BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014934
(415 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 259 bits (662), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 146/378 (38%), Positives = 205/378 (54%), Gaps = 28/378 (7%)
Query: 47 DRFIPSRSSSNFDLFNISQPSPNSPAVTDSHKDDNSGTYTALLRAALFGPETPEKKDVLG 106
DR+IP RS++ ++ + N P + + AL L G + E K
Sbjct: 9 DRYIPHRSAAQMEVASFLLSKENQPENSQTPTKKEHQKAWAL---NLNGFDVEEAK---- 61
Query: 107 PPSGRNIFRFKSETRRSLHSLSPFGFDDDVASGVSH-----SPVKAPRKVPRSPYKILDA 161
I R + + + P G+ + + S S K R +P P +ILDA
Sbjct: 62 ------ILRLSGKPQNA-----PEGYQNRLKVLYSQKATPGSSRKTCRYIPSLPDRILDA 110
Query: 162 PALQDDFYLNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGI-DDSVCSVGWANRN 220
P +++D+YLNLVDWSS NVLAV L N VYLW+A S + +L + + + SV W
Sbjct: 111 PEIRNDYYLNLVDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEG 170
Query: 221 THLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVXXXXXXXXXXXXXXRDKSILQRDIRAQ 280
+LAVGTS +VQ+WD + KR+R M H RV R I D+R
Sbjct: 171 NYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVA 230
Query: 281 EDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVW----NQHSTQPVLKYCEHTAAV 336
E V+ LSGH EVCGL+W+ D R LASGGNDN + VW + P+ + +H AV
Sbjct: 231 EHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAV 290
Query: 337 KAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTH 396
KA+AW P +LA+GGGT+DR IR WN + LS +D SQVC+++WS + EL+S H
Sbjct: 291 KAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGH 350
Query: 397 GYSQNQIIVWRYPTMSKV 414
G++QNQ+++W+YPTM+KV
Sbjct: 351 GFAQNQLVIWKYPTMAKV 368
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 66/168 (39%), Gaps = 14/168 (8%)
Query: 206 GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKR----VRTMEGHRLRVXXXXXXXX 261
G VC + WA HLA G + V +W ++ + ++T H+ V
Sbjct: 239 GHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPW 298
Query: 262 XXXXXXRDKSILQRDIR----AQEDFVSKLSGHKSEVCGLKWSYDNRELASGGN--DNRL 315
R IR +S + H S+VC + WS +EL SG N+L
Sbjct: 299 QSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQL 357
Query: 316 FVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFW 363
+W + V + HT+ V ++ SP +AS AD +R W
Sbjct: 358 VIWKYPTMAKVAELKGHTSRVLSLTMSPD-GATVAS--AAADETLRLW 402
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 49/151 (32%), Gaps = 53/151 (35%)
Query: 175 WSSHNVLAVGLGNC---VYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGK 231
W S NVLA G G + +WN CS D VCS+ W+ L G HG
Sbjct: 298 WQS-NVLATGGGTSDRHIRIWNVCSGACLSAVD--AHSQVCSILWSPHYKELISG--HGF 352
Query: 232 VQ----IWDASRCKRVRTMEGHRLRVXXXXXXXXXXXXXXRDKSILQRDIRAQEDFVSKL 287
Q IW + TM V++L
Sbjct: 353 AQNQLVIW------KYPTMAK-----------------------------------VAEL 371
Query: 288 SGHKSEVCGLKWSYDNRELASGGNDNRLFVW 318
GH S V L S D +AS D L +W
Sbjct: 372 KGHTSRVLSLTMSPDGATVASAAADETLRLW 402
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 255 bits (651), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 126/274 (45%), Positives = 170/274 (62%), Gaps = 5/274 (1%)
Query: 146 KAPRKVPRSPYKILDAPALQDDFYLNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDL 205
K R +P P +ILDAP +++D+YLNLVDWSS NVLAV L N VYLW+A S + +L +
Sbjct: 84 KTCRYIPSLPDRILDAPEIRNDYYLNLVDWSSGNVLAVALDNSVYLWSASSGDILQLLQM 143
Query: 206 GI-DDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVXXXXXXXXXXX 264
+ + SV W +LAVGTS +VQ+WD + KR+R M H RV
Sbjct: 144 EQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILS 203
Query: 265 XXXRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVW----NQ 320
R I D+R E V+ LSGH EVCGL+W+ D R LASGGNDN + VW +
Sbjct: 204 SGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGE 263
Query: 321 HSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQV 380
P+ + +H AVKA+AW P +LA+GGGT+DR IR WN + LS +D SQV
Sbjct: 264 GGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQV 323
Query: 381 CNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKV 414
C+++WS + EL+S HG++QNQ+++W+YPTM+KV
Sbjct: 324 CSILWSPHYKELISGHGFAQNQLVIWKYPTMAKV 357
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 66/168 (39%), Gaps = 14/168 (8%)
Query: 206 GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKR----VRTMEGHRLRVXXXXXXXX 261
G VC + WA HLA G + V +W ++ + ++T H+ V
Sbjct: 228 GHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPW 287
Query: 262 XXXXXXRDKSILQRDIR----AQEDFVSKLSGHKSEVCGLKWSYDNRELASGGN--DNRL 315
R IR +S + H S+VC + WS +EL SG N+L
Sbjct: 288 QSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQL 346
Query: 316 FVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFW 363
+W + V + HT+ V ++ SP +AS AD +R W
Sbjct: 347 VIWKYPTMAKVAELKGHTSRVLSLTMSPD-GATVAS--AAADETLRLW 391
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 49/151 (32%), Gaps = 53/151 (35%)
Query: 175 WSSHNVLAVGLGNC---VYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGK 231
W S NVLA G G + +WN CS D VCS+ W+ L G HG
Sbjct: 287 WQS-NVLATGGGTSDRHIRIWNVCSGACLSAVD--AHSQVCSILWSPHYKELISG--HGF 341
Query: 232 VQ----IWDASRCKRVRTMEGHRLRVXXXXXXXXXXXXXXRDKSILQRDIRAQEDFVSKL 287
Q IW + TM V++L
Sbjct: 342 AQNQLVIW------KYPTMAK-----------------------------------VAEL 360
Query: 288 SGHKSEVCGLKWSYDNRELASGGNDNRLFVW 318
GH S V L S D +AS D L +W
Sbjct: 361 KGHTSRVLSLTMSPDGATVASAAADETLRLW 391
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 253 bits (646), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 126/274 (45%), Positives = 170/274 (62%), Gaps = 5/274 (1%)
Query: 146 KAPRKVPRSPYKILDAPALQDDFYLNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDL 205
K R +P P +ILDAP +++D+YLNLVDWSS NVLAV L N VYLW+A S + +L +
Sbjct: 4 KTCRYIPSLPDRILDAPEIRNDYYLNLVDWSSGNVLAVALDNSVYLWSASSGDILQLLQM 63
Query: 206 GI-DDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVXXXXXXXXXXX 264
+ + SV W +LAVGTS +VQ+WD + KR+R M H RV
Sbjct: 64 EQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILS 123
Query: 265 XXXRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVW----NQ 320
R I D+R E V+ LSGH EVCGL+W+ D R LASGGNDN + VW +
Sbjct: 124 SGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGE 183
Query: 321 HSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQV 380
P+ + +H AVKA+AW P +LA+GGGT+DR IR WN + LS +D SQV
Sbjct: 184 GGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQV 243
Query: 381 CNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKV 414
C+++WS + EL+S HG++QNQ+++W+YPTM+KV
Sbjct: 244 CSILWSPHYKELISGHGFAQNQLVIWKYPTMAKV 277
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 66/168 (39%), Gaps = 14/168 (8%)
Query: 206 GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKR----VRTMEGHRLRVXXXXXXXX 261
G VC + WA HLA G + V +W ++ + ++T H+ V
Sbjct: 148 GHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPW 207
Query: 262 XXXXXXRDKSILQRDIR----AQEDFVSKLSGHKSEVCGLKWSYDNRELASGGN--DNRL 315
R IR +S + H S+VC + WS +EL SG N+L
Sbjct: 208 QSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQL 266
Query: 316 FVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFW 363
+W + V + HT+ V ++ SP + ++ AD +R W
Sbjct: 267 VIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASA---AADETLRLW 311
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 225 bits (574), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 113/267 (42%), Positives = 156/267 (58%), Gaps = 2/267 (0%)
Query: 144 PVKAP--RKVPRSPYKILDAPALQDDFYLNLVDWSSHNVLAVGLGNCVYLWNACSSKVTK 201
PV P R+ +P ++LDAP + DD+YLNL+DWS+ NV+AV L VY+WNA S V+
Sbjct: 68 PVVTPAKRRFNTTPERVLDAPGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSA 127
Query: 202 LCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVXXXXXXXX 261
L + V SV W++ + L+VG +G V I+D ++RTM GH+ RV
Sbjct: 128 LAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNRH 187
Query: 262 XXXXXXRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQH 321
R +I D+R + L GH SEVCGL W D +LASGGNDN + +W+
Sbjct: 188 VLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDAR 247
Query: 322 STQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVC 381
S+ P H AAVKA+AW P LLA+GGGT D+ I FWN T ++ +D GSQV
Sbjct: 248 SSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVT 307
Query: 382 NLVWSKNVNELVSTHGYSQNQIIVWRY 408
+L+WS + E++STHG+ N + +W Y
Sbjct: 308 SLIWSPHSKEIMSTHGFPDNNLSIWSY 334
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 83/179 (46%), Gaps = 11/179 (6%)
Query: 188 CVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTME 247
V LWN + L G SV V ++ +A + V++W+ + ++T+
Sbjct: 326 TVKLWNRNGQHLQTLT--GHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLT 382
Query: 248 GHR--LRVXXXXXXXXXXXXXXRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRE 305
GH +R DK++ + Q + L+GH S V G+ +S D++
Sbjct: 383 GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ--LLQTLTGHSSSVWGVAFSPDDQT 440
Query: 306 LASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWN 364
+AS +D + +WN++ Q + H+++V+ +A+SP + ++ + D+ ++ WN
Sbjct: 441 IASASDDKTVKLWNRNG-QLLQTLTGHSSSVRGVAFSPDGQTIASA---SDDKTVKLWN 495
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 81/179 (45%), Gaps = 11/179 (6%)
Query: 188 CVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTME 247
V LWN + L G SV V ++ +A + V++W+ + ++T+
Sbjct: 80 TVKLWNRNGQLLQTLT--GHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLT 136
Query: 248 GHRLRVXXXXXX--XXXXXXXXRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRE 305
GH V DK++ + Q + L+GH S V G+ +S D +
Sbjct: 137 GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ--LLQTLTGHSSSVWGVAFSPDGQT 194
Query: 306 LASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWN 364
+AS +D + +WN++ Q + H+++V+ +A+SP + ++ + D+ ++ WN
Sbjct: 195 IASASDDKTVKLWNRNG-QLLQTLTGHSSSVRGVAFSPDGQTIASA---SDDKTVKLWN 249
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 81/179 (45%), Gaps = 11/179 (6%)
Query: 188 CVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTME 247
V LWN + L G SV V ++ +A + V++W+ + ++T+
Sbjct: 39 TVKLWNRNGQLLQTLT--GHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLT 95
Query: 248 GHR--LRVXXXXXXXXXXXXXXRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRE 305
GH +R DK++ + Q + L+GH S V G+ +S D +
Sbjct: 96 GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ--LLQTLTGHSSSVWGVAFSPDGQT 153
Query: 306 LASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWN 364
+AS +D + +WN++ Q + H+++V +A+SP + ++ + D+ ++ WN
Sbjct: 154 IASASDDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFSPDGQTIASA---SDDKTVKLWN 208
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 81/179 (45%), Gaps = 11/179 (6%)
Query: 188 CVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTME 247
V LWN + L G SV V ++ +A + V++W+ + ++T+
Sbjct: 367 TVKLWNRNGQLLQTLT--GHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLT 423
Query: 248 GHRLRVXXXXXX--XXXXXXXXRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRE 305
GH V DK++ + Q + L+GH S V G+ +S D +
Sbjct: 424 GHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQ--LLQTLTGHSSSVRGVAFSPDGQT 481
Query: 306 LASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWN 364
+AS +D + +WN++ Q + H+++V+ +A+SP + ++ + D+ ++ WN
Sbjct: 482 IASASDDKTVKLWNRNG-QLLQTLTGHSSSVRGVAFSPDGQTIASA---SDDKTVKLWN 536
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 80/179 (44%), Gaps = 11/179 (6%)
Query: 188 CVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTME 247
V LWN + L G SV V ++ +A + V++W+ + ++T+
Sbjct: 203 TVKLWNRNGQLLQTLT--GHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLT 259
Query: 248 GHRLRVXXXXXX--XXXXXXXXRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRE 305
GH V DK++ + Q + L+GH S V G+ +S D +
Sbjct: 260 GHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQ--LLQTLTGHSSSVWGVAFSPDGQT 317
Query: 306 LASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWN 364
+AS +D + +WN++ Q + H+++V +A+SP + ++ + D+ ++ WN
Sbjct: 318 IASASDDKTVKLWNRNG-QHLQTLTGHSSSVWGVAFSPDGQTIASA---SDDKTVKLWN 372
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 44/79 (55%), Gaps = 4/79 (5%)
Query: 286 KLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHL 345
+L H S V G+ +S D + +AS +D + +WN++ Q + H+++V +A+SP
Sbjct: 11 RLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFSPDG 69
Query: 346 HGLLASGGGTADRCIRFWN 364
+ ++ + D+ ++ WN
Sbjct: 70 QTIASA---SDDKTVKLWN 85
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 57/134 (42%), Gaps = 7/134 (5%)
Query: 188 CVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTME 247
V LWN + L G SV V ++ +A + V++W+ + ++T+
Sbjct: 449 TVKLWNRNGQLLQTLT--GHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLT 505
Query: 248 GHR--LRVXXXXXXXXXXXXXXRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRE 305
GH +R DK++ + Q + L+GH S V G+ +S D +
Sbjct: 506 GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ--LLQTLTGHSSSVWGVAFSPDGQT 563
Query: 306 LASGGNDNRLFVWN 319
+AS +D + +WN
Sbjct: 564 IASASSDKTVKLWN 577
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 286 KLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWN-QHSTQPVLKYCEHTAAVKAIAWSPH 344
K GH +V + +S DNR++ SGG DN L VWN + L HT V + +SP
Sbjct: 104 KFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPS 163
Query: 345 LHGLLASGGGTADRCIRFWNTTT 367
L + GG D ++ W+ T
Sbjct: 164 LDAPVIVSGGW-DNLVKVWDLAT 185
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 56/131 (42%), Gaps = 13/131 (9%)
Query: 286 KLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHL 345
+L GH + V + S + S D+ L +WN + Q K+ HT V ++A+SP
Sbjct: 62 RLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDN 121
Query: 346 HGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVW------SKNVNELVSTHGYS 399
+++ G D +R WN CM T S+ + W S +++ V G
Sbjct: 122 RQIVSGG---RDNALRVWNVKGE----CMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGW 174
Query: 400 QNQIIVWRYPT 410
N + VW T
Sbjct: 175 DNLVKVWDLAT 185
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 3/89 (3%)
Query: 300 SYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRC 359
S D + SGG DN + VW+ + + V HT V ++ SP L AS D
Sbjct: 163 SLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPD-GSLCAS--SDKDGV 219
Query: 360 IRFWNTTTNTHLSCMDTGSQVCNLVWSKN 388
R W+ T LS M G+ + + +S N
Sbjct: 220 ARLWDLTKGEALSEMAAGAPINQICFSPN 248
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 63/139 (45%), Gaps = 16/139 (11%)
Query: 280 QEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVW------NQHSTQPVLKYCEHT 333
+ D ++ + GH++EV G+ WS D LA+ D +++W ++ VL+ EH+
Sbjct: 96 EMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQ--EHS 153
Query: 334 AAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELV 393
VK + W P LLAS + D +R W + C+ + VWS + ++
Sbjct: 154 QDVKHVIWHPS-EALLAS--SSYDDTVRIWK-DYDDDWECVAVLNGHEGTVWSSDFDKTE 209
Query: 394 STH----GYSQNQIIVWRY 408
G + + VW+Y
Sbjct: 210 GVFRLCSGSDDSTVRVWKY 228
Score = 31.6 bits (70), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 9/71 (12%)
Query: 299 WSYDNRE--LASGGNDNRLFV----WNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASG 352
WS+D + LA+G D ++ + ++ + VL H A++++AW PH LLA+
Sbjct: 18 WSFDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHT-SLLAA- 75
Query: 353 GGTADRCIRFW 363
G+ D + W
Sbjct: 76 -GSFDSTVSIW 85
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 77/188 (40%), Gaps = 20/188 (10%)
Query: 206 GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVXXXXXX--XXXX 263
G DSV + + + LA ++ +++WD + +RTM GH V
Sbjct: 148 GHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHI 207
Query: 264 XXXXRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHST 323
RDK+I +++ V +GH+ V ++ + D +AS ND + VW +
Sbjct: 208 VSASRDKTIKMWEVQTGY-CVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATK 266
Query: 324 QPVLKYCEHTAAVKAIAWSPH--LHGLLASGG---------------GTADRCIRFWNTT 366
+ + EH V+ I+W+P + + G G+ D+ I+ W+ +
Sbjct: 267 ECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS 326
Query: 367 TNTHLSCM 374
T L +
Sbjct: 327 TGMCLMTL 334
Score = 28.1 bits (61), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 18/87 (20%), Positives = 38/87 (43%), Gaps = 3/87 (3%)
Query: 282 DFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAW 341
DF L GH V + + + + LAS D + +W+ + + H V +++
Sbjct: 141 DFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSI 200
Query: 342 SPHLHGLLASGGGTADRCIRFWNTTTN 368
P+ ++++ + D+ I+ W T
Sbjct: 201 MPNGDHIVSA---SRDKTIKMWEVQTG 224
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 71/173 (41%), Gaps = 14/173 (8%)
Query: 201 KLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDAS--RCKRVRTMEGHRLRVXXXXX 258
KL ++ I + V +N +AVG KV ++ S V+T+ H +
Sbjct: 441 KLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIV-HPAEITSVAF 499
Query: 259 XXXXXXXXXRDKSILQRDIRAQEDF----VSKLSGHKSEVCGLKWSYDNRELASGGNDNR 314
D+S +F + + H ++V + WS DN LA+G DN
Sbjct: 500 SNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNS 559
Query: 315 LFVWNQH--STQPVLKYCEHT-AAVKAIAWSPHLHGLLASGGGTADRCIRFWN 364
+ VWN + S P++ H ++V ++ W + S G D I+FWN
Sbjct: 560 VIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNET--TIVSAG--QDSNIKFWN 608
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 281 EDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWN 319
ED K H V GL WS D ++AS D + +WN
Sbjct: 229 EDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWN 267
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 46/114 (40%), Gaps = 13/114 (11%)
Query: 306 LASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNT 365
+ SG +DN + ++ + + EHT V ++ ++P L AS GG D I +N
Sbjct: 163 IISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPD-GSLFASTGG--DGTIVLYNG 219
Query: 366 TTNTHLSCMDTGS--------QVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTM 411
T + S V L WS + ++ S + I +W T+
Sbjct: 220 VDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASAS--ADKTIKIWNVATL 271
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 17/117 (14%)
Query: 269 DKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRE-LASGGNDNRLFVWN------QH 321
DK++ D+R + + HK E+ ++WS N LAS G D RL VW+ +
Sbjct: 299 DKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQ 358
Query: 322 STQ------PVLKYCE--HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTH 370
ST+ P L + HTA + +W+P+ ++ S + D ++ W N +
Sbjct: 359 STEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICS--VSEDNIMQVWQMAENVY 413
Score = 35.8 bits (81), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 10/91 (10%)
Query: 286 KLSGHKSEVCGLKWSYD-NRELASGGNDNRLFVWNQHSTQPVLK-------YCEHTAAVK 337
+L GH+ E GL W+ + N L S +D+ + +W+ ++T + + HTA V+
Sbjct: 176 RLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVE 235
Query: 338 AIAWSPHLHGLLASGGGTADRCIRFWNTTTN 368
+AW HL G D+ + W+T N
Sbjct: 236 DVAW--HLLHESLFGSVADDQKLMIWDTRNN 264
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 39/186 (20%), Positives = 75/186 (40%), Gaps = 12/186 (6%)
Query: 223 LAVGTSHGKVQIWDASRCKRVRTMEGHRLRVXXXXXXXXXXXXXXRDKSILQRDIRAQED 282
+ G+S V++WD + + + T+ H V +D+SI D+ + D
Sbjct: 186 IITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTD 245
Query: 283 FVSK--LSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIA 340
+ L GH++ V + +D++ + S D + VWN + + V H + +
Sbjct: 246 ITLRRVLVGHRAAVNVV--DFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQ 303
Query: 341 WSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQ 400
+ L G++D IR W+ L ++ ++ + N +VS G
Sbjct: 304 YRDRL-----VVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDN-KRIVS--GAYD 355
Query: 401 NQIIVW 406
+I VW
Sbjct: 356 GKIKVW 361
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 46/100 (46%), Gaps = 3/100 (3%)
Query: 220 NTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVXXXXXXXXXXXXXXRDKSILQRDIRA 279
+ ++ + +++W+ S C+ VRT+ GH+ + D +I DI
Sbjct: 266 DKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIEC 325
Query: 280 QEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWN 319
+ L GH+ V ++ +DN+ + SG D ++ VW+
Sbjct: 326 GA-CLRVLEGHEELVRCIR--FDNKRIVSGAYDGKIKVWD 362
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 16/74 (21%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Query: 301 YDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCI 360
YD++++ SG DN + +W++++ + HT +V + + + G++D +
Sbjct: 141 YDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERV-----IITGSSDSTV 195
Query: 361 RFWNTTTNTHLSCM 374
R W+ T L+ +
Sbjct: 196 RVWDVNTGEMLNTL 209
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 60/151 (39%), Gaps = 11/151 (7%)
Query: 220 NTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVXXXXXXXXXXXXXXRDKSILQRDIRA 279
+ + G ++IWD + + R + GH V D ++ D+
Sbjct: 143 DQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNT 202
Query: 280 QEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHS-TQPVLK--YCEHTAAV 336
E ++ L H V L+ ++N + + D + VW+ S T L+ H AAV
Sbjct: 203 GE-MLNTLIHHCEAVLHLR--FNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAV 259
Query: 337 KAIAWSPHLHGLLASGGGTADRCIRFWNTTT 367
+ + + S G DR I+ WNT+T
Sbjct: 260 NVVDFDDKY---IVSASG--DRTIKVWNTST 285
Score = 32.0 bits (71), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 45/86 (52%), Gaps = 7/86 (8%)
Query: 287 LSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLH 346
L+GH V L+ YD R + +G +D+ + VW+ ++ + + H AV + ++ +
Sbjct: 169 LTGHTGSVLCLQ--YDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN---N 223
Query: 347 GLLASGGGTADRCIRFWNTTTNTHLS 372
G++ + + DR I W+ + T ++
Sbjct: 224 GMMVT--CSKDRSIAVWDMASPTDIT 247
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/158 (18%), Positives = 63/158 (39%), Gaps = 13/158 (8%)
Query: 170 LNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSH 229
+N+VD+ +++ + +WN + + + + G + + + R+ + G+S
Sbjct: 259 VNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLN-GHKRGIACLQY--RDRLVVSGSSD 315
Query: 230 GKVQIWDASRCKRVRTMEGHRLRVXXXXXXXXXXXXXXRDKSILQRDIRAQED------- 282
+++WD +R +EGH V D I D+ A D
Sbjct: 316 NTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGT 375
Query: 283 -FVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWN 319
+ L H V L+ +D ++ S +D+ + +W+
Sbjct: 376 LCLRTLVEHSGRVFRLQ--FDEFQIVSSSHDDTILIWD 411
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 17/117 (14%)
Query: 269 DKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRE-LASGGNDNRLFVWN------QH 321
DK++ D+R + + HK E+ ++WS N LAS G D RL VW+ +
Sbjct: 301 DKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQ 360
Query: 322 STQ------PVLKYCE--HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTH 370
ST+ P L + HTA + +W+P+ ++ S + D ++ W N +
Sbjct: 361 STEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICS--VSEDNIMQVWQMAENVY 415
Score = 35.4 bits (80), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 10/91 (10%)
Query: 286 KLSGHKSEVCGLKWSYD-NRELASGGNDNRLFVWNQHSTQPVLK-------YCEHTAAVK 337
+L GH+ E GL W+ + N L S +D+ + +W+ ++T + + HTA V+
Sbjct: 178 RLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVE 237
Query: 338 AIAWSPHLHGLLASGGGTADRCIRFWNTTTN 368
+AW HL G D+ + W+T N
Sbjct: 238 DVAW--HLLHESLFGSVADDQKLMIWDTRNN 266
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 17/117 (14%)
Query: 269 DKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRE-LASGGNDNRLFVWN------QH 321
DK++ D+R + + HK E+ ++WS N LAS G D RL VW+ +
Sbjct: 303 DKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQ 362
Query: 322 STQ------PVLKYCE--HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTH 370
ST+ P L + HTA + +W+P+ ++ S + D ++ W N +
Sbjct: 363 STEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICS--VSEDNIMQVWQMAENVY 417
Score = 35.4 bits (80), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 10/91 (10%)
Query: 286 KLSGHKSEVCGLKWSYD-NRELASGGNDNRLFVWNQHSTQPVLK-------YCEHTAAVK 337
+L GH+ E GL W+ + N L S +D+ + +W+ ++T + + HTA V+
Sbjct: 180 RLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVE 239
Query: 338 AIAWSPHLHGLLASGGGTADRCIRFWNTTTN 368
+AW HL G D+ + W+T N
Sbjct: 240 DVAW--HLLHESLFGSVADDQKLMIWDTRNN 268
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 68/161 (42%), Gaps = 21/161 (13%)
Query: 218 NRNTHLAVGTSH-GKVQIWDASRCKRVRTM---EGHRLRVXXXXXXXXXXXXXXRDKSIL 273
NR+ L V +S+ G +IWD + + ++T+ + + D ++
Sbjct: 161 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLK 220
Query: 274 QRDIRAQEDFVSKLSGHKSE---------VCGLKWSYDNRELASGGNDNRLFVWNQHSTQ 324
D ++ + +GHK+E V G KW + SG DN +++WN + +
Sbjct: 221 LWD-YSKGKCLKTYTGHKNEKYCIFANFSVTGGKW------IVSGSEDNMVYIWNLQTKE 273
Query: 325 PVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNT 365
V K HT V + A P ++AS D+ I+ W +
Sbjct: 274 IVQKLQGHTDVVISTACHP-TENIIASAALENDKTIKLWKS 313
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
Query: 283 FVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWS 342
F +SGHK + + WS D+ L S +D L +W+ S + + H+ V ++
Sbjct: 60 FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN 119
Query: 343 PHLHGLLASGGGTADRCIRFWNTTTNTHLSCM 374
P + +++ G+ D +R W+ T L +
Sbjct: 120 PQSNLIVS---GSFDESVRIWDVKTGMCLKTL 148
Score = 36.2 bits (82), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 40/182 (21%), Positives = 73/182 (40%), Gaps = 14/182 (7%)
Query: 189 VYLWNACSSKVTKLCD---LGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRT 245
+ +W A K K LGI D V W++ + L + ++IWD S K ++T
Sbjct: 50 IKIWGAYDGKFEKTISGHKLGISD----VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT 105
Query: 246 MEGHRLRVXXXXX--XXXXXXXXXRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDN 303
++GH V D+S+ D++ + L H V + ++ D
Sbjct: 106 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGM-CLKTLPAHSDPVSAVHFNRDG 164
Query: 304 RELASGGNDNRLFVWNQHSTQPVLKYC-EHTAAVKAIAWSPHLHGLLASGGGTADRCIRF 362
+ S D +W+ S Q + + V + +SP+ +LA+ T D ++
Sbjct: 165 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA---TLDNTLKL 221
Query: 363 WN 364
W+
Sbjct: 222 WD 223
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 47/104 (45%), Gaps = 6/104 (5%)
Query: 287 LSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLH 346
L+GH V +K+S + LAS D + +W + + H + +AWS +
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 347 GLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVN 390
L+++ + D+ ++ W+ ++ C+ T N V+ N N
Sbjct: 82 LLVSA---SDDKTLKIWDVSSG---KCLKTLKGHSNYVFCCNFN 119
Score = 31.6 bits (70), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 33/167 (19%), Positives = 71/167 (42%), Gaps = 6/167 (3%)
Query: 210 SVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVXXXX--XXXXXXXXXX 267
+V SV ++ LA ++ ++IW A K +T+ GH+L +
Sbjct: 28 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS 87
Query: 268 RDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVL 327
DK++ D+ + + + L GH + V ++ + + SG D + +W+ + +
Sbjct: 88 DDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLK 146
Query: 328 KYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCM 374
H+ V A+ ++ +++S + D R W+T + L +
Sbjct: 147 TLPAHSDPVSAVHFNRDGSLIVSS---SYDGLCRIWDTASGQCLKTL 190
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 68/161 (42%), Gaps = 21/161 (13%)
Query: 218 NRNTHLAVGTSH-GKVQIWDASRCKRVRTM---EGHRLRVXXXXXXXXXXXXXXRDKSIL 273
NR+ L V +S+ G +IWD + + ++T+ + + D ++
Sbjct: 164 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLK 223
Query: 274 QRDIRAQEDFVSKLSGHKSE---------VCGLKWSYDNRELASGGNDNRLFVWNQHSTQ 324
D ++ + +GHK+E V G KW + SG DN +++WN + +
Sbjct: 224 LWD-YSKGKCLKTYTGHKNEKYCIFANFSVTGGKW------IVSGSEDNLVYIWNLQTKE 276
Query: 325 PVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNT 365
V K HT V + A P ++AS D+ I+ W +
Sbjct: 277 IVQKLQGHTDVVISTACHP-TENIIASAALENDKTIKLWKS 316
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
Query: 283 FVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWS 342
F +SGHK + + WS D+ L S +D L +W+ S + + H+ V ++
Sbjct: 63 FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN 122
Query: 343 PHLHGLLASGGGTADRCIRFWNTTTNTHLSCM 374
P + +++ G+ D +R W+ T L +
Sbjct: 123 PQSNLIVS---GSFDESVRIWDVKTGKCLKTL 151
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 40/182 (21%), Positives = 74/182 (40%), Gaps = 14/182 (7%)
Query: 189 VYLWNACSSKVTKLCD---LGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRT 245
+ +W A K K LGI D V W++ + L + ++IWD S K ++T
Sbjct: 53 IKIWGAYDGKFEKTISGHKLGISD----VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT 108
Query: 246 MEGHRLRVXXXXX--XXXXXXXXXRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDN 303
++GH V D+S+ D++ + + L H V + ++ D
Sbjct: 109 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK-CLKTLPAHSDPVSAVHFNRDG 167
Query: 304 RELASGGNDNRLFVWNQHSTQPVLKYC-EHTAAVKAIAWSPHLHGLLASGGGTADRCIRF 362
+ S D +W+ S Q + + V + +SP+ +LA+ T D ++
Sbjct: 168 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA---TLDNTLKL 224
Query: 363 WN 364
W+
Sbjct: 225 WD 226
Score = 35.0 bits (79), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 47/104 (45%), Gaps = 6/104 (5%)
Query: 287 LSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLH 346
L+GH V +K+S + LAS D + +W + + H + +AWS +
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 84
Query: 347 GLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVN 390
L+++ + D+ ++ W+ ++ C+ T N V+ N N
Sbjct: 85 LLVSA---SDDKTLKIWDVSSG---KCLKTLKGHSNYVFCCNFN 122
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 33/167 (19%), Positives = 72/167 (43%), Gaps = 6/167 (3%)
Query: 210 SVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVXXXX--XXXXXXXXXX 267
+V SV ++ LA ++ ++IW A K +T+ GH+L +
Sbjct: 31 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS 90
Query: 268 RDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVL 327
DK++ D+ + + + L GH + V ++ + + SG D + +W+ + + +
Sbjct: 91 DDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK 149
Query: 328 KYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCM 374
H+ V A+ ++ +++S + D R W+T + L +
Sbjct: 150 TLPAHSDPVSAVHFNRDGSLIVSS---SYDGLCRIWDTASGQCLKTL 193
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 68/161 (42%), Gaps = 21/161 (13%)
Query: 218 NRNTHLAVGTSH-GKVQIWDASRCKRVRTM---EGHRLRVXXXXXXXXXXXXXXRDKSIL 273
NR+ L V +S+ G +IWD + + ++T+ + + D ++
Sbjct: 180 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLK 239
Query: 274 QRDIRAQEDFVSKLSGHKSE---------VCGLKWSYDNRELASGGNDNRLFVWNQHSTQ 324
D ++ + +GHK+E V G KW + SG DN +++WN + +
Sbjct: 240 LWD-YSKGKCLKTYTGHKNEKYCIFANFSVTGGKW------IVSGSEDNLVYIWNLQTKE 292
Query: 325 PVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNT 365
V K HT V + A P ++AS D+ I+ W +
Sbjct: 293 IVQKLQGHTDVVISTACHP-TENIIASAALENDKTIKLWKS 332
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
Query: 283 FVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWS 342
F +SGHK + + WS D+ L S +D L +W+ S + + H+ V ++
Sbjct: 79 FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN 138
Query: 343 PHLHGLLASGGGTADRCIRFWNTTTNTHLSCM 374
P + +++ G+ D +R W+ T L +
Sbjct: 139 PQSNLIVS---GSFDESVRIWDVKTGKCLKTL 167
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 40/182 (21%), Positives = 74/182 (40%), Gaps = 14/182 (7%)
Query: 189 VYLWNACSSKVTKLCD---LGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRT 245
+ +W A K K LGI D V W++ + L + ++IWD S K ++T
Sbjct: 69 IKIWGAYDGKFEKTISGHKLGISD----VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT 124
Query: 246 MEGHRLRVXXXXX--XXXXXXXXXRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDN 303
++GH V D+S+ D++ + + L H V + ++ D
Sbjct: 125 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK-CLKTLPAHSDPVSAVHFNRDG 183
Query: 304 RELASGGNDNRLFVWNQHSTQPVLKYC-EHTAAVKAIAWSPHLHGLLASGGGTADRCIRF 362
+ S D +W+ S Q + + V + +SP+ +LA+ T D ++
Sbjct: 184 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA---TLDNTLKL 240
Query: 363 WN 364
W+
Sbjct: 241 WD 242
Score = 35.0 bits (79), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 47/104 (45%), Gaps = 6/104 (5%)
Query: 287 LSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLH 346
L+GH V +K+S + LAS D + +W + + H + +AWS +
Sbjct: 41 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 100
Query: 347 GLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVN 390
L+++ + D+ ++ W+ ++ C+ T N V+ N N
Sbjct: 101 LLVSA---SDDKTLKIWDVSSG---KCLKTLKGHSNYVFCCNFN 138
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 34/171 (19%), Positives = 73/171 (42%), Gaps = 6/171 (3%)
Query: 206 GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVXXXX--XXXXXX 263
G +V SV ++ LA ++ ++IW A K +T+ GH+L +
Sbjct: 43 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 102
Query: 264 XXXXRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHST 323
DK++ D+ + + + L GH + V ++ + + SG D + +W+ +
Sbjct: 103 VSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 161
Query: 324 QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCM 374
+ + H+ V A+ ++ +++S + D R W+T + L +
Sbjct: 162 KCLKTLPAHSDPVSAVHFNRDGSLIVSS---SYDGLCRIWDTASGQCLKTL 209
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 68/161 (42%), Gaps = 21/161 (13%)
Query: 218 NRNTHLAVGTSH-GKVQIWDASRCKRVRTM---EGHRLRVXXXXXXXXXXXXXXRDKSIL 273
NR+ L V +S+ G +IWD + + ++T+ + + D ++
Sbjct: 182 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLK 241
Query: 274 QRDIRAQEDFVSKLSGHKSE---------VCGLKWSYDNRELASGGNDNRLFVWNQHSTQ 324
D ++ + +GHK+E V G KW + SG DN +++WN + +
Sbjct: 242 LWD-YSKGKCLKTYTGHKNEKYCIFANFSVTGGKW------IVSGSEDNLVYIWNLQTKE 294
Query: 325 PVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNT 365
V K HT V + A P ++AS D+ I+ W +
Sbjct: 295 IVQKLQGHTDVVISTACHP-TENIIASAALENDKTIKLWKS 334
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
Query: 283 FVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWS 342
F +SGHK + + WS D+ L S +D L +W+ S + + H+ V ++
Sbjct: 81 FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN 140
Query: 343 PHLHGLLASGGGTADRCIRFWNTTTNTHLSCM 374
P + +++ G+ D +R W+ T L +
Sbjct: 141 PQSNLIVS---GSFDESVRIWDVKTGKCLKTL 169
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 40/182 (21%), Positives = 74/182 (40%), Gaps = 14/182 (7%)
Query: 189 VYLWNACSSKVTKLCD---LGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRT 245
+ +W A K K LGI D V W++ + L + ++IWD S K ++T
Sbjct: 71 IKIWGAYDGKFEKTISGHKLGISD----VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT 126
Query: 246 MEGHRLRVXXXXX--XXXXXXXXXRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDN 303
++GH V D+S+ D++ + + L H V + ++ D
Sbjct: 127 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK-CLKTLPAHSDPVSAVHFNRDG 185
Query: 304 RELASGGNDNRLFVWNQHSTQPVLKYC-EHTAAVKAIAWSPHLHGLLASGGGTADRCIRF 362
+ S D +W+ S Q + + V + +SP+ +LA+ T D ++
Sbjct: 186 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA---TLDNTLKL 242
Query: 363 WN 364
W+
Sbjct: 243 WD 244
Score = 35.0 bits (79), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 47/104 (45%), Gaps = 6/104 (5%)
Query: 287 LSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLH 346
L+GH V +K+S + LAS D + +W + + H + +AWS +
Sbjct: 43 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 102
Query: 347 GLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVN 390
L+++ + D+ ++ W+ ++ C+ T N V+ N N
Sbjct: 103 LLVSA---SDDKTLKIWDVSSG---KCLKTLKGHSNYVFCCNFN 140
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 34/171 (19%), Positives = 73/171 (42%), Gaps = 6/171 (3%)
Query: 206 GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVXXXX--XXXXXX 263
G +V SV ++ LA ++ ++IW A K +T+ GH+L +
Sbjct: 45 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 104
Query: 264 XXXXRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHST 323
DK++ D+ + + + L GH + V ++ + + SG D + +W+ +
Sbjct: 105 VSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 163
Query: 324 QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCM 374
+ + H+ V A+ ++ +++S + D R W+T + L +
Sbjct: 164 KCLKTLPAHSDPVSAVHFNRDGSLIVSS---SYDGLCRIWDTASGQCLKTL 211
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 68/161 (42%), Gaps = 21/161 (13%)
Query: 218 NRNTHLAVGTSH-GKVQIWDASRCKRVRTM---EGHRLRVXXXXXXXXXXXXXXRDKSIL 273
NR+ L V +S+ G +IWD + + ++T+ + + D ++
Sbjct: 164 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLK 223
Query: 274 QRDIRAQEDFVSKLSGHKSE---------VCGLKWSYDNRELASGGNDNRLFVWNQHSTQ 324
D ++ + +GHK+E V G KW + SG DN +++WN + +
Sbjct: 224 LWD-YSKGKCLKTYTGHKNEKYCIFANFSVTGGKW------IVSGSEDNLVYIWNLQTKE 276
Query: 325 PVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNT 365
V K HT V + A P ++AS D+ I+ W +
Sbjct: 277 IVQKLQGHTDVVISTACHP-TENIIASAALENDKTIKLWKS 316
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
Query: 283 FVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWS 342
F +SGHK + + WS D+ L S +D L +W+ S + + H+ V ++
Sbjct: 63 FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN 122
Query: 343 PHLHGLLASGGGTADRCIRFWNTTTNTHLSCM 374
P + +++ G+ D +R W+ T L +
Sbjct: 123 PQSNLIVS---GSFDESVRIWDVKTGKCLKTL 151
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 40/182 (21%), Positives = 74/182 (40%), Gaps = 14/182 (7%)
Query: 189 VYLWNACSSKVTKLCD---LGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRT 245
+ +W A K K LGI D V W++ + L + ++IWD S K ++T
Sbjct: 53 IKIWGAYDGKFEKTISGHKLGISD----VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT 108
Query: 246 MEGHRLRVXXXXX--XXXXXXXXXRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDN 303
++GH V D+S+ D++ + + L H V + ++ D
Sbjct: 109 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK-CLKTLPAHSDPVSAVHFNRDG 167
Query: 304 RELASGGNDNRLFVWNQHSTQPVLKYC-EHTAAVKAIAWSPHLHGLLASGGGTADRCIRF 362
+ S D +W+ S Q + + V + +SP+ +LA+ T D ++
Sbjct: 168 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA---TLDNTLKL 224
Query: 363 WN 364
W+
Sbjct: 225 WD 226
Score = 34.7 bits (78), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 47/104 (45%), Gaps = 6/104 (5%)
Query: 287 LSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLH 346
L+GH V +K+S + LAS D + +W + + H + +AWS +
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 84
Query: 347 GLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVN 390
L+++ + D+ ++ W+ ++ C+ T N V+ N N
Sbjct: 85 LLVSA---SDDKTLKIWDVSSG---KCLKTLKGHSNYVFCCNFN 122
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 33/167 (19%), Positives = 72/167 (43%), Gaps = 6/167 (3%)
Query: 210 SVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVXXXX--XXXXXXXXXX 267
+V SV ++ LA ++ ++IW A K +T+ GH+L +
Sbjct: 31 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS 90
Query: 268 RDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVL 327
DK++ D+ + + + L GH + V ++ + + SG D + +W+ + + +
Sbjct: 91 DDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK 149
Query: 328 KYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCM 374
H+ V A+ ++ +++S + D R W+T + L +
Sbjct: 150 TLPAHSDPVSAVHFNRDGSLIVSS---SYDGLCRIWDTASGQCLKTL 193
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 68/161 (42%), Gaps = 21/161 (13%)
Query: 218 NRNTHLAVGTSH-GKVQIWDASRCKRVRTM---EGHRLRVXXXXXXXXXXXXXXRDKSIL 273
NR+ L V +S+ G +IWD + + ++T+ + + D ++
Sbjct: 154 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLK 213
Query: 274 QRDIRAQEDFVSKLSGHKSE---------VCGLKWSYDNRELASGGNDNRLFVWNQHSTQ 324
D ++ + +GHK+E V G KW + SG DN +++WN + +
Sbjct: 214 LWD-YSKGKCLKTYTGHKNEKYCIFANFSVTGGKW------IVSGSEDNLVYIWNLQTKE 266
Query: 325 PVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNT 365
V K HT V + A P ++AS D+ I+ W +
Sbjct: 267 IVQKLQGHTDVVISTACHP-TENIIASAALENDKTIKLWKS 306
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
Query: 283 FVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWS 342
F +SGHK + + WS D+ L S +D L +W+ S + + H+ V ++
Sbjct: 53 FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN 112
Query: 343 PHLHGLLASGGGTADRCIRFWNTTTNTHLSCM 374
P + +++ G+ D +R W+ T L +
Sbjct: 113 PQSNLIVS---GSFDESVRIWDVKTGKCLKTL 141
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 40/182 (21%), Positives = 74/182 (40%), Gaps = 14/182 (7%)
Query: 189 VYLWNACSSKVTKLCD---LGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRT 245
+ +W A K K LGI D V W++ + L + ++IWD S K ++T
Sbjct: 43 IKIWGAYDGKFEKTISGHKLGISD----VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT 98
Query: 246 MEGHRLRVXXXXX--XXXXXXXXXRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDN 303
++GH V D+S+ D++ + + L H V + ++ D
Sbjct: 99 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK-CLKTLPAHSDPVSAVHFNRDG 157
Query: 304 RELASGGNDNRLFVWNQHSTQPVLKYC-EHTAAVKAIAWSPHLHGLLASGGGTADRCIRF 362
+ S D +W+ S Q + + V + +SP+ +LA+ T D ++
Sbjct: 158 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA---TLDNTLKL 214
Query: 363 WN 364
W+
Sbjct: 215 WD 216
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 47/104 (45%), Gaps = 6/104 (5%)
Query: 287 LSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLH 346
L+GH V +K+S + LAS D + +W + + H + +AWS +
Sbjct: 15 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 74
Query: 347 GLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVN 390
L+++ + D+ ++ W+ ++ C+ T N V+ N N
Sbjct: 75 LLVSA---SDDKTLKIWDVSSG---KCLKTLKGHSNYVFCCNFN 112
Score = 32.3 bits (72), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 33/167 (19%), Positives = 72/167 (43%), Gaps = 6/167 (3%)
Query: 210 SVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVXXXX--XXXXXXXXXX 267
+V SV ++ LA ++ ++IW A K +T+ GH+L +
Sbjct: 21 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS 80
Query: 268 RDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVL 327
DK++ D+ + + + L GH + V ++ + + SG D + +W+ + + +
Sbjct: 81 DDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK 139
Query: 328 KYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCM 374
H+ V A+ ++ +++S + D R W+T + L +
Sbjct: 140 TLPAHSDPVSAVHFNRDGSLIVSS---SYDGLCRIWDTASGQCLKTL 183
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 286 KLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHL 345
++ H+ EV +S D+R +A+ D ++ +WN + + V Y EH+ V ++
Sbjct: 658 EIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSS 717
Query: 346 HGLLASGGGTADRCIRFWN 364
H LL + G++D ++ W+
Sbjct: 718 HHLLLA-TGSSDCFLKLWD 735
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 15/91 (16%)
Query: 286 KLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCE---------HTAAV 336
+L GH V +S D+ LA+G ++ + +WN S +L C H V
Sbjct: 1128 ELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNV-SNGELLHLCAPLSEEGAATHGGWV 1186
Query: 337 KAIAWSPHLHGLLASGGGTADRCIRFWNTTT 367
+ +SP L+++GG I++WN T
Sbjct: 1187 TDLCFSPDGKMLISAGGY-----IKWWNVVT 1212
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 51/128 (39%), Gaps = 16/128 (12%)
Query: 280 QEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAI 339
++DFV H+ V S+D + +S D +W+ P+ + H V+
Sbjct: 1084 EKDFVC----HQGTVLSCDISHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCS 1139
Query: 340 AWSPHLHGLLASGGGTADRCIRFWNTTTNTHL---------SCMDTGSQVCNLVWSKNVN 390
A+S LLA+G + IR WN + L G V +L +S +
Sbjct: 1140 AFSVD-STLLATGDDNGE--IRIWNVSNGELLHLCAPLSEEGAATHGGWVTDLCFSPDGK 1196
Query: 391 ELVSTHGY 398
L+S GY
Sbjct: 1197 MLISAGGY 1204
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 7/114 (6%)
Query: 268 RDKSI----LQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHST 323
RDKSI L +D +A +L+GH V + S D + SG D L +W+ +
Sbjct: 403 RDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAG 462
Query: 324 QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTG 377
++ HT V ++A+S ++++ + DR I+ WNT + + G
Sbjct: 463 VSTRRFVGHTKDVLSVAFSLDNRQIVSA---SRDRTIKLWNTLGECKYTISEGG 513
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 43/195 (22%), Positives = 77/195 (39%), Gaps = 12/195 (6%)
Query: 226 GTSHGKVQIWDASRCKRVRTMEGHRLRVXXXXXXX--XXXXXXXRDKSILQRDIRAQEDF 283
G+ G++++WD + R GH V RD++I + + +
Sbjct: 448 GSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKY 507
Query: 284 V--SKLSGHKSEVCGLKWSYDNRE--LASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAI 339
GH+ V +++S + + + S D + VWN + + HT V +
Sbjct: 508 TISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTV 567
Query: 340 AWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYS 399
A SP L ASGG D + W+ L ++ S + L +S N L + +
Sbjct: 568 AVSPD-GSLCASGG--KDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRYWLCAA---T 621
Query: 400 QNQIIVWRYPTMSKV 414
++ I +W + S V
Sbjct: 622 EHGIKIWDLESKSIV 636
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 68/161 (42%), Gaps = 21/161 (13%)
Query: 218 NRNTHLAVGTSH-GKVQIWDASRCKRVRTM---EGHRLRVXXXXXXXXXXXXXXRDKSIL 273
NR+ L V +S+ G +IWD + + ++T+ + + D ++
Sbjct: 157 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLK 216
Query: 274 QRDIRAQEDFVSKLSGHKSE---------VCGLKWSYDNRELASGGNDNRLFVWNQHSTQ 324
D ++ + +GHK+E V G KW + SG DN +++WN + +
Sbjct: 217 LWD-YSKGKCLKTYTGHKNEKYCIFANFSVTGGKW------IVSGSEDNLVYIWNLQTKE 269
Query: 325 PVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNT 365
V K HT V + A P ++AS D+ I+ W +
Sbjct: 270 IVQKLQGHTDVVISTACHP-TENIIASAALENDKTIKLWKS 309
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
Query: 283 FVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWS 342
F +SGHK + + WS D+ L S +D L +W+ S + + H+ V ++
Sbjct: 56 FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN 115
Query: 343 PHLHGLLASGGGTADRCIRFWNTTTNTHLSCM 374
P + +++ G+ D +R W+ T L +
Sbjct: 116 PQSNLIVS---GSFDESVRIWDVKTGKCLKTL 144
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 40/182 (21%), Positives = 74/182 (40%), Gaps = 14/182 (7%)
Query: 189 VYLWNACSSKVTKLCD---LGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRT 245
+ +W A K K LGI D V W++ + L + ++IWD S K ++T
Sbjct: 46 IKIWGAYDGKFEKTISGHKLGISD----VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT 101
Query: 246 MEGHRLRVXXXXX--XXXXXXXXXRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDN 303
++GH V D+S+ D++ + + L H V + ++ D
Sbjct: 102 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK-CLKTLPAHSDPVSAVHFNRDG 160
Query: 304 RELASGGNDNRLFVWNQHSTQPVLKYC-EHTAAVKAIAWSPHLHGLLASGGGTADRCIRF 362
+ S D +W+ S Q + + V + +SP+ +LA+ T D ++
Sbjct: 161 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA---TLDNTLKL 217
Query: 363 WN 364
W+
Sbjct: 218 WD 219
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 47/104 (45%), Gaps = 6/104 (5%)
Query: 287 LSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLH 346
L+GH V +K+S + LAS D + +W + + H + +AWS +
Sbjct: 18 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 77
Query: 347 GLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVN 390
L+++ + D+ ++ W+ ++ C+ T N V+ N N
Sbjct: 78 LLVSA---SDDKTLKIWDVSSG---KCLKTLKGHSNYVFCCNFN 115
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 33/167 (19%), Positives = 72/167 (43%), Gaps = 6/167 (3%)
Query: 210 SVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVXXXX--XXXXXXXXXX 267
+V SV ++ LA ++ ++IW A K +T+ GH+L +
Sbjct: 24 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS 83
Query: 268 RDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVL 327
DK++ D+ + + + L GH + V ++ + + SG D + +W+ + + +
Sbjct: 84 DDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK 142
Query: 328 KYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCM 374
H+ V A+ ++ +++S + D R W+T + L +
Sbjct: 143 TLPAHSDPVSAVHFNRDGSLIVSS---SYDGLCRIWDTASGQCLKTL 186
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 68/161 (42%), Gaps = 21/161 (13%)
Query: 218 NRNTHLAVGTSH-GKVQIWDASRCKRVRTM---EGHRLRVXXXXXXXXXXXXXXRDKSIL 273
NR+ L V +S+ G +IWD + + ++T+ + + D ++
Sbjct: 175 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLK 234
Query: 274 QRDIRAQEDFVSKLSGHKSE---------VCGLKWSYDNRELASGGNDNRLFVWNQHSTQ 324
D ++ + +GHK+E V G KW + SG DN +++WN + +
Sbjct: 235 LWD-YSKGKCLKTYTGHKNEKYCIFANFSVTGGKW------IVSGSEDNLVYIWNLQTKE 287
Query: 325 PVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNT 365
V K HT V + A P ++AS D+ I+ W +
Sbjct: 288 IVQKLQGHTDVVISTACHP-TENIIASAALENDKTIKLWKS 327
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
Query: 283 FVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWS 342
F +SGHK + + WS D+ L S +D L +W+ S + + H+ V ++
Sbjct: 74 FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN 133
Query: 343 PHLHGLLASGGGTADRCIRFWNTTTNTHLSCM 374
P + +++ G+ D +R W+ T L +
Sbjct: 134 PQSNLIVS---GSFDESVRIWDVKTGKCLKTL 162
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 40/182 (21%), Positives = 74/182 (40%), Gaps = 14/182 (7%)
Query: 189 VYLWNACSSKVTKLCD---LGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRT 245
+ +W A K K LGI D V W++ + L + ++IWD S K ++T
Sbjct: 64 IKIWGAYDGKFEKTISGHKLGISD----VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT 119
Query: 246 MEGHRLRVXXXXX--XXXXXXXXXRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDN 303
++GH V D+S+ D++ + + L H V + ++ D
Sbjct: 120 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK-CLKTLPAHSDPVSAVHFNRDG 178
Query: 304 RELASGGNDNRLFVWNQHSTQPVLKYC-EHTAAVKAIAWSPHLHGLLASGGGTADRCIRF 362
+ S D +W+ S Q + + V + +SP+ +LA+ T D ++
Sbjct: 179 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA---TLDNTLKL 235
Query: 363 WN 364
W+
Sbjct: 236 WD 237
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 47/104 (45%), Gaps = 6/104 (5%)
Query: 287 LSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLH 346
L+GH V +K+S + LAS D + +W + + H + +AWS +
Sbjct: 36 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 95
Query: 347 GLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVN 390
L+++ + D+ ++ W+ ++ C+ T N V+ N N
Sbjct: 96 LLVSA---SDDKTLKIWDVSSG---KCLKTLKGHSNYVFCCNFN 133
Score = 32.3 bits (72), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 34/171 (19%), Positives = 73/171 (42%), Gaps = 6/171 (3%)
Query: 206 GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVXXXX--XXXXXX 263
G +V SV ++ LA ++ ++IW A K +T+ GH+L +
Sbjct: 38 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 97
Query: 264 XXXXRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHST 323
DK++ D+ + + + L GH + V ++ + + SG D + +W+ +
Sbjct: 98 VSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 156
Query: 324 QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCM 374
+ + H+ V A+ ++ +++S + D R W+T + L +
Sbjct: 157 KCLKTLPAHSDPVSAVHFNRDGSLIVSS---SYDGLCRIWDTASGQCLKTL 204
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 68/161 (42%), Gaps = 21/161 (13%)
Query: 218 NRNTHLAVGTSH-GKVQIWDASRCKRVRTM---EGHRLRVXXXXXXXXXXXXXXRDKSIL 273
NR+ L V +S+ G +IWD + + ++T+ + + D ++
Sbjct: 159 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLK 218
Query: 274 QRDIRAQEDFVSKLSGHKSE---------VCGLKWSYDNRELASGGNDNRLFVWNQHSTQ 324
D ++ + +GHK+E V G KW + SG DN +++WN + +
Sbjct: 219 LWD-YSKGKCLKTYTGHKNEKYCIFANFSVTGGKW------IVSGSEDNLVYIWNLQTKE 271
Query: 325 PVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNT 365
V K HT V + A P ++AS D+ I+ W +
Sbjct: 272 IVQKLQGHTDVVISTACHP-TENIIASAALENDKTIKLWKS 311
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
Query: 283 FVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWS 342
F +SGHK + + WS D+ L S +D L +W+ S + + H+ V ++
Sbjct: 58 FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN 117
Query: 343 PHLHGLLASGGGTADRCIRFWNTTTNTHLSCM 374
P + +++ G+ D +R W+ T L +
Sbjct: 118 PQSNLIVS---GSFDESVRIWDVKTGKCLKTL 146
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 40/182 (21%), Positives = 74/182 (40%), Gaps = 14/182 (7%)
Query: 189 VYLWNACSSKVTKLCD---LGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRT 245
+ +W A K K LGI D V W++ + L + ++IWD S K ++T
Sbjct: 48 IKIWGAYDGKFEKTISGHKLGISD----VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT 103
Query: 246 MEGHRLRVXXXXX--XXXXXXXXXRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDN 303
++GH V D+S+ D++ + + L H V + ++ D
Sbjct: 104 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK-CLKTLPAHSDPVSAVHFNRDG 162
Query: 304 RELASGGNDNRLFVWNQHSTQPVLKYC-EHTAAVKAIAWSPHLHGLLASGGGTADRCIRF 362
+ S D +W+ S Q + + V + +SP+ +LA+ T D ++
Sbjct: 163 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA---TLDNTLKL 219
Query: 363 WN 364
W+
Sbjct: 220 WD 221
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 47/104 (45%), Gaps = 6/104 (5%)
Query: 287 LSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLH 346
L+GH V +K+S + LAS D + +W + + H + +AWS +
Sbjct: 20 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 79
Query: 347 GLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVN 390
L+++ + D+ ++ W+ ++ C+ T N V+ N N
Sbjct: 80 LLVSA---SDDKTLKIWDVSSG---KCLKTLKGHSNYVFCCNFN 117
Score = 32.3 bits (72), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 33/167 (19%), Positives = 72/167 (43%), Gaps = 6/167 (3%)
Query: 210 SVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVXXXX--XXXXXXXXXX 267
+V SV ++ LA ++ ++IW A K +T+ GH+L +
Sbjct: 26 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS 85
Query: 268 RDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVL 327
DK++ D+ + + + L GH + V ++ + + SG D + +W+ + + +
Sbjct: 86 DDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK 144
Query: 328 KYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCM 374
H+ V A+ ++ +++S + D R W+T + L +
Sbjct: 145 TLPAHSDPVSAVHFNRDGSLIVSS---SYDGLCRIWDTASGQCLKTL 188
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 68/161 (42%), Gaps = 21/161 (13%)
Query: 218 NRNTHLAVGTSH-GKVQIWDASRCKRVRTM---EGHRLRVXXXXXXXXXXXXXXRDKSIL 273
NR+ L V +S+ G +IWD + + ++T+ + + D ++
Sbjct: 158 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLK 217
Query: 274 QRDIRAQEDFVSKLSGHKSE---------VCGLKWSYDNRELASGGNDNRLFVWNQHSTQ 324
D ++ + +GHK+E V G KW + SG DN +++WN + +
Sbjct: 218 LWD-YSKGKCLKTYTGHKNEKYCIFANFSVTGGKW------IVSGSEDNLVYIWNLQTKE 270
Query: 325 PVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNT 365
V K HT V + A P ++AS D+ I+ W +
Sbjct: 271 IVQKLQGHTDVVISTACHP-TENIIASAALENDKTIKLWKS 310
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
Query: 283 FVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWS 342
F +SGHK + + WS D+ L S +D L +W+ S + + H+ V ++
Sbjct: 57 FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN 116
Query: 343 PHLHGLLASGGGTADRCIRFWNTTTNTHLSCM 374
P + +++ G+ D +R W+ T L +
Sbjct: 117 PQSNLIVS---GSFDESVRIWDVKTGKCLKTL 145
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 40/182 (21%), Positives = 74/182 (40%), Gaps = 14/182 (7%)
Query: 189 VYLWNACSSKVTKLCD---LGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRT 245
+ +W A K K LGI D V W++ + L + ++IWD S K ++T
Sbjct: 47 IKIWGAYDGKFEKTISGHKLGISD----VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT 102
Query: 246 MEGHRLRVXXXXX--XXXXXXXXXRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDN 303
++GH V D+S+ D++ + + L H V + ++ D
Sbjct: 103 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK-CLKTLPAHSDPVSAVHFNRDG 161
Query: 304 RELASGGNDNRLFVWNQHSTQPVLKYC-EHTAAVKAIAWSPHLHGLLASGGGTADRCIRF 362
+ S D +W+ S Q + + V + +SP+ +LA+ T D ++
Sbjct: 162 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA---TLDNTLKL 218
Query: 363 WN 364
W+
Sbjct: 219 WD 220
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 47/104 (45%), Gaps = 6/104 (5%)
Query: 287 LSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLH 346
L+GH V +K+S + LAS D + +W + + H + +AWS +
Sbjct: 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 78
Query: 347 GLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVN 390
L+++ + D+ ++ W+ ++ C+ T N V+ N N
Sbjct: 79 LLVSA---SDDKTLKIWDVSSG---KCLKTLKGHSNYVFCCNFN 116
Score = 32.3 bits (72), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 33/167 (19%), Positives = 72/167 (43%), Gaps = 6/167 (3%)
Query: 210 SVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVXXXX--XXXXXXXXXX 267
+V SV ++ LA ++ ++IW A K +T+ GH+L +
Sbjct: 25 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS 84
Query: 268 RDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVL 327
DK++ D+ + + + L GH + V ++ + + SG D + +W+ + + +
Sbjct: 85 DDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK 143
Query: 328 KYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCM 374
H+ V A+ ++ +++S + D R W+T + L +
Sbjct: 144 TLPAHSDPVSAVHFNRDGSLIVSS---SYDGLCRIWDTASGQCLKTL 187
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 68/161 (42%), Gaps = 21/161 (13%)
Query: 218 NRNTHLAVGTSH-GKVQIWDASRCKRVRTM---EGHRLRVXXXXXXXXXXXXXXRDKSIL 273
NR+ L V +S+ G +IWD + + ++T+ + + D ++
Sbjct: 164 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLK 223
Query: 274 QRDIRAQEDFVSKLSGHKSE---------VCGLKWSYDNRELASGGNDNRLFVWNQHSTQ 324
D ++ + +GHK+E V G KW + SG DN +++WN + +
Sbjct: 224 LWD-YSKGKCLKTYTGHKNEKYCIFANFSVTGGKW------IVSGSEDNLVYIWNLQTKE 276
Query: 325 PVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNT 365
V K HT V + A P ++AS D+ I+ W +
Sbjct: 277 IVQKLQGHTDVVISTACHP-TENIIASAALENDKTIKLWKS 316
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
Query: 283 FVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWS 342
F +SGHK + + WS D+ L S +D L +W+ S + + H+ V ++
Sbjct: 63 FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN 122
Query: 343 PHLHGLLASGGGTADRCIRFWNTTTNTHLSCM 374
P + +++ G+ D +R W+ T L +
Sbjct: 123 PQSNLIVS---GSFDESVRIWDVKTGKCLKTL 151
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 40/182 (21%), Positives = 74/182 (40%), Gaps = 14/182 (7%)
Query: 189 VYLWNACSSKVTKLCD---LGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRT 245
+ +W A K K LGI D V W++ + L + ++IWD S K ++T
Sbjct: 53 IKIWGAYDGKFEKTISGHKLGISD----VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT 108
Query: 246 MEGHRLRVXXXXX--XXXXXXXXXRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDN 303
++GH V D+S+ D++ + + L H V + ++ D
Sbjct: 109 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK-CLKTLPAHSDPVSAVHFNRDG 167
Query: 304 RELASGGNDNRLFVWNQHSTQPVLKYC-EHTAAVKAIAWSPHLHGLLASGGGTADRCIRF 362
+ S D +W+ S Q + + V + +SP+ +LA+ T D ++
Sbjct: 168 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA---TLDNTLKL 224
Query: 363 WN 364
W+
Sbjct: 225 WD 226
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 47/104 (45%), Gaps = 6/104 (5%)
Query: 287 LSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLH 346
L+GH V +K+S + LAS D + +W + + H + +AWS +
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 84
Query: 347 GLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVN 390
L+++ + D+ ++ W+ ++ C+ T N V+ N N
Sbjct: 85 LLVSA---SDDKTLKIWDVSSG---KCLKTLKGHSNYVFCCNFN 122
Score = 32.3 bits (72), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 33/167 (19%), Positives = 72/167 (43%), Gaps = 6/167 (3%)
Query: 210 SVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVXXXX--XXXXXXXXXX 267
+V SV ++ LA ++ ++IW A K +T+ GH+L +
Sbjct: 31 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS 90
Query: 268 RDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVL 327
DK++ D+ + + + L GH + V ++ + + SG D + +W+ + + +
Sbjct: 91 DDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK 149
Query: 328 KYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCM 374
H+ V A+ ++ +++S + D R W+T + L +
Sbjct: 150 TLPAHSDPVSAVHFNRDGSLIVSS---SYDGLCRIWDTASGQCLKTL 193
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 68/161 (42%), Gaps = 21/161 (13%)
Query: 218 NRNTHLAVGTSH-GKVQIWDASRCKRVRTM---EGHRLRVXXXXXXXXXXXXXXRDKSIL 273
NR+ L V +S+ G +IWD + + ++T+ + + D ++
Sbjct: 158 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLK 217
Query: 274 QRDIRAQEDFVSKLSGHKSE---------VCGLKWSYDNRELASGGNDNRLFVWNQHSTQ 324
D ++ + +GHK+E V G KW + SG DN +++WN + +
Sbjct: 218 LWD-YSKGKCLKTYTGHKNEKYCIFANFSVTGGKW------IVSGSEDNLVYIWNLQTKE 270
Query: 325 PVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNT 365
V K HT V + A P ++AS D+ I+ W +
Sbjct: 271 IVQKLQGHTDVVISTACHP-TENIIASAALENDKTIKLWKS 310
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
Query: 283 FVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWS 342
F +SGHK + + WS D+ L S +D L +W+ S + + H+ V ++
Sbjct: 57 FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN 116
Query: 343 PHLHGLLASGGGTADRCIRFWNTTTNTHLSCM 374
P + +++ G+ D +R W+ T L +
Sbjct: 117 PQSNLIVS---GSFDESVRIWDVKTGKCLKTL 145
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 40/182 (21%), Positives = 74/182 (40%), Gaps = 14/182 (7%)
Query: 189 VYLWNACSSKVTKLCD---LGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRT 245
+ +W A K K LGI D V W++ + L + ++IWD S K ++T
Sbjct: 47 IKIWGAYDGKFEKTISGHKLGISD----VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT 102
Query: 246 MEGHRLRVXXXXX--XXXXXXXXXRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDN 303
++GH V D+S+ D++ + + L H V + ++ D
Sbjct: 103 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK-CLKTLPAHSDPVSAVHFNRDG 161
Query: 304 RELASGGNDNRLFVWNQHSTQPVLKYC-EHTAAVKAIAWSPHLHGLLASGGGTADRCIRF 362
+ S D +W+ S Q + + V + +SP+ +LA+ T D ++
Sbjct: 162 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA---TLDNTLKL 218
Query: 363 WN 364
W+
Sbjct: 219 WD 220
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 47/104 (45%), Gaps = 6/104 (5%)
Query: 287 LSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLH 346
L+GH V +K+S + LAS D + +W + + H + +AWS +
Sbjct: 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 78
Query: 347 GLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVN 390
L+++ + D+ ++ W+ ++ C+ T N V+ N N
Sbjct: 79 LLVSA---SDDKTLKIWDVSSG---KCLKTLKGHSNYVFCCNFN 116
Score = 32.3 bits (72), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 33/167 (19%), Positives = 72/167 (43%), Gaps = 6/167 (3%)
Query: 210 SVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVXXXX--XXXXXXXXXX 267
+V SV ++ LA ++ ++IW A K +T+ GH+L +
Sbjct: 25 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS 84
Query: 268 RDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVL 327
DK++ D+ + + + L GH + V ++ + + SG D + +W+ + + +
Sbjct: 85 DDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK 143
Query: 328 KYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCM 374
H+ V A+ ++ +++S + D R W+T + L +
Sbjct: 144 TLPAHSDPVSAVHFNRDGSLIVSS---SYDGLCRIWDTASGQCLKTL 187
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 68/161 (42%), Gaps = 21/161 (13%)
Query: 218 NRNTHLAVGTSH-GKVQIWDASRCKRVRTM---EGHRLRVXXXXXXXXXXXXXXRDKSIL 273
NR+ L V +S+ G +IWD + + ++T+ + + D ++
Sbjct: 163 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLK 222
Query: 274 QRDIRAQEDFVSKLSGHKSE---------VCGLKWSYDNRELASGGNDNRLFVWNQHSTQ 324
D ++ + +GHK+E V G KW + SG DN +++WN + +
Sbjct: 223 LWD-YSKGKCLKTYTGHKNEKYCIFANFSVTGGKW------IVSGSEDNLVYIWNLQTKE 275
Query: 325 PVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNT 365
V K HT V + A P ++AS D+ I+ W +
Sbjct: 276 IVQKLQGHTDVVISTACHP-TENIIASAALENDKTIKLWKS 315
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
Query: 283 FVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWS 342
F +SGHK + + WS D+ L S +D L +W+ S + + H+ V ++
Sbjct: 62 FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN 121
Query: 343 PHLHGLLASGGGTADRCIRFWNTTTNTHLSCM 374
P + +++ G+ D +R W+ T L +
Sbjct: 122 PQSNLIVS---GSFDESVRIWDVKTGKCLKTL 150
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 40/182 (21%), Positives = 74/182 (40%), Gaps = 14/182 (7%)
Query: 189 VYLWNACSSKVTKLCD---LGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRT 245
+ +W A K K LGI D V W++ + L + ++IWD S K ++T
Sbjct: 52 IKIWGAYDGKFEKTISGHKLGISD----VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT 107
Query: 246 MEGHRLRVXXXXX--XXXXXXXXXRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDN 303
++GH V D+S+ D++ + + L H V + ++ D
Sbjct: 108 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK-CLKTLPAHSDPVSAVHFNRDG 166
Query: 304 RELASGGNDNRLFVWNQHSTQPVLKYC-EHTAAVKAIAWSPHLHGLLASGGGTADRCIRF 362
+ S D +W+ S Q + + V + +SP+ +LA+ T D ++
Sbjct: 167 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA---TLDNTLKL 223
Query: 363 WN 364
W+
Sbjct: 224 WD 225
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 47/104 (45%), Gaps = 6/104 (5%)
Query: 287 LSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLH 346
L+GH V +K+S + LAS D + +W + + H + +AWS +
Sbjct: 24 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 83
Query: 347 GLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVN 390
L+++ + D+ ++ W+ ++ C+ T N V+ N N
Sbjct: 84 LLVSA---SDDKTLKIWDVSSG---KCLKTLKGHSNYVFCCNFN 121
Score = 32.3 bits (72), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 33/167 (19%), Positives = 72/167 (43%), Gaps = 6/167 (3%)
Query: 210 SVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVXXXX--XXXXXXXXXX 267
+V SV ++ LA ++ ++IW A K +T+ GH+L +
Sbjct: 30 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS 89
Query: 268 RDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVL 327
DK++ D+ + + + L GH + V ++ + + SG D + +W+ + + +
Sbjct: 90 DDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK 148
Query: 328 KYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCM 374
H+ V A+ ++ +++S + D R W+T + L +
Sbjct: 149 TLPAHSDPVSAVHFNRDGSLIVSS---SYDGLCRIWDTASGQCLKTL 192
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 67/161 (41%), Gaps = 21/161 (13%)
Query: 218 NRNTHLAVGTSH-GKVQIWDASRCKRVRTM---EGHRLRVXXXXXXXXXXXXXXRDKSIL 273
NR+ L V +S+ G +IWD + + ++T+ + + D +
Sbjct: 161 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLK 220
Query: 274 QRDIRAQEDFVSKLSGHKSE---------VCGLKWSYDNRELASGGNDNRLFVWNQHSTQ 324
D ++ + +GHK+E V G KW + SG DN +++WN + +
Sbjct: 221 LWD-YSKGKCLKTYTGHKNEKYCIFANFSVTGGKW------IVSGSEDNMVYIWNLQTKE 273
Query: 325 PVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNT 365
V K HT V + A P ++AS D+ I+ W +
Sbjct: 274 IVQKLQGHTDVVISTACHP-TENIIASAALENDKTIKLWKS 313
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
Query: 283 FVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWS 342
F +SGHK + + WS D+ L S +D L +W+ S + + H+ V ++
Sbjct: 60 FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN 119
Query: 343 PHLHGLLASGGGTADRCIRFWNTTTNTHLSCM 374
P + +++ G+ D +R W+ T L +
Sbjct: 120 PQSNLIVS---GSFDESVRIWDVKTGMCLKTL 148
Score = 35.0 bits (79), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 40/182 (21%), Positives = 73/182 (40%), Gaps = 14/182 (7%)
Query: 189 VYLWNACSSKVTKLCD---LGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRT 245
+ +W A K K LGI D V W++ + L + ++IWD S K ++T
Sbjct: 50 IKIWGAYDGKFEKTISGHKLGISD----VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT 105
Query: 246 MEGHRLRVXXXXX--XXXXXXXXXRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDN 303
++GH V D+S+ D++ + L H V + ++ D
Sbjct: 106 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGM-CLKTLPAHSDPVSAVHFNRDG 164
Query: 304 RELASGGNDNRLFVWNQHSTQPVLKYC-EHTAAVKAIAWSPHLHGLLASGGGTADRCIRF 362
+ S D +W+ S Q + + V + +SP+ +LA+ T D ++
Sbjct: 165 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA---TLDNDLKL 221
Query: 363 WN 364
W+
Sbjct: 222 WD 223
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 47/104 (45%), Gaps = 6/104 (5%)
Query: 287 LSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLH 346
L+GH V +K+S + LAS D + +W + + H + +AWS +
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 347 GLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVN 390
L+++ + D+ ++ W+ ++ C+ T N V+ N N
Sbjct: 82 LLVSA---SDDKTLKIWDVSSG---KCLKTLKGHSNYVFCCNFN 119
Score = 32.0 bits (71), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 33/167 (19%), Positives = 71/167 (42%), Gaps = 6/167 (3%)
Query: 210 SVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVXXXX--XXXXXXXXXX 267
+V SV ++ LA ++ ++IW A K +T+ GH+L +
Sbjct: 28 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS 87
Query: 268 RDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVL 327
DK++ D+ + + + L GH + V ++ + + SG D + +W+ + +
Sbjct: 88 DDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLK 146
Query: 328 KYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCM 374
H+ V A+ ++ +++S + D R W+T + L +
Sbjct: 147 TLPAHSDPVSAVHFNRDGSLIVSS---SYDGLCRIWDTASGQCLKTL 190
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 39/93 (41%), Gaps = 10/93 (10%)
Query: 284 VSKLSGHKSEVCGLKWS-YDNRELASGGNDNRLFVWNQHST-------QPVLKYCEHTAA 335
V + GH + V + W +++ +ASG D + VW +PV+ HT
Sbjct: 74 VPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKR 133
Query: 336 VKAIAWSPHLHGLLASGGGTADRCIRFWNTTTN 368
V +AW P +L S G D I W+ T
Sbjct: 134 VGIVAWHPTAQNVLLSAG--XDNVILVWDVGTG 164
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 65/165 (39%), Gaps = 13/165 (7%)
Query: 232 VQIWDASRCKRVRTMEGHRLRVXXXX--XXXXXXXXXXRDKSILQRDIRAQEDFVSKLSG 289
+++WD + + + GH+ V RDK+I I+ Q ++ L G
Sbjct: 89 LRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ--CLATLLG 146
Query: 290 HKSEVCGL------KWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSP 343
H V + K D+ + S GND + WN + Q + H + + + SP
Sbjct: 147 HNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASP 206
Query: 344 HLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKN 388
L+AS G D I WN + + +V +L +S N
Sbjct: 207 D-GTLIASAG--KDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPN 248
Score = 32.0 bits (71), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 59/140 (42%), Gaps = 14/140 (10%)
Query: 277 IRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAV 336
+ + DF+ GH S + L S D +AS G D + +WN + + + V
Sbjct: 186 FQIEADFI----GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD-EV 240
Query: 337 KAIAWSPHLHGLLASGGGTADRCI----RFWNTTTNTHLSCMDTGSQ--VCNLVWSKNVN 390
++A+SP+ + LA+ T + ++ + ++ +L WS +
Sbjct: 241 FSLAFSPNRY-WLAAATATGIKVFSLDPQYLVDDLRPEFAGYSAAAEPHAVSLAWSADGQ 299
Query: 391 ELVSTHGYSQNQIIVWRYPT 410
L + GY+ N I VW+ T
Sbjct: 300 TLFA--GYTDNVIRVWQVMT 317
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 65/165 (39%), Gaps = 13/165 (7%)
Query: 232 VQIWDASRCKRVRTMEGHRLRVXXXX--XXXXXXXXXXRDKSILQRDIRAQEDFVSKLSG 289
+++WD + + + GH+ V RDK+I I+ Q ++ L G
Sbjct: 89 LRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ--CLATLLG 146
Query: 290 HKSEVCGL------KWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSP 343
H V + K D+ + S GND + WN + Q + H + + + SP
Sbjct: 147 HNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASP 206
Query: 344 HLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKN 388
L+AS G D I WN + + +V +L +S N
Sbjct: 207 D-GTLIASAG--KDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPN 248
Score = 31.6 bits (70), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 59/140 (42%), Gaps = 14/140 (10%)
Query: 277 IRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAV 336
+ + DF+ GH S + L S D +AS G D + +WN + + + V
Sbjct: 186 FQIEADFI----GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD-EV 240
Query: 337 KAIAWSPHLHGLLASGGGTADRCI----RFWNTTTNTHLSCMDTGSQ--VCNLVWSKNVN 390
++A+SP+ + LA+ T + ++ + ++ +L WS +
Sbjct: 241 FSLAFSPNRY-WLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQ 299
Query: 391 ELVSTHGYSQNQIIVWRYPT 410
L + GY+ N I VW+ T
Sbjct: 300 TLFA--GYTDNVIRVWQVMT 317
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 65/165 (39%), Gaps = 13/165 (7%)
Query: 232 VQIWDASRCKRVRTMEGHRLRVXXXX--XXXXXXXXXXRDKSILQRDIRAQEDFVSKLSG 289
+++WD + + + GH+ V RDK+I I+ Q ++ L G
Sbjct: 89 LRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ--CLATLLG 146
Query: 290 HKSEVCGL------KWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSP 343
H V + K D+ + S GND + WN + Q + H + + + SP
Sbjct: 147 HNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASP 206
Query: 344 HLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKN 388
L+AS G D I WN + + +V +L +S N
Sbjct: 207 D-GTLIASAG--KDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPN 248
Score = 31.6 bits (70), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 59/140 (42%), Gaps = 14/140 (10%)
Query: 277 IRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAV 336
+ + DF+ GH S + L S D +AS G D + +WN + + + V
Sbjct: 186 FQIEADFI----GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD-EV 240
Query: 337 KAIAWSPHLHGLLASGGGTADRCI----RFWNTTTNTHLSCMDTGSQ--VCNLVWSKNVN 390
++A+SP+ + LA+ T + ++ + ++ +L WS +
Sbjct: 241 FSLAFSPNRY-WLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQ 299
Query: 391 ELVSTHGYSQNQIIVWRYPT 410
L + GY+ N I VW+ T
Sbjct: 300 TLFA--GYTDNVIRVWQVMT 317
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 39/93 (41%), Gaps = 10/93 (10%)
Query: 284 VSKLSGHKSEVCGLKWS-YDNRELASGGNDNRLFVWNQHST-------QPVLKYCEHTAA 335
V + GH + V + W +++ +ASG D + VW +PV+ HT
Sbjct: 74 VPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKR 133
Query: 336 VKAIAWSPHLHGLLASGGGTADRCIRFWNTTTN 368
V +AW P +L S G D I W+ T
Sbjct: 134 VGIVAWHPTAQNVLLSAG--CDNVILVWDVGTG 164
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 49/91 (53%), Gaps = 7/91 (7%)
Query: 269 DKSILQRDIR-AQEDFVSKLSGHKSEVCGLKWS---YDNRELASGGNDNRLFVWNQH--S 322
D+S+ D+R + ++ L GH+ V + W+ Y N LAS D ++ +W + +
Sbjct: 34 DRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNI-LASCSYDRKVIIWREENGT 92
Query: 323 TQPVLKYCEHTAAVKAIAWSPHLHGLLASGG 353
+ ++ H ++V ++ W+PH +GL+ + G
Sbjct: 93 WEKSHEHAGHDSSVNSVCWAPHDYGLILACG 123
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 65/165 (39%), Gaps = 13/165 (7%)
Query: 232 VQIWDASRCKRVRTMEGHRLRVXXXX--XXXXXXXXXXRDKSILQRDIRAQEDFVSKLSG 289
+++WD + + + GH+ V RDK+I I+ Q ++ L G
Sbjct: 83 LRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ--CLATLLG 140
Query: 290 HKSEVCGL------KWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSP 343
H V + K D+ + S GND + WN + Q + H + + + SP
Sbjct: 141 HNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASP 200
Query: 344 HLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKN 388
L+AS G D I WN + + +V +L +S N
Sbjct: 201 D-GTLIASAG--KDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPN 242
Score = 31.6 bits (70), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 59/140 (42%), Gaps = 14/140 (10%)
Query: 277 IRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAV 336
+ + DF+ GH S + L S D +AS G D + +WN + + + V
Sbjct: 180 FQIEADFI----GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD-EV 234
Query: 337 KAIAWSPHLHGLLASGGGTADRCI----RFWNTTTNTHLSCMDTGSQ--VCNLVWSKNVN 390
++A+SP+ + LA+ T + ++ + ++ +L WS +
Sbjct: 235 FSLAFSPNRY-WLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQ 293
Query: 391 ELVSTHGYSQNQIIVWRYPT 410
L + GY+ N I VW+ T
Sbjct: 294 TLFA--GYTDNVIRVWQVMT 311
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 65/165 (39%), Gaps = 13/165 (7%)
Query: 232 VQIWDASRCKRVRTMEGHRLRVXXXX--XXXXXXXXXXRDKSILQRDIRAQEDFVSKLSG 289
+++WD + + + GH+ V RDK+I I+ Q ++ L G
Sbjct: 89 LRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ--CLATLLG 146
Query: 290 HKSEVCGL------KWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSP 343
H V + K D+ + S GND + WN + Q + H + + + SP
Sbjct: 147 HNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASP 206
Query: 344 HLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKN 388
L+AS G D I WN + + +V +L +S N
Sbjct: 207 D-GTLIASAG--KDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPN 248
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 58/137 (42%), Gaps = 14/137 (10%)
Query: 277 IRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAV 336
+ + DF+ GH S + L S D +AS G D + +WN + + + V
Sbjct: 186 FQIEADFI----GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD-EV 240
Query: 337 KAIAWSPHLHGLLASGGGTADRCI----RFWNTTTNTHLSCMDTGSQ--VCNLVWSKNVN 390
++A+SP+ + LA+ T + ++ + ++ +L WS +
Sbjct: 241 FSLAFSPNRY-WLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQ 299
Query: 391 ELVSTHGYSQNQIIVWR 407
L + GY+ N I VW+
Sbjct: 300 TLFA--GYTDNVIRVWQ 314
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 68/161 (42%), Gaps = 21/161 (13%)
Query: 218 NRNTHLAVGTSH-GKVQIWDASRCKRVRTM---EGHRLRVXXXXXXXXXXXXXXRDKSIL 273
NR+ L V +S+ G +IWD + + ++T+ + + D ++
Sbjct: 161 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLK 220
Query: 274 QRDIRAQEDFVSKLSGHKSE---------VCGLKWSYDNRELASGGNDNRLFVWNQHSTQ 324
D ++ + +GHK+E V G KW + SG DN +++WN + +
Sbjct: 221 LWD-YSKGKCLKTYTGHKNEKYCIFANFSVTGGKW------IVSGSEDNLVYIWNLQTKE 273
Query: 325 PVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNT 365
V K HT V + A P ++AS D+ I+ W +
Sbjct: 274 IVQKLQGHTDVVISTACHP-TENIIASAALENDKTIKLWKS 313
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
Query: 283 FVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWS 342
F +SGHK + + WS D+ L S +D L +W+ S + + H+ V ++
Sbjct: 60 FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN 119
Query: 343 PHLHGLLASGGGTADRCIRFWNTTTNTHLSCM 374
P + +++ G+ D +R W+ T L +
Sbjct: 120 PQSNLIVS---GSFDESVRIWDVKTGKCLKTL 148
Score = 35.8 bits (81), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 40/182 (21%), Positives = 74/182 (40%), Gaps = 14/182 (7%)
Query: 189 VYLWNACSSKVTKLCD---LGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRT 245
+ +W A K K LGI D V W++ + L + ++IWD S K ++T
Sbjct: 50 IKIWGAYDGKFEKTISGHKLGISD----VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT 105
Query: 246 MEGHRLRVXXXXX--XXXXXXXXXRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDN 303
++GH V D+S+ D++ + + L H V + ++ D
Sbjct: 106 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK-CLKTLPAHSDPVSAVHFNRDG 164
Query: 304 RELASGGNDNRLFVWNQHSTQPVLKYC-EHTAAVKAIAWSPHLHGLLASGGGTADRCIRF 362
+ S D +W+ S Q + + V + +SP+ +LA+ T D ++
Sbjct: 165 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA---TLDNTLKL 221
Query: 363 WN 364
W+
Sbjct: 222 WD 223
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 47/104 (45%), Gaps = 6/104 (5%)
Query: 287 LSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLH 346
L+GH V +K+S + LA+ D + +W + + H + +AWS +
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 347 GLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVN 390
L+++ + D+ ++ W+ ++ C+ T N V+ N N
Sbjct: 82 LLVSA---SDDKTLKIWDVSSG---KCLKTLKGHSNYVFCCNFN 119
Score = 32.3 bits (72), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 33/167 (19%), Positives = 72/167 (43%), Gaps = 6/167 (3%)
Query: 210 SVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVXXXX--XXXXXXXXXX 267
+V SV ++ LA ++ ++IW A K +T+ GH+L +
Sbjct: 28 AVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS 87
Query: 268 RDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVL 327
DK++ D+ + + + L GH + V ++ + + SG D + +W+ + + +
Sbjct: 88 DDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK 146
Query: 328 KYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCM 374
H+ V A+ ++ +++S + D R W+T + L +
Sbjct: 147 TLPAHSDPVSAVHFNRDGSLIVSS---SYDGLCRIWDTASGQCLKTL 190
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 17/117 (14%)
Query: 269 DKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRE-LASGGNDNRLFVWN------QH 321
DK++ D+R + + HK E+ ++WS N LAS G D RL VW+ +
Sbjct: 295 DKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQ 354
Query: 322 STQ------PVLKYCE--HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTH 370
S + P L + HTA + +W+P+ ++ S + D ++ W N +
Sbjct: 355 SPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICS--VSEDNIMQVWQMAENIY 409
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 45/87 (51%), Gaps = 6/87 (6%)
Query: 282 DFVSKLSGHKSEVCGLKWSYDNREL-ASGGNDNRLFVWNQHS---TQPVLKYCEHTAAVK 337
D + +GH + V + W + L S +D +L +W+ S ++P HTA V
Sbjct: 218 DAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVN 277
Query: 338 AIAWSPHLHGLLASGGGTADRCIRFWN 364
++++P+ +LA+ G+AD+ + W+
Sbjct: 278 CLSFNPYSEFILAT--GSADKTVALWD 302
Score = 32.3 bits (72), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 10/91 (10%)
Query: 286 KLSGHKSEVCGLKWSYD-NRELASGGNDNRLFVWNQHSTQPVLK-------YCEHTAAVK 337
+L GH+ E GL W+ + + L S +D+ + +W+ + K + HTA V+
Sbjct: 172 RLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVE 231
Query: 338 AIAWSPHLHGLLASGGGTADRCIRFWNTTTN 368
++W HL G D+ + W+T +N
Sbjct: 232 DVSW--HLLHESLFGSVADDQKLMIWDTRSN 260
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
Query: 283 FVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWS 342
F +SGHK + + WS D+ L S +D L +W+ S + + H+ V ++
Sbjct: 60 FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN 119
Query: 343 PHLHGLLASGGGTADRCIRFWNTTTNTHLSCM 374
P + +++ G+ D +R W+ T L +
Sbjct: 120 PQSNLIVS---GSFDESVRIWDVKTGKCLKTL 148
Score = 36.2 bits (82), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 40/182 (21%), Positives = 74/182 (40%), Gaps = 14/182 (7%)
Query: 189 VYLWNACSSKVTKLCD---LGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRT 245
+ +W A K K LGI D V W++ + L + ++IWD S K ++T
Sbjct: 50 IKIWGAYDGKFEKTISGHKLGISD----VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT 105
Query: 246 MEGHRLRVXXXXX--XXXXXXXXXRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDN 303
++GH V D+S+ D++ + + L H V + ++ D
Sbjct: 106 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK-CLKTLPAHSDPVSAVHFNRDG 164
Query: 304 RELASGGNDNRLFVWNQHSTQPVLKYC-EHTAAVKAIAWSPHLHGLLASGGGTADRCIRF 362
+ S D +W+ S Q + + V + +SP+ +LA+ T D ++
Sbjct: 165 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA---TLDNTLKL 221
Query: 363 WN 364
W+
Sbjct: 222 WD 223
Score = 35.0 bits (79), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 68/161 (42%), Gaps = 21/161 (13%)
Query: 218 NRNTHLAVGTSH-GKVQIWDASRCKRVRTM---EGHRLRVXXXXXXXXXXXXXXRDKSIL 273
NR+ L V +S+ G +IWD + + ++T+ + + D ++
Sbjct: 161 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLK 220
Query: 274 QRDIRAQEDFVSKLSGHKSE---------VCGLKWSYDNRELASGGNDNRLFVWNQHSTQ 324
D ++ + +GHK+E V G KW + SG DN +++WN + +
Sbjct: 221 LWD-YSKGKCLKTYTGHKNEKYCIFANFSVTGGKW------IVSGSEDNLVYIWNLQTKE 273
Query: 325 PVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNT 365
V K HT V + A P ++AS D+ I+ + +
Sbjct: 274 IVQKLQGHTDVVISTACHP-TENIIASAALENDKTIKLFKS 313
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 47/104 (45%), Gaps = 6/104 (5%)
Query: 287 LSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLH 346
L+GH V +K+S + LAS D + +W + + H + +AWS +
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 347 GLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVN 390
L+++ + D+ ++ W+ ++ C+ T N V+ N N
Sbjct: 82 LLVSA---SDDKTLKIWDVSSG---KCLKTLKGHSNYVFCCNFN 119
Score = 32.0 bits (71), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 33/167 (19%), Positives = 72/167 (43%), Gaps = 6/167 (3%)
Query: 210 SVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVXXXX--XXXXXXXXXX 267
+V SV ++ LA ++ ++IW A K +T+ GH+L +
Sbjct: 28 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS 87
Query: 268 RDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVL 327
DK++ D+ + + + L GH + V ++ + + SG D + +W+ + + +
Sbjct: 88 DDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK 146
Query: 328 KYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCM 374
H+ V A+ ++ +++S + D R W+T + L +
Sbjct: 147 TLPAHSDPVSAVHFNRDGSLIVSS---SYDGLCRIWDTASGQCLKTL 190
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
Query: 283 FVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWS 342
F +SGHK + + WS D+ L S +D L +W+ S + + H+ V ++
Sbjct: 60 FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN 119
Query: 343 PHLHGLLASGGGTADRCIRFWNTTTNTHLSCM 374
P + +++ G+ D +R W+ T L +
Sbjct: 120 PQSNLIVS---GSFDESVRIWDVKTGKCLKTL 148
Score = 36.2 bits (82), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 40/182 (21%), Positives = 74/182 (40%), Gaps = 14/182 (7%)
Query: 189 VYLWNACSSKVTKLCD---LGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRT 245
+ +W A K K LGI D V W++ + L + ++IWD S K ++T
Sbjct: 50 IKIWGAYDGKFEKTISGHKLGISD----VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT 105
Query: 246 MEGHRLRVXXXXX--XXXXXXXXXRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDN 303
++GH V D+S+ D++ + + L H V + ++ D
Sbjct: 106 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK-CLKTLPAHSDPVSAVHFNRDG 164
Query: 304 RELASGGNDNRLFVWNQHSTQPVLKYC-EHTAAVKAIAWSPHLHGLLASGGGTADRCIRF 362
+ S D +W+ S Q + + V + +SP+ +LA+ T D ++
Sbjct: 165 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA---TLDNTLKL 221
Query: 363 WN 364
W+
Sbjct: 222 WD 223
Score = 35.8 bits (81), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 68/161 (42%), Gaps = 21/161 (13%)
Query: 218 NRNTHLAVGTSH-GKVQIWDASRCKRVRTM---EGHRLRVXXXXXXXXXXXXXXRDKSIL 273
NR+ L V +S+ G +IWD + + ++T+ + + D ++
Sbjct: 161 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLK 220
Query: 274 QRDIRAQEDFVSKLSGHKSE---------VCGLKWSYDNRELASGGNDNRLFVWNQHSTQ 324
D ++ + +GHK+E V G KW + SG DN +++WN + +
Sbjct: 221 LWD-YSKGKCLKTYTGHKNEKYCIFANFSVTGGKW------IVSGSEDNLVYIWNLQTKE 273
Query: 325 PVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNT 365
V K HT V + A P ++AS D+ I+ + +
Sbjct: 274 IVQKLQGHTDVVISTACHP-TENIIASAALENDKTIKLYKS 313
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 47/104 (45%), Gaps = 6/104 (5%)
Query: 287 LSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLH 346
L+GH V +K+S + LAS D + +W + + H + +AWS +
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 347 GLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVN 390
L+++ + D+ ++ W+ ++ C+ T N V+ N N
Sbjct: 82 LLVSA---SDDKTLKIWDVSSG---KCLKTLKGHSNYVFCCNFN 119
Score = 32.0 bits (71), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 33/167 (19%), Positives = 72/167 (43%), Gaps = 6/167 (3%)
Query: 210 SVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVXXXX--XXXXXXXXXX 267
+V SV ++ LA ++ ++IW A K +T+ GH+L +
Sbjct: 28 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS 87
Query: 268 RDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVL 327
DK++ D+ + + + L GH + V ++ + + SG D + +W+ + + +
Sbjct: 88 DDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK 146
Query: 328 KYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCM 374
H+ V A+ ++ +++S + D R W+T + L +
Sbjct: 147 TLPAHSDPVSAVHFNRDGSLIVSS---SYDGLCRIWDTASGQCLKTL 190
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 17/117 (14%)
Query: 269 DKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRE-LASGGNDNRLFVWN------QH 321
DK++ D+R + + HK E+ + WS N LAS G D RL VW+ +
Sbjct: 297 DKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQ 356
Query: 322 STQ------PVLKYCE--HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTH 370
S + P L + HTA + +W+P+ ++ S + D ++ W N +
Sbjct: 357 SAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICS--VSEDNIMQIWQMAENIY 411
Score = 36.2 bits (82), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 45/87 (51%), Gaps = 6/87 (6%)
Query: 282 DFVSKLSGHKSEVCGLKWSYDNREL-ASGGNDNRLFVWNQHS---TQPVLKYCEHTAAVK 337
D + +GH + V + W + L S +D +L +W+ S ++P HTA V
Sbjct: 220 DAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVN 279
Query: 338 AIAWSPHLHGLLASGGGTADRCIRFWN 364
++++P+ +LA+ G+AD+ + W+
Sbjct: 280 CLSFNPYSEFILAT--GSADKTVALWD 304
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 60/134 (44%), Gaps = 17/134 (12%)
Query: 286 KLSGHKSEVCGLKWSYD-NRELASGGNDNRLFVWNQHSTQPVLK-------YCEHTAAVK 337
+L GH+ E GL W+ + + L S +D+ + +W+ ++ K + H+A V+
Sbjct: 174 RLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVE 233
Query: 338 AIAWSPHLHGLLASGGGTADRCIRFWNTTTNT-----HLSCMDTGSQVCNLVWSKNVNEL 392
+AW HL G D+ + W+T +NT HL +D + N + +E
Sbjct: 234 DVAW--HLLHESLFGSVADDQKLMIWDTRSNTTSKPSHL--VDAHTAEVNCLSFNPYSEF 289
Query: 393 VSTHGYSQNQIIVW 406
+ G + + +W
Sbjct: 290 ILATGSADKTVALW 303
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 49/94 (52%), Gaps = 8/94 (8%)
Query: 269 DKSILQRDIRAQ-EDFVSKLSGHKSEVCGLKWSYD--NRELASGGNDNRLFVWNQHSTQ- 324
DK+I ++ + + L+GH+ V + W++ LAS D ++ +W + + +
Sbjct: 32 DKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRW 91
Query: 325 -PVLKYCEHTAAVKAIAWSPHLHG---LLASGGG 354
+ + H+A+V ++ W+PH +G L+AS G
Sbjct: 92 SQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDG 125
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 49/94 (52%), Gaps = 8/94 (8%)
Query: 269 DKSILQRDIRAQ-EDFVSKLSGHKSEVCGLKWSYDN--RELASGGNDNRLFVWNQHSTQ- 324
DK+I ++ + + L+GH+ V + W++ LAS D ++ +W + + +
Sbjct: 30 DKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRW 89
Query: 325 -PVLKYCEHTAAVKAIAWSPHLHG---LLASGGG 354
+ + H+A+V ++ W+PH +G L+AS G
Sbjct: 90 SQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDG 123
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 63/135 (46%), Gaps = 12/135 (8%)
Query: 268 RDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVL 327
D+ I DI ++ V L GH+ ++ L + +L SG D + +W+ + Q L
Sbjct: 143 EDRLIRIWDIENRK-IVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSL 201
Query: 328 KYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQ-------- 379
V +A SP +A+G + DR +R W++ T + +D+ ++
Sbjct: 202 TLSIEDG-VTTVAVSPGDGKYIAAG--SLDRAVRVWDSETGFLVERLDSENESGTGHKDS 258
Query: 380 VCNLVWSKNVNELVS 394
V ++V++++ +VS
Sbjct: 259 VYSVVFTRDGQSVVS 273
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 49/229 (21%), Positives = 91/229 (39%), Gaps = 30/229 (13%)
Query: 167 DFYLNLVDWS-SHNVLAVGLGN-CVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLA 224
D Y+ V +S LA G + + +W+ + K+ + G + + S+ + L
Sbjct: 123 DLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQ-GHEQDIYSLDYFPSGDKLV 181
Query: 225 VGTSHGKVQIWD--ASRCKRVRTMEGHRLRVXXXXXXXXXXXXXXRDKSILQRDIRAQED 282
G+ V+IWD +C ++E V D+++ D ++
Sbjct: 182 SGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWD--SETG 239
Query: 283 F-VSKL-------SGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQH-------STQPVL 327
F V +L +GHK V + ++ D + + SG D + +WN S P
Sbjct: 240 FLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNS 299
Query: 328 KYCE-----HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHL 371
CE H V ++A + + +L+ G+ DR + FW+ + L
Sbjct: 300 GTCEVTYIGHKDFVLSVATTQNDEYILS---GSKDRGVLFWDKKSGNPL 345
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 26/52 (50%)
Query: 289 GHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIA 340
GHK V + + ++ + SG D + W++ S P+L H +V ++A
Sbjct: 308 GHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVA 359
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 49/94 (52%), Gaps = 8/94 (8%)
Query: 269 DKSILQRDIRAQ-EDFVSKLSGHKSEVCGLKWSYD--NRELASGGNDNRLFVWNQHSTQ- 324
DK+I ++ + + L+GH+ V + W++ LAS D ++ +W + + +
Sbjct: 30 DKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRW 89
Query: 325 -PVLKYCEHTAAVKAIAWSPHLHG---LLASGGG 354
+ + H+A+V ++ W+PH +G L+AS G
Sbjct: 90 SQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDG 123
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 287 LSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLH 346
L GH +++ + W D+R L S D +L +W+ ++T V ++ V A++P
Sbjct: 51 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAP--S 108
Query: 347 GLLASGGGTADRC 359
G + GG + C
Sbjct: 109 GNYVACGGLDNIC 121
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 7/69 (10%)
Query: 269 DKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLK 328
DK++ D+R + + GH+SEV + +S DNR++ S G + + +WN +L
Sbjct: 97 DKTLRLWDLRTGTTY-KRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWN------ILG 149
Query: 329 YCEHTAAVK 337
C+ ++A K
Sbjct: 150 ECKFSSAEK 158
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 3/89 (3%)
Query: 287 LSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLH 346
L+GH V L S +N S D L +W+ + ++ H + V ++A+SP
Sbjct: 72 LTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNR 131
Query: 347 GLLASGGGTADRCIRFWNTTTNTHLSCMD 375
+L++G A+R I+ WN S +
Sbjct: 132 QILSAG---AEREIKLWNILGECKFSSAE 157
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 287 LSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLH 346
H+S V L S + + +A+GG D +L +W+ + + + + + IA++P L
Sbjct: 209 FKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQ 268
Query: 347 GLLASGGGTADRCIRFWNTTTNT 369
+A G D+ ++ +N T +
Sbjct: 269 -WVAVG---TDQGVKIFNLMTQS 287
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 49/94 (52%), Gaps = 8/94 (8%)
Query: 269 DKSILQRDIRAQ-EDFVSKLSGHKSEVCGLKWSYD--NRELASGGNDNRLFVWNQHSTQ- 324
DK+I ++ + + L+GH+ V + W++ LAS D ++ +W + + +
Sbjct: 30 DKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRW 89
Query: 325 -PVLKYCEHTAAVKAIAWSPHLHG---LLASGGG 354
+ + H+A+V ++ W+PH +G L+AS G
Sbjct: 90 SQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDG 123
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 287 LSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLH 346
L GH +++ + W D+R L S D +L +W+ ++T V ++ V A++P
Sbjct: 62 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAP--S 119
Query: 347 GLLASGGGTADRC 359
G + GG + C
Sbjct: 120 GNYVACGGLDNIC 132
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 287 LSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLH 346
L GH +++ + W D+R L S D +L +W+ ++T V ++ V A++P
Sbjct: 51 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAP--S 108
Query: 347 GLLASGGGTADRC 359
G + GG + C
Sbjct: 109 GNYVACGGLDNIC 121
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 67/175 (38%), Gaps = 24/175 (13%)
Query: 179 NVLAVGLGNC-VYLW--NACS---SKVTKLC---DLGIDDSVCSVGWANRNTHL-AVGTS 228
NVLA G N +++W N C+ S T L + D V S+ W H+ A S
Sbjct: 127 NVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGS 186
Query: 229 HGKVQIWDASRCKRVRTME--------GHRLRVXX----XXXXXXXXXXXXRDKSILQRD 276
IWD K V + +L V D SIL D
Sbjct: 187 SNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWD 246
Query: 277 IRAQEDFVSKLS-GHKSEVCGLKWSY-DNRELASGGNDNRLFVWNQHSTQPVLKY 329
+R + L+ GH+ + L W + D L S G DN + +WN S + + ++
Sbjct: 247 LRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQF 301
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 52/239 (21%), Positives = 97/239 (40%), Gaps = 31/239 (12%)
Query: 163 ALQDDFYLNLVDWSSHN-VLAVGLGNC---VYLWNACSSKVTKLCDLGI-DDSVCSVGW- 216
+LQ D N +DWS +N ++A L N +Y N ++ + + SV +V +
Sbjct: 63 SLQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFN 122
Query: 217 ANRNTHLAVGTSHGKVQIWDASRCKRV----------RTMEGHRLRVXXXXXXXXXXXXX 266
A ++ LA G ++G++ IWD ++C ++M +
Sbjct: 123 AKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFA 182
Query: 267 XRDKSILQR--DIRAQED-----FVSKLSGHKSEVCGLKWSYDN--RELASGGNDN--RL 315
S D++A+++ + S SG K ++ ++W N R + G+DN +
Sbjct: 183 SAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSI 242
Query: 316 FVWNQHSTQPVLKYCE--HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLS 372
+W+ + L+ H + ++ W LL S G D + WN + LS
Sbjct: 243 LIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSG--RDNTVLLWNPESAEQLS 299
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 66/165 (40%), Gaps = 13/165 (7%)
Query: 232 VQIWDASRCKRVRTMEGHRLRVXXXX--XXXXXXXXXXRDKSILQRDIRAQEDFVSKLSG 289
+++WD + + + GH+ V RDK+I I+ Q ++ L G
Sbjct: 89 LRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTIKGQ--CLATLLG 146
Query: 290 HKSEVCGL------KWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSP 343
H V + K D+ + S GND + WN + Q + H + + + SP
Sbjct: 147 HNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASP 206
Query: 344 HLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKN 388
L+AS G D I WN + +V +L +S N
Sbjct: 207 D-GTLIASAG--KDGEIXLWNLAAKKAXYTLSAQDEVFSLAFSPN 248
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 58/140 (41%), Gaps = 14/140 (10%)
Query: 277 IRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAV 336
+ + DF+ GH S + L S D +AS G D + +WN + + V
Sbjct: 186 FQIEADFI----GHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQD-EV 240
Query: 337 KAIAWSPHLHGLLASGGGTADRCI----RFWNTTTNTHLSCMDTGSQ--VCNLVWSKNVN 390
++A+SP+ + LA+ T + ++ + ++ +L WS +
Sbjct: 241 FSLAFSPNRY-WLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQ 299
Query: 391 ELVSTHGYSQNQIIVWRYPT 410
L + GY+ N I VW+ T
Sbjct: 300 TLFA--GYTDNVIRVWQVXT 317
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 287 LSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLH 346
L GH +++ + W D+R L S D +L +W+ ++T V ++ V A++P
Sbjct: 51 LRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAP--S 108
Query: 347 GLLASGGGTADRC 359
G + GG + C
Sbjct: 109 GNYVACGGLDNIC 121
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 42/97 (43%), Gaps = 9/97 (9%)
Query: 269 DKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRE-LASGGNDNRLFVWNQHSTQPVL 327
DK++ D+R + + HK E+ + WS N LAS G D RL VW+ +
Sbjct: 297 DKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWD------LS 350
Query: 328 KYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWN 364
K E +A A P L L GG TA WN
Sbjct: 351 KIGEEQSAEDAEDGPPEL--LFIHGGHTAKISDFSWN 385
Score = 35.4 bits (80), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 45/87 (51%), Gaps = 6/87 (6%)
Query: 282 DFVSKLSGHKSEVCGLKWSYDNREL-ASGGNDNRLFVWNQHS---TQPVLKYCEHTAAVK 337
D + +GH + V + W + L S +D +L +W+ S ++P HTA V
Sbjct: 220 DAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVN 279
Query: 338 AIAWSPHLHGLLASGGGTADRCIRFWN 364
++++P+ +LA+ G+AD+ + W+
Sbjct: 280 CLSFNPYSEFILAT--GSADKTVALWD 304
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 60/134 (44%), Gaps = 17/134 (12%)
Query: 286 KLSGHKSEVCGLKWSYD-NRELASGGNDNRLFVWNQHSTQPVLK-------YCEHTAAVK 337
+L GH+ E GL W+ + + L S +D+ + +W+ ++ K + H+A V+
Sbjct: 174 RLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVE 233
Query: 338 AIAWSPHLHGLLASGGGTADRCIRFWNTTTNT-----HLSCMDTGSQVCNLVWSKNVNEL 392
+AW HL G D+ + W+T +NT HL +D + N + +E
Sbjct: 234 DVAW--HLLHESLFGSVADDQKLXIWDTRSNTTSKPSHL--VDAHTAEVNCLSFNPYSEF 289
Query: 393 VSTHGYSQNQIIVW 406
+ G + + +W
Sbjct: 290 ILATGSADKTVALW 303
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 287 LSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLH 346
L GH +++ + W D+R L S D +L +W+ ++T V ++ V A++P
Sbjct: 51 LRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAP--S 108
Query: 347 GLLASGGGTADRC 359
G + GG + C
Sbjct: 109 GNYVACGGLDNIC 121
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 36.6 bits (83), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 10/82 (12%)
Query: 278 RAQEDF--VSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVW-----NQHSTQPVLKYC 330
+ Q+DF V+ L GH++EV + W+ LA+ D ++VW +++ VL
Sbjct: 90 KNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLN-- 147
Query: 331 EHTAAVKAIAWSPHLHGLLASG 352
HT VK + W P LLAS
Sbjct: 148 SHTQDVKHVVWHPS-QELLASA 168
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 33/82 (40%), Gaps = 5/82 (6%)
Query: 283 FVSKLSGHKSEVCG-LKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYC---EHTAAVKA 338
+ ++ H C L W+ LAS G D R+ +W + K H V+
Sbjct: 7 LLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRK 66
Query: 339 IAWSPHLHGLLASGGGTADRCI 360
+AWSP LAS A CI
Sbjct: 67 VAWSP-CGNYLASASFDATTCI 87
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 69/188 (36%), Gaps = 29/188 (15%)
Query: 206 GIDDSVCSVGWANRNTHLAVGTSHGKVQIW-----DASRCKRVRTMEGHRLRVXXXXXXX 260
G ++ V SV WA LA + V +W D C V ++
Sbjct: 103 GHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQ 162
Query: 261 XXXXXXXRDKSILQRDIRAQED---FVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFV 317
D ++ + R +ED + L GH+S V L + + LAS +D + +
Sbjct: 163 ELLASASYDDTV--KLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRI 220
Query: 318 WNQH-----------STQPVLK-YCE----HTAAVKAIAWSPHLHGLLASGGGTADRCIR 361
W Q+ + P K C H+ + IAW L G LA+ G D IR
Sbjct: 221 WRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWC-QLTGALATACG--DDAIR 277
Query: 362 FWNTTTNT 369
+ N+
Sbjct: 278 VFQEDPNS 285
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 36.6 bits (83), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 6/87 (6%)
Query: 277 IRAQEDFVSK----LSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEH 332
+ A FV K L GH ++V + W D R + S D ++ VW+ +T
Sbjct: 46 VEALGQFVMKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMP 105
Query: 333 TAAVKAIAWSPHLHGLLASGGGTADRC 359
V A A++P G + GG ++C
Sbjct: 106 CTWVMACAYAP--SGCAIACGGLDNKC 130
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Query: 283 FVSKLSGHKSEVCGLKW--SYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIA 340
+ GH ++V L S SGG D + VW+ S Q V + H + V ++
Sbjct: 188 LLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVR 247
Query: 341 WSP 343
+ P
Sbjct: 248 YYP 250
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 33/169 (19%), Positives = 64/169 (37%), Gaps = 8/169 (4%)
Query: 210 SVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVXXX----XXXXXXXXX 265
S CS + N + + + G +WD + +++ GH V
Sbjct: 158 SACS--FTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVS 215
Query: 266 XXRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQP 325
DK + D+R+ + V H+S+V +++ ASG +D +++ + +
Sbjct: 216 GGCDKKAMVWDMRSGQ-CVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADRE 274
Query: 326 VLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCM 374
V Y + + A + L G L G D I W+ + +S +
Sbjct: 275 VAIYSKESIIFGASSVDFSLSGRLLF-AGYNDYTINVWDVLKGSRVSIL 322
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 69/185 (37%), Gaps = 11/185 (5%)
Query: 226 GTSHGKVQIWDASRCKRVRTMEGHRLRVXXXXXXXXXXXXXXRDKSILQRDIRAQEDFVS 285
G+ +++W A K +RT+ GH V D+++ + E +
Sbjct: 135 GSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGE-CIH 193
Query: 286 KLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHL 345
L GH S V + + + SG D L VW+ + Q + H AAV+ + +
Sbjct: 194 TLYGHTSTVRCMH--LHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGR- 250
Query: 346 HGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIV 405
G D ++ W+ T T C+ T N V+S + + G I V
Sbjct: 251 ----RVVSGAYDFMVKVWDPETET---CLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRV 303
Query: 406 WRYPT 410
W T
Sbjct: 304 WDVET 308
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 10/84 (11%)
Query: 286 KLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYC----EHTAAVKAIAW 341
+ GH +V + +S DNR++ SG D + +WN T V KY H+ V + +
Sbjct: 123 RFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWN---TLGVCKYTVQDESHSEWVSCVRF 179
Query: 342 SPHLHG-LLASGGGTADRCIRFWN 364
SP+ ++ S G D+ ++ WN
Sbjct: 180 SPNSSNPIIVSCG--WDKLVKVWN 201
Score = 35.8 bits (81), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 66/176 (37%), Gaps = 7/176 (3%)
Query: 226 GTSHGKVQIWDASRCKRVRTMEGHRLRVXXXXXXX--XXXXXXXRDKSILQRDIRAQEDF 283
G+ G +++WD + R GH V RDK+I + +
Sbjct: 104 GSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKY 163
Query: 284 VSKLSGHKSEVCGLKWS--YDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAW 341
+ H V +++S N + S G D + VWN + + + HT + +
Sbjct: 164 TVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTV 223
Query: 342 SPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHG 397
SP L ASGG D W+ HL +D G + L +S N L + G
Sbjct: 224 SPD-GSLCASGG--KDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATG 276
Score = 35.4 bits (80), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 7/102 (6%)
Query: 268 RDKSILQRDIRAQEDFVS----KLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHST 323
RDK+I+ + E L GH V + S D + SG D L +W+ +
Sbjct: 59 RDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTG 118
Query: 324 QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNT 365
++ HT V ++A+S +++ G+ D+ I+ WNT
Sbjct: 119 TTTRRFVGHTKDVLSVAFSSDNRQIVS---GSRDKTIKLWNT 157
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 56/129 (43%), Gaps = 17/129 (13%)
Query: 289 GHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGL 348
GH + + S D ASGG D + +W+ + + L + + A+ +SP+ + L
Sbjct: 213 GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKH-LYTLDGGDIINALCFSPNRYWL 271
Query: 349 LASGGGTADRCIRFWNTTTNTHL-----SCMDTGS-----QVCNLVWSKNVNELVSTHGY 398
A+ G + I+ W+ + + T S Q +L WS + L + GY
Sbjct: 272 CAATGPS----IKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFA--GY 325
Query: 399 SQNQIIVWR 407
+ N + VW+
Sbjct: 326 TDNLVRVWQ 334
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 32/147 (21%), Positives = 59/147 (40%), Gaps = 9/147 (6%)
Query: 180 VLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASR 239
+++ G V +WN + K+ K +G + +V + + A G G+ +WD +
Sbjct: 188 IVSCGWDKLVKVWNLANCKL-KTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNE 246
Query: 240 CKRVRTMEGHRLRVXXXXXXXXXXXXXXRDKSILQRDIRAQ-------EDFVSKLSGHKS 292
K + T++G + SI D+ + ++ +S S +
Sbjct: 247 GKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEP 306
Query: 293 EVC-GLKWSYDNRELASGGNDNRLFVW 318
C L WS D + L +G DN + VW
Sbjct: 307 PQCTSLAWSADGQTLFAGYTDNLVRVW 333
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 10/84 (11%)
Query: 286 KLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYC----EHTAAVKAIAW 341
+ GH +V + +S DNR++ SG D + +WN T V KY H+ V + +
Sbjct: 100 RFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWN---TLGVCKYTVQDESHSEWVSCVRF 156
Query: 342 SPHLHG-LLASGGGTADRCIRFWN 364
SP+ ++ S G D+ ++ WN
Sbjct: 157 SPNSSNPIIVSCG--WDKLVKVWN 178
Score = 35.8 bits (81), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 66/176 (37%), Gaps = 7/176 (3%)
Query: 226 GTSHGKVQIWDASRCKRVRTMEGHRLRVXXXXXXX--XXXXXXXRDKSILQRDIRAQEDF 283
G+ G +++WD + R GH V RDK+I + +
Sbjct: 81 GSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKY 140
Query: 284 VSKLSGHKSEVCGLKWS--YDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAW 341
+ H V +++S N + S G D + VWN + + + HT + +
Sbjct: 141 TVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTV 200
Query: 342 SPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHG 397
SP L ASGG D W+ HL +D G + L +S N L + G
Sbjct: 201 SPD-GSLCASGG--KDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATG 253
Score = 35.4 bits (80), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 7/102 (6%)
Query: 268 RDKSILQRDIRAQEDFVS----KLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHST 323
RDK+I+ + E L GH V + S D + SG D L +W+ +
Sbjct: 36 RDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTG 95
Query: 324 QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNT 365
++ HT V ++A+S +++ G+ D+ I+ WNT
Sbjct: 96 TTTRRFVGHTKDVLSVAFSSDNRQIVS---GSRDKTIKLWNT 134
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 32/148 (21%), Positives = 59/148 (39%), Gaps = 9/148 (6%)
Query: 180 VLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASR 239
+++ G V +WN + K+ K +G + +V + + A G G+ +WD +
Sbjct: 165 IVSCGWDKLVKVWNLANCKL-KTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNE 223
Query: 240 CKRVRTMEGHRLRVXXXXXXXXXXXXXXRDKSILQRDIRAQ-------EDFVSKLSGHKS 292
K + T++G + SI D+ + ++ +S S +
Sbjct: 224 GKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEP 283
Query: 293 EVC-GLKWSYDNRELASGGNDNRLFVWN 319
C L WS D + L +G DN + VW
Sbjct: 284 PQCTSLAWSADGQTLFAGYTDNLVRVWQ 311
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 56/129 (43%), Gaps = 17/129 (13%)
Query: 289 GHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGL 348
GH + + S D ASGG D + +W+ + + L + + A+ +SP+ + L
Sbjct: 190 GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKH-LYTLDGGDIINALCFSPNRYWL 248
Query: 349 LASGGGTADRCIRFWNTTTNTHL-----SCMDTGS-----QVCNLVWSKNVNELVSTHGY 398
A+ G + I+ W+ + + T S Q +L WS + L + GY
Sbjct: 249 CAATGPS----IKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFA--GY 302
Query: 399 SQNQIIVWR 407
+ N + VW+
Sbjct: 303 TDNLVRVWQ 311
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 36.2 bits (82), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 49/94 (52%), Gaps = 8/94 (8%)
Query: 269 DKSILQRDIRAQ-EDFVSKLSGHKSEVCGLKWSYD--NRELASGGNDNRLFVWNQHSTQ- 324
DK+I ++ + + L+GH+ V + W++ LAS D ++ +W + + +
Sbjct: 30 DKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVXIWKEENGRW 89
Query: 325 -PVLKYCEHTAAVKAIAWSPHLHG---LLASGGG 354
+ + H+A+V ++ W+PH +G L+AS G
Sbjct: 90 SQIAVHAVHSASVNSVQWAPHEYGPXLLVASSDG 123
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 35.8 bits (81), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
Query: 287 LSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLH 346
L GH +V L W+ + + S D RL VWN ++Q H V A++P +
Sbjct: 62 LQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAP--N 119
Query: 347 GLLASGGGTADRCIRF 362
G + GG C F
Sbjct: 120 GQSVACGGLDSACSIF 135
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 34.7 bits (78), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 6/78 (7%)
Query: 290 HKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAW--SPHLHG 347
H V + WS D ++ + D +W+ S Q ++ +H A VK I W +P+
Sbjct: 85 HTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQ-AIQIAQHDAPVKTIHWIKAPNYSC 143
Query: 348 LLASGGGTADRCIRFWNT 365
++ G+ D+ ++FW+T
Sbjct: 144 VMT---GSWDKTLKFWDT 158
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 73/183 (39%), Gaps = 38/183 (20%)
Query: 157 KILDAPALQDDFYLNLVDW-SSHNVLAVGLGNCVYLWNACSSKVTKLCDL---------- 205
K+ D LQ N + SH++ V +C+ KV +LCDL
Sbjct: 125 KVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKV-QLCDLKSGSCSHILQ 183
Query: 206 GIDDSVCSVGWANRNTH-LAVGTSHGKVQIWDASRCKRVRTMEGHRLRVXXXXXXXXXXX 264
G + +V W+ R + LA ++ +V++WD VR G +
Sbjct: 184 GHRQEILAVSWSPRYDYILATASADSRVKLWD------VRRASGCLI------------- 224
Query: 265 XXXRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQ 324
++ Q + + + S + H +V GL ++ D L + G DNR+ +WN + +
Sbjct: 225 ------TLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGE 278
Query: 325 PVL 327
L
Sbjct: 279 NTL 281
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 39/79 (49%), Gaps = 15/79 (18%)
Query: 302 DNRELASGGNDNRLFVWN-QHSTQPVLKYCE------------HTAAVKAIAWSPHLHGL 348
+ R + SGG+D + +++ ++S++ C+ H +V+ + W PH G+
Sbjct: 55 EGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGM 114
Query: 349 LASGGGTADRCIRFWNTTT 367
S + D+ ++ W+T T
Sbjct: 115 FTS--SSFDKTLKVWDTNT 131
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Query: 284 VSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVW--NQHSTQPVLKYCEHTAAVKAIAW 341
V +L H +V G+ W+ D+ + + G D +VW + +P L A + + W
Sbjct: 45 VHELKEHNGQVTGIDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRW 104
Query: 342 SPHLHGLLASGG 353
+P+ G
Sbjct: 105 APNEKKFAVGSG 116
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Query: 284 VSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVW--NQHSTQPVLKYCEHTAAVKAIAW 341
V +L H +V G+ W+ D+ + + G D +VW + +P L A + + W
Sbjct: 45 VHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRW 104
Query: 342 SPHLHGLLASGG 353
+P+ G
Sbjct: 105 APNEKKFAVGSG 116
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 58/126 (46%), Gaps = 4/126 (3%)
Query: 201 KLCDLGI-DDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVXXXXXX 259
KL D+ +D V +++ ++++A ++ KV+IWD++ K V T + H +V
Sbjct: 656 KLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFT 715
Query: 260 XXXXXXXXRDKS---ILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLF 316
S L+ Q++ + + GH + V ++S D+ LAS D L
Sbjct: 716 NKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLR 775
Query: 317 VWNQHS 322
+W+ S
Sbjct: 776 LWDVRS 781
Score = 31.6 bits (70), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Query: 287 LSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHL- 345
+ H+ EV +S D+ +A+ D ++ +W+ + + V Y EH+ V ++
Sbjct: 660 IKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSN 719
Query: 346 HGLLASGGGTADRCIRFWN 364
H LLA+G D ++ W+
Sbjct: 720 HLLLATGSN--DFFLKLWD 736
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 14/91 (15%)
Query: 286 KLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWN------QHSTQPV---LKYCEHTAAV 336
+L GH V +S D LA+G ++ + +WN HS P+ H V
Sbjct: 1129 ELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWV 1188
Query: 337 KAIAWSPHLHGLLASGGGTADRCIRFWNTTT 367
+ +SP L+++GG +++WN T
Sbjct: 1189 TDVCFSPDSKTLVSAGGY-----LKWWNVAT 1214
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 58/126 (46%), Gaps = 4/126 (3%)
Query: 201 KLCDLGI-DDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVXXXXXX 259
KL D+ +D V +++ ++++A ++ KV+IWD++ K V T + H +V
Sbjct: 649 KLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFT 708
Query: 260 XXXXXXXXRDKS---ILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLF 316
S L+ Q++ + + GH + V ++S D+ LAS D L
Sbjct: 709 NKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLR 768
Query: 317 VWNQHS 322
+W+ S
Sbjct: 769 LWDVRS 774
Score = 31.6 bits (70), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Query: 287 LSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHL- 345
+ H+ EV +S D+ +A+ D ++ +W+ + + V Y EH+ V ++
Sbjct: 653 IKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSN 712
Query: 346 HGLLASGGGTADRCIRFWN 364
H LLA+G D ++ W+
Sbjct: 713 HLLLATGSN--DFFLKLWD 729
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 14/91 (15%)
Query: 286 KLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWN------QHSTQPV---LKYCEHTAAV 336
+L GH V +S D LA+G ++ + +WN HS P+ H V
Sbjct: 1122 ELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWV 1181
Query: 337 KAIAWSPHLHGLLASGGGTADRCIRFWNTTT 367
+ +SP L+++GG +++WN T
Sbjct: 1182 TDVCFSPDSKTLVSAGGY-----LKWWNVAT 1207
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 32.0 bits (71), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 61/159 (38%), Gaps = 7/159 (4%)
Query: 199 VTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVXXXXX 258
V+K C DD V +V + T G+ +++WD ++ + + H +V
Sbjct: 118 VSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAA 177
Query: 259 X---XXXXXXXXRDKSILQRDIRAQEDFVSKL--SGHKSEVCGLKWSYDNRELASGGNDN 313
D IL D R + S++ S L W E+ G++N
Sbjct: 178 SPHKDSVFLSCSEDNRILLWDTRCPKP-ASQIGCSAPGYLPTSLAWHPQQSEVFVFGDEN 236
Query: 314 -RLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLAS 351
+ + + ST VL H+ V + +SPH LAS
Sbjct: 237 GTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLAS 275
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 5/91 (5%)
Query: 305 ELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWN 364
+ SG D + VW+ + Y H A V +A SPH + S + D I W+
Sbjct: 141 QAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLS--CSEDNRILLWD 198
Query: 365 TTT---NTHLSCMDTGSQVCNLVWSKNVNEL 392
T + + C G +L W +E+
Sbjct: 199 TRCPKPASQIGCSAPGYLPTSLAWHPQQSEV 229
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 31.6 bits (70), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 31/144 (21%), Positives = 61/144 (42%), Gaps = 3/144 (2%)
Query: 211 VCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRL--RVXXXXXXXXXXXXXXR 268
+ S+ ++ +LA G G + I+D + K + T+EGH + R
Sbjct: 167 ILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASD 226
Query: 269 DKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLK 328
D I D++ + LSGH S V + + D+ S +D + VW+ + V
Sbjct: 227 DGYIKIYDVQ-HANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHT 285
Query: 329 YCEHTAAVKAIAWSPHLHGLLASG 352
+ +H V + ++ + +++ G
Sbjct: 286 FFDHQDQVWGVKYNGNGSKIVSVG 309
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 31.6 bits (70), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 27/140 (19%), Positives = 53/140 (37%), Gaps = 4/140 (2%)
Query: 187 NCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTM 246
N + +W+ K + G D + S + + + ++IWD + + T+
Sbjct: 290 NTLIVWDVAQMKCLYILS-GHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTL 348
Query: 247 EGHRLRVXXXXXXXXXXXXXXRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNREL 306
+GH V D SI D D+ K S H + + + Y + +
Sbjct: 349 QGHTALVGLLRLSDKFLVSAAADGSIRGWD---ANDYSRKFSYHHTNLSAITTFYVSDNI 405
Query: 307 ASGGNDNRLFVWNQHSTQPV 326
G++N+ ++N S + V
Sbjct: 406 LVSGSENQFNIYNLRSGKLV 425
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 46/122 (37%), Gaps = 6/122 (4%)
Query: 243 VRTMEGHRLRVXXXXXXXXXXXXXXRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYD 302
V + GH V D +++ D+ AQ + LSGH + + ++
Sbjct: 263 VGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDV-AQMKCLYILSGHTDRIYSTIYDHE 321
Query: 303 NRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRF 362
+ S D + +W+ + + + HTA V + S L S AD IR
Sbjct: 322 RKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDK---FLVSAA--ADGSIRG 376
Query: 363 WN 364
W+
Sbjct: 377 WD 378
>pdb|3N4J|A Chain A, Putative Rna Methyltransferase From Yersinia Pestis
pdb|3N4K|A Chain A, Putative Rna Methyltransferase From Yersinia Pestis In
Complex With S- Adenosyl-L-Homocysteine.
pdb|3N4K|B Chain B, Putative Rna Methyltransferase From Yersinia Pestis In
Complex With S- Adenosyl-L-Homocysteine
Length = 165
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 8/46 (17%)
Query: 87 ALLRAALFGPETPEKKDVLGPPSGRNIFRFKSETRRSLHSLSPFGF 132
A+L LF PE P P+ NI R + T LH + P GF
Sbjct: 3 AMLNIVLFEPEIP--------PNTGNIIRLCANTGCQLHLIKPLGF 40
>pdb|1JIW|P Chain P, Crystal Structure Of The Apr-Aprin Complex
pdb|1AKL|A Chain A, Alkaline Protease From Pseudomonas Aeruginosa Ifo3080
pdb|3VI1|A Chain A, Crystal Structure Of Pseudomonas Aerginosa Alkaline
Protease Complexed With Substance P(1-6)
pdb|3VI1|B Chain B, Crystal Structure Of Pseudomonas Aerginosa Alkaline
Protease Complexed With Substance P(1-6)
Length = 470
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 25/60 (41%)
Query: 355 TADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKV 414
T D F + T S + S++ VW N+ + G+SQNQ I +S V
Sbjct: 254 TGDTVYGFNSNTERDFYSATSSSSKLVFSVWDAGGNDTLDFSGFSQNQKINLNEKALSDV 313
>pdb|1KAP|P Chain P, Three-Dimensional Structure Of The Alkaline Protease Of
Pseudomonas Aeruginosa: A Two-Domain Protein With A
Calcium Binding Parallel Beta Roll Motif
Length = 479
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 25/60 (41%)
Query: 355 TADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKV 414
T D F + T S + S++ VW N+ + G+SQNQ I +S V
Sbjct: 263 TGDTVYGFNSNTERDFYSATSSSSKLVFSVWDAGGNDTLDFSGFSQNQKINLNEKALSDV 322
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 41/95 (43%), Gaps = 9/95 (9%)
Query: 292 SEVCGLKWSYDNRELASGGNDNRLFVWNQ-HSTQPVLKYCEHTAAVKAIAWSPHLHGLLA 350
++V L WS+D + +G + L +WN+ + VL + H A + ++ W+ +++
Sbjct: 109 NQVTCLAWSHDGNSIVTGVENGELRLWNKTGALLNVLNF--HRAPIVSVKWNKDGTHIIS 166
Query: 351 SGGGTADRCIRFWNTTTNT---HLSCMDTGSQVCN 382
+ WN + T H +TG N
Sbjct: 167 M---DVENVTILWNVISGTVMQHFELKETGGSSIN 198
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 39/88 (44%), Gaps = 4/88 (4%)
Query: 286 KLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHL 345
KL GH + L+++ N+ L S +D L +W+ + + H+ ++ + +W
Sbjct: 242 KLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD 301
Query: 346 HGLLASGGGTADRCIRFWNTTTNTHLSC 373
+ S D +R W+ NT L+
Sbjct: 302 KVISCS----MDGSVRLWSLKQNTLLAL 325
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 45/122 (36%), Gaps = 6/122 (4%)
Query: 243 VRTMEGHRLRVXXXXXXXXXXXXXXRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYD 302
V + GH V D +++ D+ AQ + LSGH + + ++
Sbjct: 263 VGVLRGHXASVRTVSGHGNIVVSGSYDNTLIVWDV-AQXKCLYILSGHTDRIYSTIYDHE 321
Query: 303 NRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRF 362
+ S D + +W+ + + HTA V + S L S AD IR
Sbjct: 322 RKRCISASXDTTIRIWDLENGELXYTLQGHTALVGLLRLSDK---FLVSAA--ADGSIRG 376
Query: 363 WN 364
W+
Sbjct: 377 WD 378
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 28.1 bits (61), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 36/168 (21%), Positives = 62/168 (36%), Gaps = 10/168 (5%)
Query: 184 GLGNCVYLWNAC----SSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDAS- 238
G CV +W+ S V++L L D+ + S L VG + IWD +
Sbjct: 69 GGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAA 128
Query: 239 ---RCKRVRTMEGHRLRVXXXXXXXXXXXXXXRDKSILQRDIRAQEDFVSKLSGHKSEVC 295
R K T D +I D+ Q V + GH
Sbjct: 129 PTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQT-LVRQFQGHTDGAS 187
Query: 296 GLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSP 343
+ S D +L +GG DN + W+ + + ++ + T+ + ++ + P
Sbjct: 188 CIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH-DFTSQIFSLGYCP 234
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Query: 302 DNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIR 361
D + SGG D + VW+ + Y H++ V +A P + S G D I
Sbjct: 150 DGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCG--EDGRIL 207
Query: 362 FWNT 365
W+T
Sbjct: 208 LWDT 211
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 28.1 bits (61), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 37/99 (37%), Gaps = 12/99 (12%)
Query: 273 LQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEH 332
LQR+I H SE+ LK+ L S D +L +W+ H
Sbjct: 130 LQREID---------QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGH 180
Query: 333 TAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHL 371
A V IA +L++ + D IR W T T +
Sbjct: 181 RATVTDIAIIDRGRNVLSA---SLDGTIRLWECGTGTTI 216
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 28.1 bits (61), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 37/99 (37%), Gaps = 12/99 (12%)
Query: 273 LQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEH 332
LQR+I H SE+ LK+ L S D +L +W+ H
Sbjct: 127 LQREID---------QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGH 177
Query: 333 TAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHL 371
A V IA +L++ + D IR W T T +
Sbjct: 178 RATVTDIAIIDRGRNVLSA---SLDGTIRLWECGTGTTI 213
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,255,452
Number of Sequences: 62578
Number of extensions: 548901
Number of successful extensions: 1451
Number of sequences better than 100.0: 88
Number of HSP's better than 100.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 1030
Number of HSP's gapped (non-prelim): 328
length of query: 415
length of database: 14,973,337
effective HSP length: 101
effective length of query: 314
effective length of database: 8,652,959
effective search space: 2717029126
effective search space used: 2717029126
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)