Query 014925
Match_columns 416
No_of_seqs 185 out of 1130
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 01:24:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014925.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014925hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0224 AtpG F0F1-type ATP syn 100.0 1.8E-84 3.9E-89 634.3 32.5 286 54-373 1-287 (287)
2 PRK13427 F0F1 ATP synthase sub 100.0 2.6E-80 5.7E-85 611.0 36.7 288 50-373 1-289 (289)
3 PRK14111 F0F1 ATP synthase sub 100.0 4.9E-80 1.1E-84 609.4 37.1 288 50-373 1-289 (290)
4 PRK13423 F0F1 ATP synthase sub 100.0 6.4E-79 1.4E-83 600.9 36.8 287 50-373 1-287 (288)
5 PRK13425 F0F1 ATP synthase sub 100.0 6.4E-79 1.4E-83 601.7 36.5 286 50-373 1-290 (291)
6 PRK13426 F0F1 ATP synthase sub 100.0 5.1E-79 1.1E-83 602.4 35.8 289 50-371 1-290 (291)
7 PRK13424 F0F1 ATP synthase sub 100.0 1.2E-78 2.6E-83 599.8 37.0 289 50-373 1-290 (291)
8 PRK13422 F0F1 ATP synthase sub 100.0 2E-78 4.3E-83 600.0 35.7 295 50-372 1-298 (298)
9 PF00231 ATP-synt: ATP synthas 100.0 1.1E-78 2.3E-83 599.5 30.3 289 51-372 1-290 (290)
10 PRK14110 F0F1 ATP synthase sub 100.0 1.1E-77 2.3E-82 593.0 36.1 286 52-373 5-291 (291)
11 TIGR01146 ATPsyn_F1gamma ATP s 100.0 5.2E-77 1.1E-81 587.0 36.2 287 50-372 1-287 (287)
12 PRK05621 F0F1 ATP synthase sub 100.0 1.2E-76 2.6E-81 583.5 35.8 284 50-372 1-284 (284)
13 TIGR03323 alt_F1F0_F1_gam alte 100.0 3.3E-74 7.1E-79 566.7 33.1 280 56-372 1-285 (285)
14 KOG1531 F0F1-type ATP synthase 100.0 1.8E-71 3.9E-76 529.7 24.4 275 50-373 28-304 (304)
15 PF00700 Flagellin_C: Bacteria 77.6 19 0.00041 28.7 8.4 54 319-372 12-65 (86)
16 PF08967 DUF1884: Domain of un 50.2 29 0.00062 28.6 4.2 36 144-179 8-43 (85)
17 KOG3287 Membrane trafficking p 43.8 46 0.001 32.2 5.2 44 48-93 150-193 (236)
18 PF10138 vWA-TerF-like: vWA fo 38.1 1.9E+02 0.0042 27.6 8.5 100 91-210 82-186 (200)
19 PF15019 C9orf72-like: C9orf72 35.9 1E+02 0.0022 29.9 6.4 76 314-404 70-150 (233)
20 PF14156 AbbA_antirepres: Anti 33.0 2.3E+02 0.005 22.0 6.4 37 320-356 25-63 (63)
21 PRK04456 acetyl-CoA decarbonyl 32.5 75 0.0016 33.8 5.1 24 129-152 202-226 (463)
22 PF10498 IFT57: Intra-flagella 31.2 2.3E+02 0.005 29.4 8.4 57 306-369 261-317 (359)
23 smart00216 VWD von Willebrand 27.5 21 0.00046 31.6 0.1 12 135-146 142-153 (162)
24 PF11629 Mst1_SARAH: C termina 26.7 1.1E+02 0.0023 22.9 3.6 33 321-356 9-41 (49)
25 PF02698 DUF218: DUF218 domain 26.3 3.1E+02 0.0066 23.9 7.4 91 128-227 4-109 (155)
26 PLN03230 acetyl-coenzyme A car 25.8 6.9E+02 0.015 26.7 10.8 120 30-156 63-216 (431)
27 PRK05752 uroporphyrinogen-III 25.6 93 0.002 29.9 4.2 48 126-182 55-102 (255)
28 PF03598 CdhC: CO dehydrogenas 24.7 36 0.00078 35.7 1.2 24 129-152 200-224 (411)
29 PF10960 DUF2762: Protein of u 23.8 3.8E+02 0.0082 21.4 9.2 66 298-365 3-68 (71)
30 PF07341 DUF1473: Protein of u 23.4 4.2E+02 0.0091 24.2 7.4 54 54-109 37-90 (163)
31 PF01956 DUF106: Integral memb 23.3 1.4E+02 0.003 27.1 4.6 92 298-396 18-109 (168)
32 PF00094 VWD: von Willebrand f 23.1 33 0.00071 29.7 0.5 14 134-147 137-150 (159)
33 COG1344 FlgL Flagellin and rel 22.8 1.9E+02 0.0042 29.6 6.1 49 319-367 285-333 (360)
34 TIGR00316 cdhC CO dehydrogenas 22.5 41 0.0009 35.7 1.1 24 129-152 199-223 (458)
35 PRK08073 flgL flagellar hook-a 22.0 2.1E+02 0.0046 28.3 6.0 51 319-369 215-265 (287)
36 PRK08883 ribulose-phosphate 3- 21.6 3.2E+02 0.0068 26.2 6.9 47 128-174 131-178 (220)
37 PF15214 PXT1: Peroxisomal tes 20.5 1.3E+02 0.0029 22.3 3.1 39 351-398 12-51 (51)
38 PRK12803 flagellin; Provisiona 20.2 3.4E+02 0.0074 27.9 7.2 50 318-367 259-308 (335)
39 PF14335 DUF4391: Domain of un 20.1 4.7E+02 0.01 24.8 7.8 46 321-366 173-218 (221)
No 1
>COG0224 AtpG F0F1-type ATP synthase, gamma subunit [Energy production and conversion]
Probab=100.00 E-value=1.8e-84 Score=634.30 Aligned_cols=286 Identities=43% Similarity=0.642 Sum_probs=262.2
Q ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcccCCCCCCCccC-CCCceEEEEEE
Q 014925 54 RELKERLNTVKNTQKITEAMKLVAAARVRKAQEAVISSRPFVEKLVEFLYVINEQLQLDDIDVPLTNI-RPVKKVAIVII 132 (416)
Q Consensus 54 keIk~RI~SVknt~KITkAMkmVAaaKlrkaq~~l~~~rpY~~~l~~vl~~l~~~~~~~~~~~pl~~~-~~~k~~~lIVI 132 (416)
++||+||+||++|+|||+||||||+||+||+|+++.+.+||++++.+++.++... ..+.+||++.. +++|++++|||
T Consensus 1 keik~kI~Svk~t~KITkAM~mVaasKl~kaq~~~~a~~pY~e~i~~vl~~l~~~--~~~~~~p~~~~~~e~kr~~~Ivi 78 (287)
T COG0224 1 KEIRRKIKSVKNTQKITKAMEMVAASKLRKAQERAEAARPYAEKIRKVLGHLASA--NLELDHPLLKPTREVKRVLYIVI 78 (287)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhc--ccccCCcccccccCCCceEEEEE
Confidence 5899999999999999999999999999999999999999999999999999875 22357898776 78999999999
Q ss_pred eCCCCCCccccHHHHHHHHHHHHHHhhCCCcEEEEEEechhHHHHhhccccceeeeeecCCCCCHHHHHHHHHHHHhhhh
Q 014925 133 TGDRGLCGGFNKAVIKKAENRMVELKDMGLDCVVISVGKKGNAYFRHRSNVSVIRCIEGEGFYTVKEAQTIADNVFSLFV 212 (416)
Q Consensus 133 tSDrGLCG~fNs~Iik~~~~~i~~~~~~g~~~~li~VGkKg~~~~~~~~~~~v~~~~~~~~~p~~~~a~~I~~~li~~~~ 212 (416)
|||||||||||+||+|.+...++++.++|.++.+++||+||.+||++++..++..+.++++.|+++.+..|++.+++.|.
T Consensus 79 TSDrGLcG~~Nsni~k~~~~~i~~~~~~~~~~~li~iG~Kg~~~f~~~~~~i~~~~~~l~~~p~~~~~~~i~~~~~~~~~ 158 (287)
T COG0224 79 TSDRGLCGGFNSNIFKKVENLIKELKNKGKEVKLILIGKKGIDFFKKRGYNILESFTGLGDNPSFEEAIQIADKILDAFL 158 (287)
T ss_pred ecCcchhhhhhHHHHHHHHHHHHhhhccCCceEEEEEchHHHHHHHhcCcchhhHhhccccCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999899999999999999999887777777788888999999999999999999
Q ss_pred cCCccEEEEEeecccccccccceeeeeecCccCccccccCCcccchhhhhHhhhhcccccchhhccccccccCCCCCCcc
Q 014925 213 SEEVDKVELVYTKFVSLVKSDPVIHTLLPLSMKGVICNENGMCVDAVEDELFRLTTNEGKMIVERDSVTFNKGELSPLML 292 (416)
Q Consensus 213 ~~e~d~V~vvYnkf~s~~~q~p~~~~LLPl~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (416)
+|++|+|+|+||+|+|+++|+|++++|||+++.+. ..+. . ++. ..+|+
T Consensus 159 ~g~~d~v~l~yn~f~n~~sq~~~~~~llP~~~~~~-----------~~~~-----------------~--~~~--~~~~e 206 (287)
T COG0224 159 EGEIDELYLVYNKFKNALSQEPTVQQLLPLDKIED-----------EAEE-----------------E--EPG--LWDYE 206 (287)
T ss_pred CCCCceEEEEecccccceeeeeeeEEEecCCcccc-----------hhhh-----------------c--ccc--cccee
Confidence 99999999999999999999999999999986220 0000 0 000 14789
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHHHH
Q 014925 293 FEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 372 (416)
Q Consensus 293 fEp~~e~iL~~Llp~Yl~~~Ly~allES~aSE~aARm~AM~~AtdNA~eli~~Ltl~yNr~RQa~IT~EI~EIVsGAeAL 372 (416)
||||+++||+.|+|+|+.++||+|++||.||||+|||+||++|||||+|||++|++.|||+||++|||||+|||+||+||
T Consensus 207 fEpd~e~il~~Ll~~Y~~~~iy~alles~asE~aaRm~AM~~ATdNA~~lI~~l~l~yNk~RQa~ITqEL~EIV~Ga~AL 286 (287)
T COG0224 207 FEPDAEEILETLLPRYLESQLYGALLESKASEHAARMTAMKNATDNAGDLIKELTLVYNKARQAAITQELIEIVGGAEAL 286 (287)
T ss_pred eCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred h
Q 014925 373 T 373 (416)
Q Consensus 373 ~ 373 (416)
+
T Consensus 287 ~ 287 (287)
T COG0224 287 E 287 (287)
T ss_pred C
Confidence 4
No 2
>PRK13427 F0F1 ATP synthase subunit gamma; Provisional
Probab=100.00 E-value=2.6e-80 Score=611.03 Aligned_cols=288 Identities=35% Similarity=0.533 Sum_probs=257.0
Q ss_pred cccHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcccCCCCCCCccCCC-CceEE
Q 014925 50 RCGLRELKERLNTVKNTQKITEAMKLVAAARVRKAQEAVISSRPFVEKLVEFLYVINEQLQLDDIDVPLTNIRP-VKKVA 128 (416)
Q Consensus 50 ~a~LkeIk~RI~SVknt~KITkAMkmVAaaKlrkaq~~l~~~rpY~~~l~~vl~~l~~~~~~~~~~~pl~~~~~-~k~~~ 128 (416)
|++|++||+||+||++|+|||+||||||+||+||||+++.+.|||++++.+++.+++.... ..++|++..++ .++++
T Consensus 1 Ma~lkeik~RI~sv~st~kIT~AMkmVAasklrka~~~~~~~r~Y~~~i~~~~~~l~~~~~--~~~~p~~~~~~~~~~~~ 78 (289)
T PRK13427 1 MATPREIKKRINSVKNTRKITRTMEMVSTAKSKKATDRVNAAHPYANKIKELVSSLASLEG--VVHSPYLRRPEKIRTVA 78 (289)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhCcC--cccCCCcccCCccCceE
Confidence 5899999999999999999999999999999999999999999999999999999886421 22478765554 35688
Q ss_pred EEEEeCCCCCCccccHHHHHHHHHHHHHHhhCCCcEEEEEEechhHHHHhhccccceeeeeecCCCCCHHHHHHHHHHHH
Q 014925 129 IVIITGDRGLCGGFNKAVIKKAENRMVELKDMGLDCVVISVGKKGNAYFRHRSNVSVIRCIEGEGFYTVKEAQTIADNVF 208 (416)
Q Consensus 129 lIVItSDrGLCG~fNs~Iik~~~~~i~~~~~~g~~~~li~VGkKg~~~~~~~~~~~v~~~~~~~~~p~~~~a~~I~~~li 208 (416)
+||||||||||||||++|+|.+++.++++...|+++.+++||+||.++|++++......+.++++.|+++.+..|++.++
T Consensus 79 ~ivitSDrGLcG~fN~~v~k~~~~~i~~~~~~~~~~~~~~vG~kg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~ 158 (289)
T PRK13427 79 LLIITANRGLCGGFNSNLNRMAKARIAELKKKGVNVELHIVGKKGISFFKFAGEKAEKTYTHIDDKSGYKEAEELANLFM 158 (289)
T ss_pred EEEEeCCCCccccccHHHHHHHHHHHHHHHhCCCcEEEEEEeHHHHHHHHHcCCCceeeecccCCccCHHHHHHHHHHHH
Confidence 99999999999999999999999999887767778899999999999999877665666656777899999999999999
Q ss_pred hhhhcCCccEEEEEeecccccccccceeeeeecCccCccccccCCcccchhhhhHhhhhcccccchhhccccccccCCCC
Q 014925 209 SLFVSEEVDKVELVYTKFVSLVKSDPVIHTLLPLSMKGVICNENGMCVDAVEDELFRLTTNEGKMIVERDSVTFNKGELS 288 (416)
Q Consensus 209 ~~~~~~e~d~V~vvYnkf~s~~~q~p~~~~LLPl~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 288 (416)
+.|.+|++|+|+|+||+|+|.++|+|.+++|||+++... .+ .... .
T Consensus 159 ~~~~~~~~d~v~viy~~f~s~~~q~~~~~~llP~~~~~~-------------~~--------------------~~~~-~ 204 (289)
T PRK13427 159 ERFANESVDAVEIASTVYYSAASQKPETTRVLPLEPPTA-------------AA--------------------EGSV-Q 204 (289)
T ss_pred HHHHcCCCCEEEEEecccccceecceeeEEeeCCCcccc-------------cc--------------------cccC-C
Confidence 999999999999999999999999999999999963100 00 0000 1
Q ss_pred CCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 014925 289 PLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAG 368 (416)
Q Consensus 289 ~~~~fEp~~e~iL~~Llp~Yl~~~Ly~allES~aSE~aARm~AM~~AtdNA~eli~~Ltl~yNr~RQa~IT~EI~EIVsG 368 (416)
+.|.|||+++++|+.|+|.||++.||+|++||+||||+|||+||++|||||+||+++|+++|||+||++||+||+|||+|
T Consensus 205 ~~~~~ep~~~~vl~~l~~~yl~~~ly~alles~aSE~aaRm~AM~~At~Na~e~i~~L~l~yNr~RQ~~IT~EL~EIv~G 284 (289)
T PRK13427 205 DDVVYEPSPEAILESLLPLVVKTAFLKAILEANASEQIARRIAMKSATDAASEMIKLLTRGYNRVRQAKITQEISEIVGG 284 (289)
T ss_pred CceEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 24789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHh
Q 014925 369 AEALT 373 (416)
Q Consensus 369 AeAL~ 373 (416)
|+||+
T Consensus 285 aeal~ 289 (289)
T PRK13427 285 ADALN 289 (289)
T ss_pred HhhcC
Confidence 99984
No 3
>PRK14111 F0F1 ATP synthase subunit gamma; Provisional
Probab=100.00 E-value=4.9e-80 Score=609.39 Aligned_cols=288 Identities=33% Similarity=0.525 Sum_probs=257.5
Q ss_pred cccHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcccCCCCCCCccCCC-CceEE
Q 014925 50 RCGLRELKERLNTVKNTQKITEAMKLVAAARVRKAQEAVISSRPFVEKLVEFLYVINEQLQLDDIDVPLTNIRP-VKKVA 128 (416)
Q Consensus 50 ~a~LkeIk~RI~SVknt~KITkAMkmVAaaKlrkaq~~l~~~rpY~~~l~~vl~~l~~~~~~~~~~~pl~~~~~-~k~~~ 128 (416)
|++|++||+||+||++|+|||+||||||++|+||||+++.+.+||++++.+++.+++......+..+|++..++ .++++
T Consensus 1 Ma~lkeik~RI~Sv~s~~kITkAMkmvAasklrka~~~~~~~~~Y~~~i~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~ 80 (290)
T PRK14111 1 MPSTREIRRRIRSVKNTAQITRAMEMVSASKMRRAQRNVLATRPYADRIRDVMGDLTARTVGAARVGPLLEKRPTVKRVA 80 (290)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhcccCccccCcccccCccccceE
Confidence 58999999999999999999999999999999999999999999999999999998864321112367776665 57788
Q ss_pred EEEEeCCCCCCccccHHHHHHHHHHHHHHhhCCCcEEEEEEechhHHHHhhccccceeeeeecCCCCCHHHHHHHHHHHH
Q 014925 129 IVIITGDRGLCGGFNKAVIKKAENRMVELKDMGLDCVVISVGKKGNAYFRHRSNVSVIRCIEGEGFYTVKEAQTIADNVF 208 (416)
Q Consensus 129 lIVItSDrGLCG~fNs~Iik~~~~~i~~~~~~g~~~~li~VGkKg~~~~~~~~~~~v~~~~~~~~~p~~~~a~~I~~~li 208 (416)
+||||||||||||||++|+|.+.+.++++...|+++.+++||+||.+||+++|......+.+.++.|+++++..|++.++
T Consensus 81 ~IvitSDrGLCG~fN~~l~k~~~~~i~~~~~~~~~~~l~~vG~Kg~~~l~~~~~~i~~~~~~~~~~p~~~~~~~i~~~~~ 160 (290)
T PRK14111 81 LILVTPDRGLAGSLNANVLRRAIRFITDERSMGRTVDVIAIGRKGRDFMVRTGQALVAEFTRLGDAPKLEAILPVATSAI 160 (290)
T ss_pred EEEEeCCCCccccccHHHHHHHHHHHHHHHhCCCceEEEEEehHHHHHHHHcCCCceeeeecCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999887766777889999999999999887655555556677899999999999999
Q ss_pred hhhhcCCccEEEEEeecccccccccceeeeeecCccCccccccCCcccchhhhhHhhhhcccccchhhccccccccCCCC
Q 014925 209 SLFVSEEVDKVELVYTKFVSLVKSDPVIHTLLPLSMKGVICNENGMCVDAVEDELFRLTTNEGKMIVERDSVTFNKGELS 288 (416)
Q Consensus 209 ~~~~~~e~d~V~vvYnkf~s~~~q~p~~~~LLPl~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 288 (416)
+.|.+|++|+|+|+||+|+|.++|+|.+++|||+++.. ++ . . ..
T Consensus 161 ~~~~~~~~d~v~iiy~~f~s~~~~~~~~~~llP~~~~~--------------~~--------------------~-~-~~ 204 (290)
T PRK14111 161 NGFQSGKYDEVYVLYSEFINTLVQRPTIKQLLPIEPPE--------------IS--------------------T-T-TV 204 (290)
T ss_pred HHHHcCCCCEEEEEecccccceeeeeeEEEecCCCccc--------------cc--------------------c-c-cc
Confidence 99999999999999999999999999999999996411 00 0 0 01
Q ss_pred CCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 014925 289 PLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAG 368 (416)
Q Consensus 289 ~~~~fEp~~e~iL~~Llp~Yl~~~Ly~allES~aSE~aARm~AM~~AtdNA~eli~~Ltl~yNr~RQa~IT~EI~EIVsG 368 (416)
++|+|||+++++|+.|+|.||++.||+|++||++|||+|||+||++|||||+|++++|+++|||+||++||+||+|||+|
T Consensus 205 ~~~~~ep~~~~il~~L~~~yl~~~ly~al~es~aSE~aaRm~AM~~At~Na~e~i~~L~~~yNr~RQ~~IT~El~EIVsG 284 (290)
T PRK14111 205 VDYTYEPSPEEVLRALLPRFVEVQLYQAVLESIASEHSARMVAMRNATDNAKELVRDLTLTYNKARQAAITKEVSEIASG 284 (290)
T ss_pred cceeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 13789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHh
Q 014925 369 AEALT 373 (416)
Q Consensus 369 AeAL~ 373 (416)
|+||+
T Consensus 285 aeal~ 289 (290)
T PRK14111 285 AAALG 289 (290)
T ss_pred HHHhc
Confidence 99995
No 4
>PRK13423 F0F1 ATP synthase subunit gamma; Provisional
Probab=100.00 E-value=6.4e-79 Score=600.92 Aligned_cols=287 Identities=39% Similarity=0.560 Sum_probs=255.9
Q ss_pred cccHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcccCCCCCCCccCCCCceEEE
Q 014925 50 RCGLRELKERLNTVKNTQKITEAMKLVAAARVRKAQEAVISSRPFVEKLVEFLYVINEQLQLDDIDVPLTNIRPVKKVAI 129 (416)
Q Consensus 50 ~a~LkeIk~RI~SVknt~KITkAMkmVAaaKlrkaq~~l~~~rpY~~~l~~vl~~l~~~~~~~~~~~pl~~~~~~k~~~l 129 (416)
|++|++||+||+||++|+|||+||||||+||+||+|+++.+.|||++++.+++.+++...+. ..+|++..++.+++++
T Consensus 1 M~~l~~ik~RI~Sv~~t~kItkAMkmvAaaklrka~~~~~~~~~y~~~i~~~~~~l~~~~~~--~~~p~~~~~~~~~~~~ 78 (288)
T PRK13423 1 MASLKDIKKRIVSVKNTRQITKAMKMVSAAKLRRAQENVVAARPYAAKLGEVLGSLAARAGE--DAHPLLVPREVKKALL 78 (288)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhccCc--ccCcccccCCCceEEE
Confidence 58999999999999999999999999999999999999999999999999999999864321 2367765555677889
Q ss_pred EEEeCCCCCCccccHHHHHHHHHHHHHHhhCCCcEEEEEEechhHHHHhhccccceeeeeecCCCCCHHHHHHHHHHHHh
Q 014925 130 VIITGDRGLCGGFNKAVIKKAENRMVELKDMGLDCVVISVGKKGNAYFRHRSNVSVIRCIEGEGFYTVKEAQTIADNVFS 209 (416)
Q Consensus 130 IVItSDrGLCG~fNs~Iik~~~~~i~~~~~~g~~~~li~VGkKg~~~~~~~~~~~v~~~~~~~~~p~~~~a~~I~~~li~ 209 (416)
|||||||||||+||++|+|.+.+.++++..+|.++.+++||+||.++|++++......+.+..+.|+++.+..|++++++
T Consensus 79 IvitSDrGLCG~fN~~i~k~~~~~i~~~~~~~~~~~l~~vG~k~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~l~~ 158 (288)
T PRK13423 79 VVVTSDRGLCGGFNSNLCKAAERFLKENKDEFEEISLTTVGRKGREFLKNRGLIIRKNYGGVVANLTYETAALLAQELIE 158 (288)
T ss_pred EEEeCCCCCcchhhHHHHHHHHHHHHHHHhcCCceEEEEecHHHHHHHHHcCCCceeeecCcCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999998876667778899999999999998765444555556678899999999999999
Q ss_pred hhhcCCccEEEEEeecccccccccceeeeeecCccCccccccCCcccchhhhhHhhhhcccccchhhccccccccCCCCC
Q 014925 210 LFVSEEVDKVELVYTKFVSLVKSDPVIHTLLPLSMKGVICNENGMCVDAVEDELFRLTTNEGKMIVERDSVTFNKGELSP 289 (416)
Q Consensus 210 ~~~~~e~d~V~vvYnkf~s~~~q~p~~~~LLPl~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (416)
.|.++++|+|+|+||+|+|+++|+|.+++|||+++... . ... ..+
T Consensus 159 ~~~~~~~d~v~iiy~~f~n~~~q~~~~~~llP~~~~~~--------------~--------------------~~~-~~~ 203 (288)
T PRK13423 159 GYLAGEYDEVYLVYNEFKSVMSQDITVQQLLPIDPPEA--------------A--------------------DDE-YLP 203 (288)
T ss_pred HHhcCCCCEEEEEecccccccccceeEEEecCCCcccc--------------c--------------------ccc-ccc
Confidence 99999999999999999999999999999999964110 0 000 012
Q ss_pred CccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhH
Q 014925 290 LMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGA 369 (416)
Q Consensus 290 ~~~fEp~~e~iL~~Llp~Yl~~~Ly~allES~aSE~aARm~AM~~AtdNA~eli~~Ltl~yNr~RQa~IT~EI~EIVsGA 369 (416)
.|.|||+++++|++|+|.|+++.||+|++||+||||+|||+||++|||||+|++++|+++|||+||++||+||+|||+||
T Consensus 204 ~~~~ep~~~~vl~~l~~~yl~~~ly~al~es~aSE~aaRm~AM~~At~Na~e~i~~L~l~yNr~RQ~~IT~EL~EIvsGa 283 (288)
T PRK13423 204 EYIYEPSRDALLAELLPKHVEVQIYRALLESVASEHGARMTAMDSATKNATEMIGKLTLQYNRARQAAITTELMEIVSGA 283 (288)
T ss_pred ceeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHh
Q 014925 370 EALT 373 (416)
Q Consensus 370 eAL~ 373 (416)
+||+
T Consensus 284 eal~ 287 (288)
T PRK13423 284 EALK 287 (288)
T ss_pred HHhc
Confidence 9985
No 5
>PRK13425 F0F1 ATP synthase subunit gamma; Provisional
Probab=100.00 E-value=6.4e-79 Score=601.69 Aligned_cols=286 Identities=38% Similarity=0.558 Sum_probs=254.0
Q ss_pred cccHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcccCCCCCCCccCCC-CceEE
Q 014925 50 RCGLRELKERLNTVKNTQKITEAMKLVAAARVRKAQEAVISSRPFVEKLVEFLYVINEQLQLDDIDVPLTNIRP-VKKVA 128 (416)
Q Consensus 50 ~a~LkeIk~RI~SVknt~KITkAMkmVAaaKlrkaq~~l~~~rpY~~~l~~vl~~l~~~~~~~~~~~pl~~~~~-~k~~~ 128 (416)
|++|++||+||+||++|+|||+||||||++|+||+|+++.+.|||++++.+++.+++.... ...+|++..++ .++++
T Consensus 1 M~~l~~ik~RI~sv~~t~kIT~AMkmVA~aklrka~~~~~~~~~Y~~~i~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~ 78 (291)
T PRK13425 1 MPTLKDIRVRIKGVKSTQQVTKAMKMVAAAKLRRAQERAIMARPYAAKLKEMLGSLSAKVD--TSLNPLLSPRSEVNKVL 78 (291)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhccC--cccCccccccccCccEE
Confidence 5899999999999999999999999999999999999999999999999999999976432 12377765554 46788
Q ss_pred EEEEeCCCCCCccccHHHHHHHHHHHHHHhh---CCCcEEEEEEechhHHHHhhccccceeeeeecCCCCCHHHHHHHHH
Q 014925 129 IVIITGDRGLCGGFNKAVIKKAENRMVELKD---MGLDCVVISVGKKGNAYFRHRSNVSVIRCIEGEGFYTVKEAQTIAD 205 (416)
Q Consensus 129 lIVItSDrGLCG~fNs~Iik~~~~~i~~~~~---~g~~~~li~VGkKg~~~~~~~~~~~v~~~~~~~~~p~~~~a~~I~~ 205 (416)
+||||||||||||||++|+|.+.+.++++.. .+.++.+++||+||.++|+++|...+..+.+..+.|+++.+..|++
T Consensus 79 ~ivitSDrGLCG~fN~~v~k~~~~~~~~~~~~~~~~~~~~l~~iG~Kg~~~~~~~~~~i~~~~~~~~~~~~~~~a~~i~~ 158 (291)
T PRK13425 79 VILITSDRGLCGAFNTNIIKLAQKVIHEDYAALHAKGGVSMICAGTRGFDFFRKRGYNIVKGYPGVFQNLDFSVAKEIAE 158 (291)
T ss_pred EEEEeCCCcccccchHHHHHHHHHHHHHhhhhhccCCceEEEEeeHHHHHHHHHcCCCceeeecCcCCCCCHHHHHHHHH
Confidence 9999999999999999999999999876543 3557789999999999999877655556556677889999999999
Q ss_pred HHHhhhhcCCccEEEEEeecccccccccceeeeeecCccCccccccCCcccchhhhhHhhhhcccccchhhccccccccC
Q 014925 206 NVFSLFVSEEVDKVELVYTKFVSLVKSDPVIHTLLPLSMKGVICNENGMCVDAVEDELFRLTTNEGKMIVERDSVTFNKG 285 (416)
Q Consensus 206 ~li~~~~~~e~d~V~vvYnkf~s~~~q~p~~~~LLPl~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 285 (416)
.+++.|.+|++|+|+|+||+|+|.++|+|.+++|||+++... .+ ..
T Consensus 159 ~~~~~~~~~~~d~v~viy~~f~~~~~~~~~~~~llP~~~~~~-------------~~--------------------~~- 204 (291)
T PRK13425 159 TASGMYLRGEVDKVVVVYNEFKSVLAPNLKSEVLLPITPEKP-------------GA--------------------EG- 204 (291)
T ss_pred HHHHHHHcCCCCEEEEEeccceeceeeeEEEEEeeCCCcccc-------------cc--------------------cc-
Confidence 999999999999999999999999999999999999964110 00 00
Q ss_pred CCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 014925 286 ELSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEI 365 (416)
Q Consensus 286 ~~~~~~~fEp~~e~iL~~Llp~Yl~~~Ly~allES~aSE~aARm~AM~~AtdNA~eli~~Ltl~yNr~RQa~IT~EI~EI 365 (416)
..+|+|||+++++|++|+|.||++.||+|++||+||||+|||+||++|||||+|++++|+++|||+||++||+||+||
T Consensus 205 --~~~~~~eP~~~~il~~L~~~yl~~~ly~al~es~aSE~aaRm~AM~~At~Na~e~i~~L~~~yNr~RQ~~IT~Ei~EI 282 (291)
T PRK13425 205 --GSDYIYEPSPAAIIDELVPKHLNTQVWRMMLESNAAEQAARMTAMDSATENAKELLRTLNISYNRARQAAITKELSEI 282 (291)
T ss_pred --CCCeEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 013789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhHHHHh
Q 014925 366 VAGAEALT 373 (416)
Q Consensus 366 VsGAeAL~ 373 (416)
|+||+||+
T Consensus 283 v~Ga~al~ 290 (291)
T PRK13425 283 VAGADALQ 290 (291)
T ss_pred HHHHHHhc
Confidence 99999985
No 6
>PRK13426 F0F1 ATP synthase subunit gamma; Provisional
Probab=100.00 E-value=5.1e-79 Score=602.41 Aligned_cols=289 Identities=36% Similarity=0.499 Sum_probs=254.9
Q ss_pred cccHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcccCCCCCCCccCCCCceEEE
Q 014925 50 RCGLRELKERLNTVKNTQKITEAMKLVAAARVRKAQEAVISSRPFVEKLVEFLYVINEQLQLDDIDVPLTNIRPVKKVAI 129 (416)
Q Consensus 50 ~a~LkeIk~RI~SVknt~KITkAMkmVAaaKlrkaq~~l~~~rpY~~~l~~vl~~l~~~~~~~~~~~pl~~~~~~k~~~l 129 (416)
|++|++||+||+||++|+|||+||||||++|+||+|+++.+.+||++++.+++.+++...+ ..++|++..++.+++++
T Consensus 1 Ma~l~~ik~RI~sv~~t~kIt~AMkmVAasklrka~~~~~~~~~Y~~~l~~~l~~l~~~~~--~~~~~~~~~~~~~~~~~ 78 (291)
T PRK13426 1 MASLKEIKTRIASVQSTRKITSAMKMVASAKLHKAQGAIENMLPYQRKLNHILTNFLSADL--DVESPFTVERPVKRVAI 78 (291)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccC--CCCCcccccCCcceEEE
Confidence 5899999999999999999999999999999999999999999999999999999886432 22478766665677889
Q ss_pred EEEeCCCCCCccccHHHHHHHHHHHHHHhhCC-CcEEEEEEechhHHHHhhccccceeeeeecCCCCCHHHHHHHHHHHH
Q 014925 130 VIITGDRGLCGGFNKAVIKKAENRMVELKDMG-LDCVVISVGKKGNAYFRHRSNVSVIRCIEGEGFYTVKEAQTIADNVF 208 (416)
Q Consensus 130 IVItSDrGLCG~fNs~Iik~~~~~i~~~~~~g-~~~~li~VGkKg~~~~~~~~~~~v~~~~~~~~~p~~~~a~~I~~~li 208 (416)
||||||||||||||++|+|.++++++++...| .++.+++||+||.++|+++|..++..+....+.|+++++..|++.++
T Consensus 79 IvitSDrGLcG~fN~~v~~~~~~~~~~~~~~~~~~~~~~~vG~k~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~l~ 158 (291)
T PRK13426 79 VVFSSNTSLCGGFNANIIKLLLQTIGEYRTLGQDNILIYPVGKKIEEAVKKLGFKVQGDYQTLADKPSYEEAAALAMRLM 158 (291)
T ss_pred EEEeCCCcccchhhHHHHHHHHHHHHHHhhcCCCceEEEEeeHHHHHHHHHcCCCceEeecccCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999998765444 57789999999999999887655555556667899999999999999
Q ss_pred hhhhcCCccEEEEEeecccccccccceeeeeecCccCccccccCCcccchhhhhHhhhhcccccchhhccccccccCCCC
Q 014925 209 SLFVSEEVDKVELVYTKFVSLVKSDPVIHTLLPLSMKGVICNENGMCVDAVEDELFRLTTNEGKMIVERDSVTFNKGELS 288 (416)
Q Consensus 209 ~~~~~~e~d~V~vvYnkf~s~~~q~p~~~~LLPl~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 288 (416)
+.|.+|++|+|+|+||+|+|.++|.|.+++|||+++... +. + +......
T Consensus 159 ~~~~~~~~d~v~iiy~~f~s~~~q~~~~~~llPi~~~~~---------~~--~--------------------~~~~~~~ 207 (291)
T PRK13426 159 ELFLEGEIDKVELIYHHFKSMGVQVLTRETYLPIDLSQE---------KN--A--------------------EHAGGVA 207 (291)
T ss_pred HHHhcCCCCEEEEEecccccccccceeEEEecCCCcccc---------cc--c--------------------ccccCCC
Confidence 999999999999999999999999999999999964110 00 0 0000111
Q ss_pred CCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 014925 289 PLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAG 368 (416)
Q Consensus 289 ~~~~fEp~~e~iL~~Llp~Yl~~~Ly~allES~aSE~aARm~AM~~AtdNA~eli~~Ltl~yNr~RQa~IT~EI~EIVsG 368 (416)
+.|.|||+++++|+.|+|.||++.||+|++||+||||+|||+||++|||||+||+++|+++|||+||++||+||+|||+|
T Consensus 208 ~~~~~Ep~~e~il~~L~~~yl~~~ly~alles~aSE~aaRm~AM~~At~Na~e~i~~L~~~yNr~RQ~~IT~El~EIvsG 287 (291)
T PRK13426 208 NDYIIEPSADTVLNDLIPKLLSLKIYTALLDSNASEHAARMVAMQIATDNANELLQELTLQYNKSRQQAITNELLDIVGG 287 (291)
T ss_pred CceEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 24789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHH
Q 014925 369 AEA 371 (416)
Q Consensus 369 AeA 371 (416)
|+|
T Consensus 288 aea 290 (291)
T PRK13426 288 SMA 290 (291)
T ss_pred hhc
Confidence 997
No 7
>PRK13424 F0F1 ATP synthase subunit gamma; Provisional
Probab=100.00 E-value=1.2e-78 Score=599.84 Aligned_cols=289 Identities=34% Similarity=0.523 Sum_probs=256.6
Q ss_pred cccHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcccCCCCCCCccCCC-CceEE
Q 014925 50 RCGLRELKERLNTVKNTQKITEAMKLVAAARVRKAQEAVISSRPFVEKLVEFLYVINEQLQLDDIDVPLTNIRP-VKKVA 128 (416)
Q Consensus 50 ~a~LkeIk~RI~SVknt~KITkAMkmVAaaKlrkaq~~l~~~rpY~~~l~~vl~~l~~~~~~~~~~~pl~~~~~-~k~~~ 128 (416)
|+++++||+||+||++|+|||+||||||++|+||+|+++.+.+||++++.+++.+++.... ...+|++..++ .++++
T Consensus 1 M~~l~eik~RI~sv~~~~kIt~AMkmVAasklrka~~~~~~~~~Y~~~i~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~ 78 (291)
T PRK13424 1 MPSLKDVKVKIAGVKKTKQITKAMNMVASAKLRGAQQRIERFRPYAEKFYDMLGDLASRAD--SSAHPLLEVREEIKTCG 78 (291)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhccC--cccCcccccccccCcEE
Confidence 5899999999999999999999999999999999999999999999999999999886432 12367766554 36678
Q ss_pred EEEEeCCCCCCccccHHHHHHHHHHHHHHhhCCCcEEEEEEechhHHHHhhccccceeeeeecCCCCCHHHHHHHHHHHH
Q 014925 129 IVIITGDRGLCGGFNKAVIKKAENRMVELKDMGLDCVVISVGKKGNAYFRHRSNVSVIRCIEGEGFYTVKEAQTIADNVF 208 (416)
Q Consensus 129 lIVItSDrGLCG~fNs~Iik~~~~~i~~~~~~g~~~~li~VGkKg~~~~~~~~~~~v~~~~~~~~~p~~~~a~~I~~~li 208 (416)
+||||||||||||||++|+|.++++++++...|+++.+++||+||.++|+++|......+.+..+.|+++.+..|+++++
T Consensus 79 ~IvitSDrGLCG~fN~~v~k~~~~~i~~~~~~~~~~~l~~vG~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 158 (291)
T PRK13424 79 IVLITSDRGLCGSFNANLINAALKLAKQKTAEGKTVKFYCVGKKGRDAIRKTDFEIVTAYADQMTSFDFQLANSIGLEVI 158 (291)
T ss_pred EEEEeCCCcccccchHHHHHHHHHHHHHHhhCCCceEEEEeeHHHHHHHHHcCCCeeEeeccCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999887666778889999999999999877655555556677899999999999999
Q ss_pred hhhhcCCccEEEEEeecccccccccceeeeeecCccCccccccCCcccchhhhhHhhhhcccccchhhccccccccCCCC
Q 014925 209 SLFVSEEVDKVELVYTKFVSLVKSDPVIHTLLPLSMKGVICNENGMCVDAVEDELFRLTTNEGKMIVERDSVTFNKGELS 288 (416)
Q Consensus 209 ~~~~~~e~d~V~vvYnkf~s~~~q~p~~~~LLPl~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 288 (416)
+.|.+|++|+|+|+||+|+|+++|.|.+++|||+++.+. . . ..++. .
T Consensus 159 ~~~~~~~~d~v~viy~~f~s~~~~~~~~~~llP~~~~~~-----------~-~------------------~~~~~---~ 205 (291)
T PRK13424 159 DGYLTGELDEVVLVYGEFVSMARQLPITLQILPIAPEEA-----------E-E------------------EEAGA---S 205 (291)
T ss_pred HHHHcCCCCEEEEEeccccccccCceEEEEecCCCcccc-----------c-c------------------ccccc---c
Confidence 999999999999999999999999999999999964110 0 0 00000 1
Q ss_pred CCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 014925 289 PLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAG 368 (416)
Q Consensus 289 ~~~~fEp~~e~iL~~Llp~Yl~~~Ly~allES~aSE~aARm~AM~~AtdNA~eli~~Ltl~yNr~RQa~IT~EI~EIVsG 368 (416)
+.|+|||+++++|++|+|.||++.||+|++||++|||+|||+||++|||||+|++++|+++|||+||++||+||+|||+|
T Consensus 206 ~~~~~ep~~~~il~~L~~~yl~~~ly~al~es~asE~aaR~~AM~~At~Na~e~i~~L~~~yNr~RQ~~IT~Ei~EIvsG 285 (291)
T PRK13424 206 SEYIYEPSVEGLLAELLPRFIKVQIYRGLLDTSASEHAARMTAMDNATRNCDDMIGSLTLLYNKTRQASITRELMDIVGG 285 (291)
T ss_pred cCeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 13789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHh
Q 014925 369 AEALT 373 (416)
Q Consensus 369 AeAL~ 373 (416)
|+||+
T Consensus 286 a~al~ 290 (291)
T PRK13424 286 AEALK 290 (291)
T ss_pred HHHhc
Confidence 99985
No 8
>PRK13422 F0F1 ATP synthase subunit gamma; Provisional
Probab=100.00 E-value=2e-78 Score=599.99 Aligned_cols=295 Identities=31% Similarity=0.432 Sum_probs=251.5
Q ss_pred cccHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcccCCCCCCCccCCCCceEEE
Q 014925 50 RCGLRELKERLNTVKNTQKITEAMKLVAAARVRKAQEAVISSRPFVEKLVEFLYVINEQLQLDDIDVPLTNIRPVKKVAI 129 (416)
Q Consensus 50 ~a~LkeIk~RI~SVknt~KITkAMkmVAaaKlrkaq~~l~~~rpY~~~l~~vl~~l~~~~~~~~~~~pl~~~~~~k~~~l 129 (416)
|+++++||+||+||++|+|||+||||||+||+||||+++.+.|||++.+.+++..+... . .+..+|++..++.+++++
T Consensus 1 Ma~l~eik~RI~Sv~~t~kIT~AMkmVAasKlrka~~~~~~~~~y~~~~~~~~~~l~~~-~-~~~~~~~~~~~~~~~~~~ 78 (298)
T PRK13422 1 MSNAREIRSKVQSVKNTQKITGAMELVAASKMRGAIVKMNNVRPYVESANTIIKNVTAA-S-IDYPNPYLFDRDVKRVGY 78 (298)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhc-C-CccCCcccccCCCceEEE
Confidence 58999999999999999999999999999999999999999999999999999998753 1 122367766666677889
Q ss_pred EEEeCCCCCCccccHHHHHHHHHHHHHHhhCCCcEEEEEEechhHHHHhh-ccccceee--eeecCCCCCHHHHHHHHHH
Q 014925 130 VIITGDRGLCGGFNKAVIKKAENRMVELKDMGLDCVVISVGKKGNAYFRH-RSNVSVIR--CIEGEGFYTVKEAQTIADN 206 (416)
Q Consensus 130 IVItSDrGLCG~fNs~Iik~~~~~i~~~~~~g~~~~li~VGkKg~~~~~~-~~~~~v~~--~~~~~~~p~~~~a~~I~~~ 206 (416)
||||||||||||||++|+|.+.+.++++...|.++.+++||+||.++|++ ++...+.. +...++.|+++++..|++.
T Consensus 79 IvitSDrGLCG~fN~~v~k~~~~~~~~~~~~~~~~~l~~iG~K~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~ 158 (298)
T PRK13422 79 IVTSTDRGLCGGLNINLFKHVLKEIKNNIEDRVGVDVCVIGSKAENFFAKLKDVNIVATAHYNDKDKEGSIRAIGGAVKV 158 (298)
T ss_pred EEEeCCcccccchhHHHHHHHHHHHHHHHhCCCceEEEEEChhHHHHHHHhcCCCceeeeeeccCCCCCCHHHHHHHHHH
Confidence 99999999999999999999999998877667788899999999999985 44333433 2223367899999999999
Q ss_pred HHhhhhcCCccEEEEEeecccccccccceeeeeecCccCccccccCCcccchhhhhHhhhhcccccchhhccccccccCC
Q 014925 207 VFSLFVSEEVDKVELVYTKFVSLVKSDPVIHTLLPLSMKGVICNENGMCVDAVEDELFRLTTNEGKMIVERDSVTFNKGE 286 (416)
Q Consensus 207 li~~~~~~e~d~V~vvYnkf~s~~~q~p~~~~LLPl~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 286 (416)
+++.|.++++|+|+|+||+|+|.++|+|.+++|||+++.. +..+.+ +.. +....
T Consensus 159 ~~~~~~~~~~d~v~iiy~~f~s~~~q~~~~~~llP~~~~~----------~~~~~~------------~~~----~~~~~ 212 (298)
T PRK13422 159 MLDKFTAGEIDRLYMSSNQFVSTIKQRPRLQTLLPIQDIF----------SAEEIK------------ANK----EKATK 212 (298)
T ss_pred HHHHHHcCCCCEEEEEeccccCCcccceEEEEeeCCCccc----------chhhhc------------ccc----ccccc
Confidence 9999999999999999999999999999999999995310 000000 000 00000
Q ss_pred CCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 014925 287 LSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIV 366 (416)
Q Consensus 287 ~~~~~~fEp~~e~iL~~Llp~Yl~~~Ly~allES~aSE~aARm~AM~~AtdNA~eli~~Ltl~yNr~RQa~IT~EI~EIV 366 (416)
....|.|||+++++|++|+|.||++.||+|++||+||||+|||+||++|||||+||+++|+++|||+||++||+||+|||
T Consensus 213 ~~~~~~~ep~~~~il~~L~~~yl~~~ly~al~eS~aSE~aaRm~AM~~At~Na~eli~~L~l~yNr~RQa~IT~Ei~EIv 292 (298)
T PRK13422 213 GHWDYIYERDIEEVLNALCIRYIEAQVRGAILENAACEQAARMMAMKNATDNASDIIDQLKLDYNKVRQAMITQELAEIC 292 (298)
T ss_pred CCCCeEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01137899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHH
Q 014925 367 AGAEAL 372 (416)
Q Consensus 367 sGAeAL 372 (416)
+||+|.
T Consensus 293 sGaeA~ 298 (298)
T PRK13422 293 SGAAAV 298 (298)
T ss_pred hhhhcC
Confidence 999984
No 9
>PF00231 ATP-synt: ATP synthase This Pfam entry corresponds to chain g; InterPro: IPR000131 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. The ATPase F1 complex gamma subunit forms the central shaft that connects the F0 rotary motor to the F1 catalytic core. The gamma subunit functions as a rotary motor inside the cylinder formed by the alpha(3)beta(3) subunits in the F1 complex []. The best-conserved region of the gamma subunit is its C terminus, which seems to be essential for assembly and catalysis. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015986 ATP synthesis coupled proton transport, 0045261 proton-transporting ATP synthase complex, catalytic core F(1); PDB: 3OFN_G 3FKS_P 3OEE_Y 2HLD_Y 3OEH_Y 2XOK_G 3ZRY_G 3OE7_P 2WPD_G 3OAA_e ....
Probab=100.00 E-value=1.1e-78 Score=599.48 Aligned_cols=289 Identities=44% Similarity=0.652 Sum_probs=248.3
Q ss_pred ccHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcccCCCCCCCccCC-CCceEEE
Q 014925 51 CGLRELKERLNTVKNTQKITEAMKLVAAARVRKAQEAVISSRPFVEKLVEFLYVINEQLQLDDIDVPLTNIR-PVKKVAI 129 (416)
Q Consensus 51 a~LkeIk~RI~SVknt~KITkAMkmVAaaKlrkaq~~l~~~rpY~~~l~~vl~~l~~~~~~~~~~~pl~~~~-~~k~~~l 129 (416)
|+|++||+||+||++|+|||+||||||++|+||+++++.+.+||++++.+++.+++.... +.++|++..+ +.++++|
T Consensus 1 A~lk~ik~RI~sv~~i~kIt~aMkmvA~sklrk~~~~~~~~~~y~~~i~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~ 78 (290)
T PF00231_consen 1 ASLKEIKRRIKSVKSIQKITKAMKMVAASKLRKAQKALEAARPYAETIEEILADLLSSIS--DYQHPLLKKREEVKKVLL 78 (290)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHT--TT--SSGS-----SCEEE
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc--cccCcccccccccceEEE
Confidence 689999999999999999999999999999999999999999999999999999987642 3568888877 7889999
Q ss_pred EEEeCCCCCCccccHHHHHHHHHHHHHHhhCCCcEEEEEEechhHHHHhhccccceeeeeecCCCCCHHHHHHHHHHHHh
Q 014925 130 VIITGDRGLCGGFNKAVIKKAENRMVELKDMGLDCVVISVGKKGNAYFRHRSNVSVIRCIEGEGFYTVKEAQTIADNVFS 209 (416)
Q Consensus 130 IVItSDrGLCG~fNs~Iik~~~~~i~~~~~~g~~~~li~VGkKg~~~~~~~~~~~v~~~~~~~~~p~~~~a~~I~~~li~ 209 (416)
||||||||||||||++|+|++.+++++...+|+++.+++||+||.++|+++|..+...+.+.++.|+++.+..|++.+++
T Consensus 79 ivitSDrGLCG~fN~~v~k~~~~~~~~~~~~g~~~~l~~iG~K~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~l~~ 158 (290)
T PF00231_consen 79 IVITSDRGLCGGFNSNVIKAAESFIKEKDDQGKEVKLIVIGKKGRDFLKKRGYNIIASFNGISSDPTFEEASEIAEKLID 158 (290)
T ss_dssp EEE--STSSSTTHHHHHHHHHHHHHCCSCTTTSEEEEEEESHHHHHHHHCSSTTEEEEEESBTSS--HHHHHHHHHHHHH
T ss_pred EEEecCccccccccHHHHHHHHHHHhhccccCCceEEEEeCcchhhhhhhCCCcceeeeecccchhhHHHHHHHHHHHHh
Confidence 99999999999999999999999998887778889999999999999999876655566667789999999999999999
Q ss_pred hhhcCCccEEEEEeecccccccccceeeeeecCccCccccccCCcccchhhhhHhhhhcccccchhhccccccccCCCCC
Q 014925 210 LFVSEEVDKVELVYTKFVSLVKSDPVIHTLLPLSMKGVICNENGMCVDAVEDELFRLTTNEGKMIVERDSVTFNKGELSP 289 (416)
Q Consensus 210 ~~~~~e~d~V~vvYnkf~s~~~q~p~~~~LLPl~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (416)
.|.+|++|+|+|+||+|+|.++|+|..++|||+.... +..... +.....
T Consensus 159 ~~~~~~~d~v~viy~~~~~~~~~~~~~~~llP~~~~~----------~~~~~~---------------------~~~~~~ 207 (290)
T PF00231_consen 159 LYESGEIDEVYVIYNKFKSAVSQEPVVEQLLPLEKDI----------EQSSEE---------------------KWPKKS 207 (290)
T ss_dssp HCCCCS-SEEEEEEEEECSTTEEEEEEEEESSS---------------HHHHH---------------------TTTTGG
T ss_pred hhhcCCCCeEEEEEEEeccceeeeEEeeehhhhhccc----------hhhccc---------------------cccCCC
Confidence 9999999999999999999999999999999984310 000000 001123
Q ss_pred CccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhH
Q 014925 290 LMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGA 369 (416)
Q Consensus 290 ~~~fEp~~e~iL~~Llp~Yl~~~Ly~allES~aSE~aARm~AM~~AtdNA~eli~~Ltl~yNr~RQa~IT~EI~EIVsGA 369 (416)
.|.|||+++++|+.|+|.||++.||+|++||++|||+|||+||++|||||+|++++|+++|||+||++||+||+||||||
T Consensus 208 ~~~~ep~~~~il~~L~~~yl~~~l~~al~eS~asE~~aR~~AM~~At~Na~e~i~~L~~~yNr~RQa~IT~Ei~EIvsGa 287 (290)
T PF00231_consen 208 PYEFEPSPEEILDDLLPQYLFAQLYGALLESKASENAARMIAMENATDNAEELIDKLTLEYNRARQAEITQEIIEIVSGA 287 (290)
T ss_dssp GCCCSSTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHH
Q 014925 370 EAL 372 (416)
Q Consensus 370 eAL 372 (416)
+||
T Consensus 288 eAl 290 (290)
T PF00231_consen 288 EAL 290 (290)
T ss_dssp HT-
T ss_pred hcC
Confidence 997
No 10
>PRK14110 F0F1 ATP synthase subunit gamma; Provisional
Probab=100.00 E-value=1.1e-77 Score=593.03 Aligned_cols=286 Identities=36% Similarity=0.538 Sum_probs=252.1
Q ss_pred cHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcccCCCCCCCccCCCCceEEEEE
Q 014925 52 GLRELKERLNTVKNTQKITEAMKLVAAARVRKAQEAVISSRPFVEKLVEFLYVINEQLQLDDIDVPLTNIRPVKKVAIVI 131 (416)
Q Consensus 52 ~LkeIk~RI~SVknt~KITkAMkmVAaaKlrkaq~~l~~~rpY~~~l~~vl~~l~~~~~~~~~~~pl~~~~~~k~~~lIV 131 (416)
++++||+||+||++|+|||+||||||+||+||+|+++.+.|||++++.+++.+++.... ...+|++..++.+++++||
T Consensus 5 slkeik~RI~sv~~~~kIT~AMkmVAasklrkaq~~~~~~~~y~~~i~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~Iv 82 (291)
T PRK14110 5 SPRDIKRKIQGIKNTRRITNAMKVVSAAKLRKAQELLYASRPYSEKLYELISDLAAHID--RESHPLLERREEKNVDLVI 82 (291)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhccC--CccCcccccCccceEEEEE
Confidence 68999999999999999999999999999999999999999999999999999986532 1236776666567788999
Q ss_pred EeCCCCCCccccHHHHHHHHHHHHHHhhCCCcEEEEEEechhHHHHhhccccceeeeeecCC-CCCHHHHHHHHHHHHhh
Q 014925 132 ITGDRGLCGGFNKAVIKKAENRMVELKDMGLDCVVISVGKKGNAYFRHRSNVSVIRCIEGEG-FYTVKEAQTIADNVFSL 210 (416)
Q Consensus 132 ItSDrGLCG~fNs~Iik~~~~~i~~~~~~g~~~~li~VGkKg~~~~~~~~~~~v~~~~~~~~-~p~~~~a~~I~~~li~~ 210 (416)
||||||||||||++|+|.++++++++...|.++.+++||+||.++|++++......+.+..+ +|+++.+..|++.+++.
T Consensus 83 itSDrGLCG~fNs~vik~~~~~~~~~~~~~~~~~l~~iG~Kg~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~~l~~~ 162 (291)
T PRK14110 83 ITADRGLAGAFNSNVIKTAERLIQEKQSEGVRVNLILIGRKGVQYFSKRGYNIIKSYEDVFRKEINFSVVKEVGGILASR 162 (291)
T ss_pred EeCCCCccccccHHHHHHHHHHHHHHHhCCCceEEEEehHHHHHHHHHcCCCceeeeccccCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999877656778889999999999999876544444444544 45999999999999999
Q ss_pred hhcCCccEEEEEeecccccccccceeeeeecCccCccccccCCcccchhhhhHhhhhcccccchhhccccccccCCCCCC
Q 014925 211 FVSEEVDKVELVYTKFVSLVKSDPVIHTLLPLSMKGVICNENGMCVDAVEDELFRLTTNEGKMIVERDSVTFNKGELSPL 290 (416)
Q Consensus 211 ~~~~e~d~V~vvYnkf~s~~~q~p~~~~LLPl~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (416)
|.+|++|+|+|+||+|+|.++|+|.+++|||+++.. .+ + .++. ...
T Consensus 163 ~~~~~~d~v~iiy~~f~s~~~~~~~~~~llP~~~~~--------------~~------~-----------~~~~---~~~ 208 (291)
T PRK14110 163 YIEEETDAVYLINNEMITRATYKPKVRKFLPFEVEA--------------QE------K-----------KLDE---LSV 208 (291)
T ss_pred HHcCCCCEEEEEecccccceeeeEEEEEecCCCccc--------------cc------c-----------ccCC---CCC
Confidence 999999999999999999999999999999996410 00 0 0000 013
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHH
Q 014925 291 MLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAE 370 (416)
Q Consensus 291 ~~fEp~~e~iL~~Llp~Yl~~~Ly~allES~aSE~aARm~AM~~AtdNA~eli~~Ltl~yNr~RQa~IT~EI~EIVsGAe 370 (416)
|+|||+++++|++|+|.||++.||+|++||+||||+|||+||++|||||+||+++|+++|||+||++||+||+|||+||+
T Consensus 209 ~~~ep~~~~vl~~L~~~yl~~~ly~al~es~aSE~aaRm~AM~~At~Na~e~i~~L~l~yNr~RQ~~IT~Ei~EIv~Gae 288 (291)
T PRK14110 209 YNIEVSEEEFLDKLLQLYLNYQLYRALVESNAAEHFARMVAMDNATRNAGELIRKWTLIFNKARQEAITTELIDIVNAAE 288 (291)
T ss_pred eEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHh
Q 014925 371 ALT 373 (416)
Q Consensus 371 AL~ 373 (416)
||+
T Consensus 289 al~ 291 (291)
T PRK14110 289 AMK 291 (291)
T ss_pred hcC
Confidence 983
No 11
>TIGR01146 ATPsyn_F1gamma ATP synthase, F1 gamma subunit. This model describes the ATP synthase gamma subunit in bacteria and its equivalents in organelles, namely, mitochondria and chloroplast. F1/F0-ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and organelles of higher eukaryotes, namely, mitochondria and chloroplast. This enzyme is principally involed in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. The gamma subunit is the part of F1 cluster. Surrounding the gamma subunit in a cylinder-like structure are three alpha and three subunits in an alternating fashion. This is the central catalytic unit whose different conformations permit the binding of ADP and inorganic phosphate and release of ATP.
Probab=100.00 E-value=5.2e-77 Score=587.01 Aligned_cols=287 Identities=47% Similarity=0.718 Sum_probs=253.9
Q ss_pred cccHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcccCCCCCCCccCCCCceEEE
Q 014925 50 RCGLRELKERLNTVKNTQKITEAMKLVAAARVRKAQEAVISSRPFVEKLVEFLYVINEQLQLDDIDVPLTNIRPVKKVAI 129 (416)
Q Consensus 50 ~a~LkeIk~RI~SVknt~KITkAMkmVAaaKlrkaq~~l~~~rpY~~~l~~vl~~l~~~~~~~~~~~pl~~~~~~k~~~l 129 (416)
|++|++||+||+||++|+|||+||||||++|+||+|+++.+.+||++++.+++.+++.... +.++|++..++.+++++
T Consensus 1 M~~l~eik~RI~sv~~~~kIt~aMkmvA~sklrka~~~~~~~~~Y~~~i~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~ 78 (287)
T TIGR01146 1 MATLKEIRTRIKSVKNTQKITKAMKMVAASKLRRAQERAEAARPYAEKIRAVLGNLATKLL--NYDHPLLKSREVKKVGI 78 (287)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhccC--CCCCccccccccCeEEE
Confidence 5899999999999999999999999999999999999999999999999999999886532 12467665555577889
Q ss_pred EEEeCCCCCCccccHHHHHHHHHHHHHHhhCCCcEEEEEEechhHHHHhhccccceeeeeecCCCCCHHHHHHHHHHHHh
Q 014925 130 VIITGDRGLCGGFNKAVIKKAENRMVELKDMGLDCVVISVGKKGNAYFRHRSNVSVIRCIEGEGFYTVKEAQTIADNVFS 209 (416)
Q Consensus 130 IVItSDrGLCG~fNs~Iik~~~~~i~~~~~~g~~~~li~VGkKg~~~~~~~~~~~v~~~~~~~~~p~~~~a~~I~~~li~ 209 (416)
|||||||||||+||++|+|.+.+.++++...+.++.+++||+||.++|+++|..++..+...++.|+++.+..|++.+++
T Consensus 79 ivitSDrGLCG~fN~~v~k~~~~~~~~~~~~~~~~~l~~vG~k~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~i~~ 158 (287)
T TIGR01146 79 LVITSDRGLCGGYNSNVLKRVRQRAKELKAAGKEVKLVVIGRKGKSFFKRRGDNIVLSITGLSDQPTFEEASGIADKLLD 158 (287)
T ss_pred EEEeCCCCccccccHHHHHHHHHHHHHHhccCCceEEEEeeHHHHHHHHHcCCCeeEeecccCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999998776556678899999999999997765555555455678899999999999999
Q ss_pred hhhcCCccEEEEEeecccccccccceeeeeecCccCccccccCCcccchhhhhHhhhhcccccchhhccccccccCCCCC
Q 014925 210 LFVSEEVDKVELVYTKFVSLVKSDPVIHTLLPLSMKGVICNENGMCVDAVEDELFRLTTNEGKMIVERDSVTFNKGELSP 289 (416)
Q Consensus 210 ~~~~~e~d~V~vvYnkf~s~~~q~p~~~~LLPl~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (416)
.|.++++|+|+|+||+|+|+++|+|.+++|||++.... ++ .+ . .++
T Consensus 159 ~~~~~~~d~v~viy~~f~~~~~~~~~~~~llP~~~~~~-------------~~------------------~~--~-~~~ 204 (287)
T TIGR01146 159 AFASGEFDEVYIVYNKFVSSISQEPTVKQLLPLSEQGP-------------DE------------------GF--K-FGQ 204 (287)
T ss_pred HHHcCCCCEEEEEecccccceeeeEEEEEeeCCCcccc-------------cc------------------cc--c-CCC
Confidence 99999999999999999999999999999999964110 00 00 0 011
Q ss_pred CccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhH
Q 014925 290 LMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGA 369 (416)
Q Consensus 290 ~~~fEp~~e~iL~~Llp~Yl~~~Ly~allES~aSE~aARm~AM~~AtdNA~eli~~Ltl~yNr~RQa~IT~EI~EIVsGA 369 (416)
.|.|||+++++|++|+|.||++.||+|++||++|||+|||+||++|||||+|++++|+++|||+||++||+||+|||+||
T Consensus 205 ~~~~ep~~~~vl~~l~~~yl~~~ly~a~~es~asE~aaR~~AM~~At~Na~e~i~~L~~~yNr~RQ~~IT~El~EIvsGa 284 (287)
T TIGR01146 205 DYIFEPDEEEILDDLLPRYLESQIYGALLESAASEQAARMTAMDNATDNAGDLIKKLTLSYNRARQAAITQELIEIVAGA 284 (287)
T ss_pred CeEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHH
Q 014925 370 EAL 372 (416)
Q Consensus 370 eAL 372 (416)
+|+
T Consensus 285 eal 287 (287)
T TIGR01146 285 SAL 287 (287)
T ss_pred hcC
Confidence 986
No 12
>PRK05621 F0F1 ATP synthase subunit gamma; Validated
Probab=100.00 E-value=1.2e-76 Score=583.52 Aligned_cols=284 Identities=43% Similarity=0.628 Sum_probs=256.2
Q ss_pred cccHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcccCCCCCCCccCCCCceEEE
Q 014925 50 RCGLRELKERLNTVKNTQKITEAMKLVAAARVRKAQEAVISSRPFVEKLVEFLYVINEQLQLDDIDVPLTNIRPVKKVAI 129 (416)
Q Consensus 50 ~a~LkeIk~RI~SVknt~KITkAMkmVAaaKlrkaq~~l~~~rpY~~~l~~vl~~l~~~~~~~~~~~pl~~~~~~k~~~l 129 (416)
|++|++||+||+||++|+|||+||||||++|+||+|+++.+.+||++++.+++.+++...+ .++|++..++.+++++
T Consensus 1 M~~l~~lk~RI~sv~~i~kIt~aMkmvA~skl~k~~~~~~~~~~y~~~i~~~~~~l~~~~~---~~~~~~~~~~~~~~~~ 77 (284)
T PRK05621 1 MASLKEIRRRIKSVKNTQKITKAMEMVAASKLRKAQERAEASRPYAEKIRKVISHLASASE---YDHPLLVEREVKRVGY 77 (284)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhcCC---CCCcccccCCCceEEE
Confidence 5899999999999999999999999999999999999999999999999999999987541 2468776666677889
Q ss_pred EEEeCCCCCCccccHHHHHHHHHHHHHHhhCCCcEEEEEEechhHHHHhhccccceeeeeecCCCCCHHHHHHHHHHHHh
Q 014925 130 VIITGDRGLCGGFNKAVIKKAENRMVELKDMGLDCVVISVGKKGNAYFRHRSNVSVIRCIEGEGFYTVKEAQTIADNVFS 209 (416)
Q Consensus 130 IVItSDrGLCG~fNs~Iik~~~~~i~~~~~~g~~~~li~VGkKg~~~~~~~~~~~v~~~~~~~~~p~~~~a~~I~~~li~ 209 (416)
|||||||||||+||++|+|.+.+.+++++..|.++.+++||+||.++|++++..+...+.+.++.|+++.+..|++.+++
T Consensus 78 ivitSd~GLCG~fN~~v~k~~~~~~~~~~~~~~~~~l~~iG~k~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~i~~ 157 (284)
T PRK05621 78 IVVTSDRGLCGGYNSNIIKKVLELIKELEAQGKEVKLIVIGRKGVDFFKRRGINVVAEYTGLGDQPTFEEAIGIAKKLLD 157 (284)
T ss_pred EEEeCCCcccchhhHHHHHHHHHHHHHHHhcCCceEEEEehHHHHHHHHHcCCCceeeeeccCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999998876667778899999999999998876555555556678899999999999999
Q ss_pred hhhcCCccEEEEEeecccccccccceeeeeecCccCccccccCCcccchhhhhHhhhhcccccchhhccccccccCCCCC
Q 014925 210 LFVSEEVDKVELVYTKFVSLVKSDPVIHTLLPLSMKGVICNENGMCVDAVEDELFRLTTNEGKMIVERDSVTFNKGELSP 289 (416)
Q Consensus 210 ~~~~~e~d~V~vvYnkf~s~~~q~p~~~~LLPl~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (416)
.|.+|++|+|+++||+|+|+++|+|.+++|||++.... . .. .+.
T Consensus 158 ~~~~~~~~~i~viy~~f~~~~~~~~~~~~llP~~~~~~--------------~-----------------~~-----~~~ 201 (284)
T PRK05621 158 AYDNGEFDELYIVYNKFVNTLSQEPTVEQLLPLEKEEE--------------E-----------------EE-----TSW 201 (284)
T ss_pred HHHcCCCCEEEEEecccccceecceEEEEeCCCCcccc--------------c-----------------cc-----ccC
Confidence 99999999999999999999999999999999974210 0 00 012
Q ss_pred CccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhH
Q 014925 290 LMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGA 369 (416)
Q Consensus 290 ~~~fEp~~e~iL~~Llp~Yl~~~Ly~allES~aSE~aARm~AM~~AtdNA~eli~~Ltl~yNr~RQa~IT~EI~EIVsGA 369 (416)
.|.|||+++++|++|+|.||++.||+|++||++|||+|||+||++|||||+|++++|+++|||+||++||+||+|||+||
T Consensus 202 ~~~~ep~~~~vl~~l~~~yl~~~l~~al~es~asE~aaR~~AM~~At~Na~e~i~~L~~~~Nr~RQ~~IT~El~EIvsGa 281 (284)
T PRK05621 202 DYEYEPDAEEILDALLPRYVESQIYQALLENKASEQAARMTAMKNATDNAGDLIKKLTLVYNRARQAAITQEITEIVGGA 281 (284)
T ss_pred CeeeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHH
Q 014925 370 EAL 372 (416)
Q Consensus 370 eAL 372 (416)
+|+
T Consensus 282 eal 284 (284)
T PRK05621 282 EAL 284 (284)
T ss_pred hcC
Confidence 986
No 13
>TIGR03323 alt_F1F0_F1_gam alternate F1F0 ATPase, F1 subunit gamma. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 gamma subunit of this apparent second ATP synthase.
Probab=100.00 E-value=3.3e-74 Score=566.66 Aligned_cols=280 Identities=23% Similarity=0.321 Sum_probs=236.6
Q ss_pred HHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcccCCCCCCC-ccCCCCceEEEEEEeC
Q 014925 56 LKERLNTVKNTQKITEAMKLVAAARVRKAQEAVISSRPFVEKLVEFLYVINEQLQLDDIDVPL-TNIRPVKKVAIVIITG 134 (416)
Q Consensus 56 Ik~RI~SVknt~KITkAMkmVAaaKlrkaq~~l~~~rpY~~~l~~vl~~l~~~~~~~~~~~pl-~~~~~~k~~~lIVItS 134 (416)
||+||+||++|+|||+||||||+||+||||+++.+.|||++++.+++.+++.... ....+|. ...++.+++++|||||
T Consensus 1 ik~RI~Sv~~t~kITkAMkmVAasklrka~~~~~~~r~Y~~~i~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~IvitS 79 (285)
T TIGR03323 1 LRRKIESAADLQSVVRTMKALAAVSIRQYEDAVRALDDYYRTVELGLAVCLRRIP-LAALSPSGPNQKVSGHTGAIVFGS 79 (285)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhCC-CcccccccccccCCCcEEEEEEEC
Confidence 6899999999999999999999999999999999999999999999999886422 1112344 3333356788999999
Q ss_pred CCCCCccccHHHHHHHHHHHHHHhhCCCcEEEEEEechhHHHHhhccccceeeeeecCCCCCHHHHHHHHHHHHhhhh--
Q 014925 135 DRGLCGGFNKAVIKKAENRMVELKDMGLDCVVISVGKKGNAYFRHRSNVSVIRCIEGEGFYTVKEAQTIADNVFSLFV-- 212 (416)
Q Consensus 135 DrGLCG~fNs~Iik~~~~~i~~~~~~g~~~~li~VGkKg~~~~~~~~~~~v~~~~~~~~~p~~~~a~~I~~~li~~~~-- 212 (416)
|||||||||++|+|.+.+.++++. .++.+++||+||.++|++++...... +. +.++++.+..|++++++.|.
T Consensus 80 DrGLCG~fN~~l~k~~~~~~~~~~---~~~~~~~iG~K~~~~~~~~~~~i~~~-~~--~~~~~~~~~~i~~~i~~~~~~~ 153 (285)
T TIGR03323 80 DQGLVGQFNEVILTFAAEELARLP---GEATIWAVGERVASRLEDSGLTIGEL-FR--LPNSVGAITPLVSELLIEVEAR 153 (285)
T ss_pred CCcCchHhHHHHHHHHHHHHHhcc---CCeEEEEECHHHHHHHHHcCCCceEe-ec--CcCCHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999987642 36789999999999999776444433 33 34478888999999999995
Q ss_pred --cCCccEEEEEeecccccccccceeeeeecCccCccccccCCcccchhhhhHhhhhcccccchhhccccccccCCCCCC
Q 014925 213 --SEEVDKVELVYTKFVSLVKSDPVIHTLLPLSMKGVICNENGMCVDAVEDELFRLTTNEGKMIVERDSVTFNKGELSPL 290 (416)
Q Consensus 213 --~~e~d~V~vvYnkf~s~~~q~p~~~~LLPl~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (416)
+|++|+|+|+||+|+|.++|+|.+++|||++... .+.. . + ..|. .. ..
T Consensus 154 ~~~~~~d~v~iiY~~f~s~~~~~~~~~~llP~~~~~-------------~~~~----~--------~--~~~~-~~--~~ 203 (285)
T TIGR03323 154 REQGQLAELYLFFNRPSSGGSYEPTCQRLLPLDETW-------------QRQL----A--------T--QQWP-TK--CL 203 (285)
T ss_pred hhcCCCcEEEEEecccccCcccceeeEEeeCCCccc-------------cccc----c--------c--cccc-cC--CC
Confidence 9999999999999999999999999999995310 0000 0 0 0000 00 13
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHH
Q 014925 291 MLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAE 370 (416)
Q Consensus 291 ~~fEp~~e~iL~~Llp~Yl~~~Ly~allES~aSE~aARm~AM~~AtdNA~eli~~Ltl~yNr~RQa~IT~EI~EIVsGAe 370 (416)
|+|||+++++|++|+|.||++.||+|++||+||||+|||+||++|||||+||+++|+++|||+||++||+||+|||+||+
T Consensus 204 ~~~ep~~~~il~~L~~~yl~~~ly~alles~asE~aaRm~AM~~At~Na~e~i~~L~~~yNr~RQa~IT~Ei~EIvsGae 283 (285)
T TIGR03323 204 PELMGEPEETFSALIREYLFVSLFRACAESLASENASRLAAMQRAEKNIDELLDDLNRRFHRLRQSAIDEELFDVVSGFE 283 (285)
T ss_pred ceecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HH
Q 014925 371 AL 372 (416)
Q Consensus 371 AL 372 (416)
||
T Consensus 284 al 285 (285)
T TIGR03323 284 AL 285 (285)
T ss_pred cC
Confidence 86
No 14
>KOG1531 consensus F0F1-type ATP synthase, gamma subunit [Energy production and conversion]
Probab=100.00 E-value=1.8e-71 Score=529.74 Aligned_cols=275 Identities=41% Similarity=0.563 Sum_probs=245.5
Q ss_pred cccHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcccCCCCCCCccCCCCceEEE
Q 014925 50 RCGLRELKERLNTVKNTQKITEAMKLVAAARVRKAQEAVISSRPFVEKLVEFLYVINEQLQLDDIDVPLTNIRPVKKVAI 129 (416)
Q Consensus 50 ~a~LkeIk~RI~SVknt~KITkAMkmVAaaKlrkaq~~l~~~rpY~~~l~~vl~~l~~~~~~~~~~~pl~~~~~~k~~~l 129 (416)
+++||+|+.||+|||||||||++|||||++|++|||+++.+.|||.+...++++++ +.++|+.+.+++||+++
T Consensus 28 ~Atlkei~~RlkSVKNiQKITksMKmVAaaK~~rAer~~~~ar~~~~~~~~~~~~~-------d~~~p~~e~~~~kK~~l 100 (304)
T KOG1531|consen 28 FATLKEIRIRLKSVKNIQKITKSMKMVAAAKYARAERALKAARPYGEGAVEFFKNI-------DIDVPLTEEGEVKKVLL 100 (304)
T ss_pred cchHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhccCccchHHHHHHhhc-------cCCCCccccccccceEE
Confidence 69999999999999999999999999999999999999999999999999998876 45789988899999999
Q ss_pred EEEeCCCCCCccccHHHHHHHHHHHHHHhhCCCcEEEEEEechhHHHHhhccccceeeee-ecC-CCCCHHHHHHHHHHH
Q 014925 130 VIITGDRGLCGGFNKAVIKKAENRMVELKDMGLDCVVISVGKKGNAYFRHRSNVSVIRCI-EGE-GFYTVKEAQTIADNV 207 (416)
Q Consensus 130 IVItSDrGLCG~fNs~Iik~~~~~i~~~~~~g~~~~li~VGkKg~~~~~~~~~~~v~~~~-~~~-~~p~~~~a~~I~~~l 207 (416)
|++|||||||||+|+.|.|.+..++++++. |+++.+++||+|++.+|.|+..+.+...+ ++| .+|+|.++..|++++
T Consensus 101 V~vtsDrGLCGgihssi~K~~r~~l~~~~~-~~e~~vv~iGdK~ra~l~R~~~~~i~ls~~eig~~pptf~~asvia~~i 179 (304)
T KOG1531|consen 101 VAVTSDRGLCGGIHSSIAKKARRELNDLKG-GKEVRVVIIGDKIRAILLRLHPNSILLSINEIGRAPPTFEDASVIADEI 179 (304)
T ss_pred EEEecCCccccchhHHHHHHHHHHHHhccC-CCceEEEEEchhhhhheeecCchhhhhhHhhcCCCCCcHHHHHHHHHHH
Confidence 999999999999999999999999998766 88999999999999999887755555444 454 588999999999999
Q ss_pred HhhhhcCCccEEEEEeecccccccccceeeeeecCccCccccccCCcccchhhhhHhhhhcccccchhhccccccccCCC
Q 014925 208 FSLFVSEEVDKVELVYTKFVSLVKSDPVIHTLLPLSMKGVICNENGMCVDAVEDELFRLTTNEGKMIVERDSVTFNKGEL 287 (416)
Q Consensus 208 i~~~~~~e~d~V~vvYnkf~s~~~q~p~~~~LLPl~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 287 (416)
++.- ++||++.|+||+|+|.++++|+.++|||+...++.|+.. |.
T Consensus 180 l~~~--~e~d~~~ivyNkF~SvVs~e~~~~~il~l~~i~~s~~l~--~~------------------------------- 224 (304)
T KOG1531|consen 180 LLSG--YEFDKGSIVYNKFKSVVSYETSEKPILPLETIEESESLS--CY------------------------------- 224 (304)
T ss_pred Hhhh--ccccceEEEeecchhheeeccccccccCHHHhccccccc--ch-------------------------------
Confidence 8664 799999999999999999999999999998643322211 11
Q ss_pred CCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 014925 288 SPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVA 367 (416)
Q Consensus 288 ~~~~~fEp~~e~iL~~Llp~Yl~~~Ly~allES~aSE~aARm~AM~~AtdNA~eli~~Ltl~yNr~RQa~IT~EI~EIVs 367 (416)
++ -.++++..|+|.||..+||+|+.||.+||++|||+||+||++||.|||++|++.|||.|||.||.||+|||+
T Consensus 225 -----d~-iddev~q~~~e~~la~~I~~am~Es~~SE~saRm~AMdnaSkNAgemi~kltl~yNRtRQA~IT~ELieIis 298 (304)
T KOG1531|consen 225 -----DS-IDDEVLQSLMEYSLANQIYYAMKESATSELSARMNAMDNASKNAGEMIDKLTLTYNRTRQAVITNELIEIIS 298 (304)
T ss_pred -----hh-hhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCHHHHHHHHhhhhhhhcccchHHHHHHHHh
Confidence 11 126677789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHh
Q 014925 368 GAEALT 373 (416)
Q Consensus 368 GAeAL~ 373 (416)
||+||.
T Consensus 299 GA~al~ 304 (304)
T KOG1531|consen 299 GASALT 304 (304)
T ss_pred hhhhcC
Confidence 999973
No 15
>PF00700 Flagellin_C: Bacterial flagellin C-terminal helical region; InterPro: IPR001029 Bacterial flagella are responsible for motility and chemotaxis []. They comprise a basal body, a hook and a filament, the latter accounting for 98% of the mass []. Flagellin is the subunit protein that polymerises to form the flagellae [], the subunits being transported through the centre of the filament to the tip, where they then polymerise []. Both the N- and C- termini of the subunit protein, which are alpha-helical in structure [], are required to mediate polymerisation. Although no export or assembly consensus sequences have been identified, Ala, Val, Leu, Ile, Gly, Ser, Thr, Asn, Gln and Asp tend to make up around 90% of the sequence, Cys and Trp being absent []. This entry represents the N and C termini that come together to form the D0 and D1 structural domains []. These domains are responsible for flagellin's ability to polymerise into a filament. ; GO: 0005198 structural molecule activity, 0001539 ciliary or flagellar motility, 0009288 bacterial-type flagellum; PDB: 1ORY_B 3V47_C 1IO1_A 1UCU_A 3A5X_A 3K8V_A 2ZBI_B 3K8W_A.
Probab=77.65 E-value=19 Score=28.74 Aligned_cols=54 Identities=17% Similarity=0.297 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHHHH
Q 014925 319 ESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 372 (416)
Q Consensus 319 ES~aSE~aARm~AM~~AtdNA~eli~~Ltl~yNr~RQa~IT~EI~EIVsGAeAL 372 (416)
.+..++.++|+..++.+.++.+.....|+....+.+-.-+.+++.++...--++
T Consensus 12 ~~~~a~lGa~~~~l~~~~~~~~~~~~~l~~~~s~i~d~D~a~~~~~l~~~~~~~ 65 (86)
T PF00700_consen 12 SSARAQLGARQNRLESAKDRLSNQSENLTASLSNIEDADMAEAITNLTQAQTQL 65 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999998765554
No 16
>PF08967 DUF1884: Domain of unknown function (DUF1884); InterPro: IPR014418 This group represents an uncharacterised conserved protein.; PDB: 2PK8_A.
Probab=50.24 E-value=29 Score=28.59 Aligned_cols=36 Identities=19% Similarity=0.373 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHhhCCCcEEEEEEechhHHHHhh
Q 014925 144 KAVIKKAENRMVELKDMGLDCVVISVGKKGNAYFRH 179 (416)
Q Consensus 144 s~Iik~~~~~i~~~~~~g~~~~li~VGkKg~~~~~~ 179 (416)
.+|+..+++.+++++..|-++.++.+|...+.|++.
T Consensus 8 i~il~~ie~~inELk~dG~ePDivL~G~ef~e~~~~ 43 (85)
T PF08967_consen 8 IRILELIEEKINELKEDGFEPDIVLVGPEFYEFLSE 43 (85)
T ss_dssp HHHHHHHHHHHHHHHHTT----EEEE-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCEEEEcHHHHHHHHH
Confidence 356667777788999999999999999999999875
No 17
>KOG3287 consensus Membrane trafficking protein, emp24/gp25L/p24 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.76 E-value=46 Score=32.25 Aligned_cols=44 Identities=18% Similarity=0.381 Sum_probs=37.7
Q ss_pred cccccHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhccH
Q 014925 48 PIRCGLRELKERLNTVKNTQKITEAMKLVAAARVRKAQEAVISSRP 93 (416)
Q Consensus 48 ~~~a~LkeIk~RI~SVknt~KITkAMkmVAaaKlrkaq~~l~~~rp 93 (416)
+.--++.+|.++|.+|++ .|+++|.+-+.+|.|+|+++......
T Consensus 150 ~Ld~kl~di~~~i~~i~~--nl~k~~~~q~~lRa~EaRDr~L~esN 193 (236)
T KOG3287|consen 150 QLDVKLDDIEDSIGTIKN--NLNKMWQYQALLRAREARDRNLQESN 193 (236)
T ss_pred hhcccHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhhHHHHhcc
Confidence 333489999999999996 79999999999999999998776655
No 18
>PF10138 vWA-TerF-like: vWA found in TerF C terminus ; InterPro: IPR019303 This entry represents the N-terminal domain of a family of proteins that confer resistance to the metalloid element tellurium and its salts.
Probab=38.08 E-value=1.9e+02 Score=27.58 Aligned_cols=100 Identities=11% Similarity=0.183 Sum_probs=56.0
Q ss_pred ccHHHHHHHHHHHHHHhhcccCCCCCCCccCCCCceEEEEEEeCCCCCCccccHHHHHHHHHHHHHHhhCCCcEEEEEEe
Q 014925 91 SRPFVEKLVEFLYVINEQLQLDDIDVPLTNIRPVKKVAIVIITGDRGLCGGFNKAVIKKAENRMVELKDMGLDCVVISVG 170 (416)
Q Consensus 91 ~rpY~~~l~~vl~~l~~~~~~~~~~~pl~~~~~~k~~~lIVItSDrGLCG~fNs~Iik~~~~~i~~~~~~g~~~~li~VG 170 (416)
...|...|++++.+..... +...-.+|+|=+|-|. +.+ +.+.+.+.+-.....-..++.||
T Consensus 82 ~t~y~~vm~~v~~~y~~~~-------------~~~~P~~VlFiTDG~~----~~~--~~~~~~i~~as~~pifwqFVgiG 142 (200)
T PF10138_consen 82 GTNYAPVMEDVLDHYFKRE-------------PSDAPALVLFITDGGP----DDR--RAIEKLIREASDEPIFWQFVGIG 142 (200)
T ss_pred CcchHHHHHHHHHHHhhcC-------------CCCCCeEEEEEecCCc----cch--HHHHHHHHhccCCCeeEEEEEec
Confidence 3567777888777654321 1111257888889653 333 44444454434444556789999
Q ss_pred chhHHHHhhccc---c--ceeeeeecCCCCCHHHHHHHHHHHHhh
Q 014925 171 KKGNAYFRHRSN---V--SVIRCIEGEGFYTVKEAQTIADNVFSL 210 (416)
Q Consensus 171 kKg~~~~~~~~~---~--~v~~~~~~~~~p~~~~a~~I~~~li~~ 210 (416)
+...++|++-.. . ....++.+++.+..++. ++-+.+++.
T Consensus 143 ~~~f~fL~kLD~l~gR~vDNa~Ff~~~d~~~lsD~-eLy~~LL~E 186 (200)
T PF10138_consen 143 DSNFGFLEKLDDLAGRVVDNAGFFAIDDIDELSDE-ELYDRLLAE 186 (200)
T ss_pred CCcchHHHHhhccCCcccCCcCeEecCCcccCCHH-HHHHHHHHH
Confidence 999999988532 1 12345555554443332 344455443
No 19
>PF15019 C9orf72-like: C9orf72-like protein family
Probab=35.90 E-value=1e+02 Score=29.94 Aligned_cols=76 Identities=13% Similarity=0.080 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHHHHhccccCC----Ccccccch-H
Q 014925 314 LRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEALTQIRLRV----PSFHGHVS-F 388 (416)
Q Consensus 314 y~allES~aSE~aARm~AM~~AtdNA~eli~~Ltl~yNr~RQa~IT~EI~EIVsGAeAL~~~~~~~----~~~~~~~~-~ 388 (416)
...+.+.....-+.++.+.-.- .++.|. ..|.||.-+..=.+++..-.... .-.-..++ |
T Consensus 70 ~~~~~~~~~~~~~~k~k~~~~~---~~~~i~------------~~t~ei~~~~~~l~~l~~~~i~~~~~i~I~~t~~~~F 134 (233)
T PF15019_consen 70 LHSICEDRLTDIIPKLKISLQK---EQDPIS------------KLTPEIQRILILLSSLFSSGIPSQPPIQIDDTDFNDF 134 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc---chhHHH------------HHHHHHHHHHHHHHHHHhcCCCCCCCCcccHHHHHHH
Confidence 3444555555666665554333 222232 35777777777777775443333 33345566 9
Q ss_pred HHHHHHhhccccccch
Q 014925 389 LHIIWLNHCLDCVNCR 404 (416)
Q Consensus 389 ~~~~~~~~~~~~~~~~ 404 (416)
+...+++|+..|..|-
T Consensus 135 l~~aITSHLqTqg~TI 150 (233)
T PF15019_consen 135 LSRAITSHLQTQGCTI 150 (233)
T ss_pred HHHHHHHhhhcCCeEE
Confidence 9999999999998873
No 20
>PF14156 AbbA_antirepres: Antirepressor AbbA
Probab=33.01 E-value=2.3e+02 Score=22.02 Aligned_cols=37 Identities=30% Similarity=0.482 Sum_probs=28.2
Q ss_pred HHHHHH-HHHHHHHHHHHHhHHHH-HHHHHHHHHHhHHH
Q 014925 320 SFASEV-AARMSAMSTATDNADEL-KKNLSVAYNQERQA 356 (416)
Q Consensus 320 S~aSE~-aARm~AM~~AtdNA~el-i~~Ltl~yNr~RQa 356 (416)
.+|+|. ++-.+-.++-++|+++. -++|...|+|.|++
T Consensus 25 ~YA~Ells~El~DIE~G~K~vD~~~Yk~l~rLydRl~~E 63 (63)
T PF14156_consen 25 NYASELLSSELNDIENGTKNVDESQYKQLLRLYDRLRNE 63 (63)
T ss_pred HHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHhcC
Confidence 445554 44566789999999876 58899999999974
No 21
>PRK04456 acetyl-CoA decarbonylase/synthase complex subunit beta; Reviewed
Probab=32.53 E-value=75 Score=33.85 Aligned_cols=24 Identities=38% Similarity=0.565 Sum_probs=18.5
Q ss_pred EEEEeCCC-CCCccccHHHHHHHHH
Q 014925 129 IVIITGDR-GLCGGFNKAVIKKAEN 152 (416)
Q Consensus 129 lIVItSDr-GLCG~fNs~Iik~~~~ 152 (416)
+=|||-|| ||||++|=-=-|.+.+
T Consensus 202 VCvvtPeR~~lCGaisW~D~rAa~~ 226 (463)
T PRK04456 202 VCVITPDRPSLCGAINWFDGRAAAK 226 (463)
T ss_pred eEEECCCCcccccccchhhhhhhhh
Confidence 44789998 9999999766666543
No 22
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=31.21 E-value=2.3e+02 Score=29.45 Aligned_cols=57 Identities=19% Similarity=0.212 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhH
Q 014925 306 PLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGA 369 (416)
Q Consensus 306 p~Yl~~~Ly~allES~aSE~aARm~AM~~AtdNA~eli~~Ltl~yNr~RQa~IT~EI~EIVsGA 369 (416)
+.||+.++-..+.+ -.+...++..++..-+.+.+-+..++.++| .||+||.+|=.-.
T Consensus 261 Ek~iN~qle~l~~e--Yr~~~~~ls~~~~~y~~~s~~V~~~t~~L~-----~IseeLe~vK~em 317 (359)
T PF10498_consen 261 EKYINNQLEPLIQE--YRSAQDELSEVQEKYKQASEGVSERTRELA-----EISEELEQVKQEM 317 (359)
T ss_pred HHHHHHHhHHHHHH--HHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-----HHHHHHHHHHHHH
Confidence 45899888887777 566778888888888888888899998885 4888888876544
No 23
>smart00216 VWD von Willebrand factor (vWF) type D domain. Von Willebrand factor contains several type D domains: D1 and D2 are present within the N-terminal propeptide whereas the remaining D domains are required for multimerisation.
Probab=27.53 E-value=21 Score=31.58 Aligned_cols=12 Identities=42% Similarity=0.922 Sum_probs=9.9
Q ss_pred CCCCCccccHHH
Q 014925 135 DRGLCGGFNKAV 146 (416)
Q Consensus 135 DrGLCG~fNs~I 146 (416)
=+||||.||.+-
T Consensus 142 ~~GLCGn~ng~~ 153 (162)
T smart00216 142 TCGLCGNFDGEP 153 (162)
T ss_pred eeEccCCCCCCc
Confidence 479999999764
No 24
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=26.71 E-value=1.1e+02 Score=22.86 Aligned_cols=33 Identities=18% Similarity=0.337 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHH
Q 014925 321 FASEVAARMSAMSTATDNADELKKNLSVAYNQERQA 356 (416)
Q Consensus 321 ~aSE~aARm~AM~~AtdNA~eli~~Ltl~yNr~RQa 356 (416)
...|...|+.+.+.-- +.=|++|...|...||-
T Consensus 9 s~~eL~~rl~~LD~~M---E~Eieelr~RY~~KRqP 41 (49)
T PF11629_consen 9 SYEELQQRLASLDPEM---EQEIEELRQRYQAKRQP 41 (49)
T ss_dssp -HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCHHH---HHHHHHHHHHHHHhhcc
Confidence 3467788888887654 45589999999999996
No 25
>PF02698 DUF218: DUF218 domain; InterPro: IPR003848 This domain of unknown function is found in several uncharacterised proteins.; PDB: 3CA8_A.
Probab=26.30 E-value=3.1e+02 Score=23.86 Aligned_cols=91 Identities=14% Similarity=0.081 Sum_probs=35.8
Q ss_pred EEEEEeCCCCCCc----cccHHHHHHHHHHHHHHhhCCCcEEEEEEech-----------hHHHHhhccccceeeeeecC
Q 014925 128 AIVIITGDRGLCG----GFNKAVIKKAENRMVELKDMGLDCVVISVGKK-----------GNAYFRHRSNVSVIRCIEGE 192 (416)
Q Consensus 128 ~lIVItSDrGLCG----~fNs~Iik~~~~~i~~~~~~g~~~~li~VGkK-----------g~~~~~~~~~~~v~~~~~~~ 192 (416)
++||+|+-...-| ..-.++ ..+.+..++ |....+++.|.. .++++...|...-.-..+..
T Consensus 4 ~ivVlG~~~~~~~~~~~~~~~R~-~~a~~L~~~----g~~~~il~SGg~~~~~~~~ea~~~~~~l~~~gvp~~~I~~e~~ 78 (155)
T PF02698_consen 4 AIVVLGSALDPDGQLSPESRERL-DEAARLYKA----GYAPRILFSGGYGHGDGRSEAEAMRDYLIELGVPEERIILEPK 78 (155)
T ss_dssp EEEEES-----------S-HHHH-HHHHHHHH-----HHT--EEEE--SSTTHTS-HHHHHHHHHHHT---GGGEEEE--
T ss_pred EEEECCcCccccccccHhHHHHH-HHHHHHHhc----CCCCeEEECCCCCCCCCCCHHHHHHHHHHhcccchheeEccCC
Confidence 4677772222222 233333 444444443 445568889933 33566555522111112222
Q ss_pred CCCCHHHHHHHHHHHHhhhhcCCccEEEEEeeccc
Q 014925 193 GFYTVKEAQTIADNVFSLFVSEEVDKVELVYTKFV 227 (416)
Q Consensus 193 ~~p~~~~a~~I~~~li~~~~~~e~d~V~vvYnkf~ 227 (416)
...|++.+....+. +...++.+|.||-..|.
T Consensus 79 s~~T~ena~~~~~~----~~~~~~~~iilVT~~~H 109 (155)
T PF02698_consen 79 STNTYENARFSKRL----LKERGWQSIILVTSPYH 109 (155)
T ss_dssp --SHHHHHHHHHHH----HHT-SSS-EEEE--CCC
T ss_pred CCCHHHHHHHHHHH----HHhhcCCeEEEECCHHH
Confidence 34566666544433 33455689999988875
No 26
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=25.79 E-value=6.9e+02 Score=26.71 Aligned_cols=120 Identities=16% Similarity=0.168 Sum_probs=60.3
Q ss_pred ccccCCCCCCCCCCCccccccccHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHh-------------------
Q 014925 30 YLCNFSSRKYPSKSSVFTPIRCGLRELKERLNTVKNTQKITEAMKLVAAARVRKAQEAVIS------------------- 90 (416)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~a~LkeIk~RI~SVknt~KITkAMkmVAaaKlrkaq~~l~~------------------- 90 (416)
++.|....+.|.. +..---+.||..||..++.+.+-.+ +.+ +.++++.++++..
T Consensus 63 ~~~~~~~~~~~~~----l~fe~pi~ele~ki~el~~~~~~~~-~~~--~~ei~~l~~~~~~~~~~i~~~Lt~wq~vq~aR 135 (431)
T PLN03230 63 RFKPLKNKPKPVT----LPFEKPIVDLENRIDEVRELANKTG-VDF--SAQIAELEERYDQVRRELYSRLTPVQRLSVAR 135 (431)
T ss_pred hcCCCCCCCCCCc----cchhhHHHHHHHHHHHHHhhhhccc-ccH--HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 5666655555433 4443458999999998887654221 111 2334433333322
Q ss_pred --ccHHHHHHH-HHHHHHHhhcccCC--CCCCCc-cCCCCceEEEEEEeCCCCCC---------ccccHHHHHHHHHHHH
Q 014925 91 --SRPFVEKLV-EFLYVINEQLQLDD--IDVPLT-NIRPVKKVAIVIITGDRGLC---------GGFNKAVIKKAENRMV 155 (416)
Q Consensus 91 --~rpY~~~l~-~vl~~l~~~~~~~~--~~~pl~-~~~~~k~~~lIVItSDrGLC---------G~fNs~Iik~~~~~i~ 155 (416)
-|||...+- .++.++....+... .|.... ...-....-+.||+.|+|.. |..+..=.+++.++++
T Consensus 136 hp~RP~~~d~I~~i~ddf~EL~Gdr~~~dD~aIVtG~grI~GrpV~VIandkg~~~ke~~~rnfG~~~peGyRKAlR~mk 215 (431)
T PLN03230 136 HPNRPTFLDHVLNMTDKWVELHGDRAGFDDPAIVCGIGSMEGMSFMFIGHQKGRNTKENIYRNFAMPQPNGYRKALRFMR 215 (431)
T ss_pred CCCCCCHHHHHHHhhhHHhhhcCcccCCCCCCeEEEEEEECCEEEEEEEeccCcccccccccCCCCCCHHHHHHHHHHHH
Confidence 345544432 23333332221100 000010 00001234578999999864 7777777788877765
Q ss_pred H
Q 014925 156 E 156 (416)
Q Consensus 156 ~ 156 (416)
-
T Consensus 216 l 216 (431)
T PLN03230 216 H 216 (431)
T ss_pred H
Confidence 3
No 27
>PRK05752 uroporphyrinogen-III synthase; Validated
Probab=25.57 E-value=93 Score=29.94 Aligned_cols=48 Identities=13% Similarity=0.041 Sum_probs=32.0
Q ss_pred eEEEEEEeCCCCCCccccHHHHHHHHHHHHHHhhCCCcEEEEEEechhHHHHhhccc
Q 014925 126 KVAIVIITGDRGLCGGFNKAVIKKAENRMVELKDMGLDCVVISVGKKGNAYFRHRSN 182 (416)
Q Consensus 126 ~~~lIVItSDrGLCG~fNs~Iik~~~~~i~~~~~~g~~~~li~VGkKg~~~~~~~~~ 182 (416)
...+|||||-.|. +.+.+.+.+....-....+++||++-.+.+++.|.
T Consensus 55 ~~d~iifTS~naV---------~~~~~~l~~~~~~~~~~~~~aVG~~Ta~al~~~G~ 102 (255)
T PRK05752 55 RYCAVIVVSKPAA---------RLGLELLDRYWPQPPQQPWFSVGAATAAILQDYGL 102 (255)
T ss_pred CCCEEEEECHHHH---------HHHHHHHHhhCCCCcCCEEEEECHHHHHHHHHcCC
Confidence 3458999997773 44444443321111236799999999999998774
No 28
>PF03598 CdhC: CO dehydrogenase/acetyl-CoA synthase complex beta subunit; InterPro: IPR004461 The carbon monoxide dehydrogenase alpha subunit (1.2.99.2 from EC) catalyses the interconversion of CO and CO2 and the synthesis of acteyl-coA from the methylated corrinoid/iron sulphur protein, CO and CoA. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.; GO: 0018492 carbon-monoxide dehydrogenase (acceptor) activity, 0006084 acetyl-CoA metabolic process; PDB: 2Z8Y_O 1MJG_N 3GIT_A 3S2X_B 3I01_O 3I04_N 1OAO_C 1RU3_A.
Probab=24.71 E-value=36 Score=35.71 Aligned_cols=24 Identities=33% Similarity=0.608 Sum_probs=15.5
Q ss_pred EEEEeCCC-CCCccccHHHHHHHHH
Q 014925 129 IVIITGDR-GLCGGFNKAVIKKAEN 152 (416)
Q Consensus 129 lIVItSDr-GLCG~fNs~Iik~~~~ 152 (416)
+=|||-|| ||||++|=-=.|++-+
T Consensus 200 VCvvtPeR~~lCGaisWlDakAa~e 224 (411)
T PF03598_consen 200 VCVVTPERPGLCGAISWLDAKAAYE 224 (411)
T ss_dssp -EEEBTTB--TTSS--HHHHHHHHH
T ss_pred eEEECCCCcccccccchhhhhhhhc
Confidence 34789998 9999999776666553
No 29
>PF10960 DUF2762: Protein of unknown function (DUF2762); InterPro: IPR024405 BhlA is a SP-beta prophage-derived protein found in Bacillus subtilis [, ] and other Bacilli. A related protein, UviB, has also been described in Clostridia, where it is believed to be involved in bacteriocin secretion or immunity [, ].
Probab=23.82 E-value=3.8e+02 Score=21.36 Aligned_cols=66 Identities=15% Similarity=0.112 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 014925 298 AQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEI 365 (416)
Q Consensus 298 e~iL~~Llp~Yl~~~Ly~allES~aSE~aARm~AM~~AtdNA~eli~~Ltl~yNr~RQa~IT~EI~EI 365 (416)
++|+..++.+=+++.||-.|+=+..=++.-|-.-++.=.++-.++|++++-++|... .|-..+.||
T Consensus 3 ~ei~k~~~sQG~fA~LFv~Ll~yvlK~~~~re~~~~~RE~kyq~~I~~lte~~~~~~--~~~~dv~ei 68 (71)
T PF10960_consen 3 EEIIKLALSQGIFAVLFVWLLFYVLKENKKREEKQEEREEKYQEQIEKLTEKLNVIE--EIKEDVKEI 68 (71)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 567777788888888888888888888886666666777888888888888887664 343444443
No 30
>PF07341 DUF1473: Protein of unknown function (DUF1473); InterPro: IPR009941 This entry represents a family of hypothetical proteins of around 150 residues in length found in Borrelia species. The function of this family is unknown.
Probab=23.36 E-value=4.2e+02 Score=24.15 Aligned_cols=54 Identities=20% Similarity=0.277 Sum_probs=45.1
Q ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhc
Q 014925 54 RELKERLNTVKNTQKITEAMKLVAAARVRKAQEAVISSRPFVEKLVEFLYVINEQL 109 (416)
Q Consensus 54 keIk~RI~SVknt~KITkAMkmVAaaKlrkaq~~l~~~rpY~~~l~~vl~~l~~~~ 109 (416)
.++..+++-++-+++||+-| |+..=+-..-..+..-|.|..--++.|-.++-.+
T Consensus 37 d~li~kLN~~~~Lk~IT~lM--Is~~FlDEFY~ILn~nR~y~s~YK~~L~~Ilysi 90 (163)
T PF07341_consen 37 DELIDKLNNLQYLKEITSLM--ISPGFLDEFYEILNQNREYSSLYKYYLPTILYSI 90 (163)
T ss_pred hHHHHHhhhHHHHHHHHHHH--cCHhHHHHHHHHHhhhHHHHHHHHHHHHHHHhhh
Confidence 45799999999999999975 8888888888899999999988888777765543
No 31
>PF01956 DUF106: Integral membrane protein DUF106; InterPro: IPR002809 This entry represents a group of eukaryotic and archaeal proteins that have no known function. Members are predicted to be integral membrane proteins.; GO: 0016020 membrane
Probab=23.27 E-value=1.4e+02 Score=27.08 Aligned_cols=92 Identities=11% Similarity=0.088 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHHHHhcccc
Q 014925 298 AQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEALTQIRL 377 (416)
Q Consensus 298 e~iL~~Llp~Yl~~~Ly~allES~aSE~aARm~AM~~AtdNA~eli~~Ltl~yNr~RQa~IT~EI~EIVsGAeAL~~~~~ 377 (416)
--++-.++..|+...+...+.+-...+...|+.+.+...+++.+--+.+..+-=+.||..+.++=.|+-. ..+
T Consensus 18 ~v~~~~~~~~~~s~l~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~-------~~m 90 (168)
T PF01956_consen 18 VVFLIAILRGLISELLQKFLIDRKMDKYQKRMKEFQKRYRELRKNGDFKKPKKLEKRQMELMEKQQEMMM-------MMM 90 (168)
T ss_pred HHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHHHHHH-------HHH
Confidence 3455677777777666666543335667777777777777777766666666667777777776666622 222
Q ss_pred CCCcccccchHHHHHHHhh
Q 014925 378 RVPSFHGHVSFLHIIWLNH 396 (416)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~ 396 (416)
+.--..+++.+.-..|+++
T Consensus 91 K~~~~~~v~~i~i~~wi~~ 109 (168)
T PF01956_consen 91 KPMFVTMVPQIPIFYWINY 109 (168)
T ss_pred HHhHHHHHHHHHHHHHHHH
Confidence 2223344455444555544
No 32
>PF00094 VWD: von Willebrand factor type D domain; InterPro: IPR001846 A family of growth regulators (originally called cef10, connective tissue growth factor, fisp-12, cyr61, or, alternatively, beta IG-M1 and beta IG-M2), all belong to immediate-early genes expressed after induction by growth factors or certain oncogenes. Sequence analysis of this family revealed the presence of four distinct modules. Each module has homologues in other extracellular mosaic proteins such as Von Willebrand factor, slit, thrombospondins, fibrillar collagens, IGF-binding proteins and mucins. Classification and analysis of these modules suggests the location of binding regions and, by analogy to better characterised modules in other proteins, sheds some light onto the structure of this new family []. The vWF domain is found in various plasma proteins: complement factors B, C2, CR3 and CR4; the integrins (I-domains); collagen types VI, VII, XII and XIV; and other extracellular proteins [, , ]. Although the majority of VWA-containing proteins are extracellular, the most ancient ones present in all eukaryotes are all intracellular proteins involved in functions such as transcription, DNA repair, ribosomal and membrane transport and the proteasome. A common feature appears to be involvement in multiprotein complexes. Proteins that incorporate vWF domains participate in numerous biological events (e.g. cell adhesion, migration, homing, pattern formation, and signal transduction), involving interaction with a large array of ligands []. A number of human diseases arise from mutations in VWA domains. Secondary structure prediction from 75 aligned vWF sequences has revealed a largely alternating sequence of alpha-helices and beta-strands []. One of the functions of von Willebrand factor (vWF) is to serve as a carrier of clotting factor VIII (FVIII). The native conformation of the D' domain of vWF is not only required for factor VIII (FVIII) binding but also for normal multimerisation and optimal secretion. The interaction between blood clotting factor VIII and VWF is necessary for normal survival of blood clotting factor VIII in blood circulation. The VWFD domain is a highly structured region, in which the first conserved Cys has been found to form a disulphide bridge with the second conserved one [].
Probab=23.14 E-value=33 Score=29.72 Aligned_cols=14 Identities=36% Similarity=0.700 Sum_probs=10.5
Q ss_pred CCCCCCccccHHHH
Q 014925 134 GDRGLCGGFNKAVI 147 (416)
Q Consensus 134 SDrGLCG~fNs~Ii 147 (416)
.=.||||.||.+-.
T Consensus 137 ~t~GLCG~~dg~~~ 150 (159)
T PF00094_consen 137 KTCGLCGNFDGEPE 150 (159)
T ss_pred ccccccCCCCCCcc
Confidence 34699999997643
No 33
>COG1344 FlgL Flagellin and related hook-associated proteins [Cell motility and secretion]
Probab=22.82 E-value=1.9e+02 Score=29.56 Aligned_cols=49 Identities=20% Similarity=0.234 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 014925 319 ESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVA 367 (416)
Q Consensus 319 ES~aSE~aARm~AM~~AtdNA~eli~~Ltl~yNr~RQa~IT~EI~EIVs 367 (416)
.+..++..++..-++.+.+|...+.+.|+..+.+.|-.-.++|+.+...
T Consensus 285 ~~~ra~lGa~qnrl~~~~~~l~~~~~nl~~~~s~i~D~D~aee~t~l~~ 333 (360)
T COG1344 285 TSARAELGAVQNRLESAINNLSNQSDNLTAAESRIVDVDMAEESTELTK 333 (360)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHH
Confidence 3688999999999999999999999999999999999999999998753
No 34
>TIGR00316 cdhC CO dehydrogenase/CO-methylating acetyl-CoA synthase complex, beta subunit. Nomenclature follows the description for Methanosarcina thermophila. The CO-methylating acetyl-CoA synthase is considered the defining enzyme of the Wood-Ljungdahl pathway, used for acetate catabolism by sulfate reducing bacteria but for acetate biosynthesis by acetogenic bacteria such as oorella thermoacetica (f. Clostridium thermoaceticum).
Probab=22.49 E-value=41 Score=35.68 Aligned_cols=24 Identities=38% Similarity=0.616 Sum_probs=18.5
Q ss_pred EEEEeCCC-CCCccccHHHHHHHHH
Q 014925 129 IVIITGDR-GLCGGFNKAVIKKAEN 152 (416)
Q Consensus 129 lIVItSDr-GLCG~fNs~Iik~~~~ 152 (416)
+=|||-|| ||||++|=-=-|.+.+
T Consensus 199 VCvvtPeR~~lCGaisW~D~rAa~~ 223 (458)
T TIGR00316 199 VCIVTPDRPSLCGAINWFDARAAAK 223 (458)
T ss_pred eEEECCCCcccccccchhhhhhhhh
Confidence 44789998 9999999766666543
No 35
>PRK08073 flgL flagellar hook-associated protein FlgL; Validated
Probab=21.97 E-value=2.1e+02 Score=28.28 Aligned_cols=51 Identities=12% Similarity=0.074 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhH
Q 014925 319 ESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGA 369 (416)
Q Consensus 319 ES~aSE~aARm~AM~~AtdNA~eli~~Ltl~yNr~RQa~IT~EI~EIVsGA 369 (416)
-...+|.++|+.-|+.+.++.++..-.|+...++.+-.-+.+++.|...--
T Consensus 215 ~~~~a~~Ga~~nrle~~~~~~~~~~~~l~~~~s~i~d~D~a~a~~~l~~~q 265 (287)
T PRK08073 215 INRTTEVGGTMNTVETFKTILSEQNLALQENRKEIEDVDLAVAISDLAYIN 265 (287)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhcccccHHHHHHHHHHHH
Confidence 356789999999999999999999999999999999999999999987643
No 36
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=21.64 E-value=3.2e+02 Score=26.19 Aligned_cols=47 Identities=17% Similarity=0.210 Sum_probs=32.1
Q ss_pred EEEEEeCCCCCCc-cccHHHHHHHHHHHHHHhhCCCcEEEEEEechhH
Q 014925 128 AIVIITGDRGLCG-GFNKAVIKKAENRMVELKDMGLDCVVISVGKKGN 174 (416)
Q Consensus 128 ~lIVItSDrGLCG-~fNs~Iik~~~~~i~~~~~~g~~~~li~VGkKg~ 174 (416)
.++++|.|=|++| .|....++++.+..+.....|.++.+.+.|.=-.
T Consensus 131 ~vlvMtV~PGfgGq~fi~~~lekI~~l~~~~~~~~~~~~I~vdGGI~~ 178 (220)
T PRK08883 131 LILLMSVNPGFGGQSFIPHTLDKLRAVRKMIDESGRDIRLEIDGGVKV 178 (220)
T ss_pred eEEEEEecCCCCCceecHhHHHHHHHHHHHHHhcCCCeeEEEECCCCH
Confidence 5788999999977 3888887777665443333344566777775444
No 37
>PF15214 PXT1: Peroxisomal testis-specific protein 1
Probab=20.52 E-value=1.3e+02 Score=22.26 Aligned_cols=39 Identities=23% Similarity=0.371 Sum_probs=29.6
Q ss_pred HHhHHHHHHHHHHHHHhhHHHHhccccCCCcccccch-HHHHHHHhhcc
Q 014925 351 NQERQAKITGELLEIVAGAEALTQIRLRVPSFHGHVS-FLHIIWLNHCL 398 (416)
Q Consensus 351 Nr~RQa~IT~EI~EIVsGAeAL~~~~~~~~~~~~~~~-~~~~~~~~~~~ 398 (416)
+|.=|+..-||--+.+.+.-++ +|+-+- -++..|-||++
T Consensus 12 hR~vqE~lqqd~~d~la~fV~~---------~f~r~~vlLrFfwnnhll 51 (51)
T PF15214_consen 12 HRMVQEDLQQDGRDALAHFVLF---------FFRRVQVLLRFFWNNHLL 51 (51)
T ss_pred HHHHHHHHHHHhHHHHHHHHHH---------HHhhhhhhhhhhhhcccC
Confidence 6778899889988888887665 444333 68889999974
No 38
>PRK12803 flagellin; Provisional
Probab=20.22 E-value=3.4e+02 Score=27.88 Aligned_cols=50 Identities=16% Similarity=0.236 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 014925 318 QESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVA 367 (416)
Q Consensus 318 lES~aSE~aARm~AM~~AtdNA~eli~~Ltl~yNr~RQa~IT~EI~EIVs 367 (416)
+.+..++..||.+-++.+.+|.+.....|+..+-|.|-+-+.+|+.+...
T Consensus 259 v~~~Ra~lGA~qNRle~~~~~l~~~~~nl~~a~S~i~D~D~A~e~~~~~~ 308 (335)
T PRK12803 259 ISDQRANLGAFQNRLESIKASTEYAIENLKASYAQIKDATMTDEVVASTT 308 (335)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Confidence 34778999999999999999999999999999999999999999999865
No 39
>PF14335 DUF4391: Domain of unknown function (DUF4391)
Probab=20.13 E-value=4.7e+02 Score=24.84 Aligned_cols=46 Identities=17% Similarity=0.225 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 014925 321 FASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIV 366 (416)
Q Consensus 321 ~aSE~aARm~AM~~AtdNA~eli~~Ltl~yNr~RQa~IT~EI~EIV 366 (416)
-..|.-+|+..++.-.+.+..+-.++..+-+=.||-+|-.||-++-
T Consensus 173 ~~~~~~~~~~~i~~L~kei~~L~~~~~kEkq~nrkveln~elk~l~ 218 (221)
T PF14335_consen 173 SLWERIERLEQIEKLEKEIAKLKKKIKKEKQFNRKVELNTELKKLK 218 (221)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 6788999999999999999999999999999999999999998763
Done!