Your job contains 1 sequence.
>014920
MDLLKQELLRKRQGLAEETGGRRVFKRSEIEQKQIQKLREQEKREQEAKLLRQNNSHNST
ASSANSNSVSSARTTTATTASGASATATKTLTNEQNIDNLNLPKQEVIRRLRLLKQPITL
FGEDDDARLERLKYVLKAGLFEVDSDMTEGQTNDFLRDIVELRKRQKTGILSERKRKDRE
EGGGEDGEGGGGDEELSADGGSSGVDMDKDLKRMKANFDELCEEDKILVFFKRLLNEWNQ
ELNEMPEAEKRTAKGKSMVATFKQCARYLNPLFKFCRKKVLPDDIRQALMLMVNCCMKRD
YLAAMDHYIRLAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQSVKRL
MTFCQRRYPTMPSKAVEFNSLANGSDLQSLLAEETISGSNQSSEERLRLMPAPKES
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 014920
(416 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2007589 - symbol:AT1G03140 species:3702 "Arabi... 1298 2.1e-132 1
UNIPROTKB|E1C1V4 - symbol:PRPF18 "Uncharacterized protein... 443 1.6e-54 3
UNIPROTKB|Q99633 - symbol:PRPF18 "Pre-mRNA-splicing facto... 442 5.4e-54 3
MGI|MGI:1914479 - symbol:Prpf18 "PRP18 pre-mRNA processin... 442 5.4e-54 3
UNIPROTKB|Q2HJ41 - symbol:PRPF18 "Pre-mRNA-splicing facto... 442 6.9e-54 3
UNIPROTKB|E2RP50 - symbol:PRPF18 "Uncharacterized protein... 442 6.9e-54 3
RGD|708550 - symbol:Prpf18 "PRP18 pre-mRNA processing fac... 443 8.7e-54 3
ZFIN|ZDB-GENE-040704-45 - symbol:prpf18 "PRP18 pre-mRNA p... 433 5.2e-52 3
DICTYBASE|DDB_G0274555 - symbol:prp18 "putative RNA splic... 510 6.7e-49 1
UNIPROTKB|E2RGL1 - symbol:PRPF18 "Uncharacterized protein... 442 1.1e-48 2
UNIPROTKB|I3LU26 - symbol:LOC100737145 "Uncharacterized p... 442 6.8e-47 2
FB|FBgn0027784 - symbol:Prp18 "Prp18" species:7227 "Droso... 388 3.7e-46 3
UNIPROTKB|G4MP19 - symbol:MGG_05681 "Uncharacterized prot... 328 1.0e-37 3
POMBASE|SPCC126.14 - symbol:prp18 "U5 snRNP-associated pr... 265 3.6e-36 3
WB|WBGene00009320 - symbol:F32B6.3 species:6239 "Caenorha... 364 2.0e-33 1
ASPGD|ASPL0000055078 - symbol:AN0632 species:162425 "Emer... 298 6.2e-33 2
CGD|CAL0005277 - symbol:orf19.2112 species:5476 "Candida ... 186 5.6e-13 1
SGD|S000003238 - symbol:PRP18 "Splicing factor and compon... 178 2.4e-12 1
UNIPROTKB|Q5T9P7 - symbol:PRPF18 "Pre-mRNA-splicing facto... 131 3.4e-11 2
>TAIR|locus:2007589 [details] [associations]
symbol:AT1G03140 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0005681 "spliceosomal
complex" evidence=IEA;ISS] [GO:0008380 "RNA splicing"
evidence=IEA;ISS] InterPro:IPR003648 InterPro:IPR004098
Pfam:PF02840 SMART:SM00500 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0008380 GO:GO:0005681 EMBL:AC006550 eggNOG:NOG313018
HOGENOM:HOG000242389 KO:K12817 OMA:RGFRNDF Gene3D:1.20.940.10
InterPro:IPR014906 Pfam:PF08799 SUPFAM:SSF47938 HSSP:P33411
EMBL:AF360230 EMBL:AY051020 IPI:IPI00535592 PIR:E86162
RefSeq:NP_563676.1 UniGene:At.11122 ProteinModelPortal:Q9SA55
SMR:Q9SA55 IntAct:Q9SA55 PaxDb:Q9SA55 PRIDE:Q9SA55
EnsemblPlants:AT1G03140.1 GeneID:839567 KEGG:ath:AT1G03140
TAIR:At1g03140 InParanoid:Q9SA55 PhylomeDB:Q9SA55
ProtClustDB:CLSN2682420 ArrayExpress:Q9SA55 Genevestigator:Q9SA55
Uniprot:Q9SA55
Length = 420
Score = 1298 (462.0 bits), Expect = 2.1e-132, P = 2.1e-132
Identities = 262/420 (62%), Positives = 297/420 (70%)
Query: 1 MDLLKQELLRKRQGLAEETGGRRVFKRSXXXXXXXXXXXXXXXXXXXXXXLRQXXXXXXX 60
MDLL++E+L+KR+ LAEE+GG++ FKRS R+
Sbjct: 1 MDLLREEILKKRKSLAEESGGKKFFKRSEIEQKKIQKLREEERREHELKAQRRAAAAASG 60
Query: 61 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNEQNI--DNLNLPKQEVIRRLRLLKQPI 118
+ + + +NL LP+QEVIRRLR LKQP+
Sbjct: 61 GDGKSSGSAPGSSNAATSASSKSSASDAAAIADSKALTDENLILPRQEVIRRLRFLKQPM 120
Query: 119 TLFGEDDDARLERLKYVLKAGLFEVDSDMTEGQTNDFLRDIVELRKRQKTGILSERKRKD 178
TLFGEDD +RL+RLKYVLK GLFEVDSDMTEGQTNDFLRDI EL+KRQK+G++ +RKRK
Sbjct: 121 TLFGEDDQSRLDRLKYVLKEGLFEVDSDMTEGQTNDFLRDIAELKKRQKSGMMGDRKRKS 180
Query: 179 RXXXXXXXXXXXXXXXXXXXXXXXXXVDMDKDLKRMKANFDELCEEDKILVFFKRLLNEW 238
R VD DKD+KR+KANF++LC+EDKILVF+K+LL EW
Sbjct: 181 RDERGRDEGDRGETREDELSGGESSDVDADKDMKRLKANFEDLCDEDKILVFYKKLLIEW 240
Query: 239 NQELNEMPEAEKRTAKGKSMVATFKQCARYLNPLFKFCRKKVLPDDIRQALMLMVNCCMK 298
QEL+ M E+RTAKGK MVATFKQCARYL PLF CRKK LP DIRQALM+MVN C+K
Sbjct: 241 KQELDAMENTERRTAKGKQMVATFKQCARYLVPLFNLCRKKGLPADIRQALMVMVNHCIK 300
Query: 299 RDYLAAMDHYIRLAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQSVK 358
RDYLAAMDHYI+LAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQSVK
Sbjct: 301 RDYLAAMDHYIKLAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQSVK 360
Query: 359 RLMTFCQRRYPTMPSKAVEFNSLANGSDLQSLLAEETISGSN--QSSEERLRLMPAPKES 416
RLMTFCQRRYPTMPSKAVEFNSLANGSDLQSLLAEE G N Q SEERLRLMP+ ES
Sbjct: 361 RLMTFCQRRYPTMPSKAVEFNSLANGSDLQSLLAEERFFGGNREQVSEERLRLMPSQSES 420
>UNIPROTKB|E1C1V4 [details] [associations]
symbol:PRPF18 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR003648
InterPro:IPR004098 Pfam:PF02840 SMART:SM00500 GO:GO:0008380
GO:GO:0005681 CTD:8559 GeneTree:ENSGT00390000015073 KO:K12817
OMA:RGFRNDF Gene3D:1.20.940.10 InterPro:IPR014906 Pfam:PF08799
SUPFAM:SSF47938 EMBL:AADN02060887 EMBL:AADN02060888
EMBL:AADN02060889 EMBL:AADN02060890 IPI:IPI00589655
RefSeq:XP_417229.1 UniGene:Gga.5605 PRIDE:E1C1V4
Ensembl:ENSGALT00000010789 GeneID:419036 KEGG:gga:419036
NextBio:20822148 Uniprot:E1C1V4
Length = 342
Score = 443 (161.0 bits), Expect = 1.6e-54, Sum P(3) = 1.6e-54
Identities = 84/163 (51%), Positives = 115/163 (70%)
Query: 219 DELCEEDKILVFFKRLLNEWNQELNEMPEAEKRTAKGKSMVATFKQCARYLNPLFKFCRK 278
D+ + D I F K LL W +ELN + KR +GK AT KQ YL PLF+ RK
Sbjct: 180 DDHYDMDIITKFLKFLLGVWAKELNAREDYVKRGVQGKLNSATQKQTESYLRPLFRKLRK 239
Query: 279 KVLPDDIRQALMLMVNCCMKRDYLAAMDHYIRLAIGNAPWPIGVTMVGIHERSAREKIYT 338
+ LP DI++++ ++ ++R+Y+ A D Y+++AIGNAPWPIGVTMVGIH R+ REKI++
Sbjct: 240 RTLPADIKESITDIIKFMLQREYVKANDAYLQMAIGNAPWPIGVTMVGIHARTGREKIFS 299
Query: 339 NSVAHIMNDETTRKYLQSVKRLMTFCQRRYPTMPSKAVEFNSL 381
VAH++NDET RKY+Q +KRLMT CQ+ +PT PSK VE+N+L
Sbjct: 300 KHVAHVLNDETQRKYIQGLKRLMTICQKHFPTDPSKCVEYNAL 342
Score = 82 (33.9 bits), Expect = 1.6e-54, Sum P(3) = 1.6e-54
Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 100 LNLPKQEVIRRLRLLKQPITLFGEDDDARLERLKYV 135
+ L +QEVIRRLR +P+ LFGE D +RL+ +
Sbjct: 77 MTLSRQEVIRRLRERGEPVRLFGETDYDAFQRLRKI 112
Score = 67 (28.6 bits), Expect = 1.6e-54, Sum P(3) = 1.6e-54
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 1 MDLLKQELLRKRQGLAEET---GGRRVFKRS 28
MD+LK+E+ RKRQ L ++ G ++ FKRS
Sbjct: 1 MDILKREISRKRQQLEDKELVGGNKKYFKRS 31
>UNIPROTKB|Q99633 [details] [associations]
symbol:PRPF18 "Pre-mRNA-splicing factor 18" species:9606
"Homo sapiens" [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005634 "nucleus" evidence=TAS] InterPro:IPR003648
InterPro:IPR004098 Pfam:PF02840 SMART:SM00500 GO:GO:0008380
GO:GO:0016607 GO:GO:0006397 GO:GO:0005681 EMBL:CH471072
GO:GO:0019870 EMBL:AL157392 CTD:8559 eggNOG:NOG313018
HOGENOM:HOG000242389 HOVERGEN:HBG053696 KO:K12817 OMA:RGFRNDF
OrthoDB:EOG4J6RR4 Gene3D:1.20.940.10 InterPro:IPR014906
Pfam:PF08799 SUPFAM:SSF47938 EMBL:U51990 EMBL:BC000794
EMBL:BC002572 IPI:IPI00021146 IPI:IPI00024021 RefSeq:NP_003666.1
UniGene:Hs.729158 PDB:2DK4 PDBsum:2DK4 ProteinModelPortal:Q99633
SMR:Q99633 IntAct:Q99633 STRING:Q99633 PhosphoSite:Q99633
DMDM:37082244 PaxDb:Q99633 PRIDE:Q99633 DNASU:8559
Ensembl:ENST00000378572 GeneID:8559 KEGG:hsa:8559 UCSC:uc001imp.3
GeneCards:GC10P013628 HGNC:HGNC:17351 HPA:HPA037599 MIM:604993
neXtProt:NX_Q99633 PharmGKB:PA38449 InParanoid:Q99633
PhylomeDB:Q99633 ChiTaRS:PRPF18 EvolutionaryTrace:Q99633
GenomeRNAi:8559 NextBio:32085 ArrayExpress:Q99633 Bgee:Q99633
CleanEx:HS_PRPF18 Genevestigator:Q99633 GermOnline:ENSG00000165630
Uniprot:Q99633
Length = 342
Score = 442 (160.7 bits), Expect = 5.4e-54, Sum P(3) = 5.4e-54
Identities = 84/163 (51%), Positives = 116/163 (71%)
Query: 219 DELCEEDKILVFFKRLLNEWNQELNEMPEAEKRTAKGKSMVATFKQCARYLNPLFKFCRK 278
D+ + D I F K LL W +ELN + KR+ +GK AT KQ YL PLF+ RK
Sbjct: 180 DDHKDMDIITKFLKFLLGVWAKELNAREDYVKRSVQGKLNSATQKQTESYLRPLFRKLRK 239
Query: 279 KVLPDDIRQALMLMVNCCMKRDYLAAMDHYIRLAIGNAPWPIGVTMVGIHERSAREKIYT 338
+ LP DI++++ ++ ++R+Y+ A D Y+++AIGNAPWPIGVTMVGIH R+ REKI++
Sbjct: 240 RNLPADIKESITDIIKFMLQREYVKANDAYLQMAIGNAPWPIGVTMVGIHARTGREKIFS 299
Query: 339 NSVAHIMNDETTRKYLQSVKRLMTFCQRRYPTMPSKAVEFNSL 381
VAH++NDET RKY+Q +KRLMT CQ+ +PT PSK VE+N+L
Sbjct: 300 KHVAHVLNDETQRKYIQGLKRLMTICQKHFPTDPSKCVEYNAL 342
Score = 83 (34.3 bits), Expect = 5.4e-54, Sum P(3) = 5.4e-54
Identities = 18/36 (50%), Positives = 24/36 (66%)
Query: 100 LNLPKQEVIRRLRLLKQPITLFGEDDDARLERLKYV 135
+ L +QEVIRRLR +PI LFGE D +RL+ +
Sbjct: 77 MTLSRQEVIRRLRERGEPIRLFGETDYDAFQRLRKI 112
Score = 62 (26.9 bits), Expect = 5.4e-54, Sum P(3) = 5.4e-54
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 1 MDLLKQELLRKRQGLAEETG----GRRVFKRS 28
MD+LK E+LRKRQ L E+ ++ FKRS
Sbjct: 1 MDILKSEILRKRQ-LVEDRNLLVENKKYFKRS 31
>MGI|MGI:1914479 [details] [associations]
symbol:Prpf18 "PRP18 pre-mRNA processing factor 18 homolog
(yeast)" species:10090 "Mus musculus" [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0019870 "potassium channel inhibitor
activity" evidence=ISO] InterPro:IPR003648 InterPro:IPR004098
Pfam:PF02840 SMART:SM00500 MGI:MGI:1914479 GO:GO:0008380
GO:GO:0016607 GO:GO:0006397 GO:GO:0005681 GO:GO:0019870 CTD:8559
eggNOG:NOG313018 GeneTree:ENSGT00390000015073 HOGENOM:HOG000242389
HOVERGEN:HBG053696 KO:K12817 OMA:RGFRNDF OrthoDB:EOG4J6RR4
Gene3D:1.20.940.10 InterPro:IPR014906 Pfam:PF08799 SUPFAM:SSF47938
ChiTaRS:PRPF18 EMBL:AK035073 EMBL:AK036668 EMBL:AK135707
EMBL:AK135890 EMBL:AK139720 EMBL:BC004573 EMBL:BC058631
IPI:IPI00222907 IPI:IPI00340720 RefSeq:NP_080321.2 UniGene:Mm.38529
ProteinModelPortal:Q8BM39 SMR:Q8BM39 STRING:Q8BM39
PhosphoSite:Q8BM39 PaxDb:Q8BM39 PRIDE:Q8BM39
Ensembl:ENSMUST00000035721 Ensembl:ENSMUST00000152362 GeneID:67229
KEGG:mmu:67229 InParanoid:Q8BM39 NextBio:323950 Bgee:Q8BM39
Genevestigator:Q8BM39 GermOnline:ENSMUSG00000039449 Uniprot:Q8BM39
Length = 342
Score = 442 (160.7 bits), Expect = 5.4e-54, Sum P(3) = 5.4e-54
Identities = 84/163 (51%), Positives = 116/163 (71%)
Query: 219 DELCEEDKILVFFKRLLNEWNQELNEMPEAEKRTAKGKSMVATFKQCARYLNPLFKFCRK 278
D+ + D I F K LL W +ELN + KR+ +GK AT KQ YL PLF+ RK
Sbjct: 180 DDHKDMDIITKFLKFLLGVWAKELNAREDYVKRSVQGKLNSATQKQTESYLRPLFRKLRK 239
Query: 279 KVLPDDIRQALMLMVNCCMKRDYLAAMDHYIRLAIGNAPWPIGVTMVGIHERSAREKIYT 338
+ LP DI++++ ++ ++R+Y+ A D Y+++AIGNAPWPIGVTMVGIH R+ REKI++
Sbjct: 240 RNLPADIKESITDIIKFMLQREYVKANDAYLQMAIGNAPWPIGVTMVGIHARTGREKIFS 299
Query: 339 NSVAHIMNDETTRKYLQSVKRLMTFCQRRYPTMPSKAVEFNSL 381
VAH++NDET RKY+Q +KRLMT CQ+ +PT PSK VE+N+L
Sbjct: 300 KHVAHVLNDETQRKYIQGLKRLMTICQKHFPTDPSKCVEYNAL 342
Score = 83 (34.3 bits), Expect = 5.4e-54, Sum P(3) = 5.4e-54
Identities = 18/36 (50%), Positives = 24/36 (66%)
Query: 100 LNLPKQEVIRRLRLLKQPITLFGEDDDARLERLKYV 135
+ L +QEVIRRLR +PI LFGE D +RL+ +
Sbjct: 77 MTLSRQEVIRRLRERGEPIRLFGETDYDAFQRLRKI 112
Score = 62 (26.9 bits), Expect = 5.4e-54, Sum P(3) = 5.4e-54
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 1 MDLLKQELLRKRQGLAEETG----GRRVFKRS 28
MD+LK E+LRKRQ L E+ ++ FKRS
Sbjct: 1 MDILKSEILRKRQ-LVEDRNLLVENKKYFKRS 31
>UNIPROTKB|Q2HJ41 [details] [associations]
symbol:PRPF18 "Pre-mRNA-splicing factor 18" species:9913
"Bos taurus" [GO:0016607 "nuclear speck" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
InterPro:IPR003648 InterPro:IPR004098 Pfam:PF02840 SMART:SM00500
GO:GO:0008380 GO:GO:0016607 GO:GO:0006397 GO:GO:0005681
EMBL:BC113323 IPI:IPI00691161 RefSeq:NP_001068791.1
UniGene:Bt.66458 ProteinModelPortal:Q2HJ41 SMR:Q2HJ41 STRING:Q2HJ41
PRIDE:Q2HJ41 Ensembl:ENSBTAT00000022912 GeneID:507639
KEGG:bta:507639 CTD:8559 eggNOG:NOG313018
GeneTree:ENSGT00390000015073 HOGENOM:HOG000242389
HOVERGEN:HBG053696 InParanoid:Q2HJ41 KO:K12817 OMA:RGFRNDF
OrthoDB:EOG4J6RR4 NextBio:20868152 Gene3D:1.20.940.10
InterPro:IPR014906 Pfam:PF08799 SUPFAM:SSF47938 Uniprot:Q2HJ41
Length = 342
Score = 442 (160.7 bits), Expect = 6.9e-54, Sum P(3) = 6.9e-54
Identities = 84/163 (51%), Positives = 116/163 (71%)
Query: 219 DELCEEDKILVFFKRLLNEWNQELNEMPEAEKRTAKGKSMVATFKQCARYLNPLFKFCRK 278
D+ + D I F K LL W +ELN + KR+ +GK AT KQ YL PLF+ RK
Sbjct: 180 DDHKDMDIITKFLKFLLGVWAKELNAREDYVKRSVQGKLNSATQKQTESYLRPLFRKLRK 239
Query: 279 KVLPDDIRQALMLMVNCCMKRDYLAAMDHYIRLAIGNAPWPIGVTMVGIHERSAREKIYT 338
+ LP DI++++ ++ ++R+Y+ A D Y+++AIGNAPWPIGVTMVGIH R+ REKI++
Sbjct: 240 RNLPADIKESITDIIKFMLQREYVKANDAYLQMAIGNAPWPIGVTMVGIHARTGREKIFS 299
Query: 339 NSVAHIMNDETTRKYLQSVKRLMTFCQRRYPTMPSKAVEFNSL 381
VAH++NDET RKY+Q +KRLMT CQ+ +PT PSK VE+N+L
Sbjct: 300 KHVAHVLNDETQRKYIQGLKRLMTICQKHFPTDPSKCVEYNAL 342
Score = 83 (34.3 bits), Expect = 6.9e-54, Sum P(3) = 6.9e-54
Identities = 18/36 (50%), Positives = 24/36 (66%)
Query: 100 LNLPKQEVIRRLRLLKQPITLFGEDDDARLERLKYV 135
+ L +QEVIRRLR +PI LFGE D +RL+ +
Sbjct: 77 MTLSRQEVIRRLRERGEPIRLFGETDYDAFQRLRKI 112
Score = 61 (26.5 bits), Expect = 6.9e-54, Sum P(3) = 6.9e-54
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 1 MDLLKQELLRKRQGLAEETG----GRRVFKRS 28
MD+LK E+LRKRQ L E+ ++ FKRS
Sbjct: 1 MDVLKSEILRKRQ-LVEDRNLLVENKKYFKRS 31
>UNIPROTKB|E2RP50 [details] [associations]
symbol:PRPF18 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] InterPro:IPR003648
InterPro:IPR004098 Pfam:PF02840 SMART:SM00500 GO:GO:0008380
GO:GO:0005681 CTD:8559 GeneTree:ENSGT00390000015073 KO:K12817
Gene3D:1.20.940.10 InterPro:IPR014906 Pfam:PF08799 SUPFAM:SSF47938
EMBL:AAEX03001263 RefSeq:XP_535182.2 ProteinModelPortal:E2RP50
Ensembl:ENSCAFT00000037850 GeneID:477998 KEGG:cfa:477998
NextBio:20853387 Uniprot:E2RP50
Length = 342
Score = 442 (160.7 bits), Expect = 6.9e-54, Sum P(3) = 6.9e-54
Identities = 84/163 (51%), Positives = 116/163 (71%)
Query: 219 DELCEEDKILVFFKRLLNEWNQELNEMPEAEKRTAKGKSMVATFKQCARYLNPLFKFCRK 278
D+ + D I F K LL W +ELN + KR+ +GK AT KQ YL PLF+ RK
Sbjct: 180 DDHKDMDIITKFLKFLLGVWAKELNAREDYVKRSVQGKLNSATQKQTESYLRPLFRKLRK 239
Query: 279 KVLPDDIRQALMLMVNCCMKRDYLAAMDHYIRLAIGNAPWPIGVTMVGIHERSAREKIYT 338
+ LP DI++++ ++ ++R+Y+ A D Y+++AIGNAPWPIGVTMVGIH R+ REKI++
Sbjct: 240 RNLPADIKESITDIIKFMLQREYVKANDAYLQMAIGNAPWPIGVTMVGIHARTGREKIFS 299
Query: 339 NSVAHIMNDETTRKYLQSVKRLMTFCQRRYPTMPSKAVEFNSL 381
VAH++NDET RKY+Q +KRLMT CQ+ +PT PSK VE+N+L
Sbjct: 300 KHVAHVLNDETQRKYIQGLKRLMTICQKHFPTDPSKCVEYNAL 342
Score = 83 (34.3 bits), Expect = 6.9e-54, Sum P(3) = 6.9e-54
Identities = 18/36 (50%), Positives = 24/36 (66%)
Query: 100 LNLPKQEVIRRLRLLKQPITLFGEDDDARLERLKYV 135
+ L +QEVIRRLR +PI LFGE D +RL+ +
Sbjct: 77 MTLSRQEVIRRLRERGEPIRLFGETDYDAFQRLRKI 112
Score = 61 (26.5 bits), Expect = 6.9e-54, Sum P(3) = 6.9e-54
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 1 MDLLKQELLRKRQGLAEETG----GRRVFKRS 28
MD+LK E+LRKRQ L E+ ++ FKRS
Sbjct: 1 MDVLKSEILRKRQ-LVEDRNLLVENKKYFKRS 31
>RGD|708550 [details] [associations]
symbol:Prpf18 "PRP18 pre-mRNA processing factor 18 homolog (S.
cerevisiae)" species:10116 "Rattus norvegicus" [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] [GO:0019870 "potassium channel
inhibitor activity" evidence=IMP] InterPro:IPR003648
InterPro:IPR004098 Pfam:PF02840 SMART:SM00500 RGD:708550
GO:GO:0008380 GO:GO:0016607 GO:GO:0006397 GO:GO:0005681
GO:GO:0019870 CTD:8559 eggNOG:NOG313018 HOGENOM:HOG000242389
HOVERGEN:HBG053696 KO:K12817 OrthoDB:EOG4J6RR4 Gene3D:1.20.940.10
InterPro:IPR014906 Pfam:PF08799 SUPFAM:SSF47938 EMBL:AF244920
IPI:IPI00202461 PIR:JC7358 RefSeq:NP_612532.1 UniGene:Rn.203914
ProteinModelPortal:Q9JKB8 SMR:Q9JKB8 STRING:Q9JKB8 GeneID:171552
KEGG:rno:171552 UCSC:RGD:708550 InParanoid:Q9JKB8 NextBio:622537
ArrayExpress:Q9JKB8 Genevestigator:Q9JKB8
GermOnline:ENSRNOG00000018396 Uniprot:Q9JKB8
Length = 342
Score = 443 (161.0 bits), Expect = 8.7e-54, Sum P(3) = 8.7e-54
Identities = 84/163 (51%), Positives = 116/163 (71%)
Query: 219 DELCEEDKILVFFKRLLNEWNQELNEMPEAEKRTAKGKSMVATFKQCARYLNPLFKFCRK 278
D+ + D I F K LL W +ELN + KR+ +GK AT KQ YL PLF+ RK
Sbjct: 180 DDHKDMDIITKFLKFLLGVWAKELNSREDYVKRSVQGKLNSATQKQTESYLRPLFRKLRK 239
Query: 279 KVLPDDIRQALMLMVNCCMKRDYLAAMDHYIRLAIGNAPWPIGVTMVGIHERSAREKIYT 338
+ LP DI++++ ++ ++R+Y+ A D Y+++AIGNAPWPIGVTMVGIH R+ REKI++
Sbjct: 240 RNLPADIKESITDIIKFMLQREYVKANDAYLQMAIGNAPWPIGVTMVGIHARTGREKIFS 299
Query: 339 NSVAHIMNDETTRKYLQSVKRLMTFCQRRYPTMPSKAVEFNSL 381
VAH++NDET RKY+Q +KRLMT CQ+ +PT PSK VE+N+L
Sbjct: 300 KHVAHVLNDETQRKYIQGLKRLMTICQKHFPTDPSKCVEYNAL 342
Score = 80 (33.2 bits), Expect = 8.7e-54, Sum P(3) = 8.7e-54
Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 100 LNLPKQEVIRRLRLLKQPITLFGEDDDARLERLKYV 135
+ L +QEVIRRLR +P+ LFGE D +RL+ +
Sbjct: 77 MTLSRQEVIRRLRERGEPMRLFGETDYDAFQRLRKI 112
Score = 62 (26.9 bits), Expect = 8.7e-54, Sum P(3) = 8.7e-54
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 1 MDLLKQELLRKRQGLAEETG----GRRVFKRS 28
MD+LK E+LRKRQ L E+ ++ FKRS
Sbjct: 1 MDILKSEILRKRQ-LVEDRNLLVENKKYFKRS 31
>ZFIN|ZDB-GENE-040704-45 [details] [associations]
symbol:prpf18 "PRP18 pre-mRNA processing factor 18
homolog (yeast)" species:7955 "Danio rerio" [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA]
InterPro:IPR003648 InterPro:IPR004098 Pfam:PF02840 SMART:SM00500
ZFIN:ZDB-GENE-040704-45 GO:GO:0008380 GO:GO:0016607 GO:GO:0006397
GO:GO:0005681 CTD:8559 eggNOG:NOG313018
GeneTree:ENSGT00390000015073 HOGENOM:HOG000242389
HOVERGEN:HBG053696 KO:K12817 OrthoDB:EOG4J6RR4 Gene3D:1.20.940.10
InterPro:IPR014906 Pfam:PF08799 SUPFAM:SSF47938 EMBL:BX248392
EMBL:BC074081 IPI:IPI00735004 RefSeq:NP_001002204.1
UniGene:Dr.78187 ProteinModelPortal:Q6GMH0 SMR:Q6GMH0 STRING:Q6GMH0
Ensembl:ENSDART00000081154 GeneID:431751 KEGG:dre:431751
InParanoid:Q6GMH0 NextBio:20830984 Bgee:Q6GMH0 Uniprot:Q6GMH0
Length = 342
Score = 433 (157.5 bits), Expect = 5.2e-52, Sum P(3) = 5.2e-52
Identities = 82/165 (49%), Positives = 117/165 (70%)
Query: 217 NFDELCEEDKILVFFKRLLNEWNQELNEMPEAEKRTAKGKSMVATFKQCARYLNPLFKFC 276
N +++ + D I + LL W ++LN + KR+ +GK AT KQ YL PLF+
Sbjct: 178 NGNDVRDMDIINKVLRFLLGVWAKDLNSREDHIKRSVQGKLASATQKQTESYLEPLFRKL 237
Query: 277 RKKVLPDDIRQALMLMVNCCMKRDYLAAMDHYIRLAIGNAPWPIGVTMVGIHERSAREKI 336
RKK LP DI++++ ++ ++R+Y+ A D Y+++AIGNAPWPIGVTMVGIH R+ REKI
Sbjct: 238 RKKNLPADIKESITDIIKFMLEREYVKANDAYLQMAIGNAPWPIGVTMVGIHARTGREKI 297
Query: 337 YTNSVAHIMNDETTRKYLQSVKRLMTFCQRRYPTMPSKAVEFNSL 381
++ VAH++NDET RKY+Q +KRLMT CQ+ +PT PSK VE+N+L
Sbjct: 298 FSKHVAHVLNDETQRKYIQGLKRLMTICQKHFPTDPSKCVEYNAL 342
Score = 84 (34.6 bits), Expect = 5.2e-52, Sum P(3) = 5.2e-52
Identities = 18/36 (50%), Positives = 24/36 (66%)
Query: 100 LNLPKQEVIRRLRLLKQPITLFGEDDDARLERLKYV 135
+ L +QEVIRRLR +PI LFGE D +RL+ +
Sbjct: 77 MTLSRQEVIRRLRERGEPIRLFGESDYDAFQRLRKI 112
Score = 51 (23.0 bits), Expect = 5.2e-52, Sum P(3) = 5.2e-52
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 1 MDLLKQELLRKRQGLAEET---GGRRVFKRS 28
MD+LK E+ RKR+ + E+ ++ FKR+
Sbjct: 1 MDILKAEIARKRKLIEEKELIDDSKKYFKRA 31
>DICTYBASE|DDB_G0274555 [details] [associations]
symbol:prp18 "putative RNA splicing factor"
species:44689 "Dictyostelium discoideum" [GO:0008380 "RNA splicing"
evidence=IEA;ISS] [GO:0005681 "spliceosomal complex"
evidence=IEA;ISS] [GO:0006397 "mRNA processing" evidence=ISS]
[GO:0000375 "RNA splicing, via transesterification reactions"
evidence=ISS] InterPro:IPR004098 Pfam:PF02840
dictyBase:DDB_G0274555 GO:GO:0006397 GenomeReviews:CM000151_GR
GO:GO:0005681 EMBL:AAFI02000012 EMBL:AC123513 GO:GO:0005216
GO:GO:0000375 eggNOG:NOG313018 KO:K12817 Gene3D:1.20.940.10
InterPro:IPR014906 Pfam:PF08799 SUPFAM:SSF47938 RefSeq:XP_644033.1
ProteinModelPortal:Q8MML7 STRING:Q8MML7 EnsemblProtists:DDB0233422
GeneID:8619463 KEGG:ddi:DDB_G0274555 InParanoid:Q8MML7 OMA:APWPMGV
Uniprot:Q8MML7
Length = 389
Score = 510 (184.6 bits), Expect = 6.7e-49, P = 6.7e-49
Identities = 113/276 (40%), Positives = 162/276 (58%)
Query: 102 LPKQEVIRRLRLLKQPITLFGEDDDARLERLKYVLKAGLFEVDS-DMTEGQTNDFLRDIV 160
LP VI+RLR QPIT FGE R RLK L E D + T+G N+F +
Sbjct: 126 LPDIVVIQRLRERSQPITYFGETSIDRAMRLKK-----LEENDPIEYTQGD-NEFANILK 179
Query: 161 ELRKRQKTGILSERKRKDRXXXXXXXXXXXXXXXXXXXXXXXXXVDMDKDLKRMKANFDE 220
++ +R+ +K +D +++L+R++ + +
Sbjct: 180 QIEQRKM------KKHQDSADNEKEKEENENNDKKKQQQQQENEESEEQELERLRIDSSK 233
Query: 221 LCEEDKILVFFKRLLNEWNQELNEMPEAEKRTAKGKSMVATFKQCARYLNPLFKFCRKKV 280
C+E KIL F K LLN+W L + EK++ +GK AT+ QC ++ PLF R+K
Sbjct: 234 -CKESKILYFLKGLLNDWITNLENRSDDEKKSRQGKIAEATYYQCKSHIQPLFTSLREKT 292
Query: 281 LPDDIRQALMLMVNCCMKRDYLAAMDHYIRLAIGNAPWPIGVTMVGIHERSAREKIYTNS 340
L DI + + +V C R+Y+ A D Y+++AIGNAPWP+GVTMVGIHERS+REKI++N
Sbjct: 293 LSIDILEHINEIVEFCKSREYVRANDEYLQMAIGNAPWPMGVTMVGIHERSSREKIFSNQ 352
Query: 341 VAHIMNDETTRKYLQSVKRLMTFCQRRYPTMPSKAV 376
VAH++NDE RKY+Q+VKRLMTFCQ +YPT PS+++
Sbjct: 353 VAHVLNDEMQRKYIQAVKRLMTFCQTQYPTAPSRSI 388
>UNIPROTKB|E2RGL1 [details] [associations]
symbol:PRPF18 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] InterPro:IPR003648
InterPro:IPR004098 Pfam:PF02840 SMART:SM00500 GO:GO:0008380
GO:GO:0005681 GeneTree:ENSGT00390000015073 OMA:RGFRNDF
Gene3D:1.20.940.10 InterPro:IPR014906 Pfam:PF08799 SUPFAM:SSF47938
EMBL:AAEX03001263 Ensembl:ENSCAFT00000007616 Uniprot:E2RGL1
Length = 343
Score = 442 (160.7 bits), Expect = 1.1e-48, Sum P(2) = 1.1e-48
Identities = 84/163 (51%), Positives = 116/163 (71%)
Query: 219 DELCEEDKILVFFKRLLNEWNQELNEMPEAEKRTAKGKSMVATFKQCARYLNPLFKFCRK 278
D+ + D I F K LL W +ELN + KR+ +GK AT KQ YL PLF+ RK
Sbjct: 181 DDHKDMDIITKFLKFLLGVWAKELNAREDYVKRSVQGKLNSATQKQTESYLRPLFRKLRK 240
Query: 279 KVLPDDIRQALMLMVNCCMKRDYLAAMDHYIRLAIGNAPWPIGVTMVGIHERSAREKIYT 338
+ LP DI++++ ++ ++R+Y+ A D Y+++AIGNAPWPIGVTMVGIH R+ REKI++
Sbjct: 241 RNLPADIKESITDIIKFMLQREYVKANDAYLQMAIGNAPWPIGVTMVGIHARTGREKIFS 300
Query: 339 NSVAHIMNDETTRKYLQSVKRLMTFCQRRYPTMPSKAVEFNSL 381
VAH++NDET RKY+Q +KRLMT CQ+ +PT PSK VE+N+L
Sbjct: 301 KHVAHVLNDETQRKYIQGLKRLMTICQKHFPTDPSKCVEYNAL 343
Score = 83 (34.3 bits), Expect = 1.1e-48, Sum P(2) = 1.1e-48
Identities = 18/36 (50%), Positives = 24/36 (66%)
Query: 100 LNLPKQEVIRRLRLLKQPITLFGEDDDARLERLKYV 135
+ L +QEVIRRLR +PI LFGE D +RL+ +
Sbjct: 78 MTLSRQEVIRRLRERGEPIRLFGETDYDAFQRLRKI 113
>UNIPROTKB|I3LU26 [details] [associations]
symbol:LOC100737145 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] InterPro:IPR003648
InterPro:IPR004098 Pfam:PF02840 SMART:SM00500 GO:GO:0008380
GO:GO:0005681 GeneTree:ENSGT00390000015073 Gene3D:1.20.940.10
InterPro:IPR014906 Pfam:PF08799 SUPFAM:SSF47938 OMA:APWPMGV
EMBL:FP089500 Ensembl:ENSSSCT00000024330 Uniprot:I3LU26
Length = 259
Score = 442 (160.7 bits), Expect = 6.8e-47, Sum P(2) = 6.8e-47
Identities = 84/163 (51%), Positives = 116/163 (71%)
Query: 219 DELCEEDKILVFFKRLLNEWNQELNEMPEAEKRTAKGKSMVATFKQCARYLNPLFKFCRK 278
D+ + D I F K LL W +ELN + KR+ +GK AT KQ YL PLF+ RK
Sbjct: 97 DDHKDMDIITKFLKFLLGVWAKELNAREDYVKRSVQGKLNSATQKQTESYLRPLFRKLRK 156
Query: 279 KVLPDDIRQALMLMVNCCMKRDYLAAMDHYIRLAIGNAPWPIGVTMVGIHERSAREKIYT 338
+ LP DI++++ ++ ++R+Y+ A D Y+++AIGNAPWPIGVTMVGIH R+ REKI++
Sbjct: 157 RNLPADIKESITDIIKFMLQREYVKANDAYLQMAIGNAPWPIGVTMVGIHARTGREKIFS 216
Query: 339 NSVAHIMNDETTRKYLQSVKRLMTFCQRRYPTMPSKAVEFNSL 381
VAH++NDET RKY+Q +KRLMT CQ+ +PT PSK VE+N+L
Sbjct: 217 KHVAHVLNDETQRKYIQGLKRLMTICQKHFPTDPSKCVEYNAL 259
Score = 66 (28.3 bits), Expect = 6.8e-47, Sum P(2) = 6.8e-47
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 107 VIRRLRLLKQPITLFGEDDDARLERLKYV 135
VIRRLR +PI LFGE D +RL+ +
Sbjct: 1 VIRRLRERGEPIRLFGETDYDAFQRLRKI 29
>FB|FBgn0027784 [details] [associations]
symbol:Prp18 "Prp18" species:7227 "Drosophila melanogaster"
[GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0008266
"poly(U) RNA binding" evidence=NAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISS;NAS] InterPro:IPR003648
InterPro:IPR004098 Pfam:PF02840 SMART:SM00500 EMBL:AE014297
GO:GO:0005681 GO:GO:0000398 eggNOG:NOG313018
GeneTree:ENSGT00390000015073 KO:K12817 OMA:RGFRNDF
Gene3D:1.20.940.10 InterPro:IPR014906 Pfam:PF08799 SUPFAM:SSF47938
EMBL:AF170829 EMBL:AY118327 RefSeq:NP_650776.1 UniGene:Dm.23329
HSSP:P33411 SMR:Q9V437 IntAct:Q9V437 MINT:MINT-285912 STRING:Q9V437
EnsemblMetazoa:FBtr0083717 GeneID:42285 KEGG:dme:Dmel_CG6011
UCSC:CG6011-RA CTD:42285 FlyBase:FBgn0027784 InParanoid:Q9V437
OrthoDB:EOG431ZDP GenomeRNAi:42285 NextBio:828040 Uniprot:Q9V437
Length = 340
Score = 388 (141.6 bits), Expect = 3.7e-46, Sum P(3) = 3.7e-46
Identities = 77/174 (44%), Positives = 109/174 (62%)
Query: 209 KDLKRMKANF--DELCEEDKILVFFKRLLNEWNQELNEMPEAEKRTAKGKSMVATFKQCA 266
+ ++ M AN ++ + D I+ LL WN ++ + EK + K K + Q
Sbjct: 162 ESIQTMAANMGRNKDYDMDVIITLLTFLLKLWNDQIANYSKHEKMSTKVKMTRVIYTQTK 221
Query: 267 RYLNPLFKFCRKKVLPDDIRQALMLMVNCCMKRDYLAAMDHYIRLAIGNAPWPIGVTMVG 326
Y+ PLF+ + LP+DI +L + + R+Y+ A D Y+ +AIGNAPWPIGVTMVG
Sbjct: 222 EYVKPLFRKLKHHTLPEDILDSLRDICKHLLNRNYITASDAYLEMAIGNAPWPIGVTMVG 281
Query: 327 IHERSAREKIYTNSVAHIMNDETTRKYLQSVKRLMTFCQRRYPTMPSKAVEFNS 380
IH R+ REKI++ +VAH+MNDET RKY+Q +KRLMT CQ +PT PSK VE+ S
Sbjct: 282 IHARTGREKIFSKNVAHVMNDETQRKYIQGLKRLMTKCQEYFPTDPSKCVEYVS 335
Score = 80 (33.2 bits), Expect = 3.7e-46, Sum P(3) = 3.7e-46
Identities = 18/37 (48%), Positives = 24/37 (64%)
Query: 98 DNLN-LPKQEVIRRLRLLKQPITLFGEDDDARLERLK 133
D N LP+ EVIRRLR +PI +FGE + +RL+
Sbjct: 69 DGQNILPRTEVIRRLRERGEPILIFGETEPEAFDRLR 105
Score = 44 (20.5 bits), Expect = 3.7e-46, Sum P(3) = 3.7e-46
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 1 MDLLKQELLRKRQGLAE 17
MD+LK E+ RKR+ L +
Sbjct: 1 MDILKAEIARKRKLLEQ 17
Score = 41 (19.5 bits), Expect = 1.3e-38, Sum P(2) = 1.3e-38
Identities = 15/61 (24%), Positives = 30/61 (49%)
Query: 100 LNLPKQEVIRRLRLLKQPITL-----FGEDDDARLERLKYVL-KAGLFEVDSDMTEGQTN 153
+++ K E+ R+ +LL+Q + + D + + VL K G + +S +GQT
Sbjct: 1 MDILKAEIARKRKLLEQRQLVDEKKKYFRRGDLNAKNTEEVLQKVGYIKQESVEAQGQTT 60
Query: 154 D 154
+
Sbjct: 61 E 61
>UNIPROTKB|G4MP19 [details] [associations]
symbol:MGG_05681 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0003674 "molecular_function"
evidence=ND] InterPro:IPR004098 Pfam:PF02840 GO:GO:0008380
GO:GO:0005681 EMBL:CM001231 KO:K12817 Gene3D:1.20.940.10
InterPro:IPR014906 Pfam:PF08799 SUPFAM:SSF47938
RefSeq:XP_003710580.1 ProteinModelPortal:G4MP19 SMR:G4MP19
EnsemblFungi:MGG_05681T0 GeneID:2675969 KEGG:mgr:MGG_05681
Uniprot:G4MP19
Length = 360
Score = 328 (120.5 bits), Expect = 1.0e-37, Sum P(3) = 1.0e-37
Identities = 66/144 (45%), Positives = 90/144 (62%)
Query: 226 KILVFFKRLLNEWNQELNEMPEAEKRTAKGKSMVATFKQCARYLNPLFKFCRKKVLPDDI 285
K+ +F +L +W + L E E G +T Q L PLF+ K+ L D+I
Sbjct: 213 KLTSYFNMVLAQWEETLRR--EGEM---SGSKEYSTMAQSRDTLRPLFRKLEKRELDDEI 267
Query: 286 RQALMLMVNCCMKRDYLAAMDHYIRLAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIM 345
+A++ +V +R Y+ A D Y+RL+IG A WPIGVTMVGIHERSAREK++ H+M
Sbjct: 268 LKAILEIVQAAQERRYVDANDGYLRLSIGKAAWPIGVTMVGIHERSAREKLHNGEKGHVM 327
Query: 346 NDETTRKYLQSVKRLMTFCQRRYP 369
DE TRKYLQS+KR++TF Q R+P
Sbjct: 328 GDEVTRKYLQSIKRMLTFAQTRWP 351
Score = 63 (27.2 bits), Expect = 1.0e-37, Sum P(3) = 1.0e-37
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 104 KQEVIRRLRLLKQPITLFGEDDDARLERLK 133
+QE+ R LR P+ LFGE ARL RL+
Sbjct: 146 EQEIRRLLRERGLPVCLFGETRRARLRRLR 175
Score = 40 (19.1 bits), Expect = 1.0e-37, Sum P(3) = 1.0e-37
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 10 RKRQGLAEETGGRRVFKRS 28
+KRQ LAEE+ RR K +
Sbjct: 90 QKRQRLAEESRRRREEKEA 108
>POMBASE|SPCC126.14 [details] [associations]
symbol:prp18 "U5 snRNP-associated protein Prp18
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003674
"molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005681 "spliceosomal complex" evidence=ISO]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=ISO]
InterPro:IPR003648 InterPro:IPR004098 Pfam:PF02840 SMART:SM00500
PomBase:SPCC126.14 EMBL:CU329672 GenomeReviews:CU329672_GR
GO:GO:0005681 GO:GO:0045292 KO:K12817 Gene3D:1.20.940.10
InterPro:IPR014906 Pfam:PF08799 SUPFAM:SSF47938 EMBL:AB027939
PIR:T40918 RefSeq:NP_588457.1 ProteinModelPortal:O94406
STRING:O94406 EnsemblFungi:SPCC126.14.1 GeneID:2539357
KEGG:spo:SPCC126.14 OMA:CKQCARY OrthoDB:EOG4GJ2Z9 NextBio:20800522
Uniprot:O94406
Length = 343
Score = 265 (98.3 bits), Expect = 3.6e-36, Sum P(3) = 3.6e-36
Identities = 52/147 (35%), Positives = 88/147 (59%)
Query: 226 KILVFFKRLLNEWNQELNEMPEAEKRTAKGKSMVATFKQCARYLNPLFKFCRKKVLPDDI 285
+++ F + + W+ L+ +++ + + F+Q + L+ L + + L DDI
Sbjct: 193 QVVAFLQHGIRIWDNFLSSKSINSFESSESQMQLKIFRQAKQDLDVLIQLIVDEALNDDI 252
Query: 286 RQALMLMVNCCMKRDYLAAMDHYIRLAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIM 345
+++ + C K +++ A D Y+RL IGNAPWPIGVTMVGIHERSA +++ N ++I+
Sbjct: 253 FKSIAEICYRCQKHEFVKANDMYLRLTIGNAPWPIGVTMVGIHERSAHQRLQANPSSNIL 312
Query: 346 NDETTRKYLQSVKRLMTFCQRRYPTMP 372
DE RK LQ++KR +TF +R +P
Sbjct: 313 KDEKKRKCLQALKRFITFQERESSNLP 339
Score = 102 (41.0 bits), Expect = 3.6e-36, Sum P(3) = 3.6e-36
Identities = 26/61 (42%), Positives = 42/61 (68%)
Query: 98 DNLNLPKQEVIRRLRLLKQPITLFGEDDDARLERLKYVLK-AGLFEVDSDM-TEG-QTND 154
DNL L E+I +LR +K+PI LFGE ++A ++R +LK L E+++++ T+G +T D
Sbjct: 122 DNLTLT--EIIAKLREMKEPIRLFGESEEATIQRYYSLLKYKKLEEIENELLTKGVETID 179
Query: 155 F 155
F
Sbjct: 180 F 180
Score = 49 (22.3 bits), Expect = 3.6e-36, Sum P(3) = 3.6e-36
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 1 MDLLKQELLRKRQGL--AEETGGRRVFKR 27
MD LK+E+ RKR+ L E ++ F+R
Sbjct: 1 MDFLKEEIERKRRQLEGTSELPVKKAFRR 29
Score = 40 (19.1 bits), Expect = 1.3e-25, Sum P(2) = 1.3e-25
Identities = 7/16 (43%), Positives = 12/16 (75%)
Query: 154 DFLRDIVELRKRQKTG 169
DFL++ +E ++RQ G
Sbjct: 2 DFLKEEIERKRRQLEG 17
>WB|WBGene00009320 [details] [associations]
symbol:F32B6.3 species:6239 "Caenorhabditis elegans"
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0042127 "regulation of cell proliferation" evidence=IMP]
[GO:0040020 "regulation of meiosis" evidence=IMP] [GO:0007281 "germ
cell development" evidence=IMP] InterPro:IPR003648
InterPro:IPR004098 Pfam:PF02840 SMART:SM00500 GO:GO:0009792
GO:GO:0002009 GO:GO:0040010 GO:GO:0008380 GO:GO:0005681
GO:GO:0042127 GO:GO:0007281 GO:GO:0040020 EMBL:Z81074
eggNOG:NOG313018 GeneTree:ENSGT00390000015073 HOGENOM:HOG000242389
KO:K12817 OMA:RGFRNDF Gene3D:1.20.940.10 InterPro:IPR014906
Pfam:PF08799 SUPFAM:SSF47938 PIR:T21648 RefSeq:NP_501776.2
ProteinModelPortal:O45431 SMR:O45431 STRING:O45431 PaxDb:O45431
EnsemblMetazoa:F32B6.3 GeneID:177840 KEGG:cel:CELE_F32B6.3
UCSC:F32B6.3 CTD:177840 WormBase:F32B6.3 InParanoid:O45431
NextBio:898604 Uniprot:O45431
Length = 352
Score = 364 (133.2 bits), Expect = 2.0e-33, P = 2.0e-33
Identities = 101/288 (35%), Positives = 139/288 (48%)
Query: 93 NEQNIDNLNLPKQEVIRRLRLLKQPITLFGEDD-DARLERLKYVLKAGLFEVDSDMTEGQ 151
NE ID P E+ RLR PI LFGE D D R +RL + A D+ EG
Sbjct: 77 NESEIDE-KTPMSEIQTRLRQRNHPIMLFGETDIDVR-KRLHQLELA-----QPDLNEGW 129
Query: 152 TNDFLRDIVELRKRQKTGILSERKRKDRXXXXXXXXXXXXXXXXXXXXXXXXXVDMDKDL 211
N+ + + K ++ E + +D DL
Sbjct: 130 ENELQTAMKVIGKEMDKAVV-EGTADSATRHDIALPQGYEEDNWKNIEHNSTLLSVDDDL 188
Query: 212 KRMKANFDELCEEDKILVFFKRLLNEWNQELNEMPEAEKRTAKGKSMVATFKQCARYLNP 271
KR D C D IL + +L W ++LN+ P K+TA+G A KQ +L
Sbjct: 189 KR-----D--C--DIILSICRYILARWAKDLNDRPLDVKKTAQGMHEAAHHKQTMMHLKS 239
Query: 272 LFKFCRKKVLPDDIRQALMLMVNCCM-KRDYLAAMDHYIRLAIGNAPWPIGVTMVGIHER 330
L + +DIR L + + R+YL A + Y+ +AIGNAPWP+GVT GIH+R
Sbjct: 240 LMTSMERYNCNNDIRHHLAKICRLLVIDRNYLEANNAYMEMAIGNAPWPVGVTRSGIHQR 299
Query: 331 SAREKIYTNSVAHIMNDETTRKYLQSVKRLMTFCQRRYPTMPSKAVEF 378
K Y +++AH++NDET RKY+Q+ KRLMT Q +PT PSK+VEF
Sbjct: 300 PGSAKSYVSNIAHVLNDETQRKYIQAFKRLMTKMQEYFPTDPSKSVEF 347
>ASPGD|ASPL0000055078 [details] [associations]
symbol:AN0632 species:162425 "Emericella nidulans"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR004098
Pfam:PF02840 GO:GO:0008380 EMBL:BN001308 GO:GO:0005681
eggNOG:NOG313018 KO:K12817 Gene3D:1.20.940.10 InterPro:IPR014906
Pfam:PF08799 SUPFAM:SSF47938 OrthoDB:EOG4GJ2Z9 EMBL:AACD01000008
RefSeq:XP_658236.1 ProteinModelPortal:Q5BFP8 STRING:Q5BFP8
EnsemblFungi:CADANIAT00002045 GeneID:2876411 KEGG:ani:AN0632.2
HOGENOM:HOG000203250 OMA:KAAWPIG Uniprot:Q5BFP8
Length = 371
Score = 298 (110.0 bits), Expect = 6.2e-33, Sum P(2) = 6.2e-33
Identities = 59/141 (41%), Positives = 90/141 (63%)
Query: 230 FFKRLLNEWNQELNEMPEAEKRTAKGKSMVATFKQCARYLNPLFKFCRKKVLPDDIRQAL 289
+F +L+EW L + K++ G+ Q + PL + K + D++ Q +
Sbjct: 222 YFNMVLSEWEFALAKRDVTVKQSLHGRQAYNAMVQSRENMTPLIRKFEKGDIDDNVLQHI 281
Query: 290 MLMVNCCMKRDYLAAMDHYIRLAIGNAPWPIGVTMVGIHERSAREKIYT-NSVAHIMNDE 348
+ +++ +R Y+ A D Y+RL+IG A WPIGVTMVGIHERSAREK++ + AHI++DE
Sbjct: 282 VEIISKAQQRRYVDANDAYLRLSIGKAAWPIGVTMVGIHERSAREKLHQGDKQAHILSDE 341
Query: 349 TTRKYLQSVKRLMTFCQRRYP 369
+TRKYLQS+KR ++F Q R+P
Sbjct: 342 STRKYLQSIKRCLSFAQTRWP 362
Score = 77 (32.2 bits), Expect = 6.2e-33, Sum P(2) = 6.2e-33
Identities = 22/68 (32%), Positives = 36/68 (52%)
Query: 101 NLPKQEVIRRLRLLKQPITLFGEDDDARLERLKYVLKAGLFEVDSDMTEGQTNDFLRDIV 160
+L ++E+ ++LR + +P+ LFGE RL R K +L L EV M +G L +
Sbjct: 138 DLGEEELTKKLREMGEPVCLFGETHRDRLRRYKKLLARSL-EVQK-MFDGPIPTTLEPVP 195
Query: 161 ELRKRQKT 168
E+ + T
Sbjct: 196 EVEMKIPT 203
>CGD|CAL0005277 [details] [associations]
symbol:orf19.2112 species:5476 "Candida albicans" [GO:0005682
"U5 snRNP" evidence=IEA] [GO:0046540 "U4/U6 x U5 tri-snRNP complex"
evidence=IEA] [GO:0071048 "nuclear retention of unspliced pre-mRNA
at the site of transcription" evidence=IEA] [GO:0000350 "generation
of catalytic spliceosome for second transesterification step"
evidence=IEA] [GO:0000386 "second spliceosomal transesterification
activity" evidence=IEA] InterPro:IPR004098 Pfam:PF02840
CGD:CAL0005277 GO:GO:0008380 GO:GO:0005681 EMBL:AACQ01000031
EMBL:AACQ01000030 eggNOG:NOG313018 KO:K12817 Gene3D:1.20.940.10
SUPFAM:SSF47938 HOGENOM:HOG000000948 RefSeq:XP_719558.1
RefSeq:XP_719683.1 ProteinModelPortal:Q5ACV5 STRING:Q5ACV5
GeneID:3638722 GeneID:3638903 KEGG:cal:CaO19.2112
KEGG:cal:CaO19.9660 Uniprot:Q5ACV5
Length = 270
Score = 186 (70.5 bits), Expect = 5.6e-13, P = 5.6e-13
Identities = 51/144 (35%), Positives = 82/144 (56%)
Query: 226 KILVFFKRLLNEWNQELNEMPEAEKRTAKGKSMVATFKQCARYLNPLFKFCRKKVLPDDI 285
K+ V+ K+L+ +W + N+ E T K S+V L+K R L D+
Sbjct: 135 KLRVYIKQLIKQWQECDNDDQELLMETKK--SIVKL----------LYKL-RSHKLSLDM 181
Query: 286 RQALMLMVNCCMKRDYLAAMDHYIRLAIGNAPWPIGVTMVGIHERSAREKIY-TNSVAHI 344
+L +V + ++ A + Y++L+IGN WPIGV VGIH RSA KI ++V++I
Sbjct: 182 LISLSTIVYYIQQNEFNKANESYMKLSIGNVCWPIGVVNVGIHARSAASKITGASNVSNI 241
Query: 345 MNDETTRKYLQSVKRLMTFCQRRY 368
M E+TR+++ S+KRL++F +R Y
Sbjct: 242 MLSESTRRWIISIKRLISFKERVY 265
>SGD|S000003238 [details] [associations]
symbol:PRP18 "Splicing factor and component of snRNP U5"
species:4932 "Saccharomyces cerevisiae" [GO:0000386 "second
spliceosomal transesterification activity" evidence=IGI;IDA]
[GO:0000350 "generation of catalytic spliceosome for second
transesterification step" evidence=IDA] [GO:0005682 "U5 snRNP"
evidence=IDA] [GO:0046540 "U4/U6 x U5 tri-snRNP complex"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IMP] [GO:0005634 "nucleus" evidence=IEA] [GO:0071048
"nuclear retention of unspliced pre-mRNA at the site of
transcription" evidence=IGI;IMP] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] InterPro:IPR004098 Pfam:PF02840
SGD:S000003238 EMBL:BK006941 GO:GO:0005681 GO:GO:0005682
GO:GO:0046540 EMBL:L03536 EMBL:D50644 GO:GO:0071048 GO:GO:0000350
eggNOG:NOG313018 GeneTree:ENSGT00390000015073 KO:K12817
Gene3D:1.20.940.10 SUPFAM:SSF47938 OrthoDB:EOG4GJ2Z9 EMBL:U13016
EMBL:Z72791 PIR:S64295 RefSeq:NP_011520.2 PDB:1DVK PDBsum:1DVK
ProteinModelPortal:P33411 SMR:P33411 DIP:DIP-1110N IntAct:P33411
MINT:MINT-625303 STRING:P33411 PaxDb:P33411 EnsemblFungi:YGR006W
GeneID:852889 KEGG:sce:YGR006W CYGD:YGR006w HOGENOM:HOG000000948
OMA:HESANID EvolutionaryTrace:P33411 NextBio:972550
Genevestigator:P33411 GermOnline:YGR006W Uniprot:P33411
Length = 251
Score = 178 (67.7 bits), Expect = 2.4e-12, P = 2.4e-12
Identities = 41/104 (39%), Positives = 61/104 (58%)
Query: 262 FKQCARYLNPLF-KFCRKKVLPDDIRQALMLMVNCCMKRDYLAAMDHYIRLAIGNAPWPI 320
F + L PL + R ++ PD + ++ + ++ A+ Y++L+IGN WPI
Sbjct: 136 FLDTKKALFPLLLQLRRNQLAPDLLISLATVLYHLQQPKEINLAVQSYMKLSIGNVAWPI 195
Query: 321 GVTMVGIHERSAREKIYTN-SVAHIMNDETTRKYLQSVKRLMTF 363
GVT VGIH RSA KI + A+IM DE TR ++ S+KRL+TF
Sbjct: 196 GVTSVGIHARSAHSKIQGGRNAANIMIDERTRLWITSIKRLITF 239
>UNIPROTKB|Q5T9P7 [details] [associations]
symbol:PRPF18 "Pre-mRNA-splicing factor 18" species:9606
"Homo sapiens" [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR003648
InterPro:IPR004098 Pfam:PF02840 SMART:SM00500 GO:GO:0008380
GO:GO:0005681 EMBL:AL157392 HOGENOM:HOG000242389 HOVERGEN:HBG053696
Gene3D:1.20.940.10 InterPro:IPR014906 Pfam:PF08799 SUPFAM:SSF47938
UniGene:Hs.729158 HGNC:HGNC:17351 ChiTaRS:PRPF18 IPI:IPI00644341
SMR:Q5T9P7 Ensembl:ENST00000417658 Uniprot:Q5T9P7
Length = 249
Score = 131 (51.2 bits), Expect = 3.4e-11, Sum P(2) = 3.4e-11
Identities = 30/71 (42%), Positives = 42/71 (59%)
Query: 219 DELCEEDKILVFFKRLLNEWNQELNEMPEAEKRTAKGKSMVATFKQCARYLNPLFKFCRK 278
D+ + D I F K LL W +ELN + KR+ +GK AT KQ YL PLF+ RK
Sbjct: 174 DDHKDMDIITKFLKFLLGVWAKELNAREDYVKRSVQGKLNSATQKQTESYLRPLFRKLRK 233
Query: 279 KVLPDDIRQAL 289
+ LP DI++++
Sbjct: 234 RNLPADIKESI 244
Score = 83 (34.3 bits), Expect = 3.4e-11, Sum P(2) = 3.4e-11
Identities = 18/36 (50%), Positives = 24/36 (66%)
Query: 100 LNLPKQEVIRRLRLLKQPITLFGEDDDARLERLKYV 135
+ L +QEVIRRLR +PI LFGE D +RL+ +
Sbjct: 71 MTLSRQEVIRRLRERGEPIRLFGETDYDAFQRLRKI 106
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.135 0.382 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 416 330 0.00089 116 3 11 22 0.37 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 19
No. of states in DFA: 605 (64 KB)
Total size of DFA: 207 KB (2116 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 25.98u 0.20s 26.18t Elapsed: 00:00:01
Total cpu time: 25.98u 0.20s 26.18t Elapsed: 00:00:01
Start: Tue May 21 01:33:07 2013 End: Tue May 21 01:33:08 2013