Query 014923
Match_columns 416
No_of_seqs 120 out of 219
Neff 6.5
Searched_HMMs 13730
Date Mon Mar 25 03:32:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014923.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/014923hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74d2 f.23.12.1 (D:12-45) IS 6.1 1.2E+02 0.0089 17.6 1.6 28 252-279 5-32 (34)
2 d2nwwa1 f.49.1.1 (A:12-416) Pr 6.0 6.9E+02 0.05 21.7 8.1 81 259-344 6-89 (405)
3 d1q90g_ f.23.26.1 (G:) PetG su 4.0 1.7E+02 0.012 16.6 1.2 11 263-273 6-16 (30)
4 d1g8fa3 c.37.1.15 (A:390-511) 3.4 3.3E+02 0.024 20.5 2.9 51 100-150 1-54 (122)
5 d1tbaa_ a.15.1.1 (A:) TAF(II)2 3.2 1.6E+02 0.012 19.9 0.6 15 33-47 36-50 (67)
6 d2axtt1 f.23.34.1 (T:1-30) Pho 3.1 4.1E+02 0.03 14.6 2.3 17 145-161 3-20 (30)
7 d2nwwa1 f.49.1.1 (A:12-416) Pr 3.1 7.4E+02 0.054 21.5 5.7 54 51-104 46-103 (405)
8 d1m8pa3 c.37.1.15 (A:391-573) 3.0 3E+02 0.022 19.9 2.3 23 100-122 1-23 (183)
9 d2fnaa1 a.4.5.11 (A:284-356) H 2.6 3.6E+02 0.026 18.5 2.0 18 345-362 46-71 (73)
10 d2oara1 f.16.1.1 (A:10-118) Ga 2.6 4.2E+02 0.031 19.3 2.6 17 326-342 21-37 (109)
No 1
>d2e74d2 f.23.12.1 (D:12-45) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=6.12 E-value=1.2e+02 Score=17.63 Aligned_cols=28 Identities=14% Similarity=0.433 Sum_probs=22.7
Q ss_pred hhccChhHHHHHHHHHHhcchhhhhhhc
Q 014923 252 KMIFAPSTIAAIIGFVIGTISPFRKVIV 279 (416)
Q Consensus 252 ~~~~~Pp~ia~ilg~ivg~ippLk~l~~ 279 (416)
++||+=-+.+.+-|...|..-|+-+-|+
T Consensus 5 rqfmnlltfgt~tg~alg~lypvvkyfi 32 (34)
T d2e74d2 5 RQFMNLLAFGTVTGVALGALYPLVKYFI 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhhHHHHHHhhhhhHHhhcC
Confidence 5566666899999999999888877776
No 2
>d2nwwa1 f.49.1.1 (A:12-416) Proton glutamate symport protein {Pyrococcus horikoshii [TaxId: 53953]}
Probab=5.99 E-value=6.9e+02 Score=21.73 Aligned_cols=81 Identities=14% Similarity=0.183 Sum_probs=43.4
Q ss_pred HHHHHHHHHHhcchhhhhhhcc--CCCchhhHHH-HHHHhhcchhhHHHHHhhhhcccCCccCCCCchhhHHHHHHHHHH
Q 014923 259 TIAAIIGFVIGTISPFRKVIVG--ESAPLRVLDS-SAALVGEAAIPAMTLVIGANLLSGLKRSGVGVSLIMGIIAIRYIL 335 (416)
Q Consensus 259 ~ia~ilg~ivg~ippLk~l~~~--~~apL~~i~d-s~~~lG~a~IP~~llvLGa~L~~g~~~s~l~~~~iv~iv~~Rlii 335 (416)
.+|.++|+++|.+=+ ..-.. ...-++++.| .++.+--..+|++..-+=...++ .+.++ .+.+..-++.-+++
T Consensus 6 li~lv~Gi~~G~~~~--~~~~~~~~~~~l~~~g~lFi~lL~m~v~PLIf~sii~gi~~-L~~~~--~gkl~~~ti~~~l~ 80 (405)
T d2nwwa1 6 LIGLILGAIVGLILG--HYGYAHAVHTYVKPFGDLFVRLLKMLVMPIVFASLVVGAAS-ISPAR--LGRVGVKIVVYYLL 80 (405)
T ss_dssp HHHHHHHHHHHHHHH--TTTTHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHTTTCS-CTTTT--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc--cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccchh--cchHHHHHHHHHHH
Confidence 567777777776411 10000 0122445544 35667778889988776666655 44333 34455555555555
Q ss_pred HhHHHHHHH
Q 014923 336 LPLLGIVIV 344 (416)
Q Consensus 336 lPiigv~iv 344 (416)
.=++...+.
T Consensus 81 tt~iA~~ig 89 (405)
T d2nwwa1 81 TSAFAVTLG 89 (405)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555444443
No 3
>d1q90g_ f.23.26.1 (G:) PetG subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=4.05 E-value=1.7e+02 Score=16.63 Aligned_cols=11 Identities=27% Similarity=0.682 Sum_probs=7.6
Q ss_pred HHHHHHhcchh
Q 014923 263 IIGFVIGTISP 273 (416)
Q Consensus 263 ilg~ivg~ipp 273 (416)
+.|++.|+||-
T Consensus 6 l~GivlGlipi 16 (30)
T d1q90g_ 6 LCGIVLGLVPV 16 (30)
T ss_dssp HHHHHHHHHHH
T ss_pred HHhHHHhhHHH
Confidence 46777777774
No 4
>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=3.40 E-value=3.3e+02 Score=20.46 Aligned_cols=51 Identities=10% Similarity=0.021 Sum_probs=34.5
Q ss_pred CCCccCeeeEEeecCCcc--hhHHHHHHHhhh-cCCCCCCCchhhcchhhHHHH
Q 014923 100 PPHLQGLVIGCCSAGNMG--NLLLIIVPAVCE-ESNSPFGDTSVCSSYGKAYAS 150 (416)
Q Consensus 100 P~~~r~~~i~~~~fgN~g--~LPl~lv~sl~~-~~~~pFg~~~~~~~~G~aYv~ 150 (416)
|++-+||++...+..|+| .|-.++...+-+ +.|-+..-=|..+-+=++|+.
T Consensus 1 Pr~kqgf~i~~tg~~~~gk~~ia~al~~~l~q~~G~R~vtll~~~ni~ri~fva 54 (122)
T d1g8fa3 1 PRPKQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNNKTELLSLI 54 (122)
T ss_dssp CGGGCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTTCHHHHTTH
T ss_pred CCCccceEEEEeCCCCCCHHHHHHHHHHHHHHhcCCcceEEecCCCHHHHHHHH
Confidence 889999999999999997 788888888865 233333210112444466665
No 5
>d1tbaa_ a.15.1.1 (A:) TAF(II)230 TBP-binding fragment {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=3.22 E-value=1.6e+02 Score=19.94 Aligned_cols=15 Identities=7% Similarity=0.160 Sum_probs=13.2
Q ss_pred CCCChhHHhhhhhhh
Q 014923 33 DLLGHSVTHSLNNLV 47 (416)
Q Consensus 33 ~iL~~~~~k~ls~lv 47 (416)
.+|+++.||+|+.+.
T Consensus 36 s~lD~E~k~~L~~Ls 50 (67)
T d1tbaa_ 36 TGFDAELRENIGSLS 50 (67)
T ss_dssp SSCCTTTHHHHTTCT
T ss_pred cccCHHHHHHHHHHh
Confidence 389999999999876
No 6
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=3.13 E-value=4.1e+02 Score=14.63 Aligned_cols=17 Identities=12% Similarity=0.313 Sum_probs=11.4
Q ss_pred hhHHHHHHH-HHHHHHhh
Q 014923 145 GKAYASLSM-VGAIYIWT 161 (416)
Q Consensus 145 G~aYv~~~~-~g~i~~wt 161 (416)
.++|+.+|. +-+.+.+.
T Consensus 3 ~i~yv~ifac~i~lfffa 20 (30)
T d2axtt1 3 TITYVFIFACIIALFFFA 20 (30)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eeehHHHHHHHHHHHHHH
Confidence 478999888 55555443
No 7
>d2nwwa1 f.49.1.1 (A:12-416) Proton glutamate symport protein {Pyrococcus horikoshii [TaxId: 53953]}
Probab=3.09 E-value=7.4e+02 Score=21.49 Aligned_cols=54 Identities=13% Similarity=0.108 Sum_probs=37.8
Q ss_pred hhhhHHHHhhcccc-cc--ccchhhh-HHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc
Q 014923 51 FNPALIGSNLAETI-TY--QSLISLW-FMPVNILLSFLIGSALAWILIKITRTPPHLQ 104 (416)
Q Consensus 51 flP~LiFskla~~i-t~--~~l~~~w-~iPvn~ll~~~iG~~lg~~v~~i~~~P~~~r 104 (416)
..+=|+|..+...+ +. ++.+++. -.-..+++++.++..+|+++..+++|....+
T Consensus 46 ~v~PLIf~sii~gi~~L~~~~~gkl~~~ti~~~l~tt~iA~~igl~~~~~~~pg~~~~ 103 (405)
T d2nwwa1 46 LVMPIVFASLVVGAASISPARLGRVGVKIVVYYLLTSAFAVTLGIIMARLFNPGAGIH 103 (405)
T ss_dssp HHHHHHHHHHHTTTCSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCCC
T ss_pred HHHHHHHHHHHHHHHhccchhcchHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 34557888887776 33 3444443 3445577788999999999999999977543
No 8
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Probab=2.95 E-value=3e+02 Score=19.88 Aligned_cols=23 Identities=26% Similarity=0.205 Sum_probs=19.9
Q ss_pred CCCccCeeeEEeecCCcchhHHH
Q 014923 100 PPHLQGLVIGCCSAGNMGNLLLI 122 (416)
Q Consensus 100 P~~~r~~~i~~~~fgN~g~LPl~ 122 (416)
|++.+|.+|.-+|.+-+|-==++
T Consensus 1 ~~~~~g~~I~l~G~~GsGKTTia 23 (183)
T d1m8pa3 1 PRATQGFTIFLTGYMNSGKDAIA 23 (183)
T ss_dssp CTTTCCEEEEEECSTTSSHHHHH
T ss_pred CCCCCCeEEEEECCCCCCHHHHH
Confidence 88999999999999999876655
No 9
>d2fnaa1 a.4.5.11 (A:284-356) Hypothetical protein SSO1545, C-terminal domain {Sulfolobus solfataricus [TaxId: 2287]}
Probab=2.58 E-value=3.6e+02 Score=18.47 Aligned_cols=18 Identities=17% Similarity=0.241 Sum_probs=11.9
Q ss_pred HHHHHhCCCC--------CChHHHHH
Q 014923 345 KAAYRFGFIG--------SDSLYQFI 362 (416)
Q Consensus 345 ~~~~k~g~~~--------~Dpl~~fV 362 (416)
+-+.|+||+. .||+...+
T Consensus 46 ~nL~k~~~iek~~~~Y~i~DPv~~~a 71 (73)
T d2fnaa1 46 TQLTKHSWIIKEGEKYCPSEPLISLA 71 (73)
T ss_dssp HHHHHTTSEEESSSCEEESSHHHHHH
T ss_pred HHHHHcCceeecCCeeccCcHHHHHh
Confidence 4567777762 57877665
No 10
>d2oara1 f.16.1.1 (A:10-118) Gated mechanosensitive channel {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=2.56 E-value=4.2e+02 Score=19.28 Aligned_cols=17 Identities=18% Similarity=0.251 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHhHHHHH
Q 014923 326 MGIIAIRYILLPLLGIV 342 (416)
Q Consensus 326 v~iv~~RliilPiigv~ 342 (416)
+.-.++.-+++|++|..
T Consensus 21 iV~slV~diimPlIg~i 37 (109)
T d2oara1 21 LVTKFTDSIITPLINRI 37 (109)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcchHhhc
Confidence 34456677899999864
Done!