Query 014929
Match_columns 415
No_of_seqs 249 out of 1509
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 01:27:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014929.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014929hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2662 Magnesium transporters 100.0 6.1E-85 1.3E-89 646.1 37.8 384 2-415 15-414 (414)
2 COG0598 CorA Mg2+ and Co2+ tra 100.0 8.4E-33 1.8E-37 276.3 29.8 275 47-413 32-322 (322)
3 TIGR00383 corA magnesium Mg(2+ 100.0 1.5E-32 3.3E-37 273.1 30.9 280 44-413 23-318 (318)
4 PRK09546 zntB zinc transporter 100.0 1.3E-30 2.9E-35 260.5 32.1 270 46-413 35-324 (324)
5 PRK11085 magnesium/nickel/coba 100.0 6.4E-28 1.4E-32 239.8 27.8 269 47-413 25-316 (316)
6 PF01544 CorA: CorA-like Mg2+ 100.0 4.6E-27 1E-31 228.9 27.6 272 46-409 2-292 (292)
7 PRK11085 magnesium/nickel/coba 96.4 0.85 1.9E-05 46.0 21.4 92 314-412 216-312 (316)
8 PRK09546 zntB zinc transporter 95.6 0.99 2.2E-05 45.3 18.1 35 341-378 261-297 (324)
9 COG0598 CorA Mg2+ and Co2+ tra 94.8 3.1 6.7E-05 41.8 18.7 103 302-412 213-318 (322)
10 TIGR00383 corA magnesium Mg(2+ 94.6 3 6.4E-05 41.5 17.8 63 307-372 214-277 (318)
11 PF10267 Tmemb_cc2: Predicted 90.3 25 0.00055 36.6 20.0 58 312-369 298-364 (395)
12 PF01544 CorA: CorA-like Mg2+ 89.2 11 0.00025 36.2 14.0 80 310-396 204-286 (292)
13 PF07332 DUF1469: Protein of u 84.9 7.1 0.00015 33.2 8.8 78 319-397 7-87 (121)
14 PRK15348 type III secretion sy 84.3 1.1 2.3E-05 43.7 3.7 43 368-410 200-248 (249)
15 PF02656 DUF202: Domain of unk 77.9 16 0.00036 28.1 7.8 15 398-412 59-73 (73)
16 PF03904 DUF334: Domain of unk 76.7 74 0.0016 30.6 16.3 15 396-410 213-227 (230)
17 PF06210 DUF1003: Protein of u 67.1 13 0.00028 31.6 5.2 53 355-407 3-55 (108)
18 PF10805 DUF2730: Protein of u 64.9 41 0.00088 28.3 7.8 58 165-222 40-101 (106)
19 KOG3091 Nuclear pore complex, 61.8 2.3E+02 0.0049 30.5 14.0 29 191-219 374-402 (508)
20 PF11026 DUF2721: Protein of u 61.3 1.1E+02 0.0024 26.6 12.2 70 306-375 15-94 (130)
21 PF10272 Tmpp129: Putative tra 60.9 18 0.00038 37.3 5.7 44 332-375 18-61 (358)
22 COG5130 YIP3 Prenylated rab ac 59.5 12 0.00025 33.4 3.6 20 355-374 80-99 (169)
23 PF10856 DUF2678: Protein of u 59.0 9.1 0.0002 32.9 2.8 19 352-370 33-51 (118)
24 PF11712 Vma12: Endoplasmic re 58.6 23 0.00049 31.3 5.5 19 355-373 82-101 (142)
25 TIGR02230 ATPase_gene1 F0F1-AT 58.3 23 0.00051 29.7 5.1 25 353-377 45-69 (100)
26 PF05478 Prominin: Prominin; 58.2 3.3E+02 0.0072 31.1 19.4 17 363-379 433-449 (806)
27 KOG3684 Ca2+-activated K+ chan 56.7 2.7E+02 0.0059 29.7 13.9 42 188-229 384-425 (489)
28 PF07798 DUF1640: Protein of u 54.1 1.7E+02 0.0038 26.6 17.8 31 335-370 143-173 (177)
29 PRK14584 hmsS hemin storage sy 53.6 53 0.0011 29.8 6.9 27 349-376 17-43 (153)
30 PF11286 DUF3087: Protein of u 53.0 39 0.00084 31.0 6.0 9 363-371 34-42 (165)
31 COG3462 Predicted membrane pro 52.0 1.1E+02 0.0023 26.3 7.9 29 341-371 3-31 (117)
32 TIGR02132 phaR_Bmeg polyhydrox 51.6 82 0.0018 29.2 7.8 55 162-221 81-135 (189)
33 PF02060 ISK_Channel: Slow vol 51.0 20 0.00043 31.4 3.6 48 364-411 15-70 (129)
34 PF11368 DUF3169: Protein of u 50.9 55 0.0012 31.6 7.2 7 343-349 5-11 (248)
35 PF10754 DUF2569: Protein of u 49.6 42 0.00092 29.8 5.7 13 402-414 73-85 (149)
36 PF01442 Apolipoprotein: Apoli 49.3 1.9E+02 0.0041 25.6 12.4 113 158-346 3-116 (202)
37 PF01102 Glycophorin_A: Glycop 48.9 32 0.0007 29.9 4.6 20 381-400 63-82 (122)
38 PF04611 AalphaY_MDB: Mating t 47.5 1.2E+02 0.0026 26.8 7.8 77 119-211 41-117 (147)
39 PF01618 MotA_ExbB: MotA/TolQ/ 46.8 1.7E+02 0.0036 25.5 9.0 18 357-374 69-86 (139)
40 PF06127 DUF962: Protein of un 45.5 83 0.0018 25.8 6.5 19 330-348 3-21 (95)
41 KOG1853 LIS1-interacting prote 45.0 3.2E+02 0.0069 27.0 14.9 74 153-226 45-124 (333)
42 TIGR01167 LPXTG_anchor LPXTG-m 44.9 31 0.00067 22.4 3.1 10 402-411 24-33 (34)
43 PRK13182 racA polar chromosome 44.8 1E+02 0.0022 28.5 7.5 59 161-219 86-144 (175)
44 TIGR01834 PHA_synth_III_E poly 44.7 1.7E+02 0.0037 29.7 9.7 51 171-221 267-317 (320)
45 PRK11644 sensory histidine kin 44.4 80 0.0017 33.6 7.8 63 344-415 104-167 (495)
46 PHA03231 glycoprotein BALF4; P 43.2 88 0.0019 35.7 8.0 18 314-331 632-649 (829)
47 PF03408 Foamy_virus_ENV: Foam 42.8 19 0.00042 40.4 2.8 95 314-414 862-975 (981)
48 PF09583 Phageshock_PspG: Phag 42.4 22 0.00048 27.4 2.3 18 361-378 32-49 (65)
49 PTZ00382 Variant-specific surf 41.8 5.5 0.00012 33.1 -1.1 11 401-411 85-95 (96)
50 KOG3208 SNARE protein GS28 [In 40.7 3.4E+02 0.0074 26.1 15.2 61 162-222 53-118 (231)
51 PF06196 DUF997: Protein of un 39.6 2E+02 0.0043 23.1 8.0 24 354-377 10-33 (80)
52 PF04226 Transgly_assoc: Trans 39.5 1E+02 0.0022 22.2 5.3 15 358-372 6-20 (48)
53 PF12263 DUF3611: Protein of u 39.4 96 0.0021 28.9 6.5 54 350-410 25-80 (183)
54 PF04136 Sec34: Sec34-like fam 37.5 3.1E+02 0.0067 24.7 10.7 36 192-227 27-62 (157)
55 PF14654 Epiglycanin_C: Mucin, 37.5 59 0.0013 27.2 4.2 31 379-409 14-44 (106)
56 PF04341 DUF485: Protein of un 37.0 2.3E+02 0.0049 23.0 8.4 24 383-410 54-77 (91)
57 PRK09459 pspG phage shock prot 36.9 29 0.00062 27.6 2.2 19 360-378 31-49 (76)
58 PF11669 WBP-1: WW domain-bind 36.7 37 0.00079 28.5 3.0 11 383-393 22-32 (102)
59 PF06570 DUF1129: Protein of u 36.7 75 0.0016 29.7 5.5 9 402-410 192-200 (206)
60 KOG4643 Uncharacterized coiled 36.6 5.5E+02 0.012 30.2 12.8 78 143-233 159-237 (1195)
61 PF06570 DUF1129: Protein of u 36.4 1.2E+02 0.0026 28.4 6.8 14 358-371 88-101 (206)
62 PF04102 SlyX: SlyX; InterPro 35.4 83 0.0018 24.3 4.6 49 165-219 2-51 (69)
63 TIGR03358 VI_chp_5 type VI sec 34.9 80 0.0017 28.8 5.1 39 191-229 111-152 (159)
64 PF10577 UPF0560: Uncharacteri 34.8 38 0.00083 38.2 3.6 27 387-413 277-303 (807)
65 PF06103 DUF948: Bacterial pro 34.8 2.4E+02 0.0051 22.5 7.8 20 164-183 30-49 (90)
66 PF10224 DUF2205: Predicted co 34.6 95 0.0021 25.0 4.9 43 191-234 21-63 (80)
67 PF04156 IncA: IncA protein; 34.5 57 0.0012 29.8 4.3 17 355-371 9-25 (191)
68 PF11970 Git3_C: G protein-cou 33.9 1.3E+02 0.0029 23.8 5.7 54 356-412 20-74 (76)
69 PF10112 Halogen_Hydrol: 5-bro 33.7 86 0.0019 29.0 5.4 19 355-373 12-30 (199)
70 TIGR00833 actII Transport prot 32.9 1.5E+02 0.0033 34.2 8.2 37 355-391 278-314 (910)
71 PF06645 SPC12: Microsomal sig 32.7 33 0.00072 27.2 2.0 23 355-377 15-37 (76)
72 COG3696 Putative silver efflux 32.5 34 0.00074 39.2 2.8 51 356-410 890-942 (1027)
73 PF13273 DUF4064: Protein of u 31.8 89 0.0019 25.5 4.6 14 350-363 5-18 (100)
74 PF02439 Adeno_E3_CR2: Adenovi 31.4 97 0.0021 21.5 3.8 9 403-411 24-32 (38)
75 PF07889 DUF1664: Protein of u 31.3 2.7E+02 0.0058 24.4 7.6 28 192-219 88-115 (126)
76 PF05591 DUF770: Protein of un 31.3 81 0.0018 28.6 4.5 39 191-229 110-151 (157)
77 PF10003 DUF2244: Integral mem 31.0 1.6E+02 0.0034 25.9 6.3 28 384-411 34-61 (140)
78 PF08173 YbgT_YccB: Membrane b 30.8 92 0.002 20.1 3.4 18 384-401 3-20 (28)
79 PRK02793 phi X174 lysis protei 30.5 1.5E+02 0.0032 23.3 5.3 50 164-219 5-55 (72)
80 COG5570 Uncharacterized small 30.1 1.4E+02 0.003 22.2 4.6 48 160-212 5-52 (57)
81 PF05377 FlaC_arch: Flagella a 29.8 1.4E+02 0.0031 22.4 4.8 28 203-230 17-44 (55)
82 PF05377 FlaC_arch: Flagella a 29.7 1.2E+02 0.0026 22.7 4.4 25 197-221 18-42 (55)
83 PF13829 DUF4191: Domain of un 29.6 1.6E+02 0.0036 28.3 6.5 15 383-397 52-66 (224)
84 PF07106 TBPIP: Tat binding pr 29.5 4.2E+02 0.009 23.8 9.7 53 162-214 81-137 (169)
85 PF05478 Prominin: Prominin; 29.3 9E+02 0.02 27.6 18.9 14 172-185 230-243 (806)
86 TIGR00833 actII Transport prot 28.7 60 0.0013 37.4 4.1 58 357-414 850-910 (910)
87 PF14584 DUF4446: Protein of u 28.7 1.3E+02 0.0028 27.1 5.4 40 299-338 40-79 (151)
88 PF00335 Tetraspannin: Tetrasp 28.0 20 0.00043 32.2 0.0 19 353-371 9-27 (221)
89 PTZ00370 STEVOR; Provisional 27.5 71 0.0015 31.8 3.7 15 211-225 110-124 (296)
90 TIGR01478 STEVOR variant surfa 27.3 73 0.0016 31.7 3.7 14 212-225 112-125 (295)
91 TIGR02975 phageshock_pspG phag 27.1 62 0.0013 24.9 2.5 19 360-378 30-48 (64)
92 PF05360 YiaAB: yiaA/B two hel 27.1 1.4E+02 0.0031 21.9 4.4 41 353-397 4-44 (53)
93 PF01769 MgtE: Divalent cation 27.1 4E+02 0.0087 22.8 9.0 11 402-412 99-109 (135)
94 PF14015 DUF4231: Protein of u 26.7 3.5E+02 0.0077 22.0 8.7 7 366-372 38-44 (112)
95 PF11674 DUF3270: Protein of u 26.5 2.4E+02 0.0052 23.3 6.1 45 342-394 35-79 (90)
96 KOG4343 bZIP transcription fac 26.5 1.4E+02 0.0031 32.3 5.9 78 296-379 300-383 (655)
97 KOG2927 Membrane component of 26.4 1.2E+02 0.0027 31.0 5.3 59 355-413 195-258 (372)
98 cd07912 Tweety_N N-terminal do 26.4 6E+02 0.013 26.8 10.6 27 384-413 211-237 (418)
99 PF04799 Fzo_mitofusin: fzo-li 26.2 4.1E+02 0.0089 24.5 8.2 55 149-219 109-163 (171)
100 PRK04325 hypothetical protein; 26.1 2.2E+02 0.0048 22.3 5.7 50 164-219 6-56 (74)
101 PF13042 DUF3902: Protein of u 25.9 2.3E+02 0.0049 25.7 6.2 74 333-410 51-125 (161)
102 PF02388 FemAB: FemAB family; 25.5 3.6E+02 0.0078 28.0 8.8 58 159-218 241-298 (406)
103 PF09990 DUF2231: Predicted me 25.1 2E+02 0.0044 23.5 5.7 23 353-375 8-30 (104)
104 TIGR02106 cyd_oper_ybgT cyd op 25.0 1.4E+02 0.0029 19.7 3.4 16 384-399 3-18 (30)
105 PF07086 DUF1352: Protein of u 24.8 5.8E+02 0.012 23.9 9.4 36 336-372 87-122 (186)
106 KOG2678 Predicted membrane pro 24.7 95 0.0021 29.9 3.9 25 384-408 214-238 (244)
107 PF12805 FUSC-like: FUSC-like 24.6 1.6E+02 0.0034 28.9 5.7 13 364-376 54-66 (284)
108 COG3162 Predicted membrane pro 24.6 4.3E+02 0.0093 22.3 7.7 62 341-409 20-84 (102)
109 PF04504 DUF573: Protein of un 24.5 1.2E+02 0.0027 25.1 4.1 26 183-208 45-71 (98)
110 PRK13021 secF preprotein trans 24.1 2.2E+02 0.0048 28.5 6.7 6 53-58 37-42 (297)
111 PRK15326 type III secretion sy 24.1 3.9E+02 0.0084 21.6 9.1 50 157-206 8-58 (80)
112 PF14127 DUF4294: Domain of un 24.1 5.5E+02 0.012 23.4 10.0 13 364-376 125-137 (157)
113 PF08317 Spc7: Spc7 kinetochor 24.0 7.4E+02 0.016 24.8 16.3 51 299-349 231-281 (325)
114 PF10168 Nup88: Nuclear pore c 24.0 1.1E+03 0.024 26.7 13.2 37 190-226 576-612 (717)
115 PF05597 Phasin: Poly(hydroxya 23.8 5E+02 0.011 22.8 8.3 65 155-219 60-128 (132)
116 PRK00846 hypothetical protein; 23.4 2.7E+02 0.0058 22.3 5.7 15 164-178 10-24 (77)
117 COG1196 Smc Chromosome segrega 23.3 1.3E+03 0.029 27.5 17.1 6 366-371 514-519 (1163)
118 COG0004 AmtB Ammonia permease 23.2 2E+02 0.0044 30.1 6.3 50 363-412 205-255 (409)
119 TIGR01837 PHA_granule_1 poly(h 22.9 3.9E+02 0.0086 22.8 7.1 22 192-213 95-116 (118)
120 KOG3176 Predicted alpha-helica 22.8 6.9E+02 0.015 24.0 10.9 90 127-224 25-114 (223)
121 PF01031 Dynamin_M: Dynamin ce 22.8 2.6E+02 0.0057 27.4 6.9 92 130-223 171-269 (295)
122 PF11023 DUF2614: Protein of u 22.8 4.8E+02 0.01 22.5 7.3 10 340-349 5-14 (114)
123 COG4062 MtrB Tetrahydromethano 22.6 97 0.0021 26.0 3.1 22 313-334 32-53 (108)
124 PRK04406 hypothetical protein; 22.4 3.9E+02 0.0085 21.1 8.0 52 162-219 6-58 (75)
125 COG3937 Uncharacterized conser 22.2 5E+02 0.011 22.2 7.3 21 195-215 85-105 (108)
126 PRK10517 magnesium-transportin 21.5 3.3E+02 0.0071 31.6 8.2 10 364-373 858-867 (902)
127 PRK14749 hypothetical protein; 21.5 2.4E+02 0.0051 18.5 4.0 23 383-405 2-24 (30)
128 COG3274 Predicted O-acyltransf 21.4 1.5E+02 0.0032 30.2 4.7 47 340-387 194-241 (332)
129 PF04011 LemA: LemA family; I 21.4 6.2E+02 0.014 23.0 16.5 47 316-374 122-168 (186)
130 PF10191 COG7: Golgi complex c 21.3 1.2E+03 0.027 26.4 15.5 67 154-221 32-98 (766)
131 PRK02119 hypothetical protein; 21.2 4.1E+02 0.0089 20.8 7.8 50 164-219 6-56 (73)
132 PF13994 PgaD: PgaD-like prote 21.2 5.6E+02 0.012 22.3 7.9 13 364-376 37-49 (138)
133 COG4420 Predicted membrane pro 20.9 4.8E+02 0.01 24.5 7.6 39 191-229 139-177 (191)
134 PF01957 NfeD: NfeD-like C-ter 20.8 32 0.0007 29.5 -0.0 18 360-377 25-42 (144)
135 PF14235 DUF4337: Domain of un 20.8 6.3E+02 0.014 22.8 11.6 35 303-337 71-105 (157)
136 PF06667 PspB: Phage shock pro 20.6 2.3E+02 0.005 22.5 4.8 35 186-224 35-69 (75)
137 PF03176 MMPL: MMPL family; I 20.5 1.3E+02 0.0029 29.7 4.3 32 358-389 251-282 (333)
138 PRK02935 hypothetical protein; 20.4 5.4E+02 0.012 21.9 7.9 9 340-348 6-14 (110)
139 PF11821 DUF3341: Protein of u 20.3 5.2E+02 0.011 23.8 7.8 37 370-406 79-117 (173)
140 TIGR02976 phageshock_pspB phag 20.2 2.4E+02 0.0052 22.4 4.8 34 187-224 36-69 (75)
141 COG4420 Predicted membrane pro 20.2 1.8E+02 0.004 27.2 4.7 35 353-387 55-91 (191)
142 KOG2751 Beclin-like protein [S 20.1 1.1E+03 0.023 25.2 13.3 72 154-228 137-211 (447)
No 1
>KOG2662 consensus Magnesium transporters: CorA family [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.1e-85 Score=646.05 Aligned_cols=384 Identities=51% Similarity=0.740 Sum_probs=347.0
Q ss_pred CCCCCCCCCCCCCCCCcccCCCc-cccCCCCCCCC---CCCcccccCCCccEEEEEcCCCCeeEEEechhhhhhhcCCCc
Q 014929 2 GESRGPFLRAFIPGSTSSDDTGR-LNLDARGNRGS---HSVGTKNRGHASRSWIKIDQDGNFEILELDKTTIMRHCSLPA 77 (415)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~Wi~id~~g~~~~~e~~k~~l~~~~~L~~ 77 (415)
..++.|+.++.+|-...+.++++ .|.....++|. ...+.++++.++++|++||.+|+++..+++|+.|++++||+|
T Consensus 15 ~l~~~~~~~s~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sw~~~D~tGn~~~~e~dK~~i~~r~~L~a 94 (414)
T KOG2662|consen 15 ALRLTPFGRSSLPFLRSALKTGSPSNSSPPILGGGKIDSSSVSKKSGSGSRSWTRFDATGNSTVLEVDKYTIMKRVGLPA 94 (414)
T ss_pred ccccCCCCccccchhhhhccCCCCCCCCCCCCCcccccCcccccccCCcceEEEEEcCCCCeeeccccHHHHHHHcCCCh
Confidence 35678899999998877777776 44444555555 566777889999999999999999999999999999999999
Q ss_pred cchhccCCCCCcCceEeeecCeeEeeecceEEEEecCceEEeccCCcchhhHHHHHHHHhccCC----------C-CCCC
Q 014929 78 RDLRLLDPLFIYPSTILGREKAIVVSLVQIRCIITADEVILMNSLDGCVVQYYLELCKRLQTNK----------D-QADD 146 (415)
Q Consensus 78 RDLr~Ld~~~~~~~~Il~Re~aivvnle~ir~IIt~d~vllf~~~~~~~~~~~~~L~~rL~~~~----------~-~~~~ 146 (415)
||||++||.++||++|++||+|||+|+|+||||||+|+|++|++.++ +.++.+++++|+.... + ..+.
T Consensus 95 RDLR~ldp~~~~~ssIl~RE~aIVlNLe~IKAIItaeeVll~d~~~~-v~~~~~el~~~l~~~~~~~~~q~s~~~~~~~~ 173 (414)
T KOG2662|consen 95 RDLRKLDPSLSYPSSILGRENAIVLNLEHIKAIITADEVLLLDSLDP-VIPYNEELQRRLPVELESRGNQLSSDGGSKDE 173 (414)
T ss_pred hhhhhccccccCccccccccceEEeehhhhheeeehhheeEeccccc-cchHHHHHHHHhcccccccccccCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999887 8999999999997653 1 2378
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchh
Q 014929 147 LPFEFRALELALELTCMSLDAQVKELGMEIYPVLDELASSISTLNLEHLRRLKGHLLALTQQVQKVHDEIEHLMDDDGDM 226 (415)
Q Consensus 147 LpFE~raLE~iL~~~~~~Le~~~~~Le~~~~~~ld~L~~~~~~~~Le~l~~lK~~L~~l~~~v~~vrd~l~~LlddD~dm 226 (415)
+||||||||+||+.+|+.|++++.+||..++++||+|+.++++.+|++|+.+|++|++|.++|++|||+|++|||||+||
T Consensus 174 lPFEFrALE~aLe~~~s~L~~~~~~Le~~~~~~LdeLt~~is~~nL~~lr~~k~~Lt~l~~rvqkvRDeLe~LLddd~Dm 253 (414)
T KOG2662|consen 174 LPFEFRALEVALEAACSFLDSRLSELETEAYPLLDELTNKISTLNLERLRILKKRLTELTSRVQKVRDELEELLDDDDDM 253 (414)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhhhccCCCCCCCcccccccccccccCCCCCCCCCCcchhh-hhhhhhcccccccCCccccCCCcchhHHHHHH
Q 014929 227 AAMYLTEKKQRLDSSSDGYTQTNISSLDRVVSKSAPVSPVGSISGAQ-KLQRAFSSIVTSKHGSLISSSSNRENVEQLEM 305 (415)
Q Consensus 227 ~~m~Lt~k~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~~~~~~~~~eelE~ 305 (415)
++||||+|+.+.++ +.|+|.+|+.....++ ++.+.++ . ...++++||+||
T Consensus 254 a~mYLT~K~~~~~~-----------------~~~~~~sp~~~~~~~r~~~~~~~s-----------~-~~~~dd~eElEM 304 (414)
T KOG2662|consen 254 AEMYLTRKLAQASS-----------------PESAPTSPTIKAGISRAKSNRASS-----------T-VRGEDDVEELEM 304 (414)
T ss_pred HHHHHhHHhhhccc-----------------cccCCCCccccCCccchhhcccch-----------h-ccccccHHHHHH
Confidence 99999999877542 4688998887774422 2222222 1 112789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCchh
Q 014929 306 LLEAYFVVVDNTLSKLLSLKEYIDDTEDLINIKLGNVQNQLIQFELLLTAATFVATIFAVVTGVFGMNLKASVFDYPSAF 385 (415)
Q Consensus 306 LLe~Y~~~~d~~~~~l~~l~e~i~~~~d~~~~~Ld~~rN~imki~l~LtilTii~~i~t~IaGifGMN~~~~pe~~~~gf 385 (415)
|||+||+|+|.+.+++++++++|++|||+++++||++||++|+++|+||+.|++++++++|||+||||+++..|+++|+|
T Consensus 305 LLEaYf~qiD~~~nk~~~Lre~IddTEd~InI~LDs~RN~LiqleL~Lt~gT~~~s~~~~va~ifGMNl~~~l~~~~~~F 384 (414)
T KOG2662|consen 305 LLEAYFMQIDSTLNKLESLREYIDDTEDIINIQLDSNRNELIQLELLLTIGTFCLSVFSVVAGIFGMNLPSSLEEDHYAF 384 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhccCCChh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 014929 386 HWVLVITGLAGCLLYFSFLFYFKHKKVFPL 415 (415)
Q Consensus 386 ~~v~~~~~~~~~~l~~~~~~~frrk~wl~~ 415 (415)
+|++++++++|+++|++.+.|+|+||++++
T Consensus 385 ~~vv~~~~~~~~~lf~~i~~~~k~krL~~~ 414 (414)
T KOG2662|consen 385 KWVVGITFTLCIVLFVVILGYAKLKRLLGL 414 (414)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence 999999999999999999999999998874
No 2
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.4e-33 Score=276.28 Aligned_cols=275 Identities=17% Similarity=0.197 Sum_probs=219.5
Q ss_pred ccEEEEEcCCCCeeEEEechhhhhhhcCCCccchhcc-CCCCCcCceEeeecCeeE-------------e-eecceEEEE
Q 014929 47 SRSWIKIDQDGNFEILELDKTTIMRHCSLPARDLRLL-DPLFIYPSTILGREKAIV-------------V-SLVQIRCII 111 (415)
Q Consensus 47 ~~~Wi~id~~g~~~~~e~~k~~l~~~~~L~~RDLr~L-d~~~~~~~~Il~Re~aiv-------------v-nle~ir~II 111 (415)
...|+.++..++.+. ..|.+.+|+|+..+..+ |. .+.|++...++... . .++++++|+
T Consensus 32 ~~~Widl~~p~~~e~-----~~l~~~~~l~~~~~ed~~~~--~~r~r~e~~d~~~~i~~~~~~~~~~~~~~~~~~v~~i~ 104 (322)
T COG0598 32 GFVWIDLVEPDDEEL-----EWLAKTFGLHPLALEDLLDA--EQRPKVERYDDYLFIVLRDVNLEEEEDKAETEPVSIIV 104 (322)
T ss_pred CeEEEECCCCCHHHH-----HHHHHhcCCCcchHHHHhCc--ccCCceEeeCCEEEEEEEeeccccccccccceeEEEEE
Confidence 367999998887665 37888999999977754 33 33445555554322 1 378899999
Q ss_pred ecCceEEeccCCcchhhHHHHHHHHhccCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCChhh
Q 014929 112 TADEVILMNSLDGCVVQYYLELCKRLQTNKDQADDLPFEFRALELALELTCMSLDAQVKELGMEIYPVLDELASSISTLN 191 (415)
Q Consensus 112 t~d~vllf~~~~~~~~~~~~~L~~rL~~~~~~~~~LpFE~raLE~iL~~~~~~Le~~~~~Le~~~~~~ld~L~~~~~~~~ 191 (415)
+++.+++++..+ .+.++.++.|+..+.... .-|. .++..+++.....+-..++.++++++.+.+.+..+..+..
T Consensus 105 ~~~~liT~r~~~---~~~~~~vr~r~~~~~~~~-~~~~--~l~~~lld~i~d~~~~~le~i~~~~~~ie~~l~~~~~~~~ 178 (322)
T COG0598 105 GKRRLITIRHRP---LPAFDRVRERLEKGTLLT-RGAD--ELLYALLDAIVDNYFPVLEQIEDELEAIEDQLLASTTNEE 178 (322)
T ss_pred eCCEEEEEecCC---CccHHHHHHHHhcccccc-CCHH--HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcCccHHH
Confidence 999999999854 688899999998752111 1122 2455566666666666677888899999999988888889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhHHhhhhhhhhccCCCCCCCcccccccccccccCCCCCCCCCCcch
Q 014929 192 LEHLRRLKGHLLALTQQVQKVHDEIEHLMDDDGDMAAMYLTEKKQRLDSSSDGYTQTNISSLDRVVSKSAPVSPVGSISG 271 (415)
Q Consensus 192 Le~l~~lK~~L~~l~~~v~~vrd~l~~LlddD~dm~~m~Lt~k~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 271 (415)
+++|..+++.+..+++.+.+.++++..+...+.+.. .
T Consensus 179 l~~l~~l~~~l~~lr~~l~~~~~~l~~l~~~~~~~~----~--------------------------------------- 215 (322)
T COG0598 179 LERLGELRRSLVYLRRALAPLRDVLLRLARRPLDWL----S--------------------------------------- 215 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCcccC----C---------------------------------------
Confidence 999999999999999999999999999998765420 0
Q ss_pred hhhhhhhhcccccccCCccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Q 014929 272 AQKLQRAFSSIVTSKHGSLISSSSNRENVEQLEMLLEAYFVVVDNTLSKLLSLKEYIDDTEDLINIKLGNVQNQLIQFEL 351 (415)
Q Consensus 272 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~eelE~LLe~Y~~~~d~~~~~l~~l~e~i~~~~d~~~~~Ld~~rN~imki~l 351 (415)
++....++.-..++..+.+.++.+++.+..+.|.+...+++++|++||+
T Consensus 216 -----------------------------~~~~~~l~dv~~~~~~~~~~~~~~~~~l~~l~d~~~s~is~~~N~imk~-- 264 (322)
T COG0598 216 -----------------------------EEDREYLRDVLDHLTQLIEMLEALRERLSSLLDAYLSLINNNQNEIMKI-- 264 (322)
T ss_pred -----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 1112223444455677888899999999999999999999999999997
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCCCCCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 014929 352 LLTAATFVATIFAVVTGVFGMNLKASVFDYP-SAFHWVLVITGLAGCLLYFSFLFYFKHKKVF 413 (415)
Q Consensus 352 ~LtilTii~~i~t~IaGifGMN~~~~pe~~~-~gf~~v~~~~~~~~~~l~~~~~~~frrk~wl 413 (415)
||++|++++|+|+|||+|||||++|||.+| ||||+++++|+++|+ ++++|||||||+
T Consensus 265 -LTi~s~iflPpTlIagiyGMNf~~mPel~~~~Gy~~~l~~m~~~~~----~~~~~frrk~Wl 322 (322)
T COG0598 265 -LTIVSTIFLPPTLITGFYGMNFKGMPELDWPYGYPIALILMLLLAL----LLYLYFRRKGWL 322 (322)
T ss_pred -HHHHHHHHHhhHHHHcccccCCCCCcCCCCcccHHHHHHHHHHHHH----HHHHHHHhcCcC
Confidence 999999999999999999999999999988 999999999999988 999999999997
No 3
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=100.00 E-value=1.5e-32 Score=273.11 Aligned_cols=280 Identities=16% Similarity=0.224 Sum_probs=215.9
Q ss_pred CCCccEEEEEcCCCCeeEEEechhhhhhhcCCCccchhcc-CCCCCcCceEeeecCee-------------EeeecceEE
Q 014929 44 GHASRSWIKIDQDGNFEILELDKTTIMRHCSLPARDLRLL-DPLFIYPSTILGREKAI-------------VVSLVQIRC 109 (415)
Q Consensus 44 ~~~~~~Wi~id~~g~~~~~e~~k~~l~~~~~L~~RDLr~L-d~~~~~~~~Il~Re~ai-------------vvnle~ir~ 109 (415)
..++..|+.+.+..+.+.+ ..+.+.+|+|+..+..+ |+ ...|++...++.. -+..+++.+
T Consensus 23 ~~~~~~Widl~~p~~~e~~----~~l~~~~~l~~~~~ed~~~~--~~~~k~e~~~~~~~i~~~~~~~~~~~~~~~~~l~~ 96 (318)
T TIGR00383 23 ELNTVLWIDLIEPTDEETL----AKLGQFFAIHPLALEDILNS--PQRPKVEEDEDHLFIISFFLNEDEDDTFETEQVSF 96 (318)
T ss_pred CCCceEEEEccCCCcHHHH----HHHHHHcCcCcchHHHhhCC--CCCCcEEEECCEEEEEEEeeeccCCCcceeEEEEE
Confidence 4467789998777766622 47889999999877744 43 1122233323222 245688999
Q ss_pred EEecCceEEeccCCcchhhHHHHHHHHhccCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCh
Q 014929 110 IITADEVILMNSLDGCVVQYYLELCKRLQTNKDQADDLPFEFRALELALELTCMSLDAQVKELGMEIYPVLDELASSIST 189 (415)
Q Consensus 110 IIt~d~vllf~~~~~~~~~~~~~L~~rL~~~~~~~~~LpFE~raLE~iL~~~~~~Le~~~~~Le~~~~~~ld~L~~~~~~ 189 (415)
+++.+.++++...+ .+.++.+.+++..+......-|. .+|-.+++.+...+...++++++++..+.+++.++...
T Consensus 97 ~l~~~~liTv~~~~---~~~~~~~~~~~~~~~~~~~~~~~--~ll~~il~~ivd~~~~~l~~l~~~~~~le~~l~~~~~~ 171 (318)
T TIGR00383 97 ILGKNLLFTIHERE---LPAFDSIRERIRTSQKVFEKGAD--YLLYDIFDAIIDSYFPLLENIEDELEELEDEIISGPTS 171 (318)
T ss_pred EEECCEEEEEEcCC---CCcHHHHHHHHHhCchhhhCCHH--HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhcCCCH
Confidence 99999999998754 46778888887664311111232 36777777777777778888899998888888777777
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc-hhHHhhhhhhhhccCCCCCCCcccccccccccccCCCCCCCCCC
Q 014929 190 LNLEHLRRLKGHLLALTQQVQKVHDEIEHLMDDDG-DMAAMYLTEKKQRLDSSSDGYTQTNISSLDRVVSKSAPVSPVGS 268 (415)
Q Consensus 190 ~~Le~l~~lK~~L~~l~~~v~~vrd~l~~LlddD~-dm~~m~Lt~k~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 268 (415)
..+.++..+|+++..+++.+.+.+++++.+.+.+. .. .+
T Consensus 172 ~~l~~l~~l~~~l~~l~~~l~~~~~vl~~l~~~~~~~~----~~------------------------------------ 211 (318)
T TIGR00383 172 TLMDEILSLRTELLALRRSLWPLRDVLNFLLRKTHLPI----QT------------------------------------ 211 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccc----CC------------------------------------
Confidence 88999999999999999999999999999976442 11 00
Q ss_pred cchhhhhhhhhcccccccCCccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Q 014929 269 ISGAQKLQRAFSSIVTSKHGSLISSSSNRENVEQLEMLLEAYFVVVDNTLSKLLSLKEYIDDTEDLINIKLGNVQNQLIQ 348 (415)
Q Consensus 269 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~eelE~LLe~Y~~~~d~~~~~l~~l~e~i~~~~d~~~~~Ld~~rN~imk 348 (415)
++....+.....+++.+.+.++.+++.++.+.|.+...+++++|++||
T Consensus 212 --------------------------------~~~~~~~~dv~~~~~~l~~~~~~~~e~l~~l~d~~~~~~s~~~N~~mk 259 (318)
T TIGR00383 212 --------------------------------EEVREYLRDIYDHILSLLEMIETYRELLSSLMDLYLSLVNNKMNEIMK 259 (318)
T ss_pred --------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011111222333467788999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 014929 349 FELLLTAATFVATIFAVVTGVFGMNLKASVFDYP-SAFHWVLVITGLAGCLLYFSFLFYFKHKKVF 413 (415)
Q Consensus 349 i~l~LtilTii~~i~t~IaGifGMN~~~~pe~~~-~gf~~v~~~~~~~~~~l~~~~~~~frrk~wl 413 (415)
. ||++|++++|+|+|||+|||||++|||.+| |||++++++|+++++ ++++|||||||+
T Consensus 260 ~---LTvvt~IflP~t~IaGiyGMNf~~mP~l~~~~gy~~~l~~m~~i~~----~~~~~fkrk~Wl 318 (318)
T TIGR00383 260 I---LTVVSTIFIPLTFIAGIYGMNFKFMPELNWKYGYPAVLIVMAVIAL----GPLIYFRRKGWL 318 (318)
T ss_pred H---HHHHHHHHHHHHHHHHHHhCCcccCccccchhHHHHHHHHHHHHHH----HHHHHHHHcCCC
Confidence 6 999999999999999999999999999988 999999999999888 899999999997
No 4
>PRK09546 zntB zinc transporter; Reviewed
Probab=100.00 E-value=1.3e-30 Score=260.49 Aligned_cols=270 Identities=15% Similarity=0.104 Sum_probs=199.0
Q ss_pred CccEEEEEcCCCCeeEEEechhhhhhhcCCCccchh-ccCCCCCcCceEeeecCeeEe--------------eecceEEE
Q 014929 46 ASRSWIKIDQDGNFEILELDKTTIMRHCSLPARDLR-LLDPLFIYPSTILGREKAIVV--------------SLVQIRCI 110 (415)
Q Consensus 46 ~~~~Wi~id~~g~~~~~e~~k~~l~~~~~L~~RDLr-~Ld~~~~~~~~Il~Re~aivv--------------nle~ir~I 110 (415)
+...|+.++.....+ . ..|.+ .+.++..+. .+.+ -.+.|++...++.+.+ .+.++.++
T Consensus 35 ~~~~Wi~l~~~~~~e-~----~~L~~-~~~~~~~~~d~l~~-~~~rpk~e~~~~~~~iil~~~~~~~~~~~~~~~~l~~~ 107 (324)
T PRK09546 35 AHPCWLHLDYTHPDS-A----QWLAT-TPLLPDNVRDALAG-ESTRPRVSRLGEGTLITLRCINGNTDERPDQLVAMRVY 107 (324)
T ss_pred CCCEEEEeCCCChhH-H----HHHHh-cCCCCHHHHHHHhC-CCCCCcEEEECCEEEEEEEeccCCCCCChhheEEEEEE
Confidence 456799997644332 1 24444 455555444 2221 1233455555544442 33458999
Q ss_pred EecCceEEeccCCcchhhHHHHHHHHhccCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCChh
Q 014929 111 ITADEVILMNSLDGCVVQYYLELCKRLQTNKDQADDLPFEFRALELALELTCMSLDAQVKELGMEIYPVLDELASSISTL 190 (415)
Q Consensus 111 It~d~vllf~~~~~~~~~~~~~L~~rL~~~~~~~~~LpFE~raLE~iL~~~~~~Le~~~~~Le~~~~~~ld~L~~~~~~~ 190 (415)
+++++++++...+ .+.++++++++..+.+.. -|. .++-.+++.++..+...++.+++.++.+++.+.++.++
T Consensus 108 l~~~~lITv~~~~---~~~~~~~~~~~~~~~~~~--~~~--~ll~~lld~ivd~~~~~l~~i~~~ld~lE~~l~~~~~~- 179 (324)
T PRK09546 108 ITDRLIVSTRHRK---VLALDDVVSDLQEGTGPT--DCG--GWLVDVCDALTDHASEFIEELHDKIIDLEDNLLDQQIP- 179 (324)
T ss_pred EeCCEEEEEecCC---cccHHHHHHHHHhCCCCC--CHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-
Confidence 9999999998754 578888888887653222 132 25667777777777777788888888888877654222
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhHHhhhhhhhhccCCCCCCCcccccccccccccCCCCCCCCCCcc
Q 014929 191 NLEHLRRLKGHLLALTQQVQKVHDEIEHLMDDDGDMAAMYLTEKKQRLDSSSDGYTQTNISSLDRVVSKSAPVSPVGSIS 270 (415)
Q Consensus 191 ~Le~l~~lK~~L~~l~~~v~~vrd~l~~LlddD~dm~~m~Lt~k~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 270 (415)
.+++|..+|+.+..+++.+.|.++++.+|.+.+... +++.
T Consensus 180 ~~~~l~~lrr~l~~lrr~l~p~~~~l~~L~~~~~~~----~~~~------------------------------------ 219 (324)
T PRK09546 180 PRGELALLRKQLIVMRRYMAPQRDVFARLASERLPW----MSDD------------------------------------ 219 (324)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc----cChH------------------------------------
Confidence 468999999999999999999999999998643221 0010
Q ss_pred hhhhhhhhhcccccccCCccccCCCcchhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Q 014929 271 GAQKLQRAFSSIVTSKHGSLISSSSNRENVEQLEMLLEAYFVV----VDNTLSKLLSLKEYIDDTEDLINIKLGNVQNQL 346 (415)
Q Consensus 271 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~eelE~LLe~Y~~~----~d~~~~~l~~l~e~i~~~~d~~~~~Ld~~rN~i 346 (415)
...||+| +..+.+.++.+++..+.+.+.+...+++++|++
T Consensus 220 ------------------------------------~~~~l~Dv~d~~~~~~~~l~~~~~~~~~l~d~~~s~~s~~~N~~ 263 (324)
T PRK09546 220 ------------------------------------DRRRMQDIADRLGRGLDDLDACIARTAVLADEIASVMAEAMNRR 263 (324)
T ss_pred ------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1235555 345566777777888889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 014929 347 IQFELLLTAATFVATIFAVVTGVFGMNLKASVFDYP-SAFHWVLVITGLAGCLLYFSFLFYFKHKKVF 413 (415)
Q Consensus 347 mki~l~LtilTii~~i~t~IaGifGMN~~~~pe~~~-~gf~~v~~~~~~~~~~l~~~~~~~frrk~wl 413 (415)
||+ ||++|+++.|+|||||+|||||++|||.+| ||||+++++|+++++ ++++||||||||
T Consensus 264 m~~---Ltilt~IflPlT~IaGiyGMNf~~mPel~~~~gy~~~l~im~~i~~----~~~~~fkrk~Wl 324 (324)
T PRK09546 264 TYT---MSLMAMVFLPTTFLTGLFGVNLGGIPGGGWPFGFSIFCLLLVVLIG----GVAWWLKRSKWL 324 (324)
T ss_pred HHH---HHHHHHHHHHHHHHHhhhccccCCCCCcCCcchHHHHHHHHHHHHH----HHHHHHHhcccC
Confidence 997 999999999999999999999999999988 999999999998888 899999999997
No 5
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=99.96 E-value=6.4e-28 Score=239.80 Aligned_cols=269 Identities=13% Similarity=0.135 Sum_probs=190.7
Q ss_pred ccEEEEEcCCCCeeEEEechhhhhhhcCCC---ccchhccCCCCCcCceEeeecCeeE-------------eeecceEEE
Q 014929 47 SRSWIKIDQDGNFEILELDKTTIMRHCSLP---ARDLRLLDPLFIYPSTILGREKAIV-------------VSLVQIRCI 110 (415)
Q Consensus 47 ~~~Wi~id~~g~~~~~e~~k~~l~~~~~L~---~RDLr~Ld~~~~~~~~Il~Re~aiv-------------vnle~ir~I 110 (415)
...|+.+......+. ..+.+.+|++ ..|+..+... |.+...++++. ...+++.+|
T Consensus 25 ~~vWiDl~~Pt~eE~-----~~v~~~~gl~~pt~~~~eeIe~s----sR~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fi 95 (316)
T PRK11085 25 DAVWIDLVEPDDDER-----LRVQSELGQSLATRPELEDIEAS----ARFFEDEDGLHIHSFFFFEDAEDHAGNSTVAFT 95 (316)
T ss_pred CCEEEEcCCCCHHHH-----HHHHHHhCCCCCChhhHHHHhhC----ceEEEECCeEEEEEEEEecCCCCCccceeEEEE
Confidence 578999976655443 4677889999 6677766542 22333333222 245778999
Q ss_pred EecCceEEeccCCcchhhHHHHHHHHhccCCCCCCCccc--HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCC
Q 014929 111 ITADEVILMNSLDGCVVQYYLELCKRLQTNKDQADDLPF--EFRALELALELTCMSLDAQVKELGMEIYPVLDELASSIS 188 (415)
Q Consensus 111 It~d~vllf~~~~~~~~~~~~~L~~rL~~~~~~~~~LpF--E~raLE~iL~~~~~~Le~~~~~Le~~~~~~ld~L~~~~~ 188 (415)
++.+.++++...+ .+.|..+++|+..+.... .-|+ -+.+||+++|.+...+| .++..++.+..++..+..
T Consensus 96 l~~~~LvTvr~~~---~~~f~~~~~r~~~~~~~~-~~~~~vl~~Lld~iVd~~ad~lE----~~~~~ld~ls~~if~~~~ 167 (316)
T PRK11085 96 IRDGRLFTLRERE---LPAFRLYRMRARSQTLVD-GNAYELLLDLFETKIEQLADEIE----NIYSDLEKLSRVIMEGHQ 167 (316)
T ss_pred EECCEEEEEecCC---cchHHHHHHHHHhCCccc-CCHHHHHHHHHHHHHHHhHHHHH----HHHHHHHHHHHHhccCCC
Confidence 9999999999866 467888888887653201 1222 22445555555555444 444444444444443222
Q ss_pred ----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhHHhhhhhhhhccCCCCCCCcccccccccccccCCCCCC
Q 014929 189 ----TLNLEHLRRLKGHLLALTQQVQKVHDEIEHLMDDDGDMAAMYLTEKKQRLDSSSDGYTQTNISSLDRVVSKSAPVS 264 (415)
Q Consensus 189 ----~~~Le~l~~lK~~L~~l~~~v~~vrd~l~~LlddD~dm~~m~Lt~k~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 264 (415)
...+++|.++++.+..++..+.++++++..+.+.. ..
T Consensus 168 ~~~~~~~l~~i~~l~~~~~~~r~~l~~~~r~l~~l~~~~-~~-------------------------------------- 208 (316)
T PRK11085 168 GDEYDEALSTLAELEDIGWKVRLCLMDTQRALNFLVRKA-RL-------------------------------------- 208 (316)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cC--------------------------------------
Confidence 23345566666666666666666666666665310 00
Q ss_pred CCCCcchhhhhhhhhcccccccCCccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 014929 265 PVGSISGAQKLQRAFSSIVTSKHGSLISSSSNRENVEQLEMLLEAYFVVVDNTLSKLLSLKEYIDDTEDLINIKLGNVQN 344 (415)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~eelE~LLe~Y~~~~d~~~~~l~~l~e~i~~~~d~~~~~Ld~~rN 344 (415)
..+..+. +..+++|++.+.+.++.+++.+..+.|.+...+++++|
T Consensus 209 ----------------------------------~~~~~~~-~~~~~~Di~~l~~~~~~~~~~~~~l~d~~~~~i~~~~N 253 (316)
T PRK11085 209 ----------------------------------PGGQLEQ-AREILRDIESLLPHNESLFQKVNFLMQAAMGFINIEQN 253 (316)
T ss_pred ----------------------------------ChhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 0000011 35799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 014929 345 QLIQFELLLTAATFVATIFAVVTGVFGMNLKASVFDYP-SAFHWVLVITGLAGCLLYFSFLFYFKHKKVF 413 (415)
Q Consensus 345 ~imki~l~LtilTii~~i~t~IaGifGMN~~~~pe~~~-~gf~~v~~~~~~~~~~l~~~~~~~frrk~wl 413 (415)
++||+ ||++|++++|+|+|||+|||||++||+.+| ||||+++++|+++++ ++++|||||||+
T Consensus 254 ~~mk~---lTv~s~if~pptliagiyGMNf~~mP~~~~~~g~~~~l~~~~~~~~----~~~~~f~rk~Wl 316 (316)
T PRK11085 254 RIIKI---FSVVSVVFLPPTLVASSYGMNFEFMPELKWSFGYPGAIILMILAGL----APYLYFKRKNWL 316 (316)
T ss_pred HHHHH---HHHHHHHHHHHHHHHhhcccccCCCCCCCCcHHHHHHHHHHHHHHH----HHHHHHHHcccC
Confidence 99997 999999999999999999999999999988 999999999998887 899999999997
No 6
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=99.96 E-value=4.6e-27 Score=228.92 Aligned_cols=272 Identities=22% Similarity=0.282 Sum_probs=206.5
Q ss_pred CccEEEEEcCCCCeeEEEechhhhhhhcCCCccchhc-cCCCCCcCceEeeecCeeEe--------------eecceEEE
Q 014929 46 ASRSWIKIDQDGNFEILELDKTTIMRHCSLPARDLRL-LDPLFIYPSTILGREKAIVV--------------SLVQIRCI 110 (415)
Q Consensus 46 ~~~~Wi~id~~g~~~~~e~~k~~l~~~~~L~~RDLr~-Ld~~~~~~~~Il~Re~aivv--------------nle~ir~I 110 (415)
+...|+.+.+..+.+. ..|.+++|+|+..+.. +++ ..++++...++++.+ ...++.++
T Consensus 2 ~~~~Wi~~~~~~~~~~-----~~l~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~ 74 (292)
T PF01544_consen 2 DGFVWIDLSGPDDEEL-----EWLAEEFGLHPLTIEDALDP--EERPRIEVFDDYLFIVLRAPEYEEEDDIDEESPLSFI 74 (292)
T ss_dssp SS-EEEEEETTTCHHH-----HHHHHTTTS-HHHHHHHCCT--SSSSEEEEETTEEEEEEEEEEESTTCCECCEEEEEEE
T ss_pred CccEEEEEeCCCHHHH-----HHHHHHhCcCHhHHHHHhCC--CcCCEEEEECCeEEEEEEEcchhhcccccccceEEEE
Confidence 4578999998887743 4788999999998773 354 334556666655552 12257999
Q ss_pred EecCceEEeccCCcchhhHHHHHHHHhccCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCChh
Q 014929 111 ITADEVILMNSLDGCVVQYYLELCKRLQTNKDQADDLPFEFRALELALELTCMSLDAQVKELGMEIYPVLDELASSISTL 190 (415)
Q Consensus 111 It~d~vllf~~~~~~~~~~~~~L~~rL~~~~~~~~~LpFE~raLE~iL~~~~~~Le~~~~~Le~~~~~~ld~L~~~~~~~ 190 (415)
++.+.+++++..+ .++++++.+++... .....-|+ .++..+++.++..+...++.+++.+..+.+.+.+.....
T Consensus 75 ~~~~~lit~~~~~---~~~~~~~~~~~~~~-~~~~~~~~--~ll~~il~~~~~~~~~~l~~l~~~l~~le~~~~~~~~~~ 148 (292)
T PF01544_consen 75 LGDNFLITVHRDP---LPFIDELRERLESR-NERPSSPE--DLLYAILDEIVDDYFEVLEELEDELDELEDELDDRPSNE 148 (292)
T ss_dssp EETTEEEEEESSS---SHCHHHHHHHHHST-TCSCSSHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHTTTHH
T ss_pred EecceEEEEECCC---ChHHHHHHHHhhcc-CCCCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchh
Confidence 9999999999865 57788888888721 12222344 588899999999999999999999999999997777888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcchhHHhhhhhhhhccCCCCCCCcccccccccccccCCCCCCCCCCc
Q 014929 191 NLEHLRRLKGHLLALTQQVQKVHDEIEHLMD-DDGDMAAMYLTEKKQRLDSSSDGYTQTNISSLDRVVSKSAPVSPVGSI 269 (415)
Q Consensus 191 ~Le~l~~lK~~L~~l~~~v~~vrd~l~~Lld-dD~dm~~m~Lt~k~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 269 (415)
.+.++..+|+.+..+++.+.+.++++.++++ ++....
T Consensus 149 ~~~~l~~l~~~l~~l~~~l~~~~~~l~~~~~~~~~~~~------------------------------------------ 186 (292)
T PF01544_consen 149 LLRELFDLRRELSRLRRSLSPLREVLQRLLRRDDSPFI------------------------------------------ 186 (292)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSTTS------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhhhh------------------------------------------
Confidence 8999999999999999999999999998877 221110
Q ss_pred chhhhhhhhhcccccccCCccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Q 014929 270 SGAQKLQRAFSSIVTSKHGSLISSSSNRENVEQLEMLLEAYFVVVDNTLSKLLSLKEYIDDTEDLINIKLGNVQNQLIQF 349 (415)
Q Consensus 270 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~eelE~LLe~Y~~~~d~~~~~l~~l~e~i~~~~d~~~~~Ld~~rN~imki 349 (415)
.++....++....++..+.+.++.+++.++++.+.+...++.++|++|+.
T Consensus 187 ------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~n~~m~~ 236 (292)
T PF01544_consen 187 ------------------------------SDEDKEYLRDLLDRIERLLERAESLRERLESLQDLYQSKLSNRQNRVMKV 236 (292)
T ss_dssp ------------------------------HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred ------------------------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00111225566677888999999999999999999999999999999996
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCC-chhHHH--HHHHHHHHHHHHHHHHHHHHh
Q 014929 350 ELLLTAATFVATIFAVVTGVFGMNLKASVFDYP-SAFHWV--LVITGLAGCLLYFSFLFYFKH 409 (415)
Q Consensus 350 ~l~LtilTii~~i~t~IaGifGMN~~~~pe~~~-~gf~~v--~~~~~~~~~~l~~~~~~~frr 409 (415)
||++|+++.|.|||||+|||||.++|+.+| |||+++ +++|+++++ ++++||||
T Consensus 237 ---LT~~t~iflPlt~i~g~fGMN~~~~p~~~~~~g~~~~~~~~~~~~~~~----~~~~~~kR 292 (292)
T PF01544_consen 237 ---LTIVTAIFLPLTFITGIFGMNFKGMPELDWPYGYFFVIILGLMILVAI----LLYWWFKR 292 (292)
T ss_dssp ---HHHHHHHHHHHHHHTTSTTS-SS---SSSSSS-SHHH--HHHHHHHHH----HHHCCTTS
T ss_pred ---HHHHHHHHHHHHHHHHHhhCCccCCCccCCccHHHHHHHHHHHHHHHH----HHHHheeC
Confidence 999999998889999999999999998877 776665 555555444 78888876
No 7
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=96.38 E-value=0.85 Score=45.96 Aligned_cols=92 Identities=17% Similarity=0.186 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCC-CCchhHHH
Q 014929 314 VDNTLSKLLSLKEYIDDTEDLINI----KLGNVQNQLIQFELLLTAATFVATIFAVVTGVFGMNLKASVFD-YPSAFHWV 388 (415)
Q Consensus 314 ~d~~~~~l~~l~e~i~~~~d~~~~----~Ld~~rN~imki~l~LtilTii~~i~t~IaGifGMN~~~~pe~-~~~gf~~v 388 (415)
+..+.+.++.+.++.+...+.+.. +++...|+..++ +.++|+++++|...+=+.|+ -+|-+. -| +..|-
T Consensus 216 ~~~~~~Di~~l~~~~~~~~~~~~~l~d~~~~~i~~~~N~~---mk~lTv~s~if~pptliagi--yGMNf~~mP-~~~~~ 289 (316)
T PRK11085 216 AREILRDIESLLPHNESLFQKVNFLMQAAMGFINIEQNRI---IKIFSVVSVVFLPPTLVASS--YGMNFEFMP-ELKWS 289 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH---HHHHHHHHHHHHHHHHHHhh--cccccCCCC-CCCCc
Confidence 445555566666665555555544 445566666665 99999999999999999998 234333 34 22232
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCC
Q 014929 389 LVITGLAGCLLYFSFLFYFKHKKV 412 (415)
Q Consensus 389 ~~~~~~~~~~l~~~~~~~frrk~w 412 (415)
++.-++ ++++.++.+..+.+-||
T Consensus 290 ~g~~~~-l~~~~~~~~~~~~~f~r 312 (316)
T PRK11085 290 FGYPGA-IILMILAGLAPYLYFKR 312 (316)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHH
Confidence 222222 22233355556665544
No 8
>PRK09546 zntB zinc transporter; Reviewed
Probab=95.64 E-value=0.99 Score=45.29 Aligned_cols=35 Identities=14% Similarity=0.138 Sum_probs=16.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhhh--cCCCCCCC
Q 014929 341 NVQNQLIQFELLLTAATFVATIFAVVTGVF--GMNLKASV 378 (415)
Q Consensus 341 ~~rN~imki~l~LtilTii~~i~t~IaGif--GMN~~~~p 378 (415)
|+..++|.+ +|++.+-.|+.|-+-|.= ||-+.+.+
T Consensus 261 N~~m~~Lti---lt~IflPlT~IaGiyGMNf~~mPel~~~ 297 (324)
T PRK09546 261 NRRTYTMSL---MAMVFLPTTFLTGLFGVNLGGIPGGGWP 297 (324)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHhhhccccCCCCCcCCc
Confidence 344455555 555555555544444432 45554443
No 9
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=94.80 E-value=3.1 Score=41.81 Aligned_cols=103 Identities=18% Similarity=0.196 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCC
Q 014929 302 QLEMLLEAYFVVV-DNTLSKLLSLKEYIDDTEDLINIKLGNVQNQLIQFELLLTAATFVATIFAVVTGVFGMNLKASVFD 380 (415)
Q Consensus 302 elE~LLe~Y~~~~-d~~~~~l~~l~e~i~~~~d~~~~~Ld~~rN~imki~l~LtilTii~~i~t~IaGifGMN~~~~pe~ 380 (415)
....-...|++++ +++.+.++.+..+.+.+..+.+.+++...|+...+ +.++|+++++|.-.|=+.|- =+|-+.
T Consensus 213 ~~~~~~~~~l~dv~~~~~~~~~~~~~~~~~l~~l~d~~~s~is~~~N~i---mk~LTi~s~iflPpTlIagi--yGMNf~ 287 (322)
T COG0598 213 WLSEEDREYLRDVLDHLTQLIEMLEALRERLSSLLDAYLSLINNNQNEI---MKILTIVSTIFLPPTLITGF--YGMNFK 287 (322)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhHHHHcc--cccCCC
Confidence 5555667788887 88889999999999999999999999999999997 99999999999999999996 244444
Q ss_pred -CC-chhHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 014929 381 -YP-SAFHWVLVITGLAGCLLYFSFLFYFKHKKV 412 (415)
Q Consensus 381 -~~-~gf~~v~~~~~~~~~~l~~~~~~~frrk~w 412 (415)
-| ..+.+-..+.+++ ++++..+.+.+-|+
T Consensus 288 ~mPel~~~~Gy~~~l~~---m~~~~~~~~~~frr 318 (322)
T COG0598 288 GMPELDWPYGYPIALIL---MLLLALLLYLYFRR 318 (322)
T ss_pred CCcCCCCcccHHHHHHH---HHHHHHHHHHHHHh
Confidence 35 5566543333222 33355555555443
No 10
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=94.57 E-value=3 Score=41.48 Aligned_cols=63 Identities=27% Similarity=0.412 Sum_probs=44.5
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 014929 307 LEAYFVVV-DNTLSKLLSLKEYIDDTEDLINIKLGNVQNQLIQFELLLTAATFVATIFAVVTGVFGM 372 (415)
Q Consensus 307 Le~Y~~~~-d~~~~~l~~l~e~i~~~~d~~~~~Ld~~rN~imki~l~LtilTii~~i~t~IaGifGM 372 (415)
...|++++ +++.+..+.+..+.+.+..+.+.+++..-|+..++ +.++|+++++|+-.+=+=|.
T Consensus 214 ~~~~~~dv~~~~~~l~~~~~~~~e~l~~l~d~~~~~~s~~~N~~---mk~LTvvt~IflP~t~IaGi 277 (318)
T TIGR00383 214 VREYLRDIYDHILSLLEMIETYRELLSSLMDLYLSLVNNKMNEI---MKILTVVSTIFIPLTFIAGI 277 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 34566665 56666666666666666667777777777777775 77788888888887777776
No 11
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=90.30 E-value=25 Score=36.60 Aligned_cols=58 Identities=17% Similarity=0.204 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHHHh---hhhhhHHHHH-HHHHHHHHHHHHHHHHHHhh
Q 014929 312 VVVDNTLSKLLSLKEYIDDTE-----DLINIKL---GNVQNQLIQF-ELLLTAATFVATIFAVVTGV 369 (415)
Q Consensus 312 ~~~d~~~~~l~~l~e~i~~~~-----d~~~~~L---d~~rN~imki-~l~LtilTii~~i~t~IaGi 369 (415)
....++.+.+++++..|.-+| +...... ...|--+.++ ++.|+++|++..+.+.++++
T Consensus 298 eRaRdi~E~~Es~qtRisklE~~~~Qq~~q~e~~~n~~~r~~l~k~inllL~l~~vlLv~vSt~~~~ 364 (395)
T PF10267_consen 298 ERARDIWEVMESCQTRISKLEQQQQQQVVQLEGTENSRARALLGKLINLLLTLLTVLLVFVSTVANC 364 (395)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 334556666777777776666 1222211 2233333333 66677777777666666654
No 12
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=89.18 E-value=11 Score=36.21 Aligned_cols=80 Identities=15% Similarity=0.164 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh--hcCCCCCCCCCCC-chhH
Q 014929 310 YFVVVDNTLSKLLSLKEYIDDTEDLINIKLGNVQNQLIQFELLLTAATFVATIFAVVTGV--FGMNLKASVFDYP-SAFH 386 (415)
Q Consensus 310 Y~~~~d~~~~~l~~l~e~i~~~~d~~~~~Ld~~rN~imki~l~LtilTii~~i~t~IaGi--fGMN~~~~pe~~~-~gf~ 386 (415)
..+.++.+.+.++.+.+.. ....+..++..+..+-- +|++-+=.++.|-+.|. .||.....+...+ +.++
T Consensus 204 ~~~~~~~~~~~~~~l~~~~---~~~~~~~~n~~m~~LT~----~t~iflPlt~i~g~fGMN~~~~p~~~~~~g~~~~~~~ 276 (292)
T PF01544_consen 204 LLERAESLRERLESLQDLY---QSKLSNRQNRVMKVLTI----VTAIFLPLTFITGIFGMNFKGMPELDWPYGYFFVIIL 276 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHTCHHHHHHHHHHH----HHHHHHHHHHHTTSTTS-SS---SSSSSS-SHHH--H
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhCCccCCCccCCccHHHHHHHH
Confidence 3334444444444444432 23344445555555544 33333444433333443 3466544444333 2233
Q ss_pred HHHHHHHHHH
Q 014929 387 WVLVITGLAG 396 (415)
Q Consensus 387 ~v~~~~~~~~ 396 (415)
.+++++++++
T Consensus 277 ~~~~~~~~~~ 286 (292)
T PF01544_consen 277 GLMILVAILL 286 (292)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444433
No 13
>PF07332 DUF1469: Protein of unknown function (DUF1469); InterPro: IPR009937 This entry represents proteins found in hypothetical bacterial proteins where is is annotated as ycf49 or ycf49-like. The function is not known.
Probab=84.93 E-value=7.1 Score=33.16 Aligned_cols=78 Identities=15% Similarity=0.023 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCC---CCCchhHHHHHHHHHH
Q 014929 319 SKLLSLKEYIDDTEDLINIKLGNVQNQLIQFELLLTAATFVATIFAVVTGVFGMNLKASVF---DYPSAFHWVLVITGLA 395 (415)
Q Consensus 319 ~~l~~l~e~i~~~~d~~~~~Ld~~rN~imki~l~LtilTii~~i~t~IaGifGMN~~~~pe---~~~~gf~~v~~~~~~~ 395 (415)
+..+.+.+.+++--++....+..+..+..+. +.+.++..++++++++...++..+--.+. ..|++|.++.++.+++
T Consensus 7 ~l~~~~~~lv~~~i~La~~E~~~~~~~~~~~-~~~~~~a~vl~~~~l~~l~~al~~~l~~~~~~~~~~a~liv~~~~l~l 85 (121)
T PF07332_consen 7 DLVDDLSTLVRTRIELAKAELREKARRLGRG-LALLVLAAVLALLALLFLLVALVFALWEALGLPPWLAFLIVAGLYLLL 85 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHH
Confidence 3344444445555556666666666666553 22223333333333333333333221111 1225565555544444
Q ss_pred HH
Q 014929 396 GC 397 (415)
Q Consensus 396 ~~ 397 (415)
++
T Consensus 86 a~ 87 (121)
T PF07332_consen 86 AL 87 (121)
T ss_pred HH
Confidence 43
No 14
>PRK15348 type III secretion system lipoprotein SsaJ; Provisional
Probab=84.32 E-value=1.1 Score=43.72 Aligned_cols=43 Identities=14% Similarity=0.124 Sum_probs=26.0
Q ss_pred hhhcCCCCCCCCC---CC---chhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 014929 368 GVFGMNLKASVFD---YP---SAFHWVLVITGLAGCLLYFSFLFYFKHK 410 (415)
Q Consensus 368 GifGMN~~~~pe~---~~---~gf~~v~~~~~~~~~~l~~~~~~~frrk 410 (415)
-|+|||+.+.+.. +| |+||.++++++++.+++.+..++|.+||
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (249)
T PRK15348 200 TFWIMDVINANKGKVVKWLMKYPYQLMLSLTGLLLGVGILIGYFCLRRR 248 (249)
T ss_pred ccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3799999887654 56 6776666665444443444444444444
No 15
>PF02656 DUF202: Domain of unknown function (DUF202); InterPro: IPR003807 This entry describes proteins of unknown function.
Probab=77.91 E-value=16 Score=28.12 Aligned_cols=15 Identities=13% Similarity=0.357 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHhcCC
Q 014929 398 LLYFSFLFYFKHKKV 412 (415)
Q Consensus 398 ~l~~~~~~~frrk~w 412 (415)
+++.+.+-|++++||
T Consensus 59 ~~~~~~~ry~~~~~~ 73 (73)
T PF02656_consen 59 TLIYGIYRYRRRRRW 73 (73)
T ss_pred HHHHHHHHHHHHHhC
Confidence 344467888999988
No 16
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=76.66 E-value=74 Score=30.62 Aligned_cols=15 Identities=13% Similarity=0.257 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHhc
Q 014929 396 GCLLYFSFLFYFKHK 410 (415)
Q Consensus 396 ~~~l~~~~~~~frrk 410 (415)
++.+|++++-|.|.|
T Consensus 213 ~ig~~i~l~~~~~~~ 227 (230)
T PF03904_consen 213 AIGLFIYLYEWIRAK 227 (230)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344455555555543
No 17
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=67.14 E-value=13 Score=31.61 Aligned_cols=53 Identities=15% Similarity=0.087 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 014929 355 AATFVATIFAVVTGVFGMNLKASVFDYPSAFHWVLVITGLAGCLLYFSFLFYF 407 (415)
Q Consensus 355 ilTii~~i~t~IaGifGMN~~~~pe~~~~gf~~v~~~~~~~~~~l~~~~~~~f 407 (415)
.++++.....+++++.+.|.-..+...+..|++++.-+++.+.+++...++.+
T Consensus 3 S~~Fi~~~~~~~~~Wi~~N~~~~~~~~fDpyPFilLnl~lS~~Aa~~ap~Ilm 55 (108)
T PF06210_consen 3 SWTFIIIFTVFLAVWILLNILAPPRPAFDPYPFILLNLVLSLEAAYQAPLILM 55 (108)
T ss_pred cHHHHHHHHHHHHHHHHHHhhccccCCCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777799999999998665543333333344334444444454544444
No 18
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=64.91 E-value=41 Score=28.35 Aligned_cols=58 Identities=19% Similarity=0.369 Sum_probs=30.5
Q ss_pred HHHHHHHHHhhHHHHHHHHhccCChhhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 014929 165 LDAQVKELGMEIYPVLDELASSISTLNLEH----LRRLKGHLLALTQQVQKVHDEIEHLMDD 222 (415)
Q Consensus 165 Le~~~~~Le~~~~~~ld~L~~~~~~~~Le~----l~~lK~~L~~l~~~v~~vrd~l~~Lldd 222 (415)
+++++...+..+..++.++..-++...+.+ +-.++.++..+..+++++....+-|+++
T Consensus 40 l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lLlE~ 101 (106)
T PF10805_consen 40 LEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLLLEN 101 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334445555555555555555554433 3455566666666666665555555543
No 19
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=61.84 E-value=2.3e+02 Score=30.46 Aligned_cols=29 Identities=17% Similarity=0.277 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014929 191 NLEHLRRLKGHLLALTQQVQKVHDEIEHL 219 (415)
Q Consensus 191 ~Le~l~~lK~~L~~l~~~v~~vrd~l~~L 219 (415)
..-+|.++|+++++|.+|+-.|--.++-+
T Consensus 374 ~~~KI~~~k~r~~~Ls~RiLRv~ikqeil 402 (508)
T KOG3091|consen 374 AVAKIEEAKNRHVELSHRILRVMIKQEIL 402 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999988765444433
No 20
>PF11026 DUF2721: Protein of unknown function (DUF2721); InterPro: IPR021279 This family is conserved in bacteria. The function is not known.
Probab=61.31 E-value=1.1e+02 Score=26.59 Aligned_cols=70 Identities=14% Similarity=0.258 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhh--hhhhHHHHHHHHHHHHHHHHHHH----HHHHhhhcCCCC
Q 014929 306 LLEAYFVVVDNTLSKLLSLKEYIDDTEDL----INIKLG--NVQNQLIQFELLLTAATFVATIF----AVVTGVFGMNLK 375 (415)
Q Consensus 306 LLe~Y~~~~d~~~~~l~~l~e~i~~~~d~----~~~~Ld--~~rN~imki~l~LtilTii~~i~----t~IaGifGMN~~ 375 (415)
++-.|-.+...+.+++..+.+..++..+- ...+++ .+|=++++--+.+.++++++... .|+.+++++|+.
T Consensus 15 ll~~~tnRl~ri~dR~R~L~~~~~~~~~~~~~~~~~el~~L~rR~~li~~ai~~~~~s~ll~~l~i~~lf~~~~~~~~~~ 94 (130)
T PF11026_consen 15 LLLVLTNRLARIVDRIRQLHDELRDAPDEEERRLRRELRILRRRARLIRRAITLATLSALLVCLVILLLFLSALLSIDLS 94 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchH
Confidence 34456666666666666666655432111 122233 24444444333344444333322 677788877763
No 21
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=60.92 E-value=18 Score=37.25 Aligned_cols=44 Identities=20% Similarity=0.292 Sum_probs=30.7
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 014929 332 EDLINIKLGNVQNQLIQFELLLTAATFVATIFAVVTGVFGMNLK 375 (415)
Q Consensus 332 ~d~~~~~Ld~~rN~imki~l~LtilTii~~i~t~IaGifGMN~~ 375 (415)
++++...|++.....+.-.++-|++|+.+-.+-..+=+.||++-
T Consensus 18 ~~lfs~~LgsE~~~FV~YHikRT~~tllvHs~LPlgY~~~~~~~ 61 (358)
T PF10272_consen 18 QNLFSSWLGSEDYDFVQYHIKRTSATLLVHSCLPLGYFIGMCFF 61 (358)
T ss_pred HHHHHHhhCccccchHHHHHhHhHHHHHHHHHHHHHHHhheeEe
Confidence 45666777766666666677778888877776555557788863
No 22
>COG5130 YIP3 Prenylated rab acceptor 1 and related proteins [Intracellular trafficking and secretion / Signal transduction mechanisms]
Probab=59.48 E-value=12 Score=33.43 Aligned_cols=20 Identities=30% Similarity=0.468 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHhhhcCCC
Q 014929 355 AATFVATIFAVVTGVFGMNL 374 (415)
Q Consensus 355 ilTii~~i~t~IaGifGMN~ 374 (415)
-+-++..|+-.+||+||.|=
T Consensus 80 nllLlivIgivvaGvygi~k 99 (169)
T COG5130 80 NLLLLIVIGIVVAGVYGIRK 99 (169)
T ss_pred hHHHHHHHhhhhheeeehhh
Confidence 34455667788999999984
No 23
>PF10856 DUF2678: Protein of unknown function (DUF2678); InterPro: IPR022564 This family of proteins has no known function.
Probab=59.04 E-value=9.1 Score=32.92 Aligned_cols=19 Identities=11% Similarity=0.319 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 014929 352 LLTAATFVATIFAVVTGVF 370 (415)
Q Consensus 352 ~LtilTii~~i~t~IaGif 370 (415)
.+..+|.++...|+|.|++
T Consensus 33 iiG~vT~l~VLvtii~afv 51 (118)
T PF10856_consen 33 IIGAVTSLFVLVTIISAFV 51 (118)
T ss_pred ehHHHHHHHHHHHHhheEE
Confidence 4557777777777776654
No 24
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=58.55 E-value=23 Score=31.31 Aligned_cols=19 Identities=11% Similarity=0.326 Sum_probs=10.4
Q ss_pred HHHHHHHHH-HHHHhhhcCC
Q 014929 355 AATFVATIF-AVVTGVFGMN 373 (415)
Q Consensus 355 ilTii~~i~-t~IaGifGMN 373 (415)
++.++++++ ++++|+||-.
T Consensus 82 v~Nilvsv~~~~~~~~~~~~ 101 (142)
T PF11712_consen 82 VFNILVSVFAVFFAGWYWAG 101 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 444444444 6666665554
No 25
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=58.27 E-value=23 Score=29.72 Aligned_cols=25 Identities=12% Similarity=0.142 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCCC
Q 014929 353 LTAATFVATIFAVVTGVFGMNLKAS 377 (415)
Q Consensus 353 LtilTii~~i~t~IaGifGMN~~~~ 377 (415)
++++.+.+.++++++.+.|.=++.-
T Consensus 45 ~g~IG~~~v~pil~G~~lG~WLD~~ 69 (100)
T TIGR02230 45 FGLIGWSVAIPTLLGVAVGIWLDRH 69 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6677777888899999999877654
No 26
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=58.21 E-value=3.3e+02 Score=31.08 Aligned_cols=17 Identities=18% Similarity=0.344 Sum_probs=12.5
Q ss_pred HHHHHhhhcCCCCCCCC
Q 014929 363 FAVVTGVFGMNLKASVF 379 (415)
Q Consensus 363 ~t~IaGifGMN~~~~pe 379 (415)
.+++.|++|-.=...|-
T Consensus 433 lGLl~G~~G~~~~~~p~ 449 (806)
T PF05478_consen 433 LGLLCGCCGYRRRADPT 449 (806)
T ss_pred HHHHHhhccCCCCCCCc
Confidence 48899999976655553
No 27
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=56.69 E-value=2.7e+02 Score=29.66 Aligned_cols=42 Identities=19% Similarity=0.264 Sum_probs=33.2
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhHHh
Q 014929 188 STLNLEHLRRLKGHLLALTQQVQKVHDEIEHLMDDDGDMAAM 229 (415)
Q Consensus 188 ~~~~Le~l~~lK~~L~~l~~~v~~vrd~l~~LlddD~dm~~m 229 (415)
++.+-.++|...|.+..--...++||-...++.|+..++-+|
T Consensus 384 ~k~~~~rlR~hQRkfL~AI~~fR~Vk~~qRkl~e~~nsl~d~ 425 (489)
T KOG3684|consen 384 SKGDQARLRKHQRKFLQAIHQFRSVKWEQRKLSEQANSLVDL 425 (489)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHH
Confidence 555677888888888877777888888899998887776553
No 28
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=54.10 E-value=1.7e+02 Score=26.63 Aligned_cols=31 Identities=6% Similarity=0.242 Sum_probs=17.1
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 014929 335 INIKLGNVQNQLIQFELLLTAATFVATIFAVVTGVF 370 (415)
Q Consensus 335 ~~~~Ld~~rN~imki~l~LtilTii~~i~t~IaGif 370 (415)
+...+.+.++++++- .+.+++++++++.|+|
T Consensus 143 lr~~iE~~K~~~lr~-----~~g~i~~~~a~~la~~ 173 (177)
T PF07798_consen 143 LRTEIESLKWDTLRW-----LVGVIFGCVALVLAIL 173 (177)
T ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH
Confidence 333444566677764 4445555556666654
No 29
>PRK14584 hmsS hemin storage system protein; Provisional
Probab=53.58 E-value=53 Score=29.76 Aligned_cols=27 Identities=26% Similarity=0.610 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 014929 349 FELLLTAATFVATIFAVVTGVFGMNLKA 376 (415)
Q Consensus 349 i~l~LtilTii~~i~t~IaGifGMN~~~ 376 (415)
++..||.+.=+.-++-++.|+.+| |.+
T Consensus 17 iD~~lT~~aW~gfi~l~~~~~~~~-~~~ 43 (153)
T PRK14584 17 IDIILTALAWFGFLFLLVRGLLEM-ISR 43 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hcc
Confidence 455677777777777888999998 543
No 30
>PF11286 DUF3087: Protein of unknown function (DUF3087); InterPro: IPR021438 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=52.99 E-value=39 Score=30.95 Aligned_cols=9 Identities=22% Similarity=0.589 Sum_probs=7.2
Q ss_pred HHHHHhhhc
Q 014929 363 FAVVTGVFG 371 (415)
Q Consensus 363 ~t~IaGifG 371 (415)
++....+||
T Consensus 34 s~llI~lFg 42 (165)
T PF11286_consen 34 SQLLIALFG 42 (165)
T ss_pred HHHHHHHcC
Confidence 377888999
No 31
>COG3462 Predicted membrane protein [Function unknown]
Probab=51.98 E-value=1.1e+02 Score=26.27 Aligned_cols=29 Identities=14% Similarity=0.258 Sum_probs=13.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 014929 341 NVQNQLIQFELLLTAATFVATIFAVVTGVFG 371 (415)
Q Consensus 341 ~~rN~imki~l~LtilTii~~i~t~IaGifG 371 (415)
.+-|++..+ .+.+++++....-.-.|+||
T Consensus 3 k~ven~~w~--ligliavi~~v~li~~~~~g 31 (117)
T COG3462 3 KKVENFAWL--LIGLIAVIAVVGLIPSGFHG 31 (117)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHhhccccc
Confidence 344555543 33444444444444445555
No 32
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=51.58 E-value=82 Score=29.23 Aligned_cols=55 Identities=18% Similarity=0.342 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014929 162 CMSLDAQVKELGMEIYPVLDELASSISTLNLEHLRRLKGHLLALTQQVQKVHDEIEHLMD 221 (415)
Q Consensus 162 ~~~Le~~~~~Le~~~~~~ld~L~~~~~~~~Le~l~~lK~~L~~l~~~v~~vrd~l~~Lld 221 (415)
...+|.+++.+|....+.-|.+. ..++.-..+|++++.++.++..+-+-+.++|.
T Consensus 81 vinlE~kvD~lee~fdd~~d~l~-----~q~eq~~~~~~~v~~~~q~~~~l~~K~D~~L~ 135 (189)
T TIGR02132 81 VINLEEKVDLIEEFFDDKFDELE-----AQQEQAPALKKDVTKLKQDIKSLDKKLDKILE 135 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHHhhCchHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 44666777777666655555554 23444455666666666666655555544443
No 33
>PF02060 ISK_Channel: Slow voltage-gated potassium channel; InterPro: IPR000369 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Two types of beta subunit (KCNE and KCNAB) are presently known to associate with voltage-gated alpha subunits (Kv, KCNQ and eag-like). However, not all combinations of alpha and beta subunits are possible. The KCNE family of K+ channel subunits are membrane glycoproteins that possess a single transmembrane (TM) domain. They share no structural relationship with the alpha subunit proteins, which possess pore forming domains. The subunits appear to have a regulatory function, modulating the kinetics and voltage dependence of the alpha subunits of voltage-dependent K+ channels. KCNE subunits are formed from short polypeptides of ~130 amino acids, and are divided into five subfamilies: KCNE1 (MinK/IsK), KCNE2 (MiRP1), KCNE3 (MiRP2), KCNE4 (MiRP3) and KCNE1L (AMMECR2). ; GO: 0005249 voltage-gated potassium channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2K21_A.
Probab=51.03 E-value=20 Score=31.37 Aligned_cols=48 Identities=19% Similarity=0.264 Sum_probs=31.1
Q ss_pred HHHHhhhcCCCCCCC------CCC--CchhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 014929 364 AVVTGVFGMNLKASV------FDY--PSAFHWVLVITGLAGCLLYFSFLFYFKHKK 411 (415)
Q Consensus 364 t~IaGifGMN~~~~p------e~~--~~gf~~v~~~~~~~~~~l~~~~~~~frrk~ 411 (415)
.++-+...+|=...+ ... .+.|++++.+|++.+++++.+|+.|.|-||
T Consensus 15 ~l~q~~~~~~~nsS~la~~~~~s~~~~~~~lYIL~vmgfFgff~~gImlsyvRSKK 70 (129)
T PF02060_consen 15 KLWQETVQQSSNSSPLASRSPSSSDDDNEYLYILVVMGFFGFFTVGIMLSYVRSKK 70 (129)
T ss_dssp HHHHHHHHT--TTSSGGGS-S--TT-SSTT-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCCcccccCCCCCCCCceeehHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 556666666633222 112 256888888888888888889999998775
No 34
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=50.89 E-value=55 Score=31.57 Aligned_cols=7 Identities=14% Similarity=0.852 Sum_probs=3.9
Q ss_pred hhHHHHH
Q 014929 343 QNQLIQF 349 (415)
Q Consensus 343 rN~imki 349 (415)
++++++.
T Consensus 5 k~~~~~~ 11 (248)
T PF11368_consen 5 KKRILRF 11 (248)
T ss_pred HHHHHHH
Confidence 4456665
No 35
>PF10754 DUF2569: Protein of unknown function (DUF2569); InterPro: IPR019690 This entry represents a protein that is conserved in bacteria. The function is not known, but several members are annotated as being YdgK or a homologue thereof and associated to the inner membrane. This signature also matches proteins that are described as transglutaminase-like enzymes, although this could not be confirmed.
Probab=49.59 E-value=42 Score=29.83 Aligned_cols=13 Identities=38% Similarity=0.930 Sum_probs=8.3
Q ss_pred HHHHHHHhcCCCC
Q 014929 402 SFLFYFKHKKVFP 414 (415)
Q Consensus 402 ~~~~~frrk~wl~ 414 (415)
..+.|||||+-++
T Consensus 73 ~~~lffkr~~~~P 85 (149)
T PF10754_consen 73 LLYLFFKRKRRFP 85 (149)
T ss_pred HHHHHHHccchhH
Confidence 4556678877554
No 36
>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene. This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A ....
Probab=49.32 E-value=1.9e+02 Score=25.56 Aligned_cols=113 Identities=19% Similarity=0.286 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhHHhhhhhhhhc
Q 014929 158 LELTCMSLDAQVKELGMEIYPVLDELASSISTLNLEHLRRLKGHLLALTQQVQKVHDEIEHLMDDDGDMAAMYLTEKKQR 237 (415)
Q Consensus 158 L~~~~~~Le~~~~~Le~~~~~~ld~L~~~~~~~~Le~l~~lK~~L~~l~~~v~~vrd~l~~LlddD~dm~~m~Lt~k~~~ 237 (415)
|+..+..+...+.+++..+....+++...+....-.--..+...+..+...+....+.+..-++.
T Consensus 3 l~~~~~~l~~~~~~l~~~l~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~i~~--------------- 67 (202)
T PF01442_consen 3 LDDRLDSLSSRTEELEERLEELSDEIADRLAEEIEALSERLESELEELSDRLEERLDEVKERIEE--------------- 67 (202)
T ss_dssp HHHHHHHHHHHHHHHHHCHCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------
Q ss_pred cCCCCCCCcccccccccccccCCCCCCCCCCcchhhhhhhhhcccccccCCccccCCCcchhHHHHHHHHHHHHHHH-HH
Q 014929 238 LDSSSDGYTQTNISSLDRVVSKSAPVSPVGSISGAQKLQRAFSSIVTSKHGSLISSSSNRENVEQLEMLLEAYFVVV-DN 316 (415)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~eelE~LLe~Y~~~~-d~ 316 (415)
..+++..-+..+...+ +.
T Consensus 68 -------------------------------------------------------------~~~~~~~~l~~~~~~~~~~ 86 (202)
T PF01442_consen 68 -------------------------------------------------------------RIEELKNSLDSSTSELDES 86 (202)
T ss_dssp -------------------------------------------------------------HHHHHHHHHHHHHHHHHHH
T ss_pred -------------------------------------------------------------HHHHHHHHHHHHHHHhHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Q 014929 317 TLSKLLSLKEYIDDTEDLINIKLGNVQNQL 346 (415)
Q Consensus 317 ~~~~l~~l~e~i~~~~d~~~~~Ld~~rN~i 346 (415)
+-...+.+.+.+....+-+...+......+
T Consensus 87 l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 116 (202)
T PF01442_consen 87 LSERAEELKERLEARAEELESRLEEEVDEL 116 (202)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 37
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=48.94 E-value=32 Score=29.93 Aligned_cols=20 Identities=5% Similarity=0.046 Sum_probs=9.6
Q ss_pred CCchhHHHHHHHHHHHHHHH
Q 014929 381 YPSAFHWVLVITGLAGCLLY 400 (415)
Q Consensus 381 ~~~gf~~v~~~~~~~~~~l~ 400 (415)
.+.-.++++++|+.+.++|+
T Consensus 63 ~~~i~~Ii~gv~aGvIg~Il 82 (122)
T PF01102_consen 63 EPAIIGIIFGVMAGVIGIIL 82 (122)
T ss_dssp -TCHHHHHHHHHHHHHHHHH
T ss_pred ccceeehhHHHHHHHHHHHH
Confidence 33345566666555544333
No 38
>PF04611 AalphaY_MDB: Mating type protein A alpha Y mating type dependent binding region ; InterPro: IPR007689 Mating-type protein A-alpha specifies the A-alpha-Y mating type. The A-alpha-Y protein binds to the AalphaZ protein of another mating type in Schizophyllum commune [] and may also regulate gene expression of the homokaryotic cell.; GO: 0006355 regulation of transcription, DNA-dependent, 0019953 sexual reproduction
Probab=47.54 E-value=1.2e+02 Score=26.77 Aligned_cols=77 Identities=31% Similarity=0.305 Sum_probs=46.5
Q ss_pred eccCCcchhhHHHHHHHHhccCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCChhhHHHHHHH
Q 014929 119 MNSLDGCVVQYYLELCKRLQTNKDQADDLPFEFRALELALELTCMSLDAQVKELGMEIYPVLDELASSISTLNLEHLRRL 198 (415)
Q Consensus 119 f~~~~~~~~~~~~~L~~rL~~~~~~~~~LpFE~raLE~iL~~~~~~Le~~~~~Le~~~~~~ld~L~~~~~~~~Le~l~~l 198 (415)
|++.. .+.++-|+.||+.. .||= +++..+|..|-.... +-...++...+.-...+++.|++.+..|
T Consensus 41 fdpLp---~P~ld~lr~rL~~a-----~LP~--k~iksal~aYe~AC~----RWr~~l~e~F~~tA~svsP~Nlhll~~L 106 (147)
T PF04611_consen 41 FDPLP---TPDLDGLRTRLQEA-----KLPP--KAIKSALSAYEKACA----RWRSDLEESFDITAKSVSPHNLHLLNQL 106 (147)
T ss_pred cCCCC---CccHHHHHHHHHHc-----CCCh--HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhcCchhHHHHHHH
Confidence 55543 67888999999874 4554 466666654422222 2222333344555678999999998888
Q ss_pred HHHHHHHHHHHHH
Q 014929 199 KGHLLALTQQVQK 211 (415)
Q Consensus 199 K~~L~~l~~~v~~ 211 (415)
|-++ ..++|++
T Consensus 107 R~rl--yt~QVek 117 (147)
T PF04611_consen 107 RFRL--YTQQVEK 117 (147)
T ss_pred HHHH--HHHHHHH
Confidence 6554 3344444
No 39
>PF01618 MotA_ExbB: MotA/TolQ/ExbB proton channel family MotA family only; InterPro: IPR002898 This family groups together integral membrane proteins that appear to be involved in translocation of proteins across a membrane. These proteins are probably proton channels. MotA is an essential component of the flagellar motor that uses a proton gradient to generate rotational motion in the flagellar []. ExbB is part of the TonB-dependent transduction complex. The TonB complex uses the proton gradient across the inner bacterial membrane to transport large molecules across the outer bacterial membrane.; GO: 0008565 protein transporter activity, 0006810 transport, 0016020 membrane
Probab=46.83 E-value=1.7e+02 Score=25.48 Aligned_cols=18 Identities=6% Similarity=0.244 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHhhhcCCC
Q 014929 357 TFVATIFAVVTGVFGMNL 374 (415)
Q Consensus 357 Tii~~i~t~IaGifGMN~ 374 (415)
.+.-|+..++..+..|+.
T Consensus 69 GLlGTv~Gmi~~f~~l~~ 86 (139)
T PF01618_consen 69 GLLGTVIGMIEAFQALAE 86 (139)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 334444455566666654
No 40
>PF06127 DUF962: Protein of unknown function (DUF962); InterPro: IPR009305 This family consists of several eukaryotic and prokaryotic proteins of unknown function. The yeast protein P25338 from SWISSPROT has been found to be non-essential for cell growth.
Probab=45.48 E-value=83 Score=25.83 Aligned_cols=19 Identities=16% Similarity=0.260 Sum_probs=11.9
Q ss_pred HHHHHHHHHhhhhhhHHHH
Q 014929 330 DTEDLINIKLGNVQNQLIQ 348 (415)
Q Consensus 330 ~~~d~~~~~Ld~~rN~imk 348 (415)
+.++.+..+.+.++|.+.+
T Consensus 3 ~~~~~~~~Y~~~H~~~~n~ 21 (95)
T PF06127_consen 3 SLEEFFAFYLSYHRNPINR 21 (95)
T ss_pred CHHHHHHHHHHHcCCHhhH
Confidence 4456666667666666665
No 41
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=44.95 E-value=3.2e+02 Score=26.96 Aligned_cols=74 Identities=15% Similarity=0.167 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchh
Q 014929 153 ALELALELTCMSLDAQVKELGMEIYPVLDELASSIST------LNLEHLRRLKGHLLALTQQVQKVHDEIEHLMDDDGDM 226 (415)
Q Consensus 153 aLE~iL~~~~~~Le~~~~~Le~~~~~~ld~L~~~~~~------~~Le~l~~lK~~L~~l~~~v~~vrd~l~~LlddD~dm 226 (415)
-+|+-|+.-...++.+.++++.....+--+++..-.. ..-..+-+|.+.+.+.+.....+|+-|.+|-.-.+|+
T Consensus 45 E~EaelesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQaNDdL 124 (333)
T KOG1853|consen 45 EIEAELESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQANDDL 124 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 4667777777777777777777665543333321111 1123456677788888877777888888887666665
No 42
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=44.91 E-value=31 Score=22.37 Aligned_cols=10 Identities=40% Similarity=0.275 Sum_probs=5.0
Q ss_pred HHHHHHHhcC
Q 014929 402 SFLFYFKHKK 411 (415)
Q Consensus 402 ~~~~~frrk~ 411 (415)
+.+++.|||+
T Consensus 24 ~~~~~~~rk~ 33 (34)
T TIGR01167 24 GGLLLRKRKK 33 (34)
T ss_pred HHHHheeccc
Confidence 4455555543
No 43
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=44.77 E-value=1e+02 Score=28.46 Aligned_cols=59 Identities=14% Similarity=0.220 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014929 161 TCMSLDAQVKELGMEIYPVLDELASSISTLNLEHLRRLKGHLLALTQQVQKVHDEIEHL 219 (415)
Q Consensus 161 ~~~~Le~~~~~Le~~~~~~ld~L~~~~~~~~Le~l~~lK~~L~~l~~~v~~vrd~l~~L 219 (415)
-...|+.....++..+..+.+.+..+-+.-.-=+|++.|+++-++..+++++-..+.++
T Consensus 86 R~~lLe~~~~~l~~ri~eLe~~l~~kad~vvsYqll~hr~e~ee~~~~l~~le~~~~~~ 144 (175)
T PRK13182 86 DFEQLEAQLNTITRRLDELERQLQQKADDVVSYQLLQHRREMEEMLERLQKLEARLKKL 144 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555544444433333344678999999999999999988777774
No 44
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=44.72 E-value=1.7e+02 Score=29.66 Aligned_cols=51 Identities=12% Similarity=0.231 Sum_probs=33.4
Q ss_pred HHHhhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014929 171 ELGMEIYPVLDELASSISTLNLEHLRRLKGHLLALTQQVQKVHDEIEHLMD 221 (415)
Q Consensus 171 ~Le~~~~~~ld~L~~~~~~~~Le~l~~lK~~L~~l~~~v~~vrd~l~~Lld 221 (415)
++.....++.++......=..-..|..+-++|.+|+++++.++..|+++..
T Consensus 267 ~lr~~~qe~~e~~L~~LnlPTRsElDe~~krL~ELrR~vr~L~k~l~~l~~ 317 (320)
T TIGR01834 267 RLRIQQQEIVEALLKMLNLPTRSELDEAHQRIQQLRREVKSLKKRLGDLEA 317 (320)
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344444445555444433333456677778889999999999999888754
No 45
>PRK11644 sensory histidine kinase UhpB; Provisional
Probab=44.42 E-value=80 Score=33.60 Aligned_cols=63 Identities=19% Similarity=0.094 Sum_probs=38.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCchhHHHHHHHHHHHHHHHH-HHHHHHHhcCCCCC
Q 014929 344 NQLIQFELLLTAATFVATIFAVVTGVFGMNLKASVFDYPSAFHWVLVITGLAGCLLYF-SFLFYFKHKKVFPL 415 (415)
Q Consensus 344 N~imki~l~LtilTii~~i~t~IaGifGMN~~~~pe~~~~gf~~v~~~~~~~~~~l~~-~~~~~frrk~wl~~ 415 (415)
++--++-++++++++.+.+.++..|.|+-. +..++.+.+++.+.+.-++ ..+-|.++++|+++
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~l~~~~g~~~~~p~~~l~~~~~~~~~~~~l 167 (495)
T PRK11644 104 RDWRTLLLQGAALTAAALLQSLPWLWHGKE---------GWNALLLTLTGGLTLAPTCLLFWHYLAQNTWLPL 167 (495)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hHHHHHHHHhchHHHHHHHHHHHHHHhhcccccC
Confidence 334444445666677777777777777642 2355555555555554444 34448889999874
No 46
>PHA03231 glycoprotein BALF4; Provisional
Probab=43.21 E-value=88 Score=35.72 Aligned_cols=18 Identities=11% Similarity=0.152 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 014929 314 VDNTLSKLLSLKEYIDDT 331 (415)
Q Consensus 314 ~d~~~~~l~~l~e~i~~~ 331 (415)
++.|..........+.++
T Consensus 632 le~m~ReyN~y~qr~~dl 649 (829)
T PHA03231 632 LEEIFREYNLYKQRFYDI 649 (829)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 445555444444444333
No 47
>PF03408 Foamy_virus_ENV: Foamy virus envelope protein ; InterPro: IPR005070 Expression of the envelope (Env) glycoprotein is essential for viral particle egress. This feature is unique to the Spumavirinae, a subclass of the Retroviridae. ; GO: 0019031 viral envelope
Probab=42.77 E-value=19 Score=40.37 Aligned_cols=95 Identities=18% Similarity=0.199 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH-------------------HHHHHHHHHHHHHHHHhhhcCCC
Q 014929 314 VDNTLSKLLSLKEYIDDTEDLINIKLGNVQNQLIQFEL-------------------LLTAATFVATIFAVVTGVFGMNL 374 (415)
Q Consensus 314 ~d~~~~~l~~l~e~i~~~~d~~~~~Ld~~rN~imki~l-------------------~LtilTii~~i~t~IaGifGMN~ 374 (415)
+-.++.++..++-.+.++-|.+.-++....-+++|++| .=++.+++..|+.|+.|.+|==|
T Consensus 862 LvgiIaklk~i~IevTStwEsIKdQierakaeLLRLDlHEGD~p~WikqL~~At~DvWPaaA~~~~~iGnfL~~ta~giF 941 (981)
T PF03408_consen 862 LVGIIAKLKGIQIEVTSTWESIKDQIERAKAELLRLDLHEGDYPAWIKQLASATKDVWPAAASFLSGIGNFLSGTAGGIF 941 (981)
T ss_pred HHHHHHHhcCcEEEEeehHhhHHHHHHHHHHHHheeecccCCcHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhcccccc
Confidence 44455555555545555655555555555555555443 23567788888888875555433
Q ss_pred CCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 014929 375 KASVFDYPSAFHWVLVITGLAGCLLYFSFLFYFKHKKVFP 414 (415)
Q Consensus 375 ~~~pe~~~~gf~~v~~~~~~~~~~l~~~~~~~frrk~wl~ 414 (415)
..-...-.|+=++++|+.+++++ ++.||--+|++
T Consensus 942 Gtafs~LgY~KPiliGi~ii~li------ili~kIisWlp 975 (981)
T PF03408_consen 942 GTAFSILGYAKPILIGIVIILLI------ILIFKIISWLP 975 (981)
T ss_pred chHHHHHhhhhhHHHHHHHHHHH------HHHHHHHHhcc
Confidence 32111111444556555554443 44456666664
No 48
>PF09583 Phageshock_PspG: Phage shock protein G (Phageshock_PspG); InterPro: IPR014318 This protein previously was designated yjbO in Escherichia coli. It is found only in genomes that have the phage shock operon (psp), but it is only rarely encoded near other psp genes. The psp regulon is upregulated in response to a number of stress conditions, including ethanol, expression of the filamentous phage secretin protein IV and other secretins and heat shock.
Probab=42.36 E-value=22 Score=27.43 Aligned_cols=18 Identities=22% Similarity=0.381 Sum_probs=13.3
Q ss_pred HHHHHHHhhhcCCCCCCC
Q 014929 361 TIFAVVTGVFGMNLKASV 378 (415)
Q Consensus 361 ~i~t~IaGifGMN~~~~p 378 (415)
+...+++|.||+=++-.|
T Consensus 32 ~~vm~l~Gm~~lviKLLP 49 (65)
T PF09583_consen 32 FAVMFLGGMFGLVIKLLP 49 (65)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344888999999887654
No 49
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=41.77 E-value=5.5 Score=33.09 Aligned_cols=11 Identities=18% Similarity=0.368 Sum_probs=5.7
Q ss_pred HHHHHHHHhcC
Q 014929 401 FSFLFYFKHKK 411 (415)
Q Consensus 401 ~~~~~~frrk~ 411 (415)
++.|||++|||
T Consensus 85 ~l~w~f~~r~k 95 (96)
T PTZ00382 85 FLCWWFVCRGK 95 (96)
T ss_pred HHhheeEEeec
Confidence 34555555554
No 50
>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.66 E-value=3.4e+02 Score=26.13 Aligned_cols=61 Identities=20% Similarity=0.281 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHhc-----cCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 014929 162 CMSLDAQVKELGMEIYPVLDELAS-----SISTLNLEHLRRLKGHLLALTQQVQKVHDEIEHLMDD 222 (415)
Q Consensus 162 ~~~Le~~~~~Le~~~~~~ld~L~~-----~~~~~~Le~l~~lK~~L~~l~~~v~~vrd~l~~Lldd 222 (415)
...++.+++-|=.+...+.|++.+ ..++.....|.+.|.-|....+--..+|.-+....+.
T Consensus 53 ~ks~~~eie~LLeql~~vndsm~~~~~s~a~~aa~~htL~RHrEILqdy~qef~rir~n~~a~~e~ 118 (231)
T KOG3208|consen 53 FKSLENEIEGLLEQLQDVNDSMNDCASSPANSAAVMHTLQRHREILQDYTQEFRRIRSNIDAKRER 118 (231)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444455555544 2334456667777766666666666666555555443
No 51
>PF06196 DUF997: Protein of unknown function (DUF997); InterPro: IPR010398 This is a family of predicted bacterial membrane protein with unknown function.
Probab=39.58 E-value=2e+02 Score=23.09 Aligned_cols=24 Identities=8% Similarity=-0.087 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCC
Q 014929 354 TAATFVATIFAVVTGVFGMNLKAS 377 (415)
Q Consensus 354 tilTii~~i~t~IaGifGMN~~~~ 377 (415)
|++..++-..--+.+-||..-..+
T Consensus 10 tl~l~l~yf~~W~~~ay~~~~~~~ 33 (80)
T PF06196_consen 10 TLGLTLIYFAWWYGFAYGLGNGDG 33 (80)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCc
Confidence 333333333355566677764433
No 52
>PF04226 Transgly_assoc: Transglycosylase associated protein; InterPro: IPR007341 This bacterial protein is predicted to be an integral membrane protein. Some family members have been annotated as transglycosylase-associated proteins, but no experimental evidence is provided. This family was annotated based on the information in P76011 from SWISSPROT.; GO: 0016021 integral to membrane
Probab=39.55 E-value=1e+02 Score=22.16 Aligned_cols=15 Identities=20% Similarity=0.286 Sum_probs=10.4
Q ss_pred HHHHHHHHHHhhhcC
Q 014929 358 FVATIFAVVTGVFGM 372 (415)
Q Consensus 358 ii~~i~t~IaGifGM 372 (415)
+.+-++.++++.+|+
T Consensus 6 iGa~vGg~l~~~lg~ 20 (48)
T PF04226_consen 6 IGAFVGGWLFGLLGI 20 (48)
T ss_pred HHHHHHHHHHHHhcc
Confidence 345556778888888
No 53
>PF12263 DUF3611: Protein of unknown function (DUF3611); InterPro: IPR022051 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 180 and 205 amino acids in length. There are two completely conserved residues (W and G) that may be functionally important.
Probab=39.41 E-value=96 Score=28.90 Aligned_cols=54 Identities=15% Similarity=0.116 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCCCCCCC-C-CchhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 014929 350 ELLLTAATFVATIFAVVTGVFGMNLKASVFD-Y-PSAFHWVLVITGLAGCLLYFSFLFYFKHK 410 (415)
Q Consensus 350 ~l~LtilTii~~i~t~IaGifGMN~~~~pe~-~-~~gf~~v~~~~~~~~~~l~~~~~~~frrk 410 (415)
.+.|++++.+...|++ +++=+..++... . ..++++.+.+.++.++ ..++.||+.
T Consensus 25 QlvLgvVs~~iL~F~~---~~~~~~~~~~~~~G~~~gl~~a~~gl~~l~~----si~~~fry~ 80 (183)
T PF12263_consen 25 QLVLGVVSAVILLFAN---LFSGRATSPNRNPGLGIGLFLAICGLVALFF----SIFWSFRYT 80 (183)
T ss_pred HHHHHHHHHHHHHHHh---hccccCCCCCcCCCcchHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 3456666666666644 344444333211 1 2466665555554444 455555543
No 54
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=37.54 E-value=3.1e+02 Score=24.68 Aligned_cols=36 Identities=17% Similarity=0.482 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhH
Q 014929 192 LEHLRRLKGHLLALTQQVQKVHDEIEHLMDDDGDMA 227 (415)
Q Consensus 192 Le~l~~lK~~L~~l~~~v~~vrd~l~~LlddD~dm~ 227 (415)
+..|..+......+..+...++++=++|+++...+.
T Consensus 27 ~~~l~~l~~~~~~Vs~kT~~l~~~ce~Ll~eq~~L~ 62 (157)
T PF04136_consen 27 LDQLDELQEQYNSVSEKTNSLHEACEQLLEEQTRLE 62 (157)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 455555666666666666666766666666655543
No 55
>PF14654 Epiglycanin_C: Mucin, catalytic, TM and cytoplasmic tail region
Probab=37.50 E-value=59 Score=27.22 Aligned_cols=31 Identities=10% Similarity=0.177 Sum_probs=22.5
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 014929 379 FDYPSAFHWVLVITGLAGCLLYFSFLFYFKH 409 (415)
Q Consensus 379 e~~~~gf~~v~~~~~~~~~~l~~~~~~~frr 409 (415)
.+.||..+.+..+++++++.+++++.++.|+
T Consensus 14 sL~PWeIfLItLasVvvavGl~aGLfFcvR~ 44 (106)
T PF14654_consen 14 SLKPWEIFLITLASVVVAVGLFAGLFFCVRN 44 (106)
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3456666666777777788888888888764
No 56
>PF04341 DUF485: Protein of unknown function, DUF485; InterPro: IPR007436 This family includes several putative integral membrane proteins.
Probab=36.97 E-value=2.3e+02 Score=23.01 Aligned_cols=24 Identities=13% Similarity=-0.046 Sum_probs=12.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 014929 383 SAFHWVLVITGLAGCLLYFSFLFYFKHK 410 (415)
Q Consensus 383 ~gf~~v~~~~~~~~~~l~~~~~~~frrk 410 (415)
+|+++.++..+++.+ +.++|.++-
T Consensus 54 ~g~~~g~~~~~~~~~----l~~~Yv~~A 77 (91)
T PF04341_consen 54 LGIVLGLGQIVFAWV----LTWLYVRRA 77 (91)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 566555544433333 566776654
No 57
>PRK09459 pspG phage shock protein G; Reviewed
Probab=36.87 E-value=29 Score=27.61 Aligned_cols=19 Identities=26% Similarity=0.441 Sum_probs=14.0
Q ss_pred HHHHHHHHhhhcCCCCCCC
Q 014929 360 ATIFAVVTGVFGMNLKASV 378 (415)
Q Consensus 360 ~~i~t~IaGifGMN~~~~p 378 (415)
++.+.+++|.||+=++-.|
T Consensus 31 a~~vM~l~Gm~~lviKLLP 49 (76)
T PRK09459 31 ATLVMFLGGMFALMIKLLP 49 (76)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444889999999887654
No 58
>PF11669 WBP-1: WW domain-binding protein 1; InterPro: IPR021684 This family of proteins represents WBP-1, a ligand of the WW domain of Yes-associated protein. This protein has a proline-rich domain. WBP-1 does not bind to the SH3 domain [].
Probab=36.73 E-value=37 Score=28.53 Aligned_cols=11 Identities=27% Similarity=0.117 Sum_probs=4.8
Q ss_pred chhHHHHHHHH
Q 014929 383 SAFHWVLVITG 393 (415)
Q Consensus 383 ~gf~~v~~~~~ 393 (415)
|.||.++++++
T Consensus 22 w~FWlv~~lii 32 (102)
T PF11669_consen 22 WYFWLVWVLII 32 (102)
T ss_pred HHHHHHHHHHH
Confidence 34554444433
No 59
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=36.68 E-value=75 Score=29.75 Aligned_cols=9 Identities=44% Similarity=0.914 Sum_probs=5.8
Q ss_pred HHHHHHHhc
Q 014929 402 SFLFYFKHK 410 (415)
Q Consensus 402 ~~~~~frrk 410 (415)
+..+|+|||
T Consensus 192 ~~~~~lkkk 200 (206)
T PF06570_consen 192 ALRFYLKKK 200 (206)
T ss_pred HHHHHHHHH
Confidence 556777765
No 60
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=36.64 E-value=5.5e+02 Score=30.24 Aligned_cols=78 Identities=27% Similarity=0.469 Sum_probs=50.6
Q ss_pred CCCCcccHHHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014929 143 QADDLPFEFRAL-ELALELTCMSLDAQVKELGMEIYPVLDELASSISTLNLEHLRRLKGHLLALTQQVQKVHDEIEHLMD 221 (415)
Q Consensus 143 ~~~~LpFE~raL-E~iL~~~~~~Le~~~~~Le~~~~~~ld~L~~~~~~~~Le~l~~lK~~L~~l~~~v~~vrd~l~~Lld 221 (415)
+.+.-||-.+.= +..|...|..++..+..|+ .+++.+ .+.++++|..|..++..+.++|..++++++
T Consensus 159 ~~~~sp~~~~~~~~~hL~velAdle~kir~Lr-------qElEEK-----~enll~lr~eLddleae~~klrqe~~e~l~ 226 (1195)
T KOG4643|consen 159 ELYKSPYDIVVKKNLHLEVELADLEKKIRTLR-------QELEEK-----FENLLRLRNELDDLEAEISKLRQEIEEFLD 226 (1195)
T ss_pred CCCCCcchhhcchhHHHHHHHHHHHHHHHHHH-------HHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567742221 2334444454544444444 444443 377899999999999999999999999998
Q ss_pred CcchhHHhhhhh
Q 014929 222 DDGDMAAMYLTE 233 (415)
Q Consensus 222 dD~dm~~m~Lt~ 233 (415)
+-..+ ++|..+
T Consensus 227 ea~ra-~~yrde 237 (1195)
T KOG4643|consen 227 EAHRA-DRYRDE 237 (1195)
T ss_pred HHHhh-hhhhhH
Confidence 65543 556544
No 61
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=36.39 E-value=1.2e+02 Score=28.36 Aligned_cols=14 Identities=29% Similarity=0.717 Sum_probs=7.7
Q ss_pred HHHHHHHHHHhhhc
Q 014929 358 FVATIFAVVTGVFG 371 (415)
Q Consensus 358 ii~~i~t~IaGifG 371 (415)
+.+++++++.|+.|
T Consensus 88 ~~~~if~~~~gi~~ 101 (206)
T PF06570_consen 88 LFFGIFSLLFGIMG 101 (206)
T ss_pred HHHHHHHHHHHHHH
Confidence 34455566666554
No 62
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=35.36 E-value=83 Score=24.32 Aligned_cols=49 Identities=16% Similarity=0.346 Sum_probs=20.4
Q ss_pred HHHHHHHHHhhHHHHHHHHhccCChhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014929 165 LDAQVKELGMEIYPVLDELASSISTLNL-EHLRRLKGHLLALTQQVQKVHDEIEHL 219 (415)
Q Consensus 165 Le~~~~~Le~~~~~~ld~L~~~~~~~~L-e~l~~lK~~L~~l~~~v~~vrd~l~~L 219 (415)
+++++.+||..+.-..+.+.. | +.|.+-.+.+..|++.++.+++-+..+
T Consensus 2 le~Ri~~LE~~la~qe~~ie~------Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 51 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEE------LNDVVTEQQRQIDRLQRQLRLLRERLREL 51 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555566555443333321 1 123344444555555555555444444
No 63
>TIGR03358 VI_chp_5 type VI secretion protein, VC_A0107 family. Work by Mougous, et al. (2006), describes IAHP-related loci as a type VI secretion system (PubMed:16763151). This protein family is associated with type VI secretion loci, although not treated explicitly by Mougous, et al.
Probab=34.88 E-value=80 Score=28.77 Aligned_cols=39 Identities=15% Similarity=0.293 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhCcchhHHh
Q 014929 191 NLEHLRRLKGHLLALTQQV---QKVHDEIEHLMDDDGDMAAM 229 (415)
Q Consensus 191 ~Le~l~~lK~~L~~l~~~v---~~vrd~l~~LlddD~dm~~m 229 (415)
.|.+|..+|+.|..|++.+ ..+|+.|++++.|++.+..+
T Consensus 111 ~L~~LlelR~~L~~L~~~l~~~~~~~~~l~~~l~d~~~~~~L 152 (159)
T TIGR03358 111 ELKKLLEAREALRDLKGPLDNNPDLRKLLQELLKDKDLLEKL 152 (159)
T ss_pred HHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHCCHHHHHHH
Confidence 4778888999999999887 46899999999988777653
No 64
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=34.81 E-value=38 Score=38.18 Aligned_cols=27 Identities=26% Similarity=0.205 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 014929 387 WVLVITGLAGCLLYFSFLFYFKHKKVF 413 (415)
Q Consensus 387 ~v~~~~~~~~~~l~~~~~~~frrk~wl 413 (415)
.++++++++.++++.++++|||||.|-
T Consensus 277 ~ILG~~~livl~lL~vLl~yCrrkc~~ 303 (807)
T PF10577_consen 277 AILGGTALIVLILLCVLLCYCRRKCLK 303 (807)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccCC
Confidence 344556666677777889999998774
No 65
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=34.79 E-value=2.4e+02 Score=22.53 Aligned_cols=20 Identities=15% Similarity=0.444 Sum_probs=9.4
Q ss_pred HHHHHHHHHHhhHHHHHHHH
Q 014929 164 SLDAQVKELGMEIYPVLDEL 183 (415)
Q Consensus 164 ~Le~~~~~Le~~~~~~ld~L 183 (415)
.+...++.++.++.++.++.
T Consensus 30 ~~~~ti~~l~~~~~~i~~e~ 49 (90)
T PF06103_consen 30 EVNKTIDTLQEQVDPITKEI 49 (90)
T ss_pred HHHHHHHHHHHhHHHHHHHH
Confidence 33444445555555544443
No 66
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=34.56 E-value=95 Score=25.03 Aligned_cols=43 Identities=23% Similarity=0.403 Sum_probs=35.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhHHhhhhhh
Q 014929 191 NLEHLRRLKGHLLALTQQVQKVHDEIEHLMDDDGDMAAMYLTEK 234 (415)
Q Consensus 191 ~Le~l~~lK~~L~~l~~~v~~vrd~l~~LlddD~dm~~m~Lt~k 234 (415)
-+.++..++..|..|..+|..|+++-++|-. +..+...|+..-
T Consensus 21 Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~-EN~~Lq~YI~nL 63 (80)
T PF10224_consen 21 LIQEILELQDSLEALSDRVEEVKEENEKLES-ENEYLQQYIGNL 63 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 3567888999999999999999999998854 566777787663
No 67
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=34.49 E-value=57 Score=29.82 Aligned_cols=17 Identities=12% Similarity=0.321 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHhhhc
Q 014929 355 AATFVATIFAVVTGVFG 371 (415)
Q Consensus 355 ilTii~~i~t~IaGifG 371 (415)
+..+++++.-+++|+-|
T Consensus 9 i~~iilgilli~~gI~~ 25 (191)
T PF04156_consen 9 IILIILGILLIASGIAA 25 (191)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444444
No 68
>PF11970 Git3_C: G protein-coupled glucose receptor regulating Gpa2 C-term; InterPro: IPR022596 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This family is the conserved C-terminal domain of the member proteins.
Probab=33.88 E-value=1.3e+02 Score=23.79 Aligned_cols=54 Identities=7% Similarity=0.037 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 014929 356 ATFVATIFAVVTGVFGMNLKASVFDYP-SAFHWVLVITGLAGCLLYFSFLFYFKHKKV 412 (415)
Q Consensus 356 lTii~~i~t~IaGifGMN~~~~pe~~~-~gf~~v~~~~~~~~~~l~~~~~~~frrk~w 412 (415)
.=++..++-++++.++.|-+. ..+| +.+.++.+++..+.+++= .+++.+++|.|
T Consensus 20 ~Yi~lwlfP~~~~~~~~~~~~--~~~p~~~l~~i~~~~~~~~G~VD-~lvf~~~erpw 74 (76)
T PF11970_consen 20 VYIVLWLFPFAAHRMQYMYEI--GHGPSFWLFCIAGFMQPSQGFVD-CLVFTLRERPW 74 (76)
T ss_pred HHHHHHHHHHHHHHHHHHhcc--CCCCchHHHHHHHHHHHccCHHH-hhheeeecccC
Confidence 335555656777777776221 1222 233333333333222111 24444677777
No 69
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=33.66 E-value=86 Score=29.05 Aligned_cols=19 Identities=11% Similarity=0.338 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHhhhcCC
Q 014929 355 AATFVATIFAVVTGVFGMN 373 (415)
Q Consensus 355 ilTii~~i~t~IaGifGMN 373 (415)
++++.+++.++++++||.+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~ 30 (199)
T PF10112_consen 12 ILGVLIAAITFLVSFFGFD 30 (199)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 4455555557777777765
No 70
>TIGR00833 actII Transport protein. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. This sub-family includes the S. coelicolor ActII3 protein, which may play a role in drug resistance, and the M. tuberculosis MmpL7 protein, which catalyzes export of an outer membrane lipid, phthiocerol dimycocerosate.
Probab=32.87 E-value=1.5e+02 Score=34.21 Aligned_cols=37 Identities=5% Similarity=0.060 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCCCCCCchhHHHHHH
Q 014929 355 AATFVATIFAVVTGVFGMNLKASVFDYPSAFHWVLVI 391 (415)
Q Consensus 355 ilTii~~i~t~IaGifGMN~~~~pe~~~~gf~~v~~~ 391 (415)
--++.++..|.++|+.+|-+-..+...+.|+...+++
T Consensus 278 g~~I~~s~lT~~~gf~~l~~~~~~~~~~~Gi~~a~gv 314 (910)
T TIGR00833 278 GKAILGSALTVAVAFLALSLARLPSFKTLGVSCAVGV 314 (910)
T ss_pred HHHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHH
Confidence 4455566668888888888866554444454444433
No 71
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=32.67 E-value=33 Score=27.22 Aligned_cols=23 Identities=9% Similarity=0.255 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCC
Q 014929 355 AATFVATIFAVVTGVFGMNLKAS 377 (415)
Q Consensus 355 ilTii~~i~t~IaGifGMN~~~~ 377 (415)
.+-+++++.+|+.|++=-|+..+
T Consensus 15 ~il~~~~iisfi~Gy~~q~~~~~ 37 (76)
T PF06645_consen 15 YILIISAIISFIVGYITQSFSYT 37 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666777788888887776543
No 72
>COG3696 Putative silver efflux pump [Inorganic ion transport and metabolism]
Probab=32.53 E-value=34 Score=39.25 Aligned_cols=51 Identities=20% Similarity=0.360 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCCCCC--chhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 014929 356 ATFVATIFAVVTGVFGMNLKASVFDYP--SAFHWVLVITGLAGCLLYFSFLFYFKHK 410 (415)
Q Consensus 356 lTii~~i~t~IaGifGMN~~~~pe~~~--~gf~~v~~~~~~~~~~l~~~~~~~frrk 410 (415)
+-++..++++++|+++|++.+++-.-+ -||...+++...-++ +|..|+|.+
T Consensus 890 li~~~lP~Al~GGv~~l~l~G~~lSvas~vGFiaL~GVA~lngl----vmv~~~~~~ 942 (1027)
T COG3696 890 LIFSNLPFALIGGVIALALRGFNLSVAAAVGFIALFGVAVLNGV----VMVSYIRQA 942 (1027)
T ss_pred HHHhcCcHHHhhhHHHhhhcCceEeehhhhhHHHHHHHHHhcch----hhHHHHHHH
Confidence 334445669999999999988865433 788777777666666 677777643
No 73
>PF13273 DUF4064: Protein of unknown function (DUF4064)
Probab=31.81 E-value=89 Score=25.53 Aligned_cols=14 Identities=21% Similarity=0.081 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHH
Q 014929 350 ELLLTAATFVATIF 363 (415)
Q Consensus 350 ~l~LtilTii~~i~ 363 (415)
|..|+++..+..+.
T Consensus 5 E~iL~~Ig~il~il 18 (100)
T PF13273_consen 5 EKILGWIGGILGIL 18 (100)
T ss_pred HHHHHHHHHHHHHH
Confidence 44555555555544
No 74
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=31.37 E-value=97 Score=21.45 Aligned_cols=9 Identities=33% Similarity=0.390 Sum_probs=4.5
Q ss_pred HHHHHHhcC
Q 014929 403 FLFYFKHKK 411 (415)
Q Consensus 403 ~~~~frrk~ 411 (415)
+++.|.+||
T Consensus 24 ~~YaCcykk 32 (38)
T PF02439_consen 24 FYYACCYKK 32 (38)
T ss_pred HHHHHHHcc
Confidence 343455555
No 75
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=31.33 E-value=2.7e+02 Score=24.42 Aligned_cols=28 Identities=14% Similarity=0.327 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014929 192 LEHLRRLKGHLLALTQQVQKVHDEIEHL 219 (415)
Q Consensus 192 Le~l~~lK~~L~~l~~~v~~vrd~l~~L 219 (415)
-+.+-.++..+..+...+..++..++.|
T Consensus 88 ~~eV~~v~~dv~~i~~dv~~v~~~V~~L 115 (126)
T PF07889_consen 88 KDEVTEVREDVSQIGDDVDSVQQMVEGL 115 (126)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666666665
No 76
>PF05591 DUF770: Protein of unknown function (DUF770); InterPro: IPR008312 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, these proteins are encoded in type VI secretion loci (including the SCI genomic island in Salmonella enterica and the imp locus in Rhizobium leguminosarum) implicated in pathogenicity and protein secretion [, , [].
Probab=31.28 E-value=81 Score=28.65 Aligned_cols=39 Identities=15% Similarity=0.338 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhCcchhHHh
Q 014929 191 NLEHLRRLKGHLLALTQQVQ---KVHDEIEHLMDDDGDMAAM 229 (415)
Q Consensus 191 ~Le~l~~lK~~L~~l~~~v~---~vrd~l~~LlddD~dm~~m 229 (415)
.|.+|..+|++|..|+..+. .+|+.|++++.|.+.+..+
T Consensus 110 ~L~~LlelR~~L~~L~~~l~~~~~~r~~l~~~l~~~~~~~~l 151 (157)
T PF05591_consen 110 ELRKLLELREQLRDLKGPLDNNPAFRKLLQEILSDPEALEKL 151 (157)
T ss_pred HHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHCCHHHHHHH
Confidence 47788888999999888774 5899999999998887653
No 77
>PF10003 DUF2244: Integral membrane protein (DUF2244); InterPro: IPR019253 This entry consists of various bacterial putative membrane proteins with no known function.
Probab=30.96 E-value=1.6e+02 Score=25.93 Aligned_cols=28 Identities=25% Similarity=0.415 Sum_probs=18.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 014929 384 AFHWVLVITGLAGCLLYFSFLFYFKHKK 411 (415)
Q Consensus 384 gf~~v~~~~~~~~~~l~~~~~~~frrk~ 411 (415)
|.|.++.++++-.++++.++..++|+.+
T Consensus 34 GaW~Vl~F~glev~~l~~a~~~~~r~~~ 61 (140)
T PF10003_consen 34 GAWPVLPFAGLEVLALWYAFRRNYRHAR 61 (140)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence 4566666666666666667777777654
No 78
>PF08173 YbgT_YccB: Membrane bound YbgT-like protein; InterPro: IPR012994 This family contains a set of membrane proteins, typically 33 amino acids long. The family has no known function, but the protein is found in the operon CydAB in Escherichia coli. Members have a consensus motif (MWYFXW), which is rich in aromatic residues. The protein forms a single membrane-spanning helix. This family seems to be restricted to proteobacteria [].
Probab=30.81 E-value=92 Score=20.11 Aligned_cols=18 Identities=17% Similarity=0.255 Sum_probs=9.8
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 014929 384 AFHWVLVITGLAGCLLYF 401 (415)
Q Consensus 384 gf~~v~~~~~~~~~~l~~ 401 (415)
-|-|++|+.+++++.+..
T Consensus 3 YfaWilG~~lA~~~~i~~ 20 (28)
T PF08173_consen 3 YFAWILGVLLACAFGILN 20 (28)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 455666665555553433
No 79
>PRK02793 phi X174 lysis protein; Provisional
Probab=30.48 E-value=1.5e+02 Score=23.26 Aligned_cols=50 Identities=14% Similarity=0.171 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhhHHHHHHHHhccCChhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014929 164 SLDAQVKELGMEIYPVLDELASSISTLNL-EHLRRLKGHLLALTQQVQKVHDEIEHL 219 (415)
Q Consensus 164 ~Le~~~~~Le~~~~~~ld~L~~~~~~~~L-e~l~~lK~~L~~l~~~v~~vrd~l~~L 219 (415)
.+++++.+||..+....+.+.. | +-|.+-.+.+..+++.++.+++-+..+
T Consensus 5 ~~e~Ri~~LE~~lafQe~tIe~------Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 55 (72)
T PRK02793 5 SLEARLAELESRLAFQEITIEE------LNVTVTAHEMEMAKLRDHLRLLTEKLKAS 55 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3566677777666544433321 2 224445555666666666655555544
No 80
>COG5570 Uncharacterized small protein [Function unknown]
Probab=30.05 E-value=1.4e+02 Score=22.23 Aligned_cols=48 Identities=25% Similarity=0.277 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHH
Q 014929 160 LTCMSLDAQVKELGMEIYPVLDELASSISTLNLEHLRRLKGHLLALTQQVQKV 212 (415)
Q Consensus 160 ~~~~~Le~~~~~Le~~~~~~ld~L~~~~~~~~Le~l~~lK~~L~~l~~~v~~v 212 (415)
.-...|+.+-..||.++..+ ..+++.+. ..++.+||+=..|+..+.++
T Consensus 5 shl~eL~kkHg~le~ei~ea----~n~Ps~dd-~~i~eLKRrKL~lKeeIEkL 52 (57)
T COG5570 5 SHLAELEKKHGNLEREIQEA----MNSPSSDD-LAIRELKRRKLRLKEEIEKL 52 (57)
T ss_pred HHHHHHHHhhchHHHHHHHH----hcCCCcch-HHHHHHHHHHHHHHHHHHHH
Confidence 33445555555566555432 33444443 34566666555554444443
No 81
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=29.79 E-value=1.4e+02 Score=22.35 Aligned_cols=28 Identities=11% Similarity=0.432 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHhCcchhHHhh
Q 014929 203 LALTQQVQKVHDEIEHLMDDDGDMAAMY 230 (415)
Q Consensus 203 ~~l~~~v~~vrd~l~~LlddD~dm~~m~ 230 (415)
..+++..+.+++.++++-++=.++.++|
T Consensus 17 ~tvk~en~~i~~~ve~i~envk~ll~lY 44 (55)
T PF05377_consen 17 NTVKKENEEISESVEKIEENVKDLLSLY 44 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444433333444444
No 82
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=29.72 E-value=1.2e+02 Score=22.74 Aligned_cols=25 Identities=16% Similarity=0.426 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 014929 197 RLKGHLLALTQQVQKVHDEIEHLMD 221 (415)
Q Consensus 197 ~lK~~L~~l~~~v~~vrd~l~~Lld 221 (415)
.+|++...++..+..+.+-+.++++
T Consensus 18 tvk~en~~i~~~ve~i~envk~ll~ 42 (55)
T PF05377_consen 18 TVKKENEEISESVEKIEENVKDLLS 42 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555443
No 83
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=29.56 E-value=1.6e+02 Score=28.28 Aligned_cols=15 Identities=7% Similarity=-0.261 Sum_probs=7.7
Q ss_pred chhHHHHHHHHHHHH
Q 014929 383 SAFHWVLVITGLAGC 397 (415)
Q Consensus 383 ~gf~~v~~~~~~~~~ 397 (415)
+.||.++++++.+.+
T Consensus 52 ~~~~~i~gi~~g~l~ 66 (224)
T PF13829_consen 52 WWYWLIIGILLGLLA 66 (224)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345555555554444
No 84
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=29.53 E-value=4.2e+02 Score=23.77 Aligned_cols=53 Identities=19% Similarity=0.306 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHhhHHHHH---HHHhccCChhhHH-HHHHHHHHHHHHHHHHHHHHH
Q 014929 162 CMSLDAQVKELGMEIYPVL---DELASSISTLNLE-HLRRLKGHLLALTQQVQKVHD 214 (415)
Q Consensus 162 ~~~Le~~~~~Le~~~~~~l---d~L~~~~~~~~Le-~l~~lK~~L~~l~~~v~~vrd 214 (415)
+..|..++..++.....+. ..|.+.+++..|. .+-.++.++..+..++.+++.
T Consensus 81 i~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 81 IKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5555666666666655543 4455667776664 577888899999999988886
No 85
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=29.28 E-value=9e+02 Score=27.60 Aligned_cols=14 Identities=43% Similarity=0.945 Sum_probs=8.0
Q ss_pred HHhhHHHHHHHHhc
Q 014929 172 LGMEIYPVLDELAS 185 (415)
Q Consensus 172 Le~~~~~~ld~L~~ 185 (415)
++..+.+.|+.+.+
T Consensus 230 l~~~~~~~L~~i~~ 243 (806)
T PF05478_consen 230 LGSNVYPALDSILD 243 (806)
T ss_pred HhhhhHHHHHHHHH
Confidence 55556666665544
No 86
>TIGR00833 actII Transport protein. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. This sub-family includes the S. coelicolor ActII3 protein, which may play a role in drug resistance, and the M. tuberculosis MmpL7 protein, which catalyzes export of an outer membrane lipid, phthiocerol dimycocerosate.
Probab=28.73 E-value=60 Score=37.45 Aligned_cols=58 Identities=7% Similarity=-0.118 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCCCCchhHHHHHHHHHHHHH-HHH--HHHHHHHhcCCCC
Q 014929 357 TFVATIFAVVTGVFGMNLKASVFDYPSAFHWVLVITGLAGCL-LYF--SFLFYFKHKKVFP 414 (415)
Q Consensus 357 Tii~~i~t~IaGifGMN~~~~pe~~~~gf~~v~~~~~~~~~~-l~~--~~~~~frrk~wl~ 414 (415)
.+.++..++++|+.+|.+...+.....|+...+++.+...++ +++ .++..+.|+.|++
T Consensus 850 ~I~~a~~~~~~~f~~l~~s~~~~l~~~G~~~a~gvl~~a~~v~~~l~Pall~l~g~~~wwp 910 (910)
T TIGR00833 850 VITAAGLVFAGTMAALASAQLTAIAQFGFTVGVGILLDTFIVRSVTVPALTLLLGRWIWWP 910 (910)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCC
Confidence 344555589999999999776655556776666554422221 111 3566688888875
No 87
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=28.66 E-value=1.3e+02 Score=27.09 Aligned_cols=40 Identities=25% Similarity=0.330 Sum_probs=32.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014929 299 NVEQLEMLLEAYFVVVDNTLSKLLSLKEYIDDTEDLINIK 338 (415)
Q Consensus 299 ~~eelE~LLe~Y~~~~d~~~~~l~~l~e~i~~~~d~~~~~ 338 (415)
+-+.+|.++..++++++.+.+..+.+++.++.+++.....
T Consensus 40 ~~~~lE~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 79 (151)
T PF14584_consen 40 DGKNLEDLLNELFDQIDELKEELEELEKRIEELEEKLRNC 79 (151)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3446788899999999999999999999888887776543
No 88
>PF00335 Tetraspannin: Tetraspanin family RDS_ROM1 subfamily; InterPro: IPR018499 A number of eukaryotic CD antigens have been shown to be related []. CD9 (also called DRAP-27, MRP-1 or p24) upregulates HB-EGF activity as a receptor for diphtheria toxin as well as its juxtacrine activity. CD9 mAbs modulate cell adhesion and migration and trigger platelet activation that is blocked by mAbs directed to the platelet Fc receptor CD32. In mice, CD9 mAb KMC8.8 has been shown to inhibit the production of myeloid cells in vitro and has a costimulatory activity for T cells. CD9 is a type III membrane protein, with four putative transmembrane domains. CD37 (or gp52-40) is involved in signal transduction and serves as a stable marker for malignancies derived from mature B cells, like B-CLL, HCL, and all types of B-NHL. CD63 transfection reduced melanoma cell motility on fibronectin, collagen and laminin, and reduced the growth and metastasis of melanoma cells in nude mice []. CD63 has been used as a marker for late endosomes and for primary melanomas. These proteins are all type II membrane proteins: they contain an N-terminal transmembrane (TM) domain, which acts both as a signal sequence and a membrane anchor, and 3 additional TM regions (hence the name 'TM4'). The sequences contain a number of conserved cysteine residues. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0016021 integral to membrane; PDB: 1IV5_A 1G8Q_A.
Probab=27.99 E-value=20 Score=32.21 Aligned_cols=19 Identities=11% Similarity=0.190 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhhc
Q 014929 353 LTAATFVATIFAVVTGVFG 371 (415)
Q Consensus 353 LtilTii~~i~t~IaGifG 371 (415)
++++.++.++..+.+|+|.
T Consensus 9 ~n~l~~l~g~~li~~g~~~ 27 (221)
T PF00335_consen 9 LNVLFLLLGLALIGVGIWL 27 (221)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444455556665
No 89
>PTZ00370 STEVOR; Provisional
Probab=27.55 E-value=71 Score=31.84 Aligned_cols=15 Identities=20% Similarity=0.534 Sum_probs=11.8
Q ss_pred HHHHHHHHHHhCcch
Q 014929 211 KVHDEIEHLMDDDGD 225 (415)
Q Consensus 211 ~vrd~l~~LlddD~d 225 (415)
.+-+-++++..|+.+
T Consensus 110 el~e~~ee~fg~~~~ 124 (296)
T PTZ00370 110 ELLETYEEMFGDESD 124 (296)
T ss_pred HHHHHHHHHhcCccc
Confidence 455678888888888
No 90
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=27.28 E-value=73 Score=31.75 Aligned_cols=14 Identities=14% Similarity=0.472 Sum_probs=10.1
Q ss_pred HHHHHHHHHhCcch
Q 014929 212 VHDEIEHLMDDDGD 225 (415)
Q Consensus 212 vrd~l~~LlddD~d 225 (415)
+-+-++.+..|+.+
T Consensus 112 l~e~~~~~fg~e~~ 125 (295)
T TIGR01478 112 LLEKYEEMFGDESH 125 (295)
T ss_pred HHHHHHHHhCCccc
Confidence 44567777888888
No 91
>TIGR02975 phageshock_pspG phage shock protein G. This protein previously was designated yjbO in E. coli. It is found only in genomes that have the phage shock operon (psp), but only rarely is encoded near other psp genes. The psp regulon is upregulated in response to a number of stress conditions, including ethanol, expression of the filamentous phage secretin protein IV and other secretins, and heat shock.
Probab=27.14 E-value=62 Score=24.94 Aligned_cols=19 Identities=26% Similarity=0.518 Sum_probs=14.1
Q ss_pred HHHHHHHHhhhcCCCCCCC
Q 014929 360 ATIFAVVTGVFGMNLKASV 378 (415)
Q Consensus 360 ~~i~t~IaGifGMN~~~~p 378 (415)
++.+.+++|.||+=++-.|
T Consensus 30 a~~vm~l~Gm~~lviKLLP 48 (64)
T TIGR02975 30 AVLFMALGGMFALMIKLLP 48 (64)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444889999999887654
No 92
>PF05360 YiaAB: yiaA/B two helix domain; InterPro: IPR008024 This domain consists of two transmembrane helices and a conserved linking section.
Probab=27.09 E-value=1.4e+02 Score=21.90 Aligned_cols=41 Identities=12% Similarity=0.057 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCCCCCCCCchhHHHHHHHHHHHH
Q 014929 353 LTAATFVATIFAVVTGVFGMNLKASVFDYPSAFHWVLVITGLAGC 397 (415)
Q Consensus 353 LtilTii~~i~t~IaGifGMN~~~~pe~~~~gf~~v~~~~~~~~~ 397 (415)
.+.++++.++..+..|+| |.+. ..+.-||+.+..++.+.+.
T Consensus 4 ~~~~~f~i~~~~~~iGl~--~~~~--~l~~KGy~~~~~l~~l~s~ 44 (53)
T PF05360_consen 4 QSWISFGISIVLMLIGLW--NAPL--DLSEKGYYAMGLLFLLFSA 44 (53)
T ss_pred HHHHHHHHHHHHHHHHHH--hCCC--CHHHHHHHHHHHHHHHHHH
Confidence 457788888889999999 4331 2233688766555544443
No 93
>PF01769 MgtE: Divalent cation transporter; InterPro: IPR006667 This entry represents the integral membrane part of the eubacterial MgtE family of magnesium transporters. Related regions are found also in archaebacterial and eukaryotic proteins. All the archaebacterial and eukaryotic examples have two copies of the region. This suggests that the eubacterial examples may act as dimers.Proteins in this entry probably transport Mg2+ or other divalent cations into the cell. The alignment contains two highly conserved aspartates that may be involved in cation binding.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport; PDB: 2YVX_D 2ZY9_A.
Probab=27.07 E-value=4e+02 Score=22.78 Aligned_cols=11 Identities=0% Similarity=-0.130 Sum_probs=5.9
Q ss_pred HHHHHHHhcCC
Q 014929 402 SFLFYFKHKKV 412 (415)
Q Consensus 402 ~~~~~frrk~w 412 (415)
.+-.+++|+||
T Consensus 99 ~l~~~~~k~g~ 109 (135)
T PF01769_consen 99 LLPIILWKIGL 109 (135)
T ss_dssp HHHHHHHHTT-
T ss_pred HHHHHHHhcCC
Confidence 34455667765
No 94
>PF14015 DUF4231: Protein of unknown function (DUF4231)
Probab=26.74 E-value=3.5e+02 Score=22.04 Aligned_cols=7 Identities=14% Similarity=0.534 Sum_probs=3.3
Q ss_pred HHhhhcC
Q 014929 366 VTGVFGM 372 (415)
Q Consensus 366 IaGifGM 372 (415)
++++++.
T Consensus 38 l~~~~~~ 44 (112)
T PF14015_consen 38 LASLSGL 44 (112)
T ss_pred HHHHhhc
Confidence 3444554
No 95
>PF11674 DUF3270: Protein of unknown function (DUF3270); InterPro: IPR021688 This family of proteins with unknown function appears to be restricted to Streptococcus.
Probab=26.48 E-value=2.4e+02 Score=23.28 Aligned_cols=45 Identities=18% Similarity=0.177 Sum_probs=27.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCchhHHHHHHHHH
Q 014929 342 VQNQLIQFELLLTAATFVATIFAVVTGVFGMNLKASVFDYPSAFHWVLVITGL 394 (415)
Q Consensus 342 ~rN~imki~l~LtilTii~~i~t~IaGifGMN~~~~pe~~~~gf~~v~~~~~~ 394 (415)
+..+++-+ +.++..+++..+++||-=..+|| .+++|.+.++++.+
T Consensus 35 kL~ELlFF-~nIA~FcI~tvlfsFvfLs~kl~-------t~~Af~~Ai~~Sl~ 79 (90)
T PF11674_consen 35 KLKELLFF-ANIAFFCIFTVLFSFVFLSLKLN-------TFWAFPLAILISLA 79 (90)
T ss_pred hHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhh-------HHHHHHHHHHHHHH
Confidence 44444433 44667777777888887666665 23677666555433
No 96
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=26.46 E-value=1.4e+02 Score=32.32 Aligned_cols=78 Identities=19% Similarity=0.219 Sum_probs=51.9
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHh--hhhhhHH-HHHHHHHHHHHHHHHHHHHHHhhhc
Q 014929 296 NRENVEQLEMLLEAYFVVVDNTLSKLLSLKEYIDDTEDLI-NIKL--GNVQNQL-IQFELLLTAATFVATIFAVVTGVFG 371 (415)
Q Consensus 296 ~~~~~eelE~LLe~Y~~~~d~~~~~l~~l~e~i~~~~d~~-~~~L--d~~rN~i-mki~l~LtilTii~~i~t~IaGifG 371 (415)
+.+..+-+|+-|...+.+.+.+...=.+|+.+++.+...- ...+ -..||+- .| .+.+|+...+||+-.||
T Consensus 300 KKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~~kvpsp~~~~qKk~R------kvvaimv~maFi~f~~~ 373 (655)
T KOG4343|consen 300 KKEYMLGLEARLQALLSENEQLKKENATLKRQLDELVSENQRLKVPSPKGRNQKKKR------KVVAIMVVMAFIIFNYG 373 (655)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCcccccCCCcccccccch------hhhhHHHHHHHHHHhcc
Confidence 4567788999999999998888888888888777664311 0111 1233332 33 44555555678888888
Q ss_pred --CCCCCCCC
Q 014929 372 --MNLKASVF 379 (415)
Q Consensus 372 --MN~~~~pe 379 (415)
||+.+.++
T Consensus 374 ~p~ni~nnln 383 (655)
T KOG4343|consen 374 SPMNILNNLN 383 (655)
T ss_pred CcccccCCcc
Confidence 99987764
No 97
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.44 E-value=1.2e+02 Score=31.03 Aligned_cols=59 Identities=10% Similarity=0.154 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCCCCCC---chhHHHHHHHHHHHHHHHHHHHHHHH--hcCCC
Q 014929 355 AATFVATIFAVVTGVFGMNLKASVFDYP---SAFHWVLVITGLAGCLLYFSFLFYFK--HKKVF 413 (415)
Q Consensus 355 ilTii~~i~t~IaGifGMN~~~~pe~~~---~gf~~v~~~~~~~~~~l~~~~~~~fr--rk~wl 413 (415)
++-++.+++.++.=+|=|+..-+-.... .||...+.+.+++=+++|+++|+..+ ..=|+
T Consensus 195 ~~fvl~tlaivLFPLWP~~mR~gvyY~sig~~gfl~~IlvLaIvRlILF~I~~il~~g~~g~W~ 258 (372)
T KOG2927|consen 195 VLFVLVTLAIVLFPLWPRRMRQGVYYLSIGAGGFLAFILVLAIVRLILFGITWILTGGKHGFWL 258 (372)
T ss_pred HHHHHHHHHHHhcccCcHHHhcceeeeecchhHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEe
Confidence 3445555556666677777765443222 23443333333334567777777766 44443
No 98
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=26.41 E-value=6e+02 Score=26.80 Aligned_cols=27 Identities=11% Similarity=0.111 Sum_probs=14.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 014929 384 AFHWVLVITGLAGCLLYFSFLFYFKHKKVF 413 (415)
Q Consensus 384 gf~~v~~~~~~~~~~l~~~~~~~frrk~wl 413 (415)
+|..++.+.+++|+ ++++...|+.||.
T Consensus 211 ~~l~lL~~~lviC~---~~l~gl~r~Sr~~ 237 (418)
T cd07912 211 AYLGLLSLLLVICL---VLLVGLARHSRCL 237 (418)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHhcchH
Confidence 44444444444454 3456667877773
No 99
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=26.22 E-value=4.1e+02 Score=24.55 Aligned_cols=55 Identities=22% Similarity=0.338 Sum_probs=29.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014929 149 FEFRALELALELTCMSLDAQVKELGMEIYPVLDELASSISTLNLEHLRRLKGHLLALTQQVQKVHDEIEHL 219 (415)
Q Consensus 149 FE~raLE~iL~~~~~~Le~~~~~Le~~~~~~ld~L~~~~~~~~Le~l~~lK~~L~~l~~~v~~vrd~l~~L 219 (415)
.-|.=|....+.+-..|+.++++++.++ +++-.+.+++..|+.++.-+...|+.+
T Consensus 109 ~tf~rL~~~Vd~~~~eL~~eI~~L~~~i----------------~~le~~~~~~k~LrnKa~~L~~eL~~F 163 (171)
T PF04799_consen 109 STFARLCQQVDQTKNELEDEIKQLEKEI----------------QRLEEIQSKSKTLRNKANWLESELERF 163 (171)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666666665554 333334445555555555555555544
No 100
>PRK04325 hypothetical protein; Provisional
Probab=26.07 E-value=2.2e+02 Score=22.34 Aligned_cols=50 Identities=16% Similarity=0.251 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhhHHHHHHHHhccCChhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014929 164 SLDAQVKELGMEIYPVLDELASSISTLNL-EHLRRLKGHLLALTQQVQKVHDEIEHL 219 (415)
Q Consensus 164 ~Le~~~~~Le~~~~~~ld~L~~~~~~~~L-e~l~~lK~~L~~l~~~v~~vrd~l~~L 219 (415)
.+++++.+||..+.-..+.+.. | +-|.+-.+.+..|++.++-+.+-+..+
T Consensus 6 ~~e~Ri~~LE~klAfQE~tIe~------LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~ 56 (74)
T PRK04325 6 EMEDRITELEIQLAFQEDLIDG------LNATVARQQQTLDLLQAQLRLLYQQMRDA 56 (74)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555666666665544333321 2 123344445555555555555444443
No 101
>PF13042 DUF3902: Protein of unknown function (DUF3902)
Probab=25.87 E-value=2.3e+02 Score=25.69 Aligned_cols=74 Identities=12% Similarity=0.200 Sum_probs=39.2
Q ss_pred HHHHHHhhhhh-hHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 014929 333 DLINIKLGNVQ-NQLIQFELLLTAATFVATIFAVVTGVFGMNLKASVFDYPSAFHWVLVITGLAGCLLYFSFLFYFKHK 410 (415)
Q Consensus 333 d~~~~~Ld~~r-N~imki~l~LtilTii~~i~t~IaGifGMN~~~~pe~~~~gf~~v~~~~~~~~~~l~~~~~~~frrk 410 (415)
+++..+-..++ +++++ +-++.|+.+++..++.|++=++... ...+-..++|+.....-...++....+.+.++|
T Consensus 51 ~Ly~~~ty~k~~~k~l~---kt~~iSF~~avLGiifgI~~qll~~-WslsiM~wYWll~LlLyl~tiisLViLVf~n~k 125 (161)
T PF13042_consen 51 DLYCKNTYDKKFSKVLI---KTNVISFNFAVLGIIFGIIHQLLGK-WSLSIMMWYWLLILLLYLITIISLVILVFVNRK 125 (161)
T ss_pred HHhcccchHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 34444443344 44433 4677888888889999998887632 112224455554433333222333445554544
No 102
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=25.53 E-value=3.6e+02 Score=27.98 Aligned_cols=58 Identities=19% Similarity=0.287 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014929 159 ELTCMSLDAQVKELGMEIYPVLDELASSISTLNLEHLRRLKGHLLALTQQVQKVHDEIEH 218 (415)
Q Consensus 159 ~~~~~~Le~~~~~Le~~~~~~ld~L~~~~~~~~Le~l~~lK~~L~~l~~~v~~vrd~l~~ 218 (415)
+.+...++.++..++.++..+.+.|.... ..-.++..+++++..+.+++..+.+.+..
T Consensus 241 ~~~~~~l~~~~~~~~~~i~~l~~~l~~~~--k~~~k~~~~~~q~~~~~k~~~~~~~~~~~ 298 (406)
T PF02388_consen 241 KEYLESLQEKLEKLEKEIEKLEEKLEKNP--KKKNKLKELEEQLASLEKRIEEAEELIAE 298 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-T--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCc--chhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44667788888888888888777776655 33455677777777777777765555433
No 103
>PF09990 DUF2231: Predicted membrane protein (DUF2231); InterPro: IPR019251 This domain, found in various hypothetical bacterial proteins, has no known function.
Probab=25.10 E-value=2e+02 Score=23.54 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCC
Q 014929 353 LTAATFVATIFAVVTGVFGMNLK 375 (415)
Q Consensus 353 LtilTii~~i~t~IaGifGMN~~ 375 (415)
+-++.+++++++.++|+.=+...
T Consensus 8 ll~~G~l~~~~A~~~G~~d~~~~ 30 (104)
T PF09990_consen 8 LLVLGLLGAIVAVLTGFVDLLTV 30 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC
Confidence 44667777777888888877765
No 104
>TIGR02106 cyd_oper_ybgT cyd operon protein YbgT. This model describes a very small (as short as 33 amino acids) protein of unknown function, essentially always found in an operon with CydAB, subunits of the cytochrome d terminal oxidase. It begins with an aromatic motif MWYFXW and appears to contain a membrane-spanning helix. This protein appears to be restricted to the Proteobacteria and exist in a single copy only. We suggest it may be a membrane subunit of the terminal oxidase. The family is named after the E. coli member YbgT. This model excludes the apparently related protein YccB.
Probab=24.98 E-value=1.4e+02 Score=19.68 Aligned_cols=16 Identities=19% Similarity=0.254 Sum_probs=8.4
Q ss_pred hhHHHHHHHHHHHHHH
Q 014929 384 AFHWVLVITGLAGCLL 399 (415)
Q Consensus 384 gf~~v~~~~~~~~~~l 399 (415)
-|-|++++..++++.+
T Consensus 3 YfaWilG~~lA~~~~v 18 (30)
T TIGR02106 3 YFAWILGTLLACAFGV 18 (30)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 4556666555544433
No 105
>PF07086 DUF1352: Protein of unknown function (DUF1352); InterPro: IPR009787 This family consists of several hypothetical eukaryotic proteins of around 190 residues in length. The function of this family is unknown.
Probab=24.85 E-value=5.8e+02 Score=23.85 Aligned_cols=36 Identities=11% Similarity=0.126 Sum_probs=24.7
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 014929 336 NIKLGNVQNQLIQFELLLTAATFVATIFAVVTGVFGM 372 (415)
Q Consensus 336 ~~~Ld~~rN~imki~l~LtilTii~~i~t~IaGifGM 372 (415)
--.++-+||++..+.+.. +.+.+++++.++.|.++|
T Consensus 87 ~G~~s~~rN~i~~l~~y~-~~~~~~gl~pl~~g~~~~ 122 (186)
T PF07086_consen 87 LGLLSLRRNNISLLRLYM-IGSSLFGLLPLIYGAMYY 122 (186)
T ss_pred HHHHhcccchHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 334677999998865544 556666777777777764
No 106
>KOG2678 consensus Predicted membrane protein [Function unknown]
Probab=24.70 E-value=95 Score=29.87 Aligned_cols=25 Identities=12% Similarity=0.256 Sum_probs=15.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 014929 384 AFHWVLVITGLAGCLLYFSFLFYFK 408 (415)
Q Consensus 384 gf~~v~~~~~~~~~~l~~~~~~~fr 408 (415)
+++|+-+.|+++.++.|+.|+++++
T Consensus 214 ~s~wf~~~miI~v~~sFVsMiliiq 238 (244)
T KOG2678|consen 214 LSYWFYITMIIFVILSFVSMILIIQ 238 (244)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556656666666667777776654
No 107
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=24.64 E-value=1.6e+02 Score=28.85 Aligned_cols=13 Identities=15% Similarity=0.314 Sum_probs=9.3
Q ss_pred HHHHhhhcCCCCC
Q 014929 364 AVVTGVFGMNLKA 376 (415)
Q Consensus 364 t~IaGifGMN~~~ 376 (415)
++++.+|+|--..
T Consensus 54 ~Ll~~v~t~~~~~ 66 (284)
T PF12805_consen 54 TLLVAVYTMAGPS 66 (284)
T ss_pred HHHHHHHHHhCCC
Confidence 7777788886554
No 108
>COG3162 Predicted membrane protein [Function unknown]
Probab=24.58 E-value=4.3e+02 Score=22.28 Aligned_cols=62 Identities=6% Similarity=-0.066 Sum_probs=29.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHH-HHHHhhhc--CCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 014929 341 NVQNQLIQFELLLTAATFVATIF-AVVTGVFG--MNLKASVFDYPSAFHWVLVITGLAGCLLYFSFLFYFKH 409 (415)
Q Consensus 341 ~~rN~imki~l~LtilTii~~i~-t~IaGifG--MN~~~~pe~~~~gf~~v~~~~~~~~~~l~~~~~~~frr 409 (415)
.+||+..-. +|++.++.-+. -+++++.- ||.+..+..-.+|+++.++.++..- ++..+|.||
T Consensus 20 ~kr~~Fa~~---ltl~flv~Y~~filLiaf~~~~l~tp~~~~~Vt~Gip~gvg~fv~tf----Vlt~IYv~r 84 (102)
T COG3162 20 RKRRRFAVP---LTLIFLVVYFGFILLIAFAPGWLATPLFGASVTRGIPFGVGVFVMTF----VLTGIYVRR 84 (102)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHhhHHHhcCcccCCceehhHhHHHHHHHHHH----HHHHHHhhH
Confidence 356665553 44444433333 44455544 5555444422267666555443322 255555554
No 109
>PF04504 DUF573: Protein of unknown function, DUF573; InterPro: IPR007592 This is a family of uncharacterised proteins.
Probab=24.46 E-value=1.2e+02 Score=25.09 Aligned_cols=26 Identities=27% Similarity=0.404 Sum_probs=15.0
Q ss_pred HhccCChhhH-HHHHHHHHHHHHHHHH
Q 014929 183 LASSISTLNL-EHLRRLKGHLLALTQQ 208 (415)
Q Consensus 183 L~~~~~~~~L-e~l~~lK~~L~~l~~~ 208 (415)
|...++..+| +.|++||++......+
T Consensus 45 l~~~~s~~Ql~~KirrLK~Ky~~~~~k 71 (98)
T PF04504_consen 45 LSFDVSKNQLYDKIRRLKKKYRNAVKK 71 (98)
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHhhh
Confidence 3334554444 6788888776654444
No 110
>PRK13021 secF preprotein translocase subunit SecF; Reviewed
Probab=24.10 E-value=2.2e+02 Score=28.47 Aligned_cols=6 Identities=33% Similarity=0.662 Sum_probs=3.1
Q ss_pred EcCCCC
Q 014929 53 IDQDGN 58 (415)
Q Consensus 53 id~~g~ 58 (415)
||-.|-
T Consensus 37 IDFtGG 42 (297)
T PRK13021 37 LDFTGG 42 (297)
T ss_pred eeecCc
Confidence 555554
No 111
>PRK15326 type III secretion system needle complex protein PrgI; Provisional
Probab=24.05 E-value=3.9e+02 Score=21.59 Aligned_cols=50 Identities=20% Similarity=0.165 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHhccCChh-hHHHHHHHHHHHHHHH
Q 014929 157 ALELTCMSLDAQVKELGMEIYPVLDELASSISTL-NLEHLRRLKGHLLALT 206 (415)
Q Consensus 157 iL~~~~~~Le~~~~~Le~~~~~~ld~L~~~~~~~-~Le~l~~lK~~L~~l~ 206 (415)
-|+.+...++..++++.+++..++++|...++.. .|-++...-.+.+-++
T Consensus 8 ~l~~v~~~~~~~a~~~~~~l~~Al~~l~~~pdnP~~LA~~Qa~l~eyn~~R 58 (80)
T PRK15326 8 YLDDVSAKFDTGVDNLQTQVTEALDKLAAKPSDPALLAAYQSKLSEYNLYR 58 (80)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHH
Confidence 5688888999999999999999999998887754 3444444444444433
No 112
>PF14127 DUF4294: Domain of unknown function (DUF4294)
Probab=24.05 E-value=5.5e+02 Score=23.36 Aligned_cols=13 Identities=31% Similarity=0.567 Sum_probs=11.6
Q ss_pred HHHHhhhcCCCCC
Q 014929 364 AVVTGVFGMNLKA 376 (415)
Q Consensus 364 t~IaGifGMN~~~ 376 (415)
-.+|++||.|++.
T Consensus 125 q~~A~~Fg~sLK~ 137 (157)
T PF14127_consen 125 QTFAWLFGISLKK 137 (157)
T ss_pred HHHHHHhCccccc
Confidence 7889999999975
No 113
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=24.03 E-value=7.4e+02 Score=24.83 Aligned_cols=51 Identities=14% Similarity=0.136 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Q 014929 299 NVEQLEMLLEAYFVVVDNTLSKLLSLKEYIDDTEDLINIKLGNVQNQLIQF 349 (415)
Q Consensus 299 ~~eelE~LLe~Y~~~~d~~~~~l~~l~e~i~~~~d~~~~~Ld~~rN~imki 349 (415)
..++++.-++..-..++.+-.....+.+.|..++...+-.-.-.+.++.++
T Consensus 231 ~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~L 281 (325)
T PF08317_consen 231 ELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKRL 281 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 334444444444455566666666666666666666554444445555554
No 114
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=23.97 E-value=1.1e+03 Score=26.74 Aligned_cols=37 Identities=19% Similarity=0.331 Sum_probs=31.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchh
Q 014929 190 LNLEHLRRLKGHLLALTQQVQKVHDEIEHLMDDDGDM 226 (415)
Q Consensus 190 ~~Le~l~~lK~~L~~l~~~v~~vrd~l~~LlddD~dm 226 (415)
..+++|..++.+...++.+...+.+-++++.+.-+.+
T Consensus 576 ~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L 612 (717)
T PF10168_consen 576 QQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKL 612 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888899999999999999999898888776655
No 115
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=23.79 E-value=5e+02 Score=22.81 Aligned_cols=65 Identities=17% Similarity=0.245 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCChh---hHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 014929 155 ELALELTCMSLDAQVKELGMEIYPVLDELASSISTL---NLEHL-RRLKGHLLALTQQVQKVHDEIEHL 219 (415)
Q Consensus 155 E~iL~~~~~~Le~~~~~Le~~~~~~ld~L~~~~~~~---~Le~l-~~lK~~L~~l~~~v~~vrd~l~~L 219 (415)
+..++.+-..+...+.++-..+....|.++..+... .|.+| .+-|+.+..|..+|..+...+++|
T Consensus 60 ~e~~~~~~~~~~~~~~~~~~~~~~~~dklE~~fd~rV~~aL~rLgvPs~~dv~~L~~rId~L~~~v~~l 128 (132)
T PF05597_consen 60 EEQVEEARDQVKSRVDDVKERATGQWDKLEQAFDERVARALNRLGVPSRKDVEALSARIDQLTAQVERL 128 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444444444444444332222 12222 123556666666666666666555
No 116
>PRK00846 hypothetical protein; Provisional
Probab=23.38 E-value=2.7e+02 Score=22.30 Aligned_cols=15 Identities=27% Similarity=0.346 Sum_probs=8.4
Q ss_pred HHHHHHHHHHhhHHH
Q 014929 164 SLDAQVKELGMEIYP 178 (415)
Q Consensus 164 ~Le~~~~~Le~~~~~ 178 (415)
.+++++.+||..+.-
T Consensus 10 ~le~Ri~~LE~rlAf 24 (77)
T PRK00846 10 ALEARLVELETRLSF 24 (77)
T ss_pred hHHHHHHHHHHHHHH
Confidence 455566666665543
No 117
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=23.35 E-value=1.3e+03 Score=27.49 Aligned_cols=6 Identities=50% Similarity=1.309 Sum_probs=4.5
Q ss_pred HHhhhc
Q 014929 366 VTGVFG 371 (415)
Q Consensus 366 IaGifG 371 (415)
+.|+||
T Consensus 514 ~~Gv~G 519 (1163)
T COG1196 514 LPGVYG 519 (1163)
T ss_pred CCCccc
Confidence 677777
No 118
>COG0004 AmtB Ammonia permease [Inorganic ion transport and metabolism]
Probab=23.22 E-value=2e+02 Score=30.14 Aligned_cols=50 Identities=18% Similarity=0.199 Sum_probs=30.9
Q ss_pred HHHHHhhhcCCCCCCCCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 014929 363 FAVVTGVFGMNLKASVFDYP-SAFHWVLVITGLAGCLLYFSFLFYFKHKKV 412 (415)
Q Consensus 363 ~t~IaGifGMN~~~~pe~~~-~gf~~v~~~~~~~~~~l~~~~~~~frrk~w 412 (415)
+-+..|+||-|-.+-...+. .++-++...+...+..+.....-|++++||
T Consensus 205 ~lLWfGWfGFN~GSal~~~~~a~~a~~nT~lAaa~g~l~w~~~e~~~~~Kp 255 (409)
T COG0004 205 ALLWFGWFGFNAGSALAANGVAALAFVNTNLAAAAGALGWMLIEWLRNGKP 255 (409)
T ss_pred HHHHHHHccCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 35678999999988766554 334344444444444455556666777775
No 119
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=22.91 E-value=3.9e+02 Score=22.80 Aligned_cols=22 Identities=23% Similarity=0.363 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 014929 192 LEHLRRLKGHLLALTQQVQKVH 213 (415)
Q Consensus 192 Le~l~~lK~~L~~l~~~v~~vr 213 (415)
-+.|..|+.++..|..++..+.
T Consensus 95 k~ev~~L~~RI~~Le~~l~~l~ 116 (118)
T TIGR01837 95 REEIEALSAKIEQLAVQVEELR 116 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4566666777777777766654
No 120
>KOG3176 consensus Predicted alpha-helical protein, potentially involved in replication/repair [Replication, recombination and repair]
Probab=22.79 E-value=6.9e+02 Score=24.01 Aligned_cols=90 Identities=17% Similarity=0.245 Sum_probs=54.0
Q ss_pred hhHHHHHHHHhccCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCChhhHHHHHHHHHHHHHHH
Q 014929 127 VQYYLELCKRLQTNKDQADDLPFEFRALELALELTCMSLDAQVKELGMEIYPVLDELASSISTLNLEHLRRLKGHLLALT 206 (415)
Q Consensus 127 ~~~~~~L~~rL~~~~~~~~~LpFE~raLE~iL~~~~~~Le~~~~~Le~~~~~~ld~L~~~~~~~~Le~l~~lK~~L~~l~ 206 (415)
.+.++.|++.-++..-.++-|||+..++|.+++.+-. .-+.+|..+.. ..|...+-.-.|+|++-+=+ ..++
T Consensus 25 ~~~le~L~~aW~NEk~APeLLp~~~elve~~ldqIe~----~eE~i~~~a~~--~dlr~~~~qmELERvkfvlr--SYlR 96 (223)
T KOG3176|consen 25 EEDLEDLETAWQNEKCAPELLPYALELVERLLDQIEH----MEETIERKASN--KDLRVSLHQMELERVKFVLR--SYLR 96 (223)
T ss_pred HHHHHHHHHHHhhhccChhhcCChHHHHHHHHHHHHH----HHHHHHHhccc--ccHHHHHHHHHHHHHHHHHH--HHHH
Confidence 4667888888887766777899998888888876433 11122211110 01222333445777764433 3456
Q ss_pred HHHHHHHHHHHHHHhCcc
Q 014929 207 QQVQKVHDEIEHLMDDDG 224 (415)
Q Consensus 207 ~~v~~vrd~l~~LlddD~ 224 (415)
-|++++-.-..++++.++
T Consensus 97 cRL~KIekf~~~~ln~ee 114 (223)
T KOG3176|consen 97 CRLQKIEKFLQHILNQEE 114 (223)
T ss_pred HHHHHHHhhhHHhhcchh
Confidence 778887777777776654
No 121
>PF01031 Dynamin_M: Dynamin central region; InterPro: IPR000375 Dynamin is a microtubule-associated force-producing protein of 100 Kd which is involved in the production of microtubule bundles. At the N terminus of dynamin is a GTPase domain (see IPR001401 from INTERPRO), and at the C terminus is a PH domain (see IPR001849 from INTERPRO). Between these two domains lies a central region of unknown function, which this entry represents.; GO: 0005525 GTP binding; PDB: 3ZVR_A 2AKA_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D 1JWY_B 1JX2_B 3SZR_A ....
Probab=22.79 E-value=2.6e+02 Score=27.40 Aligned_cols=92 Identities=16% Similarity=0.205 Sum_probs=51.1
Q ss_pred HHHHHHHhccCCC--CCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCChhhHHHHHHHHHHHHH---
Q 014929 130 YLELCKRLQTNKD--QADDLPFEFRALELALELTCMSLDAQVKELGMEIYPVLDELASSISTLNLEHLRRLKGHLLA--- 204 (415)
Q Consensus 130 ~~~L~~rL~~~~~--~~~~LpFE~raLE~iL~~~~~~Le~~~~~Le~~~~~~ld~L~~~~~~~~Le~l~~lK~~L~~--- 204 (415)
.++++.-+++..| .+...|| .++|.++......++.-....-+.++..+..+..++-...+.+--.|+..+..
T Consensus 171 ~~eI~~~i~~~~G~elp~f~p~--~afe~Li~~~i~~l~~Pa~~cv~~V~~~l~~i~~~~~~~~~~~fp~L~~~i~~~v~ 248 (295)
T PF01031_consen 171 DEEIRTAIRNSRGRELPGFVPE--SAFESLIRKQIEKLEEPALQCVEEVHEELQRIVEQVLEKEFERFPNLKEAIKEAVQ 248 (295)
T ss_dssp HHHHHHHHHH--S-SSS-SCCH--HHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHCHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccccccchhH--HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhcchhcCCchHHHHHHHHHHH
Confidence 3456666665443 3445677 59999998888877766666666666655555544333344443334443332
Q ss_pred --HHHHHHHHHHHHHHHHhCc
Q 014929 205 --LTQQVQKVHDEIEHLMDDD 223 (415)
Q Consensus 205 --l~~~v~~vrd~l~~LlddD 223 (415)
+.+...+.++.++.+++.+
T Consensus 249 ~~l~~~~~~a~~~i~~li~~E 269 (295)
T PF01031_consen 249 QLLEECREPAKEMIENLIDME 269 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 3444455556666666544
No 122
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=22.76 E-value=4.8e+02 Score=22.47 Aligned_cols=10 Identities=20% Similarity=0.348 Sum_probs=4.8
Q ss_pred hhhhhHHHHH
Q 014929 340 GNVQNQLIQF 349 (415)
Q Consensus 340 d~~rN~imki 349 (415)
+++-|++=-+
T Consensus 5 ~~KiN~~R~~ 14 (114)
T PF11023_consen 5 SSKINKIRTF 14 (114)
T ss_pred hhHHHHHHHH
Confidence 4455555443
No 123
>COG4062 MtrB Tetrahydromethanopterin S-methyltransferase, subunit B [Coenzyme metabolism]
Probab=22.58 E-value=97 Score=26.05 Aligned_cols=22 Identities=27% Similarity=0.356 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 014929 313 VVDNTLSKLLSLKEYIDDTEDL 334 (415)
Q Consensus 313 ~~d~~~~~l~~l~e~i~~~~d~ 334 (415)
+++-+.++++.+....++++..
T Consensus 32 dv~pi~Eqi~kLe~~vddl~~s 53 (108)
T COG4062 32 DVDPIEEQIKKLETLVDDLENS 53 (108)
T ss_pred eccHHHHHHHHHHHHHHHHHhc
Confidence 4566777777777766666544
No 124
>PRK04406 hypothetical protein; Provisional
Probab=22.41 E-value=3.9e+02 Score=21.07 Aligned_cols=52 Identities=12% Similarity=0.236 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHhccCChhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014929 162 CMSLDAQVKELGMEIYPVLDELASSISTLNL-EHLRRLKGHLLALTQQVQKVHDEIEHL 219 (415)
Q Consensus 162 ~~~Le~~~~~Le~~~~~~ld~L~~~~~~~~L-e~l~~lK~~L~~l~~~v~~vrd~l~~L 219 (415)
...+++++.+||..+....+.+.. | +-|.+-.+.+..|++.++.+++-+..+
T Consensus 6 ~~~le~Ri~~LE~~lAfQE~tIe~------LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 58 (75)
T PRK04406 6 IEQLEERINDLECQLAFQEQTIEE------LNDALSQQQLLITKMQDQMKYVVGKVKNM 58 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345667777777776554443321 2 223444555556666655555544443
No 125
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=22.22 E-value=5e+02 Score=22.17 Aligned_cols=21 Identities=24% Similarity=0.389 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 014929 195 LRRLKGHLLALTQQVQKVHDE 215 (415)
Q Consensus 195 l~~lK~~L~~l~~~v~~vrd~ 215 (415)
+..++.++.+|+++|+.+.+.
T Consensus 85 ~~~l~~rvd~Lerqv~~Lenk 105 (108)
T COG3937 85 MDELTERVDALERQVADLENK 105 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555555666666555443
No 126
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=21.49 E-value=3.3e+02 Score=31.62 Aligned_cols=10 Identities=0% Similarity=0.185 Sum_probs=6.7
Q ss_pred HHHHhhhcCC
Q 014929 364 AVVTGVFGMN 373 (415)
Q Consensus 364 t~IaGifGMN 373 (415)
+.+.++|||.
T Consensus 858 ~~~~~~~~~~ 867 (902)
T PRK10517 858 SPLASYLQLQ 867 (902)
T ss_pred HHHHHhhCCc
Confidence 3567788775
No 127
>PRK14749 hypothetical protein; Provisional
Probab=21.47 E-value=2.4e+02 Score=18.52 Aligned_cols=23 Identities=9% Similarity=0.059 Sum_probs=12.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHH
Q 014929 383 SAFHWVLVITGLAGCLLYFSFLF 405 (415)
Q Consensus 383 ~gf~~v~~~~~~~~~~l~~~~~~ 405 (415)
|-|-|++++.++++..+.-++++
T Consensus 2 WYfaWiLG~~lAc~f~ilna~w~ 24 (30)
T PRK14749 2 WYLLWFVGILLMCSLSTLVLVWL 24 (30)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667777665555544333433
No 128
>COG3274 Predicted O-acyltransferase [General function prediction only]
Probab=21.42 E-value=1.5e+02 Score=30.19 Aligned_cols=47 Identities=23% Similarity=0.161 Sum_probs=23.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCC-CCchhHH
Q 014929 340 GNVQNQLIQFELLLTAATFVATIFAVVTGVFGMNLKASVFD-YPSAFHW 387 (415)
Q Consensus 340 d~~rN~imki~l~LtilTii~~i~t~IaGifGMN~~~~pe~-~~~gf~~ 387 (415)
..+.++-+++...-+.+-++.+++|++.-.+ ||-...-.. .+|.|.-
T Consensus 194 ~~~~~~~~~~~~~a~~l~~~~~~~t~v~t~~-~~~~~~~~~~~~Y~y~~ 241 (332)
T COG3274 194 GTRQTQGKKISRLALALFVLGVIFTFVGTYK-LNQYGQNFDDTDYFYCG 241 (332)
T ss_pred HHHHhccchHHHHHHHHHHHHHHHHHHHHHH-HHHhccccccccccccc
Confidence 3344444433333444455555666655444 887655443 4466633
No 129
>PF04011 LemA: LemA family; InterPro: IPR007156 The members of this family are related to the LemA protein P71452 from SWISSPROT. The exact molecular function of this protein is uncertain. It is predicted to be a transmembrane protein with an extracellular N terminus [].; PDB: 2ETD_A.
Probab=21.40 E-value=6.2e+02 Score=23.00 Aligned_cols=47 Identities=17% Similarity=0.249 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 014929 316 NTLSKLLSLKEYIDDTEDLINIKLGNVQNQLIQFELLLTAATFVATIFAVVTGVFGMNL 374 (415)
Q Consensus 316 ~~~~~l~~l~e~i~~~~d~~~~~Ld~~rN~imki~l~LtilTii~~i~t~IaGifGMN~ 374 (415)
.+...++...+.|......++......-+.+-+ -|..++||+||+.=
T Consensus 122 ~l~~~l~~~E~~I~~aR~~YN~av~~yN~~i~~------------FP~~lvA~~~gf~~ 168 (186)
T PF04011_consen 122 QLMAQLEETENRIAAARRAYNDAVRDYNTAIRQ------------FPTNLVAGIFGFKP 168 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------------ccHHHHHHhcCCCc
Confidence 345555555665555555555544333332222 24499999999653
No 130
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=21.34 E-value=1.2e+03 Score=26.42 Aligned_cols=67 Identities=18% Similarity=0.254 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014929 154 LELALELTCMSLDAQVKELGMEIYPVLDELASSISTLNLEHLRRLKGHLLALTQQVQKVHDEIEHLMD 221 (415)
Q Consensus 154 LE~iL~~~~~~Le~~~~~Le~~~~~~ld~L~~~~~~~~Le~l~~lK~~L~~l~~~v~~vrd~l~~Lld 221 (415)
+|+.+......|.-...++...++.....+...+ ++.+.++..++.+...|+.++..|++.+.++-.
T Consensus 32 ~d~~ls~l~~kLql~~qe~~~~le~~~~q~l~~~-Pr~~~ev~~l~~ea~~L~~~~~~v~~~~~~~e~ 98 (766)
T PF10191_consen 32 ADAHLSSLVMKLQLYSQEVNASLEETSQQALQRV-PRVLREVDRLRQEAASLQEQMASVQEEIKAVEQ 98 (766)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 3444555555555444444444443333333332 345778899999999999999999999988644
No 131
>PRK02119 hypothetical protein; Provisional
Probab=21.23 E-value=4.1e+02 Score=20.81 Aligned_cols=50 Identities=18% Similarity=0.240 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhhHHHHHHHHhccCChhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014929 164 SLDAQVKELGMEIYPVLDELASSISTLNL-EHLRRLKGHLLALTQQVQKVHDEIEHL 219 (415)
Q Consensus 164 ~Le~~~~~Le~~~~~~ld~L~~~~~~~~L-e~l~~lK~~L~~l~~~v~~vrd~l~~L 219 (415)
.+++++.+||..+....+.+.. | +-|.+-.+.+..+++.++.+++-+.++
T Consensus 6 ~~e~Ri~~LE~rla~QE~tie~------LN~~v~~Qq~~id~L~~ql~~L~~rl~~~ 56 (73)
T PRK02119 6 NLENRIAELEMKIAFQENLLEE------LNQALIEQQFVIDKMQVQLRYMANKLKDM 56 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4666777777766554443321 2 223444555556666655555554443
No 132
>PF13994 PgaD: PgaD-like protein
Probab=21.18 E-value=5.6e+02 Score=22.35 Aligned_cols=13 Identities=15% Similarity=0.352 Sum_probs=10.7
Q ss_pred HHHHhhhcCCCCC
Q 014929 364 AVVTGVFGMNLKA 376 (415)
Q Consensus 364 t~IaGifGMN~~~ 376 (415)
|++.+++|.+...
T Consensus 37 ~ll~~ll~~~~~~ 49 (138)
T PF13994_consen 37 TLLAWLLGLHLFY 49 (138)
T ss_pred HHHHHHHcccccc
Confidence 6888999998764
No 133
>COG4420 Predicted membrane protein [Function unknown]
Probab=20.93 E-value=4.8e+02 Score=24.50 Aligned_cols=39 Identities=15% Similarity=0.204 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhHHh
Q 014929 191 NLEHLRRLKGHLLALTQQVQKVHDEIEHLMDDDGDMAAM 229 (415)
Q Consensus 191 ~Le~l~~lK~~L~~l~~~v~~vrd~l~~LlddD~dm~~m 229 (415)
..+.|..++..+-.++....++|+.+.++.+.+.+...+
T Consensus 139 l~~kLd~lr~~lg~~~~~l~~lre~l~~i~~~~~~~~~~ 177 (191)
T COG4420 139 LHEKLDELRLDLGYVRDELDDLRELLAEIEPELADEEAL 177 (191)
T ss_pred HHHHHHHHHHhcchhhhchHHHHHHHHHhCcccccHHHH
Confidence 456677788888888888999999999998877776553
No 134
>PF01957 NfeD: NfeD-like C-terminal, partner-binding; InterPro: IPR002810 The nfe genes (nfeA, nfeB, and nfeD) are involved in the nodulation efficiency and competitiveness of Rhizobium meliloti (Sinorhizobium meliloti) (Rhizobium meliloti) on alfalfa roots []. The specific function of this family is unknown although it is unlikely that NfeD is specifically involved in nodulation as the family contains several different archaeal and bacterial species most of which are not symbionts. This entry describes archaeal and bacterial proteins which are variously described, examples are: nodulation protein, nodulation efficiency protein D (nfeD), hypothetical protein and membrane-bound serine protease (ClpP class). A number of these proteins are classified in MEROPS peptidase family S49 as non-peptidase homologues or as unassigned peptidases. ; PDB: 2K5H_A 3CP0_A 2EXD_A.
Probab=20.77 E-value=32 Score=29.47 Aligned_cols=18 Identities=22% Similarity=0.427 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhcCCCCCC
Q 014929 360 ATIFAVVTGVFGMNLKAS 377 (415)
Q Consensus 360 ~~i~t~IaGifGMN~~~~ 377 (415)
.++.++++|+++......
T Consensus 25 ~gi~~~~~g~~~~~~~~~ 42 (144)
T PF01957_consen 25 GGIAAFIAGLLGLFFPDL 42 (144)
T ss_dssp ------------------
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 344477788887776543
No 135
>PF14235 DUF4337: Domain of unknown function (DUF4337)
Probab=20.76 E-value=6.3e+02 Score=22.79 Aligned_cols=35 Identities=11% Similarity=0.003 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014929 303 LEMLLEAYFVVVDNTLSKLLSLKEYIDDTEDLINI 337 (415)
Q Consensus 303 lE~LLe~Y~~~~d~~~~~l~~l~e~i~~~~d~~~~ 337 (415)
.+.-.+.|-.+.+.+....+.+....+..+...+.
T Consensus 71 ~~~~i~~Y~~~~~~~~~e~~~l~~~A~~~e~~~d~ 105 (157)
T PF14235_consen 71 YQKKIARYKKEKARYKSEAEELEAKAKEAEAESDH 105 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 33445667777777777777776666665555444
No 136
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=20.60 E-value=2.3e+02 Score=22.53 Aligned_cols=35 Identities=14% Similarity=0.351 Sum_probs=25.5
Q ss_pred cCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc
Q 014929 186 SISTLNLEHLRRLKGHLLALTQQVQKVHDEIEHLMDDDG 224 (415)
Q Consensus 186 ~~~~~~Le~l~~lK~~L~~l~~~v~~vrd~l~~LlddD~ 224 (415)
..+..+.++|.++-.....++.||+ +||.+||.|.
T Consensus 35 gLs~~d~~~L~~L~~~a~rm~eRI~----tLE~ILdae~ 69 (75)
T PF06667_consen 35 GLSEEDEQRLQELYEQAERMEERIE----TLERILDAEH 69 (75)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHH----HHHHHHcCCC
Confidence 4566667777777777777777776 5888887664
No 137
>PF03176 MMPL: MMPL family; InterPro: IPR004869 Proteins of this entry are putative integral membrane proteins from bacteria. Several of the members are mycobacterial proteins. Many of the proteins contain two copies of this aligned region. The function of these proteins is not known, although it has been suggested that they may be involved in lipid transport [].; GO: 0016020 membrane
Probab=20.48 E-value=1.3e+02 Score=29.72 Aligned_cols=32 Identities=3% Similarity=-0.089 Sum_probs=17.8
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCCCCchhHHHH
Q 014929 358 FVATIFAVVTGVFGMNLKASVFDYPSAFHWVL 389 (415)
Q Consensus 358 ii~~i~t~IaGifGMN~~~~pe~~~~gf~~v~ 389 (415)
+..+..|.++|+..+.|...|.....|....+
T Consensus 251 i~~s~ltt~~gf~~L~~s~~~~~~~~G~~~~~ 282 (333)
T PF03176_consen 251 ILLSALTTAIGFGSLLFSPFPPLRQFGLLAAI 282 (333)
T ss_pred hHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 34444567777777777655444444544333
No 138
>PRK02935 hypothetical protein; Provisional
Probab=20.38 E-value=5.4e+02 Score=21.92 Aligned_cols=9 Identities=22% Similarity=0.235 Sum_probs=4.2
Q ss_pred hhhhhHHHH
Q 014929 340 GNVQNQLIQ 348 (415)
Q Consensus 340 d~~rN~imk 348 (415)
+++-|++=-
T Consensus 6 ssKINkiRt 14 (110)
T PRK02935 6 SNKINKIRT 14 (110)
T ss_pred hhHHHHHHH
Confidence 444555444
No 139
>PF11821 DUF3341: Protein of unknown function (DUF3341); InterPro: IPR021776 This family of proteins are functionally uncharacterised. This family is found in bacteria. Proteins in this family are about 170 amino acids in length.
Probab=20.25 E-value=5.2e+02 Score=23.78 Aligned_cols=37 Identities=16% Similarity=0.116 Sum_probs=19.9
Q ss_pred hcCCCCCCCCCCCchhHHHHH-HHHHHHH-HHHHHHHHH
Q 014929 370 FGMNLKASVFDYPSAFHWVLV-ITGLAGC-LLYFSFLFY 406 (415)
Q Consensus 370 fGMN~~~~pe~~~~gf~~v~~-~~~~~~~-~l~~~~~~~ 406 (415)
|=||+..-|..+|.+|..+.- +++++++ ..++++++.
T Consensus 79 yP~~iGGKP~~S~Pafipi~FEltVL~aa~~~~~g~l~~ 117 (173)
T PF11821_consen 79 YPLNIGGKPLFSWPAFIPITFELTVLFAALGTVLGMLIL 117 (173)
T ss_pred cceecCCCCCCCCcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 677777778777755544432 3444432 333344433
No 140
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=20.21 E-value=2.4e+02 Score=22.43 Aligned_cols=34 Identities=21% Similarity=0.341 Sum_probs=24.9
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc
Q 014929 187 ISTLNLEHLRRLKGHLLALTQQVQKVHDEIEHLMDDDG 224 (415)
Q Consensus 187 ~~~~~Le~l~~lK~~L~~l~~~v~~vrd~l~~LlddD~ 224 (415)
.+....+++.++-....+++.||+ +||+++|+|.
T Consensus 36 ls~~d~~~L~~L~~~a~rm~eRI~----tLE~ILd~e~ 69 (75)
T TIGR02976 36 LSTDDQALLQELYAKADRLEERID----TLERILDAEH 69 (75)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH----HHHHHHcCCC
Confidence 455566777777777777777776 5889998764
No 141
>COG4420 Predicted membrane protein [Function unknown]
Probab=20.15 E-value=1.8e+02 Score=27.21 Aligned_cols=35 Identities=14% Similarity=-0.149 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCCCCCCCC--chhHH
Q 014929 353 LTAATFVATIFAVVTGVFGMNLKASVFDYP--SAFHW 387 (415)
Q Consensus 353 LtilTii~~i~t~IaGifGMN~~~~pe~~~--~gf~~ 387 (415)
.+.++++.+.+.++.-+-+.|+...+-..| |.|++
T Consensus 55 ~Gsw~fil~~~~~ll~Wi~lNl~~~~~~~wDpyPFi~ 91 (191)
T COG4420 55 GGSWAFILTFTLLLLLWIVLNLFLVPGLAWDPYPFIL 91 (191)
T ss_pred cCChHHHHHHHHHHHHHHHHHHhhhcCCcCCCccHHH
Confidence 446777777777777777888876654444 45543
No 142
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=20.13 E-value=1.1e+03 Score=25.16 Aligned_cols=72 Identities=17% Similarity=0.277 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHH---HHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhHH
Q 014929 154 LELALELTCMSLDAQVKELGMEIYP---VLDELASSISTLNLEHLRRLKGHLLALTQQVQKVHDEIEHLMDDDGDMAA 228 (415)
Q Consensus 154 LE~iL~~~~~~Le~~~~~Le~~~~~---~ld~L~~~~~~~~Le~l~~lK~~L~~l~~~v~~vrd~l~~LlddD~dm~~ 228 (415)
=+.|-+.....++++++.++++... .++.|+..-... ..-.++.++..+..-=..+-..+++++..+.+++.
T Consensus 137 C~eC~d~l~~~ld~e~~~~~~e~~~Y~~~l~~Le~~~~~~---~~~~~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~ 211 (447)
T KOG2751|consen 137 CEECMDVLLNKLDKEVEDAEDEVDTYKACLQRLEQQNQDV---SEEDLLKELKNLKEEEERLLQQLEELEKEEAELDH 211 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777888888777776653 445554321111 23334445555555555566677777777777654
Done!