BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014920
(416 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q99633|PRP18_HUMAN Pre-mRNA-splicing factor 18 OS=Homo sapiens GN=PRPF18 PE=1 SV=1
Length = 342
Score = 210 bits (535), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 148/411 (36%), Positives = 203/411 (49%), Gaps = 99/411 (24%)
Query: 1 MDLLKQELLRKRQGLAEE----TGGRRVFKRSEIEQKQIQKLREQEKREQEAKLLRQNNS 56
MD+LK E+LRKRQ L E+ ++ FKRSE+ K+E+EA R
Sbjct: 1 MDILKSEILRKRQ-LVEDRNLLVENKKYFKRSELA-----------KKEEEAYFER--CG 46
Query: 57 HNSTASSANSNSVSSARTTTATTASGASATATKTLTNEQNIDNLNLPKQEVIRRLRLLKQ 116
+ + ++S+ + T L +QEVIRRLR +
Sbjct: 47 YKIQPKEEDQKPLTSSNPVLELELAEEKLPMT-------------LSRQEVIRRLRERGE 93
Query: 117 PITLFGEDDDARLERLKYV--------------LKAGLFEVDSDMTEGQTNDFLRDIVEL 162
PI LFGE D +RL+ + LKA L ++D +L +IV
Sbjct: 94 PIRLFGETDYDAFQRLRKIEILTPEVNKGLRNDLKAALDKIDQQ--------YLNEIV-- 143
Query: 163 RKRQKTGILSERKRKDREEGGGEDGEGGGGD-----------EELSADGGSSGV-DMDKD 210
GG E GE + EEL A G S G D KD
Sbjct: 144 -------------------GGQEPGEEDTQNDLKVHEENTTIEELEALGESLGKGDDHKD 184
Query: 211 LKRMKANFDELCEEDKILVFFKRLLNEWNQELNEMPEAEKRTAKGKSMVATFKQCARYLN 270
+ D I F K LL W +ELN + KR+ +GK AT KQ YL
Sbjct: 185 M-------------DIITKFLKFLLGVWAKELNAREDYVKRSVQGKLNSATQKQTESYLR 231
Query: 271 PLFKFCRKKVLPDDIRQALMLMVNCCMKRDYLAAMDHYIRLAIGNAPWPIGVTMVGIHER 330
PLF+ RK+ LP DI++++ ++ ++R+Y+ A D Y+++AIGNAPWPIGVTMVGIH R
Sbjct: 232 PLFRKLRKRNLPADIKESITDIIKFMLQREYVKANDAYLQMAIGNAPWPIGVTMVGIHAR 291
Query: 331 SAREKIYTNSVAHIMNDETTRKYLQSVKRLMTFCQRRYPTMPSKAVEFNSL 381
+ REKI++ VAH++NDET RKY+Q +KRLMT CQ+ +PT PSK VE+N+L
Sbjct: 292 TGREKIFSKHVAHVLNDETQRKYIQGLKRLMTICQKHFPTDPSKCVEYNAL 342
>sp|Q5RE03|PRP18_PONAB Pre-mRNA-splicing factor 18 OS=Pongo abelii GN=PRPF18 PE=2 SV=1
Length = 342
Score = 210 bits (535), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 148/411 (36%), Positives = 203/411 (49%), Gaps = 99/411 (24%)
Query: 1 MDLLKQELLRKRQGLAEE----TGGRRVFKRSEIEQKQIQKLREQEKREQEAKLLRQNNS 56
MD+LK E+LRKRQ L E+ ++ FKRSE+ K+E+EA R
Sbjct: 1 MDILKSEILRKRQ-LVEDRNLLVENKKYFKRSELA-----------KKEEEAYFER--CG 46
Query: 57 HNSTASSANSNSVSSARTTTATTASGASATATKTLTNEQNIDNLNLPKQEVIRRLRLLKQ 116
+ + ++S+ + T L +QEVIRRLR +
Sbjct: 47 YRIQPKEEDQKPLTSSNPVLELELAEEKLPMT-------------LSRQEVIRRLRERGE 93
Query: 117 PITLFGEDDDARLERLKYV--------------LKAGLFEVDSDMTEGQTNDFLRDIVEL 162
PI LFGE D +RL+ + LKA L ++D +L +IV
Sbjct: 94 PIRLFGETDYDAFQRLRKIEILTPEVNKGLRNDLKAALDKIDQQ--------YLNEIV-- 143
Query: 163 RKRQKTGILSERKRKDREEGGGEDGEGGGGD-----------EELSADGGSSGV-DMDKD 210
GG E GE + EEL A G S G D KD
Sbjct: 144 -------------------GGQEPGEEDTQNDLKVHEENTTIEELEALGESLGKGDDHKD 184
Query: 211 LKRMKANFDELCEEDKILVFFKRLLNEWNQELNEMPEAEKRTAKGKSMVATFKQCARYLN 270
+ D I F K LL W +ELN + KR+ +GK AT KQ YL
Sbjct: 185 M-------------DIITKFLKFLLGVWAKELNAREDYVKRSVQGKLNSATQKQTESYLR 231
Query: 271 PLFKFCRKKVLPDDIRQALMLMVNCCMKRDYLAAMDHYIRLAIGNAPWPIGVTMVGIHER 330
PLF+ RK+ LP DI++++ ++ ++R+Y+ A D Y+++AIGNAPWPIGVTMVGIH R
Sbjct: 232 PLFRKLRKRNLPADIKESITDIIKFMLQREYVKANDAYLQMAIGNAPWPIGVTMVGIHAR 291
Query: 331 SAREKIYTNSVAHIMNDETTRKYLQSVKRLMTFCQRRYPTMPSKAVEFNSL 381
+ REKI++ VAH++NDET RKY+Q +KRLMT CQ+ +PT PSK VE+N+L
Sbjct: 292 TGREKIFSKHVAHVLNDETQRKYIQGLKRLMTICQKHFPTDPSKCVEYNAL 342
>sp|Q8BM39|PRP18_MOUSE Pre-mRNA-splicing factor 18 OS=Mus musculus GN=Prpf18 PE=1 SV=1
Length = 342
Score = 209 bits (531), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 148/411 (36%), Positives = 203/411 (49%), Gaps = 99/411 (24%)
Query: 1 MDLLKQELLRKRQGLAEE----TGGRRVFKRSEIEQKQIQKLREQEKREQEAKLLRQNNS 56
MD+LK E+LRKRQ L E+ ++ FKRSE+ +K E+EA R
Sbjct: 1 MDILKSEILRKRQ-LVEDRNLLVENKKYFKRSELARK-----------EEEAYYER--CG 46
Query: 57 HNSTASSANSNSVSSARTTTATTASGASATATKTLTNEQNIDNLNLPKQEVIRRLRLLKQ 116
+ + ++S+ + T L +QEVIRRLR +
Sbjct: 47 YKIQPKEDDQKPLTSSNPVLELELAEEKLPMT-------------LSRQEVIRRLRERGE 93
Query: 117 PITLFGEDDDARLERLKYV--------------LKAGLFEVDSDMTEGQTNDFLRDIVEL 162
PI LFGE D +RL+ + LKA L ++D +L +IV
Sbjct: 94 PIRLFGETDYDAFQRLRKIEILTPEVNKGLRNDLKAALDKIDQQ--------YLNEIV-- 143
Query: 163 RKRQKTGILSERKRKDREEGGGEDGEGGGGD-----------EELSADGGSSGV-DMDKD 210
GG E GE + EEL A G S G D KD
Sbjct: 144 -------------------GGQEPGEEDTQNDLKVHEENTTIEELEALGESLGKGDDHKD 184
Query: 211 LKRMKANFDELCEEDKILVFFKRLLNEWNQELNEMPEAEKRTAKGKSMVATFKQCARYLN 270
+ D I F K LL W +ELN + KR+ +GK AT KQ YL
Sbjct: 185 M-------------DIITKFLKFLLGVWAKELNAREDYVKRSVQGKLNSATQKQTESYLR 231
Query: 271 PLFKFCRKKVLPDDIRQALMLMVNCCMKRDYLAAMDHYIRLAIGNAPWPIGVTMVGIHER 330
PLF+ RK+ LP DI++++ ++ ++R+Y+ A D Y+++AIGNAPWPIGVTMVGIH R
Sbjct: 232 PLFRKLRKRNLPADIKESITDIIKFMLQREYVKANDAYLQMAIGNAPWPIGVTMVGIHAR 291
Query: 331 SAREKIYTNSVAHIMNDETTRKYLQSVKRLMTFCQRRYPTMPSKAVEFNSL 381
+ REKI++ VAH++NDET RKY+Q +KRLMT CQ+ +PT PSK VE+N+L
Sbjct: 292 TGREKIFSKHVAHVLNDETQRKYIQGLKRLMTICQKHFPTDPSKCVEYNAL 342
>sp|Q9JKB8|PRP18_RAT Pre-mRNA-splicing factor 18 OS=Rattus norvegicus GN=Prpf18 PE=2
SV=1
Length = 342
Score = 209 bits (531), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 147/411 (35%), Positives = 203/411 (49%), Gaps = 99/411 (24%)
Query: 1 MDLLKQELLRKRQGLAEE----TGGRRVFKRSEIEQKQIQKLREQEKREQEAKLLRQNNS 56
MD+LK E+LRKRQ L E+ ++ FKRSE+ K+E+EA R
Sbjct: 1 MDILKSEILRKRQ-LVEDRNLLVENKKYFKRSELA-----------KKEEEAYFER--CG 46
Query: 57 HNSTASSANSNSVSSARTTTATTASGASATATKTLTNEQNIDNLNLPKQEVIRRLRLLKQ 116
+ + ++S+ + T L +QEVIRRLR +
Sbjct: 47 YKVQPKEDDQKPLTSSNPVLELELAEEKLPMT-------------LSRQEVIRRLRERGE 93
Query: 117 PITLFGEDDDARLERLKYV--------------LKAGLFEVDSDMTEGQTNDFLRDIVEL 162
P+ LFGE D +RL+ + LKA L ++D +L +IV
Sbjct: 94 PMRLFGETDYDAFQRLRKIEILTPEVNKGLRNDLKAALDKIDQQ--------YLNEIV-- 143
Query: 163 RKRQKTGILSERKRKDREEGGGEDGEGGGGD-----------EELSADGGSSGV-DMDKD 210
GG E GE + EEL A G S G D KD
Sbjct: 144 -------------------GGQEPGEEDTQNDLKVHEENTTIEELEALGESLGKGDDHKD 184
Query: 211 LKRMKANFDELCEEDKILVFFKRLLNEWNQELNEMPEAEKRTAKGKSMVATFKQCARYLN 270
+ D I F K LL W +ELN + KR+ +GK AT KQ YL
Sbjct: 185 M-------------DIITKFLKFLLGVWAKELNSREDYVKRSVQGKLNSATQKQTESYLR 231
Query: 271 PLFKFCRKKVLPDDIRQALMLMVNCCMKRDYLAAMDHYIRLAIGNAPWPIGVTMVGIHER 330
PLF+ RK+ LP DI++++ ++ ++R+Y+ A D Y+++AIGNAPWPIGVTMVGIH R
Sbjct: 232 PLFRKLRKRNLPADIKESITDIIKFMLQREYVKANDAYLQMAIGNAPWPIGVTMVGIHAR 291
Query: 331 SAREKIYTNSVAHIMNDETTRKYLQSVKRLMTFCQRRYPTMPSKAVEFNSL 381
+ REKI++ VAH++NDET RKY+Q +KRLMT CQ+ +PT PSK VE+N+L
Sbjct: 292 TGREKIFSKHVAHVLNDETQRKYIQGLKRLMTICQKHFPTDPSKCVEYNAL 342
>sp|Q2HJ41|PRP18_BOVIN Pre-mRNA-splicing factor 18 OS=Bos taurus GN=PRPF18 PE=2 SV=1
Length = 342
Score = 209 bits (531), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 147/411 (35%), Positives = 203/411 (49%), Gaps = 99/411 (24%)
Query: 1 MDLLKQELLRKRQGLAEE----TGGRRVFKRSEIEQKQIQKLREQEKREQEAKLLRQNNS 56
MD+LK E+LRKRQ L E+ ++ FKRSE+ K+E+EA R
Sbjct: 1 MDVLKSEILRKRQ-LVEDRNLLVENKKYFKRSELA-----------KKEEEAYFER--CG 46
Query: 57 HNSTASSANSNSVSSARTTTATTASGASATATKTLTNEQNIDNLNLPKQEVIRRLRLLKQ 116
+ + ++S+ + T L +QEVIRRLR +
Sbjct: 47 YKIQPKDEDQKPLTSSNPVLELELAEEKLPMT-------------LSRQEVIRRLRERGE 93
Query: 117 PITLFGEDDDARLERLKYV--------------LKAGLFEVDSDMTEGQTNDFLRDIVEL 162
PI LFGE D +RL+ + LKA L ++D +L ++V
Sbjct: 94 PIRLFGETDYDAFQRLRKIEILTPEVNKGLRNDLKAALDKIDQQ--------YLNELV-- 143
Query: 163 RKRQKTGILSERKRKDREEGGGEDGEGGGGD-----------EELSADGGSSGV-DMDKD 210
GG E GE + EEL A G S G D KD
Sbjct: 144 -------------------GGQEPGEEDTQNDLKVHEENTTIEELEALGESLGKGDDHKD 184
Query: 211 LKRMKANFDELCEEDKILVFFKRLLNEWNQELNEMPEAEKRTAKGKSMVATFKQCARYLN 270
+ D I F K LL W +ELN + KR+ +GK AT KQ YL
Sbjct: 185 M-------------DIITKFLKFLLGVWAKELNAREDYVKRSVQGKLNSATQKQTESYLR 231
Query: 271 PLFKFCRKKVLPDDIRQALMLMVNCCMKRDYLAAMDHYIRLAIGNAPWPIGVTMVGIHER 330
PLF+ RK+ LP DI++++ ++ ++R+Y+ A D Y+++AIGNAPWPIGVTMVGIH R
Sbjct: 232 PLFRKLRKRNLPADIKESITDIIKFMLQREYVKANDAYLQMAIGNAPWPIGVTMVGIHAR 291
Query: 331 SAREKIYTNSVAHIMNDETTRKYLQSVKRLMTFCQRRYPTMPSKAVEFNSL 381
+ REKI++ VAH++NDET RKY+Q +KRLMT CQ+ +PT PSK VE+N+L
Sbjct: 292 TGREKIFSKHVAHVLNDETQRKYIQGLKRLMTICQKHFPTDPSKCVEYNAL 342
>sp|Q6GMH0|PRP18_DANRE Pre-mRNA-splicing factor 18 OS=Danio rerio GN=prpf18 PE=2 SV=1
Length = 342
Score = 201 bits (512), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 130/384 (33%), Positives = 202/384 (52%), Gaps = 45/384 (11%)
Query: 1 MDLLKQELLRKRQGLAEE---TGGRRVFKRSEIEQKQIQKLREQEKREQEAKLLRQNNSH 57
MD+LK E+ RKR+ + E+ ++ FKR+E+ +K+ E R K+ +
Sbjct: 1 MDILKAEIARKRKLIEEKELIDDSKKYFKRAELARKE----EEDYYRRCGYKM---DKPE 53
Query: 58 NSTASSANSNSVSSARTTTATTASGASATATKTLTNEQNIDNLNLPKQEVIRRLRLLKQP 117
S ++N V T + L +QEVIRRLR +P
Sbjct: 54 EEAPQSTSANPVLELELTEEKLP-------------------MTLSRQEVIRRLRERGEP 94
Query: 118 ITLFGEDDDARLERLKYVLKAGLFEVDSDMTEGQTNDFLRDIVELRKRQKTGILSERKRK 177
I LFGE D +RL+ + ++ +G ND + ++ ++ I+
Sbjct: 95 IRLFGESDYDAFQRLRKIEILA-----PEVNKGLRNDLKAAMDKIDQQYLNEIV------ 143
Query: 178 DREEGGGEDGEGGGGDEELSADGGSSGVDMDKDLKRMKANFDELCEEDKILVFFKRLLNE 237
GG +G +L ++ ++ + L N +++ + D I + LL
Sbjct: 144 -----GGAEGAELDTQHDLKVHEENTTIEELEALGASLGNGNDVRDMDIINKVLRFLLGV 198
Query: 238 WNQELNEMPEAEKRTAKGKSMVATFKQCARYLNPLFKFCRKKVLPDDIRQALMLMVNCCM 297
W ++LN + KR+ +GK AT KQ YL PLF+ RKK LP DI++++ ++ +
Sbjct: 199 WAKDLNSREDHIKRSVQGKLASATQKQTESYLEPLFRKLRKKNLPADIKESITDIIKFML 258
Query: 298 KRDYLAAMDHYIRLAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQSV 357
+R+Y+ A D Y+++AIGNAPWPIGVTMVGIH R+ REKI++ VAH++NDET RKY+Q +
Sbjct: 259 EREYVKANDAYLQMAIGNAPWPIGVTMVGIHARTGREKIFSKHVAHVLNDETQRKYIQGL 318
Query: 358 KRLMTFCQRRYPTMPSKAVEFNSL 381
KRLMT CQ+ +PT PSK VE+N+L
Sbjct: 319 KRLMTICQKHFPTDPSKCVEYNAL 342
>sp|Q5EAV6|PRP18_XENLA Pre-mRNA-splicing factor 18 OS=Xenopus laevis GN=prpf18 PE=2 SV=1
Length = 342
Score = 197 bits (500), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 136/387 (35%), Positives = 206/387 (53%), Gaps = 51/387 (13%)
Query: 1 MDLLKQELLRKRQGLAEET---GGRRVFKRSEIEQKQIQKLREQEKREQEAKLLRQNNSH 57
MD+LK E+ RKR+ L E+ G ++ FKRSE+ K+ ++ E+ +
Sbjct: 1 MDILKAEIARKRKQLEEKALVGGEKKYFKRSELTAKEKEEYFERCG-------YKMQKEE 53
Query: 58 NSTASSANSNSVSSARTTTATTASGASATATKTLTNEQNIDNLNLPKQEVIRRLRLLKQP 117
S++SN V + L +QEVIRRLR +P
Sbjct: 54 EEEKPSSSSNPVLELELAEEKLP-------------------MTLSRQEVIRRLRERGEP 94
Query: 118 ITLFGEDDDARLERLKYVLKAGLFEV-DSDMTEGQTNDFLRDIVELRKRQKTGILSERKR 176
I LFGE D +RL+ + E+ ++ +G ND + ++ ++ +++ ++
Sbjct: 95 IRLFGETDYETFQRLRKI------EILAPEVNKGLRNDLKAALDKIDQQYFNELVAGQET 148
Query: 177 KDRE-EGGGEDGEGGGGDEELSADGGSSGV-DMDKDLKRMKANFDELCEEDKILVFFKRL 234
D + + + E EEL G G D +KD+ + +K+L F L
Sbjct: 149 TDEDTQNDLKVHEENTTIEELEVLGECLGQGDDNKDMDTI----------NKVLKF---L 195
Query: 235 LNEWNQELNEMPEAEKRTAKGKSMVATFKQCARYLNPLFKFCRKKVLPDDIRQALMLMVN 294
L W +ELN + KR+ GK AT KQ YL PLF+ RKK LP DI++++ ++
Sbjct: 196 LGVWAKELNAREDYVKRSVHGKLASATQKQTESYLKPLFRKLRKKNLPADIKESITDIIK 255
Query: 295 CCMKRDYLAAMDHYIRLAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYL 354
++R+Y+ A D Y+++AIGNAPWPIGVTMVGIH R+ REKI++ VAH++NDET RKY+
Sbjct: 256 FMLQREYVKANDAYLQMAIGNAPWPIGVTMVGIHARTGREKIFSKHVAHVLNDETQRKYI 315
Query: 355 QSVKRLMTFCQRRYPTMPSKAVEFNSL 381
Q +KRLMT CQ+ + T PSK VE+N+L
Sbjct: 316 QGLKRLMTICQKYFSTDPSKCVEYNAL 342
>sp|O94406|PRP18_SCHPO Pre-mRNA-splicing factor 18 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=prp18 PE=3 SV=1
Length = 343
Score = 112 bits (280), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 88/147 (59%)
Query: 226 KILVFFKRLLNEWNQELNEMPEAEKRTAKGKSMVATFKQCARYLNPLFKFCRKKVLPDDI 285
+++ F + + W+ L+ +++ + + F+Q + L+ L + + L DDI
Sbjct: 193 QVVAFLQHGIRIWDNFLSSKSINSFESSESQMQLKIFRQAKQDLDVLIQLIVDEALNDDI 252
Query: 286 RQALMLMVNCCMKRDYLAAMDHYIRLAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIM 345
+++ + C K +++ A D Y+RL IGNAPWPIGVTMVGIHERSA +++ N ++I+
Sbjct: 253 FKSIAEICYRCQKHEFVKANDMYLRLTIGNAPWPIGVTMVGIHERSAHQRLQANPSSNIL 312
Query: 346 NDETTRKYLQSVKRLMTFCQRRYPTMP 372
DE RK LQ++KR +TF +R +P
Sbjct: 313 KDEKKRKCLQALKRFITFQERESSNLP 339
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 94/180 (52%), Gaps = 25/180 (13%)
Query: 1 MDLLKQELLRKRQGL--AEETGGRRVFKRSEIEQKQIQKL----------REQEKREQEA 48
MD LK+E+ RKR+ L E ++ F+R + E+++ +K RE +KR+ E
Sbjct: 1 MDFLKEEIERKRRQLEGTSELPVKKAFRRGDWEKEREKKYLQEKQQKDEQRELKKRKLEE 60
Query: 49 KLLRQNNSHNSTASSANSNSVSS----ARTTTATTASGASATATKTLTNEQN------ID 98
+ L+ + AN S + TTT + A AS +TK +E + I
Sbjct: 61 ERLKYEEKKLRISRLANKESSRNEELLTETTTPSPAVKASPASTKLSVSENDRLSIPEIT 120
Query: 99 NLNLPKQEVIRRLRLLKQPITLFGEDDDARLERLKYVLK-AGLFEVDSD-MTEG-QTNDF 155
NL E+I +LR +K+PI LFGE ++A ++R +LK L E++++ +T+G +T DF
Sbjct: 121 KDNLTLTEIIAKLREMKEPIRLFGESEEATIQRYYSLLKYKKLEEIENELLTKGVETIDF 180
>sp|P33411|PRP18_YEAST Pre-mRNA-splicing factor 18 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=PRP18 PE=1 SV=3
Length = 251
Score = 72.4 bits (176), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 52/83 (62%), Gaps = 1/83 (1%)
Query: 282 PDDIRQALMLMVNCCMKRDYLAAMDHYIRLAIGNAPWPIGVTMVGIHERSAREKIYTN-S 340
PD + ++ + ++ A+ Y++L+IGN WPIGVT VGIH RSA KI +
Sbjct: 157 PDLLISLATVLYHLQQPKEINLAVQSYMKLSIGNVAWPIGVTSVGIHARSAHSKIQGGRN 216
Query: 341 VAHIMNDETTRKYLQSVKRLMTF 363
A+IM DE TR ++ S+KRL+TF
Sbjct: 217 AANIMIDERTRLWITSIKRLITF 239
>sp|Q32KP7|CQ064_BOVIN Uncharacterized protein C17orf64 homolog OS=Bos taurus PE=2 SV=2
Length = 234
Score = 37.0 bits (84), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 63/164 (38%), Gaps = 32/164 (19%)
Query: 261 TFKQCARYLNPLFKFCRKKVLPDDIRQALMLMVNCCMKRDYLAAMDHY-IRLAIGNAPWP 319
TFK C YL PL KF RK LP D+ Q L MK+ + DH L W
Sbjct: 48 TFKICKEYLRPLKKFLRKLHLPKDLPQKKKLKY---MKQSLVVLGDHINTFLQHYCRAWE 104
Query: 320 IG---------VTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQSVKRLMTFCQRRYPT 370
I V++ E K+Y + N++TT K LM FC
Sbjct: 105 IKHWKKMLWRFVSLFSELEAKQLRKLYK----YTKNNQTT-------KFLMAFC------ 147
Query: 371 MPSKAVEFNSLANGSD-LQSLLAEETISGSNQSSEERLRLMPAP 413
P A E + LA+ D L L + +ERL + AP
Sbjct: 148 -PLDAPESSLLADQEDSLPKLCTAWGLRSHLNGMKERLSKLQAP 190
>sp|Q86WR6|CQ064_HUMAN Uncharacterized protein C17orf64 OS=Homo sapiens GN=C17orf64 PE=2
SV=2
Length = 236
Score = 36.2 bits (82), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 251 RTAKGKSMVATFKQCARYLNPLFKFCRKKVLPDDIRQALMLMVNCCMKRDYLAAMDH 307
R AKG TFK C YL PL KF RK LP D+ Q L MK+ + DH
Sbjct: 39 RHAKGLDQ-DTFKTCKEYLRPLKKFLRKLHLPRDLPQKKKLKY---MKQSLVVLGDH 91
>sp|Q9D979|CQ064_MOUSE Uncharacterized protein C17orf64 homolog OS=Mus musculus PE=2 SV=3
Length = 236
Score = 35.8 bits (81), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 251 RTAKGKSMVATFKQCARYLNPLFKFCRKKVLPDDIRQ 287
R AKG S TFK C YL PL KF RK LP D+ Q
Sbjct: 39 RHAKGLSQ-DTFKICKEYLRPLKKFLRKLNLPKDLPQ 74
>sp|Q5QJC9|BAG5_RAT BAG family molecular chaperone regulator 5 OS=Rattus norvegicus
GN=Bag5 PE=1 SV=1
Length = 447
Score = 35.4 bits (80), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 6/62 (9%)
Query: 105 QEVIRRLRLLKQPITLF-GEDDDARLERLKYVLKAGLFEVDSDMTEGQTNDFLRDIVELR 163
QE+ R ++ ++Q + F G DD +RL+ +L LFE+DS TEG+ DI + R
Sbjct: 14 QEIQREVKSIEQQVVGFSGLSDDKNYKRLERILTKQLFEIDSVDTEGKG-----DIQQAR 68
Query: 164 KR 165
KR
Sbjct: 69 KR 70
>sp|Q9ZS62|PHYB1_SOLLC Phytochrome B1 OS=Solanum lycopersicum GN=PHYB1 PE=2 SV=1
Length = 1131
Score = 34.3 bits (77), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 51/127 (40%), Gaps = 30/127 (23%)
Query: 235 LNEWNQELNEMPEAEKRTAKGKSMVA--TFKQCARYLNPLFKFCRKKV------------ 280
+N WN+++ E+ AKGKS+V +K+ L + V
Sbjct: 646 INGWNEKVVELTGLSAEEAKGKSLVHDLLYKESQESAEKLLYNALRGVEGKNVEIKLRTF 705
Query: 281 LPDDIRQALMLMVNCCMKRDYLAAMDHYIRLAIGNAPWPIGVTMVGIHERSAREKIYTNS 340
+ + +A+ L+VN C RDY ++ +GV+ VG + EKI +
Sbjct: 706 GAEQVEKAVFLVVNACSSRDYTNSI--------------VGVSFVG--QDVTGEKIVMDK 749
Query: 341 VAHIMND 347
HI D
Sbjct: 750 FIHIQGD 756
>sp|B2VF78|SLMA_ERWT9 Nucleoid occlusion factor SlmA OS=Erwinia tasmaniensis (strain DSM
17950 / Et1/99) GN=slmA PE=3 SV=1
Length = 198
Score = 33.5 bits (75), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 74/174 (42%), Gaps = 21/174 (12%)
Query: 30 IEQKQIQKLREQEKREQEAKLLRQNNSHN--STASSANSNSVSSARTTTATTASGASATA 87
+E+K ++ R +E + A++L ++ +TA A + VS A + +
Sbjct: 2 VEKKSAKRNRREEILQALAQMLESSDGSQRITTAKLAANVGVSEAALYRHFPSKTKMFDS 61
Query: 88 TKTLTNEQNIDNLNLP---KQEVIRRLRLLKQPITLFGEDDDARLERLKYVLKAGLFEVD 144
+ I +NL ++E + RLRL+ Q I FGE + L +L +
Sbjct: 62 LIEFIEDSLITRINLILKDEKETMPRLRLITQLILGFGELNPG----LTRILTGHALMFE 117
Query: 145 SDMTEGQTNDFLRDIVELRKRQKTGILSERKRKDREEGGGEDGEGGGGDEELSA 198
D +G+ N I EL+ RQ R+RK RE GEG DE L A
Sbjct: 118 QDRLQGRINQLFERI-ELQIRQVM-----RERKMRE------GEGFATDEALLA 159
>sp|P38968|SEC31_YEAST Protein transport protein SEC31 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=SEC31 PE=1 SV=3
Length = 1273
Score = 33.5 bits (75), Expect = 3.5, Method: Composition-based stats.
Identities = 33/129 (25%), Positives = 58/129 (44%), Gaps = 9/129 (6%)
Query: 42 EKREQEAKLLRQNNSHNSTASSANSNSVSSARTTTATTASGASATATKTLTNEQNIDN-- 99
+KR + + QN S +T S+S S + + T + T+ + +++E D
Sbjct: 1113 KKRSNKLASIEQNPSQGATYPPTLSSSASPLQPSQPPTLASQVNTSAENVSHEIPADQQP 1172
Query: 100 -LNLPKQEVIRRLRLLKQPITLFGEDDDARLERLKYVLKAGLFEVDSDMTEGQTNDFLRD 158
++ K+E+ R L + + +D D RL+ L Y L+ D+ T D L D
Sbjct: 1173 IVDFLKEELARVTPLTPKEYSKQLKDCDKRLKILFYHLE------KQDLLTQPTIDCLHD 1226
Query: 159 IVELRKRQK 167
+V L K +K
Sbjct: 1227 LVALMKEKK 1235
>sp|Q8CI32|BAG5_MOUSE BAG family molecular chaperone regulator 5 OS=Mus musculus GN=Bag5
PE=1 SV=1
Length = 447
Score = 33.1 bits (74), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 6/62 (9%)
Query: 105 QEVIRRLRLLKQPITLF-GEDDDARLERLKYVLKAGLFEVDSDMTEGQTNDFLRDIVELR 163
QE+ R ++ ++ + F G DD +RL+ +L LFE+DS TEG+ DI + R
Sbjct: 14 QEIQREVKAIEPQVVGFSGLSDDKNYKRLERILTKQLFEIDSVDTEGKG-----DIQQAR 68
Query: 164 KR 165
KR
Sbjct: 69 KR 70
>sp|Q5RGJ8|GNPTA_DANRE N-acetylglucosamine-1-phosphotransferase subunits alpha/beta
OS=Danio rerio GN=gnptab PE=2 SV=1
Length = 1219
Score = 33.1 bits (74), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 7/88 (7%)
Query: 230 FFKRLLNEWNQELNEMPEAEKRTAKGKSMVATFKQCARYLNPL----FKFCRKKV---LP 282
FF+ L+ E N+ E+ RTA G+ + TF RY+N L F F +KV +P
Sbjct: 864 FFQDLMEEVNRLQTELQYTADRTATGRRLQDTFADSLRYVNRLLNAQFGFTSRKVPAHMP 923
Query: 283 DDIRQALMLMVNCCMKRDYLAAMDHYIR 310
I + +M + +++ H +R
Sbjct: 924 HMIDRLIMQELQDTFPQEFDKTSSHRVR 951
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.130 0.358
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 146,458,870
Number of Sequences: 539616
Number of extensions: 6421716
Number of successful extensions: 43648
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 377
Number of HSP's that attempted gapping in prelim test: 40111
Number of HSP's gapped (non-prelim): 3245
length of query: 416
length of database: 191,569,459
effective HSP length: 120
effective length of query: 296
effective length of database: 126,815,539
effective search space: 37537399544
effective search space used: 37537399544
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 62 (28.5 bits)