RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 014919
(416 letters)
>d1phpa_ c.86.1.1 (A:) Phosphoglycerate kinase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 394
Score = 105 bits (262), Expect = 1e-25
Identities = 54/210 (25%), Positives = 100/210 (47%), Gaps = 5/210 (2%)
Query: 6 EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
++P+ AIIGG + +K + L + D LI G +++ + ALG V L+E+ +
Sbjct: 186 DRPFTAIIGGAKVKDKIGVIDNLLEKVDNLIIGGGLAYTFVKALGHDVGKSLLEEDKIEL 245
Query: 66 ASDLIQFARDKHITILYPKDFWCT-KIHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITS 124
A ++ A++K + P D + + ++ P IP W +DIGP++ E
Sbjct: 246 AKSFMEKAKEKGVRFYMPVDVVVADRFANDANTKVVPIDAIPADWSALDIGPKTRELYRD 305
Query: 125 TITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVSSS 184
I + K V+W GP+ +++G + +++ +VIG A +
Sbjct: 306 VIRESKLVVWNGPMGVFEMDAFAHGTKA---IAEALAEALDTYSVIGGGDSAAAVEKFGL 362
Query: 185 IFGLNMVES-GSAVWEFLKGRMLPGVSALD 213
++ + + G A EF++G+ LPGV AL+
Sbjct: 363 ADKMDHISTGGGASLEFMEGKQLPGVVALE 392
>d1vpea_ c.86.1.1 (A:) Phosphoglycerate kinase {Thermotoga maritima
[TaxId: 2336]}
Length = 398
Score = 98.6 bits (245), Expect = 3e-23
Identities = 56/210 (26%), Positives = 102/210 (48%), Gaps = 4/210 (1%)
Query: 6 EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
EKPY ++GG + +K + L + D ++ G M F + ALG V VE+ D
Sbjct: 185 EKPYVVVLGGAKVSDKIGVITNLMEKADRILIGGAMMFTFLKALGKEVGSSRVEEDKIDL 244
Query: 66 ASDLIQFARDKHITILYPKDFWCTKI--HHPNQVEIFPSHGIPDGWEPVDIGPRSVEEIT 123
A +L++ A++K + I+ P D + + + GIP+GW +DIGP ++E
Sbjct: 245 AKELVEKAKEKGVEIVLPVDAVIAQKIEPGVEKKVVRIDDGIPEGWMGLDIGPETIELFK 304
Query: 124 STITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVSS 183
++ K V+W GP+ ++ G ++ + +++ +TV+G A
Sbjct: 305 QKLSDAKTVVWNGPMGVFEIDDFAEGTKQVALAIAALTEKGA-ITVVGGGDSAAAVNKFG 363
Query: 184 SIFGLNMVES-GSAVWEFLKGRMLPGVSAL 212
+ V + G A EFL+G+ LPG++++
Sbjct: 364 LEDKFSHVSTGGGASLEFLEGKELPGIASM 393
>d1ltka_ c.86.1.1 (A:) Phosphoglycerate kinase {Malaria parasite
(Plasmodium falciparum) [TaxId: 5833]}
Length = 417
Score = 94.8 bits (235), Expect = 6e-22
Identities = 51/216 (23%), Positives = 93/216 (43%), Gaps = 13/216 (6%)
Query: 6 EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQ-IMHALGLPVPPELVEKGAND 64
++P AI+GG + +K + L + D +I G M++ + + L ++ +
Sbjct: 206 QRPLLAILGGAKVSDKIQLIKNLLDKVDRMIIGGGMAYTFKKVLNNMKIGTSLFDEAGSK 265
Query: 65 AASDLIQFARDKHITILYPKDFWCTK--IHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEI 122
++++ A+ K++ I P DF ++ N + GIPD W +D GP+S+E
Sbjct: 266 IVGEIMEKAKAKNVQIFLPVDFKIADNFDNNANTKFVTDEEGIPDNWMGLDAGPKSIENY 325
Query: 123 TSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVS 182
I K VIW GP ++ G+ + ++ +V++ V G + +
Sbjct: 326 KDVILTSKTVIWNGPQGVFEMPNFAKGSIECLNLVVEVTKKGAITIVGGGDTASLVEQ-- 383
Query: 183 SSIFGLN-----MVESGSAVWEFLKGRMLPGVSALD 213
+ G A E L+G+ LPGV AL
Sbjct: 384 ---QNKKNEISHVSTGGGASLELLEGKELPGVLALS 416
>d16pka_ c.86.1.1 (A:) Phosphoglycerate kinase {Trypanosoma brucei
[TaxId: 5691]}
Length = 415
Score = 93.7 bits (232), Expect = 2e-21
Identities = 60/209 (28%), Positives = 103/209 (49%), Gaps = 2/209 (0%)
Query: 7 KPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAA 66
+P AI+GG + +K L + R D L+ G M++ + A G + E+ + A
Sbjct: 205 RPLVAIVGGAKVSDKIQLLDNMLQRIDYLLIGGAMAYTFLKAQGYSIGKSKCEESKLEFA 264
Query: 67 SDLIQFARDKHITILYPKDFWC-TKIHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITST 125
L++ A D+ + ++ P D C T+ + I IP+G +DIGP+++E+ T
Sbjct: 265 RSLLKKAEDRKVQVILPIDHVCHTEFKAVDSPLITEDQNIPEGHMALDIGPKTIEKYVQT 324
Query: 126 ITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVSSSI 185
I KCK IW GP+ YS G + + + + +++IG + A++S
Sbjct: 325 IGKCKSAIWNGPMGVFEMVPYSKGTFAIAKAMGRGTHEHGLMSIIGGGDSASAAELSGEA 384
Query: 186 FGLNMVES-GSAVWEFLKGRMLPGVSALD 213
++ V + G A E L+G+ LPGV+ LD
Sbjct: 385 KRMSHVSTGGGASLELLEGKTLPGVTVLD 413
>d1qpga_ c.86.1.1 (A:) Phosphoglycerate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 415
Score = 90.1 bits (223), Expect = 2e-20
Identities = 55/212 (25%), Positives = 93/212 (43%), Gaps = 5/212 (2%)
Query: 6 EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQ-IMHALGLPVPPELVEKGAND 64
+P+ AI+GG + +K + L + D +I G M+F + + +K +
Sbjct: 202 TRPFLAILGGAKVADKIQLIDNLLDKVDSIIIGGGMAFTFKKVLENTEIGDSIFDKAGAE 261
Query: 65 AASDLIQFARDKHITILYPKDFWCTKIH--HPNQVEIFPSHGIPDGWEPVDIGPRSVEEI 122
L++ A+ K + ++ P DF N + GIP GW+ +D GP S +
Sbjct: 262 IVPKLMEKAKAKGVEVVLPVDFIIADAFSADANTKTVTDKEGIPAGWQGLDNGPESRKLF 321
Query: 123 TSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKVS 182
+T+ K K ++W GP +++ G L + K S N +IG +AK
Sbjct: 322 AATVAKAKTIVWNGPPGVFEFEKFAAGTKALLDEVVK-SSAAGNTVIIGGGDTATVAKKY 380
Query: 183 SSIFGLNMV-ESGSAVWEFLKGRMLPGVSALD 213
++ V G A E L+G+ LPGV+ L
Sbjct: 381 GVTDKISHVSTGGGASLELLEGKELPGVAFLS 412
>d1v6sa_ c.86.1.1 (A:) Phosphoglycerate kinase {Thermus thermophilus
[TaxId: 274]}
Length = 390
Score = 86.3 bits (213), Expect = 3e-19
Identities = 57/213 (26%), Positives = 91/213 (42%), Gaps = 5/213 (2%)
Query: 3 KLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGA 62
K E+PYA ++GG + +K + L R D L+ G M+F + ALG V LVE+
Sbjct: 180 KDPERPYAVVLGGAKVSDKIGVIESLLPRIDRLLIGGAMAFTFLKALGGEVGRSLVEEDR 239
Query: 63 NDAASDLIQFARDKHITILYPKDFWCTKIHHPN-QVEIFPSHGIPDGWEPVDIGPRSVEE 121
D A DL+ A + + P+D + + +FP+ IP + +DIGP++ E
Sbjct: 240 LDLAKDLLGRAEALGVRVYLPEDVVAAERIEAGVETRVFPARAIPVPYMGLDIGPKTREA 299
Query: 122 ITSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIGSMACKAIAKV 181
+ + V W GP+ + G + ++ TV+G A
Sbjct: 300 FARALEGARTVFWNGPMGVFEVPPFDEGTLA---VGQAIAALEGAFTVVGGGDSVAAVNR 356
Query: 182 SSSIFGLNMVES-GSAVWEFLKGRMLPGVSALD 213
V + G A EFL+ LPG+ L+
Sbjct: 357 LGLKERFGHVSTGGGASLEFLEKGTLPGLEVLE 389
>d1hdia_ c.86.1.1 (A:) Phosphoglycerate kinase {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 413
Score = 78.6 bits (193), Expect = 1e-16
Identities = 53/214 (24%), Positives = 98/214 (45%), Gaps = 9/214 (4%)
Query: 6 EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHAL-GLPVPPELVEKGAND 64
E+P+ AI+GG + +K ++ + + + +I G M+F + L + + L ++
Sbjct: 201 ERPFLAILGGAKVADKIQLINNMLDKVNEMIIGGGMAFTFLKVLNNMEIGTSLFDEAGKK 260
Query: 65 AASDLIQFARDKHITILYPKDFWCTKIH--HPNQVEIFPSHGIPDGWEPVDIGPRSVEEI 122
+L+ A + I P DF + + GIP GW +D GP+S +
Sbjct: 261 IVKNLMSKAAANGVKITLPVDFVTADKFDEQAKIGQATVASGIPAGWMGLDCGPKSSAKY 320
Query: 123 TSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCKVSQGTCNVTVIG---SMACKAIA 179
+ + + K+++W GPV ++ G L + K + C +T+IG + C A
Sbjct: 321 SEAVARAKQIVWNGPVGVFEWEAFAQGTKALMDEVVKATSRGC-ITIIGGGDTATCCAKW 379
Query: 180 KVSSSIFGLNMVESGSAVWEFLKGRMLPGVSALD 213
++ ++ G A E L+G++LPGV AL
Sbjct: 380 NTEDNVSHVST--GGGASLELLEGKVLPGVDALS 411
>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase
TrmB {Bacillus subtilis [TaxId: 1423]}
Length = 204
Score = 72.6 bits (177), Expect = 2e-15
Identities = 34/205 (16%), Positives = 83/205 (40%), Gaps = 17/205 (8%)
Query: 211 ALDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLE----LVTHC 266
A+ + W+ + + P+ +++G+G G F+ GMA++ D+N++G+E ++
Sbjct: 11 AISNPADYKGKWNTVFGND-NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTA 69
Query: 267 RDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSL 326
++ S N + +A + PG++ V + +P + + R+
Sbjct: 70 VQKVKDSEAQNVKLLNIDADTLTDVF---EPGEVKRVYLNFSDPWPKKRHEKRRLTYSHF 126
Query: 327 VEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENS 386
++ +++ G + ++D + + F EYG T +
Sbjct: 127 LKKYEEVMGKGGSIHFKTDNRGLFEYSLKSFSEYGL---------LLTYVSLDLHNSNLE 177
Query: 387 FGVRSDWEQHVIDRGAPMYRLMLSK 411
+ +++E+ G P+YR +
Sbjct: 178 GNIMTEYEEKFSALGQPIYRAEVEW 202
>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase
TrmB {Streptococcus pneumoniae [TaxId: 1313]}
Length = 204
Score = 65.3 bits (158), Expect = 6e-13
Identities = 31/197 (15%), Positives = 78/197 (39%), Gaps = 11/197 (5%)
Query: 212 LDRAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ 271
+ W + + P+ V++GSG G F+ GMA++ D+N++G+++
Sbjct: 14 VLNPLEAKAKWRDLFGNDN-PIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYAL 72
Query: 272 LSGITNGYFIATNATSTFRSIVASYP-GKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAV 330
+ G + + G++ + + +P + + R+ ++ ++
Sbjct: 73 DKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTF 132
Query: 331 SDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENSFGVR 390
+L +G++ ++D + F +YG + D + V
Sbjct: 133 KRILPENGEIHFKTDNRGLFEYSLVSFSQYGMKLNGVWLDL---------HASDFEGNVM 183
Query: 391 SDWEQHVIDRGAPMYRL 407
+++EQ ++G +YR+
Sbjct: 184 TEYEQKFSNKGQVIYRV 200
>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia
coli [TaxId: 562]}
Length = 268
Score = 30.7 bits (68), Expect = 0.26
Identities = 10/47 (21%), Positives = 17/47 (36%)
Query: 220 IDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLELVTHC 266
+ D V+DIG G G + A ++ GL++
Sbjct: 74 VAQLRERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVA 120
>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing
protein METT10D {Human (Homo sapiens) [TaxId: 9606]}
Length = 250
Score = 29.0 bits (64), Expect = 0.95
Identities = 14/147 (9%), Positives = 36/147 (24%), Gaps = 6/147 (4%)
Query: 227 HDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEL----VTHCRDSLQLSGITNGYFI- 281
+DIG+G + FL E+ + + +++ + +++ +
Sbjct: 58 DKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVV 117
Query: 282 -ATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKV 340
T ++ P S ++
Sbjct: 118 KVPQKTLLMDALKEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEI 177
Query: 341 FLQSDIEEVMLRMKQQFLEYGKGKLVL 367
+ E + R+ L+ K
Sbjct: 178 MAEGGELEFVKRIIHDSLQLKKRLRWY 204
>d1khba2 c.109.1.1 (A:10-259) Cytosolic phosphoenolpyruvate
carboxykinase (GTP-hydrolyzing) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 250
Score = 29.0 bits (65), Expect = 1.0
Identities = 16/64 (25%), Positives = 24/64 (37%), Gaps = 11/64 (17%)
Query: 190 MVESGSAVWEFL-----------KGRMLPGVSALDRAFPFDIDWSAAYHDPAQPLVVDIG 238
M G+ V E L G LP L +P + + + H P + ++ G
Sbjct: 164 MTRMGTPVLEALGDGEFVKCLHSVGCPLPLQKPLVNNWPCNPELTLIAHLPDRREIISFG 223
Query: 239 SGNG 242
SG G
Sbjct: 224 SGYG 227
>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone
methyltransferase Dot1l {Human (Homo sapiens) [TaxId:
9606]}
Length = 328
Score = 28.7 bits (63), Expect = 1.5
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 234 VVDIGSGNGLFLLGMARKRKDLNFLGLELVTHC 266
VD+GSG G +L +A + G+E
Sbjct: 155 FVDLGSGVGQVVLQVAAATNCKHHYGVEKADIP 187
>d1e4ea2 d.142.1.1 (A:132-342) D-alanine:D-lactate ligase VanA,
C-domain {Enterococcus faecium [TaxId: 1352]}
Length = 211
Score = 28.2 bits (61), Expect = 1.8
Identities = 8/127 (6%), Positives = 21/127 (16%), Gaps = 1/127 (0%)
Query: 41 MSFQIMHALGLPVPP-ELVEKGANDAASDLIQFARDKHITILYPKDFWCTKIHHPNQVEI 99
+++ + G+ P ++ K A+ K I
Sbjct: 4 LTYIVAKNAGIATPAFWVINKDDRPVAATFTYPVFVKPARSGSSFGVKKVNSADELDYAI 63
Query: 100 FPSHGIPDGWEPVDIGPRSVEEITSTITKCKKVIWVGPVKFRFSSQYSNGASKLTGMLCK 159
+ V+ + +
Sbjct: 64 ESARQYDSKILIEQAVSGCEVGCAVLGNSAALVVGEVDQIRLQYGIFRIHQEVEPEKGSE 123
Query: 160 VSQGTCN 166
+ T
Sbjct: 124 NAVITVP 130
>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 292
Score = 27.6 bits (60), Expect = 2.8
Identities = 9/114 (7%), Positives = 37/114 (32%), Gaps = 4/114 (3%)
Query: 234 VVDIGSGNGLFLLGMARKRKDLNFLGL--ELVTHCRDSLQLSGITNGYFIATNATSTFRS 291
V+D+ G G+ + + + + + +++ + + + + +
Sbjct: 60 VLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLT 119
Query: 292 IVASYPGKLILVSIQCPNPDFN--RPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 343
+ P ++ C F + R ++ ++ ++ G + +
Sbjct: 120 LDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVID 173
>d2cw9a1 d.17.4.13 (A:270-451) Translocase of inner mitochondrial
membrane TIMM44 (TIM44), C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 182
Score = 26.9 bits (59), Expect = 3.5
Identities = 10/32 (31%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
Query: 324 RSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQ 355
R+L + V+DLL G +F ++++ EV+ + +
Sbjct: 8 RALTDKVTDLL---GGLFSKTEMSEVLTEILR 36
>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus
jannaschii [TaxId: 2190]}
Length = 230
Score = 26.6 bits (58), Expect = 4.8
Identities = 5/38 (13%), Positives = 11/38 (28%)
Query: 234 VVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQ 271
++ +G+ G +A +E L
Sbjct: 78 ILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELL 115
>d2ooja1 b.159.2.1 (A:2-134) Hypothetical protein SO1590 {Shewanella
oneidensis [TaxId: 70863]}
Length = 133
Score = 25.9 bits (57), Expect = 5.5
Identities = 12/69 (17%), Positives = 18/69 (26%), Gaps = 10/69 (14%)
Query: 238 GSGNGLFLLGMARKRKDLNFLGLELVT------HCRDSLQLSGITNGYFIATNATSTFRS 291
G L M + ++ +E V LQ GI
Sbjct: 43 ARSQGEMLSAMTAVKGSAGYVAIEQVVGKLCGRQGSFVLQHFGI----MTDGQNRLHLEV 98
Query: 292 IVASYPGKL 300
+ S G+L
Sbjct: 99 VPHSGAGEL 107
>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia
carotovora [TaxId: 554]}
Length = 225
Score = 26.4 bits (57), Expect = 5.7
Identities = 5/22 (22%), Positives = 11/22 (50%)
Query: 234 VVDIGSGNGLFLLGMARKRKDL 255
++++GS G F + D+
Sbjct: 24 LLELGSFKGDFTSRLQEHFNDI 45
>d1uc8a2 d.142.1.7 (A:89-280) Lysine biosynthesis enzyme LysX
ATP-binding domain {Thermus thermophilus [TaxId: 274]}
Length = 192
Score = 26.1 bits (56), Expect = 6.5
Identities = 5/26 (19%), Positives = 9/26 (34%)
Query: 40 LMSFQIMHALGLPVPPELVEKGANDA 65
+ + GLP P + +A
Sbjct: 2 WATSVALAKAGLPQPKTALATDREEA 27
>d1p2za2 b.121.2.2 (A:651-962) Adenovirus hexon {Human adenovirus
type 2 [TaxId: 10515]}
Length = 312
Score = 25.9 bits (57), Expect = 9.0
Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 4/46 (8%)
Query: 103 HGIPDGWEPVDIGPRSVEEITSTITKCKKVIWVGPVKFRFSSQYSN 148
P IG +V+ IT C + +W P FSS + +
Sbjct: 205 QAYPANVPYPLIGKTAVDSITQKKFLCDRTLWRIP----FSSNFMS 246
>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain
{Thermus aquaticus [TaxId: 271]}
Length = 223
Score = 25.8 bits (55), Expect = 9.0
Identities = 14/89 (15%), Positives = 31/89 (34%), Gaps = 1/89 (1%)
Query: 234 VVDIGSGNGLFLLGMARKRKD-LNFLGLELVTHCRDSLQLSGITNGYFIATNATSTFRSI 292
V++ +G FL F+G+E+ D + F+ F I
Sbjct: 23 VLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPPWAEGILADFLLWEPGEAFDLI 82
Query: 293 VASYPGKLILVSIQCPNPDFNRPEHRWRM 321
+ + P ++ + + P F + ++
Sbjct: 83 LGNPPYGIVGEASKYPIHVFKAVKDLYKK 111
>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli
[TaxId: 562]}
Length = 245
Score = 26.1 bits (56), Expect = 9.0
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 234 VVDIGSGNGLFLLGMARK 251
++D+GSG+G L AR
Sbjct: 37 ILDLGSGSGEMLCTWARD 54
>d1sh0a_ e.8.1.4 (A:) Viral RNA polymerase {Norwalk virus [TaxId:
11983]}
Length = 502
Score = 26.1 bits (57), Expect = 9.5
Identities = 9/77 (11%), Positives = 23/77 (29%), Gaps = 16/77 (20%)
Query: 32 CDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAASDLIQFARDKHITILYPKDFWCTKI 91
D + ++ A +++F+ + H+ + +D +
Sbjct: 236 ADYSRWDSTQQRAVLAAA----------------LEIMVKFSSEPHLAQVVAEDLLSPSV 279
Query: 92 HHPNQVEIFPSHGIPDG 108
I + G+P G
Sbjct: 280 VDVGDFTISINEGLPSG 296
>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa
(Medicago sativa) [TaxId: 3879]}
Length = 244
Score = 25.8 bits (56), Expect = 9.9
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 234 VVDIGSGNGLFLLGMARKRKDLNFLGLELVTHCRDSLQLSGIT 276
+VD+G G+G L + K + + +L ++ LSGI
Sbjct: 85 LVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLSGIE 127
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.138 0.428
Gapped
Lambda K H
0.267 0.0452 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,602,985
Number of extensions: 75203
Number of successful extensions: 226
Number of sequences better than 10.0: 1
Number of HSP's gapped: 217
Number of HSP's successfully gapped: 34
Length of query: 416
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 328
Effective length of database: 1,199,356
Effective search space: 393388768
Effective search space used: 393388768
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.3 bits)