Query 014920
Match_columns 416
No_of_seqs 177 out of 297
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 03:29:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014920.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014920hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dvk_A PRP18; PRE-mRNA splicin 100.0 1.2E-67 4.1E-72 481.7 13.9 140 223-374 31-172 (173)
2 2dk4_A PRE-mRNA-splicing facto 99.4 8.3E-14 2.9E-18 112.3 6.2 49 99-152 24-72 (76)
3 1mzw_B U4/U6 snRNP 60KDA prote 99.3 4.9E-13 1.7E-17 91.1 2.7 30 106-135 1-30 (31)
4 2yru_A Steroid receptor RNA ac 98.1 8.7E-06 3E-10 70.4 8.3 80 262-373 38-117 (118)
5 1f8v_D Mature capsid protein g 43.4 5 0.00017 28.6 0.0 19 314-332 19-37 (40)
6 2b1e_A Exocyst complex compone 37.7 2E+02 0.0069 29.9 11.1 74 227-314 71-156 (564)
7 1k8k_E P21, ARP2/3 complex 21 33.1 1.5E+02 0.0051 27.2 8.0 63 299-375 86-159 (178)
8 1nov_D Nodamura virus coat pro 32.5 6.3 0.00022 28.6 -0.9 20 313-332 18-37 (44)
9 1rtw_A Transcriptional activat 31.8 56 0.0019 29.3 5.1 46 270-320 20-65 (220)
10 2z2q_B Coat protein gamma; wil 31.7 6.8 0.00023 28.4 -0.8 20 312-331 17-36 (44)
11 1rcw_A CT610, CADD; iron, DI-i 30.4 76 0.0026 28.1 5.7 45 270-319 24-68 (231)
12 2jsh_A Appetite-regulating hor 29.2 11 0.00039 24.6 -0.0 12 315-326 2-13 (26)
13 2gm8_A TENA homolog/THI-4 thia 29.1 72 0.0024 28.7 5.3 45 270-319 29-73 (221)
14 2rrh_A VIP peptides; peptide h 27.4 13 0.00044 24.6 -0.0 25 334-358 3-27 (29)
15 1z72_A Transcriptional regulat 26.6 74 0.0025 28.5 4.9 86 270-360 34-132 (225)
16 2a2m_A Hypothetical protein BT 25.7 87 0.003 29.3 5.4 44 270-318 68-111 (258)
17 3iee_A Putative exported prote 25.7 98 0.0034 30.1 5.8 72 293-368 37-108 (270)
18 3ewt_E Tumor necrosis factor r 24.7 30 0.001 22.3 1.4 16 352-367 2-17 (25)
19 2g49_C Glucagon preproprotein; 24.1 21 0.00072 23.8 0.5 23 336-358 5-27 (29)
20 2qcx_A Transcriptional activat 22.6 90 0.0031 29.2 4.8 45 270-319 48-92 (263)
21 2d4u_A Methyl-accepting chemot 22.6 2.1E+02 0.0073 23.3 6.7 80 227-313 74-155 (176)
22 1vls_A TAR, aspartate receptor 21.5 3.1E+02 0.011 21.8 7.8 79 228-313 60-139 (146)
23 2qzc_A Transcriptional activat 21.4 1.3E+02 0.0046 26.6 5.6 42 270-316 25-66 (214)
24 1m48_A Interleukin-2; four-hel 20.1 31 0.001 30.2 0.9 16 356-371 117-132 (133)
No 1
>1dvk_A PRP18; PRE-mRNA splicing factor, X-RAY crystallography, RNA binding protein; 2.15A {Saccharomyces cerevisiae} SCOP: a.72.1.1
Probab=100.00 E-value=1.2e-67 Score=481.72 Aligned_cols=140 Identities=34% Similarity=0.519 Sum_probs=113.8
Q ss_pred chhHHHHHHHHHHHHHHHHhccCcHHHhhchhhhhhHHHHHHHHhhHHHHHHHhhcCCCCHHHHHHHHHHHHHHHh-chH
Q 014920 223 EEDKILVFFKRLLNEWNQELNEMPEAEKRTAKGKSMVATFKQCARYLNPLFKFCRKKVLPDDIRQALMLMVNCCMK-RDY 301 (416)
Q Consensus 223 d~d~I~~~~k~lL~eWe~~l~~r~~~~k~s~~gk~~~~~~~Qt~~~L~PLf~~Lr~~~l~~dil~~L~~Iv~~~q~-rey 301 (416)
+..+|..||+++|++|+.+|++++ .++|.||++||+|||++|++++||+||+.+|++||+|||+ |+|
T Consensus 31 l~~~~~~y~~~lL~eWe~~L~~~~------------~~~~~Qtk~~l~PL~~~Lr~~~L~~dil~~L~~Iv~~~q~~r~y 98 (173)
T 1dvk_A 31 LSMKCNLYIHEILSRWKASLEAYH------------PELFLDTKKALFPLLLQLRRNQLAPDLLISLATVLYHLQQPKEI 98 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHTGGGSC------------HHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHTSGGGH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc------------HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhhhH
Confidence 456789999999999999999875 3579999999999999999999999999999999999998 999
Q ss_pred HHHHHHHHHhhhcCCCCccceeeeeeechhhhhhhcc-cCccccccchHHHHHHHHhHHHHHHHHhhCCCCCCc
Q 014920 302 LAAMDHYIRLAIGNAPWPIGVTMVGIHERSAREKIYT-NSVAHIMNDETTRKYLQSVKRLMTFCQRRYPTMPSK 374 (416)
Q Consensus 302 ~~And~Yl~LaIGNa~WPIGVTmVGIHeRs~reKI~~-~~vAHVmnDE~tRkyiqsiKRLmTf~Q~~~ptdPSk 374 (416)
++|||+||+||||||||||||||||||+|||||||++ ++||||||||+||||||||||||||||++||++||+
T Consensus 99 ~~And~Yl~LaIGNA~WPIGVTmVGIHeRsareKI~~~~~vAHImnDE~tRKyiqsiKRLmTf~Q~~~p~~~s~ 172 (173)
T 1dvk_A 99 NLAVQSYMKLSIGNVAWPIGVTSVGIHARSAHSKIQGGRNAANIMIDERTRLWITSIKRLITFEEWYTSNHDSL 172 (173)
T ss_dssp HHHHHHHHHHHHTBCCCCSCC--------------------CBCCCCHHHHHHHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHhhcCCCCCceeeeeeeehhhHHHHHhccchhhHHhccHHHHHHHHHHHHHHHHHHHhCCCCccc
Confidence 9999999999999999999999999999999999996 699999999999999999999999999999999986
No 2
>2dk4_A PRE-mRNA-splicing factor 18; SFM domain, HPRP18, structural NPPSFA, national project on protein structural and function analyses; NMR {Homo sapiens} SCOP: a.140.6.1
Probab=99.45 E-value=8.3e-14 Score=112.32 Aligned_cols=49 Identities=39% Similarity=0.651 Sum_probs=42.3
Q ss_pred CCCCCHHHHHHHHHhcCCCccccCCCHHHHHHHHHHHHHccccccCcccccCcc
Q 014920 99 NLNLPKQEVIRRLRLLKQPITLFGEDDDARLERLKYVLKAGLFEVDSDMTEGQT 152 (416)
Q Consensus 99 ~~~Lp~~Evi~rLR~lgePi~LFGE~~~~R~~RLr~l~~~~~~e~~~e~~~G~~ 152 (416)
..++|+.||+++||++|||||||||++++|+.|||+|+. ..+++++|+.
T Consensus 24 ~v~~~d~eV~~~LR~lgEPi~LFGE~~~~Rr~RLr~l~~-----~~~~~~~g~~ 72 (76)
T 2dk4_A 24 PMTLSRQEVIRRLRERGEPIRLFGETDYDAFQRLRKIEI-----LTPEVNKGSG 72 (76)
T ss_dssp SCCSCHHHHHHHHHHHTCCSSCTTCCHHHHHHHHHHHHH-----HCSSSCCCCC
T ss_pred CCCCCHHHHHHHHHHcCCCeeecCCChHHHHHHHHHHHh-----cCcccccCCC
Confidence 467999999999999999999999999999999999853 2366776663
No 3
>1mzw_B U4/U6 snRNP 60KDA protein; cyclophilin, peptidyl-prolyl-CIS/trans isomerase, spliceosome, U4/U6-60K protein, WD protein; 2.00A {Homo sapiens}
Probab=99.32 E-value=4.9e-13 Score=91.15 Aligned_cols=30 Identities=53% Similarity=0.775 Sum_probs=28.9
Q ss_pred HHHHHHHhcCCCccccCCCHHHHHHHHHHH
Q 014920 106 EVIRRLRLLKQPITLFGEDDDARLERLKYV 135 (416)
Q Consensus 106 Evi~rLR~lgePi~LFGE~~~~R~~RLr~l 135 (416)
||+++||++|||||||||++.+|+.||+++
T Consensus 1 eV~~~LR~lgePi~lFGE~~~~Rr~RLr~l 30 (31)
T 1mzw_B 1 EVKASLRALGEPITLFGEGPAERRERLRNI 30 (31)
T ss_dssp CHHHHHHHTTCCSEETTCCHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCeeecCCChHHHHHHHHHh
Confidence 599999999999999999999999999986
No 4
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.09 E-value=8.7e-06 Score=70.39 Aligned_cols=80 Identities=21% Similarity=0.218 Sum_probs=66.8
Q ss_pred HHHHHhhHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCccceeeeeeechhhhhhhcccCc
Q 014920 262 FKQCARYLNPLFKFCRKKVLPDDIRQALMLMVNCCMKRDYLAAMDHYIRLAIGNAPWPIGVTMVGIHERSAREKIYTNSV 341 (416)
Q Consensus 262 ~~Qt~~~L~PLf~~Lr~~~l~~dil~~L~~Iv~~~q~rey~~And~Yl~LaIGNa~WPIGVTmVGIHeRs~reKI~~~~v 341 (416)
...+.+-|.-||.+|++++|++.+...|..|+.+++.++|..|+..++.|+-.
T Consensus 38 ~~D~~KRL~~LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t~--------------------------- 90 (118)
T 2yru_A 38 CDDISRRLALLREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMVD--------------------------- 90 (118)
T ss_dssp HHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHS---------------------------
T ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC---------------------------
Confidence 45677789999999999999999999999999999999999999999988641
Q ss_pred cccccchHHHHHHHHhHHHHHHHHhhCCCCCC
Q 014920 342 AHIMNDETTRKYLQSVKRLMTFCQRRYPTMPS 373 (416)
Q Consensus 342 AHVmnDE~tRkyiqsiKRLmTf~Q~~~ptdPS 373 (416)
| -+| ...|+.+|||||+.++. .|..||
T Consensus 91 -~--~~E-~~~Wm~GlKrLI~~a~~-~~~~~~ 117 (118)
T 2yru_A 91 -H--VTE-VSQWMVGVKRLIAEKKS-LSGPSS 117 (118)
T ss_dssp -T--HHH-HTTTHHHHHHHHHHHHH-HHSCCC
T ss_pred -c--HHH-HHhHHHHHHHHHHHHHH-cCCCCC
Confidence 2 234 35899999999999875 444443
No 5
>1f8v_D Mature capsid protein gamma; nodavirus, coat protein, nucleoprotein, protein-RNA interactions, RNA duplex, RNA CAGE, gamma polypeptide; 3.00A {Pariacato virus} SCOP: b.121.4.4
Probab=43.42 E-value=5 Score=28.60 Aligned_cols=19 Identities=26% Similarity=0.590 Sum_probs=2.9
Q ss_pred cCCCCccceeeeeeechhh
Q 014920 314 GNAPWPIGVTMVGIHERSA 332 (416)
Q Consensus 314 GNa~WPIGVTmVGIHeRs~ 332 (416)
-|+|=|+|++.-|||-=++
T Consensus 19 S~iPGPVG~~asGi~gl~~ 37 (40)
T 1f8v_D 19 SVIPGPVGTISAGVHQLTG 37 (40)
T ss_dssp --------------CCCCS
T ss_pred hcCCCchhHHHHhHHHHHH
Confidence 4679999999999996443
No 6
>2b1e_A Exocyst complex component EXO70; tethering complex, endocytosis/exocytosis complex; 2.00A {Saccharomyces cerevisiae} PDB: 2b7m_A 2pfv_A
Probab=37.70 E-value=2e+02 Score=29.92 Aligned_cols=74 Identities=15% Similarity=0.166 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHhccCcHHHhhchhhhhhHHHHHHHHhhHHHHHHHhhcC----CCCHHHHHHHHHHHHHHHhc---
Q 014920 227 ILVFFKRLLNEWNQELNEMPEAEKRTAKGKSMVATFKQCARYLNPLFKFCRKK----VLPDDIRQALMLMVNCCMKR--- 299 (416)
Q Consensus 227 I~~~~k~lL~eWe~~l~~r~~~~k~s~~gk~~~~~~~Qt~~~L~PLf~~Lr~~----~l~~dil~~L~~Iv~~~q~r--- 299 (416)
+..=+..|+..+...|...-...-+. + .-+-|+.. +-+. .||++.+..|..|..+|..-
T Consensus 71 ~l~~~~~L~~~g~~~L~~~F~~lL~~------------s-~p~~p~~~-i~k~~p~p~l~~~~l~~L~~Ia~~m~~~g~~ 136 (564)
T 2b1e_A 71 ILTHLEQLIKRSEAQLRVYFISILNS------------I-KPFDPQIN-ITKKMPFPYYEDQQLGALSWILDYFHGNSEG 136 (564)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT------------S-CCCCHHHH-HHHTCCCCCCCHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh------------C-CCCCHHHh-hccCCCCCCCCHHHHHHHHHHHHHHHhcCCc
Confidence 44556777777777766532111110 0 11333322 3333 78999999999999997642
Q ss_pred -----hHHHHHHHHHHhhhc
Q 014920 300 -----DYLAAMDHYIRLAIG 314 (416)
Q Consensus 300 -----ey~~And~Yl~LaIG 314 (416)
-|.++.-.||.-++-
T Consensus 137 ~~~~~iY~~~R~~~l~~sL~ 156 (564)
T 2b1e_A 137 SIIQDILVGERSKLILKCMA 156 (564)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 366677777777764
No 7
>1k8k_E P21, ARP2/3 complex 21 kDa subunit, P21-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: a.148.1.1 PDB: 1tyq_E* 1u2v_E* 2p9i_E* 2p9k_E* 2p9l_E 2p9n_E* 2p9p_E* 2p9s_E* 2p9u_E* 3dxk_E* 3dxm_E* 3rse_E
Probab=33.11 E-value=1.5e+02 Score=27.20 Aligned_cols=63 Identities=24% Similarity=0.374 Sum_probs=42.8
Q ss_pred chHHHHHHHHHHhhhcCC------CCccceeeeeeechhhhhhhcccCccccccchHHHHHHHHhHHHHHH--HHhhCCC
Q 014920 299 RDYLAAMDHYIRLAIGNA------PWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQSVKRLMTF--CQRRYPT 370 (416)
Q Consensus 299 rey~~And~Yl~LaIGNa------~WPIGVTmVGIHeRs~reKI~~~~vAHVmnDE~tRkyiqsiKRLmTf--~Q~~~pt 370 (416)
....+|......|||-|. .||++.....- ++--.-|+.|-|++.++-=+.. |++-|.+
T Consensus 86 ~~k~ea~k~l~~lal~~F~iPGd~gFpLn~~y~~P--------------~~~~e~d~lR~Yl~QlRqEl~~RL~ervf~~ 151 (178)
T 1k8k_E 86 NSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYAKP--------------ANKQEDEVMRAYLQQLRQETGLRLCEKVFDP 151 (178)
T ss_dssp CSHHHHHHHHHHHHHSCCCCTTSTTCTTTTTSCCC--------------SSHHHHHHHHHHHHHHHHHHHHHHHHHHBCS
T ss_pred CCHHHHHHHHHHHhhhcCCCCCCCCCCccccccCC--------------CChhHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 567889998899998654 46655322111 2223458899999999855544 8899976
Q ss_pred C---CCcc
Q 014920 371 M---PSKA 375 (416)
Q Consensus 371 d---PSk~ 375 (416)
+ |||.
T Consensus 152 ~~~~psKw 159 (178)
T 1k8k_E 152 QNDKPSKW 159 (178)
T ss_dssp SSSCBCHH
T ss_pred CCCCCCcc
Confidence 4 8884
No 8
>1nov_D Nodamura virus coat proteins; insect virus, icosahedral VIRU; 3.50A {Nodamura virus}
Probab=32.54 E-value=6.3 Score=28.58 Aligned_cols=20 Identities=30% Similarity=0.496 Sum_probs=16.4
Q ss_pred hcCCCCccceeeeeeechhh
Q 014920 313 IGNAPWPIGVTMVGIHERSA 332 (416)
Q Consensus 313 IGNa~WPIGVTmVGIHeRs~ 332 (416)
.-|+|=|||++.-|||-=++
T Consensus 18 aS~iPGPVG~~asGi~gl~~ 37 (44)
T 1nov_D 18 ASTIPGPVGVAATGIKGIIE 37 (44)
T ss_pred HhcCCCchhHHHHhHHHHHH
Confidence 35889999999999996543
No 9
>1rtw_A Transcriptional activator, putative; PF1337, TENA, thiamin, structural genomics, PSI, protein STR initiative; HET: MP5; 2.35A {Pyrococcus furiosus} SCOP: a.132.1.3
Probab=31.83 E-value=56 Score=29.34 Aligned_cols=46 Identities=7% Similarity=0.082 Sum_probs=38.0
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCcc
Q 014920 270 NPLFKFCRKKVLPDDIRQALMLMVNCCMKRDYLAAMDHYIRLAIGNAPWPI 320 (416)
Q Consensus 270 ~PLf~~Lr~~~l~~dil~~L~~Iv~~~q~rey~~And~Yl~LaIGNa~WPI 320 (416)
-|++..|.+|+||.+.+.. +..|..-|++..--++-+++.++|=|=
T Consensus 20 HPFv~~l~~GtL~~~~f~~-----YL~QDy~yl~~f~r~~a~~~~ka~~~~ 65 (220)
T 1rtw_A 20 HKFLIEMAENTIKKENFEK-----WLVNDYYFVKNALRFMALLMAKAPDDL 65 (220)
T ss_dssp CHHHHHHHTTCCCHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHSCGGG
T ss_pred ChHHHHHHcCCCCHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhCCChh
Confidence 4999999999999988753 445778899998889999998887653
No 10
>2z2q_B Coat protein gamma; wild type, icosahedral virus, virus/RNA complex; 2.70A {Flock house virus} PDB: 2q26_B 3lob_D 2bbv_D
Probab=31.71 E-value=6.8 Score=28.41 Aligned_cols=20 Identities=50% Similarity=0.645 Sum_probs=16.3
Q ss_pred hhcCCCCccceeeeeeechh
Q 014920 312 AIGNAPWPIGVTMVGIHERS 331 (416)
Q Consensus 312 aIGNa~WPIGVTmVGIHeRs 331 (416)
+.-+.|=|+||+.-|||-=+
T Consensus 17 a~S~iPGPVG~~asGi~~l~ 36 (44)
T 2z2q_B 17 AASNIPGPIGVAASGISGLS 36 (44)
T ss_pred HHhcCCCchhHHHHhHHHHH
Confidence 34578999999999999654
No 11
>1rcw_A CT610, CADD; iron, DI-iron, redox enzyme, metallo enzyme, oxidoreductase,; 2.50A {Chlamydia trachomatis} SCOP: a.132.1.4
Probab=30.40 E-value=76 Score=28.13 Aligned_cols=45 Identities=13% Similarity=-0.002 Sum_probs=36.5
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCc
Q 014920 270 NPLFKFCRKKVLPDDIRQALMLMVNCCMKRDYLAAMDHYIRLAIGNAPWP 319 (416)
Q Consensus 270 ~PLf~~Lr~~~l~~dil~~L~~Iv~~~q~rey~~And~Yl~LaIGNa~WP 319 (416)
-|++..|..|+||.+.+.. +..|..-|+.+.--+|-++++++|=|
T Consensus 24 HPf~~~l~~G~L~~e~~~~-----yl~qdy~yl~~f~~~~a~~~~~~~~~ 68 (231)
T 1rcw_A 24 HTFYVKWSKGELTKEQLQA-----YAKDYYLHIKAFPKYLSAIHSRCDDL 68 (231)
T ss_dssp SHHHHHHHTTCCCHHHHHH-----HHHHTHHHHHHHHHHHHHHHTTCCCH
T ss_pred CHHHHHHhCCCCCHHHHHH-----HHHHhHHHHHHHHHHHHHHHhcCCCH
Confidence 4999999999999987653 33456779998888999999888755
No 12
>2jsh_A Appetite-regulating hormone, obestatin; micellar solution, DPC, SDS, alternative splicing, amidation, lipoprotein, secreted; NMR {Synthetic} PDB: 2jsj_A
Probab=29.23 E-value=11 Score=24.58 Aligned_cols=12 Identities=42% Similarity=1.055 Sum_probs=10.9
Q ss_pred CCCCccceeeee
Q 014920 315 NAPWPIGVTMVG 326 (416)
Q Consensus 315 Na~WPIGVTmVG 326 (416)
|||+-|||||-|
T Consensus 2 naPFeiGi~ls~ 13 (26)
T 2jsh_A 2 NAPFDVGIKLSG 13 (26)
T ss_dssp CSCSSTTGGGHH
T ss_pred CCceeEeeEecH
Confidence 899999999976
No 13
>2gm8_A TENA homolog/THI-4 thiaminase; transcription, transferase; HET: HMH; 2.50A {Pyrobaculum aerophilum} SCOP: a.132.1.3 PDB: 2gm7_A*
Probab=29.12 E-value=72 Score=28.73 Aligned_cols=45 Identities=20% Similarity=0.207 Sum_probs=37.8
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCc
Q 014920 270 NPLFKFCRKKVLPDDIRQALMLMVNCCMKRDYLAAMDHYIRLAIGNAPWP 319 (416)
Q Consensus 270 ~PLf~~Lr~~~l~~dil~~L~~Iv~~~q~rey~~And~Yl~LaIGNa~WP 319 (416)
-|++..|..|+||.+.+.. +..|.--|+...--++-+++.++|=|
T Consensus 29 HPFv~~l~~GtL~~~~f~~-----YL~QDy~yl~~f~r~~a~~~~ka~~~ 73 (221)
T 2gm8_A 29 HPFVAELYAGTLPMEKFKY-----YLLQDYNYLVNFAKALSLAASRAPSV 73 (221)
T ss_dssp CHHHHHHHHTCSCHHHHHH-----HHHHHHHHHHHHHHHHHHHHHTCSSH
T ss_pred CHHHHHHHcCCCCHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhCCCH
Confidence 4999999999999988753 44577889999999999999998743
No 14
>2rrh_A VIP peptides; peptide hormone, hormone; NMR {Homo sapiens} PDB: 2rri_A
Probab=27.41 E-value=13 Score=24.64 Aligned_cols=25 Identities=20% Similarity=0.523 Sum_probs=21.5
Q ss_pred hhhcccCccccccchHHHHHHHHhH
Q 014920 334 EKIYTNSVAHIMNDETTRKYLQSVK 358 (416)
Q Consensus 334 eKI~~~~vAHVmnDE~tRkyiqsiK 358 (416)
+.+|.+++..+|.+-..++||+.|+
T Consensus 3 dg~FTsdysk~l~~~~ak~fl~~l~ 27 (29)
T 2rrh_A 3 DAVFTDNYTRLRKQMAVKKYLNSIL 27 (29)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHh
Confidence 4578888899999999999999875
No 15
>1z72_A Transcriptional regulator, putative; structu genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; 1.45A {Streptococcus pneumoniae} SCOP: a.132.1.3 PDB: 2a6b_A
Probab=26.64 E-value=74 Score=28.55 Aligned_cols=86 Identities=9% Similarity=0.080 Sum_probs=54.1
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCcc----------cee--eeeeechhhhh-hh
Q 014920 270 NPLFKFCRKKVLPDDIRQALMLMVNCCMKRDYLAAMDHYIRLAIGNAPWPI----------GVT--MVGIHERSARE-KI 336 (416)
Q Consensus 270 ~PLf~~Lr~~~l~~dil~~L~~Iv~~~q~rey~~And~Yl~LaIGNa~WPI----------GVT--mVGIHeRs~re-KI 336 (416)
-|++..|.+|+||.+.+.. +..|.--|+...--++-+++.+++=|= ++. -.+.|.+-..+ -|
T Consensus 34 HPFv~~l~~GtL~~~~f~~-----YL~QDy~yl~~f~r~~a~~~~ka~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~Gi 108 (225)
T 1z72_A 34 HRFVKELFAGTIENKVLKD-----YLIQDYHFFDAFLSMLGACVAHADKLESKLRFAKQLGFLEADEDGYFQKAFKELKV 108 (225)
T ss_dssp CHHHHHHHHTCCCHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ChHHHHHhcCCCCHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4999999999999987753 445778899999899999998886442 111 12445444321 11
Q ss_pred cccCccccccchHHHHHHHHhHHH
Q 014920 337 YTNSVAHIMNDETTRKYLQSVKRL 360 (416)
Q Consensus 337 ~~~~vAHVmnDE~tRkyiqsiKRL 360 (416)
....+.++--..+++.|+.-+-+.
T Consensus 109 ~~~~~~~~~~~p~t~aY~~~l~~~ 132 (225)
T 1z72_A 109 AENDYLEVTLHPVTKAFQDLMYSA 132 (225)
T ss_dssp CTHHHHSCCCCHHHHHHHHHHHHH
T ss_pred CHHHHhhcCCCHHHHHHHHHHHHH
Confidence 111233344456677776665553
No 16
>2a2m_A Hypothetical protein BT3146; putative TENA family transcriptional regulator, structural G joint center for structural genomics; 1.88A {Bacteroides thetaiotaomicron} SCOP: a.132.1.3 PDB: 2a2o_A
Probab=25.70 E-value=87 Score=29.30 Aligned_cols=44 Identities=14% Similarity=-0.103 Sum_probs=36.1
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCC
Q 014920 270 NPLFKFCRKKVLPDDIRQALMLMVNCCMKRDYLAAMDHYIRLAIGNAPW 318 (416)
Q Consensus 270 ~PLf~~Lr~~~l~~dil~~L~~Iv~~~q~rey~~And~Yl~LaIGNa~W 318 (416)
-|++..|..|+||.+.+.. |..|..-|+.+.--++-+++.+|+=
T Consensus 68 HPFv~~L~~GtL~~e~F~~-----YL~QDy~yL~~far~~a~a~aka~~ 111 (258)
T 2a2m_A 68 TDYFKGIAAGTLDPNAYGS-----LMVQDGYYCFRGRDDYATAATCAQD 111 (258)
T ss_dssp SHHHHHHHHTCCCHHHHHH-----HHHHHHHHHHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHhcCCCCHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 4999999999999988763 4457788888888888888888863
No 17
>3iee_A Putative exported protein; YP_212931.1, hypothetical protein BF3319 from bacteroides FR structural genomics; HET: MSE; 1.70A {Bacteroides fragilis nctc 9343}
Probab=25.69 E-value=98 Score=30.11 Aligned_cols=72 Identities=17% Similarity=0.196 Sum_probs=52.6
Q ss_pred HHHHHhchHHHHHHHHHHhhhcCCCCccceeeeeeechhhhhhhcccCccccccchHHHHHHHHhHHHHHHHHhhC
Q 014920 293 VNCCMKRDYLAAMDHYIRLAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQSVKRLMTFCQRRY 368 (416)
Q Consensus 293 v~~~q~rey~~And~Yl~LaIGNa~WPIGVTmVGIHeRs~reKI~~~~vAHVmnDE~tRkyiqsiKRLmTf~Q~~~ 368 (416)
.+++....++.|-=-||+=+ |++ ||--+ |--|.=+.+..-..-+..-.+++|+.+.-.|.+.+|.+-.+..|
T Consensus 37 ~K~~~~~~~in~vl~Ymeq~-g~v--p~~~~-~~~~~~s~kd~a~~~~p~d~Fg~e~rqnL~q~~~~lf~s~~~~~ 108 (270)
T 3iee_A 37 LKDMVKEKDVNAVLDYMEQK-GKT--PALSA-IVPPAVVSKDSAIVLNPGNCFNEETRRNLKQNYTGLFQARTEFY 108 (270)
T ss_dssp HHHHCCHHHHHHHHHHHHHH-TTS--CCTTC-CCCCCCCCCSHHHHTSCCTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhHHHHHHHHHHc-CCC--Ccccc-ccCCCcCccchhhhcCcccccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555666666677666 555 76333 66666677766666788999999999999999999999887765
No 18
>3ewt_E Tumor necrosis factor receptor superfamily member 6; calmodulin-peptide complex, FAS, death domain, calcium, calcium binding protein; 2.40A {Homo sapiens}
Probab=24.74 E-value=30 Score=22.30 Aligned_cols=16 Identities=31% Similarity=0.648 Sum_probs=14.2
Q ss_pred HHHHHhHHHHHHHHhh
Q 014920 352 KYLQSVKRLMTFCQRR 367 (416)
Q Consensus 352 kyiqsiKRLmTf~Q~~ 367 (416)
+||+.|-+.||.+|-+
T Consensus 2 kyIp~IAe~M~~~~Vk 17 (25)
T 3ewt_E 2 KYITTIAGVMTLSQVK 17 (26)
T ss_pred CchhHHHHHHhHHHHH
Confidence 6999999999999953
No 19
>2g49_C Glucagon preproprotein; protein-peptide complex, hydrolase; 2.50A {Homo sapiens} PDB: 1kx6_A 1gcn_A 1bh0_A 1nau_A
Probab=24.14 E-value=21 Score=23.78 Aligned_cols=23 Identities=9% Similarity=0.339 Sum_probs=20.5
Q ss_pred hcccCccccccchHHHHHHHHhH
Q 014920 336 IYTNSVAHIMNDETTRKYLQSVK 358 (416)
Q Consensus 336 I~~~~vAHVmnDE~tRkyiqsiK 358 (416)
+|.+.+..+|.+-..++||+.|+
T Consensus 5 tFTsdysk~l~~~aak~fv~wL~ 27 (29)
T 2g49_C 5 TFTSDYSKYLDSRRAQDFVQWLM 27 (29)
T ss_pred cchHHHHHHHHHHHHHHHHHHHh
Confidence 57888999999999999999886
No 20
>2qcx_A Transcriptional activator TENA; UP-DOWN bundle, hydrolase; HET: PF1; 2.20A {Bacillus subtilis} PDB: 1yak_A* 1yaf_A* 1to9_A* 1tyh_A
Probab=22.62 E-value=90 Score=29.16 Aligned_cols=45 Identities=16% Similarity=0.074 Sum_probs=37.7
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCc
Q 014920 270 NPLFKFCRKKVLPDDIRQALMLMVNCCMKRDYLAAMDHYIRLAIGNAPWP 319 (416)
Q Consensus 270 ~PLf~~Lr~~~l~~dil~~L~~Iv~~~q~rey~~And~Yl~LaIGNa~WP 319 (416)
-|++..|..|+||.+.+.. |..|.--|+...--++-+++.++|=|
T Consensus 48 HPFv~~l~~GtL~~e~f~~-----YL~QDy~yL~~f~r~la~a~aka~~~ 92 (263)
T 2qcx_A 48 HPFVQGIGDGTLPIDRFKY-----YVLQDSYYLTHFAKVQSFGAAYAKDL 92 (263)
T ss_dssp CHHHHHHHHSCSCHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHCSSH
T ss_pred CHHHHHHHcCCCCHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhCCCH
Confidence 4999999999999988753 44577889999999999999998644
No 21
>2d4u_A Methyl-accepting chemotaxis protein I; helix-turn-helix, signaling protein; 1.95A {Escherichia coli} PDB: 3atp_A
Probab=22.59 E-value=2.1e+02 Score=23.32 Aligned_cols=80 Identities=9% Similarity=0.110 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHhccC--cHHHhhchhhhhhHHHHHHHHhhHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhchHHHH
Q 014920 227 ILVFFKRLLNEWNQELNEM--PEAEKRTAKGKSMVATFKQCARYLNPLFKFCRKKVLPDDIRQALMLMVNCCMKRDYLAA 304 (416)
Q Consensus 227 I~~~~k~lL~eWe~~l~~r--~~~~k~s~~gk~~~~~~~Qt~~~L~PLf~~Lr~~~l~~dil~~L~~Iv~~~q~rey~~A 304 (416)
+...+...-..|....... +++++.- -......|.+-...|.|++..|+.+.+..-+-... .-+ ...|..+
T Consensus 74 a~~~l~~~~~~~~~y~~~~~~~~~e~~l--~~~l~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~----~~~-~~~~~~~ 146 (176)
T 2d4u_A 74 ASISLKQAEKNWADYEALPRDPRQSTAA--AAEIKRNYDIYHNALAELIQLLGAGKINEFFDQPT----QGY-QDGFEKQ 146 (176)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCTTSCHHH--HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHCCH----HHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCCcccHHH--HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHhccc----hHH-HHHHHHH
Confidence 3456666666676654332 2112211 11123345555567999999999998655332111 111 3678888
Q ss_pred HHHHHHhhh
Q 014920 305 MDHYIRLAI 313 (416)
Q Consensus 305 nd~Yl~LaI 313 (416)
.+.|+.+..
T Consensus 147 ~~~l~~~~~ 155 (176)
T 2d4u_A 147 YVAYMEQND 155 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888877653
No 22
>1vls_A TAR, aspartate receptor; chemotaxis, bacterial chemotaxis receptor, unbound; 1.85A {Salmonella typhimurium} SCOP: a.24.2.1 PDB: 1vlt_A 1was_A 1wat_A 1jmw_A
Probab=21.45 E-value=3.1e+02 Score=21.79 Aligned_cols=79 Identities=14% Similarity=0.152 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHhccCcH-HHhhchhhhhhHHHHHHHHhhHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhchHHHHHH
Q 014920 228 LVFFKRLLNEWNQELNEMPE-AEKRTAKGKSMVATFKQCARYLNPLFKFCRKKVLPDDIRQALMLMVNCCMKRDYLAAMD 306 (416)
Q Consensus 228 ~~~~k~lL~eWe~~l~~r~~-~~k~s~~gk~~~~~~~Qt~~~L~PLf~~Lr~~~l~~dil~~L~~Iv~~~q~rey~~And 306 (416)
...++..=+.|..-....+. .++. .-....+.|..-...|.|++..|+.+.+..-.-.... -....|..+.+
T Consensus 60 ~~~l~~a~~~~~~y~~~~~~~~~~~--l~~~l~~~~~~~~~~l~~~~~al~~~~~~~~~~~~~~-----~~~~~~~~~~~ 132 (146)
T 1vls_A 60 KTTLAQAAAHYANFKNMTPLPAMAE--ASANVDEKYQRYQAALAELIQFLDNGNMDAYFAQPTQ-----GMQNALGEALG 132 (146)
T ss_dssp HHHHHHHHHHHHHHHHSCCCGGGHH--HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHSCHH-----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCcCCCCcHH--HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHhchHH-----HHHHHHHHHHH
Confidence 34566666667766544321 1111 1122344555556689999999999986543321111 12378999999
Q ss_pred HHHHhhh
Q 014920 307 HYIRLAI 313 (416)
Q Consensus 307 ~Yl~LaI 313 (416)
.|+.+..
T Consensus 133 ~~~~~~~ 139 (146)
T 1vls_A 133 NYARVSE 139 (146)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988764
No 23
>2qzc_A Transcriptional activator TENA-1; heme oxygenase-like fold, structural genomics, joint center structural genomics, JCSG; 1.50A {Sulfolobus solfataricus P2}
Probab=21.42 E-value=1.3e+02 Score=26.63 Aligned_cols=42 Identities=19% Similarity=0.173 Sum_probs=36.0
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHHhchHHHHHHHHHHhhhcCC
Q 014920 270 NPLFKFCRKKVLPDDIRQALMLMVNCCMKRDYLAAMDHYIRLAIGNA 316 (416)
Q Consensus 270 ~PLf~~Lr~~~l~~dil~~L~~Iv~~~q~rey~~And~Yl~LaIGNa 316 (416)
-|++..|.+|+||.+.+.. +..|.--|++..--++-+++.++
T Consensus 25 HpFv~~l~~GtL~~~~f~~-----Yl~QDy~yl~~f~r~~a~~~~ka 66 (214)
T 2qzc_A 25 HEFILKMRDGSLPLDIFRY-----YLIQDGKYVEDMLRALLIASSKG 66 (214)
T ss_dssp CHHHHHHHTSCSCHHHHHH-----HHHHHHHHHHHHHHHHHHHHTTS
T ss_pred ChHHHHHHcCCCCHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhC
Confidence 4999999999999988753 44577889999999999999887
No 24
>1m48_A Interleukin-2; four-helix bundle, small molecule complex, cytokine; HET: FRG; 1.95A {Homo sapiens} SCOP: a.26.1.2 PDB: 1m47_A* 1m49_A* 1m4c_A 1pw6_A* 1z92_A 2b5i_A* 1py2_A* 3ink_C 2erj_D 1qvn_A* 1irl_A 1m4b_A* 1m4a_A* 1nbp_A* 3qb1_A 3qaz_A
Probab=20.10 E-value=31 Score=30.17 Aligned_cols=16 Identities=38% Similarity=0.675 Sum_probs=12.0
Q ss_pred HhHHHHHHHHhhCCCC
Q 014920 356 SVKRLMTFCQRRYPTM 371 (416)
Q Consensus 356 siKRLmTf~Q~~~ptd 371 (416)
=+.|-|||||..|-+.
T Consensus 117 Fln~WItFCQsi~stl 132 (133)
T 1m48_A 117 FLNRWITFCQSIISTL 132 (133)
T ss_dssp HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhcc
Confidence 3567789999988654
Done!