Query 014930
Match_columns 415
No_of_seqs 197 out of 528
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 01:27:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014930.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014930hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05761 5_nucleotid: 5' nucle 100.0 3E-125 6E-130 974.0 21.7 402 1-409 43-448 (448)
2 KOG2470 Similar to IMP-GMP spe 100.0 3E-114 6E-119 842.7 21.7 392 1-408 95-495 (510)
3 TIGR02244 HAD-IG-Ncltidse HAD 100.0 2.2E-87 4.8E-92 671.1 25.5 290 1-293 43-336 (343)
4 KOG2469 IMP-GMP specific 5'-nu 100.0 3E-79 6.4E-84 609.3 20.0 362 1-378 57-424 (424)
5 COG2179 Predicted hydrolase of 99.6 5.9E-15 1.3E-19 133.3 9.6 103 143-294 48-150 (175)
6 TIGR02253 CTE7 HAD superfamily 99.4 9.6E-13 2.1E-17 123.2 7.9 103 138-282 91-197 (221)
7 PF13419 HAD_2: Haloacid dehal 99.3 3.4E-12 7.5E-17 112.8 7.6 101 136-279 72-176 (176)
8 PRK13226 phosphoglycolate phos 99.3 9.5E-12 2.1E-16 118.4 8.6 101 139-282 93-197 (229)
9 TIGR01428 HAD_type_II 2-haloal 99.3 7.7E-12 1.7E-16 115.6 7.7 99 141-282 92-194 (198)
10 PLN02770 haloacid dehalogenase 99.3 1.1E-11 2.3E-16 119.6 8.6 100 139-281 106-209 (248)
11 TIGR01509 HAD-SF-IA-v3 haloaci 99.3 2.3E-11 5E-16 109.8 10.0 96 140-279 84-183 (183)
12 PLN03243 haloacid dehalogenase 99.2 1.4E-11 3.1E-16 120.2 8.3 99 140-281 108-210 (260)
13 TIGR01449 PGP_bact 2-phosphogl 99.2 2.3E-11 5E-16 113.1 8.9 102 137-281 81-186 (213)
14 TIGR01454 AHBA_synth_RP 3-amin 99.2 2.1E-11 4.5E-16 113.5 8.0 102 139-283 73-178 (205)
15 TIGR01422 phosphonatase phosph 99.2 2.7E-11 5.9E-16 116.5 8.3 100 140-282 98-203 (253)
16 TIGR01662 HAD-SF-IIIA HAD-supe 99.2 3.3E-11 7.1E-16 104.6 7.6 101 137-281 21-132 (132)
17 COG0546 Gph Predicted phosphat 99.2 1.4E-10 3E-15 110.0 12.4 102 139-283 87-192 (220)
18 PRK13288 pyrophosphatase PpaX; 99.2 4.1E-11 9E-16 112.2 8.7 100 140-282 81-184 (214)
19 PRK14988 GMP/IMP nucleotidase; 99.2 2.6E-11 5.6E-16 115.4 7.3 99 140-281 92-194 (224)
20 PRK09456 ?-D-glucose-1-phospha 99.2 2.8E-11 6.1E-16 112.5 6.6 99 141-281 84-186 (199)
21 PRK09449 dUMP phosphatase; Pro 99.2 4.6E-11 9.9E-16 112.4 7.7 99 140-281 94-197 (224)
22 TIGR02252 DREG-2 REG-2-like, H 99.1 5.1E-11 1.1E-15 110.4 6.4 95 141-278 105-203 (203)
23 TIGR03351 PhnX-like phosphonat 99.1 8.1E-11 1.8E-15 110.4 7.7 100 141-283 87-194 (220)
24 PRK10826 2-deoxyglucose-6-phos 99.1 1E-10 2.2E-15 110.3 7.9 100 140-282 91-194 (222)
25 TIGR02247 HAD-1A3-hyp Epoxide 99.1 8.6E-11 1.9E-15 109.7 7.0 101 140-281 93-197 (211)
26 TIGR01990 bPGM beta-phosphoglu 99.1 8E-11 1.7E-15 106.9 6.5 94 141-279 87-184 (185)
27 COG1011 Predicted hydrolase (H 99.1 1.6E-10 3.5E-15 108.3 8.5 103 139-284 97-203 (229)
28 PLN02575 haloacid dehalogenase 99.1 2.1E-10 4.6E-15 117.5 8.6 99 141-282 216-318 (381)
29 PRK13478 phosphonoacetaldehyde 99.1 2.8E-10 6E-15 110.7 9.0 100 140-282 100-205 (267)
30 TIGR02009 PGMB-YQAB-SF beta-ph 99.1 1.3E-10 2.8E-15 105.6 6.2 96 139-279 86-185 (185)
31 TIGR02254 YjjG/YfnB HAD superf 99.1 2.7E-10 5.8E-15 106.5 7.7 101 140-283 96-201 (224)
32 TIGR01993 Pyr-5-nucltdase pyri 99.1 1.8E-10 3.8E-15 105.4 6.3 95 139-279 82-184 (184)
33 TIGR01261 hisB_Nterm histidino 99.1 2.7E-10 5.8E-15 103.7 7.2 103 139-286 27-154 (161)
34 TIGR01668 YqeG_hyp_ppase HAD s 99.1 2.5E-10 5.4E-15 104.3 7.0 98 141-285 43-141 (170)
35 PRK11587 putative phosphatase; 99.1 3.6E-10 7.7E-15 106.5 8.2 99 140-282 82-184 (218)
36 TIGR01691 enolase-ppase 2,3-di 99.0 6E-10 1.3E-14 106.4 9.1 102 140-283 94-199 (220)
37 PRK13225 phosphoglycolate phos 99.0 4.9E-10 1.1E-14 110.2 8.5 104 139-284 140-243 (273)
38 PLN02779 haloacid dehalogenase 99.0 4.9E-10 1.1E-14 110.7 8.0 103 140-282 143-248 (286)
39 PRK13223 phosphoglycolate phos 99.0 7.4E-10 1.6E-14 108.5 9.1 99 140-281 100-202 (272)
40 PLN02940 riboflavin kinase 99.0 4.2E-10 9.1E-15 115.6 7.2 100 140-282 92-196 (382)
41 PLN02811 hydrolase 99.0 6.3E-10 1.4E-14 105.1 7.8 98 142-282 79-186 (220)
42 PRK10725 fructose-1-P/6-phosph 99.0 1.2E-09 2.5E-14 99.8 9.1 95 141-280 88-186 (188)
43 PRK13222 phosphoglycolate phos 99.0 1.1E-09 2.3E-14 102.7 9.1 100 140-282 92-195 (226)
44 PRK06769 hypothetical protein; 99.0 4.3E-10 9.2E-15 103.1 5.8 100 141-283 28-140 (173)
45 PRK10748 flavin mononucleotide 99.0 6.1E-10 1.3E-14 106.7 6.2 95 140-282 112-210 (238)
46 TIGR01656 Histidinol-ppas hist 99.0 6.2E-10 1.3E-14 99.1 5.4 99 141-280 27-145 (147)
47 TIGR00213 GmhB_yaeD D,D-heptos 99.0 1.6E-09 3.5E-14 99.2 8.2 101 141-282 26-153 (176)
48 PRK08942 D,D-heptose 1,7-bisph 98.9 2.3E-09 5E-14 98.3 7.7 101 141-282 29-149 (181)
49 TIGR01685 MDP-1 magnesium-depe 98.9 9.9E-10 2.2E-14 101.3 5.2 112 141-282 45-159 (174)
50 PRK10563 6-phosphogluconate ph 98.9 1.8E-09 3.8E-14 101.5 5.9 96 139-280 86-186 (221)
51 KOG3085 Predicted hydrolase (H 98.9 2.5E-09 5.5E-14 102.9 5.9 101 136-280 109-213 (237)
52 PF09419 PGP_phosphatase: Mito 98.8 1.2E-08 2.5E-13 93.7 8.9 91 143-281 61-165 (168)
53 TIGR01664 DNA-3'-Pase DNA 3'-p 98.8 6.7E-09 1.4E-13 94.9 6.5 99 135-277 36-159 (166)
54 TIGR01549 HAD-SF-IA-v1 haloaci 98.8 1.2E-08 2.6E-13 90.3 6.4 86 143-273 66-154 (154)
55 TIGR01548 HAD-SF-IA-hyp1 haloa 98.7 2E-08 4.4E-13 93.0 6.8 85 144-271 109-196 (197)
56 PRK06698 bifunctional 5'-methy 98.7 3E-08 6.5E-13 104.1 8.1 97 142-283 331-430 (459)
57 PRK05446 imidazole glycerol-ph 98.7 4.1E-08 9E-13 99.9 8.4 97 140-281 29-149 (354)
58 cd01427 HAD_like Haloacid deha 98.7 3.4E-08 7.4E-13 83.0 6.4 117 140-279 23-139 (139)
59 TIGR01672 AphA HAD superfamily 98.7 6.9E-08 1.5E-12 93.3 9.3 105 129-283 102-214 (237)
60 PLN02919 haloacid dehalogenase 98.7 4.4E-08 9.5E-13 112.4 8.5 99 142-283 162-265 (1057)
61 PRK11009 aphA acid phosphatase 98.7 1.1E-07 2.4E-12 91.9 9.7 108 128-283 101-214 (237)
62 TIGR01681 HAD-SF-IIIC HAD-supe 98.6 5.4E-08 1.2E-12 85.0 5.0 87 143-267 31-122 (128)
63 PHA02530 pseT polynucleotide k 98.6 7.2E-08 1.6E-12 95.0 5.8 104 143-281 189-297 (300)
64 COG0637 Predicted phosphatase/ 98.5 5.5E-07 1.2E-11 85.8 11.1 99 140-281 85-187 (221)
65 smart00577 CPDc catalytic doma 98.5 1.8E-07 3.8E-12 83.6 6.8 91 138-274 42-136 (148)
66 KOG3109 Haloacid dehalogenase- 98.5 2E-07 4.3E-12 88.1 6.2 113 135-283 94-208 (244)
67 TIGR01458 HAD-SF-IIA-hyp3 HAD- 98.5 3.5E-08 7.6E-13 96.1 1.2 104 144-283 123-227 (257)
68 PHA02597 30.2 hypothetical pro 98.4 3.7E-07 7.9E-12 84.4 6.6 102 140-283 73-177 (197)
69 TIGR01491 HAD-SF-IB-PSPlk HAD- 98.4 5.1E-07 1.1E-11 82.9 7.2 107 141-278 80-188 (201)
70 TIGR01452 PGP_euk phosphoglyco 98.4 1.5E-07 3.2E-12 92.5 2.6 103 144-283 146-250 (279)
71 TIGR00338 serB phosphoserine p 98.3 8.5E-07 1.8E-11 83.1 6.7 112 140-281 84-195 (219)
72 COG0647 NagD Predicted sugar p 98.3 2.7E-06 5.7E-11 83.7 10.1 44 241-284 196-239 (269)
73 TIGR01489 DKMTPPase-SF 2,3-dik 98.3 2.1E-06 4.6E-11 77.8 7.9 110 140-273 71-182 (188)
74 TIGR01459 HAD-SF-IIA-hyp4 HAD- 98.3 4.4E-07 9.5E-12 87.2 3.1 100 144-280 141-241 (242)
75 TIGR01493 HAD-SF-IA-v2 Haloaci 98.3 3E-07 6.5E-12 83.0 1.8 82 140-271 89-174 (175)
76 TIGR02726 phenyl_P_delta pheny 98.3 7.7E-07 1.7E-11 81.8 4.4 108 120-278 15-123 (169)
77 TIGR01686 FkbH FkbH-like domai 98.2 2E-06 4.2E-11 86.4 6.3 89 143-271 33-121 (320)
78 PRK09552 mtnX 2-hydroxy-3-keto 98.2 4E-06 8.8E-11 79.2 7.8 103 140-274 73-181 (219)
79 TIGR01663 PNK-3'Pase polynucle 98.2 2.6E-06 5.7E-11 90.9 6.9 93 133-270 189-301 (526)
80 PF00702 Hydrolase: haloacid d 98.2 2.9E-06 6.2E-11 78.2 5.9 85 143-273 129-215 (215)
81 TIGR01670 YrbI-phosphatas 3-de 98.1 2.3E-06 5E-11 77.0 4.7 85 149-282 36-120 (154)
82 PRK09484 3-deoxy-D-manno-octul 98.1 2E-06 4.4E-11 79.5 4.3 83 148-279 55-137 (183)
83 PTZ00445 p36-lilke protein; Pr 98.1 1.2E-05 2.7E-10 76.1 7.7 143 114-281 49-206 (219)
84 PLN02954 phosphoserine phospha 98.0 1.2E-05 2.6E-10 75.5 7.7 113 142-281 85-197 (224)
85 TIGR03333 salvage_mtnX 2-hydro 98.0 2.5E-05 5.4E-10 73.6 8.5 121 118-274 49-177 (214)
86 PRK13582 thrH phosphoserine ph 98.0 2.7E-05 5.8E-10 72.1 8.1 99 140-274 67-165 (205)
87 PLN02645 phosphoglycolate phos 97.9 2.5E-06 5.3E-11 85.4 0.9 43 241-283 236-278 (311)
88 PF13242 Hydrolase_like: HAD-h 97.9 5.4E-06 1.2E-10 65.5 2.0 47 239-285 8-54 (75)
89 PRK10444 UMP phosphatase; Prov 97.9 5.1E-05 1.1E-09 73.8 9.1 44 241-284 180-223 (248)
90 TIGR01490 HAD-SF-IB-hyp1 HAD-s 97.9 4.6E-05 1E-09 70.3 8.4 106 143-281 89-198 (202)
91 PRK08238 hypothetical protein; 97.7 8.5E-05 1.8E-09 78.8 8.6 95 143-283 74-168 (479)
92 TIGR02251 HIF-SF_euk Dullard-l 97.7 0.00012 2.6E-09 66.6 7.1 102 135-278 36-137 (162)
93 TIGR01457 HAD-SF-IIA-hyp2 HAD- 97.6 2.8E-05 6.1E-10 75.3 2.8 43 241-283 184-226 (249)
94 TIGR01488 HAD-SF-IB Haloacid D 97.6 0.0001 2.2E-09 66.3 6.2 104 140-270 72-175 (177)
95 COG0241 HisB Histidinol phosph 97.6 0.00015 3.2E-09 67.4 6.7 101 143-285 33-154 (181)
96 TIGR01459 HAD-SF-IIA-hyp4 HAD- 97.5 0.00017 3.7E-09 69.2 5.6 82 142-267 25-109 (242)
97 KOG2914 Predicted haloacid-hal 97.5 0.00073 1.6E-08 64.9 9.7 96 144-281 95-197 (222)
98 TIGR01525 ATPase-IB_hvy heavy 97.4 0.00012 2.5E-09 79.0 4.6 87 143-282 386-473 (556)
99 PRK11133 serB phosphoserine ph 97.4 0.00016 3.5E-09 73.0 5.2 108 140-277 180-288 (322)
100 TIGR02137 HSK-PSP phosphoserin 97.3 0.00067 1.5E-08 64.0 7.2 109 140-286 67-177 (203)
101 TIGR01460 HAD-SF-IIA Haloacid 97.2 0.00013 2.8E-09 70.1 1.5 41 241-281 194-235 (236)
102 TIGR01512 ATPase-IB2_Cd heavy 97.2 0.00031 6.7E-09 75.5 4.4 81 144-274 365-446 (536)
103 PF06888 Put_Phosphatase: Puta 97.2 0.0023 5E-08 61.9 9.9 115 140-279 70-196 (234)
104 TIGR01544 HAD-SF-IE haloacid d 97.0 0.0045 9.8E-08 61.3 9.7 114 140-281 120-240 (277)
105 TIGR01684 viral_ppase viral ph 96.9 0.0024 5.1E-08 63.7 7.0 64 124-201 133-197 (301)
106 TIGR01511 ATPase-IB1_Cu copper 96.8 0.0019 4.2E-08 69.9 6.5 81 143-274 407-487 (562)
107 TIGR02250 FCP1_euk FCP1-like p 96.8 0.0046 1E-07 56.1 7.9 85 135-262 52-137 (156)
108 KOG3040 Predicted sugar phosph 96.8 0.0034 7.4E-08 59.5 6.6 137 142-280 24-226 (262)
109 KOG2961 Predicted hydrolase (H 96.7 0.0065 1.4E-07 55.0 7.7 37 250-286 137-173 (190)
110 PHA03398 viral phosphatase sup 96.7 0.0034 7.3E-08 62.7 6.2 65 124-202 135-200 (303)
111 KOG2882 p-Nitrophenyl phosphat 96.6 0.0014 3E-08 65.1 3.2 108 144-290 168-279 (306)
112 TIGR01456 CECR5 HAD-superfamil 96.3 0.0035 7.6E-08 63.1 3.6 31 252-282 263-293 (321)
113 PF12710 HAD: haloacid dehalog 96.2 0.01 2.2E-07 53.8 5.7 35 144-178 92-126 (192)
114 TIGR01533 lipo_e_P4 5'-nucleot 96.1 0.015 3.4E-07 57.3 7.3 37 142-178 119-155 (266)
115 PF08645 PNK3P: Polynucleotide 96.1 0.011 2.4E-07 53.7 5.9 34 133-166 21-54 (159)
116 COG0560 SerB Phosphoserine pho 95.9 0.017 3.6E-07 55.0 6.4 97 139-267 75-174 (212)
117 PRK11590 hypothetical protein; 95.8 0.027 5.8E-07 53.0 7.2 94 141-266 95-189 (211)
118 COG4359 Uncharacterized conser 95.7 0.088 1.9E-06 49.3 9.7 86 79-179 22-111 (220)
119 PRK10671 copA copper exporting 95.4 0.034 7.4E-07 63.0 7.5 81 144-274 653-733 (834)
120 COG4229 Predicted enolase-phos 95.4 0.03 6.6E-07 52.2 5.7 112 124-283 96-207 (229)
121 PRK10530 pyridoxal phosphate ( 95.4 0.016 3.4E-07 55.8 3.9 33 241-274 204-236 (272)
122 TIGR01545 YfhB_g-proteo haloac 95.3 0.061 1.3E-06 50.9 7.7 37 142-178 95-132 (210)
123 PLN02645 phosphoglycolate phos 94.8 0.05 1.1E-06 54.5 5.7 36 143-178 46-81 (311)
124 PRK11033 zntA zinc/cadmium/mer 94.6 0.034 7.3E-07 62.3 4.3 35 144-178 571-605 (741)
125 PF12689 Acid_PPase: Acid Phos 94.1 0.13 2.9E-06 47.4 6.4 104 143-284 47-155 (169)
126 TIGR01522 ATPase-IIA2_Ca golgi 94.0 0.099 2.1E-06 59.7 6.6 103 144-273 531-637 (884)
127 PF13344 Hydrolase_6: Haloacid 93.0 0.15 3.2E-06 42.7 4.5 37 142-178 15-51 (101)
128 KOG3120 Predicted haloacid deh 92.3 0.9 1.9E-05 43.8 9.1 116 140-278 83-208 (256)
129 TIGR01675 plant-AP plant acid 90.9 1.7 3.7E-05 42.1 9.6 37 143-179 122-158 (229)
130 PF05152 DUF705: Protein of un 90.8 0.59 1.3E-05 46.5 6.3 65 133-206 134-198 (297)
131 PF11019 DUF2608: Protein of u 90.0 1.6 3.5E-05 42.6 8.8 126 136-281 76-210 (252)
132 KOG1615 Phosphoserine phosphat 90.0 1.1 2.3E-05 42.6 7.0 94 142-267 89-187 (227)
133 TIGR01116 ATPase-IIA1_Ca sarco 89.9 0.64 1.4E-05 53.5 6.7 108 143-274 539-651 (917)
134 COG4850 Uncharacterized conser 89.4 1.2 2.6E-05 45.2 7.2 58 143-200 198-260 (373)
135 COG1778 Low specificity phosph 88.7 0.34 7.3E-06 44.3 2.6 78 150-275 44-121 (170)
136 TIGR01497 kdpB K+-transporting 88.5 0.96 2.1E-05 50.3 6.5 35 144-178 449-483 (675)
137 PF03767 Acid_phosphat_B: HAD 88.1 0.29 6.2E-06 47.2 1.9 38 142-179 116-153 (229)
138 COG2217 ZntA Cation transport 87.7 1 2.2E-05 50.5 6.1 73 144-266 540-612 (713)
139 TIGR01452 PGP_euk phosphoglyco 87.5 1.2 2.7E-05 43.6 6.1 31 143-173 20-50 (279)
140 COG4996 Predicted phosphatase 85.9 2.8 6.1E-05 37.4 6.7 58 132-198 32-89 (164)
141 COG5610 Predicted hydrolase (H 84.9 2.3 5E-05 45.0 6.6 116 136-288 93-210 (635)
142 TIGR01689 EcbF-BcbF capsule bi 84.6 2.9 6.2E-05 36.8 6.2 65 125-200 9-87 (126)
143 TIGR01680 Veg_Stor_Prot vegeta 83.1 7.8 0.00017 38.5 9.2 36 144-179 148-183 (275)
144 PF03031 NIF: NLI interacting 81.6 3.6 7.7E-05 36.5 5.8 54 136-198 31-84 (159)
145 PRK14010 potassium-transportin 81.4 3.6 7.7E-05 45.9 6.9 78 144-271 444-521 (673)
146 TIGR01458 HAD-SF-IIA-hyp3 HAD- 80.5 2.1 4.6E-05 41.6 4.3 36 143-178 23-58 (257)
147 TIGR01457 HAD-SF-IIA-hyp2 HAD- 80.1 2.6 5.6E-05 40.8 4.7 52 143-200 19-70 (249)
148 PRK01122 potassium-transportin 79.9 4.2 9.1E-05 45.4 6.8 35 144-178 448-482 (679)
149 TIGR02463 MPGP_rel mannosyl-3- 78.2 3.1 6.6E-05 38.9 4.4 34 241-275 184-217 (221)
150 COG0731 Fe-S oxidoreductases [ 76.4 4.6 0.0001 40.6 5.3 27 143-169 94-121 (296)
151 KOG0207 Cation transport ATPas 73.7 10 0.00022 43.4 7.5 73 144-266 726-798 (951)
152 TIGR01524 ATPase-IIIB_Mg magne 73.1 5.3 0.00012 45.8 5.4 99 144-271 518-620 (867)
153 KOG2882 p-Nitrophenyl phosphat 72.9 4.1 9E-05 40.9 3.9 35 143-177 40-74 (306)
154 COG4087 Soluble P-type ATPase 72.4 13 0.00029 33.2 6.5 90 145-283 34-123 (152)
155 PF09949 DUF2183: Uncharacteri 70.8 12 0.00026 31.5 5.7 27 160-186 2-28 (100)
156 smart00775 LNS2 LNS2 domain. T 70.6 7 0.00015 35.2 4.6 36 143-178 29-64 (157)
157 TIGR01517 ATPase-IIB_Ca plasma 70.0 9.3 0.0002 44.2 6.5 100 144-270 582-685 (941)
158 PRK01158 phosphoglycolate phos 68.4 3.2 7E-05 38.8 2.0 35 241-276 162-196 (230)
159 TIGR02463 MPGP_rel mannosyl-3- 65.7 9.5 0.0002 35.5 4.6 34 145-178 20-53 (221)
160 TIGR01482 SPP-subfamily Sucros 64.3 4.5 9.7E-05 37.6 2.1 35 241-276 154-188 (225)
161 PRK10517 magnesium-transportin 62.3 11 0.00024 43.5 5.1 97 144-269 553-653 (902)
162 PRK15122 magnesium-transportin 61.7 12 0.00027 43.1 5.4 98 144-270 553-654 (903)
163 TIGR01460 HAD-SF-IIA Haloacid 61.5 11 0.00025 35.9 4.3 37 143-179 16-52 (236)
164 TIGR01485 SPP_plant-cyano sucr 61.4 7.1 0.00015 37.4 2.9 45 241-287 172-216 (249)
165 PRK00192 mannosyl-3-phosphogly 58.2 7.8 0.00017 37.7 2.6 37 241-278 195-232 (273)
166 TIGR01484 HAD-SF-IIB HAD-super 58.0 16 0.00035 33.4 4.6 36 142-177 18-53 (204)
167 TIGR01657 P-ATPase-V P-type AT 57.6 45 0.00097 39.3 9.1 35 144-178 659-693 (1054)
168 TIGR01487 SPP-like sucrose-pho 57.6 6.1 0.00013 36.7 1.7 36 241-277 152-187 (215)
169 TIGR01647 ATPase-IIIA_H plasma 57.5 18 0.0004 40.8 5.7 103 144-270 445-551 (755)
170 TIGR00685 T6PP trehalose-phosp 56.8 8.4 0.00018 36.9 2.6 41 241-282 172-219 (244)
171 PRK10513 sugar phosphate phosp 56.2 29 0.00063 33.2 6.2 36 143-178 22-57 (270)
172 PRK00192 mannosyl-3-phosphogly 55.2 18 0.00038 35.2 4.6 35 144-178 24-58 (273)
173 COG0561 Cof Predicted hydrolas 55.1 18 0.0004 34.6 4.6 36 143-178 22-57 (264)
174 PF00834 Ribul_P_3_epim: Ribul 54.8 25 0.00054 33.2 5.4 51 144-207 92-142 (201)
175 TIGR01523 ATPase-IID_K-Na pota 54.6 16 0.00035 42.9 4.8 36 143-178 648-683 (1053)
176 TIGR01494 ATPase_P-type ATPase 53.8 21 0.00045 38.0 5.2 35 144-178 350-384 (499)
177 TIGR00099 Cof-subfamily Cof su 52.2 22 0.00049 33.8 4.7 36 143-178 18-53 (256)
178 TIGR01484 HAD-SF-IIB HAD-super 50.6 8.8 0.00019 35.2 1.5 34 241-275 168-201 (204)
179 COG0474 MgtA Cation transport 49.7 32 0.0007 39.8 6.2 103 144-272 550-657 (917)
180 cd05014 SIS_Kpsf KpsF-like pro 49.5 17 0.00037 30.7 3.0 31 143-173 60-90 (128)
181 TIGR00099 Cof-subfamily Cof su 48.6 11 0.00023 36.1 1.8 35 240-275 192-226 (256)
182 PF08282 Hydrolase_3: haloacid 48.6 30 0.00066 31.7 4.8 36 143-178 17-52 (254)
183 KOG4549 Magnesium-dependent ph 48.5 86 0.0019 28.0 7.1 54 122-176 23-80 (144)
184 PRK10187 trehalose-6-phosphate 47.3 15 0.00032 35.9 2.6 40 240-280 178-220 (266)
185 cd06533 Glyco_transf_WecG_TagA 47.0 61 0.0013 29.5 6.5 49 144-203 33-81 (171)
186 COG0036 Rpe Pentose-5-phosphat 47.0 32 0.00069 33.2 4.7 52 143-207 95-146 (220)
187 TIGR01487 SPP-like sucrose-pho 46.8 31 0.00068 31.9 4.7 36 143-178 20-55 (215)
188 TIGR01482 SPP-subfamily Sucros 46.4 32 0.0007 31.8 4.7 36 143-178 17-52 (225)
189 TIGR02471 sucr_syn_bact_C sucr 46.4 20 0.00044 33.8 3.4 45 241-288 164-208 (236)
190 PRK01158 phosphoglycolate phos 45.8 34 0.00073 31.8 4.7 36 143-178 22-57 (230)
191 KOG2630 Enolase-phosphatase E- 45.7 33 0.00073 33.5 4.6 110 124-281 116-225 (254)
192 cd05008 SIS_GlmS_GlmD_1 SIS (S 44.3 25 0.00055 29.5 3.3 31 143-173 59-89 (126)
193 PRK08745 ribulose-phosphate 3- 43.9 38 0.00082 32.6 4.8 52 144-208 97-148 (223)
194 TIGR01106 ATPase-IIC_X-K sodiu 43.8 45 0.00097 39.0 6.2 35 144-178 571-605 (997)
195 PF13304 AAA_21: AAA domain; P 43.4 16 0.00034 32.9 2.0 38 131-168 261-300 (303)
196 PRK08883 ribulose-phosphate 3- 43.2 40 0.00087 32.3 4.8 51 144-207 93-143 (220)
197 PF00072 Response_reg: Respons 43.0 1.1E+02 0.0023 24.3 6.8 98 141-287 5-107 (112)
198 PRK03669 mannosyl-3-phosphogly 41.6 41 0.00088 32.6 4.7 48 124-178 14-61 (271)
199 KOG1618 Predicted phosphatase 41.3 22 0.00048 36.3 2.7 31 252-282 297-342 (389)
200 PRK10976 putative hydrolase; P 40.5 16 0.00036 34.9 1.7 33 241-274 195-227 (266)
201 PF03808 Glyco_tran_WecB: Glyc 40.5 1E+02 0.0022 28.0 6.9 53 140-203 31-83 (172)
202 TIGR01486 HAD-SF-IIB-MPGP mann 38.1 24 0.00052 33.8 2.5 36 241-277 181-218 (256)
203 KOG3111 D-ribulose-5-phosphate 37.9 46 0.001 31.7 4.1 51 144-207 99-149 (224)
204 PRK10513 sugar phosphate phosp 37.3 20 0.00043 34.4 1.7 37 241-279 201-237 (270)
205 TIGR02461 osmo_MPG_phos mannos 37.0 54 0.0012 31.1 4.7 35 144-178 18-52 (225)
206 TIGR01486 HAD-SF-IIB-MPGP mann 36.8 73 0.0016 30.4 5.6 34 145-178 20-53 (256)
207 PRK08091 ribulose-phosphate 3- 36.7 60 0.0013 31.5 4.9 52 144-208 103-156 (228)
208 PRK10976 putative hydrolase; P 35.9 55 0.0012 31.3 4.6 36 143-178 21-56 (266)
209 PF08282 Hydrolase_3: haloacid 35.2 29 0.00063 31.8 2.5 26 241-267 191-216 (254)
210 PRK15126 thiamin pyrimidine py 35.2 58 0.0013 31.3 4.6 36 143-178 21-56 (272)
211 KOG2116 Protein involved in pl 34.9 3E+02 0.0065 31.0 10.2 124 145-295 562-697 (738)
212 PRK10530 pyridoxal phosphate ( 34.7 60 0.0013 30.9 4.6 36 143-178 22-57 (272)
213 PRK12702 mannosyl-3-phosphogly 34.3 64 0.0014 32.6 4.8 41 136-178 15-55 (302)
214 PF01380 SIS: SIS domain SIS d 34.3 47 0.001 27.7 3.4 31 143-173 66-96 (131)
215 COG1208 GCD1 Nucleoside-diphos 34.1 2.1E+02 0.0045 29.4 8.7 99 144-284 33-138 (358)
216 PF00571 CBS: CBS domain CBS d 33.7 56 0.0012 23.1 3.3 39 132-170 4-42 (57)
217 PLN02349 glycerol-3-phosphate 33.2 3E+02 0.0065 29.1 9.5 52 127-179 171-222 (426)
218 PRK08005 epimerase; Validated 33.1 74 0.0016 30.4 4.9 52 144-208 93-144 (210)
219 PLN03008 Phospholipase D delta 32.9 42 0.00091 38.5 3.6 64 103-167 232-303 (868)
220 PRK15126 thiamin pyrimidine py 32.7 24 0.00052 34.0 1.5 37 241-279 193-229 (272)
221 TIGR02826 RNR_activ_nrdG3 anae 32.6 59 0.0013 29.1 3.9 25 144-168 75-99 (147)
222 COG1209 RfbA dTDP-glucose pyro 32.4 1.7E+02 0.0037 29.3 7.3 25 144-168 32-56 (286)
223 TIGR03127 RuMP_HxlB 6-phospho 31.6 49 0.0011 29.9 3.3 31 143-173 85-115 (179)
224 cd05710 SIS_1 A subgroup of th 31.3 54 0.0012 27.8 3.3 33 143-175 60-92 (120)
225 COG2503 Predicted secreted aci 30.9 2E+02 0.0043 28.5 7.3 38 142-179 123-161 (274)
226 TIGR00441 gmhA phosphoheptose 30.5 76 0.0016 28.2 4.3 30 143-172 92-121 (154)
227 TIGR01485 SPP_plant-cyano sucr 30.0 99 0.0022 29.4 5.3 36 143-178 23-58 (249)
228 PRK13937 phosphoheptose isomer 29.8 53 0.0011 30.3 3.2 31 143-173 119-149 (188)
229 TIGR01105 galF UTP-glucose-1-p 29.7 2.4E+02 0.0053 28.0 8.2 33 143-178 34-67 (297)
230 smart00098 alkPPc Alkaline pho 29.5 65 0.0014 34.1 4.1 57 143-203 84-163 (419)
231 PTZ00174 phosphomannomutase; P 29.3 1E+02 0.0023 29.4 5.3 32 143-174 24-55 (247)
232 TIGR02461 osmo_MPG_phos mannos 28.8 42 0.00091 31.9 2.4 33 241-274 186-220 (225)
233 COG3700 AphA Acid phosphatase 28.8 4.1E+02 0.0088 25.3 8.7 112 128-281 101-212 (237)
234 TIGR02245 HAD_IIID1 HAD-superf 28.6 75 0.0016 30.0 4.0 41 137-178 41-81 (195)
235 TIGR00696 wecB_tagA_cpsF bacte 28.3 1.9E+02 0.0041 26.7 6.6 49 146-207 37-85 (177)
236 cd05006 SIS_GmhA Phosphoheptos 27.8 59 0.0013 29.4 3.1 31 143-173 114-144 (177)
237 PRK13762 tRNA-modifying enzyme 27.4 53 0.0011 33.3 3.0 25 144-168 145-169 (322)
238 PF05240 APOBEC_C: APOBEC-like 27.4 43 0.00093 25.3 1.7 29 143-171 1-29 (55)
239 cd05013 SIS_RpiR RpiR-like pro 27.3 78 0.0017 26.3 3.6 26 144-169 74-99 (139)
240 cd05005 SIS_PHI Hexulose-6-pho 26.9 78 0.0017 28.6 3.8 31 143-173 88-118 (179)
241 cd02538 G1P_TT_short G1P_TT_sh 26.7 3.5E+02 0.0075 25.3 8.3 33 144-178 32-65 (240)
242 PRK10187 trehalose-6-phosphate 25.9 75 0.0016 31.0 3.7 51 124-176 21-72 (266)
243 cd04189 G1P_TT_long G1P_TT_lon 25.7 3.9E+02 0.0085 24.6 8.4 32 144-178 32-64 (236)
244 PF08235 LNS2: LNS2 (Lipin/Ned 25.2 1.3E+02 0.0029 27.4 4.9 38 144-181 30-67 (157)
245 PF15290 Syntaphilin: Golgi-lo 24.5 2.1E+02 0.0045 28.7 6.3 23 325-347 115-137 (305)
246 PRK10076 pyruvate formate lyas 24.4 1.3E+02 0.0029 28.5 5.0 34 145-178 55-90 (213)
247 PF14251 DUF4346: Domain of un 22.8 73 0.0016 27.8 2.5 38 16-53 36-73 (119)
248 COG0561 Cof Predicted hydrolas 22.6 52 0.0011 31.5 1.8 26 241-267 194-219 (264)
249 COG4030 Uncharacterized protei 22.2 68 0.0015 31.5 2.4 34 144-178 86-119 (315)
250 TIGR01456 CECR5 HAD-superfamil 21.8 1E+02 0.0022 30.9 3.8 26 143-168 18-47 (321)
251 cd04795 SIS SIS domain. SIS (S 21.5 1.1E+02 0.0025 23.4 3.3 22 143-164 60-81 (87)
252 PRK03669 mannosyl-3-phosphogly 20.9 64 0.0014 31.2 2.0 37 241-279 192-231 (271)
253 PRK14804 ornithine carbamoyltr 20.4 81 0.0018 31.8 2.7 39 244-282 142-186 (311)
254 COG2524 Predicted transcriptio 20.3 2.1E+02 0.0046 28.6 5.4 57 111-168 219-275 (294)
255 PLN02177 glycerol-3-phosphate 20.2 2.7E+02 0.006 30.1 6.8 28 150-178 116-144 (497)
256 cd05017 SIS_PGI_PMI_1 The memb 20.0 1.4E+02 0.003 25.1 3.8 25 143-167 56-80 (119)
No 1
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=100.00 E-value=2.8e-125 Score=973.95 Aligned_cols=402 Identities=42% Similarity=0.745 Sum_probs=332.1
Q ss_pred CCcCCCCchhhhCCCCCCCCcccCeeeecCCCeEEEecCCCceeeeccccCCCCCCHHHHHHHhCCcccccCcccCcccc
Q 014930 1 MVNEFRYPEVCISFKYDPNFPIRGLYYDKQKGCLLKLDFFGSIEPDGCYFGRRKLSRKEIAEIYGTRHIGRDQARGLVGL 80 (415)
Q Consensus 1 LV~~~gYP~~ll~~~ydp~F~iRGL~~D~~~GnlLKld~~g~I~~~~~~hG~~~ls~eEi~~~Y~~~~i~~~~~~~~~~l 80 (415)
||+++|||++|++++|||+|+||||++|+++|||||||++|+|++ |+||+++|+.|||+++||+++|+.+..++|+.+
T Consensus 43 LV~~~gYP~~ll~~~~dp~F~iRGL~~D~~~GnlLKld~~g~I~~--a~hG~~~l~~eei~~~Y~~~~i~~~~~~~~~~l 120 (448)
T PF05761_consen 43 LVEEKGYPEELLNLEYDPDFAIRGLVIDKERGNLLKLDRFGYILR--AYHGFRPLSDEEIRELYGNKFIPLSDDSRFFQL 120 (448)
T ss_dssp HHHHTT--GGGGG----CCC--TTEEEETTTTEEEEEBTTSBEEE--EEETTEEE-HHHHCCCCTTSB--TTSTTTEEEE
T ss_pred HHhccCCCHHHhCCCCchhhhhcceeeEcccCeEEEEcCCCcEEE--EEeccccCCHHHHHHhcCCcccccchhhHHHHH
Confidence 688899999999999999999999999999999999999999996 799999999999999999999998777689999
Q ss_pred cccccchHHHHHHHHHHHHh--hcCCCCChHHHHHHHHHHHHHhhcchhhHHHHhcCcccccccchhHHHHHHHHHHcCC
Q 014930 81 MDFFCFTEACLIADIVQYFV--DAKLEFDASYIYEDVNRAIQHVHRRGLVHRGILSDPNRYLVKNGQVLQFVKMLREKGK 158 (415)
Q Consensus 81 ~dlF~lpe~~L~a~lvd~~~--~~~~~~~~~~l~~DV~~av~~~h~~G~lk~~v~~np~kYi~k~p~l~~~L~~Lr~~Gk 158 (415)
+|+|++||+||||++||+++ +.++.+++..||+||++||++||.+|.+|++|++||+|||+|+|++++||++||++||
T Consensus 121 ~tlFslpe~~L~a~lvd~~d~~~~~~~~~~~~l~~DV~~Avd~~H~~G~lk~~v~~dp~kYi~k~~~l~~~L~~lr~~GK 200 (448)
T PF05761_consen 121 NTLFSLPEAYLFAQLVDYFDVEDGNIEYDYRSLYQDVRDAVDHVHRDGSLKREVKEDPEKYIHKDPKLPPWLERLRSAGK 200 (448)
T ss_dssp -SCCHHHHHHHHHHHHHHHHECCTTCCEEHHHHHHHHHHHHHHHHHCSCHHHHHHTTCCCCEE--CHHHHHHHHHHCCT-
T ss_pred hhHhhhhHHHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHHHHHhcchHHHHHHHHCHHHHccCCchHHHHHHHHHhcCc
Confidence 99999999999999999999 7778889999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeCCChhhhHHHHHhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCCceeeccCcccccccc-cccccCCeeec
Q 014930 159 KLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDTEKDTLAFTK-VDAFIPNKIYY 237 (415)
Q Consensus 159 klfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~~~FD~vi~~a~KP~FF~~~~~fr~vd~~~~~~~~~~-~~~l~~g~vY~ 237 (415)
|+||||||+|+||+.+|+|+++..++.+++|++|||+|||+|+||.||++++|||+||+++|++.+++ ++++++|+||+
T Consensus 201 klFLiTNS~~~yt~~~M~yl~g~~~~~~~dW~dlFDvVIv~A~KP~FF~~~~pfr~vd~~~g~l~~~~~~~~l~~g~vY~ 280 (448)
T PF05761_consen 201 KLFLITNSPFDYTNAVMSYLLGPFLGEDPDWRDLFDVVIVDARKPGFFTEGRPFREVDTETGKLKWGKYVGPLEKGKVYS 280 (448)
T ss_dssp EEEEE-SS-HHHHHHHHHHHCGCCSSTTT-GGGCECEEEES--CCHHHCT---EEEEETTTSSEECS---SS--TC-EEE
T ss_pred eEEEecCCCCchhhhhhhhccCCCCCCCCChhhheeEEEEcCCCCcccCCCCceEEEECCCCccccccccccccCCCEee
Confidence 99999999999999999999999888888999999999999999999999999999999999999998 89999999999
Q ss_pred cCcHHHHHHHhCCCCCcEEEEccccccccccccc-CCceEEEEeccchhHHHHhhchhhHHHHHHHHHHHHHHHHHhhhh
Q 014930 238 HGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSK-AGWRTAAIIHELESEIRIQNDETYRFEQAKFHIIQELLGKLHATV 316 (415)
Q Consensus 238 ~G~~~~~~~~~g~~g~~vLYvGDhi~~Di~~~k~-~GwrT~lVvpEL~~Ei~~~~~~~~~~~~~~l~~l~~l~~~~~~~~ 316 (415)
|||+.++++++||+|++|||||||||+||+.+++ +||||+||||||++||++|++++++.++ |+.|+.++++++...
T Consensus 281 gGn~~~l~~ll~~~g~~VLY~GDhi~~Di~~~k~~~gWrT~~Ii~ELe~Ei~~~~~~~~~~~~--l~~L~~~~~~~~~~~ 358 (448)
T PF05761_consen 281 GGNWDQLHKLLGWRGKEVLYFGDHIYGDILKSKKRHGWRTAAIIPELEQEIEIWNSKKYRFEE--LQELEELLEELQDHL 358 (448)
T ss_dssp E--HHHHHHHCT--GGGEEEEESSTTTTHHHHHHHH-SEEEEE-TTHHHHHHHHHHTHHHHHH--HHHHHHHCHHHHCHH
T ss_pred cCCHHHHHHHHccCCCeEEEECCchhhhhhhhccccceEEEEEehhhhhhhhhhhhcchhhhH--HHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999998765 7999999999999999999998887765 778888888887654
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccCCCCCcchhhhhhhcccccccccccccccCCCCccccCCC
Q 014930 317 ANSQRTEACQLLLAELNEERQKARRMMKKMFNKSFGATFLTDTGQESAFAYHIHRYADVYTSKAENFLLYPPEAWLHVPF 396 (415)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fn~~~Gslfrt~~~~~S~Fa~qv~ryAdlYtS~v~Nll~y~~~~~fr~~~ 396 (415)
+...+.++.+..+++|+++|++++++|+++|||+|||||||++ ++|+||+||+||||||||+|+||++|||+++||||+
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fn~~~GslfRtg~-~~s~Fa~qv~RyAdlYtS~v~Nll~y~~~~~Fr~~~ 437 (448)
T PF05761_consen 359 DQLRSSSELRPDISELRKERRELRREMKELFNPQFGSLFRTGH-NPSYFARQVERYADLYTSSVSNLLNYSPNYYFRPPR 437 (448)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-TTT-BSSEETT-EEBHHHHHHHHH-SEEESSHHHHHHS-TT-EE----
T ss_pred cccccchhhHHHHHHHHHHHHHHHHHHhhhcccchHHHHhcCC-CccHHHHHHHHHhhhhhccccHHHhCCcceEEeCCC
Confidence 3233556778889999999999999999999999999999975 699999999999999999999999999999999997
Q ss_pred CcCCCCCCCCcCC
Q 014930 397 DIKIMPHHVKVPS 409 (415)
Q Consensus 397 ~~~~mpHe~~~~~ 409 (415)
.+||||++|++
T Consensus 438 --~~lpHE~~~~~ 448 (448)
T PF05761_consen 438 --DLLPHESTVWH 448 (448)
T ss_dssp -----CCG-----
T ss_pred --CCCCCCCCCCC
Confidence 49999998864
No 2
>KOG2470 consensus Similar to IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=100.00 E-value=2.7e-114 Score=842.68 Aligned_cols=392 Identities=54% Similarity=0.910 Sum_probs=378.6
Q ss_pred CCcCCCCchhhhCCCCCCCCcccCeeeecCCCeEEEecCCCceeeeccccCCCCCCHHHHHHHhCCcccccCcc------
Q 014930 1 MVNEFRYPEVCISFKYDPNFPIRGLYYDKQKGCLLKLDFFGSIEPDGCYFGRRKLSRKEIAEIYGTRHIGRDQA------ 74 (415)
Q Consensus 1 LV~~~gYP~~ll~~~ydp~F~iRGL~~D~~~GnlLKld~~g~I~~~~~~hG~~~ls~eEi~~~Y~~~~i~~~~~------ 74 (415)
||+++.||+.|+.++|||+|+||||++|+++|.|+|+|+|++|+.++||+|.++++++||.++||+++|+.+..
T Consensus 95 lvn~frYPe~i~q~eYdPnFaIRGLhYDv~kglLmKlDaF~~iqlgt~YrGr~kv~~eEvi~mY~~rhipl~q~~g~~~k 174 (510)
T KOG2470|consen 95 LVNEFRYPEVIRQYEYDPNFAIRGLHYDVQKGLLMKLDAFHYIQLGTVYRGRRKVPDEEVIEMYGGRHIPLDQMSGFYGK 174 (510)
T ss_pred HHHhccChHHhhhcccCCCcccchhhhHhhhhhheeeccceeeccCceeecCccCCHHHHHHHhcCCccCHHHhcCccCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999987643
Q ss_pred -cCcccccccccchHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHhhcchhhHHHHhcCcccccccchhHHHHHHHH
Q 014930 75 -RGLVGLMDFFCFTEACLIADIVQYFVDAKLEFDASYIYEDVNRAIQHVHRRGLVHRGILSDPNRYLVKNGQVLQFVKML 153 (415)
Q Consensus 75 -~~~~~l~dlF~lpe~~L~a~lvd~~~~~~~~~~~~~l~~DV~~av~~~h~~G~lk~~v~~np~kYi~k~p~l~~~L~~L 153 (415)
.++.+++|+||+||+||++|+|+||.++.++++++.+|+||.+|+.+||..|.+ +|.+|.+|||.+.|++..+|++|
T Consensus 175 ~~~mvqlmDiFs~pEmcLls~vveYF~~~~lefd~~~ly~Dv~~ai~~vH~~~~~--~i~~~~ekyi~r~~ql~~fl~kL 252 (510)
T KOG2470|consen 175 GSKMVQLMDIFSLPEMCLLSCVVEYFLDNKLEFDPSHLYKDVNDAIRDVHRKGHM--KIESDLEKYIERNPQLLAFLRKL 252 (510)
T ss_pred CchHHHHHHHhccHHHHHHHHHHHHHHhccccCCHHHHHHhHHHHHHHhhhhhhH--HHhhchHHHhhccHHHHHHHHHH
Confidence 347899999999999999999999999999999999999999999999999998 89999999999999999999999
Q ss_pred HHcCCeEEEEeCCChhhhHHHHHhhhccCCCCCCCccCCccEEEEcCCCCCCCCCC-CCceeeccCcccccccccccccC
Q 014930 154 REKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSD-HPFRCYDTEKDTLAFTKVDAFIP 232 (415)
Q Consensus 154 r~~GkklfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~~~FD~vi~~a~KP~FF~~~-~~fr~vd~~~~~~~~~~~~~l~~ 232 (415)
+++|||+|||||||+.||+.+|+|+. |.+||++|||||+.|.||.||++. ||||.+|.++|++.|.++..+++
T Consensus 253 ~~~GKklFLiTNSPysFVd~GM~flv------G~~WRdlFDVVIvqA~KP~Fftde~rPfR~~dek~~sl~wdkv~klek 326 (510)
T KOG2470|consen 253 KDHGKKLFLITNSPYSFVDKGMRFLV------GDDWRDLFDVVIVQANKPEFFTDERRPFRKYDEKRGSLLWDKVDKLEK 326 (510)
T ss_pred HHhcCcEEEEeCCchhhhhcCceeee------CccHHhhhheeEEecCCCcccccccCcchhhcccccchhhhhhhhccc
Confidence 99999999999999999999999998 999999999999999999999986 59999999999999999999999
Q ss_pred CeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccc-cCCceEEEEeccchhHHHHhhchhhHHHHHHHHHHHHHHHH
Q 014930 233 NKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPS-KAGWRTAAIIHELESEIRIQNDETYRFEQAKFHIIQELLGK 311 (415)
Q Consensus 233 g~vY~~G~~~~~~~~~g~~g~~vLYvGDhi~~Di~~~k-~~GwrT~lVvpEL~~Ei~~~~~~~~~~~~~~l~~l~~l~~~ 311 (415)
|+||.+||+.++++++||+|++|||||||+|+|+++.. ++||||+||||||++||.++|+++|+++++|++.|+.|+++
T Consensus 327 gkiYy~G~l~~flelt~WrG~~VlYFGDHlySDLad~tlkhgWRTgAII~EL~~Eiki~N~e~y~~s~~w~q~lt~Ller 406 (510)
T KOG2470|consen 327 GKIYYQGNLKSFLELTGWRGPRVLYFGDHLYSDLADLTLKHGWRTGAIIPELEREIKIQNTEQYRFSQTWLQILTGLLER 406 (510)
T ss_pred CceeeeccHHHHHHHhccCCCeeEEecCcchhhhhhhHhhcccccccchHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999886 89999999999999999999999999999999999999999
Q ss_pred HhhhhccccchHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccCCCCCcchhhhhhhcccccccccccccccCCCCcc
Q 014930 312 LHATVANSQRTEACQLLLAELNEERQKARRMMKKMFNKSFGATFLTDTGQESAFAYHIHRYADVYTSKAENFLLYPPEAW 391 (415)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fn~~~Gslfrt~~~~~S~Fa~qv~ryAdlYtS~v~Nll~y~~~~~ 391 (415)
+|. +++++++.++++|.+||+++|..+|++||.+|||+|||.+| ||+|++++.||||||||+++|||+|++.|+
T Consensus 407 ~q~-----~rseasq~~L~ew~~eRq~lR~~tK~~FN~qFGs~FrT~~n-ptyFsrrl~rfaDiYts~lsnlL~y~~~ht 480 (510)
T KOG2470|consen 407 MQA-----QRSEASQSVLDEWMKERQELRDTTKQMFNAQFGSTFRTDHN-PTYFSRRLHRFADIYTSSLSNLLNYRVEHT 480 (510)
T ss_pred HHh-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcceeeccCC-ccHHHHHHHHHHHHHhccHHHHHhcCcccc
Confidence 984 45688999999999999999999999999999999999997 999999999999999999999999999999
Q ss_pred ccCCCCcCCCCCCCCcC
Q 014930 392 LHVPFDIKIMPHHVKVP 408 (415)
Q Consensus 392 fr~~~~~~~mpHe~~~~ 408 (415)
|++++ +.||||..+.
T Consensus 481 fYprr--~~mpHe~~~~ 495 (510)
T KOG2470|consen 481 FYPRR--TPMPHEVPVW 495 (510)
T ss_pred cCCcC--CCCccccccc
Confidence 99885 7999998764
No 3
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=100.00 E-value=2.2e-87 Score=671.12 Aligned_cols=290 Identities=47% Similarity=0.856 Sum_probs=277.1
Q ss_pred CCcCCCCchhhhCCCCCCCCcccCeeeecCCCeEEEecCCCceeeeccccCCCCCCHHHHHHHhCCcccccCcccCcccc
Q 014930 1 MVNEFRYPEVCISFKYDPNFPIRGLYYDKQKGCLLKLDFFGSIEPDGCYFGRRKLSRKEIAEIYGTRHIGRDQARGLVGL 80 (415)
Q Consensus 1 LV~~~gYP~~ll~~~ydp~F~iRGL~~D~~~GnlLKld~~g~I~~~~~~hG~~~ls~eEi~~~Y~~~~i~~~~~~~~~~l 80 (415)
||+++|||++|++++|||+|+||||++|+++|||||+|++|+|++ |+||+++||.+|+.++||+++++.++..+++.+
T Consensus 43 LV~~~gYp~~l~~~~~d~~f~iRGL~~D~~~GnllKld~~g~I~~--~~hG~~~l~~~e~~~~Y~~~~~~~~~~~~~~~l 120 (343)
T TIGR02244 43 LVKRFGYPEELLSFAYDPTFAIRGLVFDKLKGNLLKLDRFGNILR--GYHGLRPLSDKEVQEIYGNKYISRSNGDRYYLL 120 (343)
T ss_pred HHHhcCCChHHhCCcCCCcccccceeeEcccCeEEEEcCCCcEEE--EecCCccCCHHHHHHHcCccccCCCCCccEEEe
Confidence 688899999999999999999999999999999999999999998 579999999999999999999988776689999
Q ss_pred cccccchHHHHHHHHHHHHhhc---CCCCChHHHHHHHHHHHHHhhcchhhHHHHhcCcccccccchhHHHHHHHHHHcC
Q 014930 81 MDFFCFTEACLIADIVQYFVDA---KLEFDASYIYEDVNRAIQHVHRRGLVHRGILSDPNRYLVKNGQVLQFVKMLREKG 157 (415)
Q Consensus 81 ~dlF~lpe~~L~a~lvd~~~~~---~~~~~~~~l~~DV~~av~~~h~~G~lk~~v~~np~kYi~k~p~l~~~L~~Lr~~G 157 (415)
+|+||+||||||||+||+|+++ +..+++.+||+||++||++||.+|.+|++|++||++||+++|+++++|++||++|
T Consensus 121 ~tlF~lpe~~L~a~lvd~~~~~~~~~~~~~~~~~~~dv~~av~~~h~~g~lk~~v~~dp~~yv~~~pgl~elL~~Lr~~G 200 (343)
T TIGR02244 121 DTLFSLPEACLIAQLVDYFDDHPKGPLAFDYRQIYQDVRDALDWVHRKGSLKKKVMENPEKYVLRDPKLPLFLSKLKEHG 200 (343)
T ss_pred cccccchHHHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHhcccchHHHHHHHCHHHHhccchhHHHHHHHHHHCC
Confidence 9999999999999999999877 6678999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEeCCChhhhHHHHHhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCCceeeccCcccccccccccccCCeeec
Q 014930 158 KKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDTEKDTLAFTKVDAFIPNKIYY 237 (415)
Q Consensus 158 kklfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~~~FD~vi~~a~KP~FF~~~~~fr~vd~~~~~~~~~~~~~l~~g~vY~ 237 (415)
+|+||+|||+++||+.+|+++++.++ .+++|++|||+||++|+||+||++++|||+||+++|.++++.+..+++|+||+
T Consensus 201 ~klfLvTNS~~~yt~~im~~l~g~~~-~~~~w~~yFD~IIt~a~KP~FF~~~~pf~~v~~~~g~~~~~~~~~l~~g~vY~ 279 (343)
T TIGR02244 201 KKLFLLTNSDYDYTDKGMKYLLGPFL-GEHDWRDYFDVVIVDARKPGFFTEGRPFRQVDVETGSLKWGEVDGLEPGKVYS 279 (343)
T ss_pred CeEEEEeCCCHHHHHHHHHHhhCCcc-cccchHhhCcEEEeCCCCCcccCCCCceEEEeCCCCcccCCccccccCCCeEe
Confidence 99999999999999999999875555 56899999999999999999999999999999999999999988899999999
Q ss_pred cCcHHHHHHHhCCCCCcEEEEcccccccccccc-cCCceEEEEeccchhHHHHhhch
Q 014930 238 HGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPS-KAGWRTAAIIHELESEIRIQNDE 293 (415)
Q Consensus 238 ~G~~~~~~~~~g~~g~~vLYvGDhi~~Di~~~k-~~GwrT~lVvpEL~~Ei~~~~~~ 293 (415)
|||+.++++++|+++++||||||||++||++++ .+||+|++|+|||+.|+++|.+.
T Consensus 280 gGn~~~~~~~l~~~~~~vlYvGD~i~~Di~~~kk~~Gw~TvlI~pEL~~E~~~~~~~ 336 (343)
T TIGR02244 280 GGSLKQFHELLKWRGKEVLYFGDHIYGDLLRSKKKRGWRTAAIIPELEQEVGILTNS 336 (343)
T ss_pred CCCHHHHHHHHCCCCCcEEEECCcchHHHHhhHHhcCcEEEEEchhHHHHHHHHhhc
Confidence 999999999999999999999999999999987 79999999999999999999543
No 4
>KOG2469 consensus IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=100.00 E-value=3e-79 Score=609.35 Aligned_cols=362 Identities=32% Similarity=0.499 Sum_probs=319.1
Q ss_pred CCcCCCCchhhhCCCCCCCCcccCeeeecCCCeEEEecCCCceeeeccccCCCCCCHHHHHHHhCCcccccCcccCcccc
Q 014930 1 MVNEFRYPEVCISFKYDPNFPIRGLYYDKQKGCLLKLDFFGSIEPDGCYFGRRKLSRKEIAEIYGTRHIGRDQARGLVGL 80 (415)
Q Consensus 1 LV~~~gYP~~ll~~~ydp~F~iRGL~~D~~~GnlLKld~~g~I~~~~~~hG~~~ls~eEi~~~Y~~~~i~~~~~~~~~~l 80 (415)
+|+..|||.+++.+.|||+|++|||++|.++||+||+|++|+|++ |+||+++++.+|+.++||++.++..+ .+++.+
T Consensus 57 ~l~~~Gyp~~ll~~~~d~~f~~rGL~ld~~~GN~lKld~~~~vl~--a~hg~rfls~~~~~eiyg~~~~~~~~-~~~~~l 133 (424)
T KOG2469|consen 57 LLKDKGYPNELLSTSFDWNFPCRGLVLDKERGNLLKLDRFGYVLR--AAHGTRFLSNEEISEIYGRKLVRLSD-SRYYLL 133 (424)
T ss_pred HHHhcCChhhhhccccCccceeeeeEEeccCCceeeeeccCceee--eccccccccccchhhhcccccccccC-chhhhh
Confidence 467799999999999999999999999999999999999999998 57999999999999999999988877 789999
Q ss_pred cccccchHHHHHHHHHHHHhhcCC----CCChHHHHHHHHHHHHHhhcchhhHHHHhcCcccccccchhHHHHHHHHHHc
Q 014930 81 MDFFCFTEACLIADIVQYFVDAKL----EFDASYIYEDVNRAIQHVHRRGLVHRGILSDPNRYLVKNGQVLQFVKMLREK 156 (415)
Q Consensus 81 ~dlF~lpe~~L~a~lvd~~~~~~~----~~~~~~l~~DV~~av~~~h~~G~lk~~v~~np~kYi~k~p~l~~~L~~Lr~~ 156 (415)
+|+|++||+.++||+||+++++.. -.++..+|+||++|++++|.+|.+|+.|+++|++||++++.++.||.++|++
T Consensus 134 ~t~F~~~ea~~~aq~vd~~d~~~~~~~~~~dyk~~~~~v~~~~~~~h~~~~lk~~~~~~pek~V~~d~~~v~~l~~~r~s 213 (424)
T KOG2469|consen 134 NTLFSMPEADLFAQAVDFLDNGPEYGPVDMDYKPGWKDVRAAGNAVHLYGLLKKKMMGKPERYVVYDGTIVPLLSMLRDS 213 (424)
T ss_pred hhhhhchhHHHHHhhcchhhcCCccCccchhhcchHHHHHHHHhHHHHHHHHHHHHhcCCCceeeecCccccchHHHHhh
Confidence 999999999999999998876643 2356779999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEeCCChhhhHHHHHhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCCceeeccCcccccccc-cccccCCee
Q 014930 157 GKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDTEKDTLAFTK-VDAFIPNKI 235 (415)
Q Consensus 157 GkklfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~~~FD~vi~~a~KP~FF~~~~~fr~vd~~~~~~~~~~-~~~l~~g~v 235 (415)
|||+||+|||.|+||+.+|++++ |.+|+.|||+|++.|+||+||.++.++|+|+|++|.++.+. .+++++|++
T Consensus 214 GKk~fl~Tns~~~ytd~~mt~~~------~~dW~~yfd~v~~~a~Kp~ff~e~~vlreV~t~~g~l~~g~~~~p~e~~~~ 287 (424)
T KOG2469|consen 214 GKKTFLHTNSDWDYTDIFMAFHY------GFDWETYFDLVETRAAKPGFFHEGTVLREVEPQEGLLKNGDNTGPLEQGGV 287 (424)
T ss_pred ccceEEeeccccchhhHHHHHHh------CCCcceeEEEEEEeccCCccccccceeeeeccccccccccccCCcchhccc
Confidence 99999999999999999999998 78999999999999999999999999999999999988854 567999999
Q ss_pred eccCcHHHHHHHhCCCCCcEEEEccccccccccc-ccCCceEEEEeccchhHHHHhhchhhHHHHHHHHHHHHHHHHHhh
Q 014930 236 YYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGP-SKAGWRTAAIIHELESEIRIQNDETYRFEQAKFHIIQELLGKLHA 314 (415)
Q Consensus 236 Y~~G~~~~~~~~~g~~g~~vLYvGDhi~~Di~~~-k~~GwrT~lVvpEL~~Ei~~~~~~~~~~~~~~l~~l~~l~~~~~~ 314 (415)
|+||+++.+++.++..|.++||+|||||+||+.+ ++.||||++|+|||+.|..+|...+.+..+ +......+++++.
T Consensus 288 ySggs~~~~~~~l~~~g~diLy~gdHi~~dvl~skk~~~wrt~lv~peL~~e~~v~~~~ke~~~e--l~~~~~~laDiy~ 365 (424)
T KOG2469|consen 288 YSGGSLKTVETSMKVKGKDILYGGDHIWGDVLVSKKRRGWRTVLVAPELEREDLVLLDSKEEFIE--LLNWSSKLADIYP 365 (424)
T ss_pred CCcchHHHHHHHhcccccceeecccceeeeEEecceecceEEEEEehhhhhhhhhhccchHHHHH--HhccchhhHhhcc
Confidence 9999999999999999999999999999999866 568999999999999999999987633322 2334455566655
Q ss_pred hhccccchHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccCCCCCcchhhhhhhcccccccc
Q 014930 315 TVANSQRTEACQLLLAELNEERQKARRMMKKMFNKSFGATFLTDTGQESAFAYHIHRYADVYTS 378 (415)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fn~~~Gslfrt~~~~~S~Fa~qv~ryAdlYtS 378 (415)
+...+..+ ...+...++++++++..|++ ++..|||+|||+ +|.|.||.|++||||+|||
T Consensus 366 ~l~~s~~s---~~~~~~~~r~~~~~~~~~dk-~~~~~~sl~~s~-~~~t~~a~q~~r~A~~y~s 424 (424)
T KOG2469|consen 366 NLDLSLLS---APKDLSIKRDIQKLTECMDK-FYGVWGSLFRTG-YQRTRFALQVERYADLYTS 424 (424)
T ss_pred CCchhhhh---cccccchhHHHHHHHHhHHH-HhcchHHhhccc-cccchHHHHHHHHHHHhcC
Confidence 43322211 11234466667778877775 557999999998 6899999999999999997
No 5
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=99.58 E-value=5.9e-15 Score=133.29 Aligned_cols=103 Identities=22% Similarity=0.285 Sum_probs=89.6
Q ss_pred chhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCCceeeccCcccc
Q 014930 143 NGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDTEKDTL 222 (415)
Q Consensus 143 ~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~~~FD~vi~~a~KP~FF~~~~~fr~vd~~~~~~ 222 (415)
.|++.+|+..||++|.+++++||+....+......+ |.+ .|..|+||.
T Consensus 48 tpe~~~W~~e~k~~gi~v~vvSNn~e~RV~~~~~~l-------~v~-------fi~~A~KP~------------------ 95 (175)
T COG2179 48 TPELRAWLAELKEAGIKVVVVSNNKESRVARAAEKL-------GVP-------FIYRAKKPF------------------ 95 (175)
T ss_pred CHHHHHHHHHHHhcCCEEEEEeCCCHHHHHhhhhhc-------CCc-------eeecccCcc------------------
Confidence 589999999999999999999999999999877765 555 699999991
Q ss_pred cccccccccCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCceEEEEeccchhHHHHhhchh
Q 014930 223 AFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIHELESEIRIQNDET 294 (415)
Q Consensus 223 ~~~~~~~l~~g~vY~~G~~~~~~~~~g~~g~~vLYvGDhi~~Di~~~k~~GwrT~lVvpEL~~Ei~~~~~~~ 294 (415)
+-.+..+++.++.++++|++|||++|+||++++++|++|++|.|-...+. |.++-
T Consensus 96 ---------------~~~fr~Al~~m~l~~~~vvmVGDqL~TDVlggnr~G~~tIlV~Pl~~~d~--~~t~~ 150 (175)
T COG2179 96 ---------------GRAFRRALKEMNLPPEEVVMVGDQLFTDVLGGNRAGMRTILVEPLVAPDG--WITKI 150 (175)
T ss_pred ---------------HHHHHHHHHHcCCChhHEEEEcchhhhhhhcccccCcEEEEEEEeccccc--hhhhh
Confidence 22356899999999999999999999999999999999999999877663 55543
No 6
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=99.37 E-value=9.6e-13 Score=123.23 Aligned_cols=103 Identities=25% Similarity=0.299 Sum_probs=89.1
Q ss_pred cccccchhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhhhccCCCCCCCccCCccEEEEcC----CCCCCCCCCCCce
Q 014930 138 RYLVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQA----NKPDFYTSDHPFR 213 (415)
Q Consensus 138 kYi~k~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~~~FD~vi~~a----~KP~FF~~~~~fr 213 (415)
.++...|++.++|+.|+++|++++|+||++...+...++.+ +|.++||.|++.. .||
T Consensus 91 ~~~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~l~~~---------~l~~~f~~i~~~~~~~~~KP---------- 151 (221)
T TIGR02253 91 AYLRVYPGVRDTLMELRESGYRLGIITDGLPVKQWEKLERL---------GVRDFFDAVITSEEEGVEKP---------- 151 (221)
T ss_pred HhCCCCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHhC---------ChHHhccEEEEeccCCCCCC----------
Confidence 45667899999999999999999999999999998888876 6889999988764 567
Q ss_pred eeccCcccccccccccccCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCceEEEEecc
Q 014930 214 CYDTEKDTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIHE 282 (415)
Q Consensus 214 ~vd~~~~~~~~~~~~~l~~g~vY~~G~~~~~~~~~g~~g~~vLYvGDhi~~Di~~~k~~GwrT~lVvpE 282 (415)
++ -.+..+++.+|+++++|+||||+...||.+|+++||+|++|.+-
T Consensus 152 --~~---------------------~~~~~~~~~~~~~~~~~~~igDs~~~di~~A~~aG~~~i~~~~~ 197 (221)
T TIGR02253 152 --HP---------------------KIFYAALKRLGVKPEEAVMVGDRLDKDIKGAKNLGMKTVWINQG 197 (221)
T ss_pred --CH---------------------HHHHHHHHHcCCChhhEEEECCChHHHHHHHHHCCCEEEEECCC
Confidence 33 23467889999999999999999988999999999999999764
No 7
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=99.32 E-value=3.4e-12 Score=112.84 Aligned_cols=101 Identities=22% Similarity=0.346 Sum_probs=89.2
Q ss_pred cccccccchhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhhhccCCCCCCCccCCccEEEEcC----CCCCCCCCCCC
Q 014930 136 PNRYLVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQA----NKPDFYTSDHP 211 (415)
Q Consensus 136 p~kYi~k~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~~~FD~vi~~a----~KP~FF~~~~~ 211 (415)
....+...|++.++|++|+++|.++.++||++...+...++.+ +|.++||.|++.. .||
T Consensus 72 ~~~~~~~~~~~~~~L~~l~~~~~~~~i~Sn~~~~~~~~~l~~~---------~~~~~f~~i~~~~~~~~~Kp-------- 134 (176)
T PF13419_consen 72 LESKLQPYPGVRELLERLKAKGIPLVIVSNGSRERIERVLERL---------GLDDYFDEIISSDDVGSRKP-------- 134 (176)
T ss_dssp HHGGEEESTTHHHHHHHHHHTTSEEEEEESSEHHHHHHHHHHT---------THGGGCSEEEEGGGSSSSTT--------
T ss_pred hhhccchhhhhhhhhhhcccccceeEEeecCCccccccccccc---------ccccccccccccchhhhhhh--------
Confidence 3467788999999999999999999999999999999999987 6779999998876 556
Q ss_pred ceeeccCcccccccccccccCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCceEEEE
Q 014930 212 FRCYDTEKDTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAI 279 (415)
Q Consensus 212 fr~vd~~~~~~~~~~~~~l~~g~vY~~G~~~~~~~~~g~~g~~vLYvGDhi~~Di~~~k~~GwrT~lV 279 (415)
++ ..+..+++.+|+++++|++|||+. .||.+|+++||.|+.|
T Consensus 135 ----~~---------------------~~~~~~~~~~~~~p~~~~~vgD~~-~d~~~A~~~G~~~i~v 176 (176)
T PF13419_consen 135 ----DP---------------------DAYRRALEKLGIPPEEILFVGDSP-SDVEAAKEAGIKTIWV 176 (176)
T ss_dssp ----SH---------------------HHHHHHHHHHTSSGGGEEEEESSH-HHHHHHHHTTSEEEEE
T ss_pred ----HH---------------------HHHHHHHHHcCCCcceEEEEeCCH-HHHHHHHHcCCeEEeC
Confidence 32 345688889999999999999999 9999999999999986
No 8
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=99.28 E-value=9.5e-12 Score=118.42 Aligned_cols=101 Identities=20% Similarity=0.210 Sum_probs=87.1
Q ss_pred ccccchhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhhhccCCCCCCCccCCccEEEEcC----CCCCCCCCCCCcee
Q 014930 139 YLVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQA----NKPDFYTSDHPFRC 214 (415)
Q Consensus 139 Yi~k~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~~~FD~vi~~a----~KP~FF~~~~~fr~ 214 (415)
++..-|++.++|+.|++.|+++.++||++...+..+++.+ +|.++||+|+++. .||
T Consensus 93 ~~~~~pg~~~~L~~L~~~g~~l~i~Tn~~~~~~~~~l~~~---------~l~~~f~~i~~~~~~~~~KP----------- 152 (229)
T PRK13226 93 QSQLFDGVEGMLQRLECAGCVWGIVTNKPEYLARLILPQL---------GWEQRCAVLIGGDTLAERKP----------- 152 (229)
T ss_pred cCeeCCCHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHc---------CchhcccEEEecCcCCCCCC-----------
Confidence 4556799999999999999999999999999998888876 6889999988754 466
Q ss_pred eccCcccccccccccccCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCceEEEEecc
Q 014930 215 YDTEKDTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIHE 282 (415)
Q Consensus 215 vd~~~~~~~~~~~~~l~~g~vY~~G~~~~~~~~~g~~g~~vLYvGDhi~~Di~~~k~~GwrT~lVvpE 282 (415)
+| ..+..+++.+|+++++|+||||+. .||.+|+++||+|++|.+-
T Consensus 153 -~p---------------------~~~~~~~~~l~~~p~~~l~IGDs~-~Di~aA~~aG~~~i~v~~g 197 (229)
T PRK13226 153 -HP---------------------LPLLVAAERIGVAPTDCVYVGDDE-RDILAARAAGMPSVAALWG 197 (229)
T ss_pred -CH---------------------HHHHHHHHHhCCChhhEEEeCCCH-HHHHHHHHCCCcEEEEeec
Confidence 43 224578889999999999999997 9999999999999999764
No 9
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=99.28 E-value=7.7e-12 Score=115.61 Aligned_cols=99 Identities=22% Similarity=0.314 Sum_probs=86.4
Q ss_pred ccchhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhhhccCCCCCCCccCCccEEEEcC----CCCCCCCCCCCceeec
Q 014930 141 VKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQA----NKPDFYTSDHPFRCYD 216 (415)
Q Consensus 141 ~k~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~~~FD~vi~~a----~KP~FF~~~~~fr~vd 216 (415)
...|++.++|++|+++|.+++++||++...+...++.+ ++.++||.|++.. .|| +
T Consensus 92 ~~~~~~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~---------gl~~~fd~i~~s~~~~~~KP------------~ 150 (198)
T TIGR01428 92 PPHPDVPAGLRALKERGYRLAILSNGSPAMLKSLVKHA---------GLDDPFDAVLSADAVRAYKP------------A 150 (198)
T ss_pred CCCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHC---------CChhhhheeEehhhcCCCCC------------C
Confidence 35689999999999999999999999999999988876 5788999988744 677 3
Q ss_pred cCcccccccccccccCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCceEEEEecc
Q 014930 217 TEKDTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIHE 282 (415)
Q Consensus 217 ~~~~~~~~~~~~~l~~g~vY~~G~~~~~~~~~g~~g~~vLYvGDhi~~Di~~~k~~GwrT~lVvpE 282 (415)
+ ..+..+++.+|+++++|++|||+. .||.+|+++||+|++|.+.
T Consensus 151 ~---------------------~~~~~~~~~~~~~p~~~~~vgD~~-~Di~~A~~~G~~~i~v~r~ 194 (198)
T TIGR01428 151 P---------------------QVYQLALEALGVPPDEVLFVASNP-WDLGGAKKFGFKTAWVNRP 194 (198)
T ss_pred H---------------------HHHHHHHHHhCCChhhEEEEeCCH-HHHHHHHHCCCcEEEecCC
Confidence 3 235678899999999999999999 9999999999999999764
No 10
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=99.27 E-value=1.1e-11 Score=119.63 Aligned_cols=100 Identities=19% Similarity=0.273 Sum_probs=88.0
Q ss_pred ccccchhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhhhccCCCCCCCccCCccEEEEcC----CCCCCCCCCCCcee
Q 014930 139 YLVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQA----NKPDFYTSDHPFRC 214 (415)
Q Consensus 139 Yi~k~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~~~FD~vi~~a----~KP~FF~~~~~fr~ 214 (415)
.+..-|++.++|+.|++.|.++.|+||++..++...++.+ +|.++||.|++.. .||
T Consensus 106 ~~~l~pgv~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~---------gl~~~Fd~iv~~~~~~~~KP----------- 165 (248)
T PLN02770 106 QLKPLNGLYKLKKWIEDRGLKRAAVTNAPRENAELMISLL---------GLSDFFQAVIIGSECEHAKP----------- 165 (248)
T ss_pred cCCcCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHc---------CChhhCcEEEecCcCCCCCC-----------
Confidence 3456789999999999999999999999999999999987 6889999998876 477
Q ss_pred eccCcccccccccccccCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCceEEEEec
Q 014930 215 YDTEKDTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIH 281 (415)
Q Consensus 215 vd~~~~~~~~~~~~~l~~g~vY~~G~~~~~~~~~g~~g~~vLYvGDhi~~Di~~~k~~GwrT~lVvp 281 (415)
+| -.+..+++.+|+++++++||||.. .||.+|+++|++|++|.+
T Consensus 166 -~p---------------------~~~~~a~~~~~~~~~~~l~vgDs~-~Di~aA~~aGi~~i~v~~ 209 (248)
T PLN02770 166 -HP---------------------DPYLKALEVLKVSKDHTFVFEDSV-SGIKAGVAAGMPVVGLTT 209 (248)
T ss_pred -Ch---------------------HHHHHHHHHhCCChhHEEEEcCCH-HHHHHHHHCCCEEEEEeC
Confidence 44 124578889999999999999999 999999999999999975
No 11
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=99.26 E-value=2.3e-11 Score=109.82 Aligned_cols=96 Identities=31% Similarity=0.385 Sum_probs=80.5
Q ss_pred cccchhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhhhccCCCCCCCccCCccEEEEc----CCCCCCCCCCCCceee
Q 014930 140 LVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQ----ANKPDFYTSDHPFRCY 215 (415)
Q Consensus 140 i~k~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~~~FD~vi~~----a~KP~FF~~~~~fr~v 215 (415)
+...|++.++|+.|++.|++++++||++... ..+...+ ++.++||.|+++ ..||
T Consensus 84 ~~~~~g~~~~l~~l~~~g~~~~i~Tn~~~~~-~~~~~~~---------~l~~~f~~i~~~~~~~~~KP------------ 141 (183)
T TIGR01509 84 LKPLPGVEPLLEALRARGKKLALLTNSPRDH-AVLVQEL---------GLRDLFDVVIFSGDVGRGKP------------ 141 (183)
T ss_pred CccCcCHHHHHHHHHHCCCeEEEEeCCchHH-HHHHHhc---------CCHHHCCEEEEcCCCCCCCC------------
Confidence 5677999999999999999999999999988 5544333 567889998874 3677
Q ss_pred ccCcccccccccccccCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCceEEEE
Q 014930 216 DTEKDTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAI 279 (415)
Q Consensus 216 d~~~~~~~~~~~~~l~~g~vY~~G~~~~~~~~~g~~g~~vLYvGDhi~~Di~~~k~~GwrT~lV 279 (415)
++ ..+..+++.+|+++++++||||+. .||.+|+++||+|++|
T Consensus 142 ~~---------------------~~~~~~~~~~~~~~~~~~~vgD~~-~di~aA~~~G~~~i~v 183 (183)
T TIGR01509 142 DP---------------------DIYLLALKKLGLKPEECLFVDDSP-AGIEAAKAAGMHTVLV 183 (183)
T ss_pred CH---------------------HHHHHHHHHcCCCcceEEEEcCCH-HHHHHHHHcCCEEEeC
Confidence 33 335678889999999999999999 7999999999999986
No 12
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=99.25 E-value=1.4e-11 Score=120.17 Aligned_cols=99 Identities=16% Similarity=0.261 Sum_probs=87.0
Q ss_pred cccchhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhhhccCCCCCCCccCCccEEEEcC----CCCCCCCCCCCceee
Q 014930 140 LVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQA----NKPDFYTSDHPFRCY 215 (415)
Q Consensus 140 i~k~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~~~FD~vi~~a----~KP~FF~~~~~fr~v 215 (415)
+..-|++.++|+.|+++|++++|+||++..++..++..+ +|.+|||.|++.. .||
T Consensus 108 ~~l~pg~~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~---------gl~~~Fd~ii~~~d~~~~KP------------ 166 (260)
T PLN03243 108 YRLRPGSREFVQALKKHEIPIAVASTRPRRYLERAIEAV---------GMEGFFSVVLAAEDVYRGKP------------ 166 (260)
T ss_pred cccCCCHHHHHHHHHHCCCEEEEEeCcCHHHHHHHHHHc---------CCHhhCcEEEecccCCCCCC------------
Confidence 344689999999999999999999999999999999987 6999999999865 577
Q ss_pred ccCcccccccccccccCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCceEEEEec
Q 014930 216 DTEKDTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIH 281 (415)
Q Consensus 216 d~~~~~~~~~~~~~l~~g~vY~~G~~~~~~~~~g~~g~~vLYvGDhi~~Di~~~k~~GwrT~lVvp 281 (415)
+| ..+..+++.+|+++++|+||||.. .||.+|+++||++++|..
T Consensus 167 ~P---------------------e~~~~a~~~l~~~p~~~l~IgDs~-~Di~aA~~aG~~~i~v~g 210 (260)
T PLN03243 167 DP---------------------EMFMYAAERLGFIPERCIVFGNSN-SSVEAAHDGCMKCVAVAG 210 (260)
T ss_pred CH---------------------HHHHHHHHHhCCChHHeEEEcCCH-HHHHHHHHcCCEEEEEec
Confidence 43 234578899999999999999998 999999999999999863
No 13
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=99.24 E-value=2.3e-11 Score=113.07 Aligned_cols=102 Identities=22% Similarity=0.257 Sum_probs=88.4
Q ss_pred ccccccchhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhhhccCCCCCCCccCCccEEEEcC----CCCCCCCCCCCc
Q 014930 137 NRYLVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQA----NKPDFYTSDHPF 212 (415)
Q Consensus 137 ~kYi~k~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~~~FD~vi~~a----~KP~FF~~~~~f 212 (415)
.+.+...|++.++|+.|+++|.++.|+||++...+..+++.+ +|.++||.|++.. .||
T Consensus 81 ~~~~~~~~g~~~~L~~l~~~g~~~~i~S~~~~~~~~~~l~~~---------~l~~~f~~~~~~~~~~~~Kp--------- 142 (213)
T TIGR01449 81 GELTSVFPGVEATLGALRAKGLRLGLVTNKPTPLARPLLELL---------GLAKYFSVLIGGDSLAQRKP--------- 142 (213)
T ss_pred cccCccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHc---------CcHhhCcEEEecCCCCCCCC---------
Confidence 345566799999999999999999999999999999999987 7889999888764 466
Q ss_pred eeeccCcccccccccccccCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCceEEEEec
Q 014930 213 RCYDTEKDTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIH 281 (415)
Q Consensus 213 r~vd~~~~~~~~~~~~~l~~g~vY~~G~~~~~~~~~g~~g~~vLYvGDhi~~Di~~~k~~GwrT~lVvp 281 (415)
+| -.+..+++.+|+++++++||||+. .|+.+++++|+.+++|.+
T Consensus 143 ---~p---------------------~~~~~~~~~~~~~~~~~~~igDs~-~d~~aa~~aG~~~i~v~~ 186 (213)
T TIGR01449 143 ---HP---------------------DPLLLAAERLGVAPQQMVYVGDSR-VDIQAARAAGCPSVLLTY 186 (213)
T ss_pred ---Ch---------------------HHHHHHHHHcCCChhHeEEeCCCH-HHHHHHHHCCCeEEEEcc
Confidence 33 234688999999999999999997 999999999999999965
No 14
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=99.23 E-value=2.1e-11 Score=113.47 Aligned_cols=102 Identities=21% Similarity=0.212 Sum_probs=88.0
Q ss_pred ccccchhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhhhccCCCCCCCccCCccEEEEcC----CCCCCCCCCCCcee
Q 014930 139 YLVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQA----NKPDFYTSDHPFRC 214 (415)
Q Consensus 139 Yi~k~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~~~FD~vi~~a----~KP~FF~~~~~fr~ 214 (415)
.+..-|++.++|++|+++|.+++++||+...++..+++.+ +|.++||.|++.. .||
T Consensus 73 ~~~~~~g~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~---------~l~~~f~~i~~~~~~~~~KP----------- 132 (205)
T TIGR01454 73 EVEVFPGVPELLAELRADGVGTAIATGKSGPRARSLLEAL---------GLLPLFDHVIGSDEVPRPKP----------- 132 (205)
T ss_pred ccccCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHc---------CChhheeeEEecCcCCCCCC-----------
Confidence 4566789999999999999999999999999999998877 6889999888643 566
Q ss_pred eccCcccccccccccccCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCceEEEEeccc
Q 014930 215 YDTEKDTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIHEL 283 (415)
Q Consensus 215 vd~~~~~~~~~~~~~l~~g~vY~~G~~~~~~~~~g~~g~~vLYvGDhi~~Di~~~k~~GwrT~lVvpEL 283 (415)
++ ..+..+++.+|+++++|+||||+. .||.+|+++|+++++|.+--
T Consensus 133 -~~---------------------~~~~~~~~~~~~~~~~~l~igD~~-~Di~aA~~~Gi~~i~~~~g~ 178 (205)
T TIGR01454 133 -AP---------------------DIVREALRLLDVPPEDAVMVGDAV-TDLASARAAGTATVAALWGE 178 (205)
T ss_pred -Ch---------------------HHHHHHHHHcCCChhheEEEcCCH-HHHHHHHHcCCeEEEEEecC
Confidence 32 335678889999999999999998 99999999999999998643
No 15
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=99.22 E-value=2.7e-11 Score=116.51 Aligned_cols=100 Identities=16% Similarity=0.095 Sum_probs=85.1
Q ss_pred cccchhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhhhccCCCCCCCccCCc-cEEEEcC----CCCCCCCCCCCcee
Q 014930 140 LVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELF-DVVIAQA----NKPDFYTSDHPFRC 214 (415)
Q Consensus 140 i~k~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~~~F-D~vi~~a----~KP~FF~~~~~fr~ 214 (415)
+..-|++.++|+.|+++|.++.|+||++...++.+++.+ ++.++| |.|++.. .||
T Consensus 98 ~~~~pg~~e~L~~L~~~g~~l~IvT~~~~~~~~~~l~~~---------gl~~~f~d~ii~~~~~~~~KP----------- 157 (253)
T TIGR01422 98 SSPIPGVIEVIAYLRARGIKIGSTTGYTREMMDVVAPEA---------ALQGYRPDYNVTTDDVPAGRP----------- 157 (253)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHHH---------HhcCCCCceEEccccCCCCCC-----------
Confidence 456789999999999999999999999999999999887 466775 8887754 567
Q ss_pred eccCcccccccccccccCCeeeccCcHHHHHHHhCCC-CCcEEEEcccccccccccccCCceEEEEecc
Q 014930 215 YDTEKDTLAFTKVDAFIPNKIYYHGCLKSFLQITKWN-GPEVIYFGDHLFSDLRGPSKAGWRTAAIIHE 282 (415)
Q Consensus 215 vd~~~~~~~~~~~~~l~~g~vY~~G~~~~~~~~~g~~-g~~vLYvGDhi~~Di~~~k~~GwrT~lVvpE 282 (415)
+|+ .+..+++.+|+. +++|+||||+. .||.+|+++|++|++|.+-
T Consensus 158 -~p~---------------------~~~~a~~~l~~~~~~~~l~IGDs~-~Di~aA~~aGi~~i~v~~g 203 (253)
T TIGR01422 158 -APW---------------------MALKNAIELGVYDVAACVKVGDTV-PDIEEGRNAGMWTVGLILS 203 (253)
T ss_pred -CHH---------------------HHHHHHHHcCCCCchheEEECCcH-HHHHHHHHCCCeEEEEecC
Confidence 441 235788899985 89999999999 9999999999999999763
No 16
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=99.21 E-value=3.3e-11 Score=104.61 Aligned_cols=101 Identities=23% Similarity=0.287 Sum_probs=78.9
Q ss_pred ccccccchhHHHHHHHHHHcCCeEEEEeCCC--------hhhhHHHHHhhhccCCCCCCCccCCccEEEEc--CCCCCCC
Q 014930 137 NRYLVKNGQVLQFVKMLREKGKKLFLLTNSP--------YYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQ--ANKPDFY 206 (415)
Q Consensus 137 ~kYi~k~p~l~~~L~~Lr~~GkklfLlTNS~--------~~yt~~vm~~l~~~~~~~g~~W~~~FD~vi~~--a~KP~FF 206 (415)
......-|++.++|+.|+++|++++|+||++ .+.+..+++.+ +.. |+.+++. ..||
T Consensus 21 ~~~~~~~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~~l~~~-------~l~----~~~~~~~~~~~KP--- 86 (132)
T TIGR01662 21 EDERILYPEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGRVARRLEEL-------GVP----IDVLYACPHCRKP--- 86 (132)
T ss_pred HHHheeCCCHHHHHHHHHHCCCEEEEEECCccccccHHHHHHHHHHHHHC-------CCC----EEEEEECCCCCCC---
Confidence 3334566899999999999999999999999 77788888776 332 3333332 3566
Q ss_pred CCCCCceeeccCcccccccccccccCCeeeccCcHHHHHHHh-CCCCCcEEEEcccccccccccccCCceEEEEec
Q 014930 207 TSDHPFRCYDTEKDTLAFTKVDAFIPNKIYYHGCLKSFLQIT-KWNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIH 281 (415)
Q Consensus 207 ~~~~~fr~vd~~~~~~~~~~~~~l~~g~vY~~G~~~~~~~~~-g~~g~~vLYvGDhi~~Di~~~k~~GwrT~lVvp 281 (415)
++ ..+..+++.+ ++++++++||||+...||.+|+++||+|++|.|
T Consensus 87 ---------~~---------------------~~~~~~~~~~~~~~~~~~v~IGD~~~~Di~~A~~~Gi~~i~~~~ 132 (132)
T TIGR01662 87 ---------KP---------------------GMFLEALKRFNEIDPEESVYVGDQDLTDLQAAKRAGLAFILVAP 132 (132)
T ss_pred ---------Ch---------------------HHHHHHHHHcCCCChhheEEEcCCCcccHHHHHHCCCeEEEeeC
Confidence 22 3456889999 599999999999645999999999999999976
No 17
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=99.21 E-value=1.4e-10 Score=110.01 Aligned_cols=102 Identities=25% Similarity=0.307 Sum_probs=88.8
Q ss_pred ccccchhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhhhccCCCCCCCccCCccEEEEcC----CCCCCCCCCCCcee
Q 014930 139 YLVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQA----NKPDFYTSDHPFRC 214 (415)
Q Consensus 139 Yi~k~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~~~FD~vi~~a----~KP~FF~~~~~fr~ 214 (415)
....-|++.++|..|+++|.+++++||++...+..+++.+ ++.++|++|++.. .||
T Consensus 87 ~~~~~~gv~e~L~~L~~~g~~l~i~T~k~~~~~~~~l~~~---------gl~~~F~~i~g~~~~~~~KP----------- 146 (220)
T COG0546 87 ESRLFPGVKELLAALKSAGYKLGIVTNKPERELDILLKAL---------GLADYFDVIVGGDDVPPPKP----------- 146 (220)
T ss_pred cCccCCCHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHh---------CCccccceEEcCCCCCCCCc-----------
Confidence 3456799999999999999999999999999999999986 6889999999933 777
Q ss_pred eccCcccccccccccccCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCceEEEEeccc
Q 014930 215 YDTEKDTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIHEL 283 (415)
Q Consensus 215 vd~~~~~~~~~~~~~l~~g~vY~~G~~~~~~~~~g~~g~~vLYvGDhi~~Di~~~k~~GwrT~lVvpEL 283 (415)
||. .+..+++.+|..+++++||||.. .||.+|+++|..+++|.+--
T Consensus 147 -~P~---------------------~l~~~~~~~~~~~~~~l~VGDs~-~Di~aA~~Ag~~~v~v~~g~ 192 (220)
T COG0546 147 -DPE---------------------PLLLLLEKLGLDPEEALMVGDSL-NDILAAKAAGVPAVGVTWGY 192 (220)
T ss_pred -CHH---------------------HHHHHHHHhCCChhheEEECCCH-HHHHHHHHcCCCEEEEECCC
Confidence 552 23477889999977999999999 99999999999999998853
No 18
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=99.20 E-value=4.1e-11 Score=112.20 Aligned_cols=100 Identities=27% Similarity=0.374 Sum_probs=87.3
Q ss_pred cccchhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhhhccCCCCCCCccCCccEEEEcC----CCCCCCCCCCCceee
Q 014930 140 LVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQA----NKPDFYTSDHPFRCY 215 (415)
Q Consensus 140 i~k~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~~~FD~vi~~a----~KP~FF~~~~~fr~v 215 (415)
+..-|++.++|+.|+++|.+++++||+....+..+++.+ +|.++||.|++.. .||
T Consensus 81 ~~~~~g~~~~l~~L~~~g~~~~i~S~~~~~~~~~~l~~~---------gl~~~f~~i~~~~~~~~~Kp------------ 139 (214)
T PRK13288 81 VTEYETVYETLKTLKKQGYKLGIVTTKMRDTVEMGLKLT---------GLDEFFDVVITLDDVEHAKP------------ 139 (214)
T ss_pred cccCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHc---------CChhceeEEEecCcCCCCCC------------
Confidence 445699999999999999999999999999999999876 6889999988753 566
Q ss_pred ccCcccccccccccccCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCceEEEEecc
Q 014930 216 DTEKDTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIHE 282 (415)
Q Consensus 216 d~~~~~~~~~~~~~l~~g~vY~~G~~~~~~~~~g~~g~~vLYvGDhi~~Di~~~k~~GwrT~lVvpE 282 (415)
+| ..+..+++.+|.++++++||||+. .||.+|+++|+++++|.+.
T Consensus 140 ~p---------------------~~~~~~~~~~~~~~~~~~~iGDs~-~Di~aa~~aG~~~i~v~~g 184 (214)
T PRK13288 140 DP---------------------EPVLKALELLGAKPEEALMVGDNH-HDILAGKNAGTKTAGVAWT 184 (214)
T ss_pred Cc---------------------HHHHHHHHHcCCCHHHEEEECCCH-HHHHHHHHCCCeEEEEcCC
Confidence 33 235678888999999999999998 9999999999999999875
No 19
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=99.20 E-value=2.6e-11 Score=115.45 Aligned_cols=99 Identities=17% Similarity=0.235 Sum_probs=83.9
Q ss_pred cccchhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhhhccCCCCCCCccCCccEEEEcC----CCCCCCCCCCCceee
Q 014930 140 LVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQA----NKPDFYTSDHPFRCY 215 (415)
Q Consensus 140 i~k~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~~~FD~vi~~a----~KP~FF~~~~~fr~v 215 (415)
+..-|++.++|+.||++|.++.|+||++...+...++.+ +|.++||.|++.. .||
T Consensus 92 ~~~~~g~~e~L~~Lk~~g~~~~i~Tn~~~~~~~~~l~~~---------~l~~~fd~iv~s~~~~~~KP------------ 150 (224)
T PRK14988 92 AVLREDTVPFLEALKASGKRRILLTNAHPHNLAVKLEHT---------GLDAHLDLLLSTHTFGYPKE------------ 150 (224)
T ss_pred CCcCCCHHHHHHHHHhCCCeEEEEeCcCHHHHHHHHHHC---------CcHHHCCEEEEeeeCCCCCC------------
Confidence 455689999999999999999999999999999988876 6889999988754 677
Q ss_pred ccCcccccccccccccCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCceEEEEec
Q 014930 216 DTEKDTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIH 281 (415)
Q Consensus 216 d~~~~~~~~~~~~~l~~g~vY~~G~~~~~~~~~g~~g~~vLYvGDhi~~Di~~~k~~GwrT~lVvp 281 (415)
+| -.+..+++.+|+++++|+||||.. .||.+|+++||+|+..++
T Consensus 151 ~p---------------------~~~~~~~~~~~~~p~~~l~igDs~-~di~aA~~aG~~~~~~v~ 194 (224)
T PRK14988 151 DQ---------------------RLWQAVAEHTGLKAERTLFIDDSE-PILDAAAQFGIRYCLGVT 194 (224)
T ss_pred CH---------------------HHHHHHHHHcCCChHHEEEEcCCH-HHHHHHHHcCCeEEEEEe
Confidence 43 124578899999999999999999 899999999999755443
No 20
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=99.19 E-value=2.8e-11 Score=112.47 Aligned_cols=99 Identities=16% Similarity=0.297 Sum_probs=81.9
Q ss_pred ccchhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhhhccCCCCCCCccCCccEEEEcC----CCCCCCCCCCCceeec
Q 014930 141 VKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQA----NKPDFYTSDHPFRCYD 216 (415)
Q Consensus 141 ~k~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~~~FD~vi~~a----~KP~FF~~~~~fr~vd 216 (415)
...|++.++|+.||++|++++|+||++...+...+... ..|.++||.|++.. +|| +
T Consensus 84 ~~~~g~~e~L~~l~~~g~~~~i~Sn~~~~~~~~~~~~~--------~~l~~~fd~v~~s~~~~~~KP------------~ 143 (199)
T PRK09456 84 ALRPEVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEEY--------PEVRAAADHIYLSQDLGMRKP------------E 143 (199)
T ss_pred ccCHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHhhc--------hhHHHhcCEEEEecccCCCCC------------C
Confidence 35789999999999999999999999988766544332 25788999988865 678 4
Q ss_pred cCcccccccccccccCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCceEEEEec
Q 014930 217 TEKDTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIH 281 (415)
Q Consensus 217 ~~~~~~~~~~~~~l~~g~vY~~G~~~~~~~~~g~~g~~vLYvGDhi~~Di~~~k~~GwrT~lVvp 281 (415)
| ..+..+++.+|+++++++||||+. .||.+|+++||+|+.|..
T Consensus 144 p---------------------~~~~~~~~~~~~~p~~~l~vgD~~-~di~aA~~aG~~~i~~~~ 186 (199)
T PRK09456 144 A---------------------RIYQHVLQAEGFSAADAVFFDDNA-DNIEAANALGITSILVTD 186 (199)
T ss_pred H---------------------HHHHHHHHHcCCChhHeEEeCCCH-HHHHHHHHcCCEEEEecC
Confidence 3 224578899999999999999998 789999999999999865
No 21
>PRK09449 dUMP phosphatase; Provisional
Probab=99.18 E-value=4.6e-11 Score=112.41 Aligned_cols=99 Identities=22% Similarity=0.276 Sum_probs=84.2
Q ss_pred cccchhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhhhccCCCCCCCccCCccEEEEcC----CCCCCCCCCCCceee
Q 014930 140 LVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQA----NKPDFYTSDHPFRCY 215 (415)
Q Consensus 140 i~k~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~~~FD~vi~~a----~KP~FF~~~~~fr~v 215 (415)
+..-|++.++|+.|+ +|.++.++||+..+.+...++.+ ++.++||.|++.. .||
T Consensus 94 ~~~~~g~~~~L~~L~-~~~~~~i~Tn~~~~~~~~~l~~~---------~l~~~fd~v~~~~~~~~~KP------------ 151 (224)
T PRK09449 94 CTPLPGAVELLNALR-GKVKMGIITNGFTELQQVRLERT---------GLRDYFDLLVISEQVGVAKP------------ 151 (224)
T ss_pred CccCccHHHHHHHHH-hCCeEEEEeCCcHHHHHHHHHhC---------ChHHHcCEEEEECccCCCCC------------
Confidence 445689999999999 68999999999999999988876 6778999998765 577
Q ss_pred ccCcccccccccccccCCeeeccCcHHHHHHHhCCCC-CcEEEEcccccccccccccCCceEEEEec
Q 014930 216 DTEKDTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNG-PEVIYFGDHLFSDLRGPSKAGWRTAAIIH 281 (415)
Q Consensus 216 d~~~~~~~~~~~~~l~~g~vY~~G~~~~~~~~~g~~g-~~vLYvGDhi~~Di~~~k~~GwrT~lVvp 281 (415)
+| ..+..+++.+|+.+ ++|+||||+...||.+|+++||+|++|.+
T Consensus 152 ~p---------------------~~~~~~~~~~~~~~~~~~~~vgD~~~~Di~~A~~aG~~~i~~~~ 197 (224)
T PRK09449 152 DV---------------------AIFDYALEQMGNPDRSRVLMVGDNLHSDILGGINAGIDTCWLNA 197 (224)
T ss_pred CH---------------------HHHHHHHHHcCCCCcccEEEEcCCcHHHHHHHHHCCCcEEEECC
Confidence 43 23457888999865 68999999997899999999999999974
No 22
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=99.15 E-value=5.1e-11 Score=110.39 Aligned_cols=95 Identities=27% Similarity=0.421 Sum_probs=78.7
Q ss_pred ccchhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhhhccCCCCCCCccCCccEEEEcC----CCCCCCCCCCCceeec
Q 014930 141 VKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQA----NKPDFYTSDHPFRCYD 216 (415)
Q Consensus 141 ~k~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~~~FD~vi~~a----~KP~FF~~~~~fr~vd 216 (415)
...|++.++|+.|+++|+++.|+||++... ...+..+ ++.++||.|++.. .|| +
T Consensus 105 ~~~~g~~~~l~~L~~~g~~~~i~Sn~~~~~-~~~l~~~---------~l~~~fd~i~~s~~~~~~KP------------~ 162 (203)
T TIGR02252 105 QVYPDAIKLLKDLRERGLILGVISNFDSRL-RGLLEAL---------GLLEYFDFVVTSYEVGAEKP------------D 162 (203)
T ss_pred eeCcCHHHHHHHHHHCCCEEEEEeCCchhH-HHHHHHC---------CcHHhcceEEeecccCCCCC------------C
Confidence 456899999999999999999999998754 5555554 6788999988754 577 3
Q ss_pred cCcccccccccccccCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCceEEE
Q 014930 217 TEKDTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAA 278 (415)
Q Consensus 217 ~~~~~~~~~~~~~l~~g~vY~~G~~~~~~~~~g~~g~~vLYvGDhi~~Di~~~k~~GwrT~l 278 (415)
+ ..+..+++.+|+++++|+||||+...||.+|+++||+|++
T Consensus 163 ~---------------------~~~~~~~~~~~~~~~~~~~IgD~~~~Di~~A~~aG~~~i~ 203 (203)
T TIGR02252 163 P---------------------KIFQEALERAGISPEEALHIGDSLRNDYQGARAAGWRALL 203 (203)
T ss_pred H---------------------HHHHHHHHHcCCChhHEEEECCCchHHHHHHHHcCCeeeC
Confidence 3 2346788899999999999999988999999999999974
No 23
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=99.15 E-value=8.1e-11 Score=110.41 Aligned_cols=100 Identities=19% Similarity=0.231 Sum_probs=85.7
Q ss_pred ccchhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhhhccCCCCCCCcc--CCccEEEEcC----CCCCCCCCCCCcee
Q 014930 141 VKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWR--ELFDVVIAQA----NKPDFYTSDHPFRC 214 (415)
Q Consensus 141 ~k~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~--~~FD~vi~~a----~KP~FF~~~~~fr~ 214 (415)
..-|++.++|+.|+++|.++.++||+....+..++..+ +|. ++||.|++.. .||
T Consensus 87 ~l~~G~~~~L~~L~~~g~~~~ivT~~~~~~~~~~l~~~---------~l~~~~~f~~i~~~~~~~~~KP----------- 146 (220)
T TIGR03351 87 VALPGAEEAFRSLRSSGIKVALTTGFDRDTAERLLEKL---------GWTVGDDVDAVVCPSDVAAGRP----------- 146 (220)
T ss_pred ccCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHh---------hhhhhccCCEEEcCCcCCCCCC-----------
Confidence 45689999999999999999999999999999999987 465 9999999875 566
Q ss_pred eccCcccccccccccccCCeeeccCcHHHHHHHhCCC-CCcEEEEcccccccccccccCCceE-EEEeccc
Q 014930 215 YDTEKDTLAFTKVDAFIPNKIYYHGCLKSFLQITKWN-GPEVIYFGDHLFSDLRGPSKAGWRT-AAIIHEL 283 (415)
Q Consensus 215 vd~~~~~~~~~~~~~l~~g~vY~~G~~~~~~~~~g~~-g~~vLYvGDhi~~Di~~~k~~GwrT-~lVvpEL 283 (415)
+| -.+..+++.+|.+ +++|+||||+. .||.+|+++||+| ++|.+.-
T Consensus 147 -~p---------------------~~~~~a~~~~~~~~~~~~~~igD~~-~Di~aa~~aG~~~~i~~~~g~ 194 (220)
T TIGR03351 147 -AP---------------------DLILRAMELTGVQDVQSVAVAGDTP-NDLEAGINAGAGAVVGVLTGA 194 (220)
T ss_pred -CH---------------------HHHHHHHHHcCCCChhHeEEeCCCH-HHHHHHHHCCCCeEEEEecCC
Confidence 43 2245778889997 68999999998 9999999999999 8887643
No 24
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=99.14 E-value=1e-10 Score=110.34 Aligned_cols=100 Identities=14% Similarity=0.193 Sum_probs=86.9
Q ss_pred cccchhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhhhccCCCCCCCccCCccEEEEcC----CCCCCCCCCCCceee
Q 014930 140 LVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQA----NKPDFYTSDHPFRCY 215 (415)
Q Consensus 140 i~k~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~~~FD~vi~~a----~KP~FF~~~~~fr~v 215 (415)
...-|++.++|+.|+++|.+++|+||+....+..+++.+ ++..+||.|++.. .||
T Consensus 91 ~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~---------~l~~~f~~~~~~~~~~~~Kp------------ 149 (222)
T PRK10826 91 RPLLPGVREALALCKAQGLKIGLASASPLHMLEAVLTMF---------DLRDYFDALASAEKLPYSKP------------ 149 (222)
T ss_pred CCCCCCHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHhC---------cchhcccEEEEcccCCCCCC------------
Confidence 345689999999999999999999999999999999986 6889999988764 455
Q ss_pred ccCcccccccccccccCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCceEEEEecc
Q 014930 216 DTEKDTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIHE 282 (415)
Q Consensus 216 d~~~~~~~~~~~~~l~~g~vY~~G~~~~~~~~~g~~g~~vLYvGDhi~~Di~~~k~~GwrT~lVvpE 282 (415)
++ ..+..+++.+|+++++|+||||+. .||.+|+++|+++++|...
T Consensus 150 ~~---------------------~~~~~~~~~~~~~~~~~~~igDs~-~Di~aA~~aG~~~i~v~~~ 194 (222)
T PRK10826 150 HP---------------------EVYLNCAAKLGVDPLTCVALEDSF-NGMIAAKAARMRSIVVPAP 194 (222)
T ss_pred CH---------------------HHHHHHHHHcCCCHHHeEEEcCCh-hhHHHHHHcCCEEEEecCC
Confidence 33 234688999999999999999999 9999999999999998754
No 25
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=99.13 E-value=8.6e-11 Score=109.69 Aligned_cols=101 Identities=22% Similarity=0.239 Sum_probs=79.5
Q ss_pred cccchhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhhhccCCCCCCCccCCccEEEEcC----CCCCCCCCCCCceee
Q 014930 140 LVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQA----NKPDFYTSDHPFRCY 215 (415)
Q Consensus 140 i~k~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~~~FD~vi~~a----~KP~FF~~~~~fr~v 215 (415)
+...|++.++|+.||++|++++++||+............ ..++.++||.|++.. +||
T Consensus 93 ~~~~~~~~~~L~~L~~~g~~l~i~Sn~~~~~~~~~~~~~-------~~~l~~~fd~v~~s~~~~~~KP------------ 153 (211)
T TIGR02247 93 TKLRPSMMAAIKTLRAKGFKTACITNNFPTDHSAEEALL-------PGDIMALFDAVVESCLEGLRKP------------ 153 (211)
T ss_pred cccChhHHHHHHHHHHCCCeEEEEeCCCCccchhhhHhh-------hhhhHhhCCEEEEeeecCCCCC------------
Confidence 445689999999999999999999999765532221111 125778999988654 688
Q ss_pred ccCcccccccccccccCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCceEEEEec
Q 014930 216 DTEKDTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIH 281 (415)
Q Consensus 216 d~~~~~~~~~~~~~l~~g~vY~~G~~~~~~~~~g~~g~~vLYvGDhi~~Di~~~k~~GwrT~lVvp 281 (415)
+| ..+..+++.+|+++++++||||.. .||.+|+++||.|++|.+
T Consensus 154 ~p---------------------~~~~~~~~~~g~~~~~~l~i~D~~-~di~aA~~aG~~~i~v~~ 197 (211)
T TIGR02247 154 DP---------------------RIYQLMLERLGVAPEECVFLDDLG-SNLKPAAALGITTIKVSD 197 (211)
T ss_pred CH---------------------HHHHHHHHHcCCCHHHeEEEcCCH-HHHHHHHHcCCEEEEECC
Confidence 43 234578899999999999999987 999999999999999875
No 26
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=99.13 E-value=8e-11 Score=106.93 Aligned_cols=94 Identities=16% Similarity=0.165 Sum_probs=77.9
Q ss_pred ccchhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhhhccCCCCCCCccCCccEEEEcC----CCCCCCCCCCCceeec
Q 014930 141 VKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQA----NKPDFYTSDHPFRCYD 216 (415)
Q Consensus 141 ~k~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~~~FD~vi~~a----~KP~FF~~~~~fr~vd 216 (415)
...|++.++|+.|+++|.+++|+||+.. ...+++.+ +|.++||.+++.. .|| +
T Consensus 87 ~~~pg~~~~L~~L~~~g~~~~i~s~~~~--~~~~l~~~---------~l~~~f~~~~~~~~~~~~kp------------~ 143 (185)
T TIGR01990 87 DVLPGIKNLLDDLKKNNIKIALASASKN--APTVLEKL---------GLIDYFDAIVDPAEIKKGKP------------D 143 (185)
T ss_pred ccCccHHHHHHHHHHCCCeEEEEeCCcc--HHHHHHhc---------CcHhhCcEEEehhhcCCCCC------------C
Confidence 3469999999999999999999999753 45566655 6889999988754 566 3
Q ss_pred cCcccccccccccccCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCceEEEE
Q 014930 217 TEKDTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAI 279 (415)
Q Consensus 217 ~~~~~~~~~~~~~l~~g~vY~~G~~~~~~~~~g~~g~~vLYvGDhi~~Di~~~k~~GwrT~lV 279 (415)
| -.+..+++.+++++++|+||||+. .||.+|+++||+|++|
T Consensus 144 p---------------------~~~~~~~~~~~~~~~~~v~vgD~~-~di~aA~~aG~~~i~v 184 (185)
T TIGR01990 144 P---------------------EIFLAAAEGLGVSPSECIGIEDAQ-AGIEAIKAAGMFAVGV 184 (185)
T ss_pred h---------------------HHHHHHHHHcCCCHHHeEEEecCH-HHHHHHHHcCCEEEec
Confidence 3 123578889999999999999997 9999999999999987
No 27
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=99.12 E-value=1.6e-10 Score=108.26 Aligned_cols=103 Identities=26% Similarity=0.301 Sum_probs=88.6
Q ss_pred ccccchhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhhhccCCCCCCCccCCccEEEEcC----CCCCCCCCCCCcee
Q 014930 139 YLVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQA----NKPDFYTSDHPFRC 214 (415)
Q Consensus 139 Yi~k~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~~~FD~vi~~a----~KP~FF~~~~~fr~ 214 (415)
.+...|++.+.|++|++. .++.++||.....+...+..+ | ..++||.|++.. .||
T Consensus 97 ~~~~~~~~~~~L~~l~~~-~~l~ilTNg~~~~~~~~l~~~-------g--l~~~Fd~v~~s~~~g~~KP----------- 155 (229)
T COG1011 97 LLPDYPEALEALKELGKK-YKLGILTNGARPHQERKLRQL-------G--LLDYFDAVFISEDVGVAKP----------- 155 (229)
T ss_pred hCccChhHHHHHHHHHhh-ccEEEEeCCChHHHHHHHHHc-------C--ChhhhheEEEecccccCCC-----------
Confidence 355568999999999988 899999999999999988877 3 789999988766 688
Q ss_pred eccCcccccccccccccCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCceEEEEeccch
Q 014930 215 YDTEKDTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIHELE 284 (415)
Q Consensus 215 vd~~~~~~~~~~~~~l~~g~vY~~G~~~~~~~~~g~~g~~vLYvGDhi~~Di~~~k~~GwrT~lVvpEL~ 284 (415)
++ -.++.+++.+|+++++++||||+..+||.+|+++||+|+.|.+.-.
T Consensus 156 -~~---------------------~~f~~~~~~~g~~p~~~l~VgD~~~~di~gA~~~G~~~vwi~~~~~ 203 (229)
T COG1011 156 -DP---------------------EIFEYALEKLGVPPEEALFVGDSLENDILGARALGMKTVWINRGGK 203 (229)
T ss_pred -Cc---------------------HHHHHHHHHcCCCcceEEEECCChhhhhHHHHhcCcEEEEECCCCC
Confidence 43 2346889999999999999999999999999999999999887654
No 28
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=99.10 E-value=2.1e-10 Score=117.46 Aligned_cols=99 Identities=19% Similarity=0.298 Sum_probs=86.9
Q ss_pred ccchhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhhhccCCCCCCCccCCccEEEEcC----CCCCCCCCCCCceeec
Q 014930 141 VKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQA----NKPDFYTSDHPFRCYD 216 (415)
Q Consensus 141 ~k~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~~~FD~vi~~a----~KP~FF~~~~~fr~vd 216 (415)
..-|++.++|+.|+++|++++|+||++..+++.+++.+ +|.+|||.|++.. .|| +
T Consensus 216 ~l~pGa~ElL~~Lk~~GiklaIaSn~~~~~~~~~L~~l---------gL~~yFd~Iv~sddv~~~KP------------~ 274 (381)
T PLN02575 216 RLRTGSQEFVNVLMNYKIPMALVSTRPRKTLENAIGSI---------GIRGFFSVIVAAEDVYRGKP------------D 274 (381)
T ss_pred CcCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHc---------CCHHHceEEEecCcCCCCCC------------C
Confidence 34589999999999999999999999999999999987 6889999999876 467 4
Q ss_pred cCcccccccccccccCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCceEEEEecc
Q 014930 217 TEKDTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIHE 282 (415)
Q Consensus 217 ~~~~~~~~~~~~~l~~g~vY~~G~~~~~~~~~g~~g~~vLYvGDhi~~Di~~~k~~GwrT~lVvpE 282 (415)
|+ .+..+++.+|+.+++|+||||.. .||.+|+++||++++|...
T Consensus 275 Pe---------------------ifl~A~~~lgl~Peecl~IGDS~-~DIeAAk~AGm~~IgV~~~ 318 (381)
T PLN02575 275 PE---------------------MFIYAAQLLNFIPERCIVFGNSN-QTVEAAHDARMKCVAVASK 318 (381)
T ss_pred HH---------------------HHHHHHHHcCCCcccEEEEcCCH-HHHHHHHHcCCEEEEECCC
Confidence 31 23578889999999999999998 8999999999999999864
No 29
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=99.09 E-value=2.8e-10 Score=110.72 Aligned_cols=100 Identities=16% Similarity=0.086 Sum_probs=83.3
Q ss_pred cccchhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhhhccCCCCCCCccCC-ccEEEEcC----CCCCCCCCCCCcee
Q 014930 140 LVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWREL-FDVVIAQA----NKPDFYTSDHPFRC 214 (415)
Q Consensus 140 i~k~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~~~-FD~vi~~a----~KP~FF~~~~~fr~ 214 (415)
+..-|++.++|+.|+++|.+++|+||++...++.+++.+ ++.++ ||.|++.. .||
T Consensus 100 ~~~~pg~~elL~~L~~~g~~l~I~T~~~~~~~~~~l~~~---------~l~~~~~d~i~~~~~~~~~KP----------- 159 (267)
T PRK13478 100 ATPIPGVLEVIAALRARGIKIGSTTGYTREMMDVVVPLA---------AAQGYRPDHVVTTDDVPAGRP----------- 159 (267)
T ss_pred CCCCCCHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHH---------hhcCCCceEEEcCCcCCCCCC-----------
Confidence 455689999999999999999999999999999988865 34455 48877664 566
Q ss_pred eccCcccccccccccccCCeeeccCcHHHHHHHhCCC-CCcEEEEcccccccccccccCCceEEEEecc
Q 014930 215 YDTEKDTLAFTKVDAFIPNKIYYHGCLKSFLQITKWN-GPEVIYFGDHLFSDLRGPSKAGWRTAAIIHE 282 (415)
Q Consensus 215 vd~~~~~~~~~~~~~l~~g~vY~~G~~~~~~~~~g~~-g~~vLYvGDhi~~Di~~~k~~GwrT~lVvpE 282 (415)
+| ..+..+++.+|+. +++|+||||+. .||.+|+++|++|++|.+-
T Consensus 160 -~p---------------------~~~~~a~~~l~~~~~~e~l~IGDs~-~Di~aA~~aG~~~i~v~~g 205 (267)
T PRK13478 160 -YP---------------------WMALKNAIELGVYDVAACVKVDDTV-PGIEEGLNAGMWTVGVILS 205 (267)
T ss_pred -Ch---------------------HHHHHHHHHcCCCCCcceEEEcCcH-HHHHHHHHCCCEEEEEccC
Confidence 43 2245788899986 58999999999 9999999999999999874
No 30
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=99.09 E-value=1.3e-10 Score=105.57 Aligned_cols=96 Identities=20% Similarity=0.231 Sum_probs=81.3
Q ss_pred ccccchhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhhhccCCCCCCCccCCccEEEEcC----CCCCCCCCCCCcee
Q 014930 139 YLVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQA----NKPDFYTSDHPFRC 214 (415)
Q Consensus 139 Yi~k~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~~~FD~vi~~a----~KP~FF~~~~~fr~ 214 (415)
.+...|++.++|+.|+++|.++.++||+ ..++.+++.+ +|.++||.|++.. .||
T Consensus 86 ~~~~~~g~~~~l~~l~~~g~~i~i~S~~--~~~~~~l~~~---------~l~~~f~~v~~~~~~~~~kp----------- 143 (185)
T TIGR02009 86 GAEVLPGIENFLKRLKKKGIAVGLGSSS--KNADRILAKL---------GLTDYFDAIVDADEVKEGKP----------- 143 (185)
T ss_pred CCCCCcCHHHHHHHHHHcCCeEEEEeCc--hhHHHHHHHc---------ChHHHCCEeeehhhCCCCCC-----------
Confidence 3667899999999999999999999999 6688888776 6888999988754 555
Q ss_pred eccCcccccccccccccCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCceEEEE
Q 014930 215 YDTEKDTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAI 279 (415)
Q Consensus 215 vd~~~~~~~~~~~~~l~~g~vY~~G~~~~~~~~~g~~g~~vLYvGDhi~~Di~~~k~~GwrT~lV 279 (415)
++ ..+..+++.+|.++++++||||.. .||.+|+++||+|++|
T Consensus 144 -~~---------------------~~~~~~~~~~~~~~~~~v~IgD~~-~di~aA~~~G~~~i~v 185 (185)
T TIGR02009 144 -HP---------------------ETFLLAAELLGVSPNECVVFEDAL-AGVQAARAAGMFAVAV 185 (185)
T ss_pred -Ch---------------------HHHHHHHHHcCCCHHHeEEEeCcH-hhHHHHHHCCCeEeeC
Confidence 22 234578889999999999999997 9999999999999986
No 31
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=99.07 E-value=2.7e-10 Score=106.47 Aligned_cols=101 Identities=23% Similarity=0.327 Sum_probs=86.6
Q ss_pred cccchhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhhhccCCCCCCCccCCccEEEEcC----CCCCCCCCCCCceee
Q 014930 140 LVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQA----NKPDFYTSDHPFRCY 215 (415)
Q Consensus 140 i~k~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~~~FD~vi~~a----~KP~FF~~~~~fr~v 215 (415)
+...|++.++|++|++. .++.++||+..+.+..++..+ +|..+||.|++.. .||
T Consensus 96 ~~~~~g~~~~L~~l~~~-~~~~i~Sn~~~~~~~~~l~~~---------~l~~~fd~i~~~~~~~~~KP------------ 153 (224)
T TIGR02254 96 HQLLPGAFELMENLQQK-FRLYIVTNGVRETQYKRLRKS---------GLFPFFDDIFVSEDAGIQKP------------ 153 (224)
T ss_pred CeeCccHHHHHHHHHhc-CcEEEEeCCchHHHHHHHHHC---------CcHhhcCEEEEcCccCCCCC------------
Confidence 34568999999999999 999999999999999988876 6888999998865 466
Q ss_pred ccCcccccccccccccCCeeeccCcHHHHHHHh-CCCCCcEEEEcccccccccccccCCceEEEEeccc
Q 014930 216 DTEKDTLAFTKVDAFIPNKIYYHGCLKSFLQIT-KWNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIHEL 283 (415)
Q Consensus 216 d~~~~~~~~~~~~~l~~g~vY~~G~~~~~~~~~-g~~g~~vLYvGDhi~~Di~~~k~~GwrT~lVvpEL 283 (415)
++ ..+..+++.+ |+++++++||||+.-.||.+|+++||.++++.+..
T Consensus 154 ~~---------------------~~~~~~~~~~~~~~~~~~v~igD~~~~di~~A~~~G~~~i~~~~~~ 201 (224)
T TIGR02254 154 DK---------------------EIFNYALERMPKFSKEEVLMIGDSLTADIKGGQNAGLDTCWMNPDM 201 (224)
T ss_pred CH---------------------HHHHHHHHHhcCCCchheEEECCCcHHHHHHHHHCCCcEEEECCCC
Confidence 33 2345788888 99999999999998689999999999999997753
No 32
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=99.07 E-value=1.8e-10 Score=105.44 Aligned_cols=95 Identities=15% Similarity=0.247 Sum_probs=80.5
Q ss_pred ccccchhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhhhccCCCCCCCccCCccEEEEcC--------CCCCCCCCCC
Q 014930 139 YLVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQA--------NKPDFYTSDH 210 (415)
Q Consensus 139 Yi~k~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~~~FD~vi~~a--------~KP~FF~~~~ 210 (415)
.+...|++.++|++|+ .+++++||++...+...++.+ ++.++||.|++.. .||
T Consensus 82 ~~~~~~g~~~~L~~L~---~~~~i~Tn~~~~~~~~~l~~~---------gl~~~fd~i~~~~~~~~~~~~~KP------- 142 (184)
T TIGR01993 82 KLKPDPELRNLLLRLP---GRKIIFTNGDRAHARRALNRL---------GIEDCFDGIFCFDTANPDYLLPKP------- 142 (184)
T ss_pred hCCCCHHHHHHHHhCC---CCEEEEeCCCHHHHHHHHHHc---------CcHhhhCeEEEeecccCccCCCCC-------
Confidence 4556789999999997 369999999999999999887 5788999988764 277
Q ss_pred CceeeccCcccccccccccccCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCceEEEE
Q 014930 211 PFRCYDTEKDTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAI 279 (415)
Q Consensus 211 ~fr~vd~~~~~~~~~~~~~l~~g~vY~~G~~~~~~~~~g~~g~~vLYvGDhi~~Di~~~k~~GwrT~lV 279 (415)
+| ..+..+++.+|.++++++||||+. .||.+|+++|++|++|
T Consensus 143 -----~p---------------------~~~~~~~~~~~~~~~~~l~vgD~~-~di~aA~~~G~~~i~v 184 (184)
T TIGR01993 143 -----SP---------------------QAYEKALREAGVDPERAIFFDDSA-RNIAAAKALGMKTVLV 184 (184)
T ss_pred -----CH---------------------HHHHHHHHHhCCCccceEEEeCCH-HHHHHHHHcCCEEeeC
Confidence 33 234578889999999999999998 8999999999999875
No 33
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=99.07 E-value=2.7e-10 Score=103.67 Aligned_cols=103 Identities=21% Similarity=0.230 Sum_probs=80.9
Q ss_pred ccccchhHHHHHHHHHHcCCeEEEEeCCC---------------hhhhHHHHHhhhccCCCCCCCccCCccEEEEcC---
Q 014930 139 YLVKNGQVLQFVKMLREKGKKLFLLTNSP---------------YYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQA--- 200 (415)
Q Consensus 139 Yi~k~p~l~~~L~~Lr~~GkklfLlTNS~---------------~~yt~~vm~~l~~~~~~~g~~W~~~FD~vi~~a--- 200 (415)
.+..-|++.++|++|+++|.+++++||++ ..++..+++.+ ++. ||.+++++
T Consensus 27 ~~~~~pgv~e~L~~L~~~g~~l~IvSN~~g~~~~~~~~~~~~~~~~~~~~~l~~~---------gl~--fd~ii~~~~~~ 95 (161)
T TIGR01261 27 KLRFEKGVIPALLKLKKAGYKFVMVTNQDGLGTPSFPQADFDGPHNLMLQIFRSQ---------GII--FDDVLICPHFP 95 (161)
T ss_pred HeeECCCHHHHHHHHHHCCCeEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHC---------CCc--eeEEEECCCCC
Confidence 45667999999999999999999999973 55666666665 343 77555432
Q ss_pred ------CCCCCCCCCCCceeeccCcccccccccccccCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCc
Q 014930 201 ------NKPDFYTSDHPFRCYDTEKDTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGW 274 (415)
Q Consensus 201 ------~KP~FF~~~~~fr~vd~~~~~~~~~~~~~l~~g~vY~~G~~~~~~~~~g~~g~~vLYvGDhi~~Di~~~k~~Gw 274 (415)
+|| + .+.+..+++.++.++++++||||.. .|+.+|+++||
T Consensus 96 ~~~~~~~KP------------~---------------------~~~~~~~~~~~~~~~~e~l~IGD~~-~Di~~A~~aGi 141 (161)
T TIGR01261 96 DDNCDCRKP------------K---------------------IKLLEPYLKKNLIDKARSYVIGDRE-TDMQLAENLGI 141 (161)
T ss_pred CCCCCCCCC------------C---------------------HHHHHHHHHHcCCCHHHeEEEeCCH-HHHHHHHHCCC
Confidence 455 2 2446688889999999999999997 99999999999
Q ss_pred eEEEEec-cchhH
Q 014930 275 RTAAIIH-ELESE 286 (415)
Q Consensus 275 rT~lVvp-EL~~E 286 (415)
.+++|.+ ||..+
T Consensus 142 ~~i~~~~~~~~~~ 154 (161)
T TIGR01261 142 RGIQYDEEELNWD 154 (161)
T ss_pred eEEEEChhhcCHH
Confidence 9999987 66544
No 34
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=99.07 E-value=2.5e-10 Score=104.34 Aligned_cols=98 Identities=17% Similarity=0.246 Sum_probs=77.9
Q ss_pred ccchhHHHHHHHHHHcCCeEEEEeCCC-hhhhHHHHHhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCCceeeccCc
Q 014930 141 VKNGQVLQFVKMLREKGKKLFLLTNSP-YYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDTEK 219 (415)
Q Consensus 141 ~k~p~l~~~L~~Lr~~GkklfLlTNS~-~~yt~~vm~~l~~~~~~~g~~W~~~FD~vi~~a~KP~FF~~~~~fr~vd~~~ 219 (415)
..-|++.++|+.|++.|++++++||++ ...+..+.+.+ | +.. +....|| ++
T Consensus 43 ~~~pgv~e~L~~Lk~~g~~l~I~Sn~~~~~~~~~~~~~~-------g--l~~-----~~~~~KP------------~p-- 94 (170)
T TIGR01668 43 EAYPALRDWIEELKAAGRKLLIVSNNAGEQRAKAVEKAL-------G--IPV-----LPHAVKP------------PG-- 94 (170)
T ss_pred CcChhHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHc-------C--CEE-----EcCCCCC------------Ch--
Confidence 345899999999999999999999999 67776665543 2 211 2345688 33
Q ss_pred ccccccccccccCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCceEEEEeccchh
Q 014930 220 DTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIHELES 285 (415)
Q Consensus 220 ~~~~~~~~~~l~~g~vY~~G~~~~~~~~~g~~g~~vLYvGDhi~~Di~~~k~~GwrT~lVvpEL~~ 285 (415)
..+..+++.+|+++++|+||||+++.||.+|+++||.|++|.+.-..
T Consensus 95 -------------------~~~~~~l~~~~~~~~~~l~IGDs~~~Di~aA~~aGi~~i~v~~g~~~ 141 (170)
T TIGR01668 95 -------------------CAFRRAHPEMGLTSEQVAVVGDRLFTDVMGGNRNGSYTILVEPLVHP 141 (170)
T ss_pred -------------------HHHHHHHHHcCCCHHHEEEECCcchHHHHHHHHcCCeEEEEccCcCC
Confidence 23567888999999999999999999999999999999999886543
No 35
>PRK11587 putative phosphatase; Provisional
Probab=99.07 E-value=3.6e-10 Score=106.52 Aligned_cols=99 Identities=12% Similarity=0.108 Sum_probs=80.4
Q ss_pred cccchhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhhhccCCCCCCCccCCccEEEEcC----CCCCCCCCCCCceee
Q 014930 140 LVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQA----NKPDFYTSDHPFRCY 215 (415)
Q Consensus 140 i~k~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~~~FD~vi~~a----~KP~FF~~~~~fr~v 215 (415)
+..-|++.++|+.|+++|++++++||+....+...+... .+ .+||.|++.. .||
T Consensus 82 ~~~~pg~~e~L~~L~~~g~~~~ivTn~~~~~~~~~l~~~---------~l-~~~~~i~~~~~~~~~KP------------ 139 (218)
T PRK11587 82 ITALPGAIALLNHLNKLGIPWAIVTSGSVPVASARHKAA---------GL-PAPEVFVTAERVKRGKP------------ 139 (218)
T ss_pred ceeCcCHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHhc---------CC-CCccEEEEHHHhcCCCC------------
Confidence 445689999999999999999999999988887666544 23 4577777653 677
Q ss_pred ccCcccccccccccccCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCceEEEEecc
Q 014930 216 DTEKDTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIHE 282 (415)
Q Consensus 216 d~~~~~~~~~~~~~l~~g~vY~~G~~~~~~~~~g~~g~~vLYvGDhi~~Di~~~k~~GwrT~lVvpE 282 (415)
+| -.+..+++.+|+.+++|+||||+. .||.+|+++|+.|++|.+.
T Consensus 140 ~p---------------------~~~~~~~~~~g~~p~~~l~igDs~-~di~aA~~aG~~~i~v~~~ 184 (218)
T PRK11587 140 EP---------------------DAYLLGAQLLGLAPQECVVVEDAP-AGVLSGLAAGCHVIAVNAP 184 (218)
T ss_pred Cc---------------------HHHHHHHHHcCCCcccEEEEecch-hhhHHHHHCCCEEEEECCC
Confidence 43 123477888999999999999998 9999999999999999653
No 36
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=99.05 E-value=6e-10 Score=106.37 Aligned_cols=102 Identities=13% Similarity=0.110 Sum_probs=81.7
Q ss_pred cccchhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhhhccCCCCCCCccC----CccEEEEcCCCCCCCCCCCCceee
Q 014930 140 LVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRE----LFDVVIAQANKPDFYTSDHPFRCY 215 (415)
Q Consensus 140 i~k~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~~----~FD~vi~~a~KP~FF~~~~~fr~v 215 (415)
...-|++.++|++|+++|++++++||++...+..++.+.. ..++.+ +||.+++ .||
T Consensus 94 ~~lypgv~e~L~~Lk~~G~~l~I~Sn~s~~~~~~~~~~~~------~~~L~~~f~~~fd~~~g--~KP------------ 153 (220)
T TIGR01691 94 SHLYPDVPPALEAWLQLGLRLAVYSSGSVPAQKLLFGHSD------AGNLTPYFSGYFDTTVG--LKT------------ 153 (220)
T ss_pred cCcCcCHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhhcc------ccchhhhcceEEEeCcc--cCC------------
Confidence 3456899999999999999999999999999988877641 113333 4554332 577
Q ss_pred ccCcccccccccccccCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCceEEEEeccc
Q 014930 216 DTEKDTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIHEL 283 (415)
Q Consensus 216 d~~~~~~~~~~~~~l~~g~vY~~G~~~~~~~~~g~~g~~vLYvGDhi~~Di~~~k~~GwrT~lVvpEL 283 (415)
++ ..+..+++.+|+++++||||||+. .||.+|+++||+|++|++.-
T Consensus 154 ~p---------------------~~y~~i~~~lgv~p~e~lfVgDs~-~Di~AA~~AG~~ti~v~r~g 199 (220)
T TIGR01691 154 EA---------------------QSYVKIAGQLGSPPREILFLSDII-NELDAARKAGLHTGQLVRPG 199 (220)
T ss_pred CH---------------------HHHHHHHHHhCcChhHEEEEeCCH-HHHHHHHHcCCEEEEEECCC
Confidence 43 345688999999999999999998 99999999999999998754
No 37
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=99.04 E-value=4.9e-10 Score=110.17 Aligned_cols=104 Identities=20% Similarity=0.285 Sum_probs=86.2
Q ss_pred ccccchhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCCceeeccC
Q 014930 139 YLVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDTE 218 (415)
Q Consensus 139 Yi~k~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~~~FD~vi~~a~KP~FF~~~~~fr~vd~~ 218 (415)
.+...|++.++|+.|+++|.++.|+||+..++++.+++.+ ++.++||.|++....+. .+
T Consensus 140 ~~~l~pg~~e~L~~L~~~gi~laIvSn~~~~~~~~~L~~~---------gl~~~F~~vi~~~~~~~-----------k~- 198 (273)
T PRK13225 140 ALQLFPGVADLLAQLRSRSLCLGILSSNSRQNIEAFLQRQ---------GLRSLFSVVQAGTPILS-----------KR- 198 (273)
T ss_pred cCCcCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHc---------CChhheEEEEecCCCCC-----------CH-
Confidence 3455799999999999999999999999999999999887 68899998876542210 00
Q ss_pred cccccccccccccCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCceEEEEeccch
Q 014930 219 KDTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIHELE 284 (415)
Q Consensus 219 ~~~~~~~~~~~l~~g~vY~~G~~~~~~~~~g~~g~~vLYvGDhi~~Di~~~k~~GwrT~lVvpEL~ 284 (415)
-.+..+++.+++.+++|+||||.. .||.+|+++||+|++|.+...
T Consensus 199 --------------------~~~~~~l~~~~~~p~~~l~IGDs~-~Di~aA~~AG~~~I~v~~g~~ 243 (273)
T PRK13225 199 --------------------RALSQLVAREGWQPAAVMYVGDET-RDVEAARQVGLIAVAVTWGFN 243 (273)
T ss_pred --------------------HHHHHHHHHhCcChhHEEEECCCH-HHHHHHHHCCCeEEEEecCCC
Confidence 013577888999999999999998 899999999999999987643
No 38
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=99.03 E-value=4.9e-10 Score=110.70 Aligned_cols=103 Identities=17% Similarity=0.152 Sum_probs=84.9
Q ss_pred cccchhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhhhccCCCCCCCccCCccEEEEc---CCCCCCCCCCCCceeec
Q 014930 140 LVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQ---ANKPDFYTSDHPFRCYD 216 (415)
Q Consensus 140 i~k~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~~~FD~vi~~---a~KP~FF~~~~~fr~vd 216 (415)
+..-|++.++|+.|++.|++++|+||++.+++..++..+. +..|.++|++|... ..|| +
T Consensus 143 ~~l~pGv~elL~~L~~~g~~l~IvTn~~~~~~~~~l~~~~------~~~~~~~~~~v~~~~~~~~KP------------~ 204 (286)
T PLN02779 143 LPLRPGVLRLMDEALAAGIKVAVCSTSNEKAVSKIVNTLL------GPERAQGLDVFAGDDVPKKKP------------D 204 (286)
T ss_pred CCchhhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhc------cccccCceEEEeccccCCCCC------------C
Confidence 4567899999999999999999999999999999888663 34566778876332 2566 3
Q ss_pred cCcccccccccccccCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCceEEEEecc
Q 014930 217 TEKDTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIHE 282 (415)
Q Consensus 217 ~~~~~~~~~~~~~l~~g~vY~~G~~~~~~~~~g~~g~~vLYvGDhi~~Di~~~k~~GwrT~lVvpE 282 (415)
| ..+..+++.+|+++++++||||.. .||.+|+++||++++|.+-
T Consensus 205 p---------------------~~~~~a~~~~~~~p~~~l~IGDs~-~Di~aA~~aG~~~i~v~~g 248 (286)
T PLN02779 205 P---------------------DIYNLAAETLGVDPSRCVVVEDSV-IGLQAAKAAGMRCIVTKSS 248 (286)
T ss_pred H---------------------HHHHHHHHHhCcChHHEEEEeCCH-HhHHHHHHcCCEEEEEccC
Confidence 3 234578899999999999999999 8999999999999999764
No 39
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=99.03 E-value=7.4e-10 Score=108.55 Aligned_cols=99 Identities=25% Similarity=0.340 Sum_probs=85.4
Q ss_pred cccchhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhhhccCCCCCCCccCCccEEEEcC----CCCCCCCCCCCceee
Q 014930 140 LVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQA----NKPDFYTSDHPFRCY 215 (415)
Q Consensus 140 i~k~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~~~FD~vi~~a----~KP~FF~~~~~fr~v 215 (415)
...-|++.++|+.|+++|.+++|+||++...+..++..+ +|..+||.|++.. .||
T Consensus 100 ~~~~~g~~e~L~~Lk~~g~~l~ivTn~~~~~~~~~l~~~---------~i~~~f~~i~~~d~~~~~Kp------------ 158 (272)
T PRK13223 100 TVVYPGVRDTLKWLKKQGVEMALITNKPERFVAPLLDQM---------KIGRYFRWIIGGDTLPQKKP------------ 158 (272)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEEECCcHHHHHHHHHHc---------CcHhhCeEEEecCCCCCCCC------------
Confidence 445689999999999999999999999999999888876 6778999888754 466
Q ss_pred ccCcccccccccccccCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCceEEEEec
Q 014930 216 DTEKDTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIH 281 (415)
Q Consensus 216 d~~~~~~~~~~~~~l~~g~vY~~G~~~~~~~~~g~~g~~vLYvGDhi~~Di~~~k~~GwrT~lVvp 281 (415)
++ ..+..+++.+|+++++|+||||+. .||.+++++||+|++|.+
T Consensus 159 ~p---------------------~~~~~~~~~~g~~~~~~l~IGD~~-~Di~aA~~aGi~~i~v~~ 202 (272)
T PRK13223 159 DP---------------------AALLFVMKMAGVPPSQSLFVGDSR-SDVLAAKAAGVQCVALSY 202 (272)
T ss_pred Cc---------------------HHHHHHHHHhCCChhHEEEECCCH-HHHHHHHHCCCeEEEEec
Confidence 32 235678889999999999999997 999999999999999976
No 40
>PLN02940 riboflavin kinase
Probab=99.02 E-value=4.2e-10 Score=115.61 Aligned_cols=100 Identities=18% Similarity=0.290 Sum_probs=86.3
Q ss_pred cccchhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHH-hhhccCCCCCCCccCCccEEEEcC----CCCCCCCCCCCcee
Q 014930 140 LVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMR-FMLEDSTGYTDSWRELFDVVIAQA----NKPDFYTSDHPFRC 214 (415)
Q Consensus 140 i~k~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~-~l~~~~~~~g~~W~~~FD~vi~~a----~KP~FF~~~~~fr~ 214 (415)
+..-|++.++|+.|++.|.+++|+||++...+...+. .+ +|.++||.|++.. .||
T Consensus 92 ~~l~pGv~elL~~Lk~~g~~l~IvTn~~~~~~~~~l~~~~---------gl~~~Fd~ii~~d~v~~~KP----------- 151 (382)
T PLN02940 92 IKALPGANRLIKHLKSHGVPMALASNSPRANIEAKISCHQ---------GWKESFSVIVGGDEVEKGKP----------- 151 (382)
T ss_pred CCCCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHhcc---------ChHhhCCEEEehhhcCCCCC-----------
Confidence 3445899999999999999999999999999988776 44 6889999999875 577
Q ss_pred eccCcccccccccccccCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCceEEEEecc
Q 014930 215 YDTEKDTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIHE 282 (415)
Q Consensus 215 vd~~~~~~~~~~~~~l~~g~vY~~G~~~~~~~~~g~~g~~vLYvGDhi~~Di~~~k~~GwrT~lVvpE 282 (415)
++ ..+..+++.+|+++++|+||||.. .||.+|+++|+++++|.+-
T Consensus 152 -~p---------------------~~~~~a~~~lgv~p~~~l~VGDs~-~Di~aA~~aGi~~I~v~~g 196 (382)
T PLN02940 152 -SP---------------------DIFLEAAKRLNVEPSNCLVIEDSL-PGVMAGKAAGMEVIAVPSI 196 (382)
T ss_pred -CH---------------------HHHHHHHHHcCCChhHEEEEeCCH-HHHHHHHHcCCEEEEECCC
Confidence 43 234578899999999999999999 8999999999999999763
No 41
>PLN02811 hydrolase
Probab=99.02 E-value=6.3e-10 Score=105.11 Aligned_cols=98 Identities=18% Similarity=0.177 Sum_probs=78.7
Q ss_pred cchhHHHHHHHHHHcCCeEEEEeCCChhhhH-HHHHhhhccCCCCCCCccCCccEEEEcC------CCCCCCCCCCCcee
Q 014930 142 KNGQVLQFVKMLREKGKKLFLLTNSPYYFVD-GGMRFMLEDSTGYTDSWRELFDVVIAQA------NKPDFYTSDHPFRC 214 (415)
Q Consensus 142 k~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~-~vm~~l~~~~~~~g~~W~~~FD~vi~~a------~KP~FF~~~~~fr~ 214 (415)
.-|++.++|+.|++.|.++.|+||+...... ....+. .|.++||.|++.. .||
T Consensus 79 l~~gv~e~l~~L~~~g~~~~i~S~~~~~~~~~~~~~~~---------~l~~~f~~i~~~~~~~~~~~KP----------- 138 (220)
T PLN02811 79 LMPGAERLVRHLHAKGIPIAIATGSHKRHFDLKTQRHG---------ELFSLMHHVVTGDDPEVKQGKP----------- 138 (220)
T ss_pred CCccHHHHHHHHHHCCCcEEEEeCCchhhHHHHHcccH---------HHHhhCCEEEECChhhccCCCC-----------
Confidence 3489999999999999999999999876444 333322 4778999888766 466
Q ss_pred eccCcccccccccccccCCeeeccCcHHHHHHHhC---CCCCcEEEEcccccccccccccCCceEEEEecc
Q 014930 215 YDTEKDTLAFTKVDAFIPNKIYYHGCLKSFLQITK---WNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIHE 282 (415)
Q Consensus 215 vd~~~~~~~~~~~~~l~~g~vY~~G~~~~~~~~~g---~~g~~vLYvGDhi~~Di~~~k~~GwrT~lVvpE 282 (415)
+| ..+..+++.+| +++++|+||||+. .|+.+|+++|++|++|.+-
T Consensus 139 -~p---------------------~~~~~a~~~~~~~~~~~~~~v~IgDs~-~di~aA~~aG~~~i~v~~~ 186 (220)
T PLN02811 139 -AP---------------------DIFLAAARRFEDGPVDPGKVLVFEDAP-SGVEAAKNAGMSVVMVPDP 186 (220)
T ss_pred -Cc---------------------HHHHHHHHHhCCCCCCccceEEEeccH-hhHHHHHHCCCeEEEEeCC
Confidence 43 23457777786 8999999999999 8999999999999999764
No 42
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=99.01 E-value=1.2e-09 Score=99.83 Aligned_cols=95 Identities=17% Similarity=0.235 Sum_probs=79.8
Q ss_pred ccchhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhhhccCCCCCCCccCCccEEEEcC----CCCCCCCCCCCceeec
Q 014930 141 VKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQA----NKPDFYTSDHPFRCYD 216 (415)
Q Consensus 141 ~k~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~~~FD~vi~~a----~KP~FF~~~~~fr~vd 216 (415)
..-|+ .++|+.|++. .++.|+||++...++..++.+ +|.+|||.|++.. .|| +
T Consensus 88 ~~~~~-~e~L~~L~~~-~~l~I~T~~~~~~~~~~l~~~---------~l~~~fd~i~~~~~~~~~KP------------~ 144 (188)
T PRK10725 88 EPLPL-IEVVKAWHGR-RPMAVGTGSESAIAEALLAHL---------GLRRYFDAVVAADDVQHHKP------------A 144 (188)
T ss_pred CCccH-HHHHHHHHhC-CCEEEEcCCchHHHHHHHHhC---------CcHhHceEEEehhhccCCCC------------C
Confidence 33455 5889999875 789999999999999999887 6889999988865 577 4
Q ss_pred cCcccccccccccccCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCceEEEEe
Q 014930 217 TEKDTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAII 280 (415)
Q Consensus 217 ~~~~~~~~~~~~~l~~g~vY~~G~~~~~~~~~g~~g~~vLYvGDhi~~Di~~~k~~GwrT~lVv 280 (415)
|+ .+..+++.+|..+++|+||||.. .||.+|+++||+|++|.
T Consensus 145 p~---------------------~~~~~~~~~~~~~~~~l~igDs~-~di~aA~~aG~~~i~~~ 186 (188)
T PRK10725 145 PD---------------------TFLRCAQLMGVQPTQCVVFEDAD-FGIQAARAAGMDAVDVR 186 (188)
T ss_pred hH---------------------HHHHHHHHcCCCHHHeEEEeccH-hhHHHHHHCCCEEEeec
Confidence 41 13578889999999999999997 99999999999999984
No 43
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=99.01 E-value=1.1e-09 Score=102.66 Aligned_cols=100 Identities=23% Similarity=0.298 Sum_probs=85.6
Q ss_pred cccchhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhhhccCCCCCCCccCCccEEEEcC----CCCCCCCCCCCceee
Q 014930 140 LVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQA----NKPDFYTSDHPFRCY 215 (415)
Q Consensus 140 i~k~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~~~FD~vi~~a----~KP~FF~~~~~fr~v 215 (415)
....|++.++|+.|+++|++++|+||+...+...++..+ +|.++||.+++.. .||
T Consensus 92 ~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~---------~l~~~f~~~~~~~~~~~~kp------------ 150 (226)
T PRK13222 92 SRLYPGVKETLAALKAAGYPLAVVTNKPTPFVAPLLEAL---------GIADYFSVVIGGDSLPNKKP------------ 150 (226)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHc---------CCccCccEEEcCCCCCCCCc------------
Confidence 456789999999999999999999999999999988876 5788999887753 455
Q ss_pred ccCcccccccccccccCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCceEEEEecc
Q 014930 216 DTEKDTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIHE 282 (415)
Q Consensus 216 d~~~~~~~~~~~~~l~~g~vY~~G~~~~~~~~~g~~g~~vLYvGDhi~~Di~~~k~~GwrT~lVvpE 282 (415)
++ ..+..+++.++.++++|+||||+. .|+.+++++||.|++|.+.
T Consensus 151 ~~---------------------~~~~~~~~~~~~~~~~~i~igD~~-~Di~~a~~~g~~~i~v~~g 195 (226)
T PRK13222 151 DP---------------------APLLLACEKLGLDPEEMLFVGDSR-NDIQAARAAGCPSVGVTYG 195 (226)
T ss_pred Ch---------------------HHHHHHHHHcCCChhheEEECCCH-HHHHHHHHCCCcEEEECcC
Confidence 22 234578889999999999999997 9999999999999999764
No 44
>PRK06769 hypothetical protein; Validated
Probab=99.00 E-value=4.3e-10 Score=103.11 Aligned_cols=100 Identities=16% Similarity=0.168 Sum_probs=73.3
Q ss_pred ccchhHHHHHHHHHHcCCeEEEEeCCChhh--------hHHHHHhhhccCCCCCCCccCCccEEE-E----cCCCCCCCC
Q 014930 141 VKNGQVLQFVKMLREKGKKLFLLTNSPYYF--------VDGGMRFMLEDSTGYTDSWRELFDVVI-A----QANKPDFYT 207 (415)
Q Consensus 141 ~k~p~l~~~L~~Lr~~GkklfLlTNS~~~y--------t~~vm~~l~~~~~~~g~~W~~~FD~vi-~----~a~KP~FF~ 207 (415)
..-|++.++|++|++.|++++++||++... +...+..+ ++.++|+.++ + ..+||
T Consensus 28 ~~~pgv~e~L~~Lk~~G~~l~I~Tn~~~~~~~~~~~~~~~~~l~~~---------g~~~~~~~~~~~~~~~~~~KP---- 94 (173)
T PRK06769 28 TLFPFTKASLQKLKANHIKIFSFTNQPGIADGIATIADFVQELKGF---------GFDDIYLCPHKHGDGCECRKP---- 94 (173)
T ss_pred EECCCHHHHHHHHHHCCCEEEEEECCchhcCCcCCHHHHHHHHHhC---------CcCEEEECcCCCCCCCCCCCC----
Confidence 346899999999999999999999998521 11112221 2222232222 1 23677
Q ss_pred CCCCceeeccCcccccccccccccCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCceEEEEeccc
Q 014930 208 SDHPFRCYDTEKDTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIHEL 283 (415)
Q Consensus 208 ~~~~fr~vd~~~~~~~~~~~~~l~~g~vY~~G~~~~~~~~~g~~g~~vLYvGDhi~~Di~~~k~~GwrT~lVvpEL 283 (415)
+| +.+..+++.+|.++++++||||+. .||.+|+++||.+++|.+.-
T Consensus 95 --------~p---------------------~~~~~~~~~l~~~p~~~i~IGD~~-~Di~aA~~aGi~~i~v~~g~ 140 (173)
T PRK06769 95 --------ST---------------------GMLLQAAEKHGLDLTQCAVIGDRW-TDIVAAAKVNATTILVRTGA 140 (173)
T ss_pred --------CH---------------------HHHHHHHHHcCCCHHHeEEEcCCH-HHHHHHHHCCCeEEEEecCC
Confidence 33 456788999999999999999998 99999999999999998753
No 45
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=98.98 E-value=6.1e-10 Score=106.72 Aligned_cols=95 Identities=20% Similarity=0.227 Sum_probs=77.3
Q ss_pred cccchhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhhhccCCCCCCCccCCccEEEEcC----CCCCCCCCCCCceee
Q 014930 140 LVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQA----NKPDFYTSDHPFRCY 215 (415)
Q Consensus 140 i~k~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~~~FD~vi~~a----~KP~FF~~~~~fr~v 215 (415)
+...|++.++|+.||+. .+++++||++.. ++.+ ++.++||.|++.. .||
T Consensus 112 ~~~~~gv~~~L~~L~~~-~~l~i~Tn~~~~-----~~~~---------gl~~~fd~i~~~~~~~~~KP------------ 164 (238)
T PRK10748 112 IDVPQATHDTLKQLAKK-WPLVAITNGNAQ-----PELF---------GLGDYFEFVLRAGPHGRSKP------------ 164 (238)
T ss_pred CCCCccHHHHHHHHHcC-CCEEEEECCCch-----HHHC---------CcHHhhceeEecccCCcCCC------------
Confidence 55668999999999975 789999998865 2322 5778999888765 567
Q ss_pred ccCcccccccccccccCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCceEEEEecc
Q 014930 216 DTEKDTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIHE 282 (415)
Q Consensus 216 d~~~~~~~~~~~~~l~~g~vY~~G~~~~~~~~~g~~g~~vLYvGDhi~~Di~~~k~~GwrT~lVvpE 282 (415)
++ ..+..+++.+|+.+++|+||||++..||.+|+++||+|+.|.+.
T Consensus 165 ~p---------------------~~~~~a~~~~~~~~~~~~~VGD~~~~Di~~A~~aG~~~i~v~~~ 210 (238)
T PRK10748 165 FS---------------------DMYHLAAEKLNVPIGEILHVGDDLTTDVAGAIRCGMQACWINPE 210 (238)
T ss_pred cH---------------------HHHHHHHHHcCCChhHEEEEcCCcHHHHHHHHHCCCeEEEEcCC
Confidence 33 22457788899999999999999879999999999999999764
No 46
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=98.97 E-value=6.2e-10 Score=99.08 Aligned_cols=99 Identities=18% Similarity=0.193 Sum_probs=72.3
Q ss_pred ccchhHHHHHHHHHHcCCeEEEEeCCCh---------------hhhHHHHHhhhccCCCCCCCccCCccEEE-----EcC
Q 014930 141 VKNGQVLQFVKMLREKGKKLFLLTNSPY---------------YFVDGGMRFMLEDSTGYTDSWRELFDVVI-----AQA 200 (415)
Q Consensus 141 ~k~p~l~~~L~~Lr~~GkklfLlTNS~~---------------~yt~~vm~~l~~~~~~~g~~W~~~FD~vi-----~~a 200 (415)
...|++.++|+.|+++|.+++++||++. ..+..+++.+ |..-..+|..++ ...
T Consensus 27 ~~~~g~~~~l~~Lk~~g~~~~I~Sn~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~l~~~~~~~~~~~~~~~~~~ 99 (147)
T TIGR01656 27 QLRPGAVPALLTLRAAGYTVVVVTNQSGIGRGYFSAEAFRAPNGRVLELLRQL-------GVAVDGVLFCPHHPADNCSC 99 (147)
T ss_pred EEcCChHHHHHHHHHCCCEEEEEeCCCcccCCcCCHHHHHHHHHHHHHHHHhC-------CCceeEEEECCCCCCCCCCC
Confidence 4568999999999999999999999984 4555555554 221001111111 112
Q ss_pred CCCCCCCCCCCceeeccCcccccccccccccCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCceEEEEe
Q 014930 201 NKPDFYTSDHPFRCYDTEKDTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAII 280 (415)
Q Consensus 201 ~KP~FF~~~~~fr~vd~~~~~~~~~~~~~l~~g~vY~~G~~~~~~~~~g~~g~~vLYvGDhi~~Di~~~k~~GwrT~lVv 280 (415)
+|| ++ ..+..+++.+|+++++|+||||+. .||.+|+++||+|++|.
T Consensus 100 ~KP------------~~---------------------~~~~~~~~~~~~~~~e~i~IGDs~-~Di~~A~~~Gi~~v~i~ 145 (147)
T TIGR01656 100 RKP------------KP---------------------GLILEALKRLGVDASRSLVVGDRL-RDLQAARNAGLAAVLLV 145 (147)
T ss_pred CCC------------CH---------------------HHHHHHHHHcCCChHHEEEEcCCH-HHHHHHHHCCCCEEEec
Confidence 566 32 345688899999999999999995 99999999999999885
No 47
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=98.97 E-value=1.6e-09 Score=99.16 Aligned_cols=101 Identities=22% Similarity=0.270 Sum_probs=72.2
Q ss_pred ccchhHHHHHHHHHHcCCeEEEEeCCCh----hhhHH-------HHHhhhccCCCCCCCccCCccEEEEc----------
Q 014930 141 VKNGQVLQFVKMLREKGKKLFLLTNSPY----YFVDG-------GMRFMLEDSTGYTDSWRELFDVVIAQ---------- 199 (415)
Q Consensus 141 ~k~p~l~~~L~~Lr~~GkklfLlTNS~~----~yt~~-------vm~~l~~~~~~~g~~W~~~FD~vi~~---------- 199 (415)
..-|++.++|+.|+++|.+++++||++. .++.. .+..++.. .+.. ||.++..
T Consensus 26 ~~~pgv~e~L~~Lk~~G~~l~i~TN~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~----~~~i~~~~~~~~~~~~~ 98 (176)
T TIGR00213 26 EFIDGVIDALRELKKMGYALVLVTNQSGIARGYFTEAQFEQLTEWMDWSLAE---RDVD----LDGIYYCPHHPEGVEEF 98 (176)
T ss_pred EECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHH---cCCC----ccEEEECCCCCcccccc
Confidence 3458999999999999999999999995 23321 11111100 0111 5655442
Q ss_pred -----CCCCCCCCCCCCceeeccCcccccccccccccCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCc
Q 014930 200 -----ANKPDFYTSDHPFRCYDTEKDTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGW 274 (415)
Q Consensus 200 -----a~KP~FF~~~~~fr~vd~~~~~~~~~~~~~l~~g~vY~~G~~~~~~~~~g~~g~~vLYvGDhi~~Di~~~k~~Gw 274 (415)
.+|| +| +.+..+++.+|+++++++||||.. .||.+|+++||
T Consensus 99 ~~~~~~~KP------------~p---------------------~~~~~a~~~~~~~~~~~v~VGDs~-~Di~aA~~aG~ 144 (176)
T TIGR00213 99 RQVCDCRKP------------KP---------------------GMLLQARKELHIDMAQSYMVGDKL-EDMQAGVAAKV 144 (176)
T ss_pred cCCCCCCCC------------CH---------------------HHHHHHHHHcCcChhhEEEEcCCH-HHHHHHHHCCC
Confidence 3455 33 445688899999999999999998 89999999999
Q ss_pred eE-EEEecc
Q 014930 275 RT-AAIIHE 282 (415)
Q Consensus 275 rT-~lVvpE 282 (415)
+| ++|.+.
T Consensus 145 ~~~i~v~~g 153 (176)
T TIGR00213 145 KTNVLVRTG 153 (176)
T ss_pred cEEEEEecC
Confidence 99 677664
No 48
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=98.93 E-value=2.3e-09 Score=98.34 Aligned_cols=101 Identities=20% Similarity=0.268 Sum_probs=73.3
Q ss_pred ccchhHHHHHHHHHHcCCeEEEEeCCChh----hhHHH-------HHhhhccCCCCCCCccCCccEEEE---------cC
Q 014930 141 VKNGQVLQFVKMLREKGKKLFLLTNSPYY----FVDGG-------MRFMLEDSTGYTDSWRELFDVVIA---------QA 200 (415)
Q Consensus 141 ~k~p~l~~~L~~Lr~~GkklfLlTNS~~~----yt~~v-------m~~l~~~~~~~g~~W~~~FD~vi~---------~a 200 (415)
..-|++.++|++|+++|.+++++||++.. ++... +...+. ..++ +||.+++ ..
T Consensus 29 ~~~pgv~e~L~~Lk~~g~~l~I~Tn~~~~~~~~~~~~~~~~~~~~~~~~l~-----~~g~--~f~~i~~~~~~~~~~~~~ 101 (181)
T PRK08942 29 IPIPGSIEAIARLKQAGYRVVVATNQSGIARGLFTEAQLNALHEKMDWSLA-----DRGG--RLDGIYYCPHHPEDGCDC 101 (181)
T ss_pred EECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHHH-----HcCC--ccceEEECCCCCCCCCcC
Confidence 34589999999999999999999999731 22111 111111 0012 3776654 23
Q ss_pred CCCCCCCCCCCceeeccCcccccccccccccCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCceEEEEe
Q 014930 201 NKPDFYTSDHPFRCYDTEKDTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAII 280 (415)
Q Consensus 201 ~KP~FF~~~~~fr~vd~~~~~~~~~~~~~l~~g~vY~~G~~~~~~~~~g~~g~~vLYvGDhi~~Di~~~k~~GwrT~lVv 280 (415)
.|| ++ ..+..+++.+|+.+++++||||+. .||.+|+++||++++|.
T Consensus 102 ~KP------------~p---------------------~~~~~~~~~l~~~~~~~~~VgDs~-~Di~~A~~aG~~~i~v~ 147 (181)
T PRK08942 102 RKP------------KP---------------------GMLLSIAERLNIDLAGSPMVGDSL-RDLQAAAAAGVTPVLVR 147 (181)
T ss_pred CCC------------CH---------------------HHHHHHHHHcCCChhhEEEEeCCH-HHHHHHHHCCCeEEEEc
Confidence 677 43 234578889999999999999998 89999999999999986
Q ss_pred cc
Q 014930 281 HE 282 (415)
Q Consensus 281 pE 282 (415)
+.
T Consensus 148 ~g 149 (181)
T PRK08942 148 TG 149 (181)
T ss_pred CC
Confidence 64
No 49
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=98.93 E-value=9.9e-10 Score=101.34 Aligned_cols=112 Identities=15% Similarity=0.125 Sum_probs=78.9
Q ss_pred ccchhHHHHHHHHHHcCCeEEEEeCC-ChhhhHHHHHhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCCceeeccCc
Q 014930 141 VKNGQVLQFVKMLREKGKKLFLLTNS-PYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDTEK 219 (415)
Q Consensus 141 ~k~p~l~~~L~~Lr~~GkklfLlTNS-~~~yt~~vm~~l~~~~~~~g~~W~~~FD~vi~~a~KP~FF~~~~~fr~vd~~~ 219 (415)
..-|++.++|+.|+++|.+++++||+ ...++..+|..+-=...+...+..++||.|++.. +|. ...| ++
T Consensus 45 ~l~pGv~elL~~Lk~~G~~l~I~Sn~~~~~~~~~~L~~~~l~~~~~~~~~~~~Fd~iv~~~-~~~---~~kp----~~-- 114 (174)
T TIGR01685 45 TLIKEVRDVLQTLKDAGTYLATASWNDVPEWAYEILGTFEITYAGKTVPMHSLFDDRIEIY-KPN---KAKQ----LE-- 114 (174)
T ss_pred EEcccHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHhCCcCCCCCcccHHHhceeeeecc-CCc---hHHH----HH--
Confidence 34489999999999999999999999 9999999998861000000111228999888865 230 0001 00
Q ss_pred ccccccccccccCCeeeccCcHHHHHHHh--CCCCCcEEEEcccccccccccccCCceEEEEecc
Q 014930 220 DTLAFTKVDAFIPNKIYYHGCLKSFLQIT--KWNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIHE 282 (415)
Q Consensus 220 ~~~~~~~~~~l~~g~vY~~G~~~~~~~~~--g~~g~~vLYvGDhi~~Di~~~k~~GwrT~lVvpE 282 (415)
-.+..+.+.. |+++++|+||||.. .||.+|+++|++|++|.+-
T Consensus 115 -------------------~i~~~~~~~~~~gl~p~e~l~VgDs~-~di~aA~~aGi~~i~v~~g 159 (174)
T TIGR01685 115 -------------------MILQKVNKVDPSVLKPAQILFFDDRT-DNVREVWGYGVTSCYCPSG 159 (174)
T ss_pred -------------------HHHHHhhhcccCCCCHHHeEEEcChh-HhHHHHHHhCCEEEEcCCC
Confidence 0122333333 68999999999999 9999999999999999664
No 50
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=98.90 E-value=1.8e-09 Score=101.54 Aligned_cols=96 Identities=13% Similarity=0.095 Sum_probs=80.0
Q ss_pred ccccchhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhhhccCCCCCCCccCCcc-EEEEc----CCCCCCCCCCCCce
Q 014930 139 YLVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFD-VVIAQ----ANKPDFYTSDHPFR 213 (415)
Q Consensus 139 Yi~k~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~~~FD-~vi~~----a~KP~FF~~~~~fr 213 (415)
.+...|++.++|+.| +.++.|+||++...+...+..+ ++.++|| +|+++ ..||
T Consensus 86 ~~~~~~gv~~~L~~L---~~~~~ivTn~~~~~~~~~l~~~---------~l~~~F~~~v~~~~~~~~~KP---------- 143 (221)
T PRK10563 86 ELEPIAGANALLESI---TVPMCVVSNGPVSKMQHSLGKT---------GMLHYFPDKLFSGYDIQRWKP---------- 143 (221)
T ss_pred cCCcCCCHHHHHHHc---CCCEEEEeCCcHHHHHHHHHhc---------ChHHhCcceEeeHHhcCCCCC----------
Confidence 456678999999999 4899999999999999988876 6778895 66554 2677
Q ss_pred eeccCcccccccccccccCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCceEEEEe
Q 014930 214 CYDTEKDTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAII 280 (415)
Q Consensus 214 ~vd~~~~~~~~~~~~~l~~g~vY~~G~~~~~~~~~g~~g~~vLYvGDhi~~Di~~~k~~GwrT~lVv 280 (415)
+| -.+..+++.+|+.+++|+||||+. .||.+|+++|++++++.
T Consensus 144 --~p---------------------~~~~~a~~~~~~~p~~~l~igDs~-~di~aA~~aG~~~i~~~ 186 (221)
T PRK10563 144 --DP---------------------ALMFHAAEAMNVNVENCILVDDSS-AGAQSGIAAGMEVFYFC 186 (221)
T ss_pred --Ch---------------------HHHHHHHHHcCCCHHHeEEEeCcH-hhHHHHHHCCCEEEEEC
Confidence 43 234678889999999999999999 99999999999999885
No 51
>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=98.87 E-value=2.5e-09 Score=102.86 Aligned_cols=101 Identities=23% Similarity=0.346 Sum_probs=77.3
Q ss_pred cccccccchhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhhhccCCCCCCCccCCccEEEEcC----CCCCCCCCCCC
Q 014930 136 PNRYLVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQA----NKPDFYTSDHP 211 (415)
Q Consensus 136 p~kYi~k~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~~~FD~vi~~a----~KP~FF~~~~~ 211 (415)
|+-+..-++.. ++|++||+.|..+.++||=+..+- .+..-+ +...+||.|++++ .||
T Consensus 109 ~~~~~~~~~~~-~~lq~lR~~g~~l~iisN~d~r~~-~~l~~~---------~l~~~fD~vv~S~e~g~~KP-------- 169 (237)
T KOG3085|consen 109 PSAWKYLDGMQ-ELLQKLRKKGTILGIISNFDDRLR-LLLLPL---------GLSAYFDFVVESCEVGLEKP-------- 169 (237)
T ss_pred ccCceeccHHH-HHHHHHHhCCeEEEEecCCcHHHH-HHhhcc---------CHHHhhhhhhhhhhhccCCC--------
Confidence 34444444544 999999999966666666554444 322222 4458999999877 899
Q ss_pred ceeeccCcccccccccccccCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCceEEEEe
Q 014930 212 FRCYDTEKDTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAII 280 (415)
Q Consensus 212 fr~vd~~~~~~~~~~~~~l~~g~vY~~G~~~~~~~~~g~~g~~vLYvGDhi~~Di~~~k~~GwrT~lVv 280 (415)
|| .-...+++.+|+.+.+|++|||..-+|+.+|+.+||+|++|.
T Consensus 170 ----Dp---------------------~If~~al~~l~v~Pee~vhIgD~l~nD~~gA~~~G~~ailv~ 213 (237)
T KOG3085|consen 170 ----DP---------------------RIFQLALERLGVKPEECVHIGDLLENDYEGARNLGWHAILVD 213 (237)
T ss_pred ----Ch---------------------HHHHHHHHHhCCChHHeEEecCccccccHhHHHcCCEEEEEc
Confidence 65 223578999999999999999999999999999999999997
No 52
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=98.84 E-value=1.2e-08 Score=93.70 Aligned_cols=91 Identities=21% Similarity=0.337 Sum_probs=71.4
Q ss_pred chhHHHHHHHHHHcCC--eEEEEeCC-------ChhhhHHHHHhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCCce
Q 014930 143 NGQVLQFVKMLREKGK--KLFLLTNS-------PYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFR 213 (415)
Q Consensus 143 ~p~l~~~L~~Lr~~Gk--klfLlTNS-------~~~yt~~vm~~l~~~~~~~g~~W~~~FD~vi~~a~KP~FF~~~~~fr 213 (415)
.|.+..|++++|+.+. +++|+||| ....+..+-+.+ |. .++...++||
T Consensus 61 ~~~~~~~~~~l~~~~~~~~v~IvSNsaGs~~d~~~~~a~~~~~~l-------gI------pvl~h~~kKP---------- 117 (168)
T PF09419_consen 61 PPEYAEWLNELKKQFGKDRVLIVSNSAGSSDDPDGERAEALEKAL-------GI------PVLRHRAKKP---------- 117 (168)
T ss_pred CHHHHHHHHHHHHHCCCCeEEEEECCCCcccCccHHHHHHHHHhh-------CC------cEEEeCCCCC----------
Confidence 4689999999999875 59999999 477777776665 43 4456778999
Q ss_pred eeccCcccccccccccccCCeeeccCcHHHHHHHhCC-----CCCcEEEEcccccccccccccCCceEEEEec
Q 014930 214 CYDTEKDTLAFTKVDAFIPNKIYYHGCLKSFLQITKW-----NGPEVIYFGDHLFSDLRGPSKAGWRTAAIIH 281 (415)
Q Consensus 214 ~vd~~~~~~~~~~~~~l~~g~vY~~G~~~~~~~~~g~-----~g~~vLYvGDhi~~Di~~~k~~GwrT~lVvp 281 (415)
|+..++++.++. +++++++|||++|+||+.+++.|..|++|..
T Consensus 118 -------------------------~~~~~i~~~~~~~~~~~~p~eiavIGDrl~TDVl~gN~~G~~tilv~~ 165 (168)
T PF09419_consen 118 -------------------------GCFREILKYFKCQKVVTSPSEIAVIGDRLFTDVLMGNRMGSYTILVTD 165 (168)
T ss_pred -------------------------ccHHHHHHHHhhccCCCCchhEEEEcchHHHHHHHhhccCceEEEEec
Confidence 223355555543 4889999999999999999999999999853
No 53
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=98.82 E-value=6.7e-09 Score=94.88 Aligned_cols=99 Identities=16% Similarity=0.207 Sum_probs=74.5
Q ss_pred CcccccccchhHHHHHHHHHHcCCeEEEEeCCChh------------hhHHHHHhhhccCCCCCCCccCCccEEEEcC--
Q 014930 135 DPNRYLVKNGQVLQFVKMLREKGKKLFLLTNSPYY------------FVDGGMRFMLEDSTGYTDSWRELFDVVIAQA-- 200 (415)
Q Consensus 135 np~kYi~k~p~l~~~L~~Lr~~GkklfLlTNS~~~------------yt~~vm~~l~~~~~~~g~~W~~~FD~vi~~a-- 200 (415)
+|++....-|++.++|++|+++|.+++++||++.. .+..+++.+ |.. ++.+++..
T Consensus 36 ~~~~~~~~~pgv~e~L~~Lk~~G~~l~I~TN~~~~~~~~~~~~~~~~~i~~~l~~~-------gl~----~~~ii~~~~~ 104 (166)
T TIGR01664 36 SASDWRFLYPEIPAKLQELDDEGYKIVIFTNQSGIGRGKLSAESFKNKIEAFLEKL-------KVP----IQVLAATHAG 104 (166)
T ss_pred ChHHeEEecCCHHHHHHHHHHCCCEEEEEeCCcccccCcccHHHHHHHHHHHHHHc-------CCC----EEEEEecCCC
Confidence 45555445689999999999999999999998874 456666665 322 24444432
Q ss_pred --CCCCCCCCCCCceeeccCcccccccccccccCCeeeccCcHHHHHHHhC--CCCCcEEEEcccc-------ccccccc
Q 014930 201 --NKPDFYTSDHPFRCYDTEKDTLAFTKVDAFIPNKIYYHGCLKSFLQITK--WNGPEVIYFGDHL-------FSDLRGP 269 (415)
Q Consensus 201 --~KP~FF~~~~~fr~vd~~~~~~~~~~~~~l~~g~vY~~G~~~~~~~~~g--~~g~~vLYvGDhi-------~~Di~~~ 269 (415)
+|| ++ +.+..+++.+| +++++++||||.. -.||.+|
T Consensus 105 ~~~KP------------~p---------------------~~~~~~~~~~~~~~~~~~~v~VGD~~~~~~~~~~~Di~aA 151 (166)
T TIGR01664 105 LYRKP------------MT---------------------GMWEYLQSQYNSPIKMTRSFYVGDAAGRKLDFSDADIKFA 151 (166)
T ss_pred CCCCC------------cc---------------------HHHHHHHHHcCCCCCchhcEEEECCCCCCCCCchhHHHHH
Confidence 456 32 44567888888 8999999999996 2799999
Q ss_pred ccCCceEE
Q 014930 270 SKAGWRTA 277 (415)
Q Consensus 270 k~~GwrT~ 277 (415)
+++|++++
T Consensus 152 ~~aGi~~~ 159 (166)
T TIGR01664 152 KNLGLEFK 159 (166)
T ss_pred HHCCCCcC
Confidence 99999884
No 54
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=98.77 E-value=1.2e-08 Score=90.26 Aligned_cols=86 Identities=26% Similarity=0.374 Sum_probs=70.7
Q ss_pred chhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhhhccCCCCCCCccCCccEEEEcC---CCCCCCCCCCCceeeccCc
Q 014930 143 NGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQA---NKPDFYTSDHPFRCYDTEK 219 (415)
Q Consensus 143 ~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~~~FD~vi~~a---~KP~FF~~~~~fr~vd~~~ 219 (415)
.|++.++|+.|+++|++++++||++...+...++.+ +.++|+.|++.. .|| ++
T Consensus 66 ~~g~~e~l~~L~~~g~~~~i~T~~~~~~~~~~~~~~----------l~~~f~~i~~~~~~~~Kp------------~~-- 121 (154)
T TIGR01549 66 IRGAADLLKRLKEAGIKLGIISNGSLRAQKLLLRKH----------LGDYFDLILGSDEFGAKP------------EP-- 121 (154)
T ss_pred ccCHHHHHHHHHHCcCeEEEEeCCchHHHHHHHHHH----------HHhcCcEEEecCCCCCCc------------CH--
Confidence 489999999999999999999999999999988874 235688877644 455 32
Q ss_pred ccccccccccccCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCC
Q 014930 220 DTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAG 273 (415)
Q Consensus 220 ~~~~~~~~~~l~~g~vY~~G~~~~~~~~~g~~g~~vLYvGDhi~~Di~~~k~~G 273 (415)
..+..+++.+|+++ +|+||||+. .|+.+|+++|
T Consensus 122 -------------------~~~~~~~~~~~~~~-~~l~iGDs~-~Di~aa~~aG 154 (154)
T TIGR01549 122 -------------------EIFLAALESLGLPP-EVLHVGDNL-NDIEGARNAG 154 (154)
T ss_pred -------------------HHHHHHHHHcCCCC-CEEEEeCCH-HHHHHHHHcc
Confidence 23457888999998 999999996 9999988776
No 55
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=98.73 E-value=2e-08 Score=93.03 Aligned_cols=85 Identities=18% Similarity=0.099 Sum_probs=71.3
Q ss_pred hhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhhhccCCCCCCCccCCccEEEEcC---CCCCCCCCCCCceeeccCcc
Q 014930 144 GQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQA---NKPDFYTSDHPFRCYDTEKD 220 (415)
Q Consensus 144 p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~~~FD~vi~~a---~KP~FF~~~~~fr~vd~~~~ 220 (415)
+...++|+.|++.|.++.|+||++...+..+++.+ +|..+||.|++.. .|| +|
T Consensus 109 ~~~~~~L~~l~~~g~~~~i~T~~~~~~~~~~l~~~---------gl~~~f~~~~~~~~~~~KP------------~p--- 164 (197)
T TIGR01548 109 LTPKGLLRELHRAPKGMAVVTGRPRKDAAKFLTTH---------GLEILFPVQIWMEDCPPKP------------NP--- 164 (197)
T ss_pred cCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHc---------CchhhCCEEEeecCCCCCc------------CH---
Confidence 34589999999999999999999999999999887 6789999888755 366 43
Q ss_pred cccccccccccCCeeeccCcHHHHHHHhCCCCCcEEEEccccccccccccc
Q 014930 221 TLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSK 271 (415)
Q Consensus 221 ~~~~~~~~~l~~g~vY~~G~~~~~~~~~g~~g~~vLYvGDhi~~Di~~~k~ 271 (415)
..+..+++.+|+++++|+||||.. .||.+|++
T Consensus 165 ------------------~~~~~~~~~~~~~~~~~i~vGD~~-~Di~aA~~ 196 (197)
T TIGR01548 165 ------------------EPLILAAKALGVEACHAAMVGDTV-DDIITGRK 196 (197)
T ss_pred ------------------HHHHHHHHHhCcCcccEEEEeCCH-HHHHHHHh
Confidence 224577888999999999999999 89988764
No 56
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=98.71 E-value=3e-08 Score=104.07 Aligned_cols=97 Identities=13% Similarity=0.220 Sum_probs=79.5
Q ss_pred cchhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhhhccCCCCCCCccCCccEEEEcCC---CCCCCCCCCCceeeccC
Q 014930 142 KNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQAN---KPDFYTSDHPFRCYDTE 218 (415)
Q Consensus 142 k~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~~~FD~vi~~a~---KP~FF~~~~~fr~vd~~ 218 (415)
.-|++.++|+.||+.|+++.|+||++.+++..+++++ +|.++||.|++... || +|+
T Consensus 331 l~pG~~e~L~~Lk~~g~~l~IvS~~~~~~~~~~l~~~---------~l~~~f~~i~~~d~v~~~~------------kP~ 389 (459)
T PRK06698 331 LYPNVKEIFTYIKENNCSIYIASNGLTEYLRAIVSYY---------DLDQWVTETFSIEQINSLN------------KSD 389 (459)
T ss_pred cCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHC---------CcHhhcceeEecCCCCCCC------------CcH
Confidence 3589999999999999999999999999999999987 78899999888641 23 110
Q ss_pred cccccccccccccCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCceEEEEeccc
Q 014930 219 KDTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIHEL 283 (415)
Q Consensus 219 ~~~~~~~~~~~l~~g~vY~~G~~~~~~~~~g~~g~~vLYvGDhi~~Di~~~k~~GwrT~lVvpEL 283 (415)
.+..+++.+ .+++|+||||+. .||.+|+++|++|++|.+..
T Consensus 390 ---------------------~~~~al~~l--~~~~~v~VGDs~-~Di~aAk~AG~~~I~v~~~~ 430 (459)
T PRK06698 390 ---------------------LVKSILNKY--DIKEAAVVGDRL-SDINAAKDNGLIAIGCNFDF 430 (459)
T ss_pred ---------------------HHHHHHHhc--CcceEEEEeCCH-HHHHHHHHCCCeEEEEeCCC
Confidence 123445444 568999999998 99999999999999997743
No 57
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=98.69 E-value=4.1e-08 Score=99.94 Aligned_cols=97 Identities=22% Similarity=0.272 Sum_probs=74.6
Q ss_pred cccchhHHHHHHHHHHcCCeEEEEeCC---------------ChhhhHHHHHhhhccCCCCCCCccCCccEEEEc-----
Q 014930 140 LVKNGQVLQFVKMLREKGKKLFLLTNS---------------PYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQ----- 199 (415)
Q Consensus 140 i~k~p~l~~~L~~Lr~~GkklfLlTNS---------------~~~yt~~vm~~l~~~~~~~g~~W~~~FD~vi~~----- 199 (415)
+...|++.++|+.|+++|.+++++||+ +..++..++..+ ++ +||.|+..
T Consensus 29 ~~l~pGV~e~L~~Lk~~G~kL~IvTNq~g~G~~~~~~~~l~~~~~~i~~iL~~~---------gl--~fd~i~i~~~~~s 97 (354)
T PRK05446 29 LAFEPGVIPALLKLQKAGYKLVMVTNQDGLGTDSFPQEDFDPPHNLMMQIFESQ---------GI--KFDEVLICPHFPE 97 (354)
T ss_pred ceECcCHHHHHHHHHhCCCeEEEEECCccccCccccHHHHhhHHHHHHHHHHHc---------CC--ceeeEEEeCCcCc
Confidence 566799999999999999999999996 233444444443 22 26655443
Q ss_pred ----CCCCCCCCCCCCceeeccCcccccccccccccCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCce
Q 014930 200 ----ANKPDFYTSDHPFRCYDTEKDTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWR 275 (415)
Q Consensus 200 ----a~KP~FF~~~~~fr~vd~~~~~~~~~~~~~l~~g~vY~~G~~~~~~~~~g~~g~~vLYvGDhi~~Di~~~k~~Gwr 275 (415)
.+|| ++ +.+..+++..+..+++++||||.. +|+.+|+.+||+
T Consensus 98 d~~~~rKP------------~p---------------------~~l~~a~~~l~v~~~~svmIGDs~-sDi~aAk~aGi~ 143 (354)
T PRK05446 98 DNCSCRKP------------KT---------------------GLVEEYLAEGAIDLANSYVIGDRE-TDVQLAENMGIK 143 (354)
T ss_pred ccCCCCCC------------CH---------------------HHHHHHHHHcCCCcccEEEEcCCH-HHHHHHHHCCCe
Confidence 3555 22 445677788899999999999998 999999999999
Q ss_pred EEEEec
Q 014930 276 TAAIIH 281 (415)
Q Consensus 276 T~lVvp 281 (415)
+++|-|
T Consensus 144 ~I~v~~ 149 (354)
T PRK05446 144 GIRYAR 149 (354)
T ss_pred EEEEEC
Confidence 999977
No 58
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=98.69 E-value=3.4e-08 Score=83.03 Aligned_cols=117 Identities=29% Similarity=0.286 Sum_probs=82.4
Q ss_pred cccchhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCCceeeccCc
Q 014930 140 LVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDTEK 219 (415)
Q Consensus 140 i~k~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~~~FD~vi~~a~KP~FF~~~~~fr~vd~~~ 219 (415)
+...|++.++|++|+++|.+++++||+....+..+++.+ .+..+|+.+++....+.+-......
T Consensus 23 ~~~~~~~~~~l~~l~~~g~~i~ivS~~~~~~~~~~~~~~---------~~~~~~~~i~~~~~~~~~~~~~~~~------- 86 (139)
T cd01427 23 LELYPGVKEALKELKEKGIKLALATNKSRREVLELLEEL---------GLDDYFDPVITSNGAAIYYPKEGLF------- 86 (139)
T ss_pred CCcCcCHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHHc---------CCchhhhheeccchhhhhccccccc-------
Confidence 445689999999999999999999999999999988875 4557788777766444221111000
Q ss_pred ccccccccccccCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCceEEEE
Q 014930 220 DTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAI 279 (415)
Q Consensus 220 ~~~~~~~~~~l~~g~vY~~G~~~~~~~~~g~~g~~vLYvGDhi~~Di~~~k~~GwrT~lV 279 (415)
.....+.-.++. ......+++..+...++++||||+. +|+..++++||+|++|
T Consensus 87 --~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~igD~~-~d~~~~~~~g~~~i~v 139 (139)
T cd01427 87 --LGGGPFDIGKPN----PDKLLAALKLLGVDPEEVLMVGDSL-NDIEMAKAAGGLGVAV 139 (139)
T ss_pred --ccccccccCCCC----HHHHHHHHHHcCCChhhEEEeCCCH-HHHHHHHHcCCceeeC
Confidence 000000000111 1234567778888889999999999 9999999999999975
No 59
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=98.68 E-value=6.9e-08 Score=93.27 Aligned_cols=105 Identities=15% Similarity=0.228 Sum_probs=77.2
Q ss_pred HHHHhcCcccccccchhHHHHHHHHHHcCCeEEEEeCC----ChhhhHHHHHhhhccCCCCCCCccCCccEEEEcCC---
Q 014930 129 HRGILSDPNRYLVKNGQVLQFVKMLREKGKKLFLLTNS----PYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQAN--- 201 (415)
Q Consensus 129 k~~v~~np~kYi~k~p~l~~~L~~Lr~~GkklfLlTNS----~~~yt~~vm~~l~~~~~~~g~~W~~~FD~vi~~a~--- 201 (415)
...+.+.-+....+-+...++|+.++++|.+++++||+ ....++.+++.+ ++.++|++|+++..
T Consensus 102 w~~~~~~~~~~s~p~~~a~elL~~l~~~G~~i~iVTnr~~~k~~~~a~~ll~~l---------Gi~~~f~~i~~~d~~~~ 172 (237)
T TIGR01672 102 WEKVNNGWDEFSIPKEVARQLIDMHQRRGDAIFFVTGRTPGKTDTVSKTLAKNF---------HIPAMNPVIFAGDKPGQ 172 (237)
T ss_pred HHHHHHhcccCCcchhHHHHHHHHHHHCCCEEEEEeCCCCCcCHHHHHHHHHHh---------CCchheeEEECCCCCCC
Confidence 33333333444555566999999999999999999999 667888888876 45678998776542
Q ss_pred -CCCCCCCCCCceeeccCcccccccccccccCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCceEEEEe
Q 014930 202 -KPDFYTSDHPFRCYDTEKDTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAII 280 (415)
Q Consensus 202 -KP~FF~~~~~fr~vd~~~~~~~~~~~~~l~~g~vY~~G~~~~~~~~~g~~g~~vLYvGDhi~~Di~~~k~~GwrT~lVv 280 (415)
|| ++ ..+++..|. ++||||+. .||.+|+++|.++++|.
T Consensus 173 ~Kp------------~~------------------------~~~l~~~~i----~i~vGDs~-~DI~aAk~AGi~~I~V~ 211 (237)
T TIGR01672 173 YQY------------TK------------------------TQWIQDKNI----RIHYGDSD-NDITAAKEAGARGIRIL 211 (237)
T ss_pred CCC------------CH------------------------HHHHHhCCC----eEEEeCCH-HHHHHHHHCCCCEEEEE
Confidence 22 11 123443433 79999999 99999999999999997
Q ss_pred ccc
Q 014930 281 HEL 283 (415)
Q Consensus 281 pEL 283 (415)
+.-
T Consensus 212 ~g~ 214 (237)
T TIGR01672 212 RAS 214 (237)
T ss_pred ecC
Confidence 653
No 60
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.66 E-value=4.4e-08 Score=112.38 Aligned_cols=99 Identities=19% Similarity=0.282 Sum_probs=86.0
Q ss_pred cchhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhhhccCCCCCCCcc-CCccEEEEcC----CCCCCCCCCCCceeec
Q 014930 142 KNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWR-ELFDVVIAQA----NKPDFYTSDHPFRCYD 216 (415)
Q Consensus 142 k~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~-~~FD~vi~~a----~KP~FF~~~~~fr~vd 216 (415)
.-|++.++|+.|+++|.++.|+||+....++.+++.+ +|. .+||.|++.. .|| +
T Consensus 162 ~~pG~~elL~~Lk~~G~~l~IvSn~~~~~~~~~L~~~---------gl~~~~Fd~iv~~~~~~~~KP------------~ 220 (1057)
T PLN02919 162 GFPGALELITQCKNKGLKVAVASSADRIKVDANLAAA---------GLPLSMFDAIVSADAFENLKP------------A 220 (1057)
T ss_pred cCccHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHc---------CCChhHCCEEEECcccccCCC------------C
Confidence 3689999999999999999999999999999999876 564 7899988765 577 3
Q ss_pred cCcccccccccccccCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCceEEEEeccc
Q 014930 217 TEKDTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIHEL 283 (415)
Q Consensus 217 ~~~~~~~~~~~~~l~~g~vY~~G~~~~~~~~~g~~g~~vLYvGDhi~~Di~~~k~~GwrT~lVvpEL 283 (415)
| ..+..+++.+|+.+++|+||||.. .||.+|+++||++++|.+..
T Consensus 221 P---------------------e~~~~a~~~lgv~p~e~v~IgDs~-~Di~AA~~aGm~~I~v~~~~ 265 (1057)
T PLN02919 221 P---------------------DIFLAAAKILGVPTSECVVIEDAL-AGVQAARAAGMRCIAVTTTL 265 (1057)
T ss_pred H---------------------HHHHHHHHHcCcCcccEEEEcCCH-HHHHHHHHcCCEEEEECCCC
Confidence 3 234578889999999999999998 89999999999999998864
No 61
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=98.66 E-value=1.1e-07 Score=91.92 Aligned_cols=108 Identities=14% Similarity=0.215 Sum_probs=79.4
Q ss_pred hHHHHhcCcccccccchhHHHHHHHHHHcCCeEEEEeCCC----hhhhHHHHHhhhccCCCCCCCccCCccEEEEcCC--
Q 014930 128 VHRGILSDPNRYLVKNGQVLQFVKMLREKGKKLFLLTNSP----YYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQAN-- 201 (415)
Q Consensus 128 lk~~v~~np~kYi~k~p~l~~~L~~Lr~~GkklfLlTNS~----~~yt~~vm~~l~~~~~~~g~~W~~~FD~vi~~a~-- 201 (415)
+.+.+.++...+..+-|++.++|+.|++.|.++++|||.+ ...++.+++.+ |-+-.++|++++++..
T Consensus 101 fw~~y~~~~~~~a~p~~Ga~elL~~L~~~G~~I~iVTnR~~~k~~~t~~~Llk~~-------gip~~~~f~vil~gd~~~ 173 (237)
T PRK11009 101 FWEKMNNGWDEFSIPKEVARQLIDMHVKRGDSIYFITGRTATKTETVSKTLADDF-------HIPADNMNPVIFAGDKPG 173 (237)
T ss_pred HHHHHHhcccccCcchHHHHHHHHHHHHCCCeEEEEeCCCCcccHHHHHHHHHHc-------CCCcccceeEEEcCCCCC
Confidence 4555556566677777899999999999999999999954 55666666544 3322678998877662
Q ss_pred CCCCCCCCCCceeeccCcccccccccccccCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCceEEEEec
Q 014930 202 KPDFYTSDHPFRCYDTEKDTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIH 281 (415)
Q Consensus 202 KP~FF~~~~~fr~vd~~~~~~~~~~~~~l~~g~vY~~G~~~~~~~~~g~~g~~vLYvGDhi~~Di~~~k~~GwrT~lVvp 281 (415)
|| ++ ...++..|. ++||||+. +|+.+++++|.+++.|.+
T Consensus 174 K~------------~K------------------------~~~l~~~~i----~I~IGDs~-~Di~aA~~AGi~~I~v~~ 212 (237)
T PRK11009 174 QY------------TK------------------------TQWLKKKNI----RIFYGDSD-NDITAAREAGARGIRILR 212 (237)
T ss_pred CC------------CH------------------------HHHHHhcCC----eEEEcCCH-HHHHHHHHcCCcEEEEec
Confidence 33 11 123444443 99999999 999999999999999977
Q ss_pred cc
Q 014930 282 EL 283 (415)
Q Consensus 282 EL 283 (415)
-.
T Consensus 213 G~ 214 (237)
T PRK11009 213 AA 214 (237)
T ss_pred CC
Confidence 53
No 62
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=98.59 E-value=5.4e-08 Score=85.00 Aligned_cols=87 Identities=11% Similarity=0.116 Sum_probs=69.1
Q ss_pred chhHHHHHHHHHHcCCeEEEEeCC-ChhhhHHHHHhhhccCCCCC--CCccCCccEEEEcCCCCCCCCCCCCceeeccCc
Q 014930 143 NGQVLQFVKMLREKGKKLFLLTNS-PYYFVDGGMRFMLEDSTGYT--DSWRELFDVVIAQANKPDFYTSDHPFRCYDTEK 219 (415)
Q Consensus 143 ~p~l~~~L~~Lr~~GkklfLlTNS-~~~yt~~vm~~l~~~~~~~g--~~W~~~FD~vi~~a~KP~FF~~~~~fr~vd~~~ 219 (415)
-|++.++|+.||++|.+++++||+ ...++..+++.+.. .+ ..+.++||.++++..|| +++
T Consensus 31 ~~gv~e~L~~Lk~~g~~l~i~Sn~~~~~~~~~~l~~~~~----~~~i~~l~~~f~~~~~~~~~p------------kp~- 93 (128)
T TIGR01681 31 IKEIRDKLQTLKKNGFLLALASYNDDPHVAYELLKIFED----FGIIFPLAEYFDPLTIGYWLP------------KSP- 93 (128)
T ss_pred HHHHHHHHHHHHHCCeEEEEEeCCCCHHHHHHHHHhccc----cccchhhHhhhhhhhhcCCCc------------HHH-
Confidence 479999999999999999999999 89999998887510 00 01678999988887776 221
Q ss_pred ccccccccccccCCeeeccCcHHHHHHHhC--CCCCcEEEEccccccccc
Q 014930 220 DTLAFTKVDAFIPNKIYYHGCLKSFLQITK--WNGPEVIYFGDHLFSDLR 267 (415)
Q Consensus 220 ~~~~~~~~~~l~~g~vY~~G~~~~~~~~~g--~~g~~vLYvGDhi~~Di~ 267 (415)
.+..+++.+| +.+++|+||||+. .|+.
T Consensus 94 --------------------~~~~a~~~lg~~~~p~~~l~igDs~-~n~~ 122 (128)
T TIGR01681 94 --------------------RLVEIALKLNGVLKPKSILFVDDRP-DNNE 122 (128)
T ss_pred --------------------HHHHHHHHhcCCCCcceEEEECCCH-hHHH
Confidence 1357888999 9999999999999 6654
No 63
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=98.57 E-value=7.2e-08 Score=94.96 Aligned_cols=104 Identities=13% Similarity=0.177 Sum_probs=79.1
Q ss_pred chhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhhhccCCCCCCCccC-CccEEEEcCCCCCCCCC---CCCceeeccC
Q 014930 143 NGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRE-LFDVVIAQANKPDFYTS---DHPFRCYDTE 218 (415)
Q Consensus 143 ~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~~-~FD~vi~~a~KP~FF~~---~~~fr~vd~~ 218 (415)
.|++.++|++|++.|++++++||++...+..+++++ ++.+ +||.|++...-+.|..+ ++| +++
T Consensus 189 ~~~~~~~l~~l~~~g~~i~i~T~r~~~~~~~~l~~l---------~~~~~~f~~i~~~~~~~~~~~~~~~~kp----~p~ 255 (300)
T PHA02530 189 NPMVVELVKMYKAAGYEIIVVSGRDGVCEEDTVEWL---------RQTDIWFDDLIGRPPDMHFQREQGDKRP----DDV 255 (300)
T ss_pred ChhHHHHHHHHHhCCCEEEEEeCCChhhHHHHHHHH---------HHcCCchhhhhCCcchhhhcccCCCCCC----cHH
Confidence 579999999999999999999999999999999998 3454 79987776521111110 011 221
Q ss_pred cccccccccccccCCeeeccCcHHHHHHHhCC-CCCcEEEEcccccccccccccCCceEEEEec
Q 014930 219 KDTLAFTKVDAFIPNKIYYHGCLKSFLQITKW-NGPEVIYFGDHLFSDLRGPSKAGWRTAAIIH 281 (415)
Q Consensus 219 ~~~~~~~~~~~l~~g~vY~~G~~~~~~~~~g~-~g~~vLYvGDhi~~Di~~~k~~GwrT~lVvp 281 (415)
-...+++.++. .+++++||||+. .||.+++++|..+++|.|
T Consensus 256 ---------------------~~~~~l~~~~~~~~~~~~~vgD~~-~d~~~a~~~Gi~~i~v~~ 297 (300)
T PHA02530 256 ---------------------VKEEIFWEKIAPKYDVLLAVDDRD-QVVDMWRRIGLECWQVAP 297 (300)
T ss_pred ---------------------HHHHHHHHHhccCceEEEEEcCcH-HHHHHHHHhCCeEEEecC
Confidence 12355565677 568999999999 999999999999999965
No 64
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=98.55 E-value=5.5e-07 Score=85.77 Aligned_cols=99 Identities=17% Similarity=0.247 Sum_probs=86.4
Q ss_pred cccchhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhhhccCCCCCCCccCCccEEEEcC----CCCCCCCCCCCceee
Q 014930 140 LVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQA----NKPDFYTSDHPFRCY 215 (415)
Q Consensus 140 i~k~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~~~FD~vi~~a----~KP~FF~~~~~fr~v 215 (415)
+..-|++.++|+.|++.|+++.+.|||+...+..+++-+ +..++|+.+|+++ .||
T Consensus 85 ~~~~pGv~~~l~~L~~~~i~~avaS~s~~~~~~~~L~~~---------gl~~~f~~~v~~~dv~~~KP------------ 143 (221)
T COG0637 85 LKPIPGVVELLEQLKARGIPLAVASSSPRRAAERVLARL---------GLLDYFDVIVTADDVARGKP------------ 143 (221)
T ss_pred CCCCccHHHHHHHHHhcCCcEEEecCChHHHHHHHHHHc---------cChhhcchhccHHHHhcCCC------------
Confidence 345689999999999999999999999999999999876 5678999988876 788
Q ss_pred ccCcccccccccccccCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCceEEEEec
Q 014930 216 DTEKDTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIH 281 (415)
Q Consensus 216 d~~~~~~~~~~~~~l~~g~vY~~G~~~~~~~~~g~~g~~vLYvGDhi~~Di~~~k~~GwrT~lVvp 281 (415)
+|+ + +-.+.+.+|+.+.+|+.|.|.. ..|.+++++|++++.|..
T Consensus 144 ~Pd--------------------~-yL~Aa~~Lgv~P~~CvviEDs~-~Gi~Aa~aAGm~vv~v~~ 187 (221)
T COG0637 144 APD--------------------I-YLLAAERLGVDPEECVVVEDSP-AGIQAAKAAGMRVVGVPA 187 (221)
T ss_pred CCH--------------------H-HHHHHHHcCCChHHeEEEecch-hHHHHHHHCCCEEEEecC
Confidence 553 1 2367889999999999999999 999999999999999875
No 65
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=98.53 E-value=1.8e-07 Score=83.61 Aligned_cols=91 Identities=14% Similarity=0.035 Sum_probs=72.5
Q ss_pred cccccchhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhhhccCCCCCCCccCCccEEEEcC----CCCCCCCCCCCce
Q 014930 138 RYLVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQA----NKPDFYTSDHPFR 213 (415)
Q Consensus 138 kYi~k~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~~~FD~vi~~a----~KP~FF~~~~~fr 213 (415)
.++..-|++.++|+.|+ .|.++.|+||++.+++..+++.+ +..+ .+|+.|++.. .||.
T Consensus 42 ~~v~l~pG~~e~L~~L~-~~~~l~I~Ts~~~~~~~~il~~l-------~~~~-~~f~~i~~~~d~~~~KP~--------- 103 (148)
T smart00577 42 VYVKKRPGVDEFLKRAS-ELFELVVFTAGLRMYADPVLDLL-------DPKK-YFGYRRLFRDECVFVKGK--------- 103 (148)
T ss_pred EEEEECCCHHHHHHHHH-hccEEEEEeCCcHHHHHHHHHHh-------CcCC-CEeeeEEECccccccCCe---------
Confidence 44555799999999998 57999999999999999999987 3333 4579888765 4552
Q ss_pred eeccCcccccccccccccCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCc
Q 014930 214 CYDTEKDTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGW 274 (415)
Q Consensus 214 ~vd~~~~~~~~~~~~~l~~g~vY~~G~~~~~~~~~g~~g~~vLYvGDhi~~Di~~~k~~Gw 274 (415)
+...++.+|+++++|+||||.. .|+..++.+|.
T Consensus 104 ---------------------------~~k~l~~l~~~p~~~i~i~Ds~-~~~~aa~~ngI 136 (148)
T smart00577 104 ---------------------------YVKDLSLLGRDLSNVIIIDDSP-DSWPFHPENLI 136 (148)
T ss_pred ---------------------------EeecHHHcCCChhcEEEEECCH-HHhhcCccCEE
Confidence 1245677899999999999999 99988776664
No 66
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=98.49 E-value=2e-07 Score=88.14 Aligned_cols=113 Identities=12% Similarity=0.226 Sum_probs=89.6
Q ss_pred CcccccccchhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhhhccCCCCCCCccCCccEEEEcC-CCCCCCCCCCCce
Q 014930 135 DPNRYLVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQA-NKPDFYTSDHPFR 213 (415)
Q Consensus 135 np~kYi~k~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~~~FD~vi~~a-~KP~FF~~~~~fr 213 (415)
.|-.+|.||+.|+.+|..|+..+ ..+-||++-..+.++++.| +..|.||.||+-. .-|. ..+|-
T Consensus 94 LPlq~LkPD~~LRnlLL~l~~r~--k~~FTNa~k~HA~r~Lk~L---------GieDcFegii~~e~~np~----~~~~v 158 (244)
T KOG3109|consen 94 LPLQDLKPDPVLRNLLLSLKKRR--KWIFTNAYKVHAIRILKKL---------GIEDCFEGIICFETLNPI----EKTVV 158 (244)
T ss_pred CcHhhcCCCHHHHHHHHhCcccc--EEEecCCcHHHHHHHHHHh---------ChHHhccceeEeeccCCC----CCcee
Confidence 47777999999999999999887 4567999999999999999 5679999988854 2221 11110
Q ss_pred eeccCcccccccccccccCCeeeccCcHHHHHHHhCCC-CCcEEEEcccccccccccccCCceEEEEeccc
Q 014930 214 CYDTEKDTLAFTKVDAFIPNKIYYHGCLKSFLQITKWN-GPEVIYFGDHLFSDLRGPSKAGWRTAAIIHEL 283 (415)
Q Consensus 214 ~vd~~~~~~~~~~~~~l~~g~vY~~G~~~~~~~~~g~~-g~~vLYvGDhi~~Di~~~k~~GwrT~lVvpEL 283 (415)
+ .| +....+.+++..|+. +.++++|-|++ +-|.++++.||+|++|..|-
T Consensus 159 c-KP-------------------~~~afE~a~k~agi~~p~~t~FfDDS~-~NI~~ak~vGl~tvlv~~~~ 208 (244)
T KOG3109|consen 159 C-KP-------------------SEEAFEKAMKVAGIDSPRNTYFFDDSE-RNIQTAKEVGLKTVLVGREH 208 (244)
T ss_pred e-cC-------------------CHHHHHHHHHHhCCCCcCceEEEcCch-hhHHHHHhccceeEEEEeee
Confidence 0 11 134567888999998 88999999999 99999999999999997764
No 67
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=98.49 E-value=3.5e-08 Score=96.06 Aligned_cols=104 Identities=15% Similarity=0.188 Sum_probs=76.9
Q ss_pred hhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhhhccCCCCCCCccCCccEEEEcC-CCCCCCCCCCCceeeccCcccc
Q 014930 144 GQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQA-NKPDFYTSDHPFRCYDTEKDTL 222 (415)
Q Consensus 144 p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~~~FD~vi~~a-~KP~FF~~~~~fr~vd~~~~~~ 222 (415)
+++...+..|++.|++++++||++..+.......+ ++-.+|+.+.... .+|.++. .| ++
T Consensus 123 ~~l~~a~~~L~~~~~~~~iatn~~~~~~~~~~~~~---------g~g~~~~~i~~~~~~~~~~~g--KP----~p----- 182 (257)
T TIGR01458 123 QILNQAFRLLLDGAKPLLIAIGKGRYYKRKDGLAL---------DVGPFVTALEYATDTKATVVG--KP----SK----- 182 (257)
T ss_pred HHHHHHHHHHHcCCCCEEEEeCCCCCCcCCCCCCC---------CchHHHHHHHHHhCCCceeec--CC----CH-----
Confidence 57888899999999999999999998886544322 4456677655432 3332221 11 11
Q ss_pred cccccccccCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCceEEEEeccc
Q 014930 223 AFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIHEL 283 (415)
Q Consensus 223 ~~~~~~~l~~g~vY~~G~~~~~~~~~g~~g~~vLYvGDhi~~Di~~~k~~GwrT~lVvpEL 283 (415)
.-+..+++.+|.++++++||||++.+||.+|+++||+|++|.+-.
T Consensus 183 ----------------~~~~~~~~~~~~~~~~~~~vGD~~~~Di~~a~~~G~~~i~v~~G~ 227 (257)
T TIGR01458 183 ----------------TFFLEALRATGCEPEEAVMIGDDCRDDVGGAQDCGMRGIQVRTGK 227 (257)
T ss_pred ----------------HHHHHHHHHhCCChhhEEEECCCcHHHHHHHHHcCCeEEEECCCC
Confidence 224567888999999999999999999999999999999997643
No 68
>PHA02597 30.2 hypothetical protein; Provisional
Probab=98.44 E-value=3.7e-07 Score=84.41 Aligned_cols=102 Identities=12% Similarity=0.059 Sum_probs=73.7
Q ss_pred cccchhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhhhccCCCCCCCccCCccEEEEcC-CCCCCCCCCCCceeeccC
Q 014930 140 LVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQA-NKPDFYTSDHPFRCYDTE 218 (415)
Q Consensus 140 i~k~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~~~FD~vi~~a-~KP~FF~~~~~fr~vd~~ 218 (415)
+..-|++.++|++|++.+ +++++||++..........+- ...-|.++|+.|++.. .|| +|
T Consensus 73 ~~~~pG~~e~L~~L~~~~-~~~i~Tn~~~~~~~~~~~~~~-----l~~~f~~~f~~i~~~~~~~~------------kp- 133 (197)
T PHA02597 73 LSAYDDALDVINKLKEDY-DFVAVTALGDSIDALLNRQFN-----LNALFPGAFSEVLMCGHDES------------KE- 133 (197)
T ss_pred ccCCCCHHHHHHHHHhcC-CEEEEeCCccchhHHHHhhCC-----HHHhCCCcccEEEEeccCcc------------cH-
Confidence 455789999999999986 478889988776665554440 0111234677776544 555 22
Q ss_pred cccccccccccccCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccC--CceEEEEeccc
Q 014930 219 KDTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKA--GWRTAAIIHEL 283 (415)
Q Consensus 219 ~~~~~~~~~~~l~~g~vY~~G~~~~~~~~~g~~g~~vLYvGDhi~~Di~~~k~~--GwrT~lVvpEL 283 (415)
..+..+++.+| +++++||||.. .||.+|+++ |+.|+.|.+.-
T Consensus 134 --------------------~~~~~a~~~~~--~~~~v~vgDs~-~di~aA~~a~~Gi~~i~~~~~~ 177 (197)
T PHA02597 134 --------------------KLFIKAKEKYG--DRVVCFVDDLA-HNLDAAHEALSQLPVIHMLRGE 177 (197)
T ss_pred --------------------HHHHHHHHHhC--CCcEEEeCCCH-HHHHHHHHHHcCCcEEEecchh
Confidence 12357788888 78899999999 889999998 99999998873
No 69
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=98.43 E-value=5.1e-07 Score=82.88 Aligned_cols=107 Identities=11% Similarity=0.001 Sum_probs=75.6
Q ss_pred ccchhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhhhccCCCCCCCccCCccEEEEcC--CCCCCCCCCCCceeeccC
Q 014930 141 VKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQA--NKPDFYTSDHPFRCYDTE 218 (415)
Q Consensus 141 ~k~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~~~FD~vi~~a--~KP~FF~~~~~fr~vd~~ 218 (415)
...|++.++|+.|+++|.+++|+||+...+++.++..+ | +..+|+.++... .+|. ..++....+
T Consensus 80 ~~~~g~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~-------g--~~~~~~~~~~~~~~g~~~----p~~~~~~~~- 145 (201)
T TIGR01491 80 SLRDYAEELVRWLKEKGLKTAIVSGGIMCLAKKVAEKL-------N--PDYVYSNELVFDEKGFIQ----PDGIVRVTF- 145 (201)
T ss_pred CCCccHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHh-------C--CCeEEEEEEEEcCCCeEe----cceeeEEcc-
Confidence 45689999999999999999999999999999999887 3 345666544432 2220 001000000
Q ss_pred cccccccccccccCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCceEEE
Q 014930 219 KDTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAA 278 (415)
Q Consensus 219 ~~~~~~~~~~~l~~g~vY~~G~~~~~~~~~g~~g~~vLYvGDhi~~Di~~~k~~GwrT~l 278 (415)
..+ +..+..+++.+|+++++++||||+. +|+..++.+|+..++
T Consensus 146 -----------~~k-----~~~~~~~~~~~~~~~~~~i~iGDs~-~D~~~a~~ag~~~a~ 188 (201)
T TIGR01491 146 -----------DNK-----GEAVERLKRELNPSLTETVAVGDSK-NDLPMFEVADISISL 188 (201)
T ss_pred -----------ccH-----HHHHHHHHHHhCCCHHHEEEEcCCH-hHHHHHHhcCCeEEE
Confidence 000 1134567778899999999999998 999999999996554
No 70
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=98.38 E-value=1.5e-07 Score=92.49 Aligned_cols=103 Identities=18% Similarity=0.233 Sum_probs=69.7
Q ss_pred hhHHHHHHHHHHcCCeEEEEeCCChhhhHH-HHHhhhccCCCCCCCccCCccEEEEc-CCCCCCCCCCCCceeeccCccc
Q 014930 144 GQVLQFVKMLREKGKKLFLLTNSPYYFVDG-GMRFMLEDSTGYTDSWRELFDVVIAQ-ANKPDFYTSDHPFRCYDTEKDT 221 (415)
Q Consensus 144 p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~-vm~~l~~~~~~~g~~W~~~FD~vi~~-a~KP~FF~~~~~fr~vd~~~~~ 221 (415)
+++..+|+.|++.|. ++++||++..+... ++... +.-.+|+.+... ..+|.+.. .| ++
T Consensus 146 ~~i~~~l~~L~~~g~-~~i~Tn~d~~~~~~~~~~~~---------~~g~~~~~i~~~~g~~~~~~g--KP----~p---- 205 (279)
T TIGR01452 146 AKLREACAHLREPGC-LFVATNRDPWHPLSDGSRTP---------GTGSLVAAIETASGRQPLVVG--KP----SP---- 205 (279)
T ss_pred HHHHHHHHHHhcCCC-EEEEeCCCCCCCCcCCCccc---------ChHHHHHHHHHHhCCceeccC--CC----CH----
Confidence 588999999999887 89999999766422 11111 122345544321 12221111 01 22
Q ss_pred ccccccccccCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCceEEEEeccc
Q 014930 222 LAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIHEL 283 (415)
Q Consensus 222 ~~~~~~~~l~~g~vY~~G~~~~~~~~~g~~g~~vLYvGDhi~~Di~~~k~~GwrT~lVvpEL 283 (415)
-.+..+++.+|.++++++||||.+.+||.+|+++||+|++|.+-.
T Consensus 206 -----------------~~~~~~~~~~~~~~~~~lmIGD~~~tDI~~A~~aGi~si~V~~G~ 250 (279)
T TIGR01452 206 -----------------YMFECITENFSIDPARTLMVGDRLETDILFGHRCGMTTVLVLSGV 250 (279)
T ss_pred -----------------HHHHHHHHHhCCChhhEEEECCChHHHHHHHHHcCCcEEEECCCC
Confidence 123567888999999999999999999999999999999997643
No 71
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=98.35 E-value=8.5e-07 Score=83.09 Aligned_cols=112 Identities=21% Similarity=0.180 Sum_probs=74.7
Q ss_pred cccchhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCCceeeccCc
Q 014930 140 LVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDTEK 219 (415)
Q Consensus 140 i~k~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~~~FD~vi~~a~KP~FF~~~~~fr~vd~~~ 219 (415)
+...|++.++|+.|+++|.++.++||+...++..++..+ ++..+|+..+... ...++. .. .
T Consensus 84 ~~~~~g~~~~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~---------~i~~~~~~~~~~~--~~~~~~------~~--~ 144 (219)
T TIGR00338 84 LPLTEGAEELVKTLKEKGYKVAVISGGFDLFAEHVKDKL---------GLDAAFANRLEVE--DGKLTG------LV--E 144 (219)
T ss_pred CCcCCCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHc---------CCCceEeeEEEEE--CCEEEE------Ee--c
Confidence 456789999999999999999999999999999999876 3444564322211 000000 00 0
Q ss_pred ccccccccccccCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCceEEEEec
Q 014930 220 DTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIH 281 (415)
Q Consensus 220 ~~~~~~~~~~l~~g~vY~~G~~~~~~~~~g~~g~~vLYvGDhi~~Di~~~k~~GwrT~lVvp 281 (415)
|. .... . .....+..+++..++++++|+||||+. +|+.+++.+|+.. ++-+
T Consensus 145 ~~----~~~~-~----~k~~~~~~~~~~~~~~~~~~i~iGDs~-~Di~aa~~ag~~i-~~~~ 195 (219)
T TIGR00338 145 GP----IVDA-S----YKGKTLLILLRKEGISPENTVAVGDGA-NDLSMIKAAGLGI-AFNA 195 (219)
T ss_pred Cc----ccCC-c----ccHHHHHHHHHHcCCCHHHEEEEECCH-HHHHHHHhCCCeE-EeCC
Confidence 00 0000 0 001234567888899999999999997 9999999999975 4443
No 72
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=98.33 E-value=2.7e-06 Score=83.73 Aligned_cols=44 Identities=25% Similarity=0.391 Sum_probs=38.3
Q ss_pred HHHHHHHhCCCCCcEEEEcccccccccccccCCceEEEEeccch
Q 014930 241 LKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIHELE 284 (415)
Q Consensus 241 ~~~~~~~~g~~g~~vLYvGDhi~~Di~~~k~~GwrT~lVvpEL~ 284 (415)
.+.+++.++...++|++|||++.+||..++++||.|++|.-=..
T Consensus 196 ~~~al~~~~~~~~~~~mVGD~~~TDI~~a~~~G~~t~LV~TGv~ 239 (269)
T COG0647 196 YEAALEKLGLDRSEVLMVGDRLDTDILGAKAAGLDTLLVLTGVS 239 (269)
T ss_pred HHHHHHHhCCCcccEEEEcCCchhhHHHHHHcCCCEEEEccCCC
Confidence 35677888888889999999999999999999999999976443
No 73
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=98.29 E-value=2.1e-06 Score=77.76 Aligned_cols=110 Identities=14% Similarity=0.277 Sum_probs=69.2
Q ss_pred cccchhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCCceeeccCc
Q 014930 140 LVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDTEK 219 (415)
Q Consensus 140 i~k~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~~~FD~vi~~a~KP~FF~~~~~fr~vd~~~ 219 (415)
+...|++.++|+.|++.|.++.++||+...++..+++.+ +|.++||.|++.... |.+..-+ .+.+.
T Consensus 71 ~~l~~g~~~ll~~l~~~g~~~~i~S~~~~~~~~~~l~~~---------~l~~~f~~i~~~~~~---~~~~g~~-~~~~~- 136 (188)
T TIGR01489 71 APIDPGFKEFIAFIKEHGIDFIVISDGNDFFIDPVLEGI---------GEKDVFIEIYSNPAS---FDNDGRH-IVWPH- 136 (188)
T ss_pred CCCCccHHHHHHHHHHcCCcEEEEeCCcHHHHHHHHHHc---------CChhheeEEeccCce---ECCCCcE-EEecC-
Confidence 455688999999999999999999999999999998876 678999988864321 1111000 00110
Q ss_pred ccccccccccccCCeeeccCcHH-HHHHHhCCC-CCcEEEEcccccccccccccCC
Q 014930 220 DTLAFTKVDAFIPNKIYYHGCLK-SFLQITKWN-GPEVIYFGDHLFSDLRGPSKAG 273 (415)
Q Consensus 220 ~~~~~~~~~~l~~g~vY~~G~~~-~~~~~~g~~-g~~vLYvGDhi~~Di~~~k~~G 273 (415)
+......+ ..|..+ ..++.+... +.+++||||.. +|+.+|+.++
T Consensus 137 ------~~~~~~~~---~~g~~K~~~~~~~~~~~~~~~i~iGD~~-~D~~aa~~~d 182 (188)
T TIGR01489 137 ------HCHGCCSC---PCGCCKGKVIHKLSEPKYQHIIYIGDGV-TDVCPAKLSD 182 (188)
T ss_pred ------CCCccCcC---CCCCCHHHHHHHHHhhcCceEEEECCCc-chhchHhcCC
Confidence 00000000 011111 122222223 78999999999 9999887764
No 74
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=98.28 E-value=4.4e-07 Score=87.21 Aligned_cols=100 Identities=12% Similarity=0.147 Sum_probs=69.1
Q ss_pred hhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCCceeeccCccccc
Q 014930 144 GQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDTEKDTLA 223 (415)
Q Consensus 144 p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~~~FD~vi~~a~KP~FF~~~~~fr~vd~~~~~~~ 223 (415)
|++..+|+.|++.|.++ ++||++..+....+..+ + .-.+|+.+...+.+|.+.. .| ++
T Consensus 141 ~~~~~~l~~l~~~g~~~-i~tN~d~~~~~~~~~~~-------~--~g~~~~~i~~~g~~~~~~g--KP----~~------ 198 (242)
T TIGR01459 141 DEFDELFAPIVARKIPN-ICANPDRGINQHGIYRY-------G--AGYYAELIKQLGGKVIYSG--KP----YP------ 198 (242)
T ss_pred HHHHHHHHHHHhCCCcE-EEECCCEeccCCCceEe-------c--ccHHHHHHHHhCCcEecCC--CC----CH------
Confidence 68889999998899985 89999999997655433 2 2234554311112231111 11 22
Q ss_pred ccccccccCCeeeccCcHHHHHHHhCCC-CCcEEEEcccccccccccccCCceEEEEe
Q 014930 224 FTKVDAFIPNKIYYHGCLKSFLQITKWN-GPEVIYFGDHLFSDLRGPSKAGWRTAAII 280 (415)
Q Consensus 224 ~~~~~~l~~g~vY~~G~~~~~~~~~g~~-g~~vLYvGDhi~~Di~~~k~~GwrT~lVv 280 (415)
..+..+++.+|.. .++++||||.+.+||.+|+++|++|++|.
T Consensus 199 ---------------~~~~~~~~~~~~~~~~~~~~vGD~~~~Di~~a~~~G~~~i~v~ 241 (242)
T TIGR01459 199 ---------------AIFHKALKECSNIPKNRMLMVGDSFYTDILGANRLGIDTALVL 241 (242)
T ss_pred ---------------HHHHHHHHHcCCCCcccEEEECCCcHHHHHHHHHCCCeEEEEe
Confidence 2245677888865 56899999998899999999999999984
No 75
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=98.27 E-value=3e-07 Score=83.05 Aligned_cols=82 Identities=18% Similarity=0.171 Sum_probs=65.9
Q ss_pred cccchhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhhhccCCCCCCCccCCccEEEEcC----CCCCCCCCCCCceee
Q 014930 140 LVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQA----NKPDFYTSDHPFRCY 215 (415)
Q Consensus 140 i~k~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~~~FD~vi~~a----~KP~FF~~~~~fr~v 215 (415)
+..-|++.++|+ ++.|+||++..++...++.+ ++.++||.|++.. .||
T Consensus 89 ~~~~~g~~~~L~-------~~~i~Tn~~~~~~~~~l~~~---------~l~~~fd~v~~~~~~~~~KP------------ 140 (175)
T TIGR01493 89 LPPWPDSAAALA-------RVAILSNASHWAFDQFAQQA---------GLPWYFDRAFSVDTVRAYKP------------ 140 (175)
T ss_pred CCCCCchHHHHH-------HHhhhhCCCHHHHHHHHHHC---------CCHHHHhhhccHhhcCCCCC------------
Confidence 345688999888 37899999999999988876 5778999876654 577
Q ss_pred ccCcccccccccccccCCeeeccCcHHHHHHHhCCCCCcEEEEccccccccccccc
Q 014930 216 DTEKDTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSK 271 (415)
Q Consensus 216 d~~~~~~~~~~~~~l~~g~vY~~G~~~~~~~~~g~~g~~vLYvGDhi~~Di~~~k~ 271 (415)
+| -.+..+++.+|+++++|+||||+. .||.+|++
T Consensus 141 ~p---------------------~~f~~~~~~~~~~p~~~l~vgD~~-~Di~~A~~ 174 (175)
T TIGR01493 141 DP---------------------VVYELVFDTVGLPPDRVLMVAAHQ-WDLIGARK 174 (175)
T ss_pred CH---------------------HHHHHHHHHHCCCHHHeEeEecCh-hhHHHHhc
Confidence 43 224578889999999999999996 89988765
No 76
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=98.27 E-value=7.7e-07 Score=81.78 Aligned_cols=108 Identities=20% Similarity=0.205 Sum_probs=77.1
Q ss_pred HHhhcchhhHHHHhcC-cccccccchhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhhhccCCCCCCCccCCccEEEE
Q 014930 120 QHVHRRGLVHRGILSD-PNRYLVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIA 198 (415)
Q Consensus 120 ~~~h~~G~lk~~v~~n-p~kYi~k~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~~~FD~vi~ 198 (415)
|-|+.+|++.-.-... +.+|=.+|. .-+..|+++|+++.++||++...++..++.+ .+.++|+.+
T Consensus 15 dGv~tdg~~~~~~~g~~~~~~~~~D~---~~~~~L~~~Gi~laIiT~k~~~~~~~~l~~l---------gi~~~f~~~-- 80 (169)
T TIGR02726 15 DGVMTDGRIVINDEGIESRNFDIKDG---MGVIVLQLCGIDVAIITSKKSGAVRHRAEEL---------KIKRFHEGI-- 80 (169)
T ss_pred ceeeECCeEEEcCCCcEEEEEecchH---HHHHHHHHCCCEEEEEECCCcHHHHHHHHHC---------CCcEEEecC--
Confidence 4455555443221111 333444443 2366788999999999999999999999998 466777742
Q ss_pred cCCCCCCCCCCCCceeeccCcccccccccccccCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCceEEE
Q 014930 199 QANKPDFYTSDHPFRCYDTEKDTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAA 278 (415)
Q Consensus 199 ~a~KP~FF~~~~~fr~vd~~~~~~~~~~~~~l~~g~vY~~G~~~~~~~~~g~~g~~vLYvGDhi~~Di~~~k~~GwrT~l 278 (415)
|| +| -.+..+++.+|+++++|+||||.. .|+..++.+|+.-+.
T Consensus 81 ---kp------------kp---------------------~~~~~~~~~l~~~~~ev~~iGD~~-nDi~~~~~ag~~~am 123 (169)
T TIGR02726 81 ---KK------------KT---------------------EPYAQMLEEMNISDAEVCYVGDDL-VDLSMMKRVGLAVAV 123 (169)
T ss_pred ---CC------------CH---------------------HHHHHHHHHcCcCHHHEEEECCCH-HHHHHHHHCCCeEEC
Confidence 55 22 124688889999999999999998 999999999976553
No 77
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=98.21 E-value=2e-06 Score=86.37 Aligned_cols=89 Identities=12% Similarity=0.061 Sum_probs=72.0
Q ss_pred chhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCCceeeccCcccc
Q 014930 143 NGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDTEKDTL 222 (415)
Q Consensus 143 ~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~~~FD~vi~~a~KP~FF~~~~~fr~vd~~~~~~ 222 (415)
-|++.++|+.|++.|+++.++||++...+..+++.- +.-....++|+.+++. .|| ++
T Consensus 33 ~~~~~e~L~~L~~~Gi~lai~S~n~~~~a~~~l~~~-----~~~~~~~~~f~~~~~~-~~p------------k~----- 89 (320)
T TIGR01686 33 HKTLQEKIKTLKKQGFLLALASKNDEDDAKKVFERR-----KDFILQAEDFDARSIN-WGP------------KS----- 89 (320)
T ss_pred HHHHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHhC-----ccccCcHHHeeEEEEe-cCc------------hH-----
Confidence 478999999999999999999999999999988860 0001455789987665 677 33
Q ss_pred cccccccccCCeeeccCcHHHHHHHhCCCCCcEEEEccccccccccccc
Q 014930 223 AFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSK 271 (415)
Q Consensus 223 ~~~~~~~l~~g~vY~~G~~~~~~~~~g~~g~~vLYvGDhi~~Di~~~k~ 271 (415)
-++..+++.+|+.+++++||||+. .|+..++.
T Consensus 90 ----------------~~i~~~~~~l~i~~~~~vfidD~~-~d~~~~~~ 121 (320)
T TIGR01686 90 ----------------ESLRKIAKKLNLGTDSFLFIDDNP-AERANVKI 121 (320)
T ss_pred ----------------HHHHHHHHHhCCCcCcEEEECCCH-HHHHHHHH
Confidence 346688889999999999999999 79987765
No 78
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=98.20 E-value=4e-06 Score=79.17 Aligned_cols=103 Identities=14% Similarity=0.227 Sum_probs=69.7
Q ss_pred cccchhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhhhccCCCCCCCccCCc--cEEEEcC----CCCCCCCCCCCce
Q 014930 140 LVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELF--DVVIAQA----NKPDFYTSDHPFR 213 (415)
Q Consensus 140 i~k~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~~~F--D~vi~~a----~KP~FF~~~~~fr 213 (415)
+...|++.++|+.|+++|.+++++||+...++..+++.++. . ...+ +..+.+. .||
T Consensus 73 ~~l~pG~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~~~------~--~~i~~n~~~~~~~~~~~~kp---------- 134 (219)
T PRK09552 73 AEIREGFHEFVQFVKENNIPFYVVSGGMDFFVYPLLQGLIP------K--EQIYCNGSDFSGEYITITWP---------- 134 (219)
T ss_pred CCcCcCHHHHHHHHHHcCCeEEEECCCcHHHHHHHHHHhCC------c--CcEEEeEEEecCCeeEEecc----------
Confidence 55679999999999999999999999999999999987531 0 0111 2222211 233
Q ss_pred eeccCcccccccccccccCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCc
Q 014930 214 CYDTEKDTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGW 274 (415)
Q Consensus 214 ~vd~~~~~~~~~~~~~l~~g~vY~~G~~~~~~~~~g~~g~~vLYvGDhi~~Di~~~k~~Gw 274 (415)
+|..+. . ...++.+-..+++.++..+.+|+||||.. +|+.+++.+|+
T Consensus 135 --~p~~~~--------~---~~~~~~~K~~~l~~~~~~~~~~i~iGDs~-~Di~aa~~Ag~ 181 (219)
T PRK09552 135 --HPCDEH--------C---QNHCGCCKPSLIRKLSDTNDFHIVIGDSI-TDLEAAKQADK 181 (219)
T ss_pred --CCcccc--------c---cccCCCchHHHHHHhccCCCCEEEEeCCH-HHHHHHHHCCc
Confidence 111000 0 00011122357778888899999999999 99999999999
No 79
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=98.19 E-value=2.6e-06 Score=90.95 Aligned_cols=93 Identities=18% Similarity=0.237 Sum_probs=72.3
Q ss_pred hcCcccccccchhHHHHHHHHHHcCCeEEEEeCCCh------------hhhHHHHHhhhccCCCCCCCccCCccEEEEcC
Q 014930 133 LSDPNRYLVKNGQVLQFVKMLREKGKKLFLLTNSPY------------YFVDGGMRFMLEDSTGYTDSWRELFDVVIAQA 200 (415)
Q Consensus 133 ~~np~kYi~k~p~l~~~L~~Lr~~GkklfLlTNS~~------------~yt~~vm~~l~~~~~~~g~~W~~~FD~vi~~a 200 (415)
..||+.+....|++++.|++|+++|.+++|+||... ..+..++..+ |.+ ||++++..
T Consensus 189 ~~~~~d~~~l~pgV~e~L~~L~~~Gy~IvIvTNQ~gI~~G~~~~~~~~~ki~~iL~~l-------gip----fdviia~~ 257 (526)
T TIGR01663 189 PKGPDDWQIIFPEIPEKLKELEADGFKICIFTNQGGIARGKINADDFKAKIEAIVAKL-------GVP----FQVFIAIG 257 (526)
T ss_pred CCCHHHeeecccCHHHHHHHHHHCCCEEEEEECCcccccCcccHHHHHHHHHHHHHHc-------CCc----eEEEEeCC
Confidence 356777766789999999999999999999999887 3566677665 433 89877654
Q ss_pred ----CCCCCCCCCCCceeeccCcccccccccccccCCeeeccCcHHHHHHHhC----CCCCcEEEEcccccccccccc
Q 014930 201 ----NKPDFYTSDHPFRCYDTEKDTLAFTKVDAFIPNKIYYHGCLKSFLQITK----WNGPEVIYFGDHLFSDLRGPS 270 (415)
Q Consensus 201 ----~KP~FF~~~~~fr~vd~~~~~~~~~~~~~l~~g~vY~~G~~~~~~~~~g----~~g~~vLYvGDhi~~Di~~~k 270 (415)
+|| ++ |.+..+++.++ ++.++++||||.. +|+.+++
T Consensus 258 ~~~~RKP------------~p---------------------Gm~~~a~~~~~~~~~Id~~~S~~VGDaa-gr~~~g~ 301 (526)
T TIGR01663 258 AGFYRKP------------LT---------------------GMWDHLKEEANDGTEIQEDDCFFVGDAA-GRPANGK 301 (526)
T ss_pred CCCCCCC------------CH---------------------HHHHHHHHhcCcccCCCHHHeEEeCCcc-cchHHHH
Confidence 567 33 66778887774 7889999999999 9986543
No 80
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=98.16 E-value=2.9e-06 Score=78.19 Aligned_cols=85 Identities=20% Similarity=0.232 Sum_probs=71.8
Q ss_pred chhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhhhccCCCCCCCccCCccEEEEcCC--CCCCCCCCCCceeeccCcc
Q 014930 143 NGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQAN--KPDFYTSDHPFRCYDTEKD 220 (415)
Q Consensus 143 ~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~~~FD~vi~~a~--KP~FF~~~~~fr~vd~~~~ 220 (415)
-|++.++|+.|+++|+++.++|+.+...+..+++.+ |. ++.+|.... || ++
T Consensus 129 ~~~~~~~l~~L~~~Gi~~~i~TGD~~~~a~~~~~~l-------gi-----~~~~v~a~~~~kP------------~~--- 181 (215)
T PF00702_consen 129 RPGAKEALQELKEAGIKVAILTGDNESTASAIAKQL-------GI-----FDSIVFARVIGKP------------EP--- 181 (215)
T ss_dssp HTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHT-------TS-----CSEEEEESHETTT------------HH---
T ss_pred hhhhhhhhhhhhccCcceeeeecccccccccccccc-------cc-----ccccccccccccc------------cc---
Confidence 479999999999999999999999999999999987 33 676677766 88 33
Q ss_pred cccccccccccCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCC
Q 014930 221 TLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAG 273 (415)
Q Consensus 221 ~~~~~~~~~l~~g~vY~~G~~~~~~~~~g~~g~~vLYvGDhi~~Di~~~k~~G 273 (415)
-.+..+++.+++++.+|+||||.+ +|+.+.+++|
T Consensus 182 ------------------k~~~~~i~~l~~~~~~v~~vGDg~-nD~~al~~Ag 215 (215)
T PF00702_consen 182 ------------------KIFLRIIKELQVKPGEVAMVGDGV-NDAPALKAAG 215 (215)
T ss_dssp ------------------HHHHHHHHHHTCTGGGEEEEESSG-GHHHHHHHSS
T ss_pred ------------------hhHHHHHHHHhcCCCEEEEEccCH-HHHHHHHhCc
Confidence 123578999999999999999999 9998877665
No 81
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=98.15 E-value=2.3e-06 Score=76.98 Aligned_cols=85 Identities=16% Similarity=0.225 Sum_probs=68.0
Q ss_pred HHHHHHHcCCeEEEEeCCChhhhHHHHHhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCCceeeccCcccccccccc
Q 014930 149 FVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDTEKDTLAFTKVD 228 (415)
Q Consensus 149 ~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~~~FD~vi~~a~KP~FF~~~~~fr~vd~~~~~~~~~~~~ 228 (415)
.|++|+++|.+++|+||++...+..++..+ ++.++|+. .|| ++
T Consensus 36 ~i~~Lk~~G~~i~IvTn~~~~~~~~~l~~~---------gi~~~~~~-----~~~------------k~----------- 78 (154)
T TIGR01670 36 GIRCALKSGIEVAIITGRKAKLVEDRCKTL---------GITHLYQG-----QSN------------KL----------- 78 (154)
T ss_pred HHHHHHHCCCEEEEEECCCCHHHHHHHHHc---------CCCEEEec-----ccc------------hH-----------
Confidence 799999999999999999999999988887 34455542 234 11
Q ss_pred cccCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCceEEEEecc
Q 014930 229 AFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIHE 282 (415)
Q Consensus 229 ~l~~g~vY~~G~~~~~~~~~g~~g~~vLYvGDhi~~Di~~~k~~GwrT~lVvpE 282 (415)
-.+..+++.+|+++++|+||||+. +|+..++.+|.. ++|.+-
T Consensus 79 ----------~~~~~~~~~~~~~~~~~~~vGDs~-~D~~~~~~ag~~-~~v~~~ 120 (154)
T TIGR01670 79 ----------IAFSDILEKLALAPENVAYIGDDL-IDWPVMEKVGLS-VAVADA 120 (154)
T ss_pred ----------HHHHHHHHHcCCCHHHEEEECCCH-HHHHHHHHCCCe-EecCCc
Confidence 124578889999999999999999 999999999985 777653
No 82
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=98.14 E-value=2e-06 Score=79.51 Aligned_cols=83 Identities=19% Similarity=0.260 Sum_probs=65.4
Q ss_pred HHHHHHHHcCCeEEEEeCCChhhhHHHHHhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCCceeeccCccccccccc
Q 014930 148 QFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDTEKDTLAFTKV 227 (415)
Q Consensus 148 ~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~~~FD~vi~~a~KP~FF~~~~~fr~vd~~~~~~~~~~~ 227 (415)
..++.|+++|.++.++||.+...+..+++.+ | +..+|+ +.+| .
T Consensus 55 ~~i~~L~~~Gi~v~I~T~~~~~~v~~~l~~l-------g--l~~~f~-----g~~~------------k----------- 97 (183)
T PRK09484 55 YGIRCLLTSGIEVAIITGRKSKLVEDRMTTL-------G--ITHLYQ-----GQSN------------K----------- 97 (183)
T ss_pred HHHHHHHHCCCEEEEEeCCCcHHHHHHHHHc-------C--Cceeec-----CCCc------------H-----------
Confidence 3577888999999999999999999999887 3 334443 2222 0
Q ss_pred ccccCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCceEEEE
Q 014930 228 DAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAI 279 (415)
Q Consensus 228 ~~l~~g~vY~~G~~~~~~~~~g~~g~~vLYvGDhi~~Di~~~k~~GwrT~lV 279 (415)
...+..+++.+|+++++|+||||++ .|+..++++|.. ++|
T Consensus 98 ----------~~~l~~~~~~~gl~~~ev~~VGDs~-~D~~~a~~aG~~-~~v 137 (183)
T PRK09484 98 ----------LIAFSDLLEKLAIAPEQVAYIGDDL-IDWPVMEKVGLS-VAV 137 (183)
T ss_pred ----------HHHHHHHHHHhCCCHHHEEEECCCH-HHHHHHHHCCCe-Eec
Confidence 1235688999999999999999999 999999999998 444
No 83
>PTZ00445 p36-lilke protein; Provisional
Probab=98.05 E-value=1.2e-05 Score=76.14 Aligned_cols=143 Identities=20% Similarity=0.241 Sum_probs=103.1
Q ss_pred HHHHHHHHhhcchhhHHHHhcCccccccc-chhHHHHHHHHHHcCCeEEEEeCCChhh-----------hHHHHHhhhcc
Q 014930 114 DVNRAIQHVHRRGLVHRGILSDPNRYLVK-NGQVLQFVKMLREKGKKLFLLTNSPYYF-----------VDGGMRFMLED 181 (415)
Q Consensus 114 DV~~av~~~h~~G~lk~~v~~np~kYi~k-~p~l~~~L~~Lr~~GkklfLlTNS~~~y-----------t~~vm~~l~~~ 181 (415)
|.-..+--+|..|...+. +++..++.. .|++..|+.+|+++|++++++|=|+..- -..+.++++..
T Consensus 49 D~DnTlI~~HsgG~~~~~--~~~~~~~~~~tpefk~~~~~l~~~~I~v~VVTfSd~~~~~~~~~~~~Isg~~li~~~lk~ 126 (219)
T PTZ00445 49 DFDLTMITKHSGGYIDPD--NDDIRVLTSVTPDFKILGKRLKNSNIKISVVTFSDKELIPSENRPRYISGDRMVEAALKK 126 (219)
T ss_pred cchhhhhhhhcccccCCC--cchhhhhccCCHHHHHHHHHHHHCCCeEEEEEccchhhccccCCcceechHHHHHHHHHh
Confidence 333445568988876665 678888887 5899999999999999999999998854 12233333321
Q ss_pred CCCCCCCccCCccEEEEcCCCCCCCCCCCCce---eeccCcccccccccccccCCeeeccCcHHHHHHHhCCCCCcEEEE
Q 014930 182 STGYTDSWRELFDVVIAQANKPDFYTSDHPFR---CYDTEKDTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYF 258 (415)
Q Consensus 182 ~~~~g~~W~~~FD~vi~~a~KP~FF~~~~~fr---~vd~~~~~~~~~~~~~l~~g~vY~~G~~~~~~~~~g~~g~~vLYv 258 (415)
+ .--|++..+.|-=|.|..+..-++ ...|+.+ .+.| .++.+++..|+.++++|+|
T Consensus 127 s-------~~~~~i~~~~~yyp~~w~~p~~y~~~gl~KPdp~------------iK~y---Hle~ll~~~gl~peE~LFI 184 (219)
T PTZ00445 127 S-------KCDFKIKKVYAYYPKFWQEPSDYRPLGLDAPMPL------------DKSY---HLKQVCSDFNVNPDEILFI 184 (219)
T ss_pred c-------CccceeeeeeeeCCcccCChhhhhhhcccCCCcc------------chHH---HHHHHHHHcCCCHHHeEee
Confidence 1 123788888888898888764332 2222210 0012 1378999999999999999
Q ss_pred cccccccccccccCCceEEEEec
Q 014930 259 GDHLFSDLRGPSKAGWRTAAIIH 281 (415)
Q Consensus 259 GDhi~~Di~~~k~~GwrT~lVvp 281 (415)
=|.. ..|.+|++.||.|+.+..
T Consensus 185 DD~~-~NVeaA~~lGi~ai~f~~ 206 (219)
T PTZ00445 185 DDDM-NNCKNALKEGYIALHVTG 206 (219)
T ss_pred cCCH-HHHHHHHHCCCEEEEcCC
Confidence 9998 889999999999999864
No 84
>PLN02954 phosphoserine phosphatase
Probab=98.05 E-value=1.2e-05 Score=75.51 Aligned_cols=113 Identities=13% Similarity=0.167 Sum_probs=67.9
Q ss_pred cchhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCCceeeccCccc
Q 014930 142 KNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDTEKDT 221 (415)
Q Consensus 142 k~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~~~FD~vi~~a~KP~FF~~~~~fr~vd~~~~~ 221 (415)
..|++.++|+.|+++|.++.|+||+...++..+++.+ |.+-..+|+..+..... +... +.. ..++..
T Consensus 85 l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~~l~~~-------gi~~~~~~~~~~~~~~~-g~~~-g~~--~~~~~~-- 151 (224)
T PLN02954 85 LSPGIPELVKKLRARGTDVYLVSGGFRQMIAPVAAIL-------GIPPENIFANQILFGDS-GEYA-GFD--ENEPTS-- 151 (224)
T ss_pred CCccHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHh-------CCChhhEEEeEEEEcCC-CcEE-Ccc--CCCccc--
Confidence 4689999999999999999999999999999999986 33322355432221100 0000 000 000000
Q ss_pred ccccccccccCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCceEEEEec
Q 014930 222 LAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIH 281 (415)
Q Consensus 222 ~~~~~~~~l~~g~vY~~G~~~~~~~~~g~~g~~vLYvGDhi~~Di~~~k~~GwrT~lVvp 281 (415)
.. +++ .-.+..+++..|. ++|+||||+. +|+.+++..|..+++...
T Consensus 152 -----~~---~~K---~~~i~~~~~~~~~--~~~i~iGDs~-~Di~aa~~~~~~~~~~~~ 197 (224)
T PLN02954 152 -----RS---GGK---AEAVQHIKKKHGY--KTMVMIGDGA-TDLEARKPGGADLFIGYG 197 (224)
T ss_pred -----CC---ccH---HHHHHHHHHHcCC--CceEEEeCCH-HHHHhhhcCCCCEEEecC
Confidence 00 000 0112345555553 6899999999 899887777777665433
No 85
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=97.98 E-value=2.5e-05 Score=73.58 Aligned_cols=121 Identities=13% Similarity=0.170 Sum_probs=75.1
Q ss_pred HHHHhhcchhhHHHHhcCcccccccchhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhhhccCCCCCCCccCCc---c
Q 014930 118 AIQHVHRRGLVHRGILSDPNRYLVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELF---D 194 (415)
Q Consensus 118 av~~~h~~G~lk~~v~~np~kYi~k~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~~~F---D 194 (415)
.+..++.+. ++++.+-..+.+.-.|++.++|+.|++.|.+++|+||+...++..+++.+. . .+.+ +
T Consensus 49 ~~~~~~~~~--~~~~~~~~~~~~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~~-------~--~~~i~~n~ 117 (214)
T TIGR03333 49 MFGLLPSSL--KEEITSFVLETAEIREGFREFVAFINEHGIPFYVISGGMDFFVYPLLEGIV-------E--KDRIYCNE 117 (214)
T ss_pred HHhhCCCch--HHHHHHHHHhcCcccccHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHhhC-------C--cccEEece
Confidence 344455443 233333222346678999999999999999999999999999999988762 1 1222 2
Q ss_pred EEEEcC----CCCCCCCCCCCceeeccCcccccccccccccCCeeeccCcH-HHHHHHhCCCCCcEEEEccccccccccc
Q 014930 195 VVIAQA----NKPDFYTSDHPFRCYDTEKDTLAFTKVDAFIPNKIYYHGCL-KSFLQITKWNGPEVIYFGDHLFSDLRGP 269 (415)
Q Consensus 195 ~vi~~a----~KP~FF~~~~~fr~vd~~~~~~~~~~~~~l~~g~vY~~G~~-~~~~~~~g~~g~~vLYvGDhi~~Di~~~ 269 (415)
+++.+. .|| ++.. ...+ --+ |.. ..+++.++..+.+|+||||.. +|+.++
T Consensus 118 ~~~~~~~~~~~~p------------~~~~----------~~~~-~~c-g~~K~~~l~~~~~~~~~~i~iGDg~-~D~~~a 172 (214)
T TIGR03333 118 ADFSNEYIHIDWP------------HPCD----------GTCQ-NQC-GCCKPSLIRKLSEPNDYHIVIGDSV-TDVEAA 172 (214)
T ss_pred eEeeCCeeEEeCC------------CCCc----------cccc-cCC-CCCHHHHHHHHhhcCCcEEEEeCCH-HHHHHH
Confidence 222221 223 1100 0000 001 221 245555566788999999999 999988
Q ss_pred ccCCc
Q 014930 270 SKAGW 274 (415)
Q Consensus 270 k~~Gw 274 (415)
+.+|+
T Consensus 173 ~~Ad~ 177 (214)
T TIGR03333 173 KQSDL 177 (214)
T ss_pred HhCCe
Confidence 88887
No 86
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=97.96 E-value=2.7e-05 Score=72.11 Aligned_cols=99 Identities=23% Similarity=0.275 Sum_probs=65.3
Q ss_pred cccchhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCCceeeccCc
Q 014930 140 LVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDTEK 219 (415)
Q Consensus 140 i~k~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~~~FD~vi~~a~KP~FF~~~~~fr~vd~~~ 219 (415)
+...|++.++|+.|+++ .++.++||+...+++.++..+ ++..+|+..+.............+ .+
T Consensus 67 ~~~~pg~~e~L~~L~~~-~~~~IvS~~~~~~~~~~l~~~---------gl~~~f~~~~~~~~~~~i~~~~~~----~p-- 130 (205)
T PRK13582 67 LDPLPGAVEFLDWLRER-FQVVILSDTFYEFAGPLMRQL---------GWPTLFCHSLEVDEDGMITGYDLR----QP-- 130 (205)
T ss_pred CCCCCCHHHHHHHHHhc-CCEEEEeCCcHHHHHHHHHHc---------CCchhhcceEEECCCCeEECcccc----cc--
Confidence 44569999999999999 899999999999999999886 455666533222110000000000 00
Q ss_pred ccccccccccccCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCc
Q 014930 220 DTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGW 274 (415)
Q Consensus 220 ~~~~~~~~~~l~~g~vY~~G~~~~~~~~~g~~g~~vLYvGDhi~~Di~~~k~~Gw 274 (415)
.+ ...+++.++..+.+++||||.. +|+..++.+|.
T Consensus 131 ------------------~~-k~~~l~~~~~~~~~~v~iGDs~-~D~~~~~aa~~ 165 (205)
T PRK13582 131 ------------------DG-KRQAVKALKSLGYRVIAAGDSY-NDTTMLGEADA 165 (205)
T ss_pred ------------------ch-HHHHHHHHHHhCCeEEEEeCCH-HHHHHHHhCCC
Confidence 01 1244555566778999999998 99977766665
No 87
>PLN02645 phosphoglycolate phosphatase
Probab=97.94 E-value=2.5e-06 Score=85.37 Aligned_cols=43 Identities=14% Similarity=0.215 Sum_probs=38.6
Q ss_pred HHHHHHHhCCCCCcEEEEcccccccccccccCCceEEEEeccc
Q 014930 241 LKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIHEL 283 (415)
Q Consensus 241 ~~~~~~~~g~~g~~vLYvGDhi~~Di~~~k~~GwrT~lVvpEL 283 (415)
+..+++.+|.++++++||||++.+||..|+++||+|++|.+-.
T Consensus 236 ~~~a~~~~~~~~~~~~~VGD~~~~Di~~A~~aG~~~ilV~~G~ 278 (311)
T PLN02645 236 MDYLANKFGIEKSQICMVGDRLDTDILFGQNGGCKTLLVLSGV 278 (311)
T ss_pred HHHHHHHcCCCcccEEEEcCCcHHHHHHHHHcCCCEEEEcCCC
Confidence 4567888999999999999999999999999999999997643
No 88
>PF13242 Hydrolase_like: HAD-hyrolase-like; PDB: 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A 2HX1_D 2X4D_A 3HLT_C 3L1U_B ....
Probab=97.90 E-value=5.4e-06 Score=65.50 Aligned_cols=47 Identities=23% Similarity=0.327 Sum_probs=41.8
Q ss_pred CcHHHHHHHhCCCCCcEEEEcccccccccccccCCceEEEEeccchh
Q 014930 239 GCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIHELES 285 (415)
Q Consensus 239 G~~~~~~~~~g~~g~~vLYvGDhi~~Di~~~k~~GwrT~lVvpEL~~ 285 (415)
+.+..+++.+++.++++++|||++.+||..++++||+|++|..-...
T Consensus 8 ~~~~~a~~~~~~~~~~~~~VGD~~~~Di~~a~~~G~~~ilV~tG~~~ 54 (75)
T PF13242_consen 8 GMLEQALKRLGVDPSRCVMVGDSLETDIEAAKAAGIDTILVLTGVYS 54 (75)
T ss_dssp HHHHHHHHHHTSGGGGEEEEESSTTTHHHHHHHTTSEEEEESSSSSC
T ss_pred HHHHHHHHHcCCCHHHEEEEcCCcHhHHHHHHHcCCcEEEECCCCCC
Confidence 45678899999999999999999889999999999999999885543
No 89
>PRK10444 UMP phosphatase; Provisional
Probab=97.89 E-value=5.1e-05 Score=73.76 Aligned_cols=44 Identities=20% Similarity=0.344 Sum_probs=38.7
Q ss_pred HHHHHHHhCCCCCcEEEEcccccccccccccCCceEEEEeccch
Q 014930 241 LKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIHELE 284 (415)
Q Consensus 241 ~~~~~~~~g~~g~~vLYvGDhi~~Di~~~k~~GwrT~lVvpEL~ 284 (415)
+..+++.++.++++++||||++.+||..|+++|++|++|.+-..
T Consensus 180 ~~~~~~~~~~~~~~~v~IGD~~~tDi~~A~~~G~~~vlV~~G~~ 223 (248)
T PRK10444 180 IRAALNKMQAHSEETVIVGDNLRTDILAGFQAGLETILVLSGVS 223 (248)
T ss_pred HHHHHHHcCCCcccEEEECCCcHHHHHHHHHcCCCEEEECCCCC
Confidence 45677788999999999999999999999999999999976543
No 90
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=97.89 E-value=4.6e-05 Score=70.33 Aligned_cols=106 Identities=16% Similarity=0.227 Sum_probs=70.2
Q ss_pred chhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhhhccCCCCCCCccCCccE-EEEcCCCCCCCCCCCCceeeccCccc
Q 014930 143 NGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDV-VIAQANKPDFYTSDHPFRCYDTEKDT 221 (415)
Q Consensus 143 ~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~~~FD~-vi~~a~KP~FF~~~~~fr~vd~~~~~ 221 (415)
.|++.++|+.++++|.++.|+|||+..++..+++++ ++..+|.. ++++.. +.++ |.
T Consensus 89 ~~~~~~~l~~l~~~g~~v~ivS~s~~~~v~~~~~~l---------g~~~~~~~~l~~~~~--g~~~------------g~ 145 (202)
T TIGR01490 89 YPEARDLIRWHKAEGHTIVLVSASLTILVKPLARIL---------GIDNAIGTRLEESED--GIYT------------GN 145 (202)
T ss_pred cHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHc---------CCcceEecceEEcCC--CEEe------------CC
Confidence 579999999999999999999999999999999987 34455543 222110 0111 00
Q ss_pred ccccccccccCCeeeccC---cHHHHHHHhCCCCCcEEEEcccccccccccccCCceEEEEec
Q 014930 222 LAFTKVDAFIPNKIYYHG---CLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIH 281 (415)
Q Consensus 222 ~~~~~~~~l~~g~vY~~G---~~~~~~~~~g~~g~~vLYvGDhi~~Di~~~k~~GwrT~lVvp 281 (415)
.. +. ..+..+ .+.++++..+.+.++|+++||+. +|+-..+.+|.. ++|.|
T Consensus 146 ~~----~~----~~~g~~K~~~l~~~~~~~~~~~~~~~~~gDs~-~D~~~~~~a~~~-~~v~~ 198 (202)
T TIGR01490 146 ID----GN----NCKGEGKVHALAELLAEEQIDLKDSYAYGDSI-SDLPLLSLVGHP-YVVNP 198 (202)
T ss_pred cc----CC----CCCChHHHHHHHHHHHHcCCCHHHcEeeeCCc-ccHHHHHhCCCc-EEeCC
Confidence 00 00 000011 13456667788888999999999 999877777744 44555
No 91
>PRK08238 hypothetical protein; Validated
Probab=97.75 E-value=8.5e-05 Score=78.84 Aligned_cols=95 Identities=21% Similarity=0.243 Sum_probs=70.6
Q ss_pred chhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCCceeeccCcccc
Q 014930 143 NGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDTEKDTL 222 (415)
Q Consensus 143 ~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~~~FD~vi~~a~KP~FF~~~~~fr~vd~~~~~~ 222 (415)
.|++.++|++++++|.++.|+|||+..+++.+++++ ++ ||.|++..... +.. |
T Consensus 74 ~pga~e~L~~lk~~G~~v~LaTas~~~~a~~i~~~l---------Gl---Fd~Vigsd~~~------------~~k-g-- 126 (479)
T PRK08238 74 NEEVLDYLRAERAAGRKLVLATASDERLAQAVAAHL---------GL---FDGVFASDGTT------------NLK-G-- 126 (479)
T ss_pred ChhHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHc---------CC---CCEEEeCCCcc------------ccC-C--
Confidence 479999999999999999999999999999999987 33 89888775221 000 0
Q ss_pred cccccccccCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCceEEEEeccc
Q 014930 223 AFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIHEL 283 (415)
Q Consensus 223 ~~~~~~~l~~g~vY~~G~~~~~~~~~g~~g~~vLYvGDhi~~Di~~~k~~GwrT~lVvpEL 283 (415)
++-...+.+.++ ..++.|+||+. +|+-..+.+| +.++|-|.-
T Consensus 127 ---------------~~K~~~l~~~l~--~~~~~yvGDS~-~Dlp~~~~A~-~av~Vn~~~ 168 (479)
T PRK08238 127 ---------------AAKAAALVEAFG--ERGFDYAGNSA-ADLPVWAAAR-RAIVVGASP 168 (479)
T ss_pred ---------------chHHHHHHHHhC--ccCeeEecCCH-HHHHHHHhCC-CeEEECCCH
Confidence 111223444443 34589999999 9998888777 778888753
No 92
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=97.66 E-value=0.00012 Score=66.57 Aligned_cols=102 Identities=13% Similarity=0.100 Sum_probs=75.0
Q ss_pred CcccccccchhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCCcee
Q 014930 135 DPNRYLVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRC 214 (415)
Q Consensus 135 np~kYi~k~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~~~FD~vi~~a~KP~FF~~~~~fr~ 214 (415)
+..-|+.+-|++.++|+.|++. ..+.|.|++...|++.+++.+ + ..+.+|+.+++...-. +.
T Consensus 36 ~~~~~v~~RPgl~eFL~~l~~~-yei~I~Ts~~~~yA~~il~~l-------d-p~~~~f~~~l~r~~~~--~~------- 97 (162)
T TIGR02251 36 IIPVYVFKRPHVDEFLERVSKW-YELVIFTASLEEYADPVLDIL-------D-RGGKVISRRLYRESCV--FT------- 97 (162)
T ss_pred EEEEEEEECCCHHHHHHHHHhc-CEEEEEcCCcHHHHHHHHHHH-------C-cCCCEEeEEEEccccE--Ee-------
Confidence 4567888999999999999987 899999999999999999998 2 2445788777633110 00
Q ss_pred eccCcccccccccccccCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCceEEE
Q 014930 215 YDTEKDTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAA 278 (415)
Q Consensus 215 vd~~~~~~~~~~~~~l~~g~vY~~G~~~~~~~~~g~~g~~vLYvGDhi~~Di~~~k~~GwrT~l 278 (415)
.|...+.+..+|...++|++|||.. .|+..+...|..+..
T Consensus 98 -----------------------~~~~~K~L~~l~~~~~~vIiVDD~~-~~~~~~~~NgI~i~~ 137 (162)
T TIGR02251 98 -----------------------NGKYVKDLSLVGKDLSKVIIIDNSP-YSYSLQPDNAIPIKS 137 (162)
T ss_pred -----------------------CCCEEeEchhcCCChhhEEEEeCCh-hhhccCccCEeecCC
Confidence 0111133455778889999999999 788777667755443
No 93
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=97.64 E-value=2.8e-05 Score=75.34 Aligned_cols=43 Identities=19% Similarity=0.291 Sum_probs=39.0
Q ss_pred HHHHHHHhCCCCCcEEEEcccccccccccccCCceEEEEeccc
Q 014930 241 LKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIHEL 283 (415)
Q Consensus 241 ~~~~~~~~g~~g~~vLYvGDhi~~Di~~~k~~GwrT~lVvpEL 283 (415)
++.+++.+++++++++||||++.+||..|+++||+|++|.+-.
T Consensus 184 ~~~~~~~~~~~~~~~~~VGD~~~~Di~~a~~~G~~~v~v~~G~ 226 (249)
T TIGR01457 184 MEKAVEHLGTEREETLMVGDNYLTDIRAGIDAGIDTLLVHTGV 226 (249)
T ss_pred HHHHHHHcCCCcccEEEECCCchhhHHHHHHcCCcEEEEcCCC
Confidence 4578889999999999999999999999999999999997644
No 94
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=97.64 E-value=0.0001 Score=66.35 Aligned_cols=104 Identities=16% Similarity=0.189 Sum_probs=63.6
Q ss_pred cccchhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCCceeeccCc
Q 014930 140 LVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDTEK 219 (415)
Q Consensus 140 i~k~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~~~FD~vi~~a~KP~FF~~~~~fr~vd~~~ 219 (415)
+...|++.++|+.++++|.++.|+|++...++..++..+ | +..+|.-.+... .-+.++. .+-....+.
T Consensus 72 ~~~~~g~~~~l~~l~~~g~~~~ivS~~~~~~i~~~~~~~-------g--~~~~~~~~~~~~-~~g~~~g-~~~~~~~~~- 139 (177)
T TIGR01488 72 VALRPGARELISWLKERGIDTVIVSGGFDFFVEPVAEKL-------G--IDDVFANRLEFD-DNGLLTG-PIEGQVNPE- 139 (177)
T ss_pred CCcCcCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHc-------C--CchheeeeEEEC-CCCEEeC-ccCCcccCC-
Confidence 345689999999999999999999999999999999886 2 223333222211 0000000 000000000
Q ss_pred ccccccccccccCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccc
Q 014930 220 DTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPS 270 (415)
Q Consensus 220 ~~~~~~~~~~l~~g~vY~~G~~~~~~~~~g~~g~~vLYvGDhi~~Di~~~k 270 (415)
...| .-.+.++++..|..+++|+||||+. +|+..++
T Consensus 140 ---------~~~K-----~~~l~~~~~~~~~~~~~~~~iGDs~-~D~~~~~ 175 (177)
T TIGR01488 140 ---------GECK-----GKVLKELLEESKITLKKIIAVGDSV-NDLPMLK 175 (177)
T ss_pred ---------cchH-----HHHHHHHHHHhCCCHHHEEEEeCCH-HHHHHHh
Confidence 0000 1124456667788889999999999 9986543
No 95
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=97.59 E-value=0.00015 Score=67.44 Aligned_cols=101 Identities=21% Similarity=0.291 Sum_probs=75.2
Q ss_pred chhHHHHHHHHHHcCCeEEEEeCCC---------h---hhhHHHHHhhhccCCCCCCCccCCccEEE---------EcCC
Q 014930 143 NGQVLQFVKMLREKGKKLFLLTNSP---------Y---YFVDGGMRFMLEDSTGYTDSWRELFDVVI---------AQAN 201 (415)
Q Consensus 143 ~p~l~~~L~~Lr~~GkklfLlTNS~---------~---~yt~~vm~~l~~~~~~~g~~W~~~FD~vi---------~~a~ 201 (415)
.|++.+.|..|++.|.+++++||-. . .+++.++.-|-.. |. -||.|. |.+|
T Consensus 33 ~~g~i~al~~l~~~gy~lVvvTNQsGi~rgyf~~~~f~~~~~~m~~~l~~~----gv----~id~i~~Cph~p~~~c~cR 104 (181)
T COG0241 33 IPGVIPALLKLQRAGYKLVVVTNQSGIGRGYFTEADFDKLHNKMLKILASQ----GV----KIDGILYCPHHPEDNCDCR 104 (181)
T ss_pred CccHHHHHHHHHhCCCeEEEEECCCCccccCccHHHHHHHHHHHHHHHHHc----CC----ccceEEECCCCCCCCCccc
Confidence 4789999999999999999999932 2 2333355544321 22 244444 4445
Q ss_pred CCCCCCCCCCceeeccCcccccccccccccCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCceEEEEec
Q 014930 202 KPDFYTSDHPFRCYDTEKDTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIH 281 (415)
Q Consensus 202 KP~FF~~~~~fr~vd~~~~~~~~~~~~~l~~g~vY~~G~~~~~~~~~g~~g~~vLYvGDhi~~Di~~~k~~GwrT~lVvp 281 (415)
|| . .|.+..+++..+.+.++..||||.+ +||.+|.++|.+++++..
T Consensus 105 KP------------~---------------------~gm~~~~~~~~~iD~~~s~~VGD~~-~Dlq~a~n~gi~~~~~~~ 150 (181)
T COG0241 105 KP------------K---------------------PGMLLSALKEYNIDLSRSYVVGDRL-TDLQAAENAGIKGVLVLT 150 (181)
T ss_pred CC------------C---------------------hHHHHHHHHHhCCCccceEEecCcH-HHHHHHHHCCCCceEEEc
Confidence 55 1 4778899999999999999999999 999999999999888877
Q ss_pred cchh
Q 014930 282 ELES 285 (415)
Q Consensus 282 EL~~ 285 (415)
+.-.
T Consensus 151 ~~~~ 154 (181)
T COG0241 151 GIGV 154 (181)
T ss_pred Cccc
Confidence 6543
No 96
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=97.46 E-value=0.00017 Score=69.23 Aligned_cols=82 Identities=12% Similarity=0.187 Sum_probs=59.0
Q ss_pred cchhHHHHHHHHHHcCCeEEEEeCCChhhhH--HHHHhhhccCCCCCCCccC-CccEEEEcCCCCCCCCCCCCceeeccC
Q 014930 142 KNGQVLQFVKMLREKGKKLFLLTNSPYYFVD--GGMRFMLEDSTGYTDSWRE-LFDVVIAQANKPDFYTSDHPFRCYDTE 218 (415)
Q Consensus 142 k~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~--~vm~~l~~~~~~~g~~W~~-~FD~vi~~a~KP~FF~~~~~fr~vd~~ 218 (415)
.-|+..++|++|+++|++++++||++..... ..++.+ ++.. +||.|++.+.-.
T Consensus 25 ~~pga~e~L~~L~~~G~~~~ivTN~~~~~~~~~~~L~~~---------gl~~~~~~~Ii~s~~~~--------------- 80 (242)
T TIGR01459 25 TYPGAVQNLNKIIAQGKPVYFVSNSPRNIFSLHKTLKSL---------GINADLPEMIISSGEIA--------------- 80 (242)
T ss_pred cCccHHHHHHHHHHCCCEEEEEeCCCCChHHHHHHHHHC---------CCCccccceEEccHHHH---------------
Confidence 4589999999999999999999999987665 445544 3444 789888765211
Q ss_pred cccccccccccccCCeeeccCcHHHHHHHhCCCCCcEEEEccccccccc
Q 014930 219 KDTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLR 267 (415)
Q Consensus 219 ~~~~~~~~~~~l~~g~vY~~G~~~~~~~~~g~~g~~vLYvGDhi~~Di~ 267 (415)
...+..+++..|+.++++++|||.. .|+.
T Consensus 81 -------------------~~~l~~~~~~~~~~~~~~~~vGd~~-~d~~ 109 (242)
T TIGR01459 81 -------------------VQMILESKKRFDIRNGIIYLLGHLE-NDII 109 (242)
T ss_pred -------------------HHHHHhhhhhccCCCceEEEeCCcc-cchh
Confidence 0112344455677889999999976 4664
No 97
>KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only]
Probab=97.46 E-value=0.00073 Score=64.86 Aligned_cols=96 Identities=16% Similarity=0.150 Sum_probs=79.0
Q ss_pred hhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhhhccCCCCCCCccCCccEEEEcC------CCCCCCCCCCCceeecc
Q 014930 144 GQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQA------NKPDFYTSDHPFRCYDT 217 (415)
Q Consensus 144 p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~~~FD~vi~~a------~KP~FF~~~~~fr~vd~ 217 (415)
||+..++..|+..|.++.|+|||+......-.++. .++.+.|+.+|.++ .|| +|
T Consensus 95 PGa~kLv~~L~~~gip~alat~s~~~~~~~k~~~~--------~~~~~~f~~~v~~d~~~v~~gKP------------~P 154 (222)
T KOG2914|consen 95 PGAEKLVNHLKNNGIPVALATSSTSASFELKISRH--------EDIFKNFSHVVLGDDPEVKNGKP------------DP 154 (222)
T ss_pred CcHHHHHHHHHhCCCCeeEEecCCcccHHHHHHHh--------hHHHHhcCCCeecCCccccCCCC------------Cc
Confidence 59999999999999999999999988888777765 35888899888822 445 43
Q ss_pred CcccccccccccccCCeeeccCcHHHHHHHhCCCC-CcEEEEcccccccccccccCCceEEEEec
Q 014930 218 EKDTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNG-PEVIYFGDHLFSDLRGPSKAGWRTAAIIH 281 (415)
Q Consensus 218 ~~~~~~~~~~~~l~~g~vY~~G~~~~~~~~~g~~g-~~vLYvGDhi~~Di~~~k~~GwrT~lVvp 281 (415)
+ + +-.+.+++|..+ ++||.|.|.+ .=|.+++.+||..++|--
T Consensus 155 d--------------------i-~l~A~~~l~~~~~~k~lVfeds~-~Gv~aa~aagm~vi~v~~ 197 (222)
T KOG2914|consen 155 D--------------------I-YLKAAKRLGVPPPSKCLVFEDSP-VGVQAAKAAGMQVVGVAT 197 (222)
T ss_pred h--------------------H-HHHHHHhcCCCCccceEEECCCH-HHHHHHHhcCCeEEEecC
Confidence 1 1 336788999998 9999999999 778889999999998855
No 98
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=97.45 E-value=0.00012 Score=79.04 Aligned_cols=87 Identities=17% Similarity=0.194 Sum_probs=65.5
Q ss_pred chhHHHHHHHHHHcC-CeEEEEeCCChhhhHHHHHhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCCceeeccCccc
Q 014930 143 NGQVLQFVKMLREKG-KKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDTEKDT 221 (415)
Q Consensus 143 ~p~l~~~L~~Lr~~G-kklfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~~~FD~vi~~a~KP~FF~~~~~fr~vd~~~~~ 221 (415)
-|++.++|++|++.| +++.++||.+...+..+++.+ ++.++|+-+ .| .
T Consensus 386 ~~g~~e~l~~L~~~g~i~v~ivTgd~~~~a~~i~~~l---------gi~~~f~~~-----~p------------~----- 434 (556)
T TIGR01525 386 RPEAKEAIAALKRAGGIKLVMLTGDNRSAAEAVAAEL---------GIDEVHAEL-----LP------------E----- 434 (556)
T ss_pred hHhHHHHHHHHHHcCCCeEEEEeCCCHHHHHHHHHHh---------CCCeeeccC-----CH------------H-----
Confidence 479999999999999 999999999999999999988 333444321 12 0
Q ss_pred ccccccccccCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCceEEEEecc
Q 014930 222 LAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIHE 282 (415)
Q Consensus 222 ~~~~~~~~l~~g~vY~~G~~~~~~~~~g~~g~~vLYvGDhi~~Di~~~k~~GwrT~lVvpE 282 (415)
.- ..+++.++..+.+|+||||.+ +|+.+++++| +.|.+-
T Consensus 435 -----------------~K-~~~v~~l~~~~~~v~~vGDg~-nD~~al~~A~---vgia~g 473 (556)
T TIGR01525 435 -----------------DK-LAIVKELQEEGGVVAMVGDGI-NDAPALAAAD---VGIAMG 473 (556)
T ss_pred -----------------HH-HHHHHHHHHcCCEEEEEECCh-hHHHHHhhCC---EeEEeC
Confidence 00 134455555788999999999 9999988888 455543
No 99
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=97.44 E-value=0.00016 Score=73.00 Aligned_cols=108 Identities=20% Similarity=0.131 Sum_probs=70.4
Q ss_pred cccchhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCCceeecc-C
Q 014930 140 LVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDT-E 218 (415)
Q Consensus 140 i~k~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~~~FD~vi~~a~KP~FF~~~~~fr~vd~-~ 218 (415)
+...|++.++|+.|++.|.++.|+||+...+++.++..+ |.+ -+++. + |...+. -
T Consensus 180 l~l~pGa~elL~~Lk~~G~~~aIvSgg~~~~~~~l~~~L-------gld------~~~an--~---------lei~dg~l 235 (322)
T PRK11133 180 LPLMPGLTELVLKLQALGWKVAIASGGFTYFADYLRDKL-------RLD------AAVAN--E---------LEIMDGKL 235 (322)
T ss_pred CCCChhHHHHHHHHHHcCCEEEEEECCcchhHHHHHHHc-------CCC------eEEEe--E---------EEEECCEE
Confidence 556799999999999999999999999999999888765 221 11211 0 000000 0
Q ss_pred cccccccccccccCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCceEE
Q 014930 219 KDTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTA 277 (415)
Q Consensus 219 ~~~~~~~~~~~l~~g~vY~~G~~~~~~~~~g~~g~~vLYvGDhi~~Di~~~k~~GwrT~ 277 (415)
||......+.. ++ ..-.+.++++.+|+++++|++|||.. +|+..++.+|+-.+
T Consensus 236 tg~v~g~iv~~--k~---K~~~L~~la~~lgi~~~qtIaVGDg~-NDl~m~~~AGlgiA 288 (322)
T PRK11133 236 TGNVLGDIVDA--QY---KADTLTRLAQEYEIPLAQTVAIGDGA-NDLPMIKAAGLGIA 288 (322)
T ss_pred EeEecCccCCc--cc---HHHHHHHHHHHcCCChhhEEEEECCH-HHHHHHHHCCCeEE
Confidence 00000000000 00 01124578889999999999999999 99998888897554
No 100
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=97.28 E-value=0.00067 Score=64.00 Aligned_cols=109 Identities=20% Similarity=0.062 Sum_probs=69.9
Q ss_pred cccchhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhhhccCCCCCCCccCCcc--EEEEcCCCCCCCCCCCCceeecc
Q 014930 140 LVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFD--VVIAQANKPDFYTSDHPFRCYDT 217 (415)
Q Consensus 140 i~k~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~~~FD--~vi~~a~KP~FF~~~~~fr~vd~ 217 (415)
+...|++.++|+.||+.| +++|+||+...++..+++.+ |.+ .+|. +.+.+.. .++
T Consensus 67 i~l~pga~ell~~lk~~~-~~~IVS~~~~~~~~~il~~l-------gi~--~~~an~l~~~~~g---~~t---------- 123 (203)
T TIGR02137 67 LKPLEGAVEFVDWLRERF-QVVILSDTFYEFSQPLMRQL-------GFP--TLLCHKLEIDDSD---RVV---------- 123 (203)
T ss_pred CCCCccHHHHHHHHHhCC-eEEEEeCChHHHHHHHHHHc-------CCc--hhhceeeEEecCC---eeE----------
Confidence 345799999999999987 89999999999999999987 332 3444 2221101 111
Q ss_pred CcccccccccccccCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCceEEEEeccchhH
Q 014930 218 EKDTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIHELESE 286 (415)
Q Consensus 218 ~~~~~~~~~~~~l~~g~vY~~G~~~~~~~~~g~~g~~vLYvGDhi~~Di~~~k~~GwrT~lVvpEL~~E 286 (415)
|.. . .+..+-. ..++.+...+.++++|||+. +|+...+.+|...+..-.+...+
T Consensus 124 --G~~----~-------~~~~~K~-~~l~~l~~~~~~~v~vGDs~-nDl~ml~~Ag~~ia~~ak~~~~~ 177 (203)
T TIGR02137 124 --GYQ----L-------RQKDPKR-QSVIAFKSLYYRVIAAGDSY-NDTTMLSEAHAGILFHAPENVIR 177 (203)
T ss_pred --Cee----e-------cCcchHH-HHHHHHHhhCCCEEEEeCCH-HHHHHHHhCCCCEEecCCHHHHH
Confidence 000 0 0001111 22333333455899999999 99988888888877765555444
No 101
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=97.21 E-value=0.00013 Score=70.07 Aligned_cols=41 Identities=22% Similarity=0.417 Sum_probs=36.5
Q ss_pred HHHHHHHhCCCCCcE-EEEcccccccccccccCCceEEEEec
Q 014930 241 LKSFLQITKWNGPEV-IYFGDHLFSDLRGPSKAGWRTAAIIH 281 (415)
Q Consensus 241 ~~~~~~~~g~~g~~v-LYvGDhi~~Di~~~k~~GwrT~lVvp 281 (415)
++.+++.++.+++++ +||||.+.+||.+|+++||+|++|.+
T Consensus 194 ~~~~~~~~~~~~~~~~~~IGD~~~~Di~~A~~~G~~~i~v~~ 235 (236)
T TIGR01460 194 YRAALNLLQARPERRDVMVGDNLRTDILGAKNAGFDTLLVLT 235 (236)
T ss_pred HHHHHHHhCCCCccceEEECCCcHHHHHHHHHCCCcEEEEec
Confidence 457888889888887 99999999999999999999999854
No 102
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=97.20 E-value=0.00031 Score=75.46 Aligned_cols=81 Identities=16% Similarity=0.140 Sum_probs=63.4
Q ss_pred hhHHHHHHHHHHcCC-eEEEEeCCChhhhHHHHHhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCCceeeccCcccc
Q 014930 144 GQVLQFVKMLREKGK-KLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDTEKDTL 222 (415)
Q Consensus 144 p~l~~~L~~Lr~~Gk-klfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~~~FD~vi~~a~KP~FF~~~~~fr~vd~~~~~~ 222 (415)
|++.+.|++|++.|+ ++.++||++...+..+++.+ |. .++|..+ .| +.
T Consensus 365 ~~~~e~i~~L~~~Gi~~v~vvTgd~~~~a~~i~~~l-------gi--~~~f~~~-----~p------------~~----- 413 (536)
T TIGR01512 365 PDAAEAIAELKALGIEKVVMLTGDRRAVAERVAREL-------GI--DEVHAEL-----LP------------ED----- 413 (536)
T ss_pred HHHHHHHHHHHHcCCCcEEEEcCCCHHHHHHHHHHc-------CC--hhhhhcc-----Cc------------HH-----
Confidence 799999999999999 99999999999999999987 33 2333311 12 10
Q ss_pred cccccccccCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCc
Q 014930 223 AFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGW 274 (415)
Q Consensus 223 ~~~~~~~l~~g~vY~~G~~~~~~~~~g~~g~~vLYvGDhi~~Di~~~k~~Gw 274 (415)
- ..+++.++.++.+|+||||.+ +|+.+++++|.
T Consensus 414 -----------------K-~~~i~~l~~~~~~v~~vGDg~-nD~~al~~A~v 446 (536)
T TIGR01512 414 -----------------K-LEIVKELREKYGPVAMVGDGI-NDAPALAAADV 446 (536)
T ss_pred -----------------H-HHHHHHHHhcCCEEEEEeCCH-HHHHHHHhCCE
Confidence 0 245666667789999999999 99999888884
No 103
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=97.20 E-value=0.0023 Score=61.94 Aligned_cols=115 Identities=16% Similarity=0.277 Sum_probs=76.3
Q ss_pred cccchhHHHHHHHH--HHcCCeEEEEeCCChhhhHHHHHhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCCceeecc
Q 014930 140 LVKNGQVLQFVKML--REKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDT 217 (415)
Q Consensus 140 i~k~p~l~~~L~~L--r~~GkklfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~~~FD~vi~~a~KP~FF~~~~~fr~vd~ 217 (415)
|.-+|++.++++.+ ++.|..+.+||++..-|++.+++.- +.++.|+-|+++ |..|.++
T Consensus 70 ip~~pgm~~~l~~l~~~~~~~~~~IiSDaNs~fI~~iL~~~---------gl~~~f~~I~TN---pa~~~~~-------- 129 (234)
T PF06888_consen 70 IPIDPGMKELLRFLAKNQRGFDLIIISDANSFFIETILEHH---------GLRDCFSEIFTN---PACFDAD-------- 129 (234)
T ss_pred CCCCccHHHHHHHHHhcCCCceEEEEeCCcHhHHHHHHHhC---------CCccccceEEeC---CceecCC--------
Confidence 55678999999999 4579999999999999999999875 567899988887 4444321
Q ss_pred CcccccccccccccCCeeeccCc------HHHHHHH---hCCCCCcEEEEcccccccccccccCC-ceEEEE
Q 014930 218 EKDTLAFTKVDAFIPNKIYYHGC------LKSFLQI---TKWNGPEVIYFGDHLFSDLRGPSKAG-WRTAAI 279 (415)
Q Consensus 218 ~~~~~~~~~~~~l~~g~vY~~G~------~~~~~~~---~g~~g~~vLYvGDhi~~Di~~~k~~G-wrT~lV 279 (415)
|.+...+... ..+. -++.| ++.+++. -|..-++|+||||-- +|+-++.+.+ -+.++.
T Consensus 130 --G~l~v~pyh~-h~C~-~C~~NmCK~~il~~~~~~~~~~g~~~~rviYiGDG~-nD~Cp~~~L~~~D~v~~ 196 (234)
T PF06888_consen 130 --GRLRVRPYHS-HGCS-LCPPNMCKGKILERLLQEQAQRGVPYDRVIYIGDGR-NDFCPALRLRPRDVVFP 196 (234)
T ss_pred --ceEEEeCccC-CCCC-cCCCccchHHHHHHHHHHHhhcCCCcceEEEECCCC-CCcCcccccCCCCEEec
Confidence 2222211111 0011 11222 3444443 245668999999999 9999887643 444443
No 104
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=96.96 E-value=0.0045 Score=61.33 Aligned_cols=114 Identities=13% Similarity=0.095 Sum_probs=70.0
Q ss_pred cccchhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCCceeeccCc
Q 014930 140 LVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDTEK 219 (415)
Q Consensus 140 i~k~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~~~FD~vi~~a~KP~FF~~~~~fr~vd~~~ 219 (415)
+...|++.++|+.|+++|.+++|+|++.-.++..++..+ +|.+.|..|+++--+ ++. .
T Consensus 120 l~l~pG~~efl~~L~~~GIpv~IvS~G~~~~Ie~vL~~l---------gl~~~~~~IvSN~L~------------f~~-d 177 (277)
T TIGR01544 120 VMLKDGYENFFDKLQQHSIPVFIFSAGIGNVLEEVLRQA---------GVYHPNVKVVSNFMD------------FDE-D 177 (277)
T ss_pred CccCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHHc---------CCCCcCceEEeeeEE------------ECC-C
Confidence 556899999999999999999999999999999999876 354445444322100 010 0
Q ss_pred ccccccccccccCCeeeccCc----HHHHHHHhC--CCCCcEEEEcccccccccccccC-CceEEEEec
Q 014930 220 DTLAFTKVDAFIPNKIYYHGC----LKSFLQITK--WNGPEVIYFGDHLFSDLRGPSKA-GWRTAAIIH 281 (415)
Q Consensus 220 ~~~~~~~~~~l~~g~vY~~G~----~~~~~~~~g--~~g~~vLYvGDhi~~Di~~~k~~-GwrT~lVvp 281 (415)
|.+.. ..+++ |-+.+- +..+++.++ ..+++|++|||.. +|+..+.-. .-.|++=|=
T Consensus 178 GvltG-~~~P~----i~~~~K~~~v~~~~~~~~~~~~~~~~vI~vGDs~-~Dl~ma~g~~~~~~~l~ig 240 (277)
T TIGR01544 178 GVLKG-FKGPL----IHTFNKNHDVALRNTEYFNQLKDRSNIILLGDSQ-GDLRMADGVANVEHILKIG 240 (277)
T ss_pred CeEeC-CCCCc----ccccccHHHHHHHHHHHhCccCCcceEEEECcCh-hhhhHhcCCCcccceEEEE
Confidence 11100 00000 000111 112455666 6788999999999 999766532 444544433
No 105
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=96.89 E-value=0.0024 Score=63.68 Aligned_cols=64 Identities=16% Similarity=0.265 Sum_probs=53.5
Q ss_pred cchhhHHHHhcCccccc-ccchhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhhhccCCCCCCCccCCccEEEEcCC
Q 014930 124 RRGLVHRGILSDPNRYL-VKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQAN 201 (415)
Q Consensus 124 ~~G~lk~~v~~np~kYi-~k~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~~~FD~vi~~a~ 201 (415)
.+|+|-.. ++=| .++|++.++|++|+++|.++.|+||+..+.+..+|+.+ +...+||+|+++..
T Consensus 133 LDgTLi~~-----~~~v~irdPgV~EaL~~LkekGikLaIaTS~~Re~v~~~L~~l---------GLd~YFdvIIs~Gd 197 (301)
T TIGR01684 133 LDSTLITD-----EEPVRIRDPRIYDSLTELKKRGCILVLWSYGDRDHVVESMRKV---------KLDRYFDIIISGGH 197 (301)
T ss_pred cCCCCcCC-----CCccccCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHc---------CCCcccCEEEECCc
Confidence 46766433 4444 56899999999999999999999999999999999987 56789999999883
No 106
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=96.85 E-value=0.0019 Score=69.86 Aligned_cols=81 Identities=15% Similarity=0.195 Sum_probs=61.6
Q ss_pred chhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCCceeeccCcccc
Q 014930 143 NGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDTEKDTL 222 (415)
Q Consensus 143 ~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~~~FD~vi~~a~KP~FF~~~~~fr~vd~~~~~~ 222 (415)
.|+..++|++||+.|.++.++||.+...++.+++.+ |.+ +....+| ..
T Consensus 407 ~~~a~e~i~~Lk~~Gi~v~ilSgd~~~~a~~ia~~l-------gi~--------~~~~~~p------------~~----- 454 (562)
T TIGR01511 407 RPEAKEVIQALKRRGIEPVMLTGDNRKTAKAVAKEL-------GIN--------VRAEVLP------------DD----- 454 (562)
T ss_pred cHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHc-------CCc--------EEccCCh------------HH-----
Confidence 478999999999999999999999999999999987 442 1122233 10
Q ss_pred cccccccccCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCc
Q 014930 223 AFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGW 274 (415)
Q Consensus 223 ~~~~~~~l~~g~vY~~G~~~~~~~~~g~~g~~vLYvGDhi~~Di~~~k~~Gw 274 (415)
- .++++.+..++++|+||||.+ +|+.+.+++|.
T Consensus 455 -----------------K-~~~v~~l~~~~~~v~~VGDg~-nD~~al~~A~v 487 (562)
T TIGR01511 455 -----------------K-AALIKELQEKGRVVAMVGDGI-NDAPALAQADV 487 (562)
T ss_pred -----------------H-HHHHHHHHHcCCEEEEEeCCC-ccHHHHhhCCE
Confidence 0 134444445788999999999 99988887774
No 107
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=96.82 E-value=0.0046 Score=56.07 Aligned_cols=85 Identities=13% Similarity=0.136 Sum_probs=62.8
Q ss_pred CcccccccchhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhhhccCCCCCCCccCCc-cEEEEcCCCCCCCCCCCCce
Q 014930 135 DPNRYLVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELF-DVVIAQANKPDFYTSDHPFR 213 (415)
Q Consensus 135 np~kYi~k~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~~~F-D~vi~~a~KP~FF~~~~~fr 213 (415)
+...|+.+-|++.++|++|++. .++++.||++.+|++.+++.+ ++. +.+| +.|++...--
T Consensus 52 ~~~~~v~~rPgv~efL~~l~~~-yel~I~T~~~~~yA~~vl~~l-------dp~-~~~F~~ri~~rd~~~---------- 112 (156)
T TIGR02250 52 TMWYLTKLRPFLHEFLKEASKL-YEMHVYTMGTRAYAQAIAKLI-------DPD-GKYFGDRIISRDESG---------- 112 (156)
T ss_pred CeEEEEEECCCHHHHHHHHHhh-cEEEEEeCCcHHHHHHHHHHh-------CcC-CCeeccEEEEeccCC----------
Confidence 5677888899999999999855 999999999999999999998 332 2477 6565432100
Q ss_pred eeccCcccccccccccccCCeeeccCcHHHHHHHhCCCCCcEEEEcccc
Q 014930 214 CYDTEKDTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHL 262 (415)
Q Consensus 214 ~vd~~~~~~~~~~~~~l~~g~vY~~G~~~~~~~~~g~~g~~vLYvGDhi 262 (415)
++..+.+-.++|...+.|+.|.|+.
T Consensus 113 ------------------------~~~~KdL~~i~~~d~~~vvivDd~~ 137 (156)
T TIGR02250 113 ------------------------SPHTKSLLRLFPADESMVVIIDDRE 137 (156)
T ss_pred ------------------------CCccccHHHHcCCCcccEEEEeCCH
Confidence 1122344456677778899999987
No 108
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=96.76 E-value=0.0034 Score=59.52 Aligned_cols=137 Identities=25% Similarity=0.278 Sum_probs=83.1
Q ss_pred cchhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhhhc-----------------------cCCCC----CCCccCCcc
Q 014930 142 KNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLE-----------------------DSTGY----TDSWRELFD 194 (415)
Q Consensus 142 k~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l~~-----------------------~~~~~----g~~W~~~FD 194 (415)
.-|+-.+.|++||.++.|+=.+||-.-+--..+...|.. ..+-+ .++-+++||
T Consensus 24 avpga~eAl~rLr~~~~kVkFvTNttk~Sk~~l~~rL~rlgf~v~eeei~tsl~aa~~~~~~~~lrP~l~v~d~a~~dF~ 103 (262)
T KOG3040|consen 24 AVPGAVEALKRLRDQHVKVKFVTNTTKESKRNLHERLQRLGFDVSEEEIFTSLPAARQYLEENQLRPYLIVDDDALEDFD 103 (262)
T ss_pred cCCCHHHHHHHHHhcCceEEEEecCcchhHHHHHHHHHHhCCCccHHHhcCccHHHHHHHHhcCCCceEEEcccchhhCC
Confidence 458899999999999999999999776554444333321 11100 234445555
Q ss_pred E---------EEEcCCCCCCCCCC---CCceeeccCc-ccc-ccc------ccccc-------cCCeeeccC--------
Q 014930 195 V---------VIAQANKPDFYTSD---HPFRCYDTEK-DTL-AFT------KVDAF-------IPNKIYYHG-------- 239 (415)
Q Consensus 195 ~---------vi~~a~KP~FF~~~---~~fr~vd~~~-~~~-~~~------~~~~l-------~~g~vY~~G-------- 239 (415)
- ||..| |.-|+.+ +.||.+-... ..+ .+. ++..+ -++--|+-|
T Consensus 104 gidTs~pn~VVigla--pe~F~y~~ln~AFrvL~e~~k~~LIai~kgryykr~~Gl~lgpG~fv~aLeyatg~~a~vvGK 181 (262)
T KOG3040|consen 104 GIDTSDPNCVVIGLA--PEGFSYQRLNRAFRVLLEMKKPLLIAIGKGRYYKRVDGLCLGPGPFVAALEYATGCEATVVGK 181 (262)
T ss_pred CccCCCCCeEEEecC--cccccHHHHHHHHHHHHcCCCCeEEEecCceeeeeccccccCchHHHHHhhhccCceEEEecC
Confidence 3 33333 6666643 4676542210 100 000 11111 111122222
Q ss_pred -c---HHHHHHHhCCCCCcEEEEcccccccccccccCCceEEEEe
Q 014930 240 -C---LKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAII 280 (415)
Q Consensus 240 -~---~~~~~~~~g~~g~~vLYvGDhi~~Di~~~k~~GwrT~lVv 280 (415)
| .+.+++-+|+++.+++||||.+-+|+.+|.+.|+|.++|.
T Consensus 182 P~~~fFe~al~~~gv~p~~aVMIGDD~~dDvgGAq~~GMrgilVk 226 (262)
T KOG3040|consen 182 PSPFFFESALQALGVDPEEAVMIGDDLNDDVGGAQACGMRGILVK 226 (262)
T ss_pred CCHHHHHHHHHhcCCChHHheEEccccccchhhHhhhcceeEEee
Confidence 1 4567888999999999999999999999999999999984
No 109
>KOG2961 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=96.72 E-value=0.0065 Score=55.04 Aligned_cols=37 Identities=24% Similarity=0.334 Sum_probs=32.5
Q ss_pred CCCCcEEEEcccccccccccccCCceEEEEeccchhH
Q 014930 250 WNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIHELESE 286 (415)
Q Consensus 250 ~~g~~vLYvGDhi~~Di~~~k~~GwrT~lVvpEL~~E 286 (415)
..++|+++|||.+|+||.-|+..|--++.+-|-...|
T Consensus 137 ~~~se~~~vGDRlfTDI~~aN~mGs~gVw~~~gv~~~ 173 (190)
T KOG2961|consen 137 CTSSELIMVGDRLFTDIVYANRMGSLGVWTEPGVRAE 173 (190)
T ss_pred CChhHeEEEccchhhhHhhhhhccceeEEeccccccc
Confidence 4688999999999999999999999999888876555
No 110
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=96.67 E-value=0.0034 Score=62.67 Aligned_cols=65 Identities=17% Similarity=0.228 Sum_probs=53.2
Q ss_pred cchhhHHHHhcCccccc-ccchhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhhhccCCCCCCCccCCccEEEEcCCC
Q 014930 124 RRGLVHRGILSDPNRYL-VKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANK 202 (415)
Q Consensus 124 ~~G~lk~~v~~np~kYi-~k~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~~~FD~vi~~a~K 202 (415)
.+|+|-.. ++=| .++|++.++|++|+++|.++.|+||++.+.+..+++.+ ++.++||+|+++...
T Consensus 135 ~D~TL~~~-----~~~v~irdp~V~EtL~eLkekGikLaIvTNg~Re~v~~~Le~l---------gL~~yFDvII~~g~i 200 (303)
T PHA03398 135 LDSTLITD-----EEPVRIRDPFVYDSLDELKERGCVLVLWSYGNREHVVHSLKET---------KLEGYFDIIICGGRK 200 (303)
T ss_pred cCCCccCC-----CCccccCChhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHc---------CCCccccEEEECCCc
Confidence 36665433 4434 46899999999999999999999999999999999887 567999999988743
No 111
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=96.62 E-value=0.0014 Score=65.07 Aligned_cols=108 Identities=18% Similarity=0.183 Sum_probs=72.4
Q ss_pred hhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhhhccCCCCCCCccCCccE---E-EEcCCCCCCCCCCCCceeeccCc
Q 014930 144 GQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDV---V-IAQANKPDFYTSDHPFRCYDTEK 219 (415)
Q Consensus 144 p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~~~FD~---v-i~~a~KP~FF~~~~~fr~vd~~~ 219 (415)
++|...+.-|++-|. +||+||.+...- +. +|..|-.-..+ | .+..|+|.+++...++
T Consensus 168 ~KL~kA~~yLqnP~c-lflatn~D~~~p------~~-----~~~~ipG~G~~v~av~~~t~R~P~v~GKP~~~------- 228 (306)
T KOG2882|consen 168 PKLMKALNYLQNPGC-LFLATNRDATTP------PT-----PGVEIPGAGSFVAAVKFATGRQPIVLGKPSTF------- 228 (306)
T ss_pred HHHHHHHHHhCCCCc-EEEeccCccccC------CC-----CCeeccCCccHHHHHHHHhcCCCeecCCCCHH-------
Confidence 467778888887775 999999886433 01 12222221211 1 1122777666532221
Q ss_pred ccccccccccccCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCceEEEEeccchhHHHHh
Q 014930 220 DTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIHELESEIRIQ 290 (415)
Q Consensus 220 ~~~~~~~~~~l~~g~vY~~G~~~~~~~~~g~~g~~vLYvGDhi~~Di~~~k~~GwrT~lVvpEL~~Ei~~~ 290 (415)
..+-+.+..+..+++++||||.+=+||.-++..|+.|.+|.-=...|-++.
T Consensus 229 --------------------m~~~l~~~~~i~psRt~mvGDRL~TDIlFG~~~G~~TLLvltGv~~led~~ 279 (306)
T KOG2882|consen 229 --------------------MFEYLLEKFNIDPSRTCMVGDRLDTDILFGKNCGFKTLLVLSGVTTLEDIL 279 (306)
T ss_pred --------------------HHHHHHHHcCCCcceEEEEcccchhhhhHhhccCcceEEEecCcCcHHHHH
Confidence 134577889999999999999999999999999999999987655554443
No 112
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=96.26 E-value=0.0035 Score=63.07 Aligned_cols=31 Identities=23% Similarity=0.366 Sum_probs=28.4
Q ss_pred CCcEEEEcccccccccccccCCceEEEEecc
Q 014930 252 GPEVIYFGDHLFSDLRGPSKAGWRTAAIIHE 282 (415)
Q Consensus 252 g~~vLYvGDhi~~Di~~~k~~GwrT~lVvpE 282 (415)
.++++||||++.+||..|+++||.|++|..-
T Consensus 263 ~~~~~mIGD~~~tDI~ga~~~G~~silV~tG 293 (321)
T TIGR01456 263 FHALYMVGDNPASDIIGAQNYGWFSCLVKTG 293 (321)
T ss_pred hheEEEEcCChhhhhhhHHhCCceEEEeccc
Confidence 3699999999999999999999999999753
No 113
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=96.15 E-value=0.01 Score=53.81 Aligned_cols=35 Identities=14% Similarity=0.385 Sum_probs=32.7
Q ss_pred hhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhh
Q 014930 144 GQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFM 178 (415)
Q Consensus 144 p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l 178 (415)
|++.++|+.++++|.+++|+|.|+..++..+++.+
T Consensus 92 ~~~~e~i~~~~~~~~~v~IvS~~~~~~i~~~~~~~ 126 (192)
T PF12710_consen 92 PDAMELIRELKDNGIKVVIVSGSPDEIIEPIAERL 126 (192)
T ss_dssp TTHHHHHHHHHHTTSEEEEEEEEEHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHc
Confidence 67779999999999999999999999999999876
No 114
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=96.14 E-value=0.015 Score=57.26 Aligned_cols=37 Identities=19% Similarity=0.296 Sum_probs=30.0
Q ss_pred cchhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhh
Q 014930 142 KNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFM 178 (415)
Q Consensus 142 k~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l 178 (415)
.-|++.++|+.|++.|.+++++||.+....+..+..|
T Consensus 119 ~ipGA~e~L~~L~~~G~~v~iVTnR~~~~~~~T~~~L 155 (266)
T TIGR01533 119 PVAGALDFLNYANSKGVKIFYVSNRSEKEKAATLKNL 155 (266)
T ss_pred cCccHHHHHHHHHHCCCeEEEEeCCCcchHHHHHHHH
Confidence 4589999999999999999999999866555444443
No 115
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=96.13 E-value=0.011 Score=53.67 Aligned_cols=34 Identities=26% Similarity=0.403 Sum_probs=28.7
Q ss_pred hcCcccccccchhHHHHHHHHHHcCCeEEEEeCC
Q 014930 133 LSDPNRYLVKNGQVLQFVKMLREKGKKLFLLTNS 166 (415)
Q Consensus 133 ~~np~kYi~k~p~l~~~L~~Lr~~GkklfLlTNS 166 (415)
..+|+.+.--.|++++.|.+|.+.|.+++++||-
T Consensus 21 ~~~~~D~~~~~~~v~~~L~~l~~~Gy~IvIvTNQ 54 (159)
T PF08645_consen 21 PKDPDDWKFFPPGVPEALRELHKKGYKIVIVTNQ 54 (159)
T ss_dssp -SSTCGGEEC-TTHHHHHHHHHHTTEEEEEEEE-
T ss_pred cCCHHHhhhcchhHHHHHHHHHhcCCeEEEEeCc
Confidence 3468888888889999999999999999999996
No 116
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=95.95 E-value=0.017 Score=55.04 Aligned_cols=97 Identities=14% Similarity=0.151 Sum_probs=65.8
Q ss_pred ccccchhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCCceeeccC
Q 014930 139 YLVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDTE 218 (415)
Q Consensus 139 Yi~k~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~~~FD~vi~~a~KP~FF~~~~~fr~vd~~ 218 (415)
++.-.|+..+++..+|++|.+++|||.|+..+++.++..+ | +...+--+..... ++++..
T Consensus 75 ~~~l~~ga~elv~~lk~~G~~v~iiSgg~~~lv~~ia~~l-------g--~d~~~an~l~~~d--G~ltG~--------- 134 (212)
T COG0560 75 FLRLTPGAEELVAALKAAGAKVVIISGGFTFLVEPIAERL-------G--IDYVVANELEIDD--GKLTGR--------- 134 (212)
T ss_pred cCcCCccHHHHHHHHHHCCCEEEEEcCChHHHHHHHHHHh-------C--CchheeeEEEEeC--CEEece---------
Confidence 3555789999999999999999999999999999999998 3 2222222222111 122211
Q ss_pred cccccccccccccCCeeeccC---cHHHHHHHhCCCCCcEEEEccccccccc
Q 014930 219 KDTLAFTKVDAFIPNKIYYHG---CLKSFLQITKWNGPEVIYFGDHLFSDLR 267 (415)
Q Consensus 219 ~~~~~~~~~~~l~~g~vY~~G---~~~~~~~~~g~~g~~vLYvGDhi~~Di~ 267 (415)
.... .++.++ .+.++++..|.+.+++..+||+. +|+-
T Consensus 135 ---v~g~--------~~~~~~K~~~l~~~~~~~g~~~~~~~a~gDs~-nDlp 174 (212)
T COG0560 135 ---VVGP--------ICDGEGKAKALRELAAELGIPLEETVAYGDSA-NDLP 174 (212)
T ss_pred ---eeee--------ecCcchHHHHHHHHHHHcCCCHHHeEEEcCch-hhHH
Confidence 0000 011112 24567888899999999999999 9983
No 117
>PRK11590 hypothetical protein; Provisional
Probab=95.81 E-value=0.027 Score=52.97 Aligned_cols=94 Identities=14% Similarity=0.015 Sum_probs=59.6
Q ss_pred ccchhHHHHH-HHHHHcCCeEEEEeCCChhhhHHHHHhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCCceeeccCc
Q 014930 141 VKNGQVLQFV-KMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDTEK 219 (415)
Q Consensus 141 ~k~p~l~~~L-~~Lr~~GkklfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~~~FD~vi~~a~KP~FF~~~~~fr~vd~~~ 219 (415)
..-|++.+.| +.|++.|.+++|+|||+..++..++.++ +|.. .|-+|+.- ..+ .-|
T Consensus 95 ~~~pga~e~L~~~l~~~G~~l~IvSas~~~~~~~il~~l---------~~~~-~~~~i~t~--l~~-----------~~t 151 (211)
T PRK11590 95 TAFPVVQERLTTYLLSSDADVWLITGSPQPLVEQVYFDT---------PWLP-RVNLIASQ--MQR-----------RYG 151 (211)
T ss_pred cCCccHHHHHHHHHHhCCCEEEEEeCCcHHHHHHHHHHc---------cccc-cCceEEEE--EEE-----------EEc
Confidence 4468999999 5789999999999999999999999987 4433 23344322 100 011
Q ss_pred ccccccccccccCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccc
Q 014930 220 DTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDL 266 (415)
Q Consensus 220 ~~~~~~~~~~l~~g~vY~~G~~~~~~~~~g~~g~~vLYvGDhi~~Di 266 (415)
|.. .....|..|=...+.+.+|.+...+-.-|||+ +|+
T Consensus 152 g~~--------~g~~c~g~~K~~~l~~~~~~~~~~~~aY~Ds~-~D~ 189 (211)
T PRK11590 152 GWV--------LTLRCLGHEKVAQLERKIGTPLRLYSGYSDSK-QDN 189 (211)
T ss_pred cEE--------CCccCCChHHHHHHHHHhCCCcceEEEecCCc-ccH
Confidence 211 11112223334344445565666777889999 998
No 118
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=95.68 E-value=0.088 Score=49.28 Aligned_cols=86 Identities=12% Similarity=0.115 Sum_probs=62.7
Q ss_pred cccccccchHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHH----HHhhcchhhHHHHhcCcccccccchhHHHHHHHHH
Q 014930 79 GLMDFFCFTEACLIADIVQYFVDAKLEFDASYIYEDVNRAI----QHVHRRGLVHRGILSDPNRYLVKNGQVLQFVKMLR 154 (415)
Q Consensus 79 ~l~dlF~lpe~~L~a~lvd~~~~~~~~~~~~~l~~DV~~av----~~~h~~G~lk~~v~~np~kYi~k~p~l~~~L~~Lr 154 (415)
.++|-|-.+|.- .+-+--.++.+. .++++ +++|.+ + +++.+...+=|.=||+.+++.+..+
T Consensus 22 ~itdtf~~~e~k---~l~~~vls~tiS---------~rd~~g~mf~~i~~s--~-~Eile~llk~i~Idp~fKef~e~ik 86 (220)
T COG4359 22 YITDTFGPGEWK---ALKDGVLSKTIS---------FRDGFGRMFGSIHSS--L-EEILEFLLKDIKIDPGFKEFVEWIK 86 (220)
T ss_pred HHHhccCchHHH---HHHHHHhhCcee---------HHHHHHHHHHhcCCC--H-HHHHHHHHhhcccCccHHHHHHHHH
Confidence 366777777764 222212233333 23344 445543 4 8888888888888999999999999
Q ss_pred HcCCeEEEEeCCChhhhHHHHHhhh
Q 014930 155 EKGKKLFLLTNSPYYFVDGGMRFML 179 (415)
Q Consensus 155 ~~GkklfLlTNS~~~yt~~vm~~l~ 179 (415)
+++..+.++|...-.|+.++.+-+.
T Consensus 87 e~di~fiVvSsGm~~fI~~lfe~iv 111 (220)
T COG4359 87 EHDIPFIVVSSGMDPFIYPLFEGIV 111 (220)
T ss_pred HcCCCEEEEeCCCchHHHHHHHhhc
Confidence 9999999999999999999888775
No 119
>PRK10671 copA copper exporting ATPase; Provisional
Probab=95.44 E-value=0.034 Score=62.99 Aligned_cols=81 Identities=21% Similarity=0.234 Sum_probs=62.3
Q ss_pred hhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCCceeeccCccccc
Q 014930 144 GQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDTEKDTLA 223 (415)
Q Consensus 144 p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~~~FD~vi~~a~KP~FF~~~~~fr~vd~~~~~~~ 223 (415)
|+..+.|++|++.|.++.++|+.+...+..+.+.+ |.+ + ++. .-.|
T Consensus 653 ~~a~~~i~~L~~~gi~v~~~Tgd~~~~a~~ia~~l-------gi~--~----~~~-~~~p-------------------- 698 (834)
T PRK10671 653 SDSVAALQRLHKAGYRLVMLTGDNPTTANAIAKEA-------GID--E----VIA-GVLP-------------------- 698 (834)
T ss_pred hhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHc-------CCC--E----EEe-CCCH--------------------
Confidence 68899999999999999999999999999999987 332 2 221 1123
Q ss_pred ccccccccCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCc
Q 014930 224 FTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGW 274 (415)
Q Consensus 224 ~~~~~~l~~g~vY~~G~~~~~~~~~g~~g~~vLYvGDhi~~Di~~~k~~Gw 274 (415)
++- .++++.++.++.+|+||||.+ +|+...+.+|.
T Consensus 699 --------------~~K-~~~i~~l~~~~~~v~~vGDg~-nD~~al~~Agv 733 (834)
T PRK10671 699 --------------DGK-AEAIKRLQSQGRQVAMVGDGI-NDAPALAQADV 733 (834)
T ss_pred --------------HHH-HHHHHHHhhcCCEEEEEeCCH-HHHHHHHhCCe
Confidence 111 145666677788999999999 99988888877
No 120
>COG4229 Predicted enolase-phosphatase [Energy production and conversion]
Probab=95.42 E-value=0.03 Score=52.23 Aligned_cols=112 Identities=12% Similarity=0.191 Sum_probs=79.3
Q ss_pred cchhhHHHHhcCcccccccchhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhhhccCCCCCCCccCCccEEEEcCCCC
Q 014930 124 RRGLVHRGILSDPNRYLVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKP 203 (415)
Q Consensus 124 ~~G~lk~~v~~np~kYi~k~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~~~FD~vi~~a~KP 203 (415)
.+|.+|.-+ -|+..+.|++-++.|..+++-+.-...-.+.+-.|- . .-+..+||+
T Consensus 96 ~sgelkahl----------ypDav~~ik~wk~~g~~vyiYSSGSV~AQkL~Fghs----~--agdL~~lfs--------- 150 (229)
T COG4229 96 ESGELKAHL----------YPDAVQAIKRWKALGMRVYIYSSGSVKAQKLFFGHS----D--AGDLNSLFS--------- 150 (229)
T ss_pred ccCcccccc----------CHhHHHHHHHHHHcCCcEEEEcCCCchhHHHhhccc----c--cccHHhhhc---------
Confidence 567766544 357888888999999999999888777666533332 1 224555554
Q ss_pred CCCCCCCCceeeccCcccccccccccccCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCceEEEEeccc
Q 014930 204 DFYTSDHPFRCYDTEKDTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIHEL 283 (415)
Q Consensus 204 ~FF~~~~~fr~vd~~~~~~~~~~~~~l~~g~vY~~G~~~~~~~~~g~~g~~vLYvGDhi~~Di~~~k~~GwrT~lVvpEL 283 (415)
++| |++.|.-+ -.++...+.+..|+.+.+||++-|++ ..+-+|+..|++|++++.|=
T Consensus 151 Gyf---------DttiG~Kr-------------E~~SY~kIa~~iGl~p~eilFLSDn~-~EL~AA~~vGl~t~l~~R~g 207 (229)
T COG4229 151 GYF---------DTTIGKKR-------------ESQSYAKIAGDIGLPPAEILFLSDNP-EELKAAAGVGLATGLAVRPG 207 (229)
T ss_pred cee---------eccccccc-------------cchhHHHHHHhcCCCchheEEecCCH-HHHHHHHhcchheeeeecCC
Confidence 233 33222110 03567788889999999999999999 88888899999999998874
No 121
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=95.37 E-value=0.016 Score=55.83 Aligned_cols=33 Identities=27% Similarity=0.583 Sum_probs=29.5
Q ss_pred HHHHHHHhCCCCCcEEEEcccccccccccccCCc
Q 014930 241 LKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGW 274 (415)
Q Consensus 241 ~~~~~~~~g~~g~~vLYvGDhi~~Di~~~k~~Gw 274 (415)
+..+++.+|++.++|++|||+. +|+--.+.+|+
T Consensus 204 l~~l~~~~gi~~~e~i~~GD~~-NDi~m~~~ag~ 236 (272)
T PRK10530 204 LTQWVEAQGWSMKNVVAFGDNF-NDISMLEAAGL 236 (272)
T ss_pred HHHHHHHcCCCHHHeEEeCCCh-hhHHHHHhcCc
Confidence 5678999999999999999999 99988877886
No 122
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=95.32 E-value=0.061 Score=50.92 Aligned_cols=37 Identities=19% Similarity=0.185 Sum_probs=33.4
Q ss_pred cchhHHHHHH-HHHHcCCeEEEEeCCChhhhHHHHHhh
Q 014930 142 KNGQVLQFVK-MLREKGKKLFLLTNSPYYFVDGGMRFM 178 (415)
Q Consensus 142 k~p~l~~~L~-~Lr~~GkklfLlTNS~~~yt~~vm~~l 178 (415)
.-|++.+.|+ .+++.|.+++|+|||+..+++.++...
T Consensus 95 l~pga~e~L~~~l~~~G~~v~IvSas~~~~~~~ia~~~ 132 (210)
T TIGR01545 95 AFPLVAERLRQYLESSDADIWLITGSPQPLVEAVYFDS 132 (210)
T ss_pred CCccHHHHHHHHHHhCCCEEEEEcCCcHHHHHHHHHhc
Confidence 4689999995 788899999999999999999999775
No 123
>PLN02645 phosphoglycolate phosphatase
Probab=94.77 E-value=0.05 Score=54.46 Aligned_cols=36 Identities=28% Similarity=0.205 Sum_probs=30.0
Q ss_pred chhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhh
Q 014930 143 NGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFM 178 (415)
Q Consensus 143 ~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l 178 (415)
-|+..++|++||++|++++++||++..-...+++.|
T Consensus 46 ~~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~~l 81 (311)
T PLN02645 46 IEGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGKKF 81 (311)
T ss_pred CcCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHH
Confidence 378899999999999999999999866666655544
No 124
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=94.59 E-value=0.034 Score=62.32 Aligned_cols=35 Identities=17% Similarity=0.040 Sum_probs=34.0
Q ss_pred hhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhh
Q 014930 144 GQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFM 178 (415)
Q Consensus 144 p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l 178 (415)
|+..+.+++||+.|+++.++|+.+...+..+++.+
T Consensus 571 ~~a~~~i~~L~~~gi~~~llTGd~~~~a~~ia~~l 605 (741)
T PRK11033 571 ADARQAISELKALGIKGVMLTGDNPRAAAAIAGEL 605 (741)
T ss_pred hhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHc
Confidence 79999999999999999999999999999999998
No 125
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=94.06 E-value=0.13 Score=47.37 Aligned_cols=104 Identities=20% Similarity=0.269 Sum_probs=58.8
Q ss_pred chhHHHHHHHHHHcCCeEEEEe-CCChhhhHHHHHhhh-ccCCCCCCCccCCccEEEEcCCCCCCCCCCCCceeeccCcc
Q 014930 143 NGQVLQFVKMLREKGKKLFLLT-NSPYYFVDGGMRFML-EDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDTEKD 220 (415)
Q Consensus 143 ~p~l~~~L~~Lr~~GkklfLlT-NS~~~yt~~vm~~l~-~~~~~~g~~W~~~FD~vi~~a~KP~FF~~~~~fr~vd~~~~ 220 (415)
-|+++..|+.|+++|.++.++| ++..+.+..+|+-+- ...-..+..+.++||.
T Consensus 47 ypdv~~iL~~L~~~gv~lavASRt~~P~~A~~~L~~l~i~~~~~~~~~~~~~F~~------------------------- 101 (169)
T PF12689_consen 47 YPDVPEILQELKERGVKLAVASRTDEPDWARELLKLLEIDDADGDGVPLIEYFDY------------------------- 101 (169)
T ss_dssp -TTHHHHHHHHHHCT--EEEEE--S-HHHHHHHHHHTT-C----------CCECE-------------------------
T ss_pred CcCHHHHHHHHHHCCCEEEEEECCCChHHHHHHHHhcCCCccccccccchhhcch-------------------------
Confidence 5889999999999999999999 666789999988761 0000112233344432
Q ss_pred cccccccccccCCeeeccC---cHHHHHHHhCCCCCcEEEEcccccccccccccCCceEEEEeccch
Q 014930 221 TLAFTKVDAFIPNKIYYHG---CLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIHELE 284 (415)
Q Consensus 221 ~~~~~~~~~l~~g~vY~~G---~~~~~~~~~g~~g~~vLYvGDhi~~Di~~~k~~GwrT~lVvpEL~ 284 (415)
-.||.+. .++.+.+.+|++-+++|+|=|.- .-+...++.|..+++|-.=+.
T Consensus 102 ------------~eI~~gsK~~Hf~~i~~~tgI~y~eMlFFDDe~-~N~~~v~~lGV~~v~v~~Glt 155 (169)
T PF12689_consen 102 ------------LEIYPGSKTTHFRRIHRKTGIPYEEMLFFDDES-RNIEVVSKLGVTCVLVPDGLT 155 (169)
T ss_dssp ------------EEESSS-HHHHHHHHHHHH---GGGEEEEES-H-HHHHHHHTTT-EEEE-SSS--
T ss_pred ------------hheecCchHHHHHHHHHhcCCChhHEEEecCch-hcceeeEecCcEEEEeCCCCC
Confidence 1233332 24567789999999999999988 445445559999998765343
No 126
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=94.02 E-value=0.099 Score=59.74 Aligned_cols=103 Identities=13% Similarity=0.102 Sum_probs=71.2
Q ss_pred hhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCCceeeccCccccc
Q 014930 144 GQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDTEKDTLA 223 (415)
Q Consensus 144 p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~~~FD~vi~~a~KP~FF~~~~~fr~vd~~~~~~~ 223 (415)
|++++.+++||++|+++.++|+.+..-+..+.+.+ |.. ..++.++++..-. ..+.
T Consensus 531 ~~~~~~i~~l~~~Gi~v~miTGD~~~tA~~ia~~~-------Gi~--~~~~~~v~g~~l~----------~~~~------ 585 (884)
T TIGR01522 531 PGVKEAVTTLITGGVRIIMITGDSQETAVSIARRL-------GMP--SKTSQSVSGEKLD----------AMDD------ 585 (884)
T ss_pred hHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHc-------CCC--CCCCceeEhHHhH----------hCCH------
Confidence 69999999999999999999999999999999887 432 3344455443111 1110
Q ss_pred ccccc-cccCCeeeccCcHH---HHHHHhCCCCCcEEEEcccccccccccccCC
Q 014930 224 FTKVD-AFIPNKIYYHGCLK---SFLQITKWNGPEVIYFGDHLFSDLRGPSKAG 273 (415)
Q Consensus 224 ~~~~~-~l~~g~vY~~G~~~---~~~~~~g~~g~~vLYvGDhi~~Di~~~k~~G 273 (415)
.... -+.+..||+.-+-+ .+.+.+...|..|+|+||-+ +|+-+.++++
T Consensus 586 -~~l~~~~~~~~Vfar~~P~~K~~iv~~lq~~g~~v~mvGDGv-ND~pAl~~Ad 637 (884)
T TIGR01522 586 -QQLSQIVPKVAVFARASPEHKMKIVKALQKRGDVVAMTGDGV-NDAPALKLAD 637 (884)
T ss_pred -HHHHHHhhcCeEEEECCHHHHHHHHHHHHHCCCEEEEECCCc-ccHHHHHhCC
Confidence 0011 13345677665533 35556666789999999999 9998777765
No 127
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=93.03 E-value=0.15 Score=42.73 Aligned_cols=37 Identities=22% Similarity=0.249 Sum_probs=28.3
Q ss_pred cchhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhh
Q 014930 142 KNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFM 178 (415)
Q Consensus 142 k~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l 178 (415)
.-|+..++|++|+++|++++++||++..-...+++.|
T Consensus 15 ~ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L 51 (101)
T PF13344_consen 15 PIPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKL 51 (101)
T ss_dssp E-TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHH
T ss_pred cCcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHH
Confidence 3589999999999999999999999965555555555
No 128
>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=92.35 E-value=0.9 Score=43.84 Aligned_cols=116 Identities=14% Similarity=0.250 Sum_probs=73.1
Q ss_pred cccchhHHHHHHHHHHcCC-eEEEEeCCChhhhHHHHHhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCCceeeccC
Q 014930 140 LVKNGQVLQFVKMLREKGK-KLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDTE 218 (415)
Q Consensus 140 i~k~p~l~~~L~~Lr~~Gk-klfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~~~FD~vi~~a~KP~FF~~~~~fr~vd~~ 218 (415)
|--.|++.++++.+++.|. .+.|||.++.-|++.+++.+ +.-++|+-|.++ |+-|..
T Consensus 83 iP~~Pgmv~lik~~ak~g~~eliIVSDaNsfFIe~~Lea~---------~~~d~F~~IfTN---Pa~~da---------- 140 (256)
T KOG3120|consen 83 IPIVPGMVRLIKSAAKLGCFELIIVSDANSFFIEEILEAA---------GIHDLFSEIFTN---PACVDA---------- 140 (256)
T ss_pred CCCCccHHHHHHHHHhCCCceEEEEecCchhHHHHHHHHc---------cHHHHHHHHhcC---CcccCC----------
Confidence 3346999999999999996 89999999999999999987 566888877766 433322
Q ss_pred ccccccccccc-----ccCCeeeccCcHHHHHH---HhCCCCCcEEEEccccccccccccc-CCceEEE
Q 014930 219 KDTLAFTKVDA-----FIPNKIYYHGCLKSFLQ---ITKWNGPEVIYFGDHLFSDLRGPSK-AGWRTAA 278 (415)
Q Consensus 219 ~~~~~~~~~~~-----l~~g~vY~~G~~~~~~~---~~g~~g~~vLYvGDhi~~Di~~~k~-~GwrT~l 278 (415)
.|.+...+... +-|...=.|--++++.. .-|++-.++.||||.- +|+-+..+ .+.+-+.
T Consensus 141 ~G~L~v~pyH~~hsC~~CPsNmCKg~Vl~~~~~s~~~~gv~yer~iYvGDG~-nD~CP~l~Lr~~D~am 208 (256)
T KOG3120|consen 141 SGRLLVRPYHTQHSCNLCPSNMCKGLVLDELVASQLKDGVRYERLIYVGDGA-NDFCPVLRLRACDVAM 208 (256)
T ss_pred CCcEEeecCCCCCccCcCchhhhhhHHHHHHHHHHhhcCCceeeEEEEcCCC-CCcCcchhcccCceec
Confidence 23333322211 00000000111233322 2345556899999999 99977643 3444443
No 129
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=90.92 E-value=1.7 Score=42.07 Aligned_cols=37 Identities=19% Similarity=0.232 Sum_probs=31.1
Q ss_pred chhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhhh
Q 014930 143 NGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFML 179 (415)
Q Consensus 143 ~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l~ 179 (415)
-|+...+++.|++.|.++|++||-+...-+..+..|.
T Consensus 122 ip~al~l~~~l~~~G~~Vf~lTGR~e~~r~~T~~nL~ 158 (229)
T TIGR01675 122 LPEGLKLYQKIIELGIKIFLLSGRWEELRNATLDNLI 158 (229)
T ss_pred CHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHH
Confidence 4688889999999999999999999888666666664
No 130
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=90.75 E-value=0.59 Score=46.54 Aligned_cols=65 Identities=22% Similarity=0.363 Sum_probs=54.1
Q ss_pred hcCcccccccchhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhhhccCCCCCCCccCCccEEEEcCCCCCCC
Q 014930 133 LSDPNRYLVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFY 206 (415)
Q Consensus 133 ~~np~kYi~k~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~~~FD~vi~~a~KP~FF 206 (415)
..+-+.=-.++|.+..-|.+||+.|.-+.|=|-...+++...|+-+ ...++||+||+++.+-+-.
T Consensus 134 Itd~~~v~Ir~~~v~~sL~~Lk~~g~vLvLWSyG~~eHV~~sl~~~---------~L~~~Fd~ii~~G~~~~~~ 198 (297)
T PF05152_consen 134 ITDEGDVRIRDPAVYDSLRELKEQGCVLVLWSYGNREHVRHSLKEL---------KLEGYFDIIICGGNKAGEY 198 (297)
T ss_pred cccCCccccCChHHHHHHHHHHHcCCEEEEecCCCHHHHHHHHHHh---------CCccccEEEEeCCccCCcC
Confidence 3333443468899999999999999999999999999999999987 4558999999999776443
No 131
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=90.01 E-value=1.6 Score=42.63 Aligned_cols=126 Identities=17% Similarity=0.260 Sum_probs=78.7
Q ss_pred cccccccchhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCCceee
Q 014930 136 PNRYLVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCY 215 (415)
Q Consensus 136 p~kYi~k~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~~~FD~vi~~a~KP~FF~~~~~fr~v 215 (415)
..++..-++.++.+++.|++.|++++-+|.-+..+...-+++|-.. |-+..+- .-++..++. +...
T Consensus 76 ~~~~~lie~~~~~~i~~lq~~~~~v~alT~~~~~~~~~t~~~Lk~~----gi~fs~~------~~~~~~~~~----~~~~ 141 (252)
T PF11019_consen 76 LRKMELIESDVPNIINSLQNKGIPVIALTARGPNMEDWTLRELKSL----GIDFSSS------SFPEDGIIS----FPVF 141 (252)
T ss_pred hcceEEcchhHHHHHHHHHHCCCcEEEEcCCChhhHHHHHHHHHHC----CCCcccc------ccccCccee----cccc
Confidence 3444455789999999999999999999999999999999998421 3232111 001111110 0000
Q ss_pred ccCcccccccccccccCCeeeccCc-----HHHHHHHhCCCCCcEEEEcccccccccc---c-ccCCceEEEEec
Q 014930 216 DTEKDTLAFTKVDAFIPNKIYYHGC-----LKSFLQITKWNGPEVIYFGDHLFSDLRG---P-SKAGWRTAAIIH 281 (415)
Q Consensus 216 d~~~~~~~~~~~~~l~~g~vY~~G~-----~~~~~~~~g~~g~~vLYvGDhi~~Di~~---~-k~~GwrT~lVvp 281 (415)
+. .....-.+..|-+|++|. +..+++.+|+.++.|+||-|.. ..|.+ + +..|..-..+..
T Consensus 142 ~~-----~~~~~~~~~~GIlft~~~~KG~~L~~fL~~~~~~pk~IIfIDD~~-~nl~sv~~a~k~~~I~f~G~~Y 210 (252)
T PF11019_consen 142 DS-----ALSRAPSFYDGILFTGGQDKGEVLKYFLDKINQSPKKIIFIDDNK-ENLKSVEKACKKSGIDFIGFHY 210 (252)
T ss_pred cC-----CCCCCceeecCeEEeCCCccHHHHHHHHHHcCCCCCeEEEEeCCH-HHHHHHHHHHhhCCCcEEEEEE
Confidence 00 001112245566666664 6678999999999999999987 55532 2 345666555554
No 132
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=90.00 E-value=1.1 Score=42.59 Aligned_cols=94 Identities=17% Similarity=0.234 Sum_probs=62.1
Q ss_pred cchhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCC--CceeeccCc
Q 014930 142 KNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDH--PFRCYDTEK 219 (415)
Q Consensus 142 k~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~~~FD~vi~~a~KP~FF~~~~--~fr~vd~~~ 219 (415)
-.|+++++.++|++.|++++|+|.-=...+..|.+.| |.+..+ +.|.+=.|-.++. .| |+..
T Consensus 89 lT~Gi~eLv~~L~~~~~~v~liSGGF~~~i~~Va~~L-------gi~~~n------~yAN~l~fd~~Gk~~gf---d~~~ 152 (227)
T KOG1615|consen 89 LTPGIRELVSRLHARGTQVYLISGGFRQLIEPVAEQL-------GIPKSN------IYANELLFDKDGKYLGF---DTNE 152 (227)
T ss_pred cCCCHHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHh-------CCcHhh------hhhheeeeccCCccccc---ccCC
Confidence 3689999999999999999999999999999999988 555422 2333333332221 22 1100
Q ss_pred ccccccccccccCCeeeccCcHH---HHHHHhCCCCCcEEEEccccccccc
Q 014930 220 DTLAFTKVDAFIPNKIYYHGCLK---SFLQITKWNGPEVIYFGDHLFSDLR 267 (415)
Q Consensus 220 ~~~~~~~~~~l~~g~vY~~G~~~---~~~~~~g~~g~~vLYvGDhi~~Di~ 267 (415)
+ .+=+||-.+ ++++ +..-+.++||||-- +|+-
T Consensus 153 -----p--------tsdsggKa~~i~~lrk--~~~~~~~~mvGDGa-tDle 187 (227)
T KOG1615|consen 153 -----P--------TSDSGGKAEVIALLRK--NYNYKTIVMVGDGA-TDLE 187 (227)
T ss_pred -----c--------cccCCccHHHHHHHHh--CCChheeEEecCCc-cccc
Confidence 0 011144432 2333 66778999999999 9994
No 133
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=89.91 E-value=0.64 Score=53.48 Aligned_cols=108 Identities=13% Similarity=0.086 Sum_probs=67.8
Q ss_pred chhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhhhccCCCCCCCccC--CccEEEEcCCCCCCCCCCCCceeeccCcc
Q 014930 143 NGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRE--LFDVVIAQANKPDFYTSDHPFRCYDTEKD 220 (415)
Q Consensus 143 ~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~~--~FD~vi~~a~KP~FF~~~~~fr~vd~~~~ 220 (415)
-|++++.+++||++|+++.++|+.+..-+..+...+ |....+ ..+.++.+. -|..++.+
T Consensus 539 r~~v~e~I~~l~~aGI~v~miTGD~~~tA~~ia~~~-------gi~~~~~~v~~~~~~g~----------~l~~~~~~-- 599 (917)
T TIGR01116 539 RPEVADAIEKCRTAGIRVIMITGDNKETAEAICRRI-------GIFSPDEDVTFKSFTGR----------EFDEMGPA-- 599 (917)
T ss_pred chhHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHc-------CCCCCCccccceeeeHH----------HHhhCCHH--
Confidence 369999999999999999999999999999998887 432211 112222221 01111110
Q ss_pred cccccccccccCCeeeccCcHH---HHHHHhCCCCCcEEEEcccccccccccccCCc
Q 014930 221 TLAFTKVDAFIPNKIYYHGCLK---SFLQITKWNGPEVIYFGDHLFSDLRGPSKAGW 274 (415)
Q Consensus 221 ~~~~~~~~~l~~g~vY~~G~~~---~~~~~~g~~g~~vLYvGDhi~~Di~~~k~~Gw 274 (415)
.......+..||+.-+-+ ++++.++..|..|+|+||.. +|+-+-+.++.
T Consensus 600 ----~~~~~~~~~~v~ar~~P~~K~~iV~~lq~~g~~va~iGDG~-ND~~alk~AdV 651 (917)
T TIGR01116 600 ----KQRAACRSAVLFSRVEPSHKSELVELLQEQGEIVAMTGDGV-NDAPALKKADI 651 (917)
T ss_pred ----HHHHhhhcCeEEEecCHHHHHHHHHHHHhcCCeEEEecCCc-chHHHHHhCCe
Confidence 000112234466554432 45666767789999999999 99976665544
No 134
>COG4850 Uncharacterized conserved protein [Function unknown]
Probab=89.36 E-value=1.2 Score=45.21 Aligned_cols=58 Identities=21% Similarity=0.403 Sum_probs=45.8
Q ss_pred chhHHHHHHHHHHcC-CeEEEEeCCChhhhHHHHHhhhccCCCCCC----CccCCccEEEEcC
Q 014930 143 NGQVLQFVKMLREKG-KKLFLLTNSPYYFVDGGMRFMLEDSTGYTD----SWRELFDVVIAQA 200 (415)
Q Consensus 143 ~p~l~~~L~~Lr~~G-kklfLlTNS~~~yt~~vm~~l~~~~~~~g~----~W~~~FD~vi~~a 200 (415)
-|++..|++.|.+.| ..+|-+|||+|..-..+-+|+.....|+|+ .|-..||.++..+
T Consensus 198 ipGV~~~yr~l~~~~~apvfYvSnSPw~~f~~L~efi~~~~~P~GPl~L~~~g~~~~~i~~sg 260 (373)
T COG4850 198 IPGVSAWYRALTNLGDAPVFYVSNSPWQLFPTLQEFITNRNFPYGPLLLRRWGGVLDNIIESG 260 (373)
T ss_pred CCCHHHHHHHHHhcCCCCeEEecCChhHhHHHHHHHHhcCCCCCCchhHhhcCCcccccccch
Confidence 389999999999998 889999999999999988888766677663 4544556555443
No 135
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=88.70 E-value=0.34 Score=44.32 Aligned_cols=78 Identities=23% Similarity=0.310 Sum_probs=54.8
Q ss_pred HHHHHHcCCeEEEEeCCChhhhHHHHHhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCCceeeccCccccccccccc
Q 014930 150 VKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDTEKDTLAFTKVDA 229 (415)
Q Consensus 150 L~~Lr~~GkklfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~~~FD~vi~~a~KP~FF~~~~~fr~vd~~~~~~~~~~~~~ 229 (415)
++.|.+.|+++.+||.-...-+..=|.-| |... +......|-
T Consensus 44 ik~l~~~Gi~vAIITGr~s~ive~Ra~~L-------GI~~-----~~qG~~dK~-------------------------- 85 (170)
T COG1778 44 IKLLLKSGIKVAIITGRDSPIVEKRAKDL-------GIKH-----LYQGISDKL-------------------------- 85 (170)
T ss_pred HHHHHHcCCeEEEEeCCCCHHHHHHHHHc-------CCce-----eeechHhHH--------------------------
Confidence 45567899999999999999998877776 4321 011111111
Q ss_pred ccCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCce
Q 014930 230 FIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWR 275 (415)
Q Consensus 230 l~~g~vY~~G~~~~~~~~~g~~g~~vLYvGDhi~~Di~~~k~~Gwr 275 (415)
-.++++++.+++..++|.||||.+ .|+-.-++.|..
T Consensus 86 ---------~a~~~L~~~~~l~~e~~ayiGDD~-~Dlpvm~~vGls 121 (170)
T COG1778 86 ---------AAFEELLKKLNLDPEEVAYVGDDL-VDLPVMEKVGLS 121 (170)
T ss_pred ---------HHHHHHHHHhCCCHHHhhhhcCcc-ccHHHHHHcCCc
Confidence 114578889999999999999999 998555555654
No 136
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=88.48 E-value=0.96 Score=50.34 Aligned_cols=35 Identities=17% Similarity=0.132 Sum_probs=33.8
Q ss_pred hhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhh
Q 014930 144 GQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFM 178 (415)
Q Consensus 144 p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l 178 (415)
|+.++.+++||++|+++.++|..+..-+..+++.+
T Consensus 449 p~a~eaI~~l~~~Gi~v~miTGD~~~ta~~iA~~l 483 (675)
T TIGR01497 449 GGIKERFAQLRKMGIKTIMITGDNRLTAAAIAAEA 483 (675)
T ss_pred hHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHc
Confidence 69999999999999999999999999999999988
No 137
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=88.08 E-value=0.29 Score=47.15 Aligned_cols=38 Identities=18% Similarity=0.274 Sum_probs=32.2
Q ss_pred cchhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhhh
Q 014930 142 KNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFML 179 (415)
Q Consensus 142 k~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l~ 179 (415)
.-|+..++++.+++.|.++|+|||-+..--+..++.|.
T Consensus 116 aip~a~~l~~~~~~~G~~V~~iT~R~~~~r~~T~~nL~ 153 (229)
T PF03767_consen 116 AIPGALELYNYARSRGVKVFFITGRPESQREATEKNLK 153 (229)
T ss_dssp EETTHHHHHHHHHHTTEEEEEEEEEETTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHCCCeEEEEecCCchhHHHHHHHHH
Confidence 34789999999999999999999999887677666664
No 138
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=87.69 E-value=1 Score=50.49 Aligned_cols=73 Identities=15% Similarity=0.181 Sum_probs=56.2
Q ss_pred hhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCCceeeccCccccc
Q 014930 144 GQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDTEKDTLA 223 (415)
Q Consensus 144 p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~~~FD~vi~~a~KP~FF~~~~~fr~vd~~~~~~~ 223 (415)
|+-.+.+++||+.|+++.++|.-+..-++.+.+.+ |.+ - +...-+| +
T Consensus 540 ~~a~~aI~~L~~~Gi~~~mLTGDn~~~A~~iA~~l-------GId------~-v~AellP------------e------- 586 (713)
T COG2217 540 PDAKEAIAALKALGIKVVMLTGDNRRTAEAIAKEL-------GID------E-VRAELLP------------E------- 586 (713)
T ss_pred hhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHc-------ChH------h-heccCCc------------H-------
Confidence 68899999999999999999999999999999998 532 1 2233455 1
Q ss_pred ccccccccCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccc
Q 014930 224 FTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDL 266 (415)
Q Consensus 224 ~~~~~~l~~g~vY~~G~~~~~~~~~g~~g~~vLYvGDhi~~Di 266 (415)
.-. +..+.+.-+|..|+||||-| +|-
T Consensus 587 ---------------dK~-~~V~~l~~~g~~VamVGDGI-NDA 612 (713)
T COG2217 587 ---------------DKA-EIVRELQAEGRKVAMVGDGI-NDA 612 (713)
T ss_pred ---------------HHH-HHHHHHHhcCCEEEEEeCCc-hhH
Confidence 112 34444556788999999999 997
No 139
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=87.54 E-value=1.2 Score=43.56 Aligned_cols=31 Identities=16% Similarity=0.135 Sum_probs=25.1
Q ss_pred chhHHHHHHHHHHcCCeEEEEeCCChhhhHH
Q 014930 143 NGQVLQFVKMLREKGKKLFLLTNSPYYFVDG 173 (415)
Q Consensus 143 ~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~ 173 (415)
-|+..++|++|+++|+++.++||++..-...
T Consensus 20 ~~ga~e~l~~L~~~g~~~~~~Tnns~~~~~~ 50 (279)
T TIGR01452 20 VPGAPELLDRLARAGKAALFVTNNSTKSRAE 50 (279)
T ss_pred CcCHHHHHHHHHHCCCeEEEEeCCCCCCHHH
Confidence 4679999999999999999999976443333
No 140
>COG4996 Predicted phosphatase [General function prediction only]
Probab=85.92 E-value=2.8 Score=37.44 Aligned_cols=58 Identities=17% Similarity=0.072 Sum_probs=45.6
Q ss_pred HhcCcccccccchhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhhhccCCCCCCCccCCccEEEE
Q 014930 132 ILSDPNRYLVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIA 198 (415)
Q Consensus 132 v~~np~kYi~k~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~~~FD~vi~ 198 (415)
+..+-+.=|+--|.++++|+.+|.+|.-+-++|-+.++-+-..+.-+ +...||+.+|.
T Consensus 32 i~Ds~G~ev~L~~~v~~~l~warnsG~i~~~~sWN~~~kA~~aLral---------~~~~yFhy~Vi 89 (164)
T COG4996 32 IEDSKGREVHLFPDVKETLKWARNSGYILGLASWNFEDKAIKALRAL---------DLLQYFHYIVI 89 (164)
T ss_pred eecCCCeEEEEcHHHHHHHHHHHhCCcEEEEeecCchHHHHHHHHHh---------chhhhEEEEEe
Confidence 33444555666788999999999999988888888888877777766 66789998775
No 141
>COG5610 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=84.87 E-value=2.3 Score=45.02 Aligned_cols=116 Identities=19% Similarity=0.266 Sum_probs=76.1
Q ss_pred ccccc-ccchhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCCcee
Q 014930 136 PNRYL-VKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRC 214 (415)
Q Consensus 136 p~kYi-~k~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~~~FD~vi~~a~KP~FF~~~~~fr~ 214 (415)
.||=+ .|..+..++.+...+.||+|+|+|.= -+-..+++-++..+ |.+ |. +.|+..
T Consensus 93 tEKevLypn~~~~eL~e~ai~n~krVIlISDM--Ylps~Il~~~L~s~---g~d----------------~~--nipiY~ 149 (635)
T COG5610 93 TEKEVLYPNKKNIELVEEAIKNEKRVILISDM--YLPSSILRTFLNSF---GPD----------------FN--NIPIYM 149 (635)
T ss_pred cceeEeeccccchHHHHHHHhCCCeEEEEecc--cCcHHHHHHHHHhc---CCC----------------cc--Cceeee
Confidence 44433 46678889999999999999999753 33444555444222 222 11 122221
Q ss_pred eccCcccccccccccccCCeeeccCc-HHHHHHHhCCCCCcEEEEcccccccccccccCCceEEEEeccchhHHH
Q 014930 215 YDTEKDTLAFTKVDAFIPNKIYYHGC-LKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIHELESEIR 288 (415)
Q Consensus 215 vd~~~~~~~~~~~~~l~~g~vY~~G~-~~~~~~~~g~~g~~vLYvGDhi~~Di~~~k~~GwrT~lVvpEL~~Ei~ 288 (415)
-.. ..+.++ .|+ .+.+++..++++++.+-+||+..+|++.|+..|.-|..-+-||..=++
T Consensus 150 S~e----------~rl~Kn----Sg~LFk~Vlk~EnVd~~~w~H~GDN~~aD~l~pk~LgI~Tlf~~s~l~~~ee 210 (635)
T COG5610 150 SSE----------FRLKKN----SGNLFKAVLKLENVDPKKWIHCGDNWVADYLKPKNLGISTLFYISQLLPYEE 210 (635)
T ss_pred cce----------eehhcc----cchHHHHHHhhcCCChhheEEecCchhhhhcCccccchhHHHHHHHhhhHhh
Confidence 100 011222 344 567888999999999999999999999999999998776666655444
No 142
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=84.63 E-value=2.9 Score=36.76 Aligned_cols=65 Identities=8% Similarity=0.123 Sum_probs=45.5
Q ss_pred chhhHHHHhcCccccc--ccchhHHHHHHHHHHcCCeEEEEeCCChhhhH------------HHHHhhhccCCCCCCCcc
Q 014930 125 RGLVHRGILSDPNRYL--VKNGQVLQFVKMLREKGKKLFLLTNSPYYFVD------------GGMRFMLEDSTGYTDSWR 190 (415)
Q Consensus 125 ~G~lk~~v~~np~kYi--~k~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~------------~vm~~l~~~~~~~g~~W~ 190 (415)
+|++- ..+.+.|. ...+++.+.|++|+++|.+++++|.-+..... .+..+|-. |.
T Consensus 9 DGTL~---~~~~~~y~~~~~~~~~ie~L~~l~~~G~~IiiaTGR~~~~~~~n~~~i~~~~~~~t~~wL~k--------~~ 77 (126)
T TIGR01689 9 DNTIT---LTENGDYANVAPILAVIEKLRHYKALGFEIVISSSRNMRTYEGNVGKINIHTLPIIILWLNQ--------HN 77 (126)
T ss_pred CCCcc---cCCCCcccccccCHHHHHHHHHHHHCCCEEEEECCCCchhhhccccccchhhHHHHHHHHHH--------cC
Confidence 56662 22334554 35678999999999999999999999988876 77777742 33
Q ss_pred CCccEEEEcC
Q 014930 191 ELFDVVIAQA 200 (415)
Q Consensus 191 ~~FD~vi~~a 200 (415)
=-||-++.+.
T Consensus 78 ipYd~l~~~k 87 (126)
T TIGR01689 78 VPYDEIYVGK 87 (126)
T ss_pred CCCceEEeCC
Confidence 3356666654
No 143
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=83.06 E-value=7.8 Score=38.55 Aligned_cols=36 Identities=14% Similarity=-0.023 Sum_probs=31.0
Q ss_pred hhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhhh
Q 014930 144 GQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFML 179 (415)
Q Consensus 144 p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l~ 179 (415)
|+...+++.+++.|.++|+|||-+...-+.-+..|-
T Consensus 148 p~al~ly~~l~~~G~kIf~VSgR~e~~r~aT~~NL~ 183 (275)
T TIGR01680 148 PETLKNYNKLVSLGFKIIFLSGRLKDKQAVTEANLK 183 (275)
T ss_pred hHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHH
Confidence 577788889999999999999999887777777774
No 144
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=81.56 E-value=3.6 Score=36.48 Aligned_cols=54 Identities=11% Similarity=0.167 Sum_probs=40.3
Q ss_pred cccccccchhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhhhccCCCCCCCccCCccEEEE
Q 014930 136 PNRYLVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIA 198 (415)
Q Consensus 136 p~kYi~k~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~~~FD~vi~ 198 (415)
-..+|.+-|++.++|+.|.+. ..+++.|.+...|++.+++.+. +. ..+|+-++.
T Consensus 31 ~~~~v~~RP~l~~FL~~l~~~-~ev~i~T~~~~~ya~~v~~~ld-------p~-~~~~~~~~~ 84 (159)
T PF03031_consen 31 GGYYVKLRPGLDEFLEELSKH-YEVVIWTSASEEYAEPVLDALD-------PN-GKLFSRRLY 84 (159)
T ss_dssp EEEEEEE-TTHHHHHHHHHHH-CEEEEE-SS-HHHHHHHHHHHT-------TT-TSSEEEEEE
T ss_pred cceeEeeCchHHHHHHHHHHh-ceEEEEEeehhhhhhHHHHhhh-------hh-ccccccccc
Confidence 356777889999999999655 8999999999999999999983 22 345665553
No 145
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=81.43 E-value=3.6 Score=45.91 Aligned_cols=78 Identities=17% Similarity=0.150 Sum_probs=57.8
Q ss_pred hhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCCceeeccCccccc
Q 014930 144 GQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDTEKDTLA 223 (415)
Q Consensus 144 p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~~~FD~vi~~a~KP~FF~~~~~fr~vd~~~~~~~ 223 (415)
|+.++.+++||+.|+++.++|.-+..-+..+.+.+ |.+ + +|.+-.| +. +
T Consensus 444 ~~a~e~I~~Lr~~GI~vvMiTGDn~~TA~aIA~el-------GI~-----~----------v~A~~~P------ed-K-- 492 (673)
T PRK14010 444 DGLVERFRELREMGIETVMCTGDNELTAATIAKEA-------GVD-----R----------FVAECKP------ED-K-- 492 (673)
T ss_pred HHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHc-------CCc-----e----------EEcCCCH------HH-H--
Confidence 69999999999999999999999999999999988 543 1 2222222 10 0
Q ss_pred ccccccccCCeeeccCcHHHHHHHhCCCCCcEEEEccccccccccccc
Q 014930 224 FTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSK 271 (415)
Q Consensus 224 ~~~~~~l~~g~vY~~G~~~~~~~~~g~~g~~vLYvGDhi~~Di~~~k~ 271 (415)
.++.+.+.-.|..|.|+||-+ +|.-+-++
T Consensus 493 ------------------~~iV~~lQ~~G~~VaMtGDGv-NDAPALa~ 521 (673)
T PRK14010 493 ------------------INVIREEQAKGHIVAMTGDGT-NDAPALAE 521 (673)
T ss_pred ------------------HHHHHHHHhCCCEEEEECCCh-hhHHHHHh
Confidence 144555555788999999999 99854333
No 146
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=80.53 E-value=2.1 Score=41.57 Aligned_cols=36 Identities=19% Similarity=0.064 Sum_probs=30.3
Q ss_pred chhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhh
Q 014930 143 NGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFM 178 (415)
Q Consensus 143 ~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l 178 (415)
-|+..++|++||++|++++++||++..-...+...+
T Consensus 23 ~~~a~~al~~l~~~G~~~~~~Tn~~~~~~~~~~~~l 58 (257)
T TIGR01458 23 VPGSQEAVKRLRGASVKVRFVTNTTKESKQDLLERL 58 (257)
T ss_pred CCCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHH
Confidence 578999999999999999999998887655555555
No 147
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=80.10 E-value=2.6 Score=40.77 Aligned_cols=52 Identities=12% Similarity=0.149 Sum_probs=34.5
Q ss_pred chhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhhhccCCCCCCCccCCccEEEEcC
Q 014930 143 NGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQA 200 (415)
Q Consensus 143 ~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~~~FD~vi~~a 200 (415)
-|+..++|++|+++|++++++||+...-...+...+- ..++....|-||+.+
T Consensus 19 i~~a~~~l~~l~~~g~~~~~~Tnn~~r~~~~~~~~l~------~~g~~~~~~~iit~~ 70 (249)
T TIGR01457 19 IPEAETFVHELQKRDIPYLFVTNNSTRTPESVAEMLA------SFDIPATLETVFTAS 70 (249)
T ss_pred CcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHH------HcCCCCChhhEeeHH
Confidence 3578999999999999999999955444444444442 112323346677665
No 148
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=79.94 E-value=4.2 Score=45.42 Aligned_cols=35 Identities=14% Similarity=0.024 Sum_probs=33.8
Q ss_pred hhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhh
Q 014930 144 GQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFM 178 (415)
Q Consensus 144 p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l 178 (415)
|++++.+++||++|+++.++|.-+..-+..+.+.+
T Consensus 448 ~~~~eai~~Lr~~GI~vvMiTGDn~~TA~aIA~el 482 (679)
T PRK01122 448 PGIKERFAELRKMGIKTVMITGDNPLTAAAIAAEA 482 (679)
T ss_pred hhHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHc
Confidence 79999999999999999999999999999999987
No 149
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=78.21 E-value=3.1 Score=38.86 Aligned_cols=34 Identities=15% Similarity=0.052 Sum_probs=28.6
Q ss_pred HHHHHHHhCCCCCcEEEEcccccccccccccCCce
Q 014930 241 LKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWR 275 (415)
Q Consensus 241 ~~~~~~~~g~~g~~vLYvGDhi~~Di~~~k~~Gwr 275 (415)
+..+++.+|++..+|++|||.. +|+---+.+|+-
T Consensus 184 l~~l~~~lgi~~~~vi~~GD~~-NDi~ml~~ag~~ 217 (221)
T TIGR02463 184 ANWLKATYNQPDVKTLGLGDGP-NDLPLLEVADYA 217 (221)
T ss_pred HHHHHHHhCCCCCcEEEECCCH-HHHHHHHhCCce
Confidence 5688999999999999999999 999665556654
No 150
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=76.40 E-value=4.6 Score=40.58 Aligned_cols=27 Identities=22% Similarity=0.444 Sum_probs=24.3
Q ss_pred chhHHHHHHHHHHcC-CeEEEEeCCChh
Q 014930 143 NGQVLQFVKMLREKG-KKLFLLTNSPYY 169 (415)
Q Consensus 143 ~p~l~~~L~~Lr~~G-kklfLlTNS~~~ 169 (415)
.|.|.++++.+|+.| +++|||||+.-+
T Consensus 94 y~~L~elI~~~k~~g~~~tflvTNgslp 121 (296)
T COG0731 94 YPNLGELIEEIKKRGKKTTFLVTNGSLP 121 (296)
T ss_pred ccCHHHHHHHHHhcCCceEEEEeCCChH
Confidence 367999999999999 799999999983
No 151
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=73.68 E-value=10 Score=43.37 Aligned_cols=73 Identities=22% Similarity=0.199 Sum_probs=56.0
Q ss_pred hhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCCceeeccCccccc
Q 014930 144 GQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDTEKDTLA 223 (415)
Q Consensus 144 p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~~~FD~vi~~a~KP~FF~~~~~fr~vd~~~~~~~ 223 (415)
|+.......||+.|+++.++|+-++.=++.+.+.+ | +|.|... -+| .
T Consensus 726 ~~a~~av~~Lk~~Gi~v~mLTGDn~~aA~svA~~V-------G------i~~V~ae-v~P------------~------- 772 (951)
T KOG0207|consen 726 PDAALAVAELKSMGIKVVMLTGDNDAAARSVAQQV-------G------IDNVYAE-VLP------------E------- 772 (951)
T ss_pred hhHHHHHHHHHhcCceEEEEcCCCHHHHHHHHHhh-------C------cceEEec-cCc------------h-------
Confidence 67788899999999999999999999999999987 4 4545544 466 1
Q ss_pred ccccccccCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccc
Q 014930 224 FTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDL 266 (415)
Q Consensus 224 ~~~~~~l~~g~vY~~G~~~~~~~~~g~~g~~vLYvGDhi~~Di 266 (415)
+-. +..+.+.-.+..|.||||-| +|-
T Consensus 773 ---------------~K~-~~Ik~lq~~~~~VaMVGDGI-NDa 798 (951)
T KOG0207|consen 773 ---------------QKA-EKIKEIQKNGGPVAMVGDGI-NDA 798 (951)
T ss_pred ---------------hhH-HHHHHHHhcCCcEEEEeCCC-Ccc
Confidence 111 34444545668899999999 996
No 152
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=73.07 E-value=5.3 Score=45.81 Aligned_cols=99 Identities=13% Similarity=0.104 Sum_probs=65.1
Q ss_pred hhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCCceeeccCccccc
Q 014930 144 GQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDTEKDTLA 223 (415)
Q Consensus 144 p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~~~FD~vi~~a~KP~FF~~~~~fr~vd~~~~~~~ 223 (415)
|+.++.+++||++|+++.++|.-+..-+..+.+.+ |..= +-+++++. +...+.
T Consensus 518 ~~~~~aI~~l~~aGI~vvmiTGD~~~tA~aIA~~l-------GI~~----~~v~~g~~----------l~~~~~------ 570 (867)
T TIGR01524 518 ESTKEAIAALFKNGINVKVLTGDNEIVTARICQEV-------GIDA----NDFLLGAD----------IEELSD------ 570 (867)
T ss_pred hhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHc-------CCCC----CCeeecHh----------hhhCCH------
Confidence 68999999999999999999999999999999987 4320 11333321 111110
Q ss_pred ccccc-cccCCeeeccCcHH---HHHHHhCCCCCcEEEEccccccccccccc
Q 014930 224 FTKVD-AFIPNKIYYHGCLK---SFLQITKWNGPEVIYFGDHLFSDLRGPSK 271 (415)
Q Consensus 224 ~~~~~-~l~~g~vY~~G~~~---~~~~~~g~~g~~vLYvGDhi~~Di~~~k~ 271 (415)
.+.. ..++..||+.-+-+ ++.+.+.-.|..|.|+||-+ +|.-+-++
T Consensus 571 -~el~~~~~~~~vfAr~~Pe~K~~iV~~lq~~G~vVam~GDGv-NDapALk~ 620 (867)
T TIGR01524 571 -EELARELRKYHIFARLTPMQKSRIIGLLKKAGHTVGFLGDGI-NDAPALRK 620 (867)
T ss_pred -HHHHHHhhhCeEEEECCHHHHHHHHHHHHhCCCEEEEECCCc-ccHHHHHh
Confidence 1111 12345677665533 34555556788999999999 99854443
No 153
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=72.89 E-value=4.1 Score=40.91 Aligned_cols=35 Identities=17% Similarity=0.192 Sum_probs=29.2
Q ss_pred chhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHh
Q 014930 143 NGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRF 177 (415)
Q Consensus 143 ~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~ 177 (415)
-|+.+++|+.|++.||+++++||+...--..-|+-
T Consensus 40 ipGs~e~l~~L~~~gK~i~fvTNNStksr~~y~kK 74 (306)
T KOG2882|consen 40 IPGSPEALNLLKSLGKQIIFVTNNSTKSREQYMKK 74 (306)
T ss_pred CCChHHHHHHHHHcCCcEEEEeCCCcchHHHHHHH
Confidence 47999999999999999999999887655555543
No 154
>COG4087 Soluble P-type ATPase [General function prediction only]
Probab=72.38 E-value=13 Score=33.21 Aligned_cols=90 Identities=17% Similarity=0.150 Sum_probs=58.0
Q ss_pred hHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCCceeeccCcccccc
Q 014930 145 QVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDTEKDTLAF 224 (415)
Q Consensus 145 ~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~~~FD~vi~~a~KP~FF~~~~~fr~vd~~~~~~~~ 224 (415)
++++.++.|++. .++++.|.-...+....++.+ |.+-.. |..+| |++.
T Consensus 34 ev~e~iqeL~d~-V~i~IASgDr~gsl~~lae~~-------gi~~~r----v~a~a---------------~~e~----- 81 (152)
T COG4087 34 EVSETIQELHDM-VDIYIASGDRKGSLVQLAEFV-------GIPVER----VFAGA---------------DPEM----- 81 (152)
T ss_pred hhHHHHHHHHHh-heEEEecCCcchHHHHHHHHc-------CCceee----eeccc---------------CHHH-----
Confidence 445567777777 889999999998888888876 443211 11111 1110
Q ss_pred cccccccCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCceEEEEeccc
Q 014930 225 TKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIHEL 283 (415)
Q Consensus 225 ~~~~~l~~g~vY~~G~~~~~~~~~g~~g~~vLYvGDhi~~Di~~~k~~GwrT~lVvpEL 283 (415)
=..+++-++-++..|.+|||-+ +|++.-+.+..--+-|-+|-
T Consensus 82 ----------------K~~ii~eLkk~~~k~vmVGnGa-ND~laLr~ADlGI~tiq~e~ 123 (152)
T COG4087 82 ----------------KAKIIRELKKRYEKVVMVGNGA-NDILALREADLGICTIQQEG 123 (152)
T ss_pred ----------------HHHHHHHhcCCCcEEEEecCCc-chHHHhhhcccceEEeccCC
Confidence 0245666666889999999999 99988776533333344443
No 155
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=70.80 E-value=12 Score=31.52 Aligned_cols=27 Identities=19% Similarity=0.257 Sum_probs=21.1
Q ss_pred EEEEeCCChhhhHHHHHhhhccCCCCC
Q 014930 160 LFLLTNSPYYFVDGGMRFMLEDSTGYT 186 (415)
Q Consensus 160 lfLlTNS~~~yt~~vm~~l~~~~~~~g 186 (415)
+|-||||+|.....+.+++-....|.|
T Consensus 2 f~YvS~SPwnly~~l~~Fl~~~~~P~G 28 (100)
T PF09949_consen 2 FFYVSNSPWNLYPFLRDFLRRNGFPAG 28 (100)
T ss_pred EEEEcCCHHHHHHHHHHHHHhcCCCCC
Confidence 688999999999999999854334444
No 156
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=70.63 E-value=7 Score=35.25 Aligned_cols=36 Identities=19% Similarity=0.338 Sum_probs=32.3
Q ss_pred chhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhh
Q 014930 143 NGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFM 178 (415)
Q Consensus 143 ~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l 178 (415)
.|++.+++++++++|.+++++|..++.-+.....++
T Consensus 29 ~~~~~~a~~~l~~~G~~ivy~TGRp~~~~~~t~~~l 64 (157)
T smart00775 29 HPGVAKLYRDIQNNGYKILYLTARPIGQADRTRSYL 64 (157)
T ss_pred CHHHHHHHHHHHHcCCeEEEEcCCcHHHHHHHHHHH
Confidence 589999999999999999999999999987666665
No 157
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=70.03 E-value=9.3 Score=44.23 Aligned_cols=100 Identities=14% Similarity=0.050 Sum_probs=64.8
Q ss_pred hhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCCceeeccCccccc
Q 014930 144 GQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDTEKDTLA 223 (415)
Q Consensus 144 p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~~~FD~vi~~a~KP~FF~~~~~fr~vd~~~~~~~ 223 (415)
|+.++.+++||++|+++.++|.-+..-+..+...+ |.. +-=+.++.+.. |+..+.
T Consensus 582 ~~~~~aI~~l~~aGI~v~miTGD~~~tA~~iA~~~-------GI~--~~~~~vi~G~~----------~~~l~~------ 636 (941)
T TIGR01517 582 PGVREAVQECQRAGITVRMVTGDNIDTAKAIARNC-------GIL--TFGGLAMEGKE----------FRRLVY------ 636 (941)
T ss_pred hhHHHHHHHHHHCCCEEEEECCCChHHHHHHHHHc-------CCC--CCCceEeeHHH----------hhhCCH------
Confidence 69999999999999999999999999999998877 321 00012444321 111110
Q ss_pred ccccc-cccCCeeeccCcHH---HHHHHhCCCCCcEEEEcccccccccccc
Q 014930 224 FTKVD-AFIPNKIYYHGCLK---SFLQITKWNGPEVIYFGDHLFSDLRGPS 270 (415)
Q Consensus 224 ~~~~~-~l~~g~vY~~G~~~---~~~~~~g~~g~~vLYvGDhi~~Di~~~k 270 (415)
.+.. -+.+..||+.-+-+ ++.+.+.-.|..|+|+||-+ +|.-+-+
T Consensus 637 -~el~~~i~~~~Vfar~sPe~K~~iV~~lq~~g~vVam~GDGv-NDapALk 685 (941)
T TIGR01517 637 -EEMDPILPKLRVLARSSPLDKQLLVLMLKDMGEVVAVTGDGT-NDAPALK 685 (941)
T ss_pred -HHHHHHhccCeEEEECCHHHHHHHHHHHHHCCCEEEEECCCC-chHHHHH
Confidence 0111 12345677666533 24555555788999999999 9985433
No 158
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=68.37 E-value=3.2 Score=38.75 Aligned_cols=35 Identities=29% Similarity=0.338 Sum_probs=30.1
Q ss_pred HHHHHHHhCCCCCcEEEEcccccccccccccCCceE
Q 014930 241 LKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRT 276 (415)
Q Consensus 241 ~~~~~~~~g~~g~~vLYvGDhi~~Di~~~k~~GwrT 276 (415)
+..+++.+|++++++++|||.. +|+--.+.+|+-.
T Consensus 162 l~~l~~~~~i~~~~~i~~GD~~-NDi~m~~~ag~~v 196 (230)
T PRK01158 162 LKKLAELMGIDPEEVAAIGDSE-NDLEMFEVAGFGV 196 (230)
T ss_pred HHHHHHHhCCCHHHEEEECCch-hhHHHHHhcCceE
Confidence 5688999999999999999999 9997777777743
No 159
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=65.73 E-value=9.5 Score=35.52 Aligned_cols=34 Identities=18% Similarity=0.153 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhh
Q 014930 145 QVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFM 178 (415)
Q Consensus 145 ~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l 178 (415)
...++|++|+++|++++++||.+...+..++..+
T Consensus 20 ~~~~~l~~l~~~gi~~~i~TgR~~~~~~~~~~~l 53 (221)
T TIGR02463 20 PAAPWLTRLQEAGIPVILCTSKTAAEVEYLQKAL 53 (221)
T ss_pred HHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHc
Confidence 4789999999999999999999999999988876
No 160
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=64.26 E-value=4.5 Score=37.59 Aligned_cols=35 Identities=17% Similarity=0.180 Sum_probs=30.4
Q ss_pred HHHHHHHhCCCCCcEEEEcccccccccccccCCceE
Q 014930 241 LKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRT 276 (415)
Q Consensus 241 ~~~~~~~~g~~g~~vLYvGDhi~~Di~~~k~~GwrT 276 (415)
+..+++.+|++.++|++|||.. +|+--.+.+|+-.
T Consensus 154 i~~l~~~~~i~~~~~i~~GD~~-NDi~m~~~ag~~v 188 (225)
T TIGR01482 154 VKKLKEKLGIKPGETLVCGDSE-NDIDLFEVPGFGV 188 (225)
T ss_pred HHHHHHHhCCCHHHEEEECCCH-hhHHHHHhcCceE
Confidence 5678899999999999999998 9998887788753
No 161
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=62.27 E-value=11 Score=43.50 Aligned_cols=97 Identities=12% Similarity=0.124 Sum_probs=64.2
Q ss_pred hhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCCceeeccCccccc
Q 014930 144 GQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDTEKDTLA 223 (415)
Q Consensus 144 p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~~~FD~vi~~a~KP~FF~~~~~fr~vd~~~~~~~ 223 (415)
|+.++.+++|+++|+++.++|.-+..-+..+.+-+ |.+ -+-|+++.. +...+.
T Consensus 553 ~~a~~aI~~l~~aGI~v~miTGD~~~tA~~IA~~l-------GI~----~~~v~~G~e----------l~~l~~------ 605 (902)
T PRK10517 553 ETTAPALKALKASGVTVKILTGDSELVAAKVCHEV-------GLD----AGEVLIGSD----------IETLSD------ 605 (902)
T ss_pred hhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHc-------CCC----ccCceeHHH----------HHhCCH------
Confidence 68999999999999999999999999999999987 432 122333321 111111
Q ss_pred ccccc-cccCCeeeccCcHH---HHHHHhCCCCCcEEEEccccccccccc
Q 014930 224 FTKVD-AFIPNKIYYHGCLK---SFLQITKWNGPEVIYFGDHLFSDLRGP 269 (415)
Q Consensus 224 ~~~~~-~l~~g~vY~~G~~~---~~~~~~g~~g~~vLYvGDhi~~Di~~~ 269 (415)
.+.. ..++..||+.-+-+ ++.+.+...|..|.|+||-+ +|.-+-
T Consensus 606 -~el~~~~~~~~VfAr~sPe~K~~IV~~Lq~~G~vVam~GDGv-NDaPAL 653 (902)
T PRK10517 606 -DELANLAERTTLFARLTPMHKERIVTLLKREGHVVGFMGDGI-NDAPAL 653 (902)
T ss_pred -HHHHHHHhhCcEEEEcCHHHHHHHHHHHHHCCCEEEEECCCc-chHHHH
Confidence 0111 12344566655532 35555556788999999999 998543
No 162
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=61.73 E-value=12 Score=43.12 Aligned_cols=98 Identities=15% Similarity=0.135 Sum_probs=64.3
Q ss_pred hhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCCceeeccCccccc
Q 014930 144 GQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDTEKDTLA 223 (415)
Q Consensus 144 p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~~~FD~vi~~a~KP~FF~~~~~fr~vd~~~~~~~ 223 (415)
|+.++.+++||++|+++.++|.-+..-+..+.+.+ |.+ + +-++++. -+...+.
T Consensus 553 ~~a~~aI~~l~~aGI~v~miTGD~~~tA~aIA~~l-------GI~--~--~~vi~G~----------el~~~~~------ 605 (903)
T PRK15122 553 ESAAPAIAALRENGVAVKVLTGDNPIVTAKICREV-------GLE--P--GEPLLGT----------EIEAMDD------ 605 (903)
T ss_pred HHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHc-------CCC--C--CCccchH----------hhhhCCH------
Confidence 69999999999999999999999999999999887 432 0 1133222 1111111
Q ss_pred ccccc-cccCCeeeccCcHH---HHHHHhCCCCCcEEEEcccccccccccc
Q 014930 224 FTKVD-AFIPNKIYYHGCLK---SFLQITKWNGPEVIYFGDHLFSDLRGPS 270 (415)
Q Consensus 224 ~~~~~-~l~~g~vY~~G~~~---~~~~~~g~~g~~vLYvGDhi~~Di~~~k 270 (415)
.... ..++..||+.=+-+ ++.+.+.-.|.-|.|+||-+ +|.-+-+
T Consensus 606 -~el~~~v~~~~VfAr~sPe~K~~iV~~Lq~~G~vVamtGDGv-NDaPALk 654 (903)
T PRK15122 606 -AALAREVEERTVFAKLTPLQKSRVLKALQANGHTVGFLGDGI-NDAPALR 654 (903)
T ss_pred -HHHHHHhhhCCEEEEeCHHHHHHHHHHHHhCCCEEEEECCCc-hhHHHHH
Confidence 0111 12344577655532 34555556788999999999 9985433
No 163
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=61.49 E-value=11 Score=35.94 Aligned_cols=37 Identities=22% Similarity=0.163 Sum_probs=30.0
Q ss_pred chhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhhh
Q 014930 143 NGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFML 179 (415)
Q Consensus 143 ~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l~ 179 (415)
-|+..++|..|+++|++++++||+.-.-...+.+.|.
T Consensus 16 ~~~a~e~i~~l~~~g~~~~~~tN~~~~~~~~~~~~l~ 52 (236)
T TIGR01460 16 IPGAAEALNRLRAKGKPVVFLTNNSSRSEEDYAEKLS 52 (236)
T ss_pred CcCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHH
Confidence 4688999999999999999999998666665555553
No 164
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=61.44 E-value=7.1 Score=37.37 Aligned_cols=45 Identities=18% Similarity=0.204 Sum_probs=34.7
Q ss_pred HHHHHHHhCCCCCcEEEEcccccccccccccCCceEEEEeccchhHH
Q 014930 241 LKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIHELESEI 287 (415)
Q Consensus 241 ~~~~~~~~g~~g~~vLYvGDhi~~Di~~~k~~GwrT~lVvpEL~~Ei 287 (415)
+..+++.+|++.++|++|||.. +|+--.+..|..+++| .--..|+
T Consensus 172 l~~l~~~~~i~~~~~i~~GD~~-ND~~ml~~~~~~~va~-~na~~~~ 216 (249)
T TIGR01485 172 LQYLLQKLAMEPSQTLVCGDSG-NDIELFEIGSVRGVIV-SNAQEEL 216 (249)
T ss_pred HHHHHHHcCCCccCEEEEECCh-hHHHHHHccCCcEEEE-CCCHHHH
Confidence 5678889999999999999999 9997776666667766 3334443
No 165
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=58.24 E-value=7.8 Score=37.69 Aligned_cols=37 Identities=19% Similarity=0.209 Sum_probs=31.1
Q ss_pred HHHHHHHhCCCC-CcEEEEcccccccccccccCCceEEE
Q 014930 241 LKSFLQITKWNG-PEVIYFGDHLFSDLRGPSKAGWRTAA 278 (415)
Q Consensus 241 ~~~~~~~~g~~g-~~vLYvGDhi~~Di~~~k~~GwrT~l 278 (415)
+..+++.+|+++ ++|++|||.. +|+--.+.+|...+.
T Consensus 195 l~~l~~~~~i~~~~~v~~~GDs~-NDi~m~~~ag~~vam 232 (273)
T PRK00192 195 VRWLKELYRRQDGVETIALGDSP-NDLPMLEAADIAVVV 232 (273)
T ss_pred HHHHHHHHhccCCceEEEEcCCh-hhHHHHHhCCeeEEe
Confidence 567889999999 9999999999 999877777765443
No 166
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=58.03 E-value=16 Score=33.44 Aligned_cols=36 Identities=19% Similarity=0.265 Sum_probs=32.8
Q ss_pred cchhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHh
Q 014930 142 KNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRF 177 (415)
Q Consensus 142 k~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~ 177 (415)
.+|.+.++|++|++.|.+++++|+.+...+..++..
T Consensus 18 ~~~~~~~~l~~l~~~g~~~~i~TGR~~~~~~~~~~~ 53 (204)
T TIGR01484 18 LSPETIEALERLREAGVKVVLVTGRSLAEIKELLKQ 53 (204)
T ss_pred CCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHh
Confidence 457899999999999999999999999999987765
No 167
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=57.59 E-value=45 Score=39.28 Aligned_cols=35 Identities=11% Similarity=0.043 Sum_probs=32.9
Q ss_pred hhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhh
Q 014930 144 GQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFM 178 (415)
Q Consensus 144 p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l 178 (415)
|+.++.+++||++|+++.++|.-+..-+..+..-+
T Consensus 659 ~~~~~~I~~l~~agi~v~miTGD~~~TA~~iA~~~ 693 (1054)
T TIGR01657 659 PDTKEVIKELKRASIRTVMITGDNPLTAVHVAREC 693 (1054)
T ss_pred ccHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHc
Confidence 68999999999999999999999999999988876
No 168
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=57.56 E-value=6.1 Score=36.75 Aligned_cols=36 Identities=19% Similarity=0.267 Sum_probs=30.0
Q ss_pred HHHHHHHhCCCCCcEEEEcccccccccccccCCceEE
Q 014930 241 LKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTA 277 (415)
Q Consensus 241 ~~~~~~~~g~~g~~vLYvGDhi~~Di~~~k~~GwrT~ 277 (415)
++.+++.+|++.+++++|||.. +|+.-.+.+|+-.+
T Consensus 152 i~~l~~~~~i~~~~~i~iGDs~-ND~~ml~~ag~~va 187 (215)
T TIGR01487 152 VEKLKELLGIKPEEVAAIGDSE-NDIDLFRVVGFKVA 187 (215)
T ss_pred HHHHHHHhCCCHHHEEEECCCH-HHHHHHHhCCCeEE
Confidence 5678889999999999999999 99987777775433
No 169
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=57.47 E-value=18 Score=40.82 Aligned_cols=103 Identities=12% Similarity=0.077 Sum_probs=62.4
Q ss_pred hhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCCceeeccCccccc
Q 014930 144 GQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDTEKDTLA 223 (415)
Q Consensus 144 p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~~~FD~vi~~a~KP~FF~~~~~fr~vd~~~~~~~ 223 (415)
|+.++.+++||++|+++.++|.-+..-+..+.+.+ |.. + + ++++.. ..++... + .+.
T Consensus 445 ~~a~~aI~~l~~aGI~v~miTGD~~~tA~~IA~~l-------GI~--~--~-~~~~~~----l~~~~~~---~----~~~ 501 (755)
T TIGR01647 445 HDTKETIERARHLGVEVKMVTGDHLAIAKETARRL-------GLG--T--N-IYTADV----LLKGDNR---D----DLP 501 (755)
T ss_pred hhHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHc-------CCC--C--C-CcCHHH----hcCCcch---h----hCC
Confidence 69999999999999999999999999999999987 331 0 0 111100 0000000 0 000
Q ss_pred ccccc-cccCCeeeccCcHH---HHHHHhCCCCCcEEEEcccccccccccc
Q 014930 224 FTKVD-AFIPNKIYYHGCLK---SFLQITKWNGPEVIYFGDHLFSDLRGPS 270 (415)
Q Consensus 224 ~~~~~-~l~~g~vY~~G~~~---~~~~~~g~~g~~vLYvGDhi~~Di~~~k 270 (415)
..... -++...||++=+-+ .+.+.+.-+|..|.|+||-+ +|.-+-+
T Consensus 502 ~~~~~~~~~~~~vfAr~~Pe~K~~iV~~lq~~G~~VamvGDGv-NDapAL~ 551 (755)
T TIGR01647 502 SGELGEMVEDADGFAEVFPEHKYEIVEILQKRGHLVGMTGDGV-NDAPALK 551 (755)
T ss_pred HHHHHHHHHhCCEEEecCHHHHHHHHHHHHhcCCEEEEEcCCc-ccHHHHH
Confidence 00111 12334466555432 34555556788999999999 9975433
No 170
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=56.77 E-value=8.4 Score=36.94 Aligned_cols=41 Identities=22% Similarity=0.306 Sum_probs=31.4
Q ss_pred HHHHHHHhCCCCCcEEEEcccccccccccccC-------CceEEEEecc
Q 014930 241 LKSFLQITKWNGPEVIYFGDHLFSDLRGPSKA-------GWRTAAIIHE 282 (415)
Q Consensus 241 ~~~~~~~~g~~g~~vLYvGDhi~~Di~~~k~~-------GwrT~lVvpE 282 (415)
+..+++.++..+.+++||||.. +|+-..+.. |-.++.|.+.
T Consensus 172 ~~~~~~~~~~~~~~~i~iGD~~-~D~~~~~~~~~~~~~~g~~~v~v~~g 219 (244)
T TIGR00685 172 VKRLLWHQPGSGISPVYLGDDI-TDEDAFRVVNNQWGNYGFYPVPIGSG 219 (244)
T ss_pred HHHHHHhcccCCCceEEEcCCC-cHHHHHHHHhcccCCCCeEEEEEecC
Confidence 5678888888899999999999 999544322 5678888633
No 171
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=56.15 E-value=29 Score=33.21 Aligned_cols=36 Identities=28% Similarity=0.313 Sum_probs=32.1
Q ss_pred chhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhh
Q 014930 143 NGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFM 178 (415)
Q Consensus 143 ~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l 178 (415)
.|...+.|++|+++|.+++++|.-+...+..++..+
T Consensus 22 ~~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l 57 (270)
T PRK10513 22 SPAVKQAIAAARAKGVNVVLTTGRPYAGVHRYLKEL 57 (270)
T ss_pred CHHHHHHHHHHHHCCCEEEEecCCChHHHHHHHHHh
Confidence 467889999999999999999999999888877765
No 172
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=55.23 E-value=18 Score=35.17 Aligned_cols=35 Identities=20% Similarity=0.086 Sum_probs=31.9
Q ss_pred hhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhh
Q 014930 144 GQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFM 178 (415)
Q Consensus 144 p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l 178 (415)
|...++|++|++.|++++++||.+...+..++..+
T Consensus 24 ~~~~~ai~~l~~~Gi~~~iaTgR~~~~~~~~~~~l 58 (273)
T PRK00192 24 EPAKPALKALKEKGIPVIPCTSKTAAEVEVLRKEL 58 (273)
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHc
Confidence 56889999999999999999999999999988876
No 173
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=55.14 E-value=18 Score=34.61 Aligned_cols=36 Identities=28% Similarity=0.246 Sum_probs=33.3
Q ss_pred chhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhh
Q 014930 143 NGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFM 178 (415)
Q Consensus 143 ~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l 178 (415)
.+...+.|+++++.|++++|+|..+...+..++..+
T Consensus 22 ~~~~~~al~~~~~~g~~v~iaTGR~~~~~~~~~~~l 57 (264)
T COG0561 22 SPETKEALARLREKGVKVVLATGRPLPDVLSILEEL 57 (264)
T ss_pred CHHHHHHHHHHHHCCCEEEEECCCChHHHHHHHHHc
Confidence 467889999999999999999999999999999887
No 174
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=54.84 E-value=25 Score=33.23 Aligned_cols=51 Identities=18% Similarity=0.176 Sum_probs=37.1
Q ss_pred hhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhhhccCCCCCCCccCCccEEEEcCCCCCCCC
Q 014930 144 GQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYT 207 (415)
Q Consensus 144 p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~~~FD~vi~~a~KP~FF~ 207 (415)
+.+..+|+.+|++|++..|+=|-..+.- .+- .|-+..|.|.+-+-.|+|-+
T Consensus 92 ~~~~~~i~~ik~~g~k~GialnP~T~~~-~~~------------~~l~~vD~VlvMsV~PG~~G 142 (201)
T PF00834_consen 92 EDPKETIKYIKEAGIKAGIALNPETPVE-ELE------------PYLDQVDMVLVMSVEPGFGG 142 (201)
T ss_dssp TTHHHHHHHHHHTTSEEEEEE-TTS-GG-GGT------------TTGCCSSEEEEESS-TTTSS
T ss_pred hCHHHHHHHHHHhCCCEEEEEECCCCch-HHH------------HHhhhcCEEEEEEecCCCCc
Confidence 4577899999999999999988765443 222 35567899999999998654
No 175
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=54.61 E-value=16 Score=42.92 Aligned_cols=36 Identities=11% Similarity=0.012 Sum_probs=33.5
Q ss_pred chhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhh
Q 014930 143 NGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFM 178 (415)
Q Consensus 143 ~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l 178 (415)
-|++++.++++|++|+++.++|.-+..-+..+..-+
T Consensus 648 r~~v~~aI~~l~~aGIkv~MiTGD~~~tA~~iA~~~ 683 (1053)
T TIGR01523 648 RNESAGAVEKCHQAGINVHMLTGDFPETAKAIAQEV 683 (1053)
T ss_pred chhHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHc
Confidence 368999999999999999999999999999998876
No 176
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.
Probab=53.80 E-value=21 Score=38.00 Aligned_cols=35 Identities=17% Similarity=0.241 Sum_probs=32.7
Q ss_pred hhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhh
Q 014930 144 GQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFM 178 (415)
Q Consensus 144 p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l 178 (415)
|+..+.++.|+++|.++.++|.-+..-+..+...+
T Consensus 350 ~~~~~~i~~l~~~gi~~~~ltGD~~~~a~~ia~~l 384 (499)
T TIGR01494 350 DDAKETISELREAGIRVIMLTGDNVLTAKAIAKEL 384 (499)
T ss_pred hhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHc
Confidence 68999999999999999999999999999988876
No 177
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=52.22 E-value=22 Score=33.83 Aligned_cols=36 Identities=31% Similarity=0.381 Sum_probs=31.5
Q ss_pred chhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhh
Q 014930 143 NGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFM 178 (415)
Q Consensus 143 ~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l 178 (415)
+++..++|++|+++|.+++++|+.++..+..++..+
T Consensus 18 ~~~~~~~i~~l~~~G~~~~iaTGR~~~~~~~~~~~~ 53 (256)
T TIGR00099 18 SPSTKEALAKLREKGIKVVLATGRPYKEVKNILKEL 53 (256)
T ss_pred CHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHc
Confidence 467889999999999999999999998888777654
No 178
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=50.59 E-value=8.8 Score=35.19 Aligned_cols=34 Identities=26% Similarity=0.287 Sum_probs=27.7
Q ss_pred HHHHHHHhCCCCCcEEEEcccccccccccccCCce
Q 014930 241 LKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWR 275 (415)
Q Consensus 241 ~~~~~~~~g~~g~~vLYvGDhi~~Di~~~k~~Gwr 275 (415)
++.+++.++++..+|++|||.. +|+-..+.+|+.
T Consensus 168 ~~~~~~~~~~~~~~~~~~GD~~-nD~~~~~~~~~~ 201 (204)
T TIGR01484 168 LQALLKELNGKRDEILAFGDSG-NDEEMFEVAGLA 201 (204)
T ss_pred HHHHHHHhCCCHHHEEEEcCCH-HHHHHHHHcCCc
Confidence 5678888999999999999999 998666655543
No 179
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=49.75 E-value=32 Score=39.82 Aligned_cols=103 Identities=18% Similarity=0.152 Sum_probs=68.4
Q ss_pred hhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhhhccCCCCCCCccCCc-cEEEEcCCCCCCCCCCCCceeeccCcccc
Q 014930 144 GQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELF-DVVIAQANKPDFYTSDHPFRCYDTEKDTL 222 (415)
Q Consensus 144 p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~~~F-D~vi~~a~KP~FF~~~~~fr~vd~~~~~~ 222 (415)
|+.++.++.++++|+++.+||.-+..=+..|..-+ |. ..+.. +++|.++. + +. +
T Consensus 550 ~~v~~aI~~l~~AGI~v~MiTGD~~~TA~aIa~~~-------Gi-~~~~~~~~vi~G~e----------l---~~----l 604 (917)
T COG0474 550 EDVKEAIEELREAGIKVWMITGDHVETAIAIAKEC-------GI-EAEAESALVIDGAE----------L---DA----L 604 (917)
T ss_pred ccHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHc-------CC-CCCCCceeEeehHH----------h---hh----c
Confidence 68999999999999999999999999999998887 31 11112 55666651 0 00 0
Q ss_pred cccc-cccccCCeeeccCcHH---HHHHHhCCCCCcEEEEcccccccccccccC
Q 014930 223 AFTK-VDAFIPNKIYYHGCLK---SFLQITKWNGPEVIYFGDHLFSDLRGPSKA 272 (415)
Q Consensus 223 ~~~~-~~~l~~g~vY~~G~~~---~~~~~~g~~g~~vLYvGDhi~~Di~~~k~~ 272 (415)
...+ ...++...||+.=+-. .+.+.+.-+|.-|+|.||-. +|+-+-|.+
T Consensus 605 ~~~el~~~~~~~~VfARvsP~qK~~IV~~lq~~g~vVamtGDGv-NDapALk~A 657 (917)
T COG0474 605 SDEELAELVEELSVFARVSPEQKARIVEALQKSGHVVAMTGDGV-NDAPALKAA 657 (917)
T ss_pred CHHHHHHHhhhCcEEEEcCHHHHHHHHHHHHhCCCEEEEeCCCc-hhHHHHHhc
Confidence 0000 1112334466655522 35566666799999999999 999665554
No 180
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=49.45 E-value=17 Score=30.66 Aligned_cols=31 Identities=16% Similarity=0.407 Sum_probs=26.4
Q ss_pred chhHHHHHHHHHHcCCeEEEEeCCChhhhHH
Q 014930 143 NGQVLQFVKMLREKGKKLFLLTNSPYYFVDG 173 (415)
Q Consensus 143 ~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~ 173 (415)
.+++.++++.+|++|.+++.+|+++..-...
T Consensus 60 t~~~~~~~~~a~~~g~~vi~iT~~~~s~la~ 90 (128)
T cd05014 60 TDELLNLLPHLKRRGAPIIAITGNPNSTLAK 90 (128)
T ss_pred CHHHHHHHHHHHHCCCeEEEEeCCCCCchhh
Confidence 4789999999999999999999987655544
No 181
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=48.59 E-value=11 Score=36.12 Aligned_cols=35 Identities=29% Similarity=0.422 Sum_probs=29.9
Q ss_pred cHHHHHHHhCCCCCcEEEEcccccccccccccCCce
Q 014930 240 CLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWR 275 (415)
Q Consensus 240 ~~~~~~~~~g~~g~~vLYvGDhi~~Di~~~k~~Gwr 275 (415)
.++.+++.+|++.+++++|||.. +|+--.+.+|+.
T Consensus 192 ~i~~~~~~~~~~~~~~~~~GD~~-nD~~m~~~~~~~ 226 (256)
T TIGR00099 192 ALQSLAEALGISLEDVIAFGDGM-NDIEMLEAAGYG 226 (256)
T ss_pred HHHHHHHHcCCCHHHEEEeCCcH-HhHHHHHhCCce
Confidence 36688999999999999999999 999777777764
No 182
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=48.56 E-value=30 Score=31.73 Aligned_cols=36 Identities=25% Similarity=0.378 Sum_probs=32.6
Q ss_pred chhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhh
Q 014930 143 NGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFM 178 (415)
Q Consensus 143 ~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l 178 (415)
+|+..+.|++|+++|.+++++|.-++..+..++.-+
T Consensus 17 ~~~~~~al~~l~~~g~~~~i~TGR~~~~~~~~~~~~ 52 (254)
T PF08282_consen 17 SPETIEALKELQEKGIKLVIATGRSYSSIKRLLKEL 52 (254)
T ss_dssp CHHHHHHHHHHHHTTCEEEEECSSTHHHHHHHHHHT
T ss_pred CHHHHHHHHhhcccceEEEEEccCcccccccccccc
Confidence 478999999999999999999999999998888754
No 183
>KOG4549 consensus Magnesium-dependent phosphatase [General function prediction only]
Probab=48.48 E-value=86 Score=28.01 Aligned_cols=54 Identities=9% Similarity=-0.015 Sum_probs=36.7
Q ss_pred hhcchhhHHHHhcCccccccc---chhHHHHHHHHHHcCCeEEEEeCCChh-hhHHHHH
Q 014930 122 VHRRGLVHRGILSDPNRYLVK---NGQVLQFVKMLREKGKKLFLLTNSPYY-FVDGGMR 176 (415)
Q Consensus 122 ~h~~G~lk~~v~~np~kYi~k---~p~l~~~L~~Lr~~GkklfLlTNS~~~-yt~~vm~ 176 (415)
.|.++.+|+.-.+ +.+|=+. -++++..|..||+.|.+++.++|+... +++.+++
T Consensus 23 thl~~pfkP~k~~-~g~~g~e~~fY~Di~rIL~dLk~~GVtl~~ASRt~ap~iA~q~L~ 80 (144)
T KOG4549|consen 23 THLDYPFKPFKCE-CGSKGEEMIFYDDIRRILVDLKKLGVTLIHASRTMAPQIASQGLE 80 (144)
T ss_pred ecccccccccccC-cccCcceeeeccchhHHHHHHHhcCcEEEEecCCCCHHHHHHHHH
Confidence 3555656654433 4444332 277899999999999999999999754 4555444
No 184
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=47.27 E-value=15 Score=35.94 Aligned_cols=40 Identities=20% Similarity=0.408 Sum_probs=31.1
Q ss_pred cHHHHHHHhCCCCCcEEEEccccccccc--c-cccCCceEEEEe
Q 014930 240 CLKSFLQITKWNGPEVIYFGDHLFSDLR--G-PSKAGWRTAAII 280 (415)
Q Consensus 240 ~~~~~~~~~g~~g~~vLYvGDhi~~Di~--~-~k~~GwrT~lVv 280 (415)
.+..+++.+|++.++++||||.. +|+- . ++..+..+++|-
T Consensus 178 al~~ll~~~~~~~~~v~~~GD~~-nD~~mf~~~~~~~g~~vavg 220 (266)
T PRK10187 178 AIAAFMQEAPFAGRTPVFVGDDL-TDEAGFAVVNRLGGISVKVG 220 (266)
T ss_pred HHHHHHHhcCCCCCeEEEEcCCc-cHHHHHHHHHhcCCeEEEEC
Confidence 36678999999999999999998 9973 3 344566777774
No 185
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=47.03 E-value=61 Score=29.51 Aligned_cols=49 Identities=12% Similarity=0.164 Sum_probs=32.7
Q ss_pred hhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhhhccCCCCCCCccCCccEEEEcCCCC
Q 014930 144 GQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKP 203 (415)
Q Consensus 144 p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~~~FD~vi~~a~KP 203 (415)
+=+..+|+...+.|+++||+-.+ .+.++...+.+- +.|..+.|++..-|
T Consensus 33 dl~~~ll~~~~~~~~~v~llG~~-~~~~~~~~~~l~----------~~yp~l~i~g~~~g 81 (171)
T cd06533 33 DLMPALLELAAQKGLRVFLLGAK-PEVLEKAAERLR----------ARYPGLKIVGYHHG 81 (171)
T ss_pred HHHHHHHHHHHHcCCeEEEECCC-HHHHHHHHHHHH----------HHCCCcEEEEecCC
Confidence 34667788888889999999555 455555555552 24566677776556
No 186
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=46.99 E-value=32 Score=33.19 Aligned_cols=52 Identities=19% Similarity=0.248 Sum_probs=38.0
Q ss_pred chhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhhhccCCCCCCCccCCccEEEEcCCCCCCCC
Q 014930 143 NGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYT 207 (415)
Q Consensus 143 ~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~~~FD~vi~~a~KP~FF~ 207 (415)
++.+...|+.+|+.|+|..|+=|-.-+-- .+ .|++ +..|+|..-+-.|+|=+
T Consensus 95 ~~~~~r~i~~Ik~~G~kaGv~lnP~Tp~~-~i-~~~l-----------~~vD~VllMsVnPGfgG 146 (220)
T COG0036 95 TEHIHRTIQLIKELGVKAGLVLNPATPLE-AL-EPVL-----------DDVDLVLLMSVNPGFGG 146 (220)
T ss_pred CcCHHHHHHHHHHcCCeEEEEECCCCCHH-HH-HHHH-----------hhCCEEEEEeECCCCcc
Confidence 46788999999999999998888654432 21 2221 34689999999998764
No 187
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=46.77 E-value=31 Score=31.93 Aligned_cols=36 Identities=14% Similarity=0.233 Sum_probs=31.5
Q ss_pred chhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhh
Q 014930 143 NGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFM 178 (415)
Q Consensus 143 ~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l 178 (415)
.|+..+.|++|+++|.+++++|+.++..+..+...+
T Consensus 20 ~~~~~~~i~~l~~~g~~~~~~TGR~~~~~~~~~~~l 55 (215)
T TIGR01487 20 SERAIEAIRKAEKKGIPVSLVTGNTVPFARALAVLI 55 (215)
T ss_pred CHHHHHHHHHHHHCCCEEEEEcCCcchhHHHHHHHh
Confidence 467899999999999999999999999888876554
No 188
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=46.45 E-value=32 Score=31.76 Aligned_cols=36 Identities=17% Similarity=0.290 Sum_probs=31.4
Q ss_pred chhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhh
Q 014930 143 NGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFM 178 (415)
Q Consensus 143 ~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l 178 (415)
.|...++|++|+++|.+++++|..+...+..++..+
T Consensus 17 ~~~~~~al~~l~~~Gi~~~~aTGR~~~~~~~~~~~l 52 (225)
T TIGR01482 17 NESALEAIRKAESVGIPVVLVTGNSVQFARALAKLI 52 (225)
T ss_pred CHHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHh
Confidence 356788999999999999999999999988877665
No 189
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=46.35 E-value=20 Score=33.77 Aligned_cols=45 Identities=11% Similarity=0.015 Sum_probs=31.9
Q ss_pred HHHHHHHhCCCCCcEEEEcccccccccccccCCceEEEEeccchhHHH
Q 014930 241 LKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIHELESEIR 288 (415)
Q Consensus 241 ~~~~~~~~g~~g~~vLYvGDhi~~Di~~~k~~GwrT~lVvpEL~~Ei~ 288 (415)
++.+++.+|+++++|++|||.. +|+-..+..| ..++| ..-..|+.
T Consensus 164 l~~l~~~~g~~~~~~i~~GD~~-nD~~ml~~~~-~~iav-~na~~~~k 208 (236)
T TIGR02471 164 LRYLSYRWGLPLEQILVAGDSG-NDEEMLRGLT-LGVVV-GNHDPELE 208 (236)
T ss_pred HHHHHHHhCCCHHHEEEEcCCc-cHHHHHcCCC-cEEEE-cCCcHHHH
Confidence 5678899999999999999999 9996555555 23333 34444443
No 190
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=45.81 E-value=34 Score=31.82 Aligned_cols=36 Identities=11% Similarity=0.254 Sum_probs=32.0
Q ss_pred chhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhh
Q 014930 143 NGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFM 178 (415)
Q Consensus 143 ~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l 178 (415)
.|...+.|.+|+++|.+++++|.-++..+..+...+
T Consensus 22 ~~~~~~al~~l~~~G~~~~iaTGR~~~~~~~~~~~l 57 (230)
T PRK01158 22 SLKAVEAIRKAEKLGIPVILATGNVLCFARAAAKLI 57 (230)
T ss_pred CHHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHh
Confidence 467889999999999999999999999998877665
No 191
>KOG2630 consensus Enolase-phosphatase E-1 [Amino acid transport and metabolism]
Probab=45.69 E-value=33 Score=33.45 Aligned_cols=110 Identities=14% Similarity=0.230 Sum_probs=68.8
Q ss_pred cchhhHHHHhcCcccccccchhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhhhccCCCCCCCccCCccEEEEcCCCC
Q 014930 124 RRGLVHRGILSDPNRYLVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKP 203 (415)
Q Consensus 124 ~~G~lk~~v~~np~kYi~k~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~~~FD~vi~~a~KP 203 (415)
.+|.||..+- +++.+.+++-++.|.++|+-+.-...-...+-.|- ..| +.+.|++
T Consensus 116 ~sg~lk~~v~----------aDv~~a~e~w~~~g~~vyIYSSgsv~AqKllfg~s-----~~g-dl~~y~~--------- 170 (254)
T KOG2630|consen 116 ESGELKAHVY----------ADVLPAIERWSGEGVRVYIYSSGSVAAQKLLFGYS-----DAG-DLRKYIS--------- 170 (254)
T ss_pred cccccccccc----------chhHHHHHHHhhcCceEEEEcCCcHHHHHHHHccc-----Ccc-hHHHHhh---------
Confidence 4566665443 47888999999999999976555444443332222 112 2222222
Q ss_pred CCCCCCCCceeeccCcccccccccccccCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCceEEEEec
Q 014930 204 DFYTSDHPFRCYDTEKDTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIH 281 (415)
Q Consensus 204 ~FF~~~~~fr~vd~~~~~~~~~~~~~l~~g~vY~~G~~~~~~~~~g~~g~~vLYvGDhi~~Di~~~k~~GwrT~lVvp 281 (415)
++| |+.-|. |+ -..+...+.+..|.++.++|+.-|.. ....+|+.+|..|.+++.
T Consensus 171 gyf---------Dt~iG~----K~---------e~~sy~~I~~~Ig~s~~eiLfLTd~~-~Ea~aa~~aGl~a~l~~r 225 (254)
T KOG2630|consen 171 GYF---------DTTIGL----KV---------ESQSYKKIGHLIGKSPREILFLTDVP-REAAAARKAGLQAGLVSR 225 (254)
T ss_pred hhh---------hccccc----ee---------hhHHHHHHHHHhCCChhheEEeccCh-HHHHHHHhcccceeeeec
Confidence 122 221110 00 03456678889999999999999888 777788889999988864
No 192
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=44.33 E-value=25 Score=29.50 Aligned_cols=31 Identities=23% Similarity=0.267 Sum_probs=25.7
Q ss_pred chhHHHHHHHHHHcCCeEEEEeCCChhhhHH
Q 014930 143 NGQVLQFVKMLREKGKKLFLLTNSPYYFVDG 173 (415)
Q Consensus 143 ~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~ 173 (415)
.+++.+.++..|+.|.+++.+||++..-...
T Consensus 59 t~e~~~~~~~a~~~g~~vi~iT~~~~s~la~ 89 (126)
T cd05008 59 TADTLAALRLAKEKGAKTVAITNVVGSTLAR 89 (126)
T ss_pred CHHHHHHHHHHHHcCCeEEEEECCCCChHHH
Confidence 3578999999999999999999997654444
No 193
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=43.88 E-value=38 Score=32.59 Aligned_cols=52 Identities=17% Similarity=0.206 Sum_probs=39.3
Q ss_pred hhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhhhccCCCCCCCccCCccEEEEcCCCCCCCCC
Q 014930 144 GQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTS 208 (415)
Q Consensus 144 p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~~~FD~vi~~a~KP~FF~~ 208 (415)
+.+..+|+.+|+.|+|..|+-|-..+. +.+-.++ ++.|.|.+-+--|+|-+.
T Consensus 97 ~~~~~~l~~Ir~~g~k~GlalnP~T~~-~~i~~~l------------~~vD~VlvMtV~PGf~GQ 148 (223)
T PRK08745 97 RHVHRTIQLIKSHGCQAGLVLNPATPV-DILDWVL------------PELDLVLVMSVNPGFGGQ 148 (223)
T ss_pred ccHHHHHHHHHHCCCceeEEeCCCCCH-HHHHHHH------------hhcCEEEEEEECCCCCCc
Confidence 457789999999999999998876543 3333333 357889999999988753
No 194
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=43.81 E-value=45 Score=39.01 Aligned_cols=35 Identities=17% Similarity=0.100 Sum_probs=32.6
Q ss_pred hhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhh
Q 014930 144 GQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFM 178 (415)
Q Consensus 144 p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l 178 (415)
|++++.+++++++|+++.++|.-+..-+..+..-+
T Consensus 571 ~~v~~aI~~l~~~Gi~v~~~TGd~~~ta~~ia~~~ 605 (997)
T TIGR01106 571 AAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGV 605 (997)
T ss_pred HHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHc
Confidence 69999999999999999999999999998888766
No 195
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=43.44 E-value=16 Score=32.89 Aligned_cols=38 Identities=21% Similarity=0.492 Sum_probs=29.7
Q ss_pred HHhcCcccccccc--hhHHHHHHHHHHcCCeEEEEeCCCh
Q 014930 131 GILSDPNRYLVKN--GQVLQFVKMLREKGKKLFLLTNSPY 168 (415)
Q Consensus 131 ~v~~np~kYi~k~--p~l~~~L~~Lr~~GkklfLlTNS~~ 168 (415)
-+.++||-++|+. ..+..+|..+.+.+.++|+.|-|+.
T Consensus 261 lliDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~ 300 (303)
T PF13304_consen 261 LLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPF 300 (303)
T ss_dssp EEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GG
T ss_pred EEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccch
Confidence 4578999999996 5677777776666789999999974
No 196
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=43.23 E-value=40 Score=32.27 Aligned_cols=51 Identities=16% Similarity=0.219 Sum_probs=38.0
Q ss_pred hhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhhhccCCCCCCCccCCccEEEEcCCCCCCCC
Q 014930 144 GQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYT 207 (415)
Q Consensus 144 p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~~~FD~vi~~a~KP~FF~ 207 (415)
+.+..+|+.+|+.|+|..|+-|-..+... +-.++ +.-|.|.+-+--|+|-+
T Consensus 93 ~~~~~~l~~ik~~g~k~GlalnP~Tp~~~-i~~~l------------~~~D~vlvMtV~PGfgG 143 (220)
T PRK08883 93 EHVDRTLQLIKEHGCQAGVVLNPATPLHH-LEYIM------------DKVDLILLMSVNPGFGG 143 (220)
T ss_pred ccHHHHHHHHHHcCCcEEEEeCCCCCHHH-HHHHH------------HhCCeEEEEEecCCCCC
Confidence 45788999999999999999987654433 22222 45688999999997754
No 197
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=42.99 E-value=1.1e+02 Score=24.31 Aligned_cols=98 Identities=14% Similarity=0.062 Sum_probs=61.1
Q ss_pred ccchhHHHHHHH-HHHcCCeEEEEeCCChhhhHHHHHhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCCceeeccCc
Q 014930 141 VKNGQVLQFVKM-LREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDTEK 219 (415)
Q Consensus 141 ~k~p~l~~~L~~-Lr~~GkklfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~~~FD~vi~~a~KP~FF~~~~~fr~vd~~~ 219 (415)
..+|.....+++ |+..|.+....+++..+..+.+-+. -||+|+.+..=|
T Consensus 5 d~~~~~~~~l~~~l~~~~~~~v~~~~~~~~~~~~~~~~--------------~~d~iiid~~~~---------------- 54 (112)
T PF00072_consen 5 DDDPEIRELLEKLLERAGYEEVTTASSGEEALELLKKH--------------PPDLIIIDLELP---------------- 54 (112)
T ss_dssp ESSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHS--------------TESEEEEESSSS----------------
T ss_pred ECCHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHhccc--------------CceEEEEEeeec----------------
Confidence 445666666644 5678884555666666655554322 189999998666
Q ss_pred ccccccccccccCCeeeccCcHHHH---HHHhCCCCCcEEEEcccccccc-cccccCCceEEEEeccchhHH
Q 014930 220 DTLAFTKVDAFIPNKIYYHGCLKSF---LQITKWNGPEVIYFGDHLFSDL-RGPSKAGWRTAAIIHELESEI 287 (415)
Q Consensus 220 ~~~~~~~~~~l~~g~vY~~G~~~~~---~~~~g~~g~~vLYvGDhi~~Di-~~~k~~GwrT~lVvpEL~~Ei 287 (415)
+++...+ ++..+ ....+++++++--.+. ..+.+.|...++..|.-.+|+
T Consensus 55 ------------------~~~~~~~~~~i~~~~-~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kp~~~~~l 107 (112)
T PF00072_consen 55 ------------------DGDGLELLEQIRQIN-PSIPIIVVTDEDDSDEVQEALRAGADDYLSKPFSPEEL 107 (112)
T ss_dssp ------------------SSBHHHHHHHHHHHT-TTSEEEEEESSTSHHHHHHHHHTTESEEEESSSSHHHH
T ss_pred ------------------ccccccccccccccc-ccccEEEecCCCCHHHHHHHHHCCCCEEEECCCCHHHH
Confidence 1222222 23333 4567888887775444 455679999999999766654
No 198
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=41.56 E-value=41 Score=32.60 Aligned_cols=48 Identities=15% Similarity=0.080 Sum_probs=37.9
Q ss_pred cchhhHHHHhcCcccccccchhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhh
Q 014930 124 RRGLVHRGILSDPNRYLVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFM 178 (415)
Q Consensus 124 ~~G~lk~~v~~np~kYi~k~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l 178 (415)
.||+|- |+.+++ .+...+.|++|+++|.+++++|.-+...+..++..+
T Consensus 14 lDGTLL-----~~~~~i--~~~~~~ai~~l~~~Gi~~viaTGR~~~~i~~~~~~l 61 (271)
T PRK03669 14 LDGTLL-----DSHTYD--WQPAAPWLTRLREAQVPVILCSSKTAAEMLPLQQTL 61 (271)
T ss_pred CccCCc-----CCCCcC--cHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHh
Confidence 356663 344432 356788899999999999999999999999888876
No 199
>KOG1618 consensus Predicted phosphatase [General function prediction only]
Probab=41.29 E-value=22 Score=36.34 Aligned_cols=31 Identities=26% Similarity=0.498 Sum_probs=26.2
Q ss_pred CCcEEEEcccccccccccc---------------cCCceEEEEecc
Q 014930 252 GPEVIYFGDHLFSDLRGPS---------------KAGWRTAAIIHE 282 (415)
Q Consensus 252 g~~vLYvGDhi~~Di~~~k---------------~~GwrT~lVvpE 282 (415)
.+.+-+|||+-.+||+.|+ ..||-++||.--
T Consensus 297 ~k~lymvGDNP~sDv~GA~lf~~yap~~~~g~~~~~~w~SILV~TG 342 (389)
T KOG1618|consen 297 IKKLYMVGDNPMSDVRGANLFHQYAPELGAGGSANYGWISILVRTG 342 (389)
T ss_pred cceeeeecCCCcccccccccccccccccccccccCCCceEEEEeee
Confidence 3578899999999999886 579999999643
No 200
>PRK10976 putative hydrolase; Provisional
Probab=40.52 E-value=16 Score=34.93 Aligned_cols=33 Identities=27% Similarity=0.322 Sum_probs=27.9
Q ss_pred HHHHHHHhCCCCCcEEEEcccccccccccccCCc
Q 014930 241 LKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGW 274 (415)
Q Consensus 241 ~~~~~~~~g~~g~~vLYvGDhi~~Di~~~k~~Gw 274 (415)
++.+++.+|++.++|+.|||.. +|+---+.+|+
T Consensus 195 l~~l~~~lgi~~~~viafGD~~-NDi~Ml~~ag~ 227 (266)
T PRK10976 195 LEAVAKKLGYSLKDCIAFGDGM-NDAEMLSMAGK 227 (266)
T ss_pred HHHHHHHcCCCHHHeEEEcCCc-ccHHHHHHcCC
Confidence 6688999999999999999999 99954455565
No 201
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=40.45 E-value=1e+02 Score=27.99 Aligned_cols=53 Identities=15% Similarity=0.243 Sum_probs=37.0
Q ss_pred cccchhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhhhccCCCCCCCccCCccEEEEcCCCC
Q 014930 140 LVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKP 203 (415)
Q Consensus 140 i~k~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~~~FD~vi~~a~KP 203 (415)
+...+=+..+++...+.|+++||+-.++ +.++.....|- +.|.++.|++..-|
T Consensus 31 v~g~dl~~~l~~~~~~~~~~ifllG~~~-~~~~~~~~~l~----------~~yP~l~ivg~~~g 83 (172)
T PF03808_consen 31 VTGSDLFPDLLRRAEQRGKRIFLLGGSE-EVLEKAAANLR----------RRYPGLRIVGYHHG 83 (172)
T ss_pred cCHHHHHHHHHHHHHHcCCeEEEEeCCH-HHHHHHHHHHH----------HHCCCeEEEEecCC
Confidence 3334457777888888899999998886 55666666662 24557778877666
No 202
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=38.11 E-value=24 Score=33.78 Aligned_cols=36 Identities=17% Similarity=0.109 Sum_probs=29.5
Q ss_pred HHHHHHHhCCC--CCcEEEEcccccccccccccCCceEE
Q 014930 241 LKSFLQITKWN--GPEVIYFGDHLFSDLRGPSKAGWRTA 277 (415)
Q Consensus 241 ~~~~~~~~g~~--g~~vLYvGDhi~~Di~~~k~~GwrT~ 277 (415)
++.+++.+|++ .+++++|||.. +|+---+.+|+-.+
T Consensus 181 i~~l~~~~~i~~~~~~~~a~GD~~-ND~~Ml~~ag~~va 218 (256)
T TIGR01486 181 ANALKQFYNQPGGAIKVVGLGDSP-NDLPLLEVVDLAVV 218 (256)
T ss_pred HHHHHHHHhhcCCCceEEEEcCCH-hhHHHHHHCCEEEE
Confidence 56888999998 99999999999 99966666665544
No 203
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=37.87 E-value=46 Score=31.70 Aligned_cols=51 Identities=24% Similarity=0.250 Sum_probs=38.0
Q ss_pred hhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhhhccCCCCCCCccCCccEEEEcCCCCCCCC
Q 014930 144 GQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYT 207 (415)
Q Consensus 144 p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~~~FD~vi~~a~KP~FF~ 207 (415)
.+...+.+++|++|.|+-++-|-...- +.+. .|.+.-|.|.+-.-+|+|=+
T Consensus 99 q~~~~lv~~ir~~Gmk~G~alkPgT~V-e~~~------------~~~~~~D~vLvMtVePGFGG 149 (224)
T KOG3111|consen 99 QKPAELVEKIREKGMKVGLALKPGTPV-EDLE------------PLAEHVDMVLVMTVEPGFGG 149 (224)
T ss_pred cCHHHHHHHHHHcCCeeeEEeCCCCcH-HHHH------------HhhccccEEEEEEecCCCch
Confidence 457888999999999999887755443 3222 45567799999999998743
No 204
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=37.28 E-value=20 Score=34.40 Aligned_cols=37 Identities=27% Similarity=0.273 Sum_probs=29.6
Q ss_pred HHHHHHHhCCCCCcEEEEcccccccccccccCCceEEEE
Q 014930 241 LKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAI 279 (415)
Q Consensus 241 ~~~~~~~~g~~g~~vLYvGDhi~~Di~~~k~~GwrT~lV 279 (415)
++.+++.+|++.++|+.|||.. +|+---+.+|+ .+++
T Consensus 201 l~~l~~~~gi~~~~v~afGD~~-NDi~Ml~~ag~-~vAm 237 (270)
T PRK10513 201 VKSLAEHLGIKPEEVMAIGDQE-NDIAMIEYAGV-GVAM 237 (270)
T ss_pred HHHHHHHhCCCHHHEEEECCch-hhHHHHHhCCc-eEEe
Confidence 6688999999999999999999 99955455665 3443
No 205
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=36.96 E-value=54 Score=31.12 Aligned_cols=35 Identities=9% Similarity=0.068 Sum_probs=30.1
Q ss_pred hhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhh
Q 014930 144 GQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFM 178 (415)
Q Consensus 144 p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l 178 (415)
|+..++|++|+++|++++++|+.+..-+..++.-+
T Consensus 18 ~~~~~ai~~l~~~G~~~vi~TgR~~~~~~~~~~~l 52 (225)
T TIGR02461 18 GPAREALEELKDLGFPIVFVSSKTRAEQEYYREEL 52 (225)
T ss_pred hHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHc
Confidence 46899999999999999999999988777766555
No 206
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=36.77 E-value=73 Score=30.42 Aligned_cols=34 Identities=15% Similarity=0.039 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhh
Q 014930 145 QVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFM 178 (415)
Q Consensus 145 ~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l 178 (415)
...++|++|+++|.+++++|+.+...+..++..+
T Consensus 20 ~~~~~i~~l~~~g~~~~~~TgR~~~~~~~~~~~~ 53 (256)
T TIGR01486 20 PAKEVLERLQELGIPVIPCTSKTAAEVEYLRKEL 53 (256)
T ss_pred HHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHc
Confidence 4789999999999999999999999888877765
No 207
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=36.69 E-value=60 Score=31.45 Aligned_cols=52 Identities=10% Similarity=0.011 Sum_probs=38.5
Q ss_pred hhHHHHHHHHHHcCC--eEEEEeCCChhhhHHHHHhhhccCCCCCCCccCCccEEEEcCCCCCCCCC
Q 014930 144 GQVLQFVKMLREKGK--KLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTS 208 (415)
Q Consensus 144 p~l~~~L~~Lr~~Gk--klfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~~~FD~vi~~a~KP~FF~~ 208 (415)
+.+..+|+++|+.|+ |..|+=|-..+. +.+-.++ +..|.|.+-+--|+|-+.
T Consensus 103 ~~~~~~l~~Ik~~g~~~kaGlalnP~Tp~-~~i~~~l------------~~vD~VLiMtV~PGfgGQ 156 (228)
T PRK08091 103 HDLALTIEWLAKQKTTVLIGLCLCPETPI-SLLEPYL------------DQIDLIQILTLDPRTGTK 156 (228)
T ss_pred ccHHHHHHHHHHCCCCceEEEEECCCCCH-HHHHHHH------------hhcCEEEEEEECCCCCCc
Confidence 457889999999999 988888866443 3444443 346889999999988753
No 208
>PRK10976 putative hydrolase; Provisional
Probab=35.89 E-value=55 Score=31.27 Aligned_cols=36 Identities=14% Similarity=0.066 Sum_probs=31.7
Q ss_pred chhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhh
Q 014930 143 NGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFM 178 (415)
Q Consensus 143 ~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l 178 (415)
.|...+.|++++++|.+++++|.-++..+..++..+
T Consensus 21 s~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l 56 (266)
T PRK10976 21 SPYAKETLKLLTARGIHFVFATGRHHVDVGQIRDNL 56 (266)
T ss_pred CHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHhc
Confidence 467889999999999999999999999888777655
No 209
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=35.24 E-value=29 Score=31.83 Aligned_cols=26 Identities=27% Similarity=0.480 Sum_probs=23.7
Q ss_pred HHHHHHHhCCCCCcEEEEccccccccc
Q 014930 241 LKSFLQITKWNGPEVIYFGDHLFSDLR 267 (415)
Q Consensus 241 ~~~~~~~~g~~g~~vLYvGDhi~~Di~ 267 (415)
++.+++.+|++.++++.|||.. +|+-
T Consensus 191 i~~l~~~~~i~~~~~~~~GD~~-ND~~ 216 (254)
T PF08282_consen 191 IKYLLEYLGISPEDIIAFGDSE-NDIE 216 (254)
T ss_dssp HHHHHHHHTTSGGGEEEEESSG-GGHH
T ss_pred HHHHhhhcccccceeEEeeccc-ccHh
Confidence 5678899999999999999999 9984
No 210
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=35.16 E-value=58 Score=31.34 Aligned_cols=36 Identities=17% Similarity=0.132 Sum_probs=32.1
Q ss_pred chhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhh
Q 014930 143 NGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFM 178 (415)
Q Consensus 143 ~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l 178 (415)
++...+.|++|+++|.+++++|.-+...+..++..+
T Consensus 21 ~~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l 56 (272)
T PRK15126 21 GEKTLSTLARLRERDITLTFATGRHVLEMQHILGAL 56 (272)
T ss_pred CHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHc
Confidence 567889999999999999999999999988877765
No 211
>KOG2116 consensus Protein involved in plasmid maintenance/nuclear protein involved in lipid metabolism [Cell motility; Lipid transport and metabolism]
Probab=34.86 E-value=3e+02 Score=30.97 Aligned_cols=124 Identities=15% Similarity=0.192 Sum_probs=70.0
Q ss_pred hHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhhh---c--cCCCCCCCccCCccEEEEcC-CCCCCCCCCCCceeeccC
Q 014930 145 QVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFML---E--DSTGYTDSWRELFDVVIAQA-NKPDFYTSDHPFRCYDTE 218 (415)
Q Consensus 145 ~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l~---~--~~~~~g~~W~~~FD~vi~~a-~KP~FF~~~~~fr~vd~~ 218 (415)
++..+..+++++|.|+.-+|--..--++..=.||- + ..+|.|+ ||+.-. -=|.|+. +|=
T Consensus 562 GVAkLyt~Ik~NGYk~lyLSARaIgQA~~TR~yL~nv~QdG~~LPdGP-------ViLSPd~lf~Al~R------EVI-- 626 (738)
T KOG2116|consen 562 GVAKLYTKIKENGYKILYLSARAIGQADSTRQYLKNVEQDGKKLPDGP-------VILSPDSLFAALHR------EVI-- 626 (738)
T ss_pred hHHHHHHHHHhCCeeEEEEehhhhhhhHHHHHHHHHHhhcCccCCCCC-------EEeCCCcchHHHHH------HHH--
Confidence 68888899999999999998766544444444542 1 2233343 122211 0011110 000
Q ss_pred cccccccccccccCCeeeccCcHHHHHHHhCC-CCCcEEEEcccccccccccccCC---ceEEEEec--cchhHHHHhhc
Q 014930 219 KDTLAFTKVDAFIPNKIYYHGCLKSFLQITKW-NGPEVIYFGDHLFSDLRGPSKAG---WRTAAIIH--ELESEIRIQND 292 (415)
Q Consensus 219 ~~~~~~~~~~~l~~g~vY~~G~~~~~~~~~g~-~g~~vLYvGDhi~~Di~~~k~~G---wrT~lVvp--EL~~Ei~~~~~ 292 (415)
..+...|.=-++..+.+++.- ..+=..=||-.| +|+++=++.| -|-+-|-| |+..|..+-..
T Consensus 627 -----------~RkPe~FKIAcL~DIk~LF~p~~nPFYAgFGNR~-TDviSY~~VgVP~~RIFtINpkGEv~~e~~~~~~ 694 (738)
T KOG2116|consen 627 -----------ERKPEVFKIACLTDIKNLFPPSGNPFYAGFGNRI-TDVISYRQVGVPLSRIFTINPKGEVIQELLKTLK 694 (738)
T ss_pred -----------HcCchhhhHHHHHHHHHhcCCCCCceeeecCCCc-ccceeeeeecCCccceEEECCCceehHHHHhhhh
Confidence 001122233556777777762 223466689999 9998776655 47777777 78788666555
Q ss_pred hhh
Q 014930 293 ETY 295 (415)
Q Consensus 293 ~~~ 295 (415)
.+|
T Consensus 695 ~SY 697 (738)
T KOG2116|consen 695 SSY 697 (738)
T ss_pred hhh
Confidence 444
No 212
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=34.65 E-value=60 Score=30.90 Aligned_cols=36 Identities=17% Similarity=0.145 Sum_probs=31.1
Q ss_pred chhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhh
Q 014930 143 NGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFM 178 (415)
Q Consensus 143 ~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l 178 (415)
.|...+.|++++++|.+++|+|.-+...+..++..+
T Consensus 22 ~~~~~~ai~~~~~~G~~~~iaTGR~~~~~~~~~~~l 57 (272)
T PRK10530 22 LPESLEALARAREAGYKVIIVTGRHHVAIHPFYQAL 57 (272)
T ss_pred CHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHhc
Confidence 456789999999999999999999998887766655
No 213
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=34.32 E-value=64 Score=32.61 Aligned_cols=41 Identities=15% Similarity=0.035 Sum_probs=33.9
Q ss_pred cccccccchhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhh
Q 014930 136 PNRYLVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFM 178 (415)
Q Consensus 136 p~kYi~k~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l 178 (415)
.+.|+. +...++|++|+++|+.++++|.....-+..++.-+
T Consensus 15 ~~~~~~--~~a~~aL~~Lk~~GI~vVlaTGRt~~ev~~l~~~L 55 (302)
T PRK12702 15 LEFNSY--GAARQALAALERRSIPLVLYSLRTRAQLEHLCRQL 55 (302)
T ss_pred CCCcCC--HHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHh
Confidence 345543 45789999999999999999999999888887766
No 214
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=34.26 E-value=47 Score=27.74 Aligned_cols=31 Identities=13% Similarity=0.382 Sum_probs=25.9
Q ss_pred chhHHHHHHHHHHcCCeEEEEeCCChhhhHH
Q 014930 143 NGQVLQFVKMLREKGKKLFLLTNSPYYFVDG 173 (415)
Q Consensus 143 ~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~ 173 (415)
..++.+.++.+|+.|.+++++|+++..-...
T Consensus 66 ~~~~~~~~~~ak~~g~~vi~iT~~~~~~l~~ 96 (131)
T PF01380_consen 66 TRELIELLRFAKERGAPVILITSNSESPLAR 96 (131)
T ss_dssp THHHHHHHHHHHHTTSEEEEEESSTTSHHHH
T ss_pred chhhhhhhHHHHhcCCeEEEEeCCCCCchhh
Confidence 3578899999999999999999887665554
No 215
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=34.15 E-value=2.1e+02 Score=29.36 Aligned_cols=99 Identities=19% Similarity=0.166 Sum_probs=60.9
Q ss_pred hhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhhhccCCCCCCCccCCccEEEEcCCCCCCCCCCCCceeeccCccccc
Q 014930 144 GQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTSDHPFRCYDTEKDTLA 223 (415)
Q Consensus 144 p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~~~FD~vi~~a~KP~FF~~~~~fr~vd~~~~~~~ 223 (415)
|=+.-.|+.|+++|++=|+++ .-...+.+.+|+. ..|..-+++..+...+|. |
T Consensus 33 Pii~~~l~~L~~~Gv~eivi~--~~y~~~~i~~~~~-------d~~~~~~~I~y~~e~~~l---------------G--- 85 (358)
T COG1208 33 PLIEYVLEALAAAGVEEIVLV--VGYLGEQIEEYFG-------DGEGLGVRITYVVEKEPL---------------G--- 85 (358)
T ss_pred cHHHHHHHHHHHCCCcEEEEE--eccchHHHHHHHh-------cccccCCceEEEecCCcC---------------c---
Confidence 777788999999999888777 4445566677763 333333555555555551 1
Q ss_pred ccccccccCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccc-----ccc-c-cCCceEEEEeccch
Q 014930 224 FTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDL-----RGP-S-KAGWRTAAIIHELE 284 (415)
Q Consensus 224 ~~~~~~l~~g~vY~~G~~~~~~~~~g~~g~~vLYvGDhi~~Di-----~~~-k-~~GwrT~lVvpEL~ 284 (415)
++|.+..+.+.++- ..=++.-||.+ .|+ +.. + +..+.|++.....+
T Consensus 86 -------------Tag~l~~a~~~l~~-~~f~v~~GDv~-~~~dl~~l~~~~~~~~~~~~~~~~~~~~ 138 (358)
T COG1208 86 -------------TAGALKNALDLLGG-DDFLVLNGDVL-TDLDLSELLEFHKKKGALATIALTRVLD 138 (358)
T ss_pred -------------cHHHHHHHHHhcCC-CcEEEEECCee-eccCHHHHHHHHHhccCccEEEEEecCC
Confidence 25666677776644 45677778888 553 221 1 24677776665443
No 216
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=33.68 E-value=56 Score=23.12 Aligned_cols=39 Identities=10% Similarity=0.238 Sum_probs=32.0
Q ss_pred HhcCcccccccchhHHHHHHHHHHcCCeEEEEeCCChhh
Q 014930 132 ILSDPNRYLVKNGQVLQFVKMLREKGKKLFLLTNSPYYF 170 (415)
Q Consensus 132 v~~np~kYi~k~p~l~~~L~~Lr~~GkklfLlTNS~~~y 170 (415)
++..+--.+.++..+.+.++.|++.|...+.++|+...+
T Consensus 4 ~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~ 42 (57)
T PF00571_consen 4 IMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKL 42 (57)
T ss_dssp HSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBE
T ss_pred CCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEE
Confidence 445566677888899999999999999999999887544
No 217
>PLN02349 glycerol-3-phosphate acyltransferase
Probab=33.23 E-value=3e+02 Score=29.13 Aligned_cols=52 Identities=19% Similarity=0.231 Sum_probs=36.8
Q ss_pred hhHHHHhcCcccccccchhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhhh
Q 014930 127 LVHRGILSDPNRYLVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFML 179 (415)
Q Consensus 127 ~lk~~v~~np~kYi~k~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l~ 179 (415)
.+.+-+++-..-||.--+.+.++-++|+ +|-.|+|++|=..+=--.++.+|+
T Consensus 171 ~yirpLiDf~~S~v~~~~~~~~i~e~l~-~g~nVvllsNHQseaDp~ii~lll 222 (426)
T PLN02349 171 NYIRPLIDFRNSYLGNRSRFDKVEEQLQ-QGHNVVLLSNHQSEADPAVIALLL 222 (426)
T ss_pred HHHHHHhhcccceecCHHHHHHHHHHHh-cCCCEEEEeccccccchHHHHHHH
Confidence 3555566655566665556666666664 568899999988887777888876
No 218
>PRK08005 epimerase; Validated
Probab=33.07 E-value=74 Score=30.37 Aligned_cols=52 Identities=15% Similarity=0.057 Sum_probs=37.6
Q ss_pred hhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhhhccCCCCCCCccCCccEEEEcCCCCCCCCC
Q 014930 144 GQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYTS 208 (415)
Q Consensus 144 p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~~~FD~vi~~a~KP~FF~~ 208 (415)
+.+..+|+.+|+.|+|..|+=|-..+. +.+-.++ ++-|.|.+-+--|+|-+.
T Consensus 93 ~~~~~~l~~Ik~~G~k~GlAlnP~Tp~-~~i~~~l------------~~vD~VlvMsV~PGf~GQ 144 (210)
T PRK08005 93 QNPSEILADIRAIGAKAGLALNPATPL-LPYRYLA------------LQLDALMIMTSEPDGRGQ 144 (210)
T ss_pred cCHHHHHHHHHHcCCcEEEEECCCCCH-HHHHHHH------------HhcCEEEEEEecCCCccc
Confidence 357789999999999999988876432 2222222 356889999999988753
No 219
>PLN03008 Phospholipase D delta
Probab=32.90 E-value=42 Score=38.48 Aligned_cols=64 Identities=17% Similarity=0.210 Sum_probs=43.0
Q ss_pred CCCCChHHHHHHHHHHHHHhhcchhhHHHHhcCcccccccch--------hHHHHHHHHHHcCCeEEEEeCCC
Q 014930 103 KLEFDASYIYEDVNRAIQHVHRRGLVHRGILSDPNRYLVKNG--------QVLQFVKMLREKGKKLFLLTNSP 167 (415)
Q Consensus 103 ~~~~~~~~l~~DV~~av~~~h~~G~lk~~v~~np~kYi~k~p--------~l~~~L~~Lr~~GkklfLlTNS~ 167 (415)
+..|.+...|+||..||...+..=.+-.+-+. |+-|+.++| .|-++|++-.+.|.++++|--.+
T Consensus 232 g~~y~~~rcwedi~~AI~~Ak~~IyI~gWsl~-~ei~L~R~~~~~~~~~~~Lg~LLk~KA~eGVrV~ilvwdd 303 (868)
T PLN03008 232 GKVYEHGKCWEDICYAISEAHHMIYIVGWSIF-HKIKLVRETKVPRDKDMTLGELLKYKSQEGVRVLLLVWDD 303 (868)
T ss_pred CccccccccHHHHHHHHHhhhheEEEeceeec-ceeEEecCCCCCCCCCccHHHHHHHHHHCCCEEEEEEecc
Confidence 34566778999999999876532112222222 555555543 57889999888999999986554
No 220
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=32.74 E-value=24 Score=34.01 Aligned_cols=37 Identities=19% Similarity=0.199 Sum_probs=29.1
Q ss_pred HHHHHHHhCCCCCcEEEEcccccccccccccCCceEEEE
Q 014930 241 LKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAI 279 (415)
Q Consensus 241 ~~~~~~~~g~~g~~vLYvGDhi~~Di~~~k~~GwrT~lV 279 (415)
++.+++.+|++.++|+.|||.. +|+-=-+.+|+ .+++
T Consensus 193 l~~l~~~~gi~~~~v~afGD~~-NDi~Ml~~ag~-~vAm 229 (272)
T PRK15126 193 LAVLSQHLGLSLADCMAFGDAM-NDREMLGSVGR-GFIM 229 (272)
T ss_pred HHHHHHHhCCCHHHeEEecCCH-HHHHHHHHcCC-ceec
Confidence 6789999999999999999999 99954444453 3443
No 221
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=32.64 E-value=59 Score=29.12 Aligned_cols=25 Identities=32% Similarity=0.438 Sum_probs=21.9
Q ss_pred hhHHHHHHHHHHcCCeEEEEeCCCh
Q 014930 144 GQVLQFVKMLREKGKKLFLLTNSPY 168 (415)
Q Consensus 144 p~l~~~L~~Lr~~GkklfLlTNS~~ 168 (415)
+.+.++++.+|+.|.++.|-||...
T Consensus 75 ~~l~~ll~~lk~~Gl~i~l~Tg~~~ 99 (147)
T TIGR02826 75 EALLSLLKIFKEKGLKTCLYTGLEP 99 (147)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCC
Confidence 4799999999999999999999544
No 222
>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=32.38 E-value=1.7e+02 Score=29.32 Aligned_cols=25 Identities=16% Similarity=0.143 Sum_probs=17.8
Q ss_pred hhHHHHHHHHHHcCCeEEEEeCCCh
Q 014930 144 GQVLQFVKMLREKGKKLFLLTNSPY 168 (415)
Q Consensus 144 p~l~~~L~~Lr~~GkklfLlTNS~~ 168 (415)
|-+---|+.|..+|++=++|--++.
T Consensus 32 Pmi~y~l~~L~~aGI~dI~II~~~~ 56 (286)
T COG1209 32 PMIYYPLETLMLAGIRDILIVVGPE 56 (286)
T ss_pred chhHhHHHHHHHcCCceEEEEecCC
Confidence 6677779999999987555544443
No 223
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=31.65 E-value=49 Score=29.87 Aligned_cols=31 Identities=16% Similarity=0.232 Sum_probs=26.2
Q ss_pred chhHHHHHHHHHHcCCeEEEEeCCChhhhHH
Q 014930 143 NGQVLQFVKMLREKGKKLFLLTNSPYYFVDG 173 (415)
Q Consensus 143 ~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~ 173 (415)
.+.+...++..|+.|.+++++|+++..-...
T Consensus 85 t~~~i~~~~~ak~~g~~ii~IT~~~~s~la~ 115 (179)
T TIGR03127 85 TESLVTVAKKAKEIGATVAAITTNPESTLGK 115 (179)
T ss_pred cHHHHHHHHHHHHCCCeEEEEECCCCCchHH
Confidence 4678899999999999999999987765554
No 224
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=31.29 E-value=54 Score=27.79 Aligned_cols=33 Identities=18% Similarity=0.141 Sum_probs=26.9
Q ss_pred chhHHHHHHHHHHcCCeEEEEeCCChhhhHHHH
Q 014930 143 NGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGM 175 (415)
Q Consensus 143 ~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm 175 (415)
.+++.+.++..|+.|.+++.+||++..-.....
T Consensus 60 t~~~~~~~~~a~~~g~~vi~iT~~~~s~la~~a 92 (120)
T cd05710 60 TKETVAAAKFAKEKGATVIGLTDDEDSPLAKLA 92 (120)
T ss_pred ChHHHHHHHHHHHcCCeEEEEECCCCCcHHHhC
Confidence 468889999999999999999998876554433
No 225
>COG2503 Predicted secreted acid phosphatase [General function prediction only]
Probab=30.85 E-value=2e+02 Score=28.54 Aligned_cols=38 Identities=18% Similarity=0.336 Sum_probs=32.2
Q ss_pred cchhHHHHHHHHHHcCCeEEEEeCCChhh-hHHHHHhhh
Q 014930 142 KNGQVLQFVKMLREKGKKLFLLTNSPYYF-VDGGMRFML 179 (415)
Q Consensus 142 k~p~l~~~L~~Lr~~GkklfLlTNS~~~y-t~~vm~~l~ 179 (415)
+-|+..++|+---++|-++|-|||-..+- .+..++-|-
T Consensus 123 ~vpGA~eFl~Yvn~~Gg~ifyiSNR~~~~~~~~T~~nLk 161 (274)
T COG2503 123 AVPGAVEFLNYVNSNGGKIFYISNRDQENEKDGTIENLK 161 (274)
T ss_pred cCccHHHHHHHHHhcCcEEEEEeccchhcccchhHHHHH
Confidence 45899999999999999999999988877 666666664
No 226
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=30.49 E-value=76 Score=28.23 Aligned_cols=30 Identities=20% Similarity=0.216 Sum_probs=25.0
Q ss_pred chhHHHHHHHHHHcCCeEEEEeCCChhhhH
Q 014930 143 NGQVLQFVKMLREKGKKLFLLTNSPYYFVD 172 (415)
Q Consensus 143 ~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~ 172 (415)
.+.+.+.++..|+.|.+++.+|+++.....
T Consensus 92 t~~~~~~~~~a~~~g~~ii~iT~~~~s~l~ 121 (154)
T TIGR00441 92 SKNVLKAIEAAKDKGMKTITLAGKDGGKMA 121 (154)
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCCCCCchh
Confidence 468899999999999999999997654443
No 227
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=29.97 E-value=99 Score=29.41 Aligned_cols=36 Identities=8% Similarity=-0.137 Sum_probs=31.7
Q ss_pred chhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhh
Q 014930 143 NGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFM 178 (415)
Q Consensus 143 ~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l 178 (415)
.|.+.+++++++++|++++++|..+..-+..+...+
T Consensus 23 ~~~~~~~i~~~~~~gi~fv~aTGR~~~~~~~~~~~~ 58 (249)
T TIGR01485 23 LLRLNALLEDHRGEDSLLVYSTGRSPHSYKELQKQK 58 (249)
T ss_pred HHHHHHHHHHhhccCceEEEEcCCCHHHHHHHHhcC
Confidence 378999999999999999999999999888877654
No 228
>PRK13937 phosphoheptose isomerase; Provisional
Probab=29.84 E-value=53 Score=30.32 Aligned_cols=31 Identities=26% Similarity=0.122 Sum_probs=25.8
Q ss_pred chhHHHHHHHHHHcCCeEEEEeCCChhhhHH
Q 014930 143 NGQVLQFVKMLREKGKKLFLLTNSPYYFVDG 173 (415)
Q Consensus 143 ~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~ 173 (415)
.+.+...++..|+.|.+++.+|+++..-...
T Consensus 119 t~~~~~~~~~ak~~g~~~I~iT~~~~s~L~~ 149 (188)
T PRK13937 119 SPNVLAALEKARELGMKTIGLTGRDGGKMKE 149 (188)
T ss_pred cHHHHHHHHHHHHCCCeEEEEeCCCCChhHH
Confidence 5789999999999999999999976554443
No 229
>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit. GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose
Probab=29.72 E-value=2.4e+02 Score=28.04 Aligned_cols=33 Identities=15% Similarity=0.241 Sum_probs=24.0
Q ss_pred chhHHHHHHHHHHcC-CeEEEEeCCChhhhHHHHHhh
Q 014930 143 NGQVLQFVKMLREKG-KKLFLLTNSPYYFVDGGMRFM 178 (415)
Q Consensus 143 ~p~l~~~L~~Lr~~G-kklfLlTNS~~~yt~~vm~~l 178 (415)
-|-|.-+|+.|.++| +.++++|+.. .+.+.+|+
T Consensus 34 kPiI~~vl~~l~~~Gi~~ivivv~~~---~~~i~~~~ 67 (297)
T TIGR01105 34 KPMIQYIVDEIVAAGIKEIVLVTHAS---KNAVENHF 67 (297)
T ss_pred EEHHHHHHHHHHHCCCCEEEEEecCC---hHHHHHHH
Confidence 377888899999999 5677777753 33566665
No 230
>smart00098 alkPPc Alkaline phosphatase homologues.
Probab=29.47 E-value=65 Score=34.07 Aligned_cols=57 Identities=14% Similarity=0.218 Sum_probs=42.0
Q ss_pred chhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhhhccCCCCCCCccC-----------------------CccEEEEc
Q 014930 143 NGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRE-----------------------LFDVVIAQ 199 (415)
Q Consensus 143 ~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~~-----------------------~FD~vi~~ 199 (415)
...+..+|+..+++|+++-|||.+...-+..-.-|. +...++|.+ -+||++++
T Consensus 84 ~~~~~tIle~Ak~~G~~tGiVTT~~ithATPAafyA----H~~~R~~e~~~~i~~~~~~~~~~dIa~Ql~~~~~dVilGG 159 (419)
T smart00098 84 GKEVPSVLEWAKKAGKSTGLVTTTRITHATPAATYA----HVASRKWYNDADIPAEALENGCGDIARQLINNRIDVLLGG 159 (419)
T ss_pred CCcchhHHHHHHHcCCcEEEEeCcccCCCcchhhee----ecccccccchhhhHHHHhhcCCccHHHHHhhcCCcEEEeC
Confidence 345888899999999999999999887766644332 333566642 48988888
Q ss_pred CCCC
Q 014930 200 ANKP 203 (415)
Q Consensus 200 a~KP 203 (415)
.++-
T Consensus 160 G~~~ 163 (419)
T smart00098 160 GRSY 163 (419)
T ss_pred Cccc
Confidence 8764
No 231
>PTZ00174 phosphomannomutase; Provisional
Probab=29.29 E-value=1e+02 Score=29.40 Aligned_cols=32 Identities=19% Similarity=0.223 Sum_probs=26.8
Q ss_pred chhHHHHHHHHHHcCCeEEEEeCCChhhhHHH
Q 014930 143 NGQVLQFVKMLREKGKKLFLLTNSPYYFVDGG 174 (415)
Q Consensus 143 ~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~v 174 (415)
+|...+.|++++++|+++.++|..+..-+...
T Consensus 24 s~~~~~ai~~l~~~Gi~~viaTGR~~~~i~~~ 55 (247)
T PTZ00174 24 TQEMKDTLAKLKSKGFKIGVVGGSDYPKIKEQ 55 (247)
T ss_pred CHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHH
Confidence 46788999999999999999999988855443
No 232
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=28.82 E-value=42 Score=31.87 Aligned_cols=33 Identities=21% Similarity=0.242 Sum_probs=24.2
Q ss_pred HHHHHHHhCC--CCCcEEEEcccccccccccccCCc
Q 014930 241 LKSFLQITKW--NGPEVIYFGDHLFSDLRGPSKAGW 274 (415)
Q Consensus 241 ~~~~~~~~g~--~g~~vLYvGDhi~~Di~~~k~~Gw 274 (415)
++.+++..+. ...+|++|||+. +|+..-+.+|.
T Consensus 186 l~~l~~~~~~~~~~~~~i~~GD~~-nD~~ml~~ag~ 220 (225)
T TIGR02461 186 IKRLLDLYKLRPGAIESVGLGDSE-NDFPMFEVVDL 220 (225)
T ss_pred HHHHHHHhccccCcccEEEEcCCH-HHHHHHHhCCC
Confidence 4466676654 667899999999 99966555554
No 233
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=28.76 E-value=4.1e+02 Score=25.30 Aligned_cols=112 Identities=18% Similarity=0.275 Sum_probs=69.2
Q ss_pred hHHHHhcCcccccccchhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhhhccCCCCCCCccCCccEEEEcCCCCCCCC
Q 014930 128 VHRGILSDPNRYLVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYT 207 (415)
Q Consensus 128 lk~~v~~np~kYi~k~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~~~FD~vi~~a~KP~FF~ 207 (415)
+.++|.+-=++|-.+-.-.++++.+-...|-+++.+|.-..-=++.+..-|.+.++- .+. .-|+....||.-..
T Consensus 101 FW~~vn~g~D~~SIPKevA~qLI~MHq~RGD~i~FvTGRt~gk~d~vsk~Lak~F~i-----~~m-~pv~f~Gdk~k~~q 174 (237)
T COG3700 101 FWEKVNNGWDEFSIPKEVARQLIDMHQRRGDAIYFVTGRTPGKTDTVSKTLAKNFHI-----TNM-NPVIFAGDKPKPGQ 174 (237)
T ss_pred HHHHHhcCCccccchHHHHHHHHHHHHhcCCeEEEEecCCCCcccccchhHHhhccc-----CCC-cceeeccCCCCccc
Confidence 556666666677676666778888888899999999999888887776665432221 111 11344444441110
Q ss_pred CCCCceeeccCcccccccccccccCCeeeccCcHHHHHHHhCCCCCcEEEEcccccccccccccCCceEEEEec
Q 014930 208 SDHPFRCYDTEKDTLAFTKVDAFIPNKIYYHGCLKSFLQITKWNGPEVIYFGDHLFSDLRGPSKAGWRTAAIIH 281 (415)
Q Consensus 208 ~~~~fr~vd~~~~~~~~~~~~~l~~g~vY~~G~~~~~~~~~g~~g~~vLYvGDhi~~Di~~~k~~GwrT~lVvp 281 (415)
..+ .+.+.. .+-+ +.-||+- .||.+|+.+|-|.+-|..
T Consensus 175 ----------------y~K---------------t~~i~~---~~~~-IhYGDSD-~Di~AAkeaG~RgIRilR 212 (237)
T COG3700 175 ----------------YTK---------------TQWIQD---KNIR-IHYGDSD-NDITAAKEAGARGIRILR 212 (237)
T ss_pred ----------------ccc---------------cHHHHh---cCce-EEecCCc-hhhhHHHhcCccceeEEe
Confidence 000 122221 2333 4459999 999999999999887754
No 234
>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245. This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.
Probab=28.58 E-value=75 Score=29.99 Aligned_cols=41 Identities=7% Similarity=0.101 Sum_probs=37.3
Q ss_pred ccccccchhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhh
Q 014930 137 NRYLVKNGQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFM 178 (415)
Q Consensus 137 ~kYi~k~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l 178 (415)
..|+.+-|.+.++|+.+-+ ...+++=|-+...|++.+|+-+
T Consensus 41 ~~~~~kRP~l~eFL~~~~~-~feIvVwTAa~~~ya~~~l~~l 81 (195)
T TIGR02245 41 TGEELMRPYLHEFLTSAYE-DYDIVIWSATSMKWIEIKMTEL 81 (195)
T ss_pred CceEEeCCCHHHHHHHHHh-CCEEEEEecCCHHHHHHHHHHh
Confidence 4577899999999999987 5999999999999999999987
No 235
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=28.34 E-value=1.9e+02 Score=26.73 Aligned_cols=49 Identities=12% Similarity=0.097 Sum_probs=30.4
Q ss_pred HHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhhhccCCCCCCCccCCccEEEEcCCCCCCCC
Q 014930 146 VLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLEDSTGYTDSWRELFDVVIAQANKPDFYT 207 (415)
Q Consensus 146 l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l~~~~~~~g~~W~~~FD~vi~~a~KP~FF~ 207 (415)
+..+++...+.|.++||+-.++ +-++...+.+- +.|-.+.|++. .++|.
T Consensus 37 ~~~l~~~~~~~~~~vfllG~~~-~v~~~~~~~l~----------~~yP~l~i~g~--~g~f~ 85 (177)
T TIGR00696 37 MEELCQRAGKEKLPIFLYGGKP-DVLQQLKVKLI----------KEYPKLKIVGA--FGPLE 85 (177)
T ss_pred HHHHHHHHHHcCCeEEEECCCH-HHHHHHHHHHH----------HHCCCCEEEEE--CCCCC
Confidence 4566777778889999996555 45555555552 13344556655 66664
No 236
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=27.82 E-value=59 Score=29.39 Aligned_cols=31 Identities=23% Similarity=0.166 Sum_probs=25.6
Q ss_pred chhHHHHHHHHHHcCCeEEEEeCCChhhhHH
Q 014930 143 NGQVLQFVKMLREKGKKLFLLTNSPYYFVDG 173 (415)
Q Consensus 143 ~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~ 173 (415)
.+.+.+.++..|+.|.+++.+||++..-...
T Consensus 114 t~~~i~~~~~ak~~Ga~vI~IT~~~~s~La~ 144 (177)
T cd05006 114 SPNVLKALEAAKERGMKTIALTGRDGGKLLE 144 (177)
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCCCCCchhh
Confidence 4689999999999999999999986554433
No 237
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=27.43 E-value=53 Score=33.27 Aligned_cols=25 Identities=20% Similarity=0.382 Sum_probs=22.9
Q ss_pred hhHHHHHHHHHHcCCeEEEEeCCCh
Q 014930 144 GQVLQFVKMLREKGKKLFLLTNSPY 168 (415)
Q Consensus 144 p~l~~~L~~Lr~~GkklfLlTNS~~ 168 (415)
|.+.++++.+++.|..++|.||...
T Consensus 145 p~l~eli~~~k~~Gi~~~L~TNG~~ 169 (322)
T PRK13762 145 PYLPELIEEFHKRGFTTFLVTNGTR 169 (322)
T ss_pred hhHHHHHHHHHHcCCCEEEECCCCC
Confidence 5799999999999999999999965
No 238
>PF05240 APOBEC_C: APOBEC-like C-terminal domain; InterPro: IPR007904 This domain is found at the C terminus of the Apolipoprotein B mRNA editing enzyme. Apobec-1 catalyzes C to U editing of apolipoprotein B (apoB) mRNA in the mammalian intestine. C to U RNA editing of mammalian apolipoprotein B (apoB) RNA is a site-specific posttranscriptional modification in which a single cytidine is enzymatically deaminated to uridine, thereby generating a UAA stop codon in the edited mRNA. The function of this domain is currently unknown.; GO: 0008270 zinc ion binding, 0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines; PDB: 2NYT_D.
Probab=27.38 E-value=43 Score=25.34 Aligned_cols=29 Identities=14% Similarity=0.287 Sum_probs=21.8
Q ss_pred chhHHHHHHHHHHcCCeEEEEeCCChhhh
Q 014930 143 NGQVLQFVKMLREKGKKLFLLTNSPYYFV 171 (415)
Q Consensus 143 ~p~l~~~L~~Lr~~GkklfLlTNS~~~yt 171 (415)
+|.-.+-|.+|.++|.+|-++|=+.+.|+
T Consensus 1 d~~~qegLr~L~~aG~~v~iM~~~eF~~C 29 (55)
T PF05240_consen 1 DPDYQEGLRRLCQAGAQVSIMTYSEFQYC 29 (55)
T ss_dssp SHHHHHHHHHHHHTT-EEEE--HHHHHHH
T ss_pred CcHHHHHHHHHHHCCCeEEecCcHHHHHH
Confidence 46778899999999999999987777665
No 239
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=27.27 E-value=78 Score=26.34 Aligned_cols=26 Identities=19% Similarity=0.400 Sum_probs=22.9
Q ss_pred hhHHHHHHHHHHcCCeEEEEeCCChh
Q 014930 144 GQVLQFVKMLREKGKKLFLLTNSPYY 169 (415)
Q Consensus 144 p~l~~~L~~Lr~~GkklfLlTNS~~~ 169 (415)
+.+...++.+++.|.+++++|++...
T Consensus 74 ~~~~~~~~~a~~~g~~iv~iT~~~~~ 99 (139)
T cd05013 74 KETVEAAEIAKERGAKVIAITDSANS 99 (139)
T ss_pred HHHHHHHHHHHHcCCeEEEEcCCCCC
Confidence 56888999999999999999998664
No 240
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=26.91 E-value=78 Score=28.62 Aligned_cols=31 Identities=19% Similarity=0.311 Sum_probs=25.7
Q ss_pred chhHHHHHHHHHHcCCeEEEEeCCChhhhHH
Q 014930 143 NGQVLQFVKMLREKGKKLFLLTNSPYYFVDG 173 (415)
Q Consensus 143 ~p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~ 173 (415)
.+.+...++..|+.|.+++.+|+++..-...
T Consensus 88 t~~~i~~~~~ak~~g~~iI~IT~~~~s~la~ 118 (179)
T cd05005 88 TSSVVNAAEKAKKAGAKVVLITSNPDSPLAK 118 (179)
T ss_pred cHHHHHHHHHHHHCCCeEEEEECCCCCchHH
Confidence 4688899999999999999999987654443
No 241
>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase. This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.
Probab=26.71 E-value=3.5e+02 Score=25.29 Aligned_cols=33 Identities=6% Similarity=0.045 Sum_probs=23.2
Q ss_pred hhHHHHHHHHHHcCC-eEEEEeCCChhhhHHHHHhh
Q 014930 144 GQVLQFVKMLREKGK-KLFLLTNSPYYFVDGGMRFM 178 (415)
Q Consensus 144 p~l~~~L~~Lr~~Gk-klfLlTNS~~~yt~~vm~~l 178 (415)
|=+.-.|+.|+++|. +++++++.. ..+.++.++
T Consensus 32 pli~~~l~~l~~~gi~~i~vv~~~~--~~~~~~~~l 65 (240)
T cd02538 32 PMIYYPLSTLMLAGIREILIISTPE--DLPLFKELL 65 (240)
T ss_pred EhHHHHHHHHHHCCCCEEEEEeCcc--hHHHHHHHH
Confidence 667788999999995 566777643 234566666
No 242
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=25.89 E-value=75 Score=31.00 Aligned_cols=51 Identities=18% Similarity=0.240 Sum_probs=38.2
Q ss_pred cchhhHHHHhcCcccccccchhHHHHHHHHHH-cCCeEEEEeCCChhhhHHHHH
Q 014930 124 RRGLVHRGILSDPNRYLVKNGQVLQFVKMLRE-KGKKLFLLTNSPYYFVDGGMR 176 (415)
Q Consensus 124 ~~G~lk~~v~~np~kYi~k~p~l~~~L~~Lr~-~GkklfLlTNS~~~yt~~vm~ 176 (415)
.+|+|-.. ..+|+. ...+|.+.++|++|++ .|.+++++|..+...+..++.
T Consensus 21 ~DGTLl~~-~~~p~~-~~i~~~~~~~L~~L~~~~g~~v~i~SGR~~~~~~~~~~ 72 (266)
T PRK10187 21 LDGTLAEI-KPHPDQ-VVVPDNILQGLQLLATANDGALALISGRSMVELDALAK 72 (266)
T ss_pred cCCCCCCC-CCCccc-ccCCHHHHHHHHHHHhCCCCcEEEEeCCCHHHHHHhcC
Confidence 35666653 244555 3456889999999998 799999999999998876543
No 243
>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase. This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in
Probab=25.66 E-value=3.9e+02 Score=24.64 Aligned_cols=32 Identities=13% Similarity=0.129 Sum_probs=23.1
Q ss_pred hhHHHHHHHHHHcC-CeEEEEeCCChhhhHHHHHhh
Q 014930 144 GQVLQFVKMLREKG-KKLFLLTNSPYYFVDGGMRFM 178 (415)
Q Consensus 144 p~l~~~L~~Lr~~G-kklfLlTNS~~~yt~~vm~~l 178 (415)
|-+.-.|+.|.++| .+++++|+.. .+.+.+++
T Consensus 32 ~li~~~l~~l~~~~~~~i~vv~~~~---~~~~~~~~ 64 (236)
T cd04189 32 PIIQYAIEDLREAGIEDIGIVVGPT---GEEIKEAL 64 (236)
T ss_pred chHHHHHHHHHHCCCCEEEEEcCCC---HHHHHHHh
Confidence 66777888898887 4688888873 44555665
No 244
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=25.19 E-value=1.3e+02 Score=27.41 Aligned_cols=38 Identities=13% Similarity=0.267 Sum_probs=35.0
Q ss_pred hhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhhhcc
Q 014930 144 GQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFMLED 181 (415)
Q Consensus 144 p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l~~~ 181 (415)
|++.++..++.++|.++.-+|.-+..-++...+||-.-
T Consensus 30 ~g~~~l~~~i~~~GY~ilYlTaRp~~qa~~Tr~~L~~~ 67 (157)
T PF08235_consen 30 PGAAELYRKIADNGYKILYLTARPIGQANRTRSWLAQH 67 (157)
T ss_pred hcHHHHHHHHHHCCeEEEEECcCcHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999998643
No 245
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=24.49 E-value=2.1e+02 Score=28.75 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Q 014930 325 CQLLLAELNEERQKARRMMKKMF 347 (415)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~f 347 (415)
.+-.+++.++||++|++.++.+=
T Consensus 115 AQLALKEARkEIkQLkQvieTmr 137 (305)
T PF15290_consen 115 AQLALKEARKEIKQLKQVIETMR 137 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34457788888888888765433
No 246
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=24.42 E-value=1.3e+02 Score=28.52 Aligned_cols=34 Identities=18% Similarity=0.077 Sum_probs=26.8
Q ss_pred hHHHHHHHHHHcCCeEEEEeCC--ChhhhHHHHHhh
Q 014930 145 QVLQFVKMLREKGKKLFLLTNS--PYYFVDGGMRFM 178 (415)
Q Consensus 145 ~l~~~L~~Lr~~GkklfLlTNS--~~~yt~~vm~~l 178 (415)
-+.++++.+|+.|..+.|.||- +++....++.++
T Consensus 55 fl~~l~~~~k~~gi~~~leTnG~~~~~~~~~l~~~~ 90 (213)
T PRK10076 55 FATRFLQRLRLWGVSCAIETAGDAPASKLLPLAKLC 90 (213)
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHhc
Confidence 3788999999999999999999 445555655543
No 247
>PF14251 DUF4346: Domain of unknown function (DUF4346)
Probab=22.83 E-value=73 Score=27.83 Aligned_cols=38 Identities=21% Similarity=0.261 Sum_probs=26.7
Q ss_pred CCCCCcccCeeeecCCCeEEEecCCCceeeeccccCCC
Q 014930 16 YDPNFPIRGLYYDKQKGCLLKLDFFGSIEPDGCYFGRR 53 (415)
Q Consensus 16 ydp~F~iRGL~~D~~~GnlLKld~~g~I~~~~~~hG~~ 53 (415)
|--..--+||.+|.++|-++.......-....+|.|.+
T Consensus 36 ~~n~I~~~Gla~Dpetge~i~~~g~~~r~~~~~~~GrT 73 (119)
T PF14251_consen 36 YTNDIDDKGLAVDPETGEVIPCRGKVKRTPSIVFKGRT 73 (119)
T ss_pred ccCccCcccceeCCCCCCEEEEecCCCCceeEEEecCC
Confidence 44445568999999999999988654333344678843
No 248
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=22.64 E-value=52 Score=31.47 Aligned_cols=26 Identities=31% Similarity=0.469 Sum_probs=23.4
Q ss_pred HHHHHHHhCCCCCcEEEEccccccccc
Q 014930 241 LKSFLQITKWNGPEVIYFGDHLFSDLR 267 (415)
Q Consensus 241 ~~~~~~~~g~~g~~vLYvGDhi~~Di~ 267 (415)
+..+++.+|+..++|+.|||.. +|+-
T Consensus 194 l~~l~~~lgi~~~~v~afGD~~-ND~~ 219 (264)
T COG0561 194 LQRLAKLLGIKLEEVIAFGDST-NDIE 219 (264)
T ss_pred HHHHHHHhCCCHHHeEEeCCcc-ccHH
Confidence 5678889999999999999999 9984
No 249
>COG4030 Uncharacterized protein conserved in archaea [Function unknown]
Probab=22.19 E-value=68 Score=31.50 Aligned_cols=34 Identities=9% Similarity=0.108 Sum_probs=25.7
Q ss_pred hhHHHHHHHHHHcCCeEEEEeCCChhhhHHHHHhh
Q 014930 144 GQVLQFVKMLREKGKKLFLLTNSPYYFVDGGMRFM 178 (415)
Q Consensus 144 p~l~~~L~~Lr~~GkklfLlTNS~~~yt~~vm~~l 178 (415)
|+..+.+..|.+. -.-++++-|-..|..++.+.+
T Consensus 86 PgA~etm~~l~~~-~tp~v~STSY~qy~~r~a~~i 119 (315)
T COG4030 86 PGAEETMATLQER-WTPVVISTSYTQYLRRTASMI 119 (315)
T ss_pred CChHHHHHHHhcc-CCceEEeccHHHHHHHHHHhc
Confidence 5666666666544 367889999999999988876
No 250
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=21.82 E-value=1e+02 Score=30.91 Aligned_cols=26 Identities=15% Similarity=0.078 Sum_probs=22.8
Q ss_pred chhHHHHHHHHHHc----CCeEEEEeCCCh
Q 014930 143 NGQVLQFVKMLREK----GKKLFLLTNSPY 168 (415)
Q Consensus 143 ~p~l~~~L~~Lr~~----GkklfLlTNS~~ 168 (415)
-|+..+.|+.|++. |++++++||+.-
T Consensus 18 i~ga~eal~~L~~~~~~~g~~~~flTNn~g 47 (321)
T TIGR01456 18 IAGASDALRRLNRNQGQLKIPYIFLTNGGG 47 (321)
T ss_pred cHHHHHHHHHHhccccccCCCEEEEecCCC
Confidence 46788899999998 999999999973
No 251
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=21.55 E-value=1.1e+02 Score=23.38 Aligned_cols=22 Identities=18% Similarity=0.365 Sum_probs=20.2
Q ss_pred chhHHHHHHHHHHcCCeEEEEe
Q 014930 143 NGQVLQFVKMLREKGKKLFLLT 164 (415)
Q Consensus 143 ~p~l~~~L~~Lr~~GkklfLlT 164 (415)
.+++..+++.+|+.|.+++.+|
T Consensus 60 t~~~~~~~~~a~~~g~~ii~it 81 (87)
T cd04795 60 TEELLAALEIAKELGIPVIAIT 81 (87)
T ss_pred CHHHHHHHHHHHHcCCeEEEEe
Confidence 4689999999999999999999
No 252
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=20.86 E-value=64 Score=31.22 Aligned_cols=37 Identities=11% Similarity=0.143 Sum_probs=29.1
Q ss_pred HHHHHHHhCC---CCCcEEEEcccccccccccccCCceEEEE
Q 014930 241 LKSFLQITKW---NGPEVIYFGDHLFSDLRGPSKAGWRTAAI 279 (415)
Q Consensus 241 ~~~~~~~~g~---~g~~vLYvGDhi~~Di~~~k~~GwrT~lV 279 (415)
++.+++.+|+ +.++|+.|||.. +|+-=-+.+|+ .+++
T Consensus 192 l~~l~~~lgi~~~~~~~viafGDs~-NDi~Ml~~ag~-gvAM 231 (271)
T PRK03669 192 ANWLIATYQQLSGTRPTTLGLGDGP-NDAPLLDVMDY-AVVV 231 (271)
T ss_pred HHHHHHHHHhhcCCCceEEEEcCCH-HHHHHHHhCCE-EEEe
Confidence 6688999999 999999999999 99954444554 4444
No 253
>PRK14804 ornithine carbamoyltransferase; Provisional
Probab=20.41 E-value=81 Score=31.84 Aligned_cols=39 Identities=15% Similarity=0.124 Sum_probs=27.7
Q ss_pred HHHHhC---CCCCcEEEEccc---ccccccccccCCceEEEEecc
Q 014930 244 FLQITK---WNGPEVIYFGDH---LFSDLRGPSKAGWRTAAIIHE 282 (415)
Q Consensus 244 ~~~~~g---~~g~~vLYvGDh---i~~Di~~~k~~GwrT~lVvpE 282 (415)
+.+..| ++|..|+||||| ..+.+....+.|..-.++.|.
T Consensus 142 i~e~~g~~~l~g~~va~vGd~~rv~~Sl~~~~~~~G~~v~~~~P~ 186 (311)
T PRK14804 142 IALDSPEIPLNQKQLTYIGVHNNVVNSLIGITAALGIHLTLVTPI 186 (311)
T ss_pred HHHHhCCCCCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEECCC
Confidence 344455 688999999996 223334445679999999984
No 254
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=20.27 E-value=2.1e+02 Score=28.59 Aligned_cols=57 Identities=12% Similarity=0.191 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHhhcchhhHHHHhcCcccccccchhHHHHHHHHHHcCCeEEEEeCCCh
Q 014930 111 IYEDVNRAIQHVHRRGLVHRGILSDPNRYLVKNGQVLQFVKMLREKGKKLFLLTNSPY 168 (415)
Q Consensus 111 l~~DV~~av~~~h~~G~lk~~v~~np~kYi~k~p~l~~~L~~Lr~~GkklfLlTNS~~ 168 (415)
...||.+|+..+-.+-..++.|..|+-- |++|..+-+.++-|...|.--.|+|+|.-
T Consensus 219 t~~dI~~aia~g~~~~kV~~~M~k~vit-I~eDe~i~dAir~M~~~nVGRLlV~ds~g 275 (294)
T COG2524 219 TLSDIAKAIANGNLDAKVSDYMRKNVIT-INEDEDIYDAIRLMNKNNVGRLLVTDSNG 275 (294)
T ss_pred EHHHHHHHHHcCCccccHHHHhccCCce-EcCchhHHHHHHHHHhcCcceEEEEccCC
Confidence 5789999999877666677777777654 88899999999999999988899998764
No 255
>PLN02177 glycerol-3-phosphate acyltransferase
Probab=20.17 E-value=2.7e+02 Score=30.05 Aligned_cols=28 Identities=25% Similarity=0.579 Sum_probs=22.5
Q ss_pred HHHHHHcCCeEEEEeCCChhhhHHHHH-hh
Q 014930 150 VKMLREKGKKLFLLTNSPYYFVDGGMR-FM 178 (415)
Q Consensus 150 L~~Lr~~GkklfLlTNS~~~yt~~vm~-~l 178 (415)
++.++++|.. .|+|-|+..+++.+++ |+
T Consensus 116 ~~~~~~~g~~-vvVSASp~~~Vepfa~~~L 144 (497)
T PLN02177 116 WRVFNSFGKR-YIITASPRIMVEPFVKTFL 144 (497)
T ss_pred HHHHHhCCCE-EEEECCcHHHHHHHHHHcC
Confidence 3456778865 9999999999999985 45
No 256
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=20.05 E-value=1.4e+02 Score=25.08 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=21.5
Q ss_pred chhHHHHHHHHHHcCCeEEEEeCCC
Q 014930 143 NGQVLQFVKMLREKGKKLFLLTNSP 167 (415)
Q Consensus 143 ~p~l~~~L~~Lr~~GkklfLlTNS~ 167 (415)
.+++.+.++..|+.|.+++.+|+..
T Consensus 56 t~e~i~~~~~a~~~g~~iI~IT~~~ 80 (119)
T cd05017 56 TEETLSAVEQAKERGAKIVAITSGG 80 (119)
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 3578889999999999999999654
Done!