BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014922
(416 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P55826|PPOC_ARATH Protoporphyrinogen oxidase, chloroplastic OS=Arabidopsis thaliana
GN=PPOX PE=2 SV=1
Length = 537
Score = 726 bits (1873), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/416 (85%), Positives = 379/416 (91%)
Query: 1 MLKMVVDSGLKDDLVLGDPNAPRFVLWNGRLRPVPSSPTDLPIFDLMSIGGKIRAGLGAL 60
ML MVVDSGLKDDLVLGDP APRFVLWNG+LRPVPS TDLP FDLMSIGGKIRAG GAL
Sbjct: 122 MLTMVVDSGLKDDLVLGDPTAPRFVLWNGKLRPVPSKLTDLPFFDLMSIGGKIRAGFGAL 181
Query: 61 GLRPPPPGHEESVEEFVRRNLGDEVFERLIEPFCSGVYAGDPSKLSMKAAFGKVWKLEQT 120
G+RP PPG EESVEEFVRRNLGDEVFERLIEPFCSGVYAGDPSKLSMKAAFGKVWKLEQ
Sbjct: 182 GIRPSPPGREESVEEFVRRNLGDEVFERLIEPFCSGVYAGDPSKLSMKAAFGKVWKLEQN 241
Query: 121 GGSIIGGTFKAIQEKNKAPKQPRDPRLPKPKGQTVGSFRKGLTMLPEAISKRLGSKVKLS 180
GGSIIGGTFKAIQE+ APK RDPRLPKP+GQTVGSFRKGL MLPEAIS RLGSKVKLS
Sbjct: 242 GGSIIGGTFKAIQERKNAPKAERDPRLPKPQGQTVGSFRKGLRMLPEAISARLGSKVKLS 301
Query: 181 WKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYVASSLLRPLSVDAAGALSQFY 240
WKLSG+ KL+SG Y+LTYETP+GLVS++S+SVVMTVPS+VAS LLRPLS AA ALS+ Y
Sbjct: 302 WKLSGITKLESGGYNLTYETPDGLVSVQSKSVVMTVPSHVASGLLRPLSESAANALSKLY 361
Query: 241 YPPVAAVSVSYPKEAIRTECLIDGELKGFGQLHPRSQGVETLGTIYSSSLFPNRAPAGRV 300
YPPVAAVS+SYPKEAIRTECLIDGELKGFGQLHPR+QGVETLGTIYSSSLFPNRAP GR+
Sbjct: 362 YPPVAAVSISYPKEAIRTECLIDGELKGFGQLHPRTQGVETLGTIYSSSLFPNRAPPGRI 421
Query: 301 LLLNYIGGATNLGILSKKESELVEAVDRDLRKMLINPNAKDPLVLGVRVWQQAIPQFLVG 360
LLLNYIGG+TN GILSK E ELVEAVDRDLRKMLI PN+ DPL LGVRVW QAIPQFLVG
Sbjct: 422 LLLNYIGGSTNTGILSKSEGELVEAVDRDLRKMLIKPNSTDPLKLGVRVWPQAIPQFLVG 481
Query: 361 HLDLLDAAKSSLRDNGYQGLFLGGNYVAGVALGRCVESAYEVASEVSNFLSQYAYK 416
H D+LD AKSSL +GY+GLFLGGNYVAGVALGRCVE AYE A EV+NF+S+YAYK
Sbjct: 482 HFDILDTAKSSLTSSGYEGLFLGGNYVAGVALGRCVEGAYETAIEVNNFMSRYAYK 537
>sp|Q9AR38|PPOC_ORYSJ Protoporphyrinogen oxidase, chloroplastic OS=Oryza sativa subsp.
japonica GN=PPOX1 PE=2 SV=1
Length = 536
Score = 697 bits (1798), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/416 (81%), Positives = 373/416 (89%)
Query: 1 MLKMVVDSGLKDDLVLGDPNAPRFVLWNGRLRPVPSSPTDLPIFDLMSIGGKIRAGLGAL 60
+L M VDSGLKDDLV GDPNAPRFVLW G+LRPVPS P DLP FDLMSI GK+RAGLGAL
Sbjct: 121 VLTMAVDSGLKDDLVFGDPNAPRFVLWEGKLRPVPSKPGDLPFFDLMSIPGKLRAGLGAL 180
Query: 61 GLRPPPPGHEESVEEFVRRNLGDEVFERLIEPFCSGVYAGDPSKLSMKAAFGKVWKLEQT 120
G+R PPPG EESVE+FVRRNLG EVFERLIEPFCSGVYAGDPSKLSMKAAFGKVW+LE T
Sbjct: 181 GVRAPPPGREESVEDFVRRNLGAEVFERLIEPFCSGVYAGDPSKLSMKAAFGKVWRLEDT 240
Query: 121 GGSIIGGTFKAIQEKNKAPKQPRDPRLPKPKGQTVGSFRKGLTMLPEAISKRLGSKVKLS 180
GGSIIGGT K IQE+ K PK PRDPRLP PKGQTV SFRKGLTMLP+AI+ RLGSKVKLS
Sbjct: 241 GGSIIGGTIKTIQERGKNPKPPRDPRLPTPKGQTVASFRKGLTMLPDAITSRLGSKVKLS 300
Query: 181 WKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYVASSLLRPLSVDAAGALSQFY 240
WKL+ + K D+ Y+L YETPEG+VS+++++VVMT+PSYVAS +LRPLS DAA ALS FY
Sbjct: 301 WKLTSITKSDNKGYALVYETPEGVVSVQAKTVVMTIPSYVASDILRPLSSDAADALSIFY 360
Query: 241 YPPVAAVSVSYPKEAIRTECLIDGELKGFGQLHPRSQGVETLGTIYSSSLFPNRAPAGRV 300
YPPVAAV+VSYPKEAIR ECLIDGEL+GFGQLHPRSQGVETLGTIYSSSLFPNRAPAGRV
Sbjct: 361 YPPVAAVTVSYPKEAIRKECLIDGELQGFGQLHPRSQGVETLGTIYSSSLFPNRAPAGRV 420
Query: 301 LLLNYIGGATNLGILSKKESELVEAVDRDLRKMLINPNAKDPLVLGVRVWQQAIPQFLVG 360
LLLNYIGG+TN GI+SK ESELVEAVDRDLRKMLINP A DPLVLGVRVW QAIPQFL+G
Sbjct: 421 LLLNYIGGSTNTGIVSKTESELVEAVDRDLRKMLINPKAVDPLVLGVRVWPQAIPQFLIG 480
Query: 361 HLDLLDAAKSSLRDNGYQGLFLGGNYVAGVALGRCVESAYEVASEVSNFLSQYAYK 416
HLD L+AAKS+L GY GLFLGGNYVAGVALGRCVE AYE AS++S++L++YAYK
Sbjct: 481 HLDHLEAAKSALGKGGYDGLFLGGNYVAGVALGRCVEGAYESASQISDYLTKYAYK 536
>sp|O24163|PPOC_TOBAC Protoporphyrinogen oxidase, chloroplastic OS=Nicotiana tabacum
GN=PPXI PE=2 SV=1
Length = 548
Score = 695 bits (1794), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 338/416 (81%), Positives = 371/416 (89%)
Query: 1 MLKMVVDSGLKDDLVLGDPNAPRFVLWNGRLRPVPSSPTDLPIFDLMSIGGKIRAGLGAL 60
ML M VD GLKDDLVLGDPNAPRFVLW G+LRPVPS TDL FDLMSI GK+RAG GA+
Sbjct: 133 MLTMAVDCGLKDDLVLGDPNAPRFVLWKGKLRPVPSKLTDLAFFDLMSIPGKLRAGFGAI 192
Query: 61 GLRPPPPGHEESVEEFVRRNLGDEVFERLIEPFCSGVYAGDPSKLSMKAAFGKVWKLEQT 120
GLRP PPGHEESVE+FVRRNLG EVFERLIEPFCSGVYAGDPSKLSMKAAFGKVWKLE+T
Sbjct: 193 GLRPSPPGHEESVEQFVRRNLGGEVFERLIEPFCSGVYAGDPSKLSMKAAFGKVWKLEET 252
Query: 121 GGSIIGGTFKAIQEKNKAPKQPRDPRLPKPKGQTVGSFRKGLTMLPEAISKRLGSKVKLS 180
GGSIIGGTFKAI+E++ PK PRDPRLPKPKGQTVGSFRKGL MLP+AIS RLGSK+KLS
Sbjct: 253 GGSIIGGTFKAIKERSSTPKAPRDPRLPKPKGQTVGSFRKGLRMLPDAISARLGSKLKLS 312
Query: 181 WKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYVASSLLRPLSVDAAGALSQFY 240
WKLS + K + G Y LTYETPEG+VSL+SRS+VMTVPSYVAS++LRPLSV AA ALS FY
Sbjct: 313 WKLSSITKSEKGGYHLTYETPEGVVSLQSRSIVMTVPSYVASNILRPLSVAAADALSNFY 372
Query: 241 YPPVAAVSVSYPKEAIRTECLIDGELKGFGQLHPRSQGVETLGTIYSSSLFPNRAPAGRV 300
YPPV AV+++YP+EAIR E L+DGELKGFGQLHPR+QGVETLGTIYSSSLFPNRAP GRV
Sbjct: 373 YPPVGAVTITYPQEAIRDERLVDGELKGFGQLHPRTQGVETLGTIYSSSLFPNRAPKGRV 432
Query: 301 LLLNYIGGATNLGILSKKESELVEAVDRDLRKMLINPNAKDPLVLGVRVWQQAIPQFLVG 360
LLLNYIGGA N ILSK ES+LVE VDRDLRKMLI P A+DPLV+GVRVW QAIPQFLVG
Sbjct: 433 LLLNYIGGAKNPEILSKTESQLVEVVDRDLRKMLIKPKAQDPLVVGVRVWPQAIPQFLVG 492
Query: 361 HLDLLDAAKSSLRDNGYQGLFLGGNYVAGVALGRCVESAYEVASEVSNFLSQYAYK 416
HLD L AK+++ DNG +GLFLGGNYV+GVALGRCVE AYEVASEV+ FLS+YAYK
Sbjct: 493 HLDTLSTAKAAMNDNGLEGLFLGGNYVSGVALGRCVEGAYEVASEVTGFLSRYAYK 548
>sp|P56601|PPOX_MYXXA Protoporphyrinogen oxidase OS=Myxococcus xanthus GN=hemY PE=1 SV=1
Length = 471
Score = 167 bits (422), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 126/388 (32%), Positives = 193/388 (49%), Gaps = 19/388 (4%)
Query: 18 DPNAPR-FVLWNGRLRPVPSSPTDLPIFDLMSIGGKIRAGLGALGLRPPPPGHEESVEEF 76
DP A R +V GRLR VP+SP D++ +G ++R G L R P G +ES+ F
Sbjct: 89 DPAAKRRYVYTRGRLRSVPASPPAFLASDILPLGARLRVA-GELFSRRAPEGVDESLAAF 147
Query: 77 VRRNLGDEVFERLIEPFCSGVYAGDPSKLSMKAAFGKVWKLEQTGGSIIGGTFKAIQEKN 136
RR+LG + L++ +G+YAGD +LS+ A F + K+E+ S+I G +A
Sbjct: 148 GRRHLGHRATQVLLDAVQTGIYAGDVEQLSVAATFPMLVKMEREHRSLILGAIRA----Q 203
Query: 137 KAPKQPRDPRLPKPK-GQTVGSFRKGLTMLPEAISKRLGSKVKLSWKLSGVKKLDSGEYS 195
KA +Q P PK + +F GL +L +A++ LG + ++ G+ + D G +
Sbjct: 204 KAQRQAALPAGTAPKLSGALSTFDGGLQVLIDALAASLGDAAHVGARVEGLAREDGG-WR 262
Query: 196 LTYETPEGLVSLRSRSVVMTVPSYVASSLLRPLSVDAAGALSQFYYPPVAAVSVSYPKEA 255
L E L VV+ P++ + LLRPL A ++ Y P+A V + +
Sbjct: 263 LIIEEHGRRAELSVAQVVLAAPAHATAKLLRPLDDALAALVAGIAYAPIAVVHLGFDAGT 322
Query: 256 IRTECLIDGELKGFGQLHPRSQGVETLGTIYSSSLFPNRAPAGRVLLLNYIGGATNLGIL 315
+ GFG L P + LG I++S+ FP RA GRVL +GGA G++
Sbjct: 323 LPAP-------DGFGFLVPAEEQRRMLGAIHASTTFPFRAEGGRVLYSCMVGGARQPGLV 375
Query: 316 SKKESELVEAVDRDLRKMLINPNAKDPLVLGVRVWQQAIPQFLVGHLDLLDAAKSSLRDN 375
+ E L A+ R+ K L A+ P V W IPQ+ +GHL+ + A ++L+
Sbjct: 376 EQDEDALA-ALAREELKALAGVTAR-PSFTRVFRWPLGIPQYNLGHLERVAAIDAALQR- 432
Query: 376 GYQGLFLGGNYVAGVALGRCVESAYEVA 403
GL L GN GV L C+ +A ++A
Sbjct: 433 -LPGLHLIGNAYKGVGLNDCIRNAAQLA 459
>sp|P32397|PPOX_BACSU Protoporphyrinogen oxidase OS=Bacillus subtilis (strain 168)
GN=hemY PE=1 SV=1
Length = 470
Score = 154 bits (390), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 121/416 (29%), Positives = 204/416 (49%), Gaps = 31/416 (7%)
Query: 3 KMVVDSGLKDDLVLGDPNAPRFVLWNGRLRPVPSS-----PTDLPIF---DLMSIGGKIR 54
++V D GL + L++ + +VL N L P+P PT + F L S+ GK R
Sbjct: 76 QLVKDLGL-EHLLVNNATGQSYVLVNRTLHPMPKGAVMGIPTKIAPFVSTGLFSLSGKAR 134
Query: 55 AGLGALGLRPPPPGHEESVEEFVRRNLGDEVFERLIEPFCSGVYAGDPSKLSMKAAFGKV 114
A + + L ++S+ EF RR +GDEV E LIEP SG+YAGD KLS+ + F +
Sbjct: 135 AAMDFI-LPASKTKDDQSLGEFFRRRVGDEVVENLIEPLLSGIYAGDIDKLSLMSTFPQF 193
Query: 115 WKLEQTGGSIIGGTFKAIQEKNKAPKQPRDPRLPKPKGQTVGSFRKGLTMLPEAISKRLG 174
++ EQ S+I G K P+ K +GQ + GL L E I K+L
Sbjct: 194 YQTEQKHRSLILGM------KKTRPQGSGQQLTAKKQGQ-FQTLSTGLQTLVEEIEKQL- 245
Query: 175 SKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYVASSLLRPLSVDAAG 234
K+ +K + V KL + E G V+L + SV++T P A+ +L L A
Sbjct: 246 -KLTKVYKGTKVTKLSHSGSCYSLELDNG-VTLDADSVIVTAPHKAAAGMLSELP--AIS 301
Query: 235 ALSQFYYPPVAAVSVSYPKEAIRTECLIDGELKGFGQLHPRSQGVETLGTIYSSSLFPNR 294
L + VA V++ +P+ +++ E +G G + R+ +++ +P+
Sbjct: 302 HLKNMHSTSVANVALGFPEGSVQMEH------EGTGFVISRNSDFAITACTWTNKKWPHA 355
Query: 295 APAGRVLLLNYIGGATNLGILSKKESELVEAVDRDLRKMLINPNAKDPLVLGVRVWQQAI 354
AP G+ LL Y+G A + I+ +++++ V DL+K++ N N +P + V W +++
Sbjct: 356 APEGKTLLRAYVGKAGDESIVDLSDNDIINIVLEDLKKVM-NING-EPEMTCVTRWHESM 413
Query: 355 PQFLVGHLDLLDAAKSSLRDNGYQGLFLGGNYVAGVALGRCVESAYEVASEVSNFL 410
PQ+ VGH + + +L + Y G+++ G GV + C++ S+ +L
Sbjct: 414 PQYHVGHKQRIKELREALA-SAYPGVYMTGASFEGVGIPDCIDQGKAAVSDALTYL 468
>sp|O24164|PPOM_TOBAC Protoporphyrinogen oxidase, mitochondrial OS=Nicotiana tabacum
GN=PPXII PE=1 SV=1
Length = 504
Score = 148 bits (374), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 128/439 (29%), Positives = 212/439 (48%), Gaps = 51/439 (11%)
Query: 2 LKMVVDS-GLKDDLVLGDPNAPRFVLWNGRLRPVPSSPTDLPIFDLMSIGGKIRAGLGAL 60
+ ++DS GL++ R++ NG +PS+P DL + +S G K++ L +
Sbjct: 76 VTFLIDSLGLREKQQFPLSQNKRYIARNGTPVLLPSNPIDLIKSNFLSTGSKLQMLLEPI 135
Query: 61 -----GLRPPPPGHEESVEEFVRRNLGDEVFERLIEPFCSGVYAGDPSKLSMKAAFGKVW 115
L HE SV F +R+ G EV + LI+PF +G GDP LSM +F ++W
Sbjct: 136 LWKNKKLSQVSDSHE-SVSGFFQRHFGKEVVDYLIDPFVAGTCGGDPDSLSMHHSFPELW 194
Query: 116 KLEQTGGSIIGGTFKA-IQEKNKAPKQPRDPRLPKPKGQTVGSFRKGLTMLPEAISK--- 171
LE+ GS+I G ++ + KN+ + P K + + SF G+ L +AI K
Sbjct: 195 NLEKRFGSVILGAIRSKLSPKNEKKQGPPKTSANKKRQRGSFSFLGGMQTLTDAICKDLR 254
Query: 172 ----RLGSKV-KLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSR--SVVMTVPSYVASSL 224
RL S+V +LS + +DS +S+ +P S +V+MT P S+
Sbjct: 255 EDELRLNSRVLELSCSCTEDSAIDS--WSIISASPHKRQSEEESFDAVIMTAPLCDVKSM 312
Query: 225 L-----RPLSVDAAGALSQFYYPPVAAVSVSYPKEAIRTECLIDGELKGFGQLHP---RS 276
P ++ + + Y P++ V ++ +E ++ L+GFG L P +
Sbjct: 313 KIAKRGNPFLLN---FIPEVDYVPLSVVITTFKRENVKY------PLEGFGVLVPSKEQQ 363
Query: 277 QGVETLGTIYSSSLFPNRAPAGRVLLLNYIGGATNLGILSKKESELVEAVDRDLRKMLIN 336
G++TLGT++SS +FP+RAP L ++GG+ N + +EL E V DL+++L
Sbjct: 364 HGLKTLGTLFSSMMFPDRAPNNVYLYTTFVGGSRNRELAKASRTELKEIVTSDLKQLL-- 421
Query: 337 PNAKDPLVLGVRVWQQAIPQFLVGH-----LDLLDAAKSSLRDNGYQGLFLGGNYVAGVA 391
+P + W +A P L GH LD +D + +L GLF GN+ G++
Sbjct: 422 GAEGEPTYVNHLYWSKAFP--LYGHNYDSVLDAIDKMEKNL-----PGLFYAGNHRGGLS 474
Query: 392 LGRCVESAYEVASEVSNFL 410
+G+ + S A V ++L
Sbjct: 475 VGKALSSGCNAADLVISYL 493
>sp|Q94IG7|PPOCM_SPIOL Protoporphyrinogen oxidase, chloroplastic/mitochondrial OS=Spinacia
oleracea GN=POX2 PE=1 SV=1
Length = 531
Score = 146 bits (368), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 115/426 (26%), Positives = 200/426 (46%), Gaps = 37/426 (8%)
Query: 7 DSGLKDDLVLGDPNAPRFVLWNGRLRPVPSSPTDLPIFDLMSIGGKIRAGLGAL------ 60
D G+++ L L R++ +G +PS+P L +++S K++ L
Sbjct: 111 DLGIREKLQLPISQNKRYIARDGLPVLLPSNPVALLKSNILSAKSKLQIMLEPFLWKKHN 170
Query: 61 GLRPPPPGHEESVEEFVRRNLGDEVFERLIEPFCSGVYAGDPSKLSMKAAFGKVWKLEQT 120
G + +ESV EF R+ G E + LI+PF +G GDP LSM+ AF ++W +E
Sbjct: 171 GAKVSDENAQESVAEFFERHFGKEFVDYLIDPFVAGTSGGDPQSLSMRHAFPELWNIENR 230
Query: 121 GGSIIGGTFKAIQEKNKAPKQPRDPRLPKPKGQTVGSFRKGLTMLPEAISKRLGSK---- 176
GS+I G ++ K + KP+ + SF+ G+ L + I K G
Sbjct: 231 FGSVISGFIQSKLSSKKEKGGEKQSSNKKPRVRGSFSFQGGMQTLVDTICKEFGEDELKL 290
Query: 177 ----VKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYVASSLL-----RP 227
+ LS+ +G L S +S++ + + +VV+T P L P
Sbjct: 291 QSEVLSLSYSHNG--SLTSENWSVSSMSNSTIQDQPYDAVVVTAPINNVKELKIMKVENP 348
Query: 228 LSVDAAGALSQFYYPPVAAVSVSYPKEAIRTECLIDGELKGFGQLHPRSQ---GVETLGT 284
S+D +S P++ + ++ K ++ L+GFG L P ++ G++TLGT
Sbjct: 349 FSLDFIPEVSCL---PLSVIITTFKKTNVKR------PLEGFGVLVPSNEQHNGLKTLGT 399
Query: 285 IYSSSLFPNRAPAGRVLLLNYIGGATNLGILSKKESELVEAVDRDLRKMLINPNAKDPLV 344
++SS +FP+RAP+ L ++GG+ N + EL + V DL+++L +P
Sbjct: 400 LFSSMMFPDRAPSDVYLYTTFVGGSRNRELAKASTDELKQIVSSDLQQLL--GTEGEPTF 457
Query: 345 LGVRVWQQAIPQFLVGHLDLLDAAKSSLRDNGYQGLFLGGNYVAGVALGRCVESAYEVAS 404
+ W +A P + + +L A + RD GLF GN+ G+++G+ + S Y+ A
Sbjct: 458 VNHFYWSKAFPLYGRNYDSVLRAIEKMERD--LPGLFYAGNHKGGLSVGKSIASGYKAAE 515
Query: 405 EVSNFL 410
++L
Sbjct: 516 LAISYL 521
>sp|P51175|PPOX_MOUSE Protoporphyrinogen oxidase OS=Mus musculus GN=Ppox PE=2 SV=1
Length = 477
Score = 97.8 bits (242), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 119/428 (27%), Positives = 184/428 (42%), Gaps = 52/428 (12%)
Query: 2 LKMVVDSGLKDDL--VLGDPNAP--RFVLWNGRLRPVPSS---------PTDLPIFDLMS 48
L +V + GL+ ++ V GD A RF+ G L P+PS P P+F
Sbjct: 72 LLLVSELGLESEVLPVRGDHPAAQNRFLYVGGTLHPLPSGLRGLLRPSPPFSKPLF---- 127
Query: 49 IGGKIRAGLGALGLRPPPPGHEESVEEFVRRNLGDEVFERLIEPFCSGVYAGDPSKLSMK 108
AGL L L+P +E+V F +R LG EV ++ C GV+AG+ +LS++
Sbjct: 128 -----WAGLREL-LKPRGKEPDETVHSFAQRRLGPEVASLAMDSLCRGVFAGNSRELSIR 181
Query: 109 AAFGKVWKLEQTGGSIIGGTF----KAIQEKNKAPKQPRDPRLPKPKGQTVGSFRKGLTM 164
+ F +++ EQT SI+ G ++ Q + +Q R R + S R GL +
Sbjct: 182 SCFPSLFQAEQTHRSILLGLLLGAGQSPQPDSSLIRQARAERWSQ------WSLRGGLEV 235
Query: 165 LPEAISKRLGSK---VKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYVA 221
LP+A+ L SK V + G+ G + ++ G SL + ++ +P+
Sbjct: 236 LPQALHNHLASKGVTVLSGQPVCGLSLQPEGRWKVSL----GDSSLEADHIISAIPASEL 291
Query: 222 SSLLRPLSVDAAGALSQFYYPPVAAVSVSYPKEAIRTECLIDGELKGFGQLHPRSQGVET 281
S LL + A LS VA V++ Y R CL ++GFG L P S+
Sbjct: 292 SKLLPAEAAPLARILSTIKAVSVAVVNLQY-----RGACL---PVQGFGHLVPSSEDPTV 343
Query: 282 LGTIYSSSLFPNRAPAGRVLLLNYIGGATNLGILSKKESELVEAVDRDLRKMLINPN--- 338
LG +Y S FP + L + + G L L +L + + +
Sbjct: 344 LGIVYDSVAFPEQDGNPPSLRVTVMLGGYWLQKLKAAGHQLSPELFQQQAQEAAATQLGL 403
Query: 339 AKDPLVLGVRVWQQAIPQFLVGHLDLLDAAKSSLRDNGYQGLFLGGNYVAGVALGRCVES 398
+ P V + + IPQ+ +GH LD+A L L L G GVA+ C+ES
Sbjct: 404 KEPPSHCLVHLHKNCIPQYTIGHWQKLDSAMQFLTAQRLP-LTLAGASYEGVAVNDCIES 462
Query: 399 AYEVASEV 406
+ A V
Sbjct: 463 GRQAAVAV 470
>sp|P50336|PPOX_HUMAN Protoporphyrinogen oxidase OS=Homo sapiens GN=PPOX PE=1 SV=1
Length = 477
Score = 94.7 bits (234), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 106/395 (26%), Positives = 170/395 (43%), Gaps = 53/395 (13%)
Query: 28 NGRLRPVPSSPTDLPIFDLMSIGGKIRAGLGALGLRPPPPGHEESVEEFVRRNLGDEVFE 87
G LRP P P P+F AGL L +P +E+V F +R LG EV
Sbjct: 113 RGLLRPSP--PFSKPLF---------WAGLREL-TKPRGKEPDETVHSFAQRRLGPEVAS 160
Query: 88 RLIEPFCSGVYAGDPSKLSMKAAFGKVWKLEQTGGSIIGGTFKAIQEKNKAPKQPRDPRL 147
++ C GV+AG+ +LS+++ F +++ EQT SI + + P QP +
Sbjct: 161 LAMDSLCRGVFAGNSRELSIRSCFPSLFQAEQTHRSI---LLGLLLGAGRTP-QPDSALI 216
Query: 148 PKPKGQ--TVGSFRKGLTMLPEAISKRLGSK---VKLSWKLSGVKKLDSGEYSLTYETPE 202
+ + + S R GL MLP+A+ L S+ V + G+ G + ++
Sbjct: 217 RQALAERWSQWSLRGGLEMLPQALETHLTSRGVSVLRGQPVCGLSLQAEGRWKVSLRDS- 275
Query: 203 GLVSLRSRSVVMTVPSYVASSLLRPLSVDAAGALSQFYYPPVAAVSVSYPKEAIRTECLI 262
SL + V+ +P+ V S LL + A ALS VA V++ Y +
Sbjct: 276 ---SLEADHVISAIPASVLSELLPAEAAPLARALSAITAVSVAVVNLQYQGAHL------ 326
Query: 263 DGELKGFGQLHPRSQGVETLGTIYSSSLFPNRAPAGRVLLLNYIGGATNLGILS------ 316
++GFG L P S+ LG +Y S FP + + L + + G + L L
Sbjct: 327 --PVQGFGHLVPSSEDPGVLGIVYDSVAFPEQDGSPPGLRVTVMLGGSWLQTLEASGCVL 384
Query: 317 -----KKESELVEAVDRDLRKMLINPNAKDPLVLGVRVWQQAIPQFLVGHLDLLDAAKSS 371
++ ++ A L++M P V + + IPQ+ +GH L++A+
Sbjct: 385 SQELFQQRAQEAAATQLGLKEM--------PSHCLVHLHKNCIPQYTLGHWQKLESARQF 436
Query: 372 LRDNGYQGLFLGGNYVAGVALGRCVESAYEVASEV 406
L + L L G GVA+ C+ES + A V
Sbjct: 437 LTAHRLP-LTLAGASYEGVAVNDCIESGRQAAVSV 470
>sp|Q54DT8|PPOX_DICDI Protoporphyrinogen oxidase OS=Dictyostelium discoideum GN=ppox PE=3
SV=1
Length = 532
Score = 94.7 bits (234), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 95/450 (21%), Positives = 189/450 (42%), Gaps = 65/450 (14%)
Query: 9 GLKDDLVLGDPNAP-RFVLWNGRLRPVPSSPTDLPIFDLMSIGGKIRAGLGALGLRPP-- 65
G+ +D++ N+ +FVL +G+ + +P + +FD++ + + + L+ P
Sbjct: 91 GISNDIIFSSANSNGKFVLLDGKPKEIPMTS----LFDIIKFS--FKHSIVSSILKEPFK 144
Query: 66 ---------PPGHEESVEEFVRRNLGDEVFERLIEPFCSGVYAGDPSKLSMKAAFGKVWK 116
P +ESV +F R LG + + IEP G+Y GD + LS+K+ F +
Sbjct: 145 KVPSQVKEMDPNWDESVHDFFSRRLGKTMTKTFIEPTILGIYGGDYTNLSIKSTFKRAAL 204
Query: 117 LEQTGGSIIGGTFKAIQEKN-KAPKQPRDPRLPKPKGQ------------TVGSFRK-GL 162
LE GG I+G FK+ ++K + + RL K + V SF++ GL
Sbjct: 205 LEPFGGLILGSLFKSKKQKQFELDLDKNEKRLLPSKNELTELFDKDTDKTNVFSFKENGL 264
Query: 163 TMLPEAISKRLGS----KVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPS 218
+ + + + + S K+ LS + ++K D +L +G + ++ T+P
Sbjct: 265 SRMIQKLKSLIESDSLTKLYLSTSIVEIEK-DVTNGTLKVTDNKG-NQYQYDQLISTIPL 322
Query: 219 YVASSLLRPLSVDAAGALSQFYYPPVAAVSVSYPKEAIRTECLIDGELKGFGQLHPRSQG 278
+ + + L Y +A +++ Y + + D KGFG L P +
Sbjct: 323 NQLAPMFKKSDSKLYQLLQSVNYTSIAVINLIYKSNKNVVKIISD---KGFGYLVPSKEN 379
Query: 279 VETLGTIYSSSLFPN--------------RAPAGRVLLLNYIGGATN--------LGILS 316
+G + S+ FP + ++ IGG + + +
Sbjct: 380 QSVIGVCFDSNTFPEFVNNNNNNNNDNDNGNEKDQSIITVMIGGNNGIKDRNDNWIDVTN 439
Query: 317 KKESELVEAVDRDLRKMLINPNAKDPLVLGVRVWQQAIPQFLVGHLDLLDAAKSSLRDNG 376
+ +L++ + L K+L P V ++ IP + +GH +L++ ++ + N
Sbjct: 440 TSKDKLLDIALKHLDKVL--DIESSPDFTNVSIYDNGIPHYNIGHQNLINEIQNHITKNY 497
Query: 377 YQGLFLGGNYVAGVALGRCVESAYEVASEV 406
L LGGN + GV + + + ++ + +
Sbjct: 498 GTTLLLGGNSIDGVGINDSIHKSKQLINSL 527
>sp|Q60HD5|PPOX_MACFA Protoporphyrinogen oxidase OS=Macaca fascicularis GN=PPOX PE=2 SV=1
Length = 477
Score = 90.5 bits (223), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 104/388 (26%), Positives = 167/388 (43%), Gaps = 39/388 (10%)
Query: 28 NGRLRPVPSSPTDLPIFDLMSIGGKIRAGLGALGLRPPPPGHEESVEEFVRRNLGDEVFE 87
G LRP P P P+F AGL L +P +E+V F +R LG EV
Sbjct: 113 RGLLRPSP--PFSKPLF---------WAGLREL-TKPRGKEPDETVHSFAQRRLGPEVAS 160
Query: 88 RLIEPFCSGVYAGDPSKLSMKAAFGKVWKLEQTGGSIIGGTFKAIQEKNKAPKQPRDPRL 147
++ C GV+AG+ +LS+++ F +++ EQT S+ + + P QP +
Sbjct: 161 LAMDSLCRGVFAGNSRELSIRSCFPSLFQAEQTHRSV---LLGLLLGAGRTP-QPDSALI 216
Query: 148 PKPKGQ--TVGSFRKGLTMLPEAISKRLGSK---VKLSWKLSGVKKLDSGEYSLTYETPE 202
+ + + S R GL MLP+A+ L S+ V + G+ G + ++
Sbjct: 217 RQALAERWSQWSLRGGLEMLPQALETHLTSRGVSVLRGQPVCGLSLQAEGRWKVSLRDS- 275
Query: 203 GLVSLRSRSVVMTVPSYVASSLLRPLSVDAAGALSQFYYPPVAAVSVSYPKEAIRTECLI 262
SL + V+ +P+ V S LL + A ALS VA V++ Y +
Sbjct: 276 ---SLEADHVISAIPASVLSELLPAEAAPLARALSAITAVSVAVVNLQYQGAHL------ 326
Query: 263 DGELKGFGQLHPRSQGVETLGTIYSSSLFPNRAPAGRVLLLNYIGGATNLGILSKK---- 318
++GFG L P S+ LG +Y S FP + + L + + G + L L
Sbjct: 327 --PVQGFGHLVPSSEDPGVLGIVYDSVAFPEQDGSPPGLRVTVMLGGSWLQTLEASGCVL 384
Query: 319 ESELVEAVDRDLRKMLINPNAKDPLVLGVRVWQQAIPQFLVGHLDLLDAAKSSLRDNGYQ 378
EL + ++ + L V + + IPQ+ +GH L++A+ L +
Sbjct: 385 SQELFQQRAQEAAAAQLGLKELPSHCL-VHLHKNCIPQYTLGHWQKLESARQFLAAHRLP 443
Query: 379 GLFLGGNYVAGVALGRCVESAYEVASEV 406
L L G GVA+ C+ES + A V
Sbjct: 444 -LTLAGASYEGVAVNDCIESGRQAAVSV 470
>sp|Q10062|PPOX_SCHPO Protoporphyrinogen oxidase OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=hem14 PE=3 SV=1
Length = 490
Score = 88.6 bits (218), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 105/443 (23%), Positives = 194/443 (43%), Gaps = 64/443 (14%)
Query: 2 LKMVVDSGLKDDLVLGDPNAP----RFVLWNGRLRPVPSSPTDLPIFDLMSIGGKIRAGL 57
L ++ G++D L+ N+P R++ + RL +PSS I G I++ +
Sbjct: 76 LDLISKLGIEDKLLRISSNSPSAKNRYIYYPDRLNEIPSS-----------ILGSIKSIM 124
Query: 58 GALGLRPPP-------------PGHEESVEEFVRRNLGDEVFERLIEPFCSGVYAGDPSK 104
LRP P +ESV F+RR G V +R++ +G+YAGD +
Sbjct: 125 QP-ALRPMPLAMMLEPFRKSKRDSTDESVGSFMRRRFGKNVTDRVMSAMINGIYAGDLND 183
Query: 105 LSMKAA-FGKVWKLEQTGGSIIGGTFKAIQEK---NKAPKQPRDPRLPKPKGQTVGSFRK 160
LSM ++ FG + K+E+ G+I G +A+ + + A K + L +PK + + K
Sbjct: 184 LSMHSSMFGFLAKIEKKYGNITLGLIRALLAREILSPAEKALKAALLAEPKTAELSNSMK 243
Query: 161 GLTMLP-----EAISKRLGSKVKLSWKLSGVK-KLDSGEYSLTYETPEGLVSLRSRSVVM 214
+M E I+ + ++K K+ VK L+ +L + LV + ++
Sbjct: 244 STSMFAFKEGIETITLSIADELK---KMPNVKIHLNKPAKTLVPHKTQSLVDVNGQAYEY 300
Query: 215 TVPSYVASSLLRPLSVDAAGALSQFYYPPVAAVSVSYPKEAIRTECLIDGELKGFGQLHP 274
V + + +L +S + Y V+V Y + ++GFG L P
Sbjct: 301 VVFANSSRNLENLISCPKMETPTSSVY----VVNVYYKDPNVL-------PIRGFGLLIP 349
Query: 275 R---SQGVETLGTIYSSSLFPNRAPAGRVLLLNYIGGAT---NLGILSKKESELVEAVDR 328
+ LG ++ S N +V ++ +GG+ N ++ E V +
Sbjct: 350 SCTPNNPNHVLGIVFDSEQ-NNPENGSKVTVM--MGGSAYTKNTSLIPTNPEEAVNNALK 406
Query: 329 DLRKMLINPNAKDPLVLGVRVWQQAIPQFLVGHLDLLDAAKSSLRDNGYQGLFLGGNYVA 388
L+ L + P + + Q IPQ+ VGH D L++ KS + N + L G++
Sbjct: 407 ALQHTL--KISSKPTLTNATLQQNCIPQYRVGHQDNLNSLKSWIEKNMGGRILLTGSWYN 464
Query: 389 GVALGRCVESAYEVASEVSNFLS 411
GV++G C+ + + A ++++ ++
Sbjct: 465 GVSIGDCIMNGHSTARKLASLMN 487
>sp|O32434|PPOX_PROFF Protoporphyrinogen oxidase OS=Propionibacterium freudenreichii
subsp. freudenreichii GN=hemY PE=3 SV=1
Length = 527
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 109/439 (24%), Positives = 178/439 (40%), Gaps = 59/439 (13%)
Query: 2 LKMVVDSGLKDDLVLGDPNAPRFV--LWNGRLRPVPSS-----PTDLPIF---DLMSIGG 51
LK++ + GL D ++ P R V L G+LRP+P+ PT + F ++S
Sbjct: 90 LKLIEELGLSDQVIA--PGGGRRVSLLSRGKLRPMPAGMGMVLPTRMWPFVTTTVLSWPD 147
Query: 52 KIRAGLGALGLRPPPPGHEESVEEFVRRNLGDEVFERLIEPFCSGVYAGDPSKLSMKAAF 111
KIRAGL + R P H+ ++ F+R+ LGD + R +P G+Y +LS+ A
Sbjct: 148 KIRAGLDLVIPRRLP-DHDVAIGAFLRQRLGDGIVRRFADPMVGGIYGAGIDELSLDAVL 206
Query: 112 GKVWKLEQTGGSIIGGTFKA-------------------IQEKNKAPKQPRDPRLPKPKG 152
+ E+ S++ + + Q P
Sbjct: 207 PSLRDNERDHRSLMVASLAGGRASRRAARQRAAQNNAQQNSSHQNSTGQNNSAGTRGPAA 266
Query: 153 QTVGSFRKGLTMLPEAISKRLGSKVKLSWKLSGVKKLDSGEYSLT----YETPEGLVSLR 208
+ R GL L +A+ +L + GV+ L + L +G V L
Sbjct: 267 SPFRTLRGGLGQLIDALVDQL--------RAGGVELLVNTSVDLLGRDGVHLSDGRV-LP 317
Query: 209 SRSVVMTVPSYVASSLLRPLSVDAAGALSQFYYPPVAAVSVSYPKEAIRTECLIDGELKG 268
+ +VV+ ++ LLRP AA AL+Q VS+++P A G L+
Sbjct: 318 ADAVVLAGGVASSARLLRPQLPAAARALAQIPLASTTIVSLAWPVSAFDVAPDSQGWLE- 376
Query: 269 FGQLHPRSQGVETLGTIYSSSLFPNRAPAGRVLLLNYIGGATNLGILSKK-ESELVEAVD 327
+ G SS F RAP G VL+ ++ G L+ + EL+ AV
Sbjct: 377 -------ADAGPVSGLTASSIKFAGRAPDGSVLMRVFV--PDKRGPLTDAPDDELLSAVI 427
Query: 328 RDLRKMLINPNAKDPLVLGVRVWQQAIPQFLVGHLDLLDAAKSSLRDNGYQGLFLGGNYV 387
+R +L +P + + W + +P++ VGHL+ S+L + + G+ +
Sbjct: 428 DHVRPLL--GVHGEPGLTQITRWHKVMPKYTVGHLERAAVVDSTLAEQ-RPTWAVAGSAL 484
Query: 388 AGVALGRCVESAYEVASEV 406
GV L C+ A A EV
Sbjct: 485 HGVGLPDCISDARHSADEV 503
>sp|Q50008|PPOX_MYCLE Protoporphyrinogen oxidase OS=Mycobacterium leprae (strain TN)
GN=hemY PE=3 SV=1
Length = 451
Score = 58.5 bits (140), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 80/369 (21%), Positives = 149/369 (40%), Gaps = 42/369 (11%)
Query: 34 VPSSPTDLP-IFDLMSIGGKIRAGLGALGLRPPP--PGHEESVEEFVRRNLGDEVFERLI 90
+PSS T + + D ++ A +GA +RP PG + ++ E V G++ RL+
Sbjct: 109 IPSSATSVAGLVDDATV-----ARIGAEAVRPLSWEPGSDPAMAELVADRFGEQAVARLV 163
Query: 91 EPFCSGVYAGDPSKLSMKAAFGKVWKLEQTGGSIIGGTFKAIQEKNKAPKQPRDPRLPKP 150
+P GVYAG + + ++A V G + + +A+++ P
Sbjct: 164 DPLLGGVYAGSAATIGLRAGAPSVAAALDCGATSL---MEAVRQGLP----------PVA 210
Query: 151 KGQTVGSFRKGLTMLPEAISKRLGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSR 210
G G+ G +L + + +R +L W + V LD G T G +
Sbjct: 211 AGPVFGALDGGYQVLIDELVRR----SRLQWVAATVVGLDRGTCGWTLVDDTG-ACWSAD 265
Query: 211 SVVMTVPSYVASSLLRPLSVDAAGALSQFYYPPVAAVSVSYPKEAIRTECLIDGELKGFG 270
V++ VP+ LL+ ++ A S+ A V++S P++ + G
Sbjct: 266 GVILAVPAPRLVRLLQQIAPRTVAAASRIVSASSAVVALSVPRDTTFPQ--------NSG 317
Query: 271 QLHPRSQGVETLGTIYSSSLFPNRAPAGRVLLLNYIGGATNLGILSKKESELVEAVDRDL 330
L + + SS + + V L G + + + EL+ DL
Sbjct: 318 VLVASGERLRAKAVTLSSRKWGLQGDTQLVRL--SFGKFGDQVASTASDDELLAWAVSDL 375
Query: 331 RKMLINPNAKDPLVLGVRVWQQAIPQFLVGHLDLLDAAKSSLRDNGYQGLFLGGNYVAGV 390
+ DP+ + V+ W A+PQ+ GH DL+ ++ L L + G+++ G+
Sbjct: 376 AAVF--DVTVDPVDVCVQRWIDAMPQYGPGHADLVAEVRAGLPPT----LVVAGSHMDGI 429
Query: 391 ALGRCVESA 399
+ C+ +A
Sbjct: 430 GVPACISAA 438
>sp|P0A5A7|PPOX_MYCTU Protoporphyrinogen oxidase OS=Mycobacterium tuberculosis GN=hemY
PE=3 SV=1
Length = 452
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 81/345 (23%), Positives = 146/345 (42%), Gaps = 41/345 (11%)
Query: 68 GHEESVEEFVRRNLGDEVFERLIEPFCSGVYAGDPSKLSMK-AAFGKVWKLEQTGGSIIG 126
G + +V + V GD+V R ++P SGVYAG + + ++ AA L++ S+
Sbjct: 141 GSDPAVADLVADRFGDQVVARSVDPLLSGVYAGSAATIGLRAAAPSVAAALDRGATSVTD 200
Query: 127 GTFKAIQEKNKAPKQPRDPRLPKPKGQTVGSFRKGLTMLPEAISKRLGSKVKLSWKLSGV 186
+A+ P G G+ G +L + + +R ++ W + V
Sbjct: 201 AVRQALP--------------PGSGGPVFGALDGGYQVLLDGLVRR----SRVHWVRARV 242
Query: 187 KKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYVASSLLRPLSVDAAGALSQFYYPPVAA 246
+L+ G + L ET ++ +V++ VP+ + L+ ++ A Q A
Sbjct: 243 VQLERG-WVLRDETGG---RWQADAVILAVPAPRLARLVDGIAPRTHAAARQIVSASSAV 298
Query: 247 VSVSYPKEAIRTECLIDGELKGFGQLHPRSQGVETLGTIYSSSLFPNRAPAGRVLLLNY- 305
V+++ P C G L G P ++ + SS + R G V LL
Sbjct: 299 VALAVPGGTAFPHC--SGVLVA-GDESPHAKAIT-----LSSRKWGQR---GDVALLRLS 347
Query: 306 IGGATNLGILSKKESELVEAVDRDLRKMLINPNAKDPLVLGVRVWQQAIPQFLVGHLDLL 365
G + L+ + +L+ DL + + A DP+ + VR W +A+PQ+ GH D++
Sbjct: 348 FGRFGDEPALTASDDQLLAWAADDL--VTVFGVAVDPVDVRVRRWIEAMPQYGPGHADVV 405
Query: 366 DAAKSSLRDNGYQGLFLGGNYVAGVALGRCVESAYEVASEVSNFL 410
+ LR L + G+Y+ G+ + CV +A + V L
Sbjct: 406 ----AELRAGLPPTLAVAGSYLDGIGVPACVGAAGRAVTSVIEAL 446
>sp|P0A5A8|PPOX_MYCBO Protoporphyrinogen oxidase OS=Mycobacterium bovis (strain ATCC
BAA-935 / AF2122/97) GN=hemY PE=3 SV=1
Length = 452
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 81/345 (23%), Positives = 146/345 (42%), Gaps = 41/345 (11%)
Query: 68 GHEESVEEFVRRNLGDEVFERLIEPFCSGVYAGDPSKLSMK-AAFGKVWKLEQTGGSIIG 126
G + +V + V GD+V R ++P SGVYAG + + ++ AA L++ S+
Sbjct: 141 GSDPAVADLVADRFGDQVVARSVDPLLSGVYAGSAATIGLRAAAPSVAAALDRGATSVTD 200
Query: 127 GTFKAIQEKNKAPKQPRDPRLPKPKGQTVGSFRKGLTMLPEAISKRLGSKVKLSWKLSGV 186
+A+ P G G+ G +L + + +R ++ W + V
Sbjct: 201 AVRQALP--------------PGSGGPVFGALDGGYQVLLDGLVRR----SRVHWVRARV 242
Query: 187 KKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYVASSLLRPLSVDAAGALSQFYYPPVAA 246
+L+ G + L ET ++ +V++ VP+ + L+ ++ A Q A
Sbjct: 243 VQLERG-WVLRDETGG---RWQADAVILAVPAPRLARLVDGIAPRTHAAARQIVSASSAV 298
Query: 247 VSVSYPKEAIRTECLIDGELKGFGQLHPRSQGVETLGTIYSSSLFPNRAPAGRVLLLNY- 305
V+++ P C G L G P ++ + SS + R G V LL
Sbjct: 299 VALAVPGGTAFPHC--SGVLVA-GDESPHAKAIT-----LSSRKWGQR---GDVALLRLS 347
Query: 306 IGGATNLGILSKKESELVEAVDRDLRKMLINPNAKDPLVLGVRVWQQAIPQFLVGHLDLL 365
G + L+ + +L+ DL + + A DP+ + VR W +A+PQ+ GH D++
Sbjct: 348 FGRFGDEPALTASDDQLLAWAADDL--VTVFGVAVDPVDVRVRRWIEAMPQYGPGHADVV 405
Query: 366 DAAKSSLRDNGYQGLFLGGNYVAGVALGRCVESAYEVASEVSNFL 410
+ LR L + G+Y+ G+ + CV +A + V L
Sbjct: 406 ----AELRAGLPPTLAVAGSYLDGIGVPACVGAAGRAVTSVIEAL 446
>sp|P40012|PPOX_YEAST Protoporphyrinogen oxidase OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=HEM14 PE=1 SV=1
Length = 539
Score = 45.4 bits (106), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 51/114 (44%), Gaps = 3/114 (2%)
Query: 30 RLRPVPSSPTDLPIFDLMSIGGKIRAGLGALGLR--PPPPGHEESVEEFVRRNLGDE-VF 86
+L VP+S + F L +G + G+ R P PG +ESVE R G+ +
Sbjct: 117 KLVQVPNSISTTVKFLLNPLGKGLITGMMGEWFRKKSPHPGQDESVESICDRRFGNNYIS 176
Query: 87 ERLIEPFCSGVYAGDPSKLSMKAAFGKVWKLEQTGGSIIGGTFKAIQEKNKAPK 140
+I G+Y D S LS K F K++ E GS ++ K+++ K
Sbjct: 177 NNMISALLRGIYGDDVSLLSAKRTFKKIYYNELKHGSNTQAMIDNMRGKSRSKK 230
>sp|O88531|PPT1_MOUSE Palmitoyl-protein thioesterase 1 OS=Mus musculus GN=Ppt1 PE=2 SV=2
Length = 306
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Query: 31 LRPVPSSPTDLPIFDLMSIGGKIRAGLGALGLRPPPPGHEESVEEFVRRNLGDEVFERLI 90
LR V P+ L+S+GG+ + G GL P PG + +F+R++L + +L+
Sbjct: 121 LRAVAQRCPTPPMMTLISVGGQHQ---GVFGL-PRCPGESSHICDFIRKSLNAGAYSKLV 176
Query: 91 -EPFCSGVYAGDPSKLSM 107
E Y DP K S+
Sbjct: 177 QERLVQAQYWHDPIKESV 194
>sp|Q72X39|AZOR4_BACC1 FMN-dependent NADH-azoreductase 4 OS=Bacillus cereus (strain ATCC
10987) GN=azoR4 PE=3 SV=1
Length = 208
Score = 34.7 bits (78), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 50/122 (40%), Gaps = 11/122 (9%)
Query: 252 PKEAIRTECLIDGELKGFGQLHPRSQGVETLGTIYSSSLFPNRAPAGRVLLLNYIGGATN 311
P E + L + L + + HP VE L+ P V ++N A
Sbjct: 13 PAEQAVSVKLYEAFLANYKEAHPNDTVVEL-------DLYKEELPYVGVDMINGTFKAGK 65
Query: 312 LGILSKKESELVEAVDRDLRKMLINPNAKDPLVLGVRVWQQAIPQFLVGHLDLLDAAKSS 371
L+++E++ V D+ L + L D +V G +W IP L ++D L+ A +
Sbjct: 66 GFDLTEEEAKAVAVADKYLNQFL----EADKVVFGFPLWNLTIPAVLHTYIDYLNRAGKT 121
Query: 372 LR 373
+
Sbjct: 122 FK 123
>sp|Q630J1|AZOR4_BACCZ FMN-dependent NADH-azoreductase 4 OS=Bacillus cereus (strain ZK /
E33L) GN=azoR4 PE=3 SV=1
Length = 208
Score = 34.7 bits (78), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 50/122 (40%), Gaps = 11/122 (9%)
Query: 252 PKEAIRTECLIDGELKGFGQLHPRSQGVETLGTIYSSSLFPNRAPAGRVLLLNYIGGATN 311
P E + L + L + + HP VE L+ P V ++N A
Sbjct: 13 PAEQAVSVKLYEAFLASYKEAHPNDTVVEL-------DLYKEELPYVGVDMINGTFKAGK 65
Query: 312 LGILSKKESELVEAVDRDLRKMLINPNAKDPLVLGVRVWQQAIPQFLVGHLDLLDAAKSS 371
L+++E++ V D+ L + L D +V G +W IP L ++D L+ A +
Sbjct: 66 GFDLTEEEAKAVAVADKYLNQFL----EADKVVFGFPLWNLTIPAVLHTYIDYLNRAGKT 121
Query: 372 LR 373
+
Sbjct: 122 FK 123
>sp|Q81JP2|AZOR4_BACAN FMN-dependent NADH-azoreductase 4 OS=Bacillus anthracis GN=azoR4
PE=3 SV=1
Length = 208
Score = 34.7 bits (78), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 50/122 (40%), Gaps = 11/122 (9%)
Query: 252 PKEAIRTECLIDGELKGFGQLHPRSQGVETLGTIYSSSLFPNRAPAGRVLLLNYIGGATN 311
P E + L + L + + HP VE L+ P V ++N A
Sbjct: 13 PAEQAVSVKLYEAFLASYKEAHPNDTVVEL-------DLYKEELPYVGVDMINGTFKAGK 65
Query: 312 LGILSKKESELVEAVDRDLRKMLINPNAKDPLVLGVRVWQQAIPQFLVGHLDLLDAAKSS 371
L+++E++ V D+ L + L D +V G +W IP L ++D L+ A +
Sbjct: 66 GFDLTEEEAKAVAVADKYLNQFL----EADKVVFGFPLWNLTIPAVLHTYIDYLNRAGKT 121
Query: 372 LR 373
+
Sbjct: 122 FK 123
>sp|Q6HAM6|AZOR3_BACHK FMN-dependent NADH-azoreductase 3 OS=Bacillus thuringiensis subsp.
konkukian (strain 97-27) GN=azoR3 PE=3 SV=1
Length = 208
Score = 34.7 bits (78), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 50/122 (40%), Gaps = 11/122 (9%)
Query: 252 PKEAIRTECLIDGELKGFGQLHPRSQGVETLGTIYSSSLFPNRAPAGRVLLLNYIGGATN 311
P E + L + L + + HP VE L+ P V ++N A
Sbjct: 13 PAEQAVSVKLYEAFLASYKEAHPNDTVVEL-------DLYKEELPYVGVDMINGTFKAGK 65
Query: 312 LGILSKKESELVEAVDRDLRKMLINPNAKDPLVLGVRVWQQAIPQFLVGHLDLLDAAKSS 371
L+++E++ V D+ L + L D +V G +W IP L ++D L+ A +
Sbjct: 66 GFDLTEEEAKAVAVADKYLNQFL----EADKVVFGFPLWNLTIPAVLHTYIDYLNRAGKT 121
Query: 372 LR 373
+
Sbjct: 122 FK 123
>sp|Q8HXW6|PPT1_MACFA Palmitoyl-protein thioesterase 1 OS=Macaca fascicularis GN=PPT1
PE=2 SV=1
Length = 306
Score = 33.9 bits (76), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
Query: 31 LRPVPSSPTDLPIFDLMSIGGKIRAGLGALGLRPPPPGHEESVEEFVRRNLGDEVFERLI 90
LR V P+ +L+S+GG+ + G GL P PG + +F+R+ L + +++
Sbjct: 121 LRAVAQRCPSPPMINLISVGGQHQ---GVFGL-PRCPGESSHICDFIRKTLNAGAYSKVV 176
Query: 91 -EPFCSGVYAGDPSK 104
E Y DP K
Sbjct: 177 QERLVQAEYWHDPIK 191
>sp|P50897|PPT1_HUMAN Palmitoyl-protein thioesterase 1 OS=Homo sapiens GN=PPT1 PE=1 SV=1
Length = 306
Score = 33.9 bits (76), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
Query: 31 LRPVPSSPTDLPIFDLMSIGGKIRAGLGALGLRPPPPGHEESVEEFVRRNLGDEVFERLI 90
LR V P+ +L+S+GG+ + G GL P PG + +F+R+ L + +++
Sbjct: 121 LRAVAQRCPSPPMINLISVGGQHQ---GVFGL-PRCPGESSHICDFIRKTLNAGAYSKVV 176
Query: 91 -EPFCSGVYAGDPSK 104
E Y DP K
Sbjct: 177 QERLVQAEYWHDPIK 191
>sp|Q54B29|Y3934_DICDI Uncharacterized membrane protein DDB_G0293934 OS=Dictyostelium
discoideum GN=DDB_G0293934 PE=4 SV=1
Length = 1713
Score = 32.3 bits (72), Expect = 6.1, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 27/47 (57%)
Query: 299 RVLLLNYIGGATNLGILSKKESELVEAVDRDLRKMLINPNAKDPLVL 345
RVLLL IG +G KKE + + +DRDL ++ I + + ++L
Sbjct: 1331 RVLLLENIGATQQIGRSLKKEKDHIVKIDRDLDRVKIEGSREKHVIL 1377
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.137 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 164,890,487
Number of Sequences: 539616
Number of extensions: 7552758
Number of successful extensions: 18437
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 18376
Number of HSP's gapped (non-prelim): 38
length of query: 416
length of database: 191,569,459
effective HSP length: 120
effective length of query: 296
effective length of database: 126,815,539
effective search space: 37537399544
effective search space used: 37537399544
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)