BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 014920
         (416 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1DVK|A Chain A, Crystal Structure Of The Functional Domain Of The Splicing
           Factor Prp18
 pdb|1DVK|B Chain B, Crystal Structure Of The Functional Domain Of The Splicing
           Factor Prp18
          Length = 173

 Score = 71.2 bits (173), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 34/61 (55%), Positives = 44/61 (72%), Gaps = 1/61 (1%)

Query: 304 AMDHYIRLAIGNAPWPIGVTMVGIHERSAREKIYTN-SVAHIMNDETTRKYLQSVKRLMT 362
           A+  Y++L+IGN  WPIGVT VGIH RSA  KI    + A+IM DE TR ++ S+KRL+T
Sbjct: 101 AVQSYMKLSIGNVAWPIGVTSVGIHARSAHSKIQGGRNAANIMIDERTRLWITSIKRLIT 160

Query: 363 F 363
           F
Sbjct: 161 F 161


>pdb|2DK4|A Chain A, Solution Structure Of Splicing Factor Motif In Pre-Mrna
           Splicing Factor 18 (Hprp18)
          Length = 76

 Score = 36.2 bits (82), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 18/36 (50%), Positives = 24/36 (66%)

Query: 100 LNLPKQEVIRRLRLLKQPITLFGEDDDARLERLKYV 135
           + L +QEVIRRLR   +PI LFGE D    +RL+ +
Sbjct: 25  MTLSRQEVIRRLRERGEPIRLFGETDYDAFQRLRKI 60


>pdb|1UGO|A Chain A, Solution Structure Of The First Murine Bag Domain Of Bcl2-
           Associated Athanogene 5
          Length = 99

 Score = 34.7 bits (78), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 6/62 (9%)

Query: 105 QEVIRRLRLLKQPITLF-GEDDDARLERLKYVLKAGLFEVDSDMTEGQTNDFLRDIVELR 163
           QE+ R ++ ++  +  F G  DD   +RL+ +L   LFE+DS  TEG+      DI + R
Sbjct: 21  QEIQREVKAIEPQVVGFSGLSDDKNYKRLERILTKQLFEIDSVDTEGKG-----DIQQAR 75

Query: 164 KR 165
           KR
Sbjct: 76  KR 77


>pdb|1MZW|B Chain B, Crystal Structure Of A U4U6 SNRNP COMPLEX BETWEEN HUMAN
           Spliceosomal Cyclophilin H And A U4U6-60k Peptide
          Length = 31

 Score = 30.4 bits (67), Expect = 1.8,   Method: Composition-based stats.
 Identities = 17/31 (54%), Positives = 20/31 (64%)

Query: 106 EVIRRLRLLKQPITLFGEDDDARLERLKYVL 136
           EV   LR L +PITLFGE    R ERL+ +L
Sbjct: 1   EVKASLRALGEPITLFGEGPAERRERLRNIL 31


>pdb|2E7P|A Chain A, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
           Populus Tremula X Tremuloides
 pdb|2E7P|B Chain B, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
           Populus Tremula X Tremuloides
 pdb|2E7P|C Chain C, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
           Populus Tremula X Tremuloides
 pdb|2E7P|D Chain D, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
           Populus Tremula X Tremuloides
          Length = 116

 Score = 30.0 bits (66), Expect = 2.4,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 5/67 (7%)

Query: 333 REKIYTNSVAHIMNDETTRKYLQSVKRLMTFCQRRYPTMPSKAVEFNSLANGSDLQSLLA 392
           + K   +S   ++  +T   Y   VK+L+T     Y     K VE + L++GS LQS LA
Sbjct: 12  KAKELASSAPVVVFSKTYCGYCNRVKQLLTQVGASY-----KVVELDELSDGSQLQSALA 66

Query: 393 EETISGS 399
             T  G+
Sbjct: 67  HWTGRGT 73


>pdb|1Z7P|A Chain A, Solution Structure Of Reduced Glutaredoxin C1 From Populus
           Tremula X Tremuloides
 pdb|1Z7R|A Chain A, Solution Structure Of Reduced Glutaredoxin C1 From Populus
           Tremula X Tremuloides
          Length = 117

 Score = 30.0 bits (66), Expect = 2.4,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 5/67 (7%)

Query: 333 REKIYTNSVAHIMNDETTRKYLQSVKRLMTFCQRRYPTMPSKAVEFNSLANGSDLQSLLA 392
           + K   +S   ++  +T   Y   VK+L+T     Y     K VE + L++GS LQS LA
Sbjct: 13  KAKELASSAPVVVFSKTYCGYCNRVKQLLTQVGASY-----KVVELDELSDGSQLQSALA 67

Query: 393 EETISGS 399
             T  G+
Sbjct: 68  HWTGRGT 74


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.135    0.382 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,787,034
Number of Sequences: 62578
Number of extensions: 303415
Number of successful extensions: 670
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 664
Number of HSP's gapped (non-prelim): 7
length of query: 416
length of database: 14,973,337
effective HSP length: 101
effective length of query: 315
effective length of database: 8,652,959
effective search space: 2725682085
effective search space used: 2725682085
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)