RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 014919
(416 letters)
>16pk_A PGK, 3-phosphoglycerate kinase; ternary complex, glycolysis,
transferase, bisubstrate, analog; HET: BIS EPE; 1.60A
{Trypanosoma brucei} SCOP: c.86.1.1 PDB: 13pk_A*
Length = 415
Score = 113 bits (286), Expect = 4e-28
Identities = 60/218 (27%), Positives = 102/218 (46%), Gaps = 18/218 (8%)
Query: 6 EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
+P AI+GG + +K L + R D L+ G M++ + A G + E+ +
Sbjct: 204 PRPLVAIVGGAKVSDKIQLLDNMLQRIDYLLIGGAMAYTFLKAQGYSIGKSKCEESKLEF 263
Query: 66 ASDLIQFARDKHITILYPKDFWC-TKIHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITS 124
A L++ A D+ + ++ P D C T+ + I IP+G +DIGP+++E+
Sbjct: 264 ARSLLKKAEDRKVQVILPIDHVCHTEFKAVDSPLITEDQNIPEGHMALDIGPKTIEKYVQ 323
Query: 125 TITKCKKVIWVGPVK-FRFSSQYSNGASKLTGMLCKVSQGTCNVTVIG---SMACKAIAK 180
TI KCK IW GP+ F YS G + + + + +++IG S + ++
Sbjct: 324 TIGKCKSAIWNGPMGVFEMVP-YSKGTFAIAKAMGRGTHEHGLMSIIGGGDSASAAELSG 382
Query: 181 VSSSIFGLNMVES-----GSAVWEFLKGRMLPGVSALD 213
+ + S G A E L+G+ LPGV+ LD
Sbjct: 383 EAKRM-------SHVSTGGGASLELLEGKTLPGVTVLD 413
>1php_A 3-phosphoglycerate kinase; HET: ADP; 1.65A {Geobacillus
stearothermophilus} SCOP: c.86.1.1 PDB: 3b2b_A* 3uwd_A*
Length = 394
Score = 111 bits (279), Expect = 3e-27
Identities = 57/219 (26%), Positives = 101/219 (46%), Gaps = 23/219 (10%)
Query: 6 EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
++P+ AIIGG + +K + L + D LI G +++ + ALG V L+E+ +
Sbjct: 186 DRPFTAIIGGAKVKDKIGVIDNLLEKVDNLIIGGGLAYTFVKALGHDVGKSLLEEDKIEL 245
Query: 66 ASDLIQFARDKHITILYPKDFWCTKIHHPN-QVEIFPSHGIPDGWEPVDIGPRSVEEITS 124
A ++ A++K + P D + ++ P IP W +DIGP++ E
Sbjct: 246 AKSFMEKAKEKGVRFYMPVDVVVADRFANDANTKVVPIDAIPADWSALDIGPKTRELYRD 305
Query: 125 TITKCKKVIWVGPVK-FRFSSQYSNGASKLTGMLCK-VSQGTCNVTVIG---SMACKAIA 179
I + K V+W GP+ F +++G T + + +++ +VIG S A
Sbjct: 306 VIRESKLVVWNGPMGVFEM-DAFAHG----TKAIAEALAEALDTYSVIGGGDSAAAVEKF 360
Query: 180 KVSSSIFGLNMVES-----GSAVWEFLKGRMLPGVSALD 213
++ + G A EF++G+ LPGV AL+
Sbjct: 361 GLADKM-------DHISTGGGASLEFMEGKQLPGVVALE 392
>3q3v_A Phosphoglycerate kinase; structural genomics, center for structural
genomics of infec diseases, csgid, PGK; HET: PGE; 2.15A
{Campylobacter jejuni subsp}
Length = 403
Score = 110 bits (277), Expect = 5e-27
Identities = 55/218 (25%), Positives = 95/218 (43%), Gaps = 22/218 (10%)
Query: 6 EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
+P+ A++GG + K AL L + D LI G M+F + ALG + L+E+ +
Sbjct: 193 ARPFVAVVGGSKVSGKLQALTNLLPKVDKLIIGGGMAFTFLKALGYDIGNSLLEEELLEE 252
Query: 66 ASDLIQFARDKHITILYPKDFWCT-KIHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITS 124
A+ ++ ++ + I P D ++ P+ IP+GW +DIGP SV
Sbjct: 253 ANKILTKGKNLGVKIYLPVDVVAAPACSQDVPMKFVPAQEIPNGWMGLDIGPASVRLFKE 312
Query: 125 TITKCKKVIWVGPV-KFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIG---SMACKAIAK 180
I+ + + W GP+ F ++S G + + +V+G + A A
Sbjct: 313 VISDAQTIWWNGPMGVFEI-DKFSKG----SIKMSHYISEGHATSVVGGGDTADVVARAG 367
Query: 181 VSSSIFGLNMVES-----GSAVWEFLKGRMLPGVSALD 213
+ + + G A E ++G+ LPGV AL
Sbjct: 368 DADEM-------TFISTGGGASLELIEGKELPGVKALR 398
>1v6s_A Phosphoglycerate kinase; riken structu genomics/proteomics
initiative, RSGI, structural genomics, transferase;
1.50A {Thermus thermophilus} SCOP: c.86.1.1 PDB: 2ie8_A
Length = 390
Score = 109 bits (274), Expect = 1e-26
Identities = 61/221 (27%), Positives = 99/221 (44%), Gaps = 27/221 (12%)
Query: 6 EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
E+PYA ++GG + +K + L R D L+ G M+F + ALG V LVE+ D
Sbjct: 183 ERPYAVVLGGAKVSDKIGVIESLLPRIDRLLIGGAMAFTFLKALGGEVGRSLVEEDRLDL 242
Query: 66 ASDLIQFARDKHITILYPKDFWCTKIHHPN-QVEIFPSHGIPDGWEPVDIGPRSVEEITS 124
A DL+ A + + P+D + + +FP+ IP + +DIGP++ E
Sbjct: 243 AKDLLGRAEALGVRVYLPEDVVAAERIEAGVETRVFPARAIPVPYMGLDIGPKTREAFAR 302
Query: 125 TITKCKKVIWVGPV-KFRFSSQYSNGASKLTGMLCK-VSQGTCNVTVIG---SMACKAIA 179
+ + V W GP+ F + G T + + ++ TV+G S+A A+
Sbjct: 303 ALEGARTVFWNGPMGVFEV-PPFDEG----TLAVGQAIAALEGAFTVVGGGDSVA--AVN 355
Query: 180 KVSSSIFGLNMVES-------GSAVWEFLKGRMLPGVSALD 213
+ L + E G A EFL+ LPG+ L+
Sbjct: 356 R-------LGLKERFGHVSTGGGASLEFLEKGTLPGLEVLE 389
>4fey_A Phosphoglycerate kinase; structural genomics, niaid, national
institute of allergy AN infectious diseases; HET: ADP;
2.30A {Francisella tularensis subsp} PDB: 4ehj_A
Length = 395
Score = 108 bits (273), Expect = 2e-26
Identities = 61/221 (27%), Positives = 96/221 (43%), Gaps = 23/221 (10%)
Query: 6 EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
+KP AAI+GG + K + L+ L + + LI G ++ + A G V L E+
Sbjct: 185 KKPMAAIVGGSKVSTKLSVLNNLLDKVEILIVGGGIANTFIKAEGFDVGNSLYEQDLVAE 244
Query: 66 ASDLIQFARDKHITILYPKDFWCTKIHHPN-QVEIFPSHGIPDGWEPVDIGPRSVEEITS 124
A++++ A+ + I P D K N Q I + +DIGP S + I
Sbjct: 245 ATEILAKAKALGVNIPVPVDVRVAKEFSENAQAIIKKVSDVVADEMILDIGPESQKIIAE 304
Query: 125 TITKCKKVIWVGPV-KFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIG---SMACKAIAK 180
+ ++W GPV F F ++ G T L + +V G ++A AI K
Sbjct: 305 LLKSANTILWNGPVGVFEF-DNFAEG----TKALSLAIAQSHAFSVAGGGDTIA--AIEK 357
Query: 181 VSSSIFGLNMVES-----GSAVWEFLKGRMLPGVSAL-DRA 215
FG+ S G A EFL+G+ LP + L ++A
Sbjct: 358 -----FGIKDQVSYISTAGGAFLEFLEGKKLPAIEILKEKA 393
>1vpe_A Phosphoglycerate kinase; transferase, hyperthermostability,
crystal, AMP-PNP, 3-PGA; HET: ANP 3PG; 2.00A {Thermotoga
maritima} SCOP: c.86.1.1
Length = 398
Score = 106 bits (267), Expect = 1e-25
Identities = 59/219 (26%), Positives = 105/219 (47%), Gaps = 20/219 (9%)
Query: 6 EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
EKPY ++GG + +K + L + D ++ G M F + ALG V VE+ D
Sbjct: 185 EKPYVVVLGGAKVSDKIGVITNLMEKADRILIGGAMMFTFLKALGKEVGSSRVEEDKIDL 244
Query: 66 ASDLIQFARDKHITILYPKDFWCTKIHHPN-QVEIFP-SHGIPDGWEPVDIGPRSVEEIT 123
A +L++ A++K + I+ P D + P + ++ GIP+GW +DIGP ++E
Sbjct: 245 AKELVEKAKEKGVEIVLPVDAVIAQKIEPGVEKKVVRIDDGIPEGWMGLDIGPETIELFK 304
Query: 124 STITKCKKVIWVGPVK-FRFSSQYSNGASKLTGMLCKVSQGTCNVTVIG---SMACKAIA 179
++ K V+W GP+ F ++ G ++ + +++ +TV+G S A
Sbjct: 305 QKLSDAKTVVWNGPMGVFEI-DDFAEGTKQVALAIAALTEKGA-ITVVGGGDSAAAVNKF 362
Query: 180 KVSSSIFGLNMVES-----GSAVWEFLKGRMLPGVSALD 213
+ S G A EFL+G+ LPG++++
Sbjct: 363 GLEDKF-------SHVSTGGGASLEFLEGKELPGIASMR 394
>2wzb_A Phosphoglycerate kinase 1; hereditary hemolytic anemia,
transferase, phosphoprotein, KI glycolysis,
nucleotide-binding; HET: ADP 3PG; 1.47A {Homo sapiens}
PDB: 2wzc_A* 2x13_A* 2x15_A* 2xe6_A* 2xe7_A* 2xe8_A*
2ybe_A* 3c3b_A* 2zgv_A* 3c3a_A* 3c39_A* 3c3c_A* 2wzd_A*
2x14_A* 2y3i_A* 1vjd_A* 1vjc_A* 1kf0_A* 1hdi_A* 2p9t_A*
...
Length = 416
Score = 103 bits (258), Expect = 2e-24
Identities = 57/220 (25%), Positives = 99/220 (45%), Gaps = 21/220 (9%)
Query: 6 EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHAL-GLPVPPELVEKGAND 64
E+P+ AI+GG + +K ++ + + + +I G M+F + L + + L ++
Sbjct: 204 ERPFLAILGGAKVADKIQLINNMLDKVNEMIIGGGMAFTFLKVLNNMEIGTSLFDEEGAK 263
Query: 65 AASDLIQFARDKHITILYPKDFWCTKIHHP--NQVEIFPSHGIPDGWEPVDIGPRSVEEI 122
DL+ A + I P DF + + GIP GW +D GP S ++
Sbjct: 264 IVKDLMSKAEKNGVKITLPVDFVTADKFDENAKTGQATVASGIPAGWMGLDCGPESSKKY 323
Query: 123 TSTITKCKKVIWVGPVK-FRFSSQYSNGASKLTGMLCKVSQGTCNVTVIG---SMACKAI 178
+T+ K+++W GPV F + + ++ G L + K + C +T+IG + C A
Sbjct: 324 AEAVTRAKQIVWNGPVGVFEWEA-FARGTKALMDEVVKATSRGC-ITIIGGGDTATCCAK 381
Query: 179 AKVSSSIFGLNMVES-----GSAVWEFLKGRMLPGVSALD 213
+ S G A E L+G++LPGV AL
Sbjct: 382 WNTEDKV-------SHVSTGGGASLELLEGKVLPGVDALS 414
>3oz7_A Phosphoglycerate kinase; transferase, ATP binding, glycolysi
malaria parasite; 2.70A {Plasmodium falciparum} PDB:
1ltk_A* 3oza_A
Length = 417
Score = 102 bits (257), Expect = 3e-24
Identities = 55/220 (25%), Positives = 98/220 (44%), Gaps = 21/220 (9%)
Query: 6 EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHAL-GLPVPPELVEKGAND 64
++P AI+GG + +K + L + D +I G M++ L + + L ++ +
Sbjct: 206 QRPLLAILGGAKVSDKIQLIKNLLDKVDRMIIGGGMAYTFKKVLNNMKIGTSLFDEAGSK 265
Query: 65 AASDLIQFARDKHITILYPKDFWCTKIHHPN-QVEIFP-SHGIPDGWEPVDIGPRSVEEI 122
++++ A+ K++ I P DF N + GIPD W +D GP+S+E
Sbjct: 266 IVGEIMEKAKAKNVQIFLPVDFKIADNFDNNANTKFVTDEEGIPDNWMGLDAGPKSIENY 325
Query: 123 TSTITKCKKVIWVGPVK-FRFSSQYSNGASKLTGMLCKVSQGTCNVTVIG---SMACKAI 178
I K VIW GP F ++ G+ + ++ +V++ +T++G + +
Sbjct: 326 KDVILTSKTVIWNGPQGVFEM-PNFAKGSIECLNLVVEVTKKGA-ITIVGGGDTASLVEQ 383
Query: 179 AKVSSSIFGLNMVES-----GSAVWEFLKGRMLPGVSALD 213
+ I S G A E L+G+ LPGV AL
Sbjct: 384 QNKKNEI-------SHVSTGGGASLELLEGKELPGVLALS 416
>2cun_A Phosphoglycerate kinase; structural genomics, tanpaku 3000,
structural genomics/proteomics initiative, RSGI, NPPSFA;
HET: 3PG; 2.10A {Pyrococcus horikoshii}
Length = 410
Score = 101 bits (255), Expect = 5e-24
Identities = 46/225 (20%), Positives = 91/225 (40%), Gaps = 27/225 (12%)
Query: 6 EKPYAAIIGGGNLCNKAAALHFL--ASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGAN 63
+ P ++GG + + + + R D ++ GL++ A G + + VE
Sbjct: 189 DSPKIYVLGGAKVEDSLKVVENVLRRERADLVLTGGLVANVFTLAKGFDLGRKNVEFMKK 248
Query: 64 DAASDLIQFARDK----HITILYPKDFWCTKIHHPN-QVEIFPSHGIPDGWEPVDIGPRS 118
D ++ A + + I P DF + + G+ ++ +DIG R+
Sbjct: 249 KGLLDYVKHAEEILDEFYPYIRTPVDFAVDYKGERVEIDLLSENRGLLHQYQIMDIGKRT 308
Query: 119 VEEITSTITKCKKVIWVGPVK-FRFSSQYSNGASKLTGMLCKVSQGTCNVTVIG---SMA 174
E+ + K + ++ GP+ F +++ G T + K + +V+G S+A
Sbjct: 309 AEKYREILMKARIIVANGPMGVFER-EEFAIG----TVEVFKAIADSPAFSVLGGGHSIA 363
Query: 175 CKAIAKVSSSIFGLNMVE--S--GSAVWEFLKGRMLPGVSALDRA 215
+I K +G+ + S G A+ F G LP + AL +
Sbjct: 364 --SIQK-----YGITGITHISTGGGAMLSFFAGEELPVLRALQIS 401
>1qpg_A PGK, 3-phosphoglycerate kinase; phosphotransferase (carboxyl
acceptor), acetylation, glycolysis; HET: MAP 3PG; 2.40A
{Saccharomyces cerevisiae} SCOP: c.86.1.1 PDB: 3pgk_A*
Length = 415
Score = 100 bits (252), Expect = 2e-23
Identities = 56/220 (25%), Positives = 94/220 (42%), Gaps = 21/220 (9%)
Query: 6 EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHAL-GLPVPPELVEKGAND 64
+P+ AI+GG + +K + L + D +I G M+F L + + +K +
Sbjct: 202 TRPFLAILGGAKVADKIQLIDNLLDKVDSIIIGGGMAFTFKKVLENTEIGDSIFDKAGAE 261
Query: 65 AASDLIQFARDKHITILYPKDFWCTKIHHPN-QVEIFP-SHGIPDGWEPVDIGPRSVEEI 122
L++ A+ K + ++ P DF + + GIP GW+ +D GP S +
Sbjct: 262 IVPKLMEKAKAKGVEVVLPVDFIIADAFSADANTKTVTDKEGIPAGWQGLDNGPESRKLF 321
Query: 123 TSTITKCKKVIWVGPVK-FRFSSQYSNGASKLTGMLCKVSQGTCNVTVIG---SMACKAI 178
+T+ K K ++W GP F F +++ G L + K S +IG +
Sbjct: 322 AATVAKAKTIVWNGPPGVFEF-EKFAAGTKALLDEVVKSSAAGN-TVIIGGGDTATVAKK 379
Query: 179 AKVSSSIFGLNMVES-----GSAVWEFLKGRMLPGVSALD 213
V+ I S G A E L+G+ LPGV+ L
Sbjct: 380 YGVTDKI-------SHVSTGGGASLELLEGKELPGVAFLS 412
>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1,
S-adenosyl-L-methionine, tRNA Pro structural genomics,
structural genomics consortium, SGC; HET: SAM; 1.55A
{Homo sapiens}
Length = 235
Score = 97.1 bits (242), Expect = 2e-23
Identities = 43/211 (20%), Positives = 77/211 (36%), Gaps = 19/211 (9%)
Query: 208 GVSALDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCR 267
D AQ DIG G G L+ ++ D LGLE+
Sbjct: 24 FAPLTQNQSHDDPKDKKEKRAQAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVS 83
Query: 268 DSLQL----------SGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEH 317
D +Q G N + +NA + G+L + P+P F R +H
Sbjct: 84 DYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFY--KGQLTKMFFLFPDPHFKRTKH 141
Query: 318 RWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTN 377
+WR++ +L+ + +L G V+ +D+ E+ M F E+ + V ++D +
Sbjct: 142 KWRIISPTLLAEYAYVLRVGGLVYTITDVLELHDWMCTHFEEHPLFERVPLEDLSE---- 197
Query: 378 QGGWLGENSFGVRSDWEQHVIDRGAPMYRLM 408
G ++ + V+ G + +
Sbjct: 198 ---DPVVGHLGTSTEEGKKVLRNGGKNFPAI 225
>1zmr_A Phosphoglycerate kinase; transferase, glycolysis; 2.40A
{Escherichia coli}
Length = 387
Score = 98.7 bits (247), Expect = 5e-23
Identities = 55/221 (24%), Positives = 88/221 (39%), Gaps = 28/221 (12%)
Query: 6 EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
+P AI+GG + K L L+ D LI G ++ + A G V L E D
Sbjct: 182 ARPMVAIVGGSKVSTKLTVLDSLSKIADQLIVGGGIANTFIAAQGHDVGKSLYEADLVDE 241
Query: 66 ASDLIQFARDKHITILYPKDFWCTKIHHPN-QVEIFPSHGIPDGWEPVDIGPRSVEEITS 124
A L+ I P D + + + + +DIG S +E+
Sbjct: 242 AKRLLTTCN-----IPVPSDVRVATEFSETAPATLKSVNDVKADEQILDIGDASAQELAE 296
Query: 125 TITKCKKVIWVGPV-KFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIG---SMACKAIAK 180
+ K ++W GPV F F + G T ++ + ++ G ++A AI
Sbjct: 297 ILKNAKTILWNGPVGVFEF-PNFRKG----TEIVANAIADSEAFSIAGGGDTLA--AIDL 349
Query: 181 VSSSIFGLNMVES-----GSAVWEFLKGRMLPGVSAL-DRA 215
FG+ S G A EF++G++LP V+ L +RA
Sbjct: 350 -----FGIADKISYISTGGGAFLEFVEGKVLPAVAMLEERA 385
>1fw8_A PGK P72, phosphoglycerate kinase; phosphotransferase, glycoly
mutant, permutation, permuted sequence, protein foldin
domain protein; 2.30A {Saccharomyces cerevisiae} SCOP:
c.86.1.1
Length = 416
Score = 96.5 bits (241), Expect = 4e-22
Identities = 56/226 (24%), Positives = 93/226 (41%), Gaps = 21/226 (9%)
Query: 6 EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHAL-GLPVPPELVEKGAND 64
+P+ AI+GG + +K + L + D +I G M+F L + + +K +
Sbjct: 132 TRPFLAILGGAKVADKIQLIDNLLDKVDSIIIGGGMAFTFKKVLENTEIGDSIFDKAGAE 191
Query: 65 AASDLIQFARDKHITILYPKDFWCTKIHHPN-QVEIFP-SHGIPDGWEPVDIGPRSVEEI 122
L++ A+ K + ++ P DF + + GIP GW+ +D GP S +
Sbjct: 192 IVPKLMEKAKAKGVEVVLPVDFIIADAFSADANTKTVTDKEGIPAGWQGLDNGPESRKLF 251
Query: 123 TSTITKCKKVIWVGPV-KFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIG---SMACKAI 178
+T+ K K ++W GP F F ++ G L + K S +IG +
Sbjct: 252 AATVAKAKTIVWNGPPGVFEFEK-FAAGTKALLDEVVKSSAAGN-TVIIGGGDTATVAKK 309
Query: 179 AKVSSSIFGLNMVES-----GSAVWEFLKGRMLPGVSALDRAFPFD 219
V+ I S G A E L+G+ LPGV+ L
Sbjct: 310 YGVTDKI-------SHVSTGGGASLELLEGKELPGVAFLSEKKSLS 348
>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine,
phosphorylation, M7G, spout MT, tRNA processing; HET:
SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E
Length = 246
Score = 91.0 bits (226), Expect = 3e-21
Identities = 32/166 (19%), Positives = 67/166 (40%), Gaps = 23/166 (13%)
Query: 217 PFDIDWSAAYHDPA---------QPLVVDIGSGNGLFLLGMARKRKDLNFLGLE------ 261
P D+DWS Y + + DIG G G ++ ++ + LG+E
Sbjct: 27 PQDMDWSKLYPYYKNAENGQMTKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVT 86
Query: 262 ------LVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRP 315
++ ++ G N + NA + G+L + P+P F +
Sbjct: 87 NYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFE--KGQLSKMFFCFPDPHFKQR 144
Query: 316 EHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYG 361
+H+ R++ +L+ + +L G V+ +D++++ M + E+
Sbjct: 145 KHKARIITNTLLSEYAYVLKEGGVVYTITDVKDLHEWMVKHLEEHP 190
>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold
methyltransferase, tRNA modification,
S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A
{Escherichia coli} PDB: 3dxx_A* 3dxz_A*
Length = 218
Score = 76.6 bits (189), Expect = 3e-16
Identities = 37/149 (24%), Positives = 65/149 (43%), Gaps = 13/149 (8%)
Query: 211 ALDRAFP-FDIDWSAAYHDPAQ------PLVVDIGSGNGLFLLGMARKRKDLNFLGLEL- 262
AL+ +P +++S D P+ ++IG G G L+ MA+ R + +FLG+E+
Sbjct: 8 ALENYWPVMGVEFSEDMLDFPALFGREAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVH 67
Query: 263 ---VTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRW 319
V C S G++N + +A ++ L +V + P+P ++
Sbjct: 68 SPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIP--DNSLRMVQLFFPDPWHKARHNKR 125
Query: 320 RMVQRSLVEAVSDLLVHDGKVFLQSDIEE 348
R+VQ E V L G + +D E
Sbjct: 126 RIVQVPFAELVKSKLQLGGVFHMATDWEP 154
>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis}
SCOP: c.66.1.53
Length = 213
Score = 72.3 bits (178), Expect = 7e-15
Identities = 25/141 (17%), Positives = 63/141 (44%), Gaps = 8/141 (5%)
Query: 212 LDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL----VTHCR 267
+ + W+ + + P+ +++G+G G F+ GMA++ D+N++G+EL +
Sbjct: 21 ISNPADYKGKWNTVFGNDN-PIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAV 79
Query: 268 DSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLV 327
++ S N + +A T + PG++ V + +P + + R+ +
Sbjct: 80 QKVKDSEAQNVKLLNIDAD-TLTDVFE--PGEVKRVYLNFSDPWPKKRHEKRRLTYSHFL 136
Query: 328 EAVSDLLVHDGKVFLQSDIEE 348
+ +++ G + ++D
Sbjct: 137 KKYEEVMGKGGSIHFKTDNRG 157
>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich,
S-adenosylmeth dependent, structural genomics, PSI;
2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53
Length = 214
Score = 70.3 bits (173), Expect = 3e-14
Identities = 23/141 (16%), Positives = 64/141 (45%), Gaps = 8/141 (5%)
Query: 212 LDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL----VTHCR 267
+ W + + P+ V++GSG G F+ GMA++ D+N++G+++ +++
Sbjct: 24 VLNPLEAKAKWRDLFGNDN-PIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYAL 82
Query: 268 DSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLV 327
D + G+ N + + + G++ + + +P + + R+ ++ +
Sbjct: 83 DKVLEVGVPNIKLLWVDGSDLTDYFE---DGEIDRLYLNFSDPWPKKRHEKRRLTYKTFL 139
Query: 328 EAVSDLLVHDGKVFLQSDIEE 348
+ +L +G++ ++D
Sbjct: 140 DTFKRILPENGEIHFKTDNRG 160
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic
resistance, aminoglycoside, S-adenosyl-L-methionine;
HET: SAH; 1.69A {Streptomyces SP}
Length = 218
Score = 69.7 bits (170), Expect = 6e-14
Identities = 17/171 (9%), Positives = 49/171 (28%), Gaps = 19/171 (11%)
Query: 219 DIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL--------VTHCRDSL 270
D ++ +V+D+G+G+G +AR+ + L+
Sbjct: 17 DAEFEQLR-SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKP 75
Query: 271 QLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAV 330
G+ N ++ A P + + P + ++ +
Sbjct: 76 AKGGLPNLLYLWATA--------ERLPPLSGVGELHVLMP-WGSLLRGVLGSSPEMLRGM 126
Query: 331 SDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGW 381
+ + + ++ + + E+ + + + + GW
Sbjct: 127 AAVCRPGASFLVALNLHAWRPSV-PEVGEHPEPTPDSADEWLAPRYAEAGW 176
>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH;
1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A*
3mte_A*
Length = 225
Score = 52.9 bits (126), Expect = 3e-08
Identities = 19/133 (14%), Positives = 44/133 (33%), Gaps = 16/133 (12%)
Query: 221 DWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVT--------HCRDSLQL 272
+ + + +D+G+G+G + +A ++ ++G++ V
Sbjct: 16 ELTEIIGQF-DRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSK 74
Query: 273 SGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSD 332
G++N F+ A S+ +SI P R ++ V+D
Sbjct: 75 GGLSNVVFVIAAA----ESLPFELKNIADSISILFPWGTL---LEYVIKPNRDILSNVAD 127
Query: 333 LLVHDGKVFLQSD 345
L + +
Sbjct: 128 LAKKEAHFEFVTT 140
>3lpm_A Putative methyltransferase; structural genomics, protein structure
initiative, NEW YORK structural genomix research
consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Length = 259
Score = 43.2 bits (102), Expect = 7e-05
Identities = 22/143 (15%), Positives = 48/143 (33%), Gaps = 18/143 (12%)
Query: 234 VVDIGSGNGLFLLGMARKRKDLNFLGLEL----VTHCRDSLQLSGITN---------GYF 280
++D+ SGNG+ L ++ R +G+E+ + S+ + + +
Sbjct: 53 IIDLCSGNGIIPLLLST-RTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKI 111
Query: 281 IATNATSTFRSIVASYP-GKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGK 339
+ + P S++ N F H + + LL GK
Sbjct: 112 TDLIPKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGK 171
Query: 340 VFL---QSDIEEVMLRMKQQFLE 359
+ +++ M++ LE
Sbjct: 172 ANFVHRPERLLDIIDIMRKYRLE 194
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 43.7 bits (102), Expect = 1e-04
Identities = 46/345 (13%), Positives = 87/345 (25%), Gaps = 82/345 (23%)
Query: 76 KHITILYPKD------FWCTKIHHPNQVEIFPSHGI-PD-GW--EPVDIGPRSVEEITST 125
HI + FW V+ F + + + P+ R +T
Sbjct: 52 DHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRM 111
Query: 126 ITKCKKVIWVGPVKFRFSSQYS----NGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKV 181
+ + ++ F ++Y+ KL L ++ NV + G
Sbjct: 112 YIEQRDRLYNDNQVF---AKYNVSRLQPYLKLRQALLELRPAK-NVLIDG---------- 157
Query: 182 SSSIFGLNMVESGSAVWEFLKGRMLPGVSALD----RAFPFDIDW--SAAYHDPA----- 230
++ SG + L F I W + P
Sbjct: 158 --------VLGSGKTW--------VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM 201
Query: 231 -QPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVT------HCRDSLQLSGITNG----Y 279
Q L+ I + + ++ + EL + L L + N
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA 261
Query: 280 F-------IATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSD 332
F + T + A+ + L E + ++ + L D
Sbjct: 262 FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT---LTPDEVK-SLLLKYLDCRPQD 317
Query: 333 L--LVHDGKVFLQSDIEEVMLRMK---QQFLEYGKGKLVLVQDEC 372
L V S I E + + KL + +
Sbjct: 318 LPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS 362
Score = 38.7 bits (89), Expect = 0.004
Identities = 24/145 (16%), Positives = 43/145 (29%), Gaps = 50/145 (34%)
Query: 252 RKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPD 311
R + FL + T R S +T Y + + A Y VS
Sbjct: 88 RINYKFLMSPIKTEQRQP---SMMTRMYIEQRDRLYNDNQVFAKYN-----VS------- 132
Query: 312 FNRPEHRWRMVQRSLVEA--VSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQ 369
R + + ++++L+E ++L+ G + G GK +
Sbjct: 133 --RLQPYLK-LRQALLELRPAKNVLID-G--------------VL------GSGKTWVAL 168
Query: 370 DEC---DTKTNQGG---WLGENSFG 388
D C + WL +
Sbjct: 169 DVCLSYKVQCKMDFKIFWL---NLK 190
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted
transferase, predicted O-methyltransferase, PFAM
PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Length = 260
Score = 39.1 bits (91), Expect = 0.001
Identities = 18/147 (12%), Positives = 39/147 (26%), Gaps = 23/147 (15%)
Query: 234 VVDIGSGNGLFLLGMARKRKDLNFLGLEL----VTHCRDSLQLSGITN------------ 277
+ D+G+G G + +A + + E R SL+L
Sbjct: 40 IADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADV 99
Query: 278 GYFIATNATSTFRS----IVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDL 333
+ V P + P+ + + S +
Sbjct: 100 TLRAKARVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAI 159
Query: 334 LVHDGK---VFLQSDIEEVMLRMKQQF 357
+V G+ + + E++ +F
Sbjct: 160 MVSGGQLSLISRPQSVAEIIAACGSRF 186
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown
function, PSI-2, protein structure initiative; 2.09A
{Methanosarcina mazei}
Length = 234
Score = 36.3 bits (84), Expect = 0.010
Identities = 10/68 (14%), Positives = 29/68 (42%), Gaps = 5/68 (7%)
Query: 195 SAVWEFLKGRMLPGVSALDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKD 254
S ++ + + +P D + + ++ + ++D+G+G GL + K +
Sbjct: 14 SGKYDEQRRKFIPC---FDDFYGVSVSIASVDTENPD--ILDLGAGTGLLSAFLMEKYPE 68
Query: 255 LNFLGLEL 262
F +++
Sbjct: 69 ATFTLVDM 76
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein
structure initiative, PSI, center for eukaryotic
structural genomics; HET: MSE SAH T8N; 1.12A
{Saccharomyces cerevisiae}
Length = 299
Score = 34.3 bits (78), Expect = 0.061
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 220 IDWSAAYHDPAQPLVVDIGSGNGLFLLGMAR 250
YHD + L+VD+G G G L MA+
Sbjct: 26 YKMIDEYHDGERKLLVDVGCGPGTATLQMAQ 56
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.5 bits (76), Expect = 0.15
Identities = 28/140 (20%), Positives = 48/140 (34%), Gaps = 44/140 (31%)
Query: 51 LPV--P---PELVEKGANDAASDLIQFARDKHITILYPKDFWCTKIHHPNQVEIFPSHGI 105
LPV P L A+ + + +++ + ++I P +
Sbjct: 421 LPVASPFHSHLL-----VPASDLINKDLVKNNVSF------------NAKDIQI-PVYDT 462
Query: 106 PDGWEPVDIGPRSV-EEITSTITKC---KKVIWVGPVKFR------FSSQYSNGASKLTG 155
DG D+ R + I+ I C V W +F+ F ++G LT
Sbjct: 463 FDG---SDL--RVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTH 517
Query: 156 MLCKVSQGTCNVTVI--GSM 173
+ GT V VI G++
Sbjct: 518 ---RNKDGTG-VRVIVAGTL 533
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein
structure initiative; 2.46A {Archaeoglobus fulgidus}
Length = 240
Score = 33.0 bits (75), Expect = 0.15
Identities = 16/115 (13%), Positives = 35/115 (30%), Gaps = 30/115 (26%)
Query: 234 VVDIGSGNGLFLLGMARKRKDLNFLGLEL----VTHCRDSLQLSGITNGYFIATNATSTF 289
V+DIG G G FL K + + +G+++ + C + ++ +
Sbjct: 45 VLDIGCGRGEFLELC--KEEGIESIGVDINEDMIKFCEGKFNVVKSDAIEYLKSLPDKYL 102
Query: 290 RSIVASY----------------------PGKLILVSIQCPNPDFNRPEHRWRMV 322
++ S+ I++ PNP + +
Sbjct: 103 DGVMISHFVEHLDPERLFELLSLCYSKMKYSSYIVIES--PNPTSLYSLINFYID 155
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics,
midwest cente structural genomics, protein structure
initiative; 1.95A {Streptococcus thermophilus} PDB:
3lby_A*
Length = 185
Score = 31.8 bits (72), Expect = 0.27
Identities = 21/113 (18%), Positives = 35/113 (30%), Gaps = 9/113 (7%)
Query: 234 VVDIGSGNGLFLLGMARKRKDLNFLGLEL----VTHCRDSLQLSGITNGYFIATNATSTF 289
VVD GNG +A K + ++ + L GI N I
Sbjct: 26 VVDATMGNGNDTAFLAGLSKKV--YAFDVQEQALGKTSQRLSDLGIENTELILDG-HENL 82
Query: 290 RSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 342
V I P+ D + ++ +E + D L G++ +
Sbjct: 83 DHYVREPIRAAIFNLGYLPSADKSVITKPHTTLEA--IEKILDRLEVGGRLAI 133
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S
rRNA, NESG, structural genomics, PSI, protein structure
initiative; HET: SAM; 2.80A {Escherichia coli} SCOP:
c.66.1.33
Length = 269
Score = 30.7 bits (69), Expect = 0.70
Identities = 10/39 (25%), Positives = 16/39 (41%)
Query: 224 AAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL 262
D V+DIG G G + A ++ GL++
Sbjct: 79 RERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDV 117
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics
consortium (SGC), methyltransferase, phosphoprotein,
S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}
Length = 292
Score = 30.7 bits (68), Expect = 0.73
Identities = 11/56 (19%), Positives = 19/56 (33%), Gaps = 4/56 (7%)
Query: 234 VVDIGSGNGLFLLGMARKRKDLNFLGL----ELVTHCRDSLQLSGITNGYFIATNA 285
V+D+G G L +A K +GL L+ R +++
Sbjct: 50 VLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTL 105
>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal;
HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*
Length = 212
Score = 30.6 bits (69), Expect = 0.77
Identities = 18/109 (16%), Positives = 31/109 (28%), Gaps = 13/109 (11%)
Query: 5 DEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMS--FQIMHALGLPVPPELVEKGA 62
D A+IG G + C ++ + S + G+ V P G
Sbjct: 54 DAYGDKALIGAGTVLKPEQVDALARMGCQLIVTPNIHSEVIRRAVGYGMTVCP-----GC 108
Query: 63 NDAASDLIQFARDKHITILYPKD-FWCTKI-----HHPNQVEIFPSHGI 105
A ++P F I P+ + +F G+
Sbjct: 109 ATATEAFTALEAGAQALKIFPSSAFGPQYIKALKAVLPSDIAVFAVGGV 157
>3ege_A Putative methyltransferase from antibiotic biosyn pathway;
YP_324569.1, putative methyltransferase from antibiotic
BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Length = 261
Score = 30.2 bits (68), Expect = 1.1
Identities = 9/43 (20%), Positives = 18/43 (41%), Gaps = 4/43 (9%)
Query: 213 DRAFPFDIDWSAAYHDPAQP----LVVDIGSGNGLFLLGMARK 251
+ DI A + ++ DIG+G G + + +A +
Sbjct: 13 SQTRVPDIRIVNAIINLLNLPKGSVIADIGAGTGGYSVALANQ 55
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint
center for structural genomics, JCSG; HET: SAH; 2.11A
{Anabaena variabilis atcc 29413}
Length = 245
Score = 30.0 bits (67), Expect = 1.3
Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 213 DRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMAR 250
+RA D+ +P P ++D GNG +++
Sbjct: 40 ERAVVVDLPRFELLFNPELP-LIDFACGNGTQTKFLSQ 76
>3fvy_A Dipeptidyl-peptidase 3; SGC, DPP3, alternative splicing,
aminopeptidase, cytoplasm, hydrolase, metal-binding,
metalloprotease, phosphoprotein; 1.90A {Homo sapiens}
PDB: 3t6b_A 3t6j_A
Length = 728
Score = 30.2 bits (67), Expect = 1.5
Identities = 21/91 (23%), Positives = 34/91 (37%), Gaps = 1/91 (1%)
Query: 261 ELVTHCRDSLQLSGITNGYFIATNATSTFRSI-VASYPGKLILVSIQCPNPDFNRPEHRW 319
LV L+ + T F S+ V ++ G I I PN D R +
Sbjct: 347 RLVASAEQLLKELPWPPTFEKDKFLTPDFTSLDVLTFAGSGIPAGINIPNYDDLRQTEGF 406
Query: 320 RMVQRSLVEAVSDLLVHDGKVFLQSDIEEVM 350
+ V V AV+ + FL+ D +++
Sbjct: 407 KNVSLGNVLAVAYATQREKLTFLEEDDKDLY 437
>2p7i_A Hypothetical protein; putative methyltransferase, structural
genomics, joint cente structural genomics, JCSG; 1.74A
{Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41
PDB: 2p7h_A
Length = 250
Score = 29.4 bits (66), Expect = 1.6
Identities = 6/29 (20%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 234 VVDIGSGNGLFLLGMARKRKDLNFLGLEL 262
++++GS G F + D+ +E
Sbjct: 46 LLELGSFKGDFTSRLQEHFNDI--TCVEA 72
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics,
tubercidin, structu genomics, structural genomics
consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB:
4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A*
3qow_A* 3qox_A* 4er3_A* 3sr4_A*
Length = 438
Score = 29.4 bits (65), Expect = 2.6
Identities = 26/134 (19%), Positives = 47/134 (35%), Gaps = 25/134 (18%)
Query: 234 VVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIV 293
VD+GSG G +L +A + G+E A FR +
Sbjct: 177 FVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAK------------YAETMDREFRKWM 224
Query: 294 ASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRM 353
Y K +++ DF E R R+ + ++ + F EV ++
Sbjct: 225 KWYGKKHAEYTLER--GDFLSEEWRERIAN-------TSVIFVNNFAFG----PEVDHQL 271
Query: 354 KQQFLEYGKGKLVL 367
K++F +G ++
Sbjct: 272 KERFANMKEGGRIV 285
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural
genomics, BSGC structure funded by NIH; 1.80A
{Methanocaldococcus jannaschii} SCOP: c.66.1.4
Length = 194
Score = 28.8 bits (65), Expect = 2.8
Identities = 23/140 (16%), Positives = 57/140 (40%), Gaps = 37/140 (26%)
Query: 234 VVDIGSGNGLFLLGMARKRK-----DLNFLGLELVTHCRDSLQLSGITNGY--FIATNAT 286
++D+G G G+ + +A + K D+N ++L +++++L+ + N + ++
Sbjct: 56 ILDLGCGYGVIGIALADEVKSTTMADINRRAIKL---AKENIKLNNLDNYDIRVVHSDLY 112
Query: 287 S-----TFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVF 341
+ I+ NP P + V ++E +LL +G+++
Sbjct: 113 ENVKDRKYNKIIT--------------NP----PIRAGKEVLHRIIEEGKELLKDNGEIW 154
Query: 342 L----QSDIEEVMLRMKQQF 357
+ + + + MK F
Sbjct: 155 VVIQTKQGAKSLAKYMKDVF 174
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative,
structural genomics, NEW YORK SGX research center for
structural genomics; 1.86A {Methanosarcina mazei}
Length = 276
Score = 28.7 bits (64), Expect = 3.7
Identities = 13/58 (22%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 234 VVDIGSGNGLFLLGMARKRKDLNFLGLEL----VTHCRDSLQLSGITNGYFIATNATS 287
V++ G G G + +A+ D +++ + R++ + +GI N F+ N S
Sbjct: 41 VLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFS 98
>3cc8_A Putative methyltransferase; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative,
PS transferase; 1.64A {Bacillus cereus}
Length = 230
Score = 28.6 bits (64), Expect = 3.8
Identities = 5/18 (27%), Positives = 8/18 (44%)
Query: 234 VVDIGSGNGLFLLGMARK 251
V+DIG +G +
Sbjct: 36 VLDIGCSSGALGAAIKEN 53
>3rrs_A Cellobiose phosphorylase; GH94, alpha barrel, disaccharide
phosphorylase, transferase; 1.70A {Cellulomonas uda}
PDB: 2cqs_A* 2cqt_A* 3qfy_A* 3qfz_A* 3qg0_A* 3act_A*
3acs_A* 3afj_A*
Length = 822
Score = 28.6 bits (63), Expect = 4.3
Identities = 8/83 (9%), Positives = 28/83 (33%), Gaps = 2/83 (2%)
Query: 244 FLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILV 303
++LG + + + + + + + + + + F ++ + L
Sbjct: 265 YVLGYVENPDEEKWA--DDAKQVVNKERAHALLSRFATSEQTDAAFAALKDYWTDLLSTY 322
Query: 304 SIQCPNPDFNRPEHRWRMVQRSL 326
S+ + +R + W Q +
Sbjct: 323 SVSSNDEKLDRMVNIWNQYQCMV 345
>3qde_A Cellobiose phosphorylase; cellulase, phosphate, transferase; 2.40A
{Clostridium thermocellum}
Length = 811
Score = 28.6 bits (63), Expect = 4.5
Identities = 8/80 (10%), Positives = 25/80 (31%), Gaps = 4/80 (5%)
Query: 244 FLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILV 303
F++G + + + ++ + + + F + + + L
Sbjct: 260 FIIGYVENKDEEKWESKGVINK----KKAYEMIEQFNTVEKVDKAFEELKSYWNALLSKY 315
Query: 304 SIQCPNPDFNRPEHRWRMVQ 323
++ + NR + W Q
Sbjct: 316 FLESHDEKLNRMVNIWNQYQ 335
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB:
3jwj_A
Length = 217
Score = 28.0 bits (62), Expect = 4.8
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 234 VVDIGSGNGLFLLGMARKRKDLNFLGLEL 262
V+D+G G G L + + G+++
Sbjct: 33 VIDLGCGQGNLLKILLKDSFFEQITGVDV 61
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD
factor, fixation, symbiosis, alpha/beta structure; HET:
SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Length = 216
Score = 27.9 bits (62), Expect = 4.8
Identities = 5/18 (27%), Positives = 8/18 (44%)
Query: 234 VVDIGSGNGLFLLGMARK 251
++IG G F +A
Sbjct: 55 GLEIGCAAGAFTEKLAPH 72
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU
genomics, PSI-2, protein structure initiative; HET: SAH;
2.40A {Micromonospora echinospora}
Length = 348
Score = 28.0 bits (63), Expect = 6.2
Identities = 16/95 (16%), Positives = 26/95 (27%), Gaps = 29/95 (30%)
Query: 196 AVWEFLKGRMLPGVSALDRAFPFDIDWSAAYHDP-----------------AQPL----- 233
+ + + P A F + + D L
Sbjct: 123 TMSHRVASALGPERPAFADIFGSSL-DAYFDGDAEVEALYYEGMETVSAAEHLILARAGD 181
Query: 234 ------VVDIGSGNGLFLLGMARKRKDLNFLGLEL 262
V D+G G G FLL + R+ L + L+
Sbjct: 182 FPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDR 216
>2gjx_A Beta-hexosaminidase alpha chain; beta-hexosaminidase A,
glycosidase, TAY-sachs disease, GM2 ganglisode, TIM
barrel, hydrolase; HET: NAG BMA NDG; 2.80A {Homo
sapiens} SCOP: c.1.8.6 d.92.2.1 PDB: 2gk1_A*
Length = 507
Score = 28.2 bits (63), Expect = 6.3
Identities = 10/36 (27%), Positives = 20/36 (55%), Gaps = 9/36 (25%)
Query: 55 PELVEKGANDAAS---------DLIQFARDKHITIL 81
PEL+ KG+ + + ++I++AR + I +L
Sbjct: 197 PELMRKGSYNPVTHIYTAQDVKEVIEYARLRGIRVL 232
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC,
structural genomics, protein structure initiative; HET:
SAM; 2.72A {Aquifex aeolicus}
Length = 219
Score = 27.7 bits (62), Expect = 6.5
Identities = 11/62 (17%), Positives = 26/62 (41%), Gaps = 11/62 (17%)
Query: 234 VVDIGSGNGLFLLGMARKRK--------DLNFLGLELVTHCRDSLQLSGITNGYFIATNA 285
V+D+G+G G +L +++ D+ E+V + + + G+ N + +
Sbjct: 41 VLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQ---EEMVNYAWEKVNKLGLKNVEVLKSEE 97
Query: 286 TS 287
Sbjct: 98 NK 99
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum}
PDB: 3jwi_A
Length = 219
Score = 27.6 bits (61), Expect = 7.5
Identities = 7/29 (24%), Positives = 15/29 (51%)
Query: 234 VVDIGSGNGLFLLGMARKRKDLNFLGLEL 262
V+D+G G G L + + + G+++
Sbjct: 33 VIDLGCGEGNLLSLLLKDKSFEQITGVDV 61
>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification,
transferase; HET: SAM; 2.00A {Methanocaldococcus
jannaschii}
Length = 272
Score = 27.7 bits (61), Expect = 7.7
Identities = 12/58 (20%), Positives = 21/58 (36%)
Query: 222 WSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGITNGY 279
A+ +VVD+ +G G F + +A+ K +E L + N
Sbjct: 111 KRMAFISNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKL 168
>1now_A Beta-hexosaminidase beta chain; (beta/alpha)8-barrel, homodimer,
family 20 glycosidase, HYDR; HET: NAG IFG; 2.20A {Homo
sapiens} SCOP: c.1.8.6 d.92.2.1 PDB: 1nou_A* 1np0_A*
2gjx_B* 3lmy_A* 1o7a_A* 2gk1_B*
Length = 507
Score = 27.8 bits (62), Expect = 8.4
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 10/36 (27%)
Query: 55 PELVEKGA---------NDAASDLIQFARDKHITIL 81
PEL KG+ ND +I++AR + I +L
Sbjct: 203 PELSNKGSYSLSHVYTPNDVR-MVIEYARLRGIRVL 237
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate,
tailoring enzyme, polyketide, S-adenosyl-L-homocystein;
HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP:
a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Length = 360
Score = 27.7 bits (62), Expect = 8.8
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 234 VVDIGSGNGLFLLGMARKRKDLNFLGLEL 262
V+D+G G G F +AR+ ++ LE+
Sbjct: 187 VLDVGGGKGGFAAAIARRAPHVSATVLEM 215
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent
methyltransfer structural genomics, PSI-2; HET: MSE;
1.90A {Burkholderia thailandensis}
Length = 352
Score = 27.3 bits (61), Expect = 9.2
Identities = 9/42 (21%), Positives = 18/42 (42%), Gaps = 6/42 (14%)
Query: 221 DWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL 262
++ A V+D+ G+G +L + R+ L +L
Sbjct: 176 VFARART------VIDLAGGHGTYLAQVLRRHPQLTGQIWDL 211
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.138 0.428
Gapped
Lambda K H
0.267 0.0852 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,551,484
Number of extensions: 397205
Number of successful extensions: 1155
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1113
Number of HSP's successfully gapped: 60
Length of query: 416
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 320
Effective length of database: 4,021,377
Effective search space: 1286840640
Effective search space used: 1286840640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (25.9 bits)