RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 014919
(416 letters)
>gnl|CDD|178602 PLN03034, PLN03034, phosphoglycerate kinase; Provisional.
Length = 481
Score = 119 bits (300), Expect = 1e-29
Identities = 70/214 (32%), Positives = 109/214 (50%), Gaps = 3/214 (1%)
Query: 6 EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
++P+AAI+GG + +K + L +CD L+ G M F A GL V LVE+ +
Sbjct: 266 KRPFAAIVGGSKVSSKIGVIESLLEKCDILLLGGGMIFTFYKAQGLSVGSSLVEEDKLEL 325
Query: 66 ASDLIQFARDKHITILYPKDFWCTKIHHPN-QVEIFPSHGIPDGWEPVDIGPRSVEEITS 124
A+ L+ A+ K +++L P D P+ +I P+ IPDGW +DIGP SV+
Sbjct: 326 ATSLLAKAKAKGVSLLLPTDVVIADKFAPDANSKIVPASAIPDGWMGLDIGPDSVKTFNE 385
Query: 125 TITKCKKVIWVGPVK-FRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVSS 183
+ + VIW GP+ F F +++ G + L ++S + G + A+ KV
Sbjct: 386 ALDTTQTVIWNGPMGVFEF-EKFAVGTEAVAKKLAELSGKGVTTIIGGGDSVAAVEKVGV 444
Query: 184 SIFGLNMVESGSAVWEFLKGRMLPGVSALDRAFP 217
+ ++ G A E L+G+ LPGV ALD A P
Sbjct: 445 ADVMSHISTGGGASLELLEGKELPGVVALDEATP 478
>gnl|CDD|238195 cd00318, Phosphoglycerate_kinase, Phosphoglycerate kinase (PGK) is
a monomeric enzyme which catalyzes the transfer of the
high-energy phosphate group of 1,3-bisphosphoglycerate
to ADP, forming ATP and 3-phosphoglycerate. This
reaction represents the first of the two substrate-level
phosphorylation events in the glycolytic pathway.
Substrate-level phosphorylation is defined as production
of ATP by a process, which is catalyzed by
water-soluble enzymes in the cytosol; not involving
membranes and ion gradients. .
Length = 397
Score = 110 bits (278), Expect = 6e-27
Identities = 62/215 (28%), Positives = 106/215 (49%), Gaps = 11/215 (5%)
Query: 6 EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
E+P+ AI+GG + +K + L + D LI G M+F + A G+ + L E+ +
Sbjct: 188 ERPFVAILGGAKVSDKIQVIENLLDKVDYLIIGGGMAFTFLKAQGMDIGKSLFEEDGIEL 247
Query: 66 ASDLIQFARDKHITILYPKDFWC-TKIHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITS 124
A L++ A+ K + I+ P D K ++ GIPDGW +DIGP+++E
Sbjct: 248 AKSLLEKAKAKGVKIVLPVDVVVADKFKADANTKVVTDDGIPDGWMGLDIGPKTIELFAE 307
Query: 125 TITKCKKVIWVGPVK-FRFSSQYSNGASKLTGMLCKVSQGTCNVTVIG---SMACKAIAK 180
I K K ++W GP+ F F ++ G + + ++ ++IG + A
Sbjct: 308 VIRKAKTIVWNGPMGVFEF-PAFAKGTKAIADAIAAATKAGA-FSIIGGGDTAAAAEKFG 365
Query: 181 VSSSIFGLNMVES-GSAVWEFLKGRMLPGVSALDR 214
++ I + V + G A E L+G+ LPGV+AL+
Sbjct: 366 LADKI---SHVSTGGGASLELLEGKELPGVAALEE 397
>gnl|CDD|165923 PLN02282, PLN02282, phosphoglycerate kinase.
Length = 401
Score = 108 bits (272), Expect = 3e-26
Identities = 68/212 (32%), Positives = 107/212 (50%), Gaps = 3/212 (1%)
Query: 6 EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
+KP+AAI+GG + K + L + D L+ G M F A G V LVE+ D
Sbjct: 191 KKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFYKAQGYSVGSSLVEEDKLDL 250
Query: 66 ASDLIQFARDKHITILYPKDFWCTKIHHPN-QVEIFPSHGIPDGWEPVDIGPRSVEEITS 124
A+ LI+ A+ K +++L P D P+ ++ P+ IPDGW +DIGP S++ +
Sbjct: 251 ATSLIEKAKAKGVSLLLPTDVVIADKFAPDANSKVVPASAIPDGWMGLDIGPDSIKTFSE 310
Query: 125 TITKCKKVIWVGPVK-FRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVSS 183
+ K +IW GP+ F F +++ G + L ++S + G + A+ KV
Sbjct: 311 ALDTTKTIIWNGPMGVFEF-EKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGL 369
Query: 184 SIFGLNMVESGSAVWEFLKGRMLPGVSALDRA 215
+ ++ G A E L+G+ LPGV ALD A
Sbjct: 370 ADKMSHISTGGGASLELLEGKPLPGVLALDDA 401
>gnl|CDD|234613 PRK00073, pgk, phosphoglycerate kinase; Provisional.
Length = 389
Score = 103 bits (259), Expect = 2e-24
Identities = 65/217 (29%), Positives = 104/217 (47%), Gaps = 21/217 (9%)
Query: 6 EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
E+P+ AI+GG + +K L L + D LI G M+ + A G V LVE+ D
Sbjct: 184 ERPFVAILGGAKVSDKIGVLENLLEKVDKLIIGGGMANTFLKAQGYNVGKSLVEEDLIDT 243
Query: 66 ASDLIQFARDKHITILYPKDFWCTKIHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITST 125
A +L++ A++K + I P D K + + IPD W +DIGP+++E
Sbjct: 244 AKELLEKAKEKGVKIPLPVDVVVAKEFSDAEATVVSVDEIPDDWMILDIGPKTIELFAEI 303
Query: 126 ITKCKKVIWVGPVK-FRFSSQYSNGASKLTGMLCK-VSQGTCNVTVIG---SMACKAIAK 180
I K ++W GP+ F F ++ G T + K +++ T ++IG + A
Sbjct: 304 IKDAKTIVWNGPMGVFEF-ENFAKG----TKAVAKAIAESTA-FSIIGGGDTAAAVEKLG 357
Query: 181 VSSSIF----GLNMVESGSAVWEFLKGRMLPGVSALD 213
++ G G A EFL+G+ LPGV+AL+
Sbjct: 358 LADKFSHISTG------GGASLEFLEGKELPGVAALE 388
>gnl|CDD|215761 pfam00162, PGK, Phosphoglycerate kinase.
Length = 383
Score = 98.3 bits (246), Expect = 1e-22
Identities = 43/146 (29%), Positives = 75/146 (51%), Gaps = 3/146 (2%)
Query: 6 EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
E+P+ AI+GG + +K + L + D L+ G M+ + A G + LVE+ +
Sbjct: 187 ERPFVAILGGAKVSDKIKVIENLLDKVDKLLIGGGMANTFLKAQGYNIGKSLVEEDLIET 246
Query: 66 ASDLIQFARDKHITILYPKDFWCTKIHHPN-QVEIFPSHGIPDGWEPVDIGPRSVEEITS 124
A +L++ A++K + I+ P D + + ++ IPDGW +DIGP+++E
Sbjct: 247 AKELLEKAKEKGVKIVLPVDVVVADEFSADAETKVVDVDEIPDGWMGLDIGPKTIELFAE 306
Query: 125 TITKCKKVIWVGPVK-FRFSSQYSNG 149
I K V+W GP+ F F ++ G
Sbjct: 307 VIKDAKTVVWNGPMGVFEF-ENFAKG 331
>gnl|CDD|223204 COG0126, Pgk, 3-phosphoglycerate kinase [Carbohydrate transport and
metabolism].
Length = 395
Score = 96.8 bits (242), Expect = 4e-22
Identities = 68/222 (30%), Positives = 103/222 (46%), Gaps = 26/222 (11%)
Query: 6 EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
E+P+ AI+GG + +K + L + D LI G M+ + A G V LVE D
Sbjct: 190 ERPFVAILGGAKVSDKIGVIENLLKKADKLIIGGGMANTFLKAQGYDVGKSLVEFDLIDG 249
Query: 66 ASDLIQFARDKHITILYPKDFWCTKIHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITST 125
A +L++ A+DK I+ P D K IPD +DIGP+++E
Sbjct: 250 AKELLEKAKDK---IVLPVDVVVAK-EFSRDAPATVKLEIPDDLMILDIGPKTIELFAEI 305
Query: 126 ITKCKKVIWVGPVK-FRFSSQYSNGASKLTGMLCK-VSQGTCNVTVIG---SMACKAIAK 180
I K ++W GP+ F F ++ G T + K +++ + ++IG + A AI K
Sbjct: 306 IKGAKTIVWNGPMGVFEF-ENFAKG----TEEVAKAIAKSSGAFSIIGGGDTAA--AIDK 358
Query: 181 VSSSIFGLNMVES-----GSAVWEFLKGRMLPGVSALDRAFP 217
GL S G A EFL+G+ LPGV AL+ +
Sbjct: 359 -----LGLADKISHISTGGGASLEFLEGKELPGVEALEESAK 395
>gnl|CDD|237572 PRK13962, PRK13962, bifunctional phosphoglycerate
kinase/triosephosphate isomerase; Provisional.
Length = 645
Score = 95.9 bits (239), Expect = 2e-21
Identities = 65/218 (29%), Positives = 106/218 (48%), Gaps = 24/218 (11%)
Query: 6 EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
++P+ AI+GG + +K + L + D L+ G M++ + A G V LVE+ D
Sbjct: 187 QRPFVAILGGAKVSDKIGVIENLLEKVDKLLIGGGMAYTFLKAKGYEVGKSLVEEDKLDL 246
Query: 66 ASDLIQFARDKHITILYPKDFWCTKIHHPNQVEI--FPSHGIPDGWEPVDIGPRSVEEIT 123
A +L+ A +K + +L P D K N E PS IP+ W +DIGP ++E
Sbjct: 247 AKELLAKAEEKGVKLLLPVDSVVAK-EFKNDAEHKVVPSDAIPEDWMGLDIGPETIELFA 305
Query: 124 STITKCKKVIWVGPVK-FRFSSQYSNGASKLTGMLCKVSQGTCNVTVIG---SMACKAIA 179
I K ++W GP+ F F + ++ G + V++ +T+IG S A A+
Sbjct: 306 KKIADAKTIVWNGPMGVFEFDN-FAEGTRA---VAEAVAESGA-ITIIGGGDSAA--AVE 358
Query: 180 KVSSSIFGL-----NMVESGSAVWEFLKGRMLPGVSAL 212
K G ++ G A EFL+G++LPG++ L
Sbjct: 359 K-----LGFADKMSHISTGGGASLEFLEGKVLPGIACL 391
>gnl|CDD|173310 PTZ00005, PTZ00005, phosphoglycerate kinase; Provisional.
Length = 417
Score = 94.8 bits (236), Expect = 3e-21
Identities = 62/218 (28%), Positives = 106/218 (48%), Gaps = 19/218 (8%)
Query: 6 EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHAL-GLPVPPELVEKGAND 64
++P+ AI+GG + +K + L + D +I G M+F L +P+ L ++
Sbjct: 205 QRPFLAILGGAKVADKIQLIKNLLDKVDEMIIGGGMAFTFKKVLDNMPIGKSLFDEEGAK 264
Query: 65 AASDLIQFARDKHITILYPKDFWC-TKIHHPNQVEIFP-SHGIPDGWEPVDIGPRSVEEI 122
++++ A++K++ I P DF C K + ++ GIPDGW +D GP+S+EE
Sbjct: 265 IVKEIMEKAKEKNVKIHLPVDFVCADKFDNNANTKVVTDKEGIPDGWMGLDAGPKSIEEF 324
Query: 123 TSTITKCKKVIWVGPV-KFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIG-----SMA-- 174
I + K ++W GP F ++ G+ + + K ++ +T++G S+
Sbjct: 325 AEAILRAKTIVWNGPQGVFEM-PNFAKGSIAMLDAVVKATEKGA-ITIVGGGDTASLVEK 382
Query: 175 CKAIAKVSSSIFGLNMVESGSAVWEFLKGRMLPGVSAL 212
A KVS G G A E L+G+ LPGV AL
Sbjct: 383 TGAANKVSHVSTG------GGASLELLEGKELPGVVAL 414
>gnl|CDD|234649 PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed.
Length = 202
Score = 86.8 bits (216), Expect = 7e-20
Identities = 38/154 (24%), Positives = 68/154 (44%), Gaps = 7/154 (4%)
Query: 212 LDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLE----LVTHCR 267
R P +DW+ + + A P+ ++IG G G FL+ MA+ D+NF+G+E V
Sbjct: 23 WPRLSPAPLDWAELFGNDA-PIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKAL 81
Query: 268 DSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLV 327
++ G+TN + +A + G L + + P+P + H+ R+VQ +
Sbjct: 82 KKIEEEGLTNLRLLCGDAVEVLLDMFP--DGSLDRIYLNFPDPWPKKRHHKRRLVQPEFL 139
Query: 328 EAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYG 361
+ L G++ +D E M + G
Sbjct: 140 ALYARKLKPGGEIHFATDWEGYAEYMLEVLSAEG 173
>gnl|CDD|217012 pfam02390, Methyltransf_4, Putative methyltransferase. This is a
family of putative methyltransferases. The aligned
region contains the GXGXG S-AdoMet binding site
suggesting a putative methyltransferase activity.
Length = 198
Score = 86.6 bits (215), Expect = 8e-20
Identities = 51/202 (25%), Positives = 92/202 (45%), Gaps = 21/202 (10%)
Query: 218 FDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLE----LVTHCRDSL-QL 272
F +DW A + + QPL ++IG G G FL+ MA+K D F+G+E V + L
Sbjct: 9 FTLDWQALFGNE-QPLFLEIGCGMGDFLVAMAKKNPDKLFIGIEIRVPGVDKALKKIIAL 67
Query: 273 SGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSD 332
G+ N + +A ++ G L + I P+P + H+ R++Q ++ +
Sbjct: 68 RGLQNLRILCGDAMKLLPNLFP--DGSLQKIFINFPDPWPKKRHHKRRLLQPEFLKEYAR 125
Query: 333 LLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGEN---SFGV 389
+L G + L +D+EE M + E+ + +L + L E+ +
Sbjct: 126 VLKPGGVLHLATDVEEYFEWMLEHLSEHPLFERIL----------ESTDLNEDPITDLRI 175
Query: 390 RSDWEQHVIDRGAPMYRLMLSK 411
+++EQ V G P++ L+ K
Sbjct: 176 STEYEQKVQRLGGPIFELIFIK 197
>gnl|CDD|223298 COG0220, COG0220, Predicted S-adenosylmethionine-dependent
methyltransferase [General function prediction only].
Length = 227
Score = 82.0 bits (203), Expect = 6e-18
Identities = 49/202 (24%), Positives = 80/202 (39%), Gaps = 19/202 (9%)
Query: 220 IDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL----VTHCRDSLQLSGI 275
DWSA + + P+V++IG G G FL+ MA+K + NFLG+E+ V ++ G+
Sbjct: 38 GDWSALFGNNNAPIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGL 97
Query: 276 TNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLV 335
N + +A ++ G L + I P+P + H+ R+ Q ++ + L
Sbjct: 98 KNLRLLCGDAVEVLDYLIP--DGSLDKIYINFPDPWPKKRHHKRRLTQPEFLKLYARKLK 155
Query: 336 HDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDE---CDTKTNQGGWLGENSFGVRSD 392
G + +D EE M + LE+ +D N E F
Sbjct: 156 PGGVLHFATDNEEYFEWMMLEVLEHPPFLKFESEDLHYNLPPPDNNPVTEYEQKF----- 210
Query: 393 WEQHVIDRGAPMYRLMLSKPSC 414
G P+Y L K
Sbjct: 211 -----RRLGHPVYDLEFIKKKG 227
>gnl|CDD|161703 TIGR00091, TIGR00091, tRNA (guanine-N(7)-)-methyltransferase. This
predicted S-adenosylmethionine-dependent
methyltransferase is found in a single copy in most
Bacteria. It is also found, with a short amino-terminal
extension in eukaryotes. Its function is unknown. In E.
coli, this protein flanks the DNA repair protein MutY,
also called micA [Protein synthesis, tRNA and rRNA base
modification].
Length = 194
Score = 72.8 bits (179), Expect = 6e-15
Identities = 41/198 (20%), Positives = 81/198 (40%), Gaps = 20/198 (10%)
Query: 221 DWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL----VTHCRDSLQLSGIT 276
D++ + PL ++IG G G FL+ MA++ D NFLG+E+ V + G+
Sbjct: 8 DFATVF-GNKAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLK 66
Query: 277 NGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVH 336
N + + +A G L V + P+P + ++ R+ Q ++ +++L
Sbjct: 67 NLHVLCGDANELLDKFFPD--GSLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKK 124
Query: 337 DGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENSFGVR---SDW 393
G + ++D E + M + E T++ L + +++
Sbjct: 125 GGVIHFKTDNEPLFEDMLKVLSEND----------LFENTSKSTDLNNSPLSRPRNMTEY 174
Query: 394 EQHVIDRGAPMYRLMLSK 411
EQ G P++ L +
Sbjct: 175 EQRFERLGHPVFDLCFER 192
>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain. Protein in
this family function as methyltransferases.
Length = 104
Score = 34.2 bits (79), Expect = 0.023
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 234 VVDIGSGNGLFLLGMARKRKDLNFLGLEL 262
V+DIG G G + +AR G++L
Sbjct: 5 VLDIGCGTGSLAIELARLFPGARVTGVDL 33
>gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain. This family
contains methyltransferase domains.
Length = 117
Score = 34.3 bits (79), Expect = 0.025
Identities = 28/118 (23%), Positives = 44/118 (37%), Gaps = 13/118 (11%)
Query: 232 PLVVDIGSGNGLFLLGMARKRKDLNFLGLEL----VTHCRDSLQLSGITNGYFIATNATS 287
V+D G+G+G FLL AR D +G+EL R L L+G+ +
Sbjct: 2 DRVLDPGAGSGAFLLAAARAGPDARVVGVELDPEAAALARRRLALAGLAPRVRV---VVG 58
Query: 288 TFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRS---LVEAVSDLLVHDGKVFL 342
R ++ G LV NP + + + + A LL G + +
Sbjct: 59 DARELLELPDGSFDLV---LGNPPYGPRAGDPKDNRDLYDRFLAAALRLLKPGGVLVV 113
>gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain. This family
appears to be a methyltransferase domain.
Length = 97
Score = 29.6 bits (67), Expect = 0.94
Identities = 18/109 (16%), Positives = 39/109 (35%), Gaps = 16/109 (14%)
Query: 234 VVDIGSGNGLFLLGMARKRKDLNFLGLEL----VTHCRDSLQLSGITNGYFIATNATSTF 289
++D+G G G +L + + G+++ + ++ L+ G + +A
Sbjct: 1 ILDLGCGTG-RVLRALARAGPSSVTGVDISKEALELAKERLRDKGPKVRFVVA-----DA 54
Query: 290 RSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDG 338
R + G LV ++ R+L+ + LL G
Sbjct: 55 RDLPFEE-GSFDLVIC-----AGLSLDYLSPKQLRALLREAARLLRPGG 97
>gnl|CDD|203189 pfam05175, MTS, Methyltransferase small domain. This domain is
found in ribosomal RNA small subunit methyltransferase C
as well as other methyltransferases .
Length = 170
Score = 30.2 bits (69), Expect = 1.0
Identities = 32/151 (21%), Positives = 58/151 (38%), Gaps = 31/151 (20%)
Query: 200 FLKGRMLPGVSALDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRK------ 253
F GR+ G L P + V+D+G G G+ +A++
Sbjct: 11 FSHGRLDIGSRLLLSHLPKPLGGK----------VLDLGCGYGVLGAALAKRSPDLEVTM 60
Query: 254 -DLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKL-ILVSIQCPNPD 311
D+N LE R +L +G+ NG ++ S PGK +++S NP
Sbjct: 61 VDINARALES---ARANLAANGLENGEVFWSDLYSAVE------PGKFDLIIS----NPP 107
Query: 312 FNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 342
F+ + V + + + L G++++
Sbjct: 108 FHAGKATDYDVAQRFIAGAARHLKPGGELWI 138
>gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain. This family
appears to be have methyltransferase activity.
Length = 151
Score = 29.7 bits (67), Expect = 1.6
Identities = 13/59 (22%), Positives = 24/59 (40%), Gaps = 5/59 (8%)
Query: 234 VVDIGSGNGLFLLGMARK-RKDLNFLGL----ELVTHCRDSLQLSGITNGYFIATNATS 287
V+D+G G G +A K +G+ E + +++ + G N FI +
Sbjct: 7 VLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKENAKKLGYENVEFIQGDIEE 65
>gnl|CDD|226608 COG4123, COG4123, Predicted O-methyltransferase [General function
prediction only].
Length = 248
Score = 29.9 bits (68), Expect = 1.9
Identities = 9/29 (31%), Positives = 20/29 (68%)
Query: 234 VVDIGSGNGLFLLGMARKRKDLNFLGLEL 262
++D+G+GNG L +A++ + +G+E+
Sbjct: 48 ILDLGAGNGALGLLLAQRTEKAKIVGVEI 76
>gnl|CDD|233713 TIGR02081, metW, methionine biosynthesis protein MetW. This
protein is found alongside MetX, of the enzyme that
acylates homoserine as a first step toward methionine
biosynthesis, in many species. It appears to act in
methionine biosynthesis but is not fully characterized
[Amino acid biosynthesis, Aspartate family].
Length = 194
Score = 29.6 bits (67), Expect = 2.4
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 229 PAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHC 266
P V+D+G G+G LL + R K + G+E+
Sbjct: 12 PPGSRVLDLGCGDGE-LLALLRDEKQVRGYGIEIDQDG 48
>gnl|CDD|239235 cd02907, Macro_Af1521_BAL_like, Macro domain, Af1521- and BAL-like
family. The macro domain is a high-affinity ADP-ribose
binding module found in a variety of proteins as a
stand-alone domain or in combination with other domains
like in histone macroH2A and some PARPs (poly ADP-ribose
polymerases). Some macro domains recognize poly
ADP-ribose as a ligand. Previously identified as an
Appr-1"-p (ADP-ribose-1"-monophosphate) processing
activity, the macro domain may play roles in distinct
ADP-ribose pathways, such as the ADP-ribosylation of
proteins, an important post-translational modification
which occurs in DNA repair, transcription, chromatin
biology, and long-term memory formation, among other
processes. The macro domains in this family show
similarity to Af1521, a protein from Archaeoglobus
fulgidus containing a stand-alone macro domain. Af1521
binds ADP-ribose and exhibits phosphatase activity
toward Appr-1"-p. Also included in this family are the
N-terminal (or first) macro domains of BAL (B-aggressive
lymphoma) proteins which contain multiple macro domains.
Most BAL proteins also contain a C-terminal PARP active
site and are also named as PARPs. Human BAL1 (or
PARP-9) was originally identified as a risk-related gene
in diffuse large B-cell lymphoma that promotes malignant
B-cell migration. Some BAL family proteins exhibit PARP
activity. Poly (ADP-ribosyl)ation is an immediate
DNA-damage-dependent post-translational modification of
histones and other nuclear proteins. BAL proteins may
also function as transcription repressors.
Length = 175
Score = 29.2 bits (66), Expect = 2.5
Identities = 33/107 (30%), Positives = 41/107 (38%), Gaps = 30/107 (28%)
Query: 115 GPRSVEEITSTIT---KCKKVIW-VGPVKFRFSSQYS-NGASKL----TGMLCKVSQGTC 165
GP E+ T CK VI VGP R+S + KL L K
Sbjct: 57 GPVPTGEVVVTSAGKLPCKYVIHAVGP---RWSGGEAEECVEKLKKAILNSLRKAE--EL 111
Query: 166 NVTVIGSMACKAIAKVSSSIFG--LN-----MVESGSAVWEFLKGRM 205
+ I AI +SS IFG L +VE AV EFL+ +
Sbjct: 112 GLRSI------AIPAISSGIFGFPLERCVETIVE---AVKEFLETKG 149
>gnl|CDD|241467 cd13313, PH_NF1, Neurofibromin-1 Pleckstrin homology-like domain.
Neurofibromin (NF1) contains a N-terminal RasGAP domain,
followed by a Sec14-like domain, and a PH domain.
Surprisingly, in neurofibromin the PH domain alone is
not sufficient for phospholipid binding and instead
requires the presence of the Sec-14 domain. The Sec-14
domain has been shown to bind
1-(3-sn-phosphatidyl)-sn-glycerol (PtdGro),
(3-sn-phosphatidyl)-ethanolamine (PtdEtn) and -choline
(PtdCho) and to a minor extent to
(3-sn-phosphatidyl)-l-serine (PtdSer) and
1-(3-sn-phosphatidyl)-d-myo-inositol (PtdIns).
Neurofibromatosis type 1 (also known as von
Recklinghausen neurofibromatosis or NF1) is a genetic
disorder caused by alterations in the tumor suppressor
gene NF1. Hallmark symptoms include neural crest derived
tumors, pigmentation anomalies, bone deformations, and
learning disabilities. Mutations of the tumour
suppressor gene NF1 are responsible for disease
pathogenesis, with 90% of the alterations being nonsense
codons. PH domains have diverse functions, but in
general are involved in targeting proteins to the
appropriate cellular location or in the interaction with
a binding partner. They share little sequence
conservation, but all have a common fold, which is
electrostatically polarized. Less than 10% of PH domains
bind phosphoinositide phosphates (PIPs) with high
affinity and specificity. PH domains are distinguished
from other PIP-binding domains by their specific
high-affinity binding to PIPs with two vicinal phosphate
groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3
which results in targeting some PH domain proteins to
the plasma membrane. A few display strong specificity in
lipid binding. Any specificity is usually determined by
loop regions or insertions in the N-terminus of the
domain, which are not conserved across all PH domains.
PH domains are found in cellular signaling proteins such
as serine/threonine kinase, tyrosine kinases, regulators
of G-proteins, endocytotic GTPases, adaptors, as well as
cytoskeletal associated molecules and in lipid
associated enzymes.
Length = 110
Score = 27.8 bits (62), Expect = 4.5
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 6/57 (10%)
Query: 321 MVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQF---LEYGKGKLVLVQDECDT 374
+++ V S LL ++ S+IEEV L QF + G L + +CD
Sbjct: 39 SAEKTKVLGHSVLL---NDIYYASEIEEVCLVDDNQFTLTIANEGGPLTFMHADCDK 92
>gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain. Members of
this family are SAM dependent methyltransferases.
Length = 98
Score = 27.3 bits (61), Expect = 5.4
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 235 VDIGSGNGLFLLGMARKRKDLNFLGLEL 262
+DIG G G L + L + G+++
Sbjct: 1 LDIGCGTGTLLRALLEALPGLEYTGVDI 28
>gnl|CDD|237615 PRK14121, PRK14121, tRNA (guanine-N(7)-)-methyltransferase;
Provisional.
Length = 390
Score = 28.8 bits (65), Expect = 6.0
Identities = 31/139 (22%), Positives = 62/139 (44%), Gaps = 9/139 (6%)
Query: 231 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVT----HCRDSLQLSGITNGYFIATNAT 286
+ ++++IG G+G LL A+ + F+G+E+ T ++L + N I +A
Sbjct: 123 EKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDA- 181
Query: 287 STFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI 346
++ S + I V P +++ HR R++ + +L G + L++D
Sbjct: 182 RLLLELLPSNSVEKIFVHFPVP---WDKKPHR-RVISEDFLNEALRVLKPGGTLELRTDS 237
Query: 347 EEVMLRMKQQFLEYGKGKL 365
E + FL+ K K+
Sbjct: 238 ELYFEFSLELFLKLPKAKI 256
>gnl|CDD|237872 PRK14968, PRK14968, putative methyltransferase; Provisional.
Length = 188
Score = 28.3 bits (64), Expect = 6.1
Identities = 33/158 (20%), Positives = 59/158 (37%), Gaps = 47/158 (29%)
Query: 234 VVDIGSGNGLFLLGMARKRK-----DLNFLGLELVTHCRDSLQLSGITNGY--FIATNAT 286
V+++G+G+G+ + A+ K D+N +E + + +L+ I N I ++
Sbjct: 27 VLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECA---KCNAKLNNIRNNGVEVIRSDLF 83
Query: 287 STFRSIVASYPGKLILVSIQCPNPDFNRP------EHRW--------------RMVQRSL 326
FR +IL FN P E W R V
Sbjct: 84 EPFR----GDKFDVIL---------FNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRF 130
Query: 327 VEAVSDLLVHDGKVF-LQS---DIEEVMLRMKQQFLEY 360
++ V L G++ LQS +EV+ +++ E
Sbjct: 131 LDEVGRYLKPGGRILLLQSSLTGEDEVLEYLEKLGFEA 168
>gnl|CDD|220990 pfam11124, Pho86, Inorganic phosphate transporter Pho86. Pho86p is
an ER protein which is produced in response to phosphate
starvation. It is essential for growth when phosphate
levels are limiting. Pho86p is also involved in the
regulation of Pho84p, a high-affinity phosphate
transporter which is localised to the endoplasmic
reticulum (ER) in low phosphate medium. When the level
of phosphate increases Pho84p is transported to the
vacuole. Pho86p is required for packaging of Pho84p in
to COPII vesicles.
Length = 296
Score = 28.5 bits (64), Expect = 6.3
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 5/35 (14%)
Query: 335 VHDGKVFLQSDIEEV-----MLRMKQQFLEYGKGK 364
+ +V+++SDI+E MLR +Q + EY KGK
Sbjct: 206 LGVRRVYVKSDIDEDLIDWAMLRSRQIYKEYLKGK 240
>gnl|CDD|225443 COG2890, HemK, Methylase of polypeptide chain release factors
[Translation, ribosomal structure and biogenesis].
Length = 280
Score = 28.1 bits (63), Expect = 8.8
Identities = 9/66 (13%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 220 IDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL----VTHCRDSLQLSGI 275
++ + A ++D+G+G+G + +A++ D + +++ + R++ + +G+
Sbjct: 100 VEAALALLLQLDKRILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL 159
Query: 276 TNGYFI 281
+
Sbjct: 160 VRVLVV 165
>gnl|CDD|225370 COG2813, RsmC, 16S RNA G1207 methylase RsmC [Translation, ribosomal
structure and biogenesis].
Length = 300
Score = 28.0 bits (63), Expect = 8.9
Identities = 34/154 (22%), Positives = 62/154 (40%), Gaps = 40/154 (25%)
Query: 206 LPGV-SA--LDRA-------FPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRK-- 253
LPGV S LD+ P D+ V+D+G G G+ L +A+K
Sbjct: 134 LPGVFSRDKLDKGSRLLLETLPPDLGGK----------VLDLGCGYGVLGLVLAKKSPQA 183
Query: 254 -----DLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP 308
D+N +E R +L +G+ N A+N + + + LI+
Sbjct: 184 KLTLVDVNARAVES---ARKNLAANGVENTEVWASN---LYEPVEGKF--DLIIS----- 230
Query: 309 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 342
NP F+ + + + ++ A + L G++++
Sbjct: 231 NPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWI 264
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.138 0.428
Gapped
Lambda K H
0.267 0.0668 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 21,133,409
Number of extensions: 2033970
Number of successful extensions: 1838
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1816
Number of HSP's successfully gapped: 36
Length of query: 416
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 317
Effective length of database: 6,546,556
Effective search space: 2075258252
Effective search space used: 2075258252
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.0 bits)