Query 014922
Match_columns 416
No_of_seqs 219 out of 1949
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 01:23:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014922.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014922hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1276 Protoporphyrinogen oxi 100.0 3.6E-52 7.7E-57 374.5 34.5 397 1-407 80-490 (491)
2 PLN02576 protoporphyrinogen ox 100.0 8.6E-50 1.9E-54 395.6 44.7 414 2-416 77-493 (496)
3 COG1232 HemY Protoporphyrinoge 100.0 1E-49 2.2E-54 375.2 34.5 375 1-407 65-443 (444)
4 TIGR00562 proto_IX_ox protopor 100.0 2.1E-47 4.5E-52 375.8 41.6 391 1-411 69-461 (462)
5 PRK12416 protoporphyrinogen ox 100.0 3.6E-45 7.8E-50 359.3 41.3 382 1-411 70-462 (463)
6 PRK11883 protoporphyrinogen ox 100.0 1.4E-39 3.1E-44 319.5 42.1 377 1-408 65-450 (451)
7 PRK07233 hypothetical protein; 100.0 5.3E-33 1.1E-37 271.7 32.9 360 1-411 62-432 (434)
8 PRK07208 hypothetical protein; 100.0 8.7E-33 1.9E-37 272.9 34.1 385 1-409 67-460 (479)
9 TIGR03467 HpnE squalene-associ 100.0 9.1E-32 2E-36 261.8 27.6 348 1-408 52-419 (419)
10 PLN02487 zeta-carotene desatur 100.0 2.1E-29 4.6E-34 247.8 30.4 372 1-410 139-553 (569)
11 PLN02612 phytoene desaturase 100.0 5.2E-29 1.1E-33 248.1 28.5 359 1-412 157-550 (567)
12 TIGR02732 zeta_caro_desat caro 100.0 2.2E-29 4.7E-34 246.3 24.3 368 1-407 63-474 (474)
13 PLN02268 probable polyamine ox 100.0 7.7E-29 1.7E-33 241.9 22.1 281 67-410 130-434 (435)
14 TIGR02731 phytoene_desat phyto 100.0 1.5E-27 3.3E-32 233.8 31.2 354 1-406 63-452 (453)
15 PLN03000 amine oxidase 100.0 2.1E-27 4.5E-32 238.8 29.4 236 155-413 373-626 (881)
16 PLN02328 lysine-specific histo 100.0 6.2E-27 1.4E-31 235.7 28.3 238 154-413 428-682 (808)
17 PLN02568 polyamine oxidase 100.0 8.2E-27 1.8E-31 229.7 25.8 321 69-411 159-536 (539)
18 PLN02529 lysine-specific histo 100.0 2.8E-26 6.1E-31 230.1 28.0 237 154-412 348-600 (738)
19 PLN02976 amine oxidase 99.9 1.5E-25 3.1E-30 231.2 25.6 239 154-413 927-1189(1713)
20 PLN02676 polyamine oxidase 99.9 2.3E-25 5E-30 218.0 24.3 235 159-413 220-476 (487)
21 COG1231 Monoamine oxidase [Ami 99.9 3.4E-25 7.4E-30 204.2 20.6 237 154-412 200-449 (450)
22 PF01593 Amino_oxidase: Flavin 99.9 1.7E-24 3.6E-29 211.7 17.6 300 69-407 141-450 (450)
23 TIGR02733 desat_CrtD C-3',4' d 99.8 7.5E-19 1.6E-23 174.1 19.7 297 69-409 168-491 (492)
24 KOG0685 Flavin-containing amin 99.8 6E-19 1.3E-23 163.0 17.1 239 156-413 216-494 (498)
25 COG3380 Predicted NAD/FAD-depe 99.8 2.8E-20 6.1E-25 159.1 7.2 227 156-410 101-331 (331)
26 TIGR02734 crtI_fam phytoene de 99.8 1.7E-17 3.6E-22 165.0 24.0 296 68-412 159-494 (502)
27 KOG0029 Amine oxidase [Seconda 99.7 6.3E-17 1.4E-21 157.1 18.5 234 156-411 212-460 (501)
28 COG2907 Predicted NAD/FAD-bind 99.7 2.4E-16 5.2E-21 139.7 20.0 155 68-250 148-303 (447)
29 TIGR02730 carot_isom carotene 99.7 3.1E-16 6.7E-21 155.3 21.9 295 70-410 169-492 (493)
30 COG1233 Phytoene dehydrogenase 99.4 3.8E-12 8.3E-17 125.3 14.9 289 69-409 165-482 (487)
31 KOG4254 Phytoene desaturase [C 99.3 2.8E-10 6E-15 105.0 20.0 243 154-410 255-546 (561)
32 PTZ00363 rab-GDP dissociation 99.3 3.9E-09 8.4E-14 101.9 29.1 182 2-217 87-287 (443)
33 TIGR00031 UDP-GALP_mutase UDP- 99.3 4.9E-11 1.1E-15 112.3 15.4 287 23-407 82-376 (377)
34 COG3349 Uncharacterized conser 99.0 2.8E-09 6.1E-14 101.4 12.3 369 1-412 64-465 (485)
35 PF07156 Prenylcys_lyase: Pren 98.9 2E-07 4.3E-12 87.6 18.8 118 69-222 68-189 (368)
36 PF00996 GDI: GDP dissociation 98.3 5.6E-06 1.2E-10 79.3 12.0 182 2-215 88-284 (438)
37 KOG1439 RAB proteins geranylge 98.0 3.2E-05 6.9E-10 71.2 9.5 185 2-216 88-285 (440)
38 PRK13977 myosin-cross-reactive 97.8 0.00045 9.7E-09 68.3 14.2 144 46-218 138-291 (576)
39 COG0562 Glf UDP-galactopyranos 97.1 0.017 3.8E-07 52.2 13.7 154 26-222 87-243 (374)
40 COG0644 FixC Dehydrogenases (f 97.1 0.054 1.2E-06 52.3 17.9 63 159-224 94-157 (396)
41 COG5044 MRS6 RAB proteins gera 97.0 0.003 6.4E-08 58.0 8.3 177 2-215 89-279 (434)
42 TIGR02352 thiamin_ThiO glycine 96.7 0.1 2.2E-06 49.0 16.2 62 155-221 126-194 (337)
43 TIGR03197 MnmC_Cterm tRNA U-34 96.5 0.077 1.7E-06 50.9 14.5 62 155-220 124-190 (381)
44 COG2081 Predicted flavoprotein 96.3 0.013 2.8E-07 54.7 6.9 61 153-217 101-164 (408)
45 PRK08132 FAD-dependent oxidore 96.1 1.8 3.9E-05 43.8 21.9 52 174-226 140-192 (547)
46 PRK00711 D-amino acid dehydrog 96.0 0.32 7E-06 47.2 16.0 52 164-220 202-257 (416)
47 COG0654 UbiH 2-polyprenyl-6-me 96.0 1.3 2.9E-05 42.5 19.7 62 162-226 103-169 (387)
48 PRK07494 2-octaprenyl-6-methox 95.8 0.55 1.2E-05 45.1 16.5 58 164-225 112-173 (388)
49 PRK07364 2-octaprenyl-6-methox 95.8 0.48 1E-05 46.0 16.2 61 164-225 122-187 (415)
50 PRK08773 2-octaprenyl-3-methyl 95.7 0.69 1.5E-05 44.6 16.7 57 164-224 114-174 (392)
51 PF01266 DAO: FAD dependent ox 95.6 0.028 6.1E-07 53.1 6.6 62 154-220 135-203 (358)
52 PF13738 Pyr_redox_3: Pyridine 95.5 0.036 7.9E-07 47.8 6.2 53 162-218 84-136 (203)
53 TIGR01984 UbiH 2-polyprenyl-6- 95.4 0.8 1.7E-05 43.9 15.9 58 164-225 106-168 (382)
54 TIGR01988 Ubi-OHases Ubiquinon 95.4 1.2 2.7E-05 42.5 17.1 51 164-218 107-161 (385)
55 TIGR02032 GG-red-SF geranylger 95.2 2.4 5.2E-05 38.6 21.0 46 171-219 102-147 (295)
56 TIGR01373 soxB sarcosine oxida 95.1 3.1 6.7E-05 40.3 19.0 77 319-408 308-384 (407)
57 PRK09126 hypothetical protein; 95.1 1.5 3.3E-05 42.1 16.7 49 173-225 124-173 (392)
58 PF03486 HI0933_like: HI0933-l 94.8 0.08 1.7E-06 51.1 7.0 62 153-217 99-163 (409)
59 PRK05732 2-octaprenyl-6-methox 94.8 1.8 3.9E-05 41.6 16.6 47 174-224 127-174 (395)
60 PRK07333 2-octaprenyl-6-methox 94.8 3.2 6.9E-05 40.0 18.1 58 164-225 112-173 (403)
61 COG0579 Predicted dehydrogenas 94.6 0.13 2.8E-06 49.6 7.6 57 162-220 152-211 (429)
62 TIGR03862 flavo_PP4765 unchara 94.3 0.13 2.9E-06 48.8 6.9 62 153-219 76-140 (376)
63 PF05834 Lycopene_cycl: Lycope 94.1 5.6 0.00012 38.1 18.9 51 165-219 89-141 (374)
64 PRK06185 hypothetical protein; 94.1 5.9 0.00013 38.3 21.5 52 174-225 123-175 (407)
65 PRK08020 ubiF 2-octaprenyl-3-m 94.1 4.5 9.7E-05 38.9 17.4 48 174-225 127-175 (391)
66 PRK08850 2-octaprenyl-6-methox 93.9 1.3 2.8E-05 42.9 13.2 48 174-225 126-174 (405)
67 PRK10015 oxidoreductase; Provi 93.7 7.4 0.00016 38.0 20.5 54 161-218 109-162 (429)
68 PF06100 Strep_67kDa_ant: Stre 92.5 1.6 3.4E-05 42.6 10.9 127 62-218 135-272 (500)
69 COG0665 DadA Glycine/D-amino a 92.4 4.6 0.0001 38.6 14.6 54 163-221 156-213 (387)
70 PF06039 Mqo: Malate:quinone o 92.3 0.73 1.6E-05 44.5 8.4 62 162-223 180-247 (488)
71 PRK07608 ubiquinone biosynthes 92.1 11 0.00025 35.9 17.1 56 165-225 113-173 (388)
72 PRK11728 hydroxyglutarate oxid 91.7 0.44 9.5E-06 46.0 6.5 53 163-220 149-204 (393)
73 KOG4405 GDP dissociation inhib 91.6 0.7 1.5E-05 43.5 7.1 159 23-215 166-340 (547)
74 PRK05329 anaerobic glycerol-3- 91.5 0.67 1.4E-05 45.0 7.4 56 161-218 258-316 (422)
75 PF13454 NAD_binding_9: FAD-NA 91.4 0.71 1.5E-05 38.0 6.5 36 178-217 119-154 (156)
76 PTZ00383 malate:quinone oxidor 91.0 0.72 1.6E-05 45.8 7.2 55 163-221 211-274 (497)
77 TIGR02023 BchP-ChlP geranylger 90.5 17 0.00037 34.9 18.0 34 378-411 264-303 (388)
78 PLN02172 flavin-containing mon 90.5 0.86 1.9E-05 44.9 7.2 54 165-219 113-172 (461)
79 COG2509 Uncharacterized FAD-de 90.4 0.73 1.6E-05 44.1 6.3 52 164-218 174-228 (486)
80 TIGR01320 mal_quin_oxido malat 90.1 1.3 2.7E-05 44.1 8.1 66 155-220 167-240 (483)
81 TIGR03329 Phn_aa_oxid putative 90.1 0.82 1.8E-05 45.1 6.8 76 321-408 318-393 (460)
82 PF00743 FMO-like: Flavin-bind 89.9 0.76 1.6E-05 46.1 6.4 57 162-219 86-149 (531)
83 TIGR02485 CobZ_N-term precorri 89.7 1.2 2.6E-05 43.6 7.5 59 158-218 118-181 (432)
84 PRK05257 malate:quinone oxidor 89.6 1.6 3.6E-05 43.4 8.4 66 155-220 172-246 (494)
85 PRK08244 hypothetical protein; 89.4 1.3 2.9E-05 44.1 7.8 65 160-225 100-165 (493)
86 PRK13339 malate:quinone oxidor 89.4 1.4 2.9E-05 43.8 7.6 57 163-220 184-247 (497)
87 TIGR03378 glycerol3P_GlpB glyc 88.8 1.5 3.2E-05 42.3 7.2 59 164-224 264-326 (419)
88 PRK12845 3-ketosteroid-delta-1 88.6 1.3 2.8E-05 45.0 7.0 61 157-218 212-276 (564)
89 PRK06134 putative FAD-binding 88.6 1.3 2.8E-05 45.1 7.1 56 164-219 218-277 (581)
90 TIGR01377 soxA_mon sarcosine o 88.5 1.3 2.7E-05 42.4 6.7 51 164-219 146-199 (380)
91 PRK08274 tricarballylate dehyd 88.4 1.7 3.7E-05 43.0 7.7 61 158-218 126-190 (466)
92 PF00890 FAD_binding_2: FAD bi 88.4 1.3 2.8E-05 43.1 6.8 59 161-219 139-202 (417)
93 PRK12409 D-amino acid dehydrog 88.4 1.4 3.1E-05 42.6 7.0 56 164-220 198-258 (410)
94 PRK07236 hypothetical protein; 88.3 1.4 3E-05 42.4 6.8 54 161-218 98-152 (386)
95 TIGR03219 salicylate_mono sali 88.1 1.2 2.5E-05 43.3 6.3 57 164-224 106-164 (414)
96 TIGR00275 flavoprotein, HI0933 88.0 1.8 4E-05 41.8 7.5 56 159-219 101-159 (400)
97 PRK11259 solA N-methyltryptoph 87.9 1.3 2.8E-05 42.3 6.3 42 173-219 162-203 (376)
98 PRK06183 mhpA 3-(3-hydroxyphen 87.8 1.3 2.7E-05 44.8 6.4 51 174-225 128-180 (538)
99 PRK01747 mnmC bifunctional tRN 86.9 1.5 3.3E-05 45.5 6.6 62 155-220 397-463 (662)
100 PRK06184 hypothetical protein; 86.7 1.9 4.1E-05 43.1 7.0 51 174-225 123-174 (502)
101 PLN00093 geranylgeranyl diphos 86.6 35 0.00075 33.6 19.7 34 378-411 309-348 (450)
102 PRK06175 L-aspartate oxidase; 86.3 1.8 4E-05 42.3 6.4 55 164-218 129-187 (433)
103 PRK06475 salicylate hydroxylas 86.2 1.9 4.2E-05 41.6 6.5 61 164-225 108-173 (400)
104 PRK09897 hypothetical protein; 85.7 2.4 5.2E-05 42.5 7.0 41 175-218 124-164 (534)
105 PRK07588 hypothetical protein; 85.6 2.1 4.6E-05 41.1 6.5 56 165-224 105-163 (391)
106 PRK06847 hypothetical protein; 85.2 2.5 5.4E-05 40.3 6.7 51 165-219 109-162 (375)
107 PRK06996 hypothetical protein; 84.6 2.7 5.8E-05 40.6 6.7 59 165-224 117-180 (398)
108 PRK07121 hypothetical protein; 84.2 3.7 8E-05 40.9 7.6 57 162-218 176-237 (492)
109 PRK06753 hypothetical protein; 84.2 2.8 6E-05 40.0 6.5 58 164-225 99-158 (373)
110 PF13434 K_oxygenase: L-lysine 84.1 3.2 7E-05 39.1 6.7 42 176-217 295-338 (341)
111 PRK06370 mercuric reductase; V 83.7 3.7 8E-05 40.6 7.3 46 172-218 224-269 (463)
112 PRK06416 dihydrolipoamide dehy 83.5 3.4 7.4E-05 40.8 7.0 47 172-219 225-271 (462)
113 PRK07045 putative monooxygenas 83.3 3 6.6E-05 40.0 6.4 57 165-224 108-170 (388)
114 TIGR02053 MerA mercuric reduct 83.1 3.7 8.1E-05 40.5 7.1 46 172-218 219-264 (463)
115 PRK12842 putative succinate de 82.9 3.8 8.3E-05 41.7 7.2 56 163-218 214-273 (574)
116 PRK05868 hypothetical protein; 82.8 3.7 7.9E-05 39.3 6.7 57 165-225 107-166 (372)
117 PRK06834 hypothetical protein; 82.5 3.4 7.3E-05 41.2 6.5 50 172-225 112-162 (488)
118 PRK07190 hypothetical protein; 82.2 3.7 7.9E-05 40.9 6.6 49 172-224 121-170 (487)
119 PRK05714 2-octaprenyl-3-methyl 81.7 3.2 6.8E-05 40.2 5.9 58 164-225 113-174 (405)
120 PRK06481 fumarate reductase fl 81.5 4.6 0.0001 40.4 7.1 54 164-217 191-248 (506)
121 PRK08849 2-octaprenyl-3-methyl 81.3 3.2 7E-05 39.8 5.8 47 174-224 125-172 (384)
122 TIGR03364 HpnW_proposed FAD de 80.9 3.1 6.7E-05 39.6 5.4 39 173-220 159-197 (365)
123 PRK12835 3-ketosteroid-delta-1 80.6 5.7 0.00012 40.5 7.5 55 164-218 214-273 (584)
124 PF00070 Pyr_redox: Pyridine n 80.4 5.5 0.00012 28.3 5.4 33 165-198 45-77 (80)
125 TIGR03377 glycerol3P_GlpA glyc 80.3 5.4 0.00012 40.0 7.2 57 164-220 129-190 (516)
126 KOG2404 Fumarate reductase, fl 80.2 3.8 8.3E-05 37.6 5.3 43 176-218 161-204 (477)
127 PRK12844 3-ketosteroid-delta-1 79.6 5.3 0.00011 40.6 6.8 55 164-218 209-267 (557)
128 PRK06116 glutathione reductase 79.6 5.1 0.00011 39.4 6.6 51 165-218 210-263 (450)
129 PRK08163 salicylate hydroxylas 79.3 4.3 9.3E-05 39.0 5.9 41 175-219 125-165 (396)
130 PLN02927 antheraxanthin epoxid 79.2 4.8 0.0001 41.5 6.3 57 164-224 195-253 (668)
131 PRK07818 dihydrolipoamide dehy 79.2 6.7 0.00015 38.8 7.4 53 165-218 215-271 (466)
132 TIGR01292 TRX_reduct thioredox 79.0 5 0.00011 36.7 6.0 49 165-218 59-110 (300)
133 PRK12843 putative FAD-binding 78.9 6 0.00013 40.4 7.0 54 164-218 222-280 (578)
134 KOG2820 FAD-dependent oxidored 78.8 7.1 0.00015 36.2 6.6 56 170-227 163-218 (399)
135 PRK10157 putative oxidoreducta 78.5 7.7 0.00017 37.9 7.4 57 158-218 106-162 (428)
136 COG1249 Lpd Pyruvate/2-oxoglut 78.4 6.2 0.00013 38.7 6.6 51 165-217 216-269 (454)
137 PRK07843 3-ketosteroid-delta-1 78.3 6.4 0.00014 39.9 7.0 55 164-218 209-267 (557)
138 TIGR01813 flavo_cyto_c flavocy 78.2 7.2 0.00016 38.2 7.2 55 164-218 131-190 (439)
139 PRK06126 hypothetical protein; 77.8 5.4 0.00012 40.3 6.4 51 174-225 141-194 (545)
140 PRK06327 dihydrolipoamide dehy 77.8 7.9 0.00017 38.4 7.4 53 165-218 226-282 (475)
141 PRK12837 3-ketosteroid-delta-1 77.5 6 0.00013 39.7 6.5 54 165-218 175-233 (513)
142 PRK04965 NADH:flavorubredoxin 77.3 6.4 0.00014 37.7 6.4 43 172-218 195-237 (377)
143 PF13434 K_oxygenase: L-lysine 77.3 4.3 9.2E-05 38.3 5.0 56 162-217 97-156 (341)
144 PLN02507 glutathione reductase 76.9 6.8 0.00015 39.2 6.6 41 174-218 258-298 (499)
145 PF03275 GLF: UDP-galactopyran 76.9 0.15 3.3E-06 43.5 -4.3 96 88-223 1-96 (204)
146 PRK12266 glpD glycerol-3-phosp 76.7 8.5 0.00018 38.6 7.3 47 173-220 168-216 (508)
147 PRK07512 L-aspartate oxidase; 76.7 4.9 0.00011 40.3 5.6 56 164-219 137-196 (513)
148 PF01494 FAD_binding_3: FAD bi 76.3 8.2 0.00018 36.1 6.8 60 165-225 113-178 (356)
149 PRK05249 soluble pyridine nucl 76.1 7 0.00015 38.6 6.5 51 165-219 218-271 (461)
150 PRK11101 glpA sn-glycerol-3-ph 75.9 8.3 0.00018 39.0 7.0 56 165-220 151-211 (546)
151 PRK08013 oxidoreductase; Provi 75.6 6 0.00013 38.2 5.8 48 174-225 126-174 (400)
152 PRK08243 4-hydroxybenzoate 3-m 75.0 9.5 0.00021 36.7 7.0 52 173-226 116-170 (392)
153 TIGR00551 nadB L-aspartate oxi 75.0 7.4 0.00016 38.8 6.3 56 164-220 129-189 (488)
154 TIGR01350 lipoamide_DH dihydro 75.0 8.5 0.00018 37.9 6.7 42 174-218 225-267 (461)
155 PRK12839 hypothetical protein; 74.9 11 0.00024 38.4 7.6 55 164-218 215-274 (572)
156 PRK13369 glycerol-3-phosphate 74.6 11 0.00024 37.7 7.4 47 173-220 168-215 (502)
157 TIGR01424 gluta_reduc_2 glutat 73.9 8.7 0.00019 37.8 6.5 41 174-218 221-261 (446)
158 PRK07845 flavoprotein disulfid 73.8 8.7 0.00019 38.0 6.4 42 173-218 231-272 (466)
159 KOG1335 Dihydrolipoamide dehyd 73.3 13 0.00028 35.2 6.7 59 159-217 247-311 (506)
160 TIGR03862 flavo_PP4765 unchara 72.7 4.6 0.0001 38.5 4.0 35 376-410 335-375 (376)
161 PRK14727 putative mercuric red 72.6 9.7 0.00021 37.8 6.5 50 165-219 230-282 (479)
162 PRK07538 hypothetical protein; 72.5 11 0.00023 36.6 6.7 60 165-225 108-171 (413)
163 PRK13512 coenzyme A disulfide 72.5 8.7 0.00019 37.6 6.1 50 168-219 66-116 (438)
164 PRK08010 pyridine nucleotide-d 71.9 9.4 0.0002 37.4 6.2 49 165-218 201-252 (441)
165 PRK11445 putative oxidoreducta 71.6 15 0.00033 34.7 7.3 50 174-225 112-163 (351)
166 PF00732 GMC_oxred_N: GMC oxid 71.5 6.3 0.00014 36.1 4.6 52 174-225 207-263 (296)
167 TIGR03140 AhpF alkyl hydropero 71.5 12 0.00026 37.6 6.8 52 164-219 268-322 (515)
168 PRK09754 phenylpropionate diox 71.2 11 0.00025 36.2 6.5 43 172-219 198-240 (396)
169 PRK07251 pyridine nucleotide-d 70.6 11 0.00023 37.0 6.3 43 171-218 209-251 (438)
170 PRK04176 ribulose-1,5-biphosph 70.3 5.7 0.00012 35.8 3.9 37 376-412 212-256 (257)
171 PF12831 FAD_oxidored: FAD dep 69.2 1.5 3.3E-05 42.8 0.0 63 162-224 92-154 (428)
172 TIGR03385 CoA_CoA_reduc CoA-di 69.2 10 0.00022 37.0 5.7 48 168-218 52-101 (427)
173 PRK14694 putative mercuric red 69.1 13 0.00028 36.8 6.5 49 165-218 220-271 (468)
174 TIGR01421 gluta_reduc_1 glutat 69.1 17 0.00037 35.8 7.3 53 165-219 209-264 (450)
175 KOG2844 Dimethylglycine dehydr 69.1 9.8 0.00021 38.6 5.4 62 155-220 176-243 (856)
176 TIGR01438 TGR thioredoxin and 68.6 16 0.00034 36.4 7.0 44 174-218 234-277 (484)
177 TIGR01816 sdhA_forward succina 68.2 17 0.00037 37.0 7.2 56 164-219 120-180 (565)
178 PRK07846 mycothione reductase; 68.1 14 0.00029 36.5 6.4 42 174-219 220-261 (451)
179 PRK14989 nitrite reductase sub 67.9 17 0.00036 39.0 7.3 53 163-218 190-243 (847)
180 PRK06115 dihydrolipoamide dehy 67.5 18 0.00039 35.8 7.1 54 165-219 217-275 (466)
181 PRK06467 dihydrolipoamide dehy 67.4 16 0.00034 36.3 6.7 44 175-219 229-273 (471)
182 PRK15317 alkyl hydroperoxide r 67.1 16 0.00036 36.6 6.8 52 164-219 267-321 (517)
183 PRK08626 fumarate reductase fl 67.1 18 0.00039 37.5 7.2 56 164-219 159-219 (657)
184 PRK06912 acoL dihydrolipoamide 67.1 16 0.00035 36.0 6.7 51 165-218 213-266 (458)
185 PRK06263 sdhA succinate dehydr 67.0 15 0.00032 37.2 6.5 56 164-219 135-196 (543)
186 COG1252 Ndh NADH dehydrogenase 66.9 13 0.00029 35.7 5.7 50 162-218 211-260 (405)
187 COG2081 Predicted flavoprotein 66.4 6.5 0.00014 37.3 3.4 35 376-410 367-407 (408)
188 KOG1399 Flavin-containing mono 66.3 18 0.00038 35.5 6.6 58 162-220 92-153 (448)
189 TIGR03452 mycothione_red mycot 66.3 17 0.00038 35.7 6.7 42 174-219 223-264 (452)
190 TIGR01423 trypano_reduc trypan 66.0 17 0.00038 36.1 6.7 51 165-218 233-286 (486)
191 PRK06617 2-octaprenyl-6-methox 65.8 14 0.00031 35.2 5.9 58 163-225 104-166 (374)
192 PLN02464 glycerol-3-phosphate 65.8 23 0.0005 36.5 7.7 57 164-220 233-296 (627)
193 PRK13984 putative oxidoreducta 65.4 7.6 0.00016 39.9 4.1 36 376-411 567-602 (604)
194 TIGR00292 thiazole biosynthesi 64.9 8 0.00017 34.7 3.7 36 376-411 211-254 (254)
195 PRK09564 coenzyme A disulfide 64.9 18 0.0004 35.3 6.6 43 171-218 202-244 (444)
196 COG1635 THI4 Ribulose 1,5-bisp 64.9 7 0.00015 34.0 3.1 37 376-412 217-261 (262)
197 PRK05976 dihydrolipoamide dehy 64.8 24 0.00052 34.9 7.4 45 173-219 234-280 (472)
198 PRK12834 putative FAD-binding 64.7 20 0.00044 36.3 7.0 45 174-218 166-225 (549)
199 PRK13748 putative mercuric red 64.4 17 0.00038 36.8 6.5 49 165-218 312-363 (561)
200 PRK08071 L-aspartate oxidase; 63.8 17 0.00037 36.5 6.2 55 164-218 131-188 (510)
201 PRK07573 sdhA succinate dehydr 63.2 24 0.00051 36.6 7.2 45 174-218 184-230 (640)
202 PRK04965 NADH:flavorubredoxin 62.9 15 0.00033 35.0 5.5 45 168-219 66-110 (377)
203 PLN02463 lycopene beta cyclase 62.8 21 0.00047 35.0 6.5 50 165-219 116-168 (447)
204 TIGR02374 nitri_red_nirB nitri 62.6 21 0.00045 38.0 6.8 51 164-218 186-236 (785)
205 PRK10157 putative oxidoreducta 62.5 10 0.00022 37.0 4.3 35 378-412 295-337 (428)
206 KOG1346 Programmed cell death 62.4 8.7 0.00019 36.6 3.5 62 154-219 379-448 (659)
207 TIGR02462 pyranose_ox pyranose 62.2 20 0.00042 36.2 6.2 51 175-225 229-284 (544)
208 TIGR01810 betA choline dehydro 61.8 13 0.00028 37.5 5.0 51 174-224 208-259 (532)
209 PTZ00058 glutathione reductase 61.3 30 0.00064 35.2 7.4 52 165-218 280-334 (561)
210 TIGR01789 lycopene_cycl lycope 61.1 16 0.00036 34.8 5.3 49 163-219 89-137 (370)
211 PRK12809 putative oxidoreducta 60.6 12 0.00026 38.7 4.6 38 376-413 599-637 (639)
212 PRK12831 putative oxidoreducta 59.4 14 0.00029 36.6 4.5 37 376-412 425-462 (464)
213 TIGR01811 sdhA_Bsu succinate d 59.3 31 0.00068 35.4 7.2 45 174-218 147-194 (603)
214 PRK07395 L-aspartate oxidase; 58.1 18 0.00039 36.7 5.2 54 164-218 135-195 (553)
215 TIGR01989 COQ6 Ubiquinone bios 58.1 21 0.00047 34.9 5.7 47 175-225 135-189 (437)
216 COG3486 IucD Lysine/ornithine 58.0 36 0.00078 32.6 6.7 44 176-219 294-339 (436)
217 PRK12810 gltD glutamate syntha 57.9 16 0.00034 36.3 4.7 37 376-412 429-466 (471)
218 PTZ00052 thioredoxin reductase 57.9 31 0.00068 34.5 6.8 50 166-219 225-277 (499)
219 PRK12769 putative oxidoreducta 57.7 14 0.0003 38.4 4.5 37 376-412 616-653 (654)
220 PLN02697 lycopene epsilon cycl 57.2 37 0.00081 34.2 7.2 53 164-220 193-248 (529)
221 PRK09564 coenzyme A disulfide 56.9 26 0.00057 34.2 6.1 44 173-219 69-114 (444)
222 PRK09078 sdhA succinate dehydr 56.8 37 0.0008 34.9 7.3 56 164-219 150-211 (598)
223 PRK07804 L-aspartate oxidase; 56.6 36 0.00079 34.4 7.1 55 164-218 145-208 (541)
224 PRK05945 sdhA succinate dehydr 55.5 40 0.00087 34.4 7.3 56 164-219 136-196 (575)
225 PRK08205 sdhA succinate dehydr 55.1 44 0.00095 34.2 7.5 56 164-219 141-205 (583)
226 TIGR01316 gltA glutamate synth 55.0 16 0.00034 36.0 4.1 35 376-410 414-449 (449)
227 PF01134 GIDA: Glucose inhibit 54.9 18 0.00039 34.7 4.3 40 372-411 350-389 (392)
228 TIGR01812 sdhA_frdA_Gneg succi 54.9 35 0.00076 34.7 6.8 55 165-219 131-190 (566)
229 PRK05675 sdhA succinate dehydr 54.5 46 0.00099 33.9 7.5 58 163-220 126-189 (570)
230 PRK12771 putative glutamate sy 54.4 19 0.00041 36.7 4.7 38 376-413 408-446 (564)
231 PRK06452 sdhA succinate dehydr 54.1 33 0.00073 34.9 6.4 57 164-220 137-198 (566)
232 TIGR02374 nitri_red_nirB nitri 53.4 25 0.00054 37.4 5.5 43 171-219 65-107 (785)
233 TIGR01317 GOGAT_sm_gam glutama 53.3 23 0.00049 35.3 5.0 38 376-413 443-481 (485)
234 PRK06292 dihydrolipoamide dehy 53.2 41 0.00088 33.1 6.8 43 175-218 224-266 (460)
235 PLN02661 Putative thiazole syn 53.1 16 0.00035 34.4 3.7 37 376-412 285-329 (357)
236 PTZ00139 Succinate dehydrogena 52.9 45 0.00097 34.4 7.2 55 164-218 167-227 (617)
237 TIGR01790 carotene-cycl lycope 52.2 37 0.00079 32.5 6.2 52 165-220 87-141 (388)
238 PRK04176 ribulose-1,5-biphosph 51.9 52 0.0011 29.5 6.7 55 164-218 105-171 (257)
239 TIGR03169 Nterm_to_SelD pyridi 51.7 34 0.00074 32.4 5.8 49 163-219 194-242 (364)
240 PRK05335 tRNA (uracil-5-)-meth 51.6 23 0.00049 34.5 4.4 35 376-410 329-363 (436)
241 PRK02106 choline dehydrogenase 51.6 21 0.00045 36.3 4.5 50 175-224 216-266 (560)
242 PF01134 GIDA: Glucose inhibit 51.6 38 0.00082 32.5 5.9 55 160-218 95-150 (392)
243 TIGR03385 CoA_CoA_reduc CoA-di 51.5 38 0.00083 32.9 6.2 43 171-219 190-232 (427)
244 TIGR01318 gltD_gamma_fam gluta 50.9 24 0.00053 34.9 4.8 36 376-411 430-466 (467)
245 PRK09754 phenylpropionate diox 50.8 32 0.0007 33.1 5.5 41 173-219 71-111 (396)
246 PRK08275 putative oxidoreducta 50.7 60 0.0013 32.9 7.7 56 164-219 138-199 (554)
247 PRK06854 adenylylsulfate reduc 50.2 49 0.0011 34.0 7.0 55 165-219 134-194 (608)
248 PLN02815 L-aspartate oxidase 50.1 40 0.00087 34.5 6.3 56 164-219 156-221 (594)
249 TIGR03169 Nterm_to_SelD pyridi 50.1 25 0.00054 33.3 4.6 43 170-219 64-106 (364)
250 PF07992 Pyr_redox_2: Pyridine 50.1 29 0.00062 29.4 4.6 44 174-218 72-120 (201)
251 TIGR02028 ChlP geranylgeranyl 50.0 26 0.00055 33.9 4.7 34 378-411 270-309 (398)
252 PTZ00318 NADH dehydrogenase-li 49.3 43 0.00094 32.6 6.2 40 171-218 239-278 (424)
253 TIGR01292 TRX_reduct thioredox 49.2 18 0.00038 33.0 3.3 35 376-410 264-300 (300)
254 TIGR02360 pbenz_hydroxyl 4-hyd 49.0 54 0.0012 31.5 6.7 61 164-226 104-170 (390)
255 PRK12770 putative glutamate sy 48.8 29 0.00062 32.8 4.8 36 376-411 314-350 (352)
256 PRK10262 thioredoxin reductase 48.7 50 0.0011 30.6 6.3 54 165-218 187-246 (321)
257 PRK11749 dihydropyrimidine deh 48.7 24 0.00052 34.8 4.3 37 376-412 416-453 (457)
258 TIGR00137 gid_trmFO tRNA:m(5)U 48.5 28 0.00061 33.9 4.6 40 371-410 323-362 (433)
259 COG2072 TrkA Predicted flavopr 47.7 31 0.00068 33.8 4.9 41 176-218 100-142 (443)
260 PRK06069 sdhA succinate dehydr 47.5 46 0.001 34.0 6.3 55 165-219 139-199 (577)
261 PRK12778 putative bifunctional 46.0 28 0.0006 36.9 4.5 37 376-412 714-751 (752)
262 PF04820 Trp_halogenase: Trypt 45.7 77 0.0017 31.2 7.3 57 159-219 153-210 (454)
263 PRK12779 putative bifunctional 45.7 29 0.00062 37.7 4.6 36 376-411 591-627 (944)
264 PRK07803 sdhA succinate dehydr 45.6 62 0.0013 33.5 6.9 44 175-218 166-211 (626)
265 PTZ00306 NADH-dependent fumara 45.6 56 0.0012 36.6 7.0 38 376-413 859-905 (1167)
266 PLN00128 Succinate dehydrogena 45.5 70 0.0015 33.1 7.2 56 164-219 188-249 (635)
267 PRK08958 sdhA succinate dehydr 45.3 71 0.0015 32.7 7.2 56 164-219 144-205 (588)
268 PRK12775 putative trifunctiona 44.7 36 0.00077 37.4 5.2 38 376-413 719-757 (1006)
269 COG4716 Myosin-crossreactive a 44.1 1.2E+02 0.0027 28.8 7.7 34 157-190 221-257 (587)
270 PRK12814 putative NADPH-depend 43.8 34 0.00073 35.6 4.7 37 376-412 465-502 (652)
271 PLN02546 glutathione reductase 42.7 70 0.0015 32.5 6.6 44 173-219 306-349 (558)
272 PRK07057 sdhA succinate dehydr 42.6 90 0.002 32.0 7.5 56 164-219 149-210 (591)
273 PRK09231 fumarate reductase fl 41.2 71 0.0015 32.7 6.5 55 164-218 134-194 (582)
274 TIGR00136 gidA glucose-inhibit 41.0 33 0.00072 35.0 4.0 40 371-410 351-390 (617)
275 COG0492 TrxB Thioredoxin reduc 40.5 74 0.0016 29.5 5.9 38 376-413 264-303 (305)
276 PRK08274 tricarballylate dehyd 40.0 34 0.00073 33.8 3.9 36 376-411 417-462 (466)
277 PRK10262 thioredoxin reductase 39.9 73 0.0016 29.5 5.9 38 376-413 278-317 (321)
278 PRK12842 putative succinate de 39.6 34 0.00073 34.9 3.9 37 376-412 523-569 (574)
279 TIGR00292 thiazole biosynthesi 38.6 1.2E+02 0.0026 27.2 6.8 55 164-218 101-168 (254)
280 PRK14989 nitrite reductase sub 38.5 58 0.0013 35.0 5.5 42 172-219 71-112 (847)
281 KOG1336 Monodehydroascorbate/f 38.4 61 0.0013 31.7 5.0 57 166-225 261-318 (478)
282 PRK12844 3-ketosteroid-delta-1 38.3 33 0.00071 34.9 3.5 35 376-410 506-550 (557)
283 TIGR03140 AhpF alkyl hydropero 37.9 66 0.0014 32.3 5.6 44 174-218 402-448 (515)
284 COG1251 NirB NAD(P)H-nitrite r 37.5 50 0.0011 34.2 4.5 45 168-218 67-111 (793)
285 TIGR01372 soxA sarcosine oxida 36.7 45 0.00097 36.6 4.4 36 377-412 438-473 (985)
286 PRK09077 L-aspartate oxidase; 36.0 83 0.0018 31.8 6.0 56 164-219 139-206 (536)
287 TIGR01176 fum_red_Fp fumarate 35.7 1E+02 0.0022 31.5 6.6 55 164-218 133-193 (580)
288 PRK13512 coenzyme A disulfide 35.6 1E+02 0.0022 30.1 6.5 37 174-218 203-239 (438)
289 PRK12835 3-ketosteroid-delta-1 35.5 47 0.001 34.0 4.2 35 376-410 526-570 (584)
290 PRK06481 fumarate reductase fl 35.2 40 0.00086 33.8 3.5 35 376-410 460-503 (506)
291 PF03486 HI0933_like: HI0933-l 35.1 33 0.00071 33.3 2.8 29 376-404 374-408 (409)
292 PLN02661 Putative thiazole syn 34.9 1.1E+02 0.0024 29.0 6.1 54 164-217 173-241 (357)
293 PRK07121 hypothetical protein; 33.5 46 0.00099 33.2 3.7 34 376-409 448-490 (492)
294 COG2303 BetA Choline dehydroge 33.4 63 0.0014 32.7 4.6 50 175-224 218-270 (542)
295 COG1249 Lpd Pyruvate/2-oxoglut 32.9 58 0.0012 32.1 4.1 33 376-408 301-334 (454)
296 PRK08401 L-aspartate oxidase; 32.7 1.2E+02 0.0026 30.0 6.4 51 164-219 121-174 (466)
297 PRK06134 putative FAD-binding 32.6 40 0.00087 34.4 3.1 36 376-411 527-572 (581)
298 PRK12834 putative FAD-binding 32.5 43 0.00093 34.0 3.3 33 376-408 503-548 (549)
299 TIGR00275 flavoprotein, HI0933 31.9 33 0.00072 33.1 2.3 28 376-403 366-399 (400)
300 PRK08294 phenol 2-monooxygenas 31.8 1.6E+02 0.0035 30.5 7.3 50 176-225 159-216 (634)
301 PRK09853 putative selenate red 31.7 59 0.0013 35.5 4.2 36 376-411 806-842 (1019)
302 TIGR02485 CobZ_N-term precorri 31.1 56 0.0012 31.9 3.8 34 376-409 386-429 (432)
303 PTZ00306 NADH-dependent fumara 31.0 49 0.0011 37.0 3.7 45 174-218 561-618 (1167)
304 PRK07843 3-ketosteroid-delta-1 31.0 48 0.001 33.7 3.4 33 376-408 513-555 (557)
305 PRK15317 alkyl hydroperoxide r 30.8 1.2E+02 0.0026 30.5 6.2 45 174-219 401-448 (517)
306 PRK06116 glutathione reductase 30.7 64 0.0014 31.7 4.1 33 376-408 294-327 (450)
307 PTZ00153 lipoamide dehydrogena 30.6 1.2E+02 0.0027 31.5 6.2 47 173-219 367-426 (659)
308 COG0446 HcaD Uncharacterized N 29.9 1.2E+02 0.0027 28.8 6.0 53 163-219 178-236 (415)
309 COG0445 GidA Flavin-dependent 29.0 1.1E+02 0.0024 30.8 5.1 42 180-224 120-162 (621)
310 COG0578 GlpA Glycerol-3-phosph 28.9 1.5E+02 0.0033 29.7 6.3 46 174-220 178-225 (532)
311 PRK11749 dihydropyrimidine deh 28.7 1.4E+02 0.0031 29.3 6.2 47 172-218 323-385 (457)
312 PRK12839 hypothetical protein; 28.7 57 0.0012 33.3 3.4 35 376-410 524-568 (572)
313 TIGR01421 gluta_reduc_1 glutat 28.5 76 0.0016 31.2 4.2 33 376-408 294-327 (450)
314 PRK11445 putative oxidoreducta 28.1 73 0.0016 30.1 3.9 32 378-409 264-301 (351)
315 TIGR03315 Se_ygfK putative sel 27.9 77 0.0017 34.7 4.3 34 376-409 804-838 (1012)
316 PRK06069 sdhA succinate dehydr 27.8 58 0.0013 33.2 3.4 35 376-410 370-414 (577)
317 PRK12810 gltD glutamate syntha 27.5 1.7E+02 0.0038 28.9 6.6 45 173-218 342-398 (471)
318 TIGR01424 gluta_reduc_2 glutat 27.3 76 0.0016 31.1 4.0 37 371-408 288-325 (446)
319 PRK05329 anaerobic glycerol-3- 27.1 79 0.0017 30.8 3.9 35 376-410 379-420 (422)
320 COG0492 TrxB Thioredoxin reduc 26.9 75 0.0016 29.4 3.6 50 164-219 62-114 (305)
321 PLN02852 ferredoxin-NADP+ redu 26.8 69 0.0015 31.9 3.5 37 376-412 385-423 (491)
322 PRK12843 putative FAD-binding 26.4 76 0.0016 32.4 3.9 36 376-411 528-573 (578)
323 PRK12845 3-ketosteroid-delta-1 26.1 61 0.0013 33.0 3.1 33 376-408 521-563 (564)
324 PRK09231 fumarate reductase fl 25.9 75 0.0016 32.5 3.7 35 376-410 370-414 (582)
325 PRK08641 sdhA succinate dehydr 25.4 81 0.0018 32.3 3.9 56 165-220 135-200 (589)
326 TIGR03143 AhpF_homolog putativ 25.2 81 0.0017 32.0 3.8 37 376-412 272-310 (555)
327 PRK05192 tRNA uridine 5-carbox 25.1 1.3E+02 0.0028 31.0 5.0 42 175-220 116-157 (618)
328 COG2509 Uncharacterized FAD-de 24.8 73 0.0016 31.1 3.1 36 376-411 448-484 (486)
329 TIGR03378 glycerol3P_GlpB glyc 24.7 55 0.0012 31.8 2.4 32 376-407 381-419 (419)
330 TIGR02061 aprA adenosine phosp 24.2 2.8E+02 0.006 28.7 7.4 46 174-219 140-190 (614)
331 KOG0042 Glycerol-3-phosphate d 23.8 7.9E+02 0.017 25.0 10.4 135 174-335 238-377 (680)
332 COG3486 IucD Lysine/ornithine 23.7 3E+02 0.0065 26.7 6.8 59 157-217 95-154 (436)
333 PRK05945 sdhA succinate dehydr 23.5 1.1E+02 0.0023 31.3 4.4 35 376-410 369-413 (575)
334 TIGR03143 AhpF_homolog putativ 23.5 1.7E+02 0.0036 29.8 5.7 49 164-218 61-112 (555)
335 PRK12837 3-ketosteroid-delta-1 23.3 63 0.0014 32.5 2.6 33 376-408 468-510 (513)
336 TIGR01816 sdhA_forward succina 23.2 85 0.0019 32.0 3.5 35 376-410 352-396 (565)
337 TIGR00136 gidA glucose-inhibit 23.0 2.2E+02 0.0047 29.4 6.2 44 176-223 113-157 (617)
338 PRK05192 tRNA uridine 5-carbox 22.8 95 0.0021 31.9 3.7 36 371-406 353-388 (618)
339 TIGR01812 sdhA_frdA_Gneg succi 22.7 98 0.0021 31.5 3.9 35 376-410 358-402 (566)
340 PRK12771 putative glutamate sy 22.2 1.9E+02 0.0042 29.4 5.9 46 174-219 319-379 (564)
341 PRK06263 sdhA succinate dehydr 22.2 1.1E+02 0.0025 30.8 4.2 35 376-410 360-403 (543)
342 TIGR01423 trypano_reduc trypan 21.8 1.1E+02 0.0025 30.4 4.1 37 371-408 313-350 (486)
343 PF13670 PepSY_2: Peptidase pr 21.7 1.9E+02 0.0041 20.5 4.2 24 181-204 43-66 (83)
344 PTZ00318 NADH dehydrogenase-li 21.6 1.5E+02 0.0031 28.9 4.7 37 376-412 307-349 (424)
345 PRK06370 mercuric reductase; V 21.4 1E+02 0.0022 30.4 3.7 37 371-408 296-333 (463)
346 PRK08641 sdhA succinate dehydr 21.4 2.9E+02 0.0063 28.3 7.0 35 376-410 367-410 (589)
347 PLN02507 glutathione reductase 21.4 1.1E+02 0.0024 30.6 3.9 37 371-408 325-362 (499)
348 TIGR03329 Phn_aa_oxid putative 21.2 2E+02 0.0043 28.4 5.6 50 164-219 184-236 (460)
349 COG1251 NirB NAD(P)H-nitrite r 21.0 1.1E+02 0.0023 32.0 3.5 50 165-218 192-241 (793)
350 PRK07818 dihydrolipoamide dehy 21.0 1.1E+02 0.0025 30.1 3.9 36 372-408 299-335 (466)
351 PRK09078 sdhA succinate dehydr 21.0 1.1E+02 0.0025 31.3 4.0 35 376-410 384-428 (598)
352 PRK08958 sdhA succinate dehydr 21.0 1.1E+02 0.0024 31.4 3.8 35 376-410 379-423 (588)
353 PRK06115 dihydrolipoamide dehy 20.8 1.1E+02 0.0023 30.3 3.7 34 376-409 304-338 (466)
354 PRK06467 dihydrolipoamide dehy 20.7 1E+02 0.0023 30.5 3.5 36 372-408 300-336 (471)
355 PRK05675 sdhA succinate dehydr 20.5 1.3E+02 0.0029 30.6 4.3 35 376-410 361-405 (570)
356 TIGR01316 gltA glutamate synth 20.3 2.6E+02 0.0057 27.4 6.2 45 174-218 323-385 (449)
357 TIGR02053 MerA mercuric reduct 20.3 1.2E+02 0.0026 29.9 3.8 37 372-409 292-329 (463)
No 1
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=100.00 E-value=3.6e-52 Score=374.52 Aligned_cols=397 Identities=42% Similarity=0.633 Sum_probs=334.3
Q ss_pred ChhHHHhcCCCCceeeCCCCC----CceEEECCeeeeCCCCCCCCccccCCChhhHHHhhhcccCCCC--CCCCCCCcHH
Q 014922 1 MLKMVVDSGLKDDLVLGDPNA----PRFVLWNGRLRPVPSSPTDLPIFDLMSIGGKIRAGLGALGLRP--PPPGHEESVE 74 (416)
Q Consensus 1 ~~~l~~elGl~~~l~~~~~~~----~~~i~~~g~~~~~p~~~~~~~~~~~l~~~~~lr~~~~~~~~~~--~~~~~~~s~~ 74 (416)
+++|+.||||+++++..+.+. ++++|+.|++..+|+++.+.+++.+.++...+...+..-.|++ ..+..|+||+
T Consensus 80 ~l~lv~dLGl~~e~~~i~~~~paaknr~l~~~~~L~~vP~sl~~s~~~~l~p~~k~L~~a~l~e~fr~~~~~~~~dESV~ 159 (491)
T KOG1276|consen 80 TLDLVSDLGLEDELQPIDISHPAAKNRFLYVPGKLPTVPSSLVGSLKFSLQPFGKPLLEAFLRELFRKKVSDPSADESVE 159 (491)
T ss_pred HHHHHHHcCccceeeecCCCChhhhheeeccCcccccCCcccccccccccCcccchhHHHHHhhhccccCCCCCccccHH
Confidence 478999999999999877653 4899999999999998876555555555544544332222554 3457899999
Q ss_pred HHHHHhhCHHHHHHhhhhhhcccccCCcchhhHHHhhHHHHHHHHhcCChHHHHHHHHHhhccCCCCCCCCCCC-CCCCC
Q 014922 75 EFVRRNLGDEVFERLIEPFCSGVYAGDPSKLSMKAAFGKVWKLEQTGGSIIGGTFKAIQEKNKAPKQPRDPRLP-KPKGQ 153 (416)
Q Consensus 75 ~~l~~~~g~~~~~~~~~p~~~~~~~~~~~~lS~~~~~~~~~~~~~~~gs~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 153 (416)
+|++||||+++++++++|+++|+|++|++++|+..+|+.+++.|++|||++.|++..++.+++.++.+.+...+ ..++.
T Consensus 160 sF~~RrfG~eV~d~~isp~i~GiyAgD~~~LSmk~~F~~l~~~Eqk~Gsi~~G~i~~~~~~~~~k~~e~~~~~~~~~e~~ 239 (491)
T KOG1276|consen 160 SFARRRFGKEVADRLISPFIRGIYAGDPSELSMKSSFGKLWKVEQKHGSIILGTIRAKFARKRTKKAETALSAQAKKEKW 239 (491)
T ss_pred HHHHHhhhHHHHHHHHHHHhCccccCChHHhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhcCCCccchhhhhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999888888777665554332 34456
Q ss_pred ceeehhhhHhHHHHHHHHHhcc---ceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCChHHHHhccCCCCH
Q 014922 154 TVGSFRKGLTMLPEAISKRLGS---KVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYVASSLLRPLSV 230 (416)
Q Consensus 154 ~~~~~~gG~~~l~~~L~~~lg~---~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~~~~~~ll~~~~~ 230 (416)
.++.++||++.++++|.+.|+. .|.++-++..+.....+.|.+++.+.++++.+..++++.|+|+..+++++++..+
T Consensus 240 ~~~sl~gGle~lP~a~~~~L~~~~v~i~~~~~~~~~sk~~~~~~~~tl~~~~~~~~~~~~~~~~t~~~~k~a~ll~~~~~ 319 (491)
T KOG1276|consen 240 TMFSLKGGLETLPKALRKSLGEREVSISLGLKLSGNSKSRSGNWSLTLVDHSGTQRVVVSYDAATLPAVKLAKLLRGLQN 319 (491)
T ss_pred chhhhhhhHhHhHHHHHHHhcccchhhhcccccccccccccCCceeEeEcCCCceeeeccccccccchHHhhhhccccch
Confidence 7899999999999999999974 5799999999988765559999988888767778888889999999999999888
Q ss_pred HHHhhhcCCCCCCEEEEEEEecCCccccccccCCCCCcceEEec--CCCCCceEEEEccCCCCCCCCCCCcEEEEEEecC
Q 014922 231 DAAGALSQFYYPPVAAVSVSYPKEAIRTECLIDGELKGFGQLHP--RSQGVETLGTIYSSSLFPNRAPAGRVLLLNYIGG 308 (416)
Q Consensus 231 ~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~s~~~~~~~p~g~~~l~~~~~~ 308 (416)
.+..++.++.|.++.+|++.|..+... .++.|||+++| ..++...+|++|+|..||.+.|.+ .+++++++
T Consensus 320 sls~~L~ei~y~~V~vVn~~yp~~~~~------~pl~GFG~LvPs~~~~~~~~LG~ifdS~~Fp~~~~s~--~vtvm~gg 391 (491)
T KOG1276|consen 320 SLSNALSEIPYVPVAVVNTYYPKEKID------LPLQGFGLLVPSEPKNGFKTLGTIFDSMLFPDRSPSP--KVTVMMGG 391 (491)
T ss_pred hhhhhhhcCCCCceEEEEEeccCcccc------cccccceeeccCCCCCCCceeEEEeecccCCCCCCCc--eEEEEecc
Confidence 888999999999999999999886422 16799999999 778899999999999999887755 55666655
Q ss_pred CCC--CCCCCCCHHHHHHHHHHHHHHHhCCCCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHHhhhcCCCCEEEeecc
Q 014922 309 ATN--LGILSKKESELVEAVDRDLRKMLINPNAKDPLVLGVRVWQQAIPQFLVGHLDLLDAAKSSLRDNGYQGLFLGGNY 386 (416)
Q Consensus 309 ~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~w~~~~p~~~~g~~~~~~~~~~~l~~~~~~~l~~aG~~ 386 (416)
.+. ......+.+++++.+.++|++++++.. .|....++-|++++|+|++||.+.+..++..+.+.+..+|+++|+|
T Consensus 392 ~~~~n~~~~~~S~ee~~~~v~~alq~~Lgi~~--~P~~~~v~l~~~ciPqy~vGh~~~le~a~~~l~~~~g~~l~l~G~~ 469 (491)
T KOG1276|consen 392 GGSTNTSLAVPSPEELVNAVTSALQKMLGISN--KPVSVNVHLWKNCIPQYTVGHDDVLEAAKSMLTDSPGLGLFLGGNH 469 (491)
T ss_pred cccccCcCCCCCHHHHHHHHHHHHHHHhCCCC--CcccccceehhhcccceecchHHHHHHHHHHHHhCCCCceEeeccc
Confidence 443 335667899999999999999999864 6888888899999999999999999999888887444689999999
Q ss_pred CCCCchhHHHHHHHHHHHHHH
Q 014922 387 VAGVALGRCVESAYEVASEVS 407 (416)
Q Consensus 387 ~~g~~~~~ai~sg~~aA~~il 407 (416)
+.|.++++||.+|+.+|.+++
T Consensus 470 y~Gv~vgdcI~sg~~~A~~v~ 490 (491)
T KOG1276|consen 470 YGGVSVGDCIESGRKTAVEVI 490 (491)
T ss_pred cCCCChhHHHHhhHHHHHhhc
Confidence 999999999999999998875
No 2
>PLN02576 protoporphyrinogen oxidase
Probab=100.00 E-value=8.6e-50 Score=395.64 Aligned_cols=414 Identities=69% Similarity=1.159 Sum_probs=333.4
Q ss_pred hhHHHhcCCCCceeeCCCCCCceEEECCeeeeCCCCCCCCccccCCChhhHHHhhhcccCC-CCCCCCCCCcHHHHHHHh
Q 014922 2 LKMVVDSGLKDDLVLGDPNAPRFVLWNGRLRPVPSSPTDLPIFDLMSIGGKIRAGLGALGL-RPPPPGHEESVEEFVRRN 80 (416)
Q Consensus 2 ~~l~~elGl~~~l~~~~~~~~~~i~~~g~~~~~p~~~~~~~~~~~l~~~~~lr~~~~~~~~-~~~~~~~~~s~~~~l~~~ 80 (416)
..|+++ |+.+++++..+...++++++|+++++|.++..++..+++++.+|++.+...+.. ++....+++|++||++++
T Consensus 77 ~~l~~~-gl~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~~l~~~ 155 (496)
T PLN02576 77 TSAVDS-GLRDDLVFPDPQAPRYVVWNGKLRPLPSNPIDLPTFDLLSAPGKIRAGLGAFGWKRPPPPGREESVGEFVRRH 155 (496)
T ss_pred HHHHHc-CChhheecCCCCceEEEEECCEEEEcCCChHHhcCcCcCChhHHHHHhHHHhhccCCCCCCCCCcHHHHHHHh
Confidence 345555 999888776554457888999999999876666667788988898877654432 122236889999999999
Q ss_pred hCHHHHHHhhhhhhcccccCCcchhhHHHhhHHHHHHHHhcCChHHHHHHHHHhhccCCCC-CCCCCCCCCCCCceeehh
Q 014922 81 LGDEVFERLIEPFCSGVYAGDPSKLSMKAAFGKVWKLEQTGGSIIGGTFKAIQEKNKAPKQ-PRDPRLPKPKGQTVGSFR 159 (416)
Q Consensus 81 ~g~~~~~~~~~p~~~~~~~~~~~~lS~~~~~~~~~~~~~~~gs~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 159 (416)
+|++.++++++|++.++|+.+++++|+.++++.++.+++.+||++++++..+......++. .++..+.+..+..+++++
T Consensus 156 ~g~~~~~~~~~p~~~~~~~~~~~~lS~~~~~~~~~~~e~~~gs~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (496)
T PLN02576 156 LGDEVFERLIDPFVSGVYAGDPSSLSMKAAFPKLWNLEKRGGSIIGGAIKAIQEAKKNPKPEPRDPRLPKPKGQTVGSFR 235 (496)
T ss_pred cCHHHHHHHHHHHhCceecCCHHHHhHHHHhHHHHHHHHhcCcHHHHHHHhhhhhcccccccccccccccccCCeeEecc
Confidence 9999999999999999999999999999999999999889999888876544321110000 111222222345578999
Q ss_pred hhHhHHHHHHHHHhc-cceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCChHHHHhccCCCCHHHHhhhcC
Q 014922 160 KGLTMLPEAISKRLG-SKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYVASSLLRPLSVDAAGALSQ 238 (416)
Q Consensus 160 gG~~~l~~~L~~~lg-~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~~~~~~ll~~~~~~~~~~l~~ 238 (416)
|||++|+++|++.++ ++|++|++|++|++.+++.|.|++.+.+|.++++||+||+|+|++++..++.+..++..+.+.+
T Consensus 236 gG~~~L~~~la~~l~~~~i~l~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~P~~~l~~ll~~~~~~~~~~l~~ 315 (496)
T PLN02576 236 GGLQTLPDALAKRLGKDKVKLNWKVLSLSKNDDGGYSLTYDTPEGKVNVTAKAVVMTAPLYVVSEMLRPKSPAAADALPE 315 (496)
T ss_pred chHHHHHHHHHHhhCcCcEEcCCEEEEEEECCCCcEEEEEecCCCceeEEeCEEEECCCHHHHHHHhcccCHHHHHHhcc
Confidence 999999999999997 7899999999999987644777765545544689999999999999999988777888889999
Q ss_pred CCCCCEEEEEEEecCCccccccccCCCCCcceEEecCCCCCceEEEEccCCCCCCCCCCCcEEEEEEecCCCCCCCCCCC
Q 014922 239 FYYPPVAAVSVSYPKEAIRTECLIDGELKGFGQLHPRSQGVETLGTIYSSSLFPNRAPAGRVLLLNYIGGATNLGILSKK 318 (416)
Q Consensus 239 ~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~~p~g~~~l~~~~~~~~~~~~~~~~ 318 (416)
+.|.++.+|++.|++++|..+...+.+..+++++.+..++...++++|+++++|++.|++..++++|+++..++.+.+++
T Consensus 316 ~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~lg~~~~s~~~p~~~~~~~~~l~~~~~~~~~~~~~~~s 395 (496)
T PLN02576 316 FYYPPVAAVTTSYPKEAVKRERLIDGPLEGFGQLHPRKQGVKTLGTIYSSSLFPDRAPEGRVLLLNYIGGSRNTGIASAS 395 (496)
T ss_pred CCCCceEEEEEEEchHHcccccccCCCCCceEEEccCCCCCceEEEEeecCcCCCCCCCCCEEEEEEECCCCCcccccCC
Confidence 99999999999999988864222221346788888776667788899999999988888888888999887777788899
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHHhhhcCCCCEEEeeccCCCCchhHHHHH
Q 014922 319 ESELVEAVDRDLRKMLINPNAKDPLVLGVRVWQQAIPQFLVGHLDLLDAAKSSLRDNGYQGLFLGGNYVAGVALGRCVES 398 (416)
Q Consensus 319 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~w~~~~p~~~~g~~~~~~~~~~~l~~~~~~~l~~aG~~~~g~~~~~ai~s 398 (416)
++++++.++++|.+++|......|....+++|++++|+|.+||....+.++..+.....++|++||+|+.|.++++|+.|
T Consensus 396 ~ee~~~~~~~~L~~~~g~~~~~~p~~~~~~~w~~a~P~~~~g~~~~~~~~~~~l~~~~~~~l~~aG~~~~g~~i~~ai~s 475 (496)
T PLN02576 396 EEELVEAVDRDLRKLLLKPGAPPPKVVGVRVWPKAIPQYLLGHLDVLEAAEKMEKDLGLPGLFLGGNYRGGVALGKCVES 475 (496)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCCcEEEEeEcCcccCCCCcCHHHHHHHHHHHHHhcCCCCEEEeccccCCccHHHHHHH
Confidence 99999999999999998643236777889999999999999998888888777664112799999999999999999999
Q ss_pred HHHHHHHHHHHhhhcccC
Q 014922 399 AYEVASEVSNFLSQYAYK 416 (416)
Q Consensus 399 g~~aA~~il~~l~~~~~~ 416 (416)
|+++|++|+..+.++.|+
T Consensus 476 g~~aA~~i~~~~~~~~~~ 493 (496)
T PLN02576 476 GYEAADLVISYLESSAYK 493 (496)
T ss_pred HHHHHHHHHHHHhhcccc
Confidence 999999999999888775
No 3
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=100.00 E-value=1e-49 Score=375.21 Aligned_cols=375 Identities=30% Similarity=0.501 Sum_probs=310.2
Q ss_pred ChhHHHhcCCCCceeeCCCCCCceEEECCeeeeCCCCCCCCccccCCCh---hhHHHhhhcccCCC-CCCCCCCCcHHHH
Q 014922 1 MLKMVVDSGLKDDLVLGDPNAPRFVLWNGRLRPVPSSPTDLPIFDLMSI---GGKIRAGLGALGLR-PPPPGHEESVEEF 76 (416)
Q Consensus 1 ~~~l~~elGl~~~l~~~~~~~~~~i~~~g~~~~~p~~~~~~~~~~~l~~---~~~lr~~~~~~~~~-~~~~~~~~s~~~~ 76 (416)
+++|++||||++++++..+. .+|||++|++|++|.+. ++..+.+.. ..+.+++.+.. .+ .+.+.+|.|+++|
T Consensus 65 ~l~li~eLGled~l~~~~~~-~~~i~~~gkl~p~P~~~--i~~ip~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~sv~~f 140 (444)
T COG1232 65 ILDLIKELGLEDKLLWNSTA-RKYIYYDGKLHPIPTPT--ILGIPLLLLSSEAGLARALQEFI-RPKSWEPKQDISVGEF 140 (444)
T ss_pred HHHHHHHhCcHHhhccCCcc-cceEeeCCcEEECCccc--eeecCCccccchhHHHHHHHhhh-cccCCCCCCCcCHHHH
Confidence 47899999999999976653 46999999999999764 323333332 34455544432 22 2456899999999
Q ss_pred HHHhhCHHHHHHhhhhhhcccccCCcchhhHHHhhHHHHHHHHhcCChHHHHHHHHHhhccCCCCCCCCCCCCCCCCcee
Q 014922 77 VRRNLGDEVFERLIEPFCSGVYAGDPSKLSMKAAFGKVWKLEQTGGSIIGGTFKAIQEKNKAPKQPRDPRLPKPKGQTVG 156 (416)
Q Consensus 77 l~~~~g~~~~~~~~~p~~~~~~~~~~~~lS~~~~~~~~~~~~~~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (416)
+++|||+++++++++|++.++|+++++++|+...++.+.+.+..++|+++|+....... . ......++
T Consensus 141 ~r~~fG~ev~~~~~~pll~giy~~~~~~LS~~~~~p~~~~~e~~~~s~~~g~~~~~~~~--------~----~~~~~~~~ 208 (444)
T COG1232 141 IRRRFGEEVVERFIEPLLEGIYAGDADKLSAAAAFPILARAERKYGSLLRGAKKEGLPK--------Q----SLKKEKFG 208 (444)
T ss_pred HHHHHhHHHHHHHHHHHhhchhcCCHHHhhHHHhcchhhhhhhhhcchhhhhhhccCcc--------c----cccccccc
Confidence 99999999999999999999999999999999889999988899999888776532110 0 11234678
Q ss_pred ehhhhHhHHHHHHHHHhccceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCChHHHHhccCCCCHHHHhhh
Q 014922 157 SFRKGLTMLPEAISKRLGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYVASSLLRPLSVDAAGAL 236 (416)
Q Consensus 157 ~~~gG~~~l~~~L~~~lg~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~~~~~~ll~~~~~~~~~~l 236 (416)
+++||+++|+++|++.+..+|+++++|+.|.++.++ +++.. .+|. .++||.||+|+|++.+.+++++ ....+.+
T Consensus 209 ~~~gG~~~l~~al~~~l~~~i~~~~~V~~i~~~~~~-~~~~~--~~g~-~~~~D~VI~t~p~~~l~~ll~~--~~~~~~~ 282 (444)
T COG1232 209 YLRGGLQSLIEALAEKLEAKIRTGTEVTKIDKKGAG-KTIVD--VGGE-KITADGVISTAPLPELARLLGD--EAVSKAA 282 (444)
T ss_pred ccCccHHHHHHHHHHHhhhceeecceeeEEEEcCCc-cEEEE--cCCc-eEEcceEEEcCCHHHHHHHcCC--cchhhhh
Confidence 999999999999999998889999999999998665 56542 4664 7899999999999999999987 3456678
Q ss_pred cCCCCCCEEEEEEEecCCccccccccCCCCCcceEEecCCCCCceEEEEccCCCCCCCCCCCcEEEEEEecCCCCCCCCC
Q 014922 237 SQFYYPPVAAVSVSYPKEAIRTECLIDGELKGFGQLHPRSQGVETLGTIYSSSLFPNRAPAGRVLLLNYIGGATNLGILS 316 (416)
Q Consensus 237 ~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~~p~g~~~l~~~~~~~~~~~~~~ 316 (416)
.++.+.+++.|.++++++.... ..+++++++++++.. +.+++|+|++||...|+|++++.++++.........
T Consensus 283 ~~~~~~s~~~vv~~~~~~~~~~------~~~~~g~~iad~~~~-~~a~~~~S~~~p~~~p~g~~ll~~~~~~~g~~~~~~ 355 (444)
T COG1232 283 KELQYTSVVTVVVGLDEKDNPA------LPDGYGLLIADDDPY-ILAITFHSNKWPHEAPEGKTLLRVEFGGPGDESVST 355 (444)
T ss_pred hhccccceEEEEEEeccccccC------CCCceEEEEecCCCc-ceeEEEecccCCCCCCCCcEEEEEEeecCCCcchhc
Confidence 8899999999999999863211 345678888776554 889999999999999999999999998877766778
Q ss_pred CCHHHHHHHHHHHHHHHhCCCCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHHhhhcCCCCEEEeeccCCCCchhHHH
Q 014922 317 KKESELVEAVDRDLRKMLINPNAKDPLVLGVRVWQQAIPQFLVGHLDLLDAAKSSLRDNGYQGLFLGGNYVAGVALGRCV 396 (416)
Q Consensus 317 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~w~~~~p~~~~g~~~~~~~~~~~l~~~~~~~l~~aG~~~~g~~~~~ai 396 (416)
++|||+++.++++|.++++.. .+|.++.++||++++|+|.+||.+.+.+++..+.+ .+++|+++|.|+.+.|+++||
T Consensus 356 ~~dee~~~~~l~~L~~~~~~~--~~~~~~~v~r~~~~~PqY~vG~~~~~~~ir~~l~~-~y~gi~~~G~~~~g~g~~d~I 432 (444)
T COG1232 356 MSDEELVAAVLDDLKKLGGIN--GDPVFVEVTRWKYAMPQYEVGHLDRLEPIRAALKG-AYPGIKSVGRYGEGVGLPDCI 432 (444)
T ss_pred cCHHHHHHHHHHHHHHHcCcC--cchhheeeeeccccCCccchhHHHHHHHHHHhhcc-ccCCeEEeccCCCCCCchHHH
Confidence 899999999999999998865 35678999999999999999999999999988875 469999999999999999999
Q ss_pred HHHHHHHHHHH
Q 014922 397 ESAYEVASEVS 407 (416)
Q Consensus 397 ~sg~~aA~~il 407 (416)
.+|..||++|+
T Consensus 433 ~~g~~aa~~l~ 443 (444)
T COG1232 433 AAGKEAAEQLL 443 (444)
T ss_pred HHHHHHHHHhh
Confidence 99999999986
No 4
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=100.00 E-value=2.1e-47 Score=375.76 Aligned_cols=391 Identities=43% Similarity=0.702 Sum_probs=319.0
Q ss_pred ChhHHHhcCCCCceeeCCCCCCceEEEC-CeeeeCCCCCCCCccccCCChhhHHHhhhcccCCCCCCCCCCCcHHHHHHH
Q 014922 1 MLKMVVDSGLKDDLVLGDPNAPRFVLWN-GRLRPVPSSPTDLPIFDLMSIGGKIRAGLGALGLRPPPPGHEESVEEFVRR 79 (416)
Q Consensus 1 ~~~l~~elGl~~~l~~~~~~~~~~i~~~-g~~~~~p~~~~~~~~~~~l~~~~~lr~~~~~~~~~~~~~~~~~s~~~~l~~ 79 (416)
+++|+++|||.+.++. .+...++++.+ |+++++|.++.+++.+.++++.++++..+..+ .+.....|+|++||+++
T Consensus 69 ~~~l~~~lgl~~~~~~-~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~d~s~~e~l~~ 145 (462)
T TIGR00562 69 APDLVKDLGLEHVLVS-DATGQRYVLVNRGKLMPVPTKIAPFVKTGLFSLGGKLRAGMDFI--RPASPGKDESVEEFVRR 145 (462)
T ss_pred HHHHHHHcCCCccccc-CCCCceEEEECCCceecCCCChHHHhcCCCCCchhhHHhhhhhc--cCCCCCCCcCHHHHHHH
Confidence 4689999999887654 23345677777 99999997766666667788888888765432 22224567999999999
Q ss_pred hhCHHHHHHhhhhhhcccccCCcchhhHHHhhHHHHHHHHhcCChHHHHHHHHHhhccCCCCCCCCCCCCCCCCceeehh
Q 014922 80 NLGDEVFERLIEPFCSGVYAGDPSKLSMKAAFGKVWKLEQTGGSIIGGTFKAIQEKNKAPKQPRDPRLPKPKGQTVGSFR 159 (416)
Q Consensus 80 ~~g~~~~~~~~~p~~~~~~~~~~~~lS~~~~~~~~~~~~~~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (416)
++|++.++++++|++.++|+.+++++|+.++++.++..+..++|+++++.... ..+...+........+..+.+++
T Consensus 146 ~~g~~~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 221 (462)
T TIGR00562 146 RFGDEVVENLIEPLLSGIYAGDPSKLSLKSTFPKFYQTEQKHGSLILGMKKTR----NLPQGSGLQLTAKKQGQDFQTLA 221 (462)
T ss_pred hcCHHHHHHHHHHHhcccccCCHHHhhHHHHhHHHHHHHHhcCcHHHHHHhhc----ccCccccccccccccCCceEecc
Confidence 99999999999999999999999999999999999887778888877763210 00000000000111233367899
Q ss_pred hhHhHHHHHHHHHhc-cceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCChHHHHhccCCCCHHHHhhhcC
Q 014922 160 KGLTMLPEAISKRLG-SKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYVASSLLRPLSVDAAGALSQ 238 (416)
Q Consensus 160 gG~~~l~~~L~~~lg-~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~~~~~~ll~~~~~~~~~~l~~ 238 (416)
|||++|+++|++.++ ++|++|++|++|+.++++ |+|+. .+|+ ++.||+||+|+|++.+.+++++.++...+.+.+
T Consensus 222 gG~~~l~~~l~~~l~~~~i~~~~~V~~I~~~~~~-~~v~~--~~g~-~~~ad~VI~t~P~~~~~~ll~~~~~~~~~~l~~ 297 (462)
T TIGR00562 222 TGLETLPEEIEKRLKLTKVYKGTKVTKLSHRGSN-YTLEL--DNGV-TVETDSVVVTAPHKAAAGLLSELSNSASSHLDK 297 (462)
T ss_pred hhHHHHHHHHHHHhccCeEEcCCeEEEEEecCCc-EEEEE--CCCc-EEEcCEEEECCCHHHHHHHhcccCHHHHHHHhc
Confidence 999999999999996 689999999999998887 88863 5664 789999999999999999998877778889999
Q ss_pred CCCCCEEEEEEEecCCccccccccCCCCCcceEEecCCCCCceEEEEccCCCCCCCCCCCcEEEEEEecCCCCCCCCCCC
Q 014922 239 FYYPPVAAVSVSYPKEAIRTECLIDGELKGFGQLHPRSQGVETLGTIYSSSLFPNRAPAGRVLLLNYIGGATNLGILSKK 318 (416)
Q Consensus 239 ~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~~p~g~~~l~~~~~~~~~~~~~~~~ 318 (416)
+.|.++.+|++.|++++|.. +..++++++|..+...+++++|+|+++|...|+|..++++|+++..+..+.+++
T Consensus 298 l~~~~~~~v~l~~~~~~~~~------~~~~~g~l~~~~~~~~~~~~i~~s~~~p~~~p~g~~~l~~~~~g~~~~~~~~~~ 371 (462)
T TIGR00562 298 IHSPPVANVNLGFPEGSVDG------ELEGFGFLISRSSKFAILGCIFTSKLFPNRAPPGKTLLTAYIGGATDESIVDLS 371 (462)
T ss_pred CCCCceEEEEEEEchHHcCC------CCCceEEEccCCCCCceEEEEEEccccCCcCCCCcEEEEEEeCCCCCccccCCC
Confidence 99999999999999887753 346788888777666788999999999988888888999999887666778889
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHHhhhcCCCCEEEeeccCCCCchhHHHHH
Q 014922 319 ESELVEAVDRDLRKMLINPNAKDPLVLGVRVWQQAIPQFLVGHLDLLDAAKSSLRDNGYQGLFLGGNYVAGVALGRCVES 398 (416)
Q Consensus 319 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~w~~~~p~~~~g~~~~~~~~~~~l~~~~~~~l~~aG~~~~g~~~~~ai~s 398 (416)
++++++.++++|.++++.. .+|..+.+++|++++|+|.+|+...+..+++.+.. +.++|++||+|+.|.++++|+.|
T Consensus 372 ~ee~~~~v~~~L~~~~gi~--~~p~~~~v~rw~~a~P~~~~g~~~~~~~i~~~l~~-~~~~l~l~G~~~~g~~i~~~i~s 448 (462)
T TIGR00562 372 ENEIINIVLRDLKKVLNIN--NEPEMLCVTRWHRAIPQYHVGHDQRLKEARELLES-AYPGVFLTGNSFEGVGIPDCIDQ 448 (462)
T ss_pred HHHHHHHHHHHHHHHhCCC--CCCcEEEEeEccccCCCCCCChHHHHHHHHHHHHh-hCCCEEEeccccCCCcHHHHHHH
Confidence 9999999999999999864 35889999999999999999999888888777765 46899999999999999999999
Q ss_pred HHHHHHHHHHHhh
Q 014922 399 AYEVASEVSNFLS 411 (416)
Q Consensus 399 g~~aA~~il~~l~ 411 (416)
|+++|++|+..+-
T Consensus 449 g~~~a~~~~~~~~ 461 (462)
T TIGR00562 449 GKAAASDVLTFLF 461 (462)
T ss_pred HHHHHHHHHHhhc
Confidence 9999999988763
No 5
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=100.00 E-value=3.6e-45 Score=359.34 Aligned_cols=382 Identities=21% Similarity=0.353 Sum_probs=307.1
Q ss_pred ChhHHHhcCCCCceeeCCCCCCceEEECCeeeeCCCCC--------CCCccccCCChhhHHHhhhcccCCCCCCCCCCCc
Q 014922 1 MLKMVVDSGLKDDLVLGDPNAPRFVLWNGRLRPVPSSP--------TDLPIFDLMSIGGKIRAGLGALGLRPPPPGHEES 72 (416)
Q Consensus 1 ~~~l~~elGl~~~l~~~~~~~~~~i~~~g~~~~~p~~~--------~~~~~~~~l~~~~~lr~~~~~~~~~~~~~~~~~s 72 (416)
+++|+++|||++++++... ++++++.+|+++++|.+. ..++..+++++.+|++.+.+.+.. .....+++|
T Consensus 70 ~~~l~~~lgl~~~~~~~~~-~~~~~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s 147 (463)
T PRK12416 70 VMPLVKDLNLEEEMVYNET-GISYIYSDNTLHPIPSDTIFGIPMSVESLFSSTLVSTKGKIVALKDFITK-NKEFTKDTS 147 (463)
T ss_pred HHHHHHHcCCccceecCCC-CceEEEECCeEEECCCCCeecCCCChHHhhcCCcCCHHHHHHhhhhhccC-CCCCCCCCC
Confidence 4689999999988776443 357888899998887542 123445677777788876655321 112357899
Q ss_pred HHHHHHHhhCHHHHHHhhhhhhcccccCCcchhhHHHhhHHHHHHHHhcCChHHHHHHHHHhhccCCCCCCCCCCCCCCC
Q 014922 73 VEEFVRRNLGDEVFERLIEPFCSGVYAGDPSKLSMKAAFGKVWKLEQTGGSIIGGTFKAIQEKNKAPKQPRDPRLPKPKG 152 (416)
Q Consensus 73 ~~~~l~~~~g~~~~~~~~~p~~~~~~~~~~~~lS~~~~~~~~~~~~~~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (416)
+++|+++++|++.++++++|++.++|+++++++|+.++++.+..++..++|+++++...... +....+
T Consensus 148 v~~~l~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~------------~~~~~~ 215 (463)
T PRK12416 148 LALFLESFLGKELVERQIAPVLSGVYSGKLNELTMASTLPYLLDYKNKYGSIIKGFEENKKQ------------FQSAGN 215 (463)
T ss_pred HHHHHHHhcCHHHHHHHHHHHhcccccCCcccccHHHhhHHHHHHHHhcCcHHHHHHHhhhc------------cCCCCC
Confidence 99999999999999999999999999999999999999999888888899988775431100 000123
Q ss_pred CceeehhhhHhHHHHHHHHHhc-cceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCChHHHHhccCCCCHH
Q 014922 153 QTVGSFRKGLTMLPEAISKRLG-SKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYVASSLLRPLSVD 231 (416)
Q Consensus 153 ~~~~~~~gG~~~l~~~L~~~lg-~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~~~~~~ll~~~~~~ 231 (416)
..+++++|||++|+++|++.++ ++|++|++|++|+.++++ |.|++ .+|. ++.||+||+|+|++.+.+|+.+ +.
T Consensus 216 ~~~~~~~gG~~~l~~~l~~~l~~~~i~~~~~V~~I~~~~~~-~~v~~--~~g~-~~~ad~VI~a~p~~~~~~ll~~--~~ 289 (463)
T PRK12416 216 KKFVSFKGGLSTIIDRLEEVLTETVVKKGAVTTAVSKQGDR-YEISF--ANHE-SIQADYVVLAAPHDIAETLLQS--NE 289 (463)
T ss_pred CceEeeCCCHHHHHHHHHHhcccccEEcCCEEEEEEEcCCE-EEEEE--CCCC-EEEeCEEEECCCHHHHHhhcCC--cc
Confidence 4567899999999999999996 489999999999998887 88863 4564 7899999999999999998754 33
Q ss_pred HHhhhcCCCCCCEEEEEEEecCCccccccccCCCCCcceEEecCCCCCceEEEEccCCCCCCCCCCCcEEEEEEecC--C
Q 014922 232 AAGALSQFYYPPVAAVSVSYPKEAIRTECLIDGELKGFGQLHPRSQGVETLGTIYSSSLFPNRAPAGRVLLLNYIGG--A 309 (416)
Q Consensus 232 ~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~~p~g~~~l~~~~~~--~ 309 (416)
....+.++.+.++.+|+++|++++|.. +..++|+++|..++..+.++.|.|++|+...|++..++++++++ .
T Consensus 290 l~~~~~~~~~~~~~~v~l~~~~~~~~~------~~~g~G~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~~~~~~~~ 363 (463)
T PRK12416 290 LNEQFHTFKNSSLISIYLGFDILDEQL------PADGTGFIVTENSDLHCDACTWTSRKWKHTSGKQKLLVRMFYKSTNP 363 (463)
T ss_pred hhHHHhcCCCCceEEEEEEechhhcCC------CCCceEEEeeCCCCCeEEEEEeecCCCCCcCCCCeEEEEEEeCCCCC
Confidence 445677888999999999999876532 34578999888777777888899999988777666667777763 4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHHhhhcCCCCEEEeeccCCC
Q 014922 310 TNLGILSKKESELVEAVDRDLRKMLINPNAKDPLVLGVRVWQQAIPQFLVGHLDLLDAAKSSLRDNGYQGLFLGGNYVAG 389 (416)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~w~~~~p~~~~g~~~~~~~~~~~l~~~~~~~l~~aG~~~~g 389 (416)
..+.+.+++++++++.++++|++++|.. .+|+.+.+++|.+++|+|.+||......+++.+.. +.++||+||+++.|
T Consensus 364 ~~~~~~~~~dee~~~~~~~~L~~~lG~~--~~p~~~~v~~W~~a~P~y~~~~~~~~~~~~~~l~~-~~~~l~~aG~~~~g 440 (463)
T PRK12416 364 VYETIKNYSEEELVRVALYDIEKSLGIK--GEPEVVEVTNWKDLMPKYHLEHNQAVQSLQEKMMN-LYPNIYLAGASYYG 440 (463)
T ss_pred CchhhhcCCHHHHHHHHHHHHHHHhCCC--CCceEEEEEEccccCCCcCcCHHHHHHHHHHHHHh-hCCCeEEecccccc
Confidence 4556778899999999999999999865 47889999999999999999999988888777765 57899999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHhh
Q 014922 390 VALGRCVESAYEVASEVSNFLS 411 (416)
Q Consensus 390 ~~~~~ai~sg~~aA~~il~~l~ 411 (416)
.++++||.||+++|++|+..+.
T Consensus 441 ~~i~~ai~sg~~aA~~i~~~~~ 462 (463)
T PRK12416 441 VGIGACIGNGKNTANEIIATLN 462 (463)
T ss_pred ccHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999997653
No 6
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=100.00 E-value=1.4e-39 Score=319.51 Aligned_cols=377 Identities=30% Similarity=0.513 Sum_probs=291.2
Q ss_pred ChhHHHhcCCCCceeeCCCCCCceEEECCeeeeCCCCC----C----CCccccCCChhhHHHhhhcccCCCCCCCCCCCc
Q 014922 1 MLKMVVDSGLKDDLVLGDPNAPRFVLWNGRLRPVPSSP----T----DLPIFDLMSIGGKIRAGLGALGLRPPPPGHEES 72 (416)
Q Consensus 1 ~~~l~~elGl~~~l~~~~~~~~~~i~~~g~~~~~p~~~----~----~~~~~~~l~~~~~lr~~~~~~~~~~~~~~~~~s 72 (416)
+++|+++||+..+++.... ...+++.+|+++++|... + .++..++++..++++...... .......+++|
T Consensus 65 ~~~l~~~lgl~~~~~~~~~-~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s 142 (451)
T PRK11883 65 APALVKELGLEDELVANTT-GQSYIYVNGKLHPIPPGTVMGIPTSIAPFLFAGLVSPIGKLRAAADLR-PPRWKPGQDQS 142 (451)
T ss_pred HHHHHHHcCCccceecCCC-CcceEEECCeEEECCCCCeeccCCCchhhhcCCCCCHHHHHHhhCccc-CCCCCCCCCcC
Confidence 3689999999877665432 346888999999888531 1 111235566666666543321 11123457899
Q ss_pred HHHHHHHhhCHHHHHHhhhhhhcccccCCcchhhHHHhhHHHHHHHHhcCChHHHHHHHHHhhccCCCCCCCCCCCCCCC
Q 014922 73 VEEFVRRNLGDEVFERLIEPFCSGVYAGDPSKLSMKAAFGKVWKLEQTGGSIIGGTFKAIQEKNKAPKQPRDPRLPKPKG 152 (416)
Q Consensus 73 ~~~~l~~~~g~~~~~~~~~p~~~~~~~~~~~~lS~~~~~~~~~~~~~~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (416)
++||++++++++.++.+++|++.++|+++++++|+.++++.+..++..+++++.++........ ...+
T Consensus 143 ~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~ 210 (451)
T PRK11883 143 VGAFFRRRFGDEVVENLIEPLLSGIYAGDIDTLSLRATFPQLAQAEDKYGSLLRGMRKALPKEK------------KKTK 210 (451)
T ss_pred HHHHHHHhccHHHHHHHHHHhhceeecCChHHccHHHhHHHHHHHHHhcCcHHHHHHhhccccC------------CCCC
Confidence 9999999999999999999999999999999999999888877666667777665543221100 0123
Q ss_pred CceeehhhhHhHHHHHHHHHhcc-ceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCChHHHHhccCCCCHH
Q 014922 153 QTVGSFRKGLTMLPEAISKRLGS-KVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYVASSLLRPLSVD 231 (416)
Q Consensus 153 ~~~~~~~gG~~~l~~~L~~~lg~-~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~~~~~~ll~~~~~~ 231 (416)
...++++|||++|+++|++.++. +|++|++|++|+.++++ |+|++ .+|+ ++.||+||+|+|++.+.+++.+ +.
T Consensus 211 ~~~~~~~~G~~~l~~~l~~~l~~~~i~~~~~V~~i~~~~~~-~~v~~--~~g~-~~~~d~vI~a~p~~~~~~l~~~--~~ 284 (451)
T PRK11883 211 GVFGTLKGGLQSLIEALEEKLPAGTIHKGTPVTKIDKSGDG-YEIVL--SNGG-EIEADAVIVAVPHPVLPSLFVA--PP 284 (451)
T ss_pred CceEeeccHHHHHHHHHHHhCcCCeEEeCCEEEEEEEcCCe-EEEEE--CCCC-EEEcCEEEECCCHHHHHHhccC--hh
Confidence 45678999999999999999976 89999999999998876 88764 4664 7899999999999999999654 34
Q ss_pred HHhhhcCCCCCCEEEEEEEecCCccccccccCCCCCcceEEecCCCCCceEEEEccCCCCCCCCCCCcEEEEEEecCCCC
Q 014922 232 AAGALSQFYYPPVAAVSVSYPKEAIRTECLIDGELKGFGQLHPRSQGVETLGTIYSSSLFPNRAPAGRVLLLNYIGGATN 311 (416)
Q Consensus 232 ~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~~p~g~~~l~~~~~~~~~ 311 (416)
..+.+.++.|.++.+|++.|+++++. ...+++++++.+++.++.+++|+++.++...|+|..++..+.+...+
T Consensus 285 ~~~~~~~~~~~~~~~v~l~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~p~g~~~~~~~~~~~~~ 357 (451)
T PRK11883 285 AFALFKTIPSTSVATVALAFPESATN-------LPDGTGFLVARNSDYTITACTWTSKKWPHTTPEGKVLLRLYVGRPGD 357 (451)
T ss_pred HHHHHhCCCCCceEEEEEEeccccCC-------CCCceEEEecCCCCCcEEEEEeEcCcCCCCCCCCcEEEEEecCCCCC
Confidence 56778899999999999999987521 22346766665556667778888888888888887777776655444
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHHhhhcCCCCEEEeeccCCCCc
Q 014922 312 LGILSKKESELVEAVDRDLRKMLINPNAKDPLVLGVRVWQQAIPQFLVGHLDLLDAAKSSLRDNGYQGLFLGGNYVAGVA 391 (416)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~w~~~~p~~~~g~~~~~~~~~~~l~~~~~~~l~~aG~~~~g~~ 391 (416)
....+.+++++++.++++|++++|.. .+|....+++|.+++|.+.+|+......+++.+.+ +++||+||+|+.+.+
T Consensus 358 ~~~~~~~~~~~~~~~~~~L~~~~g~~--~~~~~~~~~rw~~a~p~~~~~~~~~~~~l~~~l~~--~~~l~~aG~~~~g~~ 433 (451)
T PRK11883 358 EAVVDATDEELVAFVLADLSKVMGIT--GDPEFTIVQRWKEAMPQYGVGHIERVAELRAGLPH--YPGLYVAGASFEGVG 433 (451)
T ss_pred chhccCCHHHHHHHHHHHHHHHhCCC--CCceEEEEeecCccCCCCCccHHHHHHHHHHhhhh--CCCEEEECcccCCcc
Confidence 44567889999999999999999854 36778899999999999999998777776666653 579999999999999
Q ss_pred hhHHHHHHHHHHHHHHH
Q 014922 392 LGRCVESAYEVASEVSN 408 (416)
Q Consensus 392 ~~~ai~sg~~aA~~il~ 408 (416)
+++|+.||+++|++|+.
T Consensus 434 i~~av~sg~~~a~~i~~ 450 (451)
T PRK11883 434 LPDCIAQAKRAAARLLA 450 (451)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999999875
No 7
>PRK07233 hypothetical protein; Provisional
Probab=100.00 E-value=5.3e-33 Score=271.70 Aligned_cols=360 Identities=21% Similarity=0.290 Sum_probs=260.0
Q ss_pred ChhHHHhcCCCCceeeCCCCCCceEEECCeeeeCCCCCCCCccccCCChhhHHHhhhcccCCC---CCCCCCCCcHHHHH
Q 014922 1 MLKMVVDSGLKDDLVLGDPNAPRFVLWNGRLRPVPSSPTDLPIFDLMSIGGKIRAGLGALGLR---PPPPGHEESVEEFV 77 (416)
Q Consensus 1 ~~~l~~elGl~~~l~~~~~~~~~~i~~~g~~~~~p~~~~~~~~~~~l~~~~~lr~~~~~~~~~---~~~~~~~~s~~~~l 77 (416)
+++|+++||+.+++.+... ...++++|+.++++.. ..++.++.++..++++.....+... .....+++|+++|+
T Consensus 62 ~~~l~~~lg~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l 138 (434)
T PRK07233 62 LLELLDELGLEDKLRWRET--KTGYYVDGKLYPLGTP-LELLRFPHLSLIDKFRLGLLTLLARRIKDWRALDKVPAEEWL 138 (434)
T ss_pred HHHHHHHcCCCCceeeccC--ceEEEECCeEecCCCH-HHHHcCCCCCHHHHHHhHHHHHhhhhcccccccccccHHHHH
Confidence 3689999999887776543 3456788887776532 2223345666677776544332211 11235789999999
Q ss_pred HHhhCHHHHHHhhhhhhcccccCCcchhhHHHhhHHHHHHHHhcCChHHHHHHHHHhhccCCCCCCCCCCCCCCCCceee
Q 014922 78 RRNLGDEVFERLIEPFCSGVYAGDPSKLSMKAAFGKVWKLEQTGGSIIGGTFKAIQEKNKAPKQPRDPRLPKPKGQTVGS 157 (416)
Q Consensus 78 ~~~~g~~~~~~~~~p~~~~~~~~~~~~lS~~~~~~~~~~~~~~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (416)
.++++++.++.+++|++.++|+.+++++|+.+++..+........ ......+++
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~ 192 (434)
T PRK07233 139 RRWSGEGVYEVFWEPLLESKFGDYADDVSAAWLWSRIKRRGNRRY--------------------------SLFGEKLGY 192 (434)
T ss_pred HHhcCHHHHHHHHHHHHhcccCCCccccCHHHHHHHHhhhhcccc--------------------------ccCCceEec
Confidence 999999999999999999999999999999988777652110000 001234678
Q ss_pred hhhhHhHHHHHHHHHh---ccceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCChHHHHhccCCCCHHHHh
Q 014922 158 FRKGLTMLPEAISKRL---GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYVASSLLRPLSVDAAG 234 (416)
Q Consensus 158 ~~gG~~~l~~~L~~~l---g~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~~~~~~ll~~~~~~~~~ 234 (416)
++||+++|+++|++.+ |++|++|++|++|+.++++ +++.. .+|. +++||+||+|+|+..+.+++++.++...+
T Consensus 193 ~~gG~~~l~~~l~~~l~~~g~~v~~~~~V~~i~~~~~~-~~~~~--~~~~-~~~ad~vI~a~p~~~~~~ll~~~~~~~~~ 268 (434)
T PRK07233 193 LEGGFATLIDALAEAIEARGGEIRLGTPVTSVVIDGGG-VTGVE--VDGE-EEDFDAVISTAPPPILARLVPDLPADVLA 268 (434)
T ss_pred cCCCHHHHHHHHHHHHHhcCceEEeCCCeeEEEEcCCc-eEEEE--eCCc-eEECCEEEECCCHHHHHhhcCCCcHHHHh
Confidence 9999999999999988 5689999999999988776 65442 2443 78999999999999999998766666677
Q ss_pred hhcCCCCCCEEEEEEEecCCccccccccCCCCCcceEEecCCCCCceEEEEccCCCCCCCCCCCcEEE--EEEecCCCCC
Q 014922 235 ALSQFYYPPVAAVSVSYPKEAIRTECLIDGELKGFGQLHPRSQGVETLGTIYSSSLFPNRAPAGRVLL--LNYIGGATNL 312 (416)
Q Consensus 235 ~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~~p~g~~~l--~~~~~~~~~~ 312 (416)
.++++.|.+..++++.++++.+. .+ ++....+..++.++++.++.++...|+|.+++ .+++.+..
T Consensus 269 ~~~~~~~~~~~~~~l~~~~~~~~----------~~-~~~~~~~~~~~~~~~~~s~~~~~~~~~g~~~~~~~~~~~~~~-- 335 (434)
T PRK07233 269 RLRRIDYQGVVCMVLKLRRPLTD----------YY-WLNINDPGAPFGGVIEHTNLVPPERYGGEHLVYLPKYLPGDH-- 335 (434)
T ss_pred hhcccCccceEEEEEEecCCCCC----------Cc-eeeecCCCCCcceEEEecccCCccccCCceEEEEeeecCCCC--
Confidence 78888999999999999986421 11 22212222344556656666665665566543 44554332
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHHhhhcCCCCEEEeeccCC---C
Q 014922 313 GILSKKESELVEAVDRDLRKMLINPNAKDPLVLGVRVWQQAIPQFLVGHLDLLDAAKSSLRDNGYQGLFLGGNYVA---G 389 (416)
Q Consensus 313 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~w~~~~p~~~~g~~~~~~~~~~~l~~~~~~~l~~aG~~~~---g 389 (416)
.+..++++++++.++++|+++++.....++....+.+|++++|.+.+|+....+ .+.+ +.+||||||+++. +
T Consensus 336 ~~~~~~~~~~~~~~~~~L~~~~p~~~~~~~~~~~~~r~~~a~~~~~~g~~~~~~----~~~~-~~~~l~~aG~~~~~~~~ 410 (434)
T PRK07233 336 PLWQMSDEELLDRFLSYLRKMFPDFDRDDVRAVRISRAPYAQPIYEPGYLDKIP----PYDT-PIEGLYLAGMSQIYPED 410 (434)
T ss_pred hhhcCCHHHHHHHHHHHHHHhCCCCChhheeeEEEEEeccccccccCchhhcCC----Cccc-CcCCEEEeCCcccCCcc
Confidence 245678899999999999999874333456778889999999999998654333 3444 6799999998532 3
Q ss_pred CchhHHHHHHHHHHHHHHHHhh
Q 014922 390 VALGRCVESAYEVASEVSNFLS 411 (416)
Q Consensus 390 ~~~~~ai~sg~~aA~~il~~l~ 411 (416)
.++++|+.||++||++|++.+.
T Consensus 411 ~~~~~Ai~sG~~aA~~i~~~~~ 432 (434)
T PRK07233 411 RSINGSVRAGRRVAREILEDRR 432 (434)
T ss_pred CchhHHHHHHHHHHHHHhhhhc
Confidence 4799999999999999998765
No 8
>PRK07208 hypothetical protein; Provisional
Probab=100.00 E-value=8.7e-33 Score=272.91 Aligned_cols=385 Identities=15% Similarity=0.135 Sum_probs=258.4
Q ss_pred ChhHHHhcCCCCceeeCCCCCCceEEECCeeeeCCCCCCCCccccCCChhhHHHhhhcccCCCCCCCCCCCcHHHHHHHh
Q 014922 1 MLKMVVDSGLKDDLVLGDPNAPRFVLWNGRLRPVPSSPTDLPIFDLMSIGGKIRAGLGALGLRPPPPGHEESVEEFVRRN 80 (416)
Q Consensus 1 ~~~l~~elGl~~~l~~~~~~~~~~i~~~g~~~~~p~~~~~~~~~~~l~~~~~lr~~~~~~~~~~~~~~~~~s~~~~l~~~ 80 (416)
+++|++|||+.+++.... ..++++++|+++.+|.+...++ ..+++..+++.+...+.-+.....+++|++||++++
T Consensus 67 ~~~l~~~l~~~~~~~~~~--~~~~~~~~g~~~~~p~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~l~~~ 142 (479)
T PRK07208 67 VMDLWNEILPDDDFLLRP--RLSRIYYRGKFFDYPLKAFDAL--KNLGLWRTAKCGASYLKARLRPRKEEDSFEDWVINR 142 (479)
T ss_pred HHHHHHHhcCCCcccccc--ccceEEECCEEecCCcchhHHH--HhCCHhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHh
Confidence 478999999865554322 2468889999998886532222 245555566655443211111124789999999999
Q ss_pred hCHHHHHHhhhhhhcccccCCcchhhHHHhhHHHHHHHHhcCChHHHHHHHHHhhccCCCCCCCCCCCCCCCCceeehhh
Q 014922 81 LGDEVFERLIEPFCSGVYAGDPSKLSMKAAFGKVWKLEQTGGSIIGGTFKAIQEKNKAPKQPRDPRLPKPKGQTVGSFRK 160 (416)
Q Consensus 81 ~g~~~~~~~~~p~~~~~~~~~~~~lS~~~~~~~~~~~~~~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 160 (416)
+|+++++++++|++.++|+.+++++|+.++++++. ++++.+.+...+..........+. .. ......+.+++|
T Consensus 143 ~g~~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~p~g 215 (479)
T PRK07208 143 FGRRLYSTFFKGYTEKVWGVPCDEISADWAAQRIK-----GLSLGKAIRNALRRSLGLKRRNKE-VE-TSLIEEFRYPKL 215 (479)
T ss_pred hCHHHHHHHHHHhhhhhhCCChHHCCChHHhCccc-----CCCHHHHHHHHhhhcccccccCCC-cc-ccceeEEeCCCC
Confidence 99999999999999999999999999999877653 334332222112110000000000 00 001134668899
Q ss_pred hHhHHHHHHHHHh---ccceecCceeeeEEEcCCCce-EEEEeCCCCc-eEEecCEEEEcCChHHHHhccCC-CCHHHHh
Q 014922 161 GLTMLPEAISKRL---GSKVKLSWKLSGVKKLDSGEY-SLTYETPEGL-VSLRSRSVVMTVPSYVASSLLRP-LSVDAAG 234 (416)
Q Consensus 161 G~~~l~~~L~~~l---g~~I~l~~~V~~I~~~~~~~v-~v~~~~~~g~-~~~~ad~VI~a~p~~~~~~ll~~-~~~~~~~ 234 (416)
|+++|+++|++.+ |++|++|++|++|+.++++.+ .+++...+|. .++.||+||+|+|++.+.+++.+ .++...+
T Consensus 216 G~~~l~~~L~~~l~~~g~~i~~~~~V~~I~~~~~~~v~~~~~~~~~g~~~~~~ad~VI~a~p~~~l~~~l~~~~~~~~~~ 295 (479)
T PRK07208 216 GPGQLWETAAEKLEALGGKVVLNAKVVGLHHDGDGRIAVVVVNDTDGTEETVTADQVISSMPLRELVAALDPPPPPEVRA 295 (479)
T ss_pred CcchHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCcEEEEEEEEcCCCCEEEEEcCEEEECCCHHHHHHhcCCCCCHHHHH
Confidence 9999999999987 579999999999999877622 2332233453 35889999999999999988764 3456677
Q ss_pred hhcCCCCCCEEEEEEEecCCccccccccCCCCCcceEEecCCCCCceEEEEccCCCCCCCCCCCc-EEEEEEecCCCCCC
Q 014922 235 ALSQFYYPPVAAVSVSYPKEAIRTECLIDGELKGFGQLHPRSQGVETLGTIYSSSLFPNRAPAGR-VLLLNYIGGATNLG 313 (416)
Q Consensus 235 ~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~~p~g~-~~l~~~~~~~~~~~ 313 (416)
.+.++.|.++.+|++.|+++.+.. ..+.++ +.. ...+..+...++..+...|+|. ..+.+.+.......
T Consensus 296 ~~~~l~~~~~~~v~l~~~~~~~~~--------~~~~~~-~~~-~~~~~r~~~~~~~~~~~~p~g~~~~l~~~~~~~~~~~ 365 (479)
T PRK07208 296 AAAGLRYRDFITVGLLVKELNLFP--------DNWIYI-HDP-DVKVGRLQNFNNWSPYLVPDGRDTWLGLEYFCFEGDD 365 (479)
T ss_pred HHhCCCcceeEEEEEEecCCCCCC--------CceEEe-cCC-CCccceecccccCCcccCCCCCceEEEEEEEccCCCc
Confidence 788899999999999999864321 112222 221 1111112222333345667776 33332121122334
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHHhhhcCCCCEEEeeccC--CCCc
Q 014922 314 ILSKKESELVEAVDRDLRKMLINPNAKDPLVLGVRVWQQAIPQFLVGHLDLLDAAKSSLRDNGYQGLFLGGNYV--AGVA 391 (416)
Q Consensus 314 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~w~~~~p~~~~g~~~~~~~~~~~l~~~~~~~l~~aG~~~--~g~~ 391 (416)
+++++++++++.++++|.++ +......+..+.+.+|++++|+|.+||......++..+. +.+||++||++. ...+
T Consensus 366 ~~~~~deel~~~~~~~L~~l-~~~~~~~~~~~~v~r~~~a~P~y~~~~~~~~~~~~~~~~--~~~~l~laGr~~~~~~~~ 442 (479)
T PRK07208 366 LWNMSDEDLIALAIQELARL-GLIRPADVEDGFVVRVPKAYPVYDGTYERNVEIIRDLLD--HFPNLHLVGRNGMHRYNN 442 (479)
T ss_pred cccCCHHHHHHHHHHHHHHc-CCCChhheeEEEEEEecCcccCCCchHHHHHHHHHHHHH--hcCCceeeccccccccCC
Confidence 56789999999999999996 532235678889999999999999999988887765443 478999999643 2357
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 014922 392 LGRCVESAYEVASEVSNF 409 (416)
Q Consensus 392 ~~~ai~sg~~aA~~il~~ 409 (416)
++.|+.||.++|++|+..
T Consensus 443 ~d~a~~sg~~~a~~i~~~ 460 (479)
T PRK07208 443 QDHSMLTAMLAVENIIAG 460 (479)
T ss_pred hhHHHHHHHHHHHHHhcC
Confidence 888999999999998765
No 9
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=100.00 E-value=9.1e-32 Score=261.80 Aligned_cols=348 Identities=20% Similarity=0.220 Sum_probs=239.0
Q ss_pred ChhHHHhcCCCCceeeCCCCCCceEEE--CCeeee-----CCCCC---CCCccccCCChhhHHHhhhcccCCC--CCCCC
Q 014922 1 MLKMVVDSGLKDDLVLGDPNAPRFVLW--NGRLRP-----VPSSP---TDLPIFDLMSIGGKIRAGLGALGLR--PPPPG 68 (416)
Q Consensus 1 ~~~l~~elGl~~~l~~~~~~~~~~i~~--~g~~~~-----~p~~~---~~~~~~~~l~~~~~lr~~~~~~~~~--~~~~~ 68 (416)
+++|++|||+...+..... .++++ +|+... +|.+. ..++..+.++..++.+.......+. .....
T Consensus 52 ~~~l~~~lgl~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 128 (419)
T TIGR03467 52 LLALLRRIGAEPRLQGPRL---PLPFYDPGGRLSRLRLSRLPAPLHLARGLLRAPGLSWADKLALARALLALRRTRFRAL 128 (419)
T ss_pred HHHHHHHhCCchhhhcccC---CcceecCCCCceeecCCCCCCCHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhcCcccc
Confidence 3689999999876553221 23332 333212 22111 1123345677777766543221111 11246
Q ss_pred CCCcHHHHHHHh-hCHHHHHHhhhhhhcccccCCcchhhHHHhhHHHHHHHHhcCChHHHHHHHHHhhccCCCCCCCCCC
Q 014922 69 HEESVEEFVRRN-LGDEVFERLIEPFCSGVYAGDPSKLSMKAAFGKVWKLEQTGGSIIGGTFKAIQEKNKAPKQPRDPRL 147 (416)
Q Consensus 69 ~~~s~~~~l~~~-~g~~~~~~~~~p~~~~~~~~~~~~lS~~~~~~~~~~~~~~~gs~~~~~~~~~~~~~~~~~~~~~~~~ 147 (416)
+++|+++|++++ ++++..+.+++|++.++|+.+++++|+.+++..++... . .
T Consensus 129 ~~~s~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~---~-------~----------------- 181 (419)
T TIGR03467 129 DDTTVGDWLQAAGQSERLIERLWEPLLLSALNTPPERASAALAAKVLRDSF---L-------A----------------- 181 (419)
T ss_pred CCCCHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH---h-------c-----------------
Confidence 789999999987 48899999999999999999999999998877665210 0 0
Q ss_pred CCCCCCceeehhhhHhHHHH-HHHHHh---ccceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCChHHHHh
Q 014922 148 PKPKGQTVGSFRKGLTMLPE-AISKRL---GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYVASS 223 (416)
Q Consensus 148 ~~~~~~~~~~~~gG~~~l~~-~L~~~l---g~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~~~~~~ 223 (416)
...+..+++++||+++++. +|++.+ |++|++|++|++|+.++++ |++++. .+|+ ++.||+||+|+|++++.+
T Consensus 182 -~~~~~~~~~~~gG~~~~~~~~l~~~l~~~g~~i~~~~~V~~i~~~~~~-~~~~~~-~~g~-~~~~d~vi~a~p~~~~~~ 257 (419)
T TIGR03467 182 -GRAASDLLLPRVPLSELFPEPARRWLDSRGGEVRLGTRVRSIEANAGG-IRALVL-SGGE-TLPADAVVLAVPPRHAAS 257 (419)
T ss_pred -CCCcceeeeeCCCHHHHHHHHHHHHHHHcCCEEEcCCeeeEEEEcCCc-ceEEEe-cCCc-cccCCEEEEcCCHHHHHH
Confidence 0012346788999988764 488776 6799999999999998887 776543 3453 789999999999999999
Q ss_pred ccCCCCHHHHhhhcCCCCCCEEEEEEEecCCccccccccCCCCCcceEEecCCCCCceEEEEccCCCCCCCCCCCcEEEE
Q 014922 224 LLRPLSVDAAGALSQFYYPPVAAVSVSYPKEAIRTECLIDGELKGFGQLHPRSQGVETLGTIYSSSLFPNRAPAGRVLLL 303 (416)
Q Consensus 224 ll~~~~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~~p~g~~~l~ 303 (416)
|+++ +...+.+.+++|.++.++++.|++++|.. ...+++.. . + ...+++ ++...+ ...++.
T Consensus 258 ll~~--~~~~~~l~~~~~~~~~~v~l~~~~~~~~~-------~~~~~~~~-~----~-~~~~~~---~~~~~~-~~~~~~ 318 (419)
T TIGR03467 258 LLPG--EDLGALLTALGYSPITTVHLRLDRAVRLP-------APMVGLVG-G----L-AQWLFD---RGQLAG-EPGYLA 318 (419)
T ss_pred hCCC--chHHHHHhhcCCcceEEEEEEeCCCcCCC-------CCeeeecC-C----c-eeEEEE---CCcCCC-CCCEEE
Confidence 9865 24566788899999999999999998742 12233321 1 1 123332 111112 224556
Q ss_pred EEecCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHHhhhcCCCCEEEe
Q 014922 304 NYIGGATNLGILSKKESELVEAVDRDLRKMLINPNAKDPLVLGVRVWQQAIPQFLVGHLDLLDAAKSSLRDNGYQGLFLG 383 (416)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~w~~~~p~~~~g~~~~~~~~~~~l~~~~~~~l~~a 383 (416)
+++++ +..+..++++++++.++++|++++|......+.+..+.+|.++.+.+.+|+.. +++.+.. |.++||||
T Consensus 319 ~~~~~--~~~~~~~~~e~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~----~~~~~~~-~~~~l~~a 391 (419)
T TIGR03467 319 VVISA--ARDLVDLPREELADRIVAELRRAFPRVAGAKPLWARVIKEKRATFAATPGLNR----LRPGART-PWPNLFLA 391 (419)
T ss_pred EEEec--chhhccCCHHHHHHHHHHHHHHhcCccccCCccceEEEEccCCccccCCcccc----cCCCCCC-CcCCEEEe
Confidence 66654 34567789999999999999999985432356677888998887777777632 2234445 78999999
Q ss_pred eccCCCC---chhHHHHHHHHHHHHHHH
Q 014922 384 GNYVAGV---ALGRCVESAYEVASEVSN 408 (416)
Q Consensus 384 G~~~~g~---~~~~ai~sg~~aA~~il~ 408 (416)
||++.+. ++++|+.||.+||++|++
T Consensus 392 Gd~~~~~~~~~~egA~~SG~~aA~~i~~ 419 (419)
T TIGR03467 392 GDWTATGWPATMEGAVRSGYQAAEAVLK 419 (419)
T ss_pred cccccCCCcchHHHHHHHHHHHHHHHhC
Confidence 9998753 577899999999999863
No 10
>PLN02487 zeta-carotene desaturase
Probab=99.97 E-value=2.1e-29 Score=247.84 Aligned_cols=372 Identities=13% Similarity=0.140 Sum_probs=248.3
Q ss_pred ChhHHHhcCCCCceeeCCCCCCceEEECCeeee------CCCCCC---CCccccCCChhhHHHhhhcccCC-------C-
Q 014922 1 MLKMVVDSGLKDDLVLGDPNAPRFVLWNGRLRP------VPSSPT---DLPIFDLMSIGGKIRAGLGALGL-------R- 63 (416)
Q Consensus 1 ~~~l~~elGl~~~l~~~~~~~~~~i~~~g~~~~------~p~~~~---~~~~~~~l~~~~~lr~~~~~~~~-------~- 63 (416)
+++++++||+.+++.+... ...++..+|++.. ++.+.. .++.++.+++.+|++........ .
T Consensus 139 ~~~ll~~LGl~~~~~~~~~-~~~~~~~~g~~~~~~~~~p~~~pl~~~~~~l~~~~Ls~~dklr~~~~l~~~~~~~al~~~ 217 (569)
T PLN02487 139 LFRLMKKVGADENLLVKDH-THTFVNKGGDVGELDFRFPVGAPLHGIKAFLTTNQLEPYDKARNALALATSPVVRALVDP 217 (569)
T ss_pred HHHHHHhcCCccccccccc-ceeEEecCCEEeeeccCCCCCchhhhHHHHHcCCCCCHHHHHhhcccccccchhhhccCc
Confidence 3689999999988766433 2234445666632 222211 34557889998999875443111 0
Q ss_pred -----CCCCCCCCcHHHHHHHhhCHH-HHHHhhhhhhcccccCCcchhhHHHhhHHHHHHHHhcCChHHHHHHHHHhhcc
Q 014922 64 -----PPPPGHEESVEEFVRRNLGDE-VFERLIEPFCSGVYAGDPSKLSMKAAFGKVWKLEQTGGSIIGGTFKAIQEKNK 137 (416)
Q Consensus 64 -----~~~~~~~~s~~~~l~~~~g~~-~~~~~~~p~~~~~~~~~~~~lS~~~~~~~~~~~~~~~gs~~~~~~~~~~~~~~ 137 (416)
.+...+++|+++|++++.+++ .+++||+|++.+.++.+++++|+.+++..|..+. .+
T Consensus 218 ~~~~~~~~~~d~~sv~~~l~r~~g~~~~~~~l~dPll~~~~~~~~d~~SA~~~~~vl~~~~--~~--------------- 280 (569)
T PLN02487 218 DGAMRDIRDLDDISFSDWFTSHGGTRMSIKRMWDPIAYALGFIDCDNISARCMLTIFSLFA--TK--------------- 280 (569)
T ss_pred cccccccccccCCcHHHHHHHhCCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHh--hc---------------
Confidence 122467899999999998854 9999999999999999999999999888775210 00
Q ss_pred CCCCCCCCCCCCCCCCceeehhhhHhH-HHHHHHHHh---ccceecCceeeeEEEcC--CC---ceEEEEe-CCCCceEE
Q 014922 138 APKQPRDPRLPKPKGQTVGSFRKGLTM-LPEAISKRL---GSKVKLSWKLSGVKKLD--SG---EYSLTYE-TPEGLVSL 207 (416)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~gG~~~-l~~~L~~~l---g~~I~l~~~V~~I~~~~--~~---~v~v~~~-~~~g~~~~ 207 (416)
..+..+.+++||++. |++++++.| |++|+++++|++|+.+. ++ .+.|++. ..++ +.+
T Consensus 281 ------------~~~~~l~~~~Gg~~~~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~-~~~ 347 (569)
T PLN02487 281 ------------TEASLLRMLKGSPDVRLSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEK-EIV 347 (569)
T ss_pred ------------CCcceeeecCCCchHHHHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCc-eEE
Confidence 112346889999995 999999887 68999999999999974 22 1234431 1233 368
Q ss_pred ecCEEEEcCChHHHHhccCCCCHH--HHhhhcCCCCCCEEEEEEEecCCcccccccc-CCC---CCcce-EEecCCCCCc
Q 014922 208 RSRSVVMTVPSYVASSLLRPLSVD--AAGALSQFYYPPVAAVSVSYPKEAIRTECLI-DGE---LKGFG-QLHPRSQGVE 280 (416)
Q Consensus 208 ~ad~VI~a~p~~~~~~ll~~~~~~--~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~-~~~---~~~~~-~l~~~~~~~~ 280 (416)
.+|+||+|+|++.+.+|+++..++ ....+.++.+.+++.|+|.|+++.-...... +.. ..|+. ++...+....
T Consensus 348 ~aD~VV~A~p~~~~~~Llp~~~~~~~~~~~l~~L~~~pi~tv~L~~d~~v~~~~~~~~~r~l~~~~g~~~~~~~~~~~~~ 427 (569)
T PLN02487 348 KADAYVAACDVPGIKRLLPEQWREYEFFDNIYKLVGVPVVTVQLRYNGWVTEMQDLELSRQLRRAAGLDNLLYSADADFS 427 (569)
T ss_pred ECCEEEECCCHHHHHHhCCchhhccHHHhHHhcCCCeeEEEEEEEecccccccccccccccccccccccccccccCCCcc
Confidence 899999999999999999876432 3556778888899999999998642110000 000 11111 1110111112
Q ss_pred eEEEEccCCCCCCCCCCCcEEEEEEecCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCCCcEEEEEecCCCCCCCCCC
Q 014922 281 TLGTIYSSSLFPNRAPAGRVLLLNYIGGATNLGILSKKESELVEAVDRDLRKMLINPNAKDPLVLGVRVWQQAIPQFLVG 360 (416)
Q Consensus 281 ~~~~~~~s~~~~~~~p~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~w~~~~p~~~~g 360 (416)
+.+.+.....-+-..+.+...+.+++... +.+..++++++++.+.++|.+++|......+.+..+.+.+.+.....||
T Consensus 428 f~~di~l~~~~~~~~~~~g~~l~~vis~a--~~~~~~~~~ei~~~~~~~L~~~~p~~~~~~v~~~~vv~~~~at~~~~pg 505 (569)
T PLN02487 428 CFADLALTSPEDYYKEGEGSLIQAVLTPG--DPYMPLSNDKIVEKVHKQVLELFPSSRGLEVTWSSVVKIGQSLYREAPG 505 (569)
T ss_pred eEeeeecCCHHHHcccCCceEEEEEEcCC--ccccCCCHHHHHHHHHHHHHHhCcccccCceEEEEEEEccCceeccCCC
Confidence 21111000000000122235677777543 4577899999999999999999986433456777888999888888888
Q ss_pred HHHHHHHHHHHhhhcCCCCEEEeeccCCC---CchhHHHHHHHHHHHHHHHHh
Q 014922 361 HLDLLDAAKSSLRDNGYQGLFLGGNYVAG---VALGRCVESAYEVASEVSNFL 410 (416)
Q Consensus 361 ~~~~~~~~~~~l~~~~~~~l~~aG~~~~g---~~~~~ai~sg~~aA~~il~~l 410 (416)
.... ++..++ +++|||+||||+.. .++++|++||.+||+.|+...
T Consensus 506 ~~~~----RP~~~T-~~~nl~LAGD~t~~~yPat~EgAv~SG~~AA~~i~~~~ 553 (569)
T PLN02487 506 MDPF----RPDQKT-PISNFFLAGSYTKQDYIDSMEGATLSGRQAAAYICEAG 553 (569)
T ss_pred cccc----CCCCCC-CCCCEEEeCcccccCCcchHHHHHHHHHHHHHHHHHHh
Confidence 6432 234455 78999999999863 357889999999999998764
No 11
>PLN02612 phytoene desaturase
Probab=99.97 E-value=5.2e-29 Score=248.07 Aligned_cols=359 Identities=15% Similarity=0.198 Sum_probs=234.6
Q ss_pred ChhHHHhcCCCCceeeCCCCCCceEEE---CCeee--eCCC----CC---CCCc-cccCCChhhHHHhhhcccC--C---
Q 014922 1 MLKMVVDSGLKDDLVLGDPNAPRFVLW---NGRLR--PVPS----SP---TDLP-IFDLMSIGGKIRAGLGALG--L--- 62 (416)
Q Consensus 1 ~~~l~~elGl~~~l~~~~~~~~~~i~~---~g~~~--~~p~----~~---~~~~-~~~~l~~~~~lr~~~~~~~--~--- 62 (416)
+++|++|||+.+.+.+.... ..+.. .+++. .+|. .. ..++ ..+.+++.++++.....+. .
T Consensus 157 ~~~ll~elG~~~~~~~~~~~--~~~~~~~~~~~~~~~~~p~~~P~~l~~~~~~l~~~~~ls~~~kl~~~~~~~~~~~~~~ 234 (567)
T PLN02612 157 VQNLFGELGINDRLQWKEHS--MIFAMPNKPGEFSRFDFPEVLPAPLNGIWAILRNNEMLTWPEKIKFAIGLLPAIVGGQ 234 (567)
T ss_pred HHHHHHHhCCcccceecccc--eEEEecCCCCceeeCcCchhcCChhhhhHHHHhcCccCCHHHHHHHHHhhhHHhcccc
Confidence 36899999998877654432 22222 23332 3332 11 1122 2356788888886543211 1
Q ss_pred CCCCCCCCCcHHHHHHHh-hCHHHHHHhhhhhhcccccCCcchhhHHHhhHHHHHHHHhcCChHHHHHHHHHhhccCCCC
Q 014922 63 RPPPPGHEESVEEFVRRN-LGDEVFERLIEPFCSGVYAGDPSKLSMKAAFGKVWKLEQTGGSIIGGTFKAIQEKNKAPKQ 141 (416)
Q Consensus 63 ~~~~~~~~~s~~~~l~~~-~g~~~~~~~~~p~~~~~~~~~~~~lS~~~~~~~~~~~~~~~gs~~~~~~~~~~~~~~~~~~ 141 (416)
......+++|+.||+++. +++...+.+|+|++.++++.+++++|+.+++..+..+...
T Consensus 235 ~~~~~~d~~Sv~e~l~~~~~~~~~~~~~~~~l~~~~~~~~p~~~S~~~~l~~l~~~l~~--------------------- 293 (567)
T PLN02612 235 AYVEAQDGLSVKEWMRKQGVPDRVNDEVFIAMSKALNFINPDELSMQCILIALNRFLQE--------------------- 293 (567)
T ss_pred hhhhhcCcCcHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCHHHhhHHHHHHHHHHHHhc---------------------
Confidence 111235789999999985 5777888899999999999999999999998877632110
Q ss_pred CCCCCCCCCCCCceeehhhhH-hHHHHHHHHHh---ccceecCceeeeEEEcCCCc-eEEEEeCCCCceEEecCEEEEcC
Q 014922 142 PRDPRLPKPKGQTVGSFRKGL-TMLPEAISKRL---GSKVKLSWKLSGVKKLDSGE-YSLTYETPEGLVSLRSRSVVMTV 216 (416)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~gG~-~~l~~~L~~~l---g~~I~l~~~V~~I~~~~~~~-v~v~~~~~~g~~~~~ad~VI~a~ 216 (416)
..+..+.++.|+. +.++++|++.+ |++|++|++|++|+.++++. +.|. ..+|+ +++||+||+|+
T Consensus 294 --------~~gs~~~~~~G~~~~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~--~~~G~-~~~ad~VI~a~ 362 (567)
T PLN02612 294 --------KHGSKMAFLDGNPPERLCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFL--LTNGS-VVEGDVYVSAT 362 (567)
T ss_pred --------cCCceEeeecCCchHHHHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEE--ECCCc-EEECCEEEECC
Confidence 0122344555654 56788888764 78999999999999876652 2244 34674 78999999999
Q ss_pred ChHHHHhccCCCC--HHHHhhhcCCCCCCEEEEEEEecCCccccccccCCCCCcceEEecCCCCCceEEEEcc-CCCCCC
Q 014922 217 PSYVASSLLRPLS--VDAAGALSQFYYPPVAAVSVSYPKEAIRTECLIDGELKGFGQLHPRSQGVETLGTIYS-SSLFPN 293 (416)
Q Consensus 217 p~~~~~~ll~~~~--~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-s~~~~~ 293 (416)
|+..+.+|+++.. ....+.++++.+.++++|+++|++++|.. .. .+++ ..+... .++++ +...+.
T Consensus 363 p~~~l~~Ll~~~~~~~~~~~~l~~l~~~~v~~v~l~~dr~~~~~-------~~--~~~~-~~~~~~--~~~~d~S~~~~~ 430 (567)
T PLN02612 363 PVDILKLLLPDQWKEIPYFKKLDKLVGVPVINVHIWFDRKLKNT-------YD--HLLF-SRSPLL--SVYADMSTTCKE 430 (567)
T ss_pred CHHHHHHhCcchhcCcHHHHHHHhcCCCCeEEEEEEECcccCCC-------CC--ceee-cCCCCc--eeehhhhhcchh
Confidence 9999998876532 23455667778889999999999997642 11 2222 222211 12221 222223
Q ss_pred CCCCCcEEEEEEecCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCC-----CCcEEEEEecCCCCCCCCCCHHHHHHHH
Q 014922 294 RAPAGRVLLLNYIGGATNLGILSKKESELVEAVDRDLRKMLINPNAK-----DPLVLGVRVWQQAIPQFLVGHLDLLDAA 368 (416)
Q Consensus 294 ~~p~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~~~~~~w~~~~p~~~~g~~~~~~~~ 368 (416)
..+++..++.+.+. .++.|.+++++++++.++++|++++|..... .+..+.+.+.+.++..+.+|....
T Consensus 431 ~~~~~~~ll~~~~~--~a~~~~~~sdeei~e~vl~~L~~lfp~~~~~~~~~~~i~~~~~v~~P~a~~~~~pg~~~~---- 504 (567)
T PLN02612 431 YYDPNKSMLELVFA--PAEEWISRSDEDIIDATMKELAKLFPDEISADQSKAKILKYHVVKTPRSVYKTVPNCEPC---- 504 (567)
T ss_pred hcCCCCeEEEEEEE--cChhhhcCCHHHHHHHHHHHHHHHCCcccccccCCceEEEEEEeccCCceEEeCCCCccc----
Confidence 34445566655543 3456788899999999999999999854111 123334444444433334554321
Q ss_pred HHHhhhcCCCCEEEeeccCCC---CchhHHHHHHHHHHHHHHHHhhh
Q 014922 369 KSSLRDNGYQGLFLGGNYVAG---VALGRCVESAYEVASEVSNFLSQ 412 (416)
Q Consensus 369 ~~~l~~~~~~~l~~aG~~~~g---~~~~~ai~sg~~aA~~il~~l~~ 412 (416)
++.+++ |++||||||||+.. .++++|+.||++||++|++.++.
T Consensus 505 rp~~~t-Pi~~l~lAGd~t~~~~~~smeGAv~SG~~AA~~I~~~~~~ 550 (567)
T PLN02612 505 RPLQRS-PIEGFYLAGDYTKQKYLASMEGAVLSGKLCAQSIVQDYEL 550 (567)
T ss_pred CccccC-ccCCEEEeecceeCCchhhHHHHHHHHHHHHHHHHHHhcc
Confidence 223455 88999999999853 46899999999999999988754
No 12
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=99.97 E-value=2.2e-29 Score=246.25 Aligned_cols=368 Identities=15% Similarity=0.174 Sum_probs=237.6
Q ss_pred ChhHHHhcCCCCceeeCCCCCCceEEECCeeeeCCCC---------CCCCccccCCChhhHHHhhhcccCCC--------
Q 014922 1 MLKMVVDSGLKDDLVLGDPNAPRFVLWNGRLRPVPSS---------PTDLPIFDLMSIGGKIRAGLGALGLR-------- 63 (416)
Q Consensus 1 ~~~l~~elGl~~~l~~~~~~~~~~i~~~g~~~~~p~~---------~~~~~~~~~l~~~~~lr~~~~~~~~~-------- 63 (416)
++++++++|+.+++.+.... ..++..++++..++.. +..++.++.+++.+|++.+......+
T Consensus 63 ~~~~~~~lg~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~P~~~~~~~l~~~~ls~~dklr~~~~~~~~~~~~~~~~~ 141 (474)
T TIGR02732 63 LFRLMKKVGAEDNLLLKEHT-HTFVNKGGDIGELDFRFATGAPFNGLKAFFTTSQLKWVDKLRNALALGTSPIVRGLVDY 141 (474)
T ss_pred HHHHHHHcCCccccccccce-eEEEcCCCcccccccCCCCCCchhhhHHHhcCCCCCHHHHHHHHHHhhhhHHHhhcccc
Confidence 36899999999887654321 1233345665433311 12345567899999998665431110
Q ss_pred -----CCCCCCCCcHHHHHHHhhCHH-HHHHhhhhhhcccccCCcchhhHHHhhHHHHHHHHhcCChHHHHHHHHHhhcc
Q 014922 64 -----PPPPGHEESVEEFVRRNLGDE-VFERLIEPFCSGVYAGDPSKLSMKAAFGKVWKLEQTGGSIIGGTFKAIQEKNK 137 (416)
Q Consensus 64 -----~~~~~~~~s~~~~l~~~~g~~-~~~~~~~p~~~~~~~~~~~~lS~~~~~~~~~~~~~~~gs~~~~~~~~~~~~~~ 137 (416)
.+...+++|+++|++++.+++ .+++||+|++.++++.+++++|+.++++.++.+.. +
T Consensus 142 ~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~Pll~~~~~~~~~~~Sa~~~~~~~~~~~~--~--------------- 204 (474)
T TIGR02732 142 DGAMKTIRDLDKISFAEWFLSHGGSLGSIKRMWDPIAYALGFIDCENISARCMLTIFMLFAA--K--------------- 204 (474)
T ss_pred chhhhhhhhhccccHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh--C---------------
Confidence 011347899999999998765 69999999999999999999999999887663221 0
Q ss_pred CCCCCCCCCCCCCCCCceeehhhhHhH-HHHHHHHHh---ccceecCceeeeEEEcC--CC---ceEEEEeCCCCceEEe
Q 014922 138 APKQPRDPRLPKPKGQTVGSFRKGLTM-LPEAISKRL---GSKVKLSWKLSGVKKLD--SG---EYSLTYETPEGLVSLR 208 (416)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~gG~~~-l~~~L~~~l---g~~I~l~~~V~~I~~~~--~~---~v~v~~~~~~g~~~~~ 208 (416)
..+..+.+++||++. +.+.|.+.| |++|+++++|++|+.++ ++ .+.|.+...++.+++.
T Consensus 205 ------------~~~s~~~~~~g~~~~~l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~ 272 (474)
T TIGR02732 205 ------------TEASKLRMLKGSPDKYLTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIK 272 (474)
T ss_pred ------------CCcceeeeecCCcchhHHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEE
Confidence 012345677787666 445566665 67999999999999864 22 1223332222223689
Q ss_pred cCEEEEcCChHHHHhccCCCCH--HHHhhhcCCCCCCEEEEEEEecCCccccccccC-C---CCCcce-EEecCCCCCce
Q 014922 209 SRSVVMTVPSYVASSLLRPLSV--DAAGALSQFYYPPVAAVSVSYPKEAIRTECLID-G---ELKGFG-QLHPRSQGVET 281 (416)
Q Consensus 209 ad~VI~a~p~~~~~~ll~~~~~--~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~-~---~~~~~~-~l~~~~~~~~~ 281 (416)
||+||+|+|++.+.+|+++..+ .....+.++.+.++..|++.|+++.-....... . +..++. +++..+....+
T Consensus 273 aD~VVlA~p~~~~~~Ll~~~~~~~~~~~~l~~l~~~pi~~v~l~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 352 (474)
T TIGR02732 273 ADAYVAACDVPGIKRLLPQEWRQFEEFDNIYKLDAVPVATVQLRYDGWVTELQDLAKRKQLKRAAGLDNLLYTADADFSC 352 (474)
T ss_pred CCEEEECCChHHHHhhCChhhhcCHHHhhHhcCCCCCeEEEEEEeccccccccchhhhhcccccccccccccccCcccee
Confidence 9999999999999999976432 345677888999999999999975421000000 0 000000 01111111111
Q ss_pred EEEEccCCCCC-CCCCCCc-EEEEEEecCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCCCcEEEEEecCCCCCCCCC
Q 014922 282 LGTIYSSSLFP-NRAPAGR-VLLLNYIGGATNLGILSKKESELVEAVDRDLRKMLINPNAKDPLVLGVRVWQQAIPQFLV 359 (416)
Q Consensus 282 ~~~~~~s~~~~-~~~p~g~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~w~~~~p~~~~ 359 (416)
.+.+ +...+ ...+.+. .++.+++... ..+.+++++++++.++++|++++|......+....+.+.+++.+.+.|
T Consensus 353 ~~~~--~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~l~~~~~~~L~~~~p~~~~~~~~~~~v~~~~~a~~~~~p 428 (474)
T TIGR02732 353 FADL--ALTSPDDYYKEGQGSLLQCVLTPG--DPWMPESNEEIAKRVDKQVRALFPSSKNLKLTWSSVVKLAQSLYREAP 428 (474)
T ss_pred eehh--hccCHHHHhccCCCeEEEEEEeCh--hhhcCCCHHHHHHHHHHHHHHhCccccCCceeEEEEEEecCceeccCC
Confidence 1110 00001 1122222 3455555332 346778999999999999999998533345666778899998888889
Q ss_pred CHHHHHHHHHHHhhhcCCCCEEEeeccCCC---CchhHHHHHHHHHHHHHH
Q 014922 360 GHLDLLDAAKSSLRDNGYQGLFLGGNYVAG---VALGRCVESAYEVASEVS 407 (416)
Q Consensus 360 g~~~~~~~~~~~l~~~~~~~l~~aG~~~~g---~~~~~ai~sg~~aA~~il 407 (416)
|+...++ ..++ +.+|||+||||+.. .++++|++||++||+.|+
T Consensus 429 g~~~~~P----~~~t-~~~~l~lAGD~t~~~~pas~egAv~sG~~aA~~i~ 474 (474)
T TIGR02732 429 GMDPFRP----DQKT-PISNFFLAGSYTQQDYIDSMEGATLSGRQAAAAIL 474 (474)
T ss_pred CCcccCC----CCCC-CCCCeEEeccccccCchHHHhHHHHHHHHHHHHhC
Confidence 9864332 3455 78999999999975 568889999999999874
No 13
>PLN02268 probable polyamine oxidase
Probab=99.97 E-value=7.7e-29 Score=241.85 Aligned_cols=281 Identities=19% Similarity=0.258 Sum_probs=205.9
Q ss_pred CCCCCcHHHHHHHh-----------hCHHHHHHhhhhhhcccccCCcchhhHHHhhHHHHHHHHhcCChHHHHHHHHHhh
Q 014922 67 PGHEESVEEFVRRN-----------LGDEVFERLIEPFCSGVYAGDPSKLSMKAAFGKVWKLEQTGGSIIGGTFKAIQEK 135 (416)
Q Consensus 67 ~~~~~s~~~~l~~~-----------~g~~~~~~~~~p~~~~~~~~~~~~lS~~~~~~~~~~~~~~~gs~~~~~~~~~~~~ 135 (416)
..+++|+++|+++. +++++.+.++.| +.+.|+.+++++|+..... ..+
T Consensus 130 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ls~~~~~~---------~~~----------- 188 (435)
T PLN02268 130 HEEDMSLLQAISIVLERHPELRLEGLAHEVLQWYLCR-MEGWFAADADTISLKSWDQ---------EEL----------- 188 (435)
T ss_pred cCCCcCHHHHHHHHhhhCcccccchHHHHHHHHHHHH-HHHHhCCChHhCchhhcCC---------ccc-----------
Confidence 35789999987543 345566666677 4678899999999865210 000
Q ss_pred ccCCCCCCCCCCCCCCCCceeehhhhHhHHHHHHHHHhccceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEc
Q 014922 136 NKAPKQPRDPRLPKPKGQTVGSFRKGLTMLPEAISKRLGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMT 215 (416)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~L~~~lg~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a 215 (416)
..|.. ..+.+|+++++++|++.+ +|++|++|++|+.++++ |+|++ .+|. ++.||+||+|
T Consensus 189 --------------~~g~~-~~~~~G~~~l~~~l~~~~--~i~~~~~V~~i~~~~~~-v~v~~--~~g~-~~~ad~VIva 247 (435)
T PLN02268 189 --------------LEGGH-GLMVRGYDPVINTLAKGL--DIRLNHRVTKIVRRYNG-VKVTV--EDGT-TFVADAAIIA 247 (435)
T ss_pred --------------cCCCc-eeecCCHHHHHHHHhccC--ceeCCCeeEEEEEcCCc-EEEEE--CCCc-EEEcCEEEEe
Confidence 01211 468899999999999866 79999999999998887 88874 4664 7899999999
Q ss_pred CChHHHHhc---cCC-CCHHHHhhhcCCCCCCEEEEEEEecCCccccccccCCCCCcceEEecCCCCCceEEEEccCCCC
Q 014922 216 VPSYVASSL---LRP-LSVDAAGALSQFYYPPVAAVSVSYPKEAIRTECLIDGELKGFGQLHPRSQGVETLGTIYSSSLF 291 (416)
Q Consensus 216 ~p~~~~~~l---l~~-~~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~~ 291 (416)
+|+.++++. +.| .++..+++++++.|.++.|+.+.|++++|++. ..+|++.+.... +.+.++..
T Consensus 248 ~P~~~l~~~~i~f~p~lp~~~~~ai~~~~~g~~~Kv~l~f~~~fw~~~-------~~~g~~~~~~~~-----~~~~~~~~ 315 (435)
T PLN02268 248 VPLGVLKANIIKFEPELPEWKEEAISDLGVGIENKIALHFDSVFWPNV-------EFLGVVAPTSYG-----CSYFLNLH 315 (435)
T ss_pred cCHHHHhcCcceecCCCCHHHHHHHHhCCccceeEEEEEeCCCCCCCC-------ceeeccCCCCCC-----ceEEEecc
Confidence 999999753 444 34556778889999999999999999999642 234544432211 11112111
Q ss_pred CCCCCCCcEEEEEEecCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCCCcEEEEEecCC------CCCCCCCCHHHHH
Q 014922 292 PNRAPAGRVLLLNYIGGATNLGILSKKESELVEAVDRDLRKMLINPNAKDPLVLGVRVWQQ------AIPQFLVGHLDLL 365 (416)
Q Consensus 292 ~~~~p~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~w~~------~~p~~~~g~~~~~ 365 (416)
.+.|..++++|+++..+..+..++++++++.++++|.+++|.. .+|..+.+++|.. ++..+.||.....
T Consensus 316 ---~~~g~~~l~~~~~g~~a~~~~~~~~~e~~~~v~~~L~~~~~~~--~~p~~~~~~~W~~dp~~~G~~~~~~~g~~~~~ 390 (435)
T PLN02268 316 ---KATGHPVLVYMPAGRLARDIEKLSDEAAANFAMSQLKKMLPDA--TEPVQYLVSRWGSDPNSLGCYSYDLVGKPHDL 390 (435)
T ss_pred ---cCCCCCEEEEEeccHHHHHHHhCCHHHHHHHHHHHHHHHcCCC--CCccEEEecccCCCCCCCccCCCCCCCCCHHH
Confidence 1235568888888877777788999999999999999999742 4788899999983 3566677754332
Q ss_pred HHHHHHhhhcCCCCEEEeeccCCC---CchhHHHHHHHHHHHHHHHHh
Q 014922 366 DAAKSSLRDNGYQGLFLGGNYVAG---VALGRCVESAYEVASEVSNFL 410 (416)
Q Consensus 366 ~~~~~~l~~~~~~~l~~aG~~~~g---~~~~~ai~sg~~aA~~il~~l 410 (416)
. +.+.+ |+++|||||+++.. .++++|+.||.+||++|+..|
T Consensus 391 ~---~~l~~-p~~~l~FAGe~ts~~~~g~~eGA~~sG~raA~~v~~~l 434 (435)
T PLN02268 391 Y---ERLRA-PVDNLFFAGEATSSDFPGSVHGAYSTGVMAAEECRMRL 434 (435)
T ss_pred H---HHHhC-CCCCeEEeeccCCCcccccHHHHHHHHHHHHHHHHHhh
Confidence 2 35666 88999999998864 358899999999999998764
No 14
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=99.96 E-value=1.5e-27 Score=233.83 Aligned_cols=354 Identities=18% Similarity=0.249 Sum_probs=227.5
Q ss_pred ChhHHHhcCCCCceeeCCCCCCceEEE----CCeee--eCCCCCCC------Cc-cccCCChhhHHHhhhcccC--C---
Q 014922 1 MLKMVVDSGLKDDLVLGDPNAPRFVLW----NGRLR--PVPSSPTD------LP-IFDLMSIGGKIRAGLGALG--L--- 62 (416)
Q Consensus 1 ~~~l~~elGl~~~l~~~~~~~~~~i~~----~g~~~--~~p~~~~~------~~-~~~~l~~~~~lr~~~~~~~--~--- 62 (416)
+++++++||+.+.+.+... ..++. +++.. .+|.-+.+ ++ ..+.+++.++++....... .
T Consensus 63 ~~~l~~~lg~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (453)
T TIGR02731 63 MLQLLKELNIEDRLQWKSH---SMIFNQPDKPGTFSRFDFPDIPAPFNGVAAILRNNDMLTWPEKIKFAIGLLPAIVRGQ 139 (453)
T ss_pred HHHHHHHcCCccceeecCC---ceEEecCCCCcceeeccCCCCCCCHHHHHHHhcCcCCCCHHHHHHHHHHhHHHHhcCc
Confidence 3689999999877665332 12222 23332 23321111 11 1235777788876543211 0
Q ss_pred CCCCCCCCCcHHHHHHH-hhCHHHHHHhhhhhhcccccCCcchhhHHHhhHHHHHHHH-hcCChHHHHHHHHHhhccCCC
Q 014922 63 RPPPPGHEESVEEFVRR-NLGDEVFERLIEPFCSGVYAGDPSKLSMKAAFGKVWKLEQ-TGGSIIGGTFKAIQEKNKAPK 140 (416)
Q Consensus 63 ~~~~~~~~~s~~~~l~~-~~g~~~~~~~~~p~~~~~~~~~~~~lS~~~~~~~~~~~~~-~~gs~~~~~~~~~~~~~~~~~ 140 (416)
+.....+++|+.+|+++ .+++.+.+.+++|++.++++.+++++|+.++++.+..+.. .++
T Consensus 140 ~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~pl~~~~~~~~p~~~S~~~~~~~l~~~~~~~~g------------------ 201 (453)
T TIGR02731 140 KYVEEQDKYTVTEWLRKQGVPERVNDEVFIAMSKALNFINPDELSMTVVLTALNRFLQERHG------------------ 201 (453)
T ss_pred cchhhhccCCHHHHHHHcCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHhcCCC------------------
Confidence 11123589999999998 5788889999999999999999999999999888764211 111
Q ss_pred CCCCCCCCCCCCCceeehhhh-HhHHHHHHHHHh---ccceecCceeeeEEEcCCCce-EEEEeCCCCce--EEecCEEE
Q 014922 141 QPRDPRLPKPKGQTVGSFRKG-LTMLPEAISKRL---GSKVKLSWKLSGVKKLDSGEY-SLTYETPEGLV--SLRSRSVV 213 (416)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~gG-~~~l~~~L~~~l---g~~I~l~~~V~~I~~~~~~~v-~v~~~~~~g~~--~~~ad~VI 213 (416)
.......|| ++.++++|.+.+ |++|++|++|++|+.++++.+ .|++.+.+|+. ++.||+||
T Consensus 202 ------------~~~~~~~g~~~~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI 269 (453)
T TIGR02731 202 ------------SKMAFLDGAPPERLCQPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYV 269 (453)
T ss_pred ------------CeeEeecCCChHHHHHHHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEE
Confidence 112233333 456777777766 779999999999987655423 34432222211 58899999
Q ss_pred EcCChHHHHhccCCCC--HHHHhhhcCCCCCCEEEEEEEecCCccccccccCCCCCcceEEecCCCCCceEEEEccCCCC
Q 014922 214 MTVPSYVASSLLRPLS--VDAAGALSQFYYPPVAAVSVSYPKEAIRTECLIDGELKGFGQLHPRSQGVETLGTIYSSSLF 291 (416)
Q Consensus 214 ~a~p~~~~~~ll~~~~--~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~~ 291 (416)
+|+|++.+.+|++... ....+.+.++++.++.++++.|+++++.. . +++++..+. ......+.+.++
T Consensus 270 ~a~p~~~~~~lL~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~--------~--~~~~~~~~~-~~~~~~~s~~~~ 338 (453)
T TIGR02731 270 SAMPVDIFKLLLPQPWKQMPFFQKLNGLEGVPVINVHIWFDRKLTTV--------D--HLLFSRSPL-LSVYADMSETCK 338 (453)
T ss_pred EcCCHHHHHhhCchhhhcCHHHHHhhcCCCCcEEEEEEEEccccCCC--------C--ceeeeCCCc-ceeecchhhhCh
Confidence 9999999999986542 23556677788889999999999986531 1 334433321 111111222333
Q ss_pred CCCCCCCcEEEEEEecCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCC-CCCC---cEEEEEecCCCCCCCCCCHHHHHHH
Q 014922 292 PNRAPAGRVLLLNYIGGATNLGILSKKESELVEAVDRDLRKMLINPN-AKDP---LVLGVRVWQQAIPQFLVGHLDLLDA 367 (416)
Q Consensus 292 ~~~~p~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~---~~~~~~~w~~~~p~~~~g~~~~~~~ 367 (416)
+...| +..++.++++.. ..+.+++++++++.++++|++++|... ...+ ..+...+.+++.+.+.||....
T Consensus 339 ~~~~~-~~~l~~~~~~~~--~~~~~~~~ee~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~p~a~~~~~pg~~~~--- 412 (453)
T TIGR02731 339 EYADP-DKSMLELVFAPA--ADWIGRSDEEIIDATMAELAKLFPNHIKADSPAKILKYKVVKTPRSVYKTTPGRQQY--- 412 (453)
T ss_pred hhcCC-CCeEEEEEecCh--hhhhcCCHHHHHHHHHHHHHHhCCcccCCCCCceEEEEEEEECCCceeccCCCChhh---
Confidence 33444 356666655432 456778999999999999999997421 1123 3334445555554566774322
Q ss_pred HHHHhhhcCCCCEEEeeccCCC---CchhHHHHHHHHHHHHH
Q 014922 368 AKSSLRDNGYQGLFLGGNYVAG---VALGRCVESAYEVASEV 406 (416)
Q Consensus 368 ~~~~l~~~~~~~l~~aG~~~~g---~~~~~ai~sg~~aA~~i 406 (416)
.+.+.+ |++||||||+|+.. .++++|++||++||++|
T Consensus 413 -~~~~~~-p~~~l~~AG~~~a~~~~g~~egAi~SG~~AA~~v 452 (453)
T TIGR02731 413 -RPHQKT-PIPNFFLAGDYTKQKYLASMEGAVLSGKLCAQAI 452 (453)
T ss_pred -CccccC-ccCCEEEeehhccCcccccHHHHHHHHHHHHHHh
Confidence 234566 78999999998752 36889999999999987
No 15
>PLN03000 amine oxidase
Probab=99.96 E-value=2.1e-27 Score=238.83 Aligned_cols=236 Identities=18% Similarity=0.209 Sum_probs=182.2
Q ss_pred eeehhhhHhHHHHHHHHHhccceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCChHHHH--hc-cCC-CCH
Q 014922 155 VGSFRKGLTMLPEAISKRLGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYVAS--SL-LRP-LSV 230 (416)
Q Consensus 155 ~~~~~gG~~~l~~~L~~~lg~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~~~~~--~l-l~~-~~~ 230 (416)
.+.++||+++|+++|++.| .|+++++|++|++++++ |+|+. .++ +++||+||+|+|+.+++ .+ |.| .++
T Consensus 373 ~~~v~GG~~~LieaLa~~L--~I~Ln~~Vt~I~~~~dg-V~V~~--~~~--~~~AD~VIvTVPlgVLk~~~I~F~PpLP~ 445 (881)
T PLN03000 373 HCFLPGGNGRLVQALAENV--PILYEKTVQTIRYGSNG-VKVIA--GNQ--VYEGDMVLCTVPLGVLKNGSIKFVPELPQ 445 (881)
T ss_pred eEEeCCCHHHHHHHHHhhC--CcccCCcEEEEEECCCe-EEEEE--CCc--EEEeceEEEcCCHHHHhhCceeeCCCCCH
Confidence 4678999999999999999 59999999999999887 88863 333 78999999999999999 34 544 445
Q ss_pred HHHhhhcCCCCCCEEEEEEEecCCccccccccCCCCCcceEEecCCCCCceEEEEccCCCCCCCCC-CCcEEEEEEecCC
Q 014922 231 DAAGALSQFYYPPVAAVSVSYPKEAIRTECLIDGELKGFGQLHPRSQGVETLGTIYSSSLFPNRAP-AGRVLLLNYIGGA 309 (416)
Q Consensus 231 ~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~~p-~g~~~l~~~~~~~ 309 (416)
..+++++++.|..+.||++.|+++||+. +...||++.+..... ....+|.+ ..| .|..+|.+|++|.
T Consensus 446 ~K~~AI~rL~~G~l~KViL~Fd~~FW~~------d~~~FG~l~~~~~~r-g~~~~f~s-----~sp~~G~pVLvafv~Gd 513 (881)
T PLN03000 446 RKLDCIKRLGFGLLNKVAMLFPYVFWST------DLDTFGHLTEDPNYR-GEFFLFYS-----YAPVAGGPLLIALVAGE 513 (881)
T ss_pred HHHHHHHcCCCcceEEEEEEeCCccccC------CCCceeEEecCCCCC-ceeEEEeC-----CCCCCCCcEEEEEecCc
Confidence 5678999999999999999999999975 345677775432211 11123222 222 3567889999988
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHhCCC--CCCCCcEEEEEecCC------CCCCCCCCHHHHHHHHHHHhhhcCC--CC
Q 014922 310 TNLGILSKKESELVEAVDRDLRKMLINP--NAKDPLVLGVRVWQQ------AIPQFLVGHLDLLDAAKSSLRDNGY--QG 379 (416)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~w~~------~~p~~~~g~~~~~~~~~~~l~~~~~--~~ 379 (416)
.+..+..++++++++.++++|.++++.. ...+|..+.+++|.. +|..+.+|......+ .+.+ |+ ++
T Consensus 514 ~A~~le~lSdeE~ve~vl~~Lrkifg~~~~~vp~Pv~~ivtrW~~DPysrGSYS~~~pG~~~~~~d---~Lae-Pv~~GR 589 (881)
T PLN03000 514 AAHKFETMPPTDAVTRVLHILRGIYEPQGINVPDPLQTVCTRWGGDPFSLGSYSNVAVGASGDDYD---ILAE-SVGDGR 589 (881)
T ss_pred hhHHhhcCCHHHHHHHHHHHHHHHhCccccccCCceEEEEccCCCCCCCCccccCCCCCCchHHHH---HHhC-cCCCCc
Confidence 8888889999999999999999999732 124688899999983 477777886443222 4555 54 58
Q ss_pred EEEeeccCCC---CchhHHHHHHHHHHHHHHHHhhhc
Q 014922 380 LFLGGNYVAG---VALGRCVESAYEVASEVSNFLSQY 413 (416)
Q Consensus 380 l~~aG~~~~g---~~~~~ai~sg~~aA~~il~~l~~~ 413 (416)
|||||+++.. .++++|+.||.+||++|+..+...
T Consensus 590 IfFAGEaTs~~~~GTVhGAieSGlRAA~eIl~~l~~~ 626 (881)
T PLN03000 590 LFFAGEATTRRYPATMHGAFVTGLREAANMAQSAKAR 626 (881)
T ss_pred EEEeehHHhCCCCeeHHHHHHHHHHHHHHHHHHhhhc
Confidence 9999987753 468899999999999999887654
No 16
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=99.96 E-value=6.2e-27 Score=235.67 Aligned_cols=238 Identities=17% Similarity=0.222 Sum_probs=180.0
Q ss_pred ceeehhhhHhHHHHHHHHHhccceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCChHHHHh--c-cCC-CC
Q 014922 154 TVGSFRKGLTMLPEAISKRLGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYVASS--L-LRP-LS 229 (416)
Q Consensus 154 ~~~~~~gG~~~l~~~L~~~lg~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~~~~~~--l-l~~-~~ 229 (416)
..+.++||+++|+++|++.+ .|++|++|++|.+.+++ |.|+ .+|. ++.||+||+|+|+.++++ + |.| .+
T Consensus 428 ~~~~v~GG~~~Li~aLa~~L--~I~ln~~V~~I~~~~dg-V~V~---~~G~-~~~AD~VIvTvPl~vLk~~~I~F~P~LP 500 (808)
T PLN02328 428 DHCFIPGGNDTFVRELAKDL--PIFYERTVESIRYGVDG-VIVY---AGGQ-EFHGDMVLCTVPLGVLKKGSIEFYPELP 500 (808)
T ss_pred eEEEECCcHHHHHHHHHhhC--CcccCCeeEEEEEcCCe-EEEE---eCCe-EEEcCEEEECCCHHHHhhcccccCCCCC
Confidence 35788999999999999999 59999999999998887 8774 2553 789999999999999984 3 544 44
Q ss_pred HHHHhhhcCCCCCCEEEEEEEecCCccccccccCCCCCcceEEecCCCCCceEEEEccCCCCCCCCCCCcEEEEEEecCC
Q 014922 230 VDAAGALSQFYYPPVAAVSVSYPKEAIRTECLIDGELKGFGQLHPRSQGVETLGTIYSSSLFPNRAPAGRVLLLNYIGGA 309 (416)
Q Consensus 230 ~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~~p~g~~~l~~~~~~~ 309 (416)
+...++++++.|.++.||.+.|+++||+. ....+|++.++....... ..|.+ +.. +.|..+|.+|+++.
T Consensus 501 ~~K~~AI~~l~yG~~~KV~L~F~~~FW~~------~~d~fG~l~~d~s~rG~~-~lf~s--~s~--~~G~~vLvafv~G~ 569 (808)
T PLN02328 501 QRKKDAIQRLGYGLLNKVALLFPYNFWGG------EIDTFGHLTEDPSMRGEF-FLFYS--YSS--VSGGPLLIALVAGD 569 (808)
T ss_pred HHHHHHHHcCCCcceEEEEEEeCCccccC------CCCceEEEeecCCCCceE-EEEec--CCC--CCCCcEEEEEecCh
Confidence 56778999999999999999999999974 234577765322111111 22222 221 23457889999988
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHhCCC--CCCCCcEEEEEecCC------CCCCCCCCHHHHHHHHHHHhhhcCC--CC
Q 014922 310 TNLGILSKKESELVEAVDRDLRKMLINP--NAKDPLVLGVRVWQQ------AIPQFLVGHLDLLDAAKSSLRDNGY--QG 379 (416)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~w~~------~~p~~~~g~~~~~~~~~~~l~~~~~--~~ 379 (416)
.+..+..++++++++.+++.|.++++.. ...+|..+.+++|.. +|..+.+|...... ..+.+ |+ ++
T Consensus 570 ~A~~~e~lsdeE~v~~vL~~Lr~ifgp~~~~vp~P~~~~vtrW~~DP~s~GSYS~~~pG~~~~~~---~~Lae-Pv~~GR 645 (808)
T PLN02328 570 AAVKFETLSPVESVKRVLQILRGIFHPKGIVVPDPVQAVCTRWGKDCFTYGSYSYVAVGSSGDDY---DILAE-SVGDGR 645 (808)
T ss_pred hhHHHhcCCHHHHHHHHHHHHHHHhCcccccccCcceEEEecCCCCCCcCCCCCCCCCCCchhHH---HHHhc-cCCCCC
Confidence 8777888999999999999999999742 124688899999983 35666677543222 24444 53 58
Q ss_pred EEEeeccCCC---CchhHHHHHHHHHHHHHHHHhhhc
Q 014922 380 LFLGGNYVAG---VALGRCVESAYEVASEVSNFLSQY 413 (416)
Q Consensus 380 l~~aG~~~~g---~~~~~ai~sg~~aA~~il~~l~~~ 413 (416)
|||||+++.. .++++|+.||.+||++|+..+++.
T Consensus 646 L~FAGEaTs~~~~GtVhGAi~SGlRAA~eIl~~~~~~ 682 (808)
T PLN02328 646 VFFAGEATNKQYPATMHGAFLSGMREAANILRVARRR 682 (808)
T ss_pred EEEEEhhHhCCCCeEhHHHHHHHHHHHHHHHHHHhhc
Confidence 9999998763 368999999999999999987655
No 17
>PLN02568 polyamine oxidase
Probab=99.96 E-value=8.2e-27 Score=229.68 Aligned_cols=321 Identities=17% Similarity=0.160 Sum_probs=224.2
Q ss_pred CCCcHHHHHHHhhCHHHHHHhhhhhhcccccCCcchhhHHHhhHHHHHHHHhcCChHH-HHHHHHHhhccCCCCCCCCCC
Q 014922 69 HEESVEEFVRRNLGDEVFERLIEPFCSGVYAGDPSKLSMKAAFGKVWKLEQTGGSIIG-GTFKAIQEKNKAPKQPRDPRL 147 (416)
Q Consensus 69 ~~~s~~~~l~~~~g~~~~~~~~~p~~~~~~~~~~~~lS~~~~~~~~~~~~~~~gs~~~-~~~~~~~~~~~~~~~~~~~~~ 147 (416)
.+.|+++|+++++++ ..+.+.+|+..++++.++++++...+++.+..++..++++.. +.+. + .. ....
T Consensus 159 ~~~Sl~~fl~~~l~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ls~ls-~-----~~----~~~~ 227 (539)
T PLN02568 159 GGGSVGSFLRRGLDA-YWDSVSADEQIKGYGGWSRKLLEEAIFTMHENTQRTYTSADDLSTLD-L-----AA----ESEY 227 (539)
T ss_pred CCCcHHHHHHHHHHH-HHhhcccchhhccccchhHHHHHHHHHHHHHHhhccccccccHhhcc-c-----cc----cCcc
Confidence 345999999999987 777888999999999999999999999988887766665432 1111 0 00 0000
Q ss_pred CCCCCCceeehhhhHhHHHHHHHHHhc-cceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCChHHHHh---
Q 014922 148 PKPKGQTVGSFRKGLTMLPEAISKRLG-SKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYVASS--- 223 (416)
Q Consensus 148 ~~~~~~~~~~~~gG~~~l~~~L~~~lg-~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~~~~~~--- 223 (416)
....|. .++++||+++|+++|++.+. .+|++|++|++|++++++ |+|++ .+|. +++||+||+|+|+.++++
T Consensus 228 ~~~~g~-~~~i~gG~~~Li~~La~~L~~~~I~ln~~V~~I~~~~~~-v~V~~--~dG~-~~~aD~VIvTvPl~vL~~~~~ 302 (539)
T PLN02568 228 RMFPGE-EITIAKGYLSVIEALASVLPPGTIQLGRKVTRIEWQDEP-VKLHF--ADGS-TMTADHVIVTVSLGVLKAGIG 302 (539)
T ss_pred eecCCC-eEEECCcHHHHHHHHHhhCCCCEEEeCCeEEEEEEeCCe-EEEEE--cCCC-EEEcCEEEEcCCHHHHhhccc
Confidence 011222 57899999999999999995 579999999999998887 88875 4664 789999999999999985
Q ss_pred ----ccCCCCH-HHHhhhcCCCCCCEEEEEEEecCCccccc-cccCCCCCcceEEecCCCC--CceEEEEccCCCCCCC-
Q 014922 224 ----LLRPLSV-DAAGALSQFYYPPVAAVSVSYPKEAIRTE-CLIDGELKGFGQLHPRSQG--VETLGTIYSSSLFPNR- 294 (416)
Q Consensus 224 ----ll~~~~~-~~~~~l~~~~~~~~~~v~l~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~--~~~~~~~~~s~~~~~~- 294 (416)
.|.|.+| ...++++++.+..+.||++.|+++||... .+. ....+.++....+. .......|....+...
T Consensus 303 ~~~i~F~P~LP~~k~~Ai~~l~~g~~~Ki~l~f~~~fW~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (539)
T PLN02568 303 EDSGLFSPPLPDFKTDAISRLGFGVVNKLFVELSPRPDGSPEDVA--KFPFLQMAFHRSDSEARHDKIPWWMRRTASICP 380 (539)
T ss_pred cccceecCCCCHHHHHHHHhcCCceeeEEEEEecCCCCCcccccc--cccceeeeecccchhhhcccccchhhccccccc
Confidence 3666554 46778999999999999999999998531 000 01112222111100 0000001111111100
Q ss_pred CCCCcEEEEEEecCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCC---------------------CCCcEEEEEecCC-
Q 014922 295 APAGRVLLLNYIGGATNLGILSKKESELVEAVDRDLRKMLINPNA---------------------KDPLVLGVRVWQQ- 352 (416)
Q Consensus 295 ~p~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------------------~~~~~~~~~~w~~- 352 (416)
...+..+|.+|+.|..+..+..++++++++.+++.|.+++|.... ..|..+.+++|..
T Consensus 381 ~~~~~~vL~~~~~G~~A~~~e~l~~~~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~t~W~~d 460 (539)
T PLN02568 381 IHKNSSVLLSWFAGKEALELEKLSDEEIIRGVQTTLSSFLKRRVAGLGSQSHPLCNGGASSNDGSRWKFVKVLKSKWGTD 460 (539)
T ss_pred cCCCCCEEEEEeccHHHHHHHcCCHHHHHHHHHHHHHHHcCCcccCcccccccccccccccccccCCCCceEEeCCCCCC
Confidence 012456888899887777788899999999999999999974311 3578889999983
Q ss_pred -----CCCCCCCCHHHHHHHHHHHhhhcCC-------------CCEEEeeccCCCC---chhHHHHHHHHHHHHHHHHhh
Q 014922 353 -----AIPQFLVGHLDLLDAAKSSLRDNGY-------------QGLFLGGNYVAGV---ALGRCVESAYEVASEVSNFLS 411 (416)
Q Consensus 353 -----~~p~~~~g~~~~~~~~~~~l~~~~~-------------~~l~~aG~~~~g~---~~~~ai~sg~~aA~~il~~l~ 411 (416)
+|....||...... ..+.+ |+ ++|||||+.++.. .+++|+.||.+||++|+..++
T Consensus 461 p~~~GsYs~~~~g~~~~~~---~~La~-P~~~~~~~~~~~~~~~~l~FAGEat~~~~~~Tv~GA~~SG~RaA~~i~~~~~ 536 (539)
T PLN02568 461 PLFLGSYSYVAVGSSGDDL---DRMAE-PLPRISDHDQAGGPPLQLLFAGEATHRTHYSTTHGAYFSGLREANRLLQHYK 536 (539)
T ss_pred CccCCccCCCcCCCChhHH---HHHhC-ccccccccccccCCCccEEEeecccCCCccchHHHHHHHHHHHHHHHHHHhc
Confidence 46666677654321 24444 44 3799999887643 378899999999999998753
No 18
>PLN02529 lysine-specific histone demethylase 1
Probab=99.95 E-value=2.8e-26 Score=230.12 Aligned_cols=237 Identities=17% Similarity=0.199 Sum_probs=175.2
Q ss_pred ceeehhhhHhHHHHHHHHHhccceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCChHHHHh--c-cCCC-C
Q 014922 154 TVGSFRKGLTMLPEAISKRLGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYVASS--L-LRPL-S 229 (416)
Q Consensus 154 ~~~~~~gG~~~l~~~L~~~lg~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~~~~~~--l-l~~~-~ 229 (416)
..+.+.||+++|+++|++.+ .|++|++|++|++++++ |+|+ + ++ .++.||+||+|+|+.++++ + |.|. +
T Consensus 348 ~~~~i~GG~~~Li~aLA~~L--~IrLnt~V~~I~~~~dG-VtV~--t-~~-~~~~AD~VIVTVPlgVLk~~~I~F~PpLP 420 (738)
T PLN02529 348 DHCFLAGGNWRLINALCEGV--PIFYGKTVDTIKYGNDG-VEVI--A-GS-QVFQADMVLCTVPLGVLKKRTIRFEPELP 420 (738)
T ss_pred ceEEECCcHHHHHHHHHhcC--CEEcCCceeEEEEcCCe-EEEE--E-CC-EEEEcCEEEECCCHHHHHhccccCCCCCC
Confidence 35789999999999999988 69999999999999887 8886 2 33 3789999999999999984 4 5554 4
Q ss_pred HHHHhhhcCCCCCCEEEEEEEecCCccccccccCCCCCcceEEecCCCCCceEEEEccCCCCCCCCCCCcEEEEEEecCC
Q 014922 230 VDAAGALSQFYYPPVAAVSVSYPKEAIRTECLIDGELKGFGQLHPRSQGVETLGTIYSSSLFPNRAPAGRVLLLNYIGGA 309 (416)
Q Consensus 230 ~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~~p~g~~~l~~~~~~~ 309 (416)
+...++++++.|.++.||++.|+++||+. ....+|++.+........ .+|.+ ...+.+..+|.+|+++.
T Consensus 421 ~~K~~AI~rL~yG~v~KV~L~F~~~FW~~------~~~~fG~l~~~~~~~g~~-~~~~~----~~~~~ggpvLvafv~G~ 489 (738)
T PLN02529 421 RRKLAAIDRLGFGLLNKVAMVFPSVFWGE------ELDTFGCLNESSNKRGEF-FLFYG----YHTVSGGPALVALVAGE 489 (738)
T ss_pred HHHHHHHHcCCCceeEEEEEEeCCccccC------CCCceEEEeccCCCCceE-EEEec----CCCCCCCCEEEEEECch
Confidence 45678899999999999999999999974 223466654322221111 22222 11122345788999888
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHhCCC--CCCCCcEEEEEecCC------CCCCCCCCHHHHHHHHHHHhhhcC-CCCE
Q 014922 310 TNLGILSKKESELVEAVDRDLRKMLINP--NAKDPLVLGVRVWQQ------AIPQFLVGHLDLLDAAKSSLRDNG-YQGL 380 (416)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~w~~------~~p~~~~g~~~~~~~~~~~l~~~~-~~~l 380 (416)
.+..+..++++++++.+++.|.+++|.. ...+|..+.+++|.. +|....+|..... + ..+.+ | .++|
T Consensus 490 ~A~~le~lsdeeii~~vl~~L~~ifgp~~~~vp~Pi~~v~t~W~~DP~s~GsYS~~~~g~~~~d--~-~~La~-pv~grL 565 (738)
T PLN02529 490 AAQRFENTDPSTLLHRVLSVLRGIYNPKGINVPDPIQTICTRWGSDPLSYGSYSHVRVQSSGSD--Y-DILAE-SVSGRL 565 (738)
T ss_pred hhHHHhcCCHHHHHHHHHHHHHHHhCccccccCCceEEEEccCCcCCCCCCCcccCCCCCchhH--H-HHHhC-CCCCCE
Confidence 7777888999999999999999999732 124678899999984 3444455432211 1 23444 4 4799
Q ss_pred EEeeccCCC---CchhHHHHHHHHHHHHHHHHhhh
Q 014922 381 FLGGNYVAG---VALGRCVESAYEVASEVSNFLSQ 412 (416)
Q Consensus 381 ~~aG~~~~g---~~~~~ai~sg~~aA~~il~~l~~ 412 (416)
||||+++.. .++++|+.||.+||++|+..+.+
T Consensus 566 ~FAGEaTs~~~pgtVeGAi~SG~RAA~eIl~~l~~ 600 (738)
T PLN02529 566 FFAGEATTRQYPATMHGAFLSGLREASRILHVARS 600 (738)
T ss_pred EEEEHHHhCCCCeEeHHHHHHHHHHHHHHHHHHhh
Confidence 999998864 36889999999999999987754
No 19
>PLN02976 amine oxidase
Probab=99.94 E-value=1.5e-25 Score=231.21 Aligned_cols=239 Identities=17% Similarity=0.250 Sum_probs=179.1
Q ss_pred ceeehhhhHhHHHHHHHHHhccceecCceeeeEEEc----------CCCceEEEEeCCCCceEEecCEEEEcCChHHHH-
Q 014922 154 TVGSFRKGLTMLPEAISKRLGSKVKLSWKLSGVKKL----------DSGEYSLTYETPEGLVSLRSRSVVMTVPSYVAS- 222 (416)
Q Consensus 154 ~~~~~~gG~~~l~~~L~~~lg~~I~l~~~V~~I~~~----------~~~~v~v~~~~~~g~~~~~ad~VI~a~p~~~~~- 222 (416)
..+.++||+++|+++|++.+ .|+||++|++|++. +++ |+|+ +.+|. +++||+||+|+|+.++.
T Consensus 927 ~~~rIkGGYqqLIeALAe~L--~IrLNtpVtrId~s~~d~~~~~s~~dG-VtVt--TsDGe-tftADaVIVTVPLGVLKa 1000 (1713)
T PLN02976 927 AHCMIKGGYSNVVESLAEGL--DIHLNHVVTDVSYGSKDAGASGSSRKK-VKVS--TSNGS-EFLGDAVLITVPLGCLKA 1000 (1713)
T ss_pred ceEEeCCCHHHHHHHHHhhC--CeecCCeEEEEEecCCcccccccCCCc-EEEE--ECCCC-EEEeceEEEeCCHHHhhh
Confidence 35679999999999999998 69999999999985 244 8776 46774 79999999999999997
Q ss_pred -hc-cCCCCHH-HHhhhcCCCCCCEEEEEEEecCCccccccccCCCCCcceEEecCCCCCceEEEEccCCCCCCCCCCCc
Q 014922 223 -SL-LRPLSVD-AAGALSQFYYPPVAAVSVSYPKEAIRTECLIDGELKGFGQLHPRSQGVETLGTIYSSSLFPNRAPAGR 299 (416)
Q Consensus 223 -~l-l~~~~~~-~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~~p~g~ 299 (416)
.+ |.|.+|. ...++.++.++.+.||++.|+++||+. +..++|...... ...+.+|. .|+...+.+.
T Consensus 1001 g~I~FsPPLPe~KqaAIqrLgfG~lnKV~LeFdrpFW~~------d~d~FG~s~edt---dlrG~~~~--~wnlr~psG~ 1069 (1713)
T PLN02976 1001 ETIKFSPPLPDWKYSSIQRLGFGVLNKVVLEFPEVFWDD------SVDYFGATAEET---DLRGQCFM--FWNVKKTVGA 1069 (1713)
T ss_pred cccccCCcccHHHHHHHHhhccccceEEEEEeCCccccC------CCCccccccccC---CCCceEEE--eccCCCCCCC
Confidence 34 7666664 456789999999999999999999974 234455332111 11222222 2444444455
Q ss_pred EEEEEEecCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCCCcEEEEEecCC------CCCCCCCCHHHHHHHHHHHhh
Q 014922 300 VLLLNYIGGATNLGILSKKESELVEAVDRDLRKMLINPNAKDPLVLGVRVWQQ------AIPQFLVGHLDLLDAAKSSLR 373 (416)
Q Consensus 300 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~w~~------~~p~~~~g~~~~~~~~~~~l~ 373 (416)
.+|.+|+.|..+..+..++++++++.+++.|.++||......|..+.+++|.. +|.++.||...... ..+.
T Consensus 1070 pVLVafv~G~aAreiEsLSDEE~Ve~ALe~LrKlFG~~~iPdPv~~vvTrWssDPySrGSYSy~~PGs~~~d~---d~LA 1146 (1713)
T PLN02976 1070 PVLIALVVGKAAIDGQSMSSSDHVNHALMVLRKLFGEALVPDPVASVVTDWGRDPFSYGAYSYVAIGASGEDY---DILG 1146 (1713)
T ss_pred CEEEEEeccHhHHHHhhCCHHHHHHHHHHHHHHHcCcccccCcceeEEecCCCCCCcCccccCCCCCCCchHH---HHHh
Confidence 67888887776666778899999999999999999854335788999999973 46666778644322 2556
Q ss_pred hcCCCC-EEEeeccCC---CCchhHHHHHHHHHHHHHHHHhhhc
Q 014922 374 DNGYQG-LFLGGNYVA---GVALGRCVESAYEVASEVSNFLSQY 413 (416)
Q Consensus 374 ~~~~~~-l~~aG~~~~---g~~~~~ai~sg~~aA~~il~~l~~~ 413 (416)
+ |+++ |||||+++. ..++++|+.||.+||++|+..+.+.
T Consensus 1147 e-PVggRLFFAGEATS~~~pGTVHGAIeSG~RAA~eIL~~L~~G 1189 (1713)
T PLN02976 1147 R-PVENCLFFAGEATCKEHPDTVGGAMMSGLREAVRIIDILNTG 1189 (1713)
T ss_pred C-CCCCcEEEEehhhhCCCcchHHHHHHHHHHHHHHHHHHHHcc
Confidence 6 7755 999998764 2468899999999999999888543
No 20
>PLN02676 polyamine oxidase
Probab=99.94 E-value=2.3e-25 Score=217.99 Aligned_cols=235 Identities=15% Similarity=0.193 Sum_probs=174.2
Q ss_pred hhhHhHHHHHHHHHh---------ccceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCChHHHHh--c-cC
Q 014922 159 RKGLTMLPEAISKRL---------GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYVASS--L-LR 226 (416)
Q Consensus 159 ~gG~~~l~~~L~~~l---------g~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~~~~~~--l-l~ 226 (416)
+||+++|+++|++.+ +++|+||++|++|++++++ |+|++ .+|+ +++||+||+|+|+.++.+ + +.
T Consensus 220 ~~G~~~l~~~La~~~~~~~~~~~~~~~I~l~~~V~~I~~~~~g-V~V~~--~~G~-~~~a~~VIvtvPl~vLk~~~I~F~ 295 (487)
T PLN02676 220 PRGYESLVYYLAEQFLSTKSGKITDPRLKLNKVVREISYSKNG-VTVKT--EDGS-VYRAKYVIVSVSLGVLQSDLIKFK 295 (487)
T ss_pred CCCHHHHHHHHHhhcccccccccCCCceecCCEeeEEEEcCCc-EEEEE--CCCC-EEEeCEEEEccChHHhccCceEEe
Confidence 689999999999987 2579999999999999887 88874 5674 899999999999999986 4 66
Q ss_pred CCCHH-HHhhhcCCCCCCEEEEEEEecCCccccccccCCCCCcceEEecCCCCCceEEEEccCCCCCCCCCCCcEEEEEE
Q 014922 227 PLSVD-AAGALSQFYYPPVAAVSVSYPKEAIRTECLIDGELKGFGQLHPRSQGVETLGTIYSSSLFPNRAPAGRVLLLNY 305 (416)
Q Consensus 227 ~~~~~-~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~~p~g~~~l~~~ 305 (416)
|.+|. .+++++++.+..+.||.+.|+++||++. .....++.+... ... ..+|.. ++...| +..++.++
T Consensus 296 P~LP~~k~~ai~~l~~g~~~Kv~l~f~~~FW~~~------~~~~~~~~~~~~-~~~-~~~~~~--~~~~~~-~~~~l~~~ 364 (487)
T PLN02676 296 PPLPDWKIEAIYQFDMAVYTKIFLKFPYKFWPSG------PGTEFFLYAHER-RGY-YPFWQH--LENEYP-GSNVLFVT 364 (487)
T ss_pred CCCCHHHHHHHHhCCceeeEEEEEEeCCCCCCCC------CCceeeeeeccc-ccc-chhhhh--cccCCC-CCCEEEEE
Confidence 65554 5678889999999999999999999741 111122221111 000 011111 111223 33567777
Q ss_pred ecCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCCCcEEEEEecCC------CCCCCCCCHHHHHHHHHHHhhhcCCCC
Q 014922 306 IGGATNLGILSKKESELVEAVDRDLRKMLINPNAKDPLVLGVRVWQQ------AIPQFLVGHLDLLDAAKSSLRDNGYQG 379 (416)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~w~~------~~p~~~~g~~~~~~~~~~~l~~~~~~~ 379 (416)
+.+..+..+..++++++.+.+++.|++++|. ....|..+..++|.. +|..+.||+..... +.+++ |+++
T Consensus 365 ~~g~~a~~~~~~s~e~~~~~vl~~L~~~~g~-~~~~p~~~~~~~W~~dp~s~Gsys~~~pG~~~~~~---~~L~~-P~gr 439 (487)
T PLN02676 365 VTDEESRRIEQQPDSETKAEIMEVLRKMFGP-NIPEATDILVPRWWSNRFFKGSYSNWPIGVSRYEF---DQIRA-PVGR 439 (487)
T ss_pred echHHHHHHHhCCHHHHHHHHHHHHHHHhCC-CCCCcceEEecccCCCCCCCcccCCCCCCCChhHH---HHHhC-CCCc
Confidence 7666555677789999999999999999984 345788889999973 46777888755433 25676 8899
Q ss_pred EEEeeccCCC---CchhHHHHHHHHHHHHHHHHhhhc
Q 014922 380 LFLGGNYVAG---VALGRCVESAYEVASEVSNFLSQY 413 (416)
Q Consensus 380 l~~aG~~~~g---~~~~~ai~sg~~aA~~il~~l~~~ 413 (416)
|||||++++. .++++|+.||++||++|+..+.+.
T Consensus 440 i~FAGe~ts~~~~g~~eGA~~SG~RaA~~I~~~l~~~ 476 (487)
T PLN02676 440 VYFTGEHTSEKYNGYVHGAYLAGIDTANDLLECIKKK 476 (487)
T ss_pred eEEeccccccccccchHHHHHHHHHHHHHHHHHhccC
Confidence 9999988753 458899999999999999987654
No 21
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=99.94 E-value=3.4e-25 Score=204.21 Aligned_cols=237 Identities=21% Similarity=0.246 Sum_probs=180.3
Q ss_pred ceeehhhhHhHHHHHHHHHhccceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCChHHHHhc-cCC-CCHH
Q 014922 154 TVGSFRKGLTMLPEAISKRLGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYVASSL-LRP-LSVD 231 (416)
Q Consensus 154 ~~~~~~gG~~~l~~~L~~~lg~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~~~~~~l-l~~-~~~~ 231 (416)
..+...|||+.|+++++++|+..|+++++|++|.++++| |+|++ .+. .++.+|.||||+|+.++.+| |.| .+++
T Consensus 200 ~~~~~~GGmd~la~Afa~ql~~~I~~~~~V~rI~q~~~g-V~Vt~--~~~-~~~~ad~~i~tiPl~~l~qI~f~P~l~~~ 275 (450)
T COG1231 200 QMLQRLGGMDQLAEAFAKQLGTRILLNEPVRRIDQDGDG-VTVTA--DDV-GQYVADYVLVTIPLAILGQIDFAPLLPAE 275 (450)
T ss_pred hhhccCccHHHHHHHHHHHhhceEEecCceeeEEEcCCe-EEEEe--CCc-ceEEecEEEEecCHHHHhhcccCCCCCHH
Confidence 345555999999999999999999999999999999998 99985 442 27899999999999999999 777 4567
Q ss_pred HHhhhcCCCCCCEEEEEEEecCCccccccccCCCCCcceEEecCCCCCceEEEEccCCCCCCCCCCCcEEEEE-EecCCC
Q 014922 232 AAGALSQFYYPPVAAVSVSYPKEAIRTECLIDGELKGFGQLHPRSQGVETLGTIYSSSLFPNRAPAGRVLLLN-YIGGAT 310 (416)
Q Consensus 232 ~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~~p~g~~~l~~-~~~~~~ 310 (416)
.++++..+.|.+..|+.+.|+++||++++ .+.|.++. +.. ...+.++|+ +.. +|..+|.. |.-+..
T Consensus 276 ~~~a~~~~~y~~~~K~~v~f~rpFWee~~----~l~G~~~t--D~~---~~~i~~~s~--~~~--~G~gVl~g~~~~g~~ 342 (450)
T COG1231 276 YKQAAKGVPYGSATKIGVAFSRPFWEEAG----ILGGESLT--DLG---LGFISYPSA--PFA--DGPGVLLGSYAFGDD 342 (450)
T ss_pred HHHHhcCcCcchheeeeeecCchhhhhcc----cCCceEee--cCC---cceEecCcc--ccC--CCceEEEeeeecccc
Confidence 78888999999999999999999999762 14444432 211 122333343 111 35556654 554666
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHhCCCCCCCCcEE-EEEecCC------CCCCCCCCHHHHHHHHHHHhhhcCCCCEEEe
Q 014922 311 NLGILSKKESELVEAVDRDLRKMLINPNAKDPLVL-GVRVWQQ------AIPQFLVGHLDLLDAAKSSLRDNGYQGLFLG 383 (416)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~w~~------~~p~~~~g~~~~~~~~~~~l~~~~~~~l~~a 383 (416)
+..|..++++++.+.++..+++++|... .++.+. ...+|.. ++..+.+|......+ .+.. |.++||||
T Consensus 343 A~~~~~~~~~~r~~~vl~~l~~~~g~~a-~~~f~~~~~~~W~~dpwt~G~~aa~~~g~~~~~~~---~l~~-p~gRIh~A 417 (450)
T COG1231 343 ALVIDALPEAERRQKVLARLAKLFGDEA-ADPFDYGASVDWSKDPWTLGGTAAYPPGQRTKLYP---TLPA-PHGRIHFA 417 (450)
T ss_pred ceeEecCCHHHHHHHHHHhHhhhCChhh-ccccccceeeecccCCcCCccccccCCcccccccc---cccC-CCCceEEe
Confidence 7778899999999999999999998543 345444 6777773 256677776655443 5666 78999999
Q ss_pred ec-cC--CCCchhHHHHHHHHHHHHHHHHhhh
Q 014922 384 GN-YV--AGVALGRCVESAYEVASEVSNFLSQ 412 (416)
Q Consensus 384 G~-~~--~g~~~~~ai~sg~~aA~~il~~l~~ 412 (416)
|+ +. .+.|+++||+||.+||.+|+..+.+
T Consensus 418 gtEhas~~~Gw~eGAi~Sg~~AA~ei~~~l~s 449 (450)
T COG1231 418 GTEHASEFGGWLEGAIRSGQRAAAEIHALLSS 449 (450)
T ss_pred eecccccccchhHHHHHHHHHHHHHHHHhhcC
Confidence 94 33 3678999999999999999987754
No 22
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=99.92 E-value=1.7e-24 Score=211.70 Aligned_cols=300 Identities=22% Similarity=0.326 Sum_probs=199.6
Q ss_pred CCCcHHHHHHHhhC-HHHHHHhhhhhhcccccCCcchhhHHHhhHHHHHHHHhcCChHHHHHHHHHhhccCCCCCCCCCC
Q 014922 69 HEESVEEFVRRNLG-DEVFERLIEPFCSGVYAGDPSKLSMKAAFGKVWKLEQTGGSIIGGTFKAIQEKNKAPKQPRDPRL 147 (416)
Q Consensus 69 ~~~s~~~~l~~~~g-~~~~~~~~~p~~~~~~~~~~~~lS~~~~~~~~~~~~~~~gs~~~~~~~~~~~~~~~~~~~~~~~~ 147 (416)
...++.+|+..... ....+.++.++....++..+...++......+.... .......
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~----------------- 198 (450)
T PF01593_consen 141 DLESFLEFLDSQSFSEIFRESLFRPFFFGAFGFLPDESSAALALLSFPHFD-----LQDNGGY----------------- 198 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTHHHHHHHHHHCH-----HHHHHHH-----------------
T ss_pred hhhhhhhhhhhhhhhhhhHHHHHHhhhhhhhccccchhhhhHHHhhhhhcc-----ccccccc-----------------
Confidence 34566676655333 333333566666666666777777663333332110 0000000
Q ss_pred CCCCCCceeehhhhHhHHHHHHHHHhccceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCChHHHHh-ccC
Q 014922 148 PKPKGQTVGSFRKGLTMLPEAISKRLGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYVASS-LLR 226 (416)
Q Consensus 148 ~~~~~~~~~~~~gG~~~l~~~L~~~lg~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~~~~~~-ll~ 226 (416)
..........|++..+...+.+.++++|++|++|++|+.++++ |+|++ .+|. +++||+||+|+|+..+.+ .+.
T Consensus 199 --~~~~~~~~~~g~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~-v~v~~--~~g~-~~~ad~VI~a~p~~~l~~i~~~ 272 (450)
T PF01593_consen 199 --FPFGGLTVGMGGLSLALALAAEELGGEIRLNTPVTRIEREDGG-VTVTT--EDGE-TIEADAVISAVPPSVLKNILLL 272 (450)
T ss_dssp --TTSSTEEEETTTTHHHHHHHHHHHGGGEESSEEEEEEEEESSE-EEEEE--TTSS-EEEESEEEE-S-HHHHHTSEEE
T ss_pred --ccccceeecccchhHHHHHHHhhcCceeecCCcceeccccccc-ccccc--ccce-EEecceeeecCchhhhhhhhhc
Confidence 0112234556777777777777788899999999999999987 88875 5664 899999999999999997 454
Q ss_pred CCCH-HHHhhhcCCCCCCEEEEEEEecCCccccccccCCCCCcceEEecCCCCCceEEEEccCCCCCCCCCCCcEEEEEE
Q 014922 227 PLSV-DAAGALSQFYYPPVAAVSVSYPKEAIRTECLIDGELKGFGQLHPRSQGVETLGTIYSSSLFPNRAPAGRVLLLNY 305 (416)
Q Consensus 227 ~~~~-~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~~p~g~~~l~~~ 305 (416)
+..+ ...++++++.|.++.+|++.|++++|.. +...++++.++. .....++++++..+.. ++...+..+
T Consensus 273 p~l~~~~~~a~~~~~~~~~~~v~l~~~~~~~~~------~~~~~~~~~~~~--~~~~~~~~~~~~~~~~--~~~~~l~~~ 342 (450)
T PF01593_consen 273 PPLPEDKRRAIENLPYSSVSKVFLGFDRPFWPP------DIDFFGILYSDG--FSPIGYVSDPSKFPGR--PGGGVLTSY 342 (450)
T ss_dssp STSHHHHHHHHHTEEEEEEEEEEEEESSGGGGS------TTTESEEEEESS--TSSEEEEEEECCTTSC--TTSEEEEEE
T ss_pred ccccccccccccccccCcceeEEEeeecccccc------cccccceecccC--ccccccccccccCccc--ccCCcceee
Confidence 4445 4667888999999999999999999974 223456665443 2334455555544433 345677777
Q ss_pred ecCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCCCcEEEEEecCC-CCCCCCCCHHHHH--HHHHHHhhhcCC-CCEE
Q 014922 306 IGGATNLGILSKKESELVEAVDRDLRKMLINPNAKDPLVLGVRVWQQ-AIPQFLVGHLDLL--DAAKSSLRDNGY-QGLF 381 (416)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~w~~-~~p~~~~g~~~~~--~~~~~~l~~~~~-~~l~ 381 (416)
+.+.....+..++++++.+.++++|+++++.....+|..+.+++|.. .++....++.... ...++.+.+ |+ +|||
T Consensus 343 ~~~~~~~~~~~~~~e~~~~~~~~~L~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~ 421 (450)
T PF01593_consen 343 VGGPDAPEWDDLSDEEILERVLDDLRKILPGASIPDPIDITVTRWSRDPYPRGSYSYFPPGQSSQFRPALRT-PIDPGLY 421 (450)
T ss_dssp EEHHHHHHHTTSCHHHHHHHHHHHHHHHHTTGGGGEESEEEEEECTTSTTTSSSCECHCTTHHHHHHHHHHS-CBTTTEE
T ss_pred eeccccchhcccchhhhHHHHHHHhhhccccccccccccccccccccccccccccccccccccccccccccC-CcceEEE
Confidence 76554345678899999999999999999842234667888999996 4444433222211 224456666 77 6999
Q ss_pred EeeccCCCC---chhHHHHHHHHHHHHHH
Q 014922 382 LGGNYVAGV---ALGRCVESAYEVASEVS 407 (416)
Q Consensus 382 ~aG~~~~g~---~~~~ai~sg~~aA~~il 407 (416)
|||+|+++. ++++|+.||++||++||
T Consensus 422 ~aG~~~~~~~~~~~~gA~~sG~~aA~~il 450 (450)
T PF01593_consen 422 FAGDWTSPGYPGGIEGAILSGRRAAEEIL 450 (450)
T ss_dssp E-SGGGSSSSTTSHHHHHHHHHHHHHHHH
T ss_pred EeecccCCCCCCcHHHHHHHHHHHHHHhC
Confidence 999999854 89999999999999986
No 23
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=99.82 E-value=7.5e-19 Score=174.13 Aligned_cols=297 Identities=15% Similarity=0.120 Sum_probs=176.8
Q ss_pred CCCcHHHHHHHh--hCHHHHHHhhhhhhcccccCCcchhhHHHhhHHHHHHHHhcCChHHHHHHHHHhhccCCCCCCCCC
Q 014922 69 HEESVEEFVRRN--LGDEVFERLIEPFCSGVYAGDPSKLSMKAAFGKVWKLEQTGGSIIGGTFKAIQEKNKAPKQPRDPR 146 (416)
Q Consensus 69 ~~~s~~~~l~~~--~g~~~~~~~~~p~~~~~~~~~~~~lS~~~~~~~~~~~~~~~gs~~~~~~~~~~~~~~~~~~~~~~~ 146 (416)
...|+.+|+++. +..+.++.++...+....+.++++.++...+..+....
T Consensus 168 ~~~s~~~~l~~~~~~~~~~lr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------- 219 (492)
T TIGR02733 168 SLLTVADLLRLCGLGDDRRLRRFLDLQLKLYSQEDADETAALYGATVLQMAQ---------------------------- 219 (492)
T ss_pred hhhhHHHHHHHhCCCccHHHHHHHHHHHhhhccCChhhhhHHHHHHHhhccc----------------------------
Confidence 468999999886 56777888887655333455676777654322221000
Q ss_pred CCCCCCCceeehhhhHhHHHHHHHHHh---ccceecCceeeeEEEcCCCceEEEEeCC-CC-ceEEecCEEEEcCChHHH
Q 014922 147 LPKPKGQTVGSFRKGLTMLPEAISKRL---GSKVKLSWKLSGVKKLDSGEYSLTYETP-EG-LVSLRSRSVVMTVPSYVA 221 (416)
Q Consensus 147 ~~~~~~~~~~~~~gG~~~l~~~L~~~l---g~~I~l~~~V~~I~~~~~~~v~v~~~~~-~g-~~~~~ad~VI~a~p~~~~ 221 (416)
.....++++||+++|+++|++.+ |++|+++++|++|..++++...|.+.+. +| .+++.||+||+|+|+..+
T Consensus 220 ----~~~G~~~~~GG~~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~~~ 295 (492)
T TIGR02733 220 ----APHGLWHLHGSMQTLSDRLVEALKRDGGNLLTGQRVTAIHTKGGRAGWVVVVDSRKQEDLNVKADDVVANLPPQSL 295 (492)
T ss_pred ----cCCCceeecCcHHHHHHHHHHHHHhcCCEEeCCceEEEEEEeCCeEEEEEEecCCCCceEEEECCEEEECCCHHHH
Confidence 00124789999999999999998 6899999999999988764122322111 11 137899999999999999
Q ss_pred HhccCC--CCHHHHhhhcCCCCCC-EEEEEEEecCCccccccccCCCCCcceEEecCCCCCceEEEEccCCCCCCCCCCC
Q 014922 222 SSLLRP--LSVDAAGALSQFYYPP-VAAVSVSYPKEAIRTECLIDGELKGFGQLHPRSQGVETLGTIYSSSLFPNRAPAG 298 (416)
Q Consensus 222 ~~ll~~--~~~~~~~~l~~~~~~~-~~~v~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~~p~g 298 (416)
.+++++ .++...+.++++++++ ..++++++++...+.. ....+.++... .. . .-+.. ++..|..+|+|
T Consensus 296 ~~ll~~~~~~~~~~~~~~~~~~s~~~~~v~l~~~~~~~~~~-----~~~~~~~~~~~-~~-~-~~v~~-~~~d~~~aP~G 366 (492)
T TIGR02733 296 LELLGPLGLPPGYRKRLKKLPEPSGAFVFYLGVKRAALPVD-----CPPHLQFLSDH-QG-S-LFVSI-SQEGDGRAPQG 366 (492)
T ss_pred HHhcCcccCCHHHHHHHhcCCCCCceEEEEEeecccccCCC-----CCcceeeccCC-Cc-e-EEEEe-CCccccCCCCC
Confidence 988764 2345666788888874 6689999987421110 00112222211 11 1 11111 33346678989
Q ss_pred cEEEEEEecCCCCCCCCC-------CCHHHHHHHHHHHHHHHhCCCCCCCCcEEEEE---ecC---CC--CCCCCCCHH-
Q 014922 299 RVLLLNYIGGATNLGILS-------KKESELVEAVDRDLRKMLINPNAKDPLVLGVR---VWQ---QA--IPQFLVGHL- 362 (416)
Q Consensus 299 ~~~l~~~~~~~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---~w~---~~--~p~~~~g~~- 362 (416)
++.+++++..... .|.. ...+++.+.+++.|++++|... ..+....+. .|. +. -..|...+.
T Consensus 367 ~~~l~~~~~~~~~-~~~~~~~~~y~~~k~~~~~~il~~le~~~p~l~-~~i~~~~v~TP~t~~~~~~~~~G~~~G~~~~~ 444 (492)
T TIGR02733 367 EATLIASSFTDTN-DWSSLDEEDYTAKKKQYTQTIIERLGHYFDLLE-ENWVHVELATPRTFERWTGRPQGIVGGLGQRP 444 (492)
T ss_pred ceEEEEEcCCCHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHCCCcc-ccEEEEEccCCchHHHHhCCCCcEECCCCcCc
Confidence 8887655432211 1111 1235688889999999876432 222221111 111 10 011111110
Q ss_pred HHHHHHHHHhhhcCCCCEEEeeccCC-CCchhHHHHHHHHHHHHHHHH
Q 014922 363 DLLDAAKSSLRDNGYQGLFLGGNYVA-GVALGRCVESAYEVASEVSNF 409 (416)
Q Consensus 363 ~~~~~~~~~l~~~~~~~l~~aG~~~~-g~~~~~ai~sg~~aA~~il~~ 409 (416)
.....++...++ +++|||+||++++ |.|+++++.||+.+|++|++.
T Consensus 445 ~q~~~~~~~~~t-~i~gLyl~G~~~~pG~Gv~g~~~sg~~~a~~i~~~ 491 (492)
T TIGR02733 445 STFGPFGLSSRT-PVKGLWLCGDSIHPGEGTAGVSYSALMVVRQILAS 491 (492)
T ss_pred cccCCcCCCCCC-CCCCeEEecCccCCCCcHHHHHHHHHHHHHHHhhc
Confidence 000011111234 7899999999886 679999999999999999853
No 24
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=99.82 E-value=6e-19 Score=162.97 Aligned_cols=239 Identities=17% Similarity=0.247 Sum_probs=174.3
Q ss_pred eehhhhHhHHHHHHHHHhc---------cceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCChHHHHh---
Q 014922 156 GSFRKGLTMLPEAISKRLG---------SKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYVASS--- 223 (416)
Q Consensus 156 ~~~~gG~~~l~~~L~~~lg---------~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~~~~~~--- 223 (416)
...+-|+..+.+-|++.+. ++|+++++|.+|+..+.+.|.|++ .||+ .+.||+||||++..++++
T Consensus 216 ~~~~kGy~~iL~~l~~~~p~~~i~~~~~~~~~~~~rv~~I~~~~~~~v~l~c--~dg~-v~~adhVIvTvsLGvLk~~h~ 292 (498)
T KOG0685|consen 216 IWNKKGYKRILKLLMAVIPAQNIELGLWKRIHLNTRVENINWKNTGEVKLRC--SDGE-VFHADHVIVTVSLGVLKEQHH 292 (498)
T ss_pred eechhHHHHHHHHHhccCCCcchhcCchhhhcccccceeeccCCCCcEEEEE--eCCc-EEeccEEEEEeechhhhhhhh
Confidence 4667889999999998763 367777999999998655588887 4785 899999999999999987
Q ss_pred -ccCCCCH-HHHhhhcCCCCCCEEEEEEEecCCccccccccCCCCCcceEEecCCCC-----------C-ceEEEEccCC
Q 014922 224 -LLRPLSV-DAAGALSQFYYPPVAAVSVSYPKEAIRTECLIDGELKGFGQLHPRSQG-----------V-ETLGTIYSSS 289 (416)
Q Consensus 224 -ll~~~~~-~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----------~-~~~~~~~~s~ 289 (416)
+|.|++| ...++++++.++.+.|++|-|.+|+|.. ++.++..+. .+++ . .+ +.|...
T Consensus 293 ~lF~P~LP~~K~~AIe~lgfGtv~KiFLE~E~pfwp~------~~~~i~~lw-~~e~l~e~r~~~~~w~~~~--~~f~~v 363 (498)
T KOG0685|consen 293 KLFVPPLPAEKQRAIERLGFGTVNKIFLEFEEPFWPS------DWNGIQLLW-LDEDLEELRSTLDAWEEDI--MGFQPV 363 (498)
T ss_pred hhcCCCCCHHHHHHHHhccCCccceEEEEccCCCCCC------CCceeEEEE-ecCcHHHHhhhhHHHHhhc--eEEEEc
Confidence 7777655 5678999999999999999999999974 455554432 2332 0 11 111111
Q ss_pred CCCCCCCCCcEEEEEEecCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCCCcEEEEEecCC------CCCCCCCCHHH
Q 014922 290 LFPNRAPAGRVLLLNYIGGATNLGILSKKESELVEAVDRDLRKMLINPNAKDPLVLGVRVWQQ------AIPQFLVGHLD 363 (416)
Q Consensus 290 ~~~~~~p~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~w~~------~~p~~~~g~~~ 363 (416)
.| + ..+|.+++.|..+..+..++|+++.+.+...|.++++......|..+..+.|.. +|.+..+|...
T Consensus 364 ~~---~---~~vL~gWiaG~~~~~me~lsdEev~e~~~~~lr~fl~n~~iP~p~kilRs~W~snp~frGSYSY~svgs~~ 437 (498)
T KOG0685|consen 364 SW---A---PNVLLGWIAGREARHMETLSDEEVLEGLTKLLRKFLKNPEIPKPKKILRSQWISNPFFRGSYSYRSVGSDG 437 (498)
T ss_pred Cc---c---hhhhheeccCCcceehhhCCHHHHHHHHHHHHHHhcCCCCCCCchhhhhhcccCCCccCceeeEeeccccc
Confidence 11 1 258899999888888999999999999999999999866667888888888873 35555554321
Q ss_pred ----HHHHHHH-HhhhcCCCCEEEeeccCCC---CchhHHHHHHHHHHHHHHHHhhhc
Q 014922 364 ----LLDAAKS-SLRDNGYQGLFLGGNYVAG---VALGRCVESAYEVASEVSNFLSQY 413 (416)
Q Consensus 364 ----~~~~~~~-~l~~~~~~~l~~aG~~~~g---~~~~~ai~sg~~aA~~il~~l~~~ 413 (416)
..+...+ .... .-+.|.|||..++. ..+.+|++||.|.|++++..+++.
T Consensus 438 ~d~~~~a~p~p~~~~~-~~p~I~FAGEaThr~~YsTthGA~~SG~REA~RL~~~y~~~ 494 (498)
T KOG0685|consen 438 SDTGALALPLPLTLVT-GRPQILFAGEATHRTFYSTTHGAVLSGWREADRLLEHYESS 494 (498)
T ss_pred cccchhhccCCccccC-CCceEEEccccccccceehhhhhHHhhHHHHHHHHHHHHhh
Confidence 1111111 1111 23579999987763 457889999999999999876554
No 25
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=99.81 E-value=2.8e-20 Score=159.14 Aligned_cols=227 Identities=20% Similarity=0.267 Sum_probs=168.3
Q ss_pred eehhhhHhHHHHHHHHHhccceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCChHHHHhccCC----CCHH
Q 014922 156 GSFRKGLTMLPEAISKRLGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYVASSLLRP----LSVD 231 (416)
Q Consensus 156 ~~~~gG~~~l~~~L~~~lg~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~~~~~~ll~~----~~~~ 231 (416)
|.-.-||.+|++.|+..| +|.++++|++|...++. |++.. ++|.....+|.||+|+|++++..||.+ .+.+
T Consensus 101 yvg~pgmsalak~LAtdL--~V~~~~rVt~v~~~~~~-W~l~~--~~g~~~~~~d~vvla~PAPQ~~~LLt~~~~~~p~~ 175 (331)
T COG3380 101 YVGEPGMSALAKFLATDL--TVVLETRVTEVARTDND-WTLHT--DDGTRHTQFDDVVLAIPAPQTATLLTTDADDLPAA 175 (331)
T ss_pred cccCcchHHHHHHHhccc--hhhhhhhhhhheecCCe-eEEEe--cCCCcccccceEEEecCCCcchhhcCcccccchHH
Confidence 566789999999999988 99999999999999776 99984 455457899999999999999999854 2345
Q ss_pred HHhhhcCCCCCCEEEEEEEecCCccccccccCCCCCcceEEecCCCCCceEEEEccCCCCCCCCCCCcEEEEEEecCCCC
Q 014922 232 AAGALSQFYYPPVAAVSVSYPKEAIRTECLIDGELKGFGQLHPRSQGVETLGTIYSSSLFPNRAPAGRVLLLNYIGGATN 311 (416)
Q Consensus 232 ~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~~p~g~~~l~~~~~~~~~ 311 (416)
++..+..+.|.++..+.++|..+.-. ++.| ..+ +. ..++++--+++.++..|.+. .+.+-.+..++
T Consensus 176 l~~~~a~V~y~Pc~s~~lg~~q~l~~-------P~~G--~~v-dg---~~laWla~d~sK~g~~p~~~-~~vvqasp~wS 241 (331)
T COG3380 176 LRAALADVVYAPCWSAVLGYPQPLDR-------PWPG--NFV-DG---HPLAWLARDASKKGHVPDGE-IWVVQASPDWS 241 (331)
T ss_pred HHHhhccceehhHHHHHhcCCccCCC-------CCCC--ccc-CC---CeeeeeeccccCCCCCCcCc-eEEEEeCchHH
Confidence 88899999999999999999976422 3333 122 22 12444433434566777776 44444444455
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHHhhhcCCCCEEEeeccCCCCc
Q 014922 312 LGILSKKESELVEAVDRDLRKMLINPNAKDPLVLGVRVWQQAIPQFLVGHLDLLDAAKSSLRDNGYQGLFLGGNYVAGVA 391 (416)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~w~~~~p~~~~g~~~~~~~~~~~l~~~~~~~l~~aG~~~~g~~ 391 (416)
+...+.++++.+..+....+...+. ...+|.....++|+++.|.-..+...... . +-.+||+||||+.|.-
T Consensus 242 r~h~~~~~e~~i~~l~aA~~~~~~~-~~~~p~~s~~H~WrYA~P~~~~~~~~L~a-------d-~~~~l~~cGDwc~Ggr 312 (331)
T COG3380 242 REHLDHPAEQVIVALRAAAQELDGD-RLPEPDWSDAHRWRYAIPNDAVAGPPLDA-------D-RELPLYACGDWCAGGR 312 (331)
T ss_pred HHhhcCCHHHHHHHHHHhhhhccCC-CCCcchHHHhhccccccccccccCCcccc-------C-CCCceeeecccccCcc
Confidence 5556778888887777777776652 23578889999999999976654322111 1 2368999999999988
Q ss_pred hhHHHHHHHHHHHHHHHHh
Q 014922 392 LGRCVESAYEVASEVSNFL 410 (416)
Q Consensus 392 ~~~ai~sg~~aA~~il~~l 410 (416)
+++|+.||..+|++|++.|
T Consensus 313 VEgA~LSGlAaA~~i~~~L 331 (331)
T COG3380 313 VEGAVLSGLAAADHILNGL 331 (331)
T ss_pred hhHHHhccHHHHHHHHhcC
Confidence 9999999999999998754
No 26
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=99.79 E-value=1.7e-17 Score=165.02 Aligned_cols=296 Identities=18% Similarity=0.106 Sum_probs=183.1
Q ss_pred CCCCcHHHHHHHhhCHHHHHHhhhhhhcccccCCcchhhHHHhhHHHHHHHHhcCChHHHHHHHHHhhccCCCCCCCCCC
Q 014922 68 GHEESVEEFVRRNLGDEVFERLIEPFCSGVYAGDPSKLSMKAAFGKVWKLEQTGGSIIGGTFKAIQEKNKAPKQPRDPRL 147 (416)
Q Consensus 68 ~~~~s~~~~l~~~~g~~~~~~~~~p~~~~~~~~~~~~lS~~~~~~~~~~~~~~~gs~~~~~~~~~~~~~~~~~~~~~~~~ 147 (416)
....|+.+|+++.+..+.++.++. +...+++.++++.++...+ +...+ .
T Consensus 159 ~~~~s~~~~~~~~~~~~~l~~~l~-~~~~~~g~~p~~~~~~~~l--~~~~~-------------~--------------- 207 (502)
T TIGR02734 159 LAWRSLYSKVARFFSDERLRQAFS-FHALFLGGNPFRTPSIYAL--ISALE-------------R--------------- 207 (502)
T ss_pred cCcCCHHHHHHhhcCCHHHHHHhc-ccceeeccCcccchHHHHH--HHHHH-------------h---------------
Confidence 357899999999888888888876 3455778888887754332 11100 0
Q ss_pred CCCCCCceeehhhhHhHHHHHHHHHh---ccceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCChHHHH-h
Q 014922 148 PKPKGQTVGSFRKGLTMLPEAISKRL---GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYVAS-S 223 (416)
Q Consensus 148 ~~~~~~~~~~~~gG~~~l~~~L~~~l---g~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~~~~~-~ 223 (416)
...++++.||++.++++|++.+ |++|+++++|++|..++++.+.|+ +.+|+ +++||.||+|+++..+. .
T Consensus 208 ----~~g~~~~~gG~~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~V~--~~~g~-~~~ad~VI~a~~~~~~~~~ 280 (502)
T TIGR02734 208 ----EWGVWFPRGGTGALVAAMAKLAEDLGGELRLNAEVIRIETEGGRATAVH--LADGE-RLDADAVVSNADLHHTYRR 280 (502)
T ss_pred ----hceEEEcCCCHHHHHHHHHHHHHHCCCEEEECCeEEEEEeeCCEEEEEE--ECCCC-EEECCEEEECCcHHHHHHH
Confidence 0124688999999999999876 679999999999998776534565 35664 78999999999986665 5
Q ss_pred ccCCCC-H-HHHhhhcCCCCC-CEEEEEEEecC---CccccccccCCCCCcceEEecCC-------------CCCceEEE
Q 014922 224 LLRPLS-V-DAAGALSQFYYP-PVAAVSVSYPK---EAIRTECLIDGELKGFGQLHPRS-------------QGVETLGT 284 (416)
Q Consensus 224 ll~~~~-~-~~~~~l~~~~~~-~~~~v~l~~~~---~~~~~~~~~~~~~~~~~~l~~~~-------------~~~~~~~~ 284 (416)
|+++.. + ...+.+++.+++ +..+++++++. + +.. ++ .+..++.++. ...+.+.+
T Consensus 281 l~~~~~~~~~~~~~~~~~~~s~s~~~~~lgl~~~~~~-~~~--~~----~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~v 353 (502)
T TIGR02734 281 LLPNHPRRRYPAARLSRKRPSPSLFVLYFGLLGVDGH-WPQ--LA----HHTLCFGPRYKELFDEIFRKGRLAEDPSLYL 353 (502)
T ss_pred hcCccccccccccccccCCcCCeeeEEEEeeccccCc-CCC--cC----ceeEecCcCHHHHHHHHhcCCCCCCCCcEEE
Confidence 554432 2 234455666765 77888999983 3 221 10 1111111110 01233334
Q ss_pred EccCCCCCCCCCCCcEEEEEEecCCCC----CCCCCCCHHHHHHHHHHHHHHH-hCCCCCCCCcEEEE----------Ee
Q 014922 285 IYSSSLFPNRAPAGRVLLLNYIGGATN----LGILSKKESELVEAVDRDLRKM-LINPNAKDPLVLGV----------RV 349 (416)
Q Consensus 285 ~~~s~~~~~~~p~g~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~----------~~ 349 (416)
...|...|+.+|+|++.+.+++..+.. ..|. ...+++.+.+++.|++. ++... ...+...+ ..
T Consensus 354 ~~~s~~dp~~aP~G~~~~~~~~~~~~~~~~~~~~~-~~k~~~~~~il~~l~~~~~p~l~-~~i~~~~~~TP~t~~~~~~~ 431 (502)
T TIGR02734 354 HRPTVTDPSLAPPGCENLYVLAPVPHLGTADVDWS-VEGPRYRDRILAYLEERAIPGLR-DRIVVERTFTPADFRDRYNA 431 (502)
T ss_pred EcCCCCCCCCCCCCCccEEEEEeCCCCCCCCCCcH-HHHHHHHHHHHHHHHHhcCCChh-HheEEEEEcCHHHHHHhcCC
Confidence 444555677899998887766642221 1222 23467889999999997 65321 12222111 11
Q ss_pred cCCCCCCCCCCHH-HHHHHHHHHhhhcCCCCEEEeeccCC-CCchhHHHHHHHHHHHHHHHHhhh
Q 014922 350 WQQAIPQFLVGHL-DLLDAAKSSLRDNGYQGLFLGGNYVA-GVALGRCVESAYEVASEVSNFLSQ 412 (416)
Q Consensus 350 w~~~~p~~~~g~~-~~~~~~~~~l~~~~~~~l~~aG~~~~-g~~~~~ai~sg~~aA~~il~~l~~ 412 (416)
+.++ .|...+. .....+++.....+++|||+||++++ |.|+++++.||+.||+.|+.+.+.
T Consensus 432 ~~G~--~~G~~~~~~q~~~~rp~~~~t~i~gLyl~G~~~~pG~Gv~g~~~sg~~~a~~il~~~~~ 494 (502)
T TIGR02734 432 WLGS--AFSLEHTLTQSAWFRPHNRDRKIDNLYLVGAGTHPGAGVPGVLGSAKATAKLMLGDLAP 494 (502)
T ss_pred CCcc--ccchhhchhhcccCCCCCCCCCCCCEEEeCCCCCCCCCHHHHHHHHHHHHHHHHhhccC
Confidence 1111 1111110 11111222111126899999999986 679999999999999999988654
No 27
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.75 E-value=6.3e-17 Score=157.06 Aligned_cols=234 Identities=22% Similarity=0.286 Sum_probs=169.1
Q ss_pred eehhhhHhHHHHHHHHHhccceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCChHHHHh--c-cCCCCH-H
Q 014922 156 GSFRKGLTMLPEAISKRLGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYVASS--L-LRPLSV-D 231 (416)
Q Consensus 156 ~~~~gG~~~l~~~L~~~lg~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~~~~~~--l-l~~~~~-~ 231 (416)
..+.+|+..++.+|+..| +|+++.+|..|.+.+++.+.+++.+ +. .+++|+||+|+|..++.. + |.|.+| .
T Consensus 212 ~~~~~G~~~v~~~la~~l--~I~~~~~v~~i~~~~~~~~~~~~~~--~~-~~~~d~vvvt~pl~vLk~~~i~F~P~Lp~~ 286 (501)
T KOG0029|consen 212 LLMKGGYEPVVNSLAEGL--DIHLNKRVRKIKYGDDGAVKVTVET--GD-GYEADAVVVTVPLGVLKSGLIEFSPPLPRW 286 (501)
T ss_pred hHhhCCccHHHhhcCCCc--ceeeceeeEEEEEecCCceEEEEEC--CC-eeEeeEEEEEccHHHhccCceeeCCCCcHH
Confidence 577899999999999955 9999999999999887634555443 43 489999999999999987 4 666555 4
Q ss_pred HHhhhcCCCCCCEEEEEEEecCCccccccccCCCCCcceEEecCCCCCceEEEEccCCCCCCCCCCCcEEEEEEecCCCC
Q 014922 232 AAGALSQFYYPPVAAVSVSYPKEAIRTECLIDGELKGFGQLHPRSQGVETLGTIYSSSLFPNRAPAGRVLLLNYIGGATN 311 (416)
Q Consensus 232 ~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~~p~g~~~l~~~~~~~~~ 311 (416)
..++++++....+.+|.+.|++.||.. +..-||.+.+... ..... .|.+ +.+. .+...++.++.+..+
T Consensus 287 k~~aI~~lg~g~~~Kv~l~F~~~fW~~------~~d~fg~~~~~~~-~~~~~-~f~~-~~~~---~~~~~l~~~~~~~~a 354 (501)
T KOG0029|consen 287 KQEAIDRLGFGLVNKVILEFPRVFWDQ------DIDFFGIVPETSV-LRGLF-TFYD-CKPV---AGHPVLMSVVVGEAA 354 (501)
T ss_pred HHHHHHhcCCCceeEEEEEeccccCCC------CcCeEEEcccccc-ccchh-hhhh-cCcc---CCCCeEEEEehhhhh
Confidence 667899999999999999999999963 3444565432211 11000 1111 1111 133356666656555
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCCCCCCcEEEEEecCCC------CCCCCCCHHH-HHHHHHHHhhhcCCCC-EEEe
Q 014922 312 LGILSKKESELVEAVDRDLRKMLINPNAKDPLVLGVRVWQQA------IPQFLVGHLD-LLDAAKSSLRDNGYQG-LFLG 383 (416)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~w~~~------~p~~~~g~~~-~~~~~~~~l~~~~~~~-l~~a 383 (416)
..+..+++++++..+...|+++++.....+|..+.+.+|... ++...++... .++ .+.. |+.+ +|||
T Consensus 355 ~~~~~~~~~~~~~~~~~~l~k~f~~~~~~~p~~~~vt~w~~d~~~~gsys~~~~~~~~~~y~----~l~~-pi~~~~ffa 429 (501)
T KOG0029|consen 355 ERVETLSDSEIVKKAMKLLRKVFGSEEVPDPLDALVTRWGTDPLSGGSYSYVAVGSDGDDYD----RLAE-PIKNRVFFA 429 (501)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHhccCcCCCccceeeeeecccccCCccccccCCCCChhHHH----HHhc-cccCcEEec
Confidence 667889999999999999999999545578899999999842 4444444322 223 3444 5666 9999
Q ss_pred eccCC---CCchhHHHHHHHHHHHHHHHHhh
Q 014922 384 GNYVA---GVALGRCVESAYEVASEVSNFLS 411 (416)
Q Consensus 384 G~~~~---g~~~~~ai~sg~~aA~~il~~l~ 411 (416)
|+++. ...+++|+.||.++|..|+..+.
T Consensus 430 ge~t~~~~~~tm~GA~~sG~~~a~~i~~~~~ 460 (501)
T KOG0029|consen 430 GEATSRKYPGTMHGAYLSGLRAASDILDSLI 460 (501)
T ss_pred chhhcccCCCchHHHHHhhHHHHHHHHHHHH
Confidence 98774 34578899999999999998876
No 28
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=99.74 E-value=2.4e-16 Score=139.70 Aligned_cols=155 Identities=17% Similarity=0.290 Sum_probs=130.3
Q ss_pred CCCCcHHHHHHHh-hCHHHHHHhhhhhhcccccCCcchhhHHHhhHHHHHHHHhcCChHHHHHHHHHhhccCCCCCCCCC
Q 014922 68 GHEESVEEFVRRN-LGDEVFERLIEPFCSGVYAGDPSKLSMKAAFGKVWKLEQTGGSIIGGTFKAIQEKNKAPKQPRDPR 146 (416)
Q Consensus 68 ~~~~s~~~~l~~~-~g~~~~~~~~~p~~~~~~~~~~~~lS~~~~~~~~~~~~~~~gs~~~~~~~~~~~~~~~~~~~~~~~ 146 (416)
..++|+++||+++ ||..+.++++.|+..++|+++..+++..-+...+ .+..++|++. +
T Consensus 148 ~~~~tl~~~L~~~~f~~af~e~~l~P~~aaiwstp~~d~~~~pa~~~~-~f~~nhGll~------l-------------- 206 (447)
T COG2907 148 QGDTTLAQYLKQRNFGRAFVEDFLQPLVAAIWSTPLADASRYPACNFL-VFTDNHGLLY------L-------------- 206 (447)
T ss_pred CCCccHHHHHHhcCccHHHHHHhHHHHHHHHhcCcHhhhhhhhHHHHH-HHHhccCcee------c--------------
Confidence 5789999999984 9999999999999999999999999876655444 3446778541 1
Q ss_pred CCCCCCCceeehhhhHhHHHHHHHHHhccceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCChHHHHhccC
Q 014922 147 LPKPKGQTVGSFRKGLTMLPEAISKRLGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYVASSLLR 226 (416)
Q Consensus 147 ~~~~~~~~~~~~~gG~~~l~~~L~~~lg~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~~~~~~ll~ 226 (416)
.+.+..+.+.||.-..+++|++.+.++|+++++|.+|..-.+| +.|+ ..+|+ +.++|+||+++.+.++..|++
T Consensus 207 ---~~rp~wrtV~ggS~~yvq~laa~~~~~i~t~~~V~~l~rlPdG-v~l~--~~~G~-s~rFD~vViAth~dqAl~mL~ 279 (447)
T COG2907 207 ---PKRPTWRTVAGGSRAYVQRLAADIRGRIETRTPVCRLRRLPDG-VVLV--NADGE-SRRFDAVVIATHPDQALALLD 279 (447)
T ss_pred ---CCCCceeEcccchHHHHHHHhccccceeecCCceeeeeeCCCc-eEEe--cCCCC-ccccceeeeecChHHHHHhcC
Confidence 1234567889999999999999999999999999999999998 7775 45685 778999999999999999999
Q ss_pred CCCHHHHhhhcCCCCCCEEEEEEE
Q 014922 227 PLSVDAAGALSQFYYPPVAAVSVS 250 (416)
Q Consensus 227 ~~~~~~~~~l~~~~~~~~~~v~l~ 250 (416)
...|+.++.+..+.|+....|...
T Consensus 280 e~sp~e~qll~a~~Ys~n~aVlht 303 (447)
T COG2907 280 EPSPEERQLLGALRYSANTAVLHT 303 (447)
T ss_pred CCCHHHHHHHHhhhhhhceeEEee
Confidence 988988889999999877666554
No 29
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=99.74 E-value=3.1e-16 Score=155.29 Aligned_cols=295 Identities=13% Similarity=0.137 Sum_probs=173.7
Q ss_pred CCcHHHHHHHhhCHHHHHHhhhhhhcccccC-CcchhhHHHhhHHHHHHHHhcCChHHHHHHHHHhhccCCCCCCCCCCC
Q 014922 70 EESVEEFVRRNLGDEVFERLIEPFCSGVYAG-DPSKLSMKAAFGKVWKLEQTGGSIIGGTFKAIQEKNKAPKQPRDPRLP 148 (416)
Q Consensus 70 ~~s~~~~l~~~~g~~~~~~~~~p~~~~~~~~-~~~~lS~~~~~~~~~~~~~~~gs~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (416)
..|+.+|+++.+..+.++.++...+.. ++. ++.+.++....-.+..
T Consensus 169 ~~s~~~~~~~~~~~~~l~~~l~~~~~~-~~~~p~~~~p~~~~~~~~~~-------------------------------- 215 (493)
T TIGR02730 169 PQNAGDIARRYIRDPGLLKFIDIECFC-WSVVPADQTPMINAGMVFSD-------------------------------- 215 (493)
T ss_pred hccHHHHHHHhcCCHHHHHHHHHHHHh-ccCCCcccchhhhHHHhhcc--------------------------------
Confidence 378888998887777777777643322 233 3355554332211110
Q ss_pred CCCCCceeehhhhHhHHHHHHHHHh---ccceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCChH-HHHhc
Q 014922 149 KPKGQTVGSFRKGLTMLPEAISKRL---GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSY-VASSL 224 (416)
Q Consensus 149 ~~~~~~~~~~~gG~~~l~~~L~~~l---g~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~~-~~~~l 224 (416)
.....++++.||++.++++|++.+ |++|+++++|++|..++++.+.|. +.+|+ +++||.||+|+.+. .+.+|
T Consensus 216 -~~~~g~~~~~gG~~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~--~~~g~-~~~ad~vV~a~~~~~~~~~L 291 (493)
T TIGR02730 216 -RHYGGINYPKGGVGQIAESLVKGLEKHGGQIRYRARVTKIILENGKAVGVK--LADGE-KIYAKRIVSNATRWDTFGKL 291 (493)
T ss_pred -cccceEecCCChHHHHHHHHHHHHHHCCCEEEeCCeeeEEEecCCcEEEEE--eCCCC-EEEcCEEEECCChHHHHHHh
Confidence 001235789999999999999876 679999999999998776534454 35674 78999999998664 45567
Q ss_pred cCCC--CHHHHhhhcCCCCC-CEEEEEEEecCCccccccccCCCCCcceEEecC----CCCCceEEEEccCCCCCCCCCC
Q 014922 225 LRPL--SVDAAGALSQFYYP-PVAAVSVSYPKEAIRTECLIDGELKGFGQLHPR----SQGVETLGTIYSSSLFPNRAPA 297 (416)
Q Consensus 225 l~~~--~~~~~~~l~~~~~~-~~~~v~l~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~s~~~~~~~p~ 297 (416)
++.. ++..+..+++++++ +..+++++++.+..... . ..+.++.+. ....+.+.+..++...|+.+|+
T Consensus 292 l~~~~~~~~~~~~~~~~~~s~s~~~~~l~l~~~~~p~~-----~-~~~~~~~~~~~~~~~~~~~~~v~~ps~~dps~aP~ 365 (493)
T TIGR02730 292 LKAENLPKKEKNWQRNYVKSPSFLSLHLGVKADVLPPG-----T-ECHHILLEDWTNLEKPQGTIFVSIPTLLDPSLAPE 365 (493)
T ss_pred CCccccchhhHHHHhhccCCCceEEEEEEecCccCCCC-----C-CccEEecchhhccCCCCCeEEEEeCCCCCCCCCcC
Confidence 7542 23334444566665 68899999987432110 0 001111111 1112333344445556778999
Q ss_pred CcEEEEEEecCCCCCCCCCC-------CHHHHHHHHHHHHHHHhCCCCCCCCcEEEEE---ecCC--CC--CCCCCCHHH
Q 014922 298 GRVLLLNYIGGATNLGILSK-------KESELVEAVDRDLRKMLINPNAKDPLVLGVR---VWQQ--AI--PQFLVGHLD 363 (416)
Q Consensus 298 g~~~l~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---~w~~--~~--p~~~~g~~~ 363 (416)
|++++++++.... ..|.+. ..+++.+.+++.|+++++... ...+...+. .|.. .. ..|..-+..
T Consensus 366 G~~~i~~~~~~~~-~~w~~~~~~~y~~~k~~~~~~il~~l~~~~p~l~-~~I~~~~~~TP~t~~r~~~~~~G~~G~~~~~ 443 (493)
T TIGR02730 366 GHHIIHTFTPSSM-EDWQGLSPKDYEAKKEADAERIIDRLEKIFPGLD-SAIDYKEVGTPRTHRRFLGRDSGTYGPIPRR 443 (493)
T ss_pred CcEEEEEecCCCh-hhccCCCcHHHHHHHHHHHHHHHHHHHHHCCChh-hcEEEEEeeCchhHHHHhCCCCcccCCcccc
Confidence 9988887764221 122111 235688899999999876421 122211111 1110 00 011111100
Q ss_pred HHHHHH--HHhhhcCCCCEEEeeccCC-CCchhHHHHHHHHHHHHHHHHh
Q 014922 364 LLDAAK--SSLRDNGYQGLFLGGNYVA-GVALGRCVESAYEVASEVSNFL 410 (416)
Q Consensus 364 ~~~~~~--~~l~~~~~~~l~~aG~~~~-g~~~~~ai~sg~~aA~~il~~l 410 (416)
...... +...+ +++|||+||++++ |.|+++|+.||+.+|++|+.++
T Consensus 444 ~~~~~~~~~~~~t-~i~gLyl~G~~~~pG~Gv~g~~~sG~~~a~~i~~~~ 492 (493)
T TIGR02730 444 TLPGLLPMPFNRT-AIPGLYCVGDSCFPGQGLNAVAFSGFACAHRVAADL 492 (493)
T ss_pred cccccccCCCCCC-CCCCeEEecCcCCCCCCHHHHHHHHHHHHHHHHhhc
Confidence 000001 01234 7899999999885 7799999999999999998764
No 30
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.41 E-value=3.8e-12 Score=125.29 Aligned_cols=289 Identities=17% Similarity=0.159 Sum_probs=150.4
Q ss_pred CCCcHHHHHHHhhCHHHHHHhhhhhhcccccCCcchhhHHHhhHHHHHHHHhcCChHHHHHHHHHhhccCCCCCCCCCCC
Q 014922 69 HEESVEEFVRRNLGDEVFERLIEPFCSGVYAGDPSKLSMKAAFGKVWKLEQTGGSIIGGTFKAIQEKNKAPKQPRDPRLP 148 (416)
Q Consensus 69 ~~~s~~~~l~~~~g~~~~~~~~~p~~~~~~~~~~~~lS~~~~~~~~~~~~~~~gs~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (416)
...|+.+++...|+.+..+.++.....-.. .++.+.+ ++...+..+.
T Consensus 165 ~~~~~~~~~~~~f~~~~~r~~~~~~~~~~~-~~p~~~~--a~~~~~~~~~------------------------------ 211 (487)
T COG1233 165 SLTSALDFFRGRFGSELLRALLAYSAVYGG-APPSTPP--ALYLLLSHLG------------------------------ 211 (487)
T ss_pred hhhhHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCCchh--HHHHHHHHhc------------------------------
Confidence 456777777777777777666655322223 5666655 2222222110
Q ss_pred CCCCCceeehhhhHhHHHHHHHHHh---ccceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCChHHHHhcc
Q 014922 149 KPKGQTVGSFRKGLTMLPEAISKRL---GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYVASSLL 225 (416)
Q Consensus 149 ~~~~~~~~~~~gG~~~l~~~L~~~l---g~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~~~~~~ll 225 (416)
....+++++|||+.|+++|++.+ |++|+++++|++|..++++.++++ +.+| +.+++|.||+++.+.....+.
T Consensus 212 --~~~G~~~p~GG~~al~~aL~~~~~~~Gg~I~~~~~V~~I~v~~g~g~~~~--~~~g-~~~~ad~vv~~~~~~~~~~l~ 286 (487)
T COG1233 212 --LSGGVFYPRGGMGALVDALAELAREHGGEIRTGAEVSQILVEGGKGVGVR--TSDG-ENIEADAVVSNADPALLARLL 286 (487)
T ss_pred --ccCCeeeeeCCHHHHHHHHHHHHHHcCCEEECCCceEEEEEeCCcceEEe--cccc-ceeccceeEecCchhhhhhhh
Confidence 12336899999999999999976 689999999999999887546665 5566 488999999999884444554
Q ss_pred CCCCHHHHhhhcCCCCC-CEEEEEEEecCCccccccccCCCCCcceEEecCCC-----C-------CceEEEEccCCCCC
Q 014922 226 RPLSVDAAGALSQFYYP-PVAAVSVSYPKEAIRTECLIDGELKGFGQLHPRSQ-----G-------VETLGTIYSSSLFP 292 (416)
Q Consensus 226 ~~~~~~~~~~l~~~~~~-~~~~v~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~-------~~~~~~~~~s~~~~ 292 (416)
+.... .+......+. +....++.++.. ... ......++..+.. . .+.+.+..+|...|
T Consensus 287 ~~~~~--~~~~~~~~~~~~al~~~~g~~~~-~~~------~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~ps~~Dp 357 (487)
T COG1233 287 GEARR--PRYRGSYLKSLSALSLYLGLKGD-LLP------LAHHTTILLGDTREQIEEAFDDRAGRPPPLYVSIPSLTDP 357 (487)
T ss_pred hhhhh--hccccchhhhhHHHHhccCCCCC-Ccc------hhhcceEecCCcHHHHHHHhhhhcCCCCceEEeCCCCCCC
Confidence 32211 0111111111 233444444442 000 0000111111100 0 00233455566677
Q ss_pred CCCCCCcEE-EEEEecCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCCCcEEEEEecC-----CCCC-----CCCCCH
Q 014922 293 NRAPAGRVL-LLNYIGGATNLGILSKKESELVEAVDRDLRKMLINPNAKDPLVLGVRVWQ-----QAIP-----QFLVGH 361 (416)
Q Consensus 293 ~~~p~g~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~w~-----~~~p-----~~~~g~ 361 (416)
+.+|+|++. +..+..-+ .....+...+++.+. ...++++.+... +.+ .....+. ..+. .+...+
T Consensus 358 s~AP~G~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~p~~~--~~i-v~~~~~tp~~~e~~~~~~~G~~~~~~~ 432 (487)
T COG1233 358 SLAPEGKHSTFAQLVPVP-SLGDYDELKESLADA-IDALEELAPGLR--DRI-VAREVLTPLDLERYLGLPGGDIFGGAH 432 (487)
T ss_pred ccCCCCCcceeeeeeecC-cCCChHHHHHHHHHH-HHHHhhcCCCcc--cce-eEEEEeChHHHHHhcCCCCCcccchhc
Confidence 899998762 22222111 111122223444444 446667655322 222 1111111 1111 111111
Q ss_pred H-HHHHHHHHHhhhcCCCCEEEeeccCC-CCchhHHHHHHHHHHHHHHHH
Q 014922 362 L-DLLDAAKSSLRDNGYQGLFLGGNYVA-GVALGRCVESAYEVASEVSNF 409 (416)
Q Consensus 362 ~-~~~~~~~~~l~~~~~~~l~~aG~~~~-g~~~~~ai~sg~~aA~~il~~ 409 (416)
. ......++.....+++|||++|++++ |.|++++.-++...+..+...
T Consensus 433 ~~~q~~~~rp~~~~t~i~~LYl~Ga~t~PG~Gv~g~~g~~~a~~~~~~~~ 482 (487)
T COG1233 433 TLDQLGPFRPPPKSTPIKGLYLVGASTHPGGGVPGVPGSAAAVALLIDLD 482 (487)
T ss_pred ChhhhcCCCCCCCCCCcCceEEeCCcCCCCCCcchhhhhHHHHHhhhccc
Confidence 1 11111111111127899999998886 778888777776666665544
No 31
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=99.32 E-value=2.8e-10 Score=104.98 Aligned_cols=243 Identities=16% Similarity=0.110 Sum_probs=143.7
Q ss_pred ceeehhhhHhHHHHHHHHHh---ccceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCCh-HHHHhccCCC-
Q 014922 154 TVGSFRKGLTMLPEAISKRL---GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPS-YVASSLLRPL- 228 (416)
Q Consensus 154 ~~~~~~gG~~~l~~~L~~~l---g~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~-~~~~~ll~~~- 228 (416)
.+.|+.|||+.+++++++.+ |++|.+++.|++|..++++.+.|.+ .+|. ++.+..||++..+ .+..+|+++.
T Consensus 255 ~~~Yp~GG~Gavs~aia~~~~~~GaeI~tka~Vq~Illd~gka~GV~L--~dG~-ev~sk~VvSNAt~~~Tf~kLlp~e~ 331 (561)
T KOG4254|consen 255 GWGYPRGGMGAVSFAIAEGAKRAGAEIFTKATVQSILLDSGKAVGVRL--ADGT-EVRSKIVVSNATPWDTFEKLLPGEA 331 (561)
T ss_pred cccCCCCChhHHHHHHHHHHHhccceeeehhhhhheeccCCeEEEEEe--cCCc-EEEeeeeecCCchHHHHHHhCCCcc
Confidence 36799999999999999987 6799999999999998876455654 6885 8889999998755 5556888763
Q ss_pred CHHHHhhhcCCCCC-CEEE----EEEEecCCccccccccCCCCCcce-EEecCC----------------CCCceEEEEc
Q 014922 229 SVDAAGALSQFYYP-PVAA----VSVSYPKEAIRTECLIDGELKGFG-QLHPRS----------------QGVETLGTIY 286 (416)
Q Consensus 229 ~~~~~~~l~~~~~~-~~~~----v~l~~~~~~~~~~~~~~~~~~~~~-~l~~~~----------------~~~~~~~~~~ 286 (416)
+|+.. .++++.+. ++.+ .++.++..- ...+|+. ++. ...+++ +..+++.+.+
T Consensus 332 LPeef-~i~q~d~~spv~k~~~psFl~~~~~~--~~plph~---~~~i~~~~ed~~~~H~~v~D~~~gl~s~~pvI~~si 405 (561)
T KOG4254|consen 332 LPEEF-VIQQLDTVSPVTKDKLPSFLCLPNTK--SLPLPHH---GYTIHYNAEDTQAHHRAVEDPRNGLASHRPVIELSI 405 (561)
T ss_pred CCchh-hhhhcccccccccccCcceeecCCCC--CCCCCcc---ceeEEecCchHHHHHHHHhChhhcccccCCeEEEec
Confidence 45432 33444433 2332 233332211 1112221 111 111111 1246666778
Q ss_pred cCCCCCCCCCCCcEEEEEEecCCCCCCCC-------CCCHHHHHHHHHHHHHHHhCCCCCCCCcEEEEE----------e
Q 014922 287 SSSLFPNRAPAGRVLLLNYIGGATNLGIL-------SKKESELVEAVDRDLRKMLINPNAKDPLVLGVR----------V 349 (416)
Q Consensus 287 ~s~~~~~~~p~g~~~l~~~~~~~~~~~~~-------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----------~ 349 (416)
+|...|+.+|+|++++..|..... ..|. ..-.++..+++.+.++++++.... ..+.+.+- +
T Consensus 406 PS~lDptlappg~Hvl~lf~~~t~-~~w~g~~~~eye~~K~~~ae~~~~~ie~l~Pgfss-sv~~~dvgTP~t~qr~l~~ 483 (561)
T KOG4254|consen 406 PSSLDPTLAPPGKHVLHLFTQYTP-EEWEGGLKGEYETKKEAFAERVFSVIEKLAPGFSS-SVESYDVGTPPTHQRFLGR 483 (561)
T ss_pred ccccCCCcCCCCceEEEEeccCCc-cccccCCcccchHHHHHHHHHHHHHHHHHcCCccc-eEEEEecCCCchhhHHhcC
Confidence 888888889999999988875432 1222 223467889999999988765431 22111110 1
Q ss_pred cCCCCCCCCCCHHHHH--HHHHH--HhhhcCCCCEEEeeccC-CCCchhHHHHHHHHHHHHHHHHh
Q 014922 350 WQQAIPQFLVGHLDLL--DAAKS--SLRDNGYQGLFLGGNYV-AGVALGRCVESAYEVASEVSNFL 410 (416)
Q Consensus 350 w~~~~p~~~~g~~~~~--~~~~~--~l~~~~~~~l~~aG~~~-~g~~~~~ai~sg~~aA~~il~~l 410 (416)
-.+.+....-++.... .++.. .-++ |+++||+||+.. .|.|+.++- |+.+|...+...
T Consensus 484 ~~Gn~~~~~~~ld~g~l~~Pv~~~s~y~t-PI~~LYlcGs~afPGgGV~a~a--G~~~A~~a~~~~ 546 (561)
T KOG4254|consen 484 PGGNIFHGAMGLDQGYLHRPVMAWSNYST-PIPGLYLCGSGAFPGGGVMAAA--GRLAAHSAILDR 546 (561)
T ss_pred CCCcccCcccccccccccCCccccccCCC-CCCceEEecCCCCCCCCccccc--hhHHHHHHhhhh
Confidence 1111111111111100 01100 1134 899999999765 477777744 888888876554
No 32
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=99.32 E-value=3.9e-09 Score=101.93 Aligned_cols=182 Identities=14% Similarity=0.158 Sum_probs=113.9
Q ss_pred hhHHHhcCCCCceeeCCCCCCceEE-ECCeeeeCCCCCCCCccccCCChhhHHHhhh--cccC-CCC-----CCC--CCC
Q 014922 2 LKMVVDSGLKDDLVLGDPNAPRFVL-WNGRLRPVPSSPTDLPIFDLMSIGGKIRAGL--GALG-LRP-----PPP--GHE 70 (416)
Q Consensus 2 ~~l~~elGl~~~l~~~~~~~~~~i~-~~g~~~~~p~~~~~~~~~~~l~~~~~lr~~~--~~~~-~~~-----~~~--~~~ 70 (416)
.+++.+.|+...+.+..- ...+++ .+|+++++|.+..+.+..+++++.+|.+.+. ..+. +.. +.. .+.
T Consensus 87 v~lL~~s~v~ryleF~~l-~g~~v~~~~g~~~~vP~s~~~~~~s~ll~l~eKr~l~kfl~~v~~~~~~~~~~~~~~~~d~ 165 (443)
T PTZ00363 87 VKILLHTDVTRYLEFKVI-DGSYVYQKEGKIHKVPATDMEALSSPLMGFFEKNRCKNFLQYVSNYDENDPETHKGLNLKT 165 (443)
T ss_pred HHHHhhcCccceeeeEEe-ceEEEEecCCeEEECCCCHHHHhhCCCcchhhHHHHHHHHHHHHhhccCChhhhcccCccc
Confidence 467788888887776433 246777 7999999999877777788999888765441 1111 111 111 346
Q ss_pred CcHHHHHHHh-hCHHHHH---HhhhhhhcccccCCcchhhHHHhhHHHHHHHHhcCChHHHHHHHHHhhccCCCCCCCCC
Q 014922 71 ESVEEFVRRN-LGDEVFE---RLIEPFCSGVYAGDPSKLSMKAAFGKVWKLEQTGGSIIGGTFKAIQEKNKAPKQPRDPR 146 (416)
Q Consensus 71 ~s~~~~l~~~-~g~~~~~---~~~~p~~~~~~~~~~~~lS~~~~~~~~~~~~~~~gs~~~~~~~~~~~~~~~~~~~~~~~ 146 (416)
+|+.||+++. +.+...+ +++..+....|... ++...+.++..+.. |+ .
T Consensus 166 ~T~~d~L~~~~ls~~~~d~i~~~ial~~~~~~~~~----pa~~tl~ri~~y~~---S~-----~---------------- 217 (443)
T PTZ00363 166 MTMAQLYKKFGLEDNTIDFVGHAVALYTNDDYLNK----PAIETVMRIKLYMD---SL-----S---------------- 217 (443)
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHhhcccccccC----CHHHHHHHHHHHHH---HH-----h----------------
Confidence 8999999774 3444333 33333333233333 33344444432211 11 0
Q ss_pred CCCCCCCceeehhhhHhHHHHHHHHH---hccceecCceeeeEEEcCCC-ceEEEEeCCCCceEEecCEEEEcCC
Q 014922 147 LPKPKGQTVGSFRKGLTMLPEAISKR---LGSKVKLSWKLSGVKKLDSG-EYSLTYETPEGLVSLRSRSVVMTVP 217 (416)
Q Consensus 147 ~~~~~~~~~~~~~gG~~~l~~~L~~~---lg~~I~l~~~V~~I~~~~~~-~v~v~~~~~~g~~~~~ad~VI~a~p 217 (416)
.+....+.++.||++.|+++|++. .|++++++++|++|..++++ .+.|+ +.+|+ ++.|+.||+...
T Consensus 218 --~~g~~p~~yp~gG~g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~--~~~Ge-~i~a~~VV~~~s 287 (443)
T PTZ00363 218 --RYGKSPFIYPLYGLGGLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVK--SEGGE-VAKCKLVICDPS 287 (443)
T ss_pred --hccCCcceeeCCCHHHHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEE--ECCCc-EEECCEEEECcc
Confidence 011123467799999999999954 47899999999999987643 23454 45774 889999999644
No 33
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=99.31 E-value=4.9e-11 Score=112.31 Aligned_cols=287 Identities=13% Similarity=0.093 Sum_probs=164.5
Q ss_pred ceEEECCeeeeCCCCCCCCccccCCC--hhhHHHhhh-cccCCCCCCC-CCCCcHHHHHHHhhCHHHHHHhhhhhhcccc
Q 014922 23 RFVLWNGRLRPVPSSPTDLPIFDLMS--IGGKIRAGL-GALGLRPPPP-GHEESVEEFVRRNLGDEVFERLIEPFCSGVY 98 (416)
Q Consensus 23 ~~i~~~g~~~~~p~~~~~~~~~~~l~--~~~~lr~~~-~~~~~~~~~~-~~~~s~~~~l~~~~g~~~~~~~~~p~~~~~~ 98 (416)
..++++|+++++|-+..++.. ++. ....+...+ .........+ ..-.+..||+.+++|+.+++.|+.|+..+.|
T Consensus 82 ~~~~~~g~~~~~P~~~~~i~~--l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~d~~~~~~G~~lye~ff~~Yt~K~W 159 (377)
T TIGR00031 82 VLALYNNLDLTLPFNFNQFRK--LLGVKDAQELQNFFNAQFKYGDHVPLEELQEIADPDIQLLYQFLYQKVYKPYTVKQW 159 (377)
T ss_pred EEEEECCeEEccCCCHHHHHH--hcccchHHHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHHHHHHHHHhccccCceee
Confidence 467899999999976433311 121 112222211 1110000111 2223444555999999999999999999999
Q ss_pred cCCcchhhHHHhhHHHHHHHHhcCChHHHHHHHHHhhccCCCCCCCCCCCCCCCCceeehhhhHhHHHHHHHHHhcccee
Q 014922 99 AGDPSKLSMKAAFGKVWKLEQTGGSIIGGTFKAIQEKNKAPKQPRDPRLPKPKGQTVGSFRKGLTMLPEAISKRLGSKVK 178 (416)
Q Consensus 99 ~~~~~~lS~~~~~~~~~~~~~~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~L~~~lg~~I~ 178 (416)
+.++++|++.|+- ++..- + . +|.+ -.....++++++|...|+++|.+.-+.+|+
T Consensus 160 g~~p~el~~~~~~-RvP~~------~-----~------------~d~~--yf~d~~q~~P~~Gyt~~~~~ml~~~~i~v~ 213 (377)
T TIGR00031 160 GLPAEEIDPFVIG-RVPVV------L-----S------------EDSS--YFPDRYQGLPKGGYTKLFEKMLDHPLIDVK 213 (377)
T ss_pred CCChHHCCHHHeE-ecceE------e-----c------------CCCC--cccccccccccccHHHHHHHHHhcCCCEEE
Confidence 9999999999874 33310 0 0 0111 112334578999999999999988555899
Q ss_pred cCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCChHHHHhccCCCCHHHHhhhcCCCCCCEEEEEEEe-cCCccc
Q 014922 179 LSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYVASSLLRPLSVDAAGALSQFYYPPVAAVSVSY-PKEAIR 257 (416)
Q Consensus 179 l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~~~~~~ll~~~~~~~~~~l~~~~~~~~~~v~l~~-~~~~~~ 257 (416)
||+.+..++..+++ |.+. ++ .+ .+.||.|.|++.+-. ....+++|.++.. .... +.+
T Consensus 214 l~~~~~~~~~~~~~-~~~~----~~--~~-~~~vi~Tg~id~~f~----------~~~g~L~yrsl~f-~~e~~~~~--- 271 (377)
T TIGR00031 214 LNCHINLLKDKDSQ-LHFA----NK--AI-RKPVIYTGLIDQLFG----------YRFGALQYRSLKF-EWERHEFK--- 271 (377)
T ss_pred eCCccceeeccccc-eeec----cc--cc-cCcEEEecCchHHHh----------hccCcccceeEEE-EEEEeccc---
Confidence 99988888865443 5442 22 23 388999999876544 3345566765544 2222 221
Q ss_pred cccccCCCCCcceEEe-cCCCCCceEEEEccCCCCCCCCCCCcEEEEEEecCCCCCCCCCCCHHHHHHHHHHHHHHHhCC
Q 014922 258 TECLIDGELKGFGQLH-PRSQGVETLGTIYSSSLFPNRAPAGRVLLLNYIGGATNLGILSKKESELVEAVDRDLRKMLIN 336 (416)
Q Consensus 258 ~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~s~~~~~~~p~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 336 (416)
..++..++. | +..++..++..+...+... ..+++.-
T Consensus 272 -------~~q~~~~vnyp--~~~~~tRI~e~k~f~~~~~--~~t~i~~-------------------------------- 308 (377)
T TIGR00031 272 -------NFQGYAVVNFP--LNVPITRIVEYKHLTYVGS--KQTIVSK-------------------------------- 308 (377)
T ss_pred -------cCCCCeEEEcC--CCCCcceEEeeecCCCCCC--CCeEEEe--------------------------------
Confidence 123333332 2 2223333332222111100 0011100
Q ss_pred CCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHHhhhcCCCCEEEeec--cCCCCchhHHHHHHHHHHHHHH
Q 014922 337 PNAKDPLVLGVRVWQQAIPQFLVGHLDLLDAAKSSLRDNGYQGLFLGGN--YVAGVALGRCVESAYEVASEVS 407 (416)
Q Consensus 337 ~~~~~~~~~~~~~w~~~~p~~~~g~~~~~~~~~~~l~~~~~~~l~~aG~--~~~g~~~~~ai~sg~~aA~~il 407 (416)
+.|..+....+...||.+.....+....+++ +.+ ..+||+++|- .+....+..||.+|..+|++++
T Consensus 309 ---E~~~~~~~~~~~pyYpi~~~~~~~~~~~y~~-la~-~~~~v~~~GRlg~y~Y~nMD~~i~~al~~~~~~~ 376 (377)
T TIGR00031 309 ---EYPGEWKVGDPEPYYPVNDNKNMALFKKYLE-LAS-REDNLILLGRLAEYQYYDMDQAILAALYKAEQLL 376 (377)
T ss_pred ---ecchhhcCCCceeeeeccCHHHHHHHHHHHH-HHh-cCCCEEEeeeeeEeEeecHHHHHHHHHHHHHHhh
Confidence 1122222222345577777777777777766 443 3579999993 2334678889999999999875
No 34
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=99.02 E-value=2.8e-09 Score=101.36 Aligned_cols=369 Identities=14% Similarity=0.125 Sum_probs=211.3
Q ss_pred ChhHHHhcCCCCceeeCCCCCCceEEE---CCeeeeCCC--CCC------CCccccCCChhhHHHhhhcccCC-----CC
Q 014922 1 MLKMVVDSGLKDDLVLGDPNAPRFVLW---NGRLRPVPS--SPT------DLPIFDLMSIGGKIRAGLGALGL-----RP 64 (416)
Q Consensus 1 ~~~l~~elGl~~~l~~~~~~~~~~i~~---~g~~~~~p~--~~~------~~~~~~~l~~~~~lr~~~~~~~~-----~~ 64 (416)
|++|++|++.++.+...... ..++-. .|-+-+++. .+. .++..+.+...+|++.+...... +.
T Consensus 64 ~~~ll~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~p~p~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~g~~~~ 142 (485)
T COG3349 64 LLTLLKELPIEDRLQLREHT-KTFVGSGTRPGAIGRFARPDAPQPTNGLKAFLRLPQLPRREKIRFVLRLGDAPIGADRS 142 (485)
T ss_pred HHHHhhhCCchheeehHhhh-hhhcccCCCCCcccccccCCCCCcchhhhhhhhccccCHHHHhHHhhccccccchhHHH
Confidence 57899999999776653332 223222 222222222 111 12345567777788766543211 11
Q ss_pred CCCCCCCcHHHHHHHh-hCHHHHHHhhhhhhcccccCCcchhhHHHhhHHHHHHHHhcCChHHHHHHHHHhhccCCCCCC
Q 014922 65 PPPGHEESVEEFVRRN-LGDEVFERLIEPFCSGVYAGDPSKLSMKAAFGKVWKLEQTGGSIIGGTFKAIQEKNKAPKQPR 143 (416)
Q Consensus 65 ~~~~~~~s~~~~l~~~-~g~~~~~~~~~p~~~~~~~~~~~~lS~~~~~~~~~~~~~~~gs~~~~~~~~~~~~~~~~~~~~ 143 (416)
....|+.|+.|||+.. .....++..|.|........++++.|++.++..+..+....
T Consensus 143 ~~eld~~s~~d~l~~~g~~~~~~k~~~~~~~~~l~f~~~e~~sa~~~lt~~~~~~~~~---------------------- 200 (485)
T COG3349 143 LRELDKISFADWLKEKGAREGAYKAAFAPIALALTFIDPEGCSARFFLTILNLFLIVT---------------------- 200 (485)
T ss_pred HHHHhcccHHHHHHHhCCCchhHHHHHHHHHHhhcccCcccCcchhHHHHHHHHHHhc----------------------
Confidence 2247999999999985 45678889999999888889999999987776655321111
Q ss_pred CCCCCCCCCCceeehhhhHh-HHHHHHHHHh---ccceecCceeeeEEEcCCC----ceEEEEeCCCCceEEecCEEEEc
Q 014922 144 DPRLPKPKGQTVGSFRKGLT-MLPEAISKRL---GSKVKLSWKLSGVKKLDSG----EYSLTYETPEGLVSLRSRSVVMT 215 (416)
Q Consensus 144 ~~~~~~~~~~~~~~~~gG~~-~l~~~L~~~l---g~~I~l~~~V~~I~~~~~~----~v~v~~~~~~g~~~~~ad~VI~a 215 (416)
..+....-+.|++. .+...+.+.+ |.++++..+|..|...... .+.+.+ +..-.+...++.++.+
T Consensus 201 ------~~~~i~~~~~g~~~E~~~~p~~~yi~~~G~~v~~~~pv~~l~l~~~~~~~~~~g~~~-~~~~~e~~~~~~~~~~ 273 (485)
T COG3349 201 ------LEASILRNLRGSPDEVLLQPWTEYIPERGRKVHADYPVKELDLDGARGLAKVTGGDV-TGPEQEQQAALAVVDA 273 (485)
T ss_pred ------cCcchhhhhcCCCcceeeehhhhhccccCceeeccceeeeeeccccccccceEeeee-cCcceEeeehhhhhcc
Confidence 00111223334332 2445555555 5699999999999876521 133433 2222234556777777
Q ss_pred CChHHHHhccCCCCH--HHHhhhcCCCCCCEEEEEEEecCCccccccccCCCCCcceEEec-CCCCCceEEEEccCCC-C
Q 014922 216 VPSYVASSLLRPLSV--DAAGALSQFYYPPVAAVSVSYPKEAIRTECLIDGELKGFGQLHP-RSQGVETLGTIYSSSL-F 291 (416)
Q Consensus 216 ~p~~~~~~ll~~~~~--~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~s~~-~ 291 (416)
...+.+..+++...+ +....+..++..+++++++.|+...+.-. .....+++.. ........++++++.. +
T Consensus 274 ~~v~~~~~~~ps~W~~~~~f~~ly~l~~~p~~~~~l~~~~~~~~~~-----~~~~~~~~dn~~~s~~~l~~~~ad~~~~~ 348 (485)
T COG3349 274 FAVQRFKRDLPSEWPKWSNFDGLYGLRLVPVITLHLRFDGWVTELT-----DRNQQFGIDNLLWSDDTLGGVVADLALTS 348 (485)
T ss_pred cccchHhhcCcccccccccccccccccccceeEEEEeecCcccccc-----ccchhhhhhccccccccCCceeeeccccc
Confidence 777777777665433 34556667777799999999986433211 1111111110 0111122234433322 2
Q ss_pred CCCCCCCc-EEEEEEecCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHH
Q 014922 292 PNRAPAGR-VLLLNYIGGATNLGILSKKESELVEAVDRDLRKMLINPNAKDPLVLGVRVWQQAIPQFLVGHLDLLDAAKS 370 (416)
Q Consensus 292 ~~~~p~g~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~w~~~~p~~~~g~~~~~~~~~~ 370 (416)
+.....|. ..+-..+. ....+...+++++.....+.+...++.....+ ....+.+-..+.....||......
T Consensus 349 ~~y~e~g~~~~le~~~~--~~~~~~~~~~~~~~a~~e~~~~~~vP~~~~a~-~~~~~i~~~q~~~~~~pgs~~~rP---- 421 (485)
T COG3349 349 PDYVEPGAGCYLEKVLA--PGWPFLFESDEAIVATFEKELYELVPSLAEAK-LKSSVLVNQQSLYGLAPGSYHYRP---- 421 (485)
T ss_pred hhhccccchhhhhhhhc--ccccccccchhhHHHHHHHHhhhcCCchhccc-ccccceeccccccccCCCccccCC----
Confidence 21111121 11111111 12235566788888999999987665432222 333444445555666777544333
Q ss_pred HhhhcCCCCEEEeeccCCC---CchhHHHHHHHHHHHHHHHHhhh
Q 014922 371 SLRDNGYQGLFLGGNYVAG---VALGRCVESAYEVASEVSNFLSQ 412 (416)
Q Consensus 371 ~l~~~~~~~l~~aG~~~~g---~~~~~ai~sg~~aA~~il~~l~~ 412 (416)
...+ |++|++++|||..- ..++.|..||++||+.|++.+..
T Consensus 422 ~~~T-pv~N~~laGd~~~~~~~~smE~A~~sGl~AA~~v~~~~~~ 465 (485)
T COG3349 422 EQKT-PIPNLLLAGDYTKQPYLGSMEGATLSGLLAANAILDNLGH 465 (485)
T ss_pred CCCC-CccchhhccceeecCCcCccchhhhhHHHHHHHHHHhhhh
Confidence 3445 78999999999752 34678999999999999987653
No 35
>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1.8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process
Probab=98.88 E-value=2e-07 Score=87.58 Aligned_cols=118 Identities=19% Similarity=0.275 Sum_probs=86.8
Q ss_pred CCCcHHHHHHHh-hCHHHHHHhhhhhhcccccCCcchhhHHHhhHHHHHHHHhcCChHHHHHHHHHhhccCCCCCCCCCC
Q 014922 69 HEESVEEFVRRN-LGDEVFERLIEPFCSGVYAGDPSKLSMKAAFGKVWKLEQTGGSIIGGTFKAIQEKNKAPKQPRDPRL 147 (416)
Q Consensus 69 ~~~s~~~~l~~~-~g~~~~~~~~~p~~~~~~~~~~~~lS~~~~~~~~~~~~~~~gs~~~~~~~~~~~~~~~~~~~~~~~~ 147 (416)
-..|.+||+.+. +++.+.+.++.+.++..|+.+. ++++...+- |++
T Consensus 68 t~~t~~e~L~~~gi~~~fi~Elv~a~tRvNYgQ~~-~i~a~~G~v----------Sla---------------------- 114 (368)
T PF07156_consen 68 TKVTGEEYLKENGISERFINELVQAATRVNYGQNV-NIHAFAGLV----------SLA---------------------- 114 (368)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHhheEeeccccc-chhhhhhhe----------eee----------------------
Confidence 457899999874 6899999999999999999873 555432211 110
Q ss_pred CCCCCCceeehhhhHhHHHHHHHHHhccceecCceeeeE-EEcCCCc--eEEEEeCCCCceEEecCEEEEcCChHHHH
Q 014922 148 PKPKGQTVGSFRKGLTMLPEAISKRLGSKVKLSWKLSGV-KKLDSGE--YSLTYETPEGLVSLRSRSVVMTVPSYVAS 222 (416)
Q Consensus 148 ~~~~~~~~~~~~gG~~~l~~~L~~~lg~~I~l~~~V~~I-~~~~~~~--v~v~~~~~~g~~~~~ad~VI~a~p~~~~~ 222 (416)
. .....+.++||..++++.|.+.-+.+| ++++|++| ...+++. ++|++.+..+.....+|.||+|+|.....
T Consensus 115 -~-a~~gl~sV~GGN~qI~~~ll~~S~A~v-l~~~Vt~I~~~~~~~~~~y~v~~~~~~~~~~~~yD~VVIAtPl~~~~ 189 (368)
T PF07156_consen 115 -G-ATGGLWSVEGGNWQIFEGLLEASGANV-LNTTVTSITRRSSDGYSLYEVTYKSSSGTESDEYDIVVIATPLQQSF 189 (368)
T ss_pred -e-ccCCceEecCCHHHHHHHHHHHccCcE-ecceeEEEEeccCCCceeEEEEEecCCCCccccCCEEEECCCccccc
Confidence 0 013468999999999999999998999 99999999 4444442 56776544443345689999999996544
No 36
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=98.33 E-value=5.6e-06 Score=79.30 Aligned_cols=182 Identities=18% Similarity=0.232 Sum_probs=107.4
Q ss_pred hhHHHhcCCCCceeeCCCCCCceEEECCeeeeCCCCCCCCccccCCChhhHHHhhh--cccC-CCC-----CC--CCCCC
Q 014922 2 LKMVVDSGLKDDLVLGDPNAPRFVLWNGRLRPVPSSPTDLPIFDLMSIGGKIRAGL--GALG-LRP-----PP--PGHEE 71 (416)
Q Consensus 2 ~~l~~elGl~~~l~~~~~~~~~~i~~~g~~~~~p~~~~~~~~~~~l~~~~~lr~~~--~~~~-~~~-----~~--~~~~~ 71 (416)
.+++-+-|+...+.+..- ...|+|.+|+++++|.+-.+++..+.+++.+|-+++. .... +.. +. ...+.
T Consensus 88 V~lLi~S~V~rYLEFk~V-~~~~v~~~~~l~kVP~sr~dvf~s~~lsl~eKR~lmkFl~~v~~~~~~~~~~~~~~~~~~~ 166 (438)
T PF00996_consen 88 VKLLISSGVTRYLEFKAV-DGSYVYKNGKLHKVPCSREDVFKSKLLSLFEKRRLMKFLKFVANYEEDDPSTHKGLDPEKK 166 (438)
T ss_dssp HHHHHHCTGGGGSEEEEE-SEEEEEETTEEEE--SSHHHHHC-TTS-HHHHHHHHHHHHHHHHGCTTBGGGSTTG-TTTS
T ss_pred HHHHHhCCcccceEEEEc-ceeEEEeCCEEeeCCCCHHHhhcCCCccHHHHHHHHHHHHHHhhcccCCcchhhccccccc
Confidence 456667777776666443 2478899999999999876677788999888755331 1110 111 11 13478
Q ss_pred cHHHHHHHhhC-HHHHHHhhhhhhcccccCCc-chhhHHHhhHHHHHHHHhcCChHHHHHHHHHhhccCCCCCCCCCCCC
Q 014922 72 SVEEFVRRNLG-DEVFERLIEPFCSGVYAGDP-SKLSMKAAFGKVWKLEQTGGSIIGGTFKAIQEKNKAPKQPRDPRLPK 149 (416)
Q Consensus 72 s~~~~l~~~~g-~~~~~~~~~p~~~~~~~~~~-~~lS~~~~~~~~~~~~~~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (416)
++.|++.. ++ ++....++...++ ++..+. .+-++...+.+++.+...-| .
T Consensus 167 ~~~e~~~~-f~L~~~~~~~i~haia-L~~~~~~~~~p~~~~l~ri~~yl~Slg--------------------------r 218 (438)
T PF00996_consen 167 TFQELLKK-FGLSENLIDFIGHAIA-LSLDDSYLTEPAREGLERIKLYLSSLG--------------------------R 218 (438)
T ss_dssp BHHHHHHH-TTS-HHHHHHHHHHTS--SSSSGGGGSBSHHHHHHHHHHHHHHC--------------------------C
T ss_pred cHHHHHHh-cCCCHHHHHHHHHhhh-hccCcccccccHHHHHHHHHHHHHHHh--------------------------c
Confidence 99999975 54 3334344332222 222222 12345667777775432222 1
Q ss_pred CCCCceeehhhhHhHHHHHHHHHh---ccceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEc
Q 014922 150 PKGQTVGSFRKGLTMLPEAISKRL---GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMT 215 (416)
Q Consensus 150 ~~~~~~~~~~gG~~~l~~~L~~~l---g~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a 215 (416)
++...+.++..|.+.|++++.+.. |+...||++|.+|..++++ ..+.+. .+| +++.|+.||+.
T Consensus 219 yG~sPfLyP~YG~GELpQ~FcRl~AV~GG~Y~L~~~i~~i~~~~~g-~~~gV~-s~g-e~v~~k~vI~d 284 (438)
T PF00996_consen 219 YGKSPFLYPLYGLGELPQAFCRLSAVYGGTYMLNRPIDEIVVDEDG-KVIGVK-SEG-EVVKAKKVIGD 284 (438)
T ss_dssp CSSSSEEEETT-TTHHHHHHHHHHHHTT-EEESS--EEEEEEETTT-EEEEEE-ETT-EEEEESEEEEE
T ss_pred cCCCCEEEEccCCccHHHHHHHHhhhcCcEEEeCCccceeeeecCC-eEEEEe-cCC-EEEEcCEEEEC
Confidence 233456788889999999998764 7899999999999986655 333332 366 48999999964
No 37
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=3.2e-05 Score=71.22 Aligned_cols=185 Identities=14% Similarity=0.115 Sum_probs=113.2
Q ss_pred hhHHHhcCCCCceeeCCCCCCceEEECCeeeeCCCCCCCCccccCCChhhHHHhhhccc---CCC-----CCCC--CCCC
Q 014922 2 LKMVVDSGLKDDLVLGDPNAPRFVLWNGRLRPVPSSPTDLPIFDLMSIGGKIRAGLGAL---GLR-----PPPP--GHEE 71 (416)
Q Consensus 2 ~~l~~elGl~~~l~~~~~~~~~~i~~~g~~~~~p~~~~~~~~~~~l~~~~~lr~~~~~~---~~~-----~~~~--~~~~ 71 (416)
++++-+-|+..-|.+..- .++++|.+|+++++|.+...++.+++|+.-.|=|.+.-.. .+. .|.+ ....
T Consensus 88 vk~Li~T~V~~YL~fk~i-~gsfv~~~~k~~KVP~t~~Ea~~s~lmgl~eKrr~~kFl~~V~n~~e~~~~~~~~~~~~k~ 166 (440)
T KOG1439|consen 88 VKILIHTGVTRYLEFKSI-SGSFVYKKGKIYKVPATEAEALTSPLMGLFEKRRVMKFLKFVLNYDEEDPKTWQGYDLSKD 166 (440)
T ss_pred HHHHHHhchhhheEEEee-cceEEEECCeEEECCCCHHHHhcCCccchhHHHHHHHHHHHHhhhhhhccccccccccccc
Confidence 345555666655555333 3579999999999999877777888998766644331110 011 1222 2344
Q ss_pred cHHHHHHHhhCHHHHHHhhhhhhcccccCCcchhhHHHhhHHHHHHHHhcCChHHHHHHHHHhhccCCCCCCCCCCCCCC
Q 014922 72 SVEEFVRRNLGDEVFERLIEPFCSGVYAGDPSKLSMKAAFGKVWKLEQTGGSIIGGTFKAIQEKNKAPKQPRDPRLPKPK 151 (416)
Q Consensus 72 s~~~~l~~~~g~~~~~~~~~p~~~~~~~~~~~~lS~~~~~~~~~~~~~~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (416)
|+.+++..-+-.+-...+....+....-.+.-+..+.-.+.++..+.. |+. .+.
T Consensus 167 tm~~~~~~~~l~~~~~~f~gh~~al~~dd~~ld~p~~~~~~ri~~Y~~---S~~-----------------------~yg 220 (440)
T KOG1439|consen 167 TMREFLGKFGLLEGTIDFIGHAIALLCDDSYLDQPAKETLERILLYVR---SFA-----------------------RYG 220 (440)
T ss_pred hHHHHHHHhcccccceeeeeeeeEEEecchhccCccHHHHHHHHHHHH---HHh-----------------------hcC
Confidence 899998874322222233333333333344455566666777764422 220 122
Q ss_pred CCceeehhhhHhHHHHHHHHHh---ccceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcC
Q 014922 152 GQTVGSFRKGLTMLPEAISKRL---GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTV 216 (416)
Q Consensus 152 ~~~~~~~~gG~~~l~~~L~~~l---g~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~ 216 (416)
.....++..|.+.|++.+++.. |+...||.++.+|..+.++ ..+.+..+++ ...+..||+-.
T Consensus 221 ~~~ylyP~yGlgEL~QgFaRlsAvyGgTYMLn~pi~ei~~~~~g-k~igvk~~~~--v~~~k~vi~dp 285 (440)
T KOG1439|consen 221 KSPYLYPLYGLGELPQGFARLSAVYGGTYMLNKPIDEINETKNG-KVIGVKSGGE--VAKCKKVICDP 285 (440)
T ss_pred CCcceecccCcchhhHHHHHHhhccCceeecCCceeeeeccCCc-cEEEEecCCc--eeecceEEecC
Confidence 3346789999999999999864 7899999999999996555 4555443333 66778777653
No 38
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=97.82 E-value=0.00045 Score=68.30 Aligned_cols=144 Identities=14% Similarity=0.046 Sum_probs=86.8
Q ss_pred CCChhhHHHhhhcccCCCCCCCCCCCcHHHHHHHhhCHHHHHHhhhhhhcccccCCcchhhHHHhhHHHHHHHHhcCChH
Q 014922 46 LMSIGGKIRAGLGALGLRPPPPGHEESVEEFVRRNLGDEVFERLIEPFCSGVYAGDPSKLSMKAAFGKVWKLEQTGGSII 125 (416)
Q Consensus 46 ~l~~~~~lr~~~~~~~~~~~~~~~~~s~~~~l~~~~g~~~~~~~~~p~~~~~~~~~~~~lS~~~~~~~~~~~~~~~gs~~ 125 (416)
.+++..+.|..+..+.+.+...+++.|++||+.++|-......+|++++ +.. ...||..+..++.++......+
T Consensus 138 ~~~L~~k~r~~Ll~l~l~~e~~Ld~~tI~d~f~~~Ff~t~Fw~~w~t~F----aF~-~whSA~E~rry~~rf~~~~~~l- 211 (576)
T PRK13977 138 KFGLSKKDRKELLKLLLTPEEKLDDKTIEDWFSPEFFETNFWYYWRTMF----AFE-KWHSALEMRRYMHRFIHHIGGL- 211 (576)
T ss_pred CCCCCHHHHHHHHHHhccCHHHhCCcCHHHHHhhcCchhHHHHHHHHHH----CCc-hhhHHHHHHHHHHHHHHhhccC-
Confidence 4444455553332222444455899999999999887777778888773 333 7889998888887653222211
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCCCCCCceeehhhhHhHHHHHHHHHh---ccceecCceeeeEEEc-CC--Cce-EEEE
Q 014922 126 GGTFKAIQEKNKAPKQPRDPRLPKPKGQTVGSFRKGLTMLPEAISKRL---GSKVKLSWKLSGVKKL-DS--GEY-SLTY 198 (416)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~L~~~l---g~~I~l~~~V~~I~~~-~~--~~v-~v~~ 198 (416)
. ...+ -.+..-.=+.+|+..|.+.| |++|++|++|++|..+ ++ +.| .|.+
T Consensus 212 ----~------------------~~s~-l~ft~ynqyeSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~ 268 (576)
T PRK13977 212 ----P------------------DLSG-LKFTKYNQYESLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHL 268 (576)
T ss_pred ----C------------------cccc-ccCCCCCchhHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEE
Confidence 0 0001 00111112578888888877 6799999999999985 22 322 2444
Q ss_pred eCCCCc---eEEecCEEEEcCCh
Q 014922 199 ETPEGL---VSLRSRSVVMTVPS 218 (416)
Q Consensus 199 ~~~~g~---~~~~ad~VI~a~p~ 218 (416)
..++.. .....|.||+|+--
T Consensus 269 ~~~~~~~~I~l~~~DlVivTnGs 291 (576)
T PRK13977 269 TRNGKEETIDLTEDDLVFVTNGS 291 (576)
T ss_pred EeCCceeEEEecCCCEEEEeCCc
Confidence 321111 23467999998644
No 39
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=97.13 E-value=0.017 Score=52.19 Aligned_cols=154 Identities=19% Similarity=0.202 Sum_probs=97.2
Q ss_pred EECCeeeeCCCCCCCCccccCCC---hhhHHHhhhcccCCCCCCCCCCCcHHHHHHHhhCHHHHHHhhhhhhcccccCCc
Q 014922 26 LWNGRLRPVPSSPTDLPIFDLMS---IGGKIRAGLGALGLRPPPPGHEESVEEFVRRNLGDEVFERLIEPFCSGVYAGDP 102 (416)
Q Consensus 26 ~~~g~~~~~p~~~~~~~~~~~l~---~~~~lr~~~~~~~~~~~~~~~~~s~~~~l~~~~g~~~~~~~~~p~~~~~~~~~~ 102 (416)
+++|+.+++|-++..+. .+++ .++.++.+...... .....+-.+++|=..+..|+.+++.++.++..+.||.+|
T Consensus 87 ~~ng~~~~lP~nl~ti~--ql~G~~~~p~~a~~~i~~~~~-~~~~~~~q~~ee~ais~vg~~LY~~f~kgYT~KQWG~~p 163 (374)
T COG0562 87 LVNGQLYPLPFNLNTIN--QLFGKNFTPDEARKFIEEQAA-EIDIAEPQNLEEQAISLVGRDLYEAFFKGYTEKQWGLDP 163 (374)
T ss_pred EECCeeeeccccHHHHH--HHhCccCCHHHHHHHHHHhhc-cccccchhhhhhHHHHHHHHHHHHHHhccccHHHhCCCh
Confidence 57999999997765432 1222 12334444333211 111235567888888889999999999999999999999
Q ss_pred chhhHHHhhHHHHHHHHhcCChHHHHHHHHHhhccCCCCCCCCCCCCCCCCceeehhhhHhHHHHHHHHHhccceecCce
Q 014922 103 SKLSMKAAFGKVWKLEQTGGSIIGGTFKAIQEKNKAPKQPRDPRLPKPKGQTVGSFRKGLTMLPEAISKRLGSKVKLSWK 182 (416)
Q Consensus 103 ~~lS~~~~~~~~~~~~~~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~L~~~lg~~I~l~~~ 182 (416)
++|.+.. +.++.- ... +|.+. +...-..-+++|+..+.++|++.=.-+|+|||.
T Consensus 164 ~eLpasv-i~RvPV---r~~--------------------~dn~Y--F~d~yQGlP~~GYT~~~~kMl~hp~I~V~Lntd 217 (374)
T COG0562 164 KELPASV-IKRLPV---RLN--------------------FDNRY--FSDTYQGLPKDGYTAMFEKMLDHPNIDVRLNTD 217 (374)
T ss_pred HHCCHHH-hcccce---EEc--------------------ccCcc--cCcccccCccccHHHHHHHHhcCCCceEEecCc
Confidence 9999864 333320 000 01110 112234578999999999999854448999987
Q ss_pred eeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCChHHHH
Q 014922 183 LSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYVAS 222 (416)
Q Consensus 183 V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~~~~~ 222 (416)
-..|..... ...+..||-|.|....=
T Consensus 218 ~~~~~~~~~--------------~~~~~~VvytG~iD~~F 243 (374)
T COG0562 218 FFDVKDQLR--------------AIPFAPVVYTGPIDAYF 243 (374)
T ss_pred HHHHhhhhc--------------ccCCCceEEecchHhhh
Confidence 766543211 13456888888876543
No 40
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=97.05 E-value=0.054 Score=52.32 Aligned_cols=63 Identities=13% Similarity=0.148 Sum_probs=46.7
Q ss_pred hhhHhHHHHHHHHHhccceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCCh-HHHHhc
Q 014922 159 RKGLTMLPEAISKRLGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPS-YVASSL 224 (416)
Q Consensus 159 ~gG~~~l~~~L~~~lg~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~-~~~~~l 224 (416)
+.-+..+....++..|.+++.++.|+.+..++++ +.+.... ++ .+++|+.||.|.-+ ..+.+.
T Consensus 94 R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~-~~~~~~~-~~-~e~~a~~vI~AdG~~s~l~~~ 157 (396)
T COG0644 94 RAKFDKWLAERAEEAGAELYPGTRVTGVIREDDG-VVVGVRA-GD-DEVRAKVVIDADGVNSALARK 157 (396)
T ss_pred hHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCc-EEEEEEc-CC-EEEEcCEEEECCCcchHHHHH
Confidence 4557777777777788999999999999999887 5554432 33 48999999999854 344443
No 41
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=0.003 Score=57.97 Aligned_cols=177 Identities=15% Similarity=0.211 Sum_probs=109.5
Q ss_pred hhHHHhcCCCCceeeCCCCCCceEEECCeeeeCCCCCCCCccccCCChhhHHHhhhcccCC-C-------CCCC-CCCCc
Q 014922 2 LKMVVDSGLKDDLVLGDPNAPRFVLWNGRLRPVPSSPTDLPIFDLMSIGGKIRAGLGALGL-R-------PPPP-GHEES 72 (416)
Q Consensus 2 ~~l~~elGl~~~l~~~~~~~~~~i~~~g~~~~~p~~~~~~~~~~~l~~~~~lr~~~~~~~~-~-------~~~~-~~~~s 72 (416)
++++-+-|+..-|.+..- .++++|.+|+++++|.+-..+..+++|+.-.|-+.+ ..+.+ . .+.+ ..+.+
T Consensus 89 ~~iLi~t~v~~YLefk~i-~~~~~~~~~k~~kVP~ne~ei~~s~~lsL~eKr~vm-rFl~~V~n~~~~~~~~~~~~e~k~ 166 (434)
T COG5044 89 LKILIETGVTEYLEFKQI-SGSFLYRPGKIYKVPYNEAEIFTSPLLSLFEKRRVM-RFLKWVSNYAEQKSTLQELYESKD 166 (434)
T ss_pred HHHHHHhChHhheeeeec-cccEEecCCcEEECCccHHhhhcCCCcchhhHHHHH-HHHHHHHhHHhhhhhchhhhhccc
Confidence 456666677665555333 357889999999999987777778888876664332 11111 0 1112 23466
Q ss_pred HHHHHHHhhCH--HHHHHhhhhhhcccccCCcchhhHHHhhHHHHHHHHhcCChHHHHHHHHHhhccCCCCCCCCCCCCC
Q 014922 73 VEEFVRRNLGD--EVFERLIEPFCSGVYAGDPSKLSMKAAFGKVWKLEQTGGSIIGGTFKAIQEKNKAPKQPRDPRLPKP 150 (416)
Q Consensus 73 ~~~~l~~~~g~--~~~~~~~~p~~~~~~~~~~~~lS~~~~~~~~~~~~~~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (416)
+.+++...||- ...+.+...++... + -+..++-++.++.++.+..+ .+
T Consensus 167 ~~~~~~ekf~L~~~~~e~i~~~i~l~l---d-l~~p~re~~erIl~Y~~Sf~--------------------------~y 216 (434)
T COG5044 167 TMEFLFEKFGLSGATEEFIGHGIALSL---D-LDIPAREALERILRYMRSFG--------------------------DY 216 (434)
T ss_pred HHHHHHHHHccCcchhhhhhhhhhhhc---c-ccCCchHHHHHHHHHHHhhc--------------------------cc
Confidence 88888888762 22323323332222 2 45566667777765433222 12
Q ss_pred CCCceeehhhhHhHHHHHHHHHh---ccceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEc
Q 014922 151 KGQTVGSFRKGLTMLPEAISKRL---GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMT 215 (416)
Q Consensus 151 ~~~~~~~~~gG~~~l~~~L~~~l---g~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a 215 (416)
......+++-|.+.|++.+++.. |+.+.||+++.+|..+++ | .++. .++ .++.|..||+.
T Consensus 217 g~~pyLyp~YGl~El~QGFaRssav~GgtymLn~~i~ein~tk~--v-~~v~-~~~-~~~ka~KiI~~ 279 (434)
T COG5044 217 GKSPYLYPRYGLGELSQGFARSSAVYGGTYMLNQAIDEINETKD--V-ETVD-KGS-LTQKAGKIISS 279 (434)
T ss_pred CCCcceeeccCchhhhHHHHHhhhccCceeecCcchhhhccccc--e-eeee-cCc-ceeecCcccCC
Confidence 22345688888999999999874 689999999999988765 3 2322 233 37778887764
No 42
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=96.69 E-value=0.1 Score=49.04 Aligned_cols=62 Identities=18% Similarity=0.252 Sum_probs=44.7
Q ss_pred eeehhhh---HhHHHHHHHHHh---ccceecCceeeeEEEcCCCceE-EEEeCCCCceEEecCEEEEcCChHHH
Q 014922 155 VGSFRKG---LTMLPEAISKRL---GSKVKLSWKLSGVKKLDSGEYS-LTYETPEGLVSLRSRSVVMTVPSYVA 221 (416)
Q Consensus 155 ~~~~~gG---~~~l~~~L~~~l---g~~I~l~~~V~~I~~~~~~~v~-v~~~~~~g~~~~~ad~VI~a~p~~~~ 221 (416)
++.+.+| ...+...|++.+ |++|+.+++|++|+..+++ |. |. +++| ++.||.||+|+.+..-
T Consensus 126 ~~~~~~g~v~p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~~~-~~~v~--~~~g--~~~a~~vV~a~G~~~~ 194 (337)
T TIGR02352 126 VFYPDDAHVDPRALLKALEKALEKLGVEIIEHTEVQHIEIRGEK-VTAIV--TPSG--DVQADQVVLAAGAWAG 194 (337)
T ss_pred EEcCCCceEChHHHHHHHHHHHHHcCCEEEccceEEEEEeeCCE-EEEEE--cCCC--EEECCEEEEcCChhhh
Confidence 3444455 355667776654 5799999999999987665 53 43 5667 7899999999987543
No 43
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=96.53 E-value=0.077 Score=50.94 Aligned_cols=62 Identities=13% Similarity=0.169 Sum_probs=45.2
Q ss_pred eeehhhhH---hHHHHHHHHHh--ccceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCChHH
Q 014922 155 VGSFRKGL---TMLPEAISKRL--GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYV 220 (416)
Q Consensus 155 ~~~~~gG~---~~l~~~L~~~l--g~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~~~ 220 (416)
++.+.+|. ..+..+|++.+ |++|+.+++|++|+.++++ |.|+ +.+|. .+.||.||+|+.+..
T Consensus 124 l~~~~~g~idp~~~~~~l~~~~~~G~~i~~~~~V~~i~~~~~~-~~v~--t~~g~-~~~a~~vV~a~G~~~ 190 (381)
T TIGR03197 124 LFFPQGGWLSPPQLCRALLAHAGIRLTLHFNTEITSLERDGEG-WQLL--DANGE-VIAASVVVLANGAQA 190 (381)
T ss_pred eEeCCCcccChHHHHHHHHhccCCCcEEEeCCEEEEEEEcCCe-EEEE--eCCCC-EEEcCEEEEcCCccc
Confidence 34444553 45666666654 5789999999999987776 7775 45673 589999999987753
No 44
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=96.25 E-value=0.013 Score=54.75 Aligned_cols=61 Identities=23% Similarity=0.352 Sum_probs=51.7
Q ss_pred CceeehhhhHhHHHHHHHHHh---ccceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCC
Q 014922 153 QTVGSFRKGLTMLPEAISKRL---GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVP 217 (416)
Q Consensus 153 ~~~~~~~gG~~~l~~~L~~~l---g~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p 217 (416)
.++|......+.++++|.+++ +++|+++++|.+|+.++.+ .+|. +.+|+ ++.||.+|+|+-
T Consensus 101 Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~-f~l~--t~~g~-~i~~d~lilAtG 164 (408)
T COG2081 101 GRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSG-FRLD--TSSGE-TVKCDSLILATG 164 (408)
T ss_pred ceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCce-EEEE--cCCCC-EEEccEEEEecC
Confidence 456666688999999999987 5799999999999998865 7776 57885 799999999986
No 45
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=96.05 E-value=1.8 Score=43.81 Aligned_cols=52 Identities=25% Similarity=0.376 Sum_probs=39.3
Q ss_pred ccceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCCh-HHHHhccC
Q 014922 174 GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPS-YVASSLLR 226 (416)
Q Consensus 174 g~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~-~~~~~ll~ 226 (416)
+.+|+++++|++++.++++ +++++.+.+|..+++||.||.|... ..+++.+.
T Consensus 140 ~v~v~~~~~v~~i~~~~~~-v~v~~~~~~g~~~i~ad~vVgADG~~S~vR~~lg 192 (547)
T PRK08132 140 NIDLRWKNKVTGLEQHDDG-VTLTVETPDGPYTLEADWVIACDGARSPLREMLG 192 (547)
T ss_pred CcEEEeCCEEEEEEEcCCE-EEEEEECCCCcEEEEeCEEEECCCCCcHHHHHcC
Confidence 4589999999999998886 8877655555446899999999865 34555543
No 46
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=96.03 E-value=0.32 Score=47.21 Aligned_cols=52 Identities=15% Similarity=0.303 Sum_probs=39.7
Q ss_pred HHHHHHHHHh---ccceecCceeeeEEEcCCCceE-EEEeCCCCceEEecCEEEEcCChHH
Q 014922 164 MLPEAISKRL---GSKVKLSWKLSGVKKLDSGEYS-LTYETPEGLVSLRSRSVVMTVPSYV 220 (416)
Q Consensus 164 ~l~~~L~~~l---g~~I~l~~~V~~I~~~~~~~v~-v~~~~~~g~~~~~ad~VI~a~p~~~ 220 (416)
.+..+|++.+ |++|+++++|++|+.++++ +. |+ +++| ++.||+||+|+.+..
T Consensus 202 ~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~-~~~v~--t~~~--~~~a~~VV~a~G~~~ 257 (416)
T PRK00711 202 LFTQRLAAMAEQLGVKFRFNTPVDGLLVEGGR-ITGVQ--TGGG--VITADAYVVALGSYS 257 (416)
T ss_pred HHHHHHHHHHHHCCCEEEcCCEEEEEEecCCE-EEEEE--eCCc--EEeCCEEEECCCcch
Confidence 5666666554 6799999999999987765 54 43 4555 789999999998753
No 47
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=95.96 E-value=1.3 Score=42.52 Aligned_cols=62 Identities=13% Similarity=0.119 Sum_probs=46.8
Q ss_pred HhHHHHHHHHHh---c-cceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCCh-HHHHhccC
Q 014922 162 LTMLPEAISKRL---G-SKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPS-YVASSLLR 226 (416)
Q Consensus 162 ~~~l~~~L~~~l---g-~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~-~~~~~ll~ 226 (416)
...|-+.|.+.+ + .+++.++.|+.++.++++ ++|++.. +|+ +++||.||-|=-. +.+++.+.
T Consensus 103 ~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~-v~v~l~~-dG~-~~~a~llVgADG~~S~vR~~~~ 169 (387)
T COG0654 103 RSDLLNALLEAARALPNVTLRFGAEVEAVEQDGDG-VTVTLSF-DGE-TLDADLLVGADGANSAVRRAAG 169 (387)
T ss_pred hHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCc-eEEEEcC-CCc-EEecCEEEECCCCchHHHHhcC
Confidence 445666666665 2 489999999999999887 8888754 785 8999999998764 44555544
No 48
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=95.84 E-value=0.55 Score=45.11 Aligned_cols=58 Identities=17% Similarity=0.214 Sum_probs=40.2
Q ss_pred HHHHHHHHHh---ccceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCChH-HHHhcc
Q 014922 164 MLPEAISKRL---GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSY-VASSLL 225 (416)
Q Consensus 164 ~l~~~L~~~l---g~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~~-~~~~ll 225 (416)
.+.+.|.+.+ ++..+++++|++|+.++++ ++|++ .+|. +++||.||.|.-.. .+++.+
T Consensus 112 ~l~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~-~~v~~--~~g~-~~~a~~vI~AdG~~S~vr~~~ 173 (388)
T PRK07494 112 LLNRALEARVAELPNITRFGDEAESVRPREDE-VTVTL--ADGT-TLSARLVVGADGRNSPVREAA 173 (388)
T ss_pred HHHHHHHHHHhcCCCcEEECCeeEEEEEcCCe-EEEEE--CCCC-EEEEeEEEEecCCCchhHHhc
Confidence 3555555544 3345889999999988886 88874 4564 79999999887653 344433
No 49
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=95.83 E-value=0.48 Score=46.02 Aligned_cols=61 Identities=18% Similarity=0.090 Sum_probs=42.4
Q ss_pred HHHHHHHHHh----ccceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCCh-HHHHhcc
Q 014922 164 MLPEAISKRL----GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPS-YVASSLL 225 (416)
Q Consensus 164 ~l~~~L~~~l----g~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~-~~~~~ll 225 (416)
.+.+.|.+.+ +.+|+++++|++|+.++++ +.|++.+.++..+++||.||.|--. ..+++.+
T Consensus 122 ~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~-~~v~~~~~~~~~~i~adlvIgADG~~S~vR~~~ 187 (415)
T PRK07364 122 VLLEALQEFLQSCPNITWLCPAEVVSVEYQQDA-ATVTLEIEGKQQTLQSKLVVAADGARSPIRQAA 187 (415)
T ss_pred HHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCe-eEEEEccCCcceEEeeeEEEEeCCCCchhHHHh
Confidence 4556665554 3578999999999988776 8887643333346899999988754 3444443
No 50
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=95.72 E-value=0.69 Score=44.55 Aligned_cols=57 Identities=12% Similarity=0.177 Sum_probs=40.8
Q ss_pred HHHHHHHHHh---ccceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCChH-HHHhc
Q 014922 164 MLPEAISKRL---GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSY-VASSL 224 (416)
Q Consensus 164 ~l~~~L~~~l---g~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~~-~~~~l 224 (416)
.+.+.|.+.+ +.+|+++++|++|+.++++ ++|+. .+|. ++++|.||.|.-.. .+.+.
T Consensus 114 ~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~-v~v~~--~~g~-~~~a~~vV~AdG~~S~vr~~ 174 (392)
T PRK08773 114 LLVDRLWAALHAAGVQLHCPARVVALEQDADR-VRLRL--DDGR-RLEAALAIAADGAASTLREL 174 (392)
T ss_pred HHHHHHHHHHHhCCCEEEcCCeEEEEEecCCe-EEEEE--CCCC-EEEeCEEEEecCCCchHHHh
Confidence 3445554443 5689999999999988776 88764 4564 78999999997653 34444
No 51
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=95.63 E-value=0.028 Score=53.08 Aligned_cols=62 Identities=16% Similarity=0.251 Sum_probs=48.1
Q ss_pred ceeehhhh---HhHHHHHHHHHh---ccceecCceeeeEEEcCCCceE-EEEeCCCCceEEecCEEEEcCChHH
Q 014922 154 TVGSFRKG---LTMLPEAISKRL---GSKVKLSWKLSGVKKLDSGEYS-LTYETPEGLVSLRSRSVVMTVPSYV 220 (416)
Q Consensus 154 ~~~~~~gG---~~~l~~~L~~~l---g~~I~l~~~V~~I~~~~~~~v~-v~~~~~~g~~~~~ad~VI~a~p~~~ 220 (416)
.++...+| ...+.++|.+.+ |++|+.+++|++|..++++ |+ |. +.+| .+.||+||+|+.+..
T Consensus 135 ~~~~~~~g~i~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~-v~gv~--~~~g--~i~ad~vV~a~G~~s 203 (358)
T PF01266_consen 135 GVFFPEGGVIDPRRLIQALAAEAQRAGVEIRTGTEVTSIDVDGGR-VTGVR--TSDG--EIRADRVVLAAGAWS 203 (358)
T ss_dssp EEEETTEEEEEHHHHHHHHHHHHHHTT-EEEESEEEEEEEEETTE-EEEEE--ETTE--EEEECEEEE--GGGH
T ss_pred hhcccccccccccchhhhhHHHHHHhhhhccccccccchhhcccc-ccccc--cccc--ccccceeEecccccc
Confidence 35677788 778888888765 6799999999999999887 76 76 5677 599999999987754
No 52
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=95.46 E-value=0.036 Score=47.83 Aligned_cols=53 Identities=17% Similarity=0.414 Sum_probs=38.3
Q ss_pred HhHHHHHHHHHhccceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCCh
Q 014922 162 LTMLPEAISKRLGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPS 218 (416)
Q Consensus 162 ~~~l~~~L~~~lg~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~ 218 (416)
+....+.+++..+.+|++++.|++|++.+++ |+|++ .++ ++++||+||+|+-.
T Consensus 84 v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~-w~v~~--~~~-~~~~a~~VVlAtG~ 136 (203)
T PF13738_consen 84 VLDYLQEYAERFGLEIRFNTRVESVRRDGDG-WTVTT--RDG-RTIRADRVVLATGH 136 (203)
T ss_dssp HHHHHHHHHHHTTGGEETS--EEEEEEETTT-EEEEE--TTS--EEEEEEEEE---S
T ss_pred HHHHHHHHHhhcCcccccCCEEEEEEEeccE-EEEEE--Eec-ceeeeeeEEEeeec
Confidence 4456667777777789999999999999888 99985 456 48899999999874
No 53
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=95.41 E-value=0.8 Score=43.86 Aligned_cols=58 Identities=17% Similarity=0.194 Sum_probs=42.4
Q ss_pred HHHHHHHHHh----ccceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCChH-HHHhcc
Q 014922 164 MLPEAISKRL----GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSY-VASSLL 225 (416)
Q Consensus 164 ~l~~~L~~~l----g~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~~-~~~~ll 225 (416)
.+.+.|.+.+ +.+++++++|++|+.++++ ++|+. .+|. +++||.||.|.... .+.+.+
T Consensus 106 ~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~-~~v~~--~~g~-~~~ad~vV~AdG~~S~vr~~l 168 (382)
T TIGR01984 106 DLGQALLSRLALLTNIQLYCPARYKEIIRNQDY-VRVTL--DNGQ-QLRAKLLIAADGANSKVRELL 168 (382)
T ss_pred HHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCe-EEEEE--CCCC-EEEeeEEEEecCCChHHHHHc
Confidence 4555665544 4579999999999988776 88874 4564 78999999998764 344444
No 54
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=95.37 E-value=1.2 Score=42.49 Aligned_cols=51 Identities=22% Similarity=0.262 Sum_probs=38.0
Q ss_pred HHHHHHHHHh---c-cceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCCh
Q 014922 164 MLPEAISKRL---G-SKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPS 218 (416)
Q Consensus 164 ~l~~~L~~~l---g-~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~ 218 (416)
.+.+.|.+.+ + .+|+.+++|++|+.++++ +.|+. .+|. ++++|.||.|...
T Consensus 107 ~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~-~~v~~--~~g~-~~~~~~vi~adG~ 161 (385)
T TIGR01988 107 VLQQALWERLQEYPNVTLLCPARVVELPRHSDH-VELTL--DDGQ-QLRARLLVGADGA 161 (385)
T ss_pred HHHHHHHHHHHhCCCcEEecCCeEEEEEecCCe-eEEEE--CCCC-EEEeeEEEEeCCC
Confidence 3455555544 4 689999999999988776 87764 5674 7899999988654
No 55
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=95.20 E-value=2.4 Score=38.63 Aligned_cols=46 Identities=13% Similarity=0.120 Sum_probs=35.4
Q ss_pred HHhccceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCChH
Q 014922 171 KRLGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSY 219 (416)
Q Consensus 171 ~~lg~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~~ 219 (416)
+..+.+++++++|++|..++++ +++.+. .++ .++++|.||.|....
T Consensus 102 ~~~gv~~~~~~~v~~~~~~~~~-~~~~~~-~~~-~~~~a~~vv~a~G~~ 147 (295)
T TIGR02032 102 QEAGAELRLGTTVLDVEIHDDR-VVVIVR-GGE-GTVTAKIVIGADGSR 147 (295)
T ss_pred HHcCCEEEeCcEEeeEEEeCCE-EEEEEc-Ccc-EEEEeCEEEECCCcc
Confidence 3456799999999999988776 777653 233 379999999998764
No 56
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=95.08 E-value=3.1 Score=40.26 Aligned_cols=77 Identities=12% Similarity=0.102 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHHhhhcCCCCEEEeeccCCCCchhHHHHH
Q 014922 319 ESELVEAVDRDLRKMLINPNAKDPLVLGVRVWQQAIPQFLVGHLDLLDAAKSSLRDNGYQGLFLGGNYVAGVALGRCVES 398 (416)
Q Consensus 319 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~w~~~~p~~~~g~~~~~~~~~~~l~~~~~~~l~~aG~~~~g~~~~~ai~s 398 (416)
+.+..+.+++.+.+++|... .. -....|...+|. ++.+...+.. . |.+|+|++..+ .|.|+..+-..
T Consensus 308 ~~~~~~~l~~~~~~~~P~l~--~~--~~~~~w~G~~~~-t~D~~PiIg~------~-~~~gl~~a~G~-~g~G~~~ap~~ 374 (407)
T TIGR01373 308 NLPTLEHVLAAILEMFPILS--RV--RMLRSWGGIVDV-TPDGSPIIGK------T-PLPNLYLNCGW-GTGGFKATPAS 374 (407)
T ss_pred CHHHHHHHHHHHHHhCCCcC--CC--CeEEEecccccc-CCCCCceeCC------C-CCCCeEEEecc-CCcchhhchHH
Confidence 35567778888888886432 11 234668766663 4443332221 1 34799988744 35678888889
Q ss_pred HHHHHHHHHH
Q 014922 399 AYEVASEVSN 408 (416)
Q Consensus 399 g~~aA~~il~ 408 (416)
|+..|+.|+.
T Consensus 375 G~~la~li~~ 384 (407)
T TIGR01373 375 GTVFAHTLAR 384 (407)
T ss_pred HHHHHHHHhC
Confidence 9999998864
No 57
>PRK09126 hypothetical protein; Provisional
Probab=95.08 E-value=1.5 Score=42.15 Aligned_cols=49 Identities=20% Similarity=0.295 Sum_probs=37.0
Q ss_pred hccceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCChH-HHHhcc
Q 014922 173 LGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSY-VASSLL 225 (416)
Q Consensus 173 lg~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~~-~~~~ll 225 (416)
.+.+|+.+++|++++.++++ +.|++ .+|. +++||.||.|.... .+++.+
T Consensus 124 ~g~~i~~~~~v~~~~~~~~~-~~v~~--~~g~-~~~a~~vI~AdG~~S~vr~~~ 173 (392)
T PRK09126 124 DGIELLTGTRVTAVRTDDDG-AQVTL--ANGR-RLTARLLVAADSRFSATRRQL 173 (392)
T ss_pred CCcEEEcCCeEEEEEEcCCe-EEEEE--cCCC-EEEeCEEEEeCCCCchhhHhc
Confidence 35689999999999987776 77765 4564 89999999998763 344443
No 58
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=94.85 E-value=0.08 Score=51.07 Aligned_cols=62 Identities=15% Similarity=0.303 Sum_probs=40.9
Q ss_pred CceeehhhhHhHHHHHHHHHh---ccceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCC
Q 014922 153 QTVGSFRKGLTMLPEAISKRL---GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVP 217 (416)
Q Consensus 153 ~~~~~~~gG~~~l~~~L~~~l---g~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p 217 (416)
..+|....-..++.+.|.+.+ +++|+++++|.+|+..+++.+.|. ++++ ..+.||+||+|+-
T Consensus 99 gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~--~~~~-~~~~a~~vILAtG 163 (409)
T PF03486_consen 99 GRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVK--TKNG-GEYEADAVILATG 163 (409)
T ss_dssp TEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEE--ETTT-EEEEESEEEE---
T ss_pred CEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEee--ccCc-ccccCCEEEEecC
Confidence 345555566888999998765 679999999999999877646776 3344 3899999999975
No 59
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=94.85 E-value=1.8 Score=41.61 Aligned_cols=47 Identities=17% Similarity=0.232 Sum_probs=35.5
Q ss_pred ccceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCChH-HHHhc
Q 014922 174 GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSY-VASSL 224 (416)
Q Consensus 174 g~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~~-~~~~l 224 (416)
+.+|+++++|++|..++++ +.|+. .+|. .+++|.||.|.-.. .+.+.
T Consensus 127 g~~~~~~~~v~~i~~~~~~-~~v~~--~~g~-~~~a~~vI~AdG~~S~vr~~ 174 (395)
T PRK05732 127 GVTLHCPARVANVERTQGS-VRVTL--DDGE-TLTGRLLVAADGSHSALREA 174 (395)
T ss_pred CcEEEcCCEEEEEEEcCCe-EEEEE--CCCC-EEEeCEEEEecCCChhhHHh
Confidence 5689999999999887776 88764 4564 78999999987653 33443
No 60
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=94.77 E-value=3.2 Score=40.04 Aligned_cols=58 Identities=22% Similarity=0.309 Sum_probs=41.4
Q ss_pred HHHHHHHHHh---ccceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCCh-HHHHhcc
Q 014922 164 MLPEAISKRL---GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPS-YVASSLL 225 (416)
Q Consensus 164 ~l~~~L~~~l---g~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~-~~~~~ll 225 (416)
.+.+.|.+.+ +.+|+.+++|++|+.++++ +.|++ .+|. +++||.||.|... ..+.+.+
T Consensus 112 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~-v~v~~--~~g~-~~~ad~vI~AdG~~S~vr~~~ 173 (403)
T PRK07333 112 VLINALRKRAEALGIDLREATSVTDFETRDEG-VTVTL--SDGS-VLEARLLVAADGARSKLRELA 173 (403)
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCE-EEEEE--CCCC-EEEeCEEEEcCCCChHHHHHc
Confidence 3444554443 5689999999999988776 88764 4664 7899999999765 3344443
No 61
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=94.59 E-value=0.13 Score=49.56 Aligned_cols=57 Identities=21% Similarity=0.366 Sum_probs=43.0
Q ss_pred HhHHHHHHHHHh---ccceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCChHH
Q 014922 162 LTMLPEAISKRL---GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYV 220 (416)
Q Consensus 162 ~~~l~~~L~~~l---g~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~~~ 220 (416)
...+..+|++.+ |++|++|++|+.|+..++| +.+. .+.+|+.+++|+.||.+.....
T Consensus 152 ~~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg-~~~~-~~~~g~~~~~ak~Vin~AGl~A 211 (429)
T COG0579 152 PGELTRALAEEAQANGVELRLNTEVTGIEKQSDG-VFVL-NTSNGEETLEAKFVINAAGLYA 211 (429)
T ss_pred HHHHHHHHHHHHHHcCCEEEecCeeeEEEEeCCc-eEEE-EecCCcEEEEeeEEEECCchhH
Confidence 445667777665 6799999999999999886 5543 2566642399999999988754
No 62
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=94.27 E-value=0.13 Score=48.78 Aligned_cols=62 Identities=16% Similarity=0.128 Sum_probs=46.4
Q ss_pred CceeehhhhHhHHHHHHHHHh---ccceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCChH
Q 014922 153 QTVGSFRKGLTMLPEAISKRL---GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSY 219 (416)
Q Consensus 153 ~~~~~~~gG~~~l~~~L~~~l---g~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~~ 219 (416)
..+|...+-.++++++|.+.+ |++|+++++|++| ++++ +.|.+. .++ ..++||+||+|+--.
T Consensus 76 grvfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~~~-~~v~~~-~~~-~~~~a~~vIlAtGG~ 140 (376)
T TIGR03862 76 GRVFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGW--QGGT-LRFETP-DGQ-STIEADAVVLALGGA 140 (376)
T ss_pred CEECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEE--eCCc-EEEEEC-CCc-eEEecCEEEEcCCCc
Confidence 345555677889999999876 5799999999999 3344 777642 222 368999999999753
No 63
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=94.15 E-value=5.6 Score=38.07 Aligned_cols=51 Identities=20% Similarity=0.352 Sum_probs=38.5
Q ss_pred HHHHHHHHh--ccceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCChH
Q 014922 165 LPEAISKRL--GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSY 219 (416)
Q Consensus 165 l~~~L~~~l--g~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~~ 219 (416)
+-+.|.+.+ ++.+++++.|++|+.++++ +.|+ +.+|. +++|+.||-|.++.
T Consensus 89 f~~~l~~~~~~~~~~~~~~~V~~i~~~~~~-~~v~--~~~g~-~i~a~~VvDa~g~~ 141 (374)
T PF05834_consen 89 FYEFLLERAAAGGVIRLNARVTSIEETGDG-VLVV--LADGR-TIRARVVVDARGPS 141 (374)
T ss_pred HHHHHHHHhhhCCeEEEccEEEEEEecCce-EEEE--ECCCC-EEEeeEEEECCCcc
Confidence 444455554 3578999999999998885 6665 35674 89999999998854
No 64
>PRK06185 hypothetical protein; Provisional
Probab=94.12 E-value=5.9 Score=38.26 Aligned_cols=52 Identities=15% Similarity=0.170 Sum_probs=36.9
Q ss_pred ccceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCCh-HHHHhcc
Q 014922 174 GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPS-YVASSLL 225 (416)
Q Consensus 174 g~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~-~~~~~ll 225 (416)
+.+|+.+++|+++..++++.+.|++...+|+.+++||.||.|.-. ..+++.+
T Consensus 123 ~v~i~~~~~v~~~~~~~~~v~~v~~~~~~g~~~i~a~~vI~AdG~~S~vr~~~ 175 (407)
T PRK06185 123 NFTLRMGAEVTGLIEEGGRVTGVRARTPDGPGEIRADLVVGADGRHSRVRALA 175 (407)
T ss_pred CcEEEeCCEEEEEEEeCCEEEEEEEEcCCCcEEEEeCEEEECCCCchHHHHHc
Confidence 468999999999998877522355444556447899999999865 3455554
No 65
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=94.11 E-value=4.5 Score=38.87 Aligned_cols=48 Identities=15% Similarity=0.281 Sum_probs=36.4
Q ss_pred ccceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCCh-HHHHhcc
Q 014922 174 GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPS-YVASSLL 225 (416)
Q Consensus 174 g~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~-~~~~~ll 225 (416)
+.+|+.+++|++|+.++++ ++|++ .+|. +++||.||.|.-. ..+++.+
T Consensus 127 gv~i~~~~~v~~i~~~~~~-~~v~~--~~g~-~~~a~~vI~AdG~~S~vR~~~ 175 (391)
T PRK08020 127 NVTLRCPASLQALQRDDDG-WELTL--ADGE-EIQAKLVIGADGANSQVRQMA 175 (391)
T ss_pred CcEEEcCCeeEEEEEcCCe-EEEEE--CCCC-EEEeCEEEEeCCCCchhHHHc
Confidence 5689999999999988776 88874 4564 7999999999765 3344444
No 66
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=93.91 E-value=1.3 Score=42.94 Aligned_cols=48 Identities=15% Similarity=0.070 Sum_probs=36.9
Q ss_pred ccceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCCh-HHHHhcc
Q 014922 174 GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPS-YVASSLL 225 (416)
Q Consensus 174 g~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~-~~~~~ll 225 (416)
+.+|+++++|++|+.++++ ++|++ .+|+ +++||.||.|--. ..+++.+
T Consensus 126 ~v~v~~~~~v~~i~~~~~~-~~v~~--~~g~-~~~a~lvIgADG~~S~vR~~~ 174 (405)
T PRK08850 126 NVTLLMPARCQSIAVGESE-AWLTL--DNGQ-ALTAKLVVGADGANSWLRRQM 174 (405)
T ss_pred CeEEEcCCeeEEEEeeCCe-EEEEE--CCCC-EEEeCEEEEeCCCCChhHHHc
Confidence 3589999999999988776 88875 4664 8999999999765 4445543
No 67
>PRK10015 oxidoreductase; Provisional
Probab=93.74 E-value=7.4 Score=38.04 Aligned_cols=54 Identities=7% Similarity=0.043 Sum_probs=36.6
Q ss_pred hHhHHHHHHHHHhccceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCCh
Q 014922 161 GLTMLPEAISKRLGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPS 218 (416)
Q Consensus 161 G~~~l~~~L~~~lg~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~ 218 (416)
-+..+....++..|.+|+.+++|+.|..++++ +.+. .+ ++ .+++||.||.|.-.
T Consensus 109 ~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~~~-v~~v-~~-~~-~~i~A~~VI~AdG~ 162 (429)
T PRK10015 109 RLDPWLMEQAEQAGAQFIPGVRVDALVREGNK-VTGV-QA-GD-DILEANVVILADGV 162 (429)
T ss_pred HHHHHHHHHHHHcCCEEECCcEEEEEEEeCCE-EEEE-Ee-CC-eEEECCEEEEccCc
Confidence 34443333344457899999999999887665 5532 12 33 37999999999765
No 68
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=92.45 E-value=1.6 Score=42.63 Aligned_cols=127 Identities=13% Similarity=0.114 Sum_probs=70.5
Q ss_pred CCCCCCCCCCcHHHHHHHhhCHHHHHHhhhhhhcccccCCcchhhHHHhhHHHHHHHHhcCChHHHHHHHHHhhccCCCC
Q 014922 62 LRPPPPGHEESVEEFVRRNLGDEVFERLIEPFCSGVYAGDPSKLSMKAAFGKVWKLEQTGGSIIGGTFKAIQEKNKAPKQ 141 (416)
Q Consensus 62 ~~~~~~~~~~s~~~~l~~~~g~~~~~~~~~p~~~~~~~~~~~~lS~~~~~~~~~~~~~~~gs~~~~~~~~~~~~~~~~~~ 141 (416)
+.+...+++.++.||+...|-+...=.+|+ .+|+-.+.. ||..+-.++.++....+.+
T Consensus 135 l~~E~~L~~~~I~d~F~~~FF~SnFW~~W~----T~FAFqpWh-Sa~E~rRyl~Rf~h~~~~l----------------- 192 (500)
T PF06100_consen 135 LTPEEDLGDKRIEDWFSESFFESNFWYMWS----TMFAFQPWH-SAVEFRRYLHRFIHEIPGL----------------- 192 (500)
T ss_pred cCCHHHhCcccHHHhcchhhhcCchhHhHH----HhhccCcch-hHHHHHHHHHHHHHhcCCC-----------------
Confidence 334445788889998776543221113333 355666655 5555555665543322221
Q ss_pred CCCCCCCCCCCCceeehhhhHhHHHHHHHHHh---ccceecCceeeeEEEcCC---Cce-EEEEeCCCCc-eEE---ecC
Q 014922 142 PRDPRLPKPKGQTVGSFRKGLTMLPEAISKRL---GSKVKLSWKLSGVKKLDS---GEY-SLTYETPEGL-VSL---RSR 210 (416)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~gG~~~l~~~L~~~l---g~~I~l~~~V~~I~~~~~---~~v-~v~~~~~~g~-~~~---~ad 210 (416)
....+ -.++.-+=+.+++..|.+.| |+++++|+.|+.|+.+.+ +.+ .+.+. .+|. +++ +-|
T Consensus 193 ------~~l~~-l~~T~YNQyeSii~Pl~~~L~~~GV~F~~~t~V~di~~~~~~~~~~~~~i~~~-~~g~~~~i~l~~~D 264 (500)
T PF06100_consen 193 ------NDLSG-LDRTKYNQYESIILPLIRYLKSQGVDFRFNTKVTDIDFDITGDKKTATRIHIE-QDGKEETIDLGPDD 264 (500)
T ss_pred ------CCccc-cccCccccHHHHHHHHHHHHHHCCCEEECCCEEEEEEEEccCCCeeEEEEEEE-cCCCeeEEEeCCCC
Confidence 00111 11222234788999999988 579999999999988633 212 24443 3443 222 347
Q ss_pred EEEEcCCh
Q 014922 211 SVVMTVPS 218 (416)
Q Consensus 211 ~VI~a~p~ 218 (416)
.|++|.--
T Consensus 265 lV~vT~GS 272 (500)
T PF06100_consen 265 LVFVTNGS 272 (500)
T ss_pred EEEEECCc
Confidence 88877543
No 69
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=92.44 E-value=4.6 Score=38.59 Aligned_cols=54 Identities=13% Similarity=0.262 Sum_probs=39.4
Q ss_pred hHHHHHHHHHh---c-cceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCChHHH
Q 014922 163 TMLPEAISKRL---G-SKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYVA 221 (416)
Q Consensus 163 ~~l~~~L~~~l---g-~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~~~~ 221 (416)
..+..+|++.+ | ..+..+++|..++... +.+.|. +.+| ++.||+||+|+-...-
T Consensus 156 ~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~-~~~~v~--t~~g--~i~a~~vv~a~G~~~~ 213 (387)
T COG0665 156 RLLTRALAAAAEELGVVIIEGGTPVTSLERDG-RVVGVE--TDGG--TIEADKVVLAAGAWAG 213 (387)
T ss_pred HHHHHHHHHHHHhcCCeEEEccceEEEEEecC-cEEEEE--eCCc--cEEeCEEEEcCchHHH
Confidence 35667777654 4 4678899999999863 335665 5777 5899999999987543
No 70
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=92.33 E-value=0.73 Score=44.46 Aligned_cols=62 Identities=13% Similarity=0.238 Sum_probs=47.6
Q ss_pred HhHHHHHHHHHh----ccceecCceeeeEEEcCCCceEEEEeC--CCCceEEecCEEEEcCChHHHHh
Q 014922 162 LTMLPEAISKRL----GSKVKLSWKLSGVKKLDSGEYSLTYET--PEGLVSLRSRSVVMTVPSYVASS 223 (416)
Q Consensus 162 ~~~l~~~L~~~l----g~~I~l~~~V~~I~~~~~~~v~v~~~~--~~g~~~~~ad~VI~a~p~~~~~~ 223 (416)
++.|.+.|.+.+ +.+|++++.|+.|++.+++.|.|++.. .+...++.|+.|++..-...+.-
T Consensus 180 FG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL~L 247 (488)
T PF06039_consen 180 FGALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGGGALPL 247 (488)
T ss_pred HHHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCchHhHHH
Confidence 567888888776 458999999999999988779887531 12235899999999987765543
No 71
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=92.10 E-value=11 Score=35.93 Aligned_cols=56 Identities=20% Similarity=0.097 Sum_probs=38.6
Q ss_pred HHHHHHHHh---c-cceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCChH-HHHhcc
Q 014922 165 LPEAISKRL---G-SKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSY-VASSLL 225 (416)
Q Consensus 165 l~~~L~~~l---g-~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~~-~~~~ll 225 (416)
+.+.|.+.+ + .+++ ++.|++|+.++++ +.|++ .+|. +++||.||.|.-.. .+++.+
T Consensus 113 l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~-~~v~~--~~g~-~~~a~~vI~adG~~S~vr~~~ 173 (388)
T PRK07608 113 IERALWAALRFQPNLTWF-PARAQGLEVDPDA-ATLTL--ADGQ-VLRADLVVGADGAHSWVRSQA 173 (388)
T ss_pred HHHHHHHHHHhCCCcEEE-cceeEEEEecCCe-EEEEE--CCCC-EEEeeEEEEeCCCCchHHHhc
Confidence 445554443 4 5677 9999999988776 87764 4564 78999999887663 344443
No 72
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=91.66 E-value=0.44 Score=45.96 Aligned_cols=53 Identities=15% Similarity=0.359 Sum_probs=41.6
Q ss_pred hHHHHHHHHHh---ccceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCChHH
Q 014922 163 TMLPEAISKRL---GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYV 220 (416)
Q Consensus 163 ~~l~~~L~~~l---g~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~~~ 220 (416)
..+.++|.+.+ |++|+++++|++|+.++++ +.|. +.+| ++.||.||+|+....
T Consensus 149 ~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~~~-~~V~--~~~g--~i~ad~vV~A~G~~s 204 (393)
T PRK11728 149 RAVAEAMAELIQARGGEIRLGAEVTALDEHANG-VVVR--TTQG--EYEARTLINCAGLMS 204 (393)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEecCCe-EEEE--ECCC--EEEeCEEEECCCcch
Confidence 56777777665 6799999999999987776 7765 4566 689999999988753
No 73
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.56 E-value=0.7 Score=43.48 Aligned_cols=159 Identities=14% Similarity=0.137 Sum_probs=95.6
Q ss_pred ceEEECCeeeeCCCCCCCCccccCCChhhHHHhhhcccCC----CCC-C-----CCCCCcHHHHHHH-hhCHHHHHHhhh
Q 014922 23 RFVLWNGRLRPVPSSPTDLPIFDLMSIGGKIRAGLGALGL----RPP-P-----PGHEESVEEFVRR-NLGDEVFERLIE 91 (416)
Q Consensus 23 ~~i~~~g~~~~~p~~~~~~~~~~~l~~~~~lr~~~~~~~~----~~~-~-----~~~~~s~~~~l~~-~~g~~~~~~~~~ 91 (416)
......|++.++|-+-.++...+-|+..+| |+++..+.| ... . ...+.+|.|||.. ++++.+-.-++.
T Consensus 166 ~l~~~eg~l~~VPcSRadvFnsk~LTivEK-r~LMKFltfc~~y~tEk~~~~~~~~~e~~F~EyL~~~rltp~lqs~vl~ 244 (547)
T KOG4405|consen 166 ILAFREGELEQVPCSRADVFNSKSLTIVEK-RMLMKFLTFCQEYLTEKDPDEYVEFRERPFSEYLKTMRLTPKLQSIVLH 244 (547)
T ss_pred hhcccCCeeeecCchHHhhhcccchhHHHH-HHHHHHHHHHHHhhhccCcHHHHHhhcCcHHHHHHhcCCChhhHHHHHH
Confidence 355678899999987666666677777666 333332211 011 1 2467899999998 577666544443
Q ss_pred hhhcccccCCcchhhHHHhhHHHHHHHHhcCChHHHHHHHHHhhccCCCCCCCCCCCCCCCCceeehhhhHhHHHHHHHH
Q 014922 92 PFCSGVYAGDPSKLSMKAAFGKVWKLEQTGGSIIGGTFKAIQEKNKAPKQPRDPRLPKPKGQTVGSFRKGLTMLPEAISK 171 (416)
Q Consensus 92 p~~~~~~~~~~~~lS~~~~~~~~~~~~~~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~L~~ 171 (416)
.+ --.+.++.+..--+.....+....| .+....+.++.-|-+.|++.+.+
T Consensus 245 aI----aM~~~~~~tt~eGm~at~~fl~slG--------------------------rfgntpfLfPlYGqGELpQcFCR 294 (547)
T KOG4405|consen 245 AI----AMLSESQLTTIEGMDATKNFLTSLG--------------------------RFGNTPFLFPLYGQGELPQCFCR 294 (547)
T ss_pred HH----HhcCcccccHHHHHHHHHHHHHHhh--------------------------ccCCCcceeeccCCCcchHHHHH
Confidence 32 1233444554444444333222122 12334456777889999997776
Q ss_pred Hh---ccceecCceeeeEEEcCCCceE--EEEeCCCCceEEecCEEEEc
Q 014922 172 RL---GSKVKLSWKLSGVKKLDSGEYS--LTYETPEGLVSLRSRSVVMT 215 (416)
Q Consensus 172 ~l---g~~I~l~~~V~~I~~~~~~~v~--v~~~~~~g~~~~~ad~VI~a 215 (416)
.. |+-.-|+.+|+.|..+++. .. +.+ ...|. .+.+.++|+.
T Consensus 295 lcAVfGgIYcLr~~Vq~ivldk~s-~~~~~~l-~s~g~-ri~~k~~v~s 340 (547)
T KOG4405|consen 295 LCAVFGGIYCLRRPVQAIVLDKES-LDCKAIL-DSFGQ-RINAKNFVVS 340 (547)
T ss_pred HHHHhcceEEeccchhheeecccc-cchhhhH-hhhcc-hhcceeeeec
Confidence 54 7778899999999987764 32 222 23453 6778777765
No 74
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=91.49 E-value=0.67 Score=44.99 Aligned_cols=56 Identities=21% Similarity=0.356 Sum_probs=40.1
Q ss_pred hHhHHHHHHHHHh---ccceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCCh
Q 014922 161 GLTMLPEAISKRL---GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPS 218 (416)
Q Consensus 161 G~~~l~~~L~~~l---g~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~ 218 (416)
|+ .+.+.|.+.+ |.+|+++++|++++..+++ +.+.+..+++...+++|.||+|+-.
T Consensus 258 G~-rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~~~-V~~v~~~~g~~~~i~AD~VVLAtGr 316 (422)
T PRK05329 258 GL-RLQNALRRAFERLGGRIMPGDEVLGAEFEGGR-VTAVWTRNHGDIPLRARHFVLATGS 316 (422)
T ss_pred hH-HHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCE-EEEEEeeCCceEEEECCEEEEeCCC
Confidence 44 5777777665 5799999999999987765 6654322222346899999999764
No 75
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=91.37 E-value=0.71 Score=38.04 Aligned_cols=36 Identities=25% Similarity=0.529 Sum_probs=29.2
Q ss_pred ecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCC
Q 014922 178 KLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVP 217 (416)
Q Consensus 178 ~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p 217 (416)
+...+|+.|+..+++ +.|. +.+|. .+.||+||+|+-
T Consensus 119 ~~~~~V~~i~~~~~~-~~v~--~~~g~-~~~~d~VvLa~G 154 (156)
T PF13454_consen 119 HVRAEVVDIRRDDDG-YRVV--TADGQ-SIRADAVVLATG 154 (156)
T ss_pred EEeeEEEEEEEcCCc-EEEE--ECCCC-EEEeCEEEECCC
Confidence 356799999999887 8776 35674 889999999974
No 76
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=91.00 E-value=0.72 Score=45.81 Aligned_cols=55 Identities=24% Similarity=0.423 Sum_probs=40.2
Q ss_pred hHHHHHHHHHh-------c--cceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCChHHH
Q 014922 163 TMLPEAISKRL-------G--SKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYVA 221 (416)
Q Consensus 163 ~~l~~~L~~~l-------g--~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~~~~ 221 (416)
..+..+|++.+ | .+|+++++|++|+..+++.|.|+ +.+| +++||.||+|+-....
T Consensus 211 ~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~--T~~G--~i~A~~VVvaAG~~S~ 274 (497)
T PTZ00383 211 QKLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIH--TNRG--EIRARFVVVSACGYSL 274 (497)
T ss_pred HHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeEEEE--ECCC--EEEeCEEEECcChhHH
Confidence 45666665543 4 46899999999998755447775 5677 6899999999987543
No 77
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=90.50 E-value=17 Score=34.90 Aligned_cols=34 Identities=18% Similarity=0.267 Sum_probs=28.4
Q ss_pred CCEEEeeccC------CCCchhHHHHHHHHHHHHHHHHhh
Q 014922 378 QGLFLGGNYV------AGVALGRCVESAYEVASEVSNFLS 411 (416)
Q Consensus 378 ~~l~~aG~~~------~g~~~~~ai~sg~~aA~~il~~l~ 411 (416)
+++.++||.. .|.|+..|+.||..||+.|...+.
T Consensus 264 ~~v~lvGDAAg~v~P~tG~GI~~A~~sg~~aa~~i~~~l~ 303 (388)
T TIGR02023 264 GRAMLVGDAAGLVTPASGEGIYFAMKSGQMAAQAIAEYLQ 303 (388)
T ss_pred CCEEEEeccccCcCCcccccHHHHHHHHHHHHHHHHHHHh
Confidence 6899999853 477888999999999999987664
No 78
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=90.47 E-value=0.86 Score=44.91 Aligned_cols=54 Identities=13% Similarity=0.196 Sum_probs=37.6
Q ss_pred HHHHHHH---Hhcc--ceecCceeeeEEEcCCCceEEEEeCCCCc-eEEecCEEEEcCChH
Q 014922 165 LPEAISK---RLGS--KVKLSWKLSGVKKLDSGEYSLTYETPEGL-VSLRSRSVVMTVPSY 219 (416)
Q Consensus 165 l~~~L~~---~lg~--~I~l~~~V~~I~~~~~~~v~v~~~~~~g~-~~~~ad~VI~a~p~~ 219 (416)
+.+.|.+ ..+. .|+++++|++|+..+++ |+|+....++. .+..||+||+|+-..
T Consensus 113 v~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~-w~V~~~~~~~~~~~~~~d~VIvAtG~~ 172 (461)
T PLN02172 113 VLAYLQDFAREFKIEEMVRFETEVVRVEPVDGK-WRVQSKNSGGFSKDEIFDAVVVCNGHY 172 (461)
T ss_pred HHHHHHHHHHHcCCcceEEecCEEEEEeecCCe-EEEEEEcCCCceEEEEcCEEEEeccCC
Confidence 4444444 4443 39999999999988776 99986433332 246799999998753
No 79
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=90.43 E-value=0.73 Score=44.11 Aligned_cols=52 Identities=13% Similarity=0.219 Sum_probs=39.3
Q ss_pred HHHHHHHHHh---ccceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCCh
Q 014922 164 MLPEAISKRL---GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPS 218 (416)
Q Consensus 164 ~l~~~L~~~l---g~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~ 218 (416)
.+++.+.+.| |++|++++.|..|+..++. +... .+.+|. ++.+|+||+|+--
T Consensus 174 ~vvkni~~~l~~~G~ei~f~t~VeDi~~~~~~-~~~v-~~~~g~-~i~~~~vvlA~Gr 228 (486)
T COG2509 174 KVVKNIREYLESLGGEIRFNTEVEDIEIEDNE-VLGV-KLTKGE-EIEADYVVLAPGR 228 (486)
T ss_pred HHHHHHHHHHHhcCcEEEeeeEEEEEEecCCc-eEEE-EccCCc-EEecCEEEEccCc
Confidence 4566666665 6799999999999998875 3322 245774 8999999999754
No 80
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=90.08 E-value=1.3 Score=44.06 Aligned_cols=66 Identities=17% Similarity=0.257 Sum_probs=45.6
Q ss_pred eeehhhh---HhHHHHHHHHHh---ccceecCceeeeEEEcCCCceEEEEe-CCCCc-eEEecCEEEEcCChHH
Q 014922 155 VGSFRKG---LTMLPEAISKRL---GSKVKLSWKLSGVKKLDSGEYSLTYE-TPEGL-VSLRSRSVVMTVPSYV 220 (416)
Q Consensus 155 ~~~~~gG---~~~l~~~L~~~l---g~~I~l~~~V~~I~~~~~~~v~v~~~-~~~g~-~~~~ad~VI~a~p~~~ 220 (416)
++.+.+| ...+..+|++.+ |++|+++++|++|+.++++.|.|+.. +.+|. .+++||+||+|+-...
T Consensus 167 l~~p~~g~Vdp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s 240 (483)
T TIGR01320 167 NWAAEGTDVDFGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGA 240 (483)
T ss_pred EEeCCCEEECHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCcch
Confidence 4555555 356777777765 67999999999999865433776532 22332 2689999999987643
No 81
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=90.07 E-value=0.82 Score=45.13 Aligned_cols=76 Identities=21% Similarity=0.252 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCcEEEEEecCCCCCCCCCCHHHHHHHHHHHhhhcCCCCEEEeeccCCCCchhHHHHHHH
Q 014922 321 ELVEAVDRDLRKMLINPNAKDPLVLGVRVWQQAIPQFLVGHLDLLDAAKSSLRDNGYQGLFLGGNYVAGVALGRCVESAY 400 (416)
Q Consensus 321 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~w~~~~p~~~~g~~~~~~~~~~~l~~~~~~~l~~aG~~~~g~~~~~ai~sg~ 400 (416)
...+.+.+.+.+++|.-. + .-..+.|..-++ +++.....+.. +. ..+|||+|..+ .|.|+.-+..+|+
T Consensus 318 ~~~~~l~~~~~~~fP~L~--~--~~i~~~W~G~~~-~t~D~~P~iG~----~~--~~~gl~~a~G~-~G~Gv~~a~~~G~ 385 (460)
T TIGR03329 318 PYEALLTRSLRKFFPALA--E--VPIAASWNGPSD-RSVTGLPFFGR----LN--GQPNVFYGFGY-SGNGVAPSRMGGQ 385 (460)
T ss_pred HHHHHHHHHHHHhCCCcC--C--CeeeEEEeceeC-CCCCCCceeee----ec--CCCCEEEEeCc-CCCChhHHHHHHH
Confidence 445677788888887321 1 124577887655 33333222221 11 24799998765 4678888999999
Q ss_pred HHHHHHHH
Q 014922 401 EVASEVSN 408 (416)
Q Consensus 401 ~aA~~il~ 408 (416)
..|+.|+.
T Consensus 386 ~lA~li~g 393 (460)
T TIGR03329 386 ILSSLVLG 393 (460)
T ss_pred HHHHHhcC
Confidence 99988864
No 82
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=89.87 E-value=0.76 Score=46.09 Aligned_cols=57 Identities=16% Similarity=0.323 Sum_probs=38.7
Q ss_pred HhHHHHHHHHHhc--cceecCceeeeEEEcCC----CceEEEEeCCCCc-eEEecCEEEEcCChH
Q 014922 162 LTMLPEAISKRLG--SKVKLSWKLSGVKKLDS----GEYSLTYETPEGL-VSLRSRSVVMTVPSY 219 (416)
Q Consensus 162 ~~~l~~~L~~~lg--~~I~l~~~V~~I~~~~~----~~v~v~~~~~~g~-~~~~ad~VI~a~p~~ 219 (416)
+....+..++..+ ..|++|+.|++|++.++ +.|.|+.. .+|. ++..+|+||+|+-..
T Consensus 86 v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~-~~g~~~~~~fD~VvvatG~~ 149 (531)
T PF00743_consen 86 VLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTE-NDGKEETEEFDAVVVATGHF 149 (531)
T ss_dssp HHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEET-TTTEEEEEEECEEEEEE-SS
T ss_pred HHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEee-cCCeEEEEEeCeEEEcCCCc
Confidence 4445555555433 57999999999998643 34999853 3453 456799999997653
No 83
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=89.67 E-value=1.2 Score=43.57 Aligned_cols=59 Identities=14% Similarity=0.204 Sum_probs=40.8
Q ss_pred hhhhHhHHHHHHHHHh---ccceecCceeeeEEEcC-CCceE-EEEeCCCCceEEecCEEEEcCCh
Q 014922 158 FRKGLTMLPEAISKRL---GSKVKLSWKLSGVKKLD-SGEYS-LTYETPEGLVSLRSRSVVMTVPS 218 (416)
Q Consensus 158 ~~gG~~~l~~~L~~~l---g~~I~l~~~V~~I~~~~-~~~v~-v~~~~~~g~~~~~ad~VI~a~p~ 218 (416)
+.++...+.+.|.+.+ +.+|+++++|++|..++ ++.+. |.. +.++ ..+.++.||+|+-.
T Consensus 118 ~~~~g~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~-~~~~-~~i~ak~VIlAtGG 181 (432)
T TIGR02485 118 LRGGGKALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLT-TVGT-HRITTQALVLAAGG 181 (432)
T ss_pred ecCCHHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEE-cCCc-EEEEcCEEEEcCCC
Confidence 3455667888886654 67999999999998763 33232 332 2233 47899999999873
No 84
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=89.59 E-value=1.6 Score=43.37 Aligned_cols=66 Identities=17% Similarity=0.242 Sum_probs=44.3
Q ss_pred eeehhhh---HhHHHHHHHHHh---c-cceecCceeeeEEEcCCCceEEEEe-CCCCc-eEEecCEEEEcCChHH
Q 014922 155 VGSFRKG---LTMLPEAISKRL---G-SKVKLSWKLSGVKKLDSGEYSLTYE-TPEGL-VSLRSRSVVMTVPSYV 220 (416)
Q Consensus 155 ~~~~~gG---~~~l~~~L~~~l---g-~~I~l~~~V~~I~~~~~~~v~v~~~-~~~g~-~~~~ad~VI~a~p~~~ 220 (416)
++.+.+| ...+.++|++.+ | .+|+++++|++|+.++++.|.|+.. +..|. .+++||+||+|+....
T Consensus 172 l~~p~~g~Vd~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s 246 (494)
T PRK05257 172 TRIEIGTDVNFGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSWTVTVKDLKTGEKRTVRAKFVFIGAGGGA 246 (494)
T ss_pred EEcCCceEECHHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCEEEEEEEcCCCceEEEEcCEEEECCCcch
Confidence 3444444 345677776654 4 4899999999999865544776542 22342 2589999999987754
No 85
>PRK08244 hypothetical protein; Provisional
Probab=89.45 E-value=1.3 Score=44.07 Aligned_cols=65 Identities=18% Similarity=0.208 Sum_probs=46.0
Q ss_pred hhHhHHHHHHHHHhccceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCCh-HHHHhcc
Q 014922 160 KGLTMLPEAISKRLGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPS-YVASSLL 225 (416)
Q Consensus 160 gG~~~l~~~L~~~lg~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~-~~~~~ll 225 (416)
.-++.+....++..+.+|+++++|++|+.++++ ++|++.+.+|.++++||.||.|--. ..+++.+
T Consensus 100 ~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~-v~v~~~~~~g~~~i~a~~vVgADG~~S~vR~~l 165 (493)
T PRK08244 100 AETEKVLEEHARSLGVEIFRGAEVLAVRQDGDG-VEVVVRGPDGLRTLTSSYVVGADGAGSIVRKQA 165 (493)
T ss_pred HHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCe-EEEEEEeCCccEEEEeCEEEECCCCChHHHHhc
Confidence 345555554445557799999999999988886 8877654455347899999998755 3445544
No 86
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=89.41 E-value=1.4 Score=43.83 Aligned_cols=57 Identities=19% Similarity=0.305 Sum_probs=40.7
Q ss_pred hHHHHHHHHHh----ccceecCceeeeEEEc-CCCceEEEEe-CCCCc-eEEecCEEEEcCChHH
Q 014922 163 TMLPEAISKRL----GSKVKLSWKLSGVKKL-DSGEYSLTYE-TPEGL-VSLRSRSVVMTVPSYV 220 (416)
Q Consensus 163 ~~l~~~L~~~l----g~~I~l~~~V~~I~~~-~~~~v~v~~~-~~~g~-~~~~ad~VI~a~p~~~ 220 (416)
..|.++|.+.+ |++|+++++|++|+.. +++ |+|++. +.+|. .+++||+||+|+-...
T Consensus 184 ~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~-w~v~v~~t~~g~~~~i~Ad~VV~AAGawS 247 (497)
T PRK13339 184 GALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGG-WEVTVKDRNTGEKREQVADYVFIGAGGGA 247 (497)
T ss_pred HHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCC-EEEEEEecCCCceEEEEcCEEEECCCcch
Confidence 35566666554 4689999999999987 555 887642 33341 2589999999988755
No 87
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=88.78 E-value=1.5 Score=42.33 Aligned_cols=59 Identities=19% Similarity=0.204 Sum_probs=41.1
Q ss_pred HHHHHHHHHh---ccceecCceeeeEEEcCCCceEEEEeCCCC-ceEEecCEEEEcCChHHHHhc
Q 014922 164 MLPEAISKRL---GSKVKLSWKLSGVKKLDSGEYSLTYETPEG-LVSLRSRSVVMTVPSYVASSL 224 (416)
Q Consensus 164 ~l~~~L~~~l---g~~I~l~~~V~~I~~~~~~~v~v~~~~~~g-~~~~~ad~VI~a~p~~~~~~l 224 (416)
.|.++|.+.+ |++|..+++|.+++.++++ ++... +.++ +..++||+||+|+-......|
T Consensus 264 RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~~~-v~~V~-t~~g~~~~l~AD~vVLAaGaw~S~gL 326 (419)
T TIGR03378 264 RLEEALKHRFEQLGGVMLPGDRVLRAEFEGNR-VTRIH-TRNHRDIPLRADHFVLASGSFFSNGL 326 (419)
T ss_pred HHHHHHHHHHHHCCCEEEECcEEEEEEeeCCe-EEEEE-ecCCccceEECCEEEEccCCCcCHHH
Confidence 3555565544 7899999999999988776 65332 2333 247999999999877544444
No 88
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=88.62 E-value=1.3 Score=44.97 Aligned_cols=61 Identities=13% Similarity=0.097 Sum_probs=40.9
Q ss_pred ehhhhHhHHHHHHHHHh---ccceecCceeeeEEEcCCCceEEEEeCCCCceEEec-CEEEEcCCh
Q 014922 157 SFRKGLTMLPEAISKRL---GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRS-RSVVMTVPS 218 (416)
Q Consensus 157 ~~~gG~~~l~~~L~~~l---g~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~a-d~VI~a~p~ 218 (416)
+..+| ..|..+|.+.+ +.+|+++++|+++..++++.+.|.....++...+.+ +.||+|+--
T Consensus 212 ~~~~G-~~l~~~L~~~~~~~Gv~i~~~t~v~~Li~~~g~V~GV~~~~~g~~~~i~a~kaVILAtGG 276 (564)
T PRK12845 212 YAAGG-QALAAGLFAGVLRAGIPIWTETSLVRLTDDGGRVTGAVVDHRGREVTVTARRGVVLAAGG 276 (564)
T ss_pred ccCCh-HHHHHHHHHHHHHCCCEEEecCEeeEEEecCCEEEEEEEEECCcEEEEEcCCEEEEecCC
Confidence 44566 78888887765 679999999999987655423343333333334566 589999854
No 89
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=88.61 E-value=1.3 Score=45.13 Aligned_cols=56 Identities=23% Similarity=0.300 Sum_probs=38.3
Q ss_pred HHHHHHHHHh---ccceecCceeeeEEEcCCCceEEEEeCCCCceEEec-CEEEEcCChH
Q 014922 164 MLPEAISKRL---GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRS-RSVVMTVPSY 219 (416)
Q Consensus 164 ~l~~~L~~~l---g~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~a-d~VI~a~p~~ 219 (416)
.|+++|.+.+ |++|+++++|++|..++++.+.|.+.+.++...+.+ +.||+|+-..
T Consensus 218 ~l~~~L~~~a~~~Gv~i~~~t~v~~l~~~~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~ 277 (581)
T PRK06134 218 ALVARLLKSAEDLGVRIWESAPARELLREDGRVAGAVVETPGGLQEIRARKGVVLAAGGF 277 (581)
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEEECCcEEEEEeCCEEEEcCCCc
Confidence 3556665544 679999999999987655422354444455446788 9999998553
No 90
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=88.52 E-value=1.3 Score=42.45 Aligned_cols=51 Identities=18% Similarity=0.247 Sum_probs=37.8
Q ss_pred HHHHHHHHH---hccceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCChH
Q 014922 164 MLPEAISKR---LGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSY 219 (416)
Q Consensus 164 ~l~~~L~~~---lg~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~~ 219 (416)
.+.+.|.+. .|.+++.+++|++|+.++++ +.|+ +.+| ++.+|.||+|+...
T Consensus 146 ~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~~~-~~v~--~~~~--~i~a~~vV~aaG~~ 199 (380)
T TIGR01377 146 KALRALQELAEAHGATVRDGTKVVEIEPTELL-VTVK--TTKG--SYQANKLVVTAGAW 199 (380)
T ss_pred HHHHHHHHHHHHcCCEEECCCeEEEEEecCCe-EEEE--eCCC--EEEeCEEEEecCcc
Confidence 344445443 47799999999999987765 7775 4455 68999999998764
No 91
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=88.42 E-value=1.7 Score=42.97 Aligned_cols=61 Identities=16% Similarity=0.230 Sum_probs=41.3
Q ss_pred hhhhHhHHHHHHHHHh---ccceecCceeeeEEEcCCCceEEEEeCCCCc-eEEecCEEEEcCCh
Q 014922 158 FRKGLTMLPEAISKRL---GSKVKLSWKLSGVKKLDSGEYSLTYETPEGL-VSLRSRSVVMTVPS 218 (416)
Q Consensus 158 ~~gG~~~l~~~L~~~l---g~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~-~~~~ad~VI~a~p~ 218 (416)
+.+|...+.+.|.+.+ +.+|+++++|++|..++++.+.|.+...+|. ..+.++.||+|+-.
T Consensus 126 ~~g~g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~~~g~~~~i~a~~VIlAtGg 190 (466)
T PRK08274 126 FWGGGKALVNALYRSAERLGVEIRYDAPVTALELDDGRFVGARAGSAAGGAERIRAKAVVLAAGG 190 (466)
T ss_pred ecCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCeEEEEEEEccCCceEEEECCEEEECCCC
Confidence 3444456777776654 5799999999999987665233443223332 46889999999853
No 92
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=88.41 E-value=1.3 Score=43.06 Aligned_cols=59 Identities=19% Similarity=0.379 Sum_probs=40.4
Q ss_pred hHhHHHHHHHHHh---ccceecCceeeeEEEcCCCceEEEEe-CCCCc-eEEecCEEEEcCChH
Q 014922 161 GLTMLPEAISKRL---GSKVKLSWKLSGVKKLDSGEYSLTYE-TPEGL-VSLRSRSVVMTVPSY 219 (416)
Q Consensus 161 G~~~l~~~L~~~l---g~~I~l~~~V~~I~~~~~~~v~v~~~-~~~g~-~~~~ad~VI~a~p~~ 219 (416)
+...+.+.|.+.+ +.+|+++++|+++..++++.+.|.+. ..+|. ..+.|++||+|+--.
T Consensus 139 ~g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~ 202 (417)
T PF00890_consen 139 GGKALIEALAKAAEEAGVDIRFNTRVTDLITEDGRVTGVVAENPADGEFVRIKAKAVILATGGF 202 (417)
T ss_dssp HHHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTEEEEEEEEETTTCEEEEEEESEEEE----B
T ss_pred cHHHHHHHHHHHHhhcCeeeeccceeeeEEEeCCceeEEEEEECCCCeEEEEeeeEEEeccCcc
Confidence 4556778887776 57999999999999987763345554 23443 568899999998553
No 93
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=88.35 E-value=1.4 Score=42.63 Aligned_cols=56 Identities=14% Similarity=0.173 Sum_probs=39.2
Q ss_pred HHHHHHHHHh---ccceecCceeeeEEEcCCCceEEEEeCCCC--ceEEecCEEEEcCChHH
Q 014922 164 MLPEAISKRL---GSKVKLSWKLSGVKKLDSGEYSLTYETPEG--LVSLRSRSVVMTVPSYV 220 (416)
Q Consensus 164 ~l~~~L~~~l---g~~I~l~~~V~~I~~~~~~~v~v~~~~~~g--~~~~~ad~VI~a~p~~~ 220 (416)
.+...|.+.+ |.+|+.+++|++|+.++++ |++.+.+.++ ..+++||.||+|+-+..
T Consensus 198 ~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~~~-~~v~~~~~~~~~~~~i~a~~vV~a~G~~s 258 (410)
T PRK12409 198 KFTTGLAAACARLGVQFRYGQEVTSIKTDGGG-VVLTVQPSAEHPSRTLEFDGVVVCAGVGS 258 (410)
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCE-EEEEEEcCCCCccceEecCEEEECCCcCh
Confidence 4455555544 6799999999999987665 7765433221 12689999999998754
No 94
>PRK07236 hypothetical protein; Provisional
Probab=88.28 E-value=1.4 Score=42.41 Aligned_cols=54 Identities=13% Similarity=0.146 Sum_probs=42.3
Q ss_pred hHhHHHHHHHHHhc-cceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCCh
Q 014922 161 GLTMLPEAISKRLG-SKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPS 218 (416)
Q Consensus 161 G~~~l~~~L~~~lg-~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~ 218 (416)
+...+.+.|.+.++ .+|++++.|++|+.++++ |+|++ .+|+ +++||.||.|--.
T Consensus 98 ~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~-v~v~~--~~g~-~~~ad~vIgADG~ 152 (386)
T PRK07236 98 SWNVLYRALRAAFPAERYHLGETLVGFEQDGDR-VTARF--ADGR-RETADLLVGADGG 152 (386)
T ss_pred CHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCe-EEEEE--CCCC-EEEeCEEEECCCC
Confidence 34567777877775 479999999999988776 88875 4664 8899999999543
No 95
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=88.12 E-value=1.2 Score=43.33 Aligned_cols=57 Identities=9% Similarity=0.109 Sum_probs=43.8
Q ss_pred HHHHHHHHHhc-cceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCChHH-HHhc
Q 014922 164 MLPEAISKRLG-SKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYV-ASSL 224 (416)
Q Consensus 164 ~l~~~L~~~lg-~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~~~-~~~l 224 (416)
.|.+.|.+.+. ..|+++++|++|+.++++ |+|++ .+|. +++||.||.|--... +++.
T Consensus 106 ~l~~~L~~~~~~~~v~~~~~v~~i~~~~~~-~~v~~--~~g~-~~~ad~vVgADG~~S~vR~~ 164 (414)
T TIGR03219 106 DFLDALLKHLPEGIASFGKRATQIEEQAEE-VQVLF--TDGT-EYRCDLLIGADGIKSALRDY 164 (414)
T ss_pred HHHHHHHHhCCCceEEcCCEEEEEEecCCc-EEEEE--cCCC-EEEeeEEEECCCccHHHHHH
Confidence 47778887773 468999999999988877 88875 4664 789999999976643 4444
No 96
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=88.01 E-value=1.8 Score=41.79 Aligned_cols=56 Identities=18% Similarity=0.316 Sum_probs=42.4
Q ss_pred hhhHhHHHHHHHHHh---ccceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCChH
Q 014922 159 RKGLTMLPEAISKRL---GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSY 219 (416)
Q Consensus 159 ~gG~~~l~~~L~~~l---g~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~~ 219 (416)
.+....+.+.|.+.+ +.+|+++++|++|+.++++ +.|+. ++. ++.+|.||+|+...
T Consensus 101 ~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~~-~~v~~---~~~-~i~ad~VIlAtG~~ 159 (400)
T TIGR00275 101 SDSAADVLDALLNELKELGVEILTNSKVKSIKKDDNG-FGVET---SGG-EYEADKVILATGGL 159 (400)
T ss_pred CCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCe-EEEEE---CCc-EEEcCEEEECCCCc
Confidence 344567777777765 5689999999999887665 77763 333 78999999999863
No 97
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=87.85 E-value=1.3 Score=42.31 Aligned_cols=42 Identities=14% Similarity=0.405 Sum_probs=34.7
Q ss_pred hccceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCChH
Q 014922 173 LGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSY 219 (416)
Q Consensus 173 lg~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~~ 219 (416)
.|.+|+++++|++|+.++++ ++|+ +++| ++.||.||+|+...
T Consensus 162 ~gv~i~~~~~v~~i~~~~~~-~~v~--~~~g--~~~a~~vV~A~G~~ 203 (376)
T PRK11259 162 AGAELLFNEPVTAIEADGDG-VTVT--TADG--TYEAKKLVVSAGAW 203 (376)
T ss_pred CCCEEECCCEEEEEEeeCCe-EEEE--eCCC--EEEeeEEEEecCcc
Confidence 36799999999999987775 7775 4566 68999999999875
No 98
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=87.77 E-value=1.3 Score=44.80 Aligned_cols=51 Identities=20% Similarity=0.307 Sum_probs=39.4
Q ss_pred ccceecCceeeeEEEcCCCceEEEEeCCCCc-eEEecCEEEEcCCh-HHHHhcc
Q 014922 174 GSKVKLSWKLSGVKKLDSGEYSLTYETPEGL-VSLRSRSVVMTVPS-YVASSLL 225 (416)
Q Consensus 174 g~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~-~~~~ad~VI~a~p~-~~~~~ll 225 (416)
+.+|+++++|++|++++++ |+|++.+.+|+ ++++||.||-|--. ..+++.+
T Consensus 128 gv~v~~g~~v~~i~~~~~~-v~v~~~~~~G~~~~i~ad~vVgADG~~S~vR~~l 180 (538)
T PRK06183 128 HVRVRFGHEVTALTQDDDG-VTVTLTDADGQRETVRARYVVGCDGANSFVRRTL 180 (538)
T ss_pred CcEEEcCCEEEEEEEcCCe-EEEEEEcCCCCEEEEEEEEEEecCCCchhHHHHc
Confidence 5689999999999998887 88887544562 57999999988765 4445554
No 99
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=86.87 E-value=1.5 Score=45.45 Aligned_cols=62 Identities=16% Similarity=0.193 Sum_probs=45.5
Q ss_pred eeehhhhH---hHHHHHHHHHhc--cceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCChHH
Q 014922 155 VGSFRKGL---TMLPEAISKRLG--SKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYV 220 (416)
Q Consensus 155 ~~~~~gG~---~~l~~~L~~~lg--~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~~~ 220 (416)
++.+.+|. ..+.++|.+.+. ++|+.+++|++|+.++++ |+|. +.+|. .++||.||+|+....
T Consensus 397 ~~~p~~G~v~p~~l~~aL~~~a~~Gv~i~~~~~V~~i~~~~~~-~~v~--t~~g~-~~~ad~VV~A~G~~s 463 (662)
T PRK01747 397 IFYPQGGWLCPAELCRALLALAGQQLTIHFGHEVARLEREDDG-WQLD--FAGGT-LASAPVVVLANGHDA 463 (662)
T ss_pred EEeCCCCeeCHHHHHHHHHHhcccCcEEEeCCEeeEEEEeCCE-EEEE--ECCCc-EEECCEEEECCCCCc
Confidence 45555553 356777766653 789999999999988776 8775 45663 678999999988753
No 100
>PRK06184 hypothetical protein; Provisional
Probab=86.74 E-value=1.9 Score=43.12 Aligned_cols=51 Identities=22% Similarity=0.315 Sum_probs=38.1
Q ss_pred ccceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCChHH-HHhcc
Q 014922 174 GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYV-ASSLL 225 (416)
Q Consensus 174 g~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~~~-~~~ll 225 (416)
+.+|+++++|++|+.++++ |++++.+.++.++++||.||.|.-..- +++.+
T Consensus 123 gv~i~~~~~v~~i~~~~~~-v~v~~~~~~~~~~i~a~~vVgADG~~S~vR~~l 174 (502)
T PRK06184 123 GHRVEFGCELVGFEQDADG-VTARVAGPAGEETVRARYLVGADGGRSFVRKAL 174 (502)
T ss_pred CCEEEeCcEEEEEEEcCCc-EEEEEEeCCCeEEEEeCEEEECCCCchHHHHhC
Confidence 6799999999999998887 887754323334899999999986643 44544
No 101
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=86.56 E-value=35 Score=33.62 Aligned_cols=34 Identities=15% Similarity=0.061 Sum_probs=28.8
Q ss_pred CCEEEeeccC------CCCchhHHHHHHHHHHHHHHHHhh
Q 014922 378 QGLFLGGNYV------AGVALGRCVESAYEVASEVSNFLS 411 (416)
Q Consensus 378 ~~l~~aG~~~------~g~~~~~ai~sg~~aA~~il~~l~ 411 (416)
+++.++||.. .|.|+..|+.||..||+.+.+.+.
T Consensus 309 ~~vlLvGDAAg~v~P~tGeGI~~Am~sg~~AAe~i~~~~~ 348 (450)
T PLN00093 309 GRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEGSE 348 (450)
T ss_pred CCcEEEeccccCCCccccccHHHHHHHHHHHHHHHHHHHh
Confidence 6899999853 478899999999999999987653
No 102
>PRK06175 L-aspartate oxidase; Provisional
Probab=86.31 E-value=1.8 Score=42.30 Aligned_cols=55 Identities=7% Similarity=0.085 Sum_probs=36.3
Q ss_pred HHHHHHHHHh----ccceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCCh
Q 014922 164 MLPEAISKRL----GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPS 218 (416)
Q Consensus 164 ~l~~~L~~~l----g~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~ 218 (416)
.+.+.|.+.+ +.+|+++++|++|..++++.+.|...+.++...+.|+.||+|+-.
T Consensus 129 ~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~~~~v~Gv~~~~~g~~~~i~Ak~VILAtGG 187 (433)
T PRK06175 129 KVEKILLKKVKKRKNITIIENCYLVDIIENDNTCIGAICLKDNKQINIYSKVTILATGG 187 (433)
T ss_pred HHHHHHHHHHHhcCCCEEEECcEeeeeEecCCEEEEEEEEECCcEEEEEcCeEEEccCc
Confidence 3555555443 568999999999987665423333222333236899999999866
No 103
>PRK06475 salicylate hydroxylase; Provisional
Probab=86.15 E-value=1.9 Score=41.63 Aligned_cols=61 Identities=10% Similarity=0.112 Sum_probs=41.9
Q ss_pred HHHHHHHHHh----ccceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCCh-HHHHhcc
Q 014922 164 MLPEAISKRL----GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPS-YVASSLL 225 (416)
Q Consensus 164 ~l~~~L~~~l----g~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~-~~~~~ll 225 (416)
.|-+.|.+.+ +.+|+++++|++++.++++ ++|++...++.++++||.||-|--. ..+++.+
T Consensus 108 ~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~-v~v~~~~~~~~~~~~adlvIgADG~~S~vR~~~ 173 (400)
T PRK06475 108 DLQSALLDACRNNPGIEIKLGAEMTSQRQTGNS-ITATIIRTNSVETVSAAYLIACDGVWSMLRAKA 173 (400)
T ss_pred HHHHHHHHHHHhcCCcEEEECCEEEEEecCCCc-eEEEEEeCCCCcEEecCEEEECCCccHhHHhhc
Confidence 3445555544 3579999999999988776 8887643333347899999988765 3445554
No 104
>PRK09897 hypothetical protein; Provisional
Probab=85.73 E-value=2.4 Score=42.54 Aligned_cols=41 Identities=15% Similarity=0.074 Sum_probs=32.1
Q ss_pred cceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCCh
Q 014922 175 SKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPS 218 (416)
Q Consensus 175 ~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~ 218 (416)
.+|+.+++|++|+.++++ +.|+. ..+| ..+.||+||+|+-.
T Consensus 124 V~v~~~~~V~~I~~~~~g-~~V~t-~~gg-~~i~aD~VVLAtGh 164 (534)
T PRK09897 124 VAVYESCQVTDLQITNAG-VMLAT-NQDL-PSETFDLAVIATGH 164 (534)
T ss_pred EEEEECCEEEEEEEeCCE-EEEEE-CCCC-eEEEcCEEEECCCC
Confidence 478889999999988876 88863 2334 37899999999864
No 105
>PRK07588 hypothetical protein; Provisional
Probab=85.58 E-value=2.1 Score=41.14 Aligned_cols=56 Identities=14% Similarity=0.127 Sum_probs=40.2
Q ss_pred HHHHHHHHh--ccceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCCh-HHHHhc
Q 014922 165 LPEAISKRL--GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPS-YVASSL 224 (416)
Q Consensus 165 l~~~L~~~l--g~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~-~~~~~l 224 (416)
|.+.|.+.+ +.+|+++++|++|+.++++ |+|++ .+|+ ++++|.||.|--. ..+++.
T Consensus 105 l~~~L~~~~~~~v~i~~~~~v~~i~~~~~~-v~v~~--~~g~-~~~~d~vIgADG~~S~vR~~ 163 (391)
T PRK07588 105 LAAAIYTAIDGQVETIFDDSIATIDEHRDG-VRVTF--ERGT-PRDFDLVIGADGLHSHVRRL 163 (391)
T ss_pred HHHHHHHhhhcCeEEEeCCEEeEEEECCCe-EEEEE--CCCC-EEEeCEEEECCCCCccchhh
Confidence 444444443 3589999999999998876 88875 4674 7899999998765 334443
No 106
>PRK06847 hypothetical protein; Provisional
Probab=85.20 E-value=2.5 Score=40.31 Aligned_cols=51 Identities=24% Similarity=0.393 Sum_probs=38.2
Q ss_pred HHHHHHHH---hccceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCChH
Q 014922 165 LPEAISKR---LGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSY 219 (416)
Q Consensus 165 l~~~L~~~---lg~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~~ 219 (416)
+.+.|.+. .+.+|+++++|++|+.++++ ++|++ .+|+ +++||.||.|....
T Consensus 109 l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~-~~v~~--~~g~-~~~ad~vI~AdG~~ 162 (375)
T PRK06847 109 LARILADAARAAGADVRLGTTVTAIEQDDDG-VTVTF--SDGT-TGRYDLVVGADGLY 162 (375)
T ss_pred HHHHHHHHHHHhCCEEEeCCEEEEEEEcCCE-EEEEE--cCCC-EEEcCEEEECcCCC
Confidence 34444443 35689999999999988776 77764 4664 78999999998763
No 107
>PRK06996 hypothetical protein; Provisional
Probab=84.60 E-value=2.7 Score=40.60 Aligned_cols=59 Identities=20% Similarity=0.165 Sum_probs=41.1
Q ss_pred HHHHHHHHh---ccceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCC--hHHHHhc
Q 014922 165 LPEAISKRL---GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVP--SYVASSL 224 (416)
Q Consensus 165 l~~~L~~~l---g~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p--~~~~~~l 224 (416)
|-+.|.+.+ +.+++.+++|++|+.++++ |+|++.+.+|.++++||.||-|-- ...+.+.
T Consensus 117 l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~-v~v~~~~~~g~~~i~a~lvIgADG~~~s~~r~~ 180 (398)
T PRK06996 117 LVAALARAVRGTPVRWLTSTTAHAPAQDADG-VTLALGTPQGARTLRARIAVQAEGGLFHDQKAD 180 (398)
T ss_pred HHHHHHHHHHhCCCEEEcCCeeeeeeecCCe-EEEEECCCCcceEEeeeEEEECCCCCchHHHHH
Confidence 444454443 5689999999999988887 888764333434799999999955 2444444
No 108
>PRK07121 hypothetical protein; Validated
Probab=84.18 E-value=3.7 Score=40.94 Aligned_cols=57 Identities=18% Similarity=0.248 Sum_probs=38.9
Q ss_pred HhHHHHHHHHHh---ccceecCceeeeEEEcCC-CceEEEEeCCCCceEEec-CEEEEcCCh
Q 014922 162 LTMLPEAISKRL---GSKVKLSWKLSGVKKLDS-GEYSLTYETPEGLVSLRS-RSVVMTVPS 218 (416)
Q Consensus 162 ~~~l~~~L~~~l---g~~I~l~~~V~~I~~~~~-~~v~v~~~~~~g~~~~~a-d~VI~a~p~ 218 (416)
...+.+.|.+.+ +.+|+++++|++|..+++ +.+.|.+...++...+.| +.||+|+-.
T Consensus 176 g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg 237 (492)
T PRK07121 176 GAMLMDPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARRYGETVAIRARKGVVLAAGG 237 (492)
T ss_pred hHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEeCCcEEEEEeCCEEEECCCC
Confidence 345677776654 569999999999988654 423354433333346788 999999864
No 109
>PRK06753 hypothetical protein; Provisional
Probab=84.15 E-value=2.8 Score=39.99 Aligned_cols=58 Identities=7% Similarity=0.031 Sum_probs=43.1
Q ss_pred HHHHHHHHHhc-cceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCCh-HHHHhcc
Q 014922 164 MLPEAISKRLG-SKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPS-YVASSLL 225 (416)
Q Consensus 164 ~l~~~L~~~lg-~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~-~~~~~ll 225 (416)
.|-+.|.+.+. .+|+++++|++|+.++++ ++|++ .+|. ++++|.||-|--. ..+++.+
T Consensus 99 ~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~-v~v~~--~~g~-~~~~~~vigadG~~S~vR~~~ 158 (373)
T PRK06753 99 TLIDIIKSYVKEDAIFTGKEVTKIENETDK-VTIHF--ADGE-SEAFDLCIGADGIHSKVRQSV 158 (373)
T ss_pred HHHHHHHHhCCCceEEECCEEEEEEecCCc-EEEEE--CCCC-EEecCEEEECCCcchHHHHHh
Confidence 45666666663 479999999999988776 88874 4664 7899999999765 4455544
No 110
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=84.06 E-value=3.2 Score=39.10 Aligned_cols=42 Identities=12% Similarity=0.164 Sum_probs=29.6
Q ss_pred ceecCceeeeEEEcCCCceEEEEeC-C-CCceEEecCEEEEcCC
Q 014922 176 KVKLSWKLSGVKKLDSGEYSLTYET-P-EGLVSLRSRSVVMTVP 217 (416)
Q Consensus 176 ~I~l~~~V~~I~~~~~~~v~v~~~~-~-~g~~~~~ad~VI~a~p 217 (416)
+|+.++.|++++..+++.|++++.. . +...++++|+||+|+-
T Consensus 295 ~l~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~D~VilATG 338 (341)
T PF13434_consen 295 RLLPNTEVTSAEQDGDGGVRLTLRHRQTGEEETLEVDAVILATG 338 (341)
T ss_dssp EEETTEEEEEEEEES-SSEEEEEEETTT--EEEEEESEEEE---
T ss_pred EEeCCCEEEEEEECCCCEEEEEEEECCCCCeEEEecCEEEEcCC
Confidence 6889999999999885349988753 2 2235789999999985
No 111
>PRK06370 mercuric reductase; Validated
Probab=83.68 E-value=3.7 Score=40.56 Aligned_cols=46 Identities=17% Similarity=0.282 Sum_probs=33.4
Q ss_pred HhccceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCCh
Q 014922 172 RLGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPS 218 (416)
Q Consensus 172 ~lg~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~ 218 (416)
..|.+|++++.|.+|+..+++ +.|.+...++..++++|.||+++..
T Consensus 224 ~~GV~i~~~~~V~~i~~~~~~-~~v~~~~~~~~~~i~~D~Vi~A~G~ 269 (463)
T PRK06370 224 REGIDVRLNAECIRVERDGDG-IAVGLDCNGGAPEITGSHILVAVGR 269 (463)
T ss_pred hCCCEEEeCCEEEEEEEcCCE-EEEEEEeCCCceEEEeCEEEECcCC
Confidence 346799999999999887665 5555432233347999999999865
No 112
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=83.52 E-value=3.4 Score=40.79 Aligned_cols=47 Identities=26% Similarity=0.285 Sum_probs=33.8
Q ss_pred HhccceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCChH
Q 014922 172 RLGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSY 219 (416)
Q Consensus 172 ~lg~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~~ 219 (416)
..|.+|+++++|++|+.++++ +.+.+...++.++++||.||+++...
T Consensus 225 ~~gV~i~~~~~V~~i~~~~~~-v~v~~~~gg~~~~i~~D~vi~a~G~~ 271 (462)
T PRK06416 225 KRGIKIKTGAKAKKVEQTDDG-VTVTLEDGGKEETLEADYVLVAVGRR 271 (462)
T ss_pred HcCCEEEeCCEEEEEEEeCCE-EEEEEEeCCeeEEEEeCEEEEeeCCc
Confidence 336799999999999987665 77664321111478999999997653
No 113
>PRK07045 putative monooxygenase; Reviewed
Probab=83.28 E-value=3 Score=40.01 Aligned_cols=57 Identities=12% Similarity=0.183 Sum_probs=39.7
Q ss_pred HHHHHHHHh----ccceecCceeeeEEEcCCCc-eEEEEeCCCCceEEecCEEEEcCCh-HHHHhc
Q 014922 165 LPEAISKRL----GSKVKLSWKLSGVKKLDSGE-YSLTYETPEGLVSLRSRSVVMTVPS-YVASSL 224 (416)
Q Consensus 165 l~~~L~~~l----g~~I~l~~~V~~I~~~~~~~-v~v~~~~~~g~~~~~ad~VI~a~p~-~~~~~l 224 (416)
|-+.|.+.+ +.+|+++++|++|+.++++. +.|+ ..+|+ ++++|.||.|--. ..+++.
T Consensus 108 l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~--~~~g~-~~~~~~vIgADG~~S~vR~~ 170 (388)
T PRK07045 108 LRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVT--LSDGE-RVAPTVLVGADGARSMIRDD 170 (388)
T ss_pred HHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEE--eCCCC-EEECCEEEECCCCChHHHHH
Confidence 444455443 46899999999999877662 3455 35674 8999999988765 445553
No 114
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=83.09 E-value=3.7 Score=40.54 Aligned_cols=46 Identities=20% Similarity=0.242 Sum_probs=33.4
Q ss_pred HhccceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCCh
Q 014922 172 RLGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPS 218 (416)
Q Consensus 172 ~lg~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~ 218 (416)
..+.+|++++.|++|+.++++ +.+++...++.+++++|.||+++..
T Consensus 219 ~~gV~i~~~~~V~~i~~~~~~-~~v~~~~~~~~~~i~~D~ViiA~G~ 264 (463)
T TIGR02053 219 EEGIEVVTSAQVKAVSVRGGG-KIITVEKPGGQGEVEADELLVATGR 264 (463)
T ss_pred HcCCEEEcCcEEEEEEEcCCE-EEEEEEeCCCceEEEeCEEEEeECC
Confidence 336799999999999886554 6665433233357999999999764
No 115
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=82.94 E-value=3.8 Score=41.72 Aligned_cols=56 Identities=13% Similarity=0.090 Sum_probs=38.0
Q ss_pred hHHHHHHHHHh---ccceecCceeeeEEEcCCCceEEEEeCCCCceEEecC-EEEEcCCh
Q 014922 163 TMLPEAISKRL---GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSR-SVVMTVPS 218 (416)
Q Consensus 163 ~~l~~~L~~~l---g~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad-~VI~a~p~ 218 (416)
..+.++|.+.+ +.+|+++++|++|..++++.+.|.+...++...+.++ .||+|+-.
T Consensus 214 ~~l~~~L~~~~~~~Gv~i~~~~~v~~l~~~~g~V~GV~~~~~~~~~~i~a~k~VVlAtGg 273 (574)
T PRK12842 214 NALAARLAKSALDLGIPILTGTPARELLTEGGRVVGARVIDAGGERRITARRGVVLACGG 273 (574)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEeeCCEEEEEEEEcCCceEEEEeCCEEEEcCCC
Confidence 45666666543 6799999999999987664223544444453357786 79988854
No 116
>PRK05868 hypothetical protein; Validated
Probab=82.80 E-value=3.7 Score=39.28 Aligned_cols=57 Identities=11% Similarity=0.013 Sum_probs=40.6
Q ss_pred HHHHHHHHh--ccceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCCh-HHHHhcc
Q 014922 165 LPEAISKRL--GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPS-YVASSLL 225 (416)
Q Consensus 165 l~~~L~~~l--g~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~-~~~~~ll 225 (416)
|.+.|.+.+ +.+|++++.|++|+.++++ ++|++ .+|. +++||.||-|--. ..+++.+
T Consensus 107 L~~~l~~~~~~~v~i~~~~~v~~i~~~~~~-v~v~~--~dg~-~~~adlvIgADG~~S~vR~~~ 166 (372)
T PRK05868 107 LVELLYGATQPSVEYLFDDSISTLQDDGDS-VRVTF--ERAA-AREFDLVIGADGLHSNVRRLV 166 (372)
T ss_pred HHHHHHHhccCCcEEEeCCEEEEEEecCCe-EEEEE--CCCC-eEEeCEEEECCCCCchHHHHh
Confidence 444444433 4589999999999987776 88875 4664 7899999988654 4555553
No 117
>PRK06834 hypothetical protein; Provisional
Probab=82.51 E-value=3.4 Score=41.18 Aligned_cols=50 Identities=18% Similarity=0.283 Sum_probs=37.7
Q ss_pred HhccceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCCh-HHHHhcc
Q 014922 172 RLGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPS-YVASSLL 225 (416)
Q Consensus 172 ~lg~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~-~~~~~ll 225 (416)
..+.+|+.+++|++|+.++++ +.|++ .+|. +++||.||.|.-. +.+.+.+
T Consensus 112 ~~gv~i~~~~~v~~v~~~~~~-v~v~~--~~g~-~i~a~~vVgADG~~S~vR~~l 162 (488)
T PRK06834 112 ELGVPIYRGREVTGFAQDDTG-VDVEL--SDGR-TLRAQYLVGCDGGRSLVRKAA 162 (488)
T ss_pred hCCCEEEcCCEEEEEEEcCCe-EEEEE--CCCC-EEEeCEEEEecCCCCCcHhhc
Confidence 346789999999999998886 88874 4564 7999999998755 3344443
No 118
>PRK07190 hypothetical protein; Provisional
Probab=82.24 E-value=3.7 Score=40.89 Aligned_cols=49 Identities=20% Similarity=0.197 Sum_probs=38.1
Q ss_pred HhccceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCChH-HHHhc
Q 014922 172 RLGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSY-VASSL 224 (416)
Q Consensus 172 ~lg~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~~-~~~~l 224 (416)
.+|.+|+++++|++|++++++ +.+++ .+|+ +++|+.||.|.-.. .+++.
T Consensus 121 ~~Gv~v~~~~~v~~l~~~~~~-v~v~~--~~g~-~v~a~~vVgADG~~S~vR~~ 170 (487)
T PRK07190 121 EAGAAVKRNTSVVNIELNQAG-CLTTL--SNGE-RIQSRYVIGADGSRSFVRNH 170 (487)
T ss_pred HCCCEEEeCCEEEEEEEcCCe-eEEEE--CCCc-EEEeCEEEECCCCCHHHHHH
Confidence 346799999999999998887 77764 4564 89999999998763 34444
No 119
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=81.73 E-value=3.2 Score=40.16 Aligned_cols=58 Identities=21% Similarity=0.291 Sum_probs=42.1
Q ss_pred HHHHHHHHHh---ccceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCCh-HHHHhcc
Q 014922 164 MLPEAISKRL---GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPS-YVASSLL 225 (416)
Q Consensus 164 ~l~~~L~~~l---g~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~-~~~~~ll 225 (416)
.+.+.|.+.+ +.+|+.+++|++|+.++++ |+|++ .+|. +++||.||.|.-. ..+++.+
T Consensus 113 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~-v~v~~--~~g~-~~~a~~vVgAdG~~S~vR~~l 174 (405)
T PRK05714 113 VVQDALLERLHDSDIGLLANARLEQMRRSGDD-WLLTL--ADGR-QLRAPLVVAADGANSAVRRLA 174 (405)
T ss_pred HHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCe-EEEEE--CCCC-EEEeCEEEEecCCCchhHHhc
Confidence 3444554443 5689999999999998886 88874 4664 7899999988755 4555654
No 120
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=81.48 E-value=4.6 Score=40.43 Aligned_cols=54 Identities=13% Similarity=0.153 Sum_probs=36.8
Q ss_pred HHHHHHHHHh---ccceecCceeeeEEEcCCCceEEEEeCCCCc-eEEecCEEEEcCC
Q 014922 164 MLPEAISKRL---GSKVKLSWKLSGVKKLDSGEYSLTYETPEGL-VSLRSRSVVMTVP 217 (416)
Q Consensus 164 ~l~~~L~~~l---g~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~-~~~~ad~VI~a~p 217 (416)
.+.+.|.+.+ +.+|+++++|++|..++++.+.|.+...+|+ .++.+|.||+|+-
T Consensus 191 ~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~g~V~Gv~~~~~~g~~~~i~a~~VVlAtG 248 (506)
T PRK06481 191 YLVDGLLKNVQERKIPLFVNADVTKITEKDGKVTGVKVKINGKETKTISSKAVVVTTG 248 (506)
T ss_pred HHHHHHHHHHHHcCCeEEeCCeeEEEEecCCEEEEEEEEeCCCeEEEEecCeEEEeCC
Confidence 3566666544 5799999999999876654222443333432 4689999999985
No 121
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=81.33 E-value=3.2 Score=39.79 Aligned_cols=47 Identities=15% Similarity=0.133 Sum_probs=36.7
Q ss_pred ccceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCCh-HHHHhc
Q 014922 174 GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPS-YVASSL 224 (416)
Q Consensus 174 g~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~-~~~~~l 224 (416)
+.+|+.+++|++++.++++ ++|++ .+|. +++||.||.|.-. +.+++.
T Consensus 125 ~i~i~~~~~v~~~~~~~~~-~~v~~--~~g~-~~~~~lvIgADG~~S~vR~~ 172 (384)
T PRK08849 125 NLTLMCPEKLADLEFSAEG-NRVTL--ESGA-EIEAKWVIGADGANSQVRQL 172 (384)
T ss_pred CeEEECCCceeEEEEcCCe-EEEEE--CCCC-EEEeeEEEEecCCCchhHHh
Confidence 4589999999999998886 88875 4664 8999999999765 334443
No 122
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=80.90 E-value=3.1 Score=39.55 Aligned_cols=39 Identities=13% Similarity=0.193 Sum_probs=29.6
Q ss_pred hccceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCChHH
Q 014922 173 LGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYV 220 (416)
Q Consensus 173 lg~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~~~ 220 (416)
.|++|+.+++|++|+.. .|+ +.+| .++||+||+|+.+..
T Consensus 159 ~Gv~i~~~t~V~~i~~~-----~v~--t~~g--~i~a~~VV~A~G~~s 197 (365)
T TIGR03364 159 HGVEFHWNTAVTSVETG-----TVR--TSRG--DVHADQVFVCPGADF 197 (365)
T ss_pred CCCEEEeCCeEEEEecC-----eEE--eCCC--cEEeCEEEECCCCCh
Confidence 36799999999999742 343 4567 568999999998753
No 123
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=80.58 E-value=5.7 Score=40.52 Aligned_cols=55 Identities=13% Similarity=0.145 Sum_probs=35.9
Q ss_pred HHHHHHHHH---hccceecCceeeeEEEcCCCce-EEEEeCCCCceEEecC-EEEEcCCh
Q 014922 164 MLPEAISKR---LGSKVKLSWKLSGVKKLDSGEY-SLTYETPEGLVSLRSR-SVVMTVPS 218 (416)
Q Consensus 164 ~l~~~L~~~---lg~~I~l~~~V~~I~~~~~~~v-~v~~~~~~g~~~~~ad-~VI~a~p~ 218 (416)
.++..|.+. .+.+|+++++|++|..++++.| .|.+...++...+.|+ .||+|+-.
T Consensus 214 ~~~~~l~~~~~~~gv~i~~~~~~~~Li~d~~g~V~Gv~~~~~~~~~~i~a~~aVilAtGG 273 (584)
T PRK12835 214 SLVARLRLALKDAGVPLWLDSPMTELITDPDGAVVGAVVEREGRTLRIGARRGVILATGG 273 (584)
T ss_pred HHHHHHHHHHHhCCceEEeCCEEEEEEECCCCcEEEEEEEeCCcEEEEEeceeEEEecCc
Confidence 455444443 4679999999999998754324 3554443433467887 69998854
No 124
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=80.44 E-value=5.5 Score=28.30 Aligned_cols=33 Identities=21% Similarity=0.303 Sum_probs=25.1
Q ss_pred HHHHHHHHhccceecCceeeeEEEcCCCceEEEE
Q 014922 165 LPEAISKRLGSKVKLSWKLSGVKKLDSGEYSLTY 198 (416)
Q Consensus 165 l~~~L~~~lg~~I~l~~~V~~I~~~~~~~v~v~~ 198 (416)
......+..|.+|++++.|++|+.++++ ++|++
T Consensus 45 ~~~~~l~~~gV~v~~~~~v~~i~~~~~~-~~V~~ 77 (80)
T PF00070_consen 45 ILEEYLRKRGVEVHTNTKVKEIEKDGDG-VEVTL 77 (80)
T ss_dssp HHHHHHHHTTEEEEESEEEEEEEEETTS-EEEEE
T ss_pred HHHHHHHHCCCEEEeCCEEEEEEEeCCE-EEEEE
Confidence 3333334447799999999999999988 77775
No 125
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=80.28 E-value=5.4 Score=40.04 Aligned_cols=57 Identities=14% Similarity=0.135 Sum_probs=38.3
Q ss_pred HHHHHHHHH---hccceecCceeeeEEEcCCCceEEEEe-CCCCc-eEEecCEEEEcCChHH
Q 014922 164 MLPEAISKR---LGSKVKLSWKLSGVKKLDSGEYSLTYE-TPEGL-VSLRSRSVVMTVPSYV 220 (416)
Q Consensus 164 ~l~~~L~~~---lg~~I~l~~~V~~I~~~~~~~v~v~~~-~~~g~-~~~~ad~VI~a~p~~~ 220 (416)
.+..++++. .|++|..+++|++|+.++++.+.|++. +.+|+ .++.|+.||.|+.+..
T Consensus 129 ~l~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa 190 (516)
T TIGR03377 129 RLVAANVLDAQEHGARIFTYTKVTGLIREGGRVTGVKVEDHKTGEEERIEAQVVINAAGIWA 190 (516)
T ss_pred HHHHHHHHHHHHcCCEEEcCcEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCEEEECCCcch
Confidence 345555444 378999999999999876652234432 22332 3689999999998753
No 126
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=80.22 E-value=3.8 Score=37.58 Aligned_cols=43 Identities=16% Similarity=0.236 Sum_probs=33.4
Q ss_pred ceecCceeeeEEEcCCCceEEEEeCCCCc-eEEecCEEEEcCCh
Q 014922 176 KVKLSWKLSGVKKLDSGEYSLTYETPEGL-VSLRSRSVVMTVPS 218 (416)
Q Consensus 176 ~I~l~~~V~~I~~~~~~~v~v~~~~~~g~-~~~~ad~VI~a~p~ 218 (416)
+|.+|++|+.|...+++...|.|...+|+ ..+.+|+||+|+-.
T Consensus 161 ki~~nskvv~il~n~gkVsgVeymd~sgek~~~~~~~VVlatGG 204 (477)
T KOG2404|consen 161 KILLNSKVVDILRNNGKVSGVEYMDASGEKSKIIGDAVVLATGG 204 (477)
T ss_pred hhhhcceeeeeecCCCeEEEEEEEcCCCCccceecCceEEecCC
Confidence 79999999999987776334777666665 45778999998854
No 127
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=79.60 E-value=5.3 Score=40.55 Aligned_cols=55 Identities=15% Similarity=0.087 Sum_probs=36.3
Q ss_pred HHHHHHHHHh---ccceecCceeeeEEEcCCCceEEEEeCCCCceEEecC-EEEEcCCh
Q 014922 164 MLPEAISKRL---GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSR-SVVMTVPS 218 (416)
Q Consensus 164 ~l~~~L~~~l---g~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad-~VI~a~p~ 218 (416)
.|...|.+.+ +.+|+++++|++|..++++.+.|.+...++...+.++ .||+|+-.
T Consensus 209 ~l~~~l~~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~g~~~~i~A~~aVIlAtGG 267 (557)
T PRK12844 209 ALIGRMLEAALAAGVPLWTNTPLTELIVEDGRVVGVVVVRDGREVLIRARRGVLLASGG 267 (557)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEEEEEECCeEEEEEecceEEEecCC
Confidence 3555555543 6799999999999987665333544333333457784 79998854
No 128
>PRK06116 glutathione reductase; Validated
Probab=79.55 E-value=5.1 Score=39.39 Aligned_cols=51 Identities=18% Similarity=0.332 Sum_probs=36.1
Q ss_pred HHHHHHHHh---ccceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCCh
Q 014922 165 LPEAISKRL---GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPS 218 (416)
Q Consensus 165 l~~~L~~~l---g~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~ 218 (416)
+.+.+.+.+ |.+|++++.|++|+.++++.+.|.+ .+|. +++||.||+++..
T Consensus 210 ~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~~v~~--~~g~-~i~~D~Vv~a~G~ 263 (450)
T PRK06116 210 IRETLVEEMEKKGIRLHTNAVPKAVEKNADGSLTLTL--EDGE-TLTVDCLIWAIGR 263 (450)
T ss_pred HHHHHHHHHHHCCcEEECCCEEEEEEEcCCceEEEEE--cCCc-EEEeCEEEEeeCC
Confidence 444444444 5689999999999876554255653 4564 7999999999744
No 129
>PRK08163 salicylate hydroxylase; Provisional
Probab=79.28 E-value=4.3 Score=39.05 Aligned_cols=41 Identities=10% Similarity=0.109 Sum_probs=33.1
Q ss_pred cceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCChH
Q 014922 175 SKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSY 219 (416)
Q Consensus 175 ~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~~ 219 (416)
.+|+++++|++|+.++++ ++|+. .+|. +++||.||.|.-..
T Consensus 125 v~~~~~~~v~~i~~~~~~-v~v~~--~~g~-~~~ad~vV~AdG~~ 165 (396)
T PRK08163 125 VEFRTSTHVVGIEQDGDG-VTVFD--QQGN-RWTGDALIGCDGVK 165 (396)
T ss_pred cEEEeCCEEEEEecCCCc-eEEEE--cCCC-EEecCEEEECCCcC
Confidence 589999999999987776 88764 4664 78999999997553
No 130
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=79.23 E-value=4.8 Score=41.50 Aligned_cols=57 Identities=7% Similarity=0.117 Sum_probs=43.1
Q ss_pred HHHHHHHHHhcc-ceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCChH-HHHhc
Q 014922 164 MLPEAISKRLGS-KVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSY-VASSL 224 (416)
Q Consensus 164 ~l~~~L~~~lg~-~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~~-~~~~l 224 (416)
.|.+.|.+.++. .|+++++|++|+.++++ |+|++ .+|. ++++|.||.|--.. .+++.
T Consensus 195 ~L~~~L~~alg~~~i~~g~~V~~I~~~~d~-VtV~~--~dG~-ti~aDlVVGADG~~S~vR~~ 253 (668)
T PLN02927 195 TLQQILARAVGEDVIRNESNVVDFEDSGDK-VTVVL--ENGQ-RYEGDLLVGADGIWSKVRNN 253 (668)
T ss_pred HHHHHHHhhCCCCEEEcCCEEEEEEEeCCE-EEEEE--CCCC-EEEcCEEEECCCCCcHHHHH
Confidence 477788888865 47899999999988776 88874 4664 78999999997653 34443
No 131
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=79.23 E-value=6.7 Score=38.76 Aligned_cols=53 Identities=19% Similarity=0.282 Sum_probs=36.7
Q ss_pred HHHHHHHHh---ccceecCceeeeEEEcCCCceEEEEeCCCCc-eEEecCEEEEcCCh
Q 014922 165 LPEAISKRL---GSKVKLSWKLSGVKKLDSGEYSLTYETPEGL-VSLRSRSVVMTVPS 218 (416)
Q Consensus 165 l~~~L~~~l---g~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~-~~~~ad~VI~a~p~ 218 (416)
+.+.+.+.+ |.+|+++++|++|+.++++ +.+++.+.+|. +++++|.||+++-.
T Consensus 215 ~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~-~~v~~~~~~g~~~~i~~D~vi~a~G~ 271 (466)
T PRK07818 215 VSKEIAKQYKKLGVKILTGTKVESIDDNGSK-VTVTVSKKDGKAQELEADKVLQAIGF 271 (466)
T ss_pred HHHHHHHHHHHCCCEEEECCEEEEEEEeCCe-EEEEEEecCCCeEEEEeCEEEECcCc
Confidence 444444444 5799999999999876554 66655323453 37899999999754
No 132
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=78.99 E-value=5 Score=36.69 Aligned_cols=49 Identities=14% Similarity=0.309 Sum_probs=35.9
Q ss_pred HHHHHHHH---hccceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCCh
Q 014922 165 LPEAISKR---LGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPS 218 (416)
Q Consensus 165 l~~~L~~~---lg~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~ 218 (416)
+.+.+.+. .+.++++ +.|++|+..+++ +.|+. .+|. ++.||+||+|+-.
T Consensus 59 ~~~~l~~~~~~~gv~~~~-~~v~~v~~~~~~-~~v~~--~~~~-~~~~d~liiAtG~ 110 (300)
T TIGR01292 59 LMEKMKEQAVKFGAEIIY-EEVIKVDLSDRP-FKVKT--GDGK-EYTAKAVIIATGA 110 (300)
T ss_pred HHHHHHHHHHHcCCeEEE-EEEEEEEecCCe-eEEEe--CCCC-EEEeCEEEECCCC
Confidence 44444443 3568888 899999987765 77763 4554 7999999999976
No 133
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=78.86 E-value=6 Score=40.38 Aligned_cols=54 Identities=15% Similarity=0.167 Sum_probs=36.1
Q ss_pred HHHHHHHHHh---ccceecCceeeeEEEcCCCceEEEEeCCCCc-eEEec-CEEEEcCCh
Q 014922 164 MLPEAISKRL---GSKVKLSWKLSGVKKLDSGEYSLTYETPEGL-VSLRS-RSVVMTVPS 218 (416)
Q Consensus 164 ~l~~~L~~~l---g~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~-~~~~a-d~VI~a~p~ 218 (416)
.|..+|.+.+ +.+|+++++|++|..++++.+.|.+.. +|. ..+.+ +.||+|+-.
T Consensus 222 ~l~~aL~~~~~~~Gv~i~~~t~v~~Li~~~g~V~GV~~~~-~g~~~~i~A~~~VVlAtGg 280 (578)
T PRK12843 222 ALIGRLLYSLRARGVRILTQTDVESLETDHGRVIGATVVQ-GGVRRRIRARGGVVLATGG 280 (578)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEeeCCEEEEEEEec-CCeEEEEEccceEEECCCC
Confidence 4666666654 579999999999987655423354432 442 35676 689999854
No 134
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=78.82 E-value=7.1 Score=36.17 Aligned_cols=56 Identities=20% Similarity=0.340 Sum_probs=39.3
Q ss_pred HHHhccceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCChHHHHhccCC
Q 014922 170 SKRLGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYVASSLLRP 227 (416)
Q Consensus 170 ~~~lg~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~~~~~~ll~~ 227 (416)
++.+|+.++-+..|..+...+.....|.+.|.+|. .+.|+.+|+|+-++.. +++++
T Consensus 163 ~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs-~Y~akkiI~t~GaWi~-klL~~ 218 (399)
T KOG2820|consen 163 ARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGS-IYHAKKIIFTVGAWIN-KLLPT 218 (399)
T ss_pred HHHcCeEEecCcceeeEeeccCCCceeEEEeccCC-eeecceEEEEecHHHH-hhcCc
Confidence 34568899999999999864322133333466785 6999999999998754 45544
No 135
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=78.46 E-value=7.7 Score=37.90 Aligned_cols=57 Identities=11% Similarity=0.186 Sum_probs=40.1
Q ss_pred hhhhHhHHHHHHHHHhccceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCCh
Q 014922 158 FRKGLTMLPEAISKRLGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPS 218 (416)
Q Consensus 158 ~~gG~~~l~~~L~~~lg~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~ 218 (416)
.+.-+..+....++..|.+|+.+++|++|..++++ +.+. .+ +|. +++||.||.|.-.
T Consensus 106 ~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~g~-v~~v-~~-~g~-~i~A~~VI~A~G~ 162 (428)
T PRK10157 106 LRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRDGK-VVGV-EA-DGD-VIEAKTVILADGV 162 (428)
T ss_pred EHHHHHHHHHHHHHHCCCEEECCCEEEEEEEeCCE-EEEE-Ec-CCc-EEECCEEEEEeCC
Confidence 34556665555555668899999999999887665 5332 23 443 7899999999865
No 136
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=78.38 E-value=6.2 Score=38.74 Aligned_cols=51 Identities=29% Similarity=0.507 Sum_probs=37.0
Q ss_pred HHHHHHHHh---ccceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCC
Q 014922 165 LPEAISKRL---GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVP 217 (416)
Q Consensus 165 l~~~L~~~l---g~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p 217 (416)
+.+.+.+.+ +.+++++++|++++..+++ +.+++++.++. ++++|.|++|+-
T Consensus 216 i~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~-v~v~~~~g~~~-~~~ad~vLvAiG 269 (454)
T COG1249 216 ISKELTKQLEKGGVKILLNTKVTAVEKKDDG-VLVTLEDGEGG-TIEADAVLVAIG 269 (454)
T ss_pred HHHHHHHHHHhCCeEEEccceEEEEEecCCe-EEEEEecCCCC-EEEeeEEEEccC
Confidence 344444444 4589999999999998887 88876433322 688999999974
No 137
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=78.34 E-value=6.4 Score=39.95 Aligned_cols=55 Identities=18% Similarity=0.182 Sum_probs=35.8
Q ss_pred HHHHHHHHHh---ccceecCceeeeEEEcCCCceEEEEeCCCCceEEecC-EEEEcCCh
Q 014922 164 MLPEAISKRL---GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSR-SVVMTVPS 218 (416)
Q Consensus 164 ~l~~~L~~~l---g~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad-~VI~a~p~ 218 (416)
.+...|.+.+ +.+|+++++|++|..++++.+.|.+...++...+.++ .||+|+..
T Consensus 209 ~~~~~L~~~~~~~gv~v~~~t~v~~l~~~~g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG 267 (557)
T PRK07843 209 ALAAGLRIGLQRAGVPVLLNTPLTDLYVEDGRVTGVHAAESGEPQLIRARRGVILASGG 267 (557)
T ss_pred HHHHHHHHHHHcCCCEEEeCCEEEEEEEeCCEEEEEEEEeCCcEEEEEeceeEEEccCC
Confidence 3555555544 5699999999999987654223544333333467886 69997654
No 138
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=78.23 E-value=7.2 Score=38.18 Aligned_cols=55 Identities=13% Similarity=0.132 Sum_probs=37.1
Q ss_pred HHHHHHHHHh---ccceecCceeeeEEEcCC-CceEEEEeCCCCc-eEEecCEEEEcCCh
Q 014922 164 MLPEAISKRL---GSKVKLSWKLSGVKKLDS-GEYSLTYETPEGL-VSLRSRSVVMTVPS 218 (416)
Q Consensus 164 ~l~~~L~~~l---g~~I~l~~~V~~I~~~~~-~~v~v~~~~~~g~-~~~~ad~VI~a~p~ 218 (416)
.+.+.|.+.+ +.+|+++++|++|..+++ +.+.|.+.+.++. +.+.++.||+|+-.
T Consensus 131 ~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg 190 (439)
T TIGR01813 131 EIVQKLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAKAVVLATGG 190 (439)
T ss_pred HHHHHHHHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEecceEEEecCC
Confidence 4566665544 679999999999998654 3223444444553 24688999999754
No 139
>PRK06126 hypothetical protein; Provisional
Probab=77.82 E-value=5.4 Score=40.33 Aligned_cols=51 Identities=18% Similarity=0.240 Sum_probs=37.3
Q ss_pred ccceecCceeeeEEEcCCCceEEEEeC-CCCc-eEEecCEEEEcCChHH-HHhcc
Q 014922 174 GSKVKLSWKLSGVKKLDSGEYSLTYET-PEGL-VSLRSRSVVMTVPSYV-ASSLL 225 (416)
Q Consensus 174 g~~I~l~~~V~~I~~~~~~~v~v~~~~-~~g~-~~~~ad~VI~a~p~~~-~~~ll 225 (416)
+.+|++++.|++|+.++++ +++++.. .+|+ .++++|.||.|.-..- +++.+
T Consensus 141 ~v~i~~~~~v~~i~~~~~~-v~v~~~~~~~g~~~~i~ad~vVgADG~~S~VR~~l 194 (545)
T PRK06126 141 GVTLRYGHRLTDFEQDADG-VTATVEDLDGGESLTIRADYLVGCDGARSAVRRSL 194 (545)
T ss_pred CceEEeccEEEEEEECCCe-EEEEEEECCCCcEEEEEEEEEEecCCcchHHHHhc
Confidence 4689999999999998876 7776532 3453 4789999999986633 44443
No 140
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=77.81 E-value=7.9 Score=38.42 Aligned_cols=53 Identities=19% Similarity=0.401 Sum_probs=37.1
Q ss_pred HHHHHHHHh---ccceecCceeeeEEEcCCCceEEEEeCCCCc-eEEecCEEEEcCCh
Q 014922 165 LPEAISKRL---GSKVKLSWKLSGVKKLDSGEYSLTYETPEGL-VSLRSRSVVMTVPS 218 (416)
Q Consensus 165 l~~~L~~~l---g~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~-~~~~ad~VI~a~p~ 218 (416)
+.+.+.+.+ |.+|++++.|++|+.++++ +.|.+...+|+ ..+++|.||+++..
T Consensus 226 ~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~-v~v~~~~~~g~~~~i~~D~vl~a~G~ 282 (475)
T PRK06327 226 VAKEAAKAFTKQGLDIHLGVKIGEIKTGGKG-VSVAYTDADGEAQTLEVDKLIVSIGR 282 (475)
T ss_pred HHHHHHHHHHHcCcEEEeCcEEEEEEEcCCE-EEEEEEeCCCceeEEEcCEEEEccCC
Confidence 444444444 5689999999999987665 76665333343 46899999999764
No 141
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=77.49 E-value=6 Score=39.69 Aligned_cols=54 Identities=15% Similarity=0.114 Sum_probs=34.7
Q ss_pred HHHHHHHH----hccceecCceeeeEEEcCCCceEEEEeCCCCceEEecC-EEEEcCCh
Q 014922 165 LPEAISKR----LGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSR-SVVMTVPS 218 (416)
Q Consensus 165 l~~~L~~~----lg~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad-~VI~a~p~ 218 (416)
+..+|.+. .+.+|+++++|++|..++++.+.|.....++...+.|+ .||+|+-.
T Consensus 175 l~~~l~~~~~~~~gv~i~~~t~~~~Li~~~g~v~Gv~~~~~g~~~~i~A~k~VIlAtGG 233 (513)
T PRK12837 175 LIGRFLAALARFPNARLRLNTPLVELVVEDGRVVGAVVERGGERRRVRARRGVLLAAGG 233 (513)
T ss_pred HHHHHHHHHHhCCCCEEEeCCEEEEEEecCCEEEEEEEEECCcEEEEEeCceEEEeCCC
Confidence 44444443 35699999999999887554223443333333468886 79988855
No 142
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=77.30 E-value=6.4 Score=37.67 Aligned_cols=43 Identities=28% Similarity=0.411 Sum_probs=33.7
Q ss_pred HhccceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCCh
Q 014922 172 RLGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPS 218 (416)
Q Consensus 172 ~lg~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~ 218 (416)
..|.+|+++++|++|+.++++ +.|.+ .+|. ++.||.||+++..
T Consensus 195 ~~gV~i~~~~~v~~i~~~~~~-~~v~~--~~g~-~i~~D~vI~a~G~ 237 (377)
T PRK04965 195 EMGVHLLLKSQLQGLEKTDSG-IRATL--DSGR-SIEVDAVIAAAGL 237 (377)
T ss_pred hCCCEEEECCeEEEEEccCCE-EEEEE--cCCc-EEECCEEEECcCC
Confidence 346789999999999987655 66664 4664 8999999999765
No 143
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=77.26 E-value=4.3 Score=38.30 Aligned_cols=56 Identities=18% Similarity=0.339 Sum_probs=38.2
Q ss_pred HhHHHHHHHHHhccceecCceeeeEEEcCCC---ceEEEEeCCCC-ceEEecCEEEEcCC
Q 014922 162 LTMLPEAISKRLGSKVKLSWKLSGVKKLDSG---EYSLTYETPEG-LVSLRSRSVVMTVP 217 (416)
Q Consensus 162 ~~~l~~~L~~~lg~~I~l~~~V~~I~~~~~~---~v~v~~~~~~g-~~~~~ad~VI~a~p 217 (416)
+....+-.+++++..++++++|++|+...++ .++|+..+.+| ..++.|++||+++.
T Consensus 97 f~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~G 156 (341)
T PF13434_consen 97 FNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLATG 156 (341)
T ss_dssp HHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE---
T ss_pred HHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECcC
Confidence 4445555666777679999999999987653 37777532333 25899999999875
No 144
>PLN02507 glutathione reductase
Probab=76.88 E-value=6.8 Score=39.16 Aligned_cols=41 Identities=15% Similarity=0.234 Sum_probs=32.7
Q ss_pred ccceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCCh
Q 014922 174 GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPS 218 (416)
Q Consensus 174 g~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~ 218 (416)
|.+|++++.|++|+.++++ +.|.. .+|. ++++|.||+++..
T Consensus 258 GI~i~~~~~V~~i~~~~~~-~~v~~--~~g~-~i~~D~vl~a~G~ 298 (499)
T PLN02507 258 GINLHPRTNLTQLTKTEGG-IKVIT--DHGE-EFVADVVLFATGR 298 (499)
T ss_pred CCEEEeCCEEEEEEEeCCe-EEEEE--CCCc-EEEcCEEEEeecC
Confidence 6799999999999876665 66653 4664 7999999999764
No 145
>PF03275 GLF: UDP-galactopyranose mutase; InterPro: IPR015899 UDP-galactopyranose mutase (5.4.99.9 from EC) is involved in the conversion of UDP-GALP into UDP-GALF through a 2-keto intermediate, and contains FAD as a cofactor. The gene is known as glf, ceoA, and rfbD. It is known experimentally in Escherichia coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.; GO: 0008767 UDP-galactopyranose mutase activity; PDB: 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 1V0J_D 3MJ4_G 3HDQ_E ....
Probab=76.85 E-value=0.15 Score=43.49 Aligned_cols=96 Identities=17% Similarity=0.177 Sum_probs=57.5
Q ss_pred HhhhhhhcccccCCcchhhHHHhhHHHHHHHHhcCChHHHHHHHHHhhccCCCCCCCCCCCCCCCCceeehhhhHhHHHH
Q 014922 88 RLIEPFCSGVYAGDPSKLSMKAAFGKVWKLEQTGGSIIGGTFKAIQEKNKAPKQPRDPRLPKPKGQTVGSFRKGLTMLPE 167 (416)
Q Consensus 88 ~~~~p~~~~~~~~~~~~lS~~~~~~~~~~~~~~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~ 167 (416)
+++.++..+.|+.+|++|++. ++.++.- ..+ +|.+ -+...-...+++|...+.+
T Consensus 1 k~f~~YT~KQWg~~p~eL~~~-v~~RvPv---r~~--------------------~d~~--YF~d~yQgiP~~GYT~~fe 54 (204)
T PF03275_consen 1 KFFKGYTKKQWGVDPEELDAS-VIKRVPV---RFS--------------------YDDR--YFNDKYQGIPKDGYTKMFE 54 (204)
T ss_dssp HHTHHHHHHHHTSSGGGSBCC-CCSCS-B---BSS--------------------S--B--S--SSEEEEETTHHHHHHH
T ss_pred CccCccCHHHcCCChHHCCHH-HhcCCce---eeC--------------------CCCc--cccChhhhCchhCHHHHHH
Confidence 467899999999999999873 3333320 000 0110 1122334788999999999
Q ss_pred HHHHHhccceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCChHHHHh
Q 014922 168 AISKRLGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYVASS 223 (416)
Q Consensus 168 ~L~~~lg~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~~~~~~ 223 (416)
.|.+.=+.+|+||+....+.. . ++ ...+|.||.|.|+..+-.
T Consensus 55 ~mL~h~~I~v~l~td~~~~~~-------~-----~~--~~~~~~viyTG~iDe~F~ 96 (204)
T PF03275_consen 55 NMLDHPNIEVRLNTDFFDIIE-------F-----GG--EPYADKVIYTGPIDEYFD 96 (204)
T ss_dssp HHC-STTEEEECS--GGGCHH-------H-----HC--CCTEEEEEE-S-HHHHTT
T ss_pred HHhCCCceEEEcCCCHHHhhc-------c-----cc--cccCCeEEEeCCHHHHhC
Confidence 998654558888886555443 0 12 345799999999876644
No 146
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=76.72 E-value=8.5 Score=38.57 Aligned_cols=47 Identities=17% Similarity=0.340 Sum_probs=34.9
Q ss_pred hccceecCceeeeEEEcCCCceEEEEeC-CCCc-eEEecCEEEEcCChHH
Q 014922 173 LGSKVKLSWKLSGVKKLDSGEYSLTYET-PEGL-VSLRSRSVVMTVPSYV 220 (416)
Q Consensus 173 lg~~I~l~~~V~~I~~~~~~~v~v~~~~-~~g~-~~~~ad~VI~a~p~~~ 220 (416)
.|.+|+.+++|++|..++++ +.|++.. .+|+ .++.|+.||.|+.+..
T Consensus 168 ~Ga~i~~~~~V~~i~~~~~~-~~v~~~~~~~g~~~~i~a~~VVnAaG~wa 216 (508)
T PRK12266 168 RGAEILTRTRVVSARRENGL-WHVTLEDTATGKRYTVRARALVNAAGPWV 216 (508)
T ss_pred cCCEEEcCcEEEEEEEeCCE-EEEEEEEcCCCCEEEEEcCEEEECCCccH
Confidence 36799999999999887664 7766432 1232 3689999999998743
No 147
>PRK07512 L-aspartate oxidase; Provisional
Probab=76.69 E-value=4.9 Score=40.31 Aligned_cols=56 Identities=18% Similarity=0.111 Sum_probs=37.4
Q ss_pred HHHHHHHHHh----ccceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCChH
Q 014922 164 MLPEAISKRL----GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSY 219 (416)
Q Consensus 164 ~l~~~L~~~l----g~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~~ 219 (416)
.+.++|.+.+ +.+|+.+++|++|..++++.+.|...+.++...+.|+.||+|+-..
T Consensus 137 ~l~~~L~~~~~~~~gV~i~~~~~v~~Li~~~g~v~Gv~~~~~~~~~~i~Ak~VVLATGG~ 196 (513)
T PRK07512 137 AIMRALIAAVRATPSITVLEGAEARRLLVDDGAVAGVLAATAGGPVVLPARAVVLATGGI 196 (513)
T ss_pred HHHHHHHHHHHhCCCCEEEECcChhheeecCCEEEEEEEEeCCeEEEEECCEEEEcCCCC
Confidence 4666666554 4689999999999776554233433333332368999999998663
No 148
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=76.30 E-value=8.2 Score=36.08 Aligned_cols=60 Identities=15% Similarity=0.250 Sum_probs=39.8
Q ss_pred HHHHHHHH---hccceecCceeeeEEEcCCCceEEEEeC-CCCc-eEEecCEEEEcCCh-HHHHhcc
Q 014922 165 LPEAISKR---LGSKVKLSWKLSGVKKLDSGEYSLTYET-PEGL-VSLRSRSVVMTVPS-YVASSLL 225 (416)
Q Consensus 165 l~~~L~~~---lg~~I~l~~~V~~I~~~~~~~v~v~~~~-~~g~-~~~~ad~VI~a~p~-~~~~~ll 225 (416)
|-+.|.+. .+.+|+++++|++++.++++ +++++.. .+|+ ++++||.||-|--. ..+++.+
T Consensus 113 l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~-~~~~~~~~~~g~~~~i~adlvVgADG~~S~vR~~l 178 (356)
T PF01494_consen 113 LDRALREEAEERGVDIRFGTRVVSIEQDDDG-VTVVVRDGEDGEEETIEADLVVGADGAHSKVRKQL 178 (356)
T ss_dssp HHHHHHHHHHHHTEEEEESEEEEEEEEETTE-EEEEEEETCTCEEEEEEESEEEE-SGTT-HHHHHT
T ss_pred HHHhhhhhhhhhhhhheeeeecccccccccc-cccccccccCCceeEEEEeeeecccCcccchhhhc
Confidence 44444444 35799999999999998886 6655432 2454 37899999998755 4455544
No 149
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=76.09 E-value=7 Score=38.57 Aligned_cols=51 Identities=16% Similarity=0.278 Sum_probs=37.2
Q ss_pred HHHHHHHHh---ccceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCChH
Q 014922 165 LPEAISKRL---GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSY 219 (416)
Q Consensus 165 l~~~L~~~l---g~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~~ 219 (416)
+.+.|.+.+ |.+|++++.|++|+.++++ +.+++ .+|. ++++|.||+++...
T Consensus 218 ~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~-~~v~~--~~g~-~i~~D~vi~a~G~~ 271 (461)
T PRK05249 218 ISDALSYHLRDSGVTIRHNEEVEKVEGGDDG-VIVHL--KSGK-KIKADCLLYANGRT 271 (461)
T ss_pred HHHHHHHHHHHcCCEEEECCEEEEEEEeCCe-EEEEE--CCCC-EEEeCEEEEeecCC
Confidence 344444444 5689999999999877665 77764 4564 79999999998653
No 150
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=75.92 E-value=8.3 Score=39.03 Aligned_cols=56 Identities=13% Similarity=0.112 Sum_probs=37.4
Q ss_pred HHHHHHHH---hccceecCceeeeEEEcCCCceEEEEe-CCCCc-eEEecCEEEEcCChHH
Q 014922 165 LPEAISKR---LGSKVKLSWKLSGVKKLDSGEYSLTYE-TPEGL-VSLRSRSVVMTVPSYV 220 (416)
Q Consensus 165 l~~~L~~~---lg~~I~l~~~V~~I~~~~~~~v~v~~~-~~~g~-~~~~ad~VI~a~p~~~ 220 (416)
+..++++. .|++|+.+++|++|..++++.+.|++. +.+|+ .+++||.||.|+.+..
T Consensus 151 l~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa 211 (546)
T PRK11101 151 LTAANMLDAKEHGAQILTYHEVTGLIREGDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWG 211 (546)
T ss_pred HHHHHHHHHHhCCCEEEeccEEEEEEEcCCeEEEEEEEEcCCCcEEEEECCEEEECCChhH
Confidence 44454443 367999999999999876652234432 12221 3789999999998753
No 151
>PRK08013 oxidoreductase; Provisional
Probab=75.64 E-value=6 Score=38.20 Aligned_cols=48 Identities=19% Similarity=0.019 Sum_probs=36.7
Q ss_pred ccceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCCh-HHHHhcc
Q 014922 174 GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPS-YVASSLL 225 (416)
Q Consensus 174 g~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~-~~~~~ll 225 (416)
+.+|+++++|++|+.++++ ++|++ .+|. +++||.||-|--. ..+++.+
T Consensus 126 ~v~i~~~~~v~~i~~~~~~-v~v~~--~~g~-~i~a~lvVgADG~~S~vR~~~ 174 (400)
T PRK08013 126 DITLLAPAELQQVAWGENE-AFLTL--KDGS-MLTARLVVGADGANSWLRNKA 174 (400)
T ss_pred CcEEEcCCeeEEEEecCCe-EEEEE--cCCC-EEEeeEEEEeCCCCcHHHHHc
Confidence 3589999999999988876 88875 4564 8999999988764 4445543
No 152
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=75.01 E-value=9.5 Score=36.67 Aligned_cols=52 Identities=13% Similarity=0.081 Sum_probs=36.5
Q ss_pred hccceecCceeeeEEE-cCCCceEEEEeCCCCc-eEEecCEEEEcCCh-HHHHhccC
Q 014922 173 LGSKVKLSWKLSGVKK-LDSGEYSLTYETPEGL-VSLRSRSVVMTVPS-YVASSLLR 226 (416)
Q Consensus 173 lg~~I~l~~~V~~I~~-~~~~~v~v~~~~~~g~-~~~~ad~VI~a~p~-~~~~~ll~ 226 (416)
.+.+|+++++|++|+. ++++ +.|++. .+|+ ++++||.||-|--. ..+++.+.
T Consensus 116 ~gv~v~~~~~v~~i~~~~~~~-~~V~~~-~~G~~~~i~ad~vVgADG~~S~vR~~~~ 170 (392)
T PRK08243 116 AGGPIRFEASDVALHDFDSDR-PYVTYE-KDGEEHRLDCDFIAGCDGFHGVSRASIP 170 (392)
T ss_pred CCCeEEEeeeEEEEEecCCCc-eEEEEE-cCCeEEEEEeCEEEECCCCCCchhhhcC
Confidence 3678999999999987 4554 777763 3453 47899999988655 44555543
No 153
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=75.00 E-value=7.4 Score=38.77 Aligned_cols=56 Identities=7% Similarity=-0.054 Sum_probs=38.1
Q ss_pred HHHHHHHHHh----ccceecCceeeeEEEcCCCceE-EEEeCCCCceEEecCEEEEcCChHH
Q 014922 164 MLPEAISKRL----GSKVKLSWKLSGVKKLDSGEYS-LTYETPEGLVSLRSRSVVMTVPSYV 220 (416)
Q Consensus 164 ~l~~~L~~~l----g~~I~l~~~V~~I~~~~~~~v~-v~~~~~~g~~~~~ad~VI~a~p~~~ 220 (416)
.+.+.|.+.+ +.+|+.++.|++|..++++ +. |...+.++...+.++.||+|+-...
T Consensus 129 ~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~g~-v~Gv~~~~~~~~~~i~A~~VVlAtGG~~ 189 (488)
T TIGR00551 129 EVITTLVKKALNHPNIRIIEGENALDLLIETGR-VVGVWVWNRETVETCHADAVVLATGGAG 189 (488)
T ss_pred HHHHHHHHHHHhcCCcEEEECeEeeeeeccCCE-EEEEEEEECCcEEEEEcCEEEECCCccc
Confidence 4556666544 4589999999999876654 43 4433333324689999999997743
No 154
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=74.98 E-value=8.5 Score=37.95 Aligned_cols=42 Identities=24% Similarity=0.272 Sum_probs=32.4
Q ss_pred ccceecCceeeeEEEcCCCceEEEEeCCCCc-eEEecCEEEEcCCh
Q 014922 174 GSKVKLSWKLSGVKKLDSGEYSLTYETPEGL-VSLRSRSVVMTVPS 218 (416)
Q Consensus 174 g~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~-~~~~ad~VI~a~p~ 218 (416)
|.+|++++.|++|+.++++ +.+.. .+|. +++.+|.||+++..
T Consensus 225 gi~i~~~~~v~~i~~~~~~-v~v~~--~~g~~~~i~~D~vi~a~G~ 267 (461)
T TIGR01350 225 GVKILTNTKVTAVEKNDDQ-VVYEN--KGGETETLTGEKVLVAVGR 267 (461)
T ss_pred CCEEEeCCEEEEEEEeCCE-EEEEE--eCCcEEEEEeCEEEEecCC
Confidence 5689999999999887665 76653 3442 37899999999865
No 155
>PRK12839 hypothetical protein; Provisional
Probab=74.93 E-value=11 Score=38.42 Aligned_cols=55 Identities=16% Similarity=0.298 Sum_probs=35.6
Q ss_pred HHHHHHHHHh---ccceecCceeeeEEEcC-CCceEEEEeCCCCceEE-ecCEEEEcCCh
Q 014922 164 MLPEAISKRL---GSKVKLSWKLSGVKKLD-SGEYSLTYETPEGLVSL-RSRSVVMTVPS 218 (416)
Q Consensus 164 ~l~~~L~~~l---g~~I~l~~~V~~I~~~~-~~~v~v~~~~~~g~~~~-~ad~VI~a~p~ 218 (416)
.|+..|.+.. +.+|+++++|++|..++ ++.+.|.+...+|...+ .++.||+|+-.
T Consensus 215 ~l~~~L~~~a~~~Gv~i~~~t~v~~Li~~~~g~V~GV~~~~~~g~~~i~aak~VVLAtGG 274 (572)
T PRK12839 215 ALTGRLLRSADDLGVDLRVSTSATSLTTDKNGRVTGVRVQGPDGAVTVEATRGVVLATGG 274 (572)
T ss_pred HHHHHHHHHHHHCCCEEEcCCEEEEEEECCCCcEEEEEEEeCCCcEEEEeCCEEEEcCCC
Confidence 3555555543 67999999999998754 44233544445564334 44899999854
No 156
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=74.60 E-value=11 Score=37.74 Aligned_cols=47 Identities=13% Similarity=0.249 Sum_probs=35.1
Q ss_pred hccceecCceeeeEEEcCCCceEEEEeCCCCc-eEEecCEEEEcCChHH
Q 014922 173 LGSKVKLSWKLSGVKKLDSGEYSLTYETPEGL-VSLRSRSVVMTVPSYV 220 (416)
Q Consensus 173 lg~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~-~~~~ad~VI~a~p~~~ 220 (416)
.|++|+.+++|++|..+++. +.|+.....|+ .++.|+.||.|+.+..
T Consensus 168 ~Ga~i~~~~~V~~i~~~~~~-~~v~~~~~~g~~~~i~a~~VVnAaG~wa 215 (502)
T PRK13369 168 RGATILTRTRCVSARREGGL-WRVETRDADGETRTVRARALVNAAGPWV 215 (502)
T ss_pred CCCEEecCcEEEEEEEcCCE-EEEEEEeCCCCEEEEEecEEEECCCccH
Confidence 47899999999999987664 77764322232 3689999999998743
No 157
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=73.92 E-value=8.7 Score=37.75 Aligned_cols=41 Identities=20% Similarity=0.358 Sum_probs=32.8
Q ss_pred ccceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCCh
Q 014922 174 GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPS 218 (416)
Q Consensus 174 g~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~ 218 (416)
+.++++++.|++|+.++++ +.|++ .+|. ++++|.||+++..
T Consensus 221 gV~i~~~~~v~~i~~~~~~-~~v~~--~~g~-~i~~D~viva~G~ 261 (446)
T TIGR01424 221 GIRIHPQTSLTSITKTDDG-LKVTL--SHGE-EIVADVVLFATGR 261 (446)
T ss_pred CCEEEeCCEEEEEEEcCCe-EEEEE--cCCc-EeecCEEEEeeCC
Confidence 5699999999999887665 66654 3564 7999999999765
No 158
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=73.79 E-value=8.7 Score=38.01 Aligned_cols=42 Identities=21% Similarity=0.303 Sum_probs=33.0
Q ss_pred hccceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCCh
Q 014922 173 LGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPS 218 (416)
Q Consensus 173 lg~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~ 218 (416)
.|.+|++++.|++|+.++++ +.|.+ .+|. ++++|.||+++..
T Consensus 231 ~gV~i~~~~~v~~v~~~~~~-~~v~~--~~g~-~l~~D~vl~a~G~ 272 (466)
T PRK07845 231 RGMTVLKRSRAESVERTGDG-VVVTL--TDGR-TVEGSHALMAVGS 272 (466)
T ss_pred CCcEEEcCCEEEEEEEeCCE-EEEEE--CCCc-EEEecEEEEeecC
Confidence 35689999999999877665 77764 3564 7999999999654
No 159
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=73.26 E-value=13 Score=35.22 Aligned_cols=59 Identities=19% Similarity=0.295 Sum_probs=40.2
Q ss_pred hhhHhH-HHHHHHHHh---ccceecCceeeeEEEcCCCceEEEEeC-CCCc-eEEecCEEEEcCC
Q 014922 159 RKGLTM-LPEAISKRL---GSKVKLSWKLSGVKKLDSGEYSLTYET-PEGL-VSLRSRSVVMTVP 217 (416)
Q Consensus 159 ~gG~~~-l~~~L~~~l---g~~I~l~~~V~~I~~~~~~~v~v~~~~-~~g~-~~~~ad~VI~a~p 217 (416)
-++|.. +.+++.+.| |-+++|+++|+.++...+|.+.|++.. .+|+ ++++||.+.+++-
T Consensus 247 ~~~mD~Eisk~~qr~L~kQgikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiG 311 (506)
T KOG1335|consen 247 GGVMDGEISKAFQRVLQKQGIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIG 311 (506)
T ss_pred ccccCHHHHHHHHHHHHhcCceeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEEcc
Confidence 344443 444444444 348999999999999988657777643 2332 5899999888863
No 160
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=72.75 E-value=4.6 Score=38.51 Aligned_cols=35 Identities=23% Similarity=0.498 Sum_probs=27.5
Q ss_pred CCCCEEEeeccC------CCCchhHHHHHHHHHHHHHHHHh
Q 014922 376 GYQGLFLGGNYV------AGVALGRCVESAYEVASEVSNFL 410 (416)
Q Consensus 376 ~~~~l~~aG~~~------~g~~~~~ai~sg~~aA~~il~~l 410 (416)
.+|+|||||+-+ .|..+.-|..||+.|++.+.+.+
T Consensus 335 ~~pgLYf~GEvLDvdG~~GGYNLq~AwsSG~~AG~~~~~~~ 375 (376)
T TIGR03862 335 ARPGVFCAGEMLDWEAPTGGYLLTACFATGRAAGRGVHSWL 375 (376)
T ss_pred cCCCeEEEEEEEeeccCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 579999999533 34455669999999999988765
No 161
>PRK14727 putative mercuric reductase; Provisional
Probab=72.64 E-value=9.7 Score=37.82 Aligned_cols=50 Identities=28% Similarity=0.375 Sum_probs=36.0
Q ss_pred HHHHHHHHh---ccceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCChH
Q 014922 165 LPEAISKRL---GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSY 219 (416)
Q Consensus 165 l~~~L~~~l---g~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~~ 219 (416)
+.+.+.+.+ |.+|+++++|++|+.++++ +.|. +.++ ++.+|.||+++...
T Consensus 230 ~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~~-~~v~--~~~g--~i~aD~VlvA~G~~ 282 (479)
T PRK14727 230 LGETLTACFEKEGIEVLNNTQASLVEHDDNG-FVLT--TGHG--ELRAEKLLISTGRH 282 (479)
T ss_pred HHHHHHHHHHhCCCEEEcCcEEEEEEEeCCE-EEEE--EcCC--eEEeCEEEEccCCC
Confidence 344444444 5689999999999876665 6665 3455 68899999998764
No 162
>PRK07538 hypothetical protein; Provisional
Probab=72.47 E-value=11 Score=36.61 Aligned_cols=60 Identities=22% Similarity=0.278 Sum_probs=39.9
Q ss_pred HHHHHHHHhcc-ceecCceeeeEEEcCCCceEEEEeCC-CC-ceEEecCEEEEcCCh-HHHHhcc
Q 014922 165 LPEAISKRLGS-KVKLSWKLSGVKKLDSGEYSLTYETP-EG-LVSLRSRSVVMTVPS-YVASSLL 225 (416)
Q Consensus 165 l~~~L~~~lg~-~I~l~~~V~~I~~~~~~~v~v~~~~~-~g-~~~~~ad~VI~a~p~-~~~~~ll 225 (416)
|.+++.+.++. .|+++++|++++.++++ +.+.+... +| .++++||.||-|--. ..+++.+
T Consensus 108 L~~~~~~~~g~~~i~~~~~v~~~~~~~~~-~~~~~~~~~~g~~~~~~adlvIgADG~~S~vR~~l 171 (413)
T PRK07538 108 LLDAVRERLGPDAVRTGHRVVGFEQDADV-TVVFLGDRAGGDLVSVRGDVLIGADGIHSAVRAQL 171 (413)
T ss_pred HHHHHHhhcCCcEEEcCCEEEEEEecCCc-eEEEEeccCCCccceEEeeEEEECCCCCHHHhhhh
Confidence 44444454553 69999999999988776 66654321 22 247899999988755 4455554
No 163
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=72.47 E-value=8.7 Score=37.63 Aligned_cols=50 Identities=6% Similarity=0.004 Sum_probs=34.1
Q ss_pred HHHHHhccceecCceeeeEEEcCCCceEEEEeCCCCc-eEEecCEEEEcCChH
Q 014922 168 AISKRLGSKVKLSWKLSGVKKLDSGEYSLTYETPEGL-VSLRSRSVVMTVPSY 219 (416)
Q Consensus 168 ~L~~~lg~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~-~~~~ad~VI~a~p~~ 219 (416)
.+.+..+.+++++++|++|+.+++. |.+.- ..++. .++.||++|+|+-..
T Consensus 66 ~~~~~~~i~v~~~~~V~~Id~~~~~-v~~~~-~~~~~~~~~~yd~lviAtGs~ 116 (438)
T PRK13512 66 KFYDRKQITVKTYHEVIAINDERQT-VTVLN-RKTNEQFEESYDKLILSPGAS 116 (438)
T ss_pred HHHHhCCCEEEeCCEEEEEECCCCE-EEEEE-CCCCcEEeeecCEEEECCCCC
Confidence 4444456689999999999988764 66642 11222 246899999998653
No 164
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=71.94 E-value=9.4 Score=37.41 Aligned_cols=49 Identities=10% Similarity=0.251 Sum_probs=34.9
Q ss_pred HHHHHHHHh---ccceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCCh
Q 014922 165 LPEAISKRL---GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPS 218 (416)
Q Consensus 165 l~~~L~~~l---g~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~ 218 (416)
+.+.+.+.+ |.++++++.|++|+.++++ +.+. +.+| ++.+|.||+++..
T Consensus 201 ~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~-v~v~--~~~g--~i~~D~vl~a~G~ 252 (441)
T PRK08010 201 IADNIATILRDQGVDIILNAHVERISHHENQ-VQVH--SEHA--QLAVDALLIASGR 252 (441)
T ss_pred HHHHHHHHHHhCCCEEEeCCEEEEEEEcCCE-EEEE--EcCC--eEEeCEEEEeecC
Confidence 344444444 5689999999999987654 6664 3455 5889999999643
No 165
>PRK11445 putative oxidoreductase; Provisional
Probab=71.62 E-value=15 Score=34.73 Aligned_cols=50 Identities=16% Similarity=0.221 Sum_probs=36.8
Q ss_pred ccceecCceeeeEEEcCCCceEEEEeCCCCc-eEEecCEEEEcCChH-HHHhcc
Q 014922 174 GSKVKLSWKLSGVKKLDSGEYSLTYETPEGL-VSLRSRSVVMTVPSY-VASSLL 225 (416)
Q Consensus 174 g~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~-~~~~ad~VI~a~p~~-~~~~ll 225 (416)
+.++++++.|++|+.++++ +.|++. .+|. .+++||.||.|.-.. .+++.+
T Consensus 112 gv~v~~~~~v~~i~~~~~~-~~v~~~-~~g~~~~i~a~~vV~AdG~~S~vr~~l 163 (351)
T PRK11445 112 SVEVYHNSLCRKIWREDDG-YHVIFR-ADGWEQHITARYLVGADGANSMVRRHL 163 (351)
T ss_pred CCEEEcCCEEEEEEEcCCE-EEEEEe-cCCcEEEEEeCEEEECCCCCcHHhHHh
Confidence 5689999999999988776 888753 3453 368999999998663 344443
No 166
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=71.54 E-value=6.3 Score=36.14 Aligned_cols=52 Identities=10% Similarity=0.118 Sum_probs=36.4
Q ss_pred ccceecCceeeeEEEc--CCCceEEEEeCCCCc---eEEecCEEEEcCChHHHHhcc
Q 014922 174 GSKVKLSWKLSGVKKL--DSGEYSLTYETPEGL---VSLRSRSVVMTVPSYVASSLL 225 (416)
Q Consensus 174 g~~I~l~~~V~~I~~~--~~~~v~v~~~~~~g~---~~~~ad~VI~a~p~~~~~~ll 225 (416)
+.+|++++.|++|..+ +++...|.+...++. ..+.++.||++.-.-...+||
T Consensus 207 n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai~Tp~LL 263 (296)
T PF00732_consen 207 NLTLLTNARVTRIIFDGDGGRATGVEYVDNDGGVQRRIVAAKEVILAAGAIGTPRLL 263 (296)
T ss_dssp TEEEEESEEEEEEEEETTSTEEEEEEEEETTTSEEEEEEEEEEEEE-SHHHHHHHHH
T ss_pred CccEEcCcEEEEEeeeccccceeeeeeeecCCcceeeeccceeEEeccCCCCChhhh
Confidence 3589999999999664 343344666555554 467789999999886666663
No 167
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=71.46 E-value=12 Score=37.63 Aligned_cols=52 Identities=13% Similarity=0.197 Sum_probs=39.0
Q ss_pred HHHHHHHHHh---ccceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCChH
Q 014922 164 MLPEAISKRL---GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSY 219 (416)
Q Consensus 164 ~l~~~L~~~l---g~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~~ 219 (416)
.+.+.+.+.+ +.+++++++|++|+.+++. +.|++ .+|. .+.||+||+|+...
T Consensus 268 ~l~~~l~~~l~~~gv~i~~~~~V~~I~~~~~~-~~v~~--~~g~-~i~~d~lIlAtGa~ 322 (515)
T TIGR03140 268 QLAANLEEHIKQYPIDLMENQRAKKIETEDGL-IVVTL--ESGE-VLKAKSVIVATGAR 322 (515)
T ss_pred HHHHHHHHHHHHhCCeEEcCCEEEEEEecCCe-EEEEE--CCCC-EEEeCEEEECCCCC
Confidence 4555555544 5689999999999887665 77764 4564 79999999999764
No 168
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=71.23 E-value=11 Score=36.24 Aligned_cols=43 Identities=19% Similarity=0.255 Sum_probs=32.3
Q ss_pred HhccceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCChH
Q 014922 172 RLGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSY 219 (416)
Q Consensus 172 ~lg~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~~ 219 (416)
..|.+|++++.|++|+. ++. +.|++ .+|+ ++.||.||+++...
T Consensus 198 ~~GV~i~~~~~V~~i~~-~~~-~~v~l--~~g~-~i~aD~Vv~a~G~~ 240 (396)
T PRK09754 198 QAGVRILLNNAIEHVVD-GEK-VELTL--QSGE-TLQADVVIYGIGIS 240 (396)
T ss_pred HCCCEEEeCCeeEEEEc-CCE-EEEEE--CCCC-EEECCEEEECCCCC
Confidence 34679999999999986 333 56653 4664 79999999998653
No 169
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=70.65 E-value=11 Score=36.96 Aligned_cols=43 Identities=16% Similarity=0.105 Sum_probs=31.7
Q ss_pred HHhccceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCCh
Q 014922 171 KRLGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPS 218 (416)
Q Consensus 171 ~~lg~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~ 218 (416)
+..|.+++++++|++|+.++++ +.++ + +|. ++.+|.||+++..
T Consensus 209 ~~~GI~i~~~~~V~~i~~~~~~-v~v~--~-~g~-~i~~D~viva~G~ 251 (438)
T PRK07251 209 EEDGITFLLNAHTTEVKNDGDQ-VLVV--T-EDE-TYRFDALLYATGR 251 (438)
T ss_pred HHcCCEEEcCCEEEEEEecCCE-EEEE--E-CCe-EEEcCEEEEeeCC
Confidence 3346799999999999876554 6554 2 453 7999999998644
No 170
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=70.25 E-value=5.7 Score=35.76 Aligned_cols=37 Identities=32% Similarity=0.469 Sum_probs=28.4
Q ss_pred CCCCEEEee---ccCC-----CCchhHHHHHHHHHHHHHHHHhhh
Q 014922 376 GYQGLFLGG---NYVA-----GVALGRCVESAYEVASEVSNFLSQ 412 (416)
Q Consensus 376 ~~~~l~~aG---~~~~-----g~~~~~ai~sg~~aA~~il~~l~~ 412 (416)
-+|+||++| +.++ |+-.++-+.||++||+.|++.|+.
T Consensus 212 ~~~g~~~~gm~~~~~~~~~rmg~~fg~m~~sg~~~a~~~~~~~~~ 256 (257)
T PRK04176 212 VYPGLYVAGMAANAVHGLPRMGPIFGGMLLSGKKVAELILEKLKK 256 (257)
T ss_pred EcCCEEEeehhhhhhcCCCccCchhHhHHHhHHHHHHHHHHHhhc
Confidence 368999999 2333 334566889999999999999865
No 171
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=69.25 E-value=1.5 Score=42.76 Aligned_cols=63 Identities=14% Similarity=0.148 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHhccceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCChHHHHhc
Q 014922 162 LTMLPEAISKRLGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYVASSL 224 (416)
Q Consensus 162 ~~~l~~~L~~~lg~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~~~~~~l 224 (416)
+..+.+.+.+..|.+|++++.|.++..++++.+.|++.+.+|..++.|+.||=|+--..+..+
T Consensus 92 ~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g~~~i~A~~~IDaTG~g~l~~~ 154 (428)
T PF12831_consen 92 FKAVLDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETKSGRKEIRAKVFIDATGDGDLAAL 154 (428)
T ss_dssp ---------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 444555666666789999999999999876634465545556678999999988876556555
No 172
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=69.21 E-value=10 Score=36.98 Aligned_cols=48 Identities=10% Similarity=0.113 Sum_probs=33.5
Q ss_pred HHHHHhccceecCceeeeEEEcCCCceEEEEeCCCCceEEe--cCEEEEcCCh
Q 014922 168 AISKRLGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLR--SRSVVMTVPS 218 (416)
Q Consensus 168 ~L~~~lg~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~--ad~VI~a~p~ 218 (416)
.+.+..+.++++++.|++|+.+++. +.+.- ..++ .++. ||+||+|+-.
T Consensus 52 ~~~~~~gv~~~~~~~V~~id~~~~~-v~~~~-~~~~-~~~~~~yd~lIiATG~ 101 (427)
T TIGR03385 52 VFIKKRGIDVKTNHEVIEVNDERQT-VVVRN-NKTN-ETYEESYDYLILSPGA 101 (427)
T ss_pred HHHHhcCCeEEecCEEEEEECCCCE-EEEEE-CCCC-CEEecCCCEEEECCCC
Confidence 3444456688899999999976654 66641 1223 2667 9999999875
No 173
>PRK14694 putative mercuric reductase; Provisional
Probab=69.12 E-value=13 Score=36.81 Aligned_cols=49 Identities=24% Similarity=0.302 Sum_probs=34.7
Q ss_pred HHHHHHHHh---ccceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCCh
Q 014922 165 LPEAISKRL---GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPS 218 (416)
Q Consensus 165 l~~~L~~~l---g~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~ 218 (416)
+.+.+.+.+ |.+|++++.|++|+.+++. +.+. +.++ ++++|.||+++..
T Consensus 220 ~~~~l~~~l~~~GI~v~~~~~v~~i~~~~~~-~~v~--~~~~--~i~~D~vi~a~G~ 271 (468)
T PRK14694 220 VGEAIEAAFRREGIEVLKQTQASEVDYNGRE-FILE--TNAG--TLRAEQLLVATGR 271 (468)
T ss_pred HHHHHHHHHHhCCCEEEeCCEEEEEEEcCCE-EEEE--ECCC--EEEeCEEEEccCC
Confidence 444444443 5689999999999876553 5554 3444 6999999999754
No 174
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=69.11 E-value=17 Score=35.78 Aligned_cols=53 Identities=17% Similarity=0.227 Sum_probs=35.9
Q ss_pred HHHHHHHHh---ccceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCChH
Q 014922 165 LPEAISKRL---GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSY 219 (416)
Q Consensus 165 l~~~L~~~l---g~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~~ 219 (416)
+.+.+.+.+ |.++++++.|++|+.+.++.+.|.+ .+|...+++|.||+++...
T Consensus 209 ~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~~~~~v~~--~~g~~~i~~D~vi~a~G~~ 264 (450)
T TIGR01421 209 ISETITEEYEKEGINVHKLSKPVKVEKTVEGKLVIHF--EDGKSIDDVDELIWAIGRK 264 (450)
T ss_pred HHHHHHHHHHHcCCEEEcCCEEEEEEEeCCceEEEEE--CCCcEEEEcCEEEEeeCCC
Confidence 334444444 5689999999999875443255654 3453478999999998653
No 175
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=69.07 E-value=9.8 Score=38.62 Aligned_cols=62 Identities=23% Similarity=0.289 Sum_probs=45.9
Q ss_pred eeehhhh-H--hHHHHHHHHH---hccceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCChHH
Q 014922 155 VGSFRKG-L--TMLPEAISKR---LGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYV 220 (416)
Q Consensus 155 ~~~~~gG-~--~~l~~~L~~~---lg~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~~~ 220 (416)
+|.+..| | ..+..+|+.. +|..|.-+|+|++|....++.+.|. |..| .+++.+||-|+-.+.
T Consensus 176 Ly~P~DG~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~~~~gVe--T~~G--~iet~~~VNaaGvWA 243 (856)
T KOG2844|consen 176 LYSPGDGVMDPAGLCQALARAASALGALVIENCPVTGLHVETDKFGGVE--TPHG--SIETECVVNAAGVWA 243 (856)
T ss_pred eecCCCcccCHHHHHHHHHHHHHhcCcEEEecCCcceEEeecCCcccee--ccCc--ceecceEEechhHHH
Confidence 3444444 2 3466666654 5789999999999998777646664 7788 689999999988865
No 176
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=68.60 E-value=16 Score=36.37 Aligned_cols=44 Identities=14% Similarity=0.252 Sum_probs=31.8
Q ss_pred ccceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCCh
Q 014922 174 GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPS 218 (416)
Q Consensus 174 g~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~ 218 (416)
|.+|++++.|++|+..+++ +.|++...++..++++|.||+++..
T Consensus 234 gV~i~~~~~v~~v~~~~~~-~~v~~~~~~~~~~i~~D~vl~a~G~ 277 (484)
T TIGR01438 234 GVKFKRQFVPIKVEQIEAK-VKVTFTDSTNGIEEEYDTVLLAIGR 277 (484)
T ss_pred CCEEEeCceEEEEEEcCCe-EEEEEecCCcceEEEeCEEEEEecC
Confidence 5689999999999876654 6666532211237899999999865
No 177
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=68.17 E-value=17 Score=36.97 Aligned_cols=56 Identities=11% Similarity=0.089 Sum_probs=38.3
Q ss_pred HHHHHHHHHh---ccceecCceeeeEEEcCCCceEEEE-eCCCCc-eEEecCEEEEcCChH
Q 014922 164 MLPEAISKRL---GSKVKLSWKLSGVKKLDSGEYSLTY-ETPEGL-VSLRSRSVVMTVPSY 219 (416)
Q Consensus 164 ~l~~~L~~~l---g~~I~l~~~V~~I~~~~~~~v~v~~-~~~~g~-~~~~ad~VI~a~p~~ 219 (416)
.+.++|.+.+ +.+|..+++|+++..++++++.|.. ...+|. ..+.|++||+|+-.-
T Consensus 120 ~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~g~v~Ga~~~~~~~g~~~~i~AkaVILATGG~ 180 (565)
T TIGR01816 120 AILHTLYQQNLKADTSFFNEYFALDLLMEDGECRGVIAYCLETGEIHRFRAKAVVLATGGY 180 (565)
T ss_pred HHHHHHHHHHHhCCCEEEeccEEEEEEeeCCEEEEEEEEEcCCCcEEEEEeCeEEECCCCc
Confidence 4666666654 5689999999999876554333332 223454 467899999998663
No 178
>PRK07846 mycothione reductase; Reviewed
Probab=68.14 E-value=14 Score=36.47 Aligned_cols=42 Identities=19% Similarity=0.321 Sum_probs=32.7
Q ss_pred ccceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCChH
Q 014922 174 GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSY 219 (416)
Q Consensus 174 g~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~~ 219 (416)
+.+++++++|++|+.++++ +.|++ .+|. ++++|.||+++...
T Consensus 220 ~v~i~~~~~v~~i~~~~~~-v~v~~--~~g~-~i~~D~vl~a~G~~ 261 (451)
T PRK07846 220 RWDVRLGRNVVGVSQDGSG-VTLRL--DDGS-TVEADVLLVATGRV 261 (451)
T ss_pred CeEEEeCCEEEEEEEcCCE-EEEEE--CCCc-EeecCEEEEEECCc
Confidence 4589999999999877655 66664 4564 79999999998653
No 179
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=67.88 E-value=17 Score=39.02 Aligned_cols=53 Identities=11% Similarity=0.130 Sum_probs=36.7
Q ss_pred hHHHHHHHHHhccceecCceeeeEEEcCC-CceEEEEeCCCCceEEecCEEEEcCCh
Q 014922 163 TMLPEAISKRLGSKVKLSWKLSGVKKLDS-GEYSLTYETPEGLVSLRSRSVVMTVPS 218 (416)
Q Consensus 163 ~~l~~~L~~~lg~~I~l~~~V~~I~~~~~-~~v~v~~~~~~g~~~~~ad~VI~a~p~ 218 (416)
..+.....+..|.+|++++.|++|..++. ....|.+ .+|+ ++.+|.||+++..
T Consensus 190 ~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~--~dG~-~i~~D~Vv~A~G~ 243 (847)
T PRK14989 190 GEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRF--ADGS-ELEVDFIVFSTGI 243 (847)
T ss_pred HHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEE--CCCC-EEEcCEEEECCCc
Confidence 33444444556789999999999986432 2134543 5675 8999999999865
No 180
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=67.55 E-value=18 Score=35.77 Aligned_cols=54 Identities=30% Similarity=0.406 Sum_probs=36.8
Q ss_pred HHHHHHHHh---ccceecCceeeeEEEcCCCceEEEEeC-CCC-ceEEecCEEEEcCChH
Q 014922 165 LPEAISKRL---GSKVKLSWKLSGVKKLDSGEYSLTYET-PEG-LVSLRSRSVVMTVPSY 219 (416)
Q Consensus 165 l~~~L~~~l---g~~I~l~~~V~~I~~~~~~~v~v~~~~-~~g-~~~~~ad~VI~a~p~~ 219 (416)
+.+.+.+.+ |.+|++++.|++|+.++++ +.+++.. .+| .+++++|.||+++...
T Consensus 217 ~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~-v~v~~~~~~~g~~~~i~~D~vi~a~G~~ 275 (466)
T PRK06115 217 TAKTLQKALTKQGMKFKLGSKVTGATAGADG-VSLTLEPAAGGAAETLQADYVLVAIGRR 275 (466)
T ss_pred HHHHHHHHHHhcCCEEEECcEEEEEEEcCCe-EEEEEEEcCCCceeEEEeCEEEEccCCc
Confidence 444444444 5689999999999876665 6665432 122 2478999999998653
No 181
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=67.42 E-value=16 Score=36.29 Aligned_cols=44 Identities=20% Similarity=0.241 Sum_probs=32.7
Q ss_pred cceecCceeeeEEEcCCCceEEEEeCCCC-ceEEecCEEEEcCChH
Q 014922 175 SKVKLSWKLSGVKKLDSGEYSLTYETPEG-LVSLRSRSVVMTVPSY 219 (416)
Q Consensus 175 ~~I~l~~~V~~I~~~~~~~v~v~~~~~~g-~~~~~ad~VI~a~p~~ 219 (416)
.+|++++.|++|+..+++ +.|++...+| .+++++|.||+++...
T Consensus 229 v~i~~~~~v~~i~~~~~~-~~v~~~~~~~~~~~i~~D~vi~a~G~~ 273 (471)
T PRK06467 229 FNIMLETKVTAVEAKEDG-IYVTMEGKKAPAEPQRYDAVLVAVGRV 273 (471)
T ss_pred eEEEcCCEEEEEEEcCCE-EEEEEEeCCCcceEEEeCEEEEeeccc
Confidence 589999999999877665 7776533223 2468999999998663
No 182
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=67.08 E-value=16 Score=36.62 Aligned_cols=52 Identities=12% Similarity=0.202 Sum_probs=39.2
Q ss_pred HHHHHHHHHh---ccceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCChH
Q 014922 164 MLPEAISKRL---GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSY 219 (416)
Q Consensus 164 ~l~~~L~~~l---g~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~~ 219 (416)
.+.+.|.+.+ +.+++++++|.+|+..++. +.|.. .+|. .+.||.||+|+-..
T Consensus 267 ~l~~~l~~~~~~~gv~i~~~~~V~~I~~~~~~-~~V~~--~~g~-~i~a~~vViAtG~~ 321 (517)
T PRK15317 267 KLAAALEEHVKEYDVDIMNLQRASKLEPAAGL-IEVEL--ANGA-VLKAKTVILATGAR 321 (517)
T ss_pred HHHHHHHHHHHHCCCEEEcCCEEEEEEecCCe-EEEEE--CCCC-EEEcCEEEECCCCC
Confidence 4555555544 5689999999999987665 77764 4564 78999999999873
No 183
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=67.07 E-value=18 Score=37.52 Aligned_cols=56 Identities=11% Similarity=0.093 Sum_probs=38.2
Q ss_pred HHHHHHHHHh---ccceecCceeeeEEEcCCCceEEEEe-CCCCc-eEEecCEEEEcCChH
Q 014922 164 MLPEAISKRL---GSKVKLSWKLSGVKKLDSGEYSLTYE-TPEGL-VSLRSRSVVMTVPSY 219 (416)
Q Consensus 164 ~l~~~L~~~l---g~~I~l~~~V~~I~~~~~~~v~v~~~-~~~g~-~~~~ad~VI~a~p~~ 219 (416)
.|...|.+.+ +.+|+.+++|++|..++++++.|.+. ..+|+ ..+.|+.||+|+-..
T Consensus 159 ~l~~~L~~~~~~~gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~G~~~~i~AkaVVLATGG~ 219 (657)
T PRK08626 159 TMLYAVDNEAIKLGVPVHDRKEAIALIHDGKRCYGAVVRCLITGELRAYVAKATLIATGGY 219 (657)
T ss_pred HHHHHHHHHHHhCCCEEEeeEEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCeEEECCCcc
Confidence 4555665543 57999999999999876543334332 24564 356899999999763
No 184
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=67.06 E-value=16 Score=35.99 Aligned_cols=51 Identities=14% Similarity=0.243 Sum_probs=34.1
Q ss_pred HHHHHHHHh---ccceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCCh
Q 014922 165 LPEAISKRL---GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPS 218 (416)
Q Consensus 165 l~~~L~~~l---g~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~ 218 (416)
+.+.+.+.+ |.+|++++.|++|+.+++. +.+. +.++..+++||.||+++..
T Consensus 213 ~~~~l~~~L~~~GI~i~~~~~V~~i~~~~~~-v~~~--~~g~~~~i~~D~vivA~G~ 266 (458)
T PRK06912 213 IAHILREKLENDGVKIFTGAALKGLNSYKKQ-ALFE--YEGSIQEVNAEFVLVSVGR 266 (458)
T ss_pred HHHHHHHHHHHCCCEEEECCEEEEEEEcCCE-EEEE--ECCceEEEEeCEEEEecCC
Confidence 344444433 5689999999999876543 5543 2222236899999999864
No 185
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=66.98 E-value=15 Score=37.20 Aligned_cols=56 Identities=5% Similarity=0.006 Sum_probs=38.2
Q ss_pred HHHHHHHHHh---ccceecCceeeeEEEcCCC-ceEEEEeC-CCCc-eEEecCEEEEcCChH
Q 014922 164 MLPEAISKRL---GSKVKLSWKLSGVKKLDSG-EYSLTYET-PEGL-VSLRSRSVVMTVPSY 219 (416)
Q Consensus 164 ~l~~~L~~~l---g~~I~l~~~V~~I~~~~~~-~v~v~~~~-~~g~-~~~~ad~VI~a~p~~ 219 (416)
.+.+.|.+.+ +.+|.++++|+++..++++ .+.|.... .+|. ..+.|+.||+|+-..
T Consensus 135 ~i~~~L~~~~~~~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~ 196 (543)
T PRK06263 135 EMMMGLMEYLIKERIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATGGA 196 (543)
T ss_pred HHHHHHHHHHhcCCCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCCC
Confidence 4666666554 5699999999999887654 33333222 3553 468999999998653
No 186
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=66.89 E-value=13 Score=35.75 Aligned_cols=50 Identities=24% Similarity=0.310 Sum_probs=36.0
Q ss_pred HhHHHHHHHHHhccceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCCh
Q 014922 162 LTMLPEAISKRLGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPS 218 (416)
Q Consensus 162 ~~~l~~~L~~~lg~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~ 218 (416)
....++...+.+|.+|+++++|++|+.+ + +++. +|++++.++.||=|+-.
T Consensus 211 l~~~a~~~L~~~GV~v~l~~~Vt~v~~~--~-v~~~----~g~~~I~~~tvvWaaGv 260 (405)
T COG1252 211 LSKYAERALEKLGVEVLLGTPVTEVTPD--G-VTLK----DGEEEIPADTVVWAAGV 260 (405)
T ss_pred HHHHHHHHHHHCCCEEEcCCceEEECCC--c-EEEc----cCCeeEecCEEEEcCCC
Confidence 4445566666678899999999999863 3 6553 44325999999988743
No 187
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=66.41 E-value=6.5 Score=37.33 Aligned_cols=35 Identities=17% Similarity=0.436 Sum_probs=26.8
Q ss_pred CCCCEEEeec------cCCCCchhHHHHHHHHHHHHHHHHh
Q 014922 376 GYQGLFLGGN------YVAGVALGRCVESAYEVASEVSNFL 410 (416)
Q Consensus 376 ~~~~l~~aG~------~~~g~~~~~ai~sg~~aA~~il~~l 410 (416)
.+|+|||||+ |+.|..+..|..||+.|++-+...+
T Consensus 367 ~vPGLyf~GEvlDv~g~tGGYN~q~A~asG~~Ag~~~~~~~ 407 (408)
T COG2081 367 KVPGLYFAGEVLDVTGWTGGYNFQWAWASGWAAGQGAAAWL 407 (408)
T ss_pred cCCCcEEEEEEEEeccCCCcHHHHHHHHHHHHHHHhhhhhc
Confidence 5799999994 3334455669999999999887653
No 188
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=66.31 E-value=18 Score=35.49 Aligned_cols=58 Identities=14% Similarity=0.188 Sum_probs=41.1
Q ss_pred HhHHHHHHHHHhc--cceecCceeeeEEEcC-CCceEEEEeCCCC-ceEEecCEEEEcCChHH
Q 014922 162 LTMLPEAISKRLG--SKVKLSWKLSGVKKLD-SGEYSLTYETPEG-LVSLRSRSVVMTVPSYV 220 (416)
Q Consensus 162 ~~~l~~~L~~~lg--~~I~l~~~V~~I~~~~-~~~v~v~~~~~~g-~~~~~ad~VI~a~p~~~ 220 (416)
+-...+..|+..+ ..|++++.|.+++... ++ |.|.+.+..+ .+...||.||+|+-...
T Consensus 92 ~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gk-W~V~~~~~~~~~~~~ifd~VvVctGh~~ 153 (448)
T KOG1399|consen 92 VLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGK-WRVTTKDNGTQIEEEIFDAVVVCTGHYV 153 (448)
T ss_pred HHHHHHHHHHhcChhhheEecccEEEEeeccCCc-eeEEEecCCcceeEEEeeEEEEcccCcC
Confidence 4444444455443 4799999999999987 55 9998754433 24778999999987763
No 189
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=66.29 E-value=17 Score=35.72 Aligned_cols=42 Identities=14% Similarity=0.302 Sum_probs=33.0
Q ss_pred ccceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCChH
Q 014922 174 GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSY 219 (416)
Q Consensus 174 g~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~~ 219 (416)
+.++++++.|++|+.++++ +.|++ .+|. ++++|.||+++...
T Consensus 223 gI~i~~~~~V~~i~~~~~~-v~v~~--~~g~-~i~~D~vl~a~G~~ 264 (452)
T TIGR03452 223 KWDIRLGRNVTAVEQDGDG-VTLTL--DDGS-TVTADVLLVATGRV 264 (452)
T ss_pred CCEEEeCCEEEEEEEcCCe-EEEEE--cCCC-EEEcCEEEEeeccC
Confidence 4589999999999987665 77764 4564 79999999998653
No 190
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=66.00 E-value=17 Score=36.10 Aligned_cols=51 Identities=22% Similarity=0.323 Sum_probs=35.5
Q ss_pred HHHHHHHHh---ccceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCCh
Q 014922 165 LPEAISKRL---GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPS 218 (416)
Q Consensus 165 l~~~L~~~l---g~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~ 218 (416)
+.+.+.+.+ |.+|++++.|++|+..+++...|++ .+|. ++++|.||+++-.
T Consensus 233 ~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~~~~v~~--~~g~-~i~~D~vl~a~G~ 286 (486)
T TIGR01423 233 LRKELTKQLRANGINIMTNENPAKVTLNADGSKHVTF--ESGK-TLDVDVVMMAIGR 286 (486)
T ss_pred HHHHHHHHHHHcCCEEEcCCEEEEEEEcCCceEEEEE--cCCC-EEEcCEEEEeeCC
Confidence 444444444 5689999999999876554245554 3554 7999999998753
No 191
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=65.83 E-value=14 Score=35.21 Aligned_cols=58 Identities=3% Similarity=0.029 Sum_probs=41.1
Q ss_pred hHHHHHHHHHh---c-cceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCCh-HHHHhcc
Q 014922 163 TMLPEAISKRL---G-SKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPS-YVASSLL 225 (416)
Q Consensus 163 ~~l~~~L~~~l---g-~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~-~~~~~ll 225 (416)
..|-+.|.+.+ + .+++.++.|++|..++++ ++|++ .++ +++||.||.|--. +.+++.+
T Consensus 104 ~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~-v~v~~--~~~--~~~adlvIgADG~~S~vR~~l 166 (374)
T PRK06617 104 SDFKKILLSKITNNPLITLIDNNQYQEVISHNDY-SIIKF--DDK--QIKCNLLIICDGANSKVRSHY 166 (374)
T ss_pred HHHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCe-EEEEE--cCC--EEeeCEEEEeCCCCchhHHhc
Confidence 34555665554 2 478899999999988876 88875 345 7899999988755 3445443
No 192
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=65.78 E-value=23 Score=36.53 Aligned_cols=57 Identities=14% Similarity=0.086 Sum_probs=37.6
Q ss_pred HHHHHHHHHh---ccceecCceeeeEEEcC--CCceEEEEeC-CCCc-eEEecCEEEEcCChHH
Q 014922 164 MLPEAISKRL---GSKVKLSWKLSGVKKLD--SGEYSLTYET-PEGL-VSLRSRSVVMTVPSYV 220 (416)
Q Consensus 164 ~l~~~L~~~l---g~~I~l~~~V~~I~~~~--~~~v~v~~~~-~~g~-~~~~ad~VI~a~p~~~ 220 (416)
.+..+|++.. |++|+.+++|++|..++ ++.+.|++.. .+|. .++.+|.||+|+-+..
T Consensus 233 rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws 296 (627)
T PLN02464 233 RLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFC 296 (627)
T ss_pred HHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhH
Confidence 4555555544 67999999999998763 4423344321 2332 2689999999998853
No 193
>PRK13984 putative oxidoreductase; Provisional
Probab=65.38 E-value=7.6 Score=39.88 Aligned_cols=36 Identities=28% Similarity=0.410 Sum_probs=31.4
Q ss_pred CCCCEEEeeccCCCCchhHHHHHHHHHHHHHHHHhh
Q 014922 376 GYQGLFLGGNYVAGVALGRCVESAYEVASEVSNFLS 411 (416)
Q Consensus 376 ~~~~l~~aG~~~~g~~~~~ai~sg~~aA~~il~~l~ 411 (416)
..++||.+||-..+..+-.|+..|+.||..|...|.
T Consensus 567 s~~gVfAaGD~~~~~~~v~Ai~~G~~AA~~I~~~L~ 602 (604)
T PRK13984 567 SIPWLFAGGDIVHGPDIIHGVADGYWAAEGIDMYLR 602 (604)
T ss_pred CCCCEEEecCcCCchHHHHHHHHHHHHHHHHHHHhc
Confidence 468999999998776666799999999999998875
No 194
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=64.95 E-value=8 Score=34.75 Aligned_cols=36 Identities=25% Similarity=0.308 Sum_probs=27.2
Q ss_pred CCCCEEEeec---cCC-----CCchhHHHHHHHHHHHHHHHHhh
Q 014922 376 GYQGLFLGGN---YVA-----GVALGRCVESAYEVASEVSNFLS 411 (416)
Q Consensus 376 ~~~~l~~aG~---~~~-----g~~~~~ai~sg~~aA~~il~~l~ 411 (416)
-+|+||++|= .++ |+-.++-+.||++||+.|++.++
T Consensus 211 ~~~g~~~~gm~~~~~~~~~rmgp~fg~m~~sg~~~a~~~~~~~~ 254 (254)
T TIGR00292 211 VVPNLYVAGMAVAAVHGLPRMGPIFGGMLLSGKHVAEQILEKLK 254 (254)
T ss_pred ccCCEEEechhhhhhcCCCCcCchHHHHHHhhHHHHHHHHHHhC
Confidence 3699999993 222 34456688999999999998763
No 195
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=64.94 E-value=18 Score=35.34 Aligned_cols=43 Identities=12% Similarity=0.140 Sum_probs=30.2
Q ss_pred HHhccceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCCh
Q 014922 171 KRLGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPS 218 (416)
Q Consensus 171 ~~lg~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~ 218 (416)
+..|.+|+++++|++|+.+ ++.+.+. ++++ ++.||.||+++..
T Consensus 202 ~~~gI~v~~~~~v~~i~~~-~~~~~v~--~~~~--~i~~d~vi~a~G~ 244 (444)
T PRK09564 202 RENGVELHLNEFVKSLIGE-DKVEGVV--TDKG--EYEADVVIVATGV 244 (444)
T ss_pred HHCCCEEEcCCEEEEEecC-CcEEEEE--eCCC--EEEcCEEEECcCC
Confidence 3446789999999999754 3313343 3444 6899999998865
No 196
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=64.92 E-value=7 Score=33.98 Aligned_cols=37 Identities=30% Similarity=0.416 Sum_probs=28.8
Q ss_pred CCCCEEEeec---cCC-----CCchhHHHHHHHHHHHHHHHHhhh
Q 014922 376 GYQGLFLGGN---YVA-----GVALGRCVESAYEVASEVSNFLSQ 412 (416)
Q Consensus 376 ~~~~l~~aG~---~~~-----g~~~~~ai~sg~~aA~~il~~l~~ 412 (416)
-+||||+||= ..+ |+-.++-+.||+.||+.|++.|+.
T Consensus 217 V~pgL~vaGMa~~av~G~pRMGPiFGgMllSGkkaAe~i~e~L~~ 261 (262)
T COG1635 217 VYPGLYVAGMAVNAVHGLPRMGPIFGGMLLSGKKAAEEILEKLKL 261 (262)
T ss_pred ccCCeEeehhhHHhhcCCcccCchhhhhhhchHHHHHHHHHHhhc
Confidence 4699999993 222 444567999999999999998864
No 197
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=64.82 E-value=24 Score=34.93 Aligned_cols=45 Identities=24% Similarity=0.316 Sum_probs=31.5
Q ss_pred hccceecCceeeeEEE-cCCCceEEEEeCCCCc-eEEecCEEEEcCChH
Q 014922 173 LGSKVKLSWKLSGVKK-LDSGEYSLTYETPEGL-VSLRSRSVVMTVPSY 219 (416)
Q Consensus 173 lg~~I~l~~~V~~I~~-~~~~~v~v~~~~~~g~-~~~~ad~VI~a~p~~ 219 (416)
.|.+|++++.|++|+. .+++ +.+.. +.+|+ +++.+|.||+++...
T Consensus 234 ~gI~i~~~~~v~~i~~~~~~~-~~~~~-~~~g~~~~i~~D~vi~a~G~~ 280 (472)
T PRK05976 234 LGVRVVTGAKVLGLTLKKDGG-VLIVA-EHNGEEKTLEADKVLVSVGRR 280 (472)
T ss_pred cCCEEEeCcEEEEEEEecCCC-EEEEE-EeCCceEEEEeCEEEEeeCCc
Confidence 3679999999999986 2344 44432 23443 468999999998664
No 198
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=64.72 E-value=20 Score=36.28 Aligned_cols=45 Identities=16% Similarity=0.243 Sum_probs=30.0
Q ss_pred ccceecCceeeeEEEcCCCceEEEEe--CC-------------CCceEEecCEEEEcCCh
Q 014922 174 GSKVKLSWKLSGVKKLDSGEYSLTYE--TP-------------EGLVSLRSRSVVMTVPS 218 (416)
Q Consensus 174 g~~I~l~~~V~~I~~~~~~~v~v~~~--~~-------------~g~~~~~ad~VI~a~p~ 218 (416)
+.+|+++++++++..++++.+.|... .. ++...+.|+.||+|+--
T Consensus 166 gv~i~~~t~~~~Li~~~g~V~Gv~~~~~~~~~~~~~~~~~~~~~~~~~i~AkaVILATGG 225 (549)
T PRK12834 166 LVRFRFRHRVDELVVTDGAVTGVRGTVLEPSDAERGEASSREVVGEFELRAQAVIVTSGG 225 (549)
T ss_pred CceEEecCEeeEEEEeCCEEEEEEEEecccccccccccccccccceEEEecCEEEEeCCC
Confidence 36999999999998865542234321 11 12246789999999844
No 199
>PRK13748 putative mercuric reductase; Provisional
Probab=64.44 E-value=17 Score=36.84 Aligned_cols=49 Identities=27% Similarity=0.390 Sum_probs=35.1
Q ss_pred HHHHHHHHh---ccceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCCh
Q 014922 165 LPEAISKRL---GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPS 218 (416)
Q Consensus 165 l~~~L~~~l---g~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~ 218 (416)
+.+.+.+.+ |.+|++++.|++|+.++++ +.+. +.++ ++.+|.||+++..
T Consensus 312 ~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~-~~v~--~~~~--~i~~D~vi~a~G~ 363 (561)
T PRK13748 312 IGEAVTAAFRAEGIEVLEHTQASQVAHVDGE-FVLT--TGHG--ELRADKLLVATGR 363 (561)
T ss_pred HHHHHHHHHHHCCCEEEcCCEEEEEEecCCE-EEEE--ecCC--eEEeCEEEEccCC
Confidence 444444444 5689999999999876654 6664 3455 6899999999865
No 200
>PRK08071 L-aspartate oxidase; Provisional
Probab=63.81 E-value=17 Score=36.46 Aligned_cols=55 Identities=15% Similarity=0.031 Sum_probs=37.3
Q ss_pred HHHHHHHHHh--ccceecCceeeeEEEcCCCceEEEEeCCCCc-eEEecCEEEEcCCh
Q 014922 164 MLPEAISKRL--GSKVKLSWKLSGVKKLDSGEYSLTYETPEGL-VSLRSRSVVMTVPS 218 (416)
Q Consensus 164 ~l~~~L~~~l--g~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~-~~~~ad~VI~a~p~ 218 (416)
.+.++|.+.+ +.+|+.++.|++|..++++.+.|.....+|+ ..+.|+.||+|+-.
T Consensus 131 ~i~~~L~~~~~~gV~i~~~~~v~~Li~~~g~v~Gv~~~~~~g~~~~i~Ak~VVlATGG 188 (510)
T PRK08071 131 NLLEHLLQELVPHVTVVEQEMVIDLIIENGRCIGVLTKDSEGKLKRYYADYVVLASGG 188 (510)
T ss_pred HHHHHHHHHHhcCCEEEECeEhhheeecCCEEEEEEEEECCCcEEEEEcCeEEEecCC
Confidence 4666776655 5689999999999876554222433233443 36789999999855
No 201
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=63.16 E-value=24 Score=36.56 Aligned_cols=45 Identities=11% Similarity=0.081 Sum_probs=32.0
Q ss_pred ccceecCceeeeEEEcCCCceEEEEeC-CCCc-eEEecCEEEEcCCh
Q 014922 174 GSKVKLSWKLSGVKKLDSGEYSLTYET-PEGL-VSLRSRSVVMTVPS 218 (416)
Q Consensus 174 g~~I~l~~~V~~I~~~~~~~v~v~~~~-~~g~-~~~~ad~VI~a~p~ 218 (416)
+.+|++++.|+++..++++++.|.... .+|. ..+.|+.||+|+--
T Consensus 184 gV~i~~~t~v~~Li~d~g~V~GV~~~~~~~g~~~~i~AkaVVLATGG 230 (640)
T PRK07573 184 TVKMYTRTEMLDLVVVDGRARGIVARNLVTGEIERHTADAVVLATGG 230 (640)
T ss_pred CCEEEeceEEEEEEEeCCEEEEEEEEECCCCcEEEEECCEEEECCCC
Confidence 569999999999987665423344322 2453 36889999999866
No 202
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=62.94 E-value=15 Score=35.05 Aligned_cols=45 Identities=4% Similarity=0.076 Sum_probs=32.6
Q ss_pred HHHHHhccceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCChH
Q 014922 168 AISKRLGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSY 219 (416)
Q Consensus 168 ~L~~~lg~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~~ 219 (416)
.+.+..+.+++++++|++|+.++. +|+. +|. .+.||+||+|+-..
T Consensus 66 ~~~~~~gv~~~~~~~V~~id~~~~---~v~~---~~~-~~~yd~LVlATG~~ 110 (377)
T PRK04965 66 EFAEQFNLRLFPHTWVTDIDAEAQ---VVKS---QGN-QWQYDKLVLATGAS 110 (377)
T ss_pred HHHHhCCCEEECCCEEEEEECCCC---EEEE---CCe-EEeCCEEEECCCCC
Confidence 344555678999999999987643 3432 343 78999999998763
No 203
>PLN02463 lycopene beta cyclase
Probab=62.81 E-value=21 Score=35.02 Aligned_cols=50 Identities=16% Similarity=0.183 Sum_probs=35.4
Q ss_pred HHHHHHHHh---ccceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCChH
Q 014922 165 LPEAISKRL---GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSY 219 (416)
Q Consensus 165 l~~~L~~~l---g~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~~ 219 (416)
+-+.|.+.+ |.+++ ++.|++|+..+++ +.|++ .+|. +++||.||.|.-..
T Consensus 116 L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~~~-~~V~~--~dG~-~i~A~lVI~AdG~~ 168 (447)
T PLN02463 116 LKSKMLERCIANGVQFH-QAKVKKVVHEESK-SLVVC--DDGV-KIQASLVLDATGFS 168 (447)
T ss_pred HHHHHHHHHhhcCCEEE-eeEEEEEEEcCCe-EEEEE--CCCC-EEEcCEEEECcCCC
Confidence 344444443 45664 6799999988776 77874 4664 89999999998653
No 204
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=62.63 E-value=21 Score=37.99 Aligned_cols=51 Identities=16% Similarity=0.146 Sum_probs=36.2
Q ss_pred HHHHHHHHHhccceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCCh
Q 014922 164 MLPEAISKRLGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPS 218 (416)
Q Consensus 164 ~l~~~L~~~lg~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~ 218 (416)
.+.....+..|.+|++++.|++|..++.. ..|++ .+|+ ++++|.||+++..
T Consensus 186 ~~l~~~l~~~GV~v~~~~~v~~i~~~~~~-~~v~~--~dG~-~i~~D~Vi~a~G~ 236 (785)
T TIGR02374 186 RLLQRELEQKGLTFLLEKDTVEIVGATKA-DRIRF--KDGS-SLEADLIVMAAGI 236 (785)
T ss_pred HHHHHHHHHcCCEEEeCCceEEEEcCCce-EEEEE--CCCC-EEEcCEEEECCCC
Confidence 34444444557799999999999765432 45553 4675 8999999999865
No 205
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=62.50 E-value=10 Score=37.00 Aligned_cols=35 Identities=11% Similarity=0.236 Sum_probs=29.0
Q ss_pred CCEEEeeccC--------CCCchhHHHHHHHHHHHHHHHHhhh
Q 014922 378 QGLFLGGNYV--------AGVALGRCVESAYEVASEVSNFLSQ 412 (416)
Q Consensus 378 ~~l~~aG~~~--------~g~~~~~ai~sg~~aA~~il~~l~~ 412 (416)
+++.++||.. .+.|+..|+.||..||+.|++.+..
T Consensus 295 ~g~llvGDAAg~v~p~g~~g~Gi~~A~~SG~lAAeai~~a~~~ 337 (428)
T PRK10157 295 DGVLIAGDAAGMCMNLGFTIRGMDLAIAAGEAAAKTVLSAMKS 337 (428)
T ss_pred CCeEEEecccccccccCceeeeHHHHHHHHHHHHHHHHHHHhc
Confidence 7999999743 3567888999999999999887754
No 206
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=62.35 E-value=8.7 Score=36.61 Aligned_cols=62 Identities=27% Similarity=0.315 Sum_probs=45.2
Q ss_pred ceeehhhhHhH-HHHHHHHHh-------ccceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCChH
Q 014922 154 TVGSFRKGLTM-LPEAISKRL-------GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSY 219 (416)
Q Consensus 154 ~~~~~~gG~~~-l~~~L~~~l-------g~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~~ 219 (416)
++|.-++-|+. |++.|.+.- |++|+-|+.|.++....+. +.+.+ .||. +++.|.||+|+--.
T Consensus 379 QvF~Ek~nm~kiLPeyls~wt~ekir~~GV~V~pna~v~sv~~~~~n-l~lkL--~dG~-~l~tD~vVvavG~e 448 (659)
T KOG1346|consen 379 QVFEEKYNMEKILPEYLSQWTIEKIRKGGVDVRPNAKVESVRKCCKN-LVLKL--SDGS-ELRTDLVVVAVGEE 448 (659)
T ss_pred EeecccCChhhhhHHHHHHHHHHHHHhcCceeccchhhhhhhhhccc-eEEEe--cCCC-eeeeeeEEEEecCC
Confidence 34444555665 667776642 5699999999999988765 66664 6885 89999999998543
No 207
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=62.17 E-value=20 Score=36.20 Aligned_cols=51 Identities=8% Similarity=0.114 Sum_probs=36.5
Q ss_pred cceecCceeeeEEEcCCC--ceE-EEEeCC-CCc-eEEecCEEEEcCChHHHHhcc
Q 014922 175 SKVKLSWKLSGVKKLDSG--EYS-LTYETP-EGL-VSLRSRSVVMTVPSYVASSLL 225 (416)
Q Consensus 175 ~~I~l~~~V~~I~~~~~~--~v~-v~~~~~-~g~-~~~~ad~VI~a~p~~~~~~ll 225 (416)
.+|++++.|++|..++++ .++ |.|.+. +|+ .++.|+.||+|+..-...+||
T Consensus 229 ~~l~~~a~v~~i~~d~~~~~~v~~v~~~d~~~g~~~~v~A~~vVLAagaIetpRLL 284 (544)
T TIGR02462 229 FTLLTNHRCTRLVRNETNESEIEAALVRDLLSGDRFEIKADVYVLACGAVHNPQIL 284 (544)
T ss_pred EEEEcCCEEEEEEeCCCCCceeEEEEEEECCCCcEEEEECCEEEEccCchhhHHHH
Confidence 489999999999987532 243 555432 343 468999999999887776663
No 208
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=61.83 E-value=13 Score=37.50 Aligned_cols=51 Identities=6% Similarity=0.069 Sum_probs=34.4
Q ss_pred ccceecCceeeeEEEcCCCceEEEEeCCCCc-eEEecCEEEEcCChHHHHhc
Q 014922 174 GSKVKLSWKLSGVKKLDSGEYSLTYETPEGL-VSLRSRSVVMTVPSYVASSL 224 (416)
Q Consensus 174 g~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~-~~~~ad~VI~a~p~~~~~~l 224 (416)
+.+|++++.|++|..++++.+.|.+...++. ....++.||++.-.-...+|
T Consensus 208 nl~i~~~~~V~rI~~~~~ra~GV~~~~~~~~~~~~~ak~VIlaAGai~SP~L 259 (532)
T TIGR01810 208 NLEVQTRAFVTKINFEGNRATGVEFKKGGRKEHTEANKEVILSAGAINSPQL 259 (532)
T ss_pred CeEEEeCCEEEEEEecCCeEEEEEEEeCCcEEEEEEeeeEEEccCCCCCHHH
Confidence 3599999999999987665344665433222 23578999999876444443
No 209
>PTZ00058 glutathione reductase; Provisional
Probab=61.34 E-value=30 Score=35.17 Aligned_cols=52 Identities=6% Similarity=0.082 Sum_probs=35.0
Q ss_pred HHHHHHHHh---ccceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCCh
Q 014922 165 LPEAISKRL---GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPS 218 (416)
Q Consensus 165 l~~~L~~~l---g~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~ 218 (416)
+.+.+.+.+ |.+|++++.|.+|+.++++.+.+.+ +.++ +++++|.||+++..
T Consensus 280 i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~v~~-~~~~-~~i~aD~VlvA~Gr 334 (561)
T PTZ00058 280 IINELENDMKKNNINIITHANVEEIEKVKEKNLTIYL-SDGR-KYEHFDYVIYCVGR 334 (561)
T ss_pred HHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcEEEEE-CCCC-EEEECCEEEECcCC
Confidence 334444443 5689999999999876442265543 2333 47999999999764
No 210
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=61.11 E-value=16 Score=34.81 Aligned_cols=49 Identities=24% Similarity=0.285 Sum_probs=36.2
Q ss_pred hHHHHHHHHHhccceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCChH
Q 014922 163 TMLPEAISKRLGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSY 219 (416)
Q Consensus 163 ~~l~~~L~~~lg~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~~ 219 (416)
..+.+.+.+.++..|++++.|++|+ +++ |++ .+|. +++||.||-|.+.+
T Consensus 89 ~~f~~~l~~~l~~~i~~~~~V~~v~--~~~-v~l----~dg~-~~~A~~VI~A~G~~ 137 (370)
T TIGR01789 89 TRFHEGLLQAFPEGVILGRKAVGLD--ADG-VDL----APGT-RINARSVIDCRGFK 137 (370)
T ss_pred HHHHHHHHHhhcccEEecCEEEEEe--CCE-EEE----CCCC-EEEeeEEEECCCCC
Confidence 3466777777765599999999993 344 555 2564 89999999999865
No 211
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=60.57 E-value=12 Score=38.73 Aligned_cols=38 Identities=18% Similarity=0.355 Sum_probs=31.6
Q ss_pred CCCCEEEeeccCCCCch-hHHHHHHHHHHHHHHHHhhhc
Q 014922 376 GYQGLFLGGNYVAGVAL-GRCVESAYEVASEVSNFLSQY 413 (416)
Q Consensus 376 ~~~~l~~aG~~~~g~~~-~~ai~sg~~aA~~il~~l~~~ 413 (416)
..++||.+||-..|..+ ..|+..|+.||..|...|...
T Consensus 599 s~~gVfA~GD~~~g~~~vv~Ai~~Gr~AA~~i~~~l~~~ 637 (639)
T PRK12809 599 HLKKVFAGGDAVHGADLVVTAMAAGRQAARDMLTLFDTK 637 (639)
T ss_pred CCCCEEEcCCCCCCchHHHHHHHHHHHHHHHHHHHHhhh
Confidence 46899999998876553 569999999999999988654
No 212
>PRK12831 putative oxidoreductase; Provisional
Probab=59.40 E-value=14 Score=36.64 Aligned_cols=37 Identities=27% Similarity=0.519 Sum_probs=30.6
Q ss_pred CCCCEEEeeccCCCCc-hhHHHHHHHHHHHHHHHHhhh
Q 014922 376 GYQGLFLGGNYVAGVA-LGRCVESAYEVASEVSNFLSQ 412 (416)
Q Consensus 376 ~~~~l~~aG~~~~g~~-~~~ai~sg~~aA~~il~~l~~ 412 (416)
..++||.+||...|.. +..|+..|+.||..|...|..
T Consensus 425 s~pgVfAaGD~~~g~~~v~~Ai~~G~~AA~~I~~~L~~ 462 (464)
T PRK12831 425 SKEGVFAGGDAVTGAATVILAMGAGKKAAKAIDEYLSK 462 (464)
T ss_pred CCCCEEEeCCCCCCchHHHHHHHHHHHHHHHHHHHhcC
Confidence 4689999999876553 456999999999999988854
No 213
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=59.25 E-value=31 Score=35.40 Aligned_cols=45 Identities=9% Similarity=0.154 Sum_probs=31.1
Q ss_pred ccceecCceeeeEEEcCC-CceEEEEeC-CCCc-eEEecCEEEEcCCh
Q 014922 174 GSKVKLSWKLSGVKKLDS-GEYSLTYET-PEGL-VSLRSRSVVMTVPS 218 (416)
Q Consensus 174 g~~I~l~~~V~~I~~~~~-~~v~v~~~~-~~g~-~~~~ad~VI~a~p~ 218 (416)
+.+|+++++|++|..+++ +++.|...+ .+|. ..+.|+.||+|+--
T Consensus 147 gV~i~~~t~v~~Li~dd~grV~GV~~~~~~~g~~~~i~AkaVVLATGG 194 (603)
T TIGR01811 147 LVEKYEGWEMLDIIVVDGNRARGIIARNLVTGEIETHSADAVILATGG 194 (603)
T ss_pred CcEEEeCcEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCC
Confidence 468999999999987654 323343322 2443 46889999999955
No 214
>PRK07395 L-aspartate oxidase; Provisional
Probab=58.08 E-value=18 Score=36.70 Aligned_cols=54 Identities=7% Similarity=0.052 Sum_probs=36.1
Q ss_pred HHHHHHHHHh----ccceecCceeeeEEEcC--CCceEEEEeCCCCc-eEEecCEEEEcCCh
Q 014922 164 MLPEAISKRL----GSKVKLSWKLSGVKKLD--SGEYSLTYETPEGL-VSLRSRSVVMTVPS 218 (416)
Q Consensus 164 ~l~~~L~~~l----g~~I~l~~~V~~I~~~~--~~~v~v~~~~~~g~-~~~~ad~VI~a~p~ 218 (416)
.+.++|.+.+ +.+|++++.|+++..++ ++.+.|... .+|. ..+.|+.||+|+-.
T Consensus 135 ~i~~~L~~~~~~~~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~-~~g~~~~i~AkaVILATGG 195 (553)
T PRK07395 135 AIVTTLTEQVLQRPNIEIISQALALSLWLEPETGRCQGISLL-YQGQITWLRAGAVILATGG 195 (553)
T ss_pred HHHHHHHHHHhhcCCcEEEECcChhhheecCCCCEEEEEEEE-ECCeEEEEEcCEEEEcCCC
Confidence 4666666543 46899999999998764 332234332 2443 35789999999976
No 215
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=58.05 E-value=21 Score=34.86 Aligned_cols=47 Identities=15% Similarity=0.055 Sum_probs=33.9
Q ss_pred cceecCceeeeEEEc-------CCCceEEEEeCCCCceEEecCEEEEcCCh-HHHHhcc
Q 014922 175 SKVKLSWKLSGVKKL-------DSGEYSLTYETPEGLVSLRSRSVVMTVPS-YVASSLL 225 (416)
Q Consensus 175 ~~I~l~~~V~~I~~~-------~~~~v~v~~~~~~g~~~~~ad~VI~a~p~-~~~~~ll 225 (416)
.+|+++++|++|+.. +++ ++|++ .+|+ +++||.||-|--. ..+++.+
T Consensus 135 v~i~~~~~v~~i~~~~~~~~~~~~~-v~v~~--~~g~-~i~a~llVgADG~~S~vR~~~ 189 (437)
T TIGR01989 135 VKILNPARLISVTIPSKYPNDNSNW-VHITL--SDGQ-VLYTKLLIGADGSNSNVRKAA 189 (437)
T ss_pred eEEecCCeeEEEEeccccccCCCCc-eEEEE--cCCC-EEEeeEEEEecCCCChhHHHc
Confidence 589999999999853 234 77764 5674 8999999988655 4455544
No 216
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=58.03 E-value=36 Score=32.59 Aligned_cols=44 Identities=16% Similarity=0.252 Sum_probs=34.2
Q ss_pred ceecCceeeeEEEcCCCceEEEEeCC--CCceEEecCEEEEcCChH
Q 014922 176 KVKLSWKLSGVKKLDSGEYSLTYETP--EGLVSLRSRSVVMTVPSY 219 (416)
Q Consensus 176 ~I~l~~~V~~I~~~~~~~v~v~~~~~--~g~~~~~ad~VI~a~p~~ 219 (416)
++..++.|++++.+++|.+.+++... +...+++.|+||+|+--.
T Consensus 294 ~l~~~~ev~~~~~~G~g~~~l~~~~~~~~~~~t~~~D~vIlATGY~ 339 (436)
T COG3486 294 RLLSLSEVQSVEPAGDGRYRLTLRHHETGELETVETDAVILATGYR 339 (436)
T ss_pred eeccccceeeeecCCCceEEEEEeeccCCCceEEEeeEEEEecccc
Confidence 68899999999998876577776421 223588999999999775
No 217
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=57.88 E-value=16 Score=36.28 Aligned_cols=37 Identities=14% Similarity=0.285 Sum_probs=30.8
Q ss_pred CCCCEEEeeccCCCCc-hhHHHHHHHHHHHHHHHHhhh
Q 014922 376 GYQGLFLGGNYVAGVA-LGRCVESAYEVASEVSNFLSQ 412 (416)
Q Consensus 376 ~~~~l~~aG~~~~g~~-~~~ai~sg~~aA~~il~~l~~ 412 (416)
..++||.+||...+.. +..|+..|+.||..|...|..
T Consensus 429 s~~gVfa~GD~~~g~~~~~~Av~~G~~AA~~i~~~L~g 466 (471)
T PRK12810 429 SNPKVFAAGDMRRGQSLVVWAIAEGRQAARAIDAYLMG 466 (471)
T ss_pred CCCCEEEccccCCCchhHHHHHHHHHHHHHHHHHHHhc
Confidence 4689999999886543 456999999999999998864
No 218
>PTZ00052 thioredoxin reductase; Provisional
Probab=57.86 E-value=31 Score=34.47 Aligned_cols=50 Identities=12% Similarity=0.175 Sum_probs=35.7
Q ss_pred HHHHHHHh---ccceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCChH
Q 014922 166 PEAISKRL---GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSY 219 (416)
Q Consensus 166 ~~~L~~~l---g~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~~ 219 (416)
.+.+.+.+ |.++++++.|++|+..+++ +.|.+ .+|+ ++.+|.||+++...
T Consensus 225 ~~~l~~~l~~~GV~i~~~~~v~~v~~~~~~-~~v~~--~~g~-~i~~D~vl~a~G~~ 277 (499)
T PTZ00052 225 SEKVVEYMKEQGTLFLEGVVPINIEKMDDK-IKVLF--SDGT-TELFDTVLYATGRK 277 (499)
T ss_pred HHHHHHHHHHcCCEEEcCCeEEEEEEcCCe-EEEEE--CCCC-EEEcCEEEEeeCCC
Confidence 34444444 5689999999999876554 66654 3564 78999999998653
No 219
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=57.70 E-value=14 Score=38.38 Aligned_cols=37 Identities=22% Similarity=0.384 Sum_probs=31.1
Q ss_pred CCCCEEEeeccCCCCch-hHHHHHHHHHHHHHHHHhhh
Q 014922 376 GYQGLFLGGNYVAGVAL-GRCVESAYEVASEVSNFLSQ 412 (416)
Q Consensus 376 ~~~~l~~aG~~~~g~~~-~~ai~sg~~aA~~il~~l~~ 412 (416)
..++||.+||-..|..+ ..|+..|+.||..|...|+.
T Consensus 616 s~~gVfAaGD~~~g~~~vv~Ai~~Gr~AA~~I~~~L~~ 653 (654)
T PRK12769 616 SNPKIFAGGDAVRGADLVVTAMAEGRHAAQGIIDWLGV 653 (654)
T ss_pred CCCCEEEcCCcCCCCcHHHHHHHHHHHHHHHHHHHhCc
Confidence 46899999998876554 56999999999999998864
No 220
>PLN02697 lycopene epsilon cyclase
Probab=57.17 E-value=37 Score=34.17 Aligned_cols=53 Identities=21% Similarity=0.301 Sum_probs=37.0
Q ss_pred HHHHHHHHHh---ccceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCChHH
Q 014922 164 MLPEAISKRL---GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYV 220 (416)
Q Consensus 164 ~l~~~L~~~l---g~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~~~ 220 (416)
.|-+.|.+.+ |.++ +++.|++|+.++++ +.+.. ..+|. +++|+.||.|.-...
T Consensus 193 ~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~~-~~vv~-~~dG~-~i~A~lVI~AdG~~S 248 (529)
T PLN02697 193 LLHEELLRRCVESGVSY-LSSKVDRITEASDG-LRLVA-CEDGR-VIPCRLATVASGAAS 248 (529)
T ss_pred HHHHHHHHHHHhcCCEE-EeeEEEEEEEcCCc-EEEEE-EcCCc-EEECCEEEECCCcCh
Confidence 3445565554 4566 78999999987776 65432 24553 799999999987755
No 221
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=56.92 E-value=26 Score=34.24 Aligned_cols=44 Identities=11% Similarity=0.137 Sum_probs=31.7
Q ss_pred hccceecCceeeeEEEcCCCceEEEEeCCCCceEEe--cCEEEEcCChH
Q 014922 173 LGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLR--SRSVVMTVPSY 219 (416)
Q Consensus 173 lg~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~--ad~VI~a~p~~ 219 (416)
.+.++++++.|++|+.+++. +.++- ..+|. +++ ||++|+|+-..
T Consensus 69 ~gv~~~~~~~V~~id~~~~~-v~~~~-~~~~~-~~~~~yd~lviAtG~~ 114 (444)
T PRK09564 69 SGIDVKTEHEVVKVDAKNKT-ITVKN-LKTGS-IFNDTYDKLMIATGAR 114 (444)
T ss_pred CCCeEEecCEEEEEECCCCE-EEEEE-CCCCC-EEEecCCEEEECCCCC
Confidence 35688999999999987664 66641 12343 555 99999999763
No 222
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=56.81 E-value=37 Score=34.85 Aligned_cols=56 Identities=11% Similarity=0.136 Sum_probs=38.4
Q ss_pred HHHHHHHHHh---ccceecCceeeeEEEcC-CCceEEEE-eCCCCc-eEEecCEEEEcCChH
Q 014922 164 MLPEAISKRL---GSKVKLSWKLSGVKKLD-SGEYSLTY-ETPEGL-VSLRSRSVVMTVPSY 219 (416)
Q Consensus 164 ~l~~~L~~~l---g~~I~l~~~V~~I~~~~-~~~v~v~~-~~~~g~-~~~~ad~VI~a~p~~ 219 (416)
.+...|.+.+ +.+|.++++|+++..++ ++++.|.. ...+|. ..+.|+.||+|+--.
T Consensus 150 ~i~~~L~~~~~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~ 211 (598)
T PRK09078 150 AILHTLYQQSLKHNAEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGGY 211 (598)
T ss_pred HHHHHHHHHHhhcCCEEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCC
Confidence 4667776654 56999999999998865 33233432 233553 478899999998663
No 223
>PRK07804 L-aspartate oxidase; Provisional
Probab=56.57 E-value=36 Score=34.40 Aligned_cols=55 Identities=11% Similarity=0.164 Sum_probs=37.4
Q ss_pred HHHHHHHHHh---ccceecCceeeeEEEcCC-CceEEEEe-----CCCCceEEecCEEEEcCCh
Q 014922 164 MLPEAISKRL---GSKVKLSWKLSGVKKLDS-GEYSLTYE-----TPEGLVSLRSRSVVMTVPS 218 (416)
Q Consensus 164 ~l~~~L~~~l---g~~I~l~~~V~~I~~~~~-~~v~v~~~-----~~~g~~~~~ad~VI~a~p~ 218 (416)
.+.+.|.+.+ +.+|+.++.|++|..+++ +.+.|... ..++...+.|+.||+|+-.
T Consensus 145 ~i~~~L~~~~~~~gV~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG 208 (541)
T PRK07804 145 EVQRALDAAVRADPLDIREHALALDLLTDGTGAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGG 208 (541)
T ss_pred HHHHHHHHHHHhCCCEEEECeEeeeeEEcCCCeEEEEEEEeccCCCCCcEEEEEcCeEEECCCC
Confidence 4666666654 568999999999988754 32223332 2333346899999999866
No 224
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=55.53 E-value=40 Score=34.39 Aligned_cols=56 Identities=16% Similarity=0.348 Sum_probs=37.4
Q ss_pred HHHHHHHHHh---ccceecCceeeeEEEcCCCceEEE-EeCCCCc-eEEecCEEEEcCChH
Q 014922 164 MLPEAISKRL---GSKVKLSWKLSGVKKLDSGEYSLT-YETPEGL-VSLRSRSVVMTVPSY 219 (416)
Q Consensus 164 ~l~~~L~~~l---g~~I~l~~~V~~I~~~~~~~v~v~-~~~~~g~-~~~~ad~VI~a~p~~ 219 (416)
.+.+.|.+.+ +.+|..++.|++|..++++++.+. +...+|. ..+.|++||+|+-..
T Consensus 136 ~i~~~L~~~~~~~gi~i~~~t~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~ 196 (575)
T PRK05945 136 AILHELVNNLRRYGVTIYDEWYVMRLILEDNQAKGVVMYHIADGRLEVVRAKAVMFATGGY 196 (575)
T ss_pred HHHHHHHHHHhhCCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCeEEEEECCEEEECCCCC
Confidence 4666666654 568999999999987655422232 2223453 358999999998663
No 225
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=55.09 E-value=44 Score=34.18 Aligned_cols=56 Identities=11% Similarity=0.127 Sum_probs=37.3
Q ss_pred HHHHHHHHHh---ccceecCceeeeEEEcC----CCceEEEE-eCCCCc-eEEecCEEEEcCChH
Q 014922 164 MLPEAISKRL---GSKVKLSWKLSGVKKLD----SGEYSLTY-ETPEGL-VSLRSRSVVMTVPSY 219 (416)
Q Consensus 164 ~l~~~L~~~l---g~~I~l~~~V~~I~~~~----~~~v~v~~-~~~~g~-~~~~ad~VI~a~p~~ 219 (416)
.+.+.|.+.+ +.+|..++.|++|..++ ++++.|.. ...+|+ ..+.|+.||+|+-..
T Consensus 141 ~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~ 205 (583)
T PRK08205 141 MILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGS 205 (583)
T ss_pred HHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCC
Confidence 4566666654 56899999999998765 43222332 223453 367899999998663
No 226
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=54.99 E-value=16 Score=36.03 Aligned_cols=35 Identities=26% Similarity=0.558 Sum_probs=28.4
Q ss_pred CCCCEEEeeccCCCCc-hhHHHHHHHHHHHHHHHHh
Q 014922 376 GYQGLFLGGNYVAGVA-LGRCVESAYEVASEVSNFL 410 (416)
Q Consensus 376 ~~~~l~~aG~~~~g~~-~~~ai~sg~~aA~~il~~l 410 (416)
..++||.+||...+.. +..|+..|+.||..|...|
T Consensus 414 s~~~VfA~GD~~~g~~~v~~Ai~~G~~AA~~I~~~L 449 (449)
T TIGR01316 414 SIPGVFAGGDIILGAATVIRAMGQGKRAAKSINEYL 449 (449)
T ss_pred CCCCEEEecCCCCCcHHHHHHHHHHHHHHHHHHhhC
Confidence 4689999999886554 4569999999999998754
No 227
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=54.92 E-value=18 Score=34.68 Aligned_cols=40 Identities=15% Similarity=0.219 Sum_probs=29.5
Q ss_pred hhhcCCCCEEEeeccCCCCchhHHHHHHHHHHHHHHHHhh
Q 014922 372 LRDNGYQGLFLGGNYVAGVALGRCVESAYEVASEVSNFLS 411 (416)
Q Consensus 372 l~~~~~~~l~~aG~~~~g~~~~~ai~sg~~aA~~il~~l~ 411 (416)
|+...++|||+||+-....|...|..+|..|+..+...+.
T Consensus 350 l~~k~~~~lf~AGqi~G~~Gy~eaaa~G~~ag~na~~~~~ 389 (392)
T PF01134_consen 350 LETKKIPGLFFAGQINGTEGYEEAAAQGLIAGINAARRLQ 389 (392)
T ss_dssp SBBSSSBTEEE-GGGGTB-SHHHHHHHHHHHHHHHHHHHT
T ss_pred eEECCCCCceECCCCcchhHHHHHHHHHHHHHHHHHHHHc
Confidence 3432479999999876667788899999999988877654
No 228
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=54.90 E-value=35 Score=34.73 Aligned_cols=55 Identities=16% Similarity=0.198 Sum_probs=36.7
Q ss_pred HHHHHHHHh---ccceecCceeeeEEEcCCCceEEEE-eCCCCc-eEEecCEEEEcCChH
Q 014922 165 LPEAISKRL---GSKVKLSWKLSGVKKLDSGEYSLTY-ETPEGL-VSLRSRSVVMTVPSY 219 (416)
Q Consensus 165 l~~~L~~~l---g~~I~l~~~V~~I~~~~~~~v~v~~-~~~~g~-~~~~ad~VI~a~p~~ 219 (416)
+...|.+.+ +.+|..++.|++|..++++.+.|.. ...+|. ..+.|+.||+|+-..
T Consensus 131 i~~~L~~~~~~~gv~i~~~~~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~ 190 (566)
T TIGR01812 131 LLHTLYEQCLKLGVSFFNEYFALDLIHDDGRVRGVVAYDLKTGEIVFFRAKAVVLATGGY 190 (566)
T ss_pred HHHHHHHHHHHcCCEEEeccEEEEEEEeCCEEEEEEEEECCCCcEEEEECCeEEECCCcc
Confidence 555555543 6799999999999887654222332 223453 368999999999763
No 229
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=54.52 E-value=46 Score=33.94 Aligned_cols=58 Identities=14% Similarity=0.144 Sum_probs=39.1
Q ss_pred hHHHHHHHHHh---ccceecCceeeeEEEcC-CCceEEEE-eCCCCc-eEEecCEEEEcCChHH
Q 014922 163 TMLPEAISKRL---GSKVKLSWKLSGVKKLD-SGEYSLTY-ETPEGL-VSLRSRSVVMTVPSYV 220 (416)
Q Consensus 163 ~~l~~~L~~~l---g~~I~l~~~V~~I~~~~-~~~v~v~~-~~~~g~-~~~~ad~VI~a~p~~~ 220 (416)
..|..+|.+.+ +.+|..+++++++..++ ++++.|.. ...+|. ..+.|++||+|+-...
T Consensus 126 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 189 (570)
T PRK05675 126 HALLHTLYQGNLKNGTTFLNEWYAVDLVKNQDGAVVGVIAICIETGETVYIKSKATVLATGGAG 189 (570)
T ss_pred HHHHHHHHHHHhccCCEEEECcEEEEEEEcCCCeEEEEEEEEcCCCcEEEEecCeEEECCCCcc
Confidence 34677776654 56999999999998864 44223432 223554 4678999999997633
No 230
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=54.40 E-value=19 Score=36.67 Aligned_cols=38 Identities=26% Similarity=0.517 Sum_probs=30.9
Q ss_pred CCCCEEEeeccCCCCc-hhHHHHHHHHHHHHHHHHhhhc
Q 014922 376 GYQGLFLGGNYVAGVA-LGRCVESAYEVASEVSNFLSQY 413 (416)
Q Consensus 376 ~~~~l~~aG~~~~g~~-~~~ai~sg~~aA~~il~~l~~~ 413 (416)
..++||.+||...+.. +..|+..|+.||..|...|...
T Consensus 408 s~~~Vfa~GD~~~g~~~v~~Av~~G~~aA~~i~~~L~g~ 446 (564)
T PRK12771 408 GRPGVFAGGDMVPGPRTVTTAIGHGKKAARNIDAFLGGE 446 (564)
T ss_pred CCCCEEeccCcCCCchHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4689999999876543 4569999999999999888654
No 231
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=54.11 E-value=33 Score=34.88 Aligned_cols=57 Identities=9% Similarity=0.051 Sum_probs=38.2
Q ss_pred HHHHHHHHHh---ccceecCceeeeEEEcCCCceEEEEeC-CCCc-eEEecCEEEEcCChHH
Q 014922 164 MLPEAISKRL---GSKVKLSWKLSGVKKLDSGEYSLTYET-PEGL-VSLRSRSVVMTVPSYV 220 (416)
Q Consensus 164 ~l~~~L~~~l---g~~I~l~~~V~~I~~~~~~~v~v~~~~-~~g~-~~~~ad~VI~a~p~~~ 220 (416)
.+.+.|.+.+ +.+|..++.|+++..++++++.|.... .+|+ ..+.|+.||+|+-...
T Consensus 137 ~i~~~L~~~~~~~gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 198 (566)
T PRK06452 137 ALLHTLFERTSGLNVDFYNEWFSLDLVTDNKKVVGIVAMQMKTLTPFFFKTKAVVLATGGMG 198 (566)
T ss_pred HHHHHHHHHHHhCCCEEEeCcEEEEEEEECCEEEEEEEEECCCCeEEEEEeCeEEECCCccc
Confidence 4566666544 568999999999998766423343322 2343 4678999999997643
No 232
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=53.36 E-value=25 Score=37.44 Aligned_cols=43 Identities=14% Similarity=0.224 Sum_probs=32.3
Q ss_pred HHhccceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCChH
Q 014922 171 KRLGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSY 219 (416)
Q Consensus 171 ~~lg~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~~ 219 (416)
+..+.+++++++|++|+.... +|+ +.+|. ++.||++|+|+-..
T Consensus 65 ~~~gv~~~~g~~V~~Id~~~k---~V~--~~~g~-~~~yD~LVlATGs~ 107 (785)
T TIGR02374 65 EKHGITLYTGETVIQIDTDQK---QVI--TDAGR-TLSYDKLILATGSY 107 (785)
T ss_pred HHCCCEEEcCCeEEEEECCCC---EEE--ECCCc-EeeCCEEEECCCCC
Confidence 344669999999999987643 343 24664 79999999999763
No 233
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=53.32 E-value=23 Score=35.32 Aligned_cols=38 Identities=18% Similarity=0.363 Sum_probs=30.9
Q ss_pred CCCCEEEeeccCCCCc-hhHHHHHHHHHHHHHHHHhhhc
Q 014922 376 GYQGLFLGGNYVAGVA-LGRCVESAYEVASEVSNFLSQY 413 (416)
Q Consensus 376 ~~~~l~~aG~~~~g~~-~~~ai~sg~~aA~~il~~l~~~ 413 (416)
..++||.+||...+.. +..|+..|+.||..|...|...
T Consensus 443 s~~gVfAaGD~~~g~~~~~~Av~~G~~AA~~i~~~L~g~ 481 (485)
T TIGR01317 443 SIPGVFAAGDCRRGQSLIVWAINEGRKAAAAVDRYLMGS 481 (485)
T ss_pred CCCCEEEeeccCCCcHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4689999999876543 3459999999999999988653
No 234
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=53.17 E-value=41 Score=33.12 Aligned_cols=43 Identities=16% Similarity=0.152 Sum_probs=29.6
Q ss_pred cceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCCh
Q 014922 175 SKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPS 218 (416)
Q Consensus 175 ~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~ 218 (416)
.+|+++++|.+|+.+++..++++....++ .++++|.||+++..
T Consensus 224 I~i~~~~~v~~i~~~~~~~v~~~~~~~~~-~~i~~D~vi~a~G~ 266 (460)
T PRK06292 224 FKIKLGAKVTSVEKSGDEKVEELEKGGKT-ETIEADYVLVATGR 266 (460)
T ss_pred cEEEcCCEEEEEEEcCCceEEEEEcCCce-EEEEeCEEEEccCC
Confidence 58999999999987654225553212222 47899999999755
No 235
>PLN02661 Putative thiazole synthesis
Probab=53.11 E-value=16 Score=34.42 Aligned_cols=37 Identities=19% Similarity=0.213 Sum_probs=29.0
Q ss_pred CCCCEEEeec---cCC-----CCchhHHHHHHHHHHHHHHHHhhh
Q 014922 376 GYQGLFLGGN---YVA-----GVALGRCVESAYEVASEVSNFLSQ 412 (416)
Q Consensus 376 ~~~~l~~aG~---~~~-----g~~~~~ai~sg~~aA~~il~~l~~ 412 (416)
-+|+||++|= ..+ |+-.++-+.||++||+.|++.|+.
T Consensus 285 v~pgl~~~gm~~~~~~g~~rmgp~fg~m~~sg~k~a~~~~~~l~~ 329 (357)
T PLN02661 285 VVPGMIVTGMEVAEIDGSPRMGPTFGAMMISGQKAAHLALKALGL 329 (357)
T ss_pred ccCCEEEeccchhhhcCCCccCchhHhHHhhhHHHHHHHHHHHcc
Confidence 4699999993 232 344567999999999999999865
No 236
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=52.94 E-value=45 Score=34.39 Aligned_cols=55 Identities=7% Similarity=0.055 Sum_probs=36.6
Q ss_pred HHHHHHHHHh---ccceecCceeeeEEE-cCCCceEEEE-eCCCCc-eEEecCEEEEcCCh
Q 014922 164 MLPEAISKRL---GSKVKLSWKLSGVKK-LDSGEYSLTY-ETPEGL-VSLRSRSVVMTVPS 218 (416)
Q Consensus 164 ~l~~~L~~~l---g~~I~l~~~V~~I~~-~~~~~v~v~~-~~~~g~-~~~~ad~VI~a~p~ 218 (416)
.+...|.+.+ +.+|..+++|+++.. ++++++.|.. ...+|. ..+.|+.||+|+-.
T Consensus 167 ~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG 227 (617)
T PTZ00139 167 AMLHTLYGQSLKYDCNFFIEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGG 227 (617)
T ss_pred HHHHHHHHHHHhCCCEEEeceEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCCC
Confidence 4556665543 579999999999887 4444222432 233553 46789999999954
No 237
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=52.19 E-value=37 Score=32.47 Aligned_cols=52 Identities=15% Similarity=0.061 Sum_probs=34.7
Q ss_pred HHHHHHHHh---ccceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCChHH
Q 014922 165 LPEAISKRL---GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYV 220 (416)
Q Consensus 165 l~~~L~~~l---g~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~~~ 220 (416)
+.+.|.+.+ +.++ +++.|+.++.++++.+.|++ .+|. +++||.||.|.....
T Consensus 87 l~~~l~~~~~~~gv~~-~~~~v~~i~~~~~~~~~v~~--~~g~-~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 87 LHEELLQKCPEGGVLW-LERKAIHAEADGVALSTVYC--AGGQ-RIQARLVIDARGFGP 141 (388)
T ss_pred HHHHHHHHHHhcCcEE-EccEEEEEEecCCceeEEEe--CCCC-EEEeCEEEECCCCch
Confidence 344444433 4566 46789999877333377763 4663 799999999998864
No 238
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=51.93 E-value=52 Score=29.55 Aligned_cols=55 Identities=11% Similarity=0.099 Sum_probs=35.0
Q ss_pred HHHHHHHHH---hccceecCceeeeEEEcCC-CceEEEEeC----CCC----ceEEecCEEEEcCCh
Q 014922 164 MLPEAISKR---LGSKVKLSWKLSGVKKLDS-GEYSLTYET----PEG----LVSLRSRSVVMTVPS 218 (416)
Q Consensus 164 ~l~~~L~~~---lg~~I~l~~~V~~I~~~~~-~~v~v~~~~----~~g----~~~~~ad~VI~a~p~ 218 (416)
.+...|.+. .|.+|++++.|+.|..+++ +...|.+.. .+| ..+++|+.||.|+-.
T Consensus 105 ~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~ 171 (257)
T PRK04176 105 EAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGH 171 (257)
T ss_pred HHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCC
Confidence 455555554 3679999999999987665 312222210 111 247899999999854
No 239
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=51.68 E-value=34 Score=32.37 Aligned_cols=49 Identities=14% Similarity=0.146 Sum_probs=33.5
Q ss_pred hHHHHHHHHHhccceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCChH
Q 014922 163 TMLPEAISKRLGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSY 219 (416)
Q Consensus 163 ~~l~~~L~~~lg~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~~ 219 (416)
....+...+..+.++++++.|++|+. ++ +.+ .+|. ++.+|.||++++..
T Consensus 194 ~~~~~~~l~~~gV~v~~~~~v~~i~~--~~-v~~----~~g~-~i~~D~vi~a~G~~ 242 (364)
T TIGR03169 194 RRLVLRLLARRGIEVHEGAPVTRGPD--GA-LIL----ADGR-TLPADAILWATGAR 242 (364)
T ss_pred HHHHHHHHHHCCCEEEeCCeeEEEcC--Ce-EEe----CCCC-EEecCEEEEccCCC
Confidence 33344444455779999999999853 22 433 3564 89999999998753
No 240
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=51.58 E-value=23 Score=34.48 Aligned_cols=35 Identities=11% Similarity=0.120 Sum_probs=27.9
Q ss_pred CCCCEEEeeccCCCCchhHHHHHHHHHHHHHHHHh
Q 014922 376 GYQGLFLGGNYVAGVALGRCVESAYEVASEVSNFL 410 (416)
Q Consensus 376 ~~~~l~~aG~~~~g~~~~~ai~sg~~aA~~il~~l 410 (416)
..++|||||+-+...|...|..+|..|+..+...+
T Consensus 329 ~~~~l~~AGqi~g~~Gy~ea~a~G~~Ag~n~~~~~ 363 (436)
T PRK05335 329 KRPNLFFAGQITGVEGYVESAASGLLAGINAARLA 363 (436)
T ss_pred CCCCEEeeeeecCchHHHHHHHHHHHHHHHHHHHh
Confidence 46899999987755677789999999988776654
No 241
>PRK02106 choline dehydrogenase; Validated
Probab=51.56 E-value=21 Score=36.28 Aligned_cols=50 Identities=12% Similarity=0.102 Sum_probs=35.1
Q ss_pred cceecCceeeeEEEcCCCceEEEEeCCCCc-eEEecCEEEEcCChHHHHhc
Q 014922 175 SKVKLSWKLSGVKKLDSGEYSLTYETPEGL-VSLRSRSVVMTVPSYVASSL 224 (416)
Q Consensus 175 ~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~-~~~~ad~VI~a~p~~~~~~l 224 (416)
.+|++++.|++|..++++.+.|++...++. ..+.++.||+|.-.-...+|
T Consensus 216 l~i~~~a~V~rI~~~~~~a~GV~~~~~~~~~~~~~ak~VILaaGai~TP~L 266 (560)
T PRK02106 216 LTIVTHALTDRILFEGKRAVGVEYERGGGRETARARREVILSAGAINSPQL 266 (560)
T ss_pred cEEEcCCEEEEEEEeCCeEEEEEEEeCCcEEEEEeeeeEEEccCCCCCHHH
Confidence 589999999999988654345666444443 24578999999876544444
No 242
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=51.56 E-value=38 Score=32.54 Aligned_cols=55 Identities=7% Similarity=0.079 Sum_probs=34.5
Q ss_pred hhHhHHHHHHHHHhc-cceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCCh
Q 014922 160 KGLTMLPEAISKRLG-SKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPS 218 (416)
Q Consensus 160 gG~~~l~~~L~~~lg-~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~ 218 (416)
.-+........+..+ -+| ....|++|..++++.+.|. +.+|. .+.+|.||+|+-+
T Consensus 95 ~~y~~~~~~~l~~~~nl~i-~~~~V~~l~~e~~~v~GV~--~~~g~-~~~a~~vVlaTGt 150 (392)
T PF01134_consen 95 DKYSRAMREKLESHPNLTI-IQGEVTDLIVENGKVKGVV--TKDGE-EIEADAVVLATGT 150 (392)
T ss_dssp HHHHHHHHHHHHTSTTEEE-EES-EEEEEECTTEEEEEE--ETTSE-EEEECEEEE-TTT
T ss_pred HHHHHHHHHHHhcCCCeEE-EEcccceEEecCCeEEEEE--eCCCC-EEecCEEEEeccc
Confidence 334444433333322 255 4679999999887633454 56785 8999999999977
No 243
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=51.49 E-value=38 Score=32.94 Aligned_cols=43 Identities=9% Similarity=0.153 Sum_probs=31.0
Q ss_pred HHhccceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCChH
Q 014922 171 KRLGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSY 219 (416)
Q Consensus 171 ~~lg~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~~ 219 (416)
+..|.++++++.|++|+.+ +. + +.. .+|. ++.||.||++++..
T Consensus 190 ~~~gV~v~~~~~v~~i~~~-~~-~-v~~--~~g~-~i~~D~vi~a~G~~ 232 (427)
T TIGR03385 190 KKHEINLRLNEEVDSIEGE-ER-V-KVF--TSGG-VYQADMVILATGIK 232 (427)
T ss_pred HHcCCEEEeCCEEEEEecC-CC-E-EEE--cCCC-EEEeCEEEECCCcc
Confidence 3346799999999999764 32 4 332 3564 79999999998764
No 244
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=50.89 E-value=24 Score=34.89 Aligned_cols=36 Identities=25% Similarity=0.421 Sum_probs=29.7
Q ss_pred CCCCEEEeeccCCCCch-hHHHHHHHHHHHHHHHHhh
Q 014922 376 GYQGLFLGGNYVAGVAL-GRCVESAYEVASEVSNFLS 411 (416)
Q Consensus 376 ~~~~l~~aG~~~~g~~~-~~ai~sg~~aA~~il~~l~ 411 (416)
..++||.+||...+... ..|+..|+.||..|...|+
T Consensus 430 ~~~gVfa~GD~~~~~~~~~~Ai~~G~~aA~~i~~~L~ 466 (467)
T TIGR01318 430 TNPKIFAGGDAVRGADLVVTAVAEGRQAAQGILDWLG 466 (467)
T ss_pred CCCCEEEECCcCCCccHHHHHHHHHHHHHHHHHHHhc
Confidence 46899999998765543 5699999999999988774
No 245
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=50.81 E-value=32 Score=33.10 Aligned_cols=41 Identities=7% Similarity=0.053 Sum_probs=30.7
Q ss_pred hccceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCChH
Q 014922 173 LGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSY 219 (416)
Q Consensus 173 lg~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~~ 219 (416)
.+.++++++.|+.|+.++. .|++ .+|. ++.||++|+|+-..
T Consensus 71 ~~i~~~~g~~V~~id~~~~---~v~~--~~g~-~~~yd~LViATGs~ 111 (396)
T PRK09754 71 NNVHLHSGVTIKTLGRDTR---ELVL--TNGE-SWHWDQLFIATGAA 111 (396)
T ss_pred CCCEEEcCCEEEEEECCCC---EEEE--CCCC-EEEcCEEEEccCCC
Confidence 3568999999999988643 3332 3564 79999999998654
No 246
>PRK08275 putative oxidoreductase; Provisional
Probab=50.70 E-value=60 Score=32.94 Aligned_cols=56 Identities=9% Similarity=0.095 Sum_probs=36.6
Q ss_pred HHHHHHHHHh---ccceecCceeeeEEEc-CCCceEEEE-eCCCCc-eEEecCEEEEcCChH
Q 014922 164 MLPEAISKRL---GSKVKLSWKLSGVKKL-DSGEYSLTY-ETPEGL-VSLRSRSVVMTVPSY 219 (416)
Q Consensus 164 ~l~~~L~~~l---g~~I~l~~~V~~I~~~-~~~~v~v~~-~~~~g~-~~~~ad~VI~a~p~~ 219 (416)
.+.+.|.+.+ +.+|..++.|++|..+ +++.+.|.. ...+|+ ..+.|+.||+|+-..
T Consensus 138 ~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~ 199 (554)
T PRK08275 138 DIKKVLYRQLKRARVLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGAA 199 (554)
T ss_pred HHHHHHHHHHHHCCCEEEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCCCc
Confidence 3455555543 5699999999999886 443222332 233553 358899999998663
No 247
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=50.25 E-value=49 Score=34.03 Aligned_cols=55 Identities=7% Similarity=-0.009 Sum_probs=35.9
Q ss_pred HHHHHHHHh---c-cceecCceeeeEEEcCCCceEEEE-eCCCCc-eEEecCEEEEcCChH
Q 014922 165 LPEAISKRL---G-SKVKLSWKLSGVKKLDSGEYSLTY-ETPEGL-VSLRSRSVVMTVPSY 219 (416)
Q Consensus 165 l~~~L~~~l---g-~~I~l~~~V~~I~~~~~~~v~v~~-~~~~g~-~~~~ad~VI~a~p~~ 219 (416)
+.+.|.+.+ + .+|+.++.|++|..++++.+.|.. ...+|. ..+.|+.||+|+-..
T Consensus 134 ~~~~L~~~a~~~ggV~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~ 194 (608)
T PRK06854 134 YKPIVAEAAKKALGDNVLNRVFITDLLVDDNRIAGAVGFSVRENKFYVFKAKAVIVATGGA 194 (608)
T ss_pred HHHHHHHHHHhcCCCEEEeCCEEEEEEEeCCEEEEEEEEEccCCcEEEEECCEEEECCCch
Confidence 445554433 3 799999999999876554222321 223443 368999999999764
No 248
>PLN02815 L-aspartate oxidase
Probab=50.14 E-value=40 Score=34.53 Aligned_cols=56 Identities=11% Similarity=0.036 Sum_probs=36.5
Q ss_pred HHHHHHHHHh----ccceecCceeeeEEEcC-CC---ceEEEE-eCCCCc-eEEecCEEEEcCChH
Q 014922 164 MLPEAISKRL----GSKVKLSWKLSGVKKLD-SG---EYSLTY-ETPEGL-VSLRSRSVVMTVPSY 219 (416)
Q Consensus 164 ~l~~~L~~~l----g~~I~l~~~V~~I~~~~-~~---~v~v~~-~~~~g~-~~~~ad~VI~a~p~~ 219 (416)
.+.++|.+.+ +.+|..+++++++..++ ++ ++.|.. ...+|. ..+.|+.||+|+--.
T Consensus 156 ~i~~~L~~~~~~~~~i~i~~~~~~~~Li~~~~g~~~~v~Gv~~~~~~~g~~~~i~AkaVILATGG~ 221 (594)
T PLN02815 156 EIERALLEAVKNDPNITFFEHHFAIDLLTSQDGGSIVCHGADVLDTRTGEVVRFISKVTLLASGGA 221 (594)
T ss_pred HHHHHHHHHHHhcCCCEEEeceEhheeeeecCCCccEEEEEEEEEcCCCeEEEEEeceEEEcCCcc
Confidence 3556665554 45899999999998754 32 233432 233553 467899999999753
No 249
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=50.13 E-value=25 Score=33.35 Aligned_cols=43 Identities=14% Similarity=0.217 Sum_probs=29.6
Q ss_pred HHHhccceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCChH
Q 014922 170 SKRLGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSY 219 (416)
Q Consensus 170 ~~~lg~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~~ 219 (416)
.+..+.++..+ .|++|+.+++. |.+ .+|. ++.+|++|+|+-..
T Consensus 64 ~~~~gv~~~~~-~v~~id~~~~~-V~~----~~g~-~~~yD~LviAtG~~ 106 (364)
T TIGR03169 64 ARQAGARFVIA-EATGIDPDRRK-VLL----ANRP-PLSYDVLSLDVGST 106 (364)
T ss_pred HHhcCCEEEEE-EEEEEecccCE-EEE----CCCC-cccccEEEEccCCC
Confidence 33445677664 89999887553 433 4564 78999999998653
No 250
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=50.06 E-value=29 Score=29.38 Aligned_cols=44 Identities=18% Similarity=0.323 Sum_probs=31.1
Q ss_pred ccceecCceeeeEEEcCCC----ceEEEE-eCCCCceEEecCEEEEcCCh
Q 014922 174 GSKVKLSWKLSGVKKLDSG----EYSLTY-ETPEGLVSLRSRSVVMTVPS 218 (416)
Q Consensus 174 g~~I~l~~~V~~I~~~~~~----~v~v~~-~~~~g~~~~~ad~VI~a~p~ 218 (416)
+.++++++.|.+|+...+. .+.+.. .+.++ .++.||+||+|+-.
T Consensus 72 ~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~lviAtG~ 120 (201)
T PF07992_consen 72 GVEIRLNAKVVSIDPESKRVVCPAVTIQVVETGDG-REIKYDYLVIATGS 120 (201)
T ss_dssp THEEEHHHTEEEEEESTTEEEETCEEEEEEETTTE-EEEEEEEEEEESTE
T ss_pred eEEEeeccccccccccccccccCcccceeeccCCc-eEecCCeeeecCcc
Confidence 4588899999999887662 123322 23344 58999999999874
No 251
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=50.01 E-value=26 Score=33.87 Aligned_cols=34 Identities=15% Similarity=0.070 Sum_probs=28.9
Q ss_pred CCEEEeeccC------CCCchhHHHHHHHHHHHHHHHHhh
Q 014922 378 QGLFLGGNYV------AGVALGRCVESAYEVASEVSNFLS 411 (416)
Q Consensus 378 ~~l~~aG~~~------~g~~~~~ai~sg~~aA~~il~~l~ 411 (416)
+|+.++||.. .|.|+..|+.||..||+.+.+.+.
T Consensus 270 ~~~llvGDAAg~v~P~tGeGI~~A~~sg~~aa~~i~~~~~ 309 (398)
T TIGR02028 270 GRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEESR 309 (398)
T ss_pred CCEEEEEcCCCCCCcccccchHHHHHHHHHHHHHHHHHHh
Confidence 7899999853 478899999999999999987653
No 252
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=49.25 E-value=43 Score=32.60 Aligned_cols=40 Identities=20% Similarity=0.270 Sum_probs=29.4
Q ss_pred HHhccceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCCh
Q 014922 171 KRLGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPS 218 (416)
Q Consensus 171 ~~lg~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~ 218 (416)
+..|.+|+++++|++|+. ++ +.+ .+|+ +++||.||.++..
T Consensus 239 ~~~gV~v~~~~~v~~v~~--~~-v~~----~~g~-~i~~d~vi~~~G~ 278 (424)
T PTZ00318 239 RRLGVDIRTKTAVKEVLD--KE-VVL----KDGE-VIPTGLVVWSTGV 278 (424)
T ss_pred HHCCCEEEeCCeEEEEeC--CE-EEE----CCCC-EEEccEEEEccCC
Confidence 344679999999999963 32 433 4674 8999999999753
No 253
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=49.15 E-value=18 Score=33.00 Aligned_cols=35 Identities=17% Similarity=0.257 Sum_probs=26.8
Q ss_pred CCCCEEEeeccCC-C-CchhHHHHHHHHHHHHHHHHh
Q 014922 376 GYQGLFLGGNYVA-G-VALGRCVESAYEVASEVSNFL 410 (416)
Q Consensus 376 ~~~~l~~aG~~~~-g-~~~~~ai~sg~~aA~~il~~l 410 (416)
..++||.+||... . .....|+..|+.||..|...+
T Consensus 264 ~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~~ 300 (300)
T TIGR01292 264 SVPGVFAAGDVRDKGYRQAVTAAGDGCIAALSAERYL 300 (300)
T ss_pred CCCCEEEeecccCcchhhhhhhhhhHHHHHHHHHhhC
Confidence 3589999999764 2 234569999999999987653
No 254
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=48.97 E-value=54 Score=31.49 Aligned_cols=61 Identities=10% Similarity=0.006 Sum_probs=38.7
Q ss_pred HHHHHHHHHh---ccceecCceeeeEEE-cCCCceEEEEeCCCCc-eEEecCEEEEcCCh-HHHHhccC
Q 014922 164 MLPEAISKRL---GSKVKLSWKLSGVKK-LDSGEYSLTYETPEGL-VSLRSRSVVMTVPS-YVASSLLR 226 (416)
Q Consensus 164 ~l~~~L~~~l---g~~I~l~~~V~~I~~-~~~~~v~v~~~~~~g~-~~~~ad~VI~a~p~-~~~~~ll~ 226 (416)
.+-+.|.+.+ +.++++++.++++.. ++++ +.|++. .+|+ ++++||.||-|--. ..+++.+.
T Consensus 104 ~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~~-~~V~~~-~~g~~~~i~adlvIGADG~~S~VR~~l~ 170 (390)
T TIGR02360 104 EVTRDLMEAREAAGLTTVYDADDVRLHDLAGDR-PYVTFE-RDGERHRLDCDFIAGCDGFHGVSRASIP 170 (390)
T ss_pred HHHHHHHHHHHhcCCeEEEeeeeEEEEecCCCc-cEEEEE-ECCeEEEEEeCEEEECCCCchhhHHhcC
Confidence 3444454443 568999999888865 4444 677763 2453 36899999988654 44555543
No 255
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=48.82 E-value=29 Score=32.83 Aligned_cols=36 Identities=25% Similarity=0.624 Sum_probs=29.0
Q ss_pred CCCCEEEeeccCCCCc-hhHHHHHHHHHHHHHHHHhh
Q 014922 376 GYQGLFLGGNYVAGVA-LGRCVESAYEVASEVSNFLS 411 (416)
Q Consensus 376 ~~~~l~~aG~~~~g~~-~~~ai~sg~~aA~~il~~l~ 411 (416)
..++||.+||...+.. +..|+..|+.||..|...|.
T Consensus 314 ~~~~vyaiGD~~~~~~~~~~A~~~g~~aa~~i~~~l~ 350 (352)
T PRK12770 314 SREGVFAAGDVVTGPSKIGKAIKSGLRAAQSIHEWLD 350 (352)
T ss_pred CCCCEEEEcccccCcchHHHHHHHHHHHHHHHHHHHh
Confidence 4689999999876443 44599999999999988773
No 256
>PRK10262 thioredoxin reductase; Provisional
Probab=48.72 E-value=50 Score=30.61 Aligned_cols=54 Identities=11% Similarity=0.146 Sum_probs=34.7
Q ss_pred HHHHHHHHh---ccceecCceeeeEEEcCCCceEEEEeCC--CC-ceEEecCEEEEcCCh
Q 014922 165 LPEAISKRL---GSKVKLSWKLSGVKKLDSGEYSLTYETP--EG-LVSLRSRSVVMTVPS 218 (416)
Q Consensus 165 l~~~L~~~l---g~~I~l~~~V~~I~~~~~~~v~v~~~~~--~g-~~~~~ad~VI~a~p~ 218 (416)
+.+.+.+.+ +.++++++.|++|+.++++...|++... ++ .+++.+|.||+++..
T Consensus 187 ~~~~~~~~l~~~gV~i~~~~~v~~v~~~~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~ 246 (321)
T PRK10262 187 LIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGH 246 (321)
T ss_pred HHHHHHhhccCCCeEEEeCCEEEEEEcCCccEEEEEEEEcCCCCeEEEEECCEEEEEeCC
Confidence 445555555 4589999999999876543123444321 12 247899999998765
No 257
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=48.70 E-value=24 Score=34.78 Aligned_cols=37 Identities=24% Similarity=0.513 Sum_probs=30.2
Q ss_pred CCCCEEEeeccCCCC-chhHHHHHHHHHHHHHHHHhhh
Q 014922 376 GYQGLFLGGNYVAGV-ALGRCVESAYEVASEVSNFLSQ 412 (416)
Q Consensus 376 ~~~~l~~aG~~~~g~-~~~~ai~sg~~aA~~il~~l~~ 412 (416)
..++||.+||...+. .+..|+..|+.||..|...+..
T Consensus 416 s~~~VfA~GD~~~~~~~~~~A~~~G~~aA~~I~~~l~g 453 (457)
T PRK11749 416 SLPGVFAGGDIVTGAATVVWAVGDGKDAAEAIHEYLEG 453 (457)
T ss_pred CCCCEEEeCCcCCCchHHHHHHHHHHHHHHHHHHHHhc
Confidence 468999999987653 3456999999999999998864
No 258
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=48.55 E-value=28 Score=33.92 Aligned_cols=40 Identities=15% Similarity=0.169 Sum_probs=28.7
Q ss_pred HhhhcCCCCEEEeeccCCCCchhHHHHHHHHHHHHHHHHh
Q 014922 371 SLRDNGYQGLFLGGNYVAGVALGRCVESAYEVASEVSNFL 410 (416)
Q Consensus 371 ~l~~~~~~~l~~aG~~~~g~~~~~ai~sg~~aA~~il~~l 410 (416)
.++....++|||||.-+...|...|..+|..|+-.+...+
T Consensus 323 ~l~~k~~~~lf~AGQi~G~~GY~Eaaa~Gl~agina~~~~ 362 (433)
T TIGR00137 323 SLHFKDRQTLFFAGQLTGVEGYVASTAGGWLAGINAARLA 362 (433)
T ss_pred HhccCCCCCEEECcccccchHHHHHHHHHHHHHHHHHHHH
Confidence 4443246899999987666778888888888876665544
No 259
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=47.65 E-value=31 Score=33.84 Aligned_cols=41 Identities=12% Similarity=0.215 Sum_probs=30.9
Q ss_pred ceecCceeeeEEEcCCC-ceEEEEeCCCCceE-EecCEEEEcCCh
Q 014922 176 KVKLSWKLSGVKKLDSG-EYSLTYETPEGLVS-LRSRSVVMTVPS 218 (416)
Q Consensus 176 ~I~l~~~V~~I~~~~~~-~v~v~~~~~~g~~~-~~ad~VI~a~p~ 218 (416)
.|++++.|+.+..+.++ .|+|++. +|... ++||.||+|+-.
T Consensus 100 ~i~~~~~v~~~~~~~~~~~w~V~~~--~~~~~~~~a~~vV~ATG~ 142 (443)
T COG2072 100 QIRFNTRVEVADWDEDTKRWTVTTS--DGGTGELTADFVVVATGH 142 (443)
T ss_pred EEEcccceEEEEecCCCCeEEEEEc--CCCeeeEecCEEEEeecC
Confidence 79999999999887653 5999853 33212 669999999876
No 260
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=47.52 E-value=46 Score=33.97 Aligned_cols=55 Identities=5% Similarity=0.003 Sum_probs=36.2
Q ss_pred HHHHHHHHh----ccceecCceeeeEEEcCCCceEEEE-eCCCCc-eEEecCEEEEcCChH
Q 014922 165 LPEAISKRL----GSKVKLSWKLSGVKKLDSGEYSLTY-ETPEGL-VSLRSRSVVMTVPSY 219 (416)
Q Consensus 165 l~~~L~~~l----g~~I~l~~~V~~I~~~~~~~v~v~~-~~~~g~-~~~~ad~VI~a~p~~ 219 (416)
+.++|.+.+ +.+|..++.|++|..++++.+.|.. ...+|. ..+.|+.||+|+-..
T Consensus 139 i~~~L~~~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~ 199 (577)
T PRK06069 139 IMHTLYSRALRFDNIHFYDEHFVTSLIVENGVFKGVTAIDLKRGEFKVFQAKAGIIATGGA 199 (577)
T ss_pred HHHHHHHHHHhcCCCEEEECCEEEEEEEECCEEEEEEEEEcCCCeEEEEECCcEEEcCchh
Confidence 555555543 4589999999999876654222322 233553 367899999998764
No 261
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=45.99 E-value=28 Score=36.91 Aligned_cols=37 Identities=24% Similarity=0.463 Sum_probs=30.6
Q ss_pred CCCCEEEeeccCCCCc-hhHHHHHHHHHHHHHHHHhhh
Q 014922 376 GYQGLFLGGNYVAGVA-LGRCVESAYEVASEVSNFLSQ 412 (416)
Q Consensus 376 ~~~~l~~aG~~~~g~~-~~~ai~sg~~aA~~il~~l~~ 412 (416)
..++||.+||...|.. +-.|+..|+.||..|.+.|..
T Consensus 714 s~~gVfA~GD~~~g~~~vv~Av~~G~~AA~~I~~~L~~ 751 (752)
T PRK12778 714 SIPGIYAGGDIVRGGATVILAMGDGKRAAAAIDEYLSS 751 (752)
T ss_pred CCCCEEEeCCccCCcHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4689999999887653 456999999999999988754
No 262
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=45.74 E-value=77 Score=31.25 Aligned_cols=57 Identities=11% Similarity=0.119 Sum_probs=38.5
Q ss_pred hhhHhHHHHHHHHHhccceecCceeeeEEEcCCCce-EEEEeCCCCceEEecCEEEEcCChH
Q 014922 159 RKGLTMLPEAISKRLGSKVKLSWKLSGVKKLDSGEY-SLTYETPEGLVSLRSRSVVMTVPSY 219 (416)
Q Consensus 159 ~gG~~~l~~~L~~~lg~~I~l~~~V~~I~~~~~~~v-~v~~~~~~g~~~~~ad~VI~a~p~~ 219 (416)
..-+..+....+...|++++.++ |+.|..++++.+ .|+ +.+| ++++||.||=|+-..
T Consensus 153 R~~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~~g~i~~v~--~~~g-~~i~ad~~IDASG~~ 210 (454)
T PF04820_consen 153 RAKFDQFLRRHAEERGVEVIEGT-VVDVELDEDGRITAVR--LDDG-RTIEADFFIDASGRR 210 (454)
T ss_dssp HHHHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEE--ETTS-EEEEESEEEE-SGGG
T ss_pred HHHHHHHHHHHHhcCCCEEEeCE-EEEEEEcCCCCEEEEE--ECCC-CEEEEeEEEECCCcc
Confidence 45577777777777788888774 888888877633 344 4567 489999999887653
No 263
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=45.71 E-value=29 Score=37.75 Aligned_cols=36 Identities=19% Similarity=0.333 Sum_probs=29.9
Q ss_pred CCCCEEEeeccCCCCc-hhHHHHHHHHHHHHHHHHhh
Q 014922 376 GYQGLFLGGNYVAGVA-LGRCVESAYEVASEVSNFLS 411 (416)
Q Consensus 376 ~~~~l~~aG~~~~g~~-~~~ai~sg~~aA~~il~~l~ 411 (416)
..++||.+||...|.. +-.|+..|+.||..|...|.
T Consensus 591 s~pgVFAaGD~~~G~~~vv~Ai~eGr~AA~~I~~~L~ 627 (944)
T PRK12779 591 SIKGVYSGGDAARGGSTAIRAAGDGQAAAKEIVGEIP 627 (944)
T ss_pred CCCCEEEEEcCCCChHHHHHHHHHHHHHHHHHHHHhc
Confidence 4689999999887654 45699999999999988764
No 264
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=45.61 E-value=62 Score=33.46 Aligned_cols=44 Identities=16% Similarity=0.027 Sum_probs=30.5
Q ss_pred cceecCceeeeEEEcCCCceEEEE-eCCCCc-eEEecCEEEEcCCh
Q 014922 175 SKVKLSWKLSGVKKLDSGEYSLTY-ETPEGL-VSLRSRSVVMTVPS 218 (416)
Q Consensus 175 ~~I~l~~~V~~I~~~~~~~v~v~~-~~~~g~-~~~~ad~VI~a~p~ 218 (416)
.+|..++.|++|..+++..+.|.. ...+|. ..+.|++||+|+-.
T Consensus 166 v~i~~~~~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG 211 (626)
T PRK07803 166 IKVFAECTITELLKDGGRIAGAFGYWRESGRFVLFEAPAVVLATGG 211 (626)
T ss_pred eEEEeCCEEEEEEEECCEEEEEEEEECCCCeEEEEEcCeEEECCCc
Confidence 689999999999876554222321 223443 36899999999976
No 265
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=45.59 E-value=56 Score=36.57 Aligned_cols=38 Identities=24% Similarity=0.316 Sum_probs=29.2
Q ss_pred CCCCEEEeeccC---------CCCchhHHHHHHHHHHHHHHHHhhhc
Q 014922 376 GYQGLFLGGNYV---------AGVALGRCVESAYEVASEVSNFLSQY 413 (416)
Q Consensus 376 ~~~~l~~aG~~~---------~g~~~~~ai~sg~~aA~~il~~l~~~ 413 (416)
|+++||-||+.. .|.++..|+.+|+.|++.+...+...
T Consensus 859 pIpGLYAAGe~~gg~~g~~y~gG~sl~~a~~fGriAG~~aa~~~~~~ 905 (1167)
T PTZ00306 859 PILGLFGAGEVTGGVHGGNRLGGNSLLECVVFGKIAGDRAATILQKK 905 (1167)
T ss_pred eeCceEecceeccccccCCCCchhhHHHHHHHHHHHHHHHHHHHhcc
Confidence 789999999642 23345569999999999998877554
No 266
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=45.46 E-value=70 Score=33.14 Aligned_cols=56 Identities=9% Similarity=0.148 Sum_probs=36.9
Q ss_pred HHHHHHHHHh---ccceecCceeeeEEEc-CCCceEEEE-eCCCCc-eEEecCEEEEcCChH
Q 014922 164 MLPEAISKRL---GSKVKLSWKLSGVKKL-DSGEYSLTY-ETPEGL-VSLRSRSVVMTVPSY 219 (416)
Q Consensus 164 ~l~~~L~~~l---g~~I~l~~~V~~I~~~-~~~~v~v~~-~~~~g~-~~~~ad~VI~a~p~~ 219 (416)
.+.++|.+.+ +.+|..++.++++..+ +++++.|.. ...+|+ ..+.|+.||+|+-..
T Consensus 188 ~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~ 249 (635)
T PLN00128 188 AMLHTLYGQAMKHNTQFFVEYFALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATGGY 249 (635)
T ss_pred HHHHHHHHHHHhCCCEEEEeeEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCCC
Confidence 3556665543 5689999999998776 344233432 223453 467899999999663
No 267
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=45.34 E-value=71 Score=32.74 Aligned_cols=56 Identities=14% Similarity=0.147 Sum_probs=37.6
Q ss_pred HHHHHHHHHh---ccceecCceeeeEEEcC-CCceEEEE-eCCCCc-eEEecCEEEEcCChH
Q 014922 164 MLPEAISKRL---GSKVKLSWKLSGVKKLD-SGEYSLTY-ETPEGL-VSLRSRSVVMTVPSY 219 (416)
Q Consensus 164 ~l~~~L~~~l---g~~I~l~~~V~~I~~~~-~~~v~v~~-~~~~g~-~~~~ad~VI~a~p~~ 219 (416)
.|...|.+.. +.+|.+++.|+++..++ ++++.|.. ...+|. ..+.|+.||+|+-..
T Consensus 144 ~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~ 205 (588)
T PRK08958 144 ALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGGA 205 (588)
T ss_pred HHHHHHHHHhhhcCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCc
Confidence 4667776654 46899999999998864 43223332 223453 467899999998664
No 268
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=44.75 E-value=36 Score=37.37 Aligned_cols=38 Identities=24% Similarity=0.404 Sum_probs=31.7
Q ss_pred CCCCEEEeeccCCCCc-hhHHHHHHHHHHHHHHHHhhhc
Q 014922 376 GYQGLFLGGNYVAGVA-LGRCVESAYEVASEVSNFLSQY 413 (416)
Q Consensus 376 ~~~~l~~aG~~~~g~~-~~~ai~sg~~aA~~il~~l~~~ 413 (416)
..++||.+||...|.. +-.|+..|+.||..|...|...
T Consensus 719 s~pgVFAaGDv~~G~~~vv~Ai~~Gr~AA~~I~~~L~~~ 757 (1006)
T PRK12775 719 NLPGVFAGGDIVTGGATVILAMGAGRRAARSIATYLRLG 757 (1006)
T ss_pred CCCCEEEecCcCCCccHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5789999999877654 4569999999999999988654
No 269
>COG4716 Myosin-crossreactive antigen [Function unknown]
Probab=44.13 E-value=1.2e+02 Score=28.84 Aligned_cols=34 Identities=15% Similarity=0.097 Sum_probs=27.9
Q ss_pred ehhhhHhHHHHHHHHHh---ccceecCceeeeEEEcC
Q 014922 157 SFRKGLTMLPEAISKRL---GSKVKLSWKLSGVKKLD 190 (416)
Q Consensus 157 ~~~gG~~~l~~~L~~~l---g~~I~l~~~V~~I~~~~ 190 (416)
..-+-+.+|+..|...| ++++.+++.|+.|+.+.
T Consensus 221 tkyNQYeSlvlPli~yL~~H~Vdf~~~~~Vedi~v~~ 257 (587)
T COG4716 221 TKYNQYESLVLPLITYLKSHGVDFTYDQKVEDIDVDD 257 (587)
T ss_pred cccchHHHHHHHHHHHHHHcCCceEeccEEeeeeecc
Confidence 44456889999999888 46999999999998764
No 270
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=43.76 E-value=34 Score=35.55 Aligned_cols=37 Identities=30% Similarity=0.483 Sum_probs=30.4
Q ss_pred CCCCEEEeeccCCCCc-hhHHHHHHHHHHHHHHHHhhh
Q 014922 376 GYQGLFLGGNYVAGVA-LGRCVESAYEVASEVSNFLSQ 412 (416)
Q Consensus 376 ~~~~l~~aG~~~~g~~-~~~ai~sg~~aA~~il~~l~~ 412 (416)
..++||.+||-..+.. +..|+..|+.||..|...|..
T Consensus 465 s~pgVfA~GDv~~g~~~v~~Ai~~G~~AA~~I~~~L~g 502 (652)
T PRK12814 465 SVAGVFAGGDCVTGADIAINAVEQGKRAAHAIDLFLNG 502 (652)
T ss_pred CCCCEEEcCCcCCCchHHHHHHHHHHHHHHHHHHHHcC
Confidence 4689999999876554 346999999999999988854
No 271
>PLN02546 glutathione reductase
Probab=42.71 E-value=70 Score=32.53 Aligned_cols=44 Identities=18% Similarity=0.126 Sum_probs=30.5
Q ss_pred hccceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCChH
Q 014922 173 LGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSY 219 (416)
Q Consensus 173 lg~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~~ 219 (416)
.|.+|++++.|.+|+..+++.+.|. +.++. ...+|.||+++...
T Consensus 306 ~GV~i~~~~~v~~i~~~~~g~v~v~--~~~g~-~~~~D~Viva~G~~ 349 (558)
T PLN02546 306 RGIEFHTEESPQAIIKSADGSLSLK--TNKGT-VEGFSHVMFATGRK 349 (558)
T ss_pred CCcEEEeCCEEEEEEEcCCCEEEEE--ECCeE-EEecCEEEEeeccc
Confidence 3568999999999987544424443 34552 44589999998653
No 272
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=42.60 E-value=90 Score=32.01 Aligned_cols=56 Identities=11% Similarity=0.160 Sum_probs=37.1
Q ss_pred HHHHHHHHH---hccceecCceeeeEEEcC-CCceEEEE-eCCCCc-eEEecCEEEEcCChH
Q 014922 164 MLPEAISKR---LGSKVKLSWKLSGVKKLD-SGEYSLTY-ETPEGL-VSLRSRSVVMTVPSY 219 (416)
Q Consensus 164 ~l~~~L~~~---lg~~I~l~~~V~~I~~~~-~~~v~v~~-~~~~g~-~~~~ad~VI~a~p~~ 219 (416)
.|...|.+. .+.+|..++.|+++..++ ++.+.|.. ...+|. ..+.++.||+|+-..
T Consensus 149 ~l~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~ 210 (591)
T PRK07057 149 ALLHTLYQQNVAAKTQFFVEWMALDLIRDADGDVLGVTALEMETGDVYILEAKTTLFATGGA 210 (591)
T ss_pred HHHHHHHHHHHhcCCEEEeCcEEEEEEEcCCCeEEEEEEEEcCCCeEEEEECCeEEECCCCc
Confidence 366666554 356899999999998764 43233433 223453 467899999998663
No 273
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=41.25 E-value=71 Score=32.68 Aligned_cols=55 Identities=16% Similarity=0.082 Sum_probs=36.2
Q ss_pred HHHHHHHHHh----ccceecCceeeeEEEcCCCceEEEE-eCCCCc-eEEecCEEEEcCCh
Q 014922 164 MLPEAISKRL----GSKVKLSWKLSGVKKLDSGEYSLTY-ETPEGL-VSLRSRSVVMTVPS 218 (416)
Q Consensus 164 ~l~~~L~~~l----g~~I~l~~~V~~I~~~~~~~v~v~~-~~~~g~-~~~~ad~VI~a~p~ 218 (416)
.|..+|.+.+ +.+|..++.|++|..++++.+.|.. ...+|. ..+.|+.||+|+-.
T Consensus 134 ~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG 194 (582)
T PRK09231 134 HMLHTLFQTSLKYPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGG 194 (582)
T ss_pred HHHHHHHHHhhcCCCcEEEeCeEEEEEEEeCCEEEEEEEEEcCCCcEEEEECCEEEECCCC
Confidence 3555665543 3578999999999887654222221 223453 47899999999865
No 274
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=40.99 E-value=33 Score=35.00 Aligned_cols=40 Identities=18% Similarity=0.220 Sum_probs=28.6
Q ss_pred HhhhcCCCCEEEeeccCCCCchhHHHHHHHHHHHHHHHHh
Q 014922 371 SLRDNGYQGLFLGGNYVAGVALGRCVESAYEVASEVSNFL 410 (416)
Q Consensus 371 ~l~~~~~~~l~~aG~~~~g~~~~~ai~sg~~aA~~il~~l 410 (416)
.++...++||||||+-....|.+.|..+|..|+-.+...+
T Consensus 351 ~le~k~~~gLf~AGqi~Gt~Gy~eAaa~Gl~Ag~naa~~~ 390 (617)
T TIGR00136 351 TLETKLIQGLFFAGQINGTTGYEEAAAQGLMAGINAALKL 390 (617)
T ss_pred hheeCCCCCeEEccccCCcchHHHHHHHHHHHHHHHHHHh
Confidence 4554247999999985555678888888888886665443
No 275
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=40.53 E-value=74 Score=29.47 Aligned_cols=38 Identities=13% Similarity=0.258 Sum_probs=30.5
Q ss_pred CCCCEEEeeccCCCCc--hhHHHHHHHHHHHHHHHHhhhc
Q 014922 376 GYQGLFLGGNYVAGVA--LGRCVESAYEVASEVSNFLSQY 413 (416)
Q Consensus 376 ~~~~l~~aG~~~~g~~--~~~ai~sg~~aA~~il~~l~~~ 413 (416)
.+++||-|||-..... +..|+..|..||..+.+.+.+.
T Consensus 264 svpGifAaGDv~~~~~rqi~ta~~~G~~Aa~~a~~~l~~~ 303 (305)
T COG0492 264 SVPGIFAAGDVADKNGRQIATAAGDGAIAALSAERYLESL 303 (305)
T ss_pred CCCCEEEeEeeccCcccEEeehhhhHHHHHHHHHHHhhhc
Confidence 6899999999776543 5568999999999988887654
No 276
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=40.03 E-value=34 Score=33.80 Aligned_cols=36 Identities=19% Similarity=0.186 Sum_probs=27.7
Q ss_pred CCCCEEEeeccC----C------CCchhHHHHHHHHHHHHHHHHhh
Q 014922 376 GYQGLFLGGNYV----A------GVALGRCVESAYEVASEVSNFLS 411 (416)
Q Consensus 376 ~~~~l~~aG~~~----~------g~~~~~ai~sg~~aA~~il~~l~ 411 (416)
|+++||-||+.. + |.++..|+.+|+.|++.+.....
T Consensus 417 ~I~GLYAaGe~~gg~~~g~~y~~g~~l~~~~~~G~iag~~aa~~~~ 462 (466)
T PRK08274 417 PSPNLFAAGEMMAGNVLGKGYPAGVGLTIGAVFGRIAGEEAARHAQ 462 (466)
T ss_pred CCCCceecccccccccccCCCccccchhhhhhhHHHHHHHHHHHhh
Confidence 789999999542 2 24456699999999999987654
No 277
>PRK10262 thioredoxin reductase; Provisional
Probab=39.88 E-value=73 Score=29.52 Aligned_cols=38 Identities=13% Similarity=0.247 Sum_probs=29.4
Q ss_pred CCCCEEEeeccCCCCc--hhHHHHHHHHHHHHHHHHhhhc
Q 014922 376 GYQGLFLGGNYVAGVA--LGRCVESAYEVASEVSNFLSQY 413 (416)
Q Consensus 376 ~~~~l~~aG~~~~g~~--~~~ai~sg~~aA~~il~~l~~~ 413 (416)
..++||.+||...... +--|+..|..||..|...+...
T Consensus 278 ~~~~VyA~GD~~~~~~~~~~~A~~~g~~Aa~~~~~~l~~~ 317 (321)
T PRK10262 278 SIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAERYLDGL 317 (321)
T ss_pred CCCCEEECeeccCCCcceEEEEehhHHHHHHHHHHHHHhc
Confidence 5799999999875322 3348999999999998888543
No 278
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=39.64 E-value=34 Score=34.92 Aligned_cols=37 Identities=24% Similarity=0.381 Sum_probs=28.4
Q ss_pred CCCCEEEeeccCC----------CCchhHHHHHHHHHHHHHHHHhhh
Q 014922 376 GYQGLFLGGNYVA----------GVALGRCVESAYEVASEVSNFLSQ 412 (416)
Q Consensus 376 ~~~~l~~aG~~~~----------g~~~~~ai~sg~~aA~~il~~l~~ 412 (416)
|+++||-||+... |.++..|+.+|+.|++.+.+....
T Consensus 523 pIpGLYAaG~~~gg~~g~~y~~~G~~lg~a~~fGriAg~~aa~~~~~ 569 (574)
T PRK12842 523 PIAGLYAVGNDRASIMGGNYPGAGITLGPIMTFGYITGRHLAGVAGG 569 (574)
T ss_pred CcCCceecccccccCccCCCCCCcccHHHHHHHHHHHHHHHHhhhcc
Confidence 7899999995321 233566999999999999877654
No 279
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=38.57 E-value=1.2e+02 Score=27.19 Aligned_cols=55 Identities=16% Similarity=0.163 Sum_probs=35.4
Q ss_pred HHHHHHHHH---hccceecCceeeeEEEcCCC--ceEEEEeCC----CC----ceEEecCEEEEcCCh
Q 014922 164 MLPEAISKR---LGSKVKLSWKLSGVKKLDSG--EYSLTYETP----EG----LVSLRSRSVVMTVPS 218 (416)
Q Consensus 164 ~l~~~L~~~---lg~~I~l~~~V~~I~~~~~~--~v~v~~~~~----~g----~~~~~ad~VI~a~p~ 218 (416)
.+.+.|.+. .|.+|+.++.|..|..++++ ...|.++.. .| ..+++|+.||.|+..
T Consensus 101 el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~ 168 (254)
T TIGR00292 101 EFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGH 168 (254)
T ss_pred HHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecC
Confidence 345555443 46799999999999887662 122332110 11 247899999999974
No 280
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=38.51 E-value=58 Score=34.98 Aligned_cols=42 Identities=17% Similarity=0.306 Sum_probs=31.3
Q ss_pred HhccceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCChH
Q 014922 172 RLGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSY 219 (416)
Q Consensus 172 ~lg~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~~ 219 (416)
..+.++++++.|++|+.+.. .|+ +.+|. ++.||++|+|+-..
T Consensus 71 ~~gI~~~~g~~V~~Id~~~~---~V~--~~~G~-~i~yD~LVIATGs~ 112 (847)
T PRK14989 71 KHGIKVLVGERAITINRQEK---VIH--SSAGR-TVFYDKLIMATGSY 112 (847)
T ss_pred hCCCEEEcCCEEEEEeCCCc---EEE--ECCCc-EEECCEEEECCCCC
Confidence 34568999999999987633 343 24664 79999999999753
No 281
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=38.40 E-value=61 Score=31.68 Aligned_cols=57 Identities=25% Similarity=0.253 Sum_probs=40.1
Q ss_pred HHHHHHHhccceecCceeeeEEEcCCCceE-EEEeCCCCceEEecCEEEEcCChHHHHhcc
Q 014922 166 PEAISKRLGSKVKLSWKLSGVKKLDSGEYS-LTYETPEGLVSLRSRSVVMTVPSYVASSLL 225 (416)
Q Consensus 166 ~~~L~~~lg~~I~l~~~V~~I~~~~~~~v~-v~~~~~~g~~~~~ad~VI~a~p~~~~~~ll 225 (416)
++.+.+.-|.++++++.|.+++...+|.+. |. ..+|. ++.||-||+.+...-..+.+
T Consensus 261 ~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~--l~dg~-~l~adlvv~GiG~~p~t~~~ 318 (478)
T KOG1336|consen 261 YEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVK--LKDGK-TLEADLVVVGIGIKPNTSFL 318 (478)
T ss_pred HHHHHHhcCeEEEEecceeecccCCCCcEEEEE--eccCC-EeccCeEEEeeccccccccc
Confidence 333333336799999999999988755333 43 46785 89999999988775544444
No 282
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=38.33 E-value=33 Score=34.88 Aligned_cols=35 Identities=26% Similarity=0.363 Sum_probs=27.1
Q ss_pred CCCCEEEeeccCC----------CCchhHHHHHHHHHHHHHHHHh
Q 014922 376 GYQGLFLGGNYVA----------GVALGRCVESAYEVASEVSNFL 410 (416)
Q Consensus 376 ~~~~l~~aG~~~~----------g~~~~~ai~sg~~aA~~il~~l 410 (416)
|+++||-||+... |.++..|+.+|+.|++.+...+
T Consensus 506 pIpGLYAAG~~~gg~~g~~Y~~~G~~l~~a~~~GriAg~~aa~~~ 550 (557)
T PRK12844 506 VIPGLYATGNCTASVMGRTYPGAGASIGNSFVFGYIAALHAAGAR 550 (557)
T ss_pred CccceeeccccccccccCCCCcCccchHHHHHHHHHHHHHHHhcc
Confidence 7899999995321 3456679999999999987654
No 283
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=37.94 E-value=66 Score=32.31 Aligned_cols=44 Identities=11% Similarity=0.117 Sum_probs=30.6
Q ss_pred ccceecCceeeeEEEcCCCceE-EEEeC-CCC-ceEEecCEEEEcCCh
Q 014922 174 GSKVKLSWKLSGVKKLDSGEYS-LTYET-PEG-LVSLRSRSVVMTVPS 218 (416)
Q Consensus 174 g~~I~l~~~V~~I~~~~~~~v~-v~~~~-~~g-~~~~~ad~VI~a~p~ 218 (416)
|.+|++++.|++|+.++++ +. |++.. .+| .++++||.||+++..
T Consensus 402 gV~i~~~~~v~~i~~~~~~-v~~v~~~~~~~~~~~~i~~D~vi~a~G~ 448 (515)
T TIGR03140 402 NVDILTSAQTTEIVGDGDK-VTGIRYQDRNSGEEKQLDLDGVFVQIGL 448 (515)
T ss_pred CCEEEECCeeEEEEcCCCE-EEEEEEEECCCCcEEEEEcCEEEEEeCC
Confidence 5689999999999876554 43 55432 122 247899999998765
No 284
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=37.53 E-value=50 Score=34.22 Aligned_cols=45 Identities=13% Similarity=0.170 Sum_probs=34.3
Q ss_pred HHHHHhccceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCCh
Q 014922 168 AISKRLGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPS 218 (416)
Q Consensus 168 ~L~~~lg~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~ 218 (416)
-..+..+.+++++.+|+.|+..+. +|+ ++.|. ++.+|.+|+|+-.
T Consensus 67 dwy~~~~i~L~~~~~v~~idr~~k---~V~--t~~g~-~~~YDkLilATGS 111 (793)
T COG1251 67 DWYEENGITLYTGEKVIQIDRANK---VVT--TDAGR-TVSYDKLIIATGS 111 (793)
T ss_pred hhHHHcCcEEEcCCeeEEeccCcc---eEE--ccCCc-EeecceeEEecCc
Confidence 455666779999999999998754 343 46774 8899999988743
No 285
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=36.74 E-value=45 Score=36.59 Aligned_cols=36 Identities=14% Similarity=0.125 Sum_probs=30.7
Q ss_pred CCCEEEeeccCCCCchhHHHHHHHHHHHHHHHHhhh
Q 014922 377 YQGLFLGGNYVAGVALGRCVESAYEVASEVSNFLSQ 412 (416)
Q Consensus 377 ~~~l~~aG~~~~g~~~~~ai~sg~~aA~~il~~l~~ 412 (416)
.++||.|||.....++..|+.+|+.||..++..++.
T Consensus 438 v~gVyaaGD~~g~~~~~~A~~eG~~Aa~~i~~~lg~ 473 (985)
T TIGR01372 438 VQGCILAGAANGLFGLAAALADGAAAGAAAARAAGF 473 (985)
T ss_pred CCCeEEeeccCCccCHHHHHHHHHHHHHHHHHHcCC
Confidence 589999999876667778999999999999887753
No 286
>PRK09077 L-aspartate oxidase; Provisional
Probab=35.95 E-value=83 Score=31.79 Aligned_cols=56 Identities=11% Similarity=0.036 Sum_probs=35.8
Q ss_pred HHHHHHHHHh----ccceecCceeeeEEEcC------CCceEEEEe-CCCCc-eEEecCEEEEcCChH
Q 014922 164 MLPEAISKRL----GSKVKLSWKLSGVKKLD------SGEYSLTYE-TPEGL-VSLRSRSVVMTVPSY 219 (416)
Q Consensus 164 ~l~~~L~~~l----g~~I~l~~~V~~I~~~~------~~~v~v~~~-~~~g~-~~~~ad~VI~a~p~~ 219 (416)
.+...|.+.+ +.+|..++.|..+..++ ++.+.|... ..+|. ..+.++.||+|+-..
T Consensus 139 ~i~~~L~~~~~~~~~I~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~ 206 (536)
T PRK09077 139 AVQTTLVERARNHPNITVLERHNAIDLITSDKLGLPGRRVVGAYVLNRNKERVETIRAKFVVLATGGA 206 (536)
T ss_pred HHHHHHHHHHHhCCCcEEEeeEEeeeeeecccccCCCCEEEEEEEEECCCCcEEEEecCeEEECCCCC
Confidence 3555555543 46899999999987653 332334332 23443 468899999998663
No 287
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=35.67 E-value=1e+02 Score=31.51 Aligned_cols=55 Identities=16% Similarity=0.176 Sum_probs=36.9
Q ss_pred HHHHHHHHHh----ccceecCceeeeEEEcCCCceEEE-EeCCCCc-eEEecCEEEEcCCh
Q 014922 164 MLPEAISKRL----GSKVKLSWKLSGVKKLDSGEYSLT-YETPEGL-VSLRSRSVVMTVPS 218 (416)
Q Consensus 164 ~l~~~L~~~l----g~~I~l~~~V~~I~~~~~~~v~v~-~~~~~g~-~~~~ad~VI~a~p~ 218 (416)
.|.++|.+.+ +.++..++.|++|..++++++.|. +...+|. ..+.|+.||+|+-.
T Consensus 133 ~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG 193 (580)
T TIGR01176 133 HMLHTLFQTSLTYPQIMRYDEWFVTDLLVDDGRVCGLVAIEMAEGRLVTILADAVVLATGG 193 (580)
T ss_pred HHHHHHHHHHHhcCCCEEEeCeEEEEEEeeCCEEEEEEEEEcCCCcEEEEecCEEEEcCCC
Confidence 4666666654 347889999999988766422232 2223553 46889999999866
No 288
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=35.64 E-value=1e+02 Score=30.13 Aligned_cols=37 Identities=11% Similarity=0.191 Sum_probs=27.7
Q ss_pred ccceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCCh
Q 014922 174 GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPS 218 (416)
Q Consensus 174 g~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~ 218 (416)
|.++++++.|++|+. . .|++ .+|+ .+++|.||++++.
T Consensus 203 gI~i~~~~~v~~i~~--~---~v~~--~~g~-~~~~D~vl~a~G~ 239 (438)
T PRK13512 203 EIPYRLNEEIDAING--N---EVTF--KSGK-VEHYDMIIEGVGT 239 (438)
T ss_pred CCEEEECCeEEEEeC--C---EEEE--CCCC-EEEeCEEEECcCC
Confidence 568999999999963 2 3433 3454 7899999999865
No 289
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=35.47 E-value=47 Score=33.97 Aligned_cols=35 Identities=23% Similarity=0.389 Sum_probs=26.7
Q ss_pred CCCCEEEeeccC---C-------CCchhHHHHHHHHHHHHHHHHh
Q 014922 376 GYQGLFLGGNYV---A-------GVALGRCVESAYEVASEVSNFL 410 (416)
Q Consensus 376 ~~~~l~~aG~~~---~-------g~~~~~ai~sg~~aA~~il~~l 410 (416)
|+++||-||+.. . |.++..|+.+|+.|++.+.+..
T Consensus 526 pIpGLYAAGe~~Gg~~g~~Y~g~G~slg~a~~fGriAG~~aa~~~ 570 (584)
T PRK12835 526 VIPGLYAVGNTSASVMGRSYAGAGATIGPAMTFGYVAARHAAAVV 570 (584)
T ss_pred CccceeeeeecccccccCCCCcCccchHHHHHHHHHHHHHHHHhh
Confidence 789999999532 1 2235669999999999987764
No 290
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=35.21 E-value=40 Score=33.79 Aligned_cols=35 Identities=14% Similarity=0.331 Sum_probs=27.1
Q ss_pred CCCCEEEeeccC---------CCCchhHHHHHHHHHHHHHHHHh
Q 014922 376 GYQGLFLGGNYV---------AGVALGRCVESAYEVASEVSNFL 410 (416)
Q Consensus 376 ~~~~l~~aG~~~---------~g~~~~~ai~sg~~aA~~il~~l 410 (416)
|+++||-||+.. .|.++..|+.+|+.|++.+....
T Consensus 460 pI~GLYAaGe~~gg~~g~~~~~G~~l~~~~~~GriAg~~aa~~~ 503 (506)
T PRK06481 460 PITGLYAAGEVTGGLHGENRIGGNSVADIIIFGRQAGTQSAEFA 503 (506)
T ss_pred EeCCeeeceeccccCCCCCCCchhhHHHHHHHHHHHHHHHHHhh
Confidence 789999999642 13345669999999999987654
No 291
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=35.10 E-value=33 Score=33.30 Aligned_cols=29 Identities=24% Similarity=0.396 Sum_probs=21.4
Q ss_pred CCCCEEEeeccC------CCCchhHHHHHHHHHHH
Q 014922 376 GYQGLFLGGNYV------AGVALGRCVESAYEVAS 404 (416)
Q Consensus 376 ~~~~l~~aG~~~------~g~~~~~ai~sg~~aA~ 404 (416)
.+++|||||+-+ .|..+.-|+.||+.|++
T Consensus 374 ~~~gLyf~GEvLDvdG~~GGYNLq~AwsSG~~Ag~ 408 (409)
T PF03486_consen 374 LVPGLYFAGEVLDVDGPCGGYNLQWAWSSGYLAGK 408 (409)
T ss_dssp SSTTEEE-GGGBSEEE-TTTHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEEEEEeccCcCchhHhHHHHHHHHhhC
Confidence 579999999644 24445669999999986
No 292
>PLN02661 Putative thiazole synthesis
Probab=34.86 E-value=1.1e+02 Score=28.96 Aligned_cols=54 Identities=7% Similarity=0.013 Sum_probs=34.0
Q ss_pred HHHHHHHHH----hccceecCceeeeEEEcCCCceEEEEe------CCCC-----ceEEecCEEEEcCC
Q 014922 164 MLPEAISKR----LGSKVKLSWKLSGVKKLDSGEYSLTYE------TPEG-----LVSLRSRSVVMTVP 217 (416)
Q Consensus 164 ~l~~~L~~~----lg~~I~l~~~V~~I~~~~~~~v~v~~~------~~~g-----~~~~~ad~VI~a~p 217 (416)
.+...|.+. -+.+|+.++.|..+..+++++..|.++ ..++ ...++|++||+|+-
T Consensus 173 e~~stLi~ka~~~~gVkI~~~t~V~DLI~~~grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATG 241 (357)
T PLN02661 173 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGDRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCG 241 (357)
T ss_pred HHHHHHHHHHHhcCCCEEEeCeEeeeEEecCCEEEEEEeecchhhhccCCCCccceeEEECCEEEEcCC
Confidence 334455543 346899999999998876653333310 1111 12689999999996
No 293
>PRK07121 hypothetical protein; Validated
Probab=33.55 E-value=46 Score=33.18 Aligned_cols=34 Identities=18% Similarity=0.346 Sum_probs=26.5
Q ss_pred CCCCEEEeeccC---------CCCchhHHHHHHHHHHHHHHHH
Q 014922 376 GYQGLFLGGNYV---------AGVALGRCVESAYEVASEVSNF 409 (416)
Q Consensus 376 ~~~~l~~aG~~~---------~g~~~~~ai~sg~~aA~~il~~ 409 (416)
|+++||-||+.. .|.++..|+.+|+.|++.+...
T Consensus 448 pI~GLYAaG~~~gg~~g~~y~~G~~l~~~~~~GriAg~~aa~~ 490 (492)
T PRK07121 448 PIPGLYAAGRCASGIASNGYVSGLSLADCSFFGRRAGRHAAAR 490 (492)
T ss_pred CcCceEecccccccCCCCCCCCccccchhHHHHHHHHHHHHhh
Confidence 789999999532 2445667999999999988654
No 294
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=33.39 E-value=63 Score=32.71 Aligned_cols=50 Identities=12% Similarity=0.141 Sum_probs=35.1
Q ss_pred cceecCceeeeEEEcCCCceEEEEeCCCC---ceEEecCEEEEcCChHHHHhc
Q 014922 175 SKVKLSWKLSGVKKLDSGEYSLTYETPEG---LVSLRSRSVVMTVPSYVASSL 224 (416)
Q Consensus 175 ~~I~l~~~V~~I~~~~~~~v~v~~~~~~g---~~~~~ad~VI~a~p~~~~~~l 224 (416)
-+|.+++.|++|..++++.+.|++...++ +..+.++.||++.-.-...+|
T Consensus 218 l~v~t~a~v~ri~~~~~r~~gv~~~~~~~~~~~~~~a~~~viL~AGai~Sp~L 270 (542)
T COG2303 218 LTLLTGARVRRILLEGDRAVGVEVEIGDGGTIETAVAAREVVLAAGAINSPKL 270 (542)
T ss_pred eEEecCCEEEEEEEECCeeEEEEEEeCCCCceEEEecCceEEEeccccCCHHH
Confidence 48999999999999988744555543333 234577899988766444444
No 295
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=32.91 E-value=58 Score=32.10 Aligned_cols=33 Identities=15% Similarity=0.354 Sum_probs=28.6
Q ss_pred CCCCEEEeeccCCCCchhH-HHHHHHHHHHHHHH
Q 014922 376 GYQGLFLGGNYVAGVALGR-CVESAYEVASEVSN 408 (416)
Q Consensus 376 ~~~~l~~aG~~~~g~~~~~-ai~sg~~aA~~il~ 408 (416)
..++||-+||.+.+..+.. |...|+.||+.++.
T Consensus 301 nvp~IyA~GDV~~~~~Lah~A~~eg~iaa~~i~g 334 (454)
T COG1249 301 NVPGIYAIGDVIGGPMLAHVAMAEGRIAAENIAG 334 (454)
T ss_pred CCCCEEEeeccCCCcccHhHHHHHHHHHHHHHhC
Confidence 5799999999987766655 99999999999986
No 296
>PRK08401 L-aspartate oxidase; Provisional
Probab=32.65 E-value=1.2e+02 Score=30.00 Aligned_cols=51 Identities=12% Similarity=0.174 Sum_probs=33.5
Q ss_pred HHHHHHHHHh---ccceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCChH
Q 014922 164 MLPEAISKRL---GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSY 219 (416)
Q Consensus 164 ~l~~~L~~~l---g~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~~ 219 (416)
.+.+.|.+.+ +.++..+ .|+.+..++++.+.|.. +|. .+.++.||+|+-..
T Consensus 121 ~i~~~L~~~~~~~gv~i~~~-~v~~l~~~~g~v~Gv~~---~g~-~i~a~~VVLATGG~ 174 (466)
T PRK08401 121 HIIKILYKHARELGVNFIRG-FAEELAIKNGKAYGVFL---DGE-LLKFDATVIATGGF 174 (466)
T ss_pred HHHHHHHHHHHhcCCEEEEe-EeEEEEeeCCEEEEEEE---CCE-EEEeCeEEECCCcC
Confidence 4666666554 4577765 78888766554223432 453 78999999998663
No 297
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=32.61 E-value=40 Score=34.44 Aligned_cols=36 Identities=22% Similarity=0.451 Sum_probs=27.2
Q ss_pred CCCCEEEeeccC----------CCCchhHHHHHHHHHHHHHHHHhh
Q 014922 376 GYQGLFLGGNYV----------AGVALGRCVESAYEVASEVSNFLS 411 (416)
Q Consensus 376 ~~~~l~~aG~~~----------~g~~~~~ai~sg~~aA~~il~~l~ 411 (416)
|+++||-||+.. .|.++..|+.+|+.|++.+...+.
T Consensus 527 pIpGLYAaG~~~gg~~g~~y~~~G~~lg~a~~fGriAg~~aa~~~~ 572 (581)
T PRK06134 527 PIPGLYAAGNDMASVMGGFYPSGGITLGPALTFGYIAGRHIAGASG 572 (581)
T ss_pred CcCcceeccccccccccCCcCCcchhHHHHHHHHHHHHHHHhhcCC
Confidence 799999999522 123455699999999999987653
No 298
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=32.51 E-value=43 Score=33.96 Aligned_cols=33 Identities=24% Similarity=0.471 Sum_probs=24.9
Q ss_pred CCCCEEEeeccCC-------------CCchhHHHHHHHHHHHHHHH
Q 014922 376 GYQGLFLGGNYVA-------------GVALGRCVESAYEVASEVSN 408 (416)
Q Consensus 376 ~~~~l~~aG~~~~-------------g~~~~~ai~sg~~aA~~il~ 408 (416)
|+++||-||+... |.++..|+.+|+.|++.+..
T Consensus 503 pIpGLYAaG~~~g~~~~g~~g~~~~~G~~lg~a~~~GriAg~~aa~ 548 (549)
T PRK12834 503 PLPGLYAAGEAAGFGGGGVHGYNALEGTFLGGCIFSGRAAGRAAAR 548 (549)
T ss_pred EeCCeeeceecccccCCCcCCccccccchHHHHHHHHHHHHHHHhh
Confidence 7899999996531 23345699999999998753
No 299
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=31.89 E-value=33 Score=33.12 Aligned_cols=28 Identities=25% Similarity=0.408 Sum_probs=20.9
Q ss_pred CCCCEEEeeccC------CCCchhHHHHHHHHHH
Q 014922 376 GYQGLFLGGNYV------AGVALGRCVESAYEVA 403 (416)
Q Consensus 376 ~~~~l~~aG~~~------~g~~~~~ai~sg~~aA 403 (416)
.+++|||||+-+ .|..+.-|..||+.|+
T Consensus 366 ~~~gly~~GE~lDv~g~~GGyNlq~a~~sg~~ag 399 (400)
T TIGR00275 366 LVPGLYFAGEVLDVDGDTGGYNLQWAWSSGYLAG 399 (400)
T ss_pred CCCCeEEEEEEEecCCCCCchHHHHHHHHHHHhc
Confidence 469999999533 2444556999999986
No 300
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=31.75 E-value=1.6e+02 Score=30.53 Aligned_cols=50 Identities=12% Similarity=0.097 Sum_probs=35.0
Q ss_pred ceecCceeeeEEEcCC--CceEEEEeCC----CCc-eEEecCEEEEcCCh-HHHHhcc
Q 014922 176 KVKLSWKLSGVKKLDS--GEYSLTYETP----EGL-VSLRSRSVVMTVPS-YVASSLL 225 (416)
Q Consensus 176 ~I~l~~~V~~I~~~~~--~~v~v~~~~~----~g~-~~~~ad~VI~a~p~-~~~~~ll 225 (416)
+++.++.|++++.+++ ..|+|+++.. +|+ ++++||.||-|=-. +.+++.+
T Consensus 159 ~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~~~~g~~~tv~A~~lVGaDGa~S~VR~~l 216 (634)
T PRK08294 159 EPDYGREFVDLEVDEEGEYPVTVTLRRTDGEHEGEEETVRAKYVVGCDGARSRVRKAI 216 (634)
T ss_pred EEEeCcEEEEEEECCCCCCCEEEEEEECCCCCCCceEEEEeCEEEECCCCchHHHHhc
Confidence 6789999999988642 1377776532 342 48999999988755 4555554
No 301
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=31.67 E-value=59 Score=35.48 Aligned_cols=36 Identities=11% Similarity=0.194 Sum_probs=29.2
Q ss_pred CCCCEEEeeccCCCCc-hhHHHHHHHHHHHHHHHHhh
Q 014922 376 GYQGLFLGGNYVAGVA-LGRCVESAYEVASEVSNFLS 411 (416)
Q Consensus 376 ~~~~l~~aG~~~~g~~-~~~ai~sg~~aA~~il~~l~ 411 (416)
..++||.+||...+.. +..|+..|+.||..|+....
T Consensus 806 s~pgVFAaGD~a~Gp~tvv~Ai~qGr~AA~nI~~~~~ 842 (1019)
T PRK09853 806 SLTNVYMIGDVQRGPSTIVAAIADARRAADAILSREG 842 (1019)
T ss_pred CCCCEEEEeccccCchHHHHHHHHHHHHHHHHhhhcC
Confidence 4689999999876543 45699999999999987654
No 302
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=31.09 E-value=56 Score=31.85 Aligned_cols=34 Identities=15% Similarity=0.184 Sum_probs=25.8
Q ss_pred CCCCEEEeeccC----C------CCchhHHHHHHHHHHHHHHHH
Q 014922 376 GYQGLFLGGNYV----A------GVALGRCVESAYEVASEVSNF 409 (416)
Q Consensus 376 ~~~~l~~aG~~~----~------g~~~~~ai~sg~~aA~~il~~ 409 (416)
|+++||-||+.. + |.++..|+.+|+.|++.+.+.
T Consensus 386 ~I~GLYAaG~~~~g~~~g~~y~~G~~~~~a~~~GriAg~~aa~~ 429 (432)
T TIGR02485 386 APDNLFAAGTNMAGNVLGQGYLAGAGLTIAAVFGRIAGRAAARL 429 (432)
T ss_pred CCCCeeecccccccccccCCCccchhhHHHHHHHHHHHHHHHHh
Confidence 789999999532 1 234556999999999988765
No 303
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=31.05 E-value=49 Score=37.04 Aligned_cols=45 Identities=9% Similarity=0.173 Sum_probs=31.5
Q ss_pred ccceecCceeeeEEEcC-----C----CceEEEEeCC---CCc-eEEecCEEEEcCCh
Q 014922 174 GSKVKLSWKLSGVKKLD-----S----GEYSLTYETP---EGL-VSLRSRSVVMTVPS 218 (416)
Q Consensus 174 g~~I~l~~~V~~I~~~~-----~----~~v~v~~~~~---~g~-~~~~ad~VI~a~p~ 218 (416)
+.+|+++++|+++..++ + +.+.|.+... +|+ ..+.|+.||+|+--
T Consensus 561 gv~i~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~~~~~g~~~~i~AkaVILATGG 618 (1167)
T PTZ00306 561 RVTIMTETTVTSLLSESSARPDGVREIRVTGVRYKQASDASGQVMDLLADAVILATGG 618 (1167)
T ss_pred CcEEEECCEEEEEEecCCcccCCCccceEEEEEEEecccCCCcEEEEEeceEEEecCC
Confidence 56999999999999864 1 2223443333 454 46889999999865
No 304
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=30.98 E-value=48 Score=33.68 Aligned_cols=33 Identities=27% Similarity=0.515 Sum_probs=25.0
Q ss_pred CCCCEEEeeccCC----------CCchhHHHHHHHHHHHHHHH
Q 014922 376 GYQGLFLGGNYVA----------GVALGRCVESAYEVASEVSN 408 (416)
Q Consensus 376 ~~~~l~~aG~~~~----------g~~~~~ai~sg~~aA~~il~ 408 (416)
|+++||-||+... |.++..|+.+|+.|++.+..
T Consensus 513 pIpGLYAaG~~~gg~~g~~Y~~~G~~~~~a~~~GriAg~~aa~ 555 (557)
T PRK07843 513 VIEGLYAAGNVSAPVMGHTYAGPGATIGPAMTFGYLAALDIAA 555 (557)
T ss_pred CcCCceeccccccccccCCcCccccchhhHHHHHHHHHHHHhh
Confidence 7899999995431 22345699999999998864
No 305
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=30.80 E-value=1.2e+02 Score=30.45 Aligned_cols=45 Identities=16% Similarity=0.145 Sum_probs=31.0
Q ss_pred ccceecCceeeeEEEcCCCceE-EEEeC-CCCc-eEEecCEEEEcCChH
Q 014922 174 GSKVKLSWKLSGVKKLDSGEYS-LTYET-PEGL-VSLRSRSVVMTVPSY 219 (416)
Q Consensus 174 g~~I~l~~~V~~I~~~~~~~v~-v~~~~-~~g~-~~~~ad~VI~a~p~~ 219 (416)
+.+|++++.|++|+.++++ ++ |++.. .+|. +++.||.|++++...
T Consensus 401 gI~i~~~~~v~~i~~~~g~-v~~v~~~~~~~g~~~~i~~D~v~~~~G~~ 448 (517)
T PRK15317 401 NVTIITNAQTTEVTGDGDK-VTGLTYKDRTTGEEHHLELEGVFVQIGLV 448 (517)
T ss_pred CcEEEECcEEEEEEcCCCc-EEEEEEEECCCCcEEEEEcCEEEEeECCc
Confidence 5689999999999876554 43 44431 2332 468999999987653
No 306
>PRK06116 glutathione reductase; Validated
Probab=30.68 E-value=64 Score=31.67 Aligned_cols=33 Identities=12% Similarity=0.253 Sum_probs=26.3
Q ss_pred CCCCEEEeeccCCCCc-hhHHHHHHHHHHHHHHH
Q 014922 376 GYQGLFLGGNYVAGVA-LGRCVESAYEVASEVSN 408 (416)
Q Consensus 376 ~~~~l~~aG~~~~g~~-~~~ai~sg~~aA~~il~ 408 (416)
..++||.+||...+.. ...|+..|+.||+.|+.
T Consensus 294 s~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g 327 (450)
T PRK06116 294 NVPGIYAVGDVTGRVELTPVAIAAGRRLSERLFN 327 (450)
T ss_pred CCCCEEEEeecCCCcCcHHHHHHHHHHHHHHHhC
Confidence 5789999999875433 34599999999999874
No 307
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=30.58 E-value=1.2e+02 Score=31.50 Aligned_cols=47 Identities=11% Similarity=0.045 Sum_probs=31.1
Q ss_pred hccceecCceeeeEEEcCCC-ceEEEEeC---C--CC-------ceEEecCEEEEcCChH
Q 014922 173 LGSKVKLSWKLSGVKKLDSG-EYSLTYET---P--EG-------LVSLRSRSVVMTVPSY 219 (416)
Q Consensus 173 lg~~I~l~~~V~~I~~~~~~-~v~v~~~~---~--~g-------~~~~~ad~VI~a~p~~ 219 (416)
.|.+|++++.|++|+..+++ .+.|.+.. . ++ .+++++|.||+|+-..
T Consensus 367 ~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~ 426 (659)
T PTZ00153 367 KPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRK 426 (659)
T ss_pred CCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEECcc
Confidence 35689999999999876542 25554321 1 11 1268999999998553
No 308
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=29.92 E-value=1.2e+02 Score=28.79 Aligned_cols=53 Identities=17% Similarity=0.259 Sum_probs=36.5
Q ss_pred hHHHHHHHHHh---ccceecCceeeeEEEcCCCceE---EEEeCCCCceEEecCEEEEcCChH
Q 014922 163 TMLPEAISKRL---GSKVKLSWKLSGVKKLDSGEYS---LTYETPEGLVSLRSRSVVMTVPSY 219 (416)
Q Consensus 163 ~~l~~~L~~~l---g~~I~l~~~V~~I~~~~~~~v~---v~~~~~~g~~~~~ad~VI~a~p~~ 219 (416)
..+.+.+.+.+ |.++++++.|.+|+...+. .. +. ..++. .+.+|.++++++..
T Consensus 178 ~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~~~-~~~~~~~--~~~~~-~~~~d~~~~~~g~~ 236 (415)
T COG0446 178 PEVAEELAELLEKYGVELLLGTKVVGVEGKGNT-LVVERVV--GIDGE-EIKADLVIIGPGER 236 (415)
T ss_pred HHHHHHHHHHHHHCCcEEEeCCceEEEEcccCc-ceeeEEE--EeCCc-EEEeeEEEEeeccc
Confidence 34555555554 4579999999999987664 22 22 23553 78999999998653
No 309
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=29.04 E-value=1.1e+02 Score=30.79 Aligned_cols=42 Identities=12% Similarity=0.280 Sum_probs=25.8
Q ss_pred CceeeeEEEcCCC-ceEEEEeCCCCceEEecCEEEEcCChHHHHhc
Q 014922 180 SWKLSGVKKLDSG-EYSLTYETPEGLVSLRSRSVVMTVPSYVASSL 224 (416)
Q Consensus 180 ~~~V~~I~~~~~~-~v~v~~~~~~g~~~~~ad~VI~a~p~~~~~~l 224 (416)
...|..+...++. .+.|. +.+|. .+.|++||+|+-.-.-.++
T Consensus 120 q~~v~dli~e~~~~v~GV~--t~~G~-~~~a~aVVlTTGTFL~G~I 162 (621)
T COG0445 120 QGEVEDLIVEEGQRVVGVV--TADGP-EFHAKAVVLTTGTFLRGKI 162 (621)
T ss_pred HhhhHHHhhcCCCeEEEEE--eCCCC-eeecCEEEEeecccccceE
Confidence 3455666554442 23343 56775 7889999999876554454
No 310
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=28.93 E-value=1.5e+02 Score=29.73 Aligned_cols=46 Identities=17% Similarity=0.362 Sum_probs=35.3
Q ss_pred ccceecCceeeeEEEcCCCceEEEEeC-CCC-ceEEecCEEEEcCChHH
Q 014922 174 GSKVKLSWKLSGVKKLDSGEYSLTYET-PEG-LVSLRSRSVVMTVPSYV 220 (416)
Q Consensus 174 g~~I~l~~~V~~I~~~~~~~v~v~~~~-~~g-~~~~~ad~VI~a~p~~~ 220 (416)
|.+|...++|+++..+++ .|.|.+.. ..| +.++.|+.||.|+-++.
T Consensus 178 Ga~il~~~~v~~~~re~~-v~gV~~~D~~tg~~~~ira~~VVNAaGpW~ 225 (532)
T COG0578 178 GAEILTYTRVESLRREGG-VWGVEVEDRETGETYEIRARAVVNAAGPWV 225 (532)
T ss_pred ccchhhcceeeeeeecCC-EEEEEEEecCCCcEEEEEcCEEEECCCccH
Confidence 679999999999999887 35666532 223 35789999999998864
No 311
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=28.67 E-value=1.4e+02 Score=29.33 Aligned_cols=47 Identities=6% Similarity=-0.031 Sum_probs=30.1
Q ss_pred HhccceecCceeeeEEEcCCCc--eEEEEeC--------------CCCceEEecCEEEEcCCh
Q 014922 172 RLGSKVKLSWKLSGVKKLDSGE--YSLTYET--------------PEGLVSLRSRSVVMTVPS 218 (416)
Q Consensus 172 ~lg~~I~l~~~V~~I~~~~~~~--v~v~~~~--------------~~g~~~~~ad~VI~a~p~ 218 (416)
..|.+|++++.|.+|..++++. +++.... .+..+++.+|.||+++..
T Consensus 323 ~~GV~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~ 385 (457)
T PRK11749 323 EEGVEFEWLAAPVEILGDEGRVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQ 385 (457)
T ss_pred HCCCEEEecCCcEEEEecCCceEEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECccC
Confidence 3467899999999998665431 3322100 111247899999999865
No 312
>PRK12839 hypothetical protein; Provisional
Probab=28.67 E-value=57 Score=33.30 Aligned_cols=35 Identities=26% Similarity=0.452 Sum_probs=26.8
Q ss_pred CCCCEEEeeccC----------CCCchhHHHHHHHHHHHHHHHHh
Q 014922 376 GYQGLFLGGNYV----------AGVALGRCVESAYEVASEVSNFL 410 (416)
Q Consensus 376 ~~~~l~~aG~~~----------~g~~~~~ai~sg~~aA~~il~~l 410 (416)
|+++||-||+.. .|.++..|+.+|+.|++.+....
T Consensus 524 pIpGLYAAG~~~gg~~g~~Y~~~G~~lg~a~~fGriAg~~aA~~~ 568 (572)
T PRK12839 524 PIDGLYAAGNDQASVMGGHYPSGGINLGPAMTFGYIAGRELAGST 568 (572)
T ss_pred CcCCceeccccccccccCCCCCcccchhHHHHHHHHHHHHHHhcc
Confidence 789999999632 13345669999999999987654
No 313
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=28.54 E-value=76 Score=31.22 Aligned_cols=33 Identities=15% Similarity=0.283 Sum_probs=26.4
Q ss_pred CCCCEEEeeccCCCCc-hhHHHHHHHHHHHHHHH
Q 014922 376 GYQGLFLGGNYVAGVA-LGRCVESAYEVASEVSN 408 (416)
Q Consensus 376 ~~~~l~~aG~~~~g~~-~~~ai~sg~~aA~~il~ 408 (416)
..++||.+||...+.. .+.|+..|+.||+.|+.
T Consensus 294 ~~p~IyAiGD~~~~~~~~~~A~~~g~~aa~~i~~ 327 (450)
T TIGR01421 294 NVPGIYALGDVVGKVELTPVAIAAGRKLSERLFN 327 (450)
T ss_pred CCCCEEEEEecCCCcccHHHHHHHHHHHHHHHhc
Confidence 4689999999875443 44599999999999874
No 314
>PRK11445 putative oxidoreductase; Provisional
Probab=28.14 E-value=73 Score=30.06 Aligned_cols=32 Identities=16% Similarity=0.168 Sum_probs=27.2
Q ss_pred CCEEEeeccC------CCCchhHHHHHHHHHHHHHHHH
Q 014922 378 QGLFLGGNYV------AGVALGRCVESAYEVASEVSNF 409 (416)
Q Consensus 378 ~~l~~aG~~~------~g~~~~~ai~sg~~aA~~il~~ 409 (416)
+|+.+.||.. .|.|+..|+.+|..+|+.|.+.
T Consensus 264 ~~vvlVGDAAg~i~P~tG~Gi~~al~sa~~la~~l~~~ 301 (351)
T PRK11445 264 DNAFLIGEAAGFISPSSLEGISYALDSARILSEVLNKQ 301 (351)
T ss_pred CCEEEEEcccCccCCccCccHHHHHHhHHHHHHHHHhc
Confidence 6899999853 4778889999999999998764
No 315
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=27.88 E-value=77 Score=34.69 Aligned_cols=34 Identities=15% Similarity=0.229 Sum_probs=27.7
Q ss_pred CCCCEEEeeccCCCCc-hhHHHHHHHHHHHHHHHH
Q 014922 376 GYQGLFLGGNYVAGVA-LGRCVESAYEVASEVSNF 409 (416)
Q Consensus 376 ~~~~l~~aG~~~~g~~-~~~ai~sg~~aA~~il~~ 409 (416)
..++||.+||...+.. +..|+..|+.||..|+..
T Consensus 804 s~pgVFAaGD~a~GP~tVv~AIaqGr~AA~nIl~~ 838 (1012)
T TIGR03315 804 NITNVFVIGDANRGPATIVEAIADGRKAANAILSR 838 (1012)
T ss_pred CCCCEEEEeCcCCCccHHHHHHHHHHHHHHHHhcc
Confidence 4689999999875543 556999999999999854
No 316
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=27.84 E-value=58 Score=33.23 Aligned_cols=35 Identities=14% Similarity=0.308 Sum_probs=26.2
Q ss_pred CCCCEEEeeccC----CC------CchhHHHHHHHHHHHHHHHHh
Q 014922 376 GYQGLFLGGNYV----AG------VALGRCVESAYEVASEVSNFL 410 (416)
Q Consensus 376 ~~~~l~~aG~~~----~g------~~~~~ai~sg~~aA~~il~~l 410 (416)
|+++||-||+.. +| .++..|+.+|+.|++.+...+
T Consensus 370 ~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~Gr~Ag~~aa~~~ 414 (577)
T PRK06069 370 WVRGLWAAGEAAAVSVHGANRLGSNSTAECLVWGRIAGEQAAEYA 414 (577)
T ss_pred EeCCeEeccccccccccccccchhhHHHHHHHHHHHHHHHHHHHh
Confidence 589999999753 22 235569999999999887654
No 317
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=27.47 E-value=1.7e+02 Score=28.90 Aligned_cols=45 Identities=7% Similarity=0.016 Sum_probs=30.2
Q ss_pred hccceecCceeeeEEEcCCCceE-EEEe---CC--------CCceEEecCEEEEcCCh
Q 014922 173 LGSKVKLSWKLSGVKKLDSGEYS-LTYE---TP--------EGLVSLRSRSVVMTVPS 218 (416)
Q Consensus 173 lg~~I~l~~~V~~I~~~~~~~v~-v~~~---~~--------~g~~~~~ad~VI~a~p~ 218 (416)
.|.++++++.+++|..++++ ++ |++. .. +..+++.+|.||+++..
T Consensus 342 ~GV~i~~~~~~~~i~~~~g~-v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~ 398 (471)
T PRK12810 342 EGVEREFNVQTKEFEGENGK-VTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGF 398 (471)
T ss_pred cCCeEEeccCceEEEccCCE-EEEEEEEEEEecCCCccccCCceEEEECCEEEECcCc
Confidence 46799999999999755554 43 3321 11 12247999999999863
No 318
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=27.31 E-value=76 Score=31.13 Aligned_cols=37 Identities=14% Similarity=0.109 Sum_probs=28.2
Q ss_pred HhhhcCCCCEEEeeccCCCCch-hHHHHHHHHHHHHHHH
Q 014922 371 SLRDNGYQGLFLGGNYVAGVAL-GRCVESAYEVASEVSN 408 (416)
Q Consensus 371 ~l~~~~~~~l~~aG~~~~g~~~-~~ai~sg~~aA~~il~ 408 (416)
.+++ ..++||.+||...+..+ ..|+..|+.||+.|+.
T Consensus 288 ~~~T-s~~~IyA~GD~~~~~~l~~~A~~~g~~~a~~i~~ 325 (446)
T TIGR01424 288 YSRT-SIPSIYAVGDVTDRINLTPVAIMEATCFANTEFG 325 (446)
T ss_pred CCcc-CCCCEEEeeccCCCccchhHHHHHHHHHHHHHhc
Confidence 3444 57899999998865444 3499999999999874
No 319
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=27.12 E-value=79 Score=30.85 Aligned_cols=35 Identities=17% Similarity=0.331 Sum_probs=27.1
Q ss_pred CCCCEEEeeccCCC-------CchhHHHHHHHHHHHHHHHHh
Q 014922 376 GYQGLFLGGNYVAG-------VALGRCVESAYEVASEVSNFL 410 (416)
Q Consensus 376 ~~~~l~~aG~~~~g-------~~~~~ai~sg~~aA~~il~~l 410 (416)
.++|||.+|+-..| .|-+-|+.||..||++|+...
T Consensus 379 ~~~nl~a~G~vl~g~d~~~~~~g~Gva~~ta~~a~~~~~~~~ 420 (422)
T PRK05329 379 VIENLYAAGAVLGGYDPIREGCGSGVALATALHAAEQIAEEA 420 (422)
T ss_pred eccceEEeeehhcCCchHHhCCCchhHHHHHHHHHHHHHHhh
Confidence 36899999975543 444459999999999998654
No 320
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=26.91 E-value=75 Score=29.41 Aligned_cols=50 Identities=14% Similarity=0.253 Sum_probs=35.1
Q ss_pred HHHHHHHHHh---ccceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCChH
Q 014922 164 MLPEAISKRL---GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSY 219 (416)
Q Consensus 164 ~l~~~L~~~l---g~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~~ 219 (416)
.|.+.+.+.. +.++.. ..|.+++..++ ...|+ +.+| +++|++||+|+-..
T Consensus 62 ~L~~~~~~~a~~~~~~~~~-~~v~~v~~~~~-~F~v~--t~~~--~~~ak~vIiAtG~~ 114 (305)
T COG0492 62 ELMEQMKEQAEKFGVEIVE-DEVEKVELEGG-PFKVK--TDKG--TYEAKAVIIATGAG 114 (305)
T ss_pred HHHHHHHHHHhhcCeEEEE-EEEEEEeecCc-eEEEE--ECCC--eEEEeEEEECcCCc
Confidence 4666666654 445544 77888887664 37776 5677 59999999998764
No 321
>PLN02852 ferredoxin-NADP+ reductase
Probab=26.84 E-value=69 Score=31.93 Aligned_cols=37 Identities=24% Similarity=0.341 Sum_probs=30.3
Q ss_pred CCCCEEEeeccCCCCc--hhHHHHHHHHHHHHHHHHhhh
Q 014922 376 GYQGLFLGGNYVAGVA--LGRCVESAYEVASEVSNFLSQ 412 (416)
Q Consensus 376 ~~~~l~~aG~~~~g~~--~~~ai~sg~~aA~~il~~l~~ 412 (416)
+.++||.+||...|.. +..++..|..+|+.|+.++..
T Consensus 385 ~ipGvyAaGDi~~Gp~gvI~t~~~dA~~ta~~i~~d~~~ 423 (491)
T PLN02852 385 TEPGLYVVGWLKRGPTGIIGTNLTCAEETVASIAEDLEQ 423 (491)
T ss_pred CCCCEEEeeeEecCCCCeeeecHhhHHHHHHHHHHHHHc
Confidence 5689999999887643 556999999999999988754
No 322
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=26.44 E-value=76 Score=32.43 Aligned_cols=36 Identities=31% Similarity=0.431 Sum_probs=26.8
Q ss_pred CCCCEEEeeccCC----------CCchhHHHHHHHHHHHHHHHHhh
Q 014922 376 GYQGLFLGGNYVA----------GVALGRCVESAYEVASEVSNFLS 411 (416)
Q Consensus 376 ~~~~l~~aG~~~~----------g~~~~~ai~sg~~aA~~il~~l~ 411 (416)
|+++||-||+... |..+..|+.+|+.|++.+...+.
T Consensus 528 pIpGLYAaG~~~gg~~g~~y~~~G~~lg~a~~fGriAg~~aa~~~~ 573 (578)
T PRK12843 528 PISGLYACGNDMASIMGGTYPGPGITLGPAIVFAYLAARHAAKRTL 573 (578)
T ss_pred CcCCceeccccccccccCCCCCcccchHHHHHHHHHHHHHHHHhhh
Confidence 7899999994321 22345699999999999887653
No 323
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=26.11 E-value=61 Score=33.01 Aligned_cols=33 Identities=27% Similarity=0.446 Sum_probs=24.9
Q ss_pred CCCCEEEeeccCC----------CCchhHHHHHHHHHHHHHHH
Q 014922 376 GYQGLFLGGNYVA----------GVALGRCVESAYEVASEVSN 408 (416)
Q Consensus 376 ~~~~l~~aG~~~~----------g~~~~~ai~sg~~aA~~il~ 408 (416)
|+++||-||+... |.++..|+.+|+.|++.+..
T Consensus 521 pI~GLYAaG~~~gg~~g~~Y~g~G~~lg~a~~fGriAg~~aa~ 563 (564)
T PRK12845 521 VIDGLYAIGNTAANAFGATYPGAGATIGQGLVYGYIAAQDAAA 563 (564)
T ss_pred CCCCeeEeeeeccccccCCCCCcchhhHHHHHHHHHHHHHHhc
Confidence 7899999995431 23456699999999998753
No 324
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=25.87 E-value=75 Score=32.49 Aligned_cols=35 Identities=20% Similarity=0.218 Sum_probs=26.3
Q ss_pred CCCCEEEeeccC----CC------CchhHHHHHHHHHHHHHHHHh
Q 014922 376 GYQGLFLGGNYV----AG------VALGRCVESAYEVASEVSNFL 410 (416)
Q Consensus 376 ~~~~l~~aG~~~----~g------~~~~~ai~sg~~aA~~il~~l 410 (416)
++++||-||+.. +| .++..|+..|+.|++.+...+
T Consensus 370 ~i~GLyAaGe~~~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa~~~ 414 (582)
T PRK09231 370 RIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRVAGEQAAERA 414 (582)
T ss_pred ccCCEEecccccccccCCCCCcchhHHHHHHHHHHHHHHHHHHhh
Confidence 689999999743 22 235569999999999887654
No 325
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=25.43 E-value=81 Score=32.32 Aligned_cols=56 Identities=14% Similarity=0.074 Sum_probs=34.6
Q ss_pred HHHHHHHHh---c----cceecCceeeeEEEcC-CCceEEEEeC-CCCc-eEEecCEEEEcCChHH
Q 014922 165 LPEAISKRL---G----SKVKLSWKLSGVKKLD-SGEYSLTYET-PEGL-VSLRSRSVVMTVPSYV 220 (416)
Q Consensus 165 l~~~L~~~l---g----~~I~l~~~V~~I~~~~-~~~v~v~~~~-~~g~-~~~~ad~VI~a~p~~~ 220 (416)
+...|.+.+ + .+|..++.++.+..++ +.++.|...+ .+|. ..+.|+.||+|+-...
T Consensus 135 i~~~L~~~~~~~~~~~~i~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 200 (589)
T PRK08641 135 LLYALDEQVRRYEVAGLVTKYEGWEFLGAVLDDEGVCRGIVAQDLFTMEIESFPADAVIMATGGPG 200 (589)
T ss_pred HHHHHHHHHHhhhccCCcEEEeeEEEEEEEECCCCEEEEEEEEECCCCcEEEEECCEEEECCCCCc
Confidence 555555433 2 3588999999988754 4323343322 2343 3578999999996633
No 326
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=25.25 E-value=81 Score=32.05 Aligned_cols=37 Identities=11% Similarity=0.250 Sum_probs=28.5
Q ss_pred CCCCEEEeeccCCC--CchhHHHHHHHHHHHHHHHHhhh
Q 014922 376 GYQGLFLGGNYVAG--VALGRCVESAYEVASEVSNFLSQ 412 (416)
Q Consensus 376 ~~~~l~~aG~~~~g--~~~~~ai~sg~~aA~~il~~l~~ 412 (416)
..++||.+||.... ..+..|+..|+.||..|...+..
T Consensus 272 s~p~IyAaGDv~~~~~~~v~~A~~~G~~Aa~~i~~~l~~ 310 (555)
T TIGR03143 272 NVPGVYAAGDLRPKELRQVVTAVADGAIAATSAERYVKE 310 (555)
T ss_pred CCCCEEEceeccCCCcchheeHHhhHHHHHHHHHHHHHh
Confidence 46899999997532 22456999999999999877744
No 327
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=25.08 E-value=1.3e+02 Score=30.99 Aligned_cols=42 Identities=17% Similarity=0.351 Sum_probs=29.5
Q ss_pred cceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCChHH
Q 014922 175 SKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYV 220 (416)
Q Consensus 175 ~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~~~ 220 (416)
.+| +.+.|++|..++++...|. +.+|. .+.|+.||+|+-...
T Consensus 116 V~I-~q~~V~~Li~e~grV~GV~--t~dG~-~I~Ak~VIlATGTFL 157 (618)
T PRK05192 116 LDL-FQGEVEDLIVENGRVVGVV--TQDGL-EFRAKAVVLTTGTFL 157 (618)
T ss_pred cEE-EEeEEEEEEecCCEEEEEE--ECCCC-EEECCEEEEeeCcch
Confidence 355 5678999887766522354 35674 899999999998643
No 328
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=24.78 E-value=73 Score=31.07 Aligned_cols=36 Identities=11% Similarity=0.228 Sum_probs=29.0
Q ss_pred CCCCEEEeeccCC-CCchhHHHHHHHHHHHHHHHHhh
Q 014922 376 GYQGLFLGGNYVA-GVALGRCVESAYEVASEVSNFLS 411 (416)
Q Consensus 376 ~~~~l~~aG~~~~-g~~~~~ai~sg~~aA~~il~~l~ 411 (416)
.+++||.+||... ..|+..|-..|..+|+.|+..+.
T Consensus 448 ~i~gLy~aGdGAG~argI~~Aaa~Gi~~A~~i~~k~~ 484 (486)
T COG2509 448 SIKGLYPAGDGAGLARGIVSAAADGIKAAEGIARKYG 484 (486)
T ss_pred eecceEEccccccccchhHHHhhhhHHHHHHHHHHhc
Confidence 4789999998653 34678899999999999987654
No 329
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=24.74 E-value=55 Score=31.79 Aligned_cols=32 Identities=22% Similarity=0.365 Sum_probs=24.7
Q ss_pred CCCCEEEeeccCC-------CCchhHHHHHHHHHHHHHH
Q 014922 376 GYQGLFLGGNYVA-------GVALGRCVESAYEVASEVS 407 (416)
Q Consensus 376 ~~~~l~~aG~~~~-------g~~~~~ai~sg~~aA~~il 407 (416)
.++|||.+|.-.. |.|.+-|+.+|..||++|+
T Consensus 381 ~~~Nl~a~G~vL~G~d~~~~gcG~GVai~Ta~~aa~~i~ 419 (419)
T TIGR03378 381 TIENLYAIGAVLGGYDPIFEGCGSGVAVSTALHAAEQII 419 (419)
T ss_pred ccccceEechhhcCCChHhcCCCchhHHHHHHHHHHhhC
Confidence 4789999996443 4555569999999999874
No 330
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=24.21 E-value=2.8e+02 Score=28.69 Aligned_cols=46 Identities=2% Similarity=-0.119 Sum_probs=31.7
Q ss_pred ccceecCceeeeEEEcC---CCceEEEE-eCCCCc-eEEecCEEEEcCChH
Q 014922 174 GSKVKLSWKLSGVKKLD---SGEYSLTY-ETPEGL-VSLRSRSVVMTVPSY 219 (416)
Q Consensus 174 g~~I~l~~~V~~I~~~~---~~~v~v~~-~~~~g~-~~~~ad~VI~a~p~~ 219 (416)
+.+|..++.|+++..++ ++++.|.. ...+|. ..+.|+.||+|+-..
T Consensus 140 ~~~i~~~~~v~~Ll~d~~~~GrV~Gv~~~~~~~g~~~~i~AkaVVLATGG~ 190 (614)
T TIGR02061 140 LGDIFERIFIVKLLLDKNTPNRIAGAVGFNVRANEVHVFKAKTVIVAAGGA 190 (614)
T ss_pred CCeEEcccEEEEEEecCCCCCeEEEEEEEEeCCCcEEEEECCEEEECCCcc
Confidence 35899999999999864 33333432 223443 467899999999774
No 331
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=23.75 E-value=7.9e+02 Score=25.04 Aligned_cols=135 Identities=11% Similarity=0.141 Sum_probs=62.0
Q ss_pred ccceecCceeeeEEEcCCCc---eEEEEeCCCCceEEecCEEEEcCCh-H-HHHhccCCCCHHHHhhhcCCCCCCEEEEE
Q 014922 174 GSKVKLSWKLSGVKKLDSGE---YSLTYETPEGLVSLRSRSVVMTVPS-Y-VASSLLRPLSVDAAGALSQFYYPPVAAVS 248 (416)
Q Consensus 174 g~~I~l~~~V~~I~~~~~~~---v~v~~~~~~g~~~~~ad~VI~a~p~-~-~~~~ll~~~~~~~~~~l~~~~~~~~~~v~ 248 (416)
|..+-=-.+|.++..++++. +.+.-.-.+.+-.+.|..||-|+-| . .++++-.+..+ .+ -.+..-|+
T Consensus 238 GA~v~Nh~ev~~Llkd~~~kv~Ga~~rD~iTG~e~~I~Ak~VVNATGpfsDsIr~Mdd~~~~-------~i-~~pSsGvH 309 (680)
T KOG0042|consen 238 GATVLNHVEVVSLLKDKDGKVIGARARDHITGKEYEIRAKVVVNATGPFSDSIRKMDDEDAK-------PI-CVPSSGVH 309 (680)
T ss_pred chhhhhHHHHHHHhhCCCCceeeeEEEEeecCcEEEEEEEEEEeCCCCccHHHHhhcccccC-------ce-eccCCcee
Confidence 44444444677777665541 2232111122346788888888744 2 23333222111 11 11233345
Q ss_pred EEecCCccccccccCCCCCcceEEecCCCCCceEEEEccCCCCCCCCCCCcEEEEEEecCCCCCCCCCCCHHHHHHHHHH
Q 014922 249 VSYPKEAIRTECLIDGELKGFGQLHPRSQGVETLGTIYSSSLFPNRAPAGRVLLLNYIGGATNLGILSKKESELVEAVDR 328 (416)
Q Consensus 249 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~~p~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (416)
+.+.+-.. ....|++.|...+..+. +|.. |.+ . .+.....-+........+-|+-++.+++
T Consensus 310 IVlP~yY~---------P~~mGlldP~TsDgRVi--FflP--Wqg-----~-TIaGTTD~pt~v~~~P~PtE~dIqfIL~ 370 (680)
T KOG0042|consen 310 IVLPGYYC---------PENMGLLDPKTSDGRVI--FFLP--WQG-----K-TIAGTTDIPTSVTHSPTPTEDDIQFILK 370 (680)
T ss_pred EEcccccC---------CcccccccCCCCCCcEE--EEec--cCC-----c-eeeccCCCCCCCCCCCCCCHHHHHHHHH
Confidence 55554221 12357777765444331 2212 332 1 1211111111122233444666889999
Q ss_pred HHHHHhC
Q 014922 329 DLRKMLI 335 (416)
Q Consensus 329 ~l~~~~~ 335 (416)
+++.++-
T Consensus 371 ev~~yl~ 377 (680)
T KOG0042|consen 371 EVQHYLS 377 (680)
T ss_pred HHHHhhC
Confidence 9999874
No 332
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=23.70 E-value=3e+02 Score=26.66 Aligned_cols=59 Identities=19% Similarity=0.249 Sum_probs=38.6
Q ss_pred ehhhhHhHHHHHHHHHhccceecCceeeeEEEcCC-CceEEEEeCCCCceEEecCEEEEcCC
Q 014922 157 SFRKGLTMLPEAISKRLGSKVKLSWKLSGVKKLDS-GEYSLTYETPEGLVSLRSRSVVMTVP 217 (416)
Q Consensus 157 ~~~gG~~~l~~~L~~~lg~~I~l~~~V~~I~~~~~-~~v~v~~~~~~g~~~~~ad~VI~a~p 217 (416)
.++-=+.....=.+..+ ..+++|++|+.|...+. ..++..+.+.++. .++|..+|+++-
T Consensus 95 i~R~Ey~dY~~Waa~~l-~~~rfg~~V~~i~~~~~d~~~~~~~~t~~~~-~y~ar~lVlg~G 154 (436)
T COG3486 95 IPRREYNDYCQWAASQL-PSLRFGEEVTDISSLDGDAVVRLFVVTANGT-VYRARNLVLGVG 154 (436)
T ss_pred ccHHHHHHHHHHHHhhC-CccccCCeeccccccCCcceeEEEEEcCCCc-EEEeeeEEEccC
Confidence 34444666666666666 68999999997743322 2244223466775 899999998874
No 333
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=23.54 E-value=1.1e+02 Score=31.31 Aligned_cols=35 Identities=20% Similarity=0.446 Sum_probs=26.4
Q ss_pred CCCCEEEeeccC----CC------CchhHHHHHHHHHHHHHHHHh
Q 014922 376 GYQGLFLGGNYV----AG------VALGRCVESAYEVASEVSNFL 410 (416)
Q Consensus 376 ~~~~l~~aG~~~----~g------~~~~~ai~sg~~aA~~il~~l 410 (416)
++++||-||+.. +| .++..|+.+|+.|++.+....
T Consensus 369 ~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~~~ 413 (575)
T PRK05945 369 LVEGFFAAGECACVSVHGANRLGSNSLLECVVYGRRTGAAIAEYV 413 (575)
T ss_pred ccCCeEeeeccccccccccccccchhHHHHHHHHHHHHHHHHHHh
Confidence 589999999743 22 345669999999999887654
No 334
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=23.53 E-value=1.7e+02 Score=29.78 Aligned_cols=49 Identities=16% Similarity=0.242 Sum_probs=32.3
Q ss_pred HHHHHHHHH---hccceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCCh
Q 014922 164 MLPEAISKR---LGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPS 218 (416)
Q Consensus 164 ~l~~~L~~~---lg~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~ 218 (416)
.+.+.+.+. ++.++ +++.|++|+.+++. +.|. +.+| .+.+|+||+|+-.
T Consensus 61 ~l~~~l~~~~~~~gv~~-~~~~V~~i~~~~~~-~~V~--~~~g--~~~a~~lVlATGa 112 (555)
T TIGR03143 61 ELMQEMRQQAQDFGVKF-LQAEVLDVDFDGDI-KTIK--TARG--DYKTLAVLIATGA 112 (555)
T ss_pred HHHHHHHHHHHHcCCEE-eccEEEEEEecCCE-EEEE--ecCC--EEEEeEEEECCCC
Confidence 345555443 34566 47889999876553 5665 3455 5789999999854
No 335
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=23.27 E-value=63 Score=32.45 Aligned_cols=33 Identities=21% Similarity=0.361 Sum_probs=25.0
Q ss_pred CCCCEEEeeccC---C-------CCchhHHHHHHHHHHHHHHH
Q 014922 376 GYQGLFLGGNYV---A-------GVALGRCVESAYEVASEVSN 408 (416)
Q Consensus 376 ~~~~l~~aG~~~---~-------g~~~~~ai~sg~~aA~~il~ 408 (416)
|+++||-||+.. . |.++..|+.+|+.|++.+..
T Consensus 468 pIpGLYAaG~~~gg~~g~~Y~~~G~~~~~a~~fGriAg~~aa~ 510 (513)
T PRK12837 468 PIPGLYAAGNTMAAVSGTTYPGGGNPIGASMLFSHLAALDMAG 510 (513)
T ss_pred EeCCceecccccccccccCCCCCccchHHHHHHHHHHHHHHhc
Confidence 789999999632 1 23356799999999998753
No 336
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=23.21 E-value=85 Score=31.96 Aligned_cols=35 Identities=17% Similarity=0.185 Sum_probs=26.4
Q ss_pred CCCCEEEeeccC----CC------CchhHHHHHHHHHHHHHHHHh
Q 014922 376 GYQGLFLGGNYV----AG------VALGRCVESAYEVASEVSNFL 410 (416)
Q Consensus 376 ~~~~l~~aG~~~----~g------~~~~~ai~sg~~aA~~il~~l 410 (416)
++++||-||+.. +| .++..|+.+|+.|++.+....
T Consensus 352 ~IpGLyAaGE~a~~g~hGanrlggnsl~~a~vfGr~Ag~~aa~~~ 396 (565)
T TIGR01816 352 IVPGLYAAGEAACVSVHGANRLGTNSLLDLVVFGRAAGLSAAEYA 396 (565)
T ss_pred ccCCeeecccccccCCCccccchhhHHHHHHHHHHHHHHHHHHhh
Confidence 689999999753 22 235569999999999887654
No 337
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=23.02 E-value=2.2e+02 Score=29.35 Aligned_cols=44 Identities=14% Similarity=0.287 Sum_probs=29.0
Q ss_pred ceecCceeeeEEEc-CCCceEEEEeCCCCceEEecCEEEEcCChHHHHh
Q 014922 176 KVKLSWKLSGVKKL-DSGEYSLTYETPEGLVSLRSRSVVMTVPSYVASS 223 (416)
Q Consensus 176 ~I~l~~~V~~I~~~-~~~~v~v~~~~~~g~~~~~ad~VI~a~p~~~~~~ 223 (416)
.+. ...|+.+..+ +++.+.|. +.+|. .+.||.||+|+-...-..
T Consensus 113 ~Il-e~~Vv~li~e~~g~V~GV~--t~~G~-~I~Ad~VILATGtfL~g~ 157 (617)
T TIGR00136 113 SLF-QGEVEDLILEDNDEIKGVV--TQDGL-KFRAKAVIITTGTFLRGK 157 (617)
T ss_pred EEE-EeEEEEEEEecCCcEEEEE--ECCCC-EEECCEEEEccCcccCCC
Confidence 554 5577777665 44423454 35664 799999999998875433
No 338
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=22.84 E-value=95 Score=31.86 Aligned_cols=36 Identities=14% Similarity=0.268 Sum_probs=24.2
Q ss_pred HhhhcCCCCEEEeeccCCCCchhHHHHHHHHHHHHH
Q 014922 371 SLRDNGYQGLFLGGNYVAGVALGRCVESAYEVASEV 406 (416)
Q Consensus 371 ~l~~~~~~~l~~aG~~~~g~~~~~ai~sg~~aA~~i 406 (416)
.|+...+++|||||.-....|.+.|...|..|.-..
T Consensus 353 ~Le~k~~~~lf~AGQinGt~GYeEaaaqGl~AgiNa 388 (618)
T PRK05192 353 TLETKKIKGLFFAGQINGTTGYEEAAAQGLIAGINA 388 (618)
T ss_pred hheecCCCCeEECcccCCChHHHHHHHHHHHHHHHH
Confidence 455435799999997665567777666666655443
No 339
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=22.67 E-value=98 Score=31.50 Aligned_cols=35 Identities=20% Similarity=0.236 Sum_probs=26.6
Q ss_pred CCCCEEEeeccC----CC------CchhHHHHHHHHHHHHHHHHh
Q 014922 376 GYQGLFLGGNYV----AG------VALGRCVESAYEVASEVSNFL 410 (416)
Q Consensus 376 ~~~~l~~aG~~~----~g------~~~~~ai~sg~~aA~~il~~l 410 (416)
++++||-||+.. +| .++..|+.+|+.|++.+...+
T Consensus 358 ~I~GLyAaGe~a~~g~hGa~rl~g~sl~~a~v~G~~Ag~~aa~~~ 402 (566)
T TIGR01812 358 IVKGLFAAGECACVSVHGANRLGGNSLLELVVFGRIAGEAAAEYA 402 (566)
T ss_pred ccCCeeecccccccCcCcccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 689999999743 22 345569999999999887654
No 340
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=22.24 E-value=1.9e+02 Score=29.35 Aligned_cols=46 Identities=17% Similarity=0.231 Sum_probs=30.2
Q ss_pred ccceecCceeeeEEEcCCCceEEEE---eC----C-------CC-ceEEecCEEEEcCChH
Q 014922 174 GSKVKLSWKLSGVKKLDSGEYSLTY---ET----P-------EG-LVSLRSRSVVMTVPSY 219 (416)
Q Consensus 174 g~~I~l~~~V~~I~~~~~~~v~v~~---~~----~-------~g-~~~~~ad~VI~a~p~~ 219 (416)
|.+|++++.+.+|..++++.+.|++ .. . .| +.++++|.||+++...
T Consensus 319 GVki~~~~~~~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A~G~~ 379 (564)
T PRK12771 319 GVEINWLRTPVEIEGDENGATGLRVITVEKMELDEDGRPSPVTGEEETLEADLVVLAIGQD 379 (564)
T ss_pred CCEEEecCCcEEEEcCCCCEEEEEEEEEEecccCCCCCeeecCCceEEEECCEEEECcCCC
Confidence 5689999999999876554222221 10 1 12 2478999999998753
No 341
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=22.18 E-value=1.1e+02 Score=30.84 Aligned_cols=35 Identities=20% Similarity=0.187 Sum_probs=26.4
Q ss_pred CCCCEEEeeccCC---------CCchhHHHHHHHHHHHHHHHHh
Q 014922 376 GYQGLFLGGNYVA---------GVALGRCVESAYEVASEVSNFL 410 (416)
Q Consensus 376 ~~~~l~~aG~~~~---------g~~~~~ai~sg~~aA~~il~~l 410 (416)
++++||-||+... |.++..|+.+|+.|++.+...+
T Consensus 360 ~IpGLyAaGE~~gg~hG~~rlgG~sl~~a~v~Gr~Ag~~aa~~~ 403 (543)
T PRK06263 360 NIPGLFACGEVAGGVHGANRLGGNALADTQVFGAIAGKSAAKNA 403 (543)
T ss_pred cCCCeEeccccccCCCCCCccchhhhhhhHHHHHHHHHHHHHHh
Confidence 7899999997432 2234569999999999987654
No 342
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=21.79 E-value=1.1e+02 Score=30.36 Aligned_cols=37 Identities=11% Similarity=0.095 Sum_probs=28.2
Q ss_pred HhhhcCCCCEEEeeccCCCCc-hhHHHHHHHHHHHHHHH
Q 014922 371 SLRDNGYQGLFLGGNYVAGVA-LGRCVESAYEVASEVSN 408 (416)
Q Consensus 371 ~l~~~~~~~l~~aG~~~~g~~-~~~ai~sg~~aA~~il~ 408 (416)
.+++ ..++||.+||...+.. .+-|+..|+.||+.|+.
T Consensus 313 ~l~T-s~~~IyA~GDv~~~~~l~~~A~~qG~~aa~ni~g 350 (486)
T TIGR01423 313 FSRT-NVPNIYAIGDVTDRVMLTPVAINEGAAFVDTVFG 350 (486)
T ss_pred CCcC-CCCCEEEeeecCCCcccHHHHHHHHHHHHHHHhC
Confidence 3444 5789999999876443 34499999999999874
No 343
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=21.73 E-value=1.9e+02 Score=20.55 Aligned_cols=24 Identities=21% Similarity=0.376 Sum_probs=17.1
Q ss_pred ceeeeEEEcCCCceEEEEeCCCCc
Q 014922 181 WKLSGVKKLDSGEYSLTYETPEGL 204 (416)
Q Consensus 181 ~~V~~I~~~~~~~v~v~~~~~~g~ 204 (416)
..|++|+.+++++|.|.....+|.
T Consensus 43 ~~v~~ve~~~~g~yev~~~~~dG~ 66 (83)
T PF13670_consen 43 YQVREVEFDDDGCYEVEARDKDGK 66 (83)
T ss_pred CceEEEEEcCCCEEEEEEEECCCC
Confidence 378899995565588875566774
No 344
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=21.65 E-value=1.5e+02 Score=28.94 Aligned_cols=37 Identities=19% Similarity=0.136 Sum_probs=28.0
Q ss_pred CCCCEEEeeccCCC--C----chhHHHHHHHHHHHHHHHHhhh
Q 014922 376 GYQGLFLGGNYVAG--V----ALGRCVESAYEVASEVSNFLSQ 412 (416)
Q Consensus 376 ~~~~l~~aG~~~~g--~----~~~~ai~sg~~aA~~il~~l~~ 412 (416)
.+++||.+||.... . ....|+.+|..+|+.|...+..
T Consensus 307 ~~~~IfAiGD~a~~~~~~~~~~~~~A~~qg~~~A~ni~~~l~g 349 (424)
T PTZ00318 307 PIPNVFALGDCAANEERPLPTLAQVASQQGVYLAKEFNNELKG 349 (424)
T ss_pred CCCCEEEEeccccCCCCCCCCchHHHHHHHHHHHHHHHHHhcC
Confidence 46899999996642 1 1234899999999999988753
No 345
>PRK06370 mercuric reductase; Validated
Probab=21.44 E-value=1e+02 Score=30.35 Aligned_cols=37 Identities=22% Similarity=0.303 Sum_probs=27.9
Q ss_pred HhhhcCCCCEEEeeccCCCCch-hHHHHHHHHHHHHHHH
Q 014922 371 SLRDNGYQGLFLGGNYVAGVAL-GRCVESAYEVASEVSN 408 (416)
Q Consensus 371 ~l~~~~~~~l~~aG~~~~g~~~-~~ai~sg~~aA~~il~ 408 (416)
.+++ ..++||.+||...+... ..|...|+.||+.|+.
T Consensus 296 ~l~t-~~~~IyAiGD~~~~~~~~~~A~~~g~~aa~ni~~ 333 (463)
T PRK06370 296 QLRT-TNPGIYAAGDCNGRGAFTHTAYNDARIVAANLLD 333 (463)
T ss_pred CCcC-CCCCEEEeeecCCCcccHHHHHHHHHHHHHHHhC
Confidence 3444 57899999998754333 3499999999999874
No 346
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=21.42 E-value=2.9e+02 Score=28.35 Aligned_cols=35 Identities=14% Similarity=0.268 Sum_probs=26.0
Q ss_pred CCCCEEEeeccC---C------CCchhHHHHHHHHHHHHHHHHh
Q 014922 376 GYQGLFLGGNYV---A------GVALGRCVESAYEVASEVSNFL 410 (416)
Q Consensus 376 ~~~~l~~aG~~~---~------g~~~~~ai~sg~~aA~~il~~l 410 (416)
++++||-||+.. + |.++..|+..|+.|++.+...+
T Consensus 367 ~I~GLyAaGE~~~g~hGanrlggnsl~~~lv~Gr~Ag~~aa~~~ 410 (589)
T PRK08641 367 NIPGLFAAGECDYSYHGANRLGANSLLSAIYGGMVAGPNAVEYI 410 (589)
T ss_pred ECCCEEECcccccCCCCCCccchhhHHHHHHHHHHHHHHHHHHH
Confidence 689999999743 2 2335569999999998877654
No 347
>PLN02507 glutathione reductase
Probab=21.39 E-value=1.1e+02 Score=30.60 Aligned_cols=37 Identities=11% Similarity=0.049 Sum_probs=28.0
Q ss_pred HhhhcCCCCEEEeeccCCCCc-hhHHHHHHHHHHHHHHH
Q 014922 371 SLRDNGYQGLFLGGNYVAGVA-LGRCVESAYEVASEVSN 408 (416)
Q Consensus 371 ~l~~~~~~~l~~aG~~~~g~~-~~~ai~sg~~aA~~il~ 408 (416)
.+++ ..++||.+||...+.. .+.|...|+.||+.|+.
T Consensus 325 ~~~T-s~p~IyAiGDv~~~~~l~~~A~~qg~~aa~ni~g 362 (499)
T PLN02507 325 YSRT-NIPSIWAIGDVTNRINLTPVALMEGTCFAKTVFG 362 (499)
T ss_pred CCcC-CCCCEEEeeEcCCCCccHHHHHHHHHHHHHHHcC
Confidence 3444 5789999999876443 34599999999999864
No 348
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=21.16 E-value=2e+02 Score=28.36 Aligned_cols=50 Identities=16% Similarity=0.422 Sum_probs=37.3
Q ss_pred HHHHHHHHHh---ccceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCChH
Q 014922 164 MLPEAISKRL---GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSY 219 (416)
Q Consensus 164 ~l~~~L~~~l---g~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~~ 219 (416)
.++..|++.+ |++|+.+++|++|+. +++ +.|+ +.+| ++.||+||+|+...
T Consensus 184 ~l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~~~-~~v~--t~~g--~v~A~~VV~Atga~ 236 (460)
T TIGR03329 184 LLVRGLRRVALELGVEIHENTPMTGLEE-GQP-AVVR--TPDG--QVTADKVVLALNAW 236 (460)
T ss_pred HHHHHHHHHHHHcCCEEECCCeEEEEee-CCc-eEEE--eCCc--EEECCEEEEccccc
Confidence 4566665543 689999999999985 333 6665 5677 68999999998764
No 349
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=21.00 E-value=1.1e+02 Score=32.02 Aligned_cols=50 Identities=22% Similarity=0.211 Sum_probs=35.6
Q ss_pred HHHHHHHHhccceecCceeeeEEEcCCCceEEEEeCCCCceEEecCEEEEcCCh
Q 014922 165 LPEAISKRLGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPS 218 (416)
Q Consensus 165 l~~~L~~~lg~~I~l~~~V~~I~~~~~~~v~v~~~~~~g~~~~~ad~VI~a~p~ 218 (416)
+.+...+..|-++++++.+++|... ++...|.+ ++|. .+.||-||+++-.
T Consensus 192 lL~~~le~~Gi~~~l~~~t~ei~g~-~~~~~vr~--~DG~-~i~ad~VV~a~GI 241 (793)
T COG1251 192 LLRRKLEDLGIKVLLEKNTEEIVGE-DKVEGVRF--ADGT-EIPADLVVMAVGI 241 (793)
T ss_pred HHHHHHHhhcceeecccchhhhhcC-cceeeEee--cCCC-cccceeEEEeccc
Confidence 3444444456799999999999874 33245653 6885 8999999999843
No 350
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=20.98 E-value=1.1e+02 Score=30.11 Aligned_cols=36 Identities=14% Similarity=0.206 Sum_probs=27.3
Q ss_pred hhhcCCCCEEEeeccCCCCch-hHHHHHHHHHHHHHHH
Q 014922 372 LRDNGYQGLFLGGNYVAGVAL-GRCVESAYEVASEVSN 408 (416)
Q Consensus 372 l~~~~~~~l~~aG~~~~g~~~-~~ai~sg~~aA~~il~ 408 (416)
+++ ..++||.+||...+..+ ..|...|+.||+.|+.
T Consensus 299 ~~T-s~p~IyAiGD~~~~~~l~~~A~~~g~~aa~~i~g 335 (466)
T PRK07818 299 MRT-NVPHIYAIGDVTAKLQLAHVAEAQGVVAAETIAG 335 (466)
T ss_pred ccc-CCCCEEEEeecCCCcccHhHHHHHHHHHHHHHcC
Confidence 344 57899999998754333 3499999999999874
No 351
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=20.95 E-value=1.1e+02 Score=31.30 Aligned_cols=35 Identities=20% Similarity=0.136 Sum_probs=26.6
Q ss_pred CCCCEEEeeccC----CC------CchhHHHHHHHHHHHHHHHHh
Q 014922 376 GYQGLFLGGNYV----AG------VALGRCVESAYEVASEVSNFL 410 (416)
Q Consensus 376 ~~~~l~~aG~~~----~g------~~~~~ai~sg~~aA~~il~~l 410 (416)
++++||-||+.. +| .++..|+..|+.|++.+...+
T Consensus 384 ~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~~~ 428 (598)
T PRK09078 384 VVPGLMAVGEAACVSVHGANRLGSNSLIDLVVFGRAAALRAAEVI 428 (598)
T ss_pred ccCceeecccccccCCcCcccccchhHHHHHHHHHHHHHHHHHhh
Confidence 689999999743 22 245569999999999887654
No 352
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=20.95 E-value=1.1e+02 Score=31.37 Aligned_cols=35 Identities=23% Similarity=0.176 Sum_probs=26.1
Q ss_pred CCCCEEEeeccC----CC------CchhHHHHHHHHHHHHHHHHh
Q 014922 376 GYQGLFLGGNYV----AG------VALGRCVESAYEVASEVSNFL 410 (416)
Q Consensus 376 ~~~~l~~aG~~~----~g------~~~~~ai~sg~~aA~~il~~l 410 (416)
++++||-||+.. +| .++..|+..|+.|++.+...+
T Consensus 379 ~IpGLYAaGE~a~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa~~~ 423 (588)
T PRK08958 379 VVPGLFAVGEIACVSVHGANRLGGNSLLDLVVFGRAAGLHLQESL 423 (588)
T ss_pred ccCCeEecccccccCCCCCccchhhHHHHHHHHHHHHHHHHHHHh
Confidence 689999999643 22 234569999999999887654
No 353
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=20.81 E-value=1.1e+02 Score=30.29 Aligned_cols=34 Identities=15% Similarity=0.319 Sum_probs=26.9
Q ss_pred CCCCEEEeeccCCCCchh-HHHHHHHHHHHHHHHH
Q 014922 376 GYQGLFLGGNYVAGVALG-RCVESAYEVASEVSNF 409 (416)
Q Consensus 376 ~~~~l~~aG~~~~g~~~~-~ai~sg~~aA~~il~~ 409 (416)
..++||.+||...+..+. .|...|+.||+.|+..
T Consensus 304 s~~~IyA~GD~~~~~~la~~A~~~g~~aa~~i~~~ 338 (466)
T PRK06115 304 SVPGVWVIGDVTSGPMLAHKAEDEAVACIERIAGK 338 (466)
T ss_pred CCCCEEEeeecCCCcccHHHHHHHHHHHHHHHcCC
Confidence 578999999987654443 4999999999998753
No 354
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=20.71 E-value=1e+02 Score=30.46 Aligned_cols=36 Identities=17% Similarity=0.163 Sum_probs=27.3
Q ss_pred hhhcCCCCEEEeeccCCCCc-hhHHHHHHHHHHHHHHH
Q 014922 372 LRDNGYQGLFLGGNYVAGVA-LGRCVESAYEVASEVSN 408 (416)
Q Consensus 372 l~~~~~~~l~~aG~~~~g~~-~~~ai~sg~~aA~~il~ 408 (416)
+++ ..++||.+||...... ...|+..|+.||+.|+.
T Consensus 300 ~~t-~~p~VyAiGDv~~~~~la~~A~~eG~~aa~~i~g 336 (471)
T PRK06467 300 CRT-NVPHIFAIGDIVGQPMLAHKGVHEGHVAAEVIAG 336 (471)
T ss_pred ccc-CCCCEEEehhhcCCcccHHHHHHHHHHHHHHHcC
Confidence 344 5789999999765433 34599999999999874
No 355
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=20.49 E-value=1.3e+02 Score=30.64 Aligned_cols=35 Identities=23% Similarity=0.169 Sum_probs=26.1
Q ss_pred CCCCEEEeeccC----CC------CchhHHHHHHHHHHHHHHHHh
Q 014922 376 GYQGLFLGGNYV----AG------VALGRCVESAYEVASEVSNFL 410 (416)
Q Consensus 376 ~~~~l~~aG~~~----~g------~~~~~ai~sg~~aA~~il~~l 410 (416)
++++||-||+.. +| .++.+|+.+|++|++.+...+
T Consensus 361 ~IpGLYAaGE~a~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa~~~ 405 (570)
T PRK05675 361 IIPGLFAVGEVACVSVHGANRLGGNSLLDLVVFGRAAGLHLEKAL 405 (570)
T ss_pred ccCCeeecccccccCCCCccccccccHHHHHHHHHHHHHHHHHHH
Confidence 589999999642 22 345669999999999887654
No 356
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=20.27 E-value=2.6e+02 Score=27.42 Aligned_cols=45 Identities=13% Similarity=0.296 Sum_probs=29.2
Q ss_pred ccceecCceeeeEEEcCCCce-EEEEe-------CCCC----------ceEEecCEEEEcCCh
Q 014922 174 GSKVKLSWKLSGVKKLDSGEY-SLTYE-------TPEG----------LVSLRSRSVVMTVPS 218 (416)
Q Consensus 174 g~~I~l~~~V~~I~~~~~~~v-~v~~~-------~~~g----------~~~~~ad~VI~a~p~ 218 (416)
|.+|++++.+++|..++++.+ .|++. ..+| .+++++|.||+++-.
T Consensus 323 GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~ 385 (449)
T TIGR01316 323 GVKFHFLCQPVEIIGDEEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGN 385 (449)
T ss_pred CCEEEeccCcEEEEEcCCCeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECCEEEECCCC
Confidence 668999999999976543323 23332 0122 236899999999765
No 357
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=20.26 E-value=1.2e+02 Score=29.91 Aligned_cols=37 Identities=19% Similarity=0.290 Sum_probs=28.1
Q ss_pred hhhcCCCCEEEeeccCCCCch-hHHHHHHHHHHHHHHHH
Q 014922 372 LRDNGYQGLFLGGNYVAGVAL-GRCVESAYEVASEVSNF 409 (416)
Q Consensus 372 l~~~~~~~l~~aG~~~~g~~~-~~ai~sg~~aA~~il~~ 409 (416)
+++ ..++||.+||...+..+ ..|...|+.||..|+..
T Consensus 292 ~~T-s~~~VyAiGD~~~~~~~~~~A~~~g~~aa~ni~~~ 329 (463)
T TIGR02053 292 LRT-SNPGIYAAGDVTGGLQLEYVAAKEGVVAAENALGG 329 (463)
T ss_pred ccC-CCCCEEEeeecCCCcccHhHHHHHHHHHHHHhcCC
Confidence 344 57899999998765433 44999999999998753
Done!