Query 014923
Match_columns 416
No_of_seqs 120 out of 219
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 01:23:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014923.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014923hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2722 Predicted membrane pro 100.0 2E-113 5E-118 839.4 19.4 400 1-416 2-408 (408)
2 PF03547 Mem_trans: Membrane t 100.0 1.5E-51 3.3E-56 418.4 32.3 373 10-408 2-385 (385)
3 COG0679 Predicted permeases [G 100.0 1.4E-29 3.1E-34 252.0 26.0 308 7-414 2-310 (311)
4 TIGR00946 2a69 he Auxin Efflux 100.0 1.1E-27 2.5E-32 238.9 26.2 315 6-410 2-319 (321)
5 PRK09903 putative transporter 99.9 9.1E-25 2E-29 217.6 29.3 306 12-415 7-313 (314)
6 TIGR00841 bass bile acid trans 97.4 0.0011 2.4E-08 65.6 10.6 110 298-413 12-122 (286)
7 PF01758 SBF: Sodium Bile acid 93.6 0.43 9.2E-06 44.1 8.9 108 300-413 4-113 (187)
8 TIGR00841 bass bile acid trans 93.4 1.2 2.7E-05 44.0 12.4 132 10-160 137-273 (286)
9 COG0385 Predicted Na+-dependen 92.1 1.1 2.4E-05 45.2 9.9 110 297-413 41-152 (319)
10 TIGR00832 acr3 arsenical-resis 91.3 3.8 8.1E-05 41.5 13.0 143 259-413 13-158 (328)
11 PF13593 DUF4137: SBF-like CPA 89.3 3.4 7.5E-05 41.5 10.7 141 259-412 4-147 (313)
12 COG0385 Predicted Na+-dependen 79.8 7 0.00015 39.5 7.7 45 74-118 224-268 (319)
13 TIGR00832 acr3 arsenical-resis 78.6 4.1 8.9E-05 41.2 5.7 107 17-127 184-297 (328)
14 PF05684 DUF819: Protein of un 67.9 15 0.00033 38.0 6.9 84 17-106 28-118 (378)
15 PRK11339 abgT putative aminobe 48.5 48 0.001 35.7 6.8 79 13-93 89-173 (508)
16 PRK11677 hypothetical protein; 46.6 21 0.00046 31.6 3.2 25 73-100 3-27 (134)
17 PF03806 ABG_transport: AbgT p 45.8 1.9E+02 0.0041 31.3 10.7 145 13-172 79-231 (502)
18 PF13593 DUF4137: SBF-like CPA 44.2 2.3E+02 0.005 28.4 10.7 106 13-126 163-276 (313)
19 PF09512 ThiW: Thiamine-precur 43.9 40 0.00086 30.5 4.5 85 9-98 51-148 (150)
20 TIGR00783 ccs citrate carrier 41.8 64 0.0014 33.1 6.2 82 18-101 208-294 (347)
21 KOG2262 Sexual differentiation 38.9 6.6 0.00014 43.2 -1.4 100 58-169 432-534 (761)
22 PRK12460 2-keto-3-deoxyglucona 37.6 79 0.0017 32.0 6.0 103 13-124 165-268 (312)
23 PF06295 DUF1043: Protein of u 36.5 34 0.00073 29.8 2.9 22 79-100 2-23 (128)
24 PF05684 DUF819: Protein of un 34.3 2.2E+02 0.0048 29.5 8.9 105 14-129 240-345 (378)
25 PF06305 DUF1049: Protein of u 31.9 28 0.0006 26.3 1.4 27 73-99 18-44 (68)
26 PF03616 Glt_symporter: Sodium 29.5 6.4E+02 0.014 25.9 12.7 106 56-171 73-187 (368)
27 COG3763 Uncharacterized protei 28.0 93 0.002 24.5 3.7 25 71-95 2-26 (71)
28 PLN03159 cation/H(+) antiporte 27.0 1.2E+02 0.0025 34.9 5.9 92 38-133 314-408 (832)
29 PRK14231 camphor resistance pr 27.0 91 0.002 27.3 4.0 90 71-169 30-119 (129)
30 TIGR00819 ydaH p-Aminobenzoyl- 25.6 7.9E+02 0.017 26.7 11.5 143 14-170 86-235 (513)
31 PRK01844 hypothetical protein; 24.2 1.2E+02 0.0026 24.1 3.7 24 72-95 3-26 (72)
32 PRK05326 potassium/proton anti 24.1 3.4E+02 0.0073 29.4 8.6 97 22-124 252-350 (562)
33 COG2855 Predicted membrane pro 22.7 1.2E+02 0.0026 31.0 4.4 102 60-170 79-181 (334)
34 PF11120 DUF2636: Protein of u 22.6 86 0.0019 24.1 2.6 28 65-98 2-29 (62)
35 PF03812 KdgT: 2-keto-3-deoxyg 21.5 3.1E+02 0.0066 27.8 7.0 108 11-126 168-276 (314)
36 COG2323 Predicted membrane pro 21.5 1.8E+02 0.0039 28.0 5.2 85 14-105 8-92 (224)
37 COG2978 AbgT Putative p-aminob 21.4 2.6E+02 0.0056 30.0 6.6 141 18-174 95-244 (516)
38 KOG2718 Na+-bile acid cotransp 21.2 59 0.0013 33.7 1.9 74 43-116 107-187 (371)
39 PF05145 AmoA: Putative ammoni 21.0 1.5E+02 0.0032 29.9 4.7 47 55-101 33-83 (318)
40 KOG3788 Predicted divalent cat 20.6 4E+02 0.0087 28.1 7.7 102 259-410 123-236 (441)
41 PF06522 B12D: NADH-ubiquinone 20.4 1.2E+02 0.0026 23.8 3.2 28 74-101 6-33 (73)
42 TIGR03082 Gneg_AbrB_dup membra 20.4 1.8E+02 0.004 25.9 4.8 47 55-101 55-105 (156)
43 PRK04972 putative transporter; 20.3 3.1E+02 0.0068 29.9 7.4 149 12-169 12-187 (558)
44 TIGR03802 Asp_Ala_antiprt aspa 20.1 2.3E+02 0.0051 30.9 6.4 147 10-170 8-187 (562)
45 COG3180 AbrB Putative ammonia 20.1 1.5E+02 0.0033 30.5 4.6 81 54-153 65-149 (352)
No 1
>KOG2722 consensus Predicted membrane protein [Function unknown]
Probab=100.00 E-value=2.5e-113 Score=839.39 Aligned_cols=400 Identities=48% Similarity=0.844 Sum_probs=346.7
Q ss_pred CchHHHHHHHH--HHHHHHHHHHHHHHHHHhccCCCCChhHHhhhhhhhHhhhhhhHHHHhhccccccccchhhhHHHHH
Q 014923 1 MEILDLFEVAL--MPILKVLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLWFMPVN 78 (416)
Q Consensus 1 m~~~~li~~a~--~pvlkvlli~~~G~~lA~~~~~iL~~~~~k~ls~lv~~vflP~LiFskla~~it~~~l~~~w~iPvn 78 (416)
||+++++..|. +|++||++||.+||++|+||.|+|++|+||.+|++||++|+|||||+|+|+++|.||+.+|||||+|
T Consensus 2 mgf~s~~~vas~v~pvlqvl~i~~~G~~lA~~~~~lLp~dark~ln~Lvf~lFtPcLiFs~La~svtl~~ii~~wfiPVn 81 (408)
T KOG2722|consen 2 MGFLSLLEVASGVMPVLQVLLITLVGFLLASDYVNLLPRDARKLLNKLVFYLFTPCLIFSKLAQSVTLEKIIQWWFIPVN 81 (408)
T ss_pred chHHHHHHHhcccccHHHHHHHHHHHHHHhccccCcCCHHHHHHhhheeeeeecHHHHHHHHhhhccHHHHHHHHhhHHH
Confidence 89999999999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCccCeeeEEeecCCcchhHHHHHHHhhhcCCCCCCCchhhcchhhHHHHHHH-HHHH
Q 014923 79 ILLSFLIGSALAWILIKITRTPPHLQGLVIGCCSAGNMGNLLLIIVPAVCEESNSPFGDTSVCSSYGKAYASLSM-VGAI 157 (416)
Q Consensus 79 ~ll~~~iG~~lg~~v~~i~~~P~~~r~~~i~~~~fgN~g~LPl~lv~sl~~~~~~pFg~~~~~~~~G~aYv~~~~-~g~i 157 (416)
++++|++|.++||+++|++|+|+++||++++||+|||+||||+++++|+|++|++|||++|+|.+||++|++++| +|++
T Consensus 82 v~Lt~~ig~liG~lv~~I~rppp~~~~fiia~~a~GN~gnlpL~Lv~alc~~~~~Pfg~~~~c~s~Gi~Y~sf~~~lg~i 161 (408)
T KOG2722|consen 82 VGLTFIIGSLIGWLVVKILRPPPQLRGFIIACCAFGNSGNLPLILVPALCDEDGIPFGNREKCASRGISYVSFSQQLGQI 161 (408)
T ss_pred HHHHHHHHHHHHHHHhheecCChhhcCeEEEEeecCCcCCcHHHHhHHHhcccCCCCCChhhhhhcchhHHHHHHHhhhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred HHhhhhhhhhhhccccc-ccCCCCCCCc-ccccc-CCCCCCccccccCCcCCCCCCCCCCCCCcchhhhhhhccCCCcch
Q 014923 158 YIWTYVYYVMSLYLNKS-VSDAGTNKDS-RIHII-SSGESSTNIFLESSRKPLLHSSDRRSPDDSQIQAETRSTKSRFPF 234 (416)
Q Consensus 158 ~~wt~~~~ll~~~~~~~-~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (416)
++|||+||++.++..+. +...+..-|. ..+.. .+.|. .++++++++...+.+++ +++ ..+.
T Consensus 162 l~wty~Y~~~~~p~~~~~~~~~~~~Ve~~~~~~~~~s~e~----~~~~~~k~~ll~~~en~--~~~----------~~g~ 225 (408)
T KOG2722|consen 162 LRWTYVYRMLLPPNLELMSALKESPVEALLESVPQPSVES----DEDSTCKTLLLASKENR--NNQ----------VVGR 225 (408)
T ss_pred EEEEEEeeeecCCchhhhhcCChhhhhhhhhccCCCCccc----ccccccccccccccccC--CCc----------eeec
Confidence 99999999887663211 1111000000 00000 00000 01111221111111111 111 1123
Q ss_pred hHHHHHHHHHHHhhhhhhhccChhHHHHHHHHHHhcchhhhhhhccCCCchhhHHHHHHHhhcchhhHHHHHhhhhcccC
Q 014923 235 LDKMRQRINKFTEKIDLKMIFAPSTIAAIIGFVIGTISPFRKVIVGESAPLRVLDSSAALVGEAAIPAMTLVIGANLLSG 314 (416)
Q Consensus 235 ~~~~~~~~~~~~~~~~l~~~~~Pp~ia~ilg~ivg~ippLk~l~~~~~apL~~i~ds~~~lG~a~IP~~llvLGa~L~~g 314 (416)
+.+.+++.+...++.+++++++|||+|+++|+++|.|||||+++|+++|||++++|+++++|+++|||++++|||||++|
T Consensus 226 ~~~~~~~~~~~~~~~~L~~i~~Pptia~iiA~vigai~pLr~lifg~~apl~~itdsv~llG~~~IP~illvLGgnL~~g 305 (408)
T KOG2722|consen 226 EGKVKRRSVSLSEKVILKEIFAPPTIAAIIALVIGAIPPLRRLIFGEDAPLRVITDSVTLLGDGAIPCILLVLGGNLIQG 305 (408)
T ss_pred cccceEEEeehhHHhhHHHhcCchHHHHHHHHHHhcchHHHHHhhccCchHHHHHHHHHHhccccchhhhhhhccccccC
Confidence 33344444555566668999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCCCCchhhHHHHHHHHHHHhHHHHHHHHHHHHhCCCC-CChHHHHHHHhhccCchhHHHHHHHhhhccCchhhHHHH
Q 014923 315 LKRSGVGVSLIMGIIAIRYILLPLLGIVIVKAAYRFGFIG-SDSLYQFILLLQYAVPPALAVGTIIQLFETSESECSVIL 393 (416)
Q Consensus 315 ~~~s~l~~~~iv~iv~~RliilPiigv~iv~~~~k~g~~~-~Dpl~~fVllL~~~~P~A~~l~~itql~~~~e~e~S~il 393 (416)
+++|.++.|++++++++||+++|+.|+++|..|+|+|.++ |||+|+||++|||++|||||+++|||+||.+|+|||+++
T Consensus 306 ~~ss~~~~~~iigiii~R~illP~~gl~iv~~A~kl~~ls~~DPlF~~VllLq~~~PpAi~lg~itqL~g~~e~Ecs~il 385 (408)
T KOG2722|consen 306 LRSSALKTSVIIGIIIGRYILLPLVGLGIVRLADKLGLLSTDDPLFQFVLLLQYASPPAINLGTITQLNGVAERECSVIL 385 (408)
T ss_pred chhcccCceEEEEEEEeeeeccchhhHHHHHHHHHhCcCCCCCchhhhhhhhhhcCCchhhHHHHHHHhhhhHHHHHHHH
Confidence 9999999999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Q 014923 394 LWTYAVAAFALTLWITFYIWLLT 416 (416)
Q Consensus 394 fwqY~~~~vslt~~~t~~l~l~~ 416 (416)
||+|+++.+++|+|+++|+|++.
T Consensus 386 ~W~y~va~l~ltvw~~~f~~lv~ 408 (408)
T KOG2722|consen 386 FWTYAVASLSLTVWSVFFLWLVV 408 (408)
T ss_pred HHHHHHHHhhHHHHHHHHHHHhC
Confidence 99999999999999999999973
No 2
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=100.00 E-value=1.5e-51 Score=418.37 Aligned_cols=373 Identities=30% Similarity=0.454 Sum_probs=289.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCChhHHhhhhhhhHhhhhhhHHHHhhccccccccchhhhHHHHHHHHHHHHHHHH
Q 014923 10 ALMPILKVLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLWFMPVNILLSFLIGSAL 89 (416)
Q Consensus 10 a~~pvlkvlli~~~G~~lA~~~~~iL~~~~~k~ls~lv~~vflP~LiFskla~~it~~~l~~~w~iPvn~ll~~~iG~~l 89 (416)
++++++++++++++||+++ |+|+++++++|.+|++++++++|||+|++++++.+.+++.++|+++++..+.+++++++
T Consensus 2 v~~~i~~i~~ii~~G~~~~--~~~~l~~~~~~~ls~lv~~~~lP~liF~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (385)
T PF03547_consen 2 VFSAILPIFLIILLGYLLG--RFGILDPEASKGLSKLVFNVFLPALIFSSIANTDTLEDLLSLWFIPVFAFIIFILGLLL 79 (385)
T ss_pred cHHHHHHHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCccCeeeEEeecCCcchhHHHHHHHhhhcCCCCCCCchhhcchhhHHHHHHH-HHHHHHhhhhhhhhh
Q 014923 90 AWILIKITRTPPHLQGLVIGCCSAGNMGNLLLIIVPAVCEESNSPFGDTSVCSSYGKAYASLSM-VGAIYIWTYVYYVMS 168 (416)
Q Consensus 90 g~~v~~i~~~P~~~r~~~i~~~~fgN~g~LPl~lv~sl~~~~~~pFg~~~~~~~~G~aYv~~~~-~g~i~~wt~~~~ll~ 168 (416)
+|++.|++|.|+++|+....+|+++|.+++|+.++++++.+ +|++|++++. ++.++.|++++.+++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~N~~~lglpi~~~l~g~-------------~~~~~~~~~~~~~~i~~~~~~~~l~~ 146 (385)
T PF03547_consen 80 GFLLSRLFRLPKEWRGVFVLAASFGNTGFLGLPILQALFGE-------------RGVAYAIIFDVVNNIILWSLGYFLLE 146 (385)
T ss_pred HHHHHHhcCCCcccceEEEecccCCcchhhHHHHHHHHhcc-------------hhhhhehHHHHhhHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999753 8999999999 999999999999987
Q ss_pred hcccccccCCCCCC-Ccc-ccccC-C-----CCCC-cccc-ccCCcCCCCCCCCCCCCCcchhhhhhhccCCCcchhHHH
Q 014923 169 LYLNKSVSDAGTNK-DSR-IHIIS-S-----GESS-TNIF-LESSRKPLLHSSDRRSPDDSQIQAETRSTKSRFPFLDKM 238 (416)
Q Consensus 169 ~~~~~~~~~~~~~~-~~~-~~~~~-~-----~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (416)
.+.++.+++++.++ .++ .+.+. + ++++ ...+ +..+++.+.....+.+.+.++..+..++.+.....+.+.
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (385)
T PF03547_consen 147 SRSEKEDKSEEEPSSAESIDSEQEDSDEMSLDGSSPSSTEEEIDEDGSPSSTPSQSSASAPSSVSTSPSPSNSTGAEQKS 226 (385)
T ss_pred ccccccccccccccccccccccccCCccccCCcccccccccccccCCcccccccccccccchhhccCCcccccchhhhhh
Confidence 76443222110010 000 00000 0 0000 0000 000000000000000000000000000000011112222
Q ss_pred HHHHHHHHhhhhhhhccChhHHHHHHHHHHhcchhhhhhhccCCCchhhHHHHHHHhhcchhhHHHHHhhhhcccCCccC
Q 014923 239 RQRINKFTEKIDLKMIFAPSTIAAIIGFVIGTISPFRKVIVGESAPLRVLDSSAALVGEAAIPAMTLVIGANLLSGLKRS 318 (416)
Q Consensus 239 ~~~~~~~~~~~~l~~~~~Pp~ia~ilg~ivg~ippLk~l~~~~~apL~~i~ds~~~lG~a~IP~~llvLGa~L~~g~~~s 318 (416)
+++.+....+...+.+++||++|+++|++++++|+.|.++++ .+++++++++|++++|++++++|++|+++++.+
T Consensus 227 ~~~~~~~~~~~~~~~~~nP~~~a~~lgli~~~~~~~~~~~~~-----~~i~~~~~~lg~~~~pl~l~~lG~~l~~~~~~~ 301 (385)
T PF03547_consen 227 SNSTRKKLKKSILKLFKNPPLIAIILGLIIGLIPPLRPLFFP-----SFITDSLSYLGAAAVPLALFVLGASLARGPRKS 301 (385)
T ss_pred hhhHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcccchH-----hHHHHHHHHHHhhhHHHHHHHHHHHHhcCCccc
Confidence 222222222222589999999999999999999999999986 899999999999999999999999999988888
Q ss_pred CCCchhhHHHHHHHHHHHhHHHHHHHHHHHHhCCCCCChHHHHHHHhhccCchhHHHHHHHhhhccCchhhHHHHHHHHH
Q 014923 319 GVGVSLIMGIIAIRYILLPLLGIVIVKAAYRFGFIGSDSLYQFILLLQYAVPPALAVGTIIQLFETSESECSVILLWTYA 398 (416)
Q Consensus 319 ~l~~~~iv~iv~~RliilPiigv~iv~~~~k~g~~~~Dpl~~fVllL~~~~P~A~~l~~itql~~~~e~e~S~ilfwqY~ 398 (416)
+.+.+.....++.|++++|+++++++..+. -|+....++++|.++|||++..++++.||..++++|..++|+|+
T Consensus 302 ~~~~~~~~~~~~~rlii~P~i~~~~~~~~~------l~~~~~~~~~~~~~~P~a~~~~~~a~~~~~~~~~~s~~~~~~~~ 375 (385)
T PF03547_consen 302 ALGWKPSIIAVLVRLIILPLIGIGIVFLLG------LDGDMARVLILQAAMPTAINSFVIASLYGLDEEEASSIVFWSTL 375 (385)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHhccCCchHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 888899888999999999999999998764 36667889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 014923 399 VAAFALTLWI 408 (416)
Q Consensus 399 ~~~vslt~~~ 408 (416)
++.+++|+|+
T Consensus 376 ~~~~~~~~~~ 385 (385)
T PF03547_consen 376 LSIPTLPLWI 385 (385)
T ss_pred HHHHHHHHHC
Confidence 9999999995
No 3
>COG0679 Predicted permeases [General function prediction only]
Probab=99.97 E-value=1.4e-29 Score=252.02 Aligned_cols=308 Identities=21% Similarity=0.328 Sum_probs=260.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCChhHHhhhhhhhHhhhhhhHHHHhhccccccccchhhhHHHHHHHHHHHHH
Q 014923 7 FEVALMPILKVLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLWFMPVNILLSFLIG 86 (416)
Q Consensus 7 i~~a~~pvlkvlli~~~G~~lA~~~~~iL~~~~~k~ls~lv~~vflP~LiFskla~~it~~~l~~~w~iPvn~ll~~~iG 86 (416)
++..+.++++++++.++||+++ |.|.++++..|.+|++++++++|||+|++++++-..++ +++..+++..+.+...+
T Consensus 2 ~~~~~~~vlpi~lii~lGy~~~--r~~~~~~~~~~~ls~lv~~~~lP~LlF~~i~~~~~~~~-~~~~~~~~~~~~~~~~~ 78 (311)
T COG0679 2 MMIVFEVVLPIFLIILLGYLLK--RFGILDEEAARGLSRLVVYVALPALLFNSIATADLSGL-ADLGLIVASLVATLLAF 78 (311)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH--HhcccCHHHHHHHHHHHHHHHhHHHHHHHHHhCCcchh-hhHHHHHHHHHHHHHHH
Confidence 4678899999999999999999 99999999999999999999999999999999987666 88999999889999999
Q ss_pred HHHHHHHHHHhcCCCCccCeeeEEeecCCcchhHHHHHHHhhhcCCCCCCCchhhcchhhHHHHHHH-HHHHHHhhhhhh
Q 014923 87 SALAWILIKITRTPPHLQGLVIGCCSAGNMGNLLLIIVPAVCEESNSPFGDTSVCSSYGKAYASLSM-VGAIYIWTYVYY 165 (416)
Q Consensus 87 ~~lg~~v~~i~~~P~~~r~~~i~~~~fgN~g~LPl~lv~sl~~~~~~pFg~~~~~~~~G~aYv~~~~-~g~i~~wt~~~~ 165 (416)
.+..++..+..|.++++++....+++|+|+|++++.+..++ || ++|++|.++++ ++.+..|++++.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~g~lg~pi~~~~-------~G------~~gl~~~~i~~~~~~~~~~~~g~~ 145 (311)
T COG0679 79 FLLALIGRFLFKLDKRETVIFALASAFPNIGFLGLPVALSL-------FG------EKGLAYAVIFLIIGLFLMFTLGVI 145 (311)
T ss_pred HHHHHHHHHHhccchhhHHHHHHHHHhcccchhhHHHHHHH-------cC------cchHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999997766666 45 67999999999 999999999998
Q ss_pred hhhhcccccccCCCCCCCccccccCCCCCCccccccCCcCCCCCCCCCCCCCcchhhhhhhccCCCcchhHHHHHHHHHH
Q 014923 166 VMSLYLNKSVSDAGTNKDSRIHIISSGESSTNIFLESSRKPLLHSSDRRSPDDSQIQAETRSTKSRFPFLDKMRQRINKF 245 (416)
Q Consensus 166 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (416)
.+.+... ++ +. ..++-.+
T Consensus 146 ~l~~~~~--------~~------------------------------------~~----------------~~~~~~~-- 163 (311)
T COG0679 146 LLARSGG--------GT------------------------------------NK----------------SLLSVLK-- 163 (311)
T ss_pred HHHHhcC--------Cc------------------------------------hh----------------HHHHHHH--
Confidence 7755521 00 00 0111111
Q ss_pred HhhhhhhhccChhHHHHHHHHHHhcchhhhhhhccCCCchhhHHHHHHHhhcchhhHHHHHhhhhcccCCccCCCCchhh
Q 014923 246 TEKIDLKMIFAPSTIAAIIGFVIGTISPFRKVIVGESAPLRVLDSSAALVGEAAIPAMTLVIGANLLSGLKRSGVGVSLI 325 (416)
Q Consensus 246 ~~~~~l~~~~~Pp~ia~ilg~ivg~ippLk~l~~~~~apL~~i~ds~~~lG~a~IP~~llvLGa~L~~g~~~s~l~~~~i 325 (416)
+-+.+|+.+|.++|++..... + ..-.++.++.+++|++++|++++.+|..|+. .+.++...+.+
T Consensus 164 ------~~~~nP~i~a~i~g~~~~~~~------i---~lP~~~~~~~~~l~~a~~pl~li~lG~~L~~-~~~~~~~~~~~ 227 (311)
T COG0679 164 ------KLLTNPLIIALILGLLLNLLG------I---SLPAPLDTAVDLLASAASPLALIALGLSLAF-LKLKGSKPPII 227 (311)
T ss_pred ------HHHhCcHHHHHHHHHHHHHcC------C---CCcHHHHHHHHHHHHhhhhHHHHHHhhhcch-hhhccccchhH
Confidence 556789999999999987654 1 1113899999999999999999999999988 55677778888
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhCCCCCChHHHHHHHhhccCchhHHHHHHHhhhccCchhhHHHHHHHHHHHHHHHH
Q 014923 326 MGIIAIRYILLPLLGIVIVKAAYRFGFIGSDSLYQFILLLQYAVPPALAVGTIIQLFETSESECSVILLWTYAVAAFALT 405 (416)
Q Consensus 326 v~iv~~RliilPiigv~iv~~~~k~g~~~~Dpl~~fVllL~~~~P~A~~l~~itql~~~~e~e~S~ilfwqY~~~~vslt 405 (416)
......|+++.|++..++.+.. | -++...-|++++.++|+|.|-..+++.+|..++..+...+-|=.++.+++|
T Consensus 228 ~~~~~~kll~~Pl~~~~~~~~~---~---l~~~~~~v~vl~~a~P~A~~~~v~a~~~~~~~~laa~~i~ist~ls~~t~p 301 (311)
T COG0679 228 LIALSLKLLLAPLVALLVAKLL---G---LSGLALQVLVLLSAMPTAVNAYVLARQYGGDPRLAASTILLSTLLSLLTLP 301 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc---C---CChHHHHHHHHHhhCcHHhHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHH
Confidence 8888889999999999965533 2 244445899999999999999999999988888899999999999999999
Q ss_pred HHHHHHHHh
Q 014923 406 LWITFYIWL 414 (416)
Q Consensus 406 ~~~t~~l~l 414 (416)
.|..++.+.
T Consensus 302 ~~~~~l~~~ 310 (311)
T COG0679 302 LLILLLLRS 310 (311)
T ss_pred HHHHHHhcc
Confidence 998877653
No 4
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=99.96 E-value=1.1e-27 Score=238.87 Aligned_cols=315 Identities=17% Similarity=0.176 Sum_probs=243.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HhccCCCCChhHHhhhhhhhHhhhhhhHHHHhhccccccccchhhhHHHHHHHHHHH
Q 014923 6 LFEVALMPILKVLLVTALGLVL-AIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLWFMPVNILLSFL 84 (416)
Q Consensus 6 li~~a~~pvlkvlli~~~G~~l-A~~~~~iL~~~~~k~ls~lv~~vflP~LiFskla~~it~~~l~~~w~iPvn~ll~~~ 84 (416)
.+|..+..++.++++.++||++ . |+++++++..|.+|++++++.+|||+|++++++-..++....+...+.....+.
T Consensus 2 ~~~~~~~~ilpv~~ii~lG~~~~~--r~~~~~~~~~~~l~~~v~~i~lP~lif~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (321)
T TIGR00946 2 ITYVILETVLPILVVILLGYILGK--RFGILDEEHASGINRFVINFALPLTIFHSISTTLADILQKSQSPVVLFLWGAFS 79 (321)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHH--HhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678889999999999999999 7 999999999999999999999999999999985333233344333344555667
Q ss_pred HHHHHHHHHHH-HhcCCCCccCeeeEEeecCCcchhHHHHHHHhhhcCCCCCCCchhhcchhhHHHHHHH-HHHHHHhhh
Q 014923 85 IGSALAWILIK-ITRTPPHLQGLVIGCCSAGNMGNLLLIIVPAVCEESNSPFGDTSVCSSYGKAYASLSM-VGAIYIWTY 162 (416)
Q Consensus 85 iG~~lg~~v~~-i~~~P~~~r~~~i~~~~fgN~g~LPl~lv~sl~~~~~~pFg~~~~~~~~G~aYv~~~~-~g~i~~wt~ 162 (416)
..++++|.+.| .+|.+++.++....++.++|.+++-+-+++++- |++. ..++.|+..+. ...+..|++
T Consensus 80 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~GlPl~~~~~-------G~~~---~~~~~~~~~~~~~~~~~~~~~ 149 (321)
T TIGR00946 80 GSYALIWLITKPLFKADYGKLSGFLLVSALPNTAFIGYPLLLSLF-------GEEG---AKILIAALFIDTGAVLMTIAL 149 (321)
T ss_pred HHHHHHHHHHHHHHhcccchhhHHHHHhhhccceeehHHHHHHHh-------cccc---hhhhHHHHHHHhccchhHHHH
Confidence 78899999998 889999999999999999999999999999994 4321 11366766666 556778999
Q ss_pred hhhhhhhcccccccCCCCCCCccccccCCCCCCccccccCCcCCCCCCCCCCCCCcchhhhhhhccCCCcchhHHHHHHH
Q 014923 163 VYYVMSLYLNKSVSDAGTNKDSRIHIISSGESSTNIFLESSRKPLLHSSDRRSPDDSQIQAETRSTKSRFPFLDKMRQRI 242 (416)
Q Consensus 163 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (416)
++.+.+...+ +. ++ .. ++.++..++.+
T Consensus 150 ~~~~~~~~~~----~~--~~-----------------------------------~~------------~~~~~~~~~~~ 176 (321)
T TIGR00946 150 GLFLVSEDGA----GG--EG-----------------------------------SG------------ESTRLMLIFVW 176 (321)
T ss_pred HHHHhccccc----cc--cc-----------------------------------cc------------hhHHHHHHHHH
Confidence 8754321100 00 00 00 00111111111
Q ss_pred HHHHhhhhhhhccChhHHHHHHHHHHhcchhhhhhhccCCCchhhHHHHHHHhhcchhhHHHHHhhhhcccCCccCCCCc
Q 014923 243 NKFTEKIDLKMIFAPSTIAAIIGFVIGTISPFRKVIVGESAPLRVLDSSAALVGEAAIPAMTLVIGANLLSGLKRSGVGV 322 (416)
Q Consensus 243 ~~~~~~~~l~~~~~Pp~ia~ilg~ivg~ippLk~l~~~~~apL~~i~ds~~~lG~a~IP~~llvLGa~L~~g~~~s~l~~ 322 (416)
+ +-+.+|+.+|.++|+++..... ..=.++.|+++++|++++|+.++++|..+.. ++.+.+.
T Consensus 177 ~--------~~~~nP~iia~i~Gl~~~~~~i---------~lP~~l~~~l~~lg~~~~plaLl~lG~~l~~--~~~~~~~ 237 (321)
T TIGR00946 177 K--------KLIKFPPLWAPLLSVILSLVGF---------KMPGLILKSISILSGATTPMALFSLGLALSP--RKIKLGV 237 (321)
T ss_pred H--------HHHhCCChHHHHHHHHHHHHhh---------cCcHHHHHHHHHHHHHHHHHHHHHHHHhhCh--hhhccCh
Confidence 1 3446899999999999988753 1116899999999999999999999999964 3333456
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHHHHHHhCCCCCChHHHHHHHhhccCchhHHHHHHHhhhccCchhhHHHHHHHHHHHHH
Q 014923 323 SLIMGIIAIRYILLPLLGIVIVKAAYRFGFIGSDSLYQFILLLQYAVPPALAVGTIIQLFETSESECSVILLWTYAVAAF 402 (416)
Q Consensus 323 ~~iv~iv~~RliilPiigv~iv~~~~k~g~~~~Dpl~~fVllL~~~~P~A~~l~~itql~~~~e~e~S~ilfwqY~~~~v 402 (416)
+.+...++.|+++.|++..++... ++-|+..+-+++++.++|||.+...+++.||..+++++...+++..++.+
T Consensus 238 ~~~~~~~~~klil~P~i~~~~~~~------~~l~~~~~~~~vl~aa~P~a~~~~i~A~~y~~~~~~aa~~v~~sT~ls~~ 311 (321)
T TIGR00946 238 RDAILALIVRFLVQPAVMAGISKL------IGLRGLELSVAILQAALPGGAVAAVLATEYEVDVELASTAVTLSTVLSLI 311 (321)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------hCCChHHHHHHHHHHcCChhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 788889999999999999777653 24478889999999999999999999999999998899999999999999
Q ss_pred HHHHHHHH
Q 014923 403 ALTLWITF 410 (416)
Q Consensus 403 slt~~~t~ 410 (416)
++|+|+.+
T Consensus 312 tlp~~~~l 319 (321)
T TIGR00946 312 SLPLFIIL 319 (321)
T ss_pred HHHHHHHH
Confidence 99999875
No 5
>PRK09903 putative transporter YfdV; Provisional
Probab=99.94 E-value=9.1e-25 Score=217.63 Aligned_cols=306 Identities=15% Similarity=0.178 Sum_probs=231.8
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCChhHHhhhhhhhHhhhhhhHHHHhhccccccccchhhhHHHHHHHHHHHHHHHHHH
Q 014923 12 MPILKVLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLWFMPVNILLSFLIGSALAW 91 (416)
Q Consensus 12 ~pvlkvlli~~~G~~lA~~~~~iL~~~~~k~ls~lv~~vflP~LiFskla~~it~~~l~~~w~iPvn~ll~~~iG~~lg~ 91 (416)
..++-++++.++||++. |+|+++++..|.+|++++++.+||++|+++.+. +.+++.+-|-+.+...+.+...++++|
T Consensus 7 ~~ilpif~ii~lG~~~~--r~~~~~~~~~~~ls~lv~~v~lPalif~s~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (314)
T PRK09903 7 GDLLPIIVIMLLGYFSG--RRETFSEDQARAFNKLVLNYALPAALFVSITRA-NREMIFADTRLTLVSLVVIVGCFFFSW 83 (314)
T ss_pred HHHHHHHHHHHHHHHHH--HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 34566679999999999 999999999999999999999999999999975 555555334456767777888888888
Q ss_pred HHHH-HhcCCCCccCeeeEEeecCCcchhHHHHHHHhhhcCCCCCCCchhhcchhhHHHHHHHHHHHHHhhhhhhhhhhc
Q 014923 92 ILIK-ITRTPPHLQGLVIGCCSAGNMGNLLLIIVPAVCEESNSPFGDTSVCSSYGKAYASLSMVGAIYIWTYVYYVMSLY 170 (416)
Q Consensus 92 ~v~~-i~~~P~~~r~~~i~~~~fgN~g~LPl~lv~sl~~~~~~pFg~~~~~~~~G~aYv~~~~~g~i~~wt~~~~ll~~~ 170 (416)
++.+ ..|-+++.++....+++++|.|++-+-+++++ ||++. .-|+.|..++.+..++.|+++..+++..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~N~gf~G~Pl~~~~-------~G~~~---~~~~~~a~~~~~~~~~~~~~g~~~~~~~ 153 (314)
T PRK09903 84 FGCYKFFKRTHAEAAVCALIAGSPTIGFLGFAVLDPI-------YGDSV---STGLVVAIISIIVNAITIPIGLYLLNPS 153 (314)
T ss_pred HHHHHHhcCCcchhhHhhhhhcCCCcccccHHHHHHH-------cCchh---hhhhHHHHHHHHHHHHHHHHHHHHHccc
Confidence 8875 66777777777888889999999999999998 45431 1266555554477889999987766432
Q ss_pred ccccccCCCCCCCccccccCCCCCCccccccCCcCCCCCCCCCCCCCcchhhhhhhccCCCcchhHHHHHHHHHHHhhhh
Q 014923 171 LNKSVSDAGTNKDSRIHIISSGESSTNIFLESSRKPLLHSSDRRSPDDSQIQAETRSTKSRFPFLDKMRQRINKFTEKID 250 (416)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (416)
+. . ++ +.+ . .++.++
T Consensus 154 ~~-----~--~~-----------------------------------~~~------------~----~~~~l~------- 168 (314)
T PRK09903 154 SG-----A--DG-----------------------------------KKN------------S----NLSALI------- 168 (314)
T ss_pred cc-----c--cc-----------------------------------ccc------------h----HHHHHH-------
Confidence 10 0 00 000 0 011122
Q ss_pred hhhccChhHHHHHHHHHHhcchhhhhhhccCCCchhhHHHHHHHhhcchhhHHHHHhhhhcccCCccCCCCchhhHHHHH
Q 014923 251 LKMIFAPSTIAAIIGFVIGTISPFRKVIVGESAPLRVLDSSAALVGEAAIPAMTLVIGANLLSGLKRSGVGVSLIMGIIA 330 (416)
Q Consensus 251 l~~~~~Pp~ia~ilg~ivg~ippLk~l~~~~~apL~~i~ds~~~lG~a~IP~~llvLGa~L~~g~~~s~l~~~~iv~iv~ 330 (416)
+-+.+|+.+|.++|+++.... = +.=.++.++++++|++++|+.++.+|+.|++...+ .. +......+
T Consensus 169 -~~~~nP~iia~~~gl~~~l~~--------i-~lP~~i~~~l~~lg~~~~PlaL~~iG~~L~~~~~~--~~-~~~~~~~~ 235 (314)
T PRK09903 169 -SAAKEPVVWAPVLATILVLVG--------V-KIPAAWDPTFNLIAKANSGVAVFAAGLTLAAHKFE--FS-AEIAYNTF 235 (314)
T ss_pred -HHHhchHHHHHHHHHHHHHcC--------C-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc--cc-HHHHHHHH
Confidence 335679999999999975421 1 11269999999999999999999999999874322 22 34556788
Q ss_pred HHHHHHhHHHHHHHHHHHHhCCCCCChHHHHHHHhhccCchhHHHHHHHhhhccCchhhHHHHHHHHHHHHHHHHHHHHH
Q 014923 331 IRYILLPLLGIVIVKAAYRFGFIGSDSLYQFILLLQYAVPPALAVGTIIQLFETSESECSVILLWTYAVAAFALTLWITF 410 (416)
Q Consensus 331 ~RliilPiigv~iv~~~~k~g~~~~Dpl~~fVllL~~~~P~A~~l~~itql~~~~e~e~S~ilfwqY~~~~vslt~~~t~ 410 (416)
.|+++.|++..++... .|+ |+...=+++++.++|+|.+-..+++-||...+.++...+.+-.++.+++|+|+.+
T Consensus 236 ~Kli~~P~i~~~~~~~---~~l---~~~~~~v~vl~aa~P~a~~~~i~A~~y~~~~~~aa~~v~~sTlls~iTlpl~~~l 309 (314)
T PRK09903 236 LKLILMPLALLLVGMA---CHL---NSEHLQMMVLAGALPPAFSGIIIASRFNVYTRTGTASLAVSVLGFVVTAPLWIYV 309 (314)
T ss_pred HHHHHHHHHHHHHHHH---cCC---CcHHHHHHHHHHcccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999988665543 233 6777789999999999999999999998877778888999999999999999986
Q ss_pred HHHhc
Q 014923 411 YIWLL 415 (416)
Q Consensus 411 ~l~l~ 415 (416)
++++
T Consensus 310 -~~~~ 313 (314)
T PRK09903 310 -SRLV 313 (314)
T ss_pred -HHhh
Confidence 4544
No 6
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=97.40 E-value=0.0011 Score=65.56 Aligned_cols=110 Identities=14% Similarity=0.094 Sum_probs=89.1
Q ss_pred chhhHHHHHhhhhccc-CCccCCCCchhhHHHHHHHHHHHhHHHHHHHHHHHHhCCCCCChHHHHHHHhhccCchhHHHH
Q 014923 298 AAIPAMTLVIGANLLS-GLKRSGVGVSLIMGIIAIRYILLPLLGIVIVKAAYRFGFIGSDSLYQFILLLQYAVPPALAVG 376 (416)
Q Consensus 298 a~IP~~llvLGa~L~~-g~~~s~l~~~~iv~iv~~RliilPiigv~iv~~~~k~g~~~~Dpl~~fVllL~~~~P~A~~l~ 376 (416)
..+..+++.+|.++.. ..++....+|.+....+.|++++|+++.++.+.. +.||.+...+++..++|+|.+--
T Consensus 12 ~~l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~~~~vi~Plla~~l~~~~------~l~~~~~~glvL~~~~P~~~~s~ 85 (286)
T TIGR00841 12 ILLFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLTGFLLAKVF------KLPPELAVGVLIVGCCPGGTASN 85 (286)
T ss_pred HHHHHHHHHccCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHh------CCCHHHHHHHHheeeCCCchHHH
Confidence 3477888999999874 2223333557788888899999999998887633 46899999999999999999999
Q ss_pred HHHhhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 014923 377 TIIQLFETSESECSVILLWTYAVAAFALTLWITFYIW 413 (416)
Q Consensus 377 ~itql~~~~e~e~S~ilfwqY~~~~vslt~~~t~~l~ 413 (416)
.+|+.+|...+..+.....+-+++.+++|+|+.++..
T Consensus 86 v~t~~~~gn~~la~~~~~~stlls~vt~Pl~l~~~~~ 122 (286)
T TIGR00841 86 VFTYLLKGDMALSISMTTCSTLLALGMMPLLLYIYAK 122 (286)
T ss_pred HHHHHhCCCHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999996655556777779999999999999988865
No 7
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes. They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.
Probab=93.59 E-value=0.43 Score=44.08 Aligned_cols=108 Identities=21% Similarity=0.233 Sum_probs=73.8
Q ss_pred hhHHHHHhhhhccc-CCccCCCCchhhHHHHHHHHHHHhHHHHHHHHHHHHhCCCCCChHHHHHHHhhccCchhHHHHHH
Q 014923 300 IPAMTLVIGANLLS-GLKRSGVGVSLIMGIIAIRYILLPLLGIVIVKAAYRFGFIGSDSLYQFILLLQYAVPPALAVGTI 378 (416)
Q Consensus 300 IP~~llvLGa~L~~-g~~~s~l~~~~iv~iv~~RliilPiigv~iv~~~~k~g~~~~Dpl~~fVllL~~~~P~A~~l~~i 378 (416)
+-.+++.+|-++.. -.+...-.+|.++...+..++++|+++.++.... .+.||-+..-+++..+.|.+...-.+
T Consensus 4 l~~~mf~~gl~~~~~~l~~~~~~p~~l~~~l~~~~~i~Plla~~l~~~~-----~~~~~~~~~Gl~l~~~~P~~~~s~~~ 78 (187)
T PF01758_consen 4 LFLMMFSMGLSLTFEDLRRVLRRPKLLLIGLLAQFLIMPLLAFGLAWLL-----LPLSPALALGLLLVAACPGGPASNVF 78 (187)
T ss_dssp HHHHHHHHHHC--GGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHH-HH-----TT--HHHHHHHHHHHHS-B-THHHHH
T ss_pred hhHHHHHhhhcccHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHH-----hcCCHHHHHHHHHHhcCCcHHHHHHH
Confidence 44566677777642 1222223467888888999999999999998433 36789999999999999999998888
Q ss_pred HhhhccCchhhHHHH-HHHHHHHHHHHHHHHHHHHH
Q 014923 379 IQLFETSESECSVIL-LWTYAVAAFALTLWITFYIW 413 (416)
Q Consensus 379 tql~~~~e~e~S~il-fwqY~~~~vslt~~~t~~l~ 413 (416)
|.+.| |+.+.|..+ ...-..+.+.+|+|..++..
T Consensus 79 t~l~~-Gd~~ls~~lt~istll~~~~~P~~~~l~~~ 113 (187)
T PF01758_consen 79 TYLAG-GDVALSVSLTLISTLLAPFLMPLLLYLLSG 113 (187)
T ss_dssp HHHTT---HHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHhC-CCcccccceeeHHHHHHHHHHHHHHHHHhc
Confidence 88874 445544443 47779999999999887753
No 8
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=93.41 E-value=1.2 Score=44.00 Aligned_cols=132 Identities=14% Similarity=0.146 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCChhHHhh---hhhhhHhhhhhhHHHHhhccccccccc-hhhhHHHHHHHHHHHH
Q 014923 10 ALMPILKVLLVTALGLVLAIDRIDLLGHSVTHS---LNNLVFYVFNPALIGSNLAETITYQSL-ISLWFMPVNILLSFLI 85 (416)
Q Consensus 10 a~~pvlkvlli~~~G~~lA~~~~~iL~~~~~k~---ls~lv~~vflP~LiFskla~~it~~~l-~~~w~iPvn~ll~~~i 85 (416)
..+ ..-+++-..+|..+. |. .++ .+|. ++.+... ++=++++.-++.+.. ++ .+.|-+-+-.++...+
T Consensus 137 ~~~-~~~v~vPl~lG~~~r--~~--~p~-~~~~~~~~~~~s~~-~l~liv~~~~~~~~~--~i~~~~~~~~~~~~ll~~~ 207 (286)
T TIGR00841 137 GLS-LVAVLIPVSIGMLVK--HK--LPQ-IAKIILKVGLISVF-LLSVIIAVVGGINVE--NLATIGPLLLLVGILLPLA 207 (286)
T ss_pred HHH-HHHHHHHHHHHHHHH--HH--hHH-HHHHHHhCchHHHH-HHHHHHHHHHHhhHH--HHHHhhHHHHHHHHHHHHH
Confidence 344 677788889998776 32 122 2222 3333222 222444444443321 12 2233344446777899
Q ss_pred HHHHHHHHHHHhcCCCCccCeeeEEeecCCcchhHHHHHHHhhhcCCCCCCCchhhcchhhHHHHHHH-HHHHHHh
Q 014923 86 GSALAWILIKITRTPPHLQGLVIGCCSAGNMGNLLLIIVPAVCEESNSPFGDTSVCSSYGKAYASLSM-VGAIYIW 160 (416)
Q Consensus 86 G~~lg~~v~~i~~~P~~~r~~~i~~~~fgN~g~LPl~lv~sl~~~~~~pFg~~~~~~~~G~aYv~~~~-~g~i~~w 160 (416)
|+.+||.+.|.+|.+++.|.-+...++..|.+ +-+++..+. |+++ ...-...|...+. .+.++.+
T Consensus 208 ~~~~g~~~a~~~~l~~~~~~t~~~~~g~qN~~-lal~la~~~-------f~~~--~a~~~~~~~v~~~~~~~~~a~ 273 (286)
T TIGR00841 208 GFLLGYLLAKLAGLPWARCRTISIEVGMQNSQ-LCSTIAQLS-------FSPE--VAVPSAIFPLIYALFQLAFAL 273 (286)
T ss_pred HHHHHHHHHHHhCCCHhhheeeeeeeecccHH-HHHHHHHHh-------cChH--HHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998999999999999988 444433332 3322 2333445655555 6666543
No 9
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=92.08 E-value=1.1 Score=45.17 Aligned_cols=110 Identities=18% Similarity=0.189 Sum_probs=82.8
Q ss_pred cchhhHHHHHhhhhccc-CCccCCCCchhhHHHHHHHHHHHhHHHHHHHHHHHHhCCCCCChHHHHHHHhhccCchhHHH
Q 014923 297 EAAIPAMTLVIGANLLS-GLKRSGVGVSLIMGIIAIRYILLPLLGIVIVKAAYRFGFIGSDSLYQFILLLQYAVPPALAV 375 (416)
Q Consensus 297 ~a~IP~~llvLGa~L~~-g~~~s~l~~~~iv~iv~~RliilPiigv~iv~~~~k~g~~~~Dpl~~fVllL~~~~P~A~~l 375 (416)
...+-.+++.+|.+|.+ -.+..-.++|..+...+.-++++|++|+++.+.. +-||-..-=+++..+.|..++.
T Consensus 41 ~~~l~lImf~mGl~Ls~~d~~~~~~~p~~vligl~~qfvlmPlla~~~~~~~------~l~~~l~~Gl~ll~~~Pggv~S 114 (319)
T COG0385 41 PIALALIMFGMGLTLSREDFLAGLKHPRLVLIGLAAQFVLMPLLALLLAKLF------PLPPELAVGLLLLGCCPGGVAS 114 (319)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHhHHheeeCCCchhH
Confidence 34455778888999875 1122334678889999999999999999999854 4588888888899999999999
Q ss_pred HHHHhhhccCchhhHHHH-HHHHHHHHHHHHHHHHHHHH
Q 014923 376 GTIIQLFETSESECSVIL-LWTYAVAAFALTLWITFYIW 413 (416)
Q Consensus 376 ~~itql~~~~e~e~S~il-fwqY~~~~vslt~~~t~~l~ 413 (416)
-.+|++. .|+--.|+.. .-+-+++.+..|+++.+|+.
T Consensus 115 ~~~t~lA-kGnValsV~~tsvStll~~f~tPllv~l~~~ 152 (319)
T COG0385 115 NAMTYLA-KGNVALSVCSTSVSTLLGPFLTPLLVGLLAG 152 (319)
T ss_pred HHHHHHh-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8889998 4433333333 36777888888888887763
No 10
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=91.28 E-value=3.8 Score=41.51 Aligned_cols=143 Identities=15% Similarity=0.048 Sum_probs=92.1
Q ss_pred HHHHHHHHHHhcchhhhhhhccCCCchhhH-HHHHHHhhcchhhHHHHHhhhhccc-CCccCCCCchhhHHHHHHHHHHH
Q 014923 259 TIAAIIGFVIGTISPFRKVIVGESAPLRVL-DSSAALVGEAAIPAMTLVIGANLLS-GLKRSGVGVSLIMGIIAIRYILL 336 (416)
Q Consensus 259 ~ia~ilg~ivg~ippLk~l~~~~~apL~~i-~ds~~~lG~a~IP~~llvLGa~L~~-g~~~s~l~~~~iv~iv~~Rliil 336 (416)
..++++|+++|..-|-.. .++... .+.+..--+...-.+++.+|-++.. -.+..--.+|.+....+.-++++
T Consensus 13 ~~~~i~~~~~g~~~P~~~------~~~~~~~~~~~~~~~~~~l~~mmf~mgl~L~~~df~~~~~~pk~~~~~~~~qfvi~ 86 (328)
T TIGR00832 13 FLAIAAGVGLGVLFPSVF------QALAALEVATVSIPIAIGLILMMYPPLAKVDYSALGDVFKDPKGLILSLFINWIIG 86 (328)
T ss_pred HHHHHHHHHHHHhccccH------HHHHHHHhhhhHHHHHHHHHHHHHHhhhcCCHHHHHHHHcCchHHHHHHHHHHHHH
Confidence 466777888887544311 111100 0111111122223467777788752 22333345688999999999999
Q ss_pred hHHHHHHHHHHHHhCCCCCChHHHHHHHhhccCchhHHHHHHHhhhccCchhhHHHHH-HHHHHHHHHHHHHHHHHHH
Q 014923 337 PLLGIVIVKAAYRFGFIGSDSLYQFILLLQYAVPPALAVGTIIQLFETSESECSVILL-WTYAVAAFALTLWITFYIW 413 (416)
Q Consensus 337 Piigv~iv~~~~k~g~~~~Dpl~~fVllL~~~~P~A~~l~~itql~~~~e~e~S~ilf-wqY~~~~vslt~~~t~~l~ 413 (416)
|+++.++.+.. .+.+|-+..=+++..+.|.+..-..+|.+. .|+...|..+- ..=.++.+..|.+..+|+.
T Consensus 87 Plla~~l~~l~-----~~~~p~l~~GliLv~~~Pgg~~S~v~T~lA-kGnvalsv~lt~~stLl~~~~~P~l~~ll~~ 158 (328)
T TIGR00832 87 PFLMFLLAWLF-----LRDLFEYIAGLILLGLARCIAMVFVWNQLA-KGDPEYTLVLVAVNSLFQVFLYAPLAWLLLG 158 (328)
T ss_pred HHHHHHHHHHH-----cCCCHHHHHHHHHHHhcchHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999988753 255778999999999999999877778877 55555555553 6666667777777766653
No 11
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=89.34 E-value=3.4 Score=41.50 Aligned_cols=141 Identities=15% Similarity=0.247 Sum_probs=93.9
Q ss_pred HHHHHHHHHHhcchhhhhhhccCCCchhhHHHHHHHhhcchhhHHHHHhhhhccc-CCccCCCCchhhHHHHHHHHHHHh
Q 014923 259 TIAAIIGFVIGTISPFRKVIVGESAPLRVLDSSAALVGEAAIPAMTLVIGANLLS-GLKRSGVGVSLIMGIIAIRYILLP 337 (416)
Q Consensus 259 ~ia~ilg~ivg~ippLk~l~~~~~apL~~i~ds~~~lG~a~IP~~llvLGa~L~~-g~~~s~l~~~~iv~iv~~RliilP 337 (416)
.++.++++..|..=|-... ....+.. ++.....|..+.++-|.+|.. ..+..-..+|........=+++.|
T Consensus 4 l~~l~~ai~la~~~P~~g~------~~~~~~~--~~~~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl~P 75 (313)
T PF13593_consen 4 LLGLLLAILLAYLFPAPGA------AGGVIKP--EYVIKYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVLFP 75 (313)
T ss_pred HHHHHHHHHHHHHcCcccc------cCCccch--hhhHHHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 4566666666654443211 1122210 122233488899999988863 233344566888888999999999
Q ss_pred HHHHHHHHHHHHhCCCCCChHHHHHHHhhccCchhHHHH-HHHhhhccCchhhHHHH-HHHHHHHHHHHHHHHHHHH
Q 014923 338 LLGIVIVKAAYRFGFIGSDSLYQFILLLQYAVPPALAVG-TIIQLFETSESECSVIL-LWTYAVAAFALTLWITFYI 412 (416)
Q Consensus 338 iigv~iv~~~~k~g~~~~Dpl~~fVllL~~~~P~A~~l~-~itql~~~~e~e~S~il-fwqY~~~~vslt~~~t~~l 412 (416)
+++.++...... + .|+-+..=+++..|+||.++.+ .+|+..| |....+.+. .-+-.+.++..|+|+..++
T Consensus 76 ll~~~~~~l~~~--~--~~~~l~~Gl~~~~~lPtTv~S~v~~T~~Ag-GN~a~Al~~~~~snllgv~ltP~ll~l~l 147 (313)
T PF13593_consen 76 LLGFGLSRLFPA--F--LPPELALGLLILACLPTTVSSSVVLTRLAG-GNVALALFNAVLSNLLGVFLTPLLLLLLL 147 (313)
T ss_pred HHHHHHHHHhhc--c--CCHHHHHHHHHHhhCCchhhHHHHHHHHcC-CCHHHHHHHHHHHhhhhHhHHHHHHHHHh
Confidence 999999887652 3 3555888899999999998875 5677763 333333222 2678888999999998876
No 12
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=79.76 E-value=7 Score=39.54 Aligned_cols=45 Identities=16% Similarity=0.131 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCeeeEEeecCCcch
Q 014923 74 FMPVNILLSFLIGSALAWILIKITRTPPHLQGLVIGCCSAGNMGN 118 (416)
Q Consensus 74 ~iPvn~ll~~~iG~~lg~~v~~i~~~P~~~r~~~i~~~~fgN~g~ 118 (416)
.+-+.+.++..+|+.+||...|.++.++..|.-+..|++-.|++.
T Consensus 224 ~v~~~v~~~n~lg~~~gy~~ar~~g~~~a~~iti~ie~g~qn~~l 268 (319)
T COG0385 224 LIFVAVILHNLLGLLLGYFGARLLGFDKADEITIAIEGGMQNLGL 268 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCChhheeeEEEeeccccHHH
Confidence 566777888899999999999999999999999999999999864
No 13
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=78.58 E-value=4.1 Score=41.24 Aligned_cols=107 Identities=13% Similarity=0.068 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHhccC-----CCCChhHHhhhhhhhHhhhhhhHHHHhhcccc--ccccchhhhHHHHHHHHHHHHHHHH
Q 014923 17 VLLVTALGLVLAIDRI-----DLLGHSVTHSLNNLVFYVFNPALIGSNLAETI--TYQSLISLWFMPVNILLSFLIGSAL 89 (416)
Q Consensus 17 vlli~~~G~~lA~~~~-----~iL~~~~~k~ls~lv~~vflP~LiFskla~~i--t~~~l~~~w~iPvn~ll~~~iG~~l 89 (416)
+++-...|..+.+-.. +...++.++.++.+.. +++=..+|...+.+- -.++-.+++.+-.-+++.+.+|+.+
T Consensus 184 v~lPlvlG~~lr~~~~~~~~~~~~~~~~~~~~~~~~~-l~l~~iv~~~~~~~~~~i~~~~~~i~~~~~~v~l~~~~~~~l 262 (328)
T TIGR00832 184 LGIPLIAGILTRYWLLKRKGREWYEKVFLPKISPWSL-IALLFTIVLLFAFQGETIIELPLDIALIAIPLLIYFYIMFFL 262 (328)
T ss_pred HHHHHHHHHHHHHHHHHccchHHHHHHHHhhcchHHH-HHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 3444566765553111 1222233444554443 222333444444332 1122222333333466788999999
Q ss_pred HHHHHHHhcCCCCccCeeeEEeecCCcchhHHHHHHHh
Q 014923 90 AWILIKITRTPPHLQGLVIGCCSAGNMGNLLLIIVPAV 127 (416)
Q Consensus 90 g~~v~~i~~~P~~~r~~~i~~~~fgN~g~LPl~lv~sl 127 (416)
||.+.|.+|.+++.|.-+..+++..|. .+++.-|.
T Consensus 263 g~~~~r~~~l~~~~~~a~~~e~g~qN~---~lai~lA~ 297 (328)
T TIGR00832 263 TFALAKKLGLPYSITAPAAFTGASNNF---ELAIAVAI 297 (328)
T ss_pred HHHHHHHhCcChhhhhhheehhhhhhH---HHHHHHHH
Confidence 999999999999999999999888775 45555555
No 14
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=67.89 E-value=15 Score=38.00 Aligned_cols=84 Identities=18% Similarity=0.250 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHhccCCCCChhHHhhhhhhhHhhhhhhHHHHhhccccccccchhhh-------HHHHHHHHHHHHHHHH
Q 014923 17 VLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLW-------FMPVNILLSFLIGSAL 89 (416)
Q Consensus 17 vlli~~~G~~lA~~~~~iL~~~~~k~ls~lv~~vflP~LiFskla~~it~~~l~~~w-------~iPvn~ll~~~iG~~l 89 (416)
++++...|..++ ..|+++.+....+.+.+.+.++|.-++==+=+ -|+|++| .+-+-..+.+++|..+
T Consensus 28 ~vl~~~~~~~ls--nlgli~~p~~s~~y~~v~~~~vPlai~LlLl~----~Dlr~i~~~g~~~l~~F~~~~~g~viG~~v 101 (378)
T PF05684_consen 28 AVLCYLLGMLLS--NLGLIDSPASSPVYDFVWTYLVPLAIPLLLLS----ADLRRILRLGGRLLLAFLIGAVGTVIGAVV 101 (378)
T ss_pred HHHHHHHHHHHH--HCCCcCCCCcchHHHHHHHHHHHHHHHHHHHH----ccHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 567788888999 89999666667788888888888776654443 3555555 4444456667888888
Q ss_pred HHHHHHHhcCCCCccCe
Q 014923 90 AWILIKITRTPPHLQGL 106 (416)
Q Consensus 90 g~~v~~i~~~P~~~r~~ 106 (416)
++.+.+-.--|..|+..
T Consensus 102 a~~l~~~~l~~~~wk~a 118 (378)
T PF05684_consen 102 AFLLFGGFLGPEGWKIA 118 (378)
T ss_pred HHHHHhhcccchHHHHH
Confidence 88877766445555543
No 15
>PRK11339 abgT putative aminobenzoyl-glutamate transporter; Provisional
Probab=48.46 E-value=48 Score=35.73 Aligned_cols=79 Identities=18% Similarity=0.129 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCChhHHhhhhhhhHhhhhhhHHHHhhccccccccchhhhHHHHHHHHHH------HHH
Q 014923 13 PILKVLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLWFMPVNILLSF------LIG 86 (416)
Q Consensus 13 pvlkvlli~~~G~~lA~~~~~iL~~~~~k~ls~lv~~vflP~LiFskla~~it~~~l~~~w~iPvn~ll~~------~iG 86 (416)
|-+.+++++.+|.-.|. |.|.++.-.||.+.+.-=...+|..+|.-+-.++- +|.--+-++|+...+.. ..|
T Consensus 89 ~pLG~vlv~mlgvgvae-~sG~i~a~i~~~v~~~p~~~it~ivvf~gv~s~~a-sdaGyVvl~PL~a~if~a~Gr~PlaG 166 (508)
T PRK11339 89 APLGAILALVLGAGLAE-RVGLLPALMVKMASHVNARYASYMVLFIAFFSHIS-SDAALVIMPPMGALIFLAVGRHPVAG 166 (508)
T ss_pred CcHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHcCCChHHH
Confidence 55778888888877774 88999999999999988888888887765555543 22222667899777766 566
Q ss_pred HHHHHHH
Q 014923 87 SALAWIL 93 (416)
Q Consensus 87 ~~lg~~v 93 (416)
.+.++..
T Consensus 167 ia~~fag 173 (508)
T PRK11339 167 LLAAIAG 173 (508)
T ss_pred HHHHHHH
Confidence 6666653
No 16
>PRK11677 hypothetical protein; Provisional
Probab=46.59 E-value=21 Score=31.58 Aligned_cols=25 Identities=8% Similarity=0.434 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 014923 73 WFMPVNILLSFLIGSALAWILIKITRTP 100 (416)
Q Consensus 73 w~iPvn~ll~~~iG~~lg~~v~~i~~~P 100 (416)
|++++ +.+++|.++|+++.|++...
T Consensus 3 W~~a~---i~livG~iiG~~~~R~~~~~ 27 (134)
T PRK11677 3 WEYAL---IGLVVGIIIGAVAMRFGNRK 27 (134)
T ss_pred HHHHH---HHHHHHHHHHHHHHhhccch
Confidence 65554 88899999999999986544
No 17
>PF03806 ABG_transport: AbgT putative transporter family; InterPro: IPR004697 The p-aminobenzoyl-glutamate transporter family includes two putative transporters, the AbgT protein of Escherichia coli and MtrF of Neisseria gonorrhoeae. AbgT expression is apparently cryptic in wild type cells, but when present on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs []. p-Aminobenzoate is a constituent of, and a precursor for, the biosynthesis of folic acid. It is not currently known if AbgT is naturally involved in transporting p-aminobenzoyl-glutamate, or if it only becomes involved when under altered regulation. MtrF is an inner membrane protein which, together with the MtrCDE efflux pump, is required for high-level resistance to hydrophobic antimicrobial agents in N. gonorrhoeae []. Its role in this process is not known, but it has been suggested that it may be a component of the efflux pump which is dispensible for basal activity, but required for high-level activity [].
Probab=45.81 E-value=1.9e+02 Score=31.25 Aligned_cols=145 Identities=18% Similarity=0.154 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCChhHHhhhhhhhHhhhhhhHHHHhhccccccccchhhhHHHHHHHHHH------HHH
Q 014923 13 PILKVLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLWFMPVNILLSF------LIG 86 (416)
Q Consensus 13 pvlkvlli~~~G~~lA~~~~~iL~~~~~k~ls~lv~~vflP~LiFskla~~it~~~l~~~w~iPvn~ll~~------~iG 86 (416)
|-+.+++++.+|.-.| +|.|+++.-.||.+.+.-=.+.+|.++|.-+-.++-.|- --+-.+|+..++-. ..|
T Consensus 79 ~PLG~Vlv~mlgvgvA-E~sGll~a~~r~~~~~~p~~~vt~~v~f~Gi~sniasDA-g~Vvl~PL~a~iF~~~GRhPlaG 156 (502)
T PF03806_consen 79 PPLGLVLVMMLGVGVA-EKSGLLSALMRKLVLKAPPRLVTPAVVFVGIMSNIASDA-GYVVLPPLAAMIFAAVGRHPLAG 156 (502)
T ss_pred CcHHHHHHHHHHHHHH-HHhchHHHHHHHHhccCCcchhhHHHHHHHHHhcccccc-eeEeHHhhHHHHHHHcCCChHHH
Confidence 5577888888887777 488999999999999999999999999999988885433 23345888666554 678
Q ss_pred HHHHHHHHHHhcCCCCccCeeeEEeecCCcchhHHHHHHHhhhcCCCCCCCchhhcchhhHHHHHHH--HHHHHHhhhhh
Q 014923 87 SALAWILIKITRTPPHLQGLVIGCCSAGNMGNLLLIIVPAVCEESNSPFGDTSVCSSYGKAYASLSM--VGAIYIWTYVY 164 (416)
Q Consensus 87 ~~lg~~v~~i~~~P~~~r~~~i~~~~fgN~g~LPl~lv~sl~~~~~~pFg~~~~~~~~G~aYv~~~~--~g~i~~wt~~~ 164 (416)
...||.-+- ++.-|+-..+-.-.+--.+.++-++. .+++-..+-...=|..+.+ +-++..|-..-
T Consensus 157 i~~afa~vs---------~GfsAnl~i~~~D~ll~giT~~Aa~~----idp~~~v~p~~N~yF~~aSt~~l~~v~~~vt~ 223 (502)
T PF03806_consen 157 IAAAFAGVS---------GGFSANLLIGSTDALLAGITTSAAQI----IDPSYTVNPLMNYYFMIASTFVLTIVGTWVTE 223 (502)
T ss_pred HHHHHHHHh---------ccccceeeccchhHHHHHhHHHHHHh----cCCCceechHHHHHHHHHHHHHHHHHHHHHhh
Confidence 888887542 23323322233333334444444432 1111112223334444443 55555665666
Q ss_pred hhhhhccc
Q 014923 165 YVMSLYLN 172 (416)
Q Consensus 165 ~ll~~~~~ 172 (416)
+.++++-.
T Consensus 224 kivePrl~ 231 (502)
T PF03806_consen 224 KIVEPRLG 231 (502)
T ss_pred hhhccccc
Confidence 67766543
No 18
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=44.24 E-value=2.3e+02 Score=28.43 Aligned_cols=106 Identities=24% Similarity=0.240 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCChhH---HhhhhhhhHhhhhhhHHHHhhcccccc---ccc--hhhhHHHHHHHHHHH
Q 014923 13 PILKVLLVTALGLVLAIDRIDLLGHSV---THSLNNLVFYVFNPALIGSNLAETITY---QSL--ISLWFMPVNILLSFL 84 (416)
Q Consensus 13 pvlkvlli~~~G~~lA~~~~~iL~~~~---~k~ls~lv~~vflP~LiFskla~~it~---~~l--~~~w~iPvn~ll~~~ 84 (416)
=++++++-..+|-.+. | .+.+.. +|.++++ =...+-.++++....+..- +++ .++..+-.-.+....
T Consensus 163 L~~~vllP~~~Gq~~r--~--~~~~~~~~~~~~~~~~-~~~~ll~iv~~~fs~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 237 (313)
T PF13593_consen 163 LVLTVLLPLVLGQLLR--R--WVPKWVARHKKPLSLL-SQLALLLIVYSAFSSAFAQGAWHSVSAAALALIVAVSLLLLL 237 (313)
T ss_pred HHHHHHHHHHHHHHHH--H--HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhchhhhCCHHHHHHHHHHHHHHHH
Confidence 3456666677786554 2 233332 2223222 3344456666666665321 122 222333333555668
Q ss_pred HHHHHHHHHHHHhcCCCCccCeeeEEeecCCcchhHHHHHHH
Q 014923 85 IGSALAWILIKITRTPPHLQGLVIGCCSAGNMGNLLLIIVPA 126 (416)
Q Consensus 85 iG~~lg~~v~~i~~~P~~~r~~~i~~~~fgN~g~LPl~lv~s 126 (416)
+++.++|...|.++.+++.|--++.||+ -.|+|+++.-+
T Consensus 238 ~~l~~~~~~~r~~~~~~~d~iA~~F~gs---~Ksl~~gvpl~ 276 (313)
T PF13593_consen 238 VVLVLGWLAARLLGFSRPDRIAVLFCGS---QKSLALGVPLA 276 (313)
T ss_pred HHHHHHHHHHhhcCCChhhEEEEEEEcC---cCcchhHHHHH
Confidence 8889999999999999998877777766 44566666433
No 19
>PF09512 ThiW: Thiamine-precursor transporter protein (ThiW); InterPro: IPR012652 Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved, to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.
Probab=43.88 E-value=40 Score=30.46 Aligned_cols=85 Identities=26% Similarity=0.398 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHH---------HHHHHHHhccCCCCChhHHh----hhhhhhHhhhhhhHHHHhhccccccccchhhhHH
Q 014923 9 VALMPILKVLLVT---------ALGLVLAIDRIDLLGHSVTH----SLNNLVFYVFNPALIGSNLAETITYQSLISLWFM 75 (416)
Q Consensus 9 ~a~~pvlkvlli~---------~~G~~lA~~~~~iL~~~~~k----~ls~lv~~vflP~LiFskla~~it~~~l~~~w~i 75 (416)
+-+-+++|.++-+ ..|.+++ |++=+.++| .+..++-+-..=+++-.-+++-+.-++...+.++
T Consensus 51 Af~~sliR~~lg~Gt~lAfPGsm~GA~la----Gllyr~~~k~~~a~lGEviGTGiIGal~sypva~~~~g~~~~~~~~v 126 (150)
T PF09512_consen 51 AFITSLIRNLLGTGTLLAFPGSMFGALLA----GLLYRKTKKLWAAALGEVIGTGIIGALLSYPVAKLFMGKEAALFFFV 126 (150)
T ss_pred HHHHHHHHHHhCCCCHHHhccchHHHHHH----HHHHHHhCcchHHHHHHHHhhHHHHHHHHHHHHHHHhCCchhhhhhH
Confidence 3345666666633 3577777 666666666 3566677777778888888888877777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q 014923 76 PVNILLSFLIGSALAWILIKITR 98 (416)
Q Consensus 76 Pvn~ll~~~iG~~lg~~v~~i~~ 98 (416)
|- .+.++..|.++||++.+..|
T Consensus 127 ~~-F~~St~~Ga~ig~~~l~~L~ 148 (150)
T PF09512_consen 127 PP-FLISTLIGAIIGYILLKALK 148 (150)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHh
Confidence 76 78899999999999998875
No 20
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=41.79 E-value=64 Score=33.11 Aligned_cols=82 Identities=15% Similarity=0.086 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHhccCCCCChhHHhhhhhhh---HhhhhhhHHHHhhccccccccchhhhHHHHH-HHHHHHHHH-HHHHH
Q 014923 18 LLVTALGLVLAIDRIDLLGHSVTHSLNNLV---FYVFNPALIGSNLAETITYQSLISLWFMPVN-ILLSFLIGS-ALAWI 92 (416)
Q Consensus 18 lli~~~G~~lA~~~~~iL~~~~~k~ls~lv---~~vflP~LiFskla~~it~~~l~~~w~iPvn-~ll~~~iG~-~lg~~ 92 (416)
..+...|.++. ..|+++++.+...++.. ...+++.+++.==....+++++.+.-=.|.- +.+...+|+ +.+++
T Consensus 208 v~mII~~vi~k--~~gllp~~i~~~a~~~~~F~~~~lt~~ll~giGla~t~l~~L~~a~t~~~vviiv~~Vlg~ii~s~l 285 (347)
T TIGR00783 208 AFMILIAAALK--AFGLVPKEIEEGAKMLSQFISKNLTWPLMVGVGVSYIDLDDLVAALSWQFVVICLSVVVAMILGGAF 285 (347)
T ss_pred HHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCHHHHHHHhchhHhhhHHHHHHHHHHHHHH
Confidence 44556677777 88999998776655544 4457776665211234688888876312222 222334454 44568
Q ss_pred HHHHhcCCC
Q 014923 93 LIKITRTPP 101 (416)
Q Consensus 93 v~~i~~~P~ 101 (416)
+.|+++.=+
T Consensus 286 vGKllG~YP 294 (347)
T TIGR00783 286 LGKLMGMYP 294 (347)
T ss_pred HHHHhCCCh
Confidence 888887765
No 21
>KOG2262 consensus Sexual differentiation process protein ISP4 [Signal transduction mechanisms]
Probab=38.88 E-value=6.6 Score=43.19 Aligned_cols=100 Identities=16% Similarity=0.285 Sum_probs=65.5
Q ss_pred HhhccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCccCeeeEEeecCCcchhHHHHHHHhhhcCCCCC
Q 014923 58 SNLAETITYQSLISLWFMPVNILLSFLIGSALAWILIKITRT--PPHLQGLVIGCCSAGNMGNLLLIIVPAVCEESNSPF 135 (416)
Q Consensus 58 skla~~it~~~l~~~w~iPvn~ll~~~iG~~lg~~v~~i~~~--P~~~r~~~i~~~~fgN~g~LPl~lv~sl~~~~~~pF 135 (416)
+||=|. .++.-+||+.-+ .++...++...+.-.+. --++. +++.||+++=...+|+.+++|..++ . .
T Consensus 432 trlMkk--YKeVP~WWf~~i-----li~s~~l~~~~~~~~~~~~q~PwW-g~~va~~ia~vf~iPigii~AtTNq--~-~ 500 (761)
T KOG2262|consen 432 TRLMKK--YKEVPDWWFLAI-----LIVSLGLGLAACEGYKTQVQLPWW-GLLVACAIAFVFTIPIGIIQATTNQ--T-P 500 (761)
T ss_pred HHHHHH--hccCcHHHHHHH-----HHHHHHHHhhheeeecccccCchH-HHHHHHHHHHHHhccHHHhhhhccC--C-c
Confidence 445444 788899999765 22344445555555444 33344 4556677888899999999999764 1 2
Q ss_pred CCchhhcchhhHHHHHHH-HHHHHHhhhhhhhhhh
Q 014923 136 GDTSVCSSYGKAYASLSM-VGAIYIWTYVYYVMSL 169 (416)
Q Consensus 136 g~~~~~~~~G~aYv~~~~-~g~i~~wt~~~~ll~~ 169 (416)
|- +.-.+.=+.|+.=.. +..++.-+|||.-|+.
T Consensus 501 GL-NiitE~i~Gy~~PgrPiAn~~FK~yGyism~Q 534 (761)
T KOG2262|consen 501 GL-NIITEYIIGYIYPGRPIANLCFKTYGYISMTQ 534 (761)
T ss_pred cH-HHHHHHHHHhhcCCchHHHHHHHHhchhhHHH
Confidence 21 224455566666667 8899999999987754
No 22
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=37.60 E-value=79 Score=31.98 Aligned_cols=103 Identities=17% Similarity=0.147 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCChhHHhhhhhhhHhhhhhhHHHHhhccccccccchhhhHHHH-HHHHHHHHHHHHHH
Q 014923 13 PILKVLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLWFMPV-NILLSFLIGSALAW 91 (416)
Q Consensus 13 pvlkvlli~~~G~~lA~~~~~iL~~~~~k~ls~lv~~vflP~LiFskla~~it~~~l~~~w~iPv-n~ll~~~iG~~lg~ 91 (416)
+++-.++-..+|.++. | ++++.|+.+++=+-. ..|-.+ --++.++|++++.+.++--+ -.++...+...+++
T Consensus 165 ~lv~lilpILiGmilG----N-ld~~~~~~l~~Gi~f-~I~f~~-f~LG~~lnl~~I~~~G~~GIlL~v~vv~~t~~~~~ 237 (312)
T PRK12460 165 ALVAALLPLVLGMILG----N-LDPDMRKFLTKGGPL-LIPFFA-FALGAGINLSMLLQAGLAGILLGVLVTIVTGFFNI 237 (312)
T ss_pred HHHHHHHHHHHHHHHh----c-cchhhHHHHhccceE-eHHHHH-HHhcCCeeHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence 4456778888998888 5 777777777665332 333333 35899999999999875433 33456678888888
Q ss_pred HHHHHhcCCCCccCeeeEEeecCCcchhHHHHH
Q 014923 92 ILIKITRTPPHLQGLVIGCCSAGNMGNLLLIIV 124 (416)
Q Consensus 92 ~v~~i~~~P~~~r~~~i~~~~fgN~g~LPl~lv 124 (416)
.+.|.+|.+++. ....+...||.=-=|-++.
T Consensus 238 ~i~rllg~~~~~--g~li~stAGnAIcgpAAVa 268 (312)
T PRK12460 238 FADRLVGGTGIA--GAAASSTAGNAVATPLAIA 268 (312)
T ss_pred HHHHHhCCChhH--HHHHHHHhhHHHHHHHHHH
Confidence 889999877755 3333334677644444443
No 23
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=36.48 E-value=34 Score=29.84 Aligned_cols=22 Identities=9% Similarity=0.489 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHhcCC
Q 014923 79 ILLSFLIGSALAWILIKITRTP 100 (416)
Q Consensus 79 ~ll~~~iG~~lg~~v~~i~~~P 100 (416)
+++.+++|.++|+++.|++...
T Consensus 2 ~~i~lvvG~iiG~~~~r~~~~~ 23 (128)
T PF06295_consen 2 AIIGLVVGLIIGFLIGRLTSSN 23 (128)
T ss_pred hHHHHHHHHHHHHHHHHHhccc
Confidence 5788999999999999987655
No 24
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=34.30 E-value=2.2e+02 Score=29.49 Aligned_cols=105 Identities=20% Similarity=0.203 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHHHhcc-CCCCChhHHhhhhhhhHhhhhhhHHHHhhccccccccchhhhHHHHHHHHHHHHHHHHHHH
Q 014923 14 ILKVLLVTALGLVLAIDR-IDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLWFMPVNILLSFLIGSALAWI 92 (416)
Q Consensus 14 vlkvlli~~~G~~lA~~~-~~iL~~~~~k~ls~lv~~vflP~LiFskla~~it~~~l~~~w~iPvn~ll~~~iG~~lg~~ 92 (416)
..-+++++.+|...+.+| .+.+ .+...++....++| |.-++..-+++++.+-..+-+..++...+-.++=++
T Consensus 240 ~~~il~~tt~~l~~~~~~~~~~l--~g~~~lg~~lly~f-----fa~IGa~a~i~~l~~ap~~~l~~~i~l~iH~~l~l~ 312 (378)
T PF05684_consen 240 TWLILTVTTLGLATSFPPFRKLL--RGASELGTFLLYLF-----FAVIGASADISELLDAPSLFLFGFIILAIHLLLMLI 312 (378)
T ss_pred HHHHHHHHHHHHHHhccchhhcC--CchHHHHHHHHHHH-----HHHHccccCHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 446677788887776332 2333 55566676666654 778888888888888555566666666778888889
Q ss_pred HHHHhcCCCCccCeeeEEeecCCcchhHHHHHHHhhh
Q 014923 93 LIKITRTPPHLQGLVIGCCSAGNMGNLLLIIVPAVCE 129 (416)
Q Consensus 93 v~~i~~~P~~~r~~~i~~~~fgN~g~LPl~lv~sl~~ 129 (416)
+.|++|.|. ..+.-++-.|+|.-+.+-+.|-.+
T Consensus 313 ~~kl~k~~l----~~~~vAS~AnIGGpaTA~a~A~a~ 345 (378)
T PF05684_consen 313 LGKLFKIDL----FELLVASNANIGGPATAPAVAAAK 345 (378)
T ss_pred HHHHHCCCH----HHHHHHhhcccCCcchHHHHHHhc
Confidence 999999887 556666678888888876555544
No 25
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=31.87 E-value=28 Score=26.32 Aligned_cols=27 Identities=33% Similarity=0.637 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 014923 73 WFMPVNILLSFLIGSALAWILIKITRT 99 (416)
Q Consensus 73 w~iPvn~ll~~~iG~~lg~~v~~i~~~ 99 (416)
+...+.+++++++|+++||++....+.
T Consensus 18 ~pl~l~il~~f~~G~llg~l~~~~~~~ 44 (68)
T PF06305_consen 18 LPLGLLILIAFLLGALLGWLLSLPSRL 44 (68)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566777889999999988766543
No 26
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=29.51 E-value=6.4e+02 Score=25.93 Aligned_cols=106 Identities=16% Similarity=0.154 Sum_probs=59.6
Q ss_pred HHHhhccccccccchhhhH--HHH--HHHHHHHHHHHHHHHHHHHhcCCCCccCeeeE----EeecCCcchhHHHHHHHh
Q 014923 56 IGSNLAETITYQSLISLWF--MPV--NILLSFLIGSALAWILIKITRTPPHLQGLVIG----CCSAGNMGNLLLIIVPAV 127 (416)
Q Consensus 56 iFskla~~it~~~l~~~w~--iPv--n~ll~~~iG~~lg~~v~~i~~~P~~~r~~~i~----~~~fgN~g~LPl~lv~sl 127 (416)
.|+.++-+-+.+++|+=|- .+. ...+...+..++|..+.+++..++. .|.... .++.|..... =+..
T Consensus 73 fF~~igL~~~~~~lkkgg~~~~~~~~~~~~~~~~Q~~vG~~la~l~gl~p~-~Gll~Gsi~f~GGhGTAaa~----g~~f 147 (368)
T PF03616_consen 73 FFTTIGLGASLKLLKKGGKAVLIFLLIAIILAFLQNIVGLGLAKLLGLDPL-FGLLAGSIGFTGGHGTAAAF----GPTF 147 (368)
T ss_pred HHHHHhhccchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCch-HHHHhccccccCCccHHHHH----HHHH
Confidence 3667777777777776551 111 1222346788888888898888764 344332 2223333221 1222
Q ss_pred hhcCCCCCCCchhhcchhhHHHHHHH-HHHHHHhhhhhhhhhhcc
Q 014923 128 CEESNSPFGDTSVCSSYGKAYASLSM-VGAIYIWTYVYYVMSLYL 171 (416)
Q Consensus 128 ~~~~~~pFg~~~~~~~~G~aYv~~~~-~g~i~~wt~~~~ll~~~~ 171 (416)
. | . +|-++ +.+-|+++.-+.. .|.+.-=-.+-+.+|+..
T Consensus 148 e-~--~-~G~~~-a~~vg~a~AT~Glv~G~liGgpi~~~lirk~~ 187 (368)
T PF03616_consen 148 E-E--L-YGWEG-ATSVGMAAATFGLVVGGLIGGPIANWLIRKGK 187 (368)
T ss_pred H-H--h-cChhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 1 1 1 33233 6789999999998 777663333444566653
No 27
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.98 E-value=93 Score=24.52 Aligned_cols=25 Identities=28% Similarity=0.575 Sum_probs=18.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Q 014923 71 SLWFMPVNILLSFLIGSALAWILIK 95 (416)
Q Consensus 71 ~~w~iPvn~ll~~~iG~~lg~~v~~ 95 (416)
++|..-+.++++.++|.+.|+.+++
T Consensus 2 ~l~lail~ivl~ll~G~~~G~fiar 26 (71)
T COG3763 2 SLWLAILLIVLALLAGLIGGFFIAR 26 (71)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3565557788888999999987664
No 28
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=27.04 E-value=1.2e+02 Score=34.88 Aligned_cols=92 Identities=13% Similarity=0.017 Sum_probs=56.4
Q ss_pred hHHhhhhhhhHhhhhhhHHHHhhccccccccchhh---hHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCeeeEEeecC
Q 014923 38 SVTHSLNNLVFYVFNPALIGSNLAETITYQSLISL---WFMPVNILLSFLIGSALAWILIKITRTPPHLQGLVIGCCSAG 114 (416)
Q Consensus 38 ~~~k~ls~lv~~vflP~LiFskla~~it~~~l~~~---w~iPvn~ll~~~iG~~lg~~v~~i~~~P~~~r~~~i~~~~fg 114 (416)
+....+..++..+|+|. -|...|-.+++..+.+. +.+.+-+++.++.=.+.+++..++++.|.+. .+..+..-
T Consensus 314 ~l~ekle~~~~~lflPl-FFv~vGl~idl~~l~~~~~~~~~~~liv~a~~gK~~g~~l~a~~~g~~~~e---al~lG~lm 389 (832)
T PLN03159 314 TLIEKLEDFVSGLLLPL-FFAISGLKTNVTKIQGPATWGLLVLVIIMASAGKIMGTIIIAFFYTMPFRE---GITLGFLM 389 (832)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHhhheeeHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH---HHHHHHHH
Confidence 34566777788899985 46668888888777653 2333333333333446677888999988752 22333345
Q ss_pred CcchhHHHHHHHhhhcCCC
Q 014923 115 NMGNLLLIIVPAVCEESNS 133 (416)
Q Consensus 115 N~g~LPl~lv~sl~~~~~~ 133 (416)
|.-...-.++..+..+.|.
T Consensus 390 ~~kG~~~Lii~~ig~~~gv 408 (832)
T PLN03159 390 NTKGLVEMIVLNVGRDQEV 408 (832)
T ss_pred hcccHHHHHHHHHHHhcCc
Confidence 5555555556666665443
No 29
>PRK14231 camphor resistance protein CrcB; Provisional
Probab=26.98 E-value=91 Score=27.27 Aligned_cols=90 Identities=12% Similarity=0.163 Sum_probs=50.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCeeeEEeecCCcchhHHHHHHHhhhcCCCCCCCchhhcchhhHHHH
Q 014923 71 SLWFMPVNILLSFLIGSALAWILIKITRTPPHLQGLVIGCCSAGNMGNLLLIIVPAVCEESNSPFGDTSVCSSYGKAYAS 150 (416)
Q Consensus 71 ~~w~iPvn~ll~~~iG~~lg~~v~~i~~~P~~~r~~~i~~~~fgN~g~LPl~lv~sl~~~~~~pFg~~~~~~~~G~aYv~ 150 (416)
-|.-+.+|++=++++|.+.++.. +..+.++++|-++ ..+..|=....-.-..+++-- ..+. ....+..|+.
T Consensus 30 P~gTl~vNi~GsfllG~l~~~~~-~~~~~~~~~~~~l-~tGflGgfTTFSTf~~e~~~l-----~~~~--~~~~a~~y~~ 100 (129)
T PRK14231 30 PSATLAVNLIGCFLLAFLMQFLA-EKSRISLVILNGI-GTGFIGAFTTFSAFSVDTIQL-----VQSG--AWLLAVSYVL 100 (129)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH-hccCCCHHHHHHH-HhHHhcccccHHHHHHHHHHH-----HHCC--CHHHHHHHHH
Confidence 36678899999999998887754 3334555555443 334444444444333333311 1111 2356889999
Q ss_pred HHHHHHHHHhhhhhhhhhh
Q 014923 151 LSMVGAIYIWTYVYYVMSL 169 (416)
Q Consensus 151 ~~~~g~i~~wt~~~~ll~~ 169 (416)
.+.++.+..+-.|+.+-++
T Consensus 101 ~s~~~gl~a~~lG~~l~~~ 119 (129)
T PRK14231 101 ASFIGGLIMVKFGRMLSNK 119 (129)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9984444444456655443
No 30
>TIGR00819 ydaH p-Aminobenzoyl-glutamate transporter family. The p-Aminobenzoyl-glutamate transporter family includes two transporters, the AbgT (YdaH) protein of E. coli and MtrF of Neisseria gonorrhoea. AbgT is apparently cryptic in wild type cells, but when expressed on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs. p-Aminobenzoate is a constituent of and a precursor for the biosynthesis of folic acid.
Probab=25.64 E-value=7.9e+02 Score=26.72 Aligned_cols=143 Identities=16% Similarity=0.063 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHHHhccCCCCChhHHhhhhhhhHhhhhhhHHHHhhccccccccchhhhHHHHHHHHHH------HHHH
Q 014923 14 ILKVLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLWFMPVNILLSF------LIGS 87 (416)
Q Consensus 14 vlkvlli~~~G~~lA~~~~~iL~~~~~k~ls~lv~~vflP~LiFskla~~it~~~l~~~w~iPvn~ll~~------~iG~ 87 (416)
-+.++++..+|+-.| +|.|.++.-.||.++|.-=...+|..+|.-+-.++- +|.--+-++|+...+.. ..|.
T Consensus 86 pLg~vlv~mlGvGva-e~tG~i~a~i~~~v~~~p~~~~t~ivv~~gv~s~~a-sdaG~vvl~PL~a~if~a~Gr~PlaGi 163 (513)
T TIGR00819 86 PLGAILALLLGAGIA-EKSGLIPALMRKLASHSNAKLASFMVLFIAFFSHIA-SDAALVILIPLGALIFHALGRHPLAGL 163 (513)
T ss_pred cHHHHHHHHHHHHHH-HHhcHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHcCCChHHHH
Confidence 344555666665555 388999999999999988888888777655444442 22233668999777766 5667
Q ss_pred HHHHHHHHHhcCCCCccCeeeEEeecCCcchhHHHHHHHhhhcCCCCCCCchhhcchhhHHHHHHH-HHHHHHhhhhhhh
Q 014923 88 ALAWILIKITRTPPHLQGLVIGCCSAGNMGNLLLIIVPAVCEESNSPFGDTSVCSSYGKAYASLSM-VGAIYIWTYVYYV 166 (416)
Q Consensus 88 ~lg~~v~~i~~~P~~~r~~~i~~~~fgN~g~LPl~lv~sl~~~~~~pFg~~~~~~~~G~aYv~~~~-~g~i~~wt~~~~l 166 (416)
+.++..+- ++.-++-.-+=++-+-..+-|..++.-| |-.+ .--..+.-|-..+. +-.+..|-|.-+.
T Consensus 164 a~~fagvs---------~GFsAnl~~~~~Dpll~Git~~aA~~~~-~~~~--v~~~~n~~F~~~s~~vl~~v~~~vt~Kv 231 (513)
T TIGR00819 164 AAAFAGVG---------CGFSANLFIGTIDPLLAGISQEAAAAFH-PDMH--VGPEANWFFMAASTFVIAIIGGFITDKI 231 (513)
T ss_pred HHHHHHHh---------hhhhcccccccccHHHHHHHHHHHHhcC-CCcc--cCccccHHHHHHHHHHHHHHHHHHHhhh
Confidence 77776432 1222211112234455566666665211 1111 11222333334444 4444455466666
Q ss_pred hhhc
Q 014923 167 MSLY 170 (416)
Q Consensus 167 l~~~ 170 (416)
.+++
T Consensus 232 ~ePr 235 (513)
T TIGR00819 232 IEPQ 235 (513)
T ss_pred cCCC
Confidence 6444
No 31
>PRK01844 hypothetical protein; Provisional
Probab=24.19 E-value=1.2e+02 Score=24.05 Aligned_cols=24 Identities=17% Similarity=0.522 Sum_probs=17.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q 014923 72 LWFMPVNILLSFLIGSALAWILIK 95 (416)
Q Consensus 72 ~w~iPvn~ll~~~iG~~lg~~v~~ 95 (416)
.|+.-+.++++.++|.+.|+.+.|
T Consensus 3 ~~~~I~l~I~~li~G~~~Gff~ar 26 (72)
T PRK01844 3 IWLGILVGVVALVAGVALGFFIAR 26 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455445566788899999988765
No 32
>PRK05326 potassium/proton antiporter; Reviewed
Probab=24.12 E-value=3.4e+02 Score=29.41 Aligned_cols=97 Identities=12% Similarity=0.113 Sum_probs=54.0
Q ss_pred HHHHHHHhccCCCCChhHHhhhhhhhHhhhhhhHHHHhhccccccccchhhhHHHHHH-HHHHHHH-HHHHHHHHHHhcC
Q 014923 22 ALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLWFMPVNI-LLSFLIG-SALAWILIKITRT 99 (416)
Q Consensus 22 ~~G~~lA~~~~~iL~~~~~k~ls~lv~~vflP~LiFskla~~it~~~l~~~w~iPvn~-ll~~~iG-~~lg~~v~~i~~~ 99 (416)
.+|..++ +.....++.-+...+-.-.++.|. +|..++-.++++++.+.|..-+-+ ++...++ .+..|+..+.+|.
T Consensus 252 iaGl~l~--n~~~~~~~~i~~~~~~l~~l~~~~-~Fv~lGl~~~~~~l~~~~~~~l~i~~~l~~vaR~l~v~l~~~~~~~ 328 (562)
T PRK05326 252 LAGLVLG--NRPIRHRHSILRFFDGLAWLAQIG-MFLVLGLLVTPSRLLDIALPALLLALFLILVARPLAVFLSLLPFRF 328 (562)
T ss_pred HHHHHHh--CCcccchHHHHHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC
Confidence 4555555 333333333444445455677765 799999999999887764322211 1112222 3334455566677
Q ss_pred CCCccCeeeEEeecCCcchhHHHHH
Q 014923 100 PPHLQGLVIGCCSAGNMGNLLLIIV 124 (416)
Q Consensus 100 P~~~r~~~i~~~~fgN~g~LPl~lv 124 (416)
|.+.+-++--+ |-=|..|+++-
T Consensus 329 ~~~e~~~i~~~---g~RG~v~i~lA 350 (562)
T PRK05326 329 NLREKLFISWV---GLRGAVPIVLA 350 (562)
T ss_pred CHhhhheeeee---cchhHHHHHHH
Confidence 66655444332 55778887665
No 33
>COG2855 Predicted membrane protein [Function unknown]
Probab=22.74 E-value=1.2e+02 Score=30.99 Aligned_cols=102 Identities=16% Similarity=0.094 Sum_probs=60.4
Q ss_pred hccccccccchhhhHHHHH-HHHHHHHHHHHHHHHHHHhcCCCCccCeeeEEeecCCcchhHHHHHHHhhhcCCCCCCCc
Q 014923 60 LAETITYQSLISLWFMPVN-ILLSFLIGSALAWILIKITRTPPHLQGLVIGCCSAGNMGNLLLIIVPAVCEESNSPFGDT 138 (416)
Q Consensus 60 la~~it~~~l~~~w~iPvn-~ll~~~iG~~lg~~v~~i~~~P~~~r~~~i~~~~fgN~g~LPl~lv~sl~~~~~~pFg~~ 138 (416)
++-++|++++.+++.=-+- .+++...+.++++.+.|.++.|++.--.+=+. .+=-|+= =+.|+ ++-.+ .+
T Consensus 79 lG~~ltl~~i~~~G~~~v~~~~~~l~~t~~~~~~lg~~lgld~~~a~Lia~G--ssICGas---AiaA~--~pvik--a~ 149 (334)
T COG2855 79 LGFRLTLSDIADVGGSGVLIIAITLSSTFLFAYFLGKLLGLDKKLALLIAAG--SSICGAS---AIAAT--APVIK--AE 149 (334)
T ss_pred HcceeeHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHcc--chhhHHH---HHHHh--CCcCC--CC
Confidence 6889999999999843322 44555788899999999999999765443222 1111110 11111 22222 33
Q ss_pred hhhcchhhHHHHHHHHHHHHHhhhhhhhhhhc
Q 014923 139 SVCSSYGKAYASLSMVGAIYIWTYVYYVMSLY 170 (416)
Q Consensus 139 ~~~~~~G~aYv~~~~~g~i~~wt~~~~ll~~~ 170 (416)
|++....++-+.++-.-.++.|.+-|+++..+
T Consensus 150 ~~eva~aIa~V~lfgtia~llyP~l~~~l~l~ 181 (334)
T COG2855 150 EEEVAVAIAVVVLFGTLAMLLYPLLYPLLGLS 181 (334)
T ss_pred ccccceehhhHHHHHHHHHHHHHHHHHHhCCC
Confidence 33466666666666533455666677766533
No 34
>PF11120 DUF2636: Protein of unknown function (DUF2636); InterPro: IPR019995 Members of this protein family are found invariably together with genes of bacterial cellulose biosynthesis, and are presumed to be involved in the process []. Members average about 63 amino acids in length and are not uncharacterised. The gene has been designated both YhjT and BcsF (bacterial cellulose synthesis F).
Probab=22.63 E-value=86 Score=24.13 Aligned_cols=28 Identities=21% Similarity=0.307 Sum_probs=18.9
Q ss_pred ccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 014923 65 TYQSLISLWFMPVNILLSFLIGSALAWILIKITR 98 (416)
Q Consensus 65 t~~~l~~~w~iPvn~ll~~~iG~~lg~~v~~i~~ 98 (416)
+++|+.++ ++++-++...+||+..+.++
T Consensus 2 ~i~DiiQi------i~l~AlI~~pLGyl~~~~~~ 29 (62)
T PF11120_consen 2 NISDIIQI------IILCALIFFPLGYLARRWLP 29 (62)
T ss_pred CHHHHHHH------HHHHHHHHHhHHHHHHHHhH
Confidence 56777777 45566667777887776543
No 35
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=21.49 E-value=3.1e+02 Score=27.85 Aligned_cols=108 Identities=16% Similarity=0.122 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCChhHHhhhhhhhHhhhhhhHHHHhhccccccccchhhhHHHH-HHHHHHHHHHHH
Q 014923 11 LMPILKVLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLWFMPV-NILLSFLIGSAL 89 (416)
Q Consensus 11 ~~pvlkvlli~~~G~~lA~~~~~iL~~~~~k~ls~lv~~vflP~LiFskla~~it~~~l~~~w~iPv-n~ll~~~iG~~l 89 (416)
.++++-.++-..+|.++. =||+|.||-+++-+ .+..|-+-| .++.+++++++.+=.+-=+ -.++.+.+....
T Consensus 168 ~~~lv~~llP~iiG~iLG-----NLD~~~r~fl~~~~-~~lIPF~~f-~lGa~inl~~i~~aGl~GIlLgv~~~~vtg~~ 240 (314)
T PF03812_consen 168 WMSLVAALLPIIIGMILG-----NLDPDFRKFLAPGV-PILIPFFGF-ALGAGINLSNIIKAGLSGILLGVIVVVVTGIP 240 (314)
T ss_pred HHHHHHHHHHHHHHHHHh-----cCCHHHHHHHhcCC-Ceeeehhhh-hhcCCCCHHHHHHhCcchHHHHHHHHHHHhHH
Confidence 567788888889999886 38999999998865 456777766 4899999999988764222 233444555555
Q ss_pred HHHHHHHhcCCCCccCeeeEEeecCCcchhHHHHHHH
Q 014923 90 AWILIKITRTPPHLQGLVIGCCSAGNMGNLLLIIVPA 126 (416)
Q Consensus 90 g~~v~~i~~~P~~~r~~~i~~~~fgN~g~LPl~lv~s 126 (416)
.++.-|..+= ++=..+.=+.+.+||.-.-|-++-++
T Consensus 241 ~~~~dr~i~~-~~g~aG~A~sstAGnavatPaaiA~~ 276 (314)
T PF03812_consen 241 LYLADRLILK-GNGVAGAAISSTAGNAVATPAAIAAA 276 (314)
T ss_pred HHHHHHHHcC-CCCceeehHHhhhhhhhhhhHHHHHh
Confidence 6666666421 11122334456678988888766544
No 36
>COG2323 Predicted membrane protein [Function unknown]
Probab=21.48 E-value=1.8e+02 Score=28.00 Aligned_cols=85 Identities=16% Similarity=0.235 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHHHhccCCCCChhHHhhhhhhhHhhhhhhHHHHhhccccccccchhhhHHHHHHHHHHHHHHHHHHHH
Q 014923 14 ILKVLLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLWFMPVNILLSFLIGSALAWIL 93 (416)
Q Consensus 14 vlkvlli~~~G~~lA~~~~~iL~~~~~k~ls~lv~~vflP~LiFskla~~it~~~l~~~w~iPvn~ll~~~iG~~lg~~v 93 (416)
++|-+++..+++++. | -.+||++|++...=|.=.++...++.....++=..+|..-+.+++..++..++.|+.
T Consensus 8 ~ir~vi~~~~l~l~~--r-----i~Gkr~isqmt~fd~vv~i~iG~i~~~~i~~~~i~~~~~~~~~~~~~~l~~~l~~l~ 80 (224)
T COG2323 8 AIRSVIGYLILLLLL--R-----IMGKRSISQMTIFDFVVMITLGSIAGDAIFDDDVSILPTIIAILTLALLQILLSYLS 80 (224)
T ss_pred HHHHHHHHHHHHHHH--H-----HhCcCccccCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777777666 4 567899999999999999999999998888876777766666777778888899988
Q ss_pred HHHhcCCCCccC
Q 014923 94 IKITRTPPHLQG 105 (416)
Q Consensus 94 ~~i~~~P~~~r~ 105 (416)
.|--+.-+-+.|
T Consensus 81 ~ks~~~r~~l~G 92 (224)
T COG2323 81 LKSRKLRKLLEG 92 (224)
T ss_pred hccHHHHHhhcC
Confidence 877666553333
No 37
>COG2978 AbgT Putative p-aminobenzoyl-glutamate transporter [Coenzyme metabolism]
Probab=21.36 E-value=2.6e+02 Score=30.02 Aligned_cols=141 Identities=14% Similarity=0.141 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHhccCCCCChhHHhhhhhhhHhhhhhhHHHHhhccccccccchhhhHHHHHHHHHHHHH------HHHHH
Q 014923 18 LLVTALGLVLAIDRIDLLGHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISLWFMPVNILLSFLIG------SALAW 91 (416)
Q Consensus 18 lli~~~G~~lA~~~~~iL~~~~~k~ls~lv~~vflP~LiFskla~~it~~~l~~~w~iPvn~ll~~~iG------~~lg~ 91 (416)
++...+|.-.| +|.|++++-.||.+++.-=-+.+|..+|.-+.+++ .+|.--+-.+|+...+-..+| .+.++
T Consensus 95 VLv~mLGigvA-E~SGll~alm~~~~~~~pk~llt~~vvfigi~s~~-asDaayVVlpPlaAmiF~a~GRHPlAGlaaaf 172 (516)
T COG2978 95 VLVVMLGIGVA-ERSGLLSALMRKLLNKVPKRLLTFTVVFIGILSHI-ASDAAYVVLPPLAAMIFIALGRHPLAGLAAAF 172 (516)
T ss_pred HHHHHHhhhhh-hhcccHHHHHHHHHhhcchHHHhhHHHHHHHHHHH-HhhcceeEecchHHHHHHHhCCCcHHHHHHHH
Confidence 34445555555 48999999999999999999999999999888875 345555556888766655433 33333
Q ss_pred HHHHHhcCCCCccCeeeEEeecCCcc-hhHHHHHHHhhhcCCCCCCCchhhcchhhHHHHHHH--HHHHHHhhhhhhhhh
Q 014923 92 ILIKITRTPPHLQGLVIGCCSAGNMG-NLLLIIVPAVCEESNSPFGDTSVCSSYGKAYASLSM--VGAIYIWTYVYYVMS 168 (416)
Q Consensus 92 ~v~~i~~~P~~~r~~~i~~~~fgN~g-~LPl~lv~sl~~~~~~pFg~~~~~~~~G~aYv~~~~--~g~i~~wt~~~~ll~ 168 (416)
.- ++++-.+|.- .-.=.++..+.++...-.+++-+.+-.+.=|..+.. +-....|-...+.++
T Consensus 173 Ag--------------vsgGfsanl~~~~~D~Ll~GfTq~AA~iidp~~~vnp~~NwyF~~as~~vl~~i~~fvTdKivE 238 (516)
T COG2978 173 AG--------------VSGGFSANLLPGTIDPLLAGFTQPAAQIIDPSYQVNPLMNWYFIAASVFVLTLIGWFVTDKIIE 238 (516)
T ss_pred hh--------------cccccccccccCcchHHHHHhhHHHHHhcCCccccCcchhHHHHHHHHHHHHHHHHHHhccccc
Confidence 21 2223333430 011124555554322222222222333444555544 556667877778887
Q ss_pred hccccc
Q 014923 169 LYLNKS 174 (416)
Q Consensus 169 ~~~~~~ 174 (416)
++-..+
T Consensus 239 PRLg~~ 244 (516)
T COG2978 239 PRLGPY 244 (516)
T ss_pred cCCCCC
Confidence 764333
No 38
>KOG2718 consensus Na+-bile acid cotransporter [Inorganic ion transport and metabolism]
Probab=21.20 E-value=59 Score=33.68 Aligned_cols=74 Identities=24% Similarity=0.387 Sum_probs=53.8
Q ss_pred hhhhhHhhhhhhHHHHhhcc--ccccccchhhhHHHHHHHH----HHHHHHHHHHHHHHHhcCCCCc-cCeeeEEeecCC
Q 014923 43 LNNLVFYVFNPALIGSNLAE--TITYQSLISLWFMPVNILL----SFLIGSALAWILIKITRTPPHL-QGLVIGCCSAGN 115 (416)
Q Consensus 43 ls~lv~~vflP~LiFskla~--~it~~~l~~~w~iPvn~ll----~~~iG~~lg~~v~~i~~~P~~~-r~~~i~~~~fgN 115 (416)
.+.++-.+|.|.+.+..++. ..+.|+.+..|--|.-..+ -+.+.-++|+.+.+.+..|+++ .++++.+|..|=
T Consensus 107 ~t~l~~~~~~~gl~~~~ls~g~~~~~~~~~~~~~rP~~~~lG~v~q~~i~pl~~f~~~~~~~lP~~~~ag~~Lvtc~~p~ 186 (371)
T KOG2718|consen 107 FTWLVTGCFPPGLLSNMLSFGIKLDMDLFAGMIKRPTPLALGFVPQYLIMPLLGFLLSKVLLLPAALAAGLLLVTCVSPG 186 (371)
T ss_pred ceEEEeCccccHHHHHHHHHhcCccHHHHhhHhhCCcceeehHHHHHHHHHHHHHhhhhHhhCCccccceeEEEEeccCC
Confidence 34444455567777766655 4588899888855544333 3577888899999999999999 799999988764
Q ss_pred c
Q 014923 116 M 116 (416)
Q Consensus 116 ~ 116 (416)
-
T Consensus 187 g 187 (371)
T KOG2718|consen 187 G 187 (371)
T ss_pred c
Confidence 3
No 39
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=20.98 E-value=1.5e+02 Score=29.94 Aligned_cols=47 Identities=21% Similarity=0.451 Sum_probs=32.9
Q ss_pred HHHHhhccccccccch---hhhHH-HHHHHHHHHHHHHHHHHHHHHhcCCC
Q 014923 55 LIGSNLAETITYQSLI---SLWFM-PVNILLSFLIGSALAWILIKITRTPP 101 (416)
Q Consensus 55 LiFskla~~it~~~l~---~~w~i-Pvn~ll~~~iG~~lg~~v~~i~~~P~ 101 (416)
++-..++.++|+|.+. +||.- -+..+.+..++.+.+|+..|..|.++
T Consensus 33 ilG~~iG~~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~~~~d~ 83 (318)
T PF05145_consen 33 ILGVSIGSSFTPEVLAQLASWWPPMLLLLVVTLLLSLVGAWLLRRISGLDR 83 (318)
T ss_pred HHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCh
Confidence 4567788888877655 44432 22333445889999999999998876
No 40
>KOG3788 consensus Predicted divalent cation transporter [Inorganic ion transport and metabolism]
Probab=20.56 E-value=4e+02 Score=28.08 Aligned_cols=102 Identities=22% Similarity=0.459 Sum_probs=61.3
Q ss_pred HHHHHHHHHHhcchhhhhhhccCCCchhhHHHHHHHhhcchhhHHHHHhhhhcccCCccCCCCchhhHHHHHHHHHHHhH
Q 014923 259 TIAAIIGFVIGTISPFRKVIVGESAPLRVLDSSAALVGEAAIPAMTLVIGANLLSGLKRSGVGVSLIMGIIAIRYILLPL 338 (416)
Q Consensus 259 ~ia~ilg~ivg~ippLk~l~~~~~apL~~i~ds~~~lG~a~IP~~llvLGa~L~~g~~~s~l~~~~iv~iv~~RliilPi 338 (416)
..+++.++++|.+| =|+-.+.-.++++|+.+.. ...-=.++-+
T Consensus 123 fla~i~a~~lg~~p----------------------~~~~~~~~~llL~~SSv~t---------------a~las~vl~~ 165 (441)
T KOG3788|consen 123 FLAAIAAIALGIIP----------------------EGDFDIEHSLLLCASSVAT---------------ATLASLVLGI 165 (441)
T ss_pred HHHHHHHHHhccCc----------------------cCCCcHHHHHHHHHHHHHH---------------HHHHHHHHHH
Confidence 45667777777777 1244455666666666643 2222345567
Q ss_pred HHHHHHHHHHHhCCCCCChHHHHHHHhhccCchhHHHHHHH---------hhh-ccCchh--hHHHHHHHHHHHHHHHHH
Q 014923 339 LGIVIVKAAYRFGFIGSDSLYQFILLLQYAVPPALAVGTII---------QLF-ETSESE--CSVILLWTYAVAAFALTL 406 (416)
Q Consensus 339 igv~iv~~~~k~g~~~~Dpl~~fVllL~~~~P~A~~l~~it---------ql~-~~~e~e--~S~ilfwqY~~~~vslt~ 406 (416)
+.+.++-++.|+|.-||| .++|.|-.+|=+. +.+ ++.+.+ ...+..|.|+. .+|+
T Consensus 166 lmv~vIi~srk~~iNPDN----------IatPiaASlGDl~Tl~~L~~~~~~~~~~~~~~~~l~~~v~~~fla---l~pv 232 (441)
T KOG3788|consen 166 LMVVVIIGSRKYDINPDN----------IATPIAASLGDLLTLSSLAFFGSLFYNASDTSSYLTVLVVVFFLA---LLPV 232 (441)
T ss_pred HHhheeeeeeccCCCchh----------hcchhhhhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHH---HhHH
Confidence 778888899999997776 4789988776553 332 333332 33344454443 3567
Q ss_pred HHHH
Q 014923 407 WITF 410 (416)
Q Consensus 407 ~~t~ 410 (416)
|+.+
T Consensus 233 wi~i 236 (441)
T KOG3788|consen 233 WIMI 236 (441)
T ss_pred HHhh
Confidence 7765
No 41
>PF06522 B12D: NADH-ubiquinone reductase complex 1 MLRQ subunit; InterPro: IPR010530 The MLRQ subunit of mitochondrial NADH-ubiquinone reductase complex I is nuclear [] and is found in plants [], insects, fungi and higher metazoans []. It appears to act within the membrane and, in mammals, is highly expressed in muscle and neural tissue, indicative of a role in ATP generation [].
Probab=20.43 E-value=1.2e+02 Score=23.75 Aligned_cols=28 Identities=14% Similarity=0.419 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 014923 74 FMPVNILLSFLIGSALAWILIKITRTPP 101 (416)
Q Consensus 74 ~iPvn~ll~~~iG~~lg~~v~~i~~~P~ 101 (416)
.+|+.+++.+++|++.++++..+++=|.
T Consensus 6 l~PL~~~vg~a~~~a~~~~~r~l~~~Pd 33 (73)
T PF06522_consen 6 LYPLFVIVGVAVGGATFYLYRLLLTNPD 33 (73)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3899999999999999999988866664
No 42
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=20.40 E-value=1.8e+02 Score=25.90 Aligned_cols=47 Identities=28% Similarity=0.556 Sum_probs=34.4
Q ss_pred HHHHhhccccccccchh---hhH-HHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 014923 55 LIGSNLAETITYQSLIS---LWF-MPVNILLSFLIGSALAWILIKITRTPP 101 (416)
Q Consensus 55 LiFskla~~it~~~l~~---~w~-iPvn~ll~~~iG~~lg~~v~~i~~~P~ 101 (416)
++-..++.++|.+++++ +|. .-+..+++..++...+|+..|.++.|.
T Consensus 55 iiG~~iG~~f~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~l~~~~~~~~ 105 (156)
T TIGR03082 55 VIGILIGSRFTREVLAELKRLWPAALLSTVLLLALSALLAWLLARLTGVDP 105 (156)
T ss_pred HHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
Confidence 45678888888776655 332 334445566889999999999999887
No 43
>PRK04972 putative transporter; Provisional
Probab=20.33 E-value=3.1e+02 Score=29.92 Aligned_cols=149 Identities=19% Similarity=0.100 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCC--------------------ChhHHhhhhhhhHhhhhhhHHHHhhccccccccchh
Q 014923 12 MPILKVLLVTALGLVLAIDRIDLL--------------------GHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLIS 71 (416)
Q Consensus 12 ~pvlkvlli~~~G~~lA~~~~~iL--------------------~~~~~k~ls~lv~~vflP~LiFskla~~it~~~l~~ 71 (416)
.|++-+.+.+++|+++. |..+- ..+.-..+.++=+.+|+=|. -.+-++.+ ++++++
T Consensus 12 ~~~~~lf~~i~lG~~lG--~i~~~~~~LG~~~g~L~vgl~~g~~~~~~~~~~~~~gl~lF~~~v-G~~~Gp~F-~~~l~~ 87 (558)
T PRK04972 12 NYILLLFVVLALGLCLG--KLRLGSIQLGNSIGVLVVSLLLGQQHFSINTDALNLGFMLFIFCV-GVEAGPNF-FSIFFR 87 (558)
T ss_pred CChHHHHHHHHHHHhhh--ceEEeeEecCcchHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHH-hhhhhHHH-HHHHHH
Confidence 68888999999999888 54331 11111112223333333322 12222222 112232
Q ss_pred h-hHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCeeeEEeecCCcchhHHHHHHHhhhcCCCCCCC---chhhcchhhH
Q 014923 72 L-WFMPVNILLSFLIGSALAWILIKITRTPPHLQGLVIGCCSAGNMGNLLLIIVPAVCEESNSPFGD---TSVCSSYGKA 147 (416)
Q Consensus 72 ~-w~iPvn~ll~~~iG~~lg~~v~~i~~~P~~~r~~~i~~~~fgN~g~LPl~lv~sl~~~~~~pFg~---~~~~~~~G~a 147 (416)
- |-.-+..++.++++.++++...|+++.+...--+++ |++.-|+-.|=-+ .+++ ++ ....+ ++...+-+++
T Consensus 88 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~-aGa~T~tp~l~~a-~~~~-~~--~~~~~~~~~~~~~~~~vg 162 (558)
T PRK04972 88 DGKNYLMLALVMVGSALVIALGLGKLFGWDIGLTAGML-AGSMTSTPVLVGA-GDTL-RH--SGAESRQLSLALDNLSLG 162 (558)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHh-hccccCcHHHHHH-HHHH-hc--cCccccchhcccCccchh
Confidence 1 223334566778899999999999999985444433 3334444333222 2333 21 11111 1111234678
Q ss_pred HHHHHH---HHHHHHhhhhhhhhhh
Q 014923 148 YASLSM---VGAIYIWTYVYYVMSL 169 (416)
Q Consensus 148 Yv~~~~---~g~i~~wt~~~~ll~~ 169 (416)
|...|- ++.++.=++..+++|.
T Consensus 163 Ya~~y~~g~i~~i~~~~~~p~l~ri 187 (558)
T PRK04972 163 YALTYLIGLVSLIVGARYLPKLQHQ 187 (558)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHhCC
Confidence 887775 3545444444555553
No 44
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=20.13 E-value=2.3e+02 Score=30.88 Aligned_cols=147 Identities=16% Similarity=0.123 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCChhHHhhhhhh-hHhhhhhhHHHHhhccccccccchhhh---------------
Q 014923 10 ALMPILKVLLVTALGLVLAIDRIDLLGHSVTHSLNNL-VFYVFNPALIGSNLAETITYQSLISLW--------------- 73 (416)
Q Consensus 10 a~~pvlkvlli~~~G~~lA~~~~~iL~~~~~k~ls~l-v~~vflP~LiFskla~~it~~~l~~~w--------------- 73 (416)
.-+|++=+++++++|+++. |..+ |.+|== +--++.=.|++.+++..+.. .++++.
T Consensus 8 ~~~p~l~lfl~i~lG~~lG--~iki------~~~~LG~~~gvLfvgl~~G~~g~~i~~-~v~~~gl~lFvy~vG~~~Gp~ 78 (562)
T TIGR03802 8 RSNPEIALFLSLALGYLIG--KIKF------GSFQLGGVAGSLIVAVLIGQLGIQIDP-GVKAVFFALFIFAIGYEVGPQ 78 (562)
T ss_pred HHCHHHHHHHHHHHhHhhc--ceEE------eeeecchHHHHHHHHHHHHhcCCCCCh-HHHHHHHHHHHHHhhhccCHH
Confidence 4589999999999999998 6544 111111 11222234444444443321 133322
Q ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCeeeEEeecCCcchhHHHHHHHhhhcCCCCCCCc---hh
Q 014923 74 ----------FMPVNILLSFLIGSALAWILIKITRTPPHLQGLVIGCCSAGNMGNLLLIIVPAVCEESNSPFGDT---SV 140 (416)
Q Consensus 74 ----------~iPvn~ll~~~iG~~lg~~v~~i~~~P~~~r~~~i~~~~fgN~g~LPl~lv~sl~~~~~~pFg~~---~~ 140 (416)
-.-+..++..++|.++.|...+++..|+..-.++. +++--|+-.|=-| .+++.+ .+.+++ ..
T Consensus 79 Ff~~l~~~g~~~~~~a~~~~~~~~~~~~~~~~~~g~~~~~~~Gl~-aGalT~tp~l~aA-~~a~~~---~~~~~~~~~~~ 153 (562)
T TIGR03802 79 FFASLKKDGLREIILALVFAVSGLITVYALAKIFGLDKGTAAGLA-AGGLTQSAVIGTA-GDAIEK---LGLSPEQKTAY 153 (562)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHH-hchhhccHHHHHH-HHHHHh---cCCCcchhhcc
Confidence 22333555668889999999999999986555543 3444555555333 455532 122211 00
Q ss_pred hcchhhHHHHHHH---HHHHHHhhh-hhhhhhhc
Q 014923 141 CSSYGKAYASLSM---VGAIYIWTY-VYYVMSLY 170 (416)
Q Consensus 141 ~~~~G~aYv~~~~---~g~i~~wt~-~~~ll~~~ 170 (416)
..+-+++|...|- +|.++.-.+ ..+++|.+
T Consensus 154 ~~~~avgYav~YpfGvig~i~~~~~~~p~l~~~~ 187 (562)
T TIGR03802 154 QGNVAVAYAVTYIFGTIGVIIVLVNILPWLMGID 187 (562)
T ss_pred ccccceeeehhhhhHHHHHHHHHHHHHHHHhCCC
Confidence 1123455555553 666643333 44566544
No 45
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=20.08 E-value=1.5e+02 Score=30.47 Aligned_cols=81 Identities=19% Similarity=0.287 Sum_probs=50.4
Q ss_pred hHHHHhhccccccccc---hhhhHHHHHHHHHH-HHHHHHHHHHHHHhcCCCCccCeeeEEeecCCcchhHHHHHHHhhh
Q 014923 54 ALIGSNLAETITYQSL---ISLWFMPVNILLSF-LIGSALAWILIKITRTPPHLQGLVIGCCSAGNMGNLLLIIVPAVCE 129 (416)
Q Consensus 54 ~LiFskla~~it~~~l---~~~w~iPvn~ll~~-~iG~~lg~~v~~i~~~P~~~r~~~i~~~~fgN~g~LPl~lv~sl~~ 129 (416)
..+--++|.++|++++ |+.|++-+.+++.+ .+|..+||+..|.-+.|+. ...-+++-|- .+.+.++++
T Consensus 65 ~ilG~~ig~~~t~s~l~~l~~~w~~~~~v~~~tl~~s~l~g~ll~r~~~~~~~---Ta~~gs~PGg-----as~m~~iA~ 136 (352)
T COG3180 65 VILGIMIGASLTPSVLDTLKSNWPIVLVVLLLTLLSSILLGWLLKRFSILPGN---TAFLGSSPGG-----ASAMVSIAQ 136 (352)
T ss_pred HHHHHHHhhhcCHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHhcCCCcc---hhhHhcCCch-----HHHHHHHHH
Confidence 3455677888877654 56677666555554 8899999999999877762 2222333333 344566766
Q ss_pred cCCCCCCCchhhcchhhHHHHHHH
Q 014923 130 ESNSPFGDTSVCSSYGKAYASLSM 153 (416)
Q Consensus 130 ~~~~pFg~~~~~~~~G~aYv~~~~ 153 (416)
|.| .-.+++++.|
T Consensus 137 d~g-----------Ad~~~VAl~Q 149 (352)
T COG3180 137 DYG-----------ADLRLVALMQ 149 (352)
T ss_pred HhC-----------CChhHHHHHH
Confidence 522 2246677666
Done!