -|+ +.|..++.+|+.. +.++++++.+..-.+.+++.+.+. ++.. +..+-+.+.. ....+|.++-.
T Consensus 145 ~vlv~~~g~g~vG~~a~q~a~~~-G~~vi~~~~~~~~~~~~~~~g~~~--~i~~~~~~~~~~v~~~~--~~~~~d~vid~ 219 (324)
T cd08291 145 KAVVHTAAASALGRMLVRLCKAD-GIKVINIVRRKEQVDLLKKIGAEY--VLNSSDPDFLEDLKELI--AKLNATIFFDA 219 (324)
T ss_pred cEEEEccCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHcCCcE--EEECCCccHHHHHHHHh--CCCCCcEEEEC
Confidence 44443 244 4566777788764 678999887655455555555442 2222 2211112222 23357877532
Q ss_pred CCCCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919 307 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 343 (416)
Q Consensus 307 fpdpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~ 343 (416)
... .......+.|+++|++...
T Consensus 220 ~g~---------------~~~~~~~~~l~~~G~~v~~ 241 (324)
T cd08291 220 VGG---------------GLTGQILLAMPYGSTLYVY 241 (324)
T ss_pred CCc---------------HHHHHHHHhhCCCCEEEEE
Confidence 110 2234557788999997764
No 493
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=20.48 E-value=3.6e+02 Score=27.88 Aligned_cols=42 Identities=14% Similarity=0.059 Sum_probs=32.6
Q ss_pred CcEEEEEcCCccchHHHHHHHHHHhcCeEEEehHHHHHHHHH
Q 014919 7 KPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHA 48 (416)
Q Consensus 7 ~p~~~i~GGaKv~dki~~~~~l~~~~d~~~~gG~~a~~fl~a 48 (416)
++++.|+||-...+=++.|..++++++.+++.|.=+..+...
T Consensus 354 ~~i~~I~G~~d~~~~~~~L~~~~~~v~~v~~~g~~~~~l~~~ 395 (460)
T PRK01390 354 DRIYWIAGGKPKEGGIESLAPFFPRIAKAYLIGEAAEAFAAT 395 (460)
T ss_pred CCeEEEecCccCCCCHHHHHHHHHhhCEEEEECCCHHHHHHH
Confidence 478899999777777888888888899988887666555543
No 494
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=20.29 E-value=5.9e+02 Score=25.26 Aligned_cols=92 Identities=12% Similarity=0.154 Sum_probs=49.2
Q ss_pred CCeEEEEeccc-cHHHHHHHHhCCCCeEEEEchHHHH-HHHHHHhCCCcEEEEEcChhhhhhhhhccCCCceeEEEEECC
Q 014919 231 QPLVVDIGSGN-GLFLLGMARKRKDLNFLGLELVTHC-RDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP 308 (416)
Q Consensus 231 ~~~vLDIGCG~-G~~~~~lA~~~p~~~~iGvD~~~~a-~~~a~~~~l~nv~f~~~Da~~l~~~~~~~~~~s~D~v~~~fp 308 (416)
+..||=.|||. |..++.+|+.. +.++++++.+..- .+.+++.|.+.+ +-..+...+ ... .+.+|.++-...
T Consensus 184 g~~VlV~G~G~vG~~avq~Ak~~-Ga~vi~~~~~~~~~~~~~~~~Ga~~v-i~~~~~~~~-~~~----~~~~D~vid~~g 256 (360)
T PLN02586 184 GKHLGVAGLGGLGHVAVKIGKAF-GLKVTVISSSSNKEDEAINRLGADSF-LVSTDPEKM-KAA----IGTMDYIIDTVS 256 (360)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCcchhhhHHHhCCCcEE-EcCCCHHHH-Hhh----cCCCCEEEECCC
Confidence 45666688853 55667777775 5678888754322 222334454322 111111122 111 124777753211
Q ss_pred CCCCCCcchhhhhhhHHHHHHHHhhccCCcEEEEE
Q 014919 309 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 343 (416)
Q Consensus 309 dpw~k~~h~krRl~~~~~l~~i~r~LkpgG~l~l~ 343 (416)
. +..++...+.|+++|++...
T Consensus 257 ~--------------~~~~~~~~~~l~~~G~iv~v 277 (360)
T PLN02586 257 A--------------VHALGPLLGLLKVNGKLITL 277 (360)
T ss_pred C--------------HHHHHHHHHHhcCCcEEEEe
Confidence 1 24567788899999998764
Done!