BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014930
(415 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XJE|A Chain A, Crystal Structure Of The D52n Variant Of Cytosolic
5'-Nucleotidase Ii In Complex With Uridine
5'-Monophosphate And Adenosine Triphosphate
Length = 555
Score = 151 bits (382), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 115/423 (27%), Positives = 189/423 (44%), Gaps = 36/423 (8%)
Query: 7 YPEVCISFKYDPNFPIRGLYYDKQKGCLLKLDFFGSIEPDGCYFGRRKLSRKEIAEIYGT 66
YP+ +SF YD FP RGL +D G LLK+D +G++ C G + E E Y
Sbjct: 101 YPQELLSFAYDSTFPTRGLVFDTLYGNLLKVDAYGNLLV--CAHGFNFIRGPETREQYPN 158
Query: 67 RHIGRDQARGLVGLMDFFCFTEACLIADIVQYFV-------------DAKLEFDASYIYE 113
+ I RD L F E L+A +V +F D L +++
Sbjct: 159 KFIQRDDTERFYILNTLFNLPETYLLACLVDFFTNCPRYTSCETGFKDGDLFMSYRSMFQ 218
Query: 114 DVNRAIQHVHRRGLVHRGILSDPNRYLVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDG 173
DV A+ VH +G + + + +Y+VK+G++ + ++E G K+FL TNS Y + D
Sbjct: 219 DVRDAVDWVHYKGSLKEKTVENLEKYVVKDGKLPLLLSRMKEVG-KVFLATNSDYKYTDK 277
Query: 174 GMRFMLEDSTGYTDS-----WRELFDVVIAQANKPDFYTSDHPFRCYDTEKDTLAFTKVD 228
M ++ + G W+ FD+++ A KP F+ R DT+ L
Sbjct: 278 IMTYLFDFPHGPKPGSSHRPWQSYFDLILVDARKPLFFGEGTVLRQVDTKTGKLKIGTYT 337
Query: 229 AFIPNKIYYH-GCLKSFLQITKWNGPEVIYFGDHLFSD-LRGPSKAGWRTAAIIHELESE 286
+ + I Y G + + G +++Y GDH+F D L+ + GWRT +I EL E
Sbjct: 338 GPLQHGIVYSGGSSDTICDLLGAKGKDILYIGDHIFGDILKSKKRQGWRTFLVIPELAQE 397
Query: 287 IRIQNDETYRFE--QAKFHIIQELLGKLHATVANSQRTEACQLLLAELNEERQKARRMMK 344
+ + D++ FE Q+ + EL L ++ + Q + ++ + MM
Sbjct: 398 LHVWTDKSSLFEELQSLDIFLAELYKHLDSSSNERPDISSIQRRIKKVTHDMDMCYGMMG 457
Query: 345 KMFNKSFGATFLTDTGQESAFAYHIHRYADVYTSKAENFLLYPPEAWLHVPFDIKIMPHH 404
+F +++ FA + RYAD+Y + N LLY P ++L + +MPH
Sbjct: 458 SLFRSG---------SRQTLFASQVMRYADLYAASFIN-LLYYPFSYLFRAAHV-LMPHE 506
Query: 405 VKV 407
V
Sbjct: 507 STV 509
>pdb|2J2C|A Chain A, Crystal Structure Of Human Cytosolic 5'-Nucleotidase Ii
(Nt5c2, Cn-Ii)
pdb|2JC9|A Chain A, Crystal Structure Of Human Cytosolic 5'-Nucleotidase Ii In
Complex With Adenosine
pdb|4H4B|A Chain A, Human Cytosolic 5'-nucleotidase Ii In Complex With
Anthraquinone-2,6- Disulfonic Acid
Length = 555
Score = 151 bits (382), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 115/423 (27%), Positives = 189/423 (44%), Gaps = 36/423 (8%)
Query: 7 YPEVCISFKYDPNFPIRGLYYDKQKGCLLKLDFFGSIEPDGCYFGRRKLSRKEIAEIYGT 66
YP+ +SF YD FP RGL +D G LLK+D +G++ C G + E E Y
Sbjct: 101 YPQELLSFAYDSTFPTRGLVFDTLYGNLLKVDAYGNLLV--CAHGFNFIRGPETREQYPN 158
Query: 67 RHIGRDQARGLVGLMDFFCFTEACLIADIVQYFV-------------DAKLEFDASYIYE 113
+ I RD L F E L+A +V +F D L +++
Sbjct: 159 KFIQRDDTERFYILNTLFNLPETYLLACLVDFFTNCPRYTSCETGFKDGDLFMSYRSMFQ 218
Query: 114 DVNRAIQHVHRRGLVHRGILSDPNRYLVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDG 173
DV A+ VH +G + + + +Y+VK+G++ + ++E G K+FL TNS Y + D
Sbjct: 219 DVRDAVDWVHYKGSLKEKTVENLEKYVVKDGKLPLLLSRMKEVG-KVFLATNSDYKYTDK 277
Query: 174 GMRFMLEDSTGYTDS-----WRELFDVVIAQANKPDFYTSDHPFRCYDTEKDTLAFTKVD 228
M ++ + G W+ FD+++ A KP F+ R DT+ L
Sbjct: 278 IMTYLFDFPHGPKPGSSHRPWQSYFDLILVDARKPLFFGEGTVLRQVDTKTGKLKIGTYT 337
Query: 229 AFIPNKIYYH-GCLKSFLQITKWNGPEVIYFGDHLFSD-LRGPSKAGWRTAAIIHELESE 286
+ + I Y G + + G +++Y GDH+F D L+ + GWRT +I EL E
Sbjct: 338 GPLQHGIVYSGGSSDTICDLLGAKGKDILYIGDHIFGDILKSKKRQGWRTFLVIPELAQE 397
Query: 287 IRIQNDETYRFE--QAKFHIIQELLGKLHATVANSQRTEACQLLLAELNEERQKARRMMK 344
+ + D++ FE Q+ + EL L ++ + Q + ++ + MM
Sbjct: 398 LHVWTDKSSLFEELQSLDIFLAELYKHLDSSSNERPDISSIQRRIKKVTHDMDMCYGMMG 457
Query: 345 KMFNKSFGATFLTDTGQESAFAYHIHRYADVYTSKAENFLLYPPEAWLHVPFDIKIMPHH 404
+F +++ FA + RYAD+Y + N LLY P ++L + +MPH
Sbjct: 458 SLFRSG---------SRQTLFASQVMRYADLYAASFIN-LLYYPFSYLFRAAHV-LMPHE 506
Query: 405 VKV 407
V
Sbjct: 507 STV 509
>pdb|2XCV|A Chain A, Crystal Structure Of The D52n Variant Of Cytosolic 5'-
Nucleotidase Ii In Complex With Inosine Monophosphate
And 2,3-Bisphosphoglycerate
pdb|2XCW|A Chain A, Crystal Structure Of The D52n Variant Of Cytosolic
5'-Nucleotidase Ii In Complex With Inosine Monophosphate
And Atp
pdb|2XCX|A Chain A, Crystal Structure Of The Apoform Of The D52n Variant Of
Cytosolic 5'- Nucleotidase Ii
pdb|2XJB|A Chain A, Crystal Structure Of The D52n Variant Of Cytosolic
5'-Nucleotidase Ii In Complex With Deoxyguanosine
Monophosphate And Deoxyadenosine Triphosphate
pdb|2XJC|A Chain A, Crystal Structure Of The D52n Variant Of Cytosolic
5'-Nucleotidase Ii In Complex With Guanosine
Monophosphate And Diadenosine Tetraphosphate
pdb|2XJD|A Chain A, Crystal Structure Of The D52n Variant Of Cytosolic 5'-
Nucleotidase Ii In Complex With Inorganic Phosphate And
Deoxyadenosine Triphosphate
Length = 554
Score = 151 bits (382), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 115/423 (27%), Positives = 189/423 (44%), Gaps = 36/423 (8%)
Query: 7 YPEVCISFKYDPNFPIRGLYYDKQKGCLLKLDFFGSIEPDGCYFGRRKLSRKEIAEIYGT 66
YP+ +SF YD FP RGL +D G LLK+D +G++ C G + E E Y
Sbjct: 100 YPQELLSFAYDSTFPTRGLVFDTLYGNLLKVDAYGNLLV--CAHGFNFIRGPETREQYPN 157
Query: 67 RHIGRDQARGLVGLMDFFCFTEACLIADIVQYFV-------------DAKLEFDASYIYE 113
+ I RD L F E L+A +V +F D L +++
Sbjct: 158 KFIQRDDTERFYILNTLFNLPETYLLACLVDFFTNCPRYTSCETGFKDGDLFMSYRSMFQ 217
Query: 114 DVNRAIQHVHRRGLVHRGILSDPNRYLVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDG 173
DV A+ VH +G + + + +Y+VK+G++ + ++E G K+FL TNS Y + D
Sbjct: 218 DVRDAVDWVHYKGSLKEKTVENLEKYVVKDGKLPLLLSRMKEVG-KVFLATNSDYKYTDK 276
Query: 174 GMRFMLEDSTGYTDS-----WRELFDVVIAQANKPDFYTSDHPFRCYDTEKDTLAFTKVD 228
M ++ + G W+ FD+++ A KP F+ R DT+ L
Sbjct: 277 IMTYLFDFPHGPKPGSSHRPWQSYFDLILVDARKPLFFGEGTVLRQVDTKTGKLKIGTYT 336
Query: 229 AFIPNKIYYH-GCLKSFLQITKWNGPEVIYFGDHLFSD-LRGPSKAGWRTAAIIHELESE 286
+ + I Y G + + G +++Y GDH+F D L+ + GWRT +I EL E
Sbjct: 337 GPLQHGIVYSGGSSDTICDLLGAKGKDILYIGDHIFGDILKSKKRQGWRTFLVIPELAQE 396
Query: 287 IRIQNDETYRFE--QAKFHIIQELLGKLHATVANSQRTEACQLLLAELNEERQKARRMMK 344
+ + D++ FE Q+ + EL L ++ + Q + ++ + MM
Sbjct: 397 LHVWTDKSSLFEELQSLDIFLAELYKHLDSSSNERPDISSIQRRIKKVTHDMDMCYGMMG 456
Query: 345 KMFNKSFGATFLTDTGQESAFAYHIHRYADVYTSKAENFLLYPPEAWLHVPFDIKIMPHH 404
+F +++ FA + RYAD+Y + N LLY P ++L + +MPH
Sbjct: 457 SLFRSG---------SRQTLFASQVMRYADLYAASFIN-LLYYPFSYLFRAAHV-LMPHE 505
Query: 405 VKV 407
V
Sbjct: 506 STV 508
>pdb|2JCM|A Chain A, Crystal Structure Of Human Cytosolic 5'-Nucleotidase Ii In
Complex With Beryllium Trifluoride
pdb|2XJF|A Chain A, Crystal Structure Of The D52n Variant Of Cytosolic 5'-
Nucleotidase Ii With A Covalently Modified Asn52
Length = 555
Score = 151 bits (382), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 115/423 (27%), Positives = 189/423 (44%), Gaps = 36/423 (8%)
Query: 7 YPEVCISFKYDPNFPIRGLYYDKQKGCLLKLDFFGSIEPDGCYFGRRKLSRKEIAEIYGT 66
YP+ +SF YD FP RGL +D G LLK+D +G++ C G + E E Y
Sbjct: 101 YPQELLSFAYDSTFPTRGLVFDTLYGNLLKVDAYGNLLV--CAHGFNFIRGPETREQYPN 158
Query: 67 RHIGRDQARGLVGLMDFFCFTEACLIADIVQYFV-------------DAKLEFDASYIYE 113
+ I RD L F E L+A +V +F D L +++
Sbjct: 159 KFIQRDDTERFYILNTLFNLPETYLLACLVDFFTNCPRYTSCETGFKDGDLFMSYRSMFQ 218
Query: 114 DVNRAIQHVHRRGLVHRGILSDPNRYLVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDG 173
DV A+ VH +G + + + +Y+VK+G++ + ++E G K+FL TNS Y + D
Sbjct: 219 DVRDAVDWVHYKGSLKEKTVENLEKYVVKDGKLPLLLSRMKEVG-KVFLATNSDYKYTDK 277
Query: 174 GMRFMLEDSTGYTDS-----WRELFDVVIAQANKPDFYTSDHPFRCYDTEKDTLAFTKVD 228
M ++ + G W+ FD+++ A KP F+ R DT+ L
Sbjct: 278 IMTYLFDFPHGPKPGSSHRPWQSYFDLILVDARKPLFFGEGTVLRQVDTKTGKLKIGTYT 337
Query: 229 AFIPNKIYYH-GCLKSFLQITKWNGPEVIYFGDHLFSD-LRGPSKAGWRTAAIIHELESE 286
+ + I Y G + + G +++Y GDH+F D L+ + GWRT +I EL E
Sbjct: 338 GPLQHGIVYSGGSSDTICDLLGAKGKDILYIGDHIFGDILKSKKRQGWRTFLVIPELAQE 397
Query: 287 IRIQNDETYRFE--QAKFHIIQELLGKLHATVANSQRTEACQLLLAELNEERQKARRMMK 344
+ + D++ FE Q+ + EL L ++ + Q + ++ + MM
Sbjct: 398 LHVWTDKSSLFEELQSLDIFLAELYKHLDSSSNERPDISSIQRRIKKVTHDMDMCYGMMG 457
Query: 345 KMFNKSFGATFLTDTGQESAFAYHIHRYADVYTSKAENFLLYPPEAWLHVPFDIKIMPHH 404
+F +++ FA + RYAD+Y + N LLY P ++L + +MPH
Sbjct: 458 SLFRSG---------SRQTLFASQVMRYADLYAASFIN-LLYYPFSYLFRAAHV-LMPHE 506
Query: 405 VKV 407
V
Sbjct: 507 STV 509
>pdb|2BDE|A Chain A, Crystal Structure Of The Cytosolic Imp-Gmp Specific
5'-Nucleotidase (Lpg0095) From Legionella Pneumophila,
Northeast Structural Genomics Target Lgr1
Length = 470
Score = 132 bits (332), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 109/425 (25%), Positives = 189/425 (44%), Gaps = 23/425 (5%)
Query: 1 MVNEFRYPEVCISFKYDPNFPIRGLYYDKQKGCLLKLDFFGSIEPDGCYFGRRKLSRKEI 60
+ F YPE FK++ + IRGL D + G +LKL +G+I Y G +++S +
Sbjct: 48 LAESFHYPEEIKKFKFNFDDAIRGLVIDSKNGNILKLSRYGAIRL--SYHGTKQISFSDQ 105
Query: 61 AEIYGTRHIGRDQARGLVGLMDFFCFTEACLIADIVQYFVDAKLEFDASY--IYEDVNRA 118
+IY R I D +D C++ + D + SY I +DV
Sbjct: 106 KKIY--RSIYVDLGDPNYXAIDTSFSIAFCILYGQLVDLKDTNPDKXPSYQAIAQDVQYC 163
Query: 119 IQHVHRRGLVHRGILSDPNRYLVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFM 178
+ VH G + I+ + +Y+++ +V++ +K GKK+F+LTNS Y + + +
Sbjct: 164 VDKVHSDGTLKNIIIKNLKKYVIREKEVVEGLKHFIRYGKKIFILTNSEYSYSKLLLDYA 223
Query: 179 LEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDTEKDTLAFTKVDAFIPNKIYYH 238
L + W+ LF+ VI ANKP F+ + F + E T T V I +Y
Sbjct: 224 LSPFLDKGEHWQGLFEFVITLANKPRFFYDNLRFLSVNPENGTX--TNVHGPIVPGVYQG 281
Query: 239 GCLKSFLQITKWNGPEVIYFGDHLFSD-LRGPSKAGWRTAAIIHELESEIRIQ------N 291
G K F + G E++Y GDH++ D LR WRTA ++ EL EI Q
Sbjct: 282 GNAKKFTEDLGVGGDEILYIGDHIYGDILRLKKDCNWRTALVVEELGEEIASQIRALPIE 341
Query: 292 DETYRFEQAKFHIIQELLGKLHATVANS-----QRTEACQLLLAELNEERQKARRMMKKM 346
+ K + Q+ + ++ S Q QL ++ ++ + + +
Sbjct: 342 KKIGEAXAIKKELEQKYVDLCTRSIDESSQQYDQEIHDLQLQISTVDLQISRLLQEQNSF 401
Query: 347 FNKSFGATFLTDTGQESAFAYHIHRYADVYTSKAENFLLYPPEAWLHVPFDIKIMPHHVK 406
+N + F +ES FAY + R+A +Y K + L + P + + +++ H +
Sbjct: 402 YNPKWERVFRA-GAEESYFAYQVDRFACIYXEKLSDLLEHSPXTYFRA--NRRLLAHDID 458
Query: 407 VPSSL 411
+ ++L
Sbjct: 459 IAAAL 463
>pdb|4G63|A Chain A, Crystal Structure Of Cytosolic Imp-Gmp Specific
5'-Nucleotidase (Lpg0095) In Complex With Phosphate Ions
From Legionella Pneumophila, Northeast Structural
Genomics Consortium Target Lgr1
Length = 470
Score = 132 bits (332), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 108/426 (25%), Positives = 191/426 (44%), Gaps = 25/426 (5%)
Query: 1 MVNEFRYPEVCISFKYDPNFPIRGLYYDKQKGCLLKLDFFGSIEPDGCYFGRRKLSRKEI 60
+ F YPE FK++ + IRGL D + G +LKL +G+I Y G +++S +
Sbjct: 48 LAESFHYPEEIKKFKFNFDDAIRGLVIDSKNGNILKLSRYGAIRL--SYHGTKQISFSDQ 105
Query: 61 AEIYGTRHIGRDQARGLVGLMDF---FCFTEACLIADIVQYFVDAKLEFDASYIYEDVNR 117
+IY + ++ + F FC L+ D+ D + A I +DV
Sbjct: 106 KKIYRSIYVDLGDPNYMAIDTSFSIAFCILYGQLV-DLKDTNPDKMPSYQA--IAQDVQY 162
Query: 118 AIQHVHRRGLVHRGILSDPNRYLVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRF 177
+ VH G + I+ + +Y+++ +V++ +K GKK+F+LTNS Y + + +
Sbjct: 163 CVDKVHSDGTLKNIIIKNLKKYVIREKEVVEGLKHFIRYGKKIFILTNSEYSYSKLLLDY 222
Query: 178 MLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDTEKDTLAFTKVDAFIPNKIYY 237
L + W+ LF+ VI ANKP F+ + F + E T+ T V I +Y
Sbjct: 223 ALSPFLDKGEHWQGLFEFVITLANKPRFFYDNLRFLSVNPENGTM--TNVHGPIVPGVYQ 280
Query: 238 HGCLKSFLQITKWNGPEVIYFGDHLFSD-LRGPSKAGWRTAAIIHELESEIRIQ------ 290
G K F + G E++Y GDH++ D LR WRTA ++ EL EI Q
Sbjct: 281 GGNAKKFTEDLGVGGDEILYIGDHIYGDILRLKKDCNWRTALVVEELGEEIASQIRALPI 340
Query: 291 NDETYRFEQAKFHIIQELLGKLHATVANS-----QRTEACQLLLAELNEERQKARRMMKK 345
+ K + Q+ + ++ S Q QL ++ ++ + + +
Sbjct: 341 EKKIGEAMAIKKELEQKYVDLCTRSIDESSQQYDQEIHDLQLQISTVDLQISRLLQEQNS 400
Query: 346 MFNKSFGATFLTDTGQESAFAYHIHRYADVYTSKAENFLLYPPEAWLHVPFDIKIMPHHV 405
+N + F +ES FAY + R+A +Y K + L + P + + +++ H +
Sbjct: 401 FYNPKWERVFRA-GAEESYFAYQVDRFACIYMEKLSDLLEHSPMTYFRA--NRRLLAHDI 457
Query: 406 KVPSSL 411
+ ++L
Sbjct: 458 DIAAAL 463
>pdb|2V49|C Chain C, Structure Of The Ribosome Recycling Factor Bound To The
Thermus Thermophilus 70s Ribosome With Mrna, Asl-Phe And
Trna-Fmet (Part 4 Of 4). This File Contains The 50s
Subunit Of Molecule 2
Length = 229
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 94 DIVQYFVDAKLEFDASYIYEDVNRAIQHVHRRGLVHRGILSDPNRYLV--KNGQVLQFVK 151
+I+Q +DA ++FDA DV A+ R L RG+L +P V G++++ +K
Sbjct: 99 EIIQKILDAWMDFDAVVATPDVMGAVGSKLGRILAPRGLLPNPKAGTVGFNIGEIIREIK 158
Query: 152 MLR 154
R
Sbjct: 159 AGR 161
>pdb|3GNI|B Chain B, Structure Of Strad And Mo25
Length = 389
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 95 IVQYFVDAKLEFDASYIYEDVNRAIQHVHRRGLVHRGI 132
I +F+D E +YI + V +A+ ++H G VHR +
Sbjct: 117 ICTHFMDGMNELAIAYILQGVLKALDYIHHMGYVHRSV 154
>pdb|2WTK|B Chain B, Structure Of The Heterotrimeric Lkb1-Stradalpha-Mo25alpha
Complex
pdb|2WTK|E Chain E, Structure Of The Heterotrimeric Lkb1-Stradalpha-Mo25alpha
Complex
Length = 373
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 95 IVQYFVDAKLEFDASYIYEDVNRAIQHVHRRGLVHRGI 132
I +F+D E +YI + V +A+ ++H G VHR +
Sbjct: 101 ICTHFMDGMNELAIAYILQGVLKALDYIHHMGYVHRSV 138
>pdb|2V6Q|A Chain A, Crystal Structure Of A Bhrf-1 : Bim Bh3 Complex
pdb|2WH6|A Chain A, Crystal Structure Of Anti-Apoptotic Bhrf1 In Complex With
The Bim Bh3 Domain
pdb|2XPX|A Chain A, Crystal Structure Of Bhrf1:bak Bh3 Complex
Length = 173
Score = 32.3 bits (72), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 41/100 (41%), Gaps = 18/100 (18%)
Query: 99 FVDAKLEFDASYIYEDVNRAIQHVHRRGL---------VHRGILSDPNRYLVKNGQVLQF 149
++ +E ++ E NR I H L HRG DP+ G+ L +
Sbjct: 66 LLEEIIERNSETFTETWNRFITHTEHVDLDFNSVFLEIFHRG---DPSL-----GRALAW 117
Query: 150 VKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSW 189
+ + L ++PYY VD +R MLE S G D W
Sbjct: 118 MAWCMHACRTLCCNQSTPYYVVDLSVRGMLEASEGL-DGW 156
>pdb|1Q59|A Chain A, Solution Structure Of The Bhrf1 Protein From Epstein-Barr
Virus, A Homolog Of Human Bcl-2
Length = 172
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 41/100 (41%), Gaps = 18/100 (18%)
Query: 99 FVDAKLEFDASYIYEDVNRAIQHVHRRGL---------VHRGILSDPNRYLVKNGQVLQF 149
++ +E ++ E NR I H L HRG DP+ G+ L +
Sbjct: 53 LLEEIIERNSETFTETWNRFITHTEHVDLDFNSVFLEIFHRG---DPSL-----GRALAW 104
Query: 150 VKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSW 189
+ + L ++PYY VD +R MLE S G D W
Sbjct: 105 MAWCMHACRTLCCNQSTPYYVVDLSVRGMLEASEGL-DGW 143
>pdb|2YL8|A Chain A, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
Length = 434
Score = 31.6 bits (70), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 57/122 (46%), Gaps = 13/122 (10%)
Query: 52 RRKLSRKEIAEI-YGTRHIGRDQARGLVGLMDFFCFTEACLIA--DIVQYFVDAKLEFDA 108
KL++K+I I G ++ +Q + ++ + +T+ L+ D +++ +D + A
Sbjct: 1 NEKLAKKKIVSIDAGRKYFSPEQLKEIIDKAKHYGYTDLHLLVGNDGLRFMLD-DMSITA 59
Query: 109 ---SYIYEDVNRAIQHVHRRGLVHRGILSDPNRYLVKNGQVLQFVKMLREKGKKLFLLTN 165
+Y +DV RAI+ +G +DPN + Q+ + ++KG L N
Sbjct: 60 NGKTYASDDVKRAIE----KGT--NDYYNDPNGNHLTESQMTDLINYAKDKGIGLIPTVN 113
Query: 166 SP 167
SP
Sbjct: 114 SP 115
>pdb|2HW8|A Chain A, Structure Of Ribosomal Protein L1-Mrna Complex At 2.1
Resolution
Length = 228
Score = 31.6 bits (70), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 94 DIVQYFVDAKLEFDASYIYEDVNRAIQHVHRRGLVHRGILSDPNRYLV--KNGQVLQFVK 151
+I+Q +D ++FDA DV A+ R L RG+L +P V G++++ +K
Sbjct: 98 EIIQKILDGWMDFDAVVATPDVXGAVGSKXGRILGPRGLLPNPKAGTVGFNIGEIIREIK 157
Query: 152 MLR 154
R
Sbjct: 158 AGR 160
>pdb|2YL6|A Chain A, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
Length = 434
Score = 31.6 bits (70), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 57/122 (46%), Gaps = 13/122 (10%)
Query: 52 RRKLSRKEIAEI-YGTRHIGRDQARGLVGLMDFFCFTEACLIA--DIVQYFVDAKLEFDA 108
KL++K+I I G ++ +Q + ++ + +T+ L+ D +++ +D + A
Sbjct: 1 NEKLAKKKIVSIDAGRKYFSPEQLKEIIDKAKHYGYTDLHLLVGNDGLRFMLD-DMSITA 59
Query: 109 ---SYIYEDVNRAIQHVHRRGLVHRGILSDPNRYLVKNGQVLQFVKMLREKGKKLFLLTN 165
+Y +DV RAI+ +G +DPN + Q+ + ++KG L N
Sbjct: 60 NGKTYASDDVKRAIE----KGT--NDYYNDPNGNHLTESQMTDLINYAKDKGIGLIPTVN 113
Query: 166 SP 167
SP
Sbjct: 114 SP 115
>pdb|2YLL|A Chain A, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
Length = 454
Score = 31.6 bits (70), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 57/122 (46%), Gaps = 13/122 (10%)
Query: 52 RRKLSRKEIAEI-YGTRHIGRDQARGLVGLMDFFCFTEACLIA--DIVQYFVDAKLEFDA 108
KL++K+I I G ++ +Q + ++ + +T+ L+ D +++ +D + A
Sbjct: 21 NEKLAKKKIVSIDAGRKYFSPEQLKEIIDKAKHYGYTDLHLLVGNDGLRFMLD-DMSITA 79
Query: 109 ---SYIYEDVNRAIQHVHRRGLVHRGILSDPNRYLVKNGQVLQFVKMLREKGKKLFLLTN 165
+Y +DV RAI+ +G +DPN + Q+ + ++KG L N
Sbjct: 80 NGKTYASDDVKRAIE----KGT--NDYYNDPNGNHLTESQMTDLINYAKDKGIGLIPTVN 133
Query: 166 SP 167
SP
Sbjct: 134 SP 135
>pdb|2C30|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 6
Length = 321
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 73/167 (43%), Gaps = 19/167 (11%)
Query: 60 IAEIYGTRHIGRDQARGLVGLMDFFCFTEACLIADIVQYFVDAKL-EFDASYIYEDVNRA 118
+ E+Y + +G + L LM+F + + DIV +L E + + E V +A
Sbjct: 104 VVEMYKSYLVGEE----LWVLMEFL---QGGALTDIVS---QVRLNEEQIATVCEAVLQA 153
Query: 119 IQHVHRRGLVHRGILSDPNRYLVKNGQV----LQFVKMLREKGKKLFLLTNSPYYFVDGG 174
+ ++H +G++HR I SD + L +G+V F + + K L +PY+
Sbjct: 154 LAYLHAQGVIHRDIKSD-SILLTLDGRVKLSDFGFCAQISKDVPKRKXLVGTPYWMAPEV 212
Query: 175 MRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDTEKDT 221
+ L + D W L +VI + Y SD P + +D+
Sbjct: 213 ISRSLYATE--VDIW-SLGIMVIEMVDGEPPYFSDSPVQAMKRLRDS 256
>pdb|3FHR|A Chain A, High Resolution Crystal Structure Of Mitogen-Activated
Protein Kinase-Activated Protein Kinase 3
(Mk3)-Inhibitor Complex
pdb|3FXW|A Chain A, High Resolution Crystal Structure Of Mitogen-Activated
Protein Kinase- Activated Protein Kinase 3INHIBITOR 2
COMPLEX
Length = 336
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Query: 60 IAEIYGTRHIGRDQARGLVGLMDFFCFTEACLIADIVQYFVDAKLEFDASYIYEDVNRAI 119
I ++Y H G+ R L+ +M+ C L + I + A E +A+ I D+ AI
Sbjct: 87 ILDVYENMHHGK---RCLLIIME--CMEGGELFSRIQERGDQAFTEREAAEIMRDIGTAI 141
Query: 120 QHVHRRGLVHRGI 132
Q +H + HR +
Sbjct: 142 QFLHSHNIAHRDV 154
>pdb|3R1N|A Chain A, Mk3 Kinase Bound To Compound 5b
pdb|3SHE|A Chain A, Novel Atp-Competitive Mk2 Inhibitors With Potent
Biochemical And Cell- Based Activity Throughout The
Series
Length = 317
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Query: 60 IAEIYGTRHIGRDQARGLVGLMDFFCFTEACLIADIVQYFVDAKLEFDASYIYEDVNRAI 119
I ++Y H G+ R L+ +M+ C L + I + A E +A+ I D+ AI
Sbjct: 68 ILDVYENMHHGK---RCLLIIME--CMEGGELFSRIQERGDQAFTEREAAEIMRDIGTAI 122
Query: 120 QHVHRRGLVHRGI 132
Q +H + HR +
Sbjct: 123 QFLHSHNIAHRDV 135
>pdb|2IWI|A Chain A, Crystal Structure Of The Human Pim2 In Complex With A
Ruthenium Organometallic Ligand Ru1
pdb|2IWI|B Chain B, Crystal Structure Of The Human Pim2 In Complex With A
Ruthenium Organometallic Ligand Ru1
Length = 312
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 10/67 (14%)
Query: 76 GLVGLMDFFCFTEACLIA--------DIVQYFVDAKL--EFDASYIYEDVNRAIQHVHRR 125
G++ L+D+F E ++ D+ Y + E + + V AIQH H R
Sbjct: 99 GVIRLLDWFETQEGFMLVLERPLPAQDLFDYITEKGPLGEGPSRCFFGQVVAAIQHCHSR 158
Query: 126 GLVHRGI 132
G+VHR I
Sbjct: 159 GVVHRDI 165
>pdb|3RPM|A Chain A, Crystal Structure Of The First Gh20 Domain Of A Novel
Beta-N-Acetyl- Hexosaminidase Strh From Streptococcus
Pneumoniae R6
pdb|3RPM|B Chain B, Crystal Structure Of The First Gh20 Domain Of A Novel
Beta-N-Acetyl- Hexosaminidase Strh From Streptococcus
Pneumoniae R6
Length = 467
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 55/121 (45%), Gaps = 11/121 (9%)
Query: 52 RRKLSRKEIAEI-YGTRHIGRDQARGLVGLMDFFCFTEACLIA--DIVQYFVD--AKLEF 106
KL++K+I I G ++ +Q + ++ + +T+ L+ D +++ +D +
Sbjct: 6 NEKLAKKKIVSIDAGRKYFSPEQLKEIIDKAKHYGYTDLHLLVGNDGLRFXLDDXSITAN 65
Query: 107 DASYIYEDVNRAIQHVHRRGLVHRGILSDPNRYLVKNGQVLQFVKMLREKGKKLFLLTNS 166
+Y +DV RAI+ +G +DPN + Q + ++KG L NS
Sbjct: 66 GKTYASDDVKRAIE----KGT--NDYYNDPNGNHLTESQXTDLINYAKDKGIGLIPTVNS 119
Query: 167 P 167
P
Sbjct: 120 P 120
>pdb|2JAM|A Chain A, Crystal Structure Of Human Calmodulin-Dependent Protein
Kinase I G
pdb|2JAM|B Chain B, Crystal Structure Of Human Calmodulin-Dependent Protein
Kinase I G
Length = 304
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 105 EFDASYIYEDVNRAIQHVHRRGLVHRGILSDPNRYLV--KNGQVL 147
E DAS + + V A++++H G+VHR + + YL +N +++
Sbjct: 105 EKDASLVIQQVLSAVKYLHENGIVHRDLKPENLLYLTPEENSKIM 149
>pdb|2QG5|A Chain A, Cryptosporidium Parvum Calcium Dependent Protein Kinase
Cgd7_1840
pdb|2QG5|B Chain B, Cryptosporidium Parvum Calcium Dependent Protein Kinase
Cgd7_1840
pdb|2QG5|D Chain D, Cryptosporidium Parvum Calcium Dependent Protein Kinase
Cgd7_1840
Length = 294
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 44/95 (46%), Gaps = 7/95 (7%)
Query: 82 DFFCFTEACLIADIVQYFVDAKL--EFDASYIYEDVNRAIQHVHRRGLVHRGILSDPNRY 139
D + E C ++ + V ++ E DA+ I +DV A+ + H+ + HR + + +
Sbjct: 97 DIYLVMELCTGGELFERVVHKRVFRESDAARIMKDVLSAVAYCHKLNVAHRDLKPENFLF 156
Query: 140 LVKNG----QVLQFVKMLREK-GKKLFLLTNSPYY 169
L + +++ F R K GK + +PYY
Sbjct: 157 LTDSPDSPLKLIDFGLAARFKPGKMMRTKVGTPYY 191
>pdb|3F3Z|A Chain A, Crystal Structure Of Cryptosporidium Parvum Calcium
Dependent Protein Kinase Cgd7_1840 In Presence Of
Indirubin E804
Length = 277
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 44/95 (46%), Gaps = 7/95 (7%)
Query: 82 DFFCFTEACLIADIVQYFVDAKL--EFDASYIYEDVNRAIQHVHRRGLVHRGILSDPNRY 139
D + E C ++ + V ++ E DA+ I +DV A+ + H+ + HR + + +
Sbjct: 80 DIYLVMELCTGGELFERVVHKRVFRESDAARIMKDVLSAVAYCHKLNVAHRDLKPENFLF 139
Query: 140 LVKNG----QVLQFVKMLREK-GKKLFLLTNSPYY 169
L + +++ F R K GK + +PYY
Sbjct: 140 LTDSPDSPLKLIDFGLAARFKPGKMMRTKVGTPYY 174
>pdb|2F57|A Chain A, Crystal Structure Of The Human P21-activated Kinase 5
pdb|2F57|B Chain B, Crystal Structure Of The Human P21-activated Kinase 5
Length = 317
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 7/89 (7%)
Query: 86 FTEACLIADIVQYFVDAKLEFDASYIYEDVNRAIQHVHRRGLVHRGILSDPNRYLVKNGQ 145
F E + DIV + E + + V RA+ ++H +G++HR I SD + L +G+
Sbjct: 123 FLEGGALTDIVTH--TRMNEEQIATVCLSVLRALSYLHNQGVIHRDIKSD-SILLTSDGR 179
Query: 146 V----LQFVKMLREKGKKLFLLTNSPYYF 170
+ F + ++ K L +PY+
Sbjct: 180 IKLSDFGFCAQVSKEVPKRKXLVGTPYWM 208
>pdb|3SOA|A Chain A, Full-Length Human Camkii
Length = 444
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 6/52 (11%)
Query: 83 FFCFTEACLIADIV--QYFVDAKLEFDASYIYEDVNRAIQHVHRRGLVHRGI 132
F T L DIV +Y+ +A DAS+ + + A+ H H+ G+VHR +
Sbjct: 89 FDLVTGGELFEDIVAREYYSEA----DASHCIQQILEAVLHCHQMGVVHRNL 136
>pdb|3KN5|A Chain A, Crystal Structure Of The C-Terminal Kinase Domain Of Msk1
In With Amp-Pnp
pdb|3KN5|B Chain B, Crystal Structure Of The C-Terminal Kinase Domain Of Msk1
In With Amp-Pnp
pdb|3KN6|A Chain A, Crystal Structure Of The C-Terminal Kinase Domain Of Msk1
pdb|3KN6|B Chain B, Crystal Structure Of The C-Terminal Kinase Domain Of Msk1
Length = 325
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 105 EFDASYIYEDVNRAIQHVHRRGLVHRGI 132
E +ASYI + A+ H+H G+VHR +
Sbjct: 105 ETEASYIMRKLVSAVSHMHDVGVVHRDL 132
>pdb|2AC3|A Chain A, Structure Of Human Mnk2 Kinase Domain
Length = 316
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 105 EFDASYIYEDVNRAIQHVHRRGLVHRGILSDPNRYLVKNGQVLQFVKM 152
E +AS + +DV A+ +H +G+ HR + P L ++ + VK+
Sbjct: 110 ELEASVVVQDVASALDFLHNKGIAHRDL--KPENILCEHPNQVSPVKI 155
>pdb|2AC5|A Chain A, Structure Of Human Mnk2 Kinase Domain Mutant D228g
pdb|2HW7|A Chain A, Crystal Structure Of Mnk2-D228g In Complex With
Staurosporine
Length = 316
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 105 EFDASYIYEDVNRAIQHVHRRGLVHRGILSDPNRYLVKNGQVLQFVKM 152
E +AS + +DV A+ +H +G+ HR + P L ++ + VK+
Sbjct: 110 ELEASVVVQDVASALDFLHNKGIAHRDL--KPENILCEHPNQVSPVKI 155
>pdb|2VZ6|A Chain A, Structure Of Human Calcium Calmodulin Dependent Protein
Kinase Type Ii Alpha (Camk2a) In Complex With Indirubin
E804
pdb|2VZ6|B Chain B, Structure Of Human Calcium Calmodulin Dependent Protein
Kinase Type Ii Alpha (Camk2a) In Complex With Indirubin
E804
Length = 313
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 6/52 (11%)
Query: 83 FFCFTEACLIADIV--QYFVDAKLEFDASYIYEDVNRAIQHVHRRGLVHRGI 132
F T L DIV +Y+ +A DAS+ + + A+ H H+ G+VHR +
Sbjct: 100 FDLVTGGELFEDIVAREYYSEA----DASHCIQQILEAVLHCHQMGVVHRDL 147
>pdb|3UOQ|W Chain W, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome (Without
Viomycin)
Length = 534
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/88 (21%), Positives = 38/88 (43%), Gaps = 28/88 (31%)
Query: 242 KSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIHELESEIRIQ----------- 290
+ +++T+ ++ F + L D+R P + ++ E+E+E++I
Sbjct: 124 RKLMEVTRLRDTPILTFMNKLDRDIRDPME-------LLDEVENELKIGCAPITWPIGCG 176
Query: 291 ----------NDETYRFEQAKFHIIQEL 308
DETY ++ K H IQE+
Sbjct: 177 KLFKGVYHLYKDETYLYQSGKGHTIQEV 204
>pdb|2H5E|A Chain A, Crystal Structure Of E.Coli Polypeptide Release Factor Rf3
pdb|2H5E|B Chain B, Crystal Structure Of E.Coli Polypeptide Release Factor Rf3
pdb|2O0F|A Chain A, Docking Of The Modified Rf3 X-Ray Structure Into Cryo-Em
Map Of E.Coli 70s Ribosome Bound With Rf3
pdb|3ZVO|Y Chain Y, Crystal Structure Of The Hybrid State Of Ribosome In
Complex With The Guanosine Triphosphatase Release Factor
3
pdb|3SFS|W Chain W, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome
Length = 529
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/88 (21%), Positives = 38/88 (43%), Gaps = 28/88 (31%)
Query: 242 KSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIHELESEIRIQ----------- 290
+ +++T+ ++ F + L D+R P + ++ E+E+E++I
Sbjct: 124 RKLMEVTRLRDTPILTFMNKLDRDIRDPME-------LLDEVENELKIGCAPITWPIGCG 176
Query: 291 ----------NDETYRFEQAKFHIIQEL 308
DETY ++ K H IQE+
Sbjct: 177 KLFKGVYHLYKDETYLYQSGKGHTIQEV 204
>pdb|2Z61|A Chain A, Crystal Structure Of Mj0684 From Methanococcus Jannaschii
Reveals Its Similarity In The Active Site To Kynurenine
Aminotransferases
Length = 370
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
Query: 146 VLQFVKMLREKGKKLFLLT------NSPYYFVDGGMRFMLEDSTGYTDS 188
+L + L +GKK+ L N+P VD G++ + E T YTDS
Sbjct: 17 ILALAQKLESEGKKVIHLEIGEPDFNTPKPIVDEGIKSLKEGKTHYTDS 65
>pdb|3BHH|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase Iib Isoform 1 (camk2b)
pdb|3BHH|B Chain B, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase Iib Isoform 1 (camk2b)
pdb|3BHH|C Chain C, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase Iib Isoform 1 (camk2b)
pdb|3BHH|D Chain D, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase Iib Isoform 1 (camk2b)
Length = 295
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 6/44 (13%)
Query: 91 LIADIV--QYFVDAKLEFDASYIYEDVNRAIQHVHRRGLVHRGI 132
L DIV +Y+ +A DAS+ + + A+ H H+ G+VHR +
Sbjct: 90 LFEDIVAREYYSEA----DASHCIQQILEAVLHCHQMGVVHRDL 129
>pdb|2WEL|A Chain A, Crystal Structure Of Su6656-Bound CalciumCALMODULIN-
Dependent Protein Kinase Ii Delta In Complex With
Calmodulin
Length = 327
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 6/52 (11%)
Query: 83 FFCFTEACLIADIV--QYFVDAKLEFDASYIYEDVNRAIQHVHRRGLVHRGI 132
F T L DIV +Y+ +A DAS+ + + ++ H H G+VHR +
Sbjct: 82 FDLVTGGELFEDIVAREYYSEA----DASHCIQQILESVNHCHLNGIVHRDL 129
>pdb|4APC|A Chain A, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
pdb|4APC|B Chain B, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
pdb|4B9D|A Chain A, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
With Inhibitor.
pdb|4B9D|B Chain B, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
With Inhibitor
Length = 350
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 118 AIQHVHRRGLVHRGILSDPNRYLVKNGQV 146
A++HVH R ++HR I S N +L K+G V
Sbjct: 137 ALKHVHDRKILHRDIKSQ-NIFLTKDGTV 164
>pdb|3UIU|A Chain A, Crystal Structure Of Apo-Pkr Kinase Domain
pdb|3UIU|B Chain B, Crystal Structure Of Apo-Pkr Kinase Domain
Length = 306
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 14/89 (15%)
Query: 108 ASYIYEDVNRAIQHVHRRGLVHRGILSDPNRYLVKNGQV----LQFVKMLREKGKKLFLL 163
A ++E + + + ++H + L+HR L N +LV QV V L+ GK+
Sbjct: 138 ALELFEQITKGVDYIHSKKLIHRD-LKPSNIFLVDTKQVKIGDFGLVTSLKNDGKR---- 192
Query: 164 TNSPYYFVDGGMRFMLEDSTGYTDSWREL 192
T S G +R+M + D +E+
Sbjct: 193 TRSK-----GTLRYMSPEQISSQDYGKEV 216
>pdb|2VN9|A Chain A, Crystal Structure Of Human Calcium Calmodulin Dependent
Protein Kinase Ii Delta Isoform 1, Camkd
pdb|2VN9|B Chain B, Crystal Structure Of Human Calcium Calmodulin Dependent
Protein Kinase Ii Delta Isoform 1, Camkd
Length = 301
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 6/52 (11%)
Query: 83 FFCFTEACLIADIV--QYFVDAKLEFDASYIYEDVNRAIQHVHRRGLVHRGI 132
F T L DIV +Y+ +A DAS+ + + ++ H H G+VHR +
Sbjct: 82 FDLVTGGELFEDIVAREYYSEA----DASHCIQQILESVNHCHLNGIVHRDL 129
>pdb|3DGR|A Chain A, Crystal Structure Of Human Nampt Complexed With Adp
Analogue
pdb|3DGR|B Chain B, Crystal Structure Of Human Nampt Complexed With Adp
Analogue
pdb|3DHD|A Chain A, Crystal Structure Of Human Nampt Complexed With
Nicotinamide Mononucleotide And Pyrophosphate
pdb|3DHD|B Chain B, Crystal Structure Of Human Nampt Complexed With
Nicotinamide Mononucleotide And Pyrophosphate
pdb|3DHF|A Chain A, Crystal Structure Of Phosphorylated Mimic Form Of Human
Nampt Complexed With Nicotinamide Mononucleotide And
Pyrophosphate
pdb|3DHF|B Chain B, Crystal Structure Of Phosphorylated Mimic Form Of Human
Nampt Complexed With Nicotinamide Mononucleotide And
Pyrophosphate
pdb|3DKJ|A Chain A, Crystal Structure Of Human Nampt Complexed With Benzamide
And Phosphoribosyl Pyrophosphate
pdb|3DKJ|B Chain B, Crystal Structure Of Human Nampt Complexed With Benzamide
And Phosphoribosyl Pyrophosphate
pdb|3DKL|A Chain A, Crystal Structure Of Phosphorylated Mimic Form Of Human
Nampt Complexed With Benzamide And Phosphoribosyl
Pyrophosphate
pdb|3DKL|B Chain B, Crystal Structure Of Phosphorylated Mimic Form Of Human
Nampt Complexed With Benzamide And Phosphoribosyl
Pyrophosphate
Length = 484
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 361 QESAFAYHIHRYADVYTSKAENFLLYPPEAWLHVPFDIKIMPHHVKVP 408
QE+ Y H DV+ K N++L + H+P +IK +P +P
Sbjct: 81 QEAKDVYKEHFQDDVFNEKGWNYILEKYDG--HLPIEIKAVPEGFVIP 126
>pdb|2GVJ|A Chain A, Crystal Structure Of Human Nmprtase In Complex With Fk866
pdb|2GVJ|B Chain B, Crystal Structure Of Human Nmprtase In Complex With Fk866
Length = 491
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 343 MKKMFNKSFGATFLT-DTGQESAFAYHIHRYADVYTSKAENFLLYPPEAWLHVPFDIKIM 401
++ + NK +T + QE+ Y H DV+ K N++L + H+P +IK +
Sbjct: 62 LQYILNKYLKGKVVTKEKIQEAKDVYKEHFQDDVFNEKGWNYILEKYDG--HLPIEIKAV 119
Query: 402 PHHVKVP 408
P +P
Sbjct: 120 PEGFVIP 126
>pdb|2WNT|A Chain A, Crystal Structure Of The Human Ribosomal Protein S6 Kinase
pdb|2WNT|B Chain B, Crystal Structure Of The Human Ribosomal Protein S6 Kinase
Length = 330
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 10/40 (25%), Positives = 25/40 (62%)
Query: 105 EFDASYIYEDVNRAIQHVHRRGLVHRGILSDPNRYLVKNG 144
E +AS++ + + ++++H +G+VHR + Y+ ++G
Sbjct: 120 EREASFVLHTIGKTVEYLHSQGVVHRDLKPSNILYVDESG 159
>pdb|2GVG|A Chain A, Crystal Structure Of Human Nmprtase And Its Complex With
Nmn
pdb|2GVG|B Chain B, Crystal Structure Of Human Nmprtase And Its Complex With
Nmn
pdb|2GVG|C Chain C, Crystal Structure Of Human Nmprtase And Its Complex With
Nmn
pdb|2GVG|D Chain D, Crystal Structure Of Human Nmprtase And Its Complex With
Nmn
pdb|2GVG|E Chain E, Crystal Structure Of Human Nmprtase And Its Complex With
Nmn
pdb|2GVG|F Chain F, Crystal Structure Of Human Nmprtase And Its Complex With
Nmn
Length = 491
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 343 MKKMFNKSFGATFLT-DTGQESAFAYHIHRYADVYTSKAENFLLYPPEAWLHVPFDIKIM 401
++ + NK +T + QE+ Y H DV+ K N++L + H+P +IK +
Sbjct: 62 LQYILNKYLKGKVVTKEKIQEAKDVYKEHFQDDVFNEKGWNYILEKYDG--HLPIEIKAV 119
Query: 402 PHHVKVP 408
P +P
Sbjct: 120 PEGFVIP 126
>pdb|2E5B|A Chain A, Crystal Structure Of Human Nmprtase As Free-Form
pdb|2E5B|B Chain B, Crystal Structure Of Human Nmprtase As Free-Form
pdb|2E5C|A Chain A, Crystal Structure Of Human Nmprtase Complexed With
5'-Phosphoribosyl- 1'-Pyrophosphate
pdb|2E5C|B Chain B, Crystal Structure Of Human Nmprtase Complexed With
5'-Phosphoribosyl- 1'-Pyrophosphate
pdb|2E5D|A Chain A, Crystal Structure Of Human Nmprtase Complexed With
Nicotinamide
pdb|2E5D|B Chain B, Crystal Structure Of Human Nmprtase Complexed With
Nicotinamide
Length = 499
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 343 MKKMFNKSFGATFLT-DTGQESAFAYHIHRYADVYTSKAENFLLYPPEAWLHVPFDIKIM 401
++ + NK +T + QE+ Y H DV+ K N++L + H+P +IK +
Sbjct: 70 LQYILNKYLKGKVVTKEKIQEAKDVYKEHFQDDVFNEKGWNYILEKYDG--HLPIEIKAV 127
Query: 402 PHHVKVP 408
P +P
Sbjct: 128 PEGFVIP 134
>pdb|3RNY|A Chain A, Crystal Structure Of Human Rsk1 C-Terminal Kinase Domain
pdb|3RNY|B Chain B, Crystal Structure Of Human Rsk1 C-Terminal Kinase Domain
Length = 346
Score = 28.1 bits (61), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 10/40 (25%), Positives = 25/40 (62%)
Query: 105 EFDASYIYEDVNRAIQHVHRRGLVHRGILSDPNRYLVKNG 144
E +AS++ + + ++++H +G+VHR + Y+ ++G
Sbjct: 120 EREASFVLHTIGKTVEYLHSQGVVHRDLKPSNILYVDESG 159
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.141 0.437
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,190,122
Number of Sequences: 62578
Number of extensions: 561657
Number of successful extensions: 2024
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 1969
Number of HSP's gapped (non-prelim): 48
length of query: 415
length of database: 14,973,337
effective HSP length: 101
effective length of query: 314
effective length of database: 8,652,959
effective search space: 2717029126
effective search space used: 2717029126
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.0 bits)