Query 014929
Match_columns 415
No_of_seqs 249 out of 1509
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 03:38:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014929.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014929hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rkg_A Magnesium transporter M 100.0 5.6E-53 1.9E-57 406.0 29.3 239 47-346 16-261 (261)
2 2iub_A CORA, divalent cation t 100.0 3.6E-35 1.2E-39 296.2 31.0 279 45-413 68-363 (363)
3 4ev6_A Magnesium transport pro 100.0 2E-34 6.8E-39 288.2 31.5 285 36-413 39-339 (339)
4 4egw_A Magnesium transport pro 99.7 3E-15 1E-19 145.2 22.9 220 36-348 39-280 (280)
5 3nvo_A Zinc transport protein 99.5 1.2E-12 4.1E-17 125.3 21.4 166 45-224 39-218 (264)
6 3ck6_A Putative membrane trans 99.5 1.7E-12 5.9E-17 123.5 19.9 201 49-347 32-252 (252)
7 2bbh_A Divalent cation transpo 99.3 4.5E-11 1.5E-15 114.6 13.8 166 45-223 59-242 (269)
8 2hn1_A CORA, magnesium and cob 99.2 5.8E-11 2E-15 113.9 12.6 167 45-224 64-243 (266)
9 2iub_A CORA, divalent cation t 96.5 0.18 6E-06 50.0 19.0 103 302-412 254-359 (363)
10 4ev6_A Magnesium transport pro 95.4 0.57 1.9E-05 45.9 16.9 99 306-412 234-335 (339)
11 1nfn_A Apolipoprotein E3; lipi 85.4 7.4 0.00025 35.0 11.1 70 152-222 58-128 (191)
12 3s84_A Apolipoprotein A-IV; fo 73.3 55 0.0019 30.9 13.3 30 299-328 111-141 (273)
13 3v86_A De novo design helix; c 68.3 10 0.00036 22.5 4.3 25 195-219 2-26 (27)
14 4egw_A Magnesium transport pro 66.2 40 0.0014 31.3 10.7 35 314-348 239-277 (280)
15 3s84_A Apolipoprotein A-IV; fo 63.3 1E+02 0.0034 29.0 15.3 63 159-221 36-109 (273)
16 2ks1_B Epidermal growth factor 60.6 12 0.00041 25.7 4.2 13 399-411 27-39 (44)
17 3nvo_A Zinc transport protein 60.3 30 0.001 31.8 8.5 23 199-221 186-208 (264)
18 1gs9_A Apolipoprotein E, APOE4 57.8 36 0.0012 29.7 8.0 30 299-328 129-159 (165)
19 2l2t_A Receptor tyrosine-prote 56.2 12 0.0004 25.8 3.5 14 398-411 25-38 (44)
20 2l7b_A Apolipoprotein E, APO-E 53.6 36 0.0012 32.8 8.0 70 154-224 68-138 (307)
21 3ck6_A Putative membrane trans 52.7 28 0.00097 31.7 6.9 56 153-214 141-199 (252)
22 3r2p_A Apolipoprotein A-I; amp 52.2 1.1E+02 0.0036 26.9 10.3 23 197-219 108-130 (185)
23 2k21_A Potassium voltage-gated 51.1 11 0.00037 31.8 3.2 29 383-411 51-79 (138)
24 2jwa_A Receptor tyrosine-prote 49.7 35 0.0012 23.4 5.0 18 395-412 23-40 (44)
25 3swf_A CGMP-gated cation chann 48.4 69 0.0024 24.4 7.0 47 160-214 7-53 (74)
26 1txp_A HnRNP C, heterogeneous 45.8 20 0.00067 22.1 2.9 24 196-219 2-25 (28)
27 2k1k_A Ephrin type-A receptor 43.7 20 0.00068 23.7 3.0 7 404-410 31-37 (38)
28 3p8c_D Wiskott-aldrich syndrom 43.4 50 0.0017 31.4 7.0 57 153-210 25-81 (279)
29 2l8s_A Integrin alpha-1; trans 43.0 34 0.0012 24.5 4.3 7 405-411 34-40 (54)
30 1nfn_A Apolipoprotein E3; lipi 43.0 61 0.0021 28.9 7.2 31 299-329 129-160 (191)
31 2k1a_A Integrin alpha-IIB; sin 35.2 59 0.002 22.0 4.4 11 387-397 11-21 (42)
32 3trt_A Vimentin; cytoskeleton, 35.1 1.4E+02 0.0046 22.2 8.0 29 191-219 47-75 (77)
33 2knc_A Integrin alpha-IIB; tra 34.8 38 0.0013 24.2 3.5 7 405-411 37-43 (54)
34 2l8s_A Integrin alpha-1; trans 31.8 34 0.0012 24.5 2.8 28 387-414 10-37 (54)
35 2dfs_A Myosin-5A; myosin-V, in 31.1 4E+02 0.014 30.0 12.9 19 314-332 1025-1043(1080)
36 3r2p_A Apolipoprotein A-I; amp 27.8 1.4E+02 0.0048 26.0 7.0 27 197-223 86-112 (185)
37 3onj_A T-snare VTI1; helix, HA 26.6 1.6E+02 0.0054 23.1 6.4 22 192-213 71-93 (97)
38 3ghg_A Fibrinogen alpha chain; 25.5 5.8E+02 0.02 26.4 12.2 27 313-339 132-158 (562)
39 4dnd_A Syntaxin-10, SYN10; str 25.2 2.7E+02 0.0093 23.1 7.9 63 150-216 64-128 (130)
40 3swy_A Cyclic nucleotide-gated 24.9 1.6E+02 0.0056 20.2 5.2 13 196-208 33-45 (46)
41 1vcs_A Vesicle transport throu 24.2 2.6E+02 0.009 22.0 7.6 23 191-213 72-94 (102)
42 3szr_A Interferon-induced GTP- 23.8 2.6E+02 0.0087 29.1 9.2 88 132-221 407-501 (608)
43 1t3u_A Conserved hypothetical 21.1 1.8E+02 0.0061 22.8 5.8 23 202-224 77-99 (104)
44 1deq_A Fibrinogen (alpha chain 21.1 2.7E+02 0.0091 27.6 7.9 51 155-217 108-158 (390)
45 1lrz_A FEMA, factor essential 21.0 3.5E+02 0.012 26.5 9.2 57 159-215 246-303 (426)
46 1iij_A ERBB-2 receptor protein 20.6 49 0.0017 21.5 1.8 14 398-411 22-35 (35)
47 2ca5_A MXIH; transport protein 20.4 3.1E+02 0.01 21.3 6.6 64 158-221 12-80 (85)
48 3efg_A Protein SLYX homolog; x 20.2 1.1E+02 0.0037 23.3 4.0 18 164-181 11-28 (78)
49 3oja_B Anopheles plasmodium-re 20.2 6.7E+02 0.023 25.2 13.3 23 312-334 558-580 (597)
No 1
>3rkg_A Magnesium transporter MRS2, mitochondrial; matrix located domain, hydrophobic GATE magnesium binding site, metal transport; 1.28A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.6e-53 Score=405.98 Aligned_cols=239 Identities=28% Similarity=0.411 Sum_probs=220.8
Q ss_pred ccEEEEEcCCCCeeEEE--echhhhhhhcCCCccchhccCCCC-CcCceEeeecCeeEeeecceEEEEecCceEEeccCC
Q 014929 47 SRSWIKIDQDGNFEILE--LDKTTIMRHCSLPARDLRLLDPLF-IYPSTILGREKAIVVSLVQIRCIITADEVILMNSLD 123 (415)
Q Consensus 47 ~~~Wi~id~~g~~~~~e--~~k~~l~~~~~L~~RDLr~Ld~~~-~~~~~Il~Re~aivvnle~ir~IIt~d~vllf~~~~ 123 (415)
..+|+.||..|++..++ ++|++|++++||+|||||+|||.+ +.+|+|++|++||+||+++|||||++|+|++|++.+
T Consensus 16 ~~~ct~fD~~G~~~~~~~~~~K~~l~~~~~L~~RDLR~ld~~~~~~~PsIl~R~~aIlvnL~~irAII~~d~Vllfd~~~ 95 (261)
T 3rkg_A 16 FISCTVFNSKGNIISMSEKFPKWSFLTEHSLFPRDLRKIDNSSIDIIPTIMCKPNCIVINLLHIKALIERDKVYVFDTTN 95 (261)
T ss_dssp EEEEEEECTTSCEEEEEEEEEHHHHHHHTTCCGGGGGGTSSCCSSCCCEEEECSSCEEEEETTEEEEECSSCEEEECCSC
T ss_pred eEEEEEECCCCCEEEecccccHHHHHHHcCCChhhHHHhcccccCCCceEEecCCeEEEechhceEEEEcceEEEEcCCC
Confidence 57999999999999876 999999999999999999999974 466689999999999999999999999999999987
Q ss_pred cchh----hHHHHHHHHhccCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCChhhHHHHHHHH
Q 014929 124 GCVV----QYYLELCKRLQTNKDQADDLPFEFRALELALELTCMSLDAQVKELGMEIYPVLDELASSISTLNLEHLRRLK 199 (415)
Q Consensus 124 ~~~~----~~~~~L~~rL~~~~~~~~~LpFE~raLE~iL~~~~~~Le~~~~~Le~~~~~~ld~L~~~~~~~~Le~l~~lK 199 (415)
+.+. .|+.+++.|++.++ .+.+||||||||+||.++|+.|++++..++..+.++|++|++++++.+|++|+..|
T Consensus 96 ~~~~~~~~~f~~~l~~~l~~~~--~~~lPFEfraLEa~L~~v~~~Le~e~~~l~~~~~~~L~~L~~~i~~~~L~~Ll~~~ 173 (261)
T 3rkg_A 96 PSAAAKLSVLMYDLESKLSSTK--NNSQFYEHRALESIFINVMSALETDFKLHSQICIQILNDLENEVNRLKLRHLLIKS 173 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSS--CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHH
T ss_pred chhhhhHHHHHHHHHHHhccCC--CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 6554 58899999998753 46899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCcchhHHhhhhhhhhccCCCCCCCcccccccccccccCCCCCCCCCCcchhhhhhhhh
Q 014929 200 GHLLALTQQVQKVHDEIEHLMDDDGDMAAMYLTEKKQRLDSSSDGYTQTNISSLDRVVSKSAPVSPVGSISGAQKLQRAF 279 (415)
Q Consensus 200 ~~L~~l~~~v~~vrd~l~~LlddD~dm~~m~Lt~k~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 279 (415)
++|+.+.++++.||++|+++||||+||+.||||+++.
T Consensus 174 k~L~~~~~kv~~vr~~leelLddDeDm~~myLT~k~~------------------------------------------- 210 (261)
T 3rkg_A 174 KDLTLFYQKTLLIRDLLDELLENDDDLANMYLTVKKS------------------------------------------- 210 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHTCCSSCCC-------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCHHHHHHhhccCCCC-------------------------------------------
Confidence 9999999999999999999999999999999999731
Q ss_pred cccccccCCccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Q 014929 280 SSIVTSKHGSLISSSSNRENVEQLEMLLEAYFVVVDNTLSKLLSLKEYIDDTEDLINIKLGNVQNQL 346 (415)
Q Consensus 280 ~~~~~s~~~~~~~~~~~~~~~eelE~LLe~Y~~~~d~~~~~l~~l~e~i~~~~d~~~~~Ld~~rN~i 346 (415)
..++++|+|||||+||+++|++.++++.++++|++|++++++.||++||++
T Consensus 211 ----------------~~~d~eElEmLLE~Y~~q~d~~~~~~~~L~~~I~~TEe~i~i~LD~~RN~L 261 (261)
T 3rkg_A 211 ----------------PKDNFSDLEMLIETYYTQCDEYVQQSESLIQDIKSTEEIVNIILDANRNSL 261 (261)
T ss_dssp ----------------TTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred ----------------CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Confidence 135889999999999999999999999999999999999999999999985
No 2
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=100.00 E-value=3.6e-35 Score=296.18 Aligned_cols=279 Identities=14% Similarity=0.184 Sum_probs=201.7
Q ss_pred CCccEEEEEcCCCCeeEEEechhhhhhhcCCCccchhcc-CCCCCcCceEeeecCeeE--------------eeecceEE
Q 014929 45 HASRSWIKIDQDGNFEILELDKTTIMRHCSLPARDLRLL-DPLFIYPSTILGREKAIV--------------VSLVQIRC 109 (415)
Q Consensus 45 ~~~~~Wi~id~~g~~~~~e~~k~~l~~~~~L~~RDLr~L-d~~~~~~~~Il~Re~aiv--------------vnle~ir~ 109 (415)
.+...|+.+++..+.+.+ ..|.+.+|||+..+..+ ++ .++|++...++.+. +..+++.+
T Consensus 68 ~~~~~Wi~l~~p~~~~e~----~~l~~~f~l~~l~ied~l~~--~~rpk~e~~~~~lfivl~~~~~~~~~~~~~~~~v~~ 141 (363)
T 2iub_A 68 SSTPTWINITGIHRTDVV----QRVGEFFGIHPLVLEDILNV--HQRPKVEFFENYVFIVLKMFTYDKNLHELESEQVSL 141 (363)
T ss_dssp CSSCEEEEEECTTCHHHH----HHHHHHTTCCHHHHHHHHCC--SSCCEEEEETTEEEEEEEEEEEETTTTEEEEEEEEE
T ss_pred CCCeEEEEeCCCCCHHHH----HHHHHHcCcChhHHHHHhCC--CCCCeEEEECCEEEEEEEeeeecccccccceEEEEE
Confidence 456899999987654444 57889999999877754 43 34556666665542 34568999
Q ss_pred EEecCceEEeccCCcchhhHHHHHHHHhccCCCCC-CCcccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCC
Q 014929 110 IITADEVILMNSLDGCVVQYYLELCKRLQTNKDQA-DDLPFEFRALELALELTCMSLDAQVKELGMEIYPVLDELASSIS 188 (415)
Q Consensus 110 IIt~d~vllf~~~~~~~~~~~~~L~~rL~~~~~~~-~~LpFE~raLE~iL~~~~~~Le~~~~~Le~~~~~~ld~L~~~~~ 188 (415)
+++.++|++++..+ .+.++.+++|+..+.+.. ..-|.. ++-++++.++..+...++.++++++.+++++.++.+
T Consensus 142 ~l~~~~liTv~~~~---~~~~~~v~~rl~~~~~~~~~~~~~~--ll~~lld~ivd~y~~~l~~l~~~id~lE~~v~~~~~ 216 (363)
T 2iub_A 142 ILTKNCVLMFQEKI---GDVFDPVRERIRYNRGIIRKKRADY--LLYSLIDALVDDYFVLLEKIDDEIDVLEEEVLERPE 216 (363)
T ss_dssp EEETTEEEEEESSS---CCSCHHHHHHHHTTCTTTTTSCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCC
T ss_pred EEECCEEEEEEeCC---CchHHHHHHHHHhcCCccccCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999764 467788889987653211 111221 444555555555555667788888888888887777
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhHHhhhhhhhhccCCCCCCCcccccccccccccCCCCCCCCCC
Q 014929 189 TLNLEHLRRLKGHLLALTQQVQKVHDEIEHLMDDDGDMAAMYLTEKKQRLDSSSDGYTQTNISSLDRVVSKSAPVSPVGS 268 (415)
Q Consensus 189 ~~~Le~l~~lK~~L~~l~~~v~~vrd~l~~LlddD~dm~~m~Lt~k~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 268 (415)
...+.++..+|+++..+++.++|.+++++.|.+.+... ++
T Consensus 217 ~~~l~~l~~lrr~l~~lrr~l~p~~~vl~~L~~~~~~~----~~------------------------------------ 256 (363)
T 2iub_A 217 KETVQRTHQLKRNLVELRKTIWPLREVLSSLYRDVPPL----IE------------------------------------ 256 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSSS----CH------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc----CC------------------------------------
Confidence 77899999999999999999999999999998754321 00
Q ss_pred cchhhhhhhhhcccccccCCccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Q 014929 269 ISGAQKLQRAFSSIVTSKHGSLISSSSNRENVEQLEMLLEAYFVVVDNTLSKLLSLKEYIDDTEDLINIKLGNVQNQLIQ 348 (415)
Q Consensus 269 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~eelE~LLe~Y~~~~d~~~~~l~~l~e~i~~~~d~~~~~Ld~~rN~imk 348 (415)
++....++....++..+.+.++.+++.+..+.|.+.+.+++++|++||
T Consensus 257 --------------------------------~~~~~~lrDv~d~~~~~~e~~~~~re~l~~l~d~~~s~is~~~N~imk 304 (363)
T 2iub_A 257 --------------------------------KETVPYFRDVYDHTIQIADTVETFRDIVSGLLDVYLSSVSNKTNEVMK 304 (363)
T ss_dssp --------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011111222333456778888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 014929 349 FELLLTAATFVATIFAVVTGVFGMNLKASVFDYP-SAFHWVLVITGLAGCLLYFSFLFYFKHKKVF 413 (415)
Q Consensus 349 i~l~LtilTii~~i~t~IaGifGMN~~~~pe~~~-~gf~~v~~~~~~~~~~l~~~~~~~frrk~wl 413 (415)
+ ||++|++++|+|||||+|||||++|||.+| ||||+++++|+++|+ ++++||||||||
T Consensus 305 ~---LTiit~IflP~T~IaGiyGMNf~~mPel~~~~Gy~~~l~~m~~i~~----~~~~~Fkrk~Wl 363 (363)
T 2iub_A 305 V---LTIIATIFMPLTFIAGIYGMNFEYMPELRWKWGYPVVLAVMGVIAV----IMVVYFKKKKWL 363 (363)
T ss_dssp H---HHHHHHHHHHHHHHTTSCC--------------CHHHHHHHHHHHH----HHHTTTTSCC--
T ss_pred H---HHHHHHHHHHHHHHHhhhcccCCCCCcccCcHHHHHHHHHHHHHHH----HHHHHHHHcccC
Confidence 6 999999999999999999999999999988 999999999998888 899999999997
No 3
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=2e-34 Score=288.15 Aligned_cols=285 Identities=15% Similarity=0.167 Sum_probs=222.8
Q ss_pred CCCcccccCCCccEEEEEcCCCCeeEEEechhhhhhhcCCCccchhcc-CCCCCcCceEeeecCeeE-----------ee
Q 014929 36 HSVGTKNRGHASRSWIKIDQDGNFEILELDKTTIMRHCSLPARDLRLL-DPLFIYPSTILGREKAIV-----------VS 103 (415)
Q Consensus 36 ~~~~~~~~~~~~~~Wi~id~~g~~~~~e~~k~~l~~~~~L~~RDLr~L-d~~~~~~~~Il~Re~aiv-----------vn 103 (415)
.+..++. ......|+.+.+..+.+. ..|.+.+|+|+..+..+ |+ .+.|++...++..+ +.
T Consensus 39 ~l~~~~~-~d~~~vWIdl~~Pt~~E~-----~~l~~~~~l~~~~~ed~l~~--~~rpk~e~~~~~~~iv~~~~~~~~~~~ 110 (339)
T 4ev6_A 39 KLDEISF-EDYRLIWIDCYDPKDEEL-----YKLSKKIGISVSDLQIGLDE--QEIPRVEEDEDFYLIIYKAPLFEEDIT 110 (339)
T ss_dssp BCCSCCC-SSCSCEEEEEESCCHHHH-----HHHHHHHTCCHHHHHHHHCT--TCCCEEEEETTEEEEECCCCCCTTTCC
T ss_pred chhhhhc-cCCCEEEEEeCCCCHHHH-----HHHHHHHCcCHhHHHHhhCC--ccCCeEEEECCEEEEEEecCccCCCcc
Confidence 3444432 345678999987665443 57999999999988744 44 34566777676654 34
Q ss_pred ecceEEEEecCceEEeccCCcchhhHHHHHHHHhccCCCC---CCCcccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 014929 104 LVQIRCIITADEVILMNSLDGCVVQYYLELCKRLQTNKDQ---ADDLPFEFRALELALELTCMSLDAQVKELGMEIYPVL 180 (415)
Q Consensus 104 le~ir~IIt~d~vllf~~~~~~~~~~~~~L~~rL~~~~~~---~~~LpFE~raLE~iL~~~~~~Le~~~~~Le~~~~~~l 180 (415)
.+++.++++++++++++..+ .+.++.+++++..+.+. .....| ++-++++.++..+..-++.+++++..++
T Consensus 111 ~~~v~i~l~~~~lITv~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~---ll~~lld~ivd~~~~~l~~l~~~i~~lE 184 (339)
T 4ev6_A 111 TTSLGIYIKNNLLLTIHSDK---IKAIGRLHKLISTKKPRIVFERGIGF---LLYHILNEITRSYSRILMNLEDELEELE 184 (339)
T ss_dssp CCCCEEEEETTEEEEEESSC---CHHHHHHHHHSSSSSSCCCCCSCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEEECCeeEEeecCC---cchhHHHHHHHHcCCCccccccCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999998765 57889999998765432 112122 4555666666666666777888888888
Q ss_pred HHHhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhHHhhhhhhhhccCCCCCCCcccccccccccccCC
Q 014929 181 DELASSISTLNLEHLRRLKGHLLALTQQVQKVHDEIEHLMDDDGDMAAMYLTEKKQRLDSSSDGYTQTNISSLDRVVSKS 260 (415)
Q Consensus 181 d~L~~~~~~~~Le~l~~lK~~L~~l~~~v~~vrd~l~~LlddD~dm~~m~Lt~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (415)
+++.++.+...++++..+|+.+..+++.+.|.|+++..+.+.+.... +
T Consensus 185 ~~l~~~~~~~~l~~l~~lrr~l~~lrr~l~~~~~vl~~L~~~~~~~~----~---------------------------- 232 (339)
T 4ev6_A 185 DKLLAGYDREVMEKILGLRKTLVYFHKSLIANRDVLVLLKRKYLPIT----T---------------------------- 232 (339)
T ss_dssp HTSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCBTTB----C----------------------------
T ss_pred HhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcccccc----c----------------------------
Confidence 88888888888999999999999999999999999999977553320 0
Q ss_pred CCCCCCCCcchhhhhhhhhcccccccCCccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014929 261 APVSPVGSISGAQKLQRAFSSIVTSKHGSLISSSSNRENVEQLEMLLEAYFVVVDNTLSKLLSLKEYIDDTEDLINIKLG 340 (415)
Q Consensus 261 ~p~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~eelE~LLe~Y~~~~d~~~~~l~~l~e~i~~~~d~~~~~Ld 340 (415)
++....++....++..+.+.++.+++.+..+.+.+...++
T Consensus 233 ----------------------------------------~~~~~~l~dv~~~~~~l~e~~~~~~e~l~~l~d~~~s~is 272 (339)
T 4ev6_A 233 ----------------------------------------KEDRENFEDLYYDTLQLIDMSATYREVLTSMMDITLSLEN 272 (339)
T ss_dssp ----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0111123344455667888889999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 014929 341 NVQNQLIQFELLLTAATFVATIFAVVTGVFGMNLKASVFDYP-SAFHWVLVITGLAGCLLYFSFLFYFKHKKVF 413 (415)
Q Consensus 341 ~~rN~imki~l~LtilTii~~i~t~IaGifGMN~~~~pe~~~-~gf~~v~~~~~~~~~~l~~~~~~~frrk~wl 413 (415)
+++|++||+ ||++|++++|+|||||+|||||++|||.+| ||||+++++|+++|+ ++++||||||||
T Consensus 273 ~~~N~~mk~---LTiit~IflP~T~IaGiyGMNf~~mPel~~~~gy~~~l~~m~~~~~----~~~~~fkrk~WL 339 (339)
T 4ev6_A 273 IKMNQIMKI---LTMVTTIFAVPMWITGIYGMNFSYLPLANNPQGFWLVMALMVVIIM----IFVYIFRRSGWI 339 (339)
T ss_dssp HHHHHHHHH---HHHHHHHSSHHHHHHHHTTCCCSCCTTSSCTTHHHHHHHHHHHHHH----HHHHHHHTTTCC
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHhhccCcCCCCCCccCchHHHHHHHHHHHHHH----HHHHHHHHcCCC
Confidence 999999996 999999999999999999999999999987 999999999998888 899999999997
No 4
>4egw_A Magnesium transport protein CORA; magnesium transporter, magnesium binding, metal transp; 2.50A {Methanocaldococcus jannaschii}
Probab=99.69 E-value=3e-15 Score=145.21 Aligned_cols=220 Identities=14% Similarity=0.109 Sum_probs=154.6
Q ss_pred CCCcccccCCCccEEEEEcCCCCeeEEEechhhhhhhcCCCccchhcc-CCCCCcCceEeeecCeeE-----------ee
Q 014929 36 HSVGTKNRGHASRSWIKIDQDGNFEILELDKTTIMRHCSLPARDLRLL-DPLFIYPSTILGREKAIV-----------VS 103 (415)
Q Consensus 36 ~~~~~~~~~~~~~~Wi~id~~g~~~~~e~~k~~l~~~~~L~~RDLr~L-d~~~~~~~~Il~Re~aiv-----------vn 103 (415)
.+..++. ...+..|+.+.+....+. ..|.+.|||||..+..+ ++ .+.|++...++.++ +.
T Consensus 39 ~ld~i~~-~d~~~vWIdl~~Pt~eEl-----~~l~~~f~lh~l~leD~l~~--~~rpKie~~~d~~fivl~~~~~~~~~~ 110 (280)
T 4egw_A 39 KLDEISF-EDYRLIWIDCYDPKDEEL-----YKLSKKIGISVSDLQIGLDE--QEIPRVEEDEDFYLIIYKAPLFEEDIT 110 (280)
T ss_dssp CTTSCCT-TSSSCEEEEEESCCHHHH-----HHHHHHHTCCHHHHHHHTCT--TCCCEEECCSSSEEEEEEEEECSSSCE
T ss_pred cHHhhcC-CCCeEEEEEeCCCCHHHH-----HHHHHHHCcCHHHHHHHhCc--ccCceEEEECCEEEEEEEeccccccce
Confidence 3444432 446788999988766543 57999999999987744 44 34556666665544 35
Q ss_pred ecceEEEEecCceEEeccCCcchhhHHHHHHHHhccCCC------CCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 014929 104 LVQIRCIITADEVILMNSLDGCVVQYYLELCKRLQTNKD------QADDLPFEFRALELALELTCMSLDAQVKELGMEIY 177 (415)
Q Consensus 104 le~ir~IIt~d~vllf~~~~~~~~~~~~~L~~rL~~~~~------~~~~LpFE~raLE~iL~~~~~~Le~~~~~Le~~~~ 177 (415)
.+++.++++.++|++|+..+ .+.++.+++|+..+.+ +++++.| .+|+.+.+.+.. -++.+++.+.
T Consensus 111 t~~v~i~l~~~~lITv~~~~---~~~~~~v~~~l~~~~~~~~~~~g~~~ll~--~lld~ivd~y~~----~l~~i~~~id 181 (280)
T 4egw_A 111 TTSLGIYIKNNLLLTIHSDK---IKAIGRLHKLISTKKPRIVFERGIGFLLY--HILNEITRSYSR----ILMNLEDELE 181 (280)
T ss_dssp EEEEEEEEETTEEEEEESSC---CHHHHHHHHHHHHSCCSSSCTTTTTHHHH--HHHHHHHHHHHH----HHHHHHHHHH
T ss_pred eeeEEEEEECCEEEEEecCC---cchHHHHHHHHHhcCcccccccCHHHHHH--HHHHHHHHHHHH----HHHHHHHHHH
Confidence 67899999999999999765 5788999999876543 2233322 355555555554 5557788888
Q ss_pred HHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhHHhhhhhhhhccCCCCCCCcccccccccccc
Q 014929 178 PVLDELASSISTLNLEHLRRLKGHLLALTQQVQKVHDEIEHLMDDDGDMAAMYLTEKKQRLDSSSDGYTQTNISSLDRVV 257 (415)
Q Consensus 178 ~~ld~L~~~~~~~~Le~l~~lK~~L~~l~~~v~~vrd~l~~LlddD~dm~~m~Lt~k~~~~~~~~~~~~~~~~~~~~~~~ 257 (415)
.+++++..+.++..+.++..+|++|..|++.++|.|+++..|.+.+.... ++
T Consensus 182 ~lE~~l~~~~~~~~l~~i~~lrr~l~~lrr~l~p~~~vl~~L~~~~~~~~----~~------------------------ 233 (280)
T 4egw_A 182 ELEDKLLAGYDREVMEKILGLRKTLVYFHKSLIANRDVLVLLKRKYLPIT----TK------------------------ 233 (280)
T ss_dssp HHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSSC----CH------------------------
T ss_pred HHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCcccC----CH------------------------
Confidence 88888888888889999999999999999999999999999987653320 00
Q ss_pred cCCCCCCCCCCcchhhhhhhhhcccccccCCccccCCCcchhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Q 014929 258 SKSAPVSPVGSISGAQKLQRAFSSIVTSKHGSLISSSSNRENVEQLEMLLEAYFVVV----DNTLSKLLSLKEYIDDTED 333 (415)
Q Consensus 258 ~~~~p~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~eelE~LLe~Y~~~~----d~~~~~l~~l~e~i~~~~d 333 (415)
+ ...||+|+ ..+.+.++.+++.+..+.|
T Consensus 234 ----------------------------------------~--------~~~~l~Dv~dh~~~~~e~~~~~re~l~~l~d 265 (280)
T 4egw_A 234 ----------------------------------------E--------DRENFEDLYYDTLQLIDMSATYREVLTSMMD 265 (280)
T ss_dssp ----------------------------------------H--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------------------------------H--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 23467664 4566777788888888888
Q ss_pred HHHHHhhhhhhHHHH
Q 014929 334 LINIKLGNVQNQLIQ 348 (415)
Q Consensus 334 ~~~~~Ld~~rN~imk 348 (415)
.+.+.+++++|++||
T Consensus 266 ~~~s~is~~~N~iMK 280 (280)
T 4egw_A 266 ITLSLENIKMNQIMK 280 (280)
T ss_dssp HHHHHCC--------
T ss_pred HHHHHHHHHHHHhhC
Confidence 888899999999997
No 5
>3nvo_A Zinc transport protein ZNTB; alpha-beta-alpha sandwich, zinc efflux system, membrane, TRA protein; 2.30A {Salmonella enterica} PDB: 3nwi_A
Probab=99.52 E-value=1.2e-12 Score=125.33 Aligned_cols=166 Identities=13% Similarity=0.088 Sum_probs=120.3
Q ss_pred CCccEEEEEcCCCCeeEEEechhhhhhhcCCCccchhccCCCCCcCceEeeecCeeEe--------------eecceEEE
Q 014929 45 HASRSWIKIDQDGNFEILELDKTTIMRHCSLPARDLRLLDPLFIYPSTILGREKAIVV--------------SLVQIRCI 110 (415)
Q Consensus 45 ~~~~~Wi~id~~g~~~~~e~~k~~l~~~~~L~~RDLr~Ld~~~~~~~~Il~Re~aivv--------------nle~ir~I 110 (415)
.+...|+.+++....+ + ..|.+.+|||+..+..+-. ..+.|++...++.+++ .+++++++
T Consensus 39 ~~~~~Wi~l~~p~~~e-~----~~l~~~~~l~~l~~ed~~~-~~~rpk~e~~~~~~fivl~~~~~~~~~~~~~~~~v~~~ 112 (264)
T 3nvo_A 39 SQHPCWLHLNYTHPDS-A----RWLASTPLLPNNVRDALAG-ESSRPRVSRMGEGTLITLRCINGSTDERPDQLVAMRLY 112 (264)
T ss_dssp TTSCEEEEEETTSHHH-H----HHHHHCTTSCTTTHHHHTT-CCCSCEEEEETTEEEEEEECC----------CCEEEEE
T ss_pred CCCCEEEEeCCCCHHH-H----HHHHhccCCCHHHHHHHhC-CCCCCceEEECCEEEEEEEecccCCCCCCcceEEEEEE
Confidence 5678999999854432 2 5788999999997775422 1345667766666543 35789999
Q ss_pred EecCceEEeccCCcchhhHHHHHHHHhccCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCChh
Q 014929 111 ITADEVILMNSLDGCVVQYYLELCKRLQTNKDQADDLPFEFRALELALELTCMSLDAQVKELGMEIYPVLDELASSISTL 190 (415)
Q Consensus 111 It~d~vllf~~~~~~~~~~~~~L~~rL~~~~~~~~~LpFE~raLE~iL~~~~~~Le~~~~~Le~~~~~~ld~L~~~~~~~ 190 (415)
++.++|++++..+ .+.++.+++|+..+.+.. . |. .++-++++.++..+...++.+++.+..+++++.++ +..
T Consensus 113 l~~~~lITv~~~~---~~~~~~v~~rl~~~~~~~-~-~~--~ll~~lld~ivd~y~~~l~~l~~~id~lE~~l~~~-~~~ 184 (264)
T 3nvo_A 113 MDERFIVSTRQRK---VLALDDVVSDLQEGTGPV-D-CG--GWLVDVCDALTDHASEFIEELHDKIIDLEDNLLDQ-QIP 184 (264)
T ss_dssp ECSSEEEEEESSC---CHHHHHHHHHHHTTCSCS-S-HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-----CCC
T ss_pred EeCCEEEEEecCC---cCcHHHHHHHHHhCCCCC-C-HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-Cch
Confidence 9999999999864 588999999997754322 1 22 24555555555555556667777777777777666 667
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc
Q 014929 191 NLEHLRRLKGHLLALTQQVQKVHDEIEHLMDDDG 224 (415)
Q Consensus 191 ~Le~l~~lK~~L~~l~~~v~~vrd~l~~LlddD~ 224 (415)
.+.+|..+|+.+..|++.++|.|+++.+|.+.+.
T Consensus 185 ~l~~l~~lrr~l~~lrr~l~p~~~vl~~L~~~~~ 218 (264)
T 3nvo_A 185 PRGFLALLRKQLIVMRRYMAPQRDVYARLASERL 218 (264)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCC
Confidence 8999999999999999999999999999988653
No 6
>3ck6_A Putative membrane transport protein; APC91421.1, ZNTB, cytoplasmic domain, PSI-2, protein structure initiative; HET: MSE; 1.90A {Vibrio parahaemolyticus rimd 2210633} PDB: 3bhc_A*
Probab=99.49 E-value=1.7e-12 Score=123.50 Aligned_cols=201 Identities=9% Similarity=0.080 Sum_probs=139.0
Q ss_pred EEEEEcCCCCeeEEEechhhhhhhcCCCccchhcc-CCCCCcCceEeeecC-eeEe--e------------ecceEEEEe
Q 014929 49 SWIKIDQDGNFEILELDKTTIMRHCSLPARDLRLL-DPLFIYPSTILGREK-AIVV--S------------LVQIRCIIT 112 (415)
Q Consensus 49 ~Wi~id~~g~~~~~e~~k~~l~~~~~L~~RDLr~L-d~~~~~~~~Il~Re~-aivv--n------------le~ir~IIt 112 (415)
.|+.+++....+ + ..|.+. |||+..+..+ +. .+.|++...++ .+++ + ...+.++++
T Consensus 32 ~Wi~l~~p~~~e-~----~~l~~~-~l~~l~~ed~l~~--~~rpk~e~~~d~~lfivl~~~~~~~~~~~~~~~~l~i~l~ 103 (252)
T 3ck6_A 32 HWYHCERLHPDI-R----GWLEDN-HVPRATVDHLLAD--ESRPSFHPLDDDNFMLILRGINMNENASPEDMLSIRILYF 103 (252)
T ss_dssp EEEEEETTCTTH-H----HHHHHT-TCCHHHHHHHHCS--SCCCEEEECSTTCEEEEEEECCCSTTCCTTSCEEEEEEEE
T ss_pred EEEEecCCCHHH-H----HHHHHc-CCCHHHHHHHhCC--CCCCceEEeCCceEEEEEecCccCCCCCcccEEEEEEEEe
Confidence 999999866433 2 478888 9999877754 33 45667888888 6632 2 234677999
Q ss_pred cCceEEeccCCcchhhHHHHHHHHhccCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCChhhH
Q 014929 113 ADEVILMNSLDGCVVQYYLELCKRLQTNKDQADDLPFEFRALELALELTCMSLDAQVKELGMEIYPVLDELASSISTLNL 192 (415)
Q Consensus 113 ~d~vllf~~~~~~~~~~~~~L~~rL~~~~~~~~~LpFE~raLE~iL~~~~~~Le~~~~~Le~~~~~~ld~L~~~~~~~~L 192 (415)
.++|++++..+ .+.++.+++|+..+.+.. . |.. +|-++++.+...+..-++.+++.+..++++ ...+
T Consensus 104 ~~~lITvr~~~---~~~~~~v~~~l~~~~~~~-~-~~~--ll~~lld~ivd~y~~~l~~l~~~id~lE~~------~~~~ 170 (252)
T 3ck6_A 104 QGALISTRKIP---SRAIMEIRQALAEHKGPK-S-LAS--LLNQIIEGLNGKIDLYLDTIEETLNEFDVN------DEST 170 (252)
T ss_dssp TTEEEEEESSC---CHHHHHHHHHHHTTCSCS-S-HHH--HHHHHHHHHHHHHHHHHHHHHHHHHTCCTT------CGGG
T ss_pred CCEEEEEeCCC---cchHHHHHHHHHhCCCCC-C-HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC------chHH
Confidence 99999999865 588999999997654322 2 221 333444444444444555566665444333 2357
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhHHhhhhhhhhccCCCCCCCcccccccccccccCCCCCCCCCCcchh
Q 014929 193 EHLRRLKGHLLALTQQVQKVHDEIEHLMDDDGDMAAMYLTEKKQRLDSSSDGYTQTNISSLDRVVSKSAPVSPVGSISGA 272 (415)
Q Consensus 193 e~l~~lK~~L~~l~~~v~~vrd~l~~LlddD~dm~~m~Lt~k~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 272 (415)
.+|..+|+++..+++.++|.|+++.+|.+.+..+ . +.
T Consensus 171 ~~l~~lrr~l~~lrr~l~p~r~~l~~L~r~~~~~-~----~~-------------------------------------- 207 (252)
T 3ck6_A 171 YNHIAAQKALISIKRFIRPQQYAIRDLIESESEL-V----TS-------------------------------------- 207 (252)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH-H----HT--------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC-C----HH--------------------------------------
Confidence 8899999999999999999999999999865432 1 10
Q ss_pred hhhhhhhcccccccCCccccCCCcchhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Q 014929 273 QKLQRAFSSIVTSKHGSLISSSSNRENVEQLEMLLEAYFVV----VDNTLSKLLSLKEYIDDTEDLINIKLGNVQNQLI 347 (415)
Q Consensus 273 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~eelE~LLe~Y~~~----~d~~~~~l~~l~e~i~~~~d~~~~~Ld~~rN~im 347 (415)
...||++ +..+.+.++.+++.+..+.+.+...+++++|++|
T Consensus 208 ----------------------------------~~~~~rdv~d~~~~~~e~i~~~re~~~~l~d~~~s~~s~~~N~~m 252 (252)
T 3ck6_A 208 ----------------------------------RPHQYRFAHNNITRINETIEFYLGEVALFQDEIKHNRDEKTNKNS 252 (252)
T ss_dssp ----------------------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred ----------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 1135554 5567788899999999999999999999999987
No 7
>2bbh_A Divalent cation transport-related protein; transporter, Mg, membrane, structural genomics, structural G consortium, SGC; HET: DMU; 1.85A {Thermotoga maritima} SCOP: d.328.1.1
Probab=99.26 E-value=4.5e-11 Score=114.65 Aligned_cols=166 Identities=12% Similarity=0.177 Sum_probs=114.2
Q ss_pred CCccEEEEEcCCCCeeEEEechhhhhhhcCCCccchhcc-CCCCCcCceEeeecCeeE--------------eeecceEE
Q 014929 45 HASRSWIKIDQDGNFEILELDKTTIMRHCSLPARDLRLL-DPLFIYPSTILGREKAIV--------------VSLVQIRC 109 (415)
Q Consensus 45 ~~~~~Wi~id~~g~~~~~e~~k~~l~~~~~L~~RDLr~L-d~~~~~~~~Il~Re~aiv--------------vnle~ir~ 109 (415)
.+...|+.+++..+.+.+ ..|.+.+|||+..+..+ ++ .++|++...++++. +..+++.+
T Consensus 59 ~~~~~Wi~l~~p~~~~e~----~~l~~~f~l~~l~~ed~l~~--~~rpk~e~~~d~lfivl~~~~~~~~~~~~~~~~v~~ 132 (269)
T 2bbh_A 59 SSTPTWINITGIHRTDVV----QRVGEFFGTHPLVLEDILNV--HQRPKVEFFENYVFIVLKMFTYDKNLHELESEQVSL 132 (269)
T ss_dssp CSSCEEEEEECTTCHHHH----HHHHHHHTCCHHHHHHHHCT--TCCCEEEECSSEEEEEEEEEECCC--CCCEEEEEEE
T ss_pred CCCeEEEEecCCCCHHHH----HHHHHHcCCCHhHHHHHhCc--CCCceEEEECCEEEEEEEeeeecCCcCceeEEEEEE
Confidence 346889999987555544 58889999999866644 33 34455665555542 24567899
Q ss_pred EEecCceEEeccCCcchhhHHHHHHHHhccCCCC--CCCccc-HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcc
Q 014929 110 IITADEVILMNSLDGCVVQYYLELCKRLQTNKDQ--ADDLPF-EFRALELALELTCMSLDAQVKELGMEIYPVLDELASS 186 (415)
Q Consensus 110 IIt~d~vllf~~~~~~~~~~~~~L~~rL~~~~~~--~~~LpF-E~raLE~iL~~~~~~Le~~~~~Le~~~~~~ld~L~~~ 186 (415)
+++.++|++|+..+ .+.++.+++|+..+.+. .....| -+.+|+.+++.+.. -++.+++.+..+++++.++
T Consensus 133 ~l~~~~lITv~~~~---~~~~~~v~~rl~~~~~~~~~~~~~~ll~~lld~ivd~y~~----~l~~i~~~id~lE~~v~~~ 205 (269)
T 2bbh_A 133 ILTKNCVLMFQEKI---GDVFDPVRERIRYNRGIIRKKRADYLLYSLIDALVDDYFV----LLEKIDDEIDVLEEEVLER 205 (269)
T ss_dssp EEETTEEEEEESSS---CCSCHHHHHHHHTTCTTGGGSCHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHCC---
T ss_pred EEECCEEEEEECCC---CCcHHHHHHHHHhcCCchhhCCHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhcC
Confidence 99999999999764 46777888898765221 112222 12455555555544 5556677777777777666
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Q 014929 187 ISTLNLEHLRRLKGHLLALTQQVQKVHDEIEHLMDDD 223 (415)
Q Consensus 187 ~~~~~Le~l~~lK~~L~~l~~~v~~vrd~l~~LlddD 223 (415)
.+...+.+|..+|+.+..|++.++|.++++..|.+.+
T Consensus 206 ~~~~~l~~l~~lrr~l~~lrr~l~p~~~vl~~L~~~~ 242 (269)
T 2bbh_A 206 PEKETVQRTHQLKRNLVELRKTIWPLREVLSSLYRDV 242 (269)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 6667899999999999999999999999999999764
No 8
>2hn1_A CORA, magnesium and cobalt transporter; integral membrane protein fragment, metal transporter protei divalent cations, metal transport; 2.90A {Archaeoglobus fulgidus}
Probab=99.22 E-value=5.8e-11 Score=113.88 Aligned_cols=167 Identities=13% Similarity=0.135 Sum_probs=122.4
Q ss_pred CCccEEEEEcCCCCeeEEEechhhhhhhcCCCccchhcc-CCCCCcCceEeeecCeeE-----------eeecceEEEEe
Q 014929 45 HASRSWIKIDQDGNFEILELDKTTIMRHCSLPARDLRLL-DPLFIYPSTILGREKAIV-----------VSLVQIRCIIT 112 (415)
Q Consensus 45 ~~~~~Wi~id~~g~~~~~e~~k~~l~~~~~L~~RDLr~L-d~~~~~~~~Il~Re~aiv-----------vnle~ir~IIt 112 (415)
.+...|+.+++.++.+.+ ..|.+.+|||+.-+..+ ++ .++|++...+++++ +..+++.++++
T Consensus 64 ~~~~~Wi~l~~p~~~~e~----~~l~~~f~l~~l~~ed~l~~--~~rpk~e~~~d~lfivl~~~~~~~~~~~~~v~~~l~ 137 (266)
T 2hn1_A 64 LNKKLWIDVVGVHDESLI----AKICEFLGIHPLAAEDILNT--AQRVKIEDYDDHLFLVLKILLYNETLEIDQLSLVLK 137 (266)
T ss_dssp TTSEEEEEECCCCCHHHH----HHHHHTTTCCHHHHHHHHBT--TCCSEEEECSSEEEEEEEEEEESSSEEEEEEEEEEE
T ss_pred CCCeEEEEeCCCCCHHHH----HHHHHHcCCCHhHHHHHhCC--CCCCeEEEECCEEEEEEEeccccCccceEEEEEEEE
Confidence 456899999987555544 58889999999876654 33 34556766666652 34578999999
Q ss_pred cCceEEeccCCcchhhHHHHHHHHhccCCCC-CCCcccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCChhh
Q 014929 113 ADEVILMNSLDGCVVQYYLELCKRLQTNKDQ-ADDLPFEFRALELALELTCMSLDAQVKELGMEIYPVLDELASSISTLN 191 (415)
Q Consensus 113 ~d~vllf~~~~~~~~~~~~~L~~rL~~~~~~-~~~LpFE~raLE~iL~~~~~~Le~~~~~Le~~~~~~ld~L~~~~~~~~ 191 (415)
.++|++++..+ .+.++.+++|+..+... ...-.| ++-++++.+...+..-++.+++.+..+++++.++.+ ..
T Consensus 138 ~~~lITv~~~~---~~~~~~v~~rl~~~~~~~~~~~~~---ll~~lld~ivd~y~~~l~~i~~~id~lE~~l~~~~~-~~ 210 (266)
T 2hn1_A 138 KNLVATFEERE---YWILDSIRSRLKSGGRMRKLAGDY---LAYTILDAVVDSYFEALLKISDEIEVLEDEVVSGDS-TL 210 (266)
T ss_dssp TTEEEEEESSS---SCSTHHHHHHHHSSSHHHHSCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-CC
T ss_pred CCEEEEEEcCC---CChHHHHHHHHHhCCchhhcCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcH-HH
Confidence 99999999764 46678889998765210 011112 344555555555555666778888888888876666 78
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc
Q 014929 192 LEHLRRLKGHLLALTQQVQKVHDEIEHLMDDDG 224 (415)
Q Consensus 192 Le~l~~lK~~L~~l~~~v~~vrd~l~~LlddD~ 224 (415)
+.+|..+|+.+..|++.++|.++++..|.+.+.
T Consensus 211 l~~l~~lrr~l~~lrr~l~p~~~vl~~L~~~~~ 243 (266)
T 2hn1_A 211 IGKIHSLKREILAFRNAVWPLRDVLSFFTRVEH 243 (266)
T ss_dssp CCHHHHHHHHHHHHHHHHTTHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999998653
No 9
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=96.48 E-value=0.18 Score=50.03 Aligned_cols=103 Identities=21% Similarity=0.292 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCC
Q 014929 302 QLEMLLEAYFVVV-DNTLSKLLSLKEYIDDTEDLINIKLGNVQNQLIQFELLLTAATFVATIFAVVTGVFGMNLKASVFD 380 (415)
Q Consensus 302 elE~LLe~Y~~~~-d~~~~~l~~l~e~i~~~~d~~~~~Ld~~rN~imki~l~LtilTii~~i~t~IaGifGMN~~~~pe~ 380 (415)
.+..-...|++|+ |++.+..+.+..+.+.+..+.+.+++...|+..++ +.++|++++||.-.+=+-|. -+|-+.
T Consensus 254 ~~~~~~~~~lrDv~d~~~~~~e~~~~~re~l~~l~d~~~s~is~~~N~i---mk~LTiit~IflP~T~IaGi--yGMNf~ 328 (363)
T 2iub_A 254 LIEKETVPYFRDVYDHTIQIADTVETFRDIVSGLLDVYLSSVSNKTNEV---MKVLTIIATIFMPLTFIAGI--YGMNFE 328 (363)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTTS--CC----
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhh--hcccCC
Confidence 4444556799997 89999999999999999999999999999999986 99999999999999999996 344444
Q ss_pred -CC-chhHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 014929 381 -YP-SAFHWVLVITGLAGCLLYFSFLFYFKHKKV 412 (415)
Q Consensus 381 -~~-~gf~~v~~~~~~~~~~l~~~~~~~frrk~w 412 (415)
-| ..+.|-..++++ +++++.+..+.+-|+
T Consensus 329 ~mPel~~~~Gy~~~l~---~m~~i~~~~~~~Fkr 359 (363)
T 2iub_A 329 YMPELRWKWGYPVVLA---VMGVIAVIMVVYFKK 359 (363)
T ss_dssp ----------CHHHHH---HHHHHHHHHHTTTTS
T ss_pred CCCcccCcHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 33 334333322222 233355555554443
No 10
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=95.41 E-value=0.57 Score=45.85 Aligned_cols=99 Identities=17% Similarity=0.154 Sum_probs=70.4
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCC-CC-
Q 014929 306 LLEAYFVVV-DNTLSKLLSLKEYIDDTEDLINIKLGNVQNQLIQFELLLTAATFVATIFAVVTGVFGMNLKASVFD-YP- 382 (415)
Q Consensus 306 LLe~Y~~~~-d~~~~~l~~l~e~i~~~~d~~~~~Ld~~rN~imki~l~LtilTii~~i~t~IaGifGMN~~~~pe~-~~- 382 (415)
-...|++++ +++.+..+.+..+.+.+..+.+.+++...|+..++ +.++|+++++|...+=+-|. =+|-.. -|
T Consensus 234 ~~~~~l~dv~~~~~~l~e~~~~~~e~l~~l~d~~~s~is~~~N~~---mk~LTiit~IflP~T~IaGi--yGMNf~~mPe 308 (339)
T 4ev6_A 234 EDRENFEDLYYDTLQLIDMSATYREVLTSMMDITLSLENIKMNQI---MKILTMVTTIFAVPMWITGI--YGMNFSYLPL 308 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHSSHHHHHHHH--TTCCCSCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhh--ccCcCCCCCC
Confidence 345688886 88888888888888888888888888888888886 99999999999999999985 345444 34
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 014929 383 SAFHWVLVITGLAGCLLYFSFLFYFKHKKV 412 (415)
Q Consensus 383 ~gf~~v~~~~~~~~~~l~~~~~~~frrk~w 412 (415)
..+.|...+.+++ ++++.++.+.+-|+
T Consensus 309 l~~~~gy~~~l~~---m~~~~~~~~~~fkr 335 (339)
T 4ev6_A 309 ANNPQGFWLVMAL---MVVIIMIFVYIFRR 335 (339)
T ss_dssp SSCTTHHHHHHHH---HHHHHHHHHHHHHT
T ss_pred ccCchHHHHHHHH---HHHHHHHHHHHHHH
Confidence 4555544333222 23366665555443
No 11
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=85.42 E-value=7.4 Score=34.98 Aligned_cols=70 Identities=20% Similarity=0.332 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCChhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhC
Q 014929 152 RALELALELTCMSLDAQVKELGMEIYPVLDELASSISTLNLEHLR-RLKGHLLALTQQVQKVHDEIEHLMDD 222 (415)
Q Consensus 152 raLE~iL~~~~~~Le~~~~~Le~~~~~~ld~L~~~~~~~~Le~l~-~lK~~L~~l~~~v~~vrd~l~~Lldd 222 (415)
+=+...+......+...+.++...+.|..+++..++.. ..+.++ ++++.+..++.++.|.++.+..-+..
T Consensus 58 ~el~~l~~e~~~~l~~~~~~l~~qL~P~~~e~~~~l~~-~~e~lr~~l~kdlEelr~kL~P~~eEL~~~l~~ 128 (191)
T 1nfn_A 58 QELRALMDETMKELKAYKSELEEQLTPVAEETRARLSK-ELQAAQARLGADMEDVCGRLVQYRGEVQAMLGQ 128 (191)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTC----------CHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34556666667777777777888888887777666543 344554 57888999999999988888776653
No 12
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=73.25 E-value=55 Score=30.91 Aligned_cols=30 Identities=23% Similarity=0.200 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 014929 299 NVEQLEMLLEAYFVVV-DNTLSKLLSLKEYI 328 (415)
Q Consensus 299 ~~eelE~LLe~Y~~~~-d~~~~~l~~l~e~i 328 (415)
+++++-..+.+|..++ +.+.+.++.+++.+
T Consensus 111 ~veelk~~L~Py~eelr~k~~~~leeLr~~l 141 (273)
T 3s84_A 111 NVEELKGRLTPYADEFKVKIDQTVEELRRSL 141 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhHhHHHHHHHHHHHHHHHHHHHh
Confidence 5666666677777666 55666666666643
No 13
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=68.35 E-value=10 Score=22.49 Aligned_cols=25 Identities=28% Similarity=0.472 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 014929 195 LRRLKGHLLALTQQVQKVHDEIEHL 219 (415)
Q Consensus 195 l~~lK~~L~~l~~~v~~vrd~l~~L 219 (415)
++++|.+.-+|+..|+.++|++.+|
T Consensus 2 vyqlkdevgelkgevralkdevkdl 26 (27)
T 3v86_A 2 VYQLKDEVGELKGEVRALKDEVKDL 26 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHhHHHHHHHHHhcc
Confidence 5788999999999999999888765
No 14
>4egw_A Magnesium transport protein CORA; magnesium transporter, magnesium binding, metal transp; 2.50A {Methanocaldococcus jannaschii}
Probab=66.17 E-value=40 Score=31.34 Aligned_cols=35 Identities=14% Similarity=0.204 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHhhhhhhHHHH
Q 014929 314 VDNTLSKLLSLKEYIDDTEDLI----NIKLGNVQNQLIQ 348 (415)
Q Consensus 314 ~d~~~~~l~~l~e~i~~~~d~~----~~~Ld~~rN~imk 348 (415)
+..+...+..+.+.++...+.+ +.+++...|+...
T Consensus 239 l~Dv~dh~~~~~e~~~~~re~l~~l~d~~~s~is~~~N~ 277 (280)
T 4egw_A 239 FEDLYYDTLQLIDMSATYREVLTSMMDITLSLENIKMNQ 277 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556555555555555444443 3444444455443
No 15
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=63.28 E-value=1e+02 Score=29.04 Aligned_cols=63 Identities=19% Similarity=0.338 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHhccCChh--h--------HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014929 159 ELTCMSLDAQVKELGMEIYPVLDELASSISTL--N--------LEHL-RRLKGHLLALTQQVQKVHDEIEHLMD 221 (415)
Q Consensus 159 ~~~~~~Le~~~~~Le~~~~~~ld~L~~~~~~~--~--------Le~l-~~lK~~L~~l~~~v~~vrd~l~~Lld 221 (415)
+.+...+...++++...+.|..++|...+... . .+.+ -+++.++..++.++.|+-+.+..=++
T Consensus 36 ~~l~~~l~~~le~lr~~L~Py~~el~~~~~~~~eelr~kL~p~~~el~~~l~~~~eeLr~~L~p~~eelr~kl~ 109 (273)
T 3s84_A 36 NEVSQKIGDNLRELQQRLEPYADQLRTQVNTQAEQLRRQLTPYAQRMERVLRENADSLQASLRPHADELKAKID 109 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555555555555555554332211 0 1111 13344555666666665555544443
No 16
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=60.55 E-value=12 Score=25.72 Aligned_cols=13 Identities=0% Similarity=0.358 Sum_probs=7.8
Q ss_pred HHHHHHHHHHhcC
Q 014929 399 LYFSFLFYFKHKK 411 (415)
Q Consensus 399 l~~~~~~~frrk~ 411 (415)
+.++.++|+|||+
T Consensus 27 i~~~~~~~~RRr~ 39 (44)
T 2ks1_B 27 VALGIGLFMRRRH 39 (44)
T ss_dssp HHHHHHHHHHTTT
T ss_pred HHHHHHHHhhhhH
Confidence 4445666677665
No 17
>3nvo_A Zinc transport protein ZNTB; alpha-beta-alpha sandwich, zinc efflux system, membrane, TRA protein; 2.30A {Salmonella enterica} PDB: 3nwi_A
Probab=60.27 E-value=30 Score=31.75 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 014929 199 KGHLLALTQQVQKVHDEIEHLMD 221 (415)
Q Consensus 199 K~~L~~l~~~v~~vrd~l~~Lld 221 (415)
.++|..+++.+-.+|..+.-+-+
T Consensus 186 l~~l~~lrr~l~~lrr~l~p~~~ 208 (264)
T 3nvo_A 186 RGFLALLRKQLIVMRRYMAPQRD 208 (264)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHH
Confidence 35678888888888877776644
No 18
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=57.76 E-value=36 Score=29.71 Aligned_cols=30 Identities=17% Similarity=0.222 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 014929 299 NVEQLEMLLEAYFVVV-DNTLSKLLSLKEYI 328 (415)
Q Consensus 299 ~~eelE~LLe~Y~~~~-d~~~~~l~~l~e~i 328 (415)
..+++...+++|..++ ..+...++.|+..+
T Consensus 129 ~~EelR~kl~P~~eeL~~~~~~~~eeLr~kL 159 (165)
T 1gs9_A 129 STEELRVRLASHLRKLRKRLLRDADDLQKRL 159 (165)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Confidence 4455666677888776 55556666666543
No 19
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=56.22 E-value=12 Score=25.76 Aligned_cols=14 Identities=21% Similarity=0.584 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHhcC
Q 014929 398 LLYFSFLFYFKHKK 411 (415)
Q Consensus 398 ~l~~~~~~~frrk~ 411 (415)
++.++.++|+|||+
T Consensus 25 ii~~~~~~~~RRRr 38 (44)
T 2l2t_A 25 IVGLTFAVYVRRKS 38 (44)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhhhhh
Confidence 34445566667665
No 20
>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime disease; NMR {Homo sapiens}
Probab=53.62 E-value=36 Score=32.79 Aligned_cols=70 Identities=20% Similarity=0.322 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCChhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCcc
Q 014929 154 LELALELTCMSLDAQVKELGMEIYPVLDELASSISTLNLEHLR-RLKGHLLALTQQVQKVHDEIEHLMDDDG 224 (415)
Q Consensus 154 LE~iL~~~~~~Le~~~~~Le~~~~~~ld~L~~~~~~~~Le~l~-~lK~~L~~l~~~v~~vrd~l~~LlddD~ 224 (415)
++..++.....+...+..+...+.|..+++...++. ..+.++ ++...+..++.++.|.++.+...+..+-
T Consensus 68 l~~l~~~~~~el~~y~~~l~~qL~P~~~e~~~~l~~-~~~~Lr~~L~~dlEelR~~L~Py~~el~~~l~~~~ 138 (307)
T 2l7b_A 68 LRALMDETMKELKAYKSELEEQLTPVAEETRARLSK-ELQAAQARLGADMEDVCGRLVQYRGEVQAMLGQST 138 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCSCCSSTHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555544444444444444433322222221 233443 5778899999999999999999887654
No 21
>3ck6_A Putative membrane transport protein; APC91421.1, ZNTB, cytoplasmic domain, PSI-2, protein structure initiative; HET: MSE; 1.90A {Vibrio parahaemolyticus rimd 2210633} PDB: 3bhc_A*
Probab=52.68 E-value=28 Score=31.71 Aligned_cols=56 Identities=7% Similarity=0.057 Sum_probs=31.1
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHhhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 014929 153 ALELALELTCM---SLDAQVKELGMEIYPVLDELASSISTLNLEHLRRLKGHLLALTQQVQKVHD 214 (415)
Q Consensus 153 aLE~iL~~~~~---~Le~~~~~Le~~~~~~ld~L~~~~~~~~Le~l~~lK~~L~~l~~~v~~vrd 214 (415)
+++.+++.+.. .++.+++++|+. .+.+.+|. .-...+..+|+.+..++.-+..+..
T Consensus 141 lld~ivd~y~~~l~~l~~~id~lE~~-~~~~~~l~-----~lrr~l~~lrr~l~p~r~~l~~L~r 199 (252)
T 3ck6_A 141 IIEGLNGKIDLYLDTIEETLNEFDVN-DESTYNHI-----AAQKALISIKRFIRPQQYAIRDLIE 199 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCTT-CGGGCCHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcC-chHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67777776655 455666667665 33322221 0123466677777766666666543
No 22
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=52.19 E-value=1.1e+02 Score=26.89 Aligned_cols=23 Identities=13% Similarity=0.242 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 014929 197 RLKGHLLALTQQVQKVHDEIEHL 219 (415)
Q Consensus 197 ~lK~~L~~l~~~v~~vrd~l~~L 219 (415)
.+.+++-.++.++.|+-+.+..=
T Consensus 108 ~~~~~~e~lr~~l~Py~~el~~~ 130 (185)
T 3r2p_A 108 KWQEEMELYRQKVEPLRAELQEG 130 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666655543
No 23
>2k21_A Potassium voltage-gated channel subfamily E member; KCNE1, membrane protein, potassium channel, MINK, auxilliary subunit, micelles, ION transport; NMR {Homo sapiens}
Probab=51.07 E-value=11 Score=31.85 Aligned_cols=29 Identities=28% Similarity=0.402 Sum_probs=25.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 014929 383 SAFHWVLVITGLAGCLLYFSFLFYFKHKK 411 (415)
Q Consensus 383 ~gf~~v~~~~~~~~~~l~~~~~~~frrk~ 411 (415)
++|.+++.+|++.+++++.+|+.|.|-||
T Consensus 51 ~~ylYIL~vmgffgff~~GImLsYiRSKk 79 (138)
T 2k21_A 51 LEALYVLMVLGFFGFFTLGIMLSYIRSKK 79 (138)
T ss_dssp STTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeehHHHHHHHHHHHHHHHHHHHhHhhh
Confidence 67888888888888888889999999776
No 24
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=49.75 E-value=35 Score=23.41 Aligned_cols=18 Identities=17% Similarity=0.141 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHhcCC
Q 014929 395 AGCLLYFSFLFYFKHKKV 412 (415)
Q Consensus 395 ~~~~l~~~~~~~frrk~w 412 (415)
+.+++.++..+|+|||+-
T Consensus 23 l~vi~~l~~~~~~RRR~~ 40 (44)
T 2jwa_A 23 LVVVLGVVFGILIKRRQQ 40 (44)
T ss_dssp HHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHhheehhhh
Confidence 334455567778888763
No 25
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=48.41 E-value=69 Score=24.35 Aligned_cols=47 Identities=19% Similarity=0.255 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 014929 160 LTCMSLDAQVKELGMEIYPVLDELASSISTLNLEHLRRLKGHLLALTQQVQKVHD 214 (415)
Q Consensus 160 ~~~~~Le~~~~~Le~~~~~~ld~L~~~~~~~~Le~l~~lK~~L~~l~~~v~~vrd 214 (415)
+-+..|+..++.|......++.+.++ .=.++|+++..|..++.++++
T Consensus 7 EKv~~LE~sld~LQTrfARLLaEy~s--------sQ~KLKqRit~LE~~~~~~~~ 53 (74)
T 3swf_A 7 EKVTRMESSVDLLQTRFARILAEYES--------MQQKLKQRLTKVEKFLKPLID 53 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHhcccCC
Confidence 33444444444554444444444332 125789999999999988554
No 26
>1txp_A HnRNP C, heterogeneous nuclear ribonucleoprotein C protein; antiparallel four helix coiled coil tetramer HNRNPC, signaling protein; NMR {Homo sapiens}
Probab=45.77 E-value=20 Score=22.07 Aligned_cols=24 Identities=21% Similarity=0.466 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 014929 196 RRLKGHLLALTQQVQKVHDEIEHL 219 (415)
Q Consensus 196 ~~lK~~L~~l~~~v~~vrd~l~~L 219 (415)
..+|++|..++.+|..+-+-++++
T Consensus 2 Q~IkkELtQIK~kvDsLLe~Le~~ 25 (28)
T 1txp_A 2 QAIKKELTQIKQKVDSLLENLEKI 25 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhh
Confidence 468999999999999888877765
No 27
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=43.68 E-value=20 Score=23.72 Aligned_cols=7 Identities=14% Similarity=0.448 Sum_probs=2.6
Q ss_pred HHHHHhc
Q 014929 404 LFYFKHK 410 (415)
Q Consensus 404 ~~~frrk 410 (415)
.+|+.||
T Consensus 31 ~~~~~rr 37 (38)
T 2k1k_A 31 LVFRSRR 37 (38)
T ss_dssp HHHHHCC
T ss_pred HHHHeec
Confidence 3333333
No 28
>3p8c_D Wiskott-aldrich syndrome protein family member 1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=43.42 E-value=50 Score=31.43 Aligned_cols=57 Identities=16% Similarity=0.141 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHH
Q 014929 153 ALELALELTCMSLDAQVKELGMEIYPVLDELASSISTLNLEHLRRLKGHLLALTQQVQ 210 (415)
Q Consensus 153 aLE~iL~~~~~~Le~~~~~Le~~~~~~ld~L~~~~~~~~Le~l~~lK~~L~~l~~~v~ 210 (415)
.||++-......+-.++..|...+.++..+|...+.. .-+|+..|+.++..|...|.
T Consensus 25 eLe~V~n~tL~gilRQL~dLs~~A~dIF~eL~~e~~~-~~~R~~~L~~RI~~L~~~v~ 81 (279)
T 3p8c_D 25 ELECVTNISLANIIRQLSSLSKYAEDIFGELFNEAHS-FSFRVNSLQERVDRLSVSVT 81 (279)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcc
Confidence 3889988888888899999999999999988765432 23445555555555444443
No 29
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=43.02 E-value=34 Score=24.48 Aligned_cols=7 Identities=29% Similarity=0.382 Sum_probs=4.6
Q ss_pred HHHHhcC
Q 014929 405 FYFKHKK 411 (415)
Q Consensus 405 ~~frrk~ 411 (415)
.||||++
T Consensus 34 GFFKR~~ 40 (54)
T 2l8s_A 34 GFFKRPL 40 (54)
T ss_dssp HHTTSCC
T ss_pred CcccCCC
Confidence 5677765
No 30
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=43.00 E-value=61 Score=28.87 Aligned_cols=31 Identities=16% Similarity=0.211 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 014929 299 NVEQLEMLLEAYFVVV-DNTLSKLLSLKEYID 329 (415)
Q Consensus 299 ~~eelE~LLe~Y~~~~-d~~~~~l~~l~e~i~ 329 (415)
+++++..-|.+|..++ ..+...++.+++.+.
T Consensus 129 ~~Eelr~~L~Py~eelr~kl~~~~eeLr~~l~ 160 (191)
T 1nfn_A 129 STEELRVRLASHLRKLRKRLLRDADDLQKRLA 160 (191)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhH
Confidence 5566666677777766 556666666666544
No 31
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=35.24 E-value=59 Score=21.97 Aligned_cols=11 Identities=27% Similarity=0.712 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 014929 387 WVLVITGLAGC 397 (415)
Q Consensus 387 ~v~~~~~~~~~ 397 (415)
|++.+++++++
T Consensus 11 wiIi~s~l~GL 21 (42)
T 2k1a_A 11 WWVLVGVLGGL 21 (42)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333444333
No 32
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=35.15 E-value=1.4e+02 Score=22.16 Aligned_cols=29 Identities=31% Similarity=0.371 Sum_probs=23.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014929 191 NLEHLRRLKGHLLALTQQVQKVHDEIEHL 219 (415)
Q Consensus 191 ~Le~l~~lK~~L~~l~~~v~~vrd~l~~L 219 (415)
+-+.+...|.++.++++.++.+.-.|+.+
T Consensus 47 ~~~~l~~~k~Ei~elrr~iq~L~~el~sl 75 (77)
T 3trt_A 47 NNDALRQAKQESTEYRRQVQSLTMEVDAL 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34668888999999999999988888765
No 33
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=34.78 E-value=38 Score=24.21 Aligned_cols=7 Identities=29% Similarity=0.676 Sum_probs=4.3
Q ss_pred HHHHhcC
Q 014929 405 FYFKHKK 411 (415)
Q Consensus 405 ~~frrk~ 411 (415)
.||||++
T Consensus 37 GFFkR~~ 43 (54)
T 2knc_A 37 GFFKRNR 43 (54)
T ss_dssp HHTTTTC
T ss_pred CcccCCC
Confidence 4666664
No 34
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=31.80 E-value=34 Score=24.50 Aligned_cols=28 Identities=25% Similarity=0.608 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 014929 387 WVLVITGLAGCLLYFSFLFYFKHKKVFP 414 (415)
Q Consensus 387 ~v~~~~~~~~~~l~~~~~~~frrk~wl~ 414 (415)
|++++++++++++..++.+.++|-++|.
T Consensus 10 WiIi~svl~GLLLL~Lii~~LwK~GFFK 37 (54)
T 2l8s_A 10 WVILLSAFAGLLLLMLLILALWKIGFFK 37 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCccc
Confidence 4444445545444444445555666653
No 35
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=31.07 E-value=4e+02 Score=29.98 Aligned_cols=19 Identities=16% Similarity=0.073 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 014929 314 VDNTLSKLLSLKEYIDDTE 332 (415)
Q Consensus 314 ~d~~~~~l~~l~e~i~~~~ 332 (415)
+.++-+....|++.+++++
T Consensus 1025 v~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 1025 VSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555554
No 36
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=27.76 E-value=1.4e+02 Score=26.03 Aligned_cols=27 Identities=15% Similarity=0.291 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCc
Q 014929 197 RLKGHLLALTQQVQKVHDEIEHLMDDD 223 (415)
Q Consensus 197 ~lK~~L~~l~~~v~~vrd~l~~LlddD 223 (415)
++.+.+..++.++.|..+.+...+..+
T Consensus 86 ~l~kdlee~r~~l~P~~~e~~~~~~~~ 112 (185)
T 3r2p_A 86 EMSKDLEEVKAKVQPYLDDFQKKWQEE 112 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHh
Confidence 456677888888888888887776543
No 37
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=26.58 E-value=1.6e+02 Score=23.13 Aligned_cols=22 Identities=18% Similarity=0.299 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHH
Q 014929 192 LEHLRRLKGHLLA-LTQQVQKVH 213 (415)
Q Consensus 192 Le~l~~lK~~L~~-l~~~v~~vr 213 (415)
..+|+..|+.|.. +++.++.+.
T Consensus 71 ~~klr~Yk~dl~~~lk~~lk~l~ 93 (97)
T 3onj_A 71 KAKLREWKKTIQSDIKRPLQSLV 93 (97)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 3566777666666 666655543
No 38
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=25.54 E-value=5.8e+02 Score=26.39 Aligned_cols=27 Identities=15% Similarity=0.047 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014929 313 VVDNTLSKLLSLKEYIDDTEDLINIKL 339 (415)
Q Consensus 313 ~~d~~~~~l~~l~e~i~~~~d~~~~~L 339 (415)
++..+.+.|+.++..|.-+|--|++++
T Consensus 132 nIrvLQsnLedq~~kIQRLEvDIdiqi 158 (562)
T 3ghg_A 132 HIQLLQKNVRAQLVDMKRLEVDIDIKI 158 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555555554
No 39
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=25.20 E-value=2.7e+02 Score=23.09 Aligned_cols=63 Identities=17% Similarity=0.152 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCChhh--HHHHHHHHHHHHHHHHHHHHHHHHH
Q 014929 150 EFRALELALELTCMSLDAQVKELGMEIYPVLDELASSISTLN--LEHLRRLKGHLLALTQQVQKVHDEI 216 (415)
Q Consensus 150 E~raLE~iL~~~~~~Le~~~~~Le~~~~~~ld~L~~~~~~~~--Le~l~~lK~~L~~l~~~v~~vrd~l 216 (415)
|+.-+-.=|...|..++..+++|++.+.-+. .+...-+ -..|.+=|+-+..++..|..+++.|
T Consensus 64 E~~~~~~EL~~~l~sie~dLeDLe~sI~ivE----~np~kF~l~~~Ei~~Rr~fV~~~r~~I~~mk~~l 128 (130)
T 4dnd_A 64 ELDWTTNELRNGLRSIEWDLEDLEETIGIVE----ANPGKFKLPAGDLQERKVFVERMREAVQEMKDHM 128 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hCHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555666677778888888888887775443 2221111 2345566666777777777777665
No 40
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=24.88 E-value=1.6e+02 Score=20.18 Aligned_cols=13 Identities=31% Similarity=0.388 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHH
Q 014929 196 RRLKGHLLALTQQ 208 (415)
Q Consensus 196 ~~lK~~L~~l~~~ 208 (415)
.++|+++..++.+
T Consensus 33 ~KlKqRit~lE~~ 45 (46)
T 3swy_A 33 MKMKQRLSQLESQ 45 (46)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 4567777766654
No 41
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=24.15 E-value=2.6e+02 Score=21.98 Aligned_cols=23 Identities=13% Similarity=0.213 Sum_probs=16.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 014929 191 NLEHLRRLKGHLLALTQQVQKVH 213 (415)
Q Consensus 191 ~Le~l~~lK~~L~~l~~~v~~vr 213 (415)
-..+|+..|+.|..|++.++.++
T Consensus 72 ~~~klr~Yk~dL~~lk~elk~~~ 94 (102)
T 1vcs_A 72 YSNRMRSYKQEMGKLETDFKRSR 94 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678888888888777766543
No 42
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=23.76 E-value=2.6e+02 Score=29.11 Aligned_cols=88 Identities=11% Similarity=0.127 Sum_probs=45.1
Q ss_pred HHHHHhccCCC--CCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCChhhHHHHHHH----HHHHHHH
Q 014929 132 ELCKRLQTNKD--QADDLPFEFRALELALELTCMSLDAQVKELGMEIYPVLDELASSISTLNLEHLRRL----KGHLLAL 205 (415)
Q Consensus 132 ~L~~rL~~~~~--~~~~LpFE~raLE~iL~~~~~~Le~~~~~Le~~~~~~ld~L~~~~~~~~Le~l~~l----K~~L~~l 205 (415)
+++..+++..+ .+...||. ++|.++...+..++.-....-+.++..+.....++....+.+--.| ++.+..+
T Consensus 407 ~i~~~~~~~~g~~~~~f~~~~--~fe~lvk~qi~~l~~Pa~~~v~~V~~~v~~~~~~~~~~~f~rfp~L~~~~~~~i~~~ 484 (608)
T 3szr_A 407 KIQKFENQAAAAELPGFVNYR--TFETIVKQQIKALEEPAVDMLHTVTDMVRLAFTDVSIKNFEEFFNLHRTAKSKIEDI 484 (608)
T ss_dssp HHHHHHHHCCSCSSSCSSCTH--HHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCCCCCccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 34443444332 34566774 8888888887777666655554444444443333322233321122 3333333
Q ss_pred -HHHHHHHHHHHHHHHh
Q 014929 206 -TQQVQKVHDEIEHLMD 221 (415)
Q Consensus 206 -~~~v~~vrd~l~~Lld 221 (415)
++..++.++.+..+.+
T Consensus 485 ~~~~~~~a~~~i~~li~ 501 (608)
T 3szr_A 485 RAEQEREGEKLIRLHFQ 501 (608)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 3345566666666664
No 43
>1t3u_A Conserved hypothetical protein; NYSGXRC, unknown ORF, COG3027, PSI, protein structure initiative; 2.50A {Pseudomonas aeruginosa PAO1} SCOP: d.244.1.1 PDB: 1w2e_A
Probab=21.10 E-value=1.8e+02 Score=22.80 Aligned_cols=23 Identities=9% Similarity=0.283 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhCcc
Q 014929 202 LLALTQQVQKVHDEIEHLMDDDG 224 (415)
Q Consensus 202 L~~l~~~v~~vrd~l~~LlddD~ 224 (415)
+..+..++..+.+.|++.|.++.
T Consensus 77 ~~~~~~~i~~L~~~le~aL~~~~ 99 (104)
T 1t3u_A 77 SSSTRERVRELLDRVDRALANPA 99 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHhccc
Confidence 45556666667777777766543
No 44
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=21.06 E-value=2.7e+02 Score=27.61 Aligned_cols=51 Identities=8% Similarity=0.210 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014929 155 ELALELTCMSLDAQVKELGMEIYPVLDELASSISTLNLEHLRRLKGHLLALTQQVQKVHDEIE 217 (415)
Q Consensus 155 E~iL~~~~~~Le~~~~~Le~~~~~~ld~L~~~~~~~~Le~l~~lK~~L~~l~~~v~~vrd~l~ 217 (415)
|.++.+|...|+.++..|...+.. ++.+|+.|+..|..++..++++--.|+
T Consensus 108 dn~~~e~s~eLe~~i~~lk~~V~~------------q~~~ir~Lq~~l~~q~~kiqRLE~~Id 158 (390)
T 1deq_A 108 DNTFKQINEDLRSRIEILRRKVIE------------QVQRINLLQKNVRDQLVDMKRLEVDID 158 (390)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH------------HhHHHHHHHHHHHHHHHHHHHHHHHHH
No 45
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=20.95 E-value=3.5e+02 Score=26.48 Aligned_cols=57 Identities=12% Similarity=0.110 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHhccCChh-hHHHHHHHHHHHHHHHHHHHHHHHH
Q 014929 159 ELTCMSLDAQVKELGMEIYPVLDELASSISTL-NLEHLRRLKGHLLALTQQVQKVHDE 215 (415)
Q Consensus 159 ~~~~~~Le~~~~~Le~~~~~~ld~L~~~~~~~-~Le~l~~lK~~L~~l~~~v~~vrd~ 215 (415)
+.+...++.+++.++.++..+...+..+..+. ...++..+.+++..+.+++..+++.
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (426)
T 1lrz_A 246 DEYIKELNEERDILNKDLNKALKDIEKRPENKKAHNKRDNLQQQLDANEQKIEEGKRL 303 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888888888888887666543 3456777888888887777755443
No 46
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=20.64 E-value=49 Score=21.55 Aligned_cols=14 Identities=14% Similarity=0.280 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHhcC
Q 014929 398 LLYFSFLFYFKHKK 411 (415)
Q Consensus 398 ~l~~~~~~~frrk~ 411 (415)
++..+..+|+|||+
T Consensus 22 ii~l~~~~~iRRr~ 35 (35)
T 1iij_A 22 ILVVVVGILIKRRR 35 (35)
T ss_dssp HHTTTTTHHHHHCC
T ss_pred HHHHHhheEEeecC
Confidence 33345677888875
No 47
>2ca5_A MXIH; transport protein, type III secretion system, needle complex, protein transport, virulence; 2.10A {Shigella flexneri} SCOP: a.2.20.1 PDB: 2v6l_0 3j0r_A
Probab=20.36 E-value=3.1e+02 Score=21.30 Aligned_cols=64 Identities=19% Similarity=0.211 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHhccCChhh-HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHh
Q 014929 158 LELTCMSLDAQVKELGMEIYPVLDELASSISTLN-LEHLRRLKGHLLAL----TQQVQKVHDEIEHLMD 221 (415)
Q Consensus 158 L~~~~~~Le~~~~~Le~~~~~~ld~L~~~~~~~~-Le~l~~lK~~L~~l----~~~v~~vrd~l~~Lld 221 (415)
|+.+...++..+..+...+..++++|..+++... |-+....-.+..-+ ...++.++|....+|+
T Consensus 12 Ld~v~~~f~~ga~~~~~~v~~Ai~~L~~~PsnPa~LAeyQ~kl~eysl~rNaqSttiKa~KDi~~sI~~ 80 (85)
T 2ca5_A 12 LSSLSETFDDGTQTLQGELTLALDKLAKNPSNPQLLAEYQSKLSEYTLYRNAQSNTVKVIKDVDAAILE 80 (85)
T ss_dssp --------CCHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888888999999999999999998876543 22222222222222 3445556666666665
No 48
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=20.20 E-value=1.1e+02 Score=23.29 Aligned_cols=18 Identities=22% Similarity=0.209 Sum_probs=9.9
Q ss_pred HHHHHHHHHHhhHHHHHH
Q 014929 164 SLDAQVKELGMEIYPVLD 181 (415)
Q Consensus 164 ~Le~~~~~Le~~~~~~ld 181 (415)
.+++++.+||..+.-..+
T Consensus 11 ~le~Ri~~LE~klAfqE~ 28 (78)
T 3efg_A 11 ELEARLVELETRLSFQEQ 28 (78)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455566666666554333
No 49
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=20.19 E-value=6.7e+02 Score=25.19 Aligned_cols=23 Identities=4% Similarity=-0.077 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 014929 312 VVVDNTLSKLLSLKEYIDDTEDL 334 (415)
Q Consensus 312 ~~~d~~~~~l~~l~e~i~~~~d~ 334 (415)
.++.++.+..+.++..+..+++-
T Consensus 558 ~~~~~l~~e~~~~~~~~~~l~~~ 580 (597)
T 3oja_B 558 AKQAELRQETSLKRQKVKQLEAK 580 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444333
Done!