Query 014923
Match_columns 416
No_of_seqs 120 out of 219
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 03:32:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014923.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014923hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zux_A Transporter, ASBTNM; tr 97.4 0.0015 5.3E-08 64.5 13.2 136 258-412 20-156 (332)
2 3zux_A Transporter, ASBTNM; tr 84.2 2.5 8.7E-05 41.3 8.0 46 78-124 233-278 (332)
3 1zcd_A Na(+)/H(+) antiporter 1 9.8 1.2E+02 0.0039 30.3 1.9 97 36-132 248-353 (388)
4 4f4l_A ION transport protein; 6.5 8.4E+02 0.029 19.1 5.5 50 113-162 36-88 (112)
5 3rvy_A ION transport protein; 6.1 1E+03 0.035 21.3 6.7 47 115-162 177-230 (285)
6 2k1a_A Integrin alpha-IIB; sin 6.1 6.6E+02 0.023 16.7 4.7 35 316-354 4-38 (42)
7 1vf5_F Protein PET M; photosyn 5.8 6.4E+02 0.022 16.2 3.9 23 76-98 9-31 (35)
8 1q90_M Cytochrome B6F complex 5.0 7.7E+02 0.026 16.3 4.1 23 76-98 10-32 (39)
9 1v54_L VIIIA, cytochrome C oxi 5.0 7.2E+02 0.025 16.9 3.5 23 390-412 21-43 (47)
10 1q90_G Cytochrome B6F complex 5.0 2.6E+02 0.009 18.3 1.2 11 263-273 6-16 (37)
No 1
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=97.39 E-value=0.0015 Score=64.51 Aligned_cols=136 Identities=7% Similarity=-0.031 Sum_probs=99.3
Q ss_pred hHHHHHHHHHHhcchhhhhhhccCCCchhhHHHHHHHhhcchhhHHHHHhhhhccc-CCccCCCCchhhHHHHHHHHHHH
Q 014923 258 STIAAIIGFVIGTISPFRKVIVGESAPLRVLDSSAALVGEAAIPAMTLVIGANLLS-GLKRSGVGVSLIMGIIAIRYILL 336 (416)
Q Consensus 258 p~ia~ilg~ivg~ippLk~l~~~~~apL~~i~ds~~~lG~a~IP~~llvLGa~L~~-g~~~s~l~~~~iv~iv~~Rliil 336 (416)
-++..+++.++|..-|=.. ..++ . .-...+.++++..|.++.. ..+...-.+|......+.+++++
T Consensus 20 ~~l~i~~~~~lg~~~P~~~------~~~~---~----~i~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~l~~~~vi~ 86 (332)
T 3zux_A 20 FSLWAALFAAAAFFAPDTF------KWAG---P----YIPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFAIM 86 (332)
T ss_dssp HHHHHHHHHHHHHHCGGGT------GGGG---G----GHHHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcchhh------hhhH---H----HHHHHHHHHHHHHHhCCCHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 3666777777776543211 1111 1 2235788999999999964 12222234577788899999999
Q ss_pred hHHHHHHHHHHHHhCCCCCChHHHHHHHhhccCchhHHHHHHHhhhccCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 014923 337 PLLGIVIVKAAYRFGFIGSDSLYQFILLLQYAVPPALAVGTIIQLFETSESECSVILLWTYAVAAFALTLWITFYI 412 (416)
Q Consensus 337 Piigv~iv~~~~k~g~~~~Dpl~~fVllL~~~~P~A~~l~~itql~~~~e~e~S~ilfwqY~~~~vslt~~~t~~l 412 (416)
|+++.++.+.. +.||.+...+++..++|++.+-..+|++.+....-+...-..+-.++.+.+|+|..+++
T Consensus 87 Pll~~~l~~~~------~l~~~~~~Glil~~~~P~~~~s~v~t~~a~Gd~~la~~~~~~stll~~~~~Pl~~~l~~ 156 (332)
T 3zux_A 87 PATAWCLSKLL------NLPAEIAVGVILVGCCPGGTASNVMTYLARGNVALSVAVTSVSTLTSPLLTPAIFLMLA 156 (332)
T ss_dssp HHHHHHHHHHT------TCCHHHHHHHHHHHHSCCCTHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh------CCChHHHHHHHHHhcCCchhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999988743 66999999999999999999988899998654444555555899999999999988775
No 2
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=84.25 E-value=2.5 Score=41.25 Aligned_cols=46 Identities=24% Similarity=0.179 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCccCeeeEEeecCCcchhHHHHH
Q 014923 78 NILLSFLIGSALAWILIKITRTPPHLQGLVIGCCSAGNMGNLLLIIV 124 (416)
Q Consensus 78 n~ll~~~iG~~lg~~v~~i~~~P~~~r~~~i~~~~fgN~g~LPl~lv 124 (416)
..++.+.+|+.+||.+.|.+|.+++.|.-+...|+..|++ +-+++.
T Consensus 233 ~~~l~~~~~~~lg~~~~r~~~~~~~~~~ti~~e~G~qNs~-lai~lA 278 (332)
T 3zux_A 233 VVVLHNGIGYLLGFFAAKWTGLPYDAQKALTIEVGMQNSG-LAAALA 278 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHCCCHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHhHhhhhhhhhhhccHH-HHHHHH
Confidence 3566779999999999999999999888777778889983 444443
No 3
>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A
Probab=9.76 E-value=1.2e+02 Score=30.28 Aligned_cols=97 Identities=18% Similarity=0.311 Sum_probs=63.0
Q ss_pred ChhHHhhhhhhhHhhhhhhHHHHhhccccccccchhh-hHHHHHHHHHH----HHH-HHHHHHHHHHh--cCCCCc-cCe
Q 014923 36 GHSVTHSLNNLVFYVFNPALIGSNLAETITYQSLISL-WFMPVNILLSF----LIG-SALAWILIKIT--RTPPHL-QGL 106 (416)
Q Consensus 36 ~~~~~k~ls~lv~~vflP~LiFskla~~it~~~l~~~-w~iPvn~ll~~----~iG-~~lg~~v~~i~--~~P~~~-r~~ 106 (416)
.++-++.+...+..+++|---|.+.+=+++.+....+ -..++-+.+.- .+| +..+|+..|.. |.|+.+ ++.
T Consensus 248 ~~~le~~l~p~v~~~ilPlFaFanaGv~l~~~~~~~l~~~~~lgi~~glvvGK~~Gi~~~~~l~~rl~~~~lp~g~~~~~ 327 (388)
T 1zcd_A 248 AKRLEHVLHPWVAYLILPLFAFANAGVSLQGVTLDGLTSILPLGIIAGLLIGKPLGISLFCWLALRLKLAHLPEGTTYQQ 327 (388)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHCCCCCSSSCCCTHHHHSSTTTTHHHHHTTGGGSTTHHHHTSSCTTTCCCCSCCGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCeeecccchhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCCCCHHH
Confidence 4667888999999999999999999999987432222 01111111111 334 33356666655 677764 335
Q ss_pred eeEEeecCCcchhHHHHHHHhhhcCC
Q 014923 107 VIGCCSAGNMGNLLLIIVPAVCEESN 132 (416)
Q Consensus 107 ~i~~~~fgN~g~LPl~lv~sl~~~~~ 132 (416)
..+.+.-.|+|-..=.++..+.-+++
T Consensus 328 ~~~vg~L~gigftmsL~Ia~laf~~~ 353 (388)
T 1zcd_A 328 IMVVGILCGIGFTMSIFIASLAFGSV 353 (388)
T ss_dssp GTTHHHHTTCCHHHHHHHHHHHSTTS
T ss_pred HHHHHHHhccchHHHHHHHHHhccCC
Confidence 56667778988877778888877543
No 4
>4f4l_A ION transport protein; alpha helical membrane protein, voltage-gated sodium channel membrane, metal transport; 3.49A {Magnetococcus marinus}
Probab=6.49 E-value=8.4e+02 Score=19.05 Aligned_cols=50 Identities=8% Similarity=0.047 Sum_probs=25.3
Q ss_pred cCCcchhHHHHHHHhhhcC--CCCCCCchhhcchhhHHHHHHH-HHHHHHhhh
Q 014923 113 AGNMGNLLLIIVPAVCEES--NSPFGDTSVCSSYGKAYASLSM-VGAIYIWTY 162 (416)
Q Consensus 113 fgN~g~LPl~lv~sl~~~~--~~pFg~~~~~~~~G~aYv~~~~-~g~i~~wt~ 162 (416)
|+|.++=-+.+.+-++.|+ +.-..+.......+..|...+. +|..+.-..
T Consensus 36 F~~~~~s~ltLF~i~T~e~W~~~~~~~~~~~~~~a~iyFi~fi~i~~fi~lNL 88 (112)
T 4f4l_A 36 FGDLSKSLYTLFQVMTLESWSMGIVRPVMNVHPNAWVFFIPFIMLTTFTVLNL 88 (112)
T ss_dssp HSSHHHHHHHHHHHHTTTTCCCCCHHHHTTTSTTTHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccccHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666667776652 1111111111223445666666 776665544
No 5
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=6.13 E-value=1e+03 Score=21.31 Aligned_cols=47 Identities=9% Similarity=-0.011 Sum_probs=24.6
Q ss_pred CcchhHHHHHHHhhhcCCCCCC-Cc--hhhcc---hhhHHHHHHH-HHHHHHhhh
Q 014923 115 NMGNLLLIIVPAVCEESNSPFG-DT--SVCSS---YGKAYASLSM-VGAIYIWTY 162 (416)
Q Consensus 115 N~g~LPl~lv~sl~~~~~~pFg-~~--~~~~~---~G~aYv~~~~-~g~i~~wt~ 162 (416)
|.+|+|-++..+..--.+.-|| +- + +.. -|.-|...+. ++++..-..
T Consensus 177 ~F~s~~~a~~~~~~~~T~~g~~~di~~p-~~~~~~~~~~~f~~~~~i~~~~~lnl 230 (285)
T 3rvy_A 177 WFGTLGESFYTLFQVMTLESWSMGIVRP-LMEVYPYAWVFFIPFIFVVTFVMINL 230 (285)
T ss_dssp HHSSHHHHHHHHHHHHTTTTCCCCCHHH-HHTTCTTTHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhCCCcHHHHHH-HHHcCChHHhhHHHHHHHHHHHHHHH
Confidence 6778888877554332233355 41 2 222 2345666555 666655444
No 6
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=6.10 E-value=6.6e+02 Score=16.72 Aligned_cols=35 Identities=17% Similarity=0.353 Sum_probs=24.8
Q ss_pred ccCCCCchhhHHHHHHHHHHHhHHHHHHHHHHHHhCCCC
Q 014923 316 KRSGVGVSLIMGIIAIRYILLPLLGIVIVKAAYRFGFIG 354 (416)
Q Consensus 316 ~~s~l~~~~iv~iv~~RliilPiigv~iv~~~~k~g~~~ 354 (416)
+....|.+.++..+++=++++.+ ++..++|.|+..
T Consensus 4 ~~~~vp~wiIi~s~l~GLllL~l----i~~~LwK~GFFk 38 (42)
T 2k1a_A 4 EERAIPIWWVLVGVLGGLLLLTI----LVLAMWKVGFFK 38 (42)
T ss_dssp SCCCCCHHHHHHHHHHHHHHHHH----HHHHHHHTTTTC
T ss_pred CcCCcchHHHHHHHHHHHHHHHH----HHHHHHHcCccc
Confidence 34567888888888777766553 456678888876
No 7
>1vf5_F Protein PET M; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.25.1 PDB: 2d2c_F* 2e74_F* 2e75_F* 2e76_F* 2zt9_F*
Probab=5.76 E-value=6.4e+02 Score=16.23 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q 014923 76 PVNILLSFLIGSALAWILIKITR 98 (416)
Q Consensus 76 Pvn~ll~~~iG~~lg~~v~~i~~ 98 (416)
..-+...+.+|..+|+++-|+-+
T Consensus 9 A~i~~~LvLvGla~Gf~LLkiqg 31 (35)
T 1vf5_F 9 ALLSFGLIFVGWGLGVLLLKIQG 31 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHhheeec
Confidence 33344566889999999988753
No 8
>1q90_M Cytochrome B6F complex subunit PETM; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.25.1
Probab=5.01 E-value=7.7e+02 Score=16.25 Aligned_cols=23 Identities=17% Similarity=0.511 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q 014923 76 PVNILLSFLIGSALAWILIKITR 98 (416)
Q Consensus 76 Pvn~ll~~~iG~~lg~~v~~i~~ 98 (416)
..-+...+.+|..+|+++-|+-+
T Consensus 10 A~i~~~L~LvGla~Gf~LLkiqg 32 (39)
T 1q90_M 10 ALTMVGMTLVGLAIGFVLLRVES 32 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhc
Confidence 33345566889999999988753
No 9
>1v54_L VIIIA, cytochrome C oxidase polypeptide VIIC; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.6.1 PDB: 1oco_L* 1occ_L* 1ocz_L* 1ocr_L* 1v55_L* 2dyr_L* 2dys_L* 2eij_L* 2eik_L* 2eil_L* 2eim_L* 2ein_L* 2occ_L* 2ybb_W* 2zxw_L* 3abk_L* 3abl_L* 3abm_L* 3ag1_L* 3ag2_L* ...
Probab=4.98 E-value=7.2e+02 Score=16.89 Aligned_cols=23 Identities=13% Similarity=0.167 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 014923 390 SVILLWTYAVAAFALTLWITFYI 412 (416)
Q Consensus 390 S~ilfwqY~~~~vslt~~~t~~l 412 (416)
=.+.+|.|...-++.|+.++.+-
T Consensus 21 ~~~~~~~f~g~GF~~PF~i~~~Q 43 (47)
T 1v54_L 21 LLAMMTLFFGSGFAAPFFIVRHQ 43 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHH
Confidence 34567999999999999988764
No 10
>1q90_G Cytochrome B6F complex subunit PETG; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.26.1
Probab=4.96 E-value=2.6e+02 Score=18.26 Aligned_cols=11 Identities=27% Similarity=0.682 Sum_probs=7.1
Q ss_pred HHHHHHhcchh
Q 014923 263 IIGFVIGTISP 273 (416)
Q Consensus 263 ilg~ivg~ipp 273 (416)
+.|++.|+||-
T Consensus 6 L~GIVlGlipv 16 (37)
T 1q90_G 6 LCGIVLGLVPV 16 (37)
T ss_dssp HHHHHHHHHHH
T ss_pred hhhHHHhhHHH
Confidence 45677777763
Done!