BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014925
(416 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QE7|G Chain G, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
Length = 286
Score = 183 bits (465), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 112/322 (34%), Positives = 173/322 (53%), Gaps = 40/322 (12%)
Query: 52 GLRELKERLNTVKNTQKITEAMKLVAAARVRKAQEAVISSRPFVEKLVEFLYVINEQLQL 111
G+RE+K R+ +VKNT++IT+AMK+VAAA++R+AQE ++RP+ +K+ E + I +
Sbjct: 3 GMREIKRRIRSVKNTRQITKAMKMVAAAKLRRAQETAENARPYADKIKEVISSIAAGTK- 61
Query: 112 DDIDVPLTNIRPVKKVAIVIITGDRGLCGGFNKAVIKKAENRMVELKDMGLDCVVISVGK 171
D P+ RPVKK ++IT DRGL G +N +++ + E + V+ +VG+
Sbjct: 62 -DFSHPMLEARPVKKTGYMVITSDRGLAGPYNANILRLVSKTIEERHQSKDEYVIFAVGR 120
Query: 172 KGNAYFRHRSNVSVIRCIEG-EGFYTVKEAQTIADNVFSLFVSEEVDKVELVYTKFVSLV 230
KG +F+ R V+ + G ++ E Q IA + +F E DK+ + Y +FVS +
Sbjct: 121 KGRDFFKKR-GYPVVEEVTGISDTPSLTEIQDIAQSAIGMFADETFDKLTIFYNEFVSPI 179
Query: 231 KSDPVIHTLLPLSMKGVICNENGMCVDAVEDELFRLTTNEGKMIVERDSVTFNKGELSPL 290
PV LLPL+ + V+ V A E
Sbjct: 180 VQRPVEKQLLPLTSEEVLDG----PVSAYE------------------------------ 205
Query: 291 MLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAY 350
+E D +L+ ++P Y + I AL ++ ASE ARM+AM ATDNA E+ + L++ +
Sbjct: 206 --YEPDSESVLEVLLPKYAETLIYSALLDAKASEFGARMTAMGNATDNATEMLETLTLQF 263
Query: 351 NQERQAKITGELLEIVAGAEAL 372
N+ RQA IT E+ EIVAGA AL
Sbjct: 264 NRARQAAITQEIAEIVAGANAL 285
>pdb|3OAA|G Chain G, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|O Chain O, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|W Chain W, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|EE Chain e, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
Length = 286
Score = 160 bits (404), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 103/324 (31%), Positives = 170/324 (52%), Gaps = 40/324 (12%)
Query: 51 CGLRELKERLNTVKNTQKITEAMKLVAAARVRKAQEAVISSRPFVEKLVEFL-YVINEQL 109
G +E++ ++ +V+NTQKIT+AM++VAA+++RK+Q+ + +SRP+ E + + + ++ + L
Sbjct: 1 AGAKEIRSKIASVQNTQKITKAMEMVAASKMRKSQDRMAASRPYAETMRKVIGHLAHGNL 60
Query: 110 QLDDIDVPLTNIRPVKKVAIVIITGDRGLCGGFNKAVIKKAENRMVELKDMGLDCVVISV 169
+ P R VK+V ++++ DRGLCGG N + KK M D G+ C + +
Sbjct: 61 EYKH---PYLEDRDVKRVGYLVVSTDRGLCGGLNINLFKKLLAEMKTWTDKGVQCDLAMI 117
Query: 170 GKKGNAYFRHRSNVSVIRCIEGEGFY-TVKEAQTIADNVFSLFVSEEVDKVELVYTKFVS 228
G KG ++F +V+ + G G ++ E + + +DK+ +V KF++
Sbjct: 118 GSKGVSFFNSVGG-NVVAQVTGMGDNPSLSELIGPVKVMLQAYDEGRLDKLYIVSNKFIN 176
Query: 229 LVKSDPVIHTLLPLSMKGVICNENGMCVDAVEDELFRLTTNEGKMIVERDSVTFNKGELS 288
+ P I LLPL A +D+ + + +
Sbjct: 177 TMSQVPTISQLLPLP--------------ASDDDDLKHKSWD------------------ 204
Query: 289 PLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSV 348
L+E DP +LD ++ Y+ SQ+ + + E+ ASE AARM AM ATDN L K L +
Sbjct: 205 --YLYEPDPKALLDTLLRRYVESQVYQGVVENLASEQAARMVAMKAATDNGGSLIKELQL 262
Query: 349 AYNQERQAKITGELLEIVAGAEAL 372
YN+ RQA IT EL EIV+GA A+
Sbjct: 263 VYNKARQASITQELTEIVSGAAAV 286
>pdb|2XOK|G Chain G, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
Length = 311
Score = 109 bits (272), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 95/332 (28%), Positives = 160/332 (48%), Gaps = 57/332 (17%)
Query: 48 PIR--CGLRELKERLNTVKNTQKITEAMKLVAAARVRKAQEAVISSRPFVEKLVEFLYVI 105
P+R L+E++ RL ++KN +KIT+ MK+VA+ R+ KA++A IS++ E E L+
Sbjct: 29 PVRTYATLKEVEMRLKSIKNIEKITKTMKIVASTRLSKAEKAKISAKKMDE--AEQLFYK 86
Query: 106 NEQLQLDDIDVPLTNIRPVKKVAIVIITGDRGLCGGFNKAVIKKAENRMVELKDMGLDCV 165
N + + ++DV T K++ IV IT D+GLCG + + K + + + D V
Sbjct: 87 NAETK--NLDVEATETGAPKEL-IVAITSDKGLCGSIHSQLAKAVRRHLNDQPNA--DIV 141
Query: 166 VISVGKKGNAYFRHRSNVSVIRCIEGEGFYTVKEAQTIADNVFSLFVSEEVDKVELVYTK 225
I K H +N+ + G+ T +E+ IAD + S+ + K+ + Y
Sbjct: 142 TIGDKIKMQLLRTHPNNIKLSINGIGKDAPTFQESALIADKLLSVMKAGTYPKISIFY-- 199
Query: 226 FVSLVKSDPVIHTLLPLSMKGVICNENGMCVDAVEDELFRLTTNEGKMIVERDSVTFNKG 285
+DPV + + + E +F T E S +F K
Sbjct: 200 ------NDPV----------------SSLSFEPSEKPIFNAKTIE-------QSPSFGKF 230
Query: 286 ELS-----PLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNAD 340
E+ P LFE + +Q+L A+ + +A+E++AR +AM A+ NA
Sbjct: 231 EIDTDANVPRDLFE------------YTLANQMLTAMAQGYAAEISARRNAMDNASKNAG 278
Query: 341 ELKKNLSVAYNQERQAKITGELLEIVAGAEAL 372
++ S+ YN+ RQA IT EL++I+ GA +L
Sbjct: 279 DMINRYSILYNRTRQAVITNELVDIITGASSL 310
>pdb|2HLD|G Chain G, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|P Chain P, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|Y Chain Y, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|3FKS|G Chain G, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|P Chain P, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|Y Chain Y, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|2WPD|G Chain G, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|3OEE|G Chain G, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|P Chain P, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|Y Chain Y, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEH|G Chain G, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|P Chain P, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|Y Chain Y, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OFN|G Chain G, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|P Chain P, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|Y Chain Y, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3ZRY|G Chain G, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|4B2Q|G Chain G, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|GG Chain g, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|3ZIA|G Chain G, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|Q Chain Q, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
Length = 278
Score = 107 bits (267), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 93/325 (28%), Positives = 157/325 (48%), Gaps = 55/325 (16%)
Query: 53 LRELKERLNTVKNTQKITEAMKLVAAARVRKAQEAVISSRPFVEKLVEFLYVINEQLQLD 112
L+E++ RL ++KN +KIT+ MK+VA+ R+ KA++A IS++ E E L+ N + +
Sbjct: 3 LKEVEMRLKSIKNIEKITKTMKIVASTRLSKAEKAKISAKKMDE--AEQLFYKNAETK-- 58
Query: 113 DIDVPLTNIRPVKKVAIVIITGDRGLCGGFNKAVIKKAENRMVELKDMGLDCVVISVGKK 172
++DV T K++ IV IT D+GLCG + + K + + + D V I K
Sbjct: 59 NLDVEATETGAPKEL-IVAITSDKGLCGSIHSQLAKAVRRHLNDQPNA--DIVTIGDKIK 115
Query: 173 GNAYFRHRSNVSVIRCIEGEGFYTVKEAQTIADNVFSLFVSEEVDKVELVYTKFVSLVKS 232
H +N+ + G+ T +E+ IAD + S+ + K+ + Y +
Sbjct: 116 MQLLRTHPNNIKLSINGIGKDAPTFQESALIADKLLSVMKAGTYPKISIFY--------N 167
Query: 233 DPVIHTLLPLSMKGVICNENGMCVDAVEDELFRLTTNEGKMIVERDSVTFNKGELS---- 288
DPV + + + E +F T E S +F K E+
Sbjct: 168 DPV----------------SSLSFEPSEKPIFNAKTIE-------QSPSFGKFEIDTDAN 204
Query: 289 -PLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLS 347
P LFE + +Q+L A+ + +A+E++AR +AM A+ NA ++ S
Sbjct: 205 VPRDLFE------------YTLANQMLTAMAQGYAAEISARRNAMDNASKNAGDMINRYS 252
Query: 348 VAYNQERQAKITGELLEIVAGAEAL 372
+ YN+ RQA IT EL++I+ GA +L
Sbjct: 253 ILYNRTRQAVITNELVDIITGASSL 277
>pdb|3OE7|G Chain G, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|P Chain P, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|Y Chain Y, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
Length = 278
Score = 105 bits (263), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 92/325 (28%), Positives = 156/325 (48%), Gaps = 55/325 (16%)
Query: 53 LRELKERLNTVKNTQKITEAMKLVAAARVRKAQEAVISSRPFVEKLVEFLYVINEQLQLD 112
L+E++ RL ++KN +KIT+ MK+VA+ R+ KA++A IS++ E E L+ N + +
Sbjct: 3 LKEVEMRLKSIKNIEKITKTMKIVASTRLSKAEKAKISAKKMDE--AEQLFYKNAETK-- 58
Query: 113 DIDVPLTNIRPVKKVAIVIITGDRGLCGGFNKAVIKKAENRMVELKDMGLDCVVISVGKK 172
++DV T K++ IV IT D+GLCG + + K + + + D V I K
Sbjct: 59 NLDVEATETGAPKEL-IVAITSDKGLCGSIHSQLAKAVRRHLNDQPNA--DIVTIGDKIK 115
Query: 173 GNAYFRHRSNVSVIRCIEGEGFYTVKEAQTIADNVFSLFVSEEVDKVELVYTKFVSLVKS 232
H +N+ + G+ T +E+ IAD + S+ + K+ + Y +
Sbjct: 116 MQLLRTHPNNIKLSINGIGKDAPTFQESALIADKLLSVMKAGTYPKISIFY--------N 167
Query: 233 DPVIHTLLPLSMKGVICNENGMCVDAVEDELFRLTTNEGKMIVERDSVTFNKGELS---- 288
DPV + + + E +F T E S +F K E+
Sbjct: 168 DPV----------------SSLSFEPSEKPIFNAKTIE-------QSPSFGKFEIDTDAN 204
Query: 289 -PLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLS 347
P LFE + +Q+L A+ + +A+E++AR +AM A+ NA ++ S
Sbjct: 205 VPRDLFE------------YTLANQMLTAMAQGYAAEISARRNAMDNASKNAGDMINRYS 252
Query: 348 VAYNQERQAKITGELLEIVAGAEAL 372
+ YN+ RQA IT EL++ + GA +L
Sbjct: 253 ILYNRTRQAVITNELVDTITGASSL 277
>pdb|1FS0|G Chain G, Complex Of GammaEPSILON ATP SYNTHASE FROM E.COLI
Length = 230
Score = 105 bits (261), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 75/267 (28%), Positives = 131/267 (49%), Gaps = 40/267 (14%)
Query: 68 KITEAMKLVAAARVRKAQEAVISSRPFVEKLVEFL-YVINEQLQLDDIDVPLTNIRPVKK 126
KIT+AM++VAA+++RK+Q+ + +SRP+ E + + + ++ + L+ P R VK+
Sbjct: 1 KITKAMEMVAASKMRKSQDRMAASRPYAETMRKVIGHLAHGNLEYKH---PYLEDRDVKR 57
Query: 127 VAIVIITGDRGLCGGFNKAVIKKAENRMVELKDMGLDCVVISVGKKGNAYFRHRSNVSVI 186
V ++++ DRGLCGG N + KK M D G+ C + +G KG ++F +V+
Sbjct: 58 VGYLVVSTDRGLCGGLNINLFKKLLAEMKTWTDKGVQCDLAMIGSKGVSFFNSVGG-NVV 116
Query: 187 RCIEGEGFY-TVKEAQTIADNVFSLFVSEEVDKVELVYTKFVSLVKSDPVIHTLLPLSMK 245
+ G G ++ E + + +DK+ +V KF++ + P I LLPL
Sbjct: 117 AQVTGMGDNPSLSELIGPVKVMLQAYDEGRLDKLYIVSNKFINTMSQVPTISQLLPLP-- 174
Query: 246 GVICNENGMCVDAVEDELFRLTTNEGKMIVERDSVTFNKGELSPLMLFEQDPAQILDAMM 305
A +D+ + + + L+E DP +LD ++
Sbjct: 175 ------------ASDDDDLKHKSWD--------------------YLYEPDPKALLDTLL 202
Query: 306 PLYMNSQILRALQESFASEVAARMSAM 332
Y+ SQ+ + + E+ ASE AARM AM
Sbjct: 203 RRYVESQVYQGVVENLASEQAARMVAM 229
>pdb|2F43|G Chain G, Rat Liver F1-atpase
Length = 273
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 86/326 (26%), Positives = 155/326 (47%), Gaps = 62/326 (19%)
Query: 53 LRELKERLNTVKNTQKITEAMKLVAAARVRKAQEAVISSRPFVEKLVEFLYVINEQLQLD 112
L+++ RL ++KN QKIT++MK+VAAA+ +A+ + +R + + LY +
Sbjct: 3 LKDITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARVYGTGSLA-LY------EKA 55
Query: 113 DIDVPLTNIRPVKKVAIVIITGDRGLCGGFNKAVIKKAENRMVELKDMGLDCVVISVGKK 172
+I P KK I+ ++ DRGLCG + +V K+ +N M L G + +++ +G+K
Sbjct: 56 EIKGP----EDKKKHLIIGVSSDRGLCGAIHSSVAKQMKNDMAALTAAGKEVMIVGIGEK 111
Query: 173 -GNAYFRHRSNVSVIRCIE-GEGFYTVKEAQTIADNVFSLFVSEEVDKVELVYTKFVSLV 230
+ +R S+ ++ + G T +A IA + L E D+ +++ +F S++
Sbjct: 112 IKSILYRTHSDQFLVSFKDVGRKPPTFGDASVIALEL--LNSGYEFDEGSIIFNQFKSVI 169
Query: 231 ----KSDPVIHTLLPLSMKGVICNENGMCVDAVEDELFRLTTNEGKMIVERDSVTFNKGE 286
+ P+ S V+ EN
Sbjct: 170 SYKTEEKPI------FSFSTVVAAEN---------------------------------- 189
Query: 287 LSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNL 346
+ +++ A +L + + I +L+ES SE +ARM+AM A+ NA ++ L
Sbjct: 190 ---MSIYDDIDADVLQNYQEYNLANIIYYSLKESTTSEQSARMTAMDNASKNASDMIDKL 246
Query: 347 SVAYNQERQAKITGELLEIVAGAEAL 372
++ +N+ RQA IT EL+EI++GA AL
Sbjct: 247 TLTFNRTRQAVITKELIEIISGAAAL 272
>pdb|1MAB|G Chain G, Rat Liver F1-Atpase
Length = 270
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 85/321 (26%), Positives = 152/321 (47%), Gaps = 54/321 (16%)
Query: 54 RELKERLNTVKNTQKITEAMKLVAAARVRKAQEAVISSRPFVEKLVEFLYVINEQLQLDD 113
R++ RL ++KN QKIT++MK+VAAA+ +A+ + +R + + LY + +
Sbjct: 1 RDITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARVYGTGSLA-LY------EKAE 53
Query: 114 IDVPLTNIRPVKKVAIVIITGDRGLCGGFNKAVIKKAENRMVELKDMGLDCVVISVGKK- 172
I P KK I+ ++ DRGLCG + +V K+ +N M L G + +++ +G+K
Sbjct: 54 IKGP----EDKKKHLIIGVSSDRGLCGAIHSSVAKQMKNDMAALTAAGKEVMIVGIGEKI 109
Query: 173 GNAYFRHRSNVSVIRCIE-GEGFYTVKEAQTIADNVFSLFVSEEVDKVELVYTKFVSLVK 231
+ +R S+ ++ + G T +A IA + L E D+ +++ +F S++
Sbjct: 110 KSILYRTHSDQFLVSFKDVGRKPPTFGDASVIALEL--LNSGYEFDEGSIIFNQFKSVIS 167
Query: 232 SDPVIHTLLPLSMKGVICNENGMCVDAVEDELFRLTTNEGKMIVERDSVTFNKGELSPLM 291
+ S V+ EN +
Sbjct: 168 YKTEEKPIFSFST--VVAAEN-------------------------------------MS 188
Query: 292 LFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYN 351
+++ A +L + + I +L+ES SE +ARM+AM A+ NA ++ L++ +N
Sbjct: 189 IYDDIDADVLQNYQEYNLANIIYYSLKESTTSEQSARMTAMDNASKNASDMIDKLTLTFN 248
Query: 352 QERQAKITGELLEIVAGAEAL 372
+ RQA IT EL+EI++GA AL
Sbjct: 249 RTRQAVITKELIEIISGAAAL 269
>pdb|2W6E|G Chain G, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6F|G Chain G, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6I|G Chain G, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6J|G Chain G, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6G|G Chain G, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6H|G Chain G, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a
Length = 298
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 92/323 (28%), Positives = 153/323 (47%), Gaps = 56/323 (17%)
Query: 53 LRELKERLNTVKNTQKITEAMKLVAAARVRKAQEAVISSRPF-VEKLVEFLYVINEQLQL 111
L+++ RL ++KN QKIT++MK+VAAA+ +A+ + +R + V L LY +
Sbjct: 28 LKDITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARVYGVGSLA--LY------EK 79
Query: 112 DDIDVPLTNIRPVKKVAIVIITGDRGLCGGFNKAVIKKAENRMVELKDMGLDCVVISVGK 171
DI P KK I+ ++ DRGLCG + +V K+ ++ L G + +I VG
Sbjct: 80 ADIKTP----EDKKKHLIIGVSSDRGLCGAIHSSVAKQMKSEAANLAAAGKEVKIIGVGD 135
Query: 172 KGNAYF-RHRSNVSVIRCIE-GEGFYTVKEAQTIADNVFSLFVSEEVDKVELVYTKFVSL 229
K + R S+ ++ E G T +A IA + L E D+ +++ +F S+
Sbjct: 136 KIRSILHRTHSDQFLVTFKEVGRRPPTFGDASVIALEL--LNSGYEFDEGSIIFNRFRSV 193
Query: 230 VKSDPVIHTLLPLSMKGVICNENGMCVDAVEDELFRLTTNEGKMIVERDSVTFNKGELSP 289
+ S K E K I D+++
Sbjct: 194 I------------SYK-----------------------TEEKPIFSLDTIS----SAES 214
Query: 290 LMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVA 349
+ +++ A +L + + I +L+ES SE +ARM+AM A+ NA E+ L++
Sbjct: 215 MSIYDDIDADVLRNYQEYSLANIIYYSLKESTTSEQSARMTAMDNASKNASEMIDKLTLT 274
Query: 350 YNQERQAKITGELLEIVAGAEAL 372
+N+ RQA IT EL+EI++GA AL
Sbjct: 275 FNRTRQAVITKELIEIISGAAAL 297
>pdb|1COW|G Chain G, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1EFR|G Chain G, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1BMF|G Chain G, Bovine Mitochondrial F1-Atpase
pdb|1NBM|G Chain G, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1QO1|G Chain G, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1E1Q|G Chain G, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1R|G Chain G, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E79|G Chain G, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1H8H|G Chain G, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8E|G Chain G, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1W0J|G Chain G, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|G Chain G, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|2CK3|G Chain G, Azide Inhibited Bovine F1-Atpase
pdb|2JIZ|G Chain G, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|N Chain N, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JJ1|G Chain G, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|N Chain N, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ2|G Chain G, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|N Chain N, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2V7Q|G Chain G, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2WSS|G Chain G, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|P Chain P, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2XND|G Chain G, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
Length = 272
Score = 95.9 bits (237), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 92/323 (28%), Positives = 153/323 (47%), Gaps = 56/323 (17%)
Query: 53 LRELKERLNTVKNTQKITEAMKLVAAARVRKAQEAVISSRPF-VEKLVEFLYVINEQLQL 111
L+++ RL ++KN QKIT++MK+VAAA+ +A+ + +R + V L LY +
Sbjct: 3 LKDITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARVYGVGSLA--LY------EK 54
Query: 112 DDIDVPLTNIRPVKKVAIVIITGDRGLCGGFNKAVIKKAENRMVELKDMGLDCVVISVGK 171
DI P KK I+ ++ DRGLCG + +V K+ ++ L G + +I VG
Sbjct: 55 ADIKTP----EDKKKHLIIGVSSDRGLCGAIHSSVAKQMKSEAANLAAAGKEVKIIGVGD 110
Query: 172 KGNAYF-RHRSNVSVIRCIE-GEGFYTVKEAQTIADNVFSLFVSEEVDKVELVYTKFVSL 229
K + R S+ ++ E G T +A IA + L E D+ +++ +F S+
Sbjct: 111 KIRSILHRTHSDQFLVTFKEVGRRPPTFGDASVIALEL--LNSGYEFDEGSIIFNRFRSV 168
Query: 230 VKSDPVIHTLLPLSMKGVICNENGMCVDAVEDELFRLTTNEGKMIVERDSVTFNKGELSP 289
+ S K E K I D+++
Sbjct: 169 I------------SYK-----------------------TEEKPIFSLDTIS----SAES 189
Query: 290 LMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVA 349
+ +++ A +L + + I +L+ES SE +ARM+AM A+ NA E+ L++
Sbjct: 190 MSIYDDIDADVLRNYQEYSLANIIYYSLKESTTSEQSARMTAMDNASKNASEMIDKLTLT 249
Query: 350 YNQERQAKITGELLEIVAGAEAL 372
+N+ RQA IT EL+EI++GA AL
Sbjct: 250 FNRTRQAVITKELIEIISGAAAL 272
>pdb|2JDI|G Chain G, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|4ASU|G Chain G, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
Length = 273
Score = 95.9 bits (237), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 92/323 (28%), Positives = 153/323 (47%), Gaps = 56/323 (17%)
Query: 53 LRELKERLNTVKNTQKITEAMKLVAAARVRKAQEAVISSRPF-VEKLVEFLYVINEQLQL 111
L+++ RL ++KN QKIT++MK+VAAA+ +A+ + +R + V L LY +
Sbjct: 3 LKDITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARVYGVGSLA--LY------EK 54
Query: 112 DDIDVPLTNIRPVKKVAIVIITGDRGLCGGFNKAVIKKAENRMVELKDMGLDCVVISVGK 171
DI P KK I+ ++ DRGLCG + +V K+ ++ L G + +I VG
Sbjct: 55 ADIKTP----EDKKKHLIIGVSSDRGLCGAIHSSVAKQMKSEAANLAAAGKEVKIIGVGD 110
Query: 172 KGNAYF-RHRSNVSVIRCIE-GEGFYTVKEAQTIADNVFSLFVSEEVDKVELVYTKFVSL 229
K + R S+ ++ E G T +A IA + L E D+ +++ +F S+
Sbjct: 111 KIRSILHRTHSDQFLVTFKEVGRRPPTFGDASVIALEL--LNSGYEFDEGSIIFNRFRSV 168
Query: 230 VKSDPVIHTLLPLSMKGVICNENGMCVDAVEDELFRLTTNEGKMIVERDSVTFNKGELSP 289
+ S K E K I D+++
Sbjct: 169 I------------SYK-----------------------TEEKPIFSLDTIS----SAES 189
Query: 290 LMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVA 349
+ +++ A +L + + I +L+ES SE +ARM+AM A+ NA E+ L++
Sbjct: 190 MSIYDDIDADVLRNYQEYSLANIIYYSLKESTTSEQSARMTAMDNASKNASEMIDKLTLT 249
Query: 350 YNQERQAKITGELLEIVAGAEAL 372
+N+ RQA IT EL+EI++GA AL
Sbjct: 250 FNRTRQAVITKELIEIISGAAAL 272
>pdb|1OHH|G Chain G, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
Length = 100
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 48/76 (63%), Gaps = 4/76 (5%)
Query: 305 MPLYMNSQILRALQESFA----SEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITG 360
M + +++ A+ S A SE +ARM+AM A+ NA E+ L++ +N+ RQA IT
Sbjct: 23 MKMVAAAKLCGAIHSSVAKQTTSEQSARMTAMDNASKNASEMIDKLTLTFNRTRQAVITK 82
Query: 361 ELLEIVAGAEALTQIR 376
EL+EI++GA AL ++
Sbjct: 83 ELIEIISGAAALYSLK 98
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 25/29 (86%)
Query: 53 LRELKERLNTVKNTQKITEAMKLVAAARV 81
L+++ RL ++KN QKIT++MK+VAAA++
Sbjct: 3 LKDITRRLKSIKNIQKITKSMKMVAAAKL 31
>pdb|3TEF|A Chain A, Crystal Structure Of The Periplasmic
Catecholate-Siderophore Binding Protein Vctp From
Vibrio Cholerae
Length = 292
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 29 DYLCNFSSRKYPSKSSVFTP 48
DYL + S KYPS S+F P
Sbjct: 51 DYLAKYKSDKYPSAGSLFEP 70
>pdb|1X5O|A Chain A, Solution Structure Of Rrm Domain In Rna Binding Motif,
Single-Stranded Interacting Protein 1
Length = 114
Score = 30.4 bits (67), Expect = 2.2, Method: Composition-based stats.
Identities = 18/81 (22%), Positives = 34/81 (41%)
Query: 294 EQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQE 353
EQDP + + +PL M+ Q L + + F ++ R+ S+ T + S +
Sbjct: 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEA 81
Query: 354 RQAKITGELLEIVAGAEALTQ 374
G+ ++ G A T+
Sbjct: 82 VIGHFNGKFIKTPPGVSAPTE 102
>pdb|1SW6|A Chain A, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
pdb|1SW6|B Chain B, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
Length = 327
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 53/129 (41%), Gaps = 13/129 (10%)
Query: 276 ERDSVTFNKGELSPLMLFEQD--------PAQILDAMMPLYMNSQILRALQESFASEVA- 326
E + N P++ F D P +I+ A+ +N + E+F +
Sbjct: 13 ENNGTDDNDRTAGPIITFTHDLTSDFLSSPLKIMKALPSPVVNDNEQKMKLEAFLQRLLF 72
Query: 327 ARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEALTQIRLRVP-SFHGH 385
+ M T+ +N + + + NQ++Q LL+ V A TQ+ L +P HG+
Sbjct: 73 PEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGN 132
Query: 386 VSFLHIIWL 394
LH WL
Sbjct: 133 TP-LH--WL 138
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.134 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,539,223
Number of Sequences: 62578
Number of extensions: 385117
Number of successful extensions: 998
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 958
Number of HSP's gapped (non-prelim): 26
length of query: 416
length of database: 14,973,337
effective HSP length: 101
effective length of query: 315
effective length of database: 8,652,959
effective search space: 2725682085
effective search space used: 2725682085
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)