Query 014934
Match_columns 415
No_of_seqs 676 out of 3520
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 01:30:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014934.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014934hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0305 Anaphase promoting com 100.0 6.1E-60 1.3E-64 457.0 35.7 372 41-414 41-424 (484)
2 KOG0271 Notchless-like WD40 re 100.0 1.2E-37 2.6E-42 283.8 23.7 238 167-412 115-442 (480)
3 KOG0271 Notchless-like WD40 re 100.0 1.6E-37 3.5E-42 282.9 22.7 236 167-407 157-479 (480)
4 KOG0272 U4/U6 small nuclear ri 100.0 2.9E-37 6.4E-42 284.5 17.8 235 167-407 217-458 (459)
5 KOG0272 U4/U6 small nuclear ri 100.0 1.8E-36 3.8E-41 279.4 20.6 250 158-414 166-423 (459)
6 KOG0263 Transcription initiati 100.0 1.9E-34 4.1E-39 284.4 24.1 236 169-411 380-651 (707)
7 KOG0286 G-protein beta subunit 100.0 1E-32 2.2E-37 244.1 29.0 246 157-413 49-307 (343)
8 KOG0273 Beta-transducin family 100.0 3.1E-33 6.8E-38 261.0 27.0 242 165-413 233-486 (524)
9 KOG0279 G protein beta subunit 100.0 4.7E-33 1E-37 244.8 26.6 238 170-414 18-267 (315)
10 KOG0279 G protein beta subunit 100.0 1E-32 2.3E-37 242.6 26.8 232 169-409 65-313 (315)
11 KOG0315 G-protein beta subunit 100.0 2.2E-32 4.8E-37 236.9 25.9 242 167-414 40-293 (311)
12 KOG0284 Polyadenylation factor 100.0 1.6E-33 3.5E-38 258.8 14.6 238 166-409 137-380 (464)
13 KOG0295 WD40 repeat-containing 100.0 3.5E-32 7.6E-37 246.9 22.4 242 167-414 108-369 (406)
14 KOG0291 WD40-repeat-containing 100.0 3.4E-31 7.4E-36 259.4 29.3 241 167-414 307-555 (893)
15 KOG0286 G-protein beta subunit 100.0 8.2E-31 1.8E-35 232.0 27.9 232 168-407 98-343 (343)
16 KOG0285 Pleiotropic regulator 100.0 8.9E-31 1.9E-35 237.2 23.8 236 168-412 152-392 (460)
17 KOG0266 WD40 repeat-containing 100.0 5.3E-30 1.1E-34 256.6 30.2 240 167-413 159-413 (456)
18 KOG0284 Polyadenylation factor 100.0 6.1E-32 1.3E-36 248.4 14.3 250 156-412 85-340 (464)
19 PTZ00421 coronin; Provisional 100.0 1.4E-28 3.1E-33 246.2 34.8 241 170-413 25-294 (493)
20 cd00200 WD40 WD40 domain, foun 100.0 2.5E-28 5.5E-33 226.1 32.9 238 168-412 10-252 (289)
21 KOG0277 Peroxisomal targeting 100.0 2.9E-30 6.3E-35 224.4 18.2 235 169-408 62-308 (311)
22 KOG0281 Beta-TrCP (transducin 100.0 2.4E-31 5.1E-36 240.1 11.8 230 169-412 199-431 (499)
23 KOG0273 Beta-transducin family 100.0 5E-29 1.1E-33 233.0 27.4 234 168-409 277-523 (524)
24 KOG0263 Transcription initiati 100.0 8E-30 1.7E-34 251.8 23.1 195 168-367 452-650 (707)
25 KOG0276 Vesicle coat complex C 100.0 1.1E-29 2.4E-34 244.2 23.5 239 169-412 15-260 (794)
26 KOG0266 WD40 repeat-containing 100.0 1.9E-28 4.2E-33 245.3 29.1 242 165-410 201-455 (456)
27 KOG0265 U5 snRNP-specific prot 100.0 1.1E-28 2.3E-33 219.3 23.9 238 168-412 48-299 (338)
28 KOG0645 WD40 repeat protein [G 100.0 6.4E-28 1.4E-32 211.7 27.9 232 169-410 16-262 (312)
29 cd00200 WD40 WD40 domain, foun 100.0 2E-27 4.4E-32 220.1 32.7 232 169-407 53-289 (289)
30 KOG0291 WD40-repeat-containing 100.0 3E-28 6.4E-33 238.8 28.0 236 168-411 351-614 (893)
31 PLN00181 protein SPA1-RELATED; 100.0 1.4E-27 3.1E-32 255.4 35.2 233 168-408 533-792 (793)
32 KOG0316 Conserved WD40 repeat- 100.0 1.9E-28 4.1E-33 211.0 21.7 236 169-414 19-262 (307)
33 KOG0319 WD40-repeat-containing 100.0 1.4E-28 3.1E-33 240.8 22.5 251 146-414 314-582 (775)
34 KOG0315 G-protein beta subunit 100.0 9.2E-28 2E-32 208.3 24.9 221 182-411 15-247 (311)
35 KOG0295 WD40 repeat-containing 100.0 2E-28 4.3E-33 222.6 21.0 232 170-408 153-405 (406)
36 KOG0645 WD40 repeat protein [G 100.0 3.9E-27 8.3E-32 206.8 27.8 231 168-409 62-311 (312)
37 KOG0319 WD40-repeat-containing 100.0 2E-28 4.2E-33 239.8 21.8 236 169-410 367-620 (775)
38 KOG0296 Angio-associated migra 100.0 8.7E-27 1.9E-31 212.0 30.2 233 169-409 66-398 (399)
39 PLN00181 protein SPA1-RELATED; 100.0 1.3E-26 2.8E-31 248.0 35.5 238 166-411 482-740 (793)
40 KOG0277 Peroxisomal targeting 100.0 1.1E-27 2.3E-32 208.5 21.7 238 171-412 12-268 (311)
41 KOG0318 WD40 repeat stress pro 100.0 1E-26 2.2E-31 220.2 29.7 241 167-412 190-563 (603)
42 KOG0276 Vesicle coat complex C 100.0 1.2E-27 2.5E-32 230.4 23.2 229 170-405 58-295 (794)
43 KOG0305 Anaphase promoting com 100.0 2.7E-27 5.8E-32 230.0 24.6 237 167-410 217-462 (484)
44 KOG0274 Cdc4 and related F-box 100.0 2.8E-27 6.1E-32 237.5 25.1 238 167-414 208-446 (537)
45 KOG0282 mRNA splicing factor [ 100.0 3.5E-28 7.5E-33 228.1 16.5 232 169-407 216-503 (503)
46 KOG0285 Pleiotropic regulator 100.0 2.1E-27 4.6E-32 215.3 21.0 232 169-409 195-439 (460)
47 KOG0292 Vesicle coat complex C 100.0 2E-27 4.3E-32 236.3 22.4 237 170-413 12-284 (1202)
48 KOG0281 Beta-TrCP (transducin 100.0 3.9E-28 8.4E-33 219.3 13.7 227 169-411 239-479 (499)
49 PTZ00420 coronin; Provisional 100.0 1.4E-25 3.1E-30 225.9 32.5 221 186-411 53-295 (568)
50 KOG0310 Conserved WD40 repeat- 100.0 8.8E-27 1.9E-31 219.0 20.9 235 169-412 28-271 (487)
51 KOG0310 Conserved WD40 repeat- 99.9 3.1E-26 6.6E-31 215.4 23.3 231 170-408 71-308 (487)
52 KOG0264 Nucleosome remodeling 99.9 3.2E-26 6.8E-31 213.8 22.7 240 167-409 124-404 (422)
53 KOG0292 Vesicle coat complex C 99.9 6.3E-26 1.4E-30 225.7 25.4 238 166-410 50-322 (1202)
54 KOG1446 Histone H3 (Lys4) meth 99.9 1.3E-24 2.8E-29 195.0 29.7 238 168-414 15-267 (311)
55 KOG0318 WD40 repeat stress pro 99.9 5.8E-25 1.2E-29 208.3 28.7 238 167-412 59-353 (603)
56 KOG0274 Cdc4 and related F-box 99.9 3.1E-25 6.7E-30 222.8 26.6 247 153-413 235-486 (537)
57 KOG0275 Conserved WD40 repeat- 99.9 2.8E-26 6.2E-31 205.6 16.6 243 164-412 210-470 (508)
58 KOG1407 WD40 repeat protein [F 99.9 1.3E-24 2.9E-29 189.9 26.0 235 169-410 66-312 (313)
59 KOG0313 Microtubule binding pr 99.9 3.8E-25 8.2E-30 202.2 22.9 234 170-411 147-420 (423)
60 KOG0265 U5 snRNP-specific prot 99.9 6.8E-25 1.5E-29 195.2 22.5 230 169-406 92-335 (338)
61 KOG0640 mRNA cleavage stimulat 99.9 9.1E-26 2E-30 201.4 16.2 204 206-414 110-340 (430)
62 KOG0282 mRNA splicing factor [ 99.9 2.2E-26 4.7E-31 216.1 12.6 201 206-413 212-466 (503)
63 KOG0283 WD40 repeat-containing 99.9 6.3E-25 1.4E-29 218.9 23.8 234 167-411 267-578 (712)
64 PTZ00421 coronin; Provisional 99.9 9.2E-24 2E-28 211.6 31.0 218 168-389 76-315 (493)
65 KOG0289 mRNA splicing factor [ 99.9 1.3E-24 2.8E-29 201.7 22.6 233 169-409 221-460 (506)
66 KOG0293 WD40 repeat-containing 99.9 4.7E-25 1E-29 203.4 19.3 239 167-411 269-515 (519)
67 KOG0647 mRNA export protein (c 99.9 2.3E-24 5.1E-29 191.9 22.7 236 158-399 19-315 (347)
68 KOG1332 Vesicle coat complex C 99.9 1.1E-24 2.5E-29 188.7 19.3 231 175-409 21-286 (299)
69 KOG0316 Conserved WD40 repeat- 99.9 1.5E-24 3.2E-29 187.1 19.6 199 206-413 15-217 (307)
70 KOG0973 Histone transcription 99.9 3.3E-24 7.2E-29 218.7 25.2 240 166-410 12-356 (942)
71 KOG0283 WD40 repeat-containing 99.9 7.3E-25 1.6E-29 218.4 19.7 197 206-410 265-533 (712)
72 KOG0313 Microtubule binding pr 99.9 5.2E-24 1.1E-28 194.8 23.4 238 167-412 105-379 (423)
73 KOG1539 WD repeat protein [Gen 99.9 3.9E-24 8.5E-29 212.2 24.0 227 178-410 412-649 (910)
74 KOG0269 WD40 repeat-containing 99.9 3.2E-25 6.9E-30 218.4 16.2 239 169-410 89-341 (839)
75 KOG0306 WD40-repeat-containing 99.9 4.7E-24 1E-28 209.5 24.1 238 169-414 375-627 (888)
76 KOG0288 WD40 repeat protein Ti 99.9 1.5E-24 3.3E-29 200.2 18.1 230 169-407 221-459 (459)
77 KOG0641 WD40 repeat protein [G 99.9 2.1E-22 4.6E-27 172.8 29.1 250 152-409 74-349 (350)
78 KOG0288 WD40 repeat protein Ti 99.9 5.6E-25 1.2E-29 203.0 14.1 248 150-412 162-420 (459)
79 KOG0264 Nucleosome remodeling 99.9 3.6E-24 7.8E-29 200.1 18.8 192 172-366 182-404 (422)
80 KOG0275 Conserved WD40 repeat- 99.9 3.8E-25 8.3E-30 198.4 11.1 203 201-409 206-423 (508)
81 KOG0643 Translation initiation 99.9 1.1E-22 2.4E-27 178.4 26.2 237 167-410 10-318 (327)
82 KOG0268 Sof1-like rRNA process 99.9 1.5E-24 3.2E-29 197.3 14.7 235 170-414 69-350 (433)
83 KOG0278 Serine/threonine kinas 99.9 2.4E-24 5.2E-29 187.2 14.6 217 185-412 79-300 (334)
84 KOG0646 WD40 repeat protein [G 99.9 1.8E-23 3.9E-28 195.9 21.4 220 169-394 83-336 (476)
85 KOG0269 WD40 repeat-containing 99.9 3.4E-24 7.4E-29 211.2 17.2 237 170-410 42-297 (839)
86 KOG0299 U3 snoRNP-associated p 99.9 3E-23 6.6E-28 194.0 22.0 235 169-411 144-412 (479)
87 KOG0308 Conserved WD40 repeat- 99.9 6.3E-24 1.4E-28 205.7 17.5 228 178-411 37-287 (735)
88 KOG0772 Uncharacterized conser 99.9 2.4E-23 5.1E-28 196.9 20.9 242 167-411 214-489 (641)
89 PTZ00420 coronin; Provisional 99.9 1.9E-22 4E-27 203.5 28.8 183 226-413 50-252 (568)
90 KOG0267 Microtubule severing p 99.9 6.7E-25 1.5E-29 214.6 10.5 224 169-399 30-258 (825)
91 KOG0306 WD40-repeat-containing 99.9 7.2E-23 1.6E-27 201.2 23.6 235 169-410 414-665 (888)
92 KOG0299 U3 snoRNP-associated p 99.9 1.6E-22 3.4E-27 189.3 24.7 231 169-407 204-454 (479)
93 KOG0300 WD40 repeat-containing 99.9 4.5E-23 9.8E-28 184.7 20.2 233 170-410 151-429 (481)
94 KOG1407 WD40 repeat protein [F 99.9 1.9E-22 4.1E-27 176.5 23.2 238 169-414 22-266 (313)
95 KOG0772 Uncharacterized conser 99.9 7.9E-23 1.7E-27 193.4 21.4 261 147-414 151-450 (641)
96 KOG0270 WD40 repeat-containing 99.9 6.2E-23 1.3E-27 191.2 20.4 231 178-412 192-452 (463)
97 KOG0278 Serine/threonine kinas 99.9 9.5E-24 2.1E-28 183.5 13.6 238 168-414 15-259 (334)
98 KOG1408 WD40 repeat protein [F 99.9 5.4E-23 1.2E-27 200.8 20.2 228 178-410 393-714 (1080)
99 KOG0641 WD40 repeat protein [G 99.9 2.9E-21 6.3E-26 165.8 27.4 239 164-409 29-303 (350)
100 KOG0640 mRNA cleavage stimulat 99.9 5.7E-23 1.2E-27 183.6 17.1 236 169-409 174-426 (430)
101 KOG0643 Translation initiation 99.9 6.8E-22 1.5E-26 173.6 23.4 201 206-413 8-224 (327)
102 KOG1274 WD40 repeat protein [G 99.9 8.2E-22 1.8E-26 197.8 25.7 235 169-412 15-265 (933)
103 KOG0294 WD40 repeat-containing 99.9 1.1E-21 2.4E-26 175.9 23.7 231 169-411 45-283 (362)
104 KOG1446 Histone H3 (Lys4) meth 99.9 3.4E-21 7.4E-26 173.1 26.8 232 170-409 59-303 (311)
105 KOG4378 Nuclear protein COP1 [ 99.9 1.7E-22 3.7E-27 190.3 18.7 238 170-413 37-284 (673)
106 KOG0293 WD40 repeat-containing 99.9 5.3E-22 1.1E-26 183.3 21.5 258 144-414 205-475 (519)
107 KOG0302 Ribosome Assembly prot 99.9 6.4E-22 1.4E-26 181.0 21.2 234 170-407 154-436 (440)
108 KOG0301 Phospholipase A2-activ 99.9 9.8E-22 2.1E-26 191.9 23.9 221 173-410 64-289 (745)
109 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.8E-20 3.9E-25 177.1 32.1 236 170-413 33-283 (300)
110 KOG0639 Transducin-like enhanc 99.9 1.9E-22 4E-27 190.3 17.1 245 163-414 415-668 (705)
111 KOG0296 Angio-associated migra 99.9 2.7E-21 5.8E-26 176.4 23.5 201 206-412 62-266 (399)
112 KOG4283 Transcription-coupled 99.9 7.7E-22 1.7E-26 175.3 18.6 202 206-413 41-280 (397)
113 KOG0639 Transducin-like enhanc 99.9 3.2E-22 7E-27 188.7 17.1 247 152-408 452-703 (705)
114 KOG0307 Vesicle coat complex C 99.9 1.2E-22 2.6E-27 208.3 14.7 243 165-412 62-330 (1049)
115 KOG0646 WD40 repeat protein [G 99.9 2E-21 4.4E-26 182.2 21.1 221 186-413 60-311 (476)
116 KOG1036 Mitotic spindle checkp 99.9 8.5E-21 1.8E-25 169.8 23.9 233 169-414 15-267 (323)
117 KOG0308 Conserved WD40 repeat- 99.9 1.1E-21 2.3E-26 190.4 19.4 226 178-410 86-328 (735)
118 KOG2106 Uncharacterized conser 99.9 4.5E-20 9.8E-25 174.5 28.8 233 169-411 202-479 (626)
119 KOG0302 Ribosome Assembly prot 99.9 2.2E-21 4.8E-26 177.5 19.3 199 206-409 149-378 (440)
120 KOG0973 Histone transcription 99.9 1.1E-21 2.4E-26 200.4 18.8 197 208-407 13-251 (942)
121 KOG0270 WD40 repeat-containing 99.9 4.4E-21 9.5E-26 178.9 21.1 229 178-410 137-405 (463)
122 KOG0301 Phospholipase A2-activ 99.9 2.8E-21 6.1E-26 188.7 20.3 232 170-414 17-254 (745)
123 KOG0289 mRNA splicing factor [ 99.9 1.8E-20 3.9E-25 174.3 24.3 234 168-408 262-505 (506)
124 KOG1036 Mitotic spindle checkp 99.9 3.3E-20 7.2E-25 166.1 23.9 226 167-398 54-295 (323)
125 KOG2048 WD40 repeat protein [G 99.9 7.6E-20 1.7E-24 178.4 27.6 236 169-411 27-277 (691)
126 KOG0267 Microtubule severing p 99.9 2.1E-22 4.6E-27 197.2 8.3 215 186-413 13-230 (825)
127 KOG2055 WD40 repeat protein [G 99.9 1.7E-20 3.6E-25 175.7 19.7 238 166-409 256-512 (514)
128 KOG0300 WD40 repeat-containing 99.9 8.3E-21 1.8E-25 170.3 16.5 207 200-413 141-390 (481)
129 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 4.8E-19 1E-23 167.3 29.7 226 179-413 2-241 (300)
130 KOG2445 Nuclear pore complex c 99.9 1.9E-19 4.1E-24 161.1 24.8 235 169-409 15-318 (361)
131 KOG4328 WD40 protein [Function 99.9 3.1E-20 6.6E-25 173.9 20.2 238 169-412 188-453 (498)
132 KOG0294 WD40 repeat-containing 99.9 1.1E-19 2.5E-24 163.0 22.5 196 206-412 41-240 (362)
133 KOG1539 WD repeat protein [Gen 99.9 7.1E-19 1.5E-23 175.1 29.7 242 166-414 159-611 (910)
134 KOG4283 Transcription-coupled 99.9 1.6E-19 3.5E-24 160.6 21.5 235 165-408 99-364 (397)
135 KOG0268 Sof1-like rRNA process 99.8 6.3E-21 1.4E-25 173.8 12.1 199 206-413 64-263 (433)
136 KOG1273 WD40 repeat protein [G 99.8 9.7E-20 2.1E-24 163.4 19.5 237 170-412 26-283 (405)
137 KOG0647 mRNA export protein (c 99.8 1.5E-19 3.2E-24 161.4 20.3 202 206-414 25-286 (347)
138 KOG0303 Actin-binding protein 99.8 3.3E-19 7.2E-24 164.2 23.0 243 166-412 26-297 (472)
139 KOG2096 WD40 repeat protein [G 99.8 1.6E-19 3.5E-24 162.2 20.4 156 206-366 84-308 (420)
140 KOG1332 Vesicle coat complex C 99.8 1.7E-20 3.7E-25 162.9 13.2 203 203-409 6-241 (299)
141 KOG0321 WD40 repeat-containing 99.8 1E-19 2.2E-24 176.4 19.7 231 178-413 64-351 (720)
142 KOG1274 WD40 repeat protein [G 99.8 6.9E-19 1.5E-23 177.0 25.1 220 167-394 56-287 (933)
143 KOG2106 Uncharacterized conser 99.8 2E-18 4.3E-23 163.4 26.5 230 168-411 247-522 (626)
144 KOG0290 Conserved WD40 repeat- 99.8 7.8E-19 1.7E-23 156.0 20.0 239 162-406 91-362 (364)
145 KOG1445 Tumor-specific antigen 99.8 2.5E-19 5.4E-24 173.4 18.2 118 293-414 629-755 (1012)
146 KOG1034 Transcriptional repres 99.8 3.2E-18 7E-23 154.5 24.0 226 178-409 55-383 (385)
147 KOG1408 WD40 repeat protein [F 99.8 8.4E-19 1.8E-23 171.8 21.1 236 172-414 329-676 (1080)
148 KOG1007 WD repeat protein TSSC 99.8 7.5E-19 1.6E-23 156.0 18.2 195 169-366 125-361 (370)
149 KOG4378 Nuclear protein COP1 [ 99.8 3.7E-19 7.9E-24 168.0 16.7 219 165-389 80-305 (673)
150 KOG4328 WD40 protein [Function 99.8 9.1E-19 2E-23 164.0 17.6 199 207-409 185-399 (498)
151 KOG1007 WD repeat protein TSSC 99.8 4.1E-18 8.8E-23 151.4 20.4 220 188-411 94-363 (370)
152 KOG0290 Conserved WD40 repeat- 99.8 1.7E-17 3.7E-22 147.6 20.7 243 167-413 44-322 (364)
153 KOG2048 WD40 repeat protein [G 99.8 3.5E-17 7.7E-22 160.0 24.8 235 165-409 67-319 (691)
154 KOG1587 Cytoplasmic dynein int 99.8 2.2E-17 4.8E-22 165.2 24.0 249 153-410 233-517 (555)
155 KOG1188 WD40 repeat protein [G 99.8 9.2E-18 2E-22 152.3 16.8 188 221-413 41-246 (376)
156 KOG1188 WD40 repeat protein [G 99.8 1.1E-17 2.4E-22 151.8 17.1 187 179-368 41-244 (376)
157 KOG2110 Uncharacterized conser 99.8 4.8E-16 1E-20 142.6 27.5 229 170-410 8-249 (391)
158 KOG1009 Chromatin assembly com 99.8 4.8E-17 1E-21 150.6 20.9 237 169-411 15-374 (434)
159 KOG1063 RNA polymerase II elon 99.8 1.1E-16 2.4E-21 156.7 24.3 246 161-411 261-650 (764)
160 COG2319 FOG: WD40 repeat [Gene 99.8 2.1E-15 4.5E-20 146.6 33.2 239 167-412 65-317 (466)
161 KOG1273 WD40 repeat protein [G 99.8 5.6E-17 1.2E-21 145.7 20.0 191 211-410 26-227 (405)
162 KOG0307 Vesicle coat complex C 99.8 2.1E-18 4.5E-23 177.4 11.7 199 169-369 118-330 (1049)
163 KOG1445 Tumor-specific antigen 99.8 1.2E-17 2.5E-22 161.9 15.4 229 179-409 592-844 (1012)
164 KOG0321 WD40 repeat-containing 99.8 6E-17 1.3E-21 157.4 20.1 238 169-410 102-392 (720)
165 KOG2919 Guanine nucleotide-bin 99.8 1.8E-16 4E-21 142.9 21.4 236 170-410 52-328 (406)
166 COG2319 FOG: WD40 repeat [Gene 99.8 4.5E-15 9.7E-20 144.3 32.9 240 168-413 156-404 (466)
167 KOG0303 Actin-binding protein 99.7 4.9E-17 1.1E-21 150.0 16.7 164 244-413 75-253 (472)
168 KOG2445 Nuclear pore complex c 99.7 4.3E-16 9.2E-21 139.8 22.1 204 202-410 7-257 (361)
169 KOG2055 WD40 repeat protein [G 99.7 1.2E-16 2.5E-21 150.1 19.3 197 208-410 213-418 (514)
170 KOG2919 Guanine nucleotide-bin 99.7 7.3E-17 1.6E-21 145.5 17.1 215 178-397 123-360 (406)
171 KOG0650 WD40 repeat nucleolar 99.7 1.5E-16 3.3E-21 153.5 18.5 229 169-406 402-732 (733)
172 KOG0649 WD40 repeat protein [G 99.7 5.9E-16 1.3E-20 134.7 19.9 195 210-413 12-239 (325)
173 KOG0642 Cell-cycle nuclear pro 99.7 9.9E-17 2.1E-21 154.1 15.8 202 206-412 292-564 (577)
174 KOG1538 Uncharacterized conser 99.7 1.3E-15 2.8E-20 148.7 23.3 233 169-409 14-293 (1081)
175 KOG1587 Cytoplasmic dynein int 99.7 7.4E-16 1.6E-20 154.3 21.7 219 187-410 222-473 (555)
176 KOG1063 RNA polymerase II elon 99.7 1.7E-16 3.7E-21 155.5 16.6 200 206-409 523-763 (764)
177 KOG0322 G-protein beta subunit 99.7 4.2E-16 9E-21 137.1 16.7 247 152-408 3-322 (323)
178 PRK11028 6-phosphogluconolacto 99.7 1.3E-14 2.9E-19 139.9 29.0 235 170-409 37-304 (330)
179 KOG0650 WD40 repeat nucleolar 99.7 1E-15 2.2E-20 147.9 20.4 198 206-411 398-639 (733)
180 KOG0644 Uncharacterized conser 99.7 4E-17 8.6E-22 162.6 9.7 235 170-411 193-470 (1113)
181 KOG0649 WD40 repeat protein [G 99.7 9E-15 2E-19 127.4 23.0 224 172-409 15-274 (325)
182 KOG1524 WD40 repeat-containing 99.7 4E-16 8.6E-21 148.9 15.9 203 179-405 77-282 (737)
183 KOG1310 WD40 repeat protein [G 99.7 4.5E-16 9.7E-21 148.9 14.8 204 206-413 48-307 (758)
184 KOG2139 WD40 repeat protein [G 99.7 8.1E-15 1.8E-19 134.2 21.2 222 167-396 98-364 (445)
185 KOG0642 Cell-cycle nuclear pro 99.7 1E-15 2.3E-20 147.1 15.8 205 167-374 294-569 (577)
186 KOG2111 Uncharacterized conser 99.7 5.7E-14 1.2E-18 126.9 24.7 231 172-410 10-257 (346)
187 KOG2096 WD40 repeat protein [G 99.7 6.5E-15 1.4E-19 132.8 18.6 181 178-365 199-401 (420)
188 KOG1517 Guanine nucleotide bin 99.7 8.3E-15 1.8E-19 149.6 21.0 226 179-411 1125-1383(1387)
189 KOG1009 Chromatin assembly com 99.7 1.6E-15 3.5E-20 140.6 14.4 185 208-395 13-248 (434)
190 PRK11028 6-phosphogluconolacto 99.7 7.2E-14 1.6E-18 134.8 26.6 225 181-411 6-260 (330)
191 KOG1523 Actin-related protein 99.6 8.5E-15 1.8E-19 132.2 17.5 200 208-412 10-239 (361)
192 PRK01742 tolB translocation pr 99.6 2.1E-14 4.5E-19 143.4 22.4 205 187-408 184-400 (429)
193 KOG1517 Guanine nucleotide bin 99.6 6E-14 1.3E-18 143.4 24.7 236 170-410 1067-1334(1387)
194 KOG1034 Transcriptional repres 99.6 2.1E-15 4.4E-20 136.5 12.5 198 166-366 134-383 (385)
195 KOG1310 WD40 repeat protein [G 99.6 3.8E-15 8.3E-20 142.6 15.0 206 165-373 48-310 (758)
196 KOG2394 WD40 protein DMR-N9 [G 99.6 2E-14 4.4E-19 137.6 19.8 206 178-387 135-384 (636)
197 PF08662 eIF2A: Eukaryotic tra 99.6 4.5E-14 9.7E-19 125.2 20.3 138 271-413 38-182 (194)
198 PRK05137 tolB translocation pr 99.6 4E-13 8.6E-18 134.5 29.5 217 188-411 183-414 (435)
199 KOG2110 Uncharacterized conser 99.6 1.5E-12 3.4E-17 119.8 30.2 195 164-367 43-249 (391)
200 KOG1523 Actin-related protein 99.6 6.3E-14 1.4E-18 126.6 19.2 223 169-394 12-266 (361)
201 KOG3881 Uncharacterized conser 99.6 5.6E-14 1.2E-18 130.0 19.0 211 175-391 113-345 (412)
202 KOG1272 WD40-repeat-containing 99.6 2.4E-15 5.1E-20 141.6 9.7 228 167-407 129-360 (545)
203 KOG1963 WD40 repeat protein [G 99.6 2.2E-13 4.7E-18 137.4 24.0 234 173-413 22-326 (792)
204 PRK04922 tolB translocation pr 99.6 5.6E-13 1.2E-17 133.4 26.6 216 188-410 185-412 (433)
205 KOG1524 WD40 repeat-containing 99.6 3.2E-14 6.9E-19 136.1 16.5 216 171-393 18-243 (737)
206 PRK03629 tolB translocation pr 99.6 8.9E-13 1.9E-17 131.5 27.8 214 188-410 180-407 (429)
207 KOG4227 WD40 repeat protein [G 99.6 1.2E-13 2.6E-18 127.7 19.4 159 206-367 54-226 (609)
208 KOG4227 WD40 repeat protein [G 99.6 3E-13 6.5E-18 125.0 21.9 235 167-408 56-386 (609)
209 KOG1963 WD40 repeat protein [G 99.6 4.4E-13 9.5E-18 135.3 24.5 237 167-411 205-540 (792)
210 KOG0771 Prolactin regulatory e 99.6 4.6E-14 1E-18 131.8 15.3 192 212-410 148-355 (398)
211 PRK01742 tolB translocation pr 99.6 1.5E-13 3.3E-18 137.2 19.8 208 169-388 205-426 (429)
212 KOG2394 WD40 protein DMR-N9 [G 99.6 3.9E-14 8.4E-19 135.6 14.4 163 180-343 187-384 (636)
213 PF02239 Cytochrom_D1: Cytochr 99.6 4.7E-12 1E-16 123.2 29.0 238 172-414 41-352 (369)
214 KOG1538 Uncharacterized conser 99.6 2.6E-13 5.7E-18 132.7 19.8 191 210-407 14-250 (1081)
215 KOG1272 WD40-repeat-containing 99.6 4E-15 8.7E-20 140.0 6.9 215 172-396 175-398 (545)
216 KOG0644 Uncharacterized conser 99.6 6.7E-15 1.4E-19 147.0 7.9 201 206-413 188-430 (1113)
217 KOG0771 Prolactin regulatory e 99.6 9.2E-14 2E-18 129.8 15.0 191 171-366 148-354 (398)
218 KOG0322 G-protein beta subunit 99.5 6.6E-14 1.4E-18 123.4 12.2 155 208-365 150-322 (323)
219 KOG1240 Protein kinase contain 99.5 2.3E-12 4.9E-17 134.0 24.9 257 154-412 1035-1337(1431)
220 PRK02889 tolB translocation pr 99.5 3.2E-12 7E-17 127.5 24.5 216 187-408 176-402 (427)
221 PF08662 eIF2A: Eukaryotic tra 99.5 1.7E-12 3.8E-17 115.1 20.1 157 212-375 9-187 (194)
222 KOG2111 Uncharacterized conser 99.5 7.3E-12 1.6E-16 113.4 23.7 173 187-367 75-257 (346)
223 KOG2139 WD40 repeat protein [G 99.5 1.7E-12 3.8E-17 119.1 19.7 183 208-396 98-299 (445)
224 PRK03629 tolB translocation pr 99.5 6.9E-12 1.5E-16 125.2 25.2 212 169-388 200-428 (429)
225 PRK04922 tolB translocation pr 99.5 7.6E-12 1.6E-16 125.2 23.9 211 169-387 205-432 (433)
226 TIGR02800 propeller_TolB tol-p 99.5 2.9E-11 6.2E-16 120.5 26.8 215 187-409 170-397 (417)
227 KOG2315 Predicted translation 99.5 1.2E-11 2.6E-16 119.5 22.7 232 170-409 37-390 (566)
228 PRK05137 tolB translocation pr 99.5 1.9E-11 4E-16 122.5 25.3 212 169-388 203-433 (435)
229 PRK02889 tolB translocation pr 99.5 1.2E-11 2.7E-16 123.4 23.0 211 170-388 198-425 (427)
230 KOG2321 WD40 repeat protein [G 99.4 1.4E-11 2.9E-16 119.3 21.2 183 223-412 148-346 (703)
231 KOG4547 WD40 repeat-containing 99.4 2.6E-11 5.7E-16 117.9 23.2 185 178-367 5-221 (541)
232 PRK00178 tolB translocation pr 99.4 8.2E-11 1.8E-15 117.7 27.3 215 188-410 180-407 (430)
233 PRK01029 tolB translocation pr 99.4 6.3E-11 1.4E-15 118.0 25.7 215 172-389 189-426 (428)
234 KOG4497 Uncharacterized conser 99.4 1.2E-12 2.7E-17 118.7 11.1 218 173-408 14-239 (447)
235 KOG3881 Uncharacterized conser 99.4 4.5E-11 9.8E-16 110.9 20.4 232 170-410 58-321 (412)
236 PRK04792 tolB translocation pr 99.4 3.2E-10 6.8E-15 113.8 28.2 213 188-410 199-426 (448)
237 KOG1334 WD40 repeat protein [G 99.4 2.4E-12 5.2E-17 122.2 11.8 238 168-410 143-467 (559)
238 KOG0280 Uncharacterized conser 99.4 2.7E-11 5.9E-16 108.6 17.5 222 185-411 93-335 (339)
239 PRK01029 tolB translocation pr 99.4 3.4E-10 7.5E-15 112.7 27.3 222 188-412 166-406 (428)
240 PF02239 Cytochrom_D1: Cytochr 99.4 1.3E-09 2.8E-14 106.2 30.6 231 178-413 5-306 (369)
241 KOG1240 Protein kinase contain 99.4 3.4E-11 7.5E-16 125.3 20.0 215 192-412 1034-1276(1431)
242 KOG0974 WD-repeat protein WDR6 99.4 3.2E-11 6.9E-16 124.0 17.9 192 209-410 88-289 (967)
243 KOG2321 WD40 repeat protein [G 99.3 2.9E-11 6.3E-16 117.0 15.9 183 178-366 146-343 (703)
244 TIGR02658 TTQ_MADH_Hv methylam 99.3 3.1E-09 6.8E-14 101.6 29.8 226 186-414 76-335 (352)
245 KOG1409 Uncharacterized conser 99.3 1.3E-10 2.8E-15 106.3 18.7 186 178-366 37-270 (404)
246 KOG4547 WD40 repeat-containing 99.3 2.1E-10 4.5E-15 111.7 20.9 186 218-410 3-221 (541)
247 KOG0974 WD-repeat protein WDR6 99.3 4.8E-11 1E-15 122.7 17.2 182 178-367 100-289 (967)
248 TIGR02800 propeller_TolB tol-p 99.3 5.7E-10 1.2E-14 111.1 24.2 208 170-385 192-416 (417)
249 PRK00178 tolB translocation pr 99.3 9E-10 1.9E-14 110.3 25.6 212 169-388 200-428 (430)
250 KOG4497 Uncharacterized conser 99.3 6.1E-10 1.3E-14 101.4 20.7 233 170-409 51-391 (447)
251 KOG0280 Uncharacterized conser 99.3 4E-10 8.6E-15 101.2 19.1 202 187-390 46-266 (339)
252 PF10282 Lactonase: Lactonase, 99.3 1.3E-08 2.9E-13 98.7 31.1 236 171-409 40-322 (345)
253 KOG1064 RAVE (regulator of V-A 99.3 2.5E-11 5.5E-16 130.2 12.1 192 170-375 2211-2407(2439)
254 PRK04792 tolB translocation pr 99.3 1.3E-09 2.9E-14 109.3 23.1 210 169-388 219-447 (448)
255 KOG1912 WD40 repeat protein [G 99.2 9.3E-10 2E-14 110.1 20.8 234 170-410 18-305 (1062)
256 KOG1334 WD40 repeat protein [G 99.2 1.4E-10 3E-15 110.4 12.4 198 206-407 140-364 (559)
257 PF15492 Nbas_N: Neuroblastoma 99.2 5.8E-08 1.2E-12 87.6 27.5 221 178-413 9-263 (282)
258 PLN02919 haloacid dehalogenase 99.2 4.6E-08 1E-12 107.2 32.6 233 171-412 571-891 (1057)
259 COG5354 Uncharacterized protei 99.2 4.2E-09 9.2E-14 101.1 20.7 239 167-410 32-307 (561)
260 PF10282 Lactonase: Lactonase, 99.2 8.4E-08 1.8E-12 93.1 30.3 220 187-409 13-275 (345)
261 KOG1064 RAVE (regulator of V-A 99.1 3E-10 6.4E-15 122.2 12.4 184 208-411 2208-2400(2439)
262 KOG1354 Serine/threonine prote 99.1 6.5E-10 1.4E-14 101.8 12.7 197 207-409 24-301 (433)
263 KOG1354 Serine/threonine prote 99.1 8E-09 1.7E-13 94.8 17.8 236 169-412 27-362 (433)
264 PF13360 PQQ_2: PQQ-like domai 99.1 1.5E-07 3.3E-12 85.9 26.0 219 186-414 2-235 (238)
265 KOG0309 Conserved WD40 repeat- 99.1 1.4E-09 3.1E-14 108.2 12.8 239 169-409 26-277 (1081)
266 COG5354 Uncharacterized protei 99.1 4.5E-08 9.7E-13 94.2 21.8 233 172-410 136-396 (561)
267 COG4946 Uncharacterized protei 99.1 1.1E-07 2.5E-12 90.7 24.2 212 178-395 278-506 (668)
268 PF08450 SGL: SMP-30/Gluconola 99.0 1.7E-06 3.7E-11 79.8 30.9 212 172-396 4-244 (246)
269 KOG1409 Uncharacterized conser 99.0 1.5E-08 3.1E-13 93.1 16.0 83 240-322 187-271 (404)
270 COG2706 3-carboxymuconate cycl 99.0 6.5E-07 1.4E-11 83.2 27.1 222 186-410 15-275 (346)
271 COG4946 Uncharacterized protei 99.0 2.5E-07 5.4E-12 88.4 24.7 146 175-325 329-481 (668)
272 KOG4532 WD40-like repeat conta 99.0 1.5E-07 3.2E-12 84.0 21.5 226 179-410 85-332 (344)
273 KOG0309 Conserved WD40 repeat- 99.0 3.5E-09 7.7E-14 105.4 12.5 238 169-410 69-340 (1081)
274 KOG3914 WD repeat protein WDR4 99.0 8.1E-09 1.8E-13 96.6 13.5 158 211-375 65-232 (390)
275 PRK04043 tolB translocation pr 99.0 9.5E-07 2.1E-11 87.7 28.9 214 187-410 169-401 (419)
276 PRK04043 tolB translocation pr 98.9 5.6E-07 1.2E-11 89.4 24.9 191 170-369 190-403 (419)
277 KOG2314 Translation initiation 98.9 5.2E-07 1.1E-11 87.7 22.3 237 169-409 251-525 (698)
278 KOG2041 WD40 repeat protein [G 98.9 5E-08 1.1E-12 97.1 15.7 226 164-395 11-276 (1189)
279 TIGR03300 assembly_YfgL outer 98.9 1.1E-06 2.5E-11 86.3 24.9 222 178-413 66-301 (377)
280 KOG1275 PAB-dependent poly(A) 98.9 5.9E-08 1.3E-12 99.1 15.7 181 219-407 146-340 (1118)
281 KOG2695 WD40 repeat protein [G 98.9 1E-08 2.3E-13 94.1 9.1 167 214-387 217-402 (425)
282 TIGR03300 assembly_YfgL outer 98.9 8.4E-07 1.8E-11 87.2 23.5 221 178-414 106-343 (377)
283 COG5170 CDC55 Serine/threonine 98.8 3.4E-08 7.3E-13 89.6 11.6 201 206-412 24-312 (460)
284 COG2706 3-carboxymuconate cycl 98.8 1.2E-05 2.7E-10 74.9 28.5 237 170-410 42-322 (346)
285 KOG4190 Uncharacterized conser 98.8 1.2E-08 2.7E-13 98.6 8.9 165 243-412 728-909 (1034)
286 PF04762 IKI3: IKI3 family; I 98.8 2E-06 4.2E-11 93.0 26.6 195 210-410 211-457 (928)
287 PF07433 DUF1513: Protein of u 98.8 1.5E-05 3.3E-10 74.1 28.6 215 173-394 10-273 (305)
288 PLN02919 haloacid dehalogenase 98.8 2.4E-06 5.3E-11 93.9 27.3 197 170-370 626-892 (1057)
289 KOG3914 WD repeat protein WDR4 98.8 8E-08 1.7E-12 90.0 13.3 159 170-330 65-232 (390)
290 KOG1832 HIV-1 Vpr-binding prot 98.8 3.3E-09 7.2E-14 107.5 3.5 188 206-412 1099-1294(1516)
291 TIGR02658 TTQ_MADH_Hv methylam 98.8 1.1E-05 2.3E-10 77.6 26.8 217 187-414 27-292 (352)
292 KOG1275 PAB-dependent poly(A) 98.8 2E-07 4.4E-12 95.3 15.5 183 175-365 145-341 (1118)
293 KOG2315 Predicted translation 98.8 1.6E-06 3.5E-11 84.5 20.7 212 170-389 168-412 (566)
294 KOG4532 WD40-like repeat conta 98.7 2E-06 4.4E-11 76.8 19.5 186 219-412 83-285 (344)
295 KOG4190 Uncharacterized conser 98.7 2.7E-08 5.8E-13 96.4 7.9 172 200-375 726-915 (1034)
296 KOG2695 WD40 repeat protein [G 98.7 3.1E-08 6.7E-13 91.0 7.8 165 174-342 218-401 (425)
297 KOG4714 Nucleoporin [Nuclear s 98.7 1.8E-07 3.9E-12 83.0 10.9 143 179-322 103-255 (319)
298 PF04762 IKI3: IKI3 family; I 98.7 3.7E-06 7.9E-11 91.0 22.6 232 169-410 77-334 (928)
299 KOG2314 Translation initiation 98.6 7.7E-06 1.7E-10 79.8 20.7 234 172-409 310-573 (698)
300 KOG1832 HIV-1 Vpr-binding prot 98.6 3.1E-08 6.7E-13 100.7 4.3 207 168-394 1102-1318(1516)
301 KOG2041 WD40 repeat protein [G 98.6 7.3E-07 1.6E-11 89.1 13.7 196 206-407 12-245 (1189)
302 KOG2066 Vacuolar assembly/sort 98.6 2.6E-06 5.6E-11 86.4 17.5 178 169-366 41-233 (846)
303 KOG1645 RING-finger-containing 98.6 1.2E-06 2.7E-11 82.2 13.7 217 189-413 175-423 (463)
304 KOG1008 Uncharacterized conser 98.6 1.8E-08 3.9E-13 99.3 1.5 199 164-366 53-275 (783)
305 PF13360 PQQ_2: PQQ-like domai 98.6 6.3E-05 1.4E-09 68.6 24.7 185 178-373 37-237 (238)
306 PF00400 WD40: WD domain, G-be 98.5 2.9E-07 6.3E-12 58.7 6.3 37 283-319 3-39 (39)
307 PF08450 SGL: SMP-30/Gluconola 98.5 4.1E-05 8.9E-10 70.5 23.1 181 170-353 42-245 (246)
308 PRK11138 outer membrane biogen 98.5 2.2E-05 4.8E-10 77.7 22.5 217 179-409 162-394 (394)
309 PRK11138 outer membrane biogen 98.5 1.8E-05 4E-10 78.2 21.7 225 178-413 70-316 (394)
310 KOG4714 Nucleoporin [Nuclear s 98.5 6.4E-07 1.4E-11 79.6 9.9 147 260-410 101-255 (319)
311 KOG1912 WD40 repeat protein [G 98.5 2.5E-06 5.3E-11 86.1 14.7 152 209-365 16-185 (1062)
312 KOG0882 Cyclophilin-related pe 98.5 1.8E-06 3.9E-11 82.1 12.9 229 178-412 21-308 (558)
313 KOG2066 Vacuolar assembly/sort 98.5 6.3E-06 1.4E-10 83.7 17.2 180 208-409 39-233 (846)
314 COG5170 CDC55 Serine/threonine 98.5 9.7E-06 2.1E-10 73.9 16.1 233 169-407 28-365 (460)
315 KOG1920 IkappaB kinase complex 98.4 3.1E-05 6.7E-10 82.1 20.7 235 169-410 70-323 (1265)
316 PF06977 SdiA-regulated: SdiA- 98.4 0.00031 6.8E-09 64.3 24.9 194 206-406 19-247 (248)
317 KOG3617 WD40 and TPR repeat-co 98.4 1.1E-05 2.3E-10 82.3 15.5 106 170-278 18-131 (1416)
318 PF06433 Me-amine-dh_H: Methyl 98.3 0.00036 7.8E-09 65.9 24.1 226 188-414 68-325 (342)
319 PF04053 Coatomer_WDAD: Coatom 98.3 0.00017 3.7E-09 71.8 23.2 219 167-409 32-262 (443)
320 PF03178 CPSF_A: CPSF A subuni 98.3 0.00027 6E-09 67.8 23.9 210 187-405 2-261 (321)
321 PF00400 WD40: WD domain, G-be 98.3 1.9E-06 4.2E-11 54.8 5.8 38 324-364 2-39 (39)
322 PF07433 DUF1513: Protein of u 98.3 0.0013 2.9E-08 61.4 25.6 199 209-413 5-251 (305)
323 KOG1645 RING-finger-containing 98.3 5.7E-05 1.2E-09 71.3 16.3 235 167-410 193-462 (463)
324 KOG2114 Vacuolar assembly/sort 98.2 0.00016 3.5E-09 74.3 20.6 190 215-411 30-245 (933)
325 PF00930 DPPIV_N: Dipeptidyl p 98.2 0.00063 1.4E-08 66.3 24.4 228 169-397 44-347 (353)
326 PF04841 Vps16_N: Vps16, N-ter 98.2 0.0013 2.9E-08 65.2 26.1 210 173-392 34-274 (410)
327 PF08596 Lgl_C: Lethal giant l 98.2 0.00055 1.2E-08 67.3 22.6 199 210-414 3-295 (395)
328 PRK02888 nitrous-oxide reducta 98.1 0.00053 1.2E-08 69.7 21.7 199 186-395 214-449 (635)
329 KOG3621 WD40 repeat-containing 98.1 0.00068 1.5E-08 68.5 21.9 110 169-279 37-155 (726)
330 KOG2114 Vacuolar assembly/sort 98.1 0.00084 1.8E-08 69.2 22.8 213 175-394 31-270 (933)
331 KOG1008 Uncharacterized conser 98.1 1E-06 2.2E-11 87.2 1.9 197 208-409 56-275 (783)
332 PRK02888 nitrous-oxide reducta 98.1 0.00064 1.4E-08 69.1 21.7 105 300-410 285-405 (635)
333 PF08553 VID27: VID27 cytoplas 98.1 0.00026 5.5E-09 74.4 18.7 134 228-366 502-647 (794)
334 PF15492 Nbas_N: Neuroblastoma 98.1 0.0016 3.5E-08 59.3 21.1 191 171-375 47-268 (282)
335 PF11768 DUF3312: Protein of u 98.1 0.0002 4.3E-09 71.1 16.6 131 188-321 185-329 (545)
336 COG0823 TolB Periplasmic compo 98.1 0.00034 7.4E-09 69.4 18.3 203 188-398 174-390 (425)
337 cd00216 PQQ_DH Dehydrogenases 98.0 0.0026 5.7E-08 64.7 24.9 230 178-414 111-429 (488)
338 PF06977 SdiA-regulated: SdiA- 98.0 0.0065 1.4E-07 55.7 24.2 194 162-363 18-247 (248)
339 KOG0882 Cyclophilin-related pe 98.0 7.3E-05 1.6E-09 71.5 11.6 201 206-413 7-235 (558)
340 PF11768 DUF3312: Protein of u 98.0 0.00024 5.2E-09 70.6 14.9 91 189-281 238-332 (545)
341 cd00216 PQQ_DH Dehydrogenases 97.9 0.004 8.6E-08 63.4 23.4 194 179-375 63-328 (488)
342 COG3386 Gluconolactonase [Carb 97.9 0.009 1.9E-07 56.7 23.5 215 174-399 31-277 (307)
343 KOG4649 PQQ (pyrrolo-quinoline 97.9 0.005 1.1E-07 55.4 20.2 131 220-352 23-154 (354)
344 PF08553 VID27: VID27 cytoplas 97.9 0.00095 2E-08 70.3 18.3 133 186-320 503-646 (794)
345 PF00780 CNH: CNH domain; Int 97.8 0.022 4.8E-07 53.1 26.0 216 178-413 7-259 (275)
346 PF08596 Lgl_C: Lethal giant l 97.8 0.0059 1.3E-07 60.1 22.2 185 208-395 86-324 (395)
347 PF02897 Peptidase_S9_N: Proly 97.8 0.043 9.3E-07 54.6 28.8 257 155-413 108-408 (414)
348 COG3391 Uncharacterized conser 97.8 0.022 4.8E-07 56.0 26.1 215 168-388 74-309 (381)
349 PF03178 CPSF_A: CPSF A subuni 97.8 0.0023 4.9E-08 61.5 18.7 141 178-321 42-202 (321)
350 PF04053 Coatomer_WDAD: Coatom 97.7 0.0014 3E-08 65.4 16.3 162 208-388 32-207 (443)
351 PF05096 Glu_cyclase_2: Glutam 97.7 0.026 5.6E-07 51.8 22.4 193 156-352 33-249 (264)
352 KOG3621 WD40 repeat-containing 97.7 0.0007 1.5E-08 68.4 13.2 143 208-352 33-187 (726)
353 COG3391 Uncharacterized conser 97.7 0.046 1E-06 53.8 26.1 216 189-411 13-241 (381)
354 PF14783 BBS2_Mid: Ciliary BBS 97.6 0.0043 9.3E-08 48.9 14.3 101 294-405 2-110 (111)
355 KOG3617 WD40 and TPR repeat-co 97.6 0.0014 3.1E-08 67.4 14.6 69 169-238 61-131 (1416)
356 KOG1920 IkappaB kinase complex 97.6 0.0032 7E-08 67.4 17.5 133 212-347 199-348 (1265)
357 KOG4649 PQQ (pyrrolo-quinoline 97.6 0.028 6.2E-07 50.7 20.8 140 179-322 24-166 (354)
358 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.6 0.053 1.1E-06 55.7 25.9 235 177-414 120-495 (527)
359 PF00930 DPPIV_N: Dipeptidyl p 97.6 0.011 2.4E-07 57.5 20.0 205 186-395 22-298 (353)
360 COG0823 TolB Periplasmic compo 97.6 0.0074 1.6E-07 60.0 18.7 178 170-353 195-389 (425)
361 PF02897 Peptidase_S9_N: Proly 97.5 0.09 1.9E-06 52.3 26.2 196 211-409 126-357 (414)
362 PF14655 RAB3GAP2_N: Rab3 GTPa 97.5 0.06 1.3E-06 53.0 23.7 80 332-414 306-403 (415)
363 KOG4640 Anaphase-promoting com 97.4 0.00081 1.8E-08 67.2 9.7 93 291-387 20-115 (665)
364 KOG4441 Proteins containing BT 97.4 0.011 2.5E-07 61.1 18.7 215 187-410 301-547 (571)
365 PHA02713 hypothetical protein; 97.4 0.015 3.4E-07 60.1 19.2 212 188-410 273-534 (557)
366 KOG2395 Protein involved in va 97.3 0.0035 7.6E-08 61.7 12.8 138 223-366 349-500 (644)
367 PF06433 Me-amine-dh_H: Methyl 97.3 0.11 2.4E-06 49.4 22.3 199 171-376 98-330 (342)
368 smart00320 WD40 WD40 repeats. 97.3 0.00057 1.2E-08 41.5 5.0 37 283-319 4-40 (40)
369 PF14583 Pectate_lyase22: Olig 97.3 0.2 4.4E-06 48.5 24.9 222 169-394 37-299 (386)
370 PF04841 Vps16_N: Vps16, N-ter 97.3 0.096 2.1E-06 52.1 22.6 182 169-365 82-286 (410)
371 PF14783 BBS2_Mid: Ciliary BBS 97.3 0.027 5.9E-07 44.4 14.5 100 211-317 2-110 (111)
372 KOG4640 Anaphase-promoting com 97.2 0.0018 4E-08 64.8 9.3 92 209-301 21-115 (665)
373 KOG2079 Vacuolar assembly/sort 97.1 0.0023 5.1E-08 67.6 9.0 112 249-365 88-202 (1206)
374 KOG3630 Nuclear pore complex, 97.1 0.0067 1.5E-07 64.6 12.2 143 209-353 101-263 (1405)
375 PHA02713 hypothetical protein; 97.0 0.031 6.7E-07 57.9 17.1 174 188-370 321-537 (557)
376 smart00320 WD40 WD40 repeats. 97.0 0.0021 4.6E-08 38.8 5.5 31 206-236 10-40 (40)
377 PF05096 Glu_cyclase_2: Glutam 97.0 0.28 6.2E-06 45.0 25.0 190 199-397 35-249 (264)
378 KOG2395 Protein involved in va 97.0 0.017 3.6E-07 57.1 13.3 131 186-320 355-499 (644)
379 COG3204 Uncharacterized protei 96.9 0.33 7.2E-06 44.9 21.0 186 206-394 83-300 (316)
380 PRK10115 protease 2; Provision 96.9 0.84 1.8E-05 48.6 30.1 247 155-411 111-396 (686)
381 PF00780 CNH: CNH domain; Int 96.9 0.39 8.4E-06 44.7 24.2 193 170-377 38-266 (275)
382 PRK13616 lipoprotein LpqB; Pro 96.9 0.3 6.5E-06 50.8 22.4 180 209-402 350-561 (591)
383 KOG1897 Damage-specific DNA bi 96.8 0.28 6.1E-06 52.1 21.6 209 188-405 751-1000(1096)
384 KOG2444 WD40 repeat protein [G 96.8 0.0017 3.7E-08 57.4 4.7 139 226-366 36-177 (238)
385 KOG4441 Proteins containing BT 96.8 0.071 1.5E-06 55.3 17.1 191 172-369 327-549 (571)
386 TIGR03075 PQQ_enz_alc_DH PQQ-d 96.7 0.61 1.3E-05 48.0 23.1 191 220-414 69-338 (527)
387 PF05694 SBP56: 56kDa selenium 96.6 0.81 1.8E-05 45.0 21.7 214 180-396 90-392 (461)
388 PF14870 PSII_BNR: Photosynthe 96.6 0.7 1.5E-05 43.7 27.0 226 167-406 61-301 (302)
389 KOG2079 Vacuolar assembly/sort 96.5 0.0063 1.4E-07 64.5 7.1 93 179-272 100-199 (1206)
390 PF12894 Apc4_WD40: Anaphase-p 96.5 0.011 2.5E-07 39.0 5.9 33 208-241 11-43 (47)
391 TIGR03074 PQQ_membr_DH membran 96.5 1.3 2.9E-05 47.4 24.5 194 179-375 195-486 (764)
392 COG3386 Gluconolactonase [Carb 96.5 0.38 8.3E-06 45.7 18.5 175 176-353 75-275 (307)
393 PRK13616 lipoprotein LpqB; Pro 96.4 0.13 2.8E-06 53.4 16.3 166 229-408 328-524 (591)
394 PHA03098 kelch-like protein; P 96.4 0.27 5.9E-06 50.7 18.5 174 188-369 312-514 (534)
395 COG3490 Uncharacterized protei 96.3 0.85 1.9E-05 42.1 21.6 228 172-408 72-347 (366)
396 PF15390 DUF4613: Domain of un 96.3 0.34 7.4E-06 48.9 17.2 175 209-394 20-219 (671)
397 PF10168 Nup88: Nuclear pore c 96.2 0.21 4.6E-06 52.9 16.4 94 208-323 84-181 (717)
398 KOG2444 WD40 repeat protein [G 96.1 0.012 2.5E-07 52.2 5.7 140 179-322 32-178 (238)
399 PF15390 DUF4613: Domain of un 96.1 0.22 4.9E-06 50.2 15.0 144 251-407 20-184 (671)
400 PHA03098 kelch-like protein; P 96.1 0.23 4.9E-06 51.3 16.0 184 218-411 293-513 (534)
401 PF12894 Apc4_WD40: Anaphase-p 96.0 0.025 5.4E-07 37.4 5.6 37 375-414 9-45 (47)
402 PF12234 Rav1p_C: RAVE protein 96.0 0.23 5E-06 51.4 15.2 109 293-408 31-155 (631)
403 COG3204 Uncharacterized protei 95.9 1.4 3.1E-05 40.9 19.9 203 148-352 66-301 (316)
404 COG3823 Glutamine cyclotransfe 95.8 0.42 9E-06 42.1 13.5 164 186-352 67-247 (262)
405 TIGR03074 PQQ_membr_DH membran 95.8 3.5 7.7E-05 44.3 24.1 191 220-414 194-482 (764)
406 KOG4499 Ca2+-binding protein R 95.8 0.86 1.9E-05 40.9 15.6 143 209-352 109-273 (310)
407 PF05694 SBP56: 56kDa selenium 95.7 2.3 5.1E-05 41.9 21.5 210 197-411 52-344 (461)
408 PHA02790 Kelch-like protein; P 95.7 0.75 1.6E-05 46.8 17.6 171 188-369 288-473 (480)
409 COG3490 Uncharacterized protei 95.6 1.8 4E-05 40.0 19.1 215 196-414 57-315 (366)
410 PRK13684 Ycf48-like protein; P 95.5 2.5 5.5E-05 40.7 27.0 220 169-404 47-283 (334)
411 KOG1916 Nuclear protein, conta 95.4 0.017 3.6E-07 60.4 4.3 152 187-371 153-328 (1283)
412 PF14870 PSII_BNR: Photosynthe 95.4 2.6 5.5E-05 40.0 28.2 230 153-394 5-249 (302)
413 PRK13684 Ycf48-like protein; P 95.3 3 6.5E-05 40.2 26.1 229 167-407 89-329 (334)
414 COG1520 FOG: WD40-like repeat 95.1 3.6 7.7E-05 40.2 22.2 195 178-377 69-279 (370)
415 COG5167 VID27 Protein involved 95.1 0.33 7.2E-06 48.1 11.8 141 219-366 478-632 (776)
416 PRK10115 protease 2; Provision 95.0 6.2 0.00013 42.1 25.8 193 210-408 128-343 (686)
417 PF12234 Rav1p_C: RAVE protein 94.9 0.86 1.9E-05 47.3 15.0 101 261-366 42-156 (631)
418 KOG2377 Uncharacterized conser 94.7 0.75 1.6E-05 45.1 12.8 134 174-308 29-170 (657)
419 TIGR02604 Piru_Ver_Nterm putat 94.6 2 4.3E-05 42.1 16.2 142 209-352 14-201 (367)
420 KOG2280 Vacuolar assembly/sort 94.3 1.6 3.5E-05 45.4 14.9 174 229-410 63-247 (829)
421 PF10647 Gmad1: Lipoprotein Lp 94.3 4.4 9.5E-05 37.4 22.6 153 210-365 25-196 (253)
422 KOG1897 Damage-specific DNA bi 94.3 7.9 0.00017 41.8 20.1 112 293-412 776-901 (1096)
423 PF14583 Pectate_lyase22: Olig 94.3 2.7 5.8E-05 40.9 15.7 158 235-395 15-205 (386)
424 COG5276 Uncharacterized conser 94.1 5 0.00011 37.4 19.9 139 249-394 85-230 (370)
425 PF14655 RAB3GAP2_N: Rab3 GTPa 94.0 0.82 1.8E-05 45.2 12.0 86 289-376 305-408 (415)
426 KOG2280 Vacuolar assembly/sort 93.9 3.7 8E-05 42.9 16.5 214 169-394 85-312 (829)
427 PF08728 CRT10: CRT10; InterP 93.8 2.4 5.2E-05 44.6 15.5 152 168-320 39-245 (717)
428 KOG4460 Nuclear pore complex, 93.8 1.9 4.2E-05 43.1 13.8 93 209-323 104-200 (741)
429 PF14761 HPS3_N: Hermansky-Pud 93.7 4.9 0.00011 35.8 15.7 145 255-409 22-214 (215)
430 TIGR02604 Piru_Ver_Nterm putat 93.5 3.2 6.9E-05 40.6 15.4 120 271-394 48-200 (367)
431 KOG2247 WD40 repeat-containing 93.3 0.012 2.6E-07 57.6 -2.0 133 210-346 36-172 (615)
432 TIGR03547 muta_rot_YjhT mutatr 93.2 8.4 0.00018 37.1 18.3 42 188-229 86-128 (346)
433 PF14781 BBS2_N: Ciliary BBSom 93.1 4.2 9E-05 33.3 13.3 111 213-328 3-132 (136)
434 KOG2247 WD40 repeat-containing 93.1 0.074 1.6E-06 52.3 3.0 191 174-370 81-284 (615)
435 TIGR02276 beta_rpt_yvtn 40-res 93.0 0.51 1.1E-05 29.8 6.1 42 343-386 1-42 (42)
436 PF12657 TFIIIC_delta: Transcr 92.8 0.53 1.1E-05 40.7 7.7 70 169-238 6-121 (173)
437 PF07569 Hira: TUP1-like enhan 92.8 0.84 1.8E-05 41.1 9.2 71 252-323 14-97 (219)
438 PF10168 Nup88: Nuclear pore c 92.7 2.5 5.4E-05 45.0 13.9 74 291-368 84-181 (717)
439 PF08728 CRT10: CRT10; InterP 92.5 5.9 0.00013 41.8 16.0 111 252-365 102-245 (717)
440 PLN02153 epithiospecifier prot 92.2 11 0.00025 36.2 22.1 133 188-325 51-229 (341)
441 PF10214 Rrn6: RNA polymerase 92.2 20 0.00042 38.9 22.4 111 292-410 146-277 (765)
442 PF10647 Gmad1: Lipoprotein Lp 92.1 9.7 0.00021 35.1 17.8 140 252-395 25-183 (253)
443 PHA02790 Kelch-like protein; P 91.9 6 0.00013 40.2 15.3 140 178-324 319-473 (480)
444 COG5276 Uncharacterized conser 91.9 11 0.00024 35.2 22.5 146 175-324 94-244 (370)
445 KOG4460 Nuclear pore complex, 91.8 3.5 7.5E-05 41.4 12.5 75 293-370 105-202 (741)
446 TIGR03548 mutarot_permut cycli 91.8 12 0.00027 35.6 17.1 104 219-324 72-197 (323)
447 PF10313 DUF2415: Uncharacteri 91.4 1.1 2.3E-05 28.9 5.8 33 334-368 1-35 (43)
448 PF10313 DUF2415: Uncharacteri 91.4 0.96 2.1E-05 29.1 5.6 31 292-322 1-34 (43)
449 PF11715 Nup160: Nucleoporin N 91.1 4.5 9.6E-05 41.9 13.6 74 259-332 157-259 (547)
450 TIGR03118 PEPCTERM_chp_1 conse 91.1 14 0.0003 34.8 22.2 197 210-412 24-282 (336)
451 PF07995 GSDH: Glucose / Sorbo 90.9 16 0.00034 35.2 17.9 102 210-313 3-135 (331)
452 PF10395 Utp8: Utp8 family; I 90.7 24 0.00052 37.0 25.3 230 170-409 30-305 (670)
453 PF07569 Hira: TUP1-like enhan 90.5 1.5 3.3E-05 39.4 8.4 63 341-409 18-95 (219)
454 COG5167 VID27 Protein involved 90.3 4.8 0.0001 40.3 11.9 130 186-321 489-632 (776)
455 PRK14131 N-acetylneuraminic ac 90.1 20 0.00043 35.1 18.7 42 188-229 107-149 (376)
456 PLN02193 nitrile-specifier pro 89.6 26 0.00055 35.6 20.2 177 188-371 194-415 (470)
457 PLN02153 epithiospecifier prot 89.5 18 0.00039 34.8 15.6 134 188-324 102-287 (341)
458 KOG4499 Ca2+-binding protein R 89.5 16 0.00034 33.1 18.3 210 178-396 27-273 (310)
459 KOG1916 Nuclear protein, conta 89.2 0.45 9.7E-06 50.3 4.2 111 169-281 182-326 (1283)
460 PF14761 HPS3_N: Hermansky-Pud 89.1 16 0.00034 32.6 13.6 103 304-410 29-164 (215)
461 KOG3630 Nuclear pore complex, 89.0 0.99 2.1E-05 49.0 6.6 112 293-408 102-227 (1405)
462 PF12657 TFIIIC_delta: Transcr 88.9 2.6 5.7E-05 36.3 8.4 31 292-322 86-122 (173)
463 KOG1983 Tomosyn and related SN 88.8 13 0.00027 41.5 15.2 105 169-279 37-145 (993)
464 KOG1896 mRNA cleavage and poly 88.8 39 0.00084 37.7 18.1 177 185-365 1002-1212(1366)
465 TIGR03548 mutarot_permut cycli 88.5 16 0.00035 34.8 14.4 83 187-269 139-233 (323)
466 PLN00033 photosystem II stabil 88.3 28 0.00061 34.4 26.9 107 290-406 279-396 (398)
467 PF03088 Str_synth: Strictosid 87.5 7.3 0.00016 29.6 8.9 41 356-396 35-75 (89)
468 KOG2377 Uncharacterized conser 87.3 11 0.00024 37.3 12.0 137 213-352 27-172 (657)
469 COG4590 ABC-type uncharacteriz 86.9 6.1 0.00013 39.0 10.0 157 208-370 220-390 (733)
470 PF14727 PHTB1_N: PTHB1 N-term 86.0 38 0.00083 33.7 15.4 61 346-410 145-205 (418)
471 PF12768 Rax2: Cortical protei 85.8 13 0.00029 34.8 11.6 115 269-385 15-144 (281)
472 PF12768 Rax2: Cortical protei 85.8 15 0.00033 34.4 11.9 89 187-277 16-122 (281)
473 smart00036 CNH Domain found in 85.8 33 0.00071 32.5 24.2 219 179-412 14-273 (302)
474 KOG1900 Nuclear pore complex, 85.6 15 0.00033 41.0 13.2 139 183-322 95-273 (1311)
475 PF14781 BBS2_N: Ciliary BBSom 85.5 19 0.00041 29.6 12.6 86 297-386 4-101 (136)
476 PLN02193 nitrile-specifier pro 84.4 38 0.00081 34.4 15.1 133 187-324 244-413 (470)
477 TIGR02276 beta_rpt_yvtn 40-res 83.4 6 0.00013 24.6 5.9 31 301-331 1-32 (42)
478 PF07250 Glyoxal_oxid_N: Glyox 83.4 36 0.00078 31.2 12.9 140 189-331 48-207 (243)
479 TIGR03547 muta_rot_YjhT mutatr 83.1 45 0.00098 32.0 23.1 83 187-269 29-128 (346)
480 PLN00033 photosystem II stabil 83.0 52 0.0011 32.6 24.5 145 211-363 241-396 (398)
481 COG3292 Predicted periplasmic 82.9 57 0.0012 33.5 14.9 234 165-409 162-404 (671)
482 PF08801 Nucleoporin_N: Nup133 82.7 54 0.0012 32.6 15.7 32 292-323 190-221 (422)
483 PRK14131 N-acetylneuraminic ac 82.3 52 0.0011 32.2 21.5 83 187-269 50-149 (376)
484 PF11715 Nup160: Nucleoporin N 82.2 14 0.00031 38.2 11.3 38 209-246 215-256 (547)
485 PF07676 PD40: WD40-like Beta 81.6 6.7 0.00015 24.2 5.5 34 328-363 3-38 (39)
486 PF10214 Rrn6: RNA polymerase 80.9 89 0.0019 33.9 26.2 155 206-367 77-277 (765)
487 KOG1520 Predicted alkaloid syn 80.9 32 0.0007 33.3 12.1 60 347-406 188-247 (376)
488 TIGR03606 non_repeat_PQQ dehyd 80.9 65 0.0014 32.5 14.8 108 290-398 28-165 (454)
489 KOG3616 Selective LIM binding 80.6 51 0.0011 34.9 13.9 245 161-413 8-371 (1636)
490 PF10395 Utp8: Utp8 family; I 80.3 83 0.0018 33.2 22.6 161 207-375 128-314 (670)
491 KOG1900 Nuclear pore complex, 79.6 33 0.00071 38.5 12.9 149 212-367 82-273 (1311)
492 COG4880 Secreted protein conta 79.3 69 0.0015 31.7 14.3 176 187-371 406-597 (603)
493 PF13449 Phytase-like: Esteras 79.2 61 0.0013 31.0 16.8 143 251-394 20-231 (326)
494 COG3292 Predicted periplasmic 79.2 80 0.0017 32.5 14.5 226 168-403 206-441 (671)
495 COG5290 IkappaB kinase complex 79.1 95 0.002 33.3 15.3 90 296-390 251-349 (1243)
496 TIGR03606 non_repeat_PQQ dehyd 78.6 66 0.0014 32.5 14.0 104 209-312 30-166 (454)
497 PF08801 Nucleoporin_N: Nup133 77.8 40 0.00088 33.5 12.6 31 378-410 190-220 (422)
498 PF03088 Str_synth: Strictosid 77.2 23 0.0005 26.9 8.0 53 309-363 33-85 (89)
499 KOG2714 SETA binding protein S 77.0 43 0.00093 33.0 11.6 119 184-325 242-375 (465)
500 PF14727 PHTB1_N: PTHB1 N-term 76.9 84 0.0018 31.3 25.7 139 179-320 38-203 (418)
No 1
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.1e-60 Score=456.99 Aligned_cols=372 Identities=52% Similarity=0.915 Sum_probs=312.6
Q ss_pred CCCCCCCcccCCCCCC-Cccc-ccccCCCCCCCCccC--CCCCCChHHHHHHHHHHhCCCCC--CCcc-CCCCC-CCCCc
Q 014934 41 SRAIYSDRFIPSRSSS-NFDL-FNISQPSPNSPAVTD--SHKDDNSGTYTALLRAALFGPET--PEKK-DVLGP-PSGRN 112 (415)
Q Consensus 41 ~~~~~~drfip~r~~~-~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~-~~~~~ 112 (415)
....++|||||.|... ++.. |.... ....+.+.. ++..+....|..++++|+|+... ++.. ...+. +...+
T Consensus 41 ~~~~~~~rf~P~r~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 119 (484)
T KOG0305|consen 41 PSSKVGDRFIPSRLSSEEFNRNFKYIG-SFSRPNKRSALDTGRESSSLAASLLRSELFKSNKITSEQSLRALPDEPNRDR 119 (484)
T ss_pred cccccCCccCCcccchhhccccccccc-cccccccccccccccccchhhhhhhhhhhhccCccchhhhhhhccCCccccc
Confidence 4556999999999995 4433 32211 111111110 11224566777899999998651 0000 11122 22379
Q ss_pred ceeecCCCcCC-CCCCCCccc--CCCCCCCcCCCCCCCCCCCCCCCceeccCCCCCCCcceeEeecCCCcEEEEEcCCeE
Q 014934 113 IFRFKSETRRS-LHSLSPFGF--DDDVASGVSHSPVKAPRKVPRSPYKILDAPALQDDFYLNLVDWSSHNVLAVGLGNCV 189 (415)
Q Consensus 113 l~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~k~~r~i~~~p~~~ld~~~l~~~~~i~~l~ws~~~~la~~~d~~V 189 (415)
+|.|+..++.+ .....|... ..+........|++..|+++..|+++||+|.+.+|||+|.++|+..++||+|++..|
T Consensus 120 i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~r~~~r~~~~~p~rvLDaP~l~dDfY~nlldWss~n~laValg~~v 199 (484)
T KOG0305|consen 120 ILTYKSKAPRPRSRTQEPDSVYPSAESSIRLLSSPRKLKRKIPQTPYRVLDAPGLQDDFYLNLLDWSSANVLAVALGQSV 199 (484)
T ss_pred eeEecccCCCCccccccccccccccccccccccccccccCcccCChhhhccCCcccccHhhhHhhcccCCeEEEEecceE
Confidence 99999987663 222223211 011111233457899999999999999999999999999999999999999999999
Q ss_pred EEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEecC-CCccEEEEEeeCCEEEEEeC
Q 014934 190 YLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEG-HRLRVGALAWSSSLLSSGSR 268 (415)
Q Consensus 190 ~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~-h~~~V~~l~~~~~~l~sgs~ 268 (415)
|+|+..++++..++.++ .+.|++|.|+++|.+||+|..+|.|.|||..+.+.++.+.+ |..+|.+++|+...+.+|+.
T Consensus 200 ylW~~~s~~v~~l~~~~-~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~~~lssGsr 278 (484)
T KOG0305|consen 200 YLWSASSGSVTELCSFG-EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNSSVLSSGSR 278 (484)
T ss_pred EEEecCCCceEEeEecC-CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEeccCceEEEecC
Confidence 99999999999999876 78999999999999999999999999999999999999998 99999999999999999999
Q ss_pred CCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcE
Q 014934 269 DKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGL 348 (415)
Q Consensus 269 dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~l 348 (415)
|+.|.++|++..+.....+.+|.++||+++|++|+++||+|++|+.+.|||.....+.+++..|.++|++++|||....|
T Consensus 279 ~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~l 358 (484)
T KOG0305|consen 279 DGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGL 358 (484)
T ss_pred CCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCc
Confidence 99999999999887666688999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCCeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCCccc
Q 014934 349 LASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKV 414 (415)
Q Consensus 349 lasggg~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~~l 414 (415)
||+|||+.|++|+|||+.+|+.+..++++++||+|.|++..++|+++||+.++.|.||+|++++++
T Consensus 359 LAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~ 424 (484)
T KOG0305|consen 359 LATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLV 424 (484)
T ss_pred eEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEecccccee
Confidence 999999999999999999999999999999999999999999999999999999999999998765
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.2e-37 Score=283.83 Aligned_cols=238 Identities=27% Similarity=0.519 Sum_probs=210.6
Q ss_pred CcceeEeecCC-CcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeee-
Q 014934 167 DFYLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRV- 243 (415)
Q Consensus 167 ~~~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~- 243 (415)
+..|-|+.|+| +..|++| .|.++++||+.+......+. +|...|.||+|+|||+.||+|+.||+|++||.++++++
T Consensus 115 ~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~K-gH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g 193 (480)
T KOG0271|consen 115 GEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCK-GHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIG 193 (480)
T ss_pred CCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeec-CCccEEEEEEECCCcchhhccccCCeEEEecCCCCCccc
Confidence 44688999999 7788888 46899999999999888887 99999999999999999999999999999999988755
Q ss_pred EEecCCCccEEEEEeeC-------CEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEE
Q 014934 244 RTMEGHRLRVGALAWSS-------SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLF 316 (415)
Q Consensus 244 ~~l~~h~~~V~~l~~~~-------~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~ 316 (415)
+.+.+|...|++++|.| ++|++++.||.|+|||+..+. ++..+.+|...|+|++|--+| +|++|+.|++|+
T Consensus 194 ~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~-~~~~lsgHT~~VTCvrwGG~g-liySgS~DrtIk 271 (480)
T KOG0271|consen 194 RALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGT-CVRTLSGHTASVTCVRWGGEG-LIYSGSQDRTIK 271 (480)
T ss_pred ccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCce-EEEEeccCccceEEEEEcCCc-eEEecCCCceEE
Confidence 67899999999999973 689999999999999998876 688899999999999997544 888999999999
Q ss_pred EEECCCC-------------------------------------------------------------------------
Q 014934 317 VWNQHST------------------------------------------------------------------------- 323 (415)
Q Consensus 317 iwd~~~~------------------------------------------------------------------------- 323 (415)
+|+...|
T Consensus 272 vw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW 351 (480)
T KOG0271|consen 272 VWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLW 351 (480)
T ss_pred EEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEe
Confidence 9986431
Q ss_pred ------ceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee-CCCCEEEEEECCCCCeEEEEE
Q 014934 324 ------QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKNVNELVSTH 396 (415)
Q Consensus 324 ------~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~-~~~~V~~l~~s~~~~~l~s~~ 396 (415)
+++.++.+|+.-|+.+.|+|+++ ++|+++ .|+.|++||.++|+.+..+. |-..|+.++|+.|.+.|++
T Consensus 352 ~p~~~kkpi~rmtgHq~lVn~V~fSPd~r-~IASaS--FDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS-- 426 (480)
T KOG0271|consen 352 NPFKSKKPITRMTGHQALVNHVSFSPDGR-YIASAS--FDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVS-- 426 (480)
T ss_pred cccccccchhhhhchhhheeeEEECCCcc-EEEEee--cccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEE--
Confidence 23334567899999999999997 888887 99999999999999999997 7789999999999999999
Q ss_pred ecCCCcEEEEECCCCc
Q 014934 397 GYSQNQIIVWRYPTMS 412 (415)
Q Consensus 397 g~~dg~I~vw~~~s~~ 412 (415)
|+.|.+|+||++.+.+
T Consensus 427 ~SkDsTLKvw~V~tkK 442 (480)
T KOG0271|consen 427 GSKDSTLKVWDVRTKK 442 (480)
T ss_pred cCCCceEEEEEeeeee
Confidence 8899999999998743
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.6e-37 Score=282.90 Aligned_cols=236 Identities=25% Similarity=0.482 Sum_probs=212.9
Q ss_pred CcceeEeecCC-CcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcC-----CCCeEEEEECCCcEEEEECCC
Q 014934 167 DFYLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWAN-----RNTHLAVGTSHGKVQIWDASR 239 (415)
Q Consensus 167 ~~~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp-----~g~~la~g~~dg~V~iwd~~~ 239 (415)
.-+|-|++|+| +..||.| .+|+|.+||..+|+..-...-+|...|++++|.| ..++||+++.||.|+|||+..
T Consensus 157 ~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~ 236 (480)
T KOG0271|consen 157 KNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKL 236 (480)
T ss_pred ccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccC
Confidence 45799999999 8888888 5899999999999876555449999999999976 567999999999999999999
Q ss_pred CeeeEEecCCCccEEEEEee-CCEEEEEeCCCcEEEEECCCCC-------------------------------------
Q 014934 240 CKRVRTMEGHRLRVGALAWS-SSLLSSGSRDKSILQRDIRAQE------------------------------------- 281 (415)
Q Consensus 240 ~~~~~~l~~h~~~V~~l~~~-~~~l~sgs~dg~I~iwd~~~~~------------------------------------- 281 (415)
+.++..+.+|..+|+|+.|- ..++++|+.|++|++|+...+.
T Consensus 237 ~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~ 316 (480)
T KOG0271|consen 237 GTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKS 316 (480)
T ss_pred ceEEEEeccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCC
Confidence 99999999999999999999 4799999999999999865321
Q ss_pred -----------------------------------------ccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEEC
Q 014934 282 -----------------------------------------DFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQ 320 (415)
Q Consensus 282 -----------------------------------------~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~ 320 (415)
+++..+.+|...|..+.||||++++|+++-|+.|++||.
T Consensus 317 ~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g 396 (480)
T KOG0271|consen 317 FSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDG 396 (480)
T ss_pred hHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeC
Confidence 112235689999999999999999999999999999999
Q ss_pred CCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee-CCCCEEEEEECCCCCeEEEEEecC
Q 014934 321 HSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKNVNELVSTHGYS 399 (415)
Q Consensus 321 ~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~-~~~~V~~l~~s~~~~~l~s~~g~~ 399 (415)
++|+.+..|.+|-++|..++|+.|.+ ||++|+ .|.++++|++++.+....+. |..+|.++.|+|||..+++ |+.
T Consensus 397 ~tGk~lasfRGHv~~VYqvawsaDsR-LlVS~S--kDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~s--ggk 471 (480)
T KOG0271|consen 397 RTGKFLASFRGHVAAVYQVAWSADSR-LLVSGS--KDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVAS--GGK 471 (480)
T ss_pred CCcchhhhhhhccceeEEEEeccCcc-EEEEcC--CCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeec--CCC
Confidence 99999999999999999999999986 999988 99999999999999988887 8899999999999999998 889
Q ss_pred CCcEEEEE
Q 014934 400 QNQIIVWR 407 (415)
Q Consensus 400 dg~I~vw~ 407 (415)
|..+++|.
T Consensus 472 dkv~~lw~ 479 (480)
T KOG0271|consen 472 DKVLRLWR 479 (480)
T ss_pred ceEEEeec
Confidence 99999996
No 4
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.9e-37 Score=284.54 Aligned_cols=235 Identities=21% Similarity=0.330 Sum_probs=217.6
Q ss_pred CcceeEeecCCC----cEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCee
Q 014934 167 DFYLNLVDWSSH----NVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKR 242 (415)
Q Consensus 167 ~~~i~~l~ws~~----~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~ 242 (415)
.-.+.++.|+|. ++..++.||+|++|+..+...+..++ +|...|..|+|+|+|++|++++.|.+-++||+.++..
T Consensus 217 ~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~-gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~E 295 (459)
T KOG0272|consen 217 TSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLE-GHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSE 295 (459)
T ss_pred ccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhh-cchhhheeeeecCCCceeeecccccchhhcccccchh
Confidence 346889999994 34444579999999999887776665 8999999999999999999999999999999999999
Q ss_pred eEEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEEC
Q 014934 243 VRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQ 320 (415)
Q Consensus 243 ~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~ 320 (415)
+...+||...|.+++|+ |.++++|+.|..-+|||+|++. ++..+.+|..+|.++.|+|+|.+||||+.|++++|||+
T Consensus 296 lL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr-~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDL 374 (459)
T KOG0272|consen 296 LLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGR-CIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDL 374 (459)
T ss_pred hHhhcccccccceeEecCCCceeeccCccchhheeecccCc-EEEEecccccceeeEeECCCceEEeecCCCCcEEEeee
Confidence 98899999999999998 6899999999999999999998 68899999999999999999999999999999999999
Q ss_pred CCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee-CCCCEEEEEECCCCCeEEEEEecC
Q 014934 321 HSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKNVNELVSTHGYS 399 (415)
Q Consensus 321 ~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~-~~~~V~~l~~s~~~~~l~s~~g~~ 399 (415)
+..+.+..+.+|..-|+.|.|+|...++|++++ .|+++++|...+..+++.+. |.+.|.++.+++++..+++ ++.
T Consensus 375 R~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~Tas--yD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t--~s~ 450 (459)
T KOG0272|consen 375 RMRSELYTIPAHSNLVSQVKYSPQEGYFLVTAS--YDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIAT--SSF 450 (459)
T ss_pred cccccceecccccchhhheEecccCCeEEEEcc--cCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEE--ecc
Confidence 999999999999999999999997777999998 99999999999999999886 7889999999999999999 678
Q ss_pred CCcEEEEE
Q 014934 400 QNQIIVWR 407 (415)
Q Consensus 400 dg~I~vw~ 407 (415)
|++|++|.
T Consensus 451 DRT~KLW~ 458 (459)
T KOG0272|consen 451 DRTIKLWR 458 (459)
T ss_pred Cceeeecc
Confidence 99999995
No 5
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.8e-36 Score=279.39 Aligned_cols=250 Identities=22% Similarity=0.352 Sum_probs=226.2
Q ss_pred eccCCCCCCCcceeEeecCC-CcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCC--CCeEEEEECCCcEE
Q 014934 158 ILDAPALQDDFYLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANR--NTHLAVGTSHGKVQ 233 (415)
Q Consensus 158 ~ld~~~l~~~~~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~--g~~la~g~~dg~V~ 233 (415)
.|....+.++-.+..+.|+. +..|++| .+|.+++|+..+......+. +|.+.|.++.|+|. +..||+|+.||+|+
T Consensus 166 ~l~~SQ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~-gH~~~v~~~~fhP~~~~~~lat~s~Dgtvk 244 (459)
T KOG0272|consen 166 ELVCSQVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLR-GHTSRVGAAVFHPVDSDLNLATASADGTVK 244 (459)
T ss_pred hhhhhhccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEe-ccccceeeEEEccCCCccceeeeccCCcee
Confidence 34556677788899999998 7777777 59999999999998777776 99999999999996 66899999999999
Q ss_pred EEECCCCeeeEEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeC
Q 014934 234 IWDASRCKRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGN 311 (415)
Q Consensus 234 iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~ 311 (415)
+|++.+...+..+.+|..+|..++|+ |++|.+++.|.+-++||++++.. +....||..+|.+++|+|||.++++||.
T Consensus 245 lw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~E-lL~QEGHs~~v~~iaf~~DGSL~~tGGl 323 (459)
T KOG0272|consen 245 LWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSE-LLLQEGHSKGVFSIAFQPDGSLAATGGL 323 (459)
T ss_pred eeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchh-hHhhcccccccceeEecCCCceeeccCc
Confidence 99999999999999999999999999 68999999999999999999884 5667899999999999999999999999
Q ss_pred CCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee-CCCCEEEEEECC-CC
Q 014934 312 DNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSK-NV 389 (415)
Q Consensus 312 dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~-~~~~V~~l~~s~-~~ 389 (415)
|..-+|||+++++++..+.+|...|.+++|+|+| +.+|+|+ .|++++|||++....+..+. |.+-|+.+.|+| .|
T Consensus 324 D~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNG-y~lATgs--~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g 400 (459)
T KOG0272|consen 324 DSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNG-YHLATGS--SDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEG 400 (459)
T ss_pred cchhheeecccCcEEEEecccccceeeEeECCCc-eEEeecC--CCCcEEEeeecccccceecccccchhhheEecccCC
Confidence 9999999999999999999999999999999998 4899988 89999999999999988886 677899999999 66
Q ss_pred CeEEEEEecCCCcEEEEECCCCccc
Q 014934 390 NELVSTHGYSQNQIIVWRYPTMSKV 414 (415)
Q Consensus 390 ~~l~s~~g~~dg~I~vw~~~s~~~l 414 (415)
.+|++ ++-|++++||.-++...+
T Consensus 401 ~fL~T--asyD~t~kiWs~~~~~~~ 423 (459)
T KOG0272|consen 401 YFLVT--ASYDNTVKIWSTRTWSPL 423 (459)
T ss_pred eEEEE--cccCcceeeecCCCcccc
Confidence 77777 567999999999887654
No 6
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.9e-34 Score=284.37 Aligned_cols=236 Identities=20% Similarity=0.384 Sum_probs=213.7
Q ss_pred ceeEeecCC-CcEEEEE-cCCeEEEEECCCCC-------------------------------eEEeEecCCCCCeEEEE
Q 014934 169 YLNLVDWSS-HNVLAVG-LGNCVYLWNACSSK-------------------------------VTKLCDLGIDDSVCSVG 215 (415)
Q Consensus 169 ~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~-------------------------------~~~~~~~~~~~~V~~v~ 215 (415)
.++|.++++ ..+||.| .|..|++|.+...+ ..+. ..+|.++|.++.
T Consensus 380 ~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~-L~GH~GPVyg~s 458 (707)
T KOG0263|consen 380 GVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRT-LYGHSGPVYGCS 458 (707)
T ss_pred cceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEE-eecCCCceeeee
Confidence 388999999 6788888 47899999986311 1111 238999999999
Q ss_pred EcCCCCeEEEEECCCcEEEEECCCCeeeEEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCC
Q 014934 216 WANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSE 293 (415)
Q Consensus 216 ~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~ 293 (415)
|+|+.++|++++.|++|++|.+.+..++..+++|..+|+++.|+ |.+|++++.|++.++|...... +.+.+.+|-..
T Consensus 459 FsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~-PlRifaghlsD 537 (707)
T KOG0263|consen 459 FSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNK-PLRIFAGHLSD 537 (707)
T ss_pred ecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCC-chhhhcccccc
Confidence 99999999999999999999999999999999999999999999 5799999999999999998865 78899999999
Q ss_pred eEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEE
Q 014934 294 VCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSC 373 (415)
Q Consensus 294 V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~ 373 (415)
|.|++|+|+..++|+|+.|.+|++||+.+|..+..|.+|.++|.+++|||+|+ .|++|+ .|+.|++||+.+|..+..
T Consensus 538 V~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr-~LaSg~--ed~~I~iWDl~~~~~v~~ 614 (707)
T KOG0263|consen 538 VDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGR-YLASGD--EDGLIKIWDLANGSLVKQ 614 (707)
T ss_pred cceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCc-eEeecc--cCCcEEEEEcCCCcchhh
Confidence 99999999999999999999999999999999999999999999999999998 788887 999999999999988776
Q ss_pred ee-CCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCC
Q 014934 374 MD-TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTM 411 (415)
Q Consensus 374 ~~-~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~ 411 (415)
+. |.+.|+++.|+.+|..||+ |+.|++|++||+..-
T Consensus 615 l~~Ht~ti~SlsFS~dg~vLas--gg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 615 LKGHTGTIYSLSFSRDGNVLAS--GGADNSVRLWDLTKV 651 (707)
T ss_pred hhcccCceeEEEEecCCCEEEe--cCCCCeEEEEEchhh
Confidence 64 7788999999999999999 788999999998653
No 7
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1e-32 Score=244.06 Aligned_cols=246 Identities=20% Similarity=0.349 Sum_probs=217.9
Q ss_pred eeccCCCCCCCcceeEeecCC-C-cEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEE
Q 014934 157 KILDAPALQDDFYLNLVDWSS-H-NVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQI 234 (415)
Q Consensus 157 ~~ld~~~l~~~~~i~~l~ws~-~-~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~i 234 (415)
++|.-+.- .|.+++|++ . .++.++.||.+.|||..+......+.+ ....|..++|+|.|+++|+|+-|+...|
T Consensus 49 r~LkGH~~----Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl-~s~WVMtCA~sPSg~~VAcGGLdN~Csi 123 (343)
T KOG0286|consen 49 RTLKGHLN----KIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPL-PSSWVMTCAYSPSGNFVACGGLDNKCSI 123 (343)
T ss_pred EEeccccc----ceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEec-CceeEEEEEECCCCCeEEecCcCceeEE
Confidence 55554332 478999999 4 455555799999999999887777764 3678999999999999999999999999
Q ss_pred EECCCC------eeeEEecCCCccEEEEEee-CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeC-CCCEE
Q 014934 235 WDASRC------KRVRTMEGHRLRVGALAWS-SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSY-DNREL 306 (415)
Q Consensus 235 wd~~~~------~~~~~l~~h~~~V~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~l 306 (415)
|++.+. +..+.+.+|.+.+.|+.|- ...|++++.|.++.+||++++. ....+.+|.+.|.+|.++| +++.|
T Consensus 124 y~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~-~~~~f~GH~gDV~slsl~p~~~ntF 202 (343)
T KOG0286|consen 124 YPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQ-QTQVFHGHTGDVMSLSLSPSDGNTF 202 (343)
T ss_pred EecccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccce-EEEEecCCcccEEEEecCCCCCCeE
Confidence 999754 4567789999999999997 6899999999999999999998 5888999999999999999 99999
Q ss_pred EEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCC---CCEEEE
Q 014934 307 ASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTG---SQVCNL 383 (415)
Q Consensus 307 asg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~---~~V~~l 383 (415)
++|+-|+..+|||++.+..++.|.+|...|++++|.|+|. -+++|+ .|++.++||++..+.+..+.+. ..|+++
T Consensus 203 vSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~-afatGS--DD~tcRlyDlRaD~~~a~ys~~~~~~gitSv 279 (343)
T KOG0286|consen 203 VSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGD-AFATGS--DDATCRLYDLRADQELAVYSHDSIICGITSV 279 (343)
T ss_pred EecccccceeeeeccCcceeEeecccccccceEEEccCCC-eeeecC--CCceeEEEeecCCcEEeeeccCcccCCceeE
Confidence 9999999999999999999999999999999999999996 778877 9999999999999998888754 568999
Q ss_pred EECCCCCeEEEEEecCCCcEEEEECCCCcc
Q 014934 384 VWSKNVNELVSTHGYSQNQIIVWRYPTMSK 413 (415)
Q Consensus 384 ~~s~~~~~l~s~~g~~dg~I~vw~~~s~~~ 413 (415)
+||..|++|++ |+.|..+.|||.=..+.
T Consensus 280 ~FS~SGRlLfa--gy~d~~c~vWDtlk~e~ 307 (343)
T KOG0286|consen 280 AFSKSGRLLFA--GYDDFTCNVWDTLKGER 307 (343)
T ss_pred EEcccccEEEe--eecCCceeEeeccccce
Confidence 99999999999 89999999999765543
No 8
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=3.1e-33 Score=261.01 Aligned_cols=242 Identities=22% Similarity=0.393 Sum_probs=219.0
Q ss_pred CCCcceeEeecCC-CcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCee
Q 014934 165 QDDFYLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKR 242 (415)
Q Consensus 165 ~~~~~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~ 242 (415)
.+.-.|++++|+. +.+||+| .+|.++||+...+. ...+. .|.++|.++.|+.+|.+|++++.||++.+||..++..
T Consensus 233 ~~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l-~~tl~-~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~ 310 (524)
T KOG0273|consen 233 PSNKDVTSLDWNNDGTLLATGSEDGEARIWNKDGNL-ISTLG-QHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTV 310 (524)
T ss_pred CccCCcceEEecCCCCeEEEeecCcEEEEEecCchh-hhhhh-ccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceE
Confidence 3345699999998 8999999 58999999975544 44443 7899999999999999999999999999999999999
Q ss_pred eEEecCCCccEEEEEee-CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECC
Q 014934 243 VRTMEGHRLRVGALAWS-SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQH 321 (415)
Q Consensus 243 ~~~l~~h~~~V~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~ 321 (415)
...+..|..+-..+.|- ...|++++.|+.|+++-+.... ++.++.+|.++|.+|.|+|.|.+|++++.|++++||+..
T Consensus 311 ~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~-P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~ 389 (524)
T KOG0273|consen 311 KQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDR-PVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMG 389 (524)
T ss_pred EEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCC-cceeeecccCceEEEEECCCCceEEEecCCCeeEeeecC
Confidence 99999999988889997 6899999999999999998876 688899999999999999999999999999999999999
Q ss_pred CCceeEEeccCCCcEEEEEEcCCCC--------cEEEEEcCCCCCeEEEEECCCCcEEEEe-eCCCCEEEEEECCCCCeE
Q 014934 322 STQPVLKYCEHTAAVKAIAWSPHLH--------GLLASGGGTADRCIRFWNTTTNTHLSCM-DTGSQVCNLVWSKNVNEL 392 (415)
Q Consensus 322 ~~~~~~~~~~h~~~V~~l~~sp~~~--------~llasggg~~d~~I~iwd~~t~~~~~~~-~~~~~V~~l~~s~~~~~l 392 (415)
.......+..|...|..+.|+|.|. ..+++++ .|++|++||+..|.++..+ +|..+|.+++|+|+|+++
T Consensus 390 ~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas--~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~yl 467 (524)
T KOG0273|consen 390 QSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASAS--FDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYL 467 (524)
T ss_pred CCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEee--cCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEE
Confidence 9999999999999999999999874 3566666 8999999999999999998 689999999999999999
Q ss_pred EEEEecCCCcEEEEECCCCcc
Q 014934 393 VSTHGYSQNQIIVWRYPTMSK 413 (415)
Q Consensus 393 ~s~~g~~dg~I~vw~~~s~~~ 413 (415)
++ |+.||.|++|+.++.+-
T Consensus 468 As--Gs~dg~V~iws~~~~~l 486 (524)
T KOG0273|consen 468 AS--GSLDGCVHIWSTKTGKL 486 (524)
T ss_pred Ee--cCCCCeeEeccccchhe
Confidence 99 99999999999998653
No 9
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=4.7e-33 Score=244.77 Aligned_cols=238 Identities=21% Similarity=0.326 Sum_probs=206.2
Q ss_pred eeEeecCC---CcEEEEEcCCeEEEEECCC-----CCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCe
Q 014934 170 LNLVDWSS---HNVLAVGLGNCVYLWNACS-----SKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCK 241 (415)
Q Consensus 170 i~~l~ws~---~~~la~~~d~~V~iwd~~~-----~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~ 241 (415)
|..++..+ +.++.++.|..+.+|++.. |...+.+. +|.-.|..+..++||++.++++.||++++||+.+++
T Consensus 18 Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~-GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~ 96 (315)
T KOG0279|consen 18 VTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLT-GHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGE 96 (315)
T ss_pred EEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeee-ccceEecceEEccCCceEEeccccceEEEEEecCCc
Confidence 44555444 3445555789999998754 55667776 899999999999999999999999999999999999
Q ss_pred eeEEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCC--CCEEEEEeCCCcEEE
Q 014934 242 RVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYD--NRELASGGNDNRLFV 317 (415)
Q Consensus 242 ~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd--g~~lasg~~dg~I~i 317 (415)
..+.|.+|...|.+++++ ...+++|++|++|++|++-........-..+..-|.|+.|+|+ ..+|++++.|++|++
T Consensus 97 ~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKv 176 (315)
T KOG0279|consen 97 STRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKV 176 (315)
T ss_pred EEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEE
Confidence 999999999999999999 4799999999999999998765322222233788999999997 789999999999999
Q ss_pred EECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEEEEe
Q 014934 318 WNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHG 397 (415)
Q Consensus 318 wd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g 397 (415)
||+++.+....+.+|++.++.++++|||. +.++|| .||.+.+||+..++.++.+++...|.+++|+|+...|+.+.
T Consensus 177 Wnl~~~~l~~~~~gh~~~v~t~~vSpDGs-lcasGg--kdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnrywL~~at- 252 (315)
T KOG0279|consen 177 WNLRNCQLRTTFIGHSGYVNTVTVSPDGS-LCASGG--KDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNRYWLCAAT- 252 (315)
T ss_pred EccCCcchhhccccccccEEEEEECCCCC-EEecCC--CCceEEEEEccCCceeEeccCCCeEeeEEecCCceeEeecc-
Confidence 99999999999999999999999999998 899987 99999999999999999999999999999999999888843
Q ss_pred cCCCcEEEEECCCCccc
Q 014934 398 YSQNQIIVWRYPTMSKV 414 (415)
Q Consensus 398 ~~dg~I~vw~~~s~~~l 414 (415)
+..|+|||..+...+
T Consensus 253 --~~sIkIwdl~~~~~v 267 (315)
T KOG0279|consen 253 --ATSIKIWDLESKAVV 267 (315)
T ss_pred --CCceEEEeccchhhh
Confidence 446999999886543
No 10
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1e-32 Score=242.60 Aligned_cols=232 Identities=23% Similarity=0.431 Sum_probs=198.1
Q ss_pred ceeEeecCC-Cc-EEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEe
Q 014934 169 YLNLVDWSS-HN-VLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTM 246 (415)
Q Consensus 169 ~i~~l~ws~-~~-~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l 246 (415)
.|+-++.++ ++ .|.++.|+.+++||+.+++..+.+. +|...|.+++|++|.+.+++|+.|.+|.+|++.........
T Consensus 65 ~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~-GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~ 143 (315)
T KOG0279|consen 65 FVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFV-GHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIH 143 (315)
T ss_pred EecceEEccCCceEEeccccceEEEEEecCCcEEEEEE-ecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEe
Confidence 466667777 44 5555579999999999998888876 99999999999999999999999999999998755443333
Q ss_pred cC-CCccEEEEEeeCC----EEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECC
Q 014934 247 EG-HRLRVGALAWSSS----LLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQH 321 (415)
Q Consensus 247 ~~-h~~~V~~l~~~~~----~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~ 321 (415)
.. +..-|.|+.|+|+ +|++++.|+++++||+++.+ ....+.+|.+.++.+++||||.++++|+.||.+.+||++
T Consensus 144 ~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~-l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~ 222 (315)
T KOG0279|consen 144 EDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQ-LRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLN 222 (315)
T ss_pred cCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcc-hhhccccccccEEEEEECCCCCEEecCCCCceEEEEEcc
Confidence 32 3789999999964 89999999999999999887 678888999999999999999999999999999999999
Q ss_pred CCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeC----------CCCEEEEEECCCCCe
Q 014934 322 STQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDT----------GSQVCNLVWSKNVNE 391 (415)
Q Consensus 322 ~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~----------~~~V~~l~~s~~~~~ 391 (415)
.++.+..+ +|...|.+++|+|+.- .|+.+ .+..|+|||+.++.++..+.. .-.-.+++|+++|..
T Consensus 223 ~~k~lysl-~a~~~v~sl~fspnry-wL~~a---t~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~t 297 (315)
T KOG0279|consen 223 EGKNLYSL-EAFDIVNSLCFSPNRY-WLCAA---TATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQT 297 (315)
T ss_pred CCceeEec-cCCCeEeeEEecCCce-eEeec---cCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcE
Confidence 99998887 7899999999999864 44444 467799999999988776641 122457999999999
Q ss_pred EEEEEecCCCcEEEEECC
Q 014934 392 LVSTHGYSQNQIIVWRYP 409 (415)
Q Consensus 392 l~s~~g~~dg~I~vw~~~ 409 (415)
|++ |+.||.|++|.+.
T Consensus 298 Lf~--g~td~~irv~qv~ 313 (315)
T KOG0279|consen 298 LFA--GYTDNVIRVWQVA 313 (315)
T ss_pred EEe--eecCCcEEEEEee
Confidence 999 9999999999874
No 11
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=2.2e-32 Score=236.94 Aligned_cols=242 Identities=21% Similarity=0.332 Sum_probs=206.5
Q ss_pred CcceeEeecCC-CcEEEEEcCCeEEEEECCCCCeEEeEec-CCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeE
Q 014934 167 DFYLNLVDWSS-HNVLAVGLGNCVYLWNACSSKVTKLCDL-GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVR 244 (415)
Q Consensus 167 ~~~i~~l~ws~-~~~la~~~d~~V~iwd~~~~~~~~~~~~-~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~ 244 (415)
|.-||.+...| +..||++....|++||+.+++...+..+ +|+..|++|.|..+|+.+++|+.||+++|||++...+.+
T Consensus 40 dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR 119 (311)
T KOG0315|consen 40 DSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQR 119 (311)
T ss_pred ccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccch
Confidence 34589999999 8899999999999999999876444333 888999999999999999999999999999999977777
Q ss_pred EecCCCccEEEEEeeC--CEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCC
Q 014934 245 TMEGHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHS 322 (415)
Q Consensus 245 ~l~~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~ 322 (415)
.++ |..+|+++..++ ..|++|..+|.|++||++........+......|.++...|||.+|+.+.+-|.+++|++.+
T Consensus 120 ~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~ 198 (311)
T KOG0315|consen 120 NYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLN 198 (311)
T ss_pred hcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccC
Confidence 676 779999999996 58999999999999999987533333344557899999999999999999999999999865
Q ss_pred C------ceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCC-cEEEEee-CCCCEEEEEECCCCCeEEE
Q 014934 323 T------QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTN-THLSCMD-TGSQVCNLVWSKNVNELVS 394 (415)
Q Consensus 323 ~------~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~-~~~~~~~-~~~~V~~l~~s~~~~~l~s 394 (415)
. +++.+++.|++.+..+.+||+++ +||+++ .|.+++||++.+. +....++ +...+..++||.+|++|++
T Consensus 199 ~~~~s~l~P~~k~~ah~~~il~C~lSPd~k-~lat~s--sdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvT 275 (311)
T KOG0315|consen 199 HQTASELEPVHKFQAHNGHILRCLLSPDVK-YLATCS--SDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVT 275 (311)
T ss_pred CCccccceEhhheecccceEEEEEECCCCc-EEEeec--CCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEe
Confidence 4 56788899999999999999998 666665 7999999999987 3323333 4457999999999999999
Q ss_pred EEecCCCcEEEEECCCCccc
Q 014934 395 THGYSQNQIIVWRYPTMSKV 414 (415)
Q Consensus 395 ~~g~~dg~I~vw~~~s~~~l 414 (415)
|++|+..++|+++..+++
T Consensus 276 --assd~~~rlW~~~~~k~v 293 (311)
T KOG0315|consen 276 --ASSDHTARLWDLSAGKEV 293 (311)
T ss_pred --cCCCCceeecccccCcee
Confidence 889999999999998864
No 12
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.6e-33 Score=258.80 Aligned_cols=238 Identities=21% Similarity=0.445 Sum_probs=215.3
Q ss_pred CCcceeEeecCC-CcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeee
Q 014934 166 DDFYLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRV 243 (415)
Q Consensus 166 ~~~~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~ 243 (415)
.|..|.++.|++ +.++++| .+|.|++|+..-..+. .+.-.|...|++++|+|+...+++++.||+|+|||....+..
T Consensus 137 HDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk-~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee 215 (464)
T KOG0284|consen 137 HDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVK-IIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEE 215 (464)
T ss_pred hcccceeEEEccCCCEEEEcCCCceEEecccchhhhH-HhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchh
Confidence 466799999999 7777777 4689999998665543 333355689999999999999999999999999999998888
Q ss_pred EEecCCCccEEEEEeeC--CEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECC
Q 014934 244 RTMEGHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQH 321 (415)
Q Consensus 244 ~~l~~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~ 321 (415)
+.+.+|.-.|.+++|+| .++++|+.|..|++||.+++. ++..+.+|+..|.++.|+|++++|++++.|..++++|++
T Consensus 216 ~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~-cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR 294 (464)
T KOG0284|consen 216 RVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGS-CLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIR 294 (464)
T ss_pred heeccCCCCcceeccCCccceeEEccCCceeEeecCCCcc-hhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehh
Confidence 89999999999999996 699999999999999999998 688999999999999999999999999999999999999
Q ss_pred CCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee--CCCCEEEEEECCCCCeEEEEEecC
Q 014934 322 STQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD--TGSQVCNLVWSKNVNELVSTHGYS 399 (415)
Q Consensus 322 ~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~--~~~~V~~l~~s~~~~~l~s~~g~~ 399 (415)
+.+.++.+++|+..|++++|+|-.+.||++|| .||.|.+|.+...+++..+. |...|++++|+|-|..|++ |+.
T Consensus 295 ~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg--~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~t--gsn 370 (464)
T KOG0284|consen 295 TMKELFTYRGHKKDVTSLTWHPLNESLFTSGG--SDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILAT--GSN 370 (464)
T ss_pred HhHHHHHhhcchhhheeeccccccccceeecc--CCCceEEEeccccccccCCCcccccceeeeeccccceeEee--cCC
Confidence 99999999999999999999999999999998 89999999998777777665 6788999999999999988 899
Q ss_pred CCcEEEEECC
Q 014934 400 QNQIIVWRYP 409 (415)
Q Consensus 400 dg~I~vw~~~ 409 (415)
|.++++|.-.
T Consensus 371 d~t~rfw~r~ 380 (464)
T KOG0284|consen 371 DRTVRFWTRN 380 (464)
T ss_pred CcceeeeccC
Confidence 9999999743
No 13
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.5e-32 Score=246.89 Aligned_cols=242 Identities=22% Similarity=0.344 Sum_probs=218.5
Q ss_pred CcceeEeecCCCcEEEEE--cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCC-Ceee
Q 014934 167 DFYLNLVDWSSHNVLAVG--LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASR-CKRV 243 (415)
Q Consensus 167 ~~~i~~l~ws~~~~la~~--~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~-~~~~ 243 (415)
...|..+-++|...+.+. .|.+|++||..++++.+.+. +|.+.|.+|+|+..|++||+++.|-.+++||..+ .+++
T Consensus 108 r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~Lr-GHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ 186 (406)
T KOG0295|consen 108 RSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLR-GHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCI 186 (406)
T ss_pred ccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhh-ccccceeEEEEecCccEEEecCCccchhheeHHHHHHHH
Confidence 456788888995544444 48999999999999977776 9999999999999999999999998899999987 5788
Q ss_pred EEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECC
Q 014934 244 RTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQH 321 (415)
Q Consensus 244 ~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~ 321 (415)
+.+.+|...|.+++|- +++++++++|.+|+.|++.++. ++.++.+|..-|..++.+.||.++|++++|.+|++|-+.
T Consensus 187 ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~-cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~ 265 (406)
T KOG0295|consen 187 KSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGY-CVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVA 265 (406)
T ss_pred HHhcCcccceeeEEEEecCCeeeecccccceeEEecccce-eEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEec
Confidence 8899999999999997 6999999999999999999998 789999999999999999999999999999999999999
Q ss_pred CCceeEEeccCCCcEEEEEEcCCC--------------CcEEEEEcCCCCCeEEEEECCCCcEEEEee-CCCCEEEEEEC
Q 014934 322 STQPVLKYCEHTAAVKAIAWSPHL--------------HGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWS 386 (415)
Q Consensus 322 ~~~~~~~~~~h~~~V~~l~~sp~~--------------~~llasggg~~d~~I~iwd~~t~~~~~~~~-~~~~V~~l~~s 386 (415)
++++...+.+|+.+|.+++|.|.. ..++++++ .|++|++||+.+|.++.++. |.+.|+.++|+
T Consensus 266 t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~S--rDktIk~wdv~tg~cL~tL~ghdnwVr~~af~ 343 (406)
T KOG0295|consen 266 TKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGS--RDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFS 343 (406)
T ss_pred cchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeec--ccceEEEEeccCCeEEEEEecccceeeeeEEc
Confidence 999989999999999999998742 23677776 99999999999999999886 78899999999
Q ss_pred CCCCeEEEEEecCCCcEEEEECCCCccc
Q 014934 387 KNVNELVSTHGYSQNQIIVWRYPTMSKV 414 (415)
Q Consensus 387 ~~~~~l~s~~g~~dg~I~vw~~~s~~~l 414 (415)
|.|++|++ ..+|++|++||+.+++++
T Consensus 344 p~Gkyi~S--caDDktlrvwdl~~~~cm 369 (406)
T KOG0295|consen 344 PGGKYILS--CADDKTLRVWDLKNLQCM 369 (406)
T ss_pred CCCeEEEE--EecCCcEEEEEeccceee
Confidence 99999999 568999999999998876
No 14
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.4e-31 Score=259.37 Aligned_cols=241 Identities=21% Similarity=0.359 Sum_probs=213.6
Q ss_pred CcceeEeecCC-CcEEEEEcC--CeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeee
Q 014934 167 DFYLNLVDWSS-HNVLAVGLG--NCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRV 243 (415)
Q Consensus 167 ~~~i~~l~ws~-~~~la~~~d--~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~ 243 (415)
+..|..+.|+. +++||.|+. |.+-+|+.++...+...+ +|...+++++++|||+++|+|+.||.|+|||...+-|+
T Consensus 307 ~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQ-gH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~ 385 (893)
T KOG0291|consen 307 DQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQ-GHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCF 385 (893)
T ss_pred cceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeecc-ccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEE
Confidence 34578888988 999999976 599999999877655554 89999999999999999999999999999999999999
Q ss_pred EEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEecc-ccCCeEEEEEeCCCCEEEEEeCCC-cEEEEE
Q 014934 244 RTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSG-HKSEVCGLKWSYDNRELASGGNDN-RLFVWN 319 (415)
Q Consensus 244 ~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~-h~~~V~~l~~spdg~~lasg~~dg-~I~iwd 319 (415)
.++..|+..|+.+.|. ++.+++.+-||+|+.||+..... .+++.. ......|++..|.|.++..|+.|. .|+||+
T Consensus 386 vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrN-fRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS 464 (893)
T KOG0291|consen 386 VTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRN-FRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWS 464 (893)
T ss_pred EEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccce-eeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEE
Confidence 9999999999999998 89999999999999999987763 455543 334567899999999999999886 599999
Q ss_pred CCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCC-cEEEEeeCCCCEEEEEECCCCCeEEEEEec
Q 014934 320 QHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTN-THLSCMDTGSQVCNLVWSKNVNELVSTHGY 398 (415)
Q Consensus 320 ~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~-~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~ 398 (415)
+.+|+.+-.+.+|.++|.+++|+|++. +|++++ .|++||+||+-.. ..+.++...+.|..+.|.|+|++|++ ..
T Consensus 465 ~qTGqllDiLsGHEgPVs~l~f~~~~~-~LaS~S--WDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaV--aT 539 (893)
T KOG0291|consen 465 VQTGQLLDILSGHEGPVSGLSFSPDGS-LLASGS--WDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAV--AT 539 (893)
T ss_pred eecCeeeehhcCCCCcceeeEEccccC-eEEecc--ccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEE--EE
Confidence 999999999999999999999999998 999988 9999999998654 45677788899999999999999999 56
Q ss_pred CCCcEEEEECCCCccc
Q 014934 399 SQNQIIVWRYPTMSKV 414 (415)
Q Consensus 399 ~dg~I~vw~~~s~~~l 414 (415)
.||+|.+||...+.++
T Consensus 540 ldgqItf~d~~~~~q~ 555 (893)
T KOG0291|consen 540 LDGQITFFDIKEAVQV 555 (893)
T ss_pred ecceEEEEEhhhceee
Confidence 8999999999887664
No 15
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=8.2e-31 Score=231.96 Aligned_cols=232 Identities=20% Similarity=0.362 Sum_probs=206.1
Q ss_pred cceeEeecCC-CcEEEEE-cCCeEEEEECCCC------CeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCC
Q 014934 168 FYLNLVDWSS-HNVLAVG-LGNCVYLWNACSS------KVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASR 239 (415)
Q Consensus 168 ~~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~------~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~ 239 (415)
.+|...+|+| ++++|+| .|+...||++.+. .+.+.+. +|++.+.|+.|-. ..+|++|+.|.+..+||+++
T Consensus 98 ~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~-gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~ 175 (343)
T KOG0286|consen 98 SWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELA-GHTGYLSCCRFLD-DNHILTGSGDMTCALWDIET 175 (343)
T ss_pred eeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeec-CccceeEEEEEcC-CCceEecCCCceEEEEEccc
Confidence 4688889999 8999988 6899999998854 2233333 8999999999987 45688999999999999999
Q ss_pred CeeeEEecCCCccEEEEEeeC---CEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEE
Q 014934 240 CKRVRTMEGHRLRVGALAWSS---SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLF 316 (415)
Q Consensus 240 ~~~~~~l~~h~~~V~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~ 316 (415)
++.+..|.+|.+.|.++++.| +.+++|+-|+..++||+|.+. .++.+.+|...|++++|.|+|.-|++|+.|++.+
T Consensus 176 g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~-c~qtF~ghesDINsv~ffP~G~afatGSDD~tcR 254 (343)
T KOG0286|consen 176 GQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQ-CVQTFEGHESDINSVRFFPSGDAFATGSDDATCR 254 (343)
T ss_pred ceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcc-eeEeecccccccceEEEccCCCeeeecCCCceeE
Confidence 999999999999999999974 899999999999999999996 7999999999999999999999999999999999
Q ss_pred EEECCCCceeEEecc--CCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee-CCCCEEEEEECCCCCeEE
Q 014934 317 VWNQHSTQPVLKYCE--HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKNVNELV 393 (415)
Q Consensus 317 iwd~~~~~~~~~~~~--h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~-~~~~V~~l~~s~~~~~l~ 393 (415)
+||++..+.+..|.. -..+|++++|+..|+ ||.+|. .|..+.+||.-.++.+..+. |+..|.++..+|||.-++
T Consensus 255 lyDlRaD~~~a~ys~~~~~~gitSv~FS~SGR-lLfagy--~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~ 331 (343)
T KOG0286|consen 255 LYDLRADQELAVYSHDSIICGITSVAFSKSGR-LLFAGY--DDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVA 331 (343)
T ss_pred EEeecCCcEEeeeccCcccCCceeEEEccccc-EEEeee--cCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEE
Confidence 999999988888853 346799999999998 555554 79999999999999888775 789999999999999888
Q ss_pred EEEecCCCcEEEEE
Q 014934 394 STHGYSQNQIIVWR 407 (415)
Q Consensus 394 s~~g~~dg~I~vw~ 407 (415)
+ |+.|..|+||.
T Consensus 332 T--gSWDs~lriW~ 343 (343)
T KOG0286|consen 332 T--GSWDSTLRIWA 343 (343)
T ss_pred e--cchhHheeecC
Confidence 8 89999999994
No 16
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.98 E-value=8.9e-31 Score=237.19 Aligned_cols=236 Identities=22% Similarity=0.384 Sum_probs=215.0
Q ss_pred cceeEeecCC-CcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEE
Q 014934 168 FYLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRT 245 (415)
Q Consensus 168 ~~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~ 245 (415)
-+|.|+++.| +.++++| .|++|.|||+.+|++...+. +|-..|..|++++...||++++.|+.|+.||++..+.++.
T Consensus 152 gWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkltlt-Ghi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~ 230 (460)
T KOG0285|consen 152 GWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLT-GHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRH 230 (460)
T ss_pred ceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeec-chhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHH
Confidence 3799999999 7788888 58999999999999877775 8999999999999999999999999999999999999999
Q ss_pred ecCCCccEEEEEeeC--CEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Q 014934 246 MEGHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHST 323 (415)
Q Consensus 246 l~~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~ 323 (415)
+.+|-..|.|++.+| +.|++|++|.++++||+|+.. .+..+.+|..+|..+.+.|-...+++|+.|++|++||++.+
T Consensus 231 YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~-~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~ag 309 (460)
T KOG0285|consen 231 YHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRA-SVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAG 309 (460)
T ss_pred hccccceeEEEeccccceeEEecCCcceEEEeeecccc-eEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccC
Confidence 999999999999995 799999999999999999988 58999999999999999998889999999999999999999
Q ss_pred ceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee-CCCCEEEEEECCCCCeEEEEEecCCCc
Q 014934 324 QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKNVNELVSTHGYSQNQ 402 (415)
Q Consensus 324 ~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~-~~~~V~~l~~s~~~~~l~s~~g~~dg~ 402 (415)
+....+..|...|.+++.+|.. +++|+++ ...|+-|++..|..++.+. +..-|..+....|+ ++++ |+++|.
T Consensus 310 kt~~tlt~hkksvral~lhP~e-~~fASas---~dnik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~~--G~dng~ 382 (460)
T KOG0285|consen 310 KTMITLTHHKKSVRALCLHPKE-NLFASAS---PDNIKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLVS--GGDNGS 382 (460)
T ss_pred ceeEeeecccceeeEEecCCch-hhhhccC---CccceeccCCccchhhccccccceeeeeeeccCc-eEEE--cCCceE
Confidence 9999999999999999999986 4888886 5679999999999888865 45667888888877 4566 889999
Q ss_pred EEEEECCCCc
Q 014934 403 IIVWRYPTMS 412 (415)
Q Consensus 403 I~vw~~~s~~ 412 (415)
|.+||+.++-
T Consensus 383 ~~fwdwksg~ 392 (460)
T KOG0285|consen 383 IMFWDWKSGH 392 (460)
T ss_pred EEEEecCcCc
Confidence 9999998864
No 17
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.98 E-value=5.3e-30 Score=256.63 Aligned_cols=240 Identities=24% Similarity=0.402 Sum_probs=208.1
Q ss_pred CcceeEeecCC-CcEEEEE-cCCeEEEEECCCCC--eEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEEC-CCCe
Q 014934 167 DFYLNLVDWSS-HNVLAVG-LGNCVYLWNACSSK--VTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDA-SRCK 241 (415)
Q Consensus 167 ~~~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~--~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~-~~~~ 241 (415)
...+.++++++ ++.++.+ .++.+++|+..+.+ ..... .+|...|.+++|+|+|+++++|+.|++|+|||+ ..+.
T Consensus 159 ~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l-~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~ 237 (456)
T KOG0266|consen 159 CPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLREL-SGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGR 237 (456)
T ss_pred cCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccc-cccccceeeeEECCCCcEEEEecCCceEEEeeccCCCe
Confidence 34688899999 7777777 68999999997766 44444 389999999999999999999999999999999 5568
Q ss_pred eeEEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEE
Q 014934 242 RVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWN 319 (415)
Q Consensus 242 ~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd 319 (415)
.++++.+|...|++++|+ ++++++|+.|++|++||+++++ +...+.+|.+.|.+++|++++++|++++.|+.|+|||
T Consensus 238 ~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~-~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd 316 (456)
T KOG0266|consen 238 NLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGE-CVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWD 316 (456)
T ss_pred EEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCe-EEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEE
Confidence 999999999999999999 5799999999999999999976 7899999999999999999999999999999999999
Q ss_pred CCCCc--eeEEeccCCCc--EEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee-CCC---CEEEEEECCCCCe
Q 014934 320 QHSTQ--PVLKYCEHTAA--VKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGS---QVCNLVWSKNVNE 391 (415)
Q Consensus 320 ~~~~~--~~~~~~~h~~~--V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~-~~~---~V~~l~~s~~~~~ 391 (415)
+.++. ++..+..+... +..++|+|++.++++.. .|+.+++||+..+..+..+. +.. .+.+...++.+.+
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~---~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (456)
T KOG0266|consen 317 LETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSAS---LDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKL 393 (456)
T ss_pred CCCCceeeeecccCCCCCCceeEEEECCCCcEEEEec---CCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCe
Confidence 99998 56777776666 99999999999666644 79999999999998888776 323 2344556788999
Q ss_pred EEEEEecCCCcEEEEECCCCcc
Q 014934 392 LVSTHGYSQNQIIVWRYPTMSK 413 (415)
Q Consensus 392 l~s~~g~~dg~I~vw~~~s~~~ 413 (415)
+++ |+.|+.|++|++.++..
T Consensus 394 i~s--g~~d~~v~~~~~~s~~~ 413 (456)
T KOG0266|consen 394 IYS--GSEDGSVYVWDSSSGGI 413 (456)
T ss_pred EEE--EeCCceEEEEeCCccch
Confidence 998 89999999999998654
No 18
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.98 E-value=6.1e-32 Score=248.43 Aligned_cols=250 Identities=22% Similarity=0.384 Sum_probs=212.2
Q ss_pred ceeccCCCCCCCcceeEeecCC-CcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEE
Q 014934 156 YKILDAPALQDDFYLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQ 233 (415)
Q Consensus 156 ~~~ld~~~l~~~~~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~ 233 (415)
.+...+...+....|+.|.|.| ++-|.+| ..|.+.+|+..+-....+. ..|.+.|+++.|+++|.++++|..+|.|+
T Consensus 85 tKf~h~s~NKvkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtil-QaHDs~Vr~m~ws~~g~wmiSgD~gG~iK 163 (464)
T KOG0284|consen 85 TKFVHTSSNKVKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETIL-QAHDSPVRTMKWSHNGTWMISGDKGGMIK 163 (464)
T ss_pred cceEeccccccccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHh-hhhcccceeEEEccCCCEEEEcCCCceEE
Confidence 3444444445566799999999 5655555 5699999998443332222 28999999999999999999999999999
Q ss_pred EEECCCCeeeEEecC-CCccEEEEEeeC--CEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEe
Q 014934 234 IWDASRCKRVRTMEG-HRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGG 310 (415)
Q Consensus 234 iwd~~~~~~~~~l~~-h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~ 310 (415)
+|+..-.. +..+.+ |...|.+++|++ ..|++++.||+|+|||.+... ....+.+|...|.++.|+|...++|+|+
T Consensus 164 yWqpnmnn-Vk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~k-ee~vL~GHgwdVksvdWHP~kgLiasgs 241 (464)
T KOG0284|consen 164 YWQPNMNN-VKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPK-EERVLRGHGWDVKSVDWHPTKGLIASGS 241 (464)
T ss_pred ecccchhh-hHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCc-hhheeccCCCCcceeccCCccceeEEcc
Confidence 99987544 444444 559999999994 689999999999999999877 4667899999999999999999999999
Q ss_pred CCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee-CCCCEEEEEECCCC
Q 014934 311 NDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKNV 389 (415)
Q Consensus 311 ~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~-~~~~V~~l~~s~~~ 389 (415)
.|+.|++||.+++.++.++.+|+..|.++.|+|+++ +|++++ .|..++++|+++.+.+..+. |...|.++.|+|-.
T Consensus 242 kDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N-~Llt~s--kD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~ 318 (464)
T KOG0284|consen 242 KDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGN-WLLTGS--KDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLN 318 (464)
T ss_pred CCceeEeecCCCcchhhhhhhccceEEEEEEcCCCC-eeEEcc--CCceEEEEehhHhHHHHHhhcchhhheeecccccc
Confidence 999999999999999999999999999999999995 777776 99999999999888888887 78899999999988
Q ss_pred CeEEEEEecCCCcEEEEECCCCc
Q 014934 390 NELVSTHGYSQNQIIVWRYPTMS 412 (415)
Q Consensus 390 ~~l~s~~g~~dg~I~vw~~~s~~ 412 (415)
.-|+++ |+.||.|..|.+...+
T Consensus 319 ~~lfts-gg~Dgsvvh~~v~~~~ 340 (464)
T KOG0284|consen 319 ESLFTS-GGSDGSVVHWVVGLEE 340 (464)
T ss_pred ccceee-ccCCCceEEEeccccc
Confidence 877776 7799999999988443
No 19
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=1.4e-28 Score=246.21 Aligned_cols=241 Identities=18% Similarity=0.322 Sum_probs=190.4
Q ss_pred eeEeecCCCcEEEEEcCCeEEEEECCCC----------CeEE---eEecCCCCCeEEEEEcC-CCCeEEEEECCCcEEEE
Q 014934 170 LNLVDWSSHNVLAVGLGNCVYLWNACSS----------KVTK---LCDLGIDDSVCSVGWAN-RNTHLAVGTSHGKVQIW 235 (415)
Q Consensus 170 i~~l~ws~~~~la~~~d~~V~iwd~~~~----------~~~~---~~~~~~~~~V~~v~~sp-~g~~la~g~~dg~V~iw 235 (415)
+....|...+++++..+..+..|+...+ +... .+ .+|.+.|++++|+| ++++||+|+.||+|+||
T Consensus 25 ~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l-~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIW 103 (493)
T PTZ00421 25 PSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPIL-LGQEGPIIDVAFNPFDPQKLFTASEDGTIMGW 103 (493)
T ss_pred cccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceE-eCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEE
Confidence 4445566556666555555555654333 2111 22 27899999999999 88999999999999999
Q ss_pred ECCCC-------eeeEEecCCCccEEEEEeeC---CEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCE
Q 014934 236 DASRC-------KRVRTMEGHRLRVGALAWSS---SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRE 305 (415)
Q Consensus 236 d~~~~-------~~~~~l~~h~~~V~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 305 (415)
|+.++ +.+..+.+|...|.+++|++ ++|++|+.|++|++||++++. ....+.+|...|.+++|+|+|.+
T Consensus 104 di~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~-~~~~l~~h~~~V~sla~spdG~l 182 (493)
T PTZ00421 104 GIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGK-AVEVIKCHSDQITSLEWNLDGSL 182 (493)
T ss_pred ecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCe-EEEEEcCCCCceEEEEEECCCCE
Confidence 99764 35678899999999999984 589999999999999999876 57778899999999999999999
Q ss_pred EEEEeCCCcEEEEECCCCceeEEeccCCCc-EEEEEEcCCCCcEEEEEc-CCCCCeEEEEECCCCc-EEEEee--CCCCE
Q 014934 306 LASGGNDNRLFVWNQHSTQPVLKYCEHTAA-VKAIAWSPHLHGLLASGG-GTADRCIRFWNTTTNT-HLSCMD--TGSQV 380 (415)
Q Consensus 306 lasg~~dg~I~iwd~~~~~~~~~~~~h~~~-V~~l~~sp~~~~llasgg-g~~d~~I~iwd~~t~~-~~~~~~--~~~~V 380 (415)
|++|+.|+.|+|||+++++.+..+.+|.+. +..+.|.+++..++++|. ++.|+.|++||+++.. .+.... ....+
T Consensus 183 Latgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~ 262 (493)
T PTZ00421 183 LCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSAL 262 (493)
T ss_pred EEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCce
Confidence 999999999999999999999999888765 457889998875665542 2358999999998754 343333 34556
Q ss_pred EEEEECCCCCeEEEEEecCCCcEEEEECCCCcc
Q 014934 381 CNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSK 413 (415)
Q Consensus 381 ~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~~ 413 (415)
....|+++++.|+++ |..|+.|++|++.+.+.
T Consensus 263 ~~~~~d~d~~~L~lg-gkgDg~Iriwdl~~~~~ 294 (493)
T PTZ00421 263 FIPFFDEDTNLLYIG-SKGEGNIRCFELMNERL 294 (493)
T ss_pred EEEEEcCCCCEEEEE-EeCCCeEEEEEeeCCce
Confidence 677899999998884 44599999999987653
No 20
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=2.5e-28 Score=226.15 Aligned_cols=238 Identities=28% Similarity=0.437 Sum_probs=208.2
Q ss_pred cceeEeecCC-CcEEEEEc-CCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEE
Q 014934 168 FYLNLVDWSS-HNVLAVGL-GNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRT 245 (415)
Q Consensus 168 ~~i~~l~ws~-~~~la~~~-d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~ 245 (415)
-.|++++|++ +++|+++. ++.|++|+..+++...... .|...+..+.|++++++|++++.+|.|.+||+.+++.+..
T Consensus 10 ~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~ 88 (289)
T cd00200 10 GGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLK-GHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRT 88 (289)
T ss_pred CCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEe-cCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEE
Confidence 3589999999 57777775 8999999999887666654 6778899999999999999999999999999998888888
Q ss_pred ecCCCccEEEEEeeC--CEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Q 014934 246 MEGHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHST 323 (415)
Q Consensus 246 l~~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~ 323 (415)
+..|...+.++.|++ .++++++.|+.|.+||+++.. ....+..|...|.+++|+|++.++++++.|+.|++||++++
T Consensus 89 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~ 167 (289)
T cd00200 89 LTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGK-CLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTG 167 (289)
T ss_pred EeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcE-EEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEcccc
Confidence 889999999999995 678888789999999998765 56677789999999999999999999988999999999999
Q ss_pred ceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEe-eCCCCEEEEEECCCCCeEEEEEecCCCc
Q 014934 324 QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCM-DTGSQVCNLVWSKNVNELVSTHGYSQNQ 402 (415)
Q Consensus 324 ~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~-~~~~~V~~l~~s~~~~~l~s~~g~~dg~ 402 (415)
+.+..+..|...|.+++|+|++..+++ ++ .|+.|++||+.+++.+..+ .+...+.++.|++++..+++ +..++.
T Consensus 168 ~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~--~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~ 242 (289)
T cd00200 168 KCVATLTGHTGEVNSVAFSPDGEKLLS-SS--SDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLAS--GSEDGT 242 (289)
T ss_pred ccceeEecCccccceEEECCCcCEEEE-ec--CCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEE--EcCCCc
Confidence 999999899999999999999874555 43 5999999999999988888 56779999999999877777 667999
Q ss_pred EEEEECCCCc
Q 014934 403 IIVWRYPTMS 412 (415)
Q Consensus 403 I~vw~~~s~~ 412 (415)
|++|++.+.+
T Consensus 243 i~i~~~~~~~ 252 (289)
T cd00200 243 IRVWDLRTGE 252 (289)
T ss_pred EEEEEcCCce
Confidence 9999998654
No 21
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.9e-30 Score=224.44 Aligned_cols=235 Identities=28% Similarity=0.474 Sum_probs=198.5
Q ss_pred ceeEeecCC---CcEEEEEcCCeEEEEECCCC-CeEEeEecCCCCCeEEEEEcC-CCCeEEEEECCCcEEEEECCCCeee
Q 014934 169 YLNLVDWSS---HNVLAVGLGNCVYLWNACSS-KVTKLCDLGIDDSVCSVGWAN-RNTHLAVGTSHGKVQIWDASRCKRV 243 (415)
Q Consensus 169 ~i~~l~ws~---~~~la~~~d~~V~iwd~~~~-~~~~~~~~~~~~~V~~v~~sp-~g~~la~g~~dg~V~iwd~~~~~~~ 243 (415)
.+--++|++ +.+++++.||+++|||.... ..+..++ +|..+|.++.|++ ++..+++++-||+|++|+....+.+
T Consensus 62 ~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~k-EH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv 140 (311)
T KOG0277|consen 62 GLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFK-EHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSV 140 (311)
T ss_pred ceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHH-hhhhheEEeccccccceeEEeeccCCceEeecCCCCcce
Confidence 366889998 34566668999999995433 3344444 8999999999998 5677888899999999999999999
Q ss_pred EEecCCCccEEEEEee---CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeC-CCCEEEEEeCCCcEEEEE
Q 014934 244 RTMEGHRLRVGALAWS---SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSY-DNRELASGGNDNRLFVWN 319 (415)
Q Consensus 244 ~~l~~h~~~V~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~lasg~~dg~I~iwd 319 (415)
.++.+|...|...+|+ ++.+++++.|+++++||++...+.+ .+..|..+|.++.|+. +.+.|+||+.|+.|++||
T Consensus 141 ~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~-~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wD 219 (311)
T KOG0277|consen 141 QTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFM-SIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWD 219 (311)
T ss_pred EeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCcee-EEEeccceeEeecccccCCcEEEecCCCceEEEEe
Confidence 9999999999999999 5899999999999999999987544 4889999999999997 778899999999999999
Q ss_pred CCCC-ceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCc-EEEEee-CCCCEEEEEECCCCCeEEEEE
Q 014934 320 QHST-QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNT-HLSCMD-TGSQVCNLVWSKNVNELVSTH 396 (415)
Q Consensus 320 ~~~~-~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~-~~~~~~-~~~~V~~l~~s~~~~~l~s~~ 396 (415)
+++- .++..+.+|.-+|..++|+|....+||+++ .|-+++|||...+. ++..++ |...|+++.|++...-.++.
T Consensus 220 ir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSas--YDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs- 296 (311)
T KOG0277|consen 220 IRNLRTPLFELNGHGLAVRKVKFSPHHASLLASAS--YDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVAS- 296 (311)
T ss_pred hhhccccceeecCCceEEEEEecCcchhhHhhhcc--ccceEEecccccchhhhhhhhccceEEeccccccccCceeee-
Confidence 9875 678899999999999999999999999998 99999999998554 344444 45669999999975444444
Q ss_pred ecCCCcEEEEEC
Q 014934 397 GYSQNQIIVWRY 408 (415)
Q Consensus 397 g~~dg~I~vw~~ 408 (415)
.+-|+.++||+-
T Consensus 297 ~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 297 TGWDELLYVWNP 308 (311)
T ss_pred cccccceeeecc
Confidence 347999999984
No 22
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=2.4e-31 Score=240.08 Aligned_cols=230 Identities=21% Similarity=0.386 Sum_probs=204.5
Q ss_pred ceeEeecCCCcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEecC
Q 014934 169 YLNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEG 248 (415)
Q Consensus 169 ~i~~l~ws~~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~ 248 (415)
.|.|+.+..+.++....|++|+|||..+-.+.+.+. +|++.|.|+.|. .+.|++|+.|.+|++||.++++++.++-+
T Consensus 199 gVYClQYDD~kiVSGlrDnTikiWD~n~~~c~~~L~-GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~tlih 275 (499)
T KOG0281|consen 199 GVYCLQYDDEKIVSGLRDNTIKIWDKNSLECLKILT-GHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTLIH 275 (499)
T ss_pred ceEEEEecchhhhcccccCceEEeccccHHHHHhhh-cCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhHHhh
Confidence 477999987777777789999999999988887776 999999999985 55999999999999999999999999999
Q ss_pred CCccEEEEEeeCCEEEEEeCCCcEEEEECCCCCc--cEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCcee
Q 014934 249 HRLRVGALAWSSSLLSSGSRDKSILQRDIRAQED--FVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPV 326 (415)
Q Consensus 249 h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~--~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~ 326 (415)
|...|..+.|+.+++++++.|.+|.+||+..... +.+.+.||...|+.+.|+ .+++++++.|.+|++|++.+++.+
T Consensus 276 HceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efv 353 (499)
T KOG0281|consen 276 HCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFV 353 (499)
T ss_pred hcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceeee
Confidence 9999999999999999999999999999987752 345678999999999996 569999999999999999999999
Q ss_pred EEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee-CCCCEEEEEECCCCCeEEEEEecCCCcEEE
Q 014934 327 LKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKNVNELVSTHGYSQNQIIV 405 (415)
Q Consensus 327 ~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~-~~~~V~~l~~s~~~~~l~s~~g~~dg~I~v 405 (415)
.++.+|+..|.|+.+. + .++++|+ .|.+|++||+..|.++..++ |..-|.++.|. .+.+++ |.-||+|+|
T Consensus 354 Rtl~gHkRGIAClQYr--~-rlvVSGS--SDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVS--GaYDGkikv 424 (499)
T KOG0281|consen 354 RTLNGHKRGIACLQYR--D-RLVVSGS--SDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVS--GAYDGKIKV 424 (499)
T ss_pred hhhhcccccceehhcc--C-eEEEecC--CCceEEEEeccccHHHHHHhchHHhhhheeec--Cceeee--ccccceEEE
Confidence 9999999999888765 3 3888887 99999999999999999887 55668889985 567888 888999999
Q ss_pred EECCCCc
Q 014934 406 WRYPTMS 412 (415)
Q Consensus 406 w~~~s~~ 412 (415)
||+....
T Consensus 425 Wdl~aal 431 (499)
T KOG0281|consen 425 WDLQAAL 431 (499)
T ss_pred Eeccccc
Confidence 9998754
No 23
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.97 E-value=5e-29 Score=232.95 Aligned_cols=234 Identities=24% Similarity=0.446 Sum_probs=210.4
Q ss_pred cceeEeecCC-CcEEEE-EcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEE
Q 014934 168 FYLNLVDWSS-HNVLAV-GLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRT 245 (415)
Q Consensus 168 ~~i~~l~ws~-~~~la~-~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~ 245 (415)
-.|..+.|+. +++|++ +.|+++.+||..++.+.+.+.+ |..+-..|.|-.+ ..+++++.||.|+++.+....++.+
T Consensus 277 gPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~-~s~~~lDVdW~~~-~~F~ts~td~~i~V~kv~~~~P~~t 354 (524)
T KOG0273|consen 277 GPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEF-HSAPALDVDWQSN-DEFATSSTDGCIHVCKVGEDRPVKT 354 (524)
T ss_pred CceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeee-ccCCccceEEecC-ceEeecCCCceEEEEEecCCCccee
Confidence 3588999999 555555 5799999999999999988874 4555578899754 4588889999999999999999999
Q ss_pred ecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCC---------CEEEEEeCCCc
Q 014934 246 MEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDN---------RELASGGNDNR 314 (415)
Q Consensus 246 l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg---------~~lasg~~dg~ 314 (415)
+.+|.+.|.+|.|+ +.+|++++.|++++||...... ..+.+.+|..+|..+.|+|+| ..+|+++.|++
T Consensus 355 ~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~-~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dst 433 (524)
T KOG0273|consen 355 FIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSN-SVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDST 433 (524)
T ss_pred eecccCceEEEEECCCCceEEEecCCCeeEeeecCCCc-chhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCe
Confidence 99999999999999 6899999999999999987766 678899999999999999964 47999999999
Q ss_pred EEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEE
Q 014934 315 LFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVS 394 (415)
Q Consensus 315 I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s 394 (415)
|++||+..+.+++.|..|+.+|.+++|+|+|+ ++|+|+ .||.|.+|++++++.+++......|..++|+.+|..|.+
T Consensus 434 V~lwdv~~gv~i~~f~kH~~pVysvafS~~g~-ylAsGs--~dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~~ 510 (524)
T KOG0273|consen 434 VKLWDVESGVPIHTLMKHQEPVYSVAFSPNGR-YLASGS--LDGCVHIWSTKTGKLVKSYQGTGGIFELCWNAAGDKLGA 510 (524)
T ss_pred EEEEEccCCceeEeeccCCCceEEEEecCCCc-EEEecC--CCCeeEeccccchheeEeecCCCeEEEEEEcCCCCEEEE
Confidence 99999999999999999999999999999998 788877 999999999999999999998888999999999999988
Q ss_pred EEecCCCcEEEEECC
Q 014934 395 THGYSQNQIIVWRYP 409 (415)
Q Consensus 395 ~~g~~dg~I~vw~~~ 409 (415)
..+|+.+++-|+.
T Consensus 511 --~~sd~~vcvldlr 523 (524)
T KOG0273|consen 511 --CASDGSVCVLDLR 523 (524)
T ss_pred --EecCCCceEEEec
Confidence 6789999998874
No 24
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.97 E-value=8e-30 Score=251.77 Aligned_cols=195 Identities=25% Similarity=0.406 Sum_probs=182.4
Q ss_pred cceeEeecCC-CcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEE
Q 014934 168 FYLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRT 245 (415)
Q Consensus 168 ~~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~ 245 (415)
-.|....|+| .++|..+ .|.+|++|.+.+......+. +|..+|..|.|+|.|-++|+|+.|++.++|........+.
T Consensus 452 GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~-GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRi 530 (707)
T KOG0263|consen 452 GPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYK-GHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRI 530 (707)
T ss_pred CceeeeeecccccceeeccCCcceeeeecccceeEEEec-CCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhh
Confidence 3578899999 6666666 57999999999998888887 9999999999999999999999999999999999999999
Q ss_pred ecCCCccEEEEEeeC--CEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Q 014934 246 MEGHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHST 323 (415)
Q Consensus 246 l~~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~ 323 (415)
+.+|.+.|.|+.|+| +++++||.|.++++||+.++. .++.+.||.++|.+|+|||+|++||+|+.||.|.|||+.++
T Consensus 531 faghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~-~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~ 609 (707)
T KOG0263|consen 531 FAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGN-SVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANG 609 (707)
T ss_pred hcccccccceEEECCcccccccCCCCceEEEEEcCCCc-EEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCC
Confidence 999999999999995 799999999999999999998 68999999999999999999999999999999999999999
Q ss_pred ceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCC
Q 014934 324 QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTT 367 (415)
Q Consensus 324 ~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t 367 (415)
+.+..+.+|++.|.++.|+.+|. +||+|| .|.+|++||+..
T Consensus 610 ~~v~~l~~Ht~ti~SlsFS~dg~-vLasgg--~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 610 SLVKQLKGHTGTIYSLSFSRDGN-VLASGG--ADNSVRLWDLTK 650 (707)
T ss_pred cchhhhhcccCceeEEEEecCCC-EEEecC--CCCeEEEEEchh
Confidence 99999999999999999999997 888887 799999999864
No 25
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.1e-29 Score=244.17 Aligned_cols=239 Identities=18% Similarity=0.326 Sum_probs=217.9
Q ss_pred ceeEeecCC-CcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEe
Q 014934 169 YLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTM 246 (415)
Q Consensus 169 ~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l 246 (415)
.|-+++++| .-++.++ ..|.|.|||.++...++.++. ..-+|.+..|-+..+++++|+.|..|+||+..+++.+..+
T Consensus 15 RVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV-~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~F 93 (794)
T KOG0276|consen 15 RVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEV-SEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTF 93 (794)
T ss_pred ceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeee-cccchhhheeeeccceEEEecCCceEEEEecccceeeEEe
Confidence 477999999 5555555 689999999999988888874 3578999999999999999999999999999999999999
Q ss_pred cCCCccEEEEEeeC--CEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeC-CCCEEEEEeCCCcEEEEECCCC
Q 014934 247 EGHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSY-DNRELASGGNDNRLFVWNQHST 323 (415)
Q Consensus 247 ~~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~lasg~~dg~I~iwd~~~~ 323 (415)
+.|...|.+++.+| -+++++|.|-+|++||.+..-.+.+++.+|..-|.+++|+| |.+.||+++-|++|+||.+.+.
T Consensus 94 eAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~ 173 (794)
T KOG0276|consen 94 EAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSP 173 (794)
T ss_pred eccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCC
Confidence 99999999999996 58999999999999999998888899999999999999999 7789999999999999999999
Q ss_pred ceeEEeccCCCcEEEEEEcCCCC-cEEEEEcCCCCCeEEEEECCCCcEEEEee-CCCCEEEEEECCCCCeEEEEEecCCC
Q 014934 324 QPVLKYCEHTAAVKAIAWSPHLH-GLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKNVNELVSTHGYSQN 401 (415)
Q Consensus 324 ~~~~~~~~h~~~V~~l~~sp~~~-~llasggg~~d~~I~iwd~~t~~~~~~~~-~~~~V~~l~~s~~~~~l~s~~g~~dg 401 (415)
.+..++++|...|+++.+-+.|. -.|++|+ .|.+|+|||..+..|+++++ |...|..+.|+|.-..+++ |++||
T Consensus 174 ~~nfTl~gHekGVN~Vdyy~~gdkpylIsga--DD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiis--gsEDG 249 (794)
T KOG0276|consen 174 HPNFTLEGHEKGVNCVDYYTGGDKPYLISGA--DDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIIS--GSEDG 249 (794)
T ss_pred CCceeeeccccCcceEEeccCCCcceEEecC--CCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEE--ecCCc
Confidence 99999999999999999988763 3666766 89999999999999999998 6678999999999999999 99999
Q ss_pred cEEEEECCCCc
Q 014934 402 QIIVWRYPTMS 412 (415)
Q Consensus 402 ~I~vw~~~s~~ 412 (415)
+++||+-.+.+
T Consensus 250 TvriWhs~Ty~ 260 (794)
T KOG0276|consen 250 TVRIWNSKTYK 260 (794)
T ss_pred cEEEecCccee
Confidence 99999987754
No 26
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=1.9e-28 Score=245.34 Aligned_cols=242 Identities=25% Similarity=0.372 Sum_probs=208.6
Q ss_pred CCCcceeEeecCC-CcEEEEE-cCCeEEEEEC-CCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCe
Q 014934 165 QDDFYLNLVDWSS-HNVLAVG-LGNCVYLWNA-CSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCK 241 (415)
Q Consensus 165 ~~~~~i~~l~ws~-~~~la~~-~d~~V~iwd~-~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~ 241 (415)
.....|+.++|+| +.+++.+ .|.+|+|||+ ..+..++.+. +|...|++++|+|+|+++++|+.|++|+|||+++++
T Consensus 201 ~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~-gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~ 279 (456)
T KOG0266|consen 201 GHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLK-GHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGE 279 (456)
T ss_pred ccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEec-CCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCe
Confidence 4567899999999 6677776 5789999999 5557777776 999999999999999999999999999999999999
Q ss_pred eeEEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCc-cEEEeccccCC--eEEEEEeCCCCEEEEEeCCCcEE
Q 014934 242 RVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQED-FVSKLSGHKSE--VCGLKWSYDNRELASGGNDNRLF 316 (415)
Q Consensus 242 ~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~-~~~~~~~h~~~--V~~l~~spdg~~lasg~~dg~I~ 316 (415)
+++.+.+|...|++++|+ +++|++++.|+.|++||+.++.. +...+.++... ++.++|+|++.+|+++..|+.++
T Consensus 280 ~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~ 359 (456)
T KOG0266|consen 280 CVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLK 359 (456)
T ss_pred EEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEE
Confidence 999999999999999998 68999999999999999998873 24556666555 99999999999999999999999
Q ss_pred EEECCCCceeEEeccCCCcE---EEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee-C-CCCEEEEEECCCCCe
Q 014934 317 VWNQHSTQPVLKYCEHTAAV---KAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-T-GSQVCNLVWSKNVNE 391 (415)
Q Consensus 317 iwd~~~~~~~~~~~~h~~~V---~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~-~-~~~V~~l~~s~~~~~ 391 (415)
+||+..+..+..+.+|...+ .+...++.+. ++.+|+ .|+.|++||+.++..+..+. + ...+..+.|++..++
T Consensus 360 ~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~sg~--~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~ 436 (456)
T KOG0266|consen 360 LWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGK-LIYSGS--EDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENL 436 (456)
T ss_pred EEEccCCcceeeecccCCcceeEecccccCCCC-eEEEEe--CCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCe
Confidence 99999999999999988754 3334466666 666666 89999999999988888776 4 577899999999999
Q ss_pred EEEEEecCCCcEEEEECCC
Q 014934 392 LVSTHGYSQNQIIVWRYPT 410 (415)
Q Consensus 392 l~s~~g~~dg~I~vw~~~s 410 (415)
+++.....|+.|++|.++-
T Consensus 437 ~~s~s~~~d~~~~~w~~~~ 455 (456)
T KOG0266|consen 437 IASSSFEGDGLIRLWKYDF 455 (456)
T ss_pred eeecCcCCCceEEEecCCC
Confidence 9995434789999999763
No 27
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.97 E-value=1.1e-28 Score=219.35 Aligned_cols=238 Identities=21% Similarity=0.352 Sum_probs=201.8
Q ss_pred cceeEeecCC-CcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEE
Q 014934 168 FYLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRT 245 (415)
Q Consensus 168 ~~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~ 245 (415)
-.|+.+.|+| +.++|+| .|..|.+|+............+|.+.|..+.|.+|++.|++++.|.+|+.||++++++++.
T Consensus 48 geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk 127 (338)
T KOG0265|consen 48 GEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRK 127 (338)
T ss_pred ceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeeh
Confidence 3488999999 7777777 6899999996554332222238999999999999999999999999999999999999999
Q ss_pred ecCCCccEEEEEee---CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCC
Q 014934 246 MEGHRLRVGALAWS---SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHS 322 (415)
Q Consensus 246 l~~h~~~V~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~ 322 (415)
+++|..-|+.+... +.++.+|+.||++++||+|... .++++. .+.+++++.|..++..+.+|+-|+.|++||++.
T Consensus 128 ~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~-~~~t~~-~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~ 205 (338)
T KOG0265|consen 128 HKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKE-AIKTFE-NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRK 205 (338)
T ss_pred hccccceeeecCccccCCeEEEecCCCceEEEEeecccc-hhhccc-cceeEEEEEecccccceeeccccCceeeecccc
Confidence 99999999999865 5789999999999999999877 344443 456899999999999999999999999999999
Q ss_pred CceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCC----cEEEEeeC-----CCCEEEEEECCCCCeEE
Q 014934 323 TQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTN----THLSCMDT-----GSQVCNLVWSKNVNELV 393 (415)
Q Consensus 323 ~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~----~~~~~~~~-----~~~V~~l~~s~~~~~l~ 393 (415)
...++.+.+|...|+.+..+|+|..++. -+ .|.++++||++-- .++..+.. +.....++|+|+++.+.
T Consensus 206 ~d~~~~lsGh~DtIt~lsls~~gs~lls-ns--Md~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ 282 (338)
T KOG0265|consen 206 NDGLYTLSGHADTITGLSLSRYGSFLLS-NS--MDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKIT 282 (338)
T ss_pred CcceEEeecccCceeeEEeccCCCcccc-cc--ccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccc
Confidence 9999999999999999999999985555 33 8999999999752 33554432 23366789999999998
Q ss_pred EEEecCCCcEEEEECCCCc
Q 014934 394 STHGYSQNQIIVWRYPTMS 412 (415)
Q Consensus 394 s~~g~~dg~I~vw~~~s~~ 412 (415)
+ |+.|..+++||..+..
T Consensus 283 a--gs~dr~vyvwd~~~r~ 299 (338)
T KOG0265|consen 283 A--GSADRFVYVWDTTSRR 299 (338)
T ss_pred c--ccccceEEEeeccccc
Confidence 8 8999999999987744
No 28
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=6.4e-28 Score=211.66 Aligned_cols=232 Identities=25% Similarity=0.378 Sum_probs=194.9
Q ss_pred ceeEeecCCC--cEEEEE-cCCeEEEEECCCCC---eEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCC--C
Q 014934 169 YLNLVDWSSH--NVLAVG-LGNCVYLWNACSSK---VTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASR--C 240 (415)
Q Consensus 169 ~i~~l~ws~~--~~la~~-~d~~V~iwd~~~~~---~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~--~ 240 (415)
.+..++|+|+ .+||++ .|..|+||+...+. +...+.-+|...|.+|+|+|.|++||+|+.|.++.||.-.. .
T Consensus 16 r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~ef 95 (312)
T KOG0645|consen 16 RVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEF 95 (312)
T ss_pred cEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCce
Confidence 4778999995 478877 47899999988432 33333337899999999999999999999999999998654 4
Q ss_pred eeeEEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCC--ccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEE
Q 014934 241 KRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQE--DFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLF 316 (415)
Q Consensus 241 ~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~--~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~ 316 (415)
+++.+++||...|.|++|+ +++|+++++|+.|-||.+.... .+...++.|.+.|..+.|+|...+|++++.|++|+
T Consensus 96 ecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk 175 (312)
T KOG0645|consen 96 ECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIK 175 (312)
T ss_pred eEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEE
Confidence 7899999999999999998 7999999999999999998544 45778999999999999999999999999999999
Q ss_pred EEECC---CCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEE
Q 014934 317 VWNQH---STQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELV 393 (415)
Q Consensus 317 iwd~~---~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~ 393 (415)
+|+-. ...+++++.+|...|.+++|++.|. -|++++ .|++++||-..+.- ...+..+++.+.|. ...|+
T Consensus 176 ~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~-rl~s~s--dD~tv~Iw~~~~~~---~~~~sr~~Y~v~W~--~~~Ia 247 (312)
T KOG0645|consen 176 VYRDEDDDDWECVQTLDGHENTVWSLAFDNIGS-RLVSCS--DDGTVSIWRLYTDL---SGMHSRALYDVPWD--NGVIA 247 (312)
T ss_pred EEeecCCCCeeEEEEecCccceEEEEEecCCCc-eEEEec--CCcceEeeeeccCc---chhcccceEeeeec--ccceE
Confidence 99876 3468899999999999999999996 666666 89999999876331 11256789999999 34566
Q ss_pred EEEecCCCcEEEEECCC
Q 014934 394 STHGYSQNQIIVWRYPT 410 (415)
Q Consensus 394 s~~g~~dg~I~vw~~~s 410 (415)
+ ++.|+.|++|.-..
T Consensus 248 S--~ggD~~i~lf~~s~ 262 (312)
T KOG0645|consen 248 S--GGGDDAIRLFKESD 262 (312)
T ss_pred e--ccCCCEEEEEEecC
Confidence 6 66799999998653
No 29
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=2e-27 Score=220.06 Aligned_cols=232 Identities=27% Similarity=0.464 Sum_probs=202.8
Q ss_pred ceeEeecCC-CcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEe
Q 014934 169 YLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTM 246 (415)
Q Consensus 169 ~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l 246 (415)
.+..+.|++ ++.|+++ .++.|++|+..+++....+. .|...|.++.|++++.++++++.+|.|.+||+.+++.+..+
T Consensus 53 ~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 131 (289)
T cd00200 53 PVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLT-GHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTL 131 (289)
T ss_pred ceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEe-ccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEe
Confidence 467889999 5456555 58999999999877666665 67779999999999999988888999999999999988889
Q ss_pred cCCCccEEEEEeeC--CEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCc
Q 014934 247 EGHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQ 324 (415)
Q Consensus 247 ~~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~ 324 (415)
..|...|.+++|++ .++++++.|+.|++||++... ....+..|...|.++.|+|+++.|++++.|+.|++||++.++
T Consensus 132 ~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~ 210 (289)
T cd00200 132 RGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGK-CVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGK 210 (289)
T ss_pred ccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccc-cceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCc
Confidence 99999999999995 677777779999999998766 466777888899999999999999999999999999999999
Q ss_pred eeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee-CCCCEEEEEECCCCCeEEEEEecCCCcE
Q 014934 325 PVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKNVNELVSTHGYSQNQI 403 (415)
Q Consensus 325 ~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~-~~~~V~~l~~s~~~~~l~s~~g~~dg~I 403 (415)
.+..+..|...+.+++|+|++. ++++++ .|+.|++||+.+++.+..+. +...|.++.|+++++.|++ ++.|+.|
T Consensus 211 ~~~~~~~~~~~i~~~~~~~~~~-~~~~~~--~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~--~~~d~~i 285 (289)
T cd00200 211 CLGTLRGHENGVNSVAFSPDGY-LLASGS--EDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLAS--GSADGTI 285 (289)
T ss_pred eecchhhcCCceEEEEEcCCCc-EEEEEc--CCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEE--ecCCCeE
Confidence 9988888999999999999954 777765 79999999999988887776 5568999999999999998 7789999
Q ss_pred EEEE
Q 014934 404 IVWR 407 (415)
Q Consensus 404 ~vw~ 407 (415)
++|+
T Consensus 286 ~iw~ 289 (289)
T cd00200 286 RIWD 289 (289)
T ss_pred EecC
Confidence 9996
No 30
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=3e-28 Score=238.84 Aligned_cols=236 Identities=23% Similarity=0.398 Sum_probs=203.4
Q ss_pred cceeEeecCC-CcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEE
Q 014934 168 FYLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRT 245 (415)
Q Consensus 168 ~~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~ 245 (415)
..+++++++| +.++|+| .|++|+|||..++-+...+. .|+..|+.+.|+..|+.+++.+-||+|+.||+...+..++
T Consensus 351 ~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFt-eHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRT 429 (893)
T KOG0291|consen 351 DRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFT-EHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRT 429 (893)
T ss_pred cceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEec-cCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeee
Confidence 3589999999 7888888 57999999999999988887 8999999999999999999999999999999999999999
Q ss_pred ecCC-CccEEEEEee--CCEEEEEeCCC-cEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECC
Q 014934 246 MEGH-RLRVGALAWS--SSLLSSGSRDK-SILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQH 321 (415)
Q Consensus 246 l~~h-~~~V~~l~~~--~~~l~sgs~dg-~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~ 321 (415)
+... .....|++.+ +.+++.|+.|. .|.+|++.++. .+..+.||.++|.+++|+|++..||+|+.|++|++||+-
T Consensus 430 ft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGq-llDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if 508 (893)
T KOG0291|consen 430 FTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQ-LLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIF 508 (893)
T ss_pred ecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCe-eeehhcCCCCcceeeEEccccCeEEeccccceEEEEEee
Confidence 8753 3345677776 78888888887 59999999997 788999999999999999999999999999999999986
Q ss_pred CCc-eeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeC---------------------CCC
Q 014934 322 STQ-PVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDT---------------------GSQ 379 (415)
Q Consensus 322 ~~~-~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~---------------------~~~ 379 (415)
... .+.++ .+...|.+++|+|+|+.+.++. .||.|.|||...+..+..++. +..
T Consensus 509 ~s~~~vEtl-~i~sdvl~vsfrPdG~elaVaT---ldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~ 584 (893)
T KOG0291|consen 509 SSSGTVETL-EIRSDVLAVSFRPDGKELAVAT---LDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKT 584 (893)
T ss_pred ccCceeeeE-eeccceeEEEEcCCCCeEEEEE---ecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCc
Confidence 553 33344 6778899999999999666554 799999999998776655431 235
Q ss_pred EEEEEECCCCCeEEEEEecCCCcEEEEECCCC
Q 014934 380 VCNLVWSKNVNELVSTHGYSQNQIIVWRYPTM 411 (415)
Q Consensus 380 V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~ 411 (415)
.+.+++++||..+++ |+..+.|++|++++.
T Consensus 585 Ftti~ySaDG~~IlA--gG~sn~iCiY~v~~~ 614 (893)
T KOG0291|consen 585 FTTICYSADGKCILA--GGESNSICIYDVPEG 614 (893)
T ss_pred eEEEEEcCCCCEEEe--cCCcccEEEEECchh
Confidence 789999999999999 889999999999875
No 31
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=1.4e-27 Score=255.38 Aligned_cols=233 Identities=19% Similarity=0.354 Sum_probs=199.3
Q ss_pred cceeEeecCC--CcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcC-CCCeEEEEECCCcEEEEECCCCeee
Q 014934 168 FYLNLVDWSS--HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWAN-RNTHLAVGTSHGKVQIWDASRCKRV 243 (415)
Q Consensus 168 ~~i~~l~ws~--~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp-~g~~la~g~~dg~V~iwd~~~~~~~ 243 (415)
..+.+++|++ +.+|+++ .|+.|++||+.+++....+. +|.+.|++++|+| ++.+|++|+.||.|++||+.++..+
T Consensus 533 ~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~-~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~ 611 (793)
T PLN00181 533 SKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMK-EHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSI 611 (793)
T ss_pred CceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEec-CCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEE
Confidence 3577899987 4566666 68999999999988776665 8899999999997 7899999999999999999999888
Q ss_pred EEecCCCccEEEEEee---CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEEC
Q 014934 244 RTMEGHRLRVGALAWS---SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQ 320 (415)
Q Consensus 244 ~~l~~h~~~V~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~ 320 (415)
..+..+ ..|.++.|. +.+|++|+.||.|++||++........+.+|...|.++.|. ++.+|++++.|+.|+|||+
T Consensus 612 ~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~ 689 (793)
T PLN00181 612 GTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDL 689 (793)
T ss_pred EEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeC
Confidence 888754 679999995 57999999999999999998764567788999999999997 7889999999999999999
Q ss_pred CC------CceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee--------------CCCCE
Q 014934 321 HS------TQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD--------------TGSQV 380 (415)
Q Consensus 321 ~~------~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~--------------~~~~V 380 (415)
.. ..++..+.+|...+..++|+|++. +|++|+ .|+.|++|+......+..+. +...|
T Consensus 690 ~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~-~lasgs--~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V 766 (793)
T PLN00181 690 SMSISGINETPLHSFMGHTNVKNFVGLSVSDG-YIATGS--ETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFI 766 (793)
T ss_pred CCCccccCCcceEEEcCCCCCeeEEEEcCCCC-EEEEEe--CCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEE
Confidence 74 357888999999999999999986 788877 89999999987665432221 23458
Q ss_pred EEEEECCCCCeEEEEEecCCCcEEEEEC
Q 014934 381 CNLVWSKNVNELVSTHGYSQNQIIVWRY 408 (415)
Q Consensus 381 ~~l~~s~~~~~l~s~~g~~dg~I~vw~~ 408 (415)
.+++|++++..|++ |+.+|.|+||++
T Consensus 767 ~~v~ws~~~~~lva--~~~dG~I~i~~~ 792 (793)
T PLN00181 767 SSVCWRGQSSTLVA--ANSTGNIKILEM 792 (793)
T ss_pred EEEEEcCCCCeEEE--ecCCCcEEEEec
Confidence 99999999999999 788999999986
No 32
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.9e-28 Score=211.02 Aligned_cols=236 Identities=20% Similarity=0.334 Sum_probs=205.4
Q ss_pred ceeEeecCC--CcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEe
Q 014934 169 YLNLVDWSS--HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTM 246 (415)
Q Consensus 169 ~i~~l~ws~--~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l 246 (415)
.|+.+.|+- +..|++|.|.+|++||...+.+++.+. +|..+|..++.+.|...+++|+.|..|.+||+.+++.++.+
T Consensus 19 aV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYs-ghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~ 97 (307)
T KOG0316|consen 19 AVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYS-GHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRF 97 (307)
T ss_pred ceEEEEEccCCCEEEEcCCCceEEeecccccceeeeec-CCCceeeeccccccccccccCCCCceEEEEEcccCeeeeec
Confidence 488889987 456777899999999999999999997 89999999999999999999999999999999999999999
Q ss_pred cCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCC-ccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Q 014934 247 EGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQE-DFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHST 323 (415)
Q Consensus 247 ~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~-~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~ 323 (415)
.+|.+.|+.+.|+ ...+++|+.|.++++||.|+.. ++++.+......|.++..+ +..+++|+.||+++.||++.|
T Consensus 98 rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G 175 (307)
T KOG0316|consen 98 RGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKG 175 (307)
T ss_pred ccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeecc
Confidence 9999999999999 4799999999999999999764 4677777788889999886 668999999999999999999
Q ss_pred ceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee-CCCC--EEEEEECCCCCeEEEEEecCC
Q 014934 324 QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQ--VCNLVWSKNVNELVSTHGYSQ 400 (415)
Q Consensus 324 ~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~-~~~~--V~~l~~s~~~~~l~s~~g~~d 400 (415)
+...-+- ..+|+++.|+++++..|+++ .|++|++.|-.+|+.+..+. |.+. -...+++.....+++ |++|
T Consensus 176 ~l~sDy~--g~pit~vs~s~d~nc~La~~---l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~s--gSED 248 (307)
T KOG0316|consen 176 TLSSDYF--GHPITSVSFSKDGNCSLASS---LDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFS--GSED 248 (307)
T ss_pred eeehhhc--CCcceeEEecCCCCEEEEee---ccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEe--ccCC
Confidence 8766554 45799999999999777755 79999999999999998876 3333 344667777777777 8999
Q ss_pred CcEEEEECCCCccc
Q 014934 401 NQIIVWRYPTMSKV 414 (415)
Q Consensus 401 g~I~vw~~~s~~~l 414 (415)
|.+.+||+....++
T Consensus 249 G~Vy~wdLvd~~~~ 262 (307)
T KOG0316|consen 249 GKVYFWDLVDETQI 262 (307)
T ss_pred ceEEEEEeccceee
Confidence 99999999776543
No 33
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=1.4e-28 Score=240.75 Aligned_cols=251 Identities=22% Similarity=0.300 Sum_probs=213.8
Q ss_pred CCCCCCCCCCceeccCCCCCCCcceeEeecCC-CcEEEEEc-CCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeE
Q 014934 146 KAPRKVPRSPYKILDAPALQDDFYLNLVDWSS-HNVLAVGL-GNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHL 223 (415)
Q Consensus 146 k~~r~i~~~p~~~ld~~~l~~~~~i~~l~ws~-~~~la~~~-d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~l 223 (415)
+..++|......++|... |.| .+.||++. .+.+++|+..+..+. ++. +|++.|.++....+|.+|
T Consensus 314 ~i~k~ivG~ndEI~Dm~~-----------lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~-GH~e~vlSL~~~~~g~ll 380 (775)
T KOG0319|consen 314 TIVKQIVGYNDEILDMKF-----------LGPEESHLAVATNSPELRLYTLPTSYCQ-IIP-GHTEAVLSLDVWSSGDLL 380 (775)
T ss_pred EEehhhcCCchhheeeee-----------cCCccceEEEEeCCCceEEEecCCCceE-EEe-CchhheeeeeecccCcEE
Confidence 334556666666666543 455 57788885 579999999888876 443 999999999977788999
Q ss_pred EEEECCCcEEEEECCCC----eeeEEecCCCccEEEEEee---CCEEEEEeCCCcEEEEECCCCC--c--cEE----Eec
Q 014934 224 AVGTSHGKVQIWDASRC----KRVRTMEGHRLRVGALAWS---SSLLSSGSRDKSILQRDIRAQE--D--FVS----KLS 288 (415)
Q Consensus 224 a~g~~dg~V~iwd~~~~----~~~~~l~~h~~~V~~l~~~---~~~l~sgs~dg~I~iwd~~~~~--~--~~~----~~~ 288 (415)
++|+.|.+|++|.++.+ .++....+|...|++++++ ..+|+++|.|++|++|++...+ . ... ...
T Consensus 381 at~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~ 460 (775)
T KOG0319|consen 381 ATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTER 460 (775)
T ss_pred EEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHH
Confidence 99999999999987433 3455667999999999998 4799999999999999998722 1 111 335
Q ss_pred cccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCC
Q 014934 289 GHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTN 368 (415)
Q Consensus 289 ~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~ 368 (415)
.|...|++++++|+..++|||+.|.+.+||++.....+..+.+|+..|.++.|+|..+ ++++++ .|++|+||.+.+.
T Consensus 461 aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq-~laT~S--gD~TvKIW~is~f 537 (775)
T KOG0319|consen 461 AHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQ-LLATCS--GDKTVKIWSISTF 537 (775)
T ss_pred hhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccc-eeEecc--CCceEEEEEeccc
Confidence 7999999999999999999999999999999999999999999999999999999976 888888 6999999999999
Q ss_pred cEEEEee-CCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCCccc
Q 014934 369 THLSCMD-TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKV 414 (415)
Q Consensus 369 ~~~~~~~-~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~~l 414 (415)
.+++++. |.+.|..+.|-.+|..|++ ++.||-|++|++.+.+.+
T Consensus 538 SClkT~eGH~~aVlra~F~~~~~qliS--~~adGliKlWnikt~eC~ 582 (775)
T KOG0319|consen 538 SCLKTFEGHTSAVLRASFIRNGKQLIS--AGADGLIKLWNIKTNECE 582 (775)
T ss_pred eeeeeecCccceeEeeeeeeCCcEEEe--ccCCCcEEEEeccchhhh
Confidence 9999998 7889999999999999999 779999999999987654
No 34
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.96 E-value=9.2e-28 Score=208.30 Aligned_cols=221 Identities=18% Similarity=0.308 Sum_probs=188.5
Q ss_pred EEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCe--eeEEecCCCccEEEEEee
Q 014934 182 AVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCK--RVRTMEGHRLRVGALAWS 259 (415)
Q Consensus 182 a~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~--~~~~l~~h~~~V~~l~~~ 259 (415)
.+|.|.+|++|.+.+|.+.+.+. ...+.|..+++.|+++.||+++.. .|++||+.+++ ++.++.+|...|+++.|.
T Consensus 15 sA~YDhTIRfWqa~tG~C~rTiq-h~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~ 92 (311)
T KOG0315|consen 15 SAGYDHTIRFWQALTGICSRTIQ-HPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNPNPVATFEGHTKNVTAVGFQ 92 (311)
T ss_pred eccCcceeeeeehhcCeEEEEEe-cCccceeeEEEcCCcchhhhccCC-eeEEEEccCCCCCceeEEeccCCceEEEEEe
Confidence 33468999999999999999886 446789999999999999998765 69999998765 688999999999999998
Q ss_pred --CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEec-cCCCcE
Q 014934 260 --SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYC-EHTAAV 336 (415)
Q Consensus 260 --~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~-~h~~~V 336 (415)
++.+++|+.||+++|||+|... ......|..+|+++..+|+...|++|.++|.|+|||+.+..+...+. +....|
T Consensus 93 ~dgrWMyTgseDgt~kIWdlR~~~--~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i 170 (311)
T KOG0315|consen 93 CDGRWMYTGSEDGTVKIWDLRSLS--CQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSI 170 (311)
T ss_pred ecCeEEEecCCCceEEEEeccCcc--cchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcce
Confidence 8999999999999999999965 34445678999999999999999999999999999999876655553 345689
Q ss_pred EEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEE------EEee-CCCCEEEEEECCCCCeEEEEEecCCCcEEEEECC
Q 014934 337 KAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHL------SCMD-TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYP 409 (415)
Q Consensus 337 ~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~------~~~~-~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~ 409 (415)
.++...|+|..+.+.. ..|..++|++.+++.. ..+. |...+..+.+||++++|++ .++|.+++||+.+
T Consensus 171 ~sl~v~~dgsml~a~n---nkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat--~ssdktv~iwn~~ 245 (311)
T KOG0315|consen 171 QSLTVMPDGSMLAAAN---NKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLAT--CSSDKTVKIWNTD 245 (311)
T ss_pred eeEEEcCCCcEEEEec---CCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEe--ecCCceEEEEecC
Confidence 9999999998555543 6899999999875432 2333 6678999999999999999 5689999999999
Q ss_pred CC
Q 014934 410 TM 411 (415)
Q Consensus 410 s~ 411 (415)
.+
T Consensus 246 ~~ 247 (311)
T KOG0315|consen 246 DF 247 (311)
T ss_pred Cc
Confidence 87
No 35
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2e-28 Score=222.57 Aligned_cols=232 Identities=19% Similarity=0.355 Sum_probs=206.6
Q ss_pred eeEeecCC-CcEEEEEc-CCeEEEEECCCC-CeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEe
Q 014934 170 LNLVDWSS-HNVLAVGL-GNCVYLWNACSS-KVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTM 246 (415)
Q Consensus 170 i~~l~ws~-~~~la~~~-d~~V~iwd~~~~-~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l 246 (415)
+..+.++. +.+|+.++ |-.+.+||..+. ++.+.. .+|.-.|.+++|-|.|.++++++.|.+|+.|++.++-++.++
T Consensus 153 v~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~-~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~ 231 (406)
T KOG0295|consen 153 VFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSL-IGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTF 231 (406)
T ss_pred eeEEEEecCccEEEecCCccchhheeHHHHHHHHHHh-cCcccceeeEEEEecCCeeeecccccceeEEecccceeEEec
Confidence 77888888 78888875 445999998773 333333 388899999999999999999999999999999999999999
Q ss_pred cCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCC---------------CCEEEEE
Q 014934 247 EGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYD---------------NRELASG 309 (415)
Q Consensus 247 ~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd---------------g~~lasg 309 (415)
.+|..-|..+..+ +.++++++.|.++++|-+.++. +...+..|+.+|.+++|-|. +++++++
T Consensus 232 ~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~-~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~ 310 (406)
T KOG0295|consen 232 PGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQ-CKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSG 310 (406)
T ss_pred cCchHhEEEEEecCCeeEEEecCCCceEEEEEeccch-hhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEee
Confidence 9999999999988 6799999999999999999886 56778899999999999763 3589999
Q ss_pred eCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee-CCCCEEEEEECCC
Q 014934 310 GNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKN 388 (415)
Q Consensus 310 ~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~-~~~~V~~l~~s~~ 388 (415)
+.|++|++||+.++.++.++.+|...|..++|+|.|++|+.++ .|+++++||++++++...+. +...|+++.|..+
T Consensus 311 SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~Sca---DDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~ 387 (406)
T KOG0295|consen 311 SRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCA---DDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKT 387 (406)
T ss_pred cccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEe---cCCcEEEEEeccceeeeccCCCcceeEEEecCCC
Confidence 9999999999999999999999999999999999999666555 79999999999999998887 6678999999999
Q ss_pred CCeEEEEEecCCCcEEEEEC
Q 014934 389 VNELVSTHGYSQNQIIVWRY 408 (415)
Q Consensus 389 ~~~l~s~~g~~dg~I~vw~~ 408 (415)
..++++ |+-|-.+++|..
T Consensus 388 ~p~VvT--GsVdqt~KvwEc 405 (406)
T KOG0295|consen 388 APYVVT--GSVDQTVKVWEC 405 (406)
T ss_pred CceEEe--ccccceeeeeec
Confidence 998888 889999999974
No 36
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=3.9e-27 Score=206.76 Aligned_cols=231 Identities=24% Similarity=0.444 Sum_probs=193.1
Q ss_pred cceeEeecCC-CcEEEEE-cCCeEEEEECCCCCeEEeEec-CCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCC---Ce
Q 014934 168 FYLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDL-GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASR---CK 241 (415)
Q Consensus 168 ~~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~~-~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~---~~ 241 (415)
-.|..++|+| +++||++ .|.++.||.-..++...+-.+ +|...|.|++|+++|.+||+++.|..|-||.+.. .+
T Consensus 62 rsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfe 141 (312)
T KOG0645|consen 62 RSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFE 141 (312)
T ss_pred heeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEE
Confidence 4689999999 8899998 589999999877765444333 9999999999999999999999999999999974 35
Q ss_pred eeEEecCCCccEEEEEeeC--CEEEEEeCCCcEEEEECCCCC--ccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEE
Q 014934 242 RVRTMEGHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQE--DFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFV 317 (415)
Q Consensus 242 ~~~~l~~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~--~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~i 317 (415)
++..++.|...|..+.|+| .+|++++.|.+|++|+-.... .++.++.+|...|.+++|++.|..|+++++|++|+|
T Consensus 142 c~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~I 221 (312)
T KOG0645|consen 142 CIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSI 221 (312)
T ss_pred EEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEe
Confidence 7888999999999999998 899999999999999876322 467889999999999999999999999999999999
Q ss_pred EECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCc------EEEEe--eCCCCEEEEEECCC-
Q 014934 318 WNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNT------HLSCM--DTGSQVCNLVWSKN- 388 (415)
Q Consensus 318 wd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~------~~~~~--~~~~~V~~l~~s~~- 388 (415)
|-..+.-+ ..|..++..++|. + .++++++ .|+.|++|.-..+- .+... .|+..|++++|.|.
T Consensus 222 w~~~~~~~----~~~sr~~Y~v~W~-~--~~IaS~g--gD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~ 292 (312)
T KOG0645|consen 222 WRLYTDLS----GMHSRALYDVPWD-N--GVIASGG--GDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKV 292 (312)
T ss_pred eeeccCcc----hhcccceEeeeec-c--cceEecc--CCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCC
Confidence 99763321 1478899999999 3 4899988 69999999776431 11111 26678999999995
Q ss_pred CCeEEEEEecCCCcEEEEECC
Q 014934 389 VNELVSTHGYSQNQIIVWRYP 409 (415)
Q Consensus 389 ~~~l~s~~g~~dg~I~vw~~~ 409 (415)
.+.|++ |++||.|++|.+.
T Consensus 293 ~~~L~s--~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 293 SNRLAS--GGDDGIVNFWELE 311 (312)
T ss_pred CCceee--cCCCceEEEEEec
Confidence 566776 7899999999875
No 37
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=2e-28 Score=239.82 Aligned_cols=236 Identities=26% Similarity=0.429 Sum_probs=201.8
Q ss_pred ceeEee-cCCCcEEEEEc-CCeEEEEECCCCCeEEeEe---cCCCCCeEEEEEcCCC-CeEEEEECCCcEEEEECCCCee
Q 014934 169 YLNLVD-WSSHNVLAVGL-GNCVYLWNACSSKVTKLCD---LGIDDSVCSVGWANRN-THLAVGTSHGKVQIWDASRCKR 242 (415)
Q Consensus 169 ~i~~l~-ws~~~~la~~~-d~~V~iwd~~~~~~~~~~~---~~~~~~V~~v~~sp~g-~~la~g~~dg~V~iwd~~~~~~ 242 (415)
.|.+++ |+.+.+|++++ |++|++|.++.+.....+. .+|+..|.+|+++..+ .+|++++.|+++++|++...+.
T Consensus 367 ~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~ 446 (775)
T KOG0319|consen 367 AVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKE 446 (775)
T ss_pred heeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCccc
Confidence 466677 88887888885 8999999884443222211 2899999999998755 6999999999999999975221
Q ss_pred -----eE----EecCCCccEEEEEeeC--CEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeC
Q 014934 243 -----VR----TMEGHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGN 311 (415)
Q Consensus 243 -----~~----~l~~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~ 311 (415)
+. +...|...|+|++.++ .++++||.|++.++|++.... ....+.+|...|.++.|+|..+.+||++.
T Consensus 447 ~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~-l~~vLsGH~RGvw~V~Fs~~dq~laT~Sg 525 (775)
T KOG0319|consen 447 TAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLR-LLGVLSGHTRGVWCVSFSKNDQLLATCSG 525 (775)
T ss_pred ccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCce-EEEEeeCCccceEEEEeccccceeEeccC
Confidence 11 2346999999999984 699999999999999999655 78899999999999999999999999999
Q ss_pred CCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee-CCCCEEEEEECCCCC
Q 014934 312 DNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKNVN 390 (415)
Q Consensus 312 dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~-~~~~V~~l~~s~~~~ 390 (415)
|++|+||.+.+..++.+|++|..+|..+.|-.+|..|+. ++ .||.|++||+.+++|+.+++ |...|++++-++...
T Consensus 526 D~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS-~~--adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~ 602 (775)
T KOG0319|consen 526 DKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLIS-AG--ADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLD 602 (775)
T ss_pred CceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEe-cc--CCCcEEEEeccchhhhhhhhhccceeEEEeecCccc
Confidence 999999999999999999999999999999999985554 44 69999999999999999998 788999999999999
Q ss_pred eEEEEEecCCCcEEEEECCC
Q 014934 391 ELVSTHGYSQNQIIVWRYPT 410 (415)
Q Consensus 391 ~l~s~~g~~dg~I~vw~~~s 410 (415)
.+++ |+.||.|.+|.=.+
T Consensus 603 ~~~t--gg~Dg~i~~wkD~T 620 (775)
T KOG0319|consen 603 MFVT--GGGDGRIIFWKDVT 620 (775)
T ss_pred eeEe--cCCCeEEEEeecCc
Confidence 8888 88999999998554
No 38
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.96 E-value=8.7e-27 Score=212.01 Aligned_cols=233 Identities=24% Similarity=0.406 Sum_probs=201.5
Q ss_pred ceeEeecCC-CcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEe
Q 014934 169 YLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTM 246 (415)
Q Consensus 169 ~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l 246 (415)
.+.+++.+| .+++|+| .|..-++|+..+++....+. +|.+.|+++.|+.+|.+||+|..+|.|+||+..++.....+
T Consensus 66 svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~elt-gHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~ 144 (399)
T KOG0296|consen 66 SVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELT-GHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKL 144 (399)
T ss_pred ceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEec-CCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEe
Confidence 366788888 6777777 46789999999999766665 99999999999999999999999999999999999888777
Q ss_pred cCCCccEEEEEeeC--CEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCc
Q 014934 247 EGHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQ 324 (415)
Q Consensus 247 ~~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~ 324 (415)
..-...+.-|.|+| .+|+.|+.||.+.+|.+.+.. ..+.+.+|..++++=.|.|+|+.+++|..||+|++||.++++
T Consensus 145 ~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~-~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~ 223 (399)
T KOG0296|consen 145 DQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQA-LCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQ 223 (399)
T ss_pred ecccCceEEEEecccccEEEeecCCCcEEEEECCCcc-eeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCc
Confidence 65566777888884 799999999999999999875 578899999999999999999999999999999999998765
Q ss_pred eeEEe---------------------------------------------------------------------------
Q 014934 325 PVLKY--------------------------------------------------------------------------- 329 (415)
Q Consensus 325 ~~~~~--------------------------------------------------------------------------- 329 (415)
+++++
T Consensus 224 p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~ 303 (399)
T KOG0296|consen 224 PLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAAC 303 (399)
T ss_pred eeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhc
Confidence 44433
Q ss_pred --------------------ccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee-CCCCEEEEEECCC
Q 014934 330 --------------------CEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKN 388 (415)
Q Consensus 330 --------------------~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~-~~~~V~~l~~s~~ 388 (415)
-.|..+|..+.|-+ ..+|++++ .+|.|+.||.++|+++..+. |...|..++++|+
T Consensus 304 G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c---~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~ 379 (399)
T KOG0296|consen 304 GSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTAC---ANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQ 379 (399)
T ss_pred ccccceEEEEecccchhheeccCCCceEEEEEcC-cchheeec---cCceEEeeeccccceEEEEecCchheeEEEEcCC
Confidence 13666788888988 56677665 69999999999999998886 6678999999999
Q ss_pred CCeEEEEEecCCCcEEEEECC
Q 014934 389 VNELVSTHGYSQNQIIVWRYP 409 (415)
Q Consensus 389 ~~~l~s~~g~~dg~I~vw~~~ 409 (415)
.+.+++ ++.|++.+||+++
T Consensus 380 ~~~vvT--~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 380 KRLVVT--VSDDNTALVFEVP 398 (399)
T ss_pred CcEEEE--ecCCCeEEEEecC
Confidence 999999 6789999999986
No 39
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.96 E-value=1.3e-26 Score=248.02 Aligned_cols=238 Identities=18% Similarity=0.360 Sum_probs=195.0
Q ss_pred CCcceeEeecCC-CcEEEEE-cCCeEEEEECCCC----Ce--EEeEecCCCCCeEEEEEcC-CCCeEEEEECCCcEEEEE
Q 014934 166 DDFYLNLVDWSS-HNVLAVG-LGNCVYLWNACSS----KV--TKLCDLGIDDSVCSVGWAN-RNTHLAVGTSHGKVQIWD 236 (415)
Q Consensus 166 ~~~~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~----~~--~~~~~~~~~~~V~~v~~sp-~g~~la~g~~dg~V~iwd 236 (415)
....|.+++|++ +++||+| .|+.|+||+..+. .. .....+.+...|.+++|++ ++.+||+|+.||.|+|||
T Consensus 482 ~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd 561 (793)
T PLN00181 482 SSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWD 561 (793)
T ss_pred CCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEEE
Confidence 355699999999 7777666 5899999997542 11 1112223457899999987 578999999999999999
Q ss_pred CCCCeeeEEecCCCccEEEEEee---CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEe-CCCCEEEEEeCC
Q 014934 237 ASRCKRVRTMEGHRLRVGALAWS---SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWS-YDNRELASGGND 312 (415)
Q Consensus 237 ~~~~~~~~~l~~h~~~V~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s-pdg~~lasg~~d 312 (415)
+.+++.+..+.+|...|.+++|+ +.+|++|+.||+|++||++.+. .+..+..+ ..|+++.|+ ++|.+||+|+.|
T Consensus 562 ~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~-~~~~~~~~-~~v~~v~~~~~~g~~latgs~d 639 (793)
T PLN00181 562 VARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGV-SIGTIKTK-ANICCVQFPSESGRSLAFGSAD 639 (793)
T ss_pred CCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCc-EEEEEecC-CCeEEEEEeCCCCCEEEEEeCC
Confidence 99999999999999999999997 3689999999999999999876 45566544 679999995 579999999999
Q ss_pred CcEEEEECCCCc-eeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCC------cEEEEee-CCCCEEEEE
Q 014934 313 NRLFVWNQHSTQ-PVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTN------THLSCMD-TGSQVCNLV 384 (415)
Q Consensus 313 g~I~iwd~~~~~-~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~------~~~~~~~-~~~~V~~l~ 384 (415)
|.|++||+++.+ ++..+.+|...|.++.|. ++. .+++++ .|+.|++||+..+ ..+..+. +...+..+.
T Consensus 640 g~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~-~lvs~s--~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~ 715 (793)
T PLN00181 640 HKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSS-TLVSSS--TDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVG 715 (793)
T ss_pred CeEEEEECCCCCccceEecCCCCCEEEEEEe-CCC-EEEEEE--CCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEE
Confidence 999999998765 577788999999999997 444 666666 7999999999753 4555654 566788999
Q ss_pred ECCCCCeEEEEEecCCCcEEEEECCCC
Q 014934 385 WSKNVNELVSTHGYSQNQIIVWRYPTM 411 (415)
Q Consensus 385 ~s~~~~~l~s~~g~~dg~I~vw~~~s~ 411 (415)
|++++.+|++ |+.|+.|++|+....
T Consensus 716 ~s~~~~~las--gs~D~~v~iw~~~~~ 740 (793)
T PLN00181 716 LSVSDGYIAT--GSETNEVFVYHKAFP 740 (793)
T ss_pred EcCCCCEEEE--EeCCCEEEEEECCCC
Confidence 9999999998 889999999997543
No 40
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.1e-27 Score=208.51 Aligned_cols=238 Identities=20% Similarity=0.367 Sum_probs=198.8
Q ss_pred eEeecCC--CcEEEEE--------cCCeEEEEECC-CCCeEEeEecCCCCCeEEEEEcCC-CCeEEEEECCCcEEEEECC
Q 014934 171 NLVDWSS--HNVLAVG--------LGNCVYLWNAC-SSKVTKLCDLGIDDSVCSVGWANR-NTHLAVGTSHGKVQIWDAS 238 (415)
Q Consensus 171 ~~l~ws~--~~~la~~--------~d~~V~iwd~~-~~~~~~~~~~~~~~~V~~v~~sp~-g~~la~g~~dg~V~iwd~~ 238 (415)
..+.||| .+.||++ ..|.++|.+.. .+.+.....+.-.+.+..|+|++. .+.+++++.||+++|||+.
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~ 91 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT 91 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence 4778998 5555543 24789999996 445555555566889999999985 4688889999999999964
Q ss_pred C-CeeeEEecCCCccEEEEEee---CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeC-CCCEEEEEeCCC
Q 014934 239 R-CKRVRTMEGHRLRVGALAWS---SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSY-DNRELASGGNDN 313 (415)
Q Consensus 239 ~-~~~~~~l~~h~~~V~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~lasg~~dg 313 (415)
. .+++..++.|...|.++.|+ ...+++++.|++|++||...+. .+.++.+|..-|...+|+| .+++|++++.|+
T Consensus 92 ~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~-Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~ 170 (311)
T KOG0277|consen 92 MPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN-SVQTFNGHNSCIYQAAFSPHIPNLFASASGDG 170 (311)
T ss_pred CCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc-ceEeecCCccEEEEEecCCCCCCeEEEccCCc
Confidence 3 46888999999999999999 4678888999999999998877 5888999999999999999 788999999999
Q ss_pred cEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCc-EEEEee-CCCCEEEEEECCCCCe
Q 014934 314 RLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNT-HLSCMD-TGSQVCNLVWSKNVNE 391 (415)
Q Consensus 314 ~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~-~~~~~~-~~~~V~~l~~s~~~~~ 391 (415)
.+++||++..-....+..|...+.++.|+...++++++|+ .|+.|+.||++.-+ ++.++. |+-.|..+.|||...-
T Consensus 171 ~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~--vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~ 248 (311)
T KOG0277|consen 171 TLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGG--VDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHAS 248 (311)
T ss_pred eEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecC--CCceEEEEehhhccccceeecCCceEEEEEecCcchhh
Confidence 9999999875444558899999999999999999999998 99999999998743 455554 6677999999998776
Q ss_pred EEEEEecCCCcEEEEECCCCc
Q 014934 392 LVSTHGYSQNQIIVWRYPTMS 412 (415)
Q Consensus 392 l~s~~g~~dg~I~vw~~~s~~ 412 (415)
|+++ .+-|-+++|||+....
T Consensus 249 lLaS-asYDmT~riw~~~~~d 268 (311)
T KOG0277|consen 249 LLAS-ASYDMTVRIWDPERQD 268 (311)
T ss_pred Hhhh-ccccceEEecccccch
Confidence 6655 4578999999997543
No 41
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.96 E-value=1e-26 Score=220.19 Aligned_cols=241 Identities=22% Similarity=0.358 Sum_probs=194.6
Q ss_pred CcceeEeecCC-C-cEEEEEcCCeEEEEECCCCCeEEeEec--CCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCee
Q 014934 167 DFYLNLVDWSS-H-NVLAVGLGNCVYLWNACSSKVTKLCDL--GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKR 242 (415)
Q Consensus 167 ~~~i~~l~ws~-~-~~la~~~d~~V~iwd~~~~~~~~~~~~--~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~ 242 (415)
.-+|+|+.|+| + .++.+|.|++|++||-.+++.+..+.- .|.+.|.+++|+||++.+++++.|.+++|||+.+.++
T Consensus 190 skFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~sl 269 (603)
T KOG0318|consen 190 SKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSL 269 (603)
T ss_pred ccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccce
Confidence 34799999999 4 455666899999999999998877752 6899999999999999999999999999999876544
Q ss_pred eEE-------------------------------------------ecCCCccEEEEEee--CCEEEEEeCCCcEEEEEC
Q 014934 243 VRT-------------------------------------------MEGHRLRVGALAWS--SSLLSSGSRDKSILQRDI 277 (415)
Q Consensus 243 ~~~-------------------------------------------l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~ 277 (415)
+++ +.+|...|+++..+ +.+|++|+.||.|.-||.
T Consensus 270 v~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~ 349 (603)
T KOG0318|consen 270 VSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDS 349 (603)
T ss_pred EEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEec
Confidence 333 23788999999998 579999999999999998
Q ss_pred CCCCcc----------E--------------------EE-----------------------------------------
Q 014934 278 RAQEDF----------V--------------------SK----------------------------------------- 286 (415)
Q Consensus 278 ~~~~~~----------~--------------------~~----------------------------------------- 286 (415)
..+... + ..
T Consensus 350 ~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv 429 (603)
T KOG0318|consen 350 GSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIV 429 (603)
T ss_pred CCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEE
Confidence 654310 0 00
Q ss_pred -eccc--------cCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCc--eeEEeccCCCcEEEEEEcCCCCcEEEEEcCC
Q 014934 287 -LSGH--------KSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQ--PVLKYCEHTAAVKAIAWSPHLHGLLASGGGT 355 (415)
Q Consensus 287 -~~~h--------~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~--~~~~~~~h~~~V~~l~~sp~~~~llasggg~ 355 (415)
+..+ .-...+++++|++..+|+|+.|+.|+||.+.... .......|.++|++++++|++. +||++.
T Consensus 430 ~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~-yla~~D-- 506 (603)
T KOG0318|consen 430 LLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGA-YLAAGD-- 506 (603)
T ss_pred EEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCc-EEEEec--
Confidence 0001 1124578899999999999999999999998754 3345568999999999999998 666665
Q ss_pred CCCeEEEEECCCCcEEE-Eee-CCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCCc
Q 014934 356 ADRCIRFWNTTTNTHLS-CMD-TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMS 412 (415)
Q Consensus 356 ~d~~I~iwd~~t~~~~~-~~~-~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~ 412 (415)
..+.+.+||+.+.+... ... |.+.|.+++|+|+...+++ |+-|..|.||++....
T Consensus 507 a~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vAT--GSlDt~Viiysv~kP~ 563 (603)
T KOG0318|consen 507 ASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVAT--GSLDTNVIIYSVKKPA 563 (603)
T ss_pred cCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEe--ccccceEEEEEccChh
Confidence 79999999999987622 122 7789999999999999988 8999999999997643
No 42
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.2e-27 Score=230.36 Aligned_cols=229 Identities=20% Similarity=0.316 Sum_probs=204.0
Q ss_pred eeEeecCC-CcEEEEEc-CCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCC-CeeeEEe
Q 014934 170 LNLVDWSS-HNVLAVGL-GNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASR-CKRVRTM 246 (415)
Q Consensus 170 i~~l~ws~-~~~la~~~-d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~-~~~~~~l 246 (415)
|....|-. .+++++|+ |..|++|+..+++.+..++ .|.+.|.|++.+|.-.++++++.|-+|++||.+. ..+.+++
T Consensus 58 vRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~Fe-AH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtf 136 (794)
T KOG0276|consen 58 VRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFE-AHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTF 136 (794)
T ss_pred hhhheeeeccceEEEecCCceEEEEecccceeeEEee-ccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEE
Confidence 33444444 67788886 5799999999999998887 8999999999999999999999999999999875 4788999
Q ss_pred cCCCccEEEEEeeC---CEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeC--CCCEEEEEeCCCcEEEEECC
Q 014934 247 EGHRLRVGALAWSS---SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSY--DNRELASGGNDNRLFVWNQH 321 (415)
Q Consensus 247 ~~h~~~V~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp--dg~~lasg~~dg~I~iwd~~ 321 (415)
++|...|.+++|+| +.+++++-|++|++|.+.+.. +..++.+|...|+|+.+-+ |..+|++|+.|..|+|||..
T Consensus 137 eGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~-~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQ 215 (794)
T KOG0276|consen 137 EGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPH-PNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQ 215 (794)
T ss_pred cCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCC-CceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecc
Confidence 99999999999994 799999999999999999887 6889999999999999987 45699999999999999999
Q ss_pred CCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee-CCCCEEEEEECCCCCeEEEEEecCC
Q 014934 322 STQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKNVNELVSTHGYSQ 400 (415)
Q Consensus 322 ~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~-~~~~V~~l~~s~~~~~l~s~~g~~d 400 (415)
+..+++++++|...|..+.|+|.-. ++++|+ +||++|||+..|-++..++. ....|++++-.+.++.++. |+++
T Consensus 216 tk~CV~TLeGHt~Nvs~v~fhp~lp-iiisgs--EDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~v--G~De 290 (794)
T KOG0276|consen 216 TKSCVQTLEGHTNNVSFVFFHPELP-IIISGS--EDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAV--GFDE 290 (794)
T ss_pred hHHHHHHhhcccccceEEEecCCCc-EEEEec--CCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEE--eccC
Confidence 9999999999999999999999977 888887 99999999999988877776 4578999999999888888 8877
Q ss_pred CcEEE
Q 014934 401 NQIIV 405 (415)
Q Consensus 401 g~I~v 405 (415)
|.|.|
T Consensus 291 g~i~v 295 (794)
T KOG0276|consen 291 GSVTV 295 (794)
T ss_pred CcEEE
Confidence 76543
No 43
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.7e-27 Score=230.05 Aligned_cols=237 Identities=25% Similarity=0.427 Sum_probs=209.1
Q ss_pred CcceeEeecCC-CcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeE
Q 014934 167 DFYLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVR 244 (415)
Q Consensus 167 ~~~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~ 244 (415)
..+++++.|++ +..||+| .+|.|.|||..+.+..+.+...|...|-+++|. +..+.+|+.+|.|..+|+...+...
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~ 294 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVV 294 (484)
T ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhh
Confidence 56899999999 8999999 579999999999888887775589999999998 7789999999999999998876554
Q ss_pred E-ecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeC-CCCEEEEEe--CCCcEEEE
Q 014934 245 T-MEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSY-DNRELASGG--NDNRLFVW 318 (415)
Q Consensus 245 ~-l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~lasg~--~dg~I~iw 318 (415)
. +.+|...|..+.|+ +.+|++|+.|+.+.|||..... +...+..|...|.+++|+| ...+||+|+ .|+.|++|
T Consensus 295 ~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~-p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fw 373 (484)
T KOG0305|consen 295 STLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPE-PKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFW 373 (484)
T ss_pred hhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCcc-ccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEE
Confidence 4 88999999999999 6899999999999999997665 6788889999999999999 677899865 69999999
Q ss_pred ECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee-CCCCEEEEEECCCCCeEEEEEe
Q 014934 319 NQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKNVNELVSTHG 397 (415)
Q Consensus 319 d~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~-~~~~V~~l~~s~~~~~l~s~~g 397 (415)
|..+++.+..+ .-...|..|.|++..+.++++. |..+..|.||+..+.+.+..+. |...|..++++|||..+++ |
T Consensus 374 n~~~g~~i~~v-dtgsQVcsL~Wsk~~kEi~sth-G~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t--~ 449 (484)
T KOG0305|consen 374 NTNTGARIDSV-DTGSQVCSLIWSKKYKELLSTH-GYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVT--G 449 (484)
T ss_pred EcCCCcEeccc-ccCCceeeEEEcCCCCEEEEec-CCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEE--e
Confidence 99999998887 4567899999999988676666 6678899999999988877775 7788999999999999999 7
Q ss_pred cCCCcEEEEECCC
Q 014934 398 YSQNQIIVWRYPT 410 (415)
Q Consensus 398 ~~dg~I~vw~~~s 410 (415)
..|.+|++|++-.
T Consensus 450 a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 450 AADETLRFWNLFD 462 (484)
T ss_pred cccCcEEeccccC
Confidence 7899999999754
No 44
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=2.8e-27 Score=237.47 Aligned_cols=238 Identities=20% Similarity=0.301 Sum_probs=209.8
Q ss_pred CcceeEeecCCCcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEe
Q 014934 167 DFYLNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTM 246 (415)
Q Consensus 167 ~~~i~~l~ws~~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l 246 (415)
+..+.+..|+.+.+++...+..|.+|+..++..+..--.+|.+.|.++++...+.+|++|+.|.++++||+.++++..++
T Consensus 208 ~~~~~~~q~~~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l 287 (537)
T KOG0274|consen 208 DHVVLCLQLHDGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSL 287 (537)
T ss_pred cchhhhheeecCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEe
Confidence 44577888886777777778999999999999888733499999999999988899999999999999999999999999
Q ss_pred cCCCccEEEEEeeCCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCcee
Q 014934 247 EGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPV 326 (415)
Q Consensus 247 ~~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~ 326 (415)
.+|...|.++...+..+++|+.|.+|++|++.++. .+..+.+|...|.++..+ +.++++|+.|+.|.|||+.+++++
T Consensus 288 ~gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~-~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl 364 (537)
T KOG0274|consen 288 QGHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGA-CLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCL 364 (537)
T ss_pred cCCCceEEEEEccCceEeeccCCceEEEEeccCcc-eEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceee
Confidence 99999999999999999999999999999999887 688888899999999997 889999999999999999999999
Q ss_pred EEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCC-cEEEEeeCCCCEEEEEECCCCCeEEEEEecCCCcEEE
Q 014934 327 LKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTN-THLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIV 405 (415)
Q Consensus 327 ~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~-~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~v 405 (415)
..+.+|..+|.++.+... ..+.+|+ .|+.|++||+.+. +++..+.++..+. -.....++.|++ +..|++|++
T Consensus 365 ~sl~gH~~~V~sl~~~~~--~~~~Sgs--~D~~IkvWdl~~~~~c~~tl~~h~~~v-~~l~~~~~~Lvs--~~aD~~Ik~ 437 (537)
T KOG0274|consen 365 KSLSGHTGRVYSLIVDSE--NRLLSGS--LDTTIKVWDLRTKRKCIHTLQGHTSLV-SSLLLRDNFLVS--SSADGTIKL 437 (537)
T ss_pred eeecCCcceEEEEEecCc--ceEEeee--eccceEeecCCchhhhhhhhcCCcccc-cccccccceeEe--ccccccEEE
Confidence 999999999999988875 4777777 9999999999999 8888887554433 333446778888 788999999
Q ss_pred EECCCCccc
Q 014934 406 WRYPTMSKV 414 (415)
Q Consensus 406 w~~~s~~~l 414 (415)
||..+++.+
T Consensus 438 WD~~~~~~~ 446 (537)
T KOG0274|consen 438 WDAEEGECL 446 (537)
T ss_pred eecccCcee
Confidence 999887653
No 45
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.96 E-value=3.5e-28 Score=228.14 Aligned_cols=232 Identities=19% Similarity=0.370 Sum_probs=197.6
Q ss_pred ceeEeecCC--CcEEEEE-cCCeEEEEECCC-CCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeE
Q 014934 169 YLNLVDWSS--HNVLAVG-LGNCVYLWNACS-SKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVR 244 (415)
Q Consensus 169 ~i~~l~ws~--~~~la~~-~d~~V~iwd~~~-~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~ 244 (415)
.|+++.|.| +.+|+.+ .|+.|+||++.+ +++++.+. +|..+|.+++|+++|..+++++.|+.|++||+++|+++.
T Consensus 216 gvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~-gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~ 294 (503)
T KOG0282|consen 216 GVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFK-GHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLS 294 (503)
T ss_pred ccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhh-cchhhhhhhhccccCCeeeeeecceeeeeeccccceEEE
Confidence 488999999 5555554 799999999887 77888776 999999999999999999999999999999999999999
Q ss_pred EecCCCccEEEEEeeC---CEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECC
Q 014934 245 TMEGHRLRVGALAWSS---SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQH 321 (415)
Q Consensus 245 ~l~~h~~~V~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~ 321 (415)
.+. -...++|+.|++ +.+++|+.|+.|+.||+|+++ .++.+..|-+.|..+.|-++|+++++.+.|+.++||+.+
T Consensus 295 ~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~k-vvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~ 372 (503)
T KOG0282|consen 295 RFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGK-VVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENR 372 (503)
T ss_pred EEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchH-HHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcC
Confidence 887 456789999983 799999999999999999998 788888999999999999999999999999999999976
Q ss_pred CCcee----------------------------------------------EEeccCCC--cEEEEEEcCCCCcEEEEEc
Q 014934 322 STQPV----------------------------------------------LKYCEHTA--AVKAIAWSPHLHGLLASGG 353 (415)
Q Consensus 322 ~~~~~----------------------------------------------~~~~~h~~--~V~~l~~sp~~~~llasgg 353 (415)
...++ ..|++|.. .-..+.|||||. +|++|.
T Consensus 373 ~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~-~l~SGd 451 (503)
T KOG0282|consen 373 IPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGR-TLCSGD 451 (503)
T ss_pred CCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCC-eEEeec
Confidence 42111 11245543 346689999998 778877
Q ss_pred CCCCCeEEEEECCCCcEEEEeeCC-CCEEEEEECCCCCeEEEEEecCCCcEEEEE
Q 014934 354 GTADRCIRFWNTTTNTHLSCMDTG-SQVCNLVWSKNVNELVSTHGYSQNQIIVWR 407 (415)
Q Consensus 354 g~~d~~I~iwd~~t~~~~~~~~~~-~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~ 407 (415)
.||.+.+||.++-+.+..+..+ ..+..+.|+|...--+++ ++-+|.|++|+
T Consensus 452 --sdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat-~~w~G~Ikiwd 503 (503)
T KOG0282|consen 452 --SDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVAT-CGWDGLIKIWD 503 (503)
T ss_pred --CCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEe-cccCceeEecC
Confidence 8999999999999999888855 778899999987655555 56899999996
No 46
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.96 E-value=2.1e-27 Score=215.32 Aligned_cols=232 Identities=20% Similarity=0.313 Sum_probs=209.5
Q ss_pred ceeEeecCC--CcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEe
Q 014934 169 YLNLVDWSS--HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTM 246 (415)
Q Consensus 169 ~i~~l~ws~--~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l 246 (415)
.+..+++|+ ..++.++.|+.|+.||+...++++.+. +|-..|.|++.+|.-+.|++|+.|.+++|||+++...+..+
T Consensus 195 ~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~Yh-GHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l 273 (460)
T KOG0285|consen 195 TVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYH-GHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVL 273 (460)
T ss_pred eeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhc-cccceeEEEeccccceeEEecCCcceEEEeeecccceEEEe
Confidence 467888998 456666688999999999999988886 99999999999999999999999999999999999999999
Q ss_pred cCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCc
Q 014934 247 EGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQ 324 (415)
Q Consensus 247 ~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~ 324 (415)
.+|..+|..+.+. ...+++|+.|++|++||++.+. ....+..|+..|.+++.+|....||+++.|+ |+-|++..+.
T Consensus 274 ~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agk-t~~tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~ 351 (460)
T KOG0285|consen 274 SGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGK-TMITLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGE 351 (460)
T ss_pred cCCCCcceeEEeecCCCceEEecCCceEEEeeeccCc-eeEeeecccceeeEEecCCchhhhhccCCcc-ceeccCCccc
Confidence 9999999999998 5789999999999999999998 5778889999999999999999999999987 8999999999
Q ss_pred eeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee---------CCCCEEEEEECCCCCeEEEE
Q 014934 325 PVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD---------TGSQVCNLVWSKNVNELVST 395 (415)
Q Consensus 325 ~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~---------~~~~V~~l~~s~~~~~l~s~ 395 (415)
.++.+.+|++.|.+++...++ ++++|+ ..|.|.+||.++|...+... ....|.+.+|...|..|++
T Consensus 352 f~~nlsgh~~iintl~~nsD~--v~~~G~--dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit- 426 (460)
T KOG0285|consen 352 FLQNLSGHNAIINTLSVNSDG--VLVSGG--DNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLIT- 426 (460)
T ss_pred hhhccccccceeeeeeeccCc--eEEEcC--CceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEe-
Confidence 999999999999999998875 788887 89999999999987766553 3456899999999999999
Q ss_pred EecCCCcEEEEECC
Q 014934 396 HGYSQNQIIVWRYP 409 (415)
Q Consensus 396 ~g~~dg~I~vw~~~ 409 (415)
|..|.+|++|+-.
T Consensus 427 -~eadKtIk~~keD 439 (460)
T KOG0285|consen 427 -GEADKTIKMYKED 439 (460)
T ss_pred -ccCCcceEEEecc
Confidence 7789999999853
No 47
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2e-27 Score=236.29 Aligned_cols=237 Identities=18% Similarity=0.314 Sum_probs=208.3
Q ss_pred eeEeecCC-CcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEec
Q 014934 170 LNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTME 247 (415)
Q Consensus 170 i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~ 247 (415)
+-.++|+| .-++.++ ..|.|.+||..-+.++..+. +|.++|..|+|+|++.++++|+.|-.|++|+..+.+++-++.
T Consensus 12 vKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFd-eHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~ 90 (1202)
T KOG0292|consen 12 VKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFD-EHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLL 90 (1202)
T ss_pred ccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhh-ccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhc
Confidence 55788999 5566666 57999999999998888886 899999999999999999999999999999999999999999
Q ss_pred CCCccEEEEEeeC--CEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCC---
Q 014934 248 GHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHS--- 322 (415)
Q Consensus 248 ~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~--- 322 (415)
+|-..|..+.|+. -.++++|.|.+|+||+..++. ++..+.||...|.|..|+|...++++++-|.+|+|||+..
T Consensus 91 GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~-~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRk 169 (1202)
T KOG0292|consen 91 GHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRK-CIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRK 169 (1202)
T ss_pred cccceeEEeeccCCCceEEEccCCCeEEEEeccCCc-eEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhc
Confidence 9999999999995 589999999999999999987 7999999999999999999999999999999999999742
Q ss_pred -----C---------------------ceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEE---E
Q 014934 323 -----T---------------------QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLS---C 373 (415)
Q Consensus 323 -----~---------------------~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~---~ 373 (415)
+ -..+.+++|...|+.++|+|.-. +++||+ .|+.|++|.+..-+... +
T Consensus 170 k~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlp-liVSG~--DDRqVKlWrmnetKaWEvDtc 246 (1202)
T KOG0292|consen 170 KNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLP-LIVSGA--DDRQVKLWRMNETKAWEVDTC 246 (1202)
T ss_pred cCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcc-eEEecC--CcceeeEEEeccccceeehhh
Confidence 0 01245679999999999999877 899987 99999999987654321 1
Q ss_pred eeCCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCCcc
Q 014934 374 MDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSK 413 (415)
Q Consensus 374 ~~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~~ 413 (415)
..|-+.|.++.|+|..+.+++ .++|+.|+|||+...+.
T Consensus 247 rgH~nnVssvlfhp~q~lIlS--nsEDksirVwDm~kRt~ 284 (1202)
T KOG0292|consen 247 RGHYNNVSSVLFHPHQDLILS--NSEDKSIRVWDMTKRTS 284 (1202)
T ss_pred hcccCCcceEEecCccceeEe--cCCCccEEEEecccccc
Confidence 236788999999999999998 67999999999986543
No 48
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.95 E-value=3.9e-28 Score=219.33 Aligned_cols=227 Identities=19% Similarity=0.381 Sum_probs=194.0
Q ss_pred ceeEeecCCCcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCe---eeE
Q 014934 169 YLNLVDWSSHNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCK---RVR 244 (415)
Q Consensus 169 ~i~~l~ws~~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~---~~~ 244 (415)
.|-|+++... +|+.| +|.+|++||.+++++...+. +|.+.|..+.|+ ..++++++.|.++.+||+.... +.+
T Consensus 239 SVLCLqyd~r-viisGSSDsTvrvWDv~tge~l~tli-hHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rr 314 (499)
T KOG0281|consen 239 SVLCLQYDER-VIVSGSSDSTVRVWDVNTGEPLNTLI-HHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRR 314 (499)
T ss_pred cEEeeeccce-EEEecCCCceEEEEeccCCchhhHHh-hhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHH
Confidence 4778888755 55555 78999999999999988874 899999999997 4589999999999999997654 335
Q ss_pred EecCCCccEEEEEeeCCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCc
Q 014934 245 TMEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQ 324 (415)
Q Consensus 245 ~l~~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~ 324 (415)
.+.||.+.|+.+.|+.+++++++.|++|++|++.+.+ ++.++.+|+..|.|+.+ .|+++++|+.|++|++||+..|.
T Consensus 315 VLvGHrAaVNvVdfd~kyIVsASgDRTikvW~~st~e-fvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~ 391 (499)
T KOG0281|consen 315 VLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCE-FVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGA 391 (499)
T ss_pred HHhhhhhheeeeccccceEEEecCCceEEEEecccee-eehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccH
Confidence 5679999999999999999999999999999999987 79999999999999987 48999999999999999999999
Q ss_pred eeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEE---------E-EeeCCCCEEEEEECCCCCeEEE
Q 014934 325 PVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHL---------S-CMDTGSQVCNLVWSKNVNELVS 394 (415)
Q Consensus 325 ~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~---------~-~~~~~~~V~~l~~s~~~~~l~s 394 (415)
++..+++|..-|.++.|... -+++|+ .||.|++||+.++... . ...+.+.|..++|. ...+++
T Consensus 392 cLRvLeGHEeLvRciRFd~k---rIVSGa--YDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvs 464 (499)
T KOG0281|consen 392 CLRVLEGHEELVRCIRFDNK---RIVSGA--YDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD--EFQIIS 464 (499)
T ss_pred HHHHHhchHHhhhheeecCc---eeeecc--ccceEEEEecccccCCcccccchHHHhhhhccceeEEEeec--ceEEEe
Confidence 99999999999999999853 677776 9999999999876432 1 22366789999995 455776
Q ss_pred EEecCCCcEEEEECCCC
Q 014934 395 THGYSQNQIIVWRYPTM 411 (415)
Q Consensus 395 ~~g~~dg~I~vw~~~s~ 411 (415)
.+.|.+|.|||+-.+
T Consensus 465 --ssHddtILiWdFl~~ 479 (499)
T KOG0281|consen 465 --SSHDDTILIWDFLNG 479 (499)
T ss_pred --ccCCCeEEEEEcCCC
Confidence 456789999998654
No 49
>PTZ00420 coronin; Provisional
Probab=99.95 E-value=1.4e-25 Score=225.91 Aligned_cols=221 Identities=12% Similarity=0.213 Sum_probs=171.6
Q ss_pred CCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCC-CCeEEEEECCCcEEEEECCCCe--------eeEEecCCCccEEEE
Q 014934 186 GNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANR-NTHLAVGTSHGKVQIWDASRCK--------RVRTMEGHRLRVGAL 256 (415)
Q Consensus 186 d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~-g~~la~g~~dg~V~iwd~~~~~--------~~~~l~~h~~~V~~l 256 (415)
.+.|++|+.........+. +|.+.|.+++|+|+ +.+||+|+.||.|+|||+.++. .+..+.+|...|.++
T Consensus 53 ~gvI~L~~~~r~~~v~~L~-gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sV 131 (568)
T PTZ00420 53 IGAIRLENQMRKPPVIKLK-GHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISII 131 (568)
T ss_pred eeEEEeeecCCCceEEEEc-CCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEE
Confidence 4678999887665555554 89999999999996 7899999999999999997542 345678999999999
Q ss_pred EeeC---CEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEeccCC
Q 014934 257 AWSS---SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHT 333 (415)
Q Consensus 257 ~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~~h~ 333 (415)
+|++ .+|++++.|++|++||++++.. ...+. |...|.+++|+|+|.+|++++.|+.|+|||+++++.+.++.+|.
T Consensus 132 af~P~g~~iLaSgS~DgtIrIWDl~tg~~-~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~ 209 (568)
T PTZ00420 132 DWNPMNYYIMCSSGFDSFVNIWDIENEKR-AFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHD 209 (568)
T ss_pred EECCCCCeEEEEEeCCCeEEEEECCCCcE-EEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEeccc
Confidence 9995 3568999999999999998873 44444 56789999999999999999999999999999999999999998
Q ss_pred CcEEEE-----EEcCCCCcEEEEEcC-CCCCeEEEEECCC-CcEEEEeeCCC--CEEEEEE-CCCCCeEEEEEecCCCcE
Q 014934 334 AAVKAI-----AWSPHLHGLLASGGG-TADRCIRFWNTTT-NTHLSCMDTGS--QVCNLVW-SKNVNELVSTHGYSQNQI 403 (415)
Q Consensus 334 ~~V~~l-----~~sp~~~~llasggg-~~d~~I~iwd~~t-~~~~~~~~~~~--~V~~l~~-s~~~~~l~s~~g~~dg~I 403 (415)
+.+... .|++++..++++|.. ..++.|+|||+++ ++++..+.... .+....| .+++..+++ |..|+.|
T Consensus 210 g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~ls--GkGD~tI 287 (568)
T PTZ00420 210 GGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLI--GKGDGNC 287 (568)
T ss_pred CCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEE--EECCCeE
Confidence 765432 345787755555530 1125899999995 66666655333 2222334 445777777 7789999
Q ss_pred EEEECCCC
Q 014934 404 IVWRYPTM 411 (415)
Q Consensus 404 ~vw~~~s~ 411 (415)
++|++...
T Consensus 288 r~~e~~~~ 295 (568)
T PTZ00420 288 RYYQHSLG 295 (568)
T ss_pred EEEEccCC
Confidence 99999654
No 50
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=8.8e-27 Score=219.04 Aligned_cols=235 Identities=24% Similarity=0.346 Sum_probs=204.4
Q ss_pred ceeEeecCC--CcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEe
Q 014934 169 YLNLVDWSS--HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTM 246 (415)
Q Consensus 169 ~i~~l~ws~--~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l 246 (415)
.|..++||| ..-+|+.+.-.|.||+..+....+.+. ...+.|.+++|-.||++||+|...|.|+|||+.+...++.+
T Consensus 28 ~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~~s-rFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~ 106 (487)
T KOG0310|consen 28 SVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKTFS-RFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQL 106 (487)
T ss_pred cceeEecCCCCCCceEEecccEEEEEecchhhhhhhHH-hhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHH
Confidence 588999999 456777778899999998887766553 55689999999999999999999999999998877788899
Q ss_pred cCCCccEEEEEee---CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCC-CCEEEEEeCCCcEEEEECCC
Q 014934 247 EGHRLRVGALAWS---SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYD-NRELASGGNDNRLFVWNQHS 322 (415)
Q Consensus 247 ~~h~~~V~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd-g~~lasg~~dg~I~iwd~~~ 322 (415)
.+|+.+|..+.|+ +..|++|+.|+.+++||+.+.. ....+.+|+..|.|.+|+|. +.+++||+.||.|++||++.
T Consensus 107 ~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~-v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~ 185 (487)
T KOG0310|consen 107 YAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY-VQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRS 185 (487)
T ss_pred hhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcE-EEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEecc
Confidence 9999999999998 4689999999999999999887 46688999999999999995 45789999999999999998
Q ss_pred C-ceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCc-EEEEee-CCCCEEEEEECCCCCeEEEEEecC
Q 014934 323 T-QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNT-HLSCMD-TGSQVCNLVWSKNVNELVSTHGYS 399 (415)
Q Consensus 323 ~-~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~-~~~~~~-~~~~V~~l~~s~~~~~l~s~~g~~ 399 (415)
. ..+.++ .|..+|-.+.+-|.|. +++++| ...|++||+.+|. .+.... |...|+|+.+..++..|++ |+-
T Consensus 186 ~~~~v~el-nhg~pVe~vl~lpsgs-~iasAg---Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS--~sL 258 (487)
T KOG0310|consen 186 LTSRVVEL-NHGCPVESVLALPSGS-LIASAG---GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLS--GSL 258 (487)
T ss_pred CCceeEEe-cCCCceeeEEEcCCCC-EEEEcC---CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEee--ccc
Confidence 7 667777 7999999999999987 888876 5889999999654 444444 7888999999999999999 889
Q ss_pred CCcEEEEECCCCc
Q 014934 400 QNQIIVWRYPTMS 412 (415)
Q Consensus 400 dg~I~vw~~~s~~ 412 (415)
|+.+++|++.+.+
T Consensus 259 D~~VKVfd~t~~K 271 (487)
T KOG0310|consen 259 DRHVKVFDTTNYK 271 (487)
T ss_pred ccceEEEEccceE
Confidence 9999999977654
No 51
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=3.1e-26 Score=215.41 Aligned_cols=231 Identities=22% Similarity=0.269 Sum_probs=197.4
Q ss_pred eeEeecCC-CcEEEEEc-CCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCC-CCeEEEEECCCcEEEEECCCCeeeEEe
Q 014934 170 LNLVDWSS-HNVLAVGL-GNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANR-NTHLAVGTSHGKVQIWDASRCKRVRTM 246 (415)
Q Consensus 170 i~~l~ws~-~~~la~~~-d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~-g~~la~g~~dg~V~iwd~~~~~~~~~l 246 (415)
+.+++|-. +.+||+|. .|.|+|+|..+..+.+.+. .|..+|..+.|+|. +..|++|+.|+.+++||+.+......+
T Consensus 71 v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~-ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l 149 (487)
T KOG0310|consen 71 VYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLY-AHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAEL 149 (487)
T ss_pred eeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHh-hccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEe
Confidence 55778877 88888884 5899999976655556555 89999999999995 567888899999999999998877789
Q ss_pred cCCCccEEEEEee---CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Q 014934 247 EGHRLRVGALAWS---SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHST 323 (415)
Q Consensus 247 ~~h~~~V~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~ 323 (415)
.+|...|.|.+|+ ++++++||.||.|++||++.....+.. ..|..+|..+.+-|.|.++|+++. +.|+|||+.+|
T Consensus 150 ~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~e-lnhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G 227 (487)
T KOG0310|consen 150 SGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVE-LNHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTG 227 (487)
T ss_pred cCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEE-ecCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCC
Confidence 9999999999998 469999999999999999988634444 458999999999999999999876 56999999855
Q ss_pred -ceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEEEEecCCCc
Q 014934 324 -QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQ 402 (415)
Q Consensus 324 -~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~dg~ 402 (415)
+.+..+..|...|+|+++..++..| .++| .|+.+++||+.+-+.+..+...++|.+++.+|+++.++. |.++|.
T Consensus 228 ~qll~~~~~H~KtVTcL~l~s~~~rL-lS~s--LD~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~vi--GmsnGl 302 (487)
T KOG0310|consen 228 GQLLTSMFNHNKTVTCLRLASDSTRL-LSGS--LDRHVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVI--GMSNGL 302 (487)
T ss_pred ceehhhhhcccceEEEEEeecCCceE-eecc--cccceEEEEccceEEEEeeecccceeeEEecCCCceEEE--ecccce
Confidence 5555665699999999999988744 5555 899999999999999999999999999999999999999 888988
Q ss_pred EEEEEC
Q 014934 403 IIVWRY 408 (415)
Q Consensus 403 I~vw~~ 408 (415)
+.+=+.
T Consensus 303 v~~rr~ 308 (487)
T KOG0310|consen 303 VSIRRR 308 (487)
T ss_pred eeeehh
Confidence 776543
No 52
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.95 E-value=3.2e-26 Score=213.82 Aligned_cols=240 Identities=20% Similarity=0.382 Sum_probs=194.5
Q ss_pred CcceeEeecCC--CcEEEEEc-CCeEEEEECCCCCeEEe---------EecCCCCCeEEEEEcCCC-CeEEEEECCCcEE
Q 014934 167 DFYLNLVDWSS--HNVLAVGL-GNCVYLWNACSSKVTKL---------CDLGIDDSVCSVGWANRN-THLAVGTSHGKVQ 233 (415)
Q Consensus 167 ~~~i~~l~ws~--~~~la~~~-d~~V~iwd~~~~~~~~~---------~~~~~~~~V~~v~~sp~g-~~la~g~~dg~V~ 233 (415)
+-.||.+.+-| .++||+.. ++.|+|||.....-... ...+|.+.-++++|++.. -+|++|+.|+.|.
T Consensus 124 ~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~ 203 (422)
T KOG0264|consen 124 DGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTIC 203 (422)
T ss_pred CccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEE
Confidence 34566677777 45777764 57899999865321110 112787778899999854 4789999999999
Q ss_pred EEECCCCe-------eeEEecCCCccEEEEEee---CCEEEEEeCCCcEEEEECCC-CCccEEEeccccCCeEEEEEeC-
Q 014934 234 IWDASRCK-------RVRTMEGHRLRVGALAWS---SSLLSSGSRDKSILQRDIRA-QEDFVSKLSGHKSEVCGLKWSY- 301 (415)
Q Consensus 234 iwd~~~~~-------~~~~l~~h~~~V~~l~~~---~~~l~sgs~dg~I~iwd~~~-~~~~~~~~~~h~~~V~~l~~sp- 301 (415)
+||+.... ....+.+|...|..++|+ ..+|++++.|+.+.|||+|+ ..++.+...+|.++|.|++|+|
T Consensus 204 lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~ 283 (422)
T KOG0264|consen 204 LWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPF 283 (422)
T ss_pred EEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCC
Confidence 99996432 345678999999999998 47999999999999999996 3345677889999999999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCC-ceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEE---------
Q 014934 302 DNRELASGGNDNRLFVWNQHST-QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHL--------- 371 (415)
Q Consensus 302 dg~~lasg~~dg~I~iwd~~~~-~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~--------- 371 (415)
++..||+|+.|++|.+||+++- ++++++.+|...|..|.|+|+...+||++| .|+.+.+||+..-...
T Consensus 284 ~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg--~D~rl~vWDls~ig~eq~~eda~dg 361 (422)
T KOG0264|consen 284 NEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSG--TDRRLNVWDLSRIGEEQSPEDAEDG 361 (422)
T ss_pred CCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecc--cCCcEEEEeccccccccChhhhccC
Confidence 6678899999999999999975 678999999999999999999999999998 9999999999742111
Q ss_pred -----EEe-eCCCCEEEEEECCCCCeEEEEEecCCCcEEEEECC
Q 014934 372 -----SCM-DTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYP 409 (415)
Q Consensus 372 -----~~~-~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~ 409 (415)
... .|...|..+.|+|+..+++++ ...||.+.||++.
T Consensus 362 ppEllF~HgGH~~kV~DfsWnp~ePW~I~S-vaeDN~LqIW~~s 404 (422)
T KOG0264|consen 362 PPELLFIHGGHTAKVSDFSWNPNEPWTIAS-VAEDNILQIWQMA 404 (422)
T ss_pred CcceeEEecCcccccccccCCCCCCeEEEE-ecCCceEEEeecc
Confidence 111 255779999999999998887 5689999999986
No 53
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=6.3e-26 Score=225.68 Aligned_cols=238 Identities=20% Similarity=0.303 Sum_probs=206.7
Q ss_pred CCcceeEeecCC-CcEEEEEc-CCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeee
Q 014934 166 DDFYLNLVDWSS-HNVLAVGL-GNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRV 243 (415)
Q Consensus 166 ~~~~i~~l~ws~-~~~la~~~-d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~ 243 (415)
.|-.|..++|+| +.++++|. |-.|++|+..+.++...+. +|-+.|..+.|++.-.++++++.|-+|+||+.++.+++
T Consensus 50 HdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~-GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~i 128 (1202)
T KOG0292|consen 50 HDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLL-GHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCI 128 (1202)
T ss_pred cCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhc-cccceeEEeeccCCCceEEEccCCCeEEEEeccCCceE
Confidence 355799999999 66777765 4689999999988876664 99999999999999999999999999999999999999
Q ss_pred EEecCCCccEEEEEeeC--CEEEEEeCCCcEEEEECCCCC----------------------------ccEEEeccccCC
Q 014934 244 RTMEGHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQE----------------------------DFVSKLSGHKSE 293 (415)
Q Consensus 244 ~~l~~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~----------------------------~~~~~~~~h~~~ 293 (415)
..+.||...|.|..|+| +.++++|-|.+|++||+..-. -..+.+.||...
T Consensus 129 avltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRG 208 (1202)
T KOG0292|consen 129 AVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRG 208 (1202)
T ss_pred EEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccc
Confidence 99999999999999996 799999999999999985311 123457899999
Q ss_pred eEEEEEeCCCCEEEEEeCCCcEEEEECCCCce--eEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEE
Q 014934 294 VCGLKWSYDNRELASGGNDNRLFVWNQHSTQP--VLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHL 371 (415)
Q Consensus 294 V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~--~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~ 371 (415)
|+-++|+|.-.+|++|+.|..|++|.+...+. +-+..+|...|.++-|+|.+. ++.|.| +|++|++||+...+.+
T Consensus 209 VNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~-lIlSns--EDksirVwDm~kRt~v 285 (1202)
T KOG0292|consen 209 VNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQD-LILSNS--EDKSIRVWDMTKRTSV 285 (1202)
T ss_pred cceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccc-eeEecC--CCccEEEEecccccce
Confidence 99999999999999999999999999876543 446679999999999999987 777776 8999999999999999
Q ss_pred EEee-CCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCC
Q 014934 372 SCMD-TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPT 410 (415)
Q Consensus 372 ~~~~-~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s 410 (415)
+++. .....+.++-+|..+.++++ .|+-+.||+++.
T Consensus 286 ~tfrrendRFW~laahP~lNLfAAg---HDsGm~VFkleR 322 (1202)
T KOG0292|consen 286 QTFRRENDRFWILAAHPELNLFAAG---HDSGMIVFKLER 322 (1202)
T ss_pred eeeeccCCeEEEEEecCCcceeeee---cCCceEEEEEcc
Confidence 9986 45678999999999999884 366778888763
No 54
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.3e-24 Score=195.02 Aligned_cols=238 Identities=18% Similarity=0.227 Sum_probs=197.7
Q ss_pred cceeEeecCC-CcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEEC--CCcEEEEECCCCeee
Q 014934 168 FYLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTS--HGKVQIWDASRCKRV 243 (415)
Q Consensus 168 ~~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~--dg~V~iwd~~~~~~~ 243 (415)
-.+++++|++ +..|+++ .|..+.|||..+++..+.+. .+.-.|..++|......++.++. |.+|+..++.+.+.+
T Consensus 15 ~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~-skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkyl 93 (311)
T KOG1446|consen 15 GKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTIN-SKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYL 93 (311)
T ss_pred CceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEee-cccccccEEEEecCCceEEEccCCCCCceEEEEeecCceE
Confidence 3589999999 6666665 57799999999999988886 44557888899887777776666 789999999999999
Q ss_pred EEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECC
Q 014934 244 RTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQH 321 (415)
Q Consensus 244 ~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~ 321 (415)
+.+.||...|..|+.+ ++.+++++.|++|++||+|..+ +...+.....+| .+|+|+|-++|++...+.|++||++
T Consensus 94 RYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~-cqg~l~~~~~pi--~AfDp~GLifA~~~~~~~IkLyD~R 170 (311)
T KOG1446|consen 94 RYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKK-CQGLLNLSGRPI--AAFDPEGLIFALANGSELIKLYDLR 170 (311)
T ss_pred EEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCC-CceEEecCCCcc--eeECCCCcEEEEecCCCeEEEEEec
Confidence 9999999999999999 4899999999999999999776 344444333334 6899999999999988899999998
Q ss_pred CC--ceeEEec---cCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCC----CCEEEEEECCCCCeE
Q 014934 322 ST--QPVLKYC---EHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTG----SQVCNLVWSKNVNEL 392 (415)
Q Consensus 322 ~~--~~~~~~~---~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~----~~V~~l~~s~~~~~l 392 (415)
.- .|..++. +.....+.+.|+|+|+.+|++. ..+.+++.|.-+|..+..+... .--....|+||++++
T Consensus 171 s~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT---~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fv 247 (311)
T KOG1446|consen 171 SFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLST---NASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFV 247 (311)
T ss_pred ccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEe---CCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEE
Confidence 64 4555543 3466789999999999999877 5899999999999988887632 123578999999999
Q ss_pred EEEEecCCCcEEEEECCCCccc
Q 014934 393 VSTHGYSQNQIIVWRYPTMSKV 414 (415)
Q Consensus 393 ~s~~g~~dg~I~vw~~~s~~~l 414 (415)
++ |+.||.|.+|++.++.++
T Consensus 248 l~--gs~dg~i~vw~~~tg~~v 267 (311)
T KOG1446|consen 248 LS--GSDDGTIHVWNLETGKKV 267 (311)
T ss_pred EE--ecCCCcEEEEEcCCCcEe
Confidence 99 889999999999998875
No 55
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.95 E-value=5.8e-25 Score=208.31 Aligned_cols=238 Identities=20% Similarity=0.398 Sum_probs=196.3
Q ss_pred CcceeEeecCC-CcEEEEE-cCCeEEEEECCCCCeEEeEec-CCCCCeEEEEEcCCCCeEEEEECC----CcEEEEECCC
Q 014934 167 DFYLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDL-GIDDSVCSVGWANRNTHLAVGTSH----GKVQIWDASR 239 (415)
Q Consensus 167 ~~~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~~-~~~~~V~~v~~sp~g~~la~g~~d----g~V~iwd~~~ 239 (415)
...++...++| +.++|.| ..|+|+||+....+.+...++ .-.++|..++|+.++++|++.+.. |.+.+|| +
T Consensus 59 ~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~D--S 136 (603)
T KOG0318|consen 59 AHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWD--S 136 (603)
T ss_pred cceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEec--C
Confidence 34578889999 7778877 358999999877554333333 336899999999999988776542 4466676 5
Q ss_pred CeeeEEecCCCccEEEEEee---CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEE
Q 014934 240 CKRVRTMEGHRLRVGALAWS---SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLF 316 (415)
Q Consensus 240 ~~~~~~l~~h~~~V~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~ 316 (415)
+..+..+.+|...|.+++|. |-.+++|+.|++|.+|+=.-.+ ....+..|..-|.++.|+|||.+||+.+.||+|.
T Consensus 137 G~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFK-Fk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~ 215 (603)
T KOG0318|consen 137 GNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFK-FKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIY 215 (603)
T ss_pred CCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCee-eeecccccccceeeEEECCCCCeEEEecCCccEE
Confidence 66788999999999999997 5789999999999999854333 5566778999999999999999999999999999
Q ss_pred EEECCCCceeEEec---cCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee------------------
Q 014934 317 VWNQHSTQPVLKYC---EHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD------------------ 375 (415)
Q Consensus 317 iwd~~~~~~~~~~~---~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~------------------ 375 (415)
+||-.+++.+..+. +|++.|.+|+|+||+..++.++ .|.+++|||+.+.+++.++.
T Consensus 216 iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~S---aDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~ 292 (603)
T KOG0318|consen 216 IYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVS---ADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDH 292 (603)
T ss_pred EEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEec---CCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCe
Confidence 99999999999998 8999999999999998665555 69999999998776544321
Q ss_pred --------------------------CCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCCc
Q 014934 376 --------------------------TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMS 412 (415)
Q Consensus 376 --------------------------~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~ 412 (415)
|...|+++..++++.+|++ |+.||.|.-|+..++.
T Consensus 293 lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~S--gsyDG~I~~W~~~~g~ 353 (603)
T KOG0318|consen 293 LITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYS--GSYDGHINSWDSGSGT 353 (603)
T ss_pred EEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEe--eccCceEEEEecCCcc
Confidence 3345889999999999999 8899999999998775
No 56
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.94 E-value=3.1e-25 Score=222.77 Aligned_cols=247 Identities=20% Similarity=0.316 Sum_probs=208.6
Q ss_pred CCCceeccCCCCCCCcceeEeecCC-CcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCC
Q 014934 153 RSPYKILDAPALQDDFYLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHG 230 (415)
Q Consensus 153 ~~p~~~ld~~~l~~~~~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg 230 (415)
......+-.+...+.-.|.++++.. +++|..| .|.++++||..+|++...+. +|.+.|.++... +.++++|+.|.
T Consensus 235 ~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~-gh~stv~~~~~~--~~~~~sgs~D~ 311 (537)
T KOG0274|consen 235 LNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQ-GHTSSVRCLTID--PFLLVSGSRDN 311 (537)
T ss_pred cccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEec-CCCceEEEEEcc--CceEeeccCCc
Confidence 3333333333333444577888876 6666666 59999999999999999997 899999998764 55788899999
Q ss_pred cEEEEECCCCeeeEEecCCCccEEEEEeeCCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEe
Q 014934 231 KVQIWDASRCKRVRTMEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGG 310 (415)
Q Consensus 231 ~V~iwd~~~~~~~~~l~~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~ 310 (415)
+|++|++.++.++..+.+|.+.|.++..++.++++|+.|++|++||+.+.+ ++..+.+|...|.++.+.+. ..+++|+
T Consensus 312 tVkVW~v~n~~~l~l~~~h~~~V~~v~~~~~~lvsgs~d~~v~VW~~~~~~-cl~sl~gH~~~V~sl~~~~~-~~~~Sgs 389 (537)
T KOG0274|consen 312 TVKVWDVTNGACLNLLRGHTGPVNCVQLDEPLLVSGSYDGTVKVWDPRTGK-CLKSLSGHTGRVYSLIVDSE-NRLLSGS 389 (537)
T ss_pred eEEEEeccCcceEEEeccccccEEEEEecCCEEEEEecCceEEEEEhhhce-eeeeecCCcceEEEEEecCc-ceEEeee
Confidence 999999999999999999999999999999999999999999999999776 89999999999999988755 8999999
Q ss_pred CCCcEEEEECCCC-ceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCC--CCEEEEEECC
Q 014934 311 NDNRLFVWNQHST-QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTG--SQVCNLVWSK 387 (415)
Q Consensus 311 ~dg~I~iwd~~~~-~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~--~~V~~l~~s~ 387 (415)
.|+.|++||+++. +++..+.+|.+-|..+.+.. + +|++++ .|+.|++||..+++++..+.+. ..|..+++.
T Consensus 390 ~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~~--~-~Lvs~~--aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~- 463 (537)
T KOG0274|consen 390 LDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLRD--N-FLVSSS--ADGTIKLWDAEEGECLRTLEGRHVGGVSALALG- 463 (537)
T ss_pred eccceEeecCCchhhhhhhhcCCccccccccccc--c-eeEecc--ccccEEEeecccCceeeeeccCCcccEEEeecC-
Confidence 9999999999999 99999999999997776653 3 777776 8999999999999999999864 667777776
Q ss_pred CCCeEEEEEecCCCcEEEEECCCCcc
Q 014934 388 NVNELVSTHGYSQNQIIVWRYPTMSK 413 (415)
Q Consensus 388 ~~~~l~s~~g~~dg~I~vw~~~s~~~ 413 (415)
...+++ ++.|+.+.+||+++++.
T Consensus 464 -~~~il~--s~~~~~~~l~dl~~~~~ 486 (537)
T KOG0274|consen 464 -KEEILC--SSDDGSVKLWDLRSGTL 486 (537)
T ss_pred -cceEEE--EecCCeeEEEecccCch
Confidence 345555 56899999999998864
No 57
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.94 E-value=2.8e-26 Score=205.63 Aligned_cols=243 Identities=17% Similarity=0.289 Sum_probs=211.6
Q ss_pred CCCCcceeEeecCC-CcEEEEE-cCCeEEEEECCCCCeEEeEec-------CCCCCeEEEEEcCCCCeEEEEECCCcEEE
Q 014934 164 LQDDFYLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDL-------GIDDSVCSVGWANRNTHLAVGTSHGKVQI 234 (415)
Q Consensus 164 l~~~~~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~~-------~~~~~V~~v~~sp~g~~la~g~~dg~V~i 234 (415)
+....++.|..||| +++|+.| .||.|.+||..+|++.+-+.. -+.+.|.|+.|+.|...||+|+.||.|++
T Consensus 210 Fg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKv 289 (508)
T KOG0275|consen 210 FGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKV 289 (508)
T ss_pred cccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEE
Confidence 34455788999999 8888888 489999999999987654432 34689999999999999999999999999
Q ss_pred EECCCCeeeEEec-CCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeC
Q 014934 235 WDASRCKRVRTME-GHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGN 311 (415)
Q Consensus 235 wd~~~~~~~~~l~-~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~ 311 (415)
|.+.+|.+++.+. .|...|+|+.|+ +..+++++.|.++++.-+.+++ ++..+.+|...|+...|.+||..+++++.
T Consensus 290 Wri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK-~LKEfrGHsSyvn~a~ft~dG~~iisaSs 368 (508)
T KOG0275|consen 290 WRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGK-CLKEFRGHSSYVNEATFTDDGHHIISASS 368 (508)
T ss_pred EEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccch-hHHHhcCccccccceEEcCCCCeEEEecC
Confidence 9999999999997 899999999998 6789999999999999999987 68899999999999999999999999999
Q ss_pred CCcEEEEECCCCceeEEecc--CCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee----CCCCEEEEEE
Q 014934 312 DNRLFVWNQHSTQPVLKYCE--HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD----TGSQVCNLVW 385 (415)
Q Consensus 312 dg~I~iwd~~~~~~~~~~~~--h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~----~~~~V~~l~~ 385 (415)
||+|+||+.++.+++.+|+. ...+|..+..-|.+..-++.+. ..++|.|.++. |+.+..+. .++...+.+.
T Consensus 369 DgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCN--rsntv~imn~q-GQvVrsfsSGkREgGdFi~~~l 445 (508)
T KOG0275|consen 369 DGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCN--RSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAIL 445 (508)
T ss_pred CccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEc--CCCeEEEEecc-ceEEeeeccCCccCCceEEEEe
Confidence 99999999999999988874 5567889988888776677666 78999999986 77777775 3455667889
Q ss_pred CCCCCeEEEEEecCCCcEEEEECCCCc
Q 014934 386 SKNVNELVSTHGYSQNQIIVWRYPTMS 412 (415)
Q Consensus 386 s~~~~~l~s~~g~~dg~I~vw~~~s~~ 412 (415)
+|.|.++.+ -++|+.++.+.+.+++
T Consensus 446 SpkGewiYc--igED~vlYCF~~~sG~ 470 (508)
T KOG0275|consen 446 SPKGEWIYC--IGEDGVLYCFSVLSGK 470 (508)
T ss_pred cCCCcEEEE--EccCcEEEEEEeecCc
Confidence 999999988 5699999999998764
No 58
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=1.3e-24 Score=189.90 Aligned_cols=235 Identities=15% Similarity=0.268 Sum_probs=201.7
Q ss_pred ceeEeecCC--CcEEEE-EcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEE
Q 014934 169 YLNLVDWSS--HNVLAV-GLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRT 245 (415)
Q Consensus 169 ~i~~l~ws~--~~~la~-~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~ 245 (415)
.+.-+.|+| .+++++ +.|.+|++||...+++..... ....-.-+.|+|+|.++++|..|..|.+.|.++.+.+..
T Consensus 66 svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~--~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~ 143 (313)
T KOG1407|consen 66 SVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIE--TKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNE 143 (313)
T ss_pred chhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEee--ccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeeh
Confidence 355677887 444544 468899999999999887775 344556789999999999999999999999998877766
Q ss_pred ecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Q 014934 246 MEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHST 323 (415)
Q Consensus 246 l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~ 323 (415)
.+ ..-.+..++|+ +++++.....|.|.|.....-+ ++..+++|.....|++|+|+|++||+|+.|-.+.+||+..-
T Consensus 144 ~~-~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLk-pv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~EL 221 (313)
T KOG1407|consen 144 EQ-FKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLK-PVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDEL 221 (313)
T ss_pred hc-ccceeeeeeecCCCCEEEEecCCceEEEEeccccc-cccccccCCcceEEEEECCCCceEeeccccceeeccChhHh
Confidence 55 45568888887 5777777778999999887665 68899999999999999999999999999999999999999
Q ss_pred ceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEEEEecCC---
Q 014934 324 QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQ--- 400 (415)
Q Consensus 324 ~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~d--- 400 (415)
-++..+..+.-+|..|.|+-+|+ +||+++ +|..|-|-++++|..+..+.+.++...++|+|....|+.+....|
T Consensus 222 iC~R~isRldwpVRTlSFS~dg~-~lASaS--EDh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk~~LLAyA~ddk~~d~ 298 (313)
T KOG1407|consen 222 ICERCISRLDWPVRTLSFSHDGR-MLASAS--EDHFIDIAEVETGDRVWEIPCEGPTFTVAWHPKRPLLAYACDDKDGDS 298 (313)
T ss_pred hhheeeccccCceEEEEeccCcc-eeeccC--ccceEEeEecccCCeEEEeeccCCceeEEecCCCceeeEEecCCCCcc
Confidence 89999999999999999999997 889887 999999999999999999999999999999999999988644333
Q ss_pred ----CcEEEEECCC
Q 014934 401 ----NQIIVWRYPT 410 (415)
Q Consensus 401 ----g~I~vw~~~s 410 (415)
|.+++|-+++
T Consensus 299 ~reag~vKiFG~~~ 312 (313)
T KOG1407|consen 299 NREAGTVKIFGLSN 312 (313)
T ss_pred ccccceeEEecCCC
Confidence 4788887664
No 59
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.94 E-value=3.8e-25 Score=202.24 Aligned_cols=234 Identities=23% Similarity=0.416 Sum_probs=196.1
Q ss_pred eeEeecCC-----CcEEEEEcCCeEEEEECCCCCeE----EeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECC--
Q 014934 170 LNLVDWSS-----HNVLAVGLGNCVYLWNACSSKVT----KLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDAS-- 238 (415)
Q Consensus 170 i~~l~ws~-----~~~la~~~d~~V~iwd~~~~~~~----~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~-- 238 (415)
|..++|-. ..++.++.|.++++|..+.++.. ..+. +|...|-+|...++|..+++|+.|.+|.||+..
T Consensus 147 ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~-GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~ 225 (423)
T KOG0313|consen 147 IKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCR-GHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETD 225 (423)
T ss_pred eeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhc-ccccceeEEEecCCCCeEEeecccceeeecccCCC
Confidence 55566643 23666678999999988776542 2232 899999999999999999999999999999931
Q ss_pred -----------------------CCeeeEEecCCCccEEEEEee-CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCe
Q 014934 239 -----------------------RCKRVRTMEGHRLRVGALAWS-SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEV 294 (415)
Q Consensus 239 -----------------------~~~~~~~l~~h~~~V~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V 294 (415)
+..++.++.+|.++|.++.|. ...+++++.|.+|+.||+.++. ....+.+ ...+
T Consensus 226 ~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~-~~~~~~~-~ksl 303 (423)
T KOG0313|consen 226 EEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGG-LKSTLTT-NKSL 303 (423)
T ss_pred ccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCCCceEeecccceEEEEEeeccc-ceeeeec-Ccce
Confidence 123566788999999999999 5899999999999999999987 3444443 4679
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEECCCC---ceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCc-E
Q 014934 295 CGLKWSYDNRELASGGNDNRLFVWNQHST---QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNT-H 370 (415)
Q Consensus 295 ~~l~~spdg~~lasg~~dg~I~iwd~~~~---~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~-~ 370 (415)
.++..+|..++||+|+.|..|++||.+++ -..++|.+|++.|.++.|+|...++|++++ .|+++++||+++.+ +
T Consensus 304 ~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S--~D~t~klWDvRS~k~p 381 (423)
T KOG0313|consen 304 NCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGS--YDNTVKLWDVRSTKAP 381 (423)
T ss_pred eEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEe--cCCeEEEEEeccCCCc
Confidence 99999999999999999999999999876 346788899999999999999999999998 99999999999877 7
Q ss_pred EEEee-CCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCC
Q 014934 371 LSCMD-TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTM 411 (415)
Q Consensus 371 ~~~~~-~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~ 411 (415)
+..+. |...|.++.|...+ .+++ |+.|++|+|+.....
T Consensus 382 lydI~~h~DKvl~vdW~~~~-~IvS--GGaD~~l~i~~~~~~ 420 (423)
T KOG0313|consen 382 LYDIAGHNDKVLSVDWNEGG-LIVS--GGADNKLRIFKGSPI 420 (423)
T ss_pred ceeeccCCceEEEEeccCCc-eEEe--ccCcceEEEeccccc
Confidence 88776 77889999998653 5677 889999999987643
No 60
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.94 E-value=6.8e-25 Score=195.19 Aligned_cols=230 Identities=23% Similarity=0.356 Sum_probs=195.1
Q ss_pred ceeEeecCC--CcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCC-CeEEEEECCCcEEEEECCCCeeeEE
Q 014934 169 YLNLVDWSS--HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRN-THLAVGTSHGKVQIWDASRCKRVRT 245 (415)
Q Consensus 169 ~i~~l~ws~--~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g-~~la~g~~dg~V~iwd~~~~~~~~~ 245 (415)
.|.-+.|.. ..++.+|.|.+|+.||+++|+..+... +|.+.|.++.-+.-| .++.+|+.||+++|||+++...+++
T Consensus 92 AVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k-~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t 170 (338)
T KOG0265|consen 92 AVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHK-GHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKT 170 (338)
T ss_pred eeEeeeeccCCCEEEEecCCceEEEEecccceeeehhc-cccceeeecCccccCCeEEEecCCCceEEEEeecccchhhc
Confidence 467788887 446666789999999999999988887 889999999855555 4677888999999999998888887
Q ss_pred ecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Q 014934 246 MEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHST 323 (415)
Q Consensus 246 l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~ 323 (415)
+. ..-.++++.|+ +..+.+|+-|+.|++||++... ....+.||...|++|..+|+|.++.+-+-|+++++||++-.
T Consensus 171 ~~-~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d-~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~ 248 (338)
T KOG0265|consen 171 FE-NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKND-GLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPF 248 (338)
T ss_pred cc-cceeEEEEEecccccceeeccccCceeeeccccCc-ceEEeecccCceeeEEeccCCCccccccccceEEEEEeccc
Confidence 76 45679999998 6899999999999999999887 68999999999999999999999999999999999998753
Q ss_pred ----ceeEEeccCCC----cEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee-CCCCEEEEEECCCCCeEEE
Q 014934 324 ----QPVLKYCEHTA----AVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKNVNELVS 394 (415)
Q Consensus 324 ----~~~~~~~~h~~----~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~-~~~~V~~l~~s~~~~~l~s 394 (415)
+++..+.+|.. ....++|+|++. .+.+|+ .|+.+++||......+..+. |...|.+++|+|....|.+
T Consensus 249 ~p~~R~v~if~g~~hnfeknlL~cswsp~~~-~i~ags--~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils 325 (338)
T KOG0265|consen 249 APSQRCVKIFQGHIHNFEKNLLKCSWSPNGT-KITAGS--ADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILS 325 (338)
T ss_pred CCCCceEEEeecchhhhhhhcceeeccCCCC-cccccc--ccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEE
Confidence 45777777653 346789999987 444444 89999999999988888776 6678999999999999999
Q ss_pred EEecCCCcEEEE
Q 014934 395 THGYSQNQIIVW 406 (415)
Q Consensus 395 ~~g~~dg~I~vw 406 (415)
+++|.+|.+=
T Consensus 326 --~~sdk~i~lg 335 (338)
T KOG0265|consen 326 --CSSDKTIYLG 335 (338)
T ss_pred --eccCceeEee
Confidence 6789888763
No 61
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.94 E-value=9.1e-26 Score=201.39 Aligned_cols=204 Identities=21% Similarity=0.347 Sum_probs=177.2
Q ss_pred CCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCC------------------CeeeEEecCCCccEEEEEeeC--CEEEE
Q 014934 206 GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASR------------------CKRVRTMEGHRLRVGALAWSS--SLLSS 265 (415)
Q Consensus 206 ~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~------------------~~~~~~l~~h~~~V~~l~~~~--~~l~s 265 (415)
.|...+.+.+|++||.++|+|+.|..|+|.|++. .-.++++..|...|+++.|+| .+|++
T Consensus 110 ~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS 189 (430)
T KOG0640|consen 110 SHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILIS 189 (430)
T ss_pred ecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEe
Confidence 7889999999999999999999999999999851 135778889999999999996 79999
Q ss_pred EeCCCcEEEEECCCCCcc-EEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEe---ccCCCcEEEEEE
Q 014934 266 GSRDKSILQRDIRAQEDF-VSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKY---CEHTAAVKAIAW 341 (415)
Q Consensus 266 gs~dg~I~iwd~~~~~~~-~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~---~~h~~~V~~l~~ 341 (415)
|++|++|+++|+...... ..+......+|.++.|+|.|.+|+.|..-..+++||+++.++...- ..|+++|+++.+
T Consensus 190 ~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Y 269 (430)
T KOG0640|consen 190 GSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRY 269 (430)
T ss_pred ccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEe
Confidence 999999999999765411 1112223468999999999999999999999999999998876554 369999999999
Q ss_pred cCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee---CCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCCccc
Q 014934 342 SPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD---TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKV 414 (415)
Q Consensus 342 sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~---~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~~l 414 (415)
++.++ ++++++ .||.|++||--+++|+.++. .++.||+..|..+|+++++ .+.|..+++|.+.++..+
T Consensus 270 s~t~~-lYvTaS--kDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLs--SG~DS~vkLWEi~t~R~l 340 (430)
T KOG0640|consen 270 SSTGS-LYVTAS--KDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILS--SGKDSTVKLWEISTGRML 340 (430)
T ss_pred cCCcc-EEEEec--cCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEee--cCCcceeeeeeecCCceE
Confidence 99997 999988 99999999999999998885 4688999999999999999 668999999999987654
No 62
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.94 E-value=2.2e-26 Score=216.13 Aligned_cols=201 Identities=22% Similarity=0.417 Sum_probs=174.7
Q ss_pred CCCCCeEEEEEcC-CCCeEEEEECCCcEEEEECCC-CeeeEEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCC
Q 014934 206 GIDDSVCSVGWAN-RNTHLAVGTSHGKVQIWDASR-CKRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQE 281 (415)
Q Consensus 206 ~~~~~V~~v~~sp-~g~~la~g~~dg~V~iwd~~~-~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~ 281 (415)
+|+..|+++.|.| .+.+|++|+.|+.|+||++.. +++++++.+|..+|.+++|+ +..|++++.|+.|++||++++.
T Consensus 212 gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~ 291 (503)
T KOG0282|consen 212 GHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQ 291 (503)
T ss_pred CCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccce
Confidence 8999999999999 899999999999999999976 88999999999999999999 7899999999999999999998
Q ss_pred ccEEEeccccCCeEEEEEeCCC-CEEEEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeE
Q 014934 282 DFVSKLSGHKSEVCGLKWSYDN-RELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCI 360 (415)
Q Consensus 282 ~~~~~~~~h~~~V~~l~~spdg-~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I 360 (415)
+...+. -...+.++.|+||+ +.|++|+.|+.|+.||+++++.++.+..|-+.|..+.|-++|+.++.+. .|+.+
T Consensus 292 -~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissS---Ddks~ 366 (503)
T KOG0282|consen 292 -VLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSS---DDKSV 366 (503)
T ss_pred -EEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeec---cCccE
Confidence 444444 34578999999998 8899999999999999999999999999999999999999999666655 79999
Q ss_pred EEEECCCCcEEEE--------------------------------ee-----------------CCCCEEEEEECCCCCe
Q 014934 361 RFWNTTTNTHLSC--------------------------------MD-----------------TGSQVCNLVWSKNVNE 391 (415)
Q Consensus 361 ~iwd~~t~~~~~~--------------------------------~~-----------------~~~~V~~l~~s~~~~~ 391 (415)
+||+...+-.++. +. ..+.-+.+.|||||.+
T Consensus 367 riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~ 446 (503)
T KOG0282|consen 367 RIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRT 446 (503)
T ss_pred EEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCe
Confidence 9999875432111 00 1134578999999999
Q ss_pred EEEEEecCCCcEEEEECCCCcc
Q 014934 392 LVSTHGYSQNQIIVWRYPTMSK 413 (415)
Q Consensus 392 l~s~~g~~dg~I~vw~~~s~~~ 413 (415)
|++ |..||.+.+||+.+-+.
T Consensus 447 l~S--GdsdG~v~~wdwkt~kl 466 (503)
T KOG0282|consen 447 LCS--GDSDGKVNFWDWKTTKL 466 (503)
T ss_pred EEe--ecCCccEEEeechhhhh
Confidence 999 99999999999987543
No 63
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=6.3e-25 Score=218.89 Aligned_cols=234 Identities=16% Similarity=0.303 Sum_probs=191.1
Q ss_pred CcceeEeecCC-CcEEEEE-cCCeEEEEECCCCC----------------------------e-----------------
Q 014934 167 DFYLNLVDWSS-HNVLAVG-LGNCVYLWNACSSK----------------------------V----------------- 199 (415)
Q Consensus 167 ~~~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~----------------------------~----------------- 199 (415)
+-.|.++.||+ +.+||+| .|+.|+||.+...+ .
T Consensus 267 ~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~ 346 (712)
T KOG0283|consen 267 KGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSP 346 (712)
T ss_pred CCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCCc
Confidence 33599999999 9999998 47899999875500 0
Q ss_pred E-------------EeEe-cCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEecCCCccEEEEEeeC---CE
Q 014934 200 T-------------KLCD-LGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWSS---SL 262 (415)
Q Consensus 200 ~-------------~~~~-~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~~---~~ 262 (415)
. .++. .+|.+.|..+.|+.+ ++|++++.|.+|+||++...+++..|. |...|+|++|+| ++
T Consensus 347 ~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDry 424 (712)
T KOG0283|consen 347 CVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRY 424 (712)
T ss_pred cccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCc
Confidence 0 0001 178899999999965 578899999999999999999999998 999999999995 89
Q ss_pred EEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEec---------cCC
Q 014934 263 LSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYC---------EHT 333 (415)
Q Consensus 263 l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~---------~h~ 333 (415)
|++|+-||.|+||++...+ +..+..-..-|++++|.|||+..+.|+.+|.+++|+....+....+. .|.
T Consensus 425 FiSGSLD~KvRiWsI~d~~--Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~ 502 (712)
T KOG0283|consen 425 FISGSLDGKVRLWSISDKK--VVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGK 502 (712)
T ss_pred EeecccccceEEeecCcCe--eEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCc
Confidence 9999999999999998765 34444445789999999999999999999999999998876655442 133
Q ss_pred CcEEEEEEcCCCCc-EEEEEcCCCCCeEEEEECCCCcEEEEee----CCCCEEEEEECCCCCeEEEEEecCCCcEEEEEC
Q 014934 334 AAVKAIAWSPHLHG-LLASGGGTADRCIRFWNTTTNTHLSCMD----TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRY 408 (415)
Q Consensus 334 ~~V~~l~~sp~~~~-llasggg~~d~~I~iwd~~t~~~~~~~~----~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~ 408 (415)
.|+++.|.|.... +|++. .|..|||+|.++.+++..++ ..++ ....|+.||++|++ +++|..|+||++
T Consensus 503 -rITG~Q~~p~~~~~vLVTS---nDSrIRI~d~~~~~lv~KfKG~~n~~SQ-~~Asfs~Dgk~IVs--~seDs~VYiW~~ 575 (712)
T KOG0283|consen 503 -RITGLQFFPGDPDEVLVTS---NDSRIRIYDGRDKDLVHKFKGFRNTSSQ-ISASFSSDGKHIVS--ASEDSWVYIWKN 575 (712)
T ss_pred -eeeeeEecCCCCCeEEEec---CCCceEEEeccchhhhhhhcccccCCcc-eeeeEccCCCEEEE--eecCceEEEEeC
Confidence 7999999987654 77766 69999999998888877775 2344 45789999999999 679999999998
Q ss_pred CCC
Q 014934 409 PTM 411 (415)
Q Consensus 409 ~s~ 411 (415)
++.
T Consensus 576 ~~~ 578 (712)
T KOG0283|consen 576 DSF 578 (712)
T ss_pred CCC
Confidence 653
No 64
>PTZ00421 coronin; Provisional
Probab=99.93 E-value=9.2e-24 Score=211.59 Aligned_cols=218 Identities=18% Similarity=0.232 Sum_probs=173.0
Q ss_pred cceeEeecCC--CcEEEEE-cCCeEEEEECCCCC-------eEEeEecCCCCCeEEEEEcCCC-CeEEEEECCCcEEEEE
Q 014934 168 FYLNLVDWSS--HNVLAVG-LGNCVYLWNACSSK-------VTKLCDLGIDDSVCSVGWANRN-THLAVGTSHGKVQIWD 236 (415)
Q Consensus 168 ~~i~~l~ws~--~~~la~~-~d~~V~iwd~~~~~-------~~~~~~~~~~~~V~~v~~sp~g-~~la~g~~dg~V~iwd 236 (415)
-.|++++|+| +++|+++ .|+.|++||+.++. ....+. +|...|.+++|+|++ ++|++|+.||.|+|||
T Consensus 76 ~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~-gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWD 154 (493)
T PTZ00421 76 GPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQ-GHTKKVGIVSFHPSAMNVLASAGADMVVNVWD 154 (493)
T ss_pred CCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEec-CCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEE
Confidence 4699999998 4566666 68999999997653 223333 789999999999985 6999999999999999
Q ss_pred CCCCeeeEEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCC-eEEEEEeCCCCEEEEEe---
Q 014934 237 ASRCKRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSE-VCGLKWSYDNRELASGG--- 310 (415)
Q Consensus 237 ~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~-V~~l~~spdg~~lasg~--- 310 (415)
+.+++.+..+.+|...|.+++|+ +.+|++|+.|+.|++||++++. .+..+.+|... +..+.|.+++..|++++
T Consensus 155 l~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~-~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~ 233 (493)
T PTZ00421 155 VERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGT-IVSSVEAHASAKSQRCLWAKRKDLIITLGCSK 233 (493)
T ss_pred CCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCc-EEEEEecCCCCcceEEEEcCCCCeEEEEecCC
Confidence 99999999999999999999998 5799999999999999999887 56777888764 45678999888887754
Q ss_pred -CCCcEEEEECCCCc-eeEEeccC-CCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee--CCCCEEEEEE
Q 014934 311 -NDNRLFVWNQHSTQ-PVLKYCEH-TAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD--TGSQVCNLVW 385 (415)
Q Consensus 311 -~dg~I~iwd~~~~~-~~~~~~~h-~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~--~~~~V~~l~~ 385 (415)
.|+.|++||+++.. ++.....+ ...+....|++++..+++.+. .|+.|++||+.+++.+.... ...++.+++|
T Consensus 234 s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggk--gDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~ 311 (493)
T PTZ00421 234 SQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSK--GEGNIRCFELMNERLTFCSSYSSVEPHKGLCM 311 (493)
T ss_pred CCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEe--CCCeEEEEEeeCCceEEEeeccCCCCCcceEe
Confidence 47899999998754 44444333 345666788999885555443 49999999999998876654 3446778888
Q ss_pred CCCC
Q 014934 386 SKNV 389 (415)
Q Consensus 386 s~~~ 389 (415)
.|.-
T Consensus 312 ~pk~ 315 (493)
T PTZ00421 312 MPKW 315 (493)
T ss_pred cccc
Confidence 8753
No 65
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.93 E-value=1.3e-24 Score=201.71 Aligned_cols=233 Identities=18% Similarity=0.264 Sum_probs=199.6
Q ss_pred ceeEeecCC--CcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEe
Q 014934 169 YLNLVDWSS--HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTM 246 (415)
Q Consensus 169 ~i~~l~ws~--~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l 246 (415)
.+..++..+ ..++..|.|..+.++|..+++++.++. +|...|+.+.++++...+++++.|-.|+||...........
T Consensus 221 gi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~-Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~ 299 (506)
T KOG0289|consen 221 GITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLK-GHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSS 299 (506)
T ss_pred CeeEEeecCCCCcceecCCCCceEEEecchhhhhhhcc-CcceEEEEEEeccchhheeecCCcceEEeeccccccCcccc
Confidence 366777777 455555577899999999999988887 99999999999999999999999999999999888888888
Q ss_pred cCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEec-cccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Q 014934 247 EGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLS-GHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHST 323 (415)
Q Consensus 247 ~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~ 323 (415)
..|.++|+.+..+ +++|++++.||++.+.|++++........ ...-.+++.+|+|||.+|++|..|+.|+|||+.++
T Consensus 300 ~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~ 379 (506)
T KOG0289|consen 300 RPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQ 379 (506)
T ss_pred ccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCc
Confidence 8999999999988 68999999999999999999874332222 23356899999999999999999999999999999
Q ss_pred ceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee--CCCCEEEEEECCCCCeEEEEEecCCC
Q 014934 324 QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD--TGSQVCNLVWSKNVNELVSTHGYSQN 401 (415)
Q Consensus 324 ~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~--~~~~V~~l~~s~~~~~l~s~~g~~dg 401 (415)
..+..|.+|.++|++|+|+.+|- .|+++. .|+.|++||++..+.+.++. ....|..+.|.+.|.+|+. ++.+
T Consensus 380 ~~~a~Fpght~~vk~i~FsENGY-~Lat~a--dd~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~--~g~~- 453 (506)
T KOG0289|consen 380 TNVAKFPGHTGPVKAISFSENGY-WLATAA--DDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGI--AGSD- 453 (506)
T ss_pred cccccCCCCCCceeEEEeccCce-EEEEEe--cCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEe--ecce-
Confidence 99999999999999999999985 556655 79999999999988877775 3446999999999999999 5454
Q ss_pred cEEEEECC
Q 014934 402 QIIVWRYP 409 (415)
Q Consensus 402 ~I~vw~~~ 409 (415)
|+||.+.
T Consensus 454 -l~Vy~~~ 460 (506)
T KOG0289|consen 454 -LQVYICK 460 (506)
T ss_pred -eEEEEEe
Confidence 5555554
No 66
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=4.7e-25 Score=203.40 Aligned_cols=239 Identities=19% Similarity=0.354 Sum_probs=197.5
Q ss_pred CcceeEeecCC--CcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeE
Q 014934 167 DFYLNLVDWSS--HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVR 244 (415)
Q Consensus 167 ~~~i~~l~ws~--~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~ 244 (415)
...|..+.||| ..+|++|.+..+.+||+.+|.....+..++...+.+++|.|||..+++|+.|+.+..||+.. ..+.
T Consensus 269 ~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDg-n~~~ 347 (519)
T KOG0293|consen 269 SQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDG-NILG 347 (519)
T ss_pred cCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCc-chhh
Confidence 34588899999 45667778889999999999998888766678999999999999999999999999999864 3344
Q ss_pred EecCC-CccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECC
Q 014934 245 TMEGH-RLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQH 321 (415)
Q Consensus 245 ~l~~h-~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~ 321 (415)
..++- ...|.+++.. +.++++.+.|..|++++.++... .. +....++|++++.|.|++++++--.+..|++||++
T Consensus 348 ~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~d-r~-lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~ 425 (519)
T KOG0293|consen 348 NWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVD-RG-LISEEQPITSFSISKDGKLALVNLQDQEIHLWDLE 425 (519)
T ss_pred cccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhh-hc-cccccCceeEEEEcCCCcEEEEEcccCeeEEeecc
Confidence 44432 2568888876 78999999999999999987653 22 33345789999999999999999999999999999
Q ss_pred CCceeEEeccCCCc--EEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee-CCCCEEEEEECCCCCeEEEEEec
Q 014934 322 STQPVLKYCEHTAA--VKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKNVNELVSTHGY 398 (415)
Q Consensus 322 ~~~~~~~~~~h~~~--V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~-~~~~V~~l~~s~~~~~l~s~~g~ 398 (415)
..+.+.++.+|+.. +..-+|--....++++|+ +|+.|+||+..+|+++..+. |...|.+++|+|...+++++ ++
T Consensus 426 e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGS--ED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~AS-as 502 (519)
T KOG0293|consen 426 ENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGS--EDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFAS-AS 502 (519)
T ss_pred hhhHHHHhhcccccceEEEeccCCCCcceEEecC--CCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhc-cC
Confidence 99999999999865 334456555556888887 99999999999999999987 55679999999998877665 67
Q ss_pred CCCcEEEEECCCC
Q 014934 399 SQNQIIVWRYPTM 411 (415)
Q Consensus 399 ~dg~I~vw~~~s~ 411 (415)
+||+|+||.....
T Consensus 503 DDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 503 DDGTIRIWGPSDN 515 (519)
T ss_pred CCCeEEEecCCcc
Confidence 9999999987654
No 67
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=2.3e-24 Score=191.91 Aligned_cols=236 Identities=22% Similarity=0.397 Sum_probs=185.8
Q ss_pred eccCCCCCCCcceeEeecCC--CcEEEEE-cCCeEEEEECCC-CCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEE
Q 014934 158 ILDAPALQDDFYLNLVDWSS--HNVLAVG-LGNCVYLWNACS-SKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQ 233 (415)
Q Consensus 158 ~ld~~~l~~~~~i~~l~ws~--~~~la~~-~d~~V~iwd~~~-~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~ 233 (415)
.++.+.-.+| .|.+|+||| .+++++| -|++|++|+++. |.........|.++|.+++|+.||..+++|+.|+.++
T Consensus 19 d~ev~~pP~D-sIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k 97 (347)
T KOG0647|consen 19 DYEVPNPPED-SISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAK 97 (347)
T ss_pred ceecCCCccc-chheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceE
Confidence 3333333334 588999999 6677555 699999999987 4444433347889999999999999999999999999
Q ss_pred EEECCCCeeeEEecCCCccEEEEEeeC----CEEEEEeCCCcEEEEECCCCCccEEE-----------------------
Q 014934 234 IWDASRCKRVRTMEGHRLRVGALAWSS----SLLSSGSRDKSILQRDIRAQEDFVSK----------------------- 286 (415)
Q Consensus 234 iwd~~~~~~~~~l~~h~~~V~~l~~~~----~~l~sgs~dg~I~iwd~~~~~~~~~~----------------------- 286 (415)
+||+.++ .+..+..|.++|.++.|-+ ..|++||.|++|+.||.|.... +..
T Consensus 98 ~wDL~S~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~p-v~t~~LPeRvYa~Dv~~pm~vVata~ 175 (347)
T KOG0647|consen 98 LWDLASG-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNP-VATLQLPERVYAADVLYPMAVVATAE 175 (347)
T ss_pred EEEccCC-CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCe-eeeeeccceeeehhccCceeEEEecC
Confidence 9999998 4567778999999999973 4789999999999999997652 111
Q ss_pred -------e-------ccc----cCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCC--ceeEEeccCC---------CcEE
Q 014934 287 -------L-------SGH----KSEVCGLKWSYDNRELASGGNDNRLFVWNQHST--QPVLKYCEHT---------AAVK 337 (415)
Q Consensus 287 -------~-------~~h----~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~--~~~~~~~~h~---------~~V~ 337 (415)
+ +.+ +-.+.|++..+|....|.|+-+|++.|..+..+ +.-..|+.|. .+|+
T Consensus 176 r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVN 255 (347)
T KOG0647|consen 176 RHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVN 255 (347)
T ss_pred CcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEec
Confidence 1 111 224788888888888899999999999998876 4445666665 2578
Q ss_pred EEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee-CCCCEEEEEECCCCCeEEEEEecC
Q 014934 338 AIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKNVNELVSTHGYS 399 (415)
Q Consensus 338 ~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~-~~~~V~~l~~s~~~~~l~s~~g~~ 399 (415)
+|+|+|. +..|++.| .||++.+||-.....+.... +..+|++..|+.+|.+++.+.|++
T Consensus 256 si~FhP~-hgtlvTaG--sDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~gYD 315 (347)
T KOG0647|consen 256 SIAFHPV-HGTLVTAG--SDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYALGYD 315 (347)
T ss_pred ceEeecc-cceEEEec--CCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEeecc
Confidence 8999995 45777776 69999999998877777754 678899999999999999877764
No 68
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1.1e-24 Score=188.71 Aligned_cols=231 Identities=22% Similarity=0.392 Sum_probs=184.1
Q ss_pred cCCCcEEEEEcCCeEEEEECCCCCe-EEeEec-CCCCCeEEEEEcC--CCCeEEEEECCCcEEEEECCCCe--eeEEecC
Q 014934 175 WSSHNVLAVGLGNCVYLWNACSSKV-TKLCDL-GIDDSVCSVGWAN--RNTHLAVGTSHGKVQIWDASRCK--RVRTMEG 248 (415)
Q Consensus 175 ws~~~~la~~~d~~V~iwd~~~~~~-~~~~~~-~~~~~V~~v~~sp--~g~~la~g~~dg~V~iwd~~~~~--~~~~l~~ 248 (415)
+...++.++++|+.|+|+....+.. ..+.++ +|.++|.-++|.. -|.+||+++.||.|.||.-++++ .......
T Consensus 21 yygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~ 100 (299)
T KOG1332|consen 21 YYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAA 100 (299)
T ss_pred hhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhh
Confidence 3344555556899999999877653 333333 9999999999976 79999999999999999988774 3445568
Q ss_pred CCccEEEEEeeC----CEEEEEeCCCcEEEEECCCCC--ccEEEeccccCCeEEEEEeCC---C-----------CEEEE
Q 014934 249 HRLRVGALAWSS----SLLSSGSRDKSILQRDIRAQE--DFVSKLSGHKSEVCGLKWSYD---N-----------RELAS 308 (415)
Q Consensus 249 h~~~V~~l~~~~----~~l~sgs~dg~I~iwd~~~~~--~~~~~~~~h~~~V~~l~~spd---g-----------~~las 308 (415)
|...|++++|.| -.|++++.||.|.+.+.+... ........|...|++++|.|- | +.|++
T Consensus 101 h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvS 180 (299)
T KOG1332|consen 101 HSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVS 180 (299)
T ss_pred hcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeec
Confidence 999999999984 489999999999999988662 223556789999999999985 4 56999
Q ss_pred EeCCCcEEEEECCCC--ceeEEeccCCCcEEEEEEcCCC---CcEEEEEcCCCCCeEEEEECCCC--cEEEEe--eCCCC
Q 014934 309 GGNDNRLFVWNQHST--QPVLKYCEHTAAVKAIAWSPHL---HGLLASGGGTADRCIRFWNTTTN--THLSCM--DTGSQ 379 (415)
Q Consensus 309 g~~dg~I~iwd~~~~--~~~~~~~~h~~~V~~l~~sp~~---~~llasggg~~d~~I~iwd~~t~--~~~~~~--~~~~~ 379 (415)
|+.|+.|+||+..++ ....++++|...|+.++|+|.- +..+|+++ +||.+.||-.... +-..++ .....
T Consensus 181 gGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~S--qDg~viIwt~~~e~e~wk~tll~~f~~~ 258 (299)
T KOG1332|consen 181 GGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCS--QDGTVIIWTKDEEYEPWKKTLLEEFPDV 258 (299)
T ss_pred cCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEec--CCCcEEEEEecCccCcccccccccCCcc
Confidence 999999999999876 3345688999999999999974 34688888 9999999987632 111111 13567
Q ss_pred EEEEEECCCCCeEEEEEecCCCcEEEEECC
Q 014934 380 VCNLVWSKNVNELVSTHGYSQNQIIVWRYP 409 (415)
Q Consensus 380 V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~ 409 (415)
+..+.||..|+.|++ ++.|+.|.+|+-.
T Consensus 259 ~w~vSWS~sGn~LaV--s~GdNkvtlwke~ 286 (299)
T KOG1332|consen 259 VWRVSWSLSGNILAV--SGGDNKVTLWKEN 286 (299)
T ss_pred eEEEEEeccccEEEE--ecCCcEEEEEEeC
Confidence 999999999999999 5679999999854
No 69
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=1.5e-24 Score=187.07 Aligned_cols=199 Identities=21% Similarity=0.288 Sum_probs=181.2
Q ss_pred CCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCcc
Q 014934 206 GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDF 283 (415)
Q Consensus 206 ~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~ 283 (415)
.+.+.|..+.|+-+|+|.++++.|.+|++|+...+.+++++.+|...|..++.. +..|++|+.|+.|.+||+.+++ .
T Consensus 15 ~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGk-v 93 (307)
T KOG0316|consen 15 CAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGK-V 93 (307)
T ss_pred ccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCe-e
Confidence 668999999999999999999999999999999999999999999999998876 6799999999999999999998 6
Q ss_pred EEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCC--ceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEE
Q 014934 284 VSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHST--QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIR 361 (415)
Q Consensus 284 ~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~--~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~ 361 (415)
.+.+.+|.++|+.++|+.+...+++|+-|..+++||.++. +|++.+......|.++....+ .+++|+ .||++|
T Consensus 94 ~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~h---eIvaGS--~DGtvR 168 (307)
T KOG0316|consen 94 DRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEH---EIVAGS--VDGTVR 168 (307)
T ss_pred eeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEeccc---EEEeec--cCCcEE
Confidence 8999999999999999999999999999999999998764 789999889999999998854 666665 999999
Q ss_pred EEECCCCcEEEEeeCCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCCcc
Q 014934 362 FWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSK 413 (415)
Q Consensus 362 iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~~ 413 (415)
.||++.|...... .+.+|+++.|+++++.+++ |..|+.|++.|-.+++-
T Consensus 169 tydiR~G~l~sDy-~g~pit~vs~s~d~nc~La--~~l~stlrLlDk~tGkl 217 (307)
T KOG0316|consen 169 TYDIRKGTLSSDY-FGHPITSVSFSKDGNCSLA--SSLDSTLRLLDKETGKL 217 (307)
T ss_pred EEEeecceeehhh-cCCcceeEEecCCCCEEEE--eeccceeeecccchhHH
Confidence 9999999865433 6789999999999999998 78899999999888764
No 70
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.93 E-value=3.3e-24 Score=218.72 Aligned_cols=240 Identities=24% Similarity=0.402 Sum_probs=196.7
Q ss_pred CCcceeEeecCC-CcEEEEEc---CCeEEEEECCCC--------C--eEEeEec-CCCCCeEEEEEcCCCCeEEEEECCC
Q 014934 166 DDFYLNLVDWSS-HNVLAVGL---GNCVYLWNACSS--------K--VTKLCDL-GIDDSVCSVGWANRNTHLAVGTSHG 230 (415)
Q Consensus 166 ~~~~i~~l~ws~-~~~la~~~---d~~V~iwd~~~~--------~--~~~~~~~-~~~~~V~~v~~sp~g~~la~g~~dg 230 (415)
++..|-+++.+| +..+|+|. |+.+.||+.+.- . ...++.. .|.+.|+|+.|+|||++||+|+.|+
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~ 91 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDR 91 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcc
Confidence 344588999999 55566653 677889987431 0 1122222 7899999999999999999999999
Q ss_pred cEEEEECCC------------------CeeeEEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccc
Q 014934 231 KVQIWDASR------------------CKRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGH 290 (415)
Q Consensus 231 ~V~iwd~~~------------------~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h 290 (415)
.|.||+... .+.+..+.+|...|..++|+ +.+|++++.|++|.+||.++. ..+..+.+|
T Consensus 92 ~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF-~~~~vl~~H 170 (942)
T KOG0973|consen 92 LVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTF-ELLKVLRGH 170 (942)
T ss_pred eEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccc-eeeeeeecc
Confidence 999998762 24677889999999999999 579999999999999999999 579999999
Q ss_pred cCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCC-----------------------------------------------
Q 014934 291 KSEVCGLKWSYDNRELASGGNDNRLFVWNQHST----------------------------------------------- 323 (415)
Q Consensus 291 ~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~----------------------------------------------- 323 (415)
...|-++.|.|-|++||+-+.|++|+||++.+.
T Consensus 171 ~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~Ii 250 (942)
T KOG0973|consen 171 QSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAII 250 (942)
T ss_pred cccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEE
Confidence 999999999999999999999999999996431
Q ss_pred -----ceeEEeccCCCcEEEEEEcCC--------C-------Cc-EEEEEcCCCCCeEEEEECCCCcEEEEee--CCCCE
Q 014934 324 -----QPVLKYCEHTAAVKAIAWSPH--------L-------HG-LLASGGGTADRCIRFWNTTTNTHLSCMD--TGSQV 380 (415)
Q Consensus 324 -----~~~~~~~~h~~~V~~l~~sp~--------~-------~~-llasggg~~d~~I~iwd~~t~~~~~~~~--~~~~V 380 (415)
+.-..|-+|.+++.+++|+|. | .+ ++|+|+ .|++|.||++...+++..+. ....|
T Consensus 251 eR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgS--qDrSlSVW~T~~~RPl~vi~~lf~~SI 328 (942)
T KOG0973|consen 251 ERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGS--QDRSLSVWNTALPRPLFVIHNLFNKSI 328 (942)
T ss_pred ecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEec--CCccEEEEecCCCCchhhhhhhhcCce
Confidence 111224579999999999982 1 11 566666 99999999998888877765 46789
Q ss_pred EEEEECCCCCeEEEEEecCCCcEEEEECCC
Q 014934 381 CNLVWSKNVNELVSTHGYSQNQIIVWRYPT 410 (415)
Q Consensus 381 ~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s 410 (415)
..++|+|||..|++ .+.||+|.+..++.
T Consensus 329 ~DmsWspdG~~Lfa--cS~DGtV~~i~Fee 356 (942)
T KOG0973|consen 329 VDMSWSPDGFSLFA--CSLDGTVALIHFEE 356 (942)
T ss_pred eeeeEcCCCCeEEE--EecCCeEEEEEcch
Confidence 99999999999999 56899999999875
No 71
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=7.3e-25 Score=218.41 Aligned_cols=197 Identities=20% Similarity=0.343 Sum_probs=163.2
Q ss_pred CCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCC----------------------------------------------
Q 014934 206 GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASR---------------------------------------------- 239 (415)
Q Consensus 206 ~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~---------------------------------------------- 239 (415)
.|.+.|.++.|++||+|||+|+.||.|+||.+..
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 6889999999999999999999999999997643
Q ss_pred --------------CeeeEEecCCCccEEEEEee-CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeC-CC
Q 014934 240 --------------CKRVRTMEGHRLRVGALAWS-SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSY-DN 303 (415)
Q Consensus 240 --------------~~~~~~l~~h~~~V~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp-dg 303 (415)
.++++.+.||.+.|.+|.|+ .++|++++.|++|++|++.... ++..+ .|..-|+|++|+| |.
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~-CL~~F-~HndfVTcVaFnPvDD 422 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKE-CLKVF-SHNDFVTCVAFNPVDD 422 (712)
T ss_pred CccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcc-eeeEE-ecCCeeEEEEecccCC
Confidence 11233445899999999999 7899999999999999999776 56665 5999999999999 88
Q ss_pred CEEEEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee--------
Q 014934 304 RELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-------- 375 (415)
Q Consensus 304 ~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~-------- 375 (415)
++|++|+-|++|+||++...+.+.-. .-..-|++++|+|+|++.++ |+.+|.+++|++...+......
T Consensus 423 ryFiSGSLD~KvRiWsI~d~~Vv~W~-Dl~~lITAvcy~PdGk~avI---Gt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk 498 (712)
T KOG0283|consen 423 RYFISGSLDGKVRLWSISDKKVVDWN-DLRDLITAVCYSPDGKGAVI---GTFNGYCRFYDTEGLKLVSDFHIRLHNKKK 498 (712)
T ss_pred CcEeecccccceEEeecCcCeeEeeh-hhhhhheeEEeccCCceEEE---EEeccEEEEEEccCCeEEEeeeEeeccCcc
Confidence 99999999999999999888776555 44478999999999986666 4599999999999877665443
Q ss_pred -CCCCEEEEEECCCCC-eEEEEEecCCCcEEEEECCC
Q 014934 376 -TGSQVCNLVWSKNVN-ELVSTHGYSQNQIIVWRYPT 410 (415)
Q Consensus 376 -~~~~V~~l~~s~~~~-~l~s~~g~~dg~I~vw~~~s 410 (415)
.+..|++++|.|... .++++ +.|..|+|+|...
T Consensus 499 ~~~~rITG~Q~~p~~~~~vLVT--SnDSrIRI~d~~~ 533 (712)
T KOG0283|consen 499 KQGKRITGLQFFPGDPDEVLVT--SNDSRIRIYDGRD 533 (712)
T ss_pred ccCceeeeeEecCCCCCeEEEe--cCCCceEEEeccc
Confidence 123799999997654 34442 4799999999844
No 72
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.93 E-value=5.2e-24 Score=194.79 Aligned_cols=238 Identities=21% Similarity=0.364 Sum_probs=194.9
Q ss_pred CcceeEeecCCCcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCC---CeEEEEECCCcEEEEECCCCeee
Q 014934 167 DFYLNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRN---THLAVGTSHGKVQIWDASRCKRV 243 (415)
Q Consensus 167 ~~~i~~l~ws~~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g---~~la~g~~dg~V~iwd~~~~~~~ 243 (415)
|-.|..+.-.+.-+|..+.||.+++|+.. |+...... +|.+.|.+++|.-.. ..|++++.|.++++|..+.+..+
T Consensus 105 dDWVSsv~~~~~~IltgsYDg~~riWd~~-Gk~~~~~~-Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~ 182 (423)
T KOG0313|consen 105 DDWVSSVKGASKWILTGSYDGTSRIWDLK-GKSIKTIV-GHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENK 182 (423)
T ss_pred hhhhhhhcccCceEEEeecCCeeEEEecC-CceEEEEe-cCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhh
Confidence 33677777777778888899999999975 56556655 999999999996533 36999999999999998766432
Q ss_pred ----EEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCC------------------------CccEEEeccccCC
Q 014934 244 ----RTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQ------------------------EDFVSKLSGHKSE 293 (415)
Q Consensus 244 ----~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~------------------------~~~~~~~~~h~~~ 293 (415)
..-.||...|-++... +..+++|+.|.+|.+|+.... ..++..+.+|..+
T Consensus 183 ~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~ 262 (423)
T KOG0313|consen 183 VKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEP 262 (423)
T ss_pred hhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccc
Confidence 3334999999999987 689999999999999993221 0246678899999
Q ss_pred eEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCc--E-
Q 014934 294 VCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNT--H- 370 (415)
Q Consensus 294 V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~--~- 370 (415)
|.++.|++ ...+.+++.|.+|+.||+.++..+.++. -...+.++..+|..+ ||++|+ .|+.|++||.+++. .
T Consensus 263 Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~-~~ksl~~i~~~~~~~-Ll~~gs--sdr~irl~DPR~~~gs~v 337 (423)
T KOG0313|consen 263 VSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLT-TNKSLNCISYSPLSK-LLASGS--SDRHIRLWDPRTGDGSVV 337 (423)
T ss_pred eeeEEEcC-CCceEeecccceEEEEEeecccceeeee-cCcceeEeecccccc-eeeecC--CCCceeecCCCCCCCcee
Confidence 99999997 7789999999999999999999888874 456789999999765 888887 89999999998864 2
Q ss_pred -EEEeeCCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCCc
Q 014934 371 -LSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMS 412 (415)
Q Consensus 371 -~~~~~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~ 412 (415)
...+.|.+.|.++.|+|...+++++ |+.||++++||+.+-+
T Consensus 338 ~~s~~gH~nwVssvkwsp~~~~~~~S-~S~D~t~klWDvRS~k 379 (423)
T KOG0313|consen 338 SQSLIGHKNWVSSVKWSPTNEFQLVS-GSYDNTVKLWDVRSTK 379 (423)
T ss_pred EEeeecchhhhhheecCCCCceEEEE-EecCCeEEEEEeccCC
Confidence 2233577899999999998877765 7889999999998865
No 73
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.93 E-value=3.9e-24 Score=212.18 Aligned_cols=227 Identities=21% Similarity=0.284 Sum_probs=195.8
Q ss_pred CcEEEEEc-CCeEEEEECCCCCe-EEeEecC----CCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEe---cC
Q 014934 178 HNVLAVGL-GNCVYLWNACSSKV-TKLCDLG----IDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTM---EG 248 (415)
Q Consensus 178 ~~~la~~~-d~~V~iwd~~~~~~-~~~~~~~----~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l---~~ 248 (415)
.|++++.. +..++.|+...... ...+... ....+++|+.++.|++.++|+..|.|.+|++++|-....+ ..
T Consensus 412 ~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~a 491 (910)
T KOG1539|consen 412 DNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPA 491 (910)
T ss_pred cceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCcc
Confidence 47888875 46899999987654 2222211 2368999999999999999999999999999999888888 48
Q ss_pred CCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCcee
Q 014934 249 HRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPV 326 (415)
Q Consensus 249 h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~ 326 (415)
|.++|++++.+ +..+++++.+|.+.+||..... +...+. -...+.++..+.....+|.+..|-.|.++|..+.+.+
T Consensus 492 h~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~-l~~~l~-l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvv 569 (910)
T KOG1539|consen 492 HKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKV-LKKSLR-LGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVV 569 (910)
T ss_pred ccCceeEEEecCCCceEEEccCcceEEEEecCCcc-eeeeec-cCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhh
Confidence 99999999998 5789999999999999998776 444444 3457888889988899999999999999999999999
Q ss_pred EEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEEEEecCCCcEEEE
Q 014934 327 LKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVW 406 (415)
Q Consensus 327 ~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw 406 (415)
..|.+|.+.|++++|||+|++++.++ .|++|++||+.++.++..+....+..++.|+|+|.+|+++|- ..+-|++|
T Consensus 570 R~f~gh~nritd~~FS~DgrWlisas---mD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hv-d~~gIylW 645 (910)
T KOG1539|consen 570 REFWGHGNRITDMTFSPDGRWLISAS---MDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHV-DQNGIYLW 645 (910)
T ss_pred HHhhccccceeeeEeCCCCcEEEEee---cCCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEe-cCceEEEE
Confidence 99999999999999999999777765 799999999999999999999999999999999999999985 45789999
Q ss_pred ECCC
Q 014934 407 RYPT 410 (415)
Q Consensus 407 ~~~s 410 (415)
-=.+
T Consensus 646 sNks 649 (910)
T KOG1539|consen 646 SNKS 649 (910)
T ss_pred Echh
Confidence 7544
No 74
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=3.2e-25 Score=218.38 Aligned_cols=239 Identities=17% Similarity=0.322 Sum_probs=196.2
Q ss_pred ceeEeecCC--CcEEEEEc-CCeEEEEECCC---CCeEEeEecCCCCCeEEEEEcC-CCCeEEEEECCCcEEEEECCCCe
Q 014934 169 YLNLVDWSS--HNVLAVGL-GNCVYLWNACS---SKVTKLCDLGIDDSVCSVGWAN-RNTHLAVGTSHGKVQIWDASRCK 241 (415)
Q Consensus 169 ~i~~l~ws~--~~~la~~~-d~~V~iwd~~~---~~~~~~~~~~~~~~V~~v~~sp-~g~~la~g~~dg~V~iwd~~~~~ 241 (415)
.++-|.|+. .++||++. .|.|.+||+.. .+....+. .|...|.++.|++ ...+|++|+.||.|++||++..+
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~-EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~ 167 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFN-EHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKK 167 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhh-hhccceeeeeeccCCccEEEecCCCceEEEEeeeccc
Confidence 355678987 78888884 68999999977 33333443 8999999999998 45799999999999999999998
Q ss_pred eeEEecCCCccEEEEEee---CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEE
Q 014934 242 RVRTMEGHRLRVGALAWS---SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVW 318 (415)
Q Consensus 242 ~~~~l~~h~~~V~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iw 318 (415)
-..++.+....|.++.|+ +++|+++...|.+.+||+|....+...+.+|.++|.++.|+|++.+|||||.|+.|+||
T Consensus 168 S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiW 247 (839)
T KOG0269|consen 168 SKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIW 247 (839)
T ss_pred ccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEE
Confidence 888999999999999999 47999999999999999999998889999999999999999999999999999999999
Q ss_pred ECCCCce--eEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcE-EEEee-CCCCEEEEEECCCCCeEEE
Q 014934 319 NQHSTQP--VLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTH-LSCMD-TGSQVCNLVWSKNVNELVS 394 (415)
Q Consensus 319 d~~~~~~--~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~-~~~~~-~~~~V~~l~~s~~~~~l~s 394 (415)
|..+.+. +.++ ...++|..|+|-|...+.||+++--.|-.|+|||++..-. ...+. |...++.++|......++-
T Consensus 248 d~t~~~~~~~~tI-nTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~ 326 (839)
T KOG0269|consen 248 DMTDSRAKPKHTI-NTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLW 326 (839)
T ss_pred eccCCCccceeEE-eecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeE
Confidence 9986543 4444 3457899999999999999988644689999999986543 33443 6677888999774444333
Q ss_pred EEecCCCcEEEEECCC
Q 014934 395 THGYSQNQIIVWRYPT 410 (415)
Q Consensus 395 ~~g~~dg~I~vw~~~s 410 (415)
+ ++.|+.|..-.+.+
T Consensus 327 s-~sKD~tv~qh~~kn 341 (839)
T KOG0269|consen 327 S-CSKDGTVLQHLFKN 341 (839)
T ss_pred e-ecCccHHHHhhhhc
Confidence 3 67888876554443
No 75
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.93 E-value=4.7e-24 Score=209.46 Aligned_cols=238 Identities=18% Similarity=0.272 Sum_probs=207.2
Q ss_pred ceeEeecCC-CcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEec
Q 014934 169 YLNLVDWSS-HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTME 247 (415)
Q Consensus 169 ~i~~l~ws~-~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~ 247 (415)
.|..+++|. ..++++|.++.|+||+..+.++.+.+. .+.+.+..|.|.++++++|...|.+.+||+.+...+.+..
T Consensus 375 dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~---~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~ 451 (888)
T KOG0306|consen 375 DVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTIT---CGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIR 451 (888)
T ss_pred heeEEEeecCceeeeecCCCcEEEEEccCcceeEEec---cccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhh
Confidence 488999999 556666678999999999999998886 3489999999999999999999999999999999999999
Q ss_pred CCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCC-------ccEE----EeccccCCeEEEEEeCCCCEEEEEeCCCc
Q 014934 248 GHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQE-------DFVS----KLSGHKSEVCGLKWSYDNRELASGGNDNR 314 (415)
Q Consensus 248 ~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~-------~~~~----~~~~h~~~V~~l~~spdg~~lasg~~dg~ 314 (415)
+|.+.|+.++.. +..+++||.|.+|++||..-.. +.+. ..-.-...|.|+++||||++||++--|++
T Consensus 452 AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnT 531 (888)
T KOG0306|consen 452 AHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNT 531 (888)
T ss_pred ccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCe
Confidence 999999999997 5789999999999999975211 1010 11123467999999999999999999999
Q ss_pred EEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee-CCCCEEEEEECCCCCeEE
Q 014934 315 LFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKNVNELV 393 (415)
Q Consensus 315 I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~-~~~~V~~l~~s~~~~~l~ 393 (415)
|+||-+.+-+....+-+|.-+|.++..+|++. ++++|+ .|+.|++|-+.-|.|-..+- |...|.++.|.|....+.
T Consensus 532 VkVyflDtlKFflsLYGHkLPV~smDIS~DSk-livTgS--ADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FF 608 (888)
T KOG0306|consen 532 VKVYFLDTLKFFLSLYGHKLPVLSMDISPDSK-LIVTGS--ADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFF 608 (888)
T ss_pred EEEEEecceeeeeeecccccceeEEeccCCcC-eEEecc--CCCceEEeccccchhhhhhhcccCceeEEEEcccceeEE
Confidence 99999999999999999999999999999987 888988 89999999999999987764 778999999999888777
Q ss_pred EEEecCCCcEEEEECCCCccc
Q 014934 394 STHGYSQNQIIVWRYPTMSKV 414 (415)
Q Consensus 394 s~~g~~dg~I~vw~~~s~~~l 414 (415)
+ .+.|+.|+-||-...+.+
T Consensus 609 t--~gKD~kvKqWDg~kFe~i 627 (888)
T KOG0306|consen 609 T--CGKDGKVKQWDGEKFEEI 627 (888)
T ss_pred E--ecCcceEEeechhhhhhh
Confidence 7 569999999998776654
No 76
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.93 E-value=1.5e-24 Score=200.15 Aligned_cols=230 Identities=21% Similarity=0.348 Sum_probs=197.5
Q ss_pred ceeEeecCC--CcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEe
Q 014934 169 YLNLVDWSS--HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTM 246 (415)
Q Consensus 169 ~i~~l~ws~--~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l 246 (415)
.|+.+++.+ ..+||.+.|+.+++|+....+....+. +|.+.|+++.|......+++|+.|.+|++||+....+.+++
T Consensus 221 ~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLs-GHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~ 299 (459)
T KOG0288|consen 221 NITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLS-GHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTV 299 (459)
T ss_pred CcceeeecCCCceEEeecCCCceeeeeccchhhhhhhc-ccccceeeehhhccccceeeccccchhhhhhhhhhheeccc
Confidence 478889987 467888899999999999999888887 79999999999987777999999999999999998888776
Q ss_pred cCCCccEEEEEeeCCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCcee
Q 014934 247 EGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPV 326 (415)
Q Consensus 247 ~~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~ 326 (415)
. ....+.+|..++..+++|-.|+.|++||+++.. +......+. .|+++..+++|..|.+++.|..+.+.|+++....
T Consensus 300 l-~~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~-~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~ 376 (459)
T KOG0288|consen 300 L-PGSQCNDIVCSISDVISGHFDKKVRFWDIRSAD-KTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIR 376 (459)
T ss_pred c-ccccccceEecceeeeecccccceEEEeccCCc-eeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEE
Confidence 6 345677888888899999999999999999987 455555554 8999999999999999999999999999999887
Q ss_pred EEeccC----CCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeC---CCCEEEEEECCCCCeEEEEEecC
Q 014934 327 LKYCEH----TAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDT---GSQVCNLVWSKNVNELVSTHGYS 399 (415)
Q Consensus 327 ~~~~~h----~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~---~~~V~~l~~s~~~~~l~s~~g~~ 399 (415)
+.+... ....+.+.|||++. ++++|+ .||.|+||++.++++...+.. ...|+++.|+|.|..|++ .+.
T Consensus 377 ~~~sA~g~k~asDwtrvvfSpd~~-YvaAGS--~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Lls--adk 451 (459)
T KOG0288|consen 377 QTFSAEGFKCASDWTRVVFSPDGS-YVAAGS--ADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLS--ADK 451 (459)
T ss_pred EEeeccccccccccceeEECCCCc-eeeecc--CCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhc--ccC
Confidence 777532 23478899999998 555555 899999999999998877752 236999999999999999 668
Q ss_pred CCcEEEEE
Q 014934 400 QNQIIVWR 407 (415)
Q Consensus 400 dg~I~vw~ 407 (415)
++.+.+|.
T Consensus 452 ~~~v~lW~ 459 (459)
T KOG0288|consen 452 QKAVTLWT 459 (459)
T ss_pred CcceEecC
Confidence 89999993
No 77
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=2.1e-22 Score=172.78 Aligned_cols=250 Identities=19% Similarity=0.335 Sum_probs=197.0
Q ss_pred CCCCceeccCCCCCCCcceeEeecCC-CcEEEEEc-CCeEEEEEC--CCCCe----EEeEecCCCCCeEEEEEcCC----
Q 014934 152 PRSPYKILDAPALQDDFYLNLVDWSS-HNVLAVGL-GNCVYLWNA--CSSKV----TKLCDLGIDDSVCSVGWANR---- 219 (415)
Q Consensus 152 ~~~p~~~ld~~~l~~~~~i~~l~ws~-~~~la~~~-d~~V~iwd~--~~~~~----~~~~~~~~~~~V~~v~~sp~---- 219 (415)
++.|-.++-...-...-.|.|.+|+| +.+||+|+ |..|++... ++.+. +++. -|.+.|..++|-.+
T Consensus 74 ~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~n--mhdgtirdl~fld~~~s~ 151 (350)
T KOG0641|consen 74 AKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFN--MHDGTIRDLAFLDDPESG 151 (350)
T ss_pred ccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeee--ecCCceeeeEEecCCCcC
Confidence 34444444444444455788999999 99999995 677877544 33322 2222 57899999999753
Q ss_pred CCeEEEEE-CCCcEEEEECCCCeeeEEecCCCccEEEE-EeeCCEEEEEeCCCcEEEEECCCCCccEEEecc--c-----
Q 014934 220 NTHLAVGT-SHGKVQIWDASRCKRVRTMEGHRLRVGAL-AWSSSLLSSGSRDKSILQRDIRAQEDFVSKLSG--H----- 290 (415)
Q Consensus 220 g~~la~g~-~dg~V~iwd~~~~~~~~~l~~h~~~V~~l-~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~--h----- 290 (415)
|..|++++ .|..|.+-|..+++....+.+|.+-|.++ .|++-.+++|+.|.+|++||++-.. ++..+.. |
T Consensus 152 ~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv~~-~v~~l~~~~~~~gle 230 (350)
T KOG0641|consen 152 GAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNS-CVNTLDNDFHDGGLE 230 (350)
T ss_pred ceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEEEEecCcEEEccCCCceEEEEeeeccc-eeeeccCcccCCCcc
Confidence 45677654 36678888999999999999999999887 6899999999999999999999876 4554431 2
Q ss_pred cCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCc-
Q 014934 291 KSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNT- 369 (415)
Q Consensus 291 ~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~- 369 (415)
...|.+++..|.|++|++|-.|....+||++.+++++.|..|.+.|.++.|+|... .+.+++ .|..|++-|+...-
T Consensus 231 ssavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~-yllt~s--yd~~ikltdlqgdla 307 (350)
T KOG0641|consen 231 SSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAH-YLLTCS--YDMKIKLTDLQGDLA 307 (350)
T ss_pred cceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCce-EEEEec--ccceEEEeecccchh
Confidence 25699999999999999999999999999999999999999999999999999877 455555 89999999987421
Q ss_pred ----EEEEeeCCCCEEEEEECCCCCeEEEEEecCCCcEEEEECC
Q 014934 370 ----HLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYP 409 (415)
Q Consensus 370 ----~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~ 409 (415)
.+..-+|...+..+.|+|+.--+++ .+.|.+..+|-++
T Consensus 308 ~el~~~vv~ehkdk~i~~rwh~~d~sfis--ssadkt~tlwa~~ 349 (350)
T KOG0641|consen 308 HELPIMVVAEHKDKAIQCRWHPQDFSFIS--SSADKTATLWALN 349 (350)
T ss_pred hcCceEEEEeccCceEEEEecCccceeee--ccCcceEEEeccC
Confidence 1222247888999999999988888 5679999999875
No 78
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.92 E-value=5.6e-25 Score=203.01 Aligned_cols=248 Identities=20% Similarity=0.298 Sum_probs=204.6
Q ss_pred CCCCCCceeccCCCCCCCcceeEeecCCC-cEEEEE-cCCeEEEEECCCCCe--EEeEecCCCCCeEEEEEcCCCCeEEE
Q 014934 150 KVPRSPYKILDAPALQDDFYLNLVDWSSH-NVLAVG-LGNCVYLWNACSSKV--TKLCDLGIDDSVCSVGWANRNTHLAV 225 (415)
Q Consensus 150 ~i~~~p~~~ld~~~l~~~~~i~~l~ws~~-~~la~~-~d~~V~iwd~~~~~~--~~~~~~~~~~~V~~v~~sp~g~~la~ 225 (415)
.+|..-..++|++.- .++.+.|-++ ..|+.| .|..|++|+...++. ...+. +..+.|+++.|.++++++++
T Consensus 162 ~lpS~~~~~ld~h~g----ev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLa-Gs~g~it~~d~d~~~~~~iA 236 (459)
T KOG0288|consen 162 TLPSRALFVLDAHEG----EVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLA-GSLGNITSIDFDSDNKHVIA 236 (459)
T ss_pred ccchhhhhhhhcccc----ccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhh-ccCCCcceeeecCCCceEEe
Confidence 345555567777653 4788899884 666665 688999999987773 33332 56788999999999999999
Q ss_pred EECCCcEEEEECCCCeeeEEecCCCccEEEEEee-C-CEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCC
Q 014934 226 GTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWS-S-SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDN 303 (415)
Q Consensus 226 g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~-~-~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg 303 (415)
.+.|+.+++|++...+...++.+|+..|+++.|. . ..+++|+.|.+|++||+.... +...+. ....+..|..+ +
T Consensus 237 as~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~-C~kt~l-~~S~cnDI~~~--~ 312 (459)
T KOG0288|consen 237 ASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAY-CSKTVL-PGSQCNDIVCS--I 312 (459)
T ss_pred ecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhh-eecccc-ccccccceEec--c
Confidence 9999999999999999999999999999999997 3 349999999999999998865 343333 22345555555 5
Q ss_pred CEEEEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee-----CCC
Q 014934 304 RELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-----TGS 378 (415)
Q Consensus 304 ~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~-----~~~ 378 (415)
..+++|..|++|+.||+++..+......+. .|+++..++++..+++++ .|.++.+.|+++.+..+.+. ..+
T Consensus 313 ~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsss---RDdtl~viDlRt~eI~~~~sA~g~k~as 388 (459)
T KOG0288|consen 313 SDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSS---RDDTLKVIDLRTKEIRQTFSAEGFKCAS 388 (459)
T ss_pred eeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeec---CCCceeeeecccccEEEEeecccccccc
Confidence 678999999999999999999999886665 999999999999888774 79999999999988877764 456
Q ss_pred CEEEEEECCCCCeEEEEEecCCCcEEEEECCCCc
Q 014934 379 QVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMS 412 (415)
Q Consensus 379 ~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~ 412 (415)
..+.+.|||++.|+++ |+.||.|+||++.+++
T Consensus 389 DwtrvvfSpd~~YvaA--GS~dgsv~iW~v~tgK 420 (459)
T KOG0288|consen 389 DWTRVVFSPDGSYVAA--GSADGSVYIWSVFTGK 420 (459)
T ss_pred ccceeEECCCCceeee--ccCCCcEEEEEccCce
Confidence 7899999999999999 9999999999998765
No 79
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.92 E-value=3.6e-24 Score=200.11 Aligned_cols=192 Identities=26% Similarity=0.503 Sum_probs=166.7
Q ss_pred EeecCC---CcEEEEEcCCeEEEEECCCCCe-------EEeEecCCCCCeEEEEEcC-CCCeEEEEECCCcEEEEECC--
Q 014934 172 LVDWSS---HNVLAVGLGNCVYLWNACSSKV-------TKLCDLGIDDSVCSVGWAN-RNTHLAVGTSHGKVQIWDAS-- 238 (415)
Q Consensus 172 ~l~ws~---~~~la~~~d~~V~iwd~~~~~~-------~~~~~~~~~~~V~~v~~sp-~g~~la~g~~dg~V~iwd~~-- 238 (415)
.|.|++ +.+|+++.|+.|.+||+..... ...+. +|.+.|..++|++ +...+++++.|+.+.|||++
T Consensus 182 glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~-~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~ 260 (422)
T KOG0264|consen 182 GLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFS-GHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSN 260 (422)
T ss_pred ccccccccceeEeeccCCCcEEEEeccccccCCccccceEEee-cCCcceehhhccccchhhheeecCCCeEEEEEcCCC
Confidence 488998 5667777889999999875432 22232 8999999999999 55789999999999999999
Q ss_pred CCeeeEEecCCCccEEEEEeeC---CEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCC-CCEEEEEeCCCc
Q 014934 239 RCKRVRTMEGHRLRVGALAWSS---SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYD-NRELASGGNDNR 314 (415)
Q Consensus 239 ~~~~~~~l~~h~~~V~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd-g~~lasg~~dg~ 314 (415)
+.+......+|.+.|.|++|++ .+|++||.|++|.+||+|+...+++.+.+|..+|.++.|+|+ ...||+++.|+.
T Consensus 261 ~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~r 340 (422)
T KOG0264|consen 261 TSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRR 340 (422)
T ss_pred CCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCc
Confidence 5667778889999999999994 799999999999999999999899999999999999999995 567899999999
Q ss_pred EEEEECCCC--------------ceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECC
Q 014934 315 LFVWNQHST--------------QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTT 366 (415)
Q Consensus 315 I~iwd~~~~--------------~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~ 366 (415)
+.|||+..- ++++.-.+|++.|..+.|+|...++++|.. .|+.+.||.+.
T Consensus 341 l~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~Sva--eDN~LqIW~~s 404 (422)
T KOG0264|consen 341 LNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVA--EDNILQIWQMA 404 (422)
T ss_pred EEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEec--CCceEEEeecc
Confidence 999998631 345666799999999999999999999998 99999999986
No 80
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.92 E-value=3.8e-25 Score=198.39 Aligned_cols=203 Identities=18% Similarity=0.313 Sum_probs=174.8
Q ss_pred EeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEec--------CCCccEEEEEee--CCEEEEEeCCC
Q 014934 201 KLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTME--------GHRLRVGALAWS--SSLLSSGSRDK 270 (415)
Q Consensus 201 ~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~--------~h~~~V~~l~~~--~~~l~sgs~dg 270 (415)
+.+.++..+.+-|..|+|||++|++|+.||.|.+|+..+|+....++ .+..+|.|+.|+ ...|++|+.||
T Consensus 206 r~IKFg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDG 285 (508)
T KOG0275|consen 206 RSIKFGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDG 285 (508)
T ss_pred hheecccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCC
Confidence 44556778889999999999999999999999999999987665543 467899999998 57999999999
Q ss_pred cEEEEECCCCCccEEEec-cccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEE
Q 014934 271 SILQRDIRAQEDFVSKLS-GHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLL 349 (415)
Q Consensus 271 ~I~iwd~~~~~~~~~~~~-~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll 349 (415)
.|++|.++++. +++.+. +|...|+++.|+.|+..+++++.|.+++|.-+++|+++..|.+|...|+...|.++|++++
T Consensus 286 kIKvWri~tG~-ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~ii 364 (508)
T KOG0275|consen 286 KIKVWRIETGQ-CLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHII 364 (508)
T ss_pred cEEEEEEecch-HHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEE
Confidence 99999999998 455555 9999999999999999999999999999999999999999999999999999999999666
Q ss_pred EEEcCCCCCeEEEEECCCCcEEEEee---CCCCEEEEEECCCCC-eEEEEEecCCCcEEEEECC
Q 014934 350 ASGGGTADRCIRFWNTTTNTHLSCMD---TGSQVCNLVWSKNVN-ELVSTHGYSQNQIIVWRYP 409 (415)
Q Consensus 350 asggg~~d~~I~iwd~~t~~~~~~~~---~~~~V~~l~~s~~~~-~l~s~~g~~dg~I~vw~~~ 409 (415)
.++ .||+|++|+..+++|+.+++ +...|.++..-|.+. .+++ ....++|.|.++.
T Consensus 365 saS---sDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iV--CNrsntv~imn~q 423 (508)
T KOG0275|consen 365 SAS---SDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIV--CNRSNTVYIMNMQ 423 (508)
T ss_pred Eec---CCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEE--EcCCCeEEEEecc
Confidence 655 69999999999999999887 445688887777553 4455 3466788887764
No 81
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.92 E-value=1.1e-22 Score=178.43 Aligned_cols=237 Identities=15% Similarity=0.246 Sum_probs=196.0
Q ss_pred CcceeEeecCC-CcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeE
Q 014934 167 DFYLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVR 244 (415)
Q Consensus 167 ~~~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~ 244 (415)
+..++-+.++. +.+|..+ -|..+.+|-..+|+..-.+. +|.+.|.|+...-+.+++++|+.|.+++|||+++|+++.
T Consensus 10 ERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~-GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la 88 (327)
T KOG0643|consen 10 ERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYD-GHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLA 88 (327)
T ss_pred ccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeec-CCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEE
Confidence 44577888887 6665555 68899999998999888887 999999999999999999999999999999999999999
Q ss_pred EecCCCccEEEEEee--CCEEEEEeC-----CCcEEEEECCCC------CccEEEeccccCCeEEEEEeCCCCEEEEEeC
Q 014934 245 TMEGHRLRVGALAWS--SSLLSSGSR-----DKSILQRDIRAQ------EDFVSKLSGHKSEVCGLKWSYDNRELASGGN 311 (415)
Q Consensus 245 ~l~~h~~~V~~l~~~--~~~l~sgs~-----dg~I~iwd~~~~------~~~~~~~~~h~~~V~~l~~spdg~~lasg~~ 311 (415)
.++ ...+|..+.|+ +++++.... .+.|.++|++.. +.+...+..+...++.+-|.|-++.|++|..
T Consensus 89 ~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe 167 (327)
T KOG0643|consen 89 TWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHE 167 (327)
T ss_pred Eee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecC
Confidence 888 56779999998 455555443 357999999842 2356777888899999999999999999999
Q ss_pred CCcEEEEECCCCc-eeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee---------------
Q 014934 312 DNRLFVWNQHSTQ-PVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD--------------- 375 (415)
Q Consensus 312 dg~I~iwd~~~~~-~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~--------------- 375 (415)
||.|.+||+++++ .+...+.|...|+.+.++++.. .+++++ .|.+-++||+.+-++++++.
T Consensus 168 ~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T-~FiT~s--~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d 244 (327)
T KOG0643|consen 168 DGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRT-YFITGS--KDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLD 244 (327)
T ss_pred CCcEEEEEcccCceeeechhhhccccccccccCCcc-eEEecc--cCccceeeeccceeeEEEeeecccccceecccccc
Confidence 9999999999985 4555578999999999999987 666666 89999999998755444321
Q ss_pred -----------------------------------------CCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCC
Q 014934 376 -----------------------------------------TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPT 410 (415)
Q Consensus 376 -----------------------------------------~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s 410 (415)
|-++|++++|+|+|+-.++ |++||.|++.-+.+
T Consensus 245 ~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsS--GGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 245 HVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSS--GGEDGYVRLHHFDS 318 (327)
T ss_pred eEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCccccc--CCCCceEEEEEecc
Confidence 2256789999999998888 88999999887653
No 82
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=1.5e-24 Score=197.34 Aligned_cols=235 Identities=18% Similarity=0.315 Sum_probs=185.4
Q ss_pred eeEeecCCCc--EEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEEC---------
Q 014934 170 LNLVDWSSHN--VLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDA--------- 237 (415)
Q Consensus 170 i~~l~ws~~~--~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~--------- 237 (415)
|.|++=+|+. .+|+| .||.|+|||+...++...+. .|.+.|..|++.. ..+++++.|.+|+.|-+
T Consensus 69 V~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~-AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~p~~til 145 (433)
T KOG0268|consen 69 VSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFK-AHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGPPLHTIL 145 (433)
T ss_pred cchhhcCcchhhhhhccccCceEEEEehhhhhhhheee-cccCceeeEEecc--cceEEecCCcceeeeeccCCcceeee
Confidence 6788888833 44444 69999999999988888887 8889999999986 55677777877777753
Q ss_pred -----------------------------CCCeeeEEecCCCccEEEEEeeC---CEEEEEeCCCcEEEEECCCCCccEE
Q 014934 238 -----------------------------SRCKRVRTMEGHRLRVGALAWSS---SLLSSGSRDKSILQRDIRAQEDFVS 285 (415)
Q Consensus 238 -----------------------------~~~~~~~~l~~h~~~V~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~ 285 (415)
....++..+.-....|.++.|++ .+|++|+.|+.|.+||+|.... ++
T Consensus 146 g~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~P-l~ 224 (433)
T KOG0268|consen 146 GKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASP-LK 224 (433)
T ss_pred ccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCc-cc
Confidence 22223344444445677777774 6899999999999999999874 33
Q ss_pred EeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCC-ceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEE
Q 014934 286 KLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHST-QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWN 364 (415)
Q Consensus 286 ~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~-~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd 364 (415)
.+. -...-+.|+|+|.+-.|++|++|..++.||++.- +++..+.+|..+|.+++|+|.|. -+++|+ .|++|+||.
T Consensus 225 KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~-Efvsgs--yDksIRIf~ 300 (433)
T KOG0268|consen 225 KVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQ-EFVSGS--YDKSIRIFP 300 (433)
T ss_pred eee-eeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcc-hhcccc--ccceEEEee
Confidence 322 2345678999998888999999999999999874 67888889999999999999998 566666 999999999
Q ss_pred CCCCcEEEEeeC--CCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCCccc
Q 014934 365 TTTNTHLSCMDT--GSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKV 414 (415)
Q Consensus 365 ~~t~~~~~~~~~--~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~~l 414 (415)
+..+.....+.+ -..|.++.||.|.+++++ |++|+.|++|+....+++
T Consensus 301 ~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~S--GSdd~nvRlWka~Asekl 350 (433)
T KOG0268|consen 301 VNHGHSRDIYHTKRMQHVFCVKYSMDSKYIIS--GSDDGNVRLWKAKASEKL 350 (433)
T ss_pred cCCCcchhhhhHhhhheeeEEEEeccccEEEe--cCCCcceeeeecchhhhc
Confidence 998865444433 356999999999999999 999999999998765543
No 83
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.92 E-value=2.4e-24 Score=187.20 Aligned_cols=217 Identities=19% Similarity=0.285 Sum_probs=186.8
Q ss_pred cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCe-eeEEecCCCccEEEEEee--CC
Q 014934 185 LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCK-RVRTMEGHRLRVGALAWS--SS 261 (415)
Q Consensus 185 ~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~-~~~~l~~h~~~V~~l~~~--~~ 261 (415)
.|-+-++||+-+|.....+ .|.-.|.+++|+.|.++|++|+.+..++|||++..+ +...+.+|.+.|..+.|. .+
T Consensus 79 adftakvw~a~tgdelhsf--~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~ 156 (334)
T KOG0278|consen 79 ADFTAKVWDAVTGDELHSF--EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDK 156 (334)
T ss_pred ccchhhhhhhhhhhhhhhh--hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCc
Confidence 4668999999999876665 688899999999999999999999999999998754 556788999999999998 57
Q ss_pred EEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEE
Q 014934 262 LLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAW 341 (415)
Q Consensus 262 ~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~ 341 (415)
.+++.+.|++|++||.+++.. ++.+. ...+|.++..+++|++|.++. .+.|..||..+-.++..++ -...|.+..+
T Consensus 157 ~iLSSadd~tVRLWD~rTgt~-v~sL~-~~s~VtSlEvs~dG~ilTia~-gssV~Fwdaksf~~lKs~k-~P~nV~SASL 232 (334)
T KOG0278|consen 157 CILSSADDKTVRLWDHRTGTE-VQSLE-FNSPVTSLEVSQDGRILTIAY-GSSVKFWDAKSFGLLKSYK-MPCNVESASL 232 (334)
T ss_pred eEEeeccCCceEEEEeccCcE-EEEEe-cCCCCcceeeccCCCEEEEec-CceeEEeccccccceeecc-Cccccccccc
Confidence 888889999999999999984 55544 456899999999999876654 4679999999998888774 4567899999
Q ss_pred cCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEe--eCCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCCc
Q 014934 342 SPHLHGLLASGGGTADRCIRFWNTTTNTHLSCM--DTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMS 412 (415)
Q Consensus 342 sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~--~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~ 412 (415)
+|+. .++++|| +|..++.||..+|+.+..+ .|.++|.++.|+|+|...++ |+.||+|++|.....+
T Consensus 233 ~P~k-~~fVaGg--ed~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAs--GSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 233 HPKK-EFFVAGG--EDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYAS--GSEDGTIRLWQTTPGK 300 (334)
T ss_pred cCCC-ceEEecC--cceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeec--cCCCceEEEEEecCCC
Confidence 9997 5888887 9999999999999998875 37789999999999998888 9999999999986543
No 84
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1.8e-23 Score=195.88 Aligned_cols=220 Identities=18% Similarity=0.299 Sum_probs=188.8
Q ss_pred ceeEeecCC-CcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECC--------
Q 014934 169 YLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDAS-------- 238 (415)
Q Consensus 169 ~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~-------- 238 (415)
.++++.-+| +.+|++| -.+.||+|.+.+|.+..++. .|-..|+|+.|+-||.+|++|+.||.|.+|++.
T Consensus 83 ~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~-aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~ 161 (476)
T KOG0646|consen 83 PVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLS-AHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADND 161 (476)
T ss_pred ceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHH-hhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccC
Confidence 478888888 8888888 68999999999999988885 889999999999999999999999999999873
Q ss_pred -CCeeeEEecCCCccEEEEEee----CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCC
Q 014934 239 -RCKRVRTMEGHRLRVGALAWS----SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDN 313 (415)
Q Consensus 239 -~~~~~~~l~~h~~~V~~l~~~----~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg 313 (415)
+-+.++.+..|.-+|+++... ...|+++|.|.+|++||+..+. .+..+ .....+.+++.+|-++.+..|+.+|
T Consensus 162 ~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~-LLlti-~fp~si~av~lDpae~~~yiGt~~G 239 (476)
T KOG0646|consen 162 HSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGV-LLLTI-TFPSSIKAVALDPAERVVYIGTEEG 239 (476)
T ss_pred CCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccce-eeEEE-ecCCcceeEEEcccccEEEecCCcc
Confidence 346778899999999999987 2589999999999999999886 34333 3457899999999999999999999
Q ss_pred cEEEEECCCC----------------ceeEEeccCCC--cEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee
Q 014934 314 RLFVWNQHST----------------QPVLKYCEHTA--AVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD 375 (415)
Q Consensus 314 ~I~iwd~~~~----------------~~~~~~~~h~~--~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~ 375 (415)
.|.+.++... ..+..+.+|.+ +|+|++.+-||. +|++|+ .||.++|||+.+.++++++.
T Consensus 240 ~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dgt-lLlSGd--~dg~VcvWdi~S~Q~iRtl~ 316 (476)
T KOG0646|consen 240 KIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGT-LLLSGD--EDGKVCVWDIYSKQCIRTLQ 316 (476)
T ss_pred eEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCcc-EEEeeC--CCCCEEEEecchHHHHHHHh
Confidence 9999887532 23456678988 999999999997 999987 99999999999999999887
Q ss_pred -CCCCEEEEEECCCCCeEEE
Q 014934 376 -TGSQVCNLVWSKNVNELVS 394 (415)
Q Consensus 376 -~~~~V~~l~~s~~~~~l~s 394 (415)
..++|+.+.+.|-.+..+.
T Consensus 317 ~~kgpVtnL~i~~~~~~~~l 336 (476)
T KOG0646|consen 317 TSKGPVTNLQINPLERGIIL 336 (476)
T ss_pred hhccccceeEeeccccceec
Confidence 6789999999776544443
No 85
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=3.4e-24 Score=211.15 Aligned_cols=237 Identities=19% Similarity=0.347 Sum_probs=187.3
Q ss_pred eeEeecCC-CcEEEEEcCCeEEEEECCCCCeEE--eEecCC----CCCeEEEEEcC-CCCeEEEEECCCcEEEEECCC--
Q 014934 170 LNLVDWSS-HNVLAVGLGNCVYLWNACSSKVTK--LCDLGI----DDSVCSVGWAN-RNTHLAVGTSHGKVQIWDASR-- 239 (415)
Q Consensus 170 i~~l~ws~-~~~la~~~d~~V~iwd~~~~~~~~--~~~~~~----~~~V~~v~~sp-~g~~la~g~~dg~V~iwd~~~-- 239 (415)
.+.|.-.+ .+-|+++....+.||.+....... ....+. .-.+..|.|.. +.++||+++..|.|.+||+..
T Consensus 42 ~nAIs~nr~~~qiv~AGrs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~ 121 (839)
T KOG0269|consen 42 ANAISVNRDINQIVVAGRSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNKSI 121 (839)
T ss_pred cceEeecCCcceeEEecccceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCccc
Confidence 45566666 344555545556666554432211 111111 12356688885 568999999999999999977
Q ss_pred -CeeeEEecCCCccEEEEEee---CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeC-CCCEEEEEeCCCc
Q 014934 240 -CKRVRTMEGHRLRVGALAWS---SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSY-DNRELASGGNDNR 314 (415)
Q Consensus 240 -~~~~~~l~~h~~~V~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~lasg~~dg~ 314 (415)
.+.+..|..|...+.++.|+ +++|++|++||+|++||+|... ....+.+....|..++|+| .+..|+++...|.
T Consensus 122 rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~-S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~ 200 (839)
T KOG0269|consen 122 RNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKK-SKSTFRSNSESIRDVKFSPGYGNKFASIHDSGY 200 (839)
T ss_pred cchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccc-ccccccccchhhhceeeccCCCceEEEecCCce
Confidence 56777889999999999998 7999999999999999999887 4667777888999999998 6788999999999
Q ss_pred EEEEECCCC-ceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCc--EEEEeeCCCCEEEEEECCCCCe
Q 014934 315 LFVWNQHST-QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNT--HLSCMDTGSQVCNLVWSKNVNE 391 (415)
Q Consensus 315 I~iwd~~~~-~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~--~~~~~~~~~~V~~l~~s~~~~~ 391 (415)
|.+||++.. ++..++..|.+.|.++.|+|++ .+||+|| .|+.|+|||+.+++ .+.++.+..+|..+.|-|...+
T Consensus 201 lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr-~~lATGG--RDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~ 277 (839)
T KOG0269|consen 201 LQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNR-EWLATGG--RDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSY 277 (839)
T ss_pred EEEeeccCchhHHHHhhcccCceEEEeecCCC-ceeeecC--CCccEEEEeccCCCccceeEEeecceeeeeeeccCccc
Confidence 999999865 6677888999999999999965 5999997 99999999998654 5778889999999999998776
Q ss_pred EE-EEEecCCCcEEEEECCC
Q 014934 392 LV-STHGYSQNQIIVWRYPT 410 (415)
Q Consensus 392 l~-s~~g~~dg~I~vw~~~s 410 (415)
.+ +++-..|-.|+|||+..
T Consensus 278 hLAtcsmv~dtsV~VWDvrR 297 (839)
T KOG0269|consen 278 HLATCSMVVDTSVHVWDVRR 297 (839)
T ss_pred hhhhhhccccceEEEEeecc
Confidence 54 43334578999999853
No 86
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=3e-23 Score=194.01 Aligned_cols=235 Identities=22% Similarity=0.352 Sum_probs=200.2
Q ss_pred ceeEeecCC--CcEEEEEcCCeEEEEECCCCCeE-EeEe----------------cCCCCCeEEEEEcCCCCeEEEEECC
Q 014934 169 YLNLVDWSS--HNVLAVGLGNCVYLWNACSSKVT-KLCD----------------LGIDDSVCSVGWANRNTHLAVGTSH 229 (415)
Q Consensus 169 ~i~~l~ws~--~~~la~~~d~~V~iwd~~~~~~~-~~~~----------------~~~~~~V~~v~~sp~g~~la~g~~d 229 (415)
.+.++..++ ...+.++.+++|.-|++.+++.. .+.. ..|...+.+++.++||++||+|+.|
T Consensus 144 s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~d 223 (479)
T KOG0299|consen 144 SVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGGRD 223 (479)
T ss_pred cceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEecCCC
Confidence 477888888 35666667899999999887643 1111 1567789999999999999999999
Q ss_pred CcEEEEECCCCeeeEEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEE
Q 014934 230 GKVQIWDASRCKRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELA 307 (415)
Q Consensus 230 g~V~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 307 (415)
..|+||+.++.+.+..+.+|.+.|.+++|- .+.|++++.|+.|++|++.... .+.++.+|...|.+|....-++.+-
T Consensus 224 ~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s-~vetlyGHqd~v~~IdaL~reR~vt 302 (479)
T KOG0299|consen 224 RHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLS-YVETLYGHQDGVLGIDALSRERCVT 302 (479)
T ss_pred ceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhH-HHHHHhCCccceeeechhcccceEE
Confidence 999999999999999999999999999998 5899999999999999999887 6888999999999999888888877
Q ss_pred EEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee--C---------
Q 014934 308 SGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD--T--------- 376 (415)
Q Consensus 308 sg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~--~--------- 376 (415)
+|+.|.++++|++.... ...|.+|.+.+-|++|-.+. -+++|+ .+|.|.+|++.+.+++.... |
T Consensus 303 VGgrDrT~rlwKi~ees-qlifrg~~~sidcv~~In~~--HfvsGS--dnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~ 377 (479)
T KOG0299|consen 303 VGGRDRTVRLWKIPEES-QLIFRGGEGSIDCVAFINDE--HFVSGS--DNGSIALWSLLKKKPLFTSRLAHGVIPELDPV 377 (479)
T ss_pred eccccceeEEEeccccc-eeeeeCCCCCeeeEEEeccc--ceeecc--CCceEEEeeecccCceeEeeccccccCCcccc
Confidence 88899999999995443 34566899999999999775 466766 89999999999988877653 2
Q ss_pred --CCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCC
Q 014934 377 --GSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTM 411 (415)
Q Consensus 377 --~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~ 411 (415)
...|++++..+..+.+++ |+.+|.|++|.+..+
T Consensus 378 ~~~~Witsla~i~~sdL~as--GS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 378 NGNFWITSLAVIPGSDLLAS--GSWSGCVRLWKIEDG 412 (479)
T ss_pred ccccceeeeEecccCceEEe--cCCCCceEEEEecCC
Confidence 126899999999999988 888999999999876
No 87
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=6.3e-24 Score=205.73 Aligned_cols=228 Identities=21% Similarity=0.324 Sum_probs=196.0
Q ss_pred Cc-EEEEEcCCeEEEEECCCCCe------EEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCC--eeeEEecC
Q 014934 178 HN-VLAVGLGNCVYLWNACSSKV------TKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRC--KRVRTMEG 248 (415)
Q Consensus 178 ~~-~la~~~d~~V~iwd~~~~~~------~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~--~~~~~l~~ 248 (415)
++ ++.+|.|+.|++|+.....- ...++ .|.+.|..+....+|+.|++++.|-+|++|+...+ -++.++..
T Consensus 37 ~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme-~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~ 115 (735)
T KOG0308|consen 37 GRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASME-HHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRT 115 (735)
T ss_pred CceEEecCCCceEEEeccccccCCcccchhhhhh-hhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhc
Confidence 55 55666899999999765332 22222 67899999999999999999999999999999877 57888899
Q ss_pred CCccEEEEEee---CCEEEEEeCCCcEEEEECCCCCc---------cEEEec-cccCCeEEEEEeCCCCEEEEEeCCCcE
Q 014934 249 HRLRVGALAWS---SSLLSSGSRDKSILQRDIRAQED---------FVSKLS-GHKSEVCGLKWSYDNRELASGGNDNRL 315 (415)
Q Consensus 249 h~~~V~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~---------~~~~~~-~h~~~V~~l~~spdg~~lasg~~dg~I 315 (415)
|...|.|++.- ...+++||-|+.|.+||+.++.. ....+. ++...|.+++.++.|..|++|+..+.|
T Consensus 116 H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~l 195 (735)
T KOG0308|consen 116 HKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDL 195 (735)
T ss_pred ccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccce
Confidence 99999999993 57899999999999999997631 122233 788999999999999999999999999
Q ss_pred EEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee-CCCCEEEEEECCCCCeEEE
Q 014934 316 FVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKNVNELVS 394 (415)
Q Consensus 316 ~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~-~~~~V~~l~~s~~~~~l~s 394 (415)
++||.++++.+.++.+|+..|+++..+++|..+|.++ .||+|++||+...+++.++. |...|+++..+++-..+.+
T Consensus 196 r~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~s---SDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYs 272 (735)
T KOG0308|consen 196 RLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSAS---SDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYS 272 (735)
T ss_pred EEeccccccceeeeeccccceEEEEEcCCCCeEeecC---CCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEe
Confidence 9999999999999999999999999999998666644 69999999999999998876 6667999999999999999
Q ss_pred EEecCCCcEEEEECCCC
Q 014934 395 THGYSQNQIIVWRYPTM 411 (415)
Q Consensus 395 ~~g~~dg~I~vw~~~s~ 411 (415)
|+.|+.|..=|+.+.
T Consensus 273 --G~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 273 --GGRDGNIYRTDLRNP 287 (735)
T ss_pred --cCCCCcEEecccCCc
Confidence 899999998888764
No 88
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.92 E-value=2.4e-23 Score=196.93 Aligned_cols=242 Identities=21% Similarity=0.374 Sum_probs=190.3
Q ss_pred CcceeEeecCC--CcEEEEEcCCeEEEEECCCCCeEEeEe-----------cCCCCCeEEEEEcCCC-CeEEEEECCCcE
Q 014934 167 DFYLNLVDWSS--HNVLAVGLGNCVYLWNACSSKVTKLCD-----------LGIDDSVCSVGWANRN-THLAVGTSHGKV 232 (415)
Q Consensus 167 ~~~i~~l~ws~--~~~la~~~d~~V~iwd~~~~~~~~~~~-----------~~~~~~V~~v~~sp~g-~~la~g~~dg~V 232 (415)
.-.++++.|++ +.+|+++.....+|+|-...++.+.+. .+|...++|.+|+|+. ..+++++.||++
T Consensus 214 ~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~Dgtl 293 (641)
T KOG0772|consen 214 THQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTL 293 (641)
T ss_pred ccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcE
Confidence 33588999999 557777777889999987666655442 2788899999999965 578999999999
Q ss_pred EEEECCCCee-eEEec-----CCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCC--ccEEEeccccC--CeEEEEEe
Q 014934 233 QIWDASRCKR-VRTME-----GHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQE--DFVSKLSGHKS--EVCGLKWS 300 (415)
Q Consensus 233 ~iwd~~~~~~-~~~l~-----~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~--~~~~~~~~h~~--~V~~l~~s 300 (415)
+|||+...+. ...++ +..-.++.++|+ +..|++|+.||.|.+||.+... .....-.+|.. .|+||+||
T Consensus 294 RiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS 373 (641)
T KOG0772|consen 294 RIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFS 373 (641)
T ss_pred EEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEec
Confidence 9999976542 22222 344578899999 5789999999999999986543 12334457776 99999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCC-ceeEEeccC--CCcEEEEEEcCCCCcEEEEEc----CCCCCeEEEEECCCCcEEEE
Q 014934 301 YDNRELASGGNDNRLFVWNQHST-QPVLKYCEH--TAAVKAIAWSPHLHGLLASGG----GTADRCIRFWNTTTNTHLSC 373 (415)
Q Consensus 301 pdg~~lasg~~dg~I~iwd~~~~-~~~~~~~~h--~~~V~~l~~sp~~~~llasgg----g~~d~~I~iwd~~t~~~~~~ 373 (415)
+||++|++-+.|+.++|||+++. +++....+- ..+-+.++|+|+.+ |+++|. |...+.+.|||..+-+.++.
T Consensus 374 ~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~k-li~TGtS~~~~~~~g~L~f~d~~t~d~v~k 452 (641)
T KOG0772|consen 374 YDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDK-LILTGTSAPNGMTAGTLFFFDRMTLDTVYK 452 (641)
T ss_pred cccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCce-EEEecccccCCCCCceEEEEeccceeeEEE
Confidence 99999999999999999999875 455555442 33457899999987 777764 23467899999999999999
Q ss_pred ee-CCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCC
Q 014934 374 MD-TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTM 411 (415)
Q Consensus 374 ~~-~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~ 411 (415)
+. ....|..+.|+|.-+.|.+ |..||.++||==++.
T Consensus 453 i~i~~aSvv~~~WhpkLNQi~~--gsgdG~~~vyYdp~~ 489 (641)
T KOG0772|consen 453 IDISTASVVRCLWHPKLNQIFA--GSGDGTAHVYYDPNE 489 (641)
T ss_pred ecCCCceEEEEeecchhhheee--ecCCCceEEEECccc
Confidence 87 4677999999999999998 677999998865543
No 89
>PTZ00420 coronin; Provisional
Probab=99.92 E-value=1.9e-22 Score=203.49 Aligned_cols=183 Identities=19% Similarity=0.331 Sum_probs=150.6
Q ss_pred EECCCcEEEEECCCCeeeEEecCCCccEEEEEeeC---CEEEEEeCCCcEEEEECCCCC-------ccEEEeccccCCeE
Q 014934 226 GTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWSS---SLLSSGSRDKSILQRDIRAQE-------DFVSKLSGHKSEVC 295 (415)
Q Consensus 226 g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~~---~~l~sgs~dg~I~iwd~~~~~-------~~~~~~~~h~~~V~ 295 (415)
|+.+|.|++|+......+..+.+|.+.|.+++|++ ++|++|+.||+|++||+.... .++..+.+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 56788999999988788889999999999999984 699999999999999998642 13446788999999
Q ss_pred EEEEeCCCCE-EEEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEe
Q 014934 296 GLKWSYDNRE-LASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCM 374 (415)
Q Consensus 296 ~l~~spdg~~-lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~ 374 (415)
+++|+|++.. ||+|+.|+.|+|||+++++.+..+. |...|.+++|+|+|. +|++++ .|+.|+|||+++++.+..+
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~-lLat~s--~D~~IrIwD~Rsg~~i~tl 205 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGN-LLSGTC--VGKHMHIIDPRKQEIASSF 205 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCC-EEEEEe--cCCEEEEEECCCCcEEEEE
Confidence 9999998875 5789999999999999998887774 667899999999998 666665 7999999999999998877
Q ss_pred e-CCCCE-----EEEEECCCCCeEEEEEecCC---CcEEEEECCCCcc
Q 014934 375 D-TGSQV-----CNLVWSKNVNELVSTHGYSQ---NQIIVWRYPTMSK 413 (415)
Q Consensus 375 ~-~~~~V-----~~l~~s~~~~~l~s~~g~~d---g~I~vw~~~s~~~ 413 (415)
. |...+ ....|++++.+|+++ |.++ ++|+|||+..+.+
T Consensus 206 ~gH~g~~~s~~v~~~~fs~d~~~IlTt-G~d~~~~R~VkLWDlr~~~~ 252 (568)
T PTZ00420 206 HIHDGGKNTKNIWIDGLGGDDNYILST-GFSKNNMREMKLWDLKNTTS 252 (568)
T ss_pred ecccCCceeEEEEeeeEcCCCCEEEEE-EcCCCCccEEEEEECCCCCC
Confidence 6 33332 223456898988885 4433 4799999986543
No 90
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=6.7e-25 Score=214.60 Aligned_cols=224 Identities=26% Similarity=0.438 Sum_probs=195.1
Q ss_pred ceeEeecCC-CcEEEEEc-CCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEe
Q 014934 169 YLNLVDWSS-HNVLAVGL-GNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTM 246 (415)
Q Consensus 169 ~i~~l~ws~-~~~la~~~-d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l 246 (415)
+++++..-. .++++.|. +..+-+|.+..-.....+. +|..+|.||.|+++..+|+.|+.+|+|++||++..+.++++
T Consensus 30 av~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~-~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtL 108 (825)
T KOG0267|consen 30 AVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLT-GHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTL 108 (825)
T ss_pred hhceeeeeccceeeccCCCceeeccccccCCchhheee-ccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhh
Confidence 455555422 56666664 5567799876554444443 89999999999999999999999999999999999999999
Q ss_pred cCCCccEEEEEeeC--CEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCc
Q 014934 247 EGHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQ 324 (415)
Q Consensus 247 ~~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~ 324 (415)
.+|...+..+.|+| .++++|+.|+.+++||++... +.+.+.+|...|..+.|+|+|+++++|+.|+.++|||+..|+
T Consensus 109 tgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~G-c~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk 187 (825)
T KOG0267|consen 109 TGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKG-CSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGK 187 (825)
T ss_pred hccccCcceeeeccceEEeccccccccceehhhhccC-ceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccc
Confidence 99999999999995 788999999999999999776 688999999999999999999999999999999999999999
Q ss_pred eeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeC-CCCEEEEEECCCCCeEEEEEecC
Q 014934 325 PVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDT-GSQVCNLVWSKNVNELVSTHGYS 399 (415)
Q Consensus 325 ~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~-~~~V~~l~~s~~~~~l~s~~g~~ 399 (415)
.+..|..|...|..+.|+|.. .|+++|| .|++++|||+++-+.+...+. -..|.++.|++++..+++ |..
T Consensus 188 ~~~ef~~~e~~v~sle~hp~e-~Lla~Gs--~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~--G~q 258 (825)
T KOG0267|consen 188 LSKEFKSHEGKVQSLEFHPLE-VLLAPGS--SDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLS--GEQ 258 (825)
T ss_pred cccccccccccccccccCchh-hhhccCC--CCceeeeeccceeEEeeccCCccCCceeeeecCCceeeec--Cch
Confidence 999999999999999999985 5888887 999999999999888877663 467999999999998887 643
No 91
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.91 E-value=7.2e-23 Score=201.18 Aligned_cols=235 Identities=20% Similarity=0.326 Sum_probs=205.3
Q ss_pred ceeEeecCC-CcEEEEEc-CCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCC-----C-
Q 014934 169 YLNLVDWSS-HNVLAVGL-GNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASR-----C- 240 (415)
Q Consensus 169 ~i~~l~ws~-~~~la~~~-d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~-----~- 240 (415)
|+-+..|-| +++++.|. .|.+.+||+.+........ .|.+.+.+++.+||++.+++|+.|.+|++||..- +
T Consensus 414 y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~-AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt 492 (888)
T KOG0306|consen 414 YILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIR-AHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGT 492 (888)
T ss_pred cEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhh-ccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcc
Confidence 778888888 66677774 6899999999999888887 8999999999999999999999999999999631 1
Q ss_pred -eeeEEec-----CCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCC
Q 014934 241 -KRVRTME-----GHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGND 312 (415)
Q Consensus 241 -~~~~~l~-----~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~d 312 (415)
+.+..+. .-...|.|+.++ +.+|+++--|.++++|-+.+.. ....+.||.-+|.|+..+||+++++||+.|
T Consensus 493 ~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlK-FflsLYGHkLPV~smDIS~DSklivTgSAD 571 (888)
T KOG0306|consen 493 QKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLK-FFLSLYGHKLPVLSMDISPDSKLIVTGSAD 571 (888)
T ss_pred cceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEeccee-eeeeecccccceeEEeccCCcCeEEeccCC
Confidence 1111111 135679999999 5899999999999999998886 677889999999999999999999999999
Q ss_pred CcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee-CCCCEEEEEECCCCCe
Q 014934 313 NRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKNVNE 391 (415)
Q Consensus 313 g~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~-~~~~V~~l~~s~~~~~ 391 (415)
..|+||-+.=|.+-..+-+|...|.++.|.|..+ ++.++| .|+.|+-||-..-++++.++ |...|++++.+|+|.+
T Consensus 572 KnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~-~FFt~g--KD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~ 648 (888)
T KOG0306|consen 572 KNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTH-LFFTCG--KDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSF 648 (888)
T ss_pred CceEEeccccchhhhhhhcccCceeEEEEcccce-eEEEec--CcceEEeechhhhhhheeeccchheeeeeEEcCCCCe
Confidence 9999999999999999999999999999999765 666776 89999999999999998887 7789999999999999
Q ss_pred EEEEEecCCCcEEEEECCC
Q 014934 392 LVSTHGYSQNQIIVWRYPT 410 (415)
Q Consensus 392 l~s~~g~~dg~I~vw~~~s 410 (415)
+++ ++.|..|++|.-..
T Consensus 649 vvs--~shD~sIRlwE~td 665 (888)
T KOG0306|consen 649 VVS--SSHDKSIRLWERTD 665 (888)
T ss_pred EEe--ccCCceeEeeeccC
Confidence 999 77899999998654
No 92
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.91 E-value=1.6e-22 Score=189.27 Aligned_cols=231 Identities=20% Similarity=0.361 Sum_probs=195.4
Q ss_pred ceeEeecCC-CcEEEEEc-CCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEe
Q 014934 169 YLNLVDWSS-HNVLAVGL-GNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTM 246 (415)
Q Consensus 169 ~i~~l~ws~-~~~la~~~-d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l 246 (415)
-+-+++.|+ +.+||+|. |..|.||+..+.+.++.+. +|.+.|.+++|-.....|.+++.|+.|++|+++....+.++
T Consensus 204 eil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~-ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetl 282 (479)
T KOG0299|consen 204 EILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFK-GHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETL 282 (479)
T ss_pred eeEEEEEcCCCcEEEecCCCceEEEecCcccchhhccc-ccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHH
Confidence 367888888 88999984 6788999999999888876 99999999999988889999999999999999999999999
Q ss_pred cCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCc
Q 014934 247 EGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQ 324 (415)
Q Consensus 247 ~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~ 324 (415)
.+|+..|.+|... ...+.+|+.|+++++|++.... ...+.+|.+.+.|++|- +...|++|+.||.|.+|++...+
T Consensus 283 yGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ees--qlifrg~~~sidcv~~I-n~~HfvsGSdnG~IaLWs~~KKk 359 (479)
T KOG0299|consen 283 YGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEES--QLIFRGGEGSIDCVAFI-NDEHFVSGSDNGSIALWSLLKKK 359 (479)
T ss_pred hCCccceeeechhcccceEEeccccceeEEEeccccc--eeeeeCCCCCeeeEEEe-cccceeeccCCceEEEeeecccC
Confidence 9999999999876 5677778899999999995443 56678899999999997 56689999999999999999999
Q ss_pred eeEEec-cC-----------CCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCC----cEEEEeeCCCCEEEEEECCC
Q 014934 325 PVLKYC-EH-----------TAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTN----THLSCMDTGSQVCNLVWSKN 388 (415)
Q Consensus 325 ~~~~~~-~h-----------~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~----~~~~~~~~~~~V~~l~~s~~ 388 (415)
+++... .| ...|++|+..|... |+++|+ .+|+|++|-+..| .++..+...+.|++++|+++
T Consensus 360 plf~~~~AHgv~~~~~~~~~~~Witsla~i~~sd-L~asGS--~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~s 436 (479)
T KOG0299|consen 360 PLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSD-LLASGS--WSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNS 436 (479)
T ss_pred ceeEeeccccccCCccccccccceeeeEecccCc-eEEecC--CCCceEEEEecCCccccceeeecccccEEEEEEEccC
Confidence 887764 12 22789999999865 999988 8999999999887 45666667788999999999
Q ss_pred CCeEEEEEecCCCcEEEEE
Q 014934 389 VNELVSTHGYSQNQIIVWR 407 (415)
Q Consensus 389 ~~~l~s~~g~~dg~I~vw~ 407 (415)
|+.++++.| ....+--|.
T Consensus 437 gk~ivagiG-kEhRlGRW~ 454 (479)
T KOG0299|consen 437 GKRIVAGIG-KEHRLGRWW 454 (479)
T ss_pred CCEEEEecc-cccccceee
Confidence 998888654 333443443
No 93
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=4.5e-23 Score=184.71 Aligned_cols=233 Identities=21% Similarity=0.324 Sum_probs=200.1
Q ss_pred eeEeecCC-CcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEEC------CC--
Q 014934 170 LNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDA------SR-- 239 (415)
Q Consensus 170 i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~------~~-- 239 (415)
|..++-.. ..++.++ .|.+.+||.++++.+...+. +|.+.|.+|+|++.+.++++++.|++..||.. ..
T Consensus 151 iW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~-GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~ 229 (481)
T KOG0300|consen 151 IWHVAADSTQPICGTASADHTARIWSLESGACLATYT-GHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNN 229 (481)
T ss_pred eeeehhhcCCcceeecccccceeEEeeccccceeeec-ccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCC
Confidence 44444444 5566665 57899999999999988887 99999999999999999999999999999951 00
Q ss_pred --------------------------------CeeeEEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEE
Q 014934 240 --------------------------------CKRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVS 285 (415)
Q Consensus 240 --------------------------------~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~ 285 (415)
.-++..+.+|.+.|.+..|- +..+++++.|++..+||+++++ ++.
T Consensus 230 a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge-~v~ 308 (481)
T KOG0300|consen 230 APSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGE-VVN 308 (481)
T ss_pred CCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCc-eec
Confidence 01344567899999999996 7899999999999999999998 789
Q ss_pred EeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCC-ceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEE
Q 014934 286 KLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHST-QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWN 364 (415)
Q Consensus 286 ~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~-~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd 364 (415)
.+.+|..+.+.++-+|..+++++.+.|-+.++||.+.. ..+..|++|+..|+++.|.-+.+ +++|+ .|.+|++||
T Consensus 309 ~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~--vVSgS--DDrTvKvWd 384 (481)
T KOG0300|consen 309 ILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDR--VVSGS--DDRTVKVWD 384 (481)
T ss_pred cccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCc--eeecC--CCceEEEee
Confidence 99999999999999999999999999999999999854 55778999999999999998864 56665 899999999
Q ss_pred CCCC-cEEEEeeCCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCC
Q 014934 365 TTTN-THLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPT 410 (415)
Q Consensus 365 ~~t~-~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s 410 (415)
+++. .++.++.+.+++..++.+..+..++. --++.+|++||+.-
T Consensus 385 LrNMRsplATIRtdS~~NRvavs~g~~iIAi--PhDNRqvRlfDlnG 429 (481)
T KOG0300|consen 385 LRNMRSPLATIRTDSPANRVAVSKGHPIIAI--PHDNRQVRLFDLNG 429 (481)
T ss_pred eccccCcceeeecCCccceeEeecCCceEEe--ccCCceEEEEecCC
Confidence 9875 57889999999999999999998888 45678999999864
No 94
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.91 E-value=1.9e-22 Score=176.47 Aligned_cols=238 Identities=22% Similarity=0.343 Sum_probs=201.8
Q ss_pred ceeEeecCC-CcEEEEE-cCCeEEEEECCCCCeEEeEec-CCCCCeEEEEEcC-CCCeEEEEECCCcEEEEECCCCeeeE
Q 014934 169 YLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDL-GIDDSVCSVGWAN-RNTHLAVGTSHGKVQIWDASRCKRVR 244 (415)
Q Consensus 169 ~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~~-~~~~~V~~v~~sp-~g~~la~g~~dg~V~iwd~~~~~~~~ 244 (415)
.+..|+|+. +..||.| .|+++.+|++...+....... +|.+.|-.++|+| ....+++++.|.+|++||+.+++++.
T Consensus 22 ~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~ 101 (313)
T KOG1407|consen 22 KVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTA 101 (313)
T ss_pred cceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEE
Confidence 377899998 7788887 589999999987754333322 7888999999998 56799999999999999999999998
Q ss_pred EecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCC
Q 014934 245 TMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHS 322 (415)
Q Consensus 245 ~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~ 322 (415)
......+.+. +.|+ +.+++.+++|..|...|.++.. +..-.....++.-++|+-++.+|+.-...|.|.|.....
T Consensus 102 ~i~~~~eni~-i~wsp~g~~~~~~~kdD~it~id~r~~~--~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsyps 178 (313)
T KOG1407|consen 102 RIETKGENIN-ITWSPDGEYIAVGNKDDRITFIDARTYK--IVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPS 178 (313)
T ss_pred EeeccCcceE-EEEcCCCCEEEEecCcccEEEEEecccc--eeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccc
Confidence 8876656565 4555 6899999999999999999876 222333556788899998888888777789999999999
Q ss_pred CceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee-CCCCEEEEEECCCCCeEEEEEecCCC
Q 014934 323 TQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKNVNELVSTHGYSQN 401 (415)
Q Consensus 323 ~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~-~~~~V~~l~~s~~~~~l~s~~g~~dg 401 (415)
-++++.++.|.....||.|+|+|+ .+|+|+ .|..+.+||+..--++..+. ..-+|..+.|+.+|++|++ |++|.
T Consensus 179 Lkpv~si~AH~snCicI~f~p~Gr-yfA~Gs--ADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lAS--aSEDh 253 (313)
T KOG1407|consen 179 LKPVQSIKAHPSNCICIEFDPDGR-YFATGS--ADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLAS--ASEDH 253 (313)
T ss_pred cccccccccCCcceEEEEECCCCc-eEeecc--ccceeeccChhHhhhheeeccccCceEEEEeccCcceeec--cCccc
Confidence 999999999999999999999998 777877 89999999999888888885 6788999999999999999 88999
Q ss_pred cEEEEECCCCccc
Q 014934 402 QIIVWRYPTMSKV 414 (415)
Q Consensus 402 ~I~vw~~~s~~~l 414 (415)
-|-|=+++++.++
T Consensus 254 ~IDIA~vetGd~~ 266 (313)
T KOG1407|consen 254 FIDIAEVETGDRV 266 (313)
T ss_pred eEEeEecccCCeE
Confidence 9998888888764
No 95
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.91 E-value=7.9e-23 Score=193.40 Aligned_cols=261 Identities=16% Similarity=0.257 Sum_probs=192.7
Q ss_pred CCCCCCCCCceeccCCCCCCCcceeEeecCC-C-cEEEEEcCCeEEEEECCCCCe----EEeEecCCCCCeEEEEEcCCC
Q 014934 147 APRKVPRSPYKILDAPALQDDFYLNLVDWSS-H-NVLAVGLGNCVYLWNACSSKV----TKLCDLGIDDSVCSVGWANRN 220 (415)
Q Consensus 147 ~~r~i~~~p~~~ld~~~l~~~~~i~~l~ws~-~-~~la~~~d~~V~iwd~~~~~~----~~~~~~~~~~~V~~v~~sp~g 220 (415)
....||...+-.|... .-.|..+++.| + +++..+.|..|++||...-.. .+.+.......|.++.|++.|
T Consensus 151 ~~~~IP~shEi~l~hg----tk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg 226 (641)
T KOG0772|consen 151 IIKLIPGSHEIQLKHG----TKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTG 226 (641)
T ss_pred hhhcCCccceEeccCC----ceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCC
Confidence 3556777776665432 33588899988 4 455555799999999875321 222222335689999999999
Q ss_pred CeEEEEECCCcEEEEECCCCeeeEEe------------cCCCccEEEEEeeC---CEEEEEeCCCcEEEEECCCCCccEE
Q 014934 221 THLAVGTSHGKVQIWDASRCKRVRTM------------EGHRLRVGALAWSS---SLLSSGSRDKSILQRDIRAQEDFVS 285 (415)
Q Consensus 221 ~~la~g~~dg~V~iwd~~~~~~~~~l------------~~h~~~V~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~ 285 (415)
..|++.+.....+|+|-.-...+... +||...++|.+|+| +.|++++.||++++||+........
T Consensus 227 ~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~q 306 (641)
T KOG0772|consen 227 DQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQ 306 (641)
T ss_pred CeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhhee
Confidence 99988888889999997544333322 48999999999995 6899999999999999987664444
Q ss_pred Eec-----cccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCC--ceeEEe-ccCCC--cEEEEEEcCCCCcEEEEEcCC
Q 014934 286 KLS-----GHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHST--QPVLKY-CEHTA--AVKAIAWSPHLHGLLASGGGT 355 (415)
Q Consensus 286 ~~~-----~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~--~~~~~~-~~h~~--~V~~l~~sp~~~~llasggg~ 355 (415)
.+. +..-.++.++|++||++||+|+.||.|.+|+..+. .+...+ ..|.. .|++|.|+++|++|+ +-|
T Consensus 307 Vik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~Ll-SRg-- 383 (641)
T KOG0772|consen 307 VIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLL-SRG-- 383 (641)
T ss_pred EEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhh-hcc--
Confidence 433 33457899999999999999999999999997543 233332 46877 899999999998555 444
Q ss_pred CCCeEEEEECCCCc-EEEEee---CCCCEEEEEECCCCCeEEEEEe----cCCCcEEEEECCCCccc
Q 014934 356 ADRCIRFWNTTTNT-HLSCMD---TGSQVCNLVWSKNVNELVSTHG----YSQNQIIVWRYPTMSKV 414 (415)
Q Consensus 356 ~d~~I~iwd~~t~~-~~~~~~---~~~~V~~l~~s~~~~~l~s~~g----~~dg~I~vw~~~s~~~l 414 (415)
.|+++++||++..+ ++.... +...-+.++|||+.+.|++.+. ...|.+.+||-.+++.+
T Consensus 384 ~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v 450 (641)
T KOG0772|consen 384 FDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTV 450 (641)
T ss_pred CCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeE
Confidence 79999999998754 343322 3455678999999999998321 12467999988776543
No 96
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=6.2e-23 Score=191.21 Aligned_cols=231 Identities=20% Similarity=0.382 Sum_probs=187.0
Q ss_pred CcEEEEEc-CCeEEEEECCCCC-eEEeE-------------------ecCCCCCeEEEEEcCC-CCeEEEEECCCcEEEE
Q 014934 178 HNVLAVGL-GNCVYLWNACSSK-VTKLC-------------------DLGIDDSVCSVGWANR-NTHLAVGTSHGKVQIW 235 (415)
Q Consensus 178 ~~~la~~~-d~~V~iwd~~~~~-~~~~~-------------------~~~~~~~V~~v~~sp~-g~~la~g~~dg~V~iw 235 (415)
+|++|+|. +..|.|||+.--. +...+ ..+|++.|.++.|+.. .+.||+|+.|.+|.+|
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW 271 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLW 271 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEE
Confidence 68999994 8899999985311 11111 1157888999999875 4689999999999999
Q ss_pred ECCCCeeeEEecCCCccEEEEEee---CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCC-CCEEEEEeC
Q 014934 236 DASRCKRVRTMEGHRLRVGALAWS---SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYD-NRELASGGN 311 (415)
Q Consensus 236 d~~~~~~~~~l~~h~~~V~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd-g~~lasg~~ 311 (415)
|+.++++..++..|...|.++.|+ +.+|++|+.|+++.+.|.|.....-..+ ...+.|-.++|.|. ...++++..
T Consensus 272 D~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~w-k~~g~VEkv~w~~~se~~f~~~td 350 (463)
T KOG0270|consen 272 DVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEW-KFDGEVEKVAWDPHSENSFFVSTD 350 (463)
T ss_pred EcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceE-EeccceEEEEecCCCceeEEEecC
Confidence 999999999999999999999999 6899999999999999999654322233 24578999999985 456788889
Q ss_pred CCcEEEEECCCC-ceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeC---CCCEEEEEECC
Q 014934 312 DNRLFVWNQHST-QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDT---GSQVCNLVWSK 387 (415)
Q Consensus 312 dg~I~iwd~~~~-~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~---~~~V~~l~~s~ 387 (415)
||+|+-+|+++. +++.++..|.+.|.+|++++...+++++++ .|+.+++|++..........+ -+..++.++.|
T Consensus 351 dG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s--~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~ 428 (463)
T KOG0270|consen 351 DGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTAS--TDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDP 428 (463)
T ss_pred CceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeecc--ccceEEEEeecCCCCcccccccccccceeecccCC
Confidence 999999999976 999999999999999999999999999987 899999999975443222211 23477888899
Q ss_pred CCCeEEEEEecCCCcEEEEECCCCc
Q 014934 388 NVNELVSTHGYSQNQIIVWRYPTMS 412 (415)
Q Consensus 388 ~~~~l~s~~g~~dg~I~vw~~~s~~ 412 (415)
+-..+++. |+..+.++|||+-+..
T Consensus 429 ~~a~~la~-GG~k~~~~vwd~~~~~ 452 (463)
T KOG0270|consen 429 DVAFTLAF-GGEKAVLRVWDIFTNS 452 (463)
T ss_pred CcceEEEe-cCccceEEEeecccCh
Confidence 88777665 6677899999997654
No 97
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.91 E-value=9.5e-24 Score=183.50 Aligned_cols=238 Identities=18% Similarity=0.278 Sum_probs=213.6
Q ss_pred cceeEeecCC----CcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCee
Q 014934 168 FYLNLVDWSS----HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKR 242 (415)
Q Consensus 168 ~~i~~l~ws~----~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~ 242 (415)
..|..++||| +.+|..+ .|+.-.+-+-++|..+-.+. +|.+.|.+.....+..+.|+++.|=+.++||.-++..
T Consensus 15 rpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfe-ghkgavw~~~l~~na~~aasaaadftakvw~a~tgde 93 (334)
T KOG0278|consen 15 RPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFE-GHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDE 93 (334)
T ss_pred cceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeee-ccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhh
Confidence 3466777877 3444444 58888899999999999997 9999999999999999999999999999999999999
Q ss_pred eEEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEEC
Q 014934 243 VRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQ 320 (415)
Q Consensus 243 ~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~ 320 (415)
+..+. |..-|.+++|+ .++|++|+.++.++++|+...+.+...+.+|.+.|..+-|....+.|++...|+.|++||.
T Consensus 94 lhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~ 172 (334)
T KOG0278|consen 94 LHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDH 172 (334)
T ss_pred hhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEe
Confidence 99887 88999999998 5899999999999999999988788889999999999999999999999999999999999
Q ss_pred CCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEEEEecCC
Q 014934 321 HSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQ 400 (415)
Q Consensus 321 ~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~d 400 (415)
+++..++++ .....|+++..+++|+ ++.++ ..+.|.+||..+-..++.++....|.+...+|+...+++ |+.|
T Consensus 173 rTgt~v~sL-~~~s~VtSlEvs~dG~-ilTia---~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVa--Gged 245 (334)
T KOG0278|consen 173 RTGTEVQSL-EFNSPVTSLEVSQDGR-ILTIA---YGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVA--GGED 245 (334)
T ss_pred ccCcEEEEE-ecCCCCcceeeccCCC-EEEEe---cCceeEEeccccccceeeccCccccccccccCCCceEEe--cCcc
Confidence 999999998 4567899999999998 55554 468999999999999999999999999999999988888 8999
Q ss_pred CcEEEEECCCCccc
Q 014934 401 NQIIVWRYPTMSKV 414 (415)
Q Consensus 401 g~I~vw~~~s~~~l 414 (415)
..++.|||.+++++
T Consensus 246 ~~~~kfDy~TgeEi 259 (334)
T KOG0278|consen 246 FKVYKFDYNTGEEI 259 (334)
T ss_pred eEEEEEeccCCcee
Confidence 99999999998765
No 98
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.91 E-value=5.4e-23 Score=200.80 Aligned_cols=228 Identities=20% Similarity=0.325 Sum_probs=189.1
Q ss_pred CcEEEEEcCCeEEEEECCCCCeEEeE------------------------------------ecCCCCCeEEEEEcCCCC
Q 014934 178 HNVLAVGLGNCVYLWNACSSKVTKLC------------------------------------DLGIDDSVCSVGWANRNT 221 (415)
Q Consensus 178 ~~~la~~~d~~V~iwd~~~~~~~~~~------------------------------------~~~~~~~V~~v~~sp~g~ 221 (415)
+-++++++|++|++|++..+.-..++ ..+....+.+++.+|+|+
T Consensus 393 ~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gq 472 (1080)
T KOG1408|consen 393 GCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQ 472 (1080)
T ss_pred cceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcc
Confidence 45777789999999998762111110 012345799999999999
Q ss_pred eEEEEECCCcEEEEECCCCeeeEEecCCCccEEEEEee-----CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEE
Q 014934 222 HLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWS-----SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCG 296 (415)
Q Consensus 222 ~la~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~-----~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~ 296 (415)
+||+|..-|.++|||+...+....++.|...|.|+.++ ..+|+++++|+.|.++|+...-.++.++.+|...|++
T Consensus 473 hLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITs 552 (1080)
T KOG1408|consen 473 HLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITS 552 (1080)
T ss_pred eecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeE
Confidence 99999999999999999999899999999999999998 2689999999999999997665556666666666665
Q ss_pred EEE-------------------------------------------------eCCCCEEEEEeCCCcEEEEECCCCceeE
Q 014934 297 LKW-------------------------------------------------SYDNRELASGGNDNRLFVWNQHSTQPVL 327 (415)
Q Consensus 297 l~~-------------------------------------------------spdg~~lasg~~dg~I~iwd~~~~~~~~ 327 (415)
++| .|..+++++++.|..|+|||+.+++...
T Consensus 553 vKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k 632 (1080)
T KOG1408|consen 553 VKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVK 632 (1080)
T ss_pred EEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceee
Confidence 554 4445688999999999999999999999
Q ss_pred Eecc---CCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee-CCCCEEEEEECCCCCeEEEEEecCCCcE
Q 014934 328 KYCE---HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKNVNELVSTHGYSQNQI 403 (415)
Q Consensus 328 ~~~~---h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~-~~~~V~~l~~s~~~~~l~s~~g~~dg~I 403 (415)
.|++ |.+....+...|.|-++..++ .|+++.|+|..+|+++.... |...|+++.|.+|-+.|++. +.||.|
T Consensus 633 ~FKgs~~~eG~lIKv~lDPSgiY~atSc---sdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISv--sgDgCI 707 (1080)
T KOG1408|consen 633 SFKGSRDHEGDLIKVILDPSGIYLATSC---SDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISV--SGDGCI 707 (1080)
T ss_pred eecccccCCCceEEEEECCCccEEEEee---cCCceEEEEeccchhhhhhcCcchheeeeeecccchhheee--cCCceE
Confidence 8874 677888899999998666666 59999999999999987764 66779999999999999995 569999
Q ss_pred EEEECCC
Q 014934 404 IVWRYPT 410 (415)
Q Consensus 404 ~vw~~~s 410 (415)
.||+++.
T Consensus 708 FvW~lp~ 714 (1080)
T KOG1408|consen 708 FVWKLPL 714 (1080)
T ss_pred EEEECch
Confidence 9999985
No 99
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=2.9e-21 Score=165.81 Aligned_cols=239 Identities=20% Similarity=0.276 Sum_probs=191.5
Q ss_pred CCCCcceeEeecCC-CcEEEEEcC-CeEEEEEC------CCCC-----e-EEeE--ecCCCCCeEEEEEcCCCCeEEEEE
Q 014934 164 LQDDFYLNLVDWSS-HNVLAVGLG-NCVYLWNA------CSSK-----V-TKLC--DLGIDDSVCSVGWANRNTHLAVGT 227 (415)
Q Consensus 164 l~~~~~i~~l~ws~-~~~la~~~d-~~V~iwd~------~~~~-----~-~~~~--~~~~~~~V~~v~~sp~g~~la~g~ 227 (415)
+.|...|..++|+| +.+.|+|++ .+.+|.-. ..+. . ..++ ...|.+.|.|++|+|+|.+||+|+
T Consensus 29 l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgs 108 (350)
T KOG0641|consen 29 LEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGS 108 (350)
T ss_pred ecchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecC
Confidence 45666799999999 889999975 45555422 1111 0 1111 226789999999999999999999
Q ss_pred CCCcEEEEECCCCe-----eeEEecCCCccEEEEEee------CCEEEEEe-CCCcEEEEECCCCCccEEEeccccCCeE
Q 014934 228 SHGKVQIWDASRCK-----RVRTMEGHRLRVGALAWS------SSLLSSGS-RDKSILQRDIRAQEDFVSKLSGHKSEVC 295 (415)
Q Consensus 228 ~dg~V~iwd~~~~~-----~~~~l~~h~~~V~~l~~~------~~~l~sgs-~dg~I~iwd~~~~~~~~~~~~~h~~~V~ 295 (415)
.|.+|++.-..... .-..+..|.+.|..++|- +.+|++++ .|..|++-|...+. ..+.+.+|.+.|.
T Consensus 109 ndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~-~~~a~sghtghil 187 (350)
T KOG0641|consen 109 NDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQ-GFHALSGHTGHIL 187 (350)
T ss_pred CCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCC-cceeecCCcccEE
Confidence 99999997664322 223567799999999995 35666654 57788888998887 5788999999998
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEecc-------CCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCC
Q 014934 296 GLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCE-------HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTN 368 (415)
Q Consensus 296 ~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~~-------h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~ 368 (415)
++- +=+|-+|++|+.|.+|+.||++-..++..+.. ...+|.+++..|.|+ ||++|. .|....+||++.+
T Consensus 188 aly-swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgr-ll~sg~--~dssc~lydirg~ 263 (350)
T KOG0641|consen 188 ALY-SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGR-LLASGH--ADSSCMLYDIRGG 263 (350)
T ss_pred EEE-EecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcc-eeeecc--CCCceEEEEeeCC
Confidence 873 33688999999999999999998888777642 236799999999997 999987 8999999999999
Q ss_pred cEEEEee-CCCCEEEEEECCCCCeEEEEEecCCCcEEEEECC
Q 014934 369 THLSCMD-TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYP 409 (415)
Q Consensus 369 ~~~~~~~-~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~ 409 (415)
..++.+. |...|.++.|+|...+|++ ++-|..|++-|+.
T Consensus 264 r~iq~f~phsadir~vrfsp~a~yllt--~syd~~ikltdlq 303 (350)
T KOG0641|consen 264 RMIQRFHPHSADIRCVRFSPGAHYLLT--CSYDMKIKLTDLQ 303 (350)
T ss_pred ceeeeeCCCccceeEEEeCCCceEEEE--ecccceEEEeecc
Confidence 9999986 6788999999999999999 7789999998875
No 100
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.90 E-value=5.7e-23 Score=183.61 Aligned_cols=236 Identities=18% Similarity=0.295 Sum_probs=193.1
Q ss_pred ceeEeecCC-CcEEEEE-cCCeEEEEECCCCCeEEeEec-CCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEE
Q 014934 169 YLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDL-GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRT 245 (415)
Q Consensus 169 ~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~~-~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~ 245 (415)
.|++++|+| ..+|+.| .|++|+++|.......+.+.. .....|.++.|+|.|.+|++|+...++++||+.+.++...
T Consensus 174 evn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvs 253 (430)
T KOG0640|consen 174 EVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVS 253 (430)
T ss_pred cccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeee
Confidence 489999999 7788877 589999999876544333322 4467899999999999999999999999999999887665
Q ss_pred e---cCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEe-cccc-CCeEEEEEeCCCCEEEEEeCCCcEEEE
Q 014934 246 M---EGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKL-SGHK-SEVCGLKWSYDNRELASGGNDNRLFVW 318 (415)
Q Consensus 246 l---~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~-~~h~-~~V~~l~~spdg~~lasg~~dg~I~iw 318 (415)
- ..|.+.|+++.++ +++.++|+.||.|++||=-+.. ++..+ .+|. .+||+..|..+|+++++.|.|..+++|
T Consensus 254 anPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~r-Cv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLW 332 (430)
T KOG0640|consen 254 ANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNR-CVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLW 332 (430)
T ss_pred cCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHH-HHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeee
Confidence 4 3689999999998 6899999999999999987776 44443 4564 579999999999999999999999999
Q ss_pred ECCCCceeEEeccCC--C---cEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEE--EeeCCCCEEEEEECCCCCe
Q 014934 319 NQHSTQPVLKYCEHT--A---AVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLS--CMDTGSQVCNLVWSKNVNE 391 (415)
Q Consensus 319 d~~~~~~~~~~~~h~--~---~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~--~~~~~~~V~~l~~s~~~~~ 391 (415)
.+.+++++..+.+-. + .-+...|+....++|.--. ..+.+.-||.+++..+. .+.|.+.+..+.-||.+..
T Consensus 333 Ei~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDE--as~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~ 410 (430)
T KOG0640|consen 333 EISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDE--ASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPA 410 (430)
T ss_pred eecCCceEEEEecCCcccchhhhhhhhhcCccceEEcccc--ccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCc
Confidence 999999999987531 1 1234567766666666543 57889999999987654 4568899999999999999
Q ss_pred EEEEEecCCCcEEEEECC
Q 014934 392 LVSTHGYSQNQIIVWRYP 409 (415)
Q Consensus 392 l~s~~g~~dg~I~vw~~~ 409 (415)
+++ ++.|-.+++|--.
T Consensus 411 FmT--csdD~raRFWyrr 426 (430)
T KOG0640|consen 411 FMT--CSDDFRARFWYRR 426 (430)
T ss_pred eee--ecccceeeeeeec
Confidence 998 7789999999643
No 101
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.90 E-value=6.8e-22 Score=173.55 Aligned_cols=201 Identities=17% Similarity=0.285 Sum_probs=177.3
Q ss_pred CCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCcc
Q 014934 206 GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDF 283 (415)
Q Consensus 206 ~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~ 283 (415)
+|+.+++-|.++.+|.+|.+++.|.++.+|-..+|+.+.++.+|.+.|+|++.+ ...+++|+.|.++++||+.+++.
T Consensus 8 GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~- 86 (327)
T KOG0643|consen 8 GHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQ- 86 (327)
T ss_pred cCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcE-
Confidence 899999999999999999999999999999999999999999999999999876 68999999999999999999983
Q ss_pred EEEeccccCCeEEEEEeCCCCEEEEEeC-----CCcEEEEECC-------CCceeEEeccCCCcEEEEEEcCCCCcEEEE
Q 014934 284 VSKLSGHKSEVCGLKWSYDNRELASGGN-----DNRLFVWNQH-------STQPVLKYCEHTAAVKAIAWSPHLHGLLAS 351 (415)
Q Consensus 284 ~~~~~~h~~~V~~l~~spdg~~lasg~~-----dg~I~iwd~~-------~~~~~~~~~~h~~~V~~l~~sp~~~~llas 351 (415)
+..++ ...+|..+.|+++|++++.... .+.|.++|++ +.+++.++..+...++.+.|.|-+. .+++
T Consensus 87 la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~-~ii~ 164 (327)
T KOG0643|consen 87 LATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGE-TIIA 164 (327)
T ss_pred EEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCC-EEEE
Confidence 55554 4578999999999999877643 4679999998 4567888888999999999999998 5555
Q ss_pred EcCCCCCeEEEEECCCCcEEEEe--eCCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCCcc
Q 014934 352 GGGTADRCIRFWNTTTNTHLSCM--DTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSK 413 (415)
Q Consensus 352 ggg~~d~~I~iwd~~t~~~~~~~--~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~~ 413 (415)
|. +||.|.+||+++|+.+..- .|.+.|+.++++++..++++ |+.|.+-++||+.+++.
T Consensus 165 Gh--e~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT--~s~Dttakl~D~~tl~v 224 (327)
T KOG0643|consen 165 GH--EDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFIT--GSKDTTAKLVDVRTLEV 224 (327)
T ss_pred ec--CCCcEEEEEcccCceeeechhhhccccccccccCCcceEEe--cccCccceeeeccceee
Confidence 65 8999999999998665443 27789999999999999999 88999999999998764
No 102
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=8.2e-22 Score=197.78 Aligned_cols=235 Identities=18% Similarity=0.286 Sum_probs=192.8
Q ss_pred ceeEeecCC-CcEEEE-EcCCeEEEEECCCC-CeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEE
Q 014934 169 YLNLVDWSS-HNVLAV-GLGNCVYLWNACSS-KVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRT 245 (415)
Q Consensus 169 ~i~~l~ws~-~~~la~-~~d~~V~iwd~~~~-~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~ 245 (415)
..+.|+|.+ +.+|.+ +.|+.|++|+.... +....+. .+...|.+++. .+.+|++|+.+++|.+|.+..++.-..
T Consensus 15 G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~-~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~~~~~i 91 (933)
T KOG1274|consen 15 GLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETID-ISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSGEEDTI 91 (933)
T ss_pred ceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhh-ccCceeEEEee--cccceEEeeccceEEEeeCCCCCccce
Confidence 367888988 555554 57899999997665 3333332 25567777665 455999999999999999988876666
Q ss_pred ecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Q 014934 246 MEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHST 323 (415)
Q Consensus 246 l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~ 323 (415)
+....-++.+++++ +.+++.||.|-.|++.++.... ....+.+|.++|.+|.|+|.+++||+.+.||.|+|||+.++
T Consensus 92 L~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s-~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~ 170 (933)
T KOG1274|consen 92 LARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSS-QEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDG 170 (933)
T ss_pred eeeeeccceEEEEecCCcEEEeecCceeEEEEeccccc-hheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccc
Confidence 66667788899998 5799999999999999998877 47788999999999999999999999999999999999998
Q ss_pred ceeEEecc--------CCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee---CCCCEEEEEECCCCCeE
Q 014934 324 QPVLKYCE--------HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD---TGSQVCNLVWSKNVNEL 392 (415)
Q Consensus 324 ~~~~~~~~--------h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~---~~~~V~~l~~s~~~~~l 392 (415)
.....+.+ ....+..++|+|++..+++.+ .|++|++|+..+......+. +.+.++.++|+|+|.||
T Consensus 171 ~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~---~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~Yi 247 (933)
T KOG1274|consen 171 ILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPP---VDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYI 247 (933)
T ss_pred hhhhhcccCCccccccccceeeeeeecCCCCeEEeec---cCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEE
Confidence 77666543 134567899999987787777 59999999999998877764 33459999999999999
Q ss_pred EEEEecCCCcEEEEECCCCc
Q 014934 393 VSTHGYSQNQIIVWRYPTMS 412 (415)
Q Consensus 393 ~s~~g~~dg~I~vw~~~s~~ 412 (415)
++ ++.+|+|.|||+.+++
T Consensus 248 AA--s~~~g~I~vWnv~t~~ 265 (933)
T KOG1274|consen 248 AA--STLDGQILVWNVDTHE 265 (933)
T ss_pred ee--eccCCcEEEEecccch
Confidence 99 8899999999998643
No 103
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=1.1e-21 Score=175.88 Aligned_cols=231 Identities=15% Similarity=0.212 Sum_probs=184.7
Q ss_pred ceeEeecCCCcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCC--eEEEEECCCcEEEEECCCCeeeEE
Q 014934 169 YLNLVDWSSHNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNT--HLAVGTSHGKVQIWDASRCKRVRT 245 (415)
Q Consensus 169 ~i~~l~ws~~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~--~la~g~~dg~V~iwd~~~~~~~~~ 245 (415)
.|++++.+. .++|.| .|.+|+|||+........+. .|.+.|+++.|.+.-. +|++|+.||.|.+|+.....++.+
T Consensus 45 sitavAVs~-~~~aSGssDetI~IYDm~k~~qlg~ll-~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~s 122 (362)
T KOG0294|consen 45 SITALAVSG-PYVASGSSDETIHIYDMRKRKQLGILL-SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKS 122 (362)
T ss_pred ceeEEEecc-eeEeccCCCCcEEEEeccchhhhccee-ccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeee
Confidence 588888774 445555 68999999998877666654 7899999999998765 899999999999999999999999
Q ss_pred ecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Q 014934 246 MEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHST 323 (415)
Q Consensus 246 l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~ 323 (415)
+++|.+.|+.++.+ +.+.++.+.|+.++.||+-.+..-...-..+ .-..+.|+|.|.+|+.++.++ |-||.+.+.
T Consensus 123 lK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~--~at~v~w~~~Gd~F~v~~~~~-i~i~q~d~A 199 (362)
T KOG0294|consen 123 LKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKN--KATLVSWSPQGDHFVVSGRNK-IDIYQLDNA 199 (362)
T ss_pred ecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCC--cceeeEEcCCCCEEEEEeccE-EEEEecccH
Confidence 99999999999998 4788899999999999998776322221223 344499999999999988764 999999888
Q ss_pred ceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee-CCCCEEEEEE--CCCCCeEEEEEecCC
Q 014934 324 QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVW--SKNVNELVSTHGYSQ 400 (415)
Q Consensus 324 ~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~-~~~~V~~l~~--s~~~~~l~s~~g~~d 400 (415)
+....+.. ...+.++.|-.. ..|++|+ .|+.|++||...+.++..+. |...|-.+.+ .|++.+|++ .++|
T Consensus 200 ~v~~~i~~-~~r~l~~~~l~~--~~L~vG~--d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvT--aSSD 272 (362)
T KOG0294|consen 200 SVFREIEN-PKRILCATFLDG--SELLVGG--DNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVT--ASSD 272 (362)
T ss_pred hHhhhhhc-cccceeeeecCC--ceEEEec--CCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEE--eccC
Confidence 76665533 355667766644 3566665 79999999999988887775 7788988874 456777777 6789
Q ss_pred CcEEEEECCCC
Q 014934 401 NQIIVWRYPTM 411 (415)
Q Consensus 401 g~I~vw~~~s~ 411 (415)
|.|+|||+..-
T Consensus 273 G~I~vWd~~~~ 283 (362)
T KOG0294|consen 273 GFIKVWDIDME 283 (362)
T ss_pred ceEEEEEcccc
Confidence 99999998754
No 104
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=3.4e-21 Score=173.06 Aligned_cols=232 Identities=15% Similarity=0.258 Sum_probs=189.0
Q ss_pred eeEeecC--CCcEEEEEc--CCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEE
Q 014934 170 LNLVDWS--SHNVLAVGL--GNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRT 245 (415)
Q Consensus 170 i~~l~ws--~~~~la~~~--d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~ 245 (415)
+.++.|- +..++.++. |.+|+..++.+.+.++.+. +|...|.+++.+|-+..+++++.|++|++||++..++...
T Consensus 59 ~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~-GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~ 137 (311)
T KOG1446|consen 59 VDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFP-GHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGL 137 (311)
T ss_pred ccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEcC-CCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceE
Confidence 4444543 356666664 7899999999999999987 9999999999999999999999999999999998888877
Q ss_pred ecCCCccEEEEEeeCCEEEEEeCCCcEEEEECCCCC-ccEEEec---cccCCeEEEEEeCCCCEEEEEeCCCcEEEEECC
Q 014934 246 MEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQE-DFVSKLS---GHKSEVCGLKWSYDNRELASGGNDNRLFVWNQH 321 (415)
Q Consensus 246 l~~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~-~~~~~~~---~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~ 321 (415)
+.....+|.+..-.|-+++++...+.|++||+|... .+...+. +-..+...|.|+|||++|+.+...+.+++.|.-
T Consensus 138 l~~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf 217 (311)
T KOG1446|consen 138 LNLSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAF 217 (311)
T ss_pred EecCCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEcc
Confidence 765555565554446788888877799999999763 2333333 346789999999999999999999999999999
Q ss_pred CCceeEEeccCCCcE---EEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeC--CCCEEEEEECCCCCeEEEEE
Q 014934 322 STQPVLKYCEHTAAV---KAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDT--GSQVCNLVWSKNVNELVSTH 396 (415)
Q Consensus 322 ~~~~~~~~~~h~~~V---~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~--~~~V~~l~~s~~~~~l~s~~ 396 (415)
+|.....+.++...- ...+|.|+++ ++.+|+ .||+|.+|++++|..+..+.. ...+.++.|+|....+++
T Consensus 218 ~G~~~~tfs~~~~~~~~~~~a~ftPds~-Fvl~gs--~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~s-- 292 (311)
T KOG1446|consen 218 DGTVKSTFSGYPNAGNLPLSATFTPDSK-FVLSGS--DDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVS-- 292 (311)
T ss_pred CCcEeeeEeeccCCCCcceeEEECCCCc-EEEEec--CCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeee--
Confidence 999999998776543 5788999998 555554 799999999999999988874 678999999999888877
Q ss_pred ecCCCcEEEEECC
Q 014934 397 GYSQNQIIVWRYP 409 (415)
Q Consensus 397 g~~dg~I~vw~~~ 409 (415)
+ +..+.+|=..
T Consensus 293 a--~s~l~fw~p~ 303 (311)
T KOG1446|consen 293 A--SSNLVFWLPD 303 (311)
T ss_pred c--CceEEEEecc
Confidence 3 4478888654
No 105
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.90 E-value=1.7e-22 Score=190.33 Aligned_cols=238 Identities=18% Similarity=0.307 Sum_probs=195.3
Q ss_pred eeEeecCCCcEEEEE---cCCeEEEEECCC--CCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeE
Q 014934 170 LNLVDWSSHNVLAVG---LGNCVYLWNACS--SKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVR 244 (415)
Q Consensus 170 i~~l~ws~~~~la~~---~d~~V~iwd~~~--~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~ 244 (415)
++.+.|+..++|+++ .|..|.+|.-.. +++..+-. ...+.-.||+......++++|+..|.|+|||++...+.+
T Consensus 37 ~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k-~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr 115 (673)
T KOG4378|consen 37 DFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRK-LTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHR 115 (673)
T ss_pred ceeeeccccceEEEeecCCceeEEEecccCCCCccceeec-cccchHHHHhhhhcceeeeccCcCceeeehhhHHHHHhh
Confidence 678899996655554 356788886433 23333322 223355566665566899999999999999999777888
Q ss_pred EecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEec-cccCCeEEEEEeCCCCE-EEEEeCCCcEEEEEC
Q 014934 245 TMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLS-GHKSEVCGLKWSYDNRE-LASGGNDNRLFVWNQ 320 (415)
Q Consensus 245 ~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-~h~~~V~~l~~spdg~~-lasg~~dg~I~iwd~ 320 (415)
.+++|...|+++.++ ..+|++++..|.|.+..+.++.. ...+. +..+.|.-+.++|..+. |.+++.+|.|.+||+
T Consensus 116 ~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~-tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv 194 (673)
T KOG4378|consen 116 FLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQK-TTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDV 194 (673)
T ss_pred hccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcc-ccceecCCCCeEEEeecccccceeeEeeccCCeEEEEec
Confidence 899999999999998 68999999999999999988764 23333 33566779999997776 456899999999999
Q ss_pred CCCceeEEec-cCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEEEEecC
Q 014934 321 HSTQPVLKYC-EHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYS 399 (415)
Q Consensus 321 ~~~~~~~~~~-~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~ 399 (415)
....+++.+. .|.++...|+|+|.+..||++-| .|+.|.+||+...+...++....+...++|+++|.+|++ |.+
T Consensus 195 ~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG--~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~a--G~s 270 (673)
T KOG4378|consen 195 QGMSPIFHASEAHSAPCRGICFSPSNEALLVSVG--YDKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCA--GNS 270 (673)
T ss_pred cCCCcccchhhhccCCcCcceecCCccceEEEec--ccceEEEeecccccccceeeecCCcceeeecCCceEEEe--ecC
Confidence 9888887664 69999999999999999999998 999999999999888888888899999999999999999 899
Q ss_pred CCcEEEEECCCCcc
Q 014934 400 QNQIIVWRYPTMSK 413 (415)
Q Consensus 400 dg~I~vw~~~s~~~ 413 (415)
.|.|..||+...++
T Consensus 271 ~G~~i~YD~R~~k~ 284 (673)
T KOG4378|consen 271 KGELIAYDMRSTKA 284 (673)
T ss_pred CceEEEEecccCCC
Confidence 99999999987664
No 106
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=5.3e-22 Score=183.34 Aligned_cols=258 Identities=16% Similarity=0.257 Sum_probs=205.5
Q ss_pred CCCCCCCCCCCCceeccCCCCCCCcceeEeecCC-CcEEEEEc-CCeEEEEECCCCCe---EEeEecCCCCCeEEEEEcC
Q 014934 144 PVKAPRKVPRSPYKILDAPALQDDFYLNLVDWSS-HNVLAVGL-GNCVYLWNACSSKV---TKLCDLGIDDSVCSVGWAN 218 (415)
Q Consensus 144 ~~k~~r~i~~~p~~~ld~~~l~~~~~i~~l~ws~-~~~la~~~-d~~V~iwd~~~~~~---~~~~~~~~~~~V~~v~~sp 218 (415)
-....+++|....++|.... + .|.-+.||+ +.+||+++ |.+..||.+..... ...+. +|..+|..+.|||
T Consensus 205 h~c~~~qip~qt~qil~~ht--d--EVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlv-gh~~~V~yi~wSP 279 (519)
T KOG0293|consen 205 HFCGRLQIPSQTWQILQDHT--D--EVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLV-GHSQPVSYIMWSP 279 (519)
T ss_pred cccCcccCCchhhhhHhhCC--C--cEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeee-cccCceEEEEECC
Confidence 34556788888888887643 3 377899999 89999985 78899998755433 33333 8999999999999
Q ss_pred CCCeEEEEECCCcEEEEECCCCeeeEEec-CCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccc-cCCe
Q 014934 219 RNTHLAVGTSHGKVQIWDASRCKRVRTME-GHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGH-KSEV 294 (415)
Q Consensus 219 ~g~~la~g~~dg~V~iwd~~~~~~~~~l~-~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h-~~~V 294 (415)
|.++|++|+.+..+.+||+.++.....+. +|...+.+.+|. +..+++|+.|++|..||+.... ....++- ...|
T Consensus 280 DdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~--~~~W~gvr~~~v 357 (519)
T KOG0293|consen 280 DDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI--LGNWEGVRDPKV 357 (519)
T ss_pred CCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch--hhccccccccee
Confidence 99999999999999999999999888775 356789999998 4689999999999999998654 3344433 2569
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEe
Q 014934 295 CGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCM 374 (415)
Q Consensus 295 ~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~ 374 (415)
.+++.++||+++++.+.|..|++++..+....... ....+|+++..+.++++.|+.- .+..|++||+...+.+..+
T Consensus 358 ~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~li-se~~~its~~iS~d~k~~LvnL---~~qei~LWDl~e~~lv~kY 433 (519)
T KOG0293|consen 358 HDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLI-SEEQPITSFSISKDGKLALVNL---QDQEIHLWDLEENKLVRKY 433 (519)
T ss_pred EEEEEcCCCcEEEEEecccceeeechhhhhhhccc-cccCceeEEEEcCCCcEEEEEc---ccCeeEEeecchhhHHHHh
Confidence 99999999999999999999999999876655444 3456899999999999777765 6999999999977766665
Q ss_pred eC---CCCEEEEEECCCC-CeEEEEEecCCCcEEEEECCCCccc
Q 014934 375 DT---GSQVCNLVWSKNV-NELVSTHGYSQNQIIVWRYPTMSKV 414 (415)
Q Consensus 375 ~~---~~~V~~l~~s~~~-~~l~s~~g~~dg~I~vw~~~s~~~l 414 (415)
.. +..+..-+|.-.. .++++ |++|++|+||+-.+++.+
T Consensus 434 ~Ghkq~~fiIrSCFgg~~~~fiaS--GSED~kvyIWhr~sgkll 475 (519)
T KOG0293|consen 434 FGHKQGHFIIRSCFGGGNDKFIAS--GSEDSKVYIWHRISGKLL 475 (519)
T ss_pred hcccccceEEEeccCCCCcceEEe--cCCCceEEEEEccCCcee
Confidence 42 3446666776654 56666 999999999999887654
No 107
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.90 E-value=6.4e-22 Score=181.04 Aligned_cols=234 Identities=26% Similarity=0.491 Sum_probs=175.3
Q ss_pred eeEeecCC--CcEEEEE--cCCeEEEEECCC--------------CCeEEeEec-CCCCCeEEEEEcCCC-CeEEEEECC
Q 014934 170 LNLVDWSS--HNVLAVG--LGNCVYLWNACS--------------SKVTKLCDL-GIDDSVCSVGWANRN-THLAVGTSH 229 (415)
Q Consensus 170 i~~l~ws~--~~~la~~--~d~~V~iwd~~~--------------~~~~~~~~~-~~~~~V~~v~~sp~g-~~la~g~~d 229 (415)
+|-+.-++ +..|+++ ..|.|+||++.. .+...++.+ +|...=++++|||-. ..|++|..-
T Consensus 154 ~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~ 233 (440)
T KOG0302|consen 154 INRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCV 233 (440)
T ss_pred cceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccc
Confidence 44444433 4455555 358999999742 111222333 677888999999932 358888888
Q ss_pred CcEEEEECCCCeee---EEecCCCccEEEEEeeC---CEEEEEeCCCcEEEEECCCCCc-cEEEeccccCCeEEEEEeCC
Q 014934 230 GKVQIWDASRCKRV---RTMEGHRLRVGALAWSS---SLLSSGSRDKSILQRDIRAQED-FVSKLSGHKSEVCGLKWSYD 302 (415)
Q Consensus 230 g~V~iwd~~~~~~~---~~l~~h~~~V~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~-~~~~~~~h~~~V~~l~~spd 302 (415)
+.|++|...++.-. ..+.+|...|-.|+|+| ..|++||.||+|+|||+|.+.+ .....++|.+.|+-|.|+..
T Consensus 234 ~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~ 313 (440)
T KOG0302|consen 234 KGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRR 313 (440)
T ss_pred cceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCC
Confidence 89999999886422 34567999999999984 7999999999999999998732 23344789999999999998
Q ss_pred CCEEEEEeCCCcEEEEECCC---CceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcE---------
Q 014934 303 NRELASGGNDNRLFVWNQHS---TQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTH--------- 370 (415)
Q Consensus 303 g~~lasg~~dg~I~iwd~~~---~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~--------- 370 (415)
..+||+|+.||+++|||+++ ++++..|+-|.++|++|.|+|.....++++| .|..|.+||+....-
T Consensus 314 ~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg--~D~QitiWDlsvE~D~ee~~~~a~ 391 (440)
T KOG0302|consen 314 EPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASG--EDNQITIWDLSVEADEEEIDQEAA 391 (440)
T ss_pred cceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEecc--CCCcEEEEEeeccCChhhhccccc
Confidence 88999999999999999975 5789999999999999999999888888887 899999999964221
Q ss_pred ---------EEEee-CCCCEEEEEECCCCCeEEEEEecCCCcEEEEE
Q 014934 371 ---------LSCMD-TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWR 407 (415)
Q Consensus 371 ---------~~~~~-~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~ 407 (415)
+--+. ....|-.+.|+++-.-++++++ .|| +.||.
T Consensus 392 ~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa-~dG-fnVfk 436 (440)
T KOG0302|consen 392 EGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTA-IDG-FNVFK 436 (440)
T ss_pred cchhcCCceeEEEecchhHhhhheeccCCCCeEEEec-ccc-eeEEE
Confidence 11111 2345778999998665555433 343 55664
No 108
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.90 E-value=9.8e-22 Score=191.89 Aligned_cols=221 Identities=21% Similarity=0.335 Sum_probs=188.8
Q ss_pred eecCC---CcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEecCC
Q 014934 173 VDWSS---HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGH 249 (415)
Q Consensus 173 l~ws~---~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h 249 (415)
+++-+ +.++..+.|.+|.+|...+......+. +|...|+|+....++. +++|+.|.++++|-.. ++...+.+|
T Consensus 64 i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~Lk-gH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~--~l~~~l~gH 139 (745)
T KOG0301|consen 64 ICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLK-GHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIG--ELVYSLQGH 139 (745)
T ss_pred ceeccccCcceEeecccceEEEEecCCCCchhhhh-ccccceeeeecCCcCc-eEecccccceEEecch--hhhcccCCc
Confidence 55554 345666679999999999988877775 9999999999988888 9999999999999764 556669999
Q ss_pred CccEEEEEee-CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEE
Q 014934 250 RLRVGALAWS-SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLK 328 (415)
Q Consensus 250 ~~~V~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~ 328 (415)
+..|++++.- .+.+++|+.|++|++|.- ...+.++.+|..-|.++++-+++ .|+++++||.|+.|++ ++..+.+
T Consensus 140 ~asVWAv~~l~e~~~vTgsaDKtIklWk~---~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~ 214 (745)
T KOG0301|consen 140 TASVWAVASLPENTYVTGSADKTIKLWKG---GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLE 214 (745)
T ss_pred chheeeeeecCCCcEEeccCcceeeeccC---CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeee
Confidence 9999999876 479999999999999975 33678899999999999999754 6889999999999999 7889999
Q ss_pred eccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCC-CEEEEEECCCCCeEEEEEecCCCcEEEEE
Q 014934 329 YCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGS-QVCNLVWSKNVNELVSTHGYSQNQIIVWR 407 (415)
Q Consensus 329 ~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~-~V~~l~~s~~~~~l~s~~g~~dg~I~vw~ 407 (415)
+.+|+..|.++.....+. +++++| +|++++||+.. ++.+.+.+.. .|+++.+-++|..+ + |++||.|+||.
T Consensus 215 ~~ghtn~vYsis~~~~~~-~Ivs~g--EDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgDIv-v--g~SDG~VrVfT 286 (745)
T KOG0301|consen 215 MHGHTNFVYSISMALSDG-LIVSTG--EDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGDIV-V--GGSDGRVRVFT 286 (745)
T ss_pred eeccceEEEEEEecCCCC-eEEEec--CCceEEEeecC--ceEEEEecCccceEEEEEeeCCCEE-E--eccCceEEEEE
Confidence 999999999999666554 788887 99999999987 8888888765 79999999999854 4 67899999998
Q ss_pred CCC
Q 014934 408 YPT 410 (415)
Q Consensus 408 ~~s 410 (415)
...
T Consensus 287 ~~k 289 (745)
T KOG0301|consen 287 VDK 289 (745)
T ss_pred ecc
Confidence 763
No 109
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.90 E-value=1.8e-20 Score=177.06 Aligned_cols=236 Identities=12% Similarity=0.078 Sum_probs=177.7
Q ss_pred eeEeecCC-CcEE-EEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEE-ECCCcEEEEECCCCeeeEE
Q 014934 170 LNLVDWSS-HNVL-AVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVG-TSHGKVQIWDASRCKRVRT 245 (415)
Q Consensus 170 i~~l~ws~-~~~l-a~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g-~~dg~V~iwd~~~~~~~~~ 245 (415)
+..++|++ +..+ +++ .++.|++||..+++....+.. ...+..++|+|+|+.++++ ..++.|.+||+.+.+.+..
T Consensus 33 ~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~ 110 (300)
T TIGR03866 33 PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPS--GPDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAE 110 (300)
T ss_pred CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccC--CCCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeE
Confidence 34688998 5544 444 468999999999887665542 2346788999999977665 4589999999999887777
Q ss_pred ecCCCccEEEEEee--CCEEEEEeCCC-cEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEE-eCCCcEEEEECC
Q 014934 246 MEGHRLRVGALAWS--SSLLSSGSRDK-SILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASG-GNDNRLFVWNQH 321 (415)
Q Consensus 246 l~~h~~~V~~l~~~--~~~l~sgs~dg-~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg-~~dg~I~iwd~~ 321 (415)
+.. ...+.+++|+ +.++++++.++ .+.+||.++... ..... ....+.+++|+|++++|+++ ..++.|++||+.
T Consensus 111 ~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~-~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~ 187 (300)
T TIGR03866 111 IPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEI-VDNVL-VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVA 187 (300)
T ss_pred eeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeE-EEEEE-cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcC
Confidence 763 3346778887 57888887765 467789887652 33222 23356789999999988654 568999999999
Q ss_pred CCceeEEeccCC-----C--cEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEE
Q 014934 322 STQPVLKYCEHT-----A--AVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVS 394 (415)
Q Consensus 322 ~~~~~~~~~~h~-----~--~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s 394 (415)
+++.+..+..+. . ....++|+|+++.++++.+ .++.|.+||+.+++.+..+.++..+.++.|+|+|++|++
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~--~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~ 265 (300)
T TIGR03866 188 TRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALG--PANRVAVVDAKTYEVLDYLLVGQRVWQLAFTPDEKYLLT 265 (300)
T ss_pred cceeeeeeeecccccccccCCccceEECCCCCEEEEEcC--CCCeEEEEECCCCcEEEEEEeCCCcceEEECCCCCEEEE
Confidence 988776654321 1 2356899999997666654 467899999999998877767778999999999999987
Q ss_pred EEecCCCcEEEEECCCCcc
Q 014934 395 THGYSQNQIIVWRYPTMSK 413 (415)
Q Consensus 395 ~~g~~dg~I~vw~~~s~~~ 413 (415)
+ +..+|.|.+||+.+++.
T Consensus 266 ~-~~~~~~i~v~d~~~~~~ 283 (300)
T TIGR03866 266 T-NGVSNDVSVIDVAALKV 283 (300)
T ss_pred E-cCCCCeEEEEECCCCcE
Confidence 4 34689999999998764
No 110
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.89 E-value=1.9e-22 Score=190.27 Aligned_cols=245 Identities=20% Similarity=0.267 Sum_probs=199.2
Q ss_pred CCCCCcceeEeecCC-CcEEEEEcCCeEEEEECCCCC---eEEeEec-CCCCCeEEEEEcCCCCeEEEEECCCcEEEEEC
Q 014934 163 ALQDDFYLNLVDWSS-HNVLAVGLGNCVYLWNACSSK---VTKLCDL-GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDA 237 (415)
Q Consensus 163 ~l~~~~~i~~l~ws~-~~~la~~~d~~V~iwd~~~~~---~~~~~~~-~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~ 237 (415)
.|.....|..+..|. ...+.+|..++|+|||+.... .+..+.. .....|.++.+.|||+.|++|+.-.+|.|||+
T Consensus 415 tL~HGEvVcAvtIS~~trhVyTgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDL 494 (705)
T KOG0639|consen 415 TLAHGEVVCAVTISNPTRHVYTGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDL 494 (705)
T ss_pred hhccCcEEEEEEecCCcceeEecCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeec
Confidence 344555677788887 788888889999999986532 1222221 34678999999999999999999999999999
Q ss_pred CCCee--eEEecCCCccEEEEEeeC--CEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCC
Q 014934 238 SRCKR--VRTMEGHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDN 313 (415)
Q Consensus 238 ~~~~~--~~~l~~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg 313 (415)
..... ...+......+.+++.++ +..+++..||.|.|||+++.. .+..+++|...+.||.+++||..|-+|+-|+
T Consensus 495 AapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~-~VrqfqGhtDGascIdis~dGtklWTGGlDn 573 (705)
T KOG0639|consen 495 AAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQT-LVRQFQGHTDGASCIDISKDGTKLWTGGLDN 573 (705)
T ss_pred cCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccce-eeecccCCCCCceeEEecCCCceeecCCCcc
Confidence 76543 233333344566677774 788999999999999999887 7899999999999999999999999999999
Q ss_pred cEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEE
Q 014934 314 RLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELV 393 (415)
Q Consensus 314 ~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~ 393 (415)
+|+.||+++++.+++. .....|.++.+||.+.++++ |.+.+.+.+-.+...+..+.-.|.+-|.++.|.+.|++++
T Consensus 574 tvRcWDlregrqlqqh-dF~SQIfSLg~cP~~dWlav---GMens~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfv 649 (705)
T KOG0639|consen 574 TVRCWDLREGRQLQQH-DFSSQIFSLGYCPTGDWLAV---GMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFV 649 (705)
T ss_pred ceeehhhhhhhhhhhh-hhhhhheecccCCCccceee---ecccCcEEEEecCCccceeecccccEEEEEEecccCceee
Confidence 9999999999877665 45678999999999997766 4488999998887666655556889999999999999999
Q ss_pred EEEecCCCcEEEEECCCCccc
Q 014934 394 STHGYSQNQIIVWRYPTMSKV 414 (415)
Q Consensus 394 s~~g~~dg~I~vw~~~s~~~l 414 (415)
++ +.|+-+-.|..+-+..|
T Consensus 650 St--GkDnlLnawrtPyGasi 668 (705)
T KOG0639|consen 650 ST--GKDNLLNAWRTPYGASI 668 (705)
T ss_pred ec--CchhhhhhccCccccce
Confidence 95 58999999999876654
No 111
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.89 E-value=2.7e-21 Score=176.36 Aligned_cols=201 Identities=20% Similarity=0.281 Sum_probs=178.3
Q ss_pred CCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCcc
Q 014934 206 GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDF 283 (415)
Q Consensus 206 ~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~ 283 (415)
.|.+.|.+|+.+|+.+++|+|+.|....||++.++.....+.+|...|+++.|+ +.+|++|+.+|.|.+|+..++..
T Consensus 62 ~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~- 140 (399)
T KOG0296|consen 62 KHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGE- 140 (399)
T ss_pred hcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCce-
Confidence 799999999999999999999999999999999999999999999999999998 78999999999999999998873
Q ss_pred EEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEE
Q 014934 284 VSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFW 363 (415)
Q Consensus 284 ~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iw 363 (415)
...+...-..|.=|.|+|-+..|+.|+.||.|.+|.+.++...+.+.+|+.++++=.|.|+|+ .++++. .|++|++|
T Consensus 141 ~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGK-r~~tgy--~dgti~~W 217 (399)
T KOG0296|consen 141 QWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGK-RILTGY--DDGTIIVW 217 (399)
T ss_pred EEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCc-eEEEEe--cCceEEEE
Confidence 455555556788899999999999999999999999999888899999999999999999998 555554 79999999
Q ss_pred ECCCCcEEEEee--CCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCCc
Q 014934 364 NTTTNTHLSCMD--TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMS 412 (415)
Q Consensus 364 d~~t~~~~~~~~--~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~ 412 (415)
|..+++++..+. .+....++.++..+..++. |..++.+++-+-.+++
T Consensus 218 n~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~--g~~e~~~~~~~~~sgK 266 (399)
T KOG0296|consen 218 NPKTGQPLHKITQAEGLELPCISLNLAGSTLTK--GNSEGVACGVNNGSGK 266 (399)
T ss_pred ecCCCceeEEecccccCcCCccccccccceeEe--ccCCccEEEEccccce
Confidence 999999998886 3456778888888888877 7788888877766654
No 112
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.89 E-value=7.7e-22 Score=175.31 Aligned_cols=202 Identities=21% Similarity=0.338 Sum_probs=167.8
Q ss_pred CCCCCeEEEEEcC-CCCeEEEEECCCcEEEEECCCCe----------eeEE-----ecCCCccEEEEEeeC---CEEEEE
Q 014934 206 GIDDSVCSVGWAN-RNTHLAVGTSHGKVQIWDASRCK----------RVRT-----MEGHRLRVGALAWSS---SLLSSG 266 (415)
Q Consensus 206 ~~~~~V~~v~~sp-~g~~la~g~~dg~V~iwd~~~~~----------~~~~-----l~~h~~~V~~l~~~~---~~l~sg 266 (415)
.|.+.|.++.+.+ .|+++++|+.||.|.+||++... .+.. -.+|.-.|..+.|-| ..+.++
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtss 120 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSS 120 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecc
Confidence 6789999999987 68999999999999999997532 1111 136888999999974 799999
Q ss_pred eCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCC---CCEEEEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcC
Q 014934 267 SRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYD---NRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSP 343 (415)
Q Consensus 267 s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd---g~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp 343 (415)
+.|.++++||..+.+. ...+ ...+.|.+-+|+|- .-++|+|..|-+|++-|+.+|...+.+.+|...|.++.|+|
T Consensus 121 SFDhtlKVWDtnTlQ~-a~~F-~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp 198 (397)
T KOG4283|consen 121 SFDHTLKVWDTNTLQE-AVDF-KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSP 198 (397)
T ss_pred cccceEEEeeccccee-eEEe-ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEecc
Confidence 9999999999988763 3233 34567888888883 45788899999999999999999999999999999999999
Q ss_pred CCCcEEEEEcCCCCCeEEEEECCCC-cEEEEee---------------CCCCEEEEEECCCCCeEEEEEecCCCcEEEEE
Q 014934 344 HLHGLLASGGGTADRCIRFWNTTTN-THLSCMD---------------TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWR 407 (415)
Q Consensus 344 ~~~~llasggg~~d~~I~iwd~~t~-~~~~~~~---------------~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~ 407 (415)
...++|++|+ .||.|++||++.. -++..++ +.+.|.+++|+.++.++++ .+.|..+++|+
T Consensus 199 ~~e~vLatgs--aDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~--~gtd~r~r~wn 274 (397)
T KOG4283|consen 199 SSEWVLATGS--ADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLAS--CGTDDRIRVWN 274 (397)
T ss_pred CceeEEEecC--CCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhh--ccCccceEEee
Confidence 9999999998 9999999999864 3333332 4467999999999999999 45788999999
Q ss_pred CCCCcc
Q 014934 408 YPTMSK 413 (415)
Q Consensus 408 ~~s~~~ 413 (415)
..+++.
T Consensus 275 ~~~G~n 280 (397)
T KOG4283|consen 275 MESGRN 280 (397)
T ss_pred cccCcc
Confidence 988753
No 113
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.89 E-value=3.2e-22 Score=188.68 Aligned_cols=247 Identities=18% Similarity=0.264 Sum_probs=203.5
Q ss_pred CCCCceeccCCCCCCCcceeEeecCC-CcEEEEE-cCCeEEEEECCCCCeEEeEecC-CCCCeEEEEEcCCCCeEEEEEC
Q 014934 152 PRSPYKILDAPALQDDFYLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDLG-IDDSVCSVGWANRNTHLAVGTS 228 (415)
Q Consensus 152 ~~~p~~~ld~~~l~~~~~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~~~-~~~~V~~v~~sp~g~~la~g~~ 228 (415)
.+.|.--||. +..+-||..+...+ ++.|.+| ...+|.|||+.........++. ..-.+.+++.+||.+..++++.
T Consensus 452 ~k~PvsqLdc--l~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccs 529 (705)
T KOG0639|consen 452 NKSPVSQLDC--LNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCS 529 (705)
T ss_pred CCCccccccc--cCcccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeecc
Confidence 3455555554 45566788877777 6666665 5579999999876543333332 2346788999999999999999
Q ss_pred CCcEEEEECCCCeeeEEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEE
Q 014934 229 HGKVQIWDASRCKRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNREL 306 (415)
Q Consensus 229 dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 306 (415)
||.|.|||+.+...++.|.+|...+.||..+ +..|.+|+-|.+|+.||++.+.++.. ......|.+|..+|.+.+|
T Consensus 530 dGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqq--hdF~SQIfSLg~cP~~dWl 607 (705)
T KOG0639|consen 530 DGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQ--HDFSSQIFSLGYCPTGDWL 607 (705)
T ss_pred CCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhh--hhhhhhheecccCCCccce
Confidence 9999999999999999999999999999998 78999999999999999998874322 2345789999999999999
Q ss_pred EEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCCCEEEEEEC
Q 014934 307 ASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWS 386 (415)
Q Consensus 307 asg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s 386 (415)
|+|-.++.+.|-..... ..+.+..|..-|.++.|.+.|++++.+| .|..+..|.+.-|..+...+..+.|.++..|
T Consensus 608 avGMens~vevlh~skp-~kyqlhlheScVLSlKFa~cGkwfvStG---kDnlLnawrtPyGasiFqskE~SsVlsCDIS 683 (705)
T KOG0639|consen 608 AVGMENSNVEVLHTSKP-EKYQLHLHESCVLSLKFAYCGKWFVSTG---KDNLLNAWRTPYGASIFQSKESSSVLSCDIS 683 (705)
T ss_pred eeecccCcEEEEecCCc-cceeecccccEEEEEEecccCceeeecC---chhhhhhccCccccceeeccccCcceeeeec
Confidence 99999999988886544 3456667999999999999999665555 7999999999999999888899999999999
Q ss_pred CCCCeEEEEEecCCCcEEEEEC
Q 014934 387 KNVNELVSTHGYSQNQIIVWRY 408 (415)
Q Consensus 387 ~~~~~l~s~~g~~dg~I~vw~~ 408 (415)
.|.+++++ |+.|..-.||.+
T Consensus 684 ~ddkyIVT--GSGdkkATVYeV 703 (705)
T KOG0639|consen 684 FDDKYIVT--GSGDKKATVYEV 703 (705)
T ss_pred cCceEEEe--cCCCcceEEEEE
Confidence 99999999 777878888764
No 114
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=1.2e-22 Score=208.32 Aligned_cols=243 Identities=22% Similarity=0.385 Sum_probs=193.8
Q ss_pred CCCcceeEeecCC-C----cEEEEE-cCCeEEEEECCC---CC---eEEeEecCCCCCeEEEEEcCCC-CeEEEEECCCc
Q 014934 165 QDDFYLNLVDWSS-H----NVLAVG-LGNCVYLWNACS---SK---VTKLCDLGIDDSVCSVGWANRN-THLAVGTSHGK 231 (415)
Q Consensus 165 ~~~~~i~~l~ws~-~----~~la~~-~d~~V~iwd~~~---~~---~~~~~~~~~~~~V~~v~~sp~g-~~la~g~~dg~ 231 (415)
..+...+.++|++ + .+||.| .||.|.+||... +. ++..+. .|++.|..+.|++.. +.||+|+.+|.
T Consensus 62 ~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~-~h~G~V~gLDfN~~q~nlLASGa~~ge 140 (1049)
T KOG0307|consen 62 QSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKS-KHTGPVLGLDFNPFQGNLLASGADDGE 140 (1049)
T ss_pred cccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhc-ccCCceeeeeccccCCceeeccCCCCc
Confidence 4455677899988 2 368887 479999999865 22 222222 789999999999965 59999999999
Q ss_pred EEEEECCCCeeeEEec--CCCccEEEEEee---CCEEEEEeCCCcEEEEECCCCCccEEEecccc--CCeEEEEEeCCC-
Q 014934 232 VQIWDASRCKRVRTME--GHRLRVGALAWS---SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHK--SEVCGLKWSYDN- 303 (415)
Q Consensus 232 V~iwd~~~~~~~~~l~--~h~~~V~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~--~~V~~l~~spdg- 303 (415)
|.|||+...+.-.++. .....|.+++|+ .++|++++.+|.+.|||+|..+ .+..+..|. ..+..|+|+|+.
T Consensus 141 I~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~-pii~ls~~~~~~~~S~l~WhP~~a 219 (1049)
T KOG0307|consen 141 ILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKK-PIIKLSDTPGRMHCSVLAWHPDHA 219 (1049)
T ss_pred EEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCC-cccccccCCCccceeeeeeCCCCc
Confidence 9999998754333331 246789999999 5899999999999999999886 444454443 357899999976
Q ss_pred CEEEEEeCCC---cEEEEECCCC-ceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeC-CC
Q 014934 304 RELASGGNDN---RLFVWNQHST-QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDT-GS 378 (415)
Q Consensus 304 ~~lasg~~dg---~I~iwd~~~~-~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~-~~ 378 (415)
..|+++++|. .|.+||++.. .++..+++|+.+|.++.|++.+..+|+++| .|+.|.+||.++|+.+..+.. ++
T Consensus 220 Tql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsg--kD~~ii~wN~~tgEvl~~~p~~~n 297 (1049)
T KOG0307|consen 220 TQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSG--KDNRIICWNPNTGEVLGELPAQGN 297 (1049)
T ss_pred eeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhccc--CCCCeeEecCCCceEeeecCCCCc
Confidence 4566666654 5999999864 678888999999999999999977888887 999999999999999999974 67
Q ss_pred CEEEEEECCCCCeEEEEEecCCCcEEEEECCCCc
Q 014934 379 QVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMS 412 (415)
Q Consensus 379 ~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~ 412 (415)
.+..+.|+|...-++++ .+-||.|.|+.+.+..
T Consensus 298 W~fdv~w~pr~P~~~A~-asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 298 WCFDVQWCPRNPSVMAA-ASFDGKISIYSLQGTD 330 (1049)
T ss_pred ceeeeeecCCCcchhhh-heeccceeeeeeecCC
Confidence 79999999998855554 5789999999987654
No 115
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=2e-21 Score=182.16 Aligned_cols=221 Identities=18% Similarity=0.261 Sum_probs=182.7
Q ss_pred CCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEecCCCccEEEEEee--CCEE
Q 014934 186 GNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWS--SSLL 263 (415)
Q Consensus 186 d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l 263 (415)
...|.+|.+......... .--.+.|.+++-+|+|.+|+.|+..|.+++|.+.+|..+..+.+|-..|+|+.|+ +.+|
T Consensus 60 rp~l~vw~i~k~~~~~q~-~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~i 138 (476)
T KOG0646|consen 60 RPLLHVWEILKKDQVVQY-IVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHI 138 (476)
T ss_pred CccccccccCchhhhhhh-cccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEE
Confidence 357899988665443322 1335889999999999999999999999999999999999999999999999998 6899
Q ss_pred EEEeCCCcEEEEECCC--------CCccEEEeccccCCeEEEEEeCC--CCEEEEEeCCCcEEEEECCCCceeEEeccCC
Q 014934 264 SSGSRDKSILQRDIRA--------QEDFVSKLSGHKSEVCGLKWSYD--NRELASGGNDNRLFVWNQHSTQPVLKYCEHT 333 (415)
Q Consensus 264 ~sgs~dg~I~iwd~~~--------~~~~~~~~~~h~~~V~~l~~spd--g~~lasg~~dg~I~iwd~~~~~~~~~~~~h~ 333 (415)
++|+.||.|.+|++.. ...+.+.+..|.-.|+.+...+. ..+|++++.|.++++||+..+..+.++ ...
T Consensus 139 iTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti-~fp 217 (476)
T KOG0646|consen 139 ITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTI-TFP 217 (476)
T ss_pred EecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEE-ecC
Confidence 9999999999998642 22467889999999999998764 467999999999999999999988887 456
Q ss_pred CcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCc----------------EEEEe-eCC--CCEEEEEECCCCCeEEE
Q 014934 334 AAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNT----------------HLSCM-DTG--SQVCNLVWSKNVNELVS 394 (415)
Q Consensus 334 ~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~----------------~~~~~-~~~--~~V~~l~~s~~~~~l~s 394 (415)
..+.+++..|.++.+++ |+.+|.|.+.++..-. .+..+ .+. +.|++++.+-||..|++
T Consensus 218 ~si~av~lDpae~~~yi---Gt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlS 294 (476)
T KOG0646|consen 218 SSIKAVALDPAERVVYI---GTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLS 294 (476)
T ss_pred CcceeEEEcccccEEEe---cCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEe
Confidence 78999999999885555 4489999998875422 11222 133 48999999999999999
Q ss_pred EEecCCCcEEEEECCCCcc
Q 014934 395 THGYSQNQIIVWRYPTMSK 413 (415)
Q Consensus 395 ~~g~~dg~I~vw~~~s~~~ 413 (415)
|+.||+++|||+.+.+.
T Consensus 295 --Gd~dg~VcvWdi~S~Q~ 311 (476)
T KOG0646|consen 295 --GDEDGKVCVWDIYSKQC 311 (476)
T ss_pred --eCCCCCEEEEecchHHH
Confidence 99999999999987553
No 116
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=8.5e-21 Score=169.84 Aligned_cols=233 Identities=14% Similarity=0.223 Sum_probs=183.5
Q ss_pred ceeEeecCC--CcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEe
Q 014934 169 YLNLVDWSS--HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTM 246 (415)
Q Consensus 169 ~i~~l~ws~--~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l 246 (415)
+|..|.|+| +.+|+++.||.+++|+....+....+ .|..++.+++|.+ ...+++|+.||.|+.+|+.++... .+
T Consensus 15 ~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~--~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~-~i 90 (323)
T KOG1036|consen 15 GISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF--KHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNED-QI 90 (323)
T ss_pred ceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe--ecCCceeeeeccC-CceEEEeccCceEEEEEecCCcce-ee
Confidence 588999998 67888889999999999888655544 6789999999986 567899999999999999987654 45
Q ss_pred cCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCc
Q 014934 247 EGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQ 324 (415)
Q Consensus 247 ~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~ 324 (415)
..|...|.||... .+.+++|+.|++|++||.|... ....+.. ...|.++.. .|+.|++|+.|..|.+||+++..
T Consensus 91 gth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~-~~~~~d~-~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~ 166 (323)
T KOG1036|consen 91 GTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKV-VVGTFDQ-GKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNLD 166 (323)
T ss_pred ccCCCceEEEEeeccCCeEEEcccCccEEEEeccccc-ccccccc-CceEEEEec--cCCEEEEeecCceEEEEEccccc
Confidence 5699999999999 5899999999999999999744 2333332 337877765 47899999999999999999875
Q ss_pred eeEEec--cCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcE----EEEee----------CCCCEEEEEECCC
Q 014934 325 PVLKYC--EHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTH----LSCMD----------TGSQVCNLVWSKN 388 (415)
Q Consensus 325 ~~~~~~--~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~----~~~~~----------~~~~V~~l~~s~~ 388 (415)
...+.. .-+..+.+|++-|.+...+++. -||.|.+=.+...+. ...++ -..+|.+++|+|-
T Consensus 167 ~~~q~reS~lkyqtR~v~~~pn~eGy~~sS---ieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~ 243 (323)
T KOG1036|consen 167 EPFQRRESSLKYQTRCVALVPNGEGYVVSS---IEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPI 243 (323)
T ss_pred chhhhccccceeEEEEEEEecCCCceEEEe---ecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccc
Confidence 444322 3445689999999887666654 799988776665421 11222 1246899999999
Q ss_pred CCeEEEEEecCCCcEEEEECCCCccc
Q 014934 389 VNELVSTHGYSQNQIIVWRYPTMSKV 414 (415)
Q Consensus 389 ~~~l~s~~g~~dg~I~vw~~~s~~~l 414 (415)
...|++ |++||.|.+||..+.+++
T Consensus 244 ~~tfaT--gGsDG~V~~Wd~~~rKrl 267 (323)
T KOG1036|consen 244 HGTFAT--GGSDGIVNIWDLFNRKRL 267 (323)
T ss_pred cceEEe--cCCCceEEEccCcchhhh
Confidence 999999 889999999999876654
No 117
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=1.1e-21 Score=190.37 Aligned_cols=226 Identities=22% Similarity=0.311 Sum_probs=187.5
Q ss_pred CcEEEEEcCCeEEEEECCCCC--eEEeEecCCCCCeEEEEE-cCCCCeEEEEECCCcEEEEECCCCe--eeEE-------
Q 014934 178 HNVLAVGLGNCVYLWNACSSK--VTKLCDLGIDDSVCSVGW-ANRNTHLAVGTSHGKVQIWDASRCK--RVRT------- 245 (415)
Q Consensus 178 ~~~la~~~d~~V~iwd~~~~~--~~~~~~~~~~~~V~~v~~-sp~g~~la~g~~dg~V~iwd~~~~~--~~~~------- 245 (415)
..+|.++.|.+|++|+...+. ++..+. .|.+.|.|+++ .++...+|+|+-|+.|.|||+.++. .+..
T Consensus 86 ~tlIS~SsDtTVK~W~~~~~~~~c~stir-~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~ 164 (735)
T KOG0308|consen 86 KTLISASSDTTVKVWNAHKDNTFCMSTIR-THKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVN 164 (735)
T ss_pred CceEEecCCceEEEeecccCcchhHhhhh-cccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccc
Confidence 467888899999999998874 334443 79999999999 7788999999999999999998762 2222
Q ss_pred -ec-CCCccEEEEEeeC--CEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECC
Q 014934 246 -ME-GHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQH 321 (415)
Q Consensus 246 -l~-~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~ 321 (415)
+. ++...|.+++.++ ..+++|+..+.|++||.++..+ +..+.||...|..+..++||+.+++++.||+|++||+.
T Consensus 165 sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~k-imkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLg 243 (735)
T KOG0308|consen 165 SLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKK-IMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLG 243 (735)
T ss_pred cCCCCCccceeeeecCCcceEEEecCcccceEEeccccccc-eeeeeccccceEEEEEcCCCCeEeecCCCceEEeeecc
Confidence 22 7888999999995 4999999999999999999984 77888999999999999999999999999999999999
Q ss_pred CCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCC-cEEEEeeCCCCEEEEEECCCCCeEEEEEecCC
Q 014934 322 STQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTN-THLSCMDTGSQVCNLVWSKNVNELVSTHGYSQ 400 (415)
Q Consensus 322 ~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~-~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~d 400 (415)
..+++.++..|...|+++..+|.-. .+.+|+ .|+.|..=|+++. ++....+...+|..+..+.+.+-+-+ +..|
T Consensus 244 qQrCl~T~~vH~e~VWaL~~~~sf~-~vYsG~--rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~Wv--tTtd 318 (735)
T KOG0308|consen 244 QQRCLATYIVHKEGVWALQSSPSFT-HVYSGG--RDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWV--TTTD 318 (735)
T ss_pred ccceeeeEEeccCceEEEeeCCCcc-eEEecC--CCCcEEecccCCchhheEeecCCCchhhhhhccccCCcee--eecc
Confidence 9999999999999999999998876 555565 8999999999984 44444556777888777755544333 3468
Q ss_pred CcEEEEECCC
Q 014934 401 NQIIVWRYPT 410 (415)
Q Consensus 401 g~I~vw~~~s 410 (415)
+.|.-|..+-
T Consensus 319 s~I~rW~~~~ 328 (735)
T KOG0308|consen 319 SSIKRWKLEP 328 (735)
T ss_pred ccceecCCcc
Confidence 8899887653
No 118
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.88 E-value=4.5e-20 Score=174.47 Aligned_cols=233 Identities=19% Similarity=0.289 Sum_probs=192.3
Q ss_pred ceeEeecCC--CcEEEEEcCCeEEEEECCCCCeEEeEec---CCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeee
Q 014934 169 YLNLVDWSS--HNVLAVGLGNCVYLWNACSSKVTKLCDL---GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRV 243 (415)
Q Consensus 169 ~i~~l~ws~--~~~la~~~d~~V~iwd~~~~~~~~~~~~---~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~ 243 (415)
.+....|+| .+++.....+.+++|+.+++.+.+...+ .....|.|++|.++|+ +++|..+|.|.||+..+.+..
T Consensus 202 ~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~ 280 (626)
T KOG2106|consen 202 VVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRIS 280 (626)
T ss_pred eEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEE
Confidence 466788999 6788888889999999999887665543 3357899999999998 678999999999999988888
Q ss_pred EEecCCCccEEEEEee-CCEEEEEeCCCcEEEEECCCCC---------------------------------------cc
Q 014934 244 RTMEGHRLRVGALAWS-SSLLSSGSRDKSILQRDIRAQE---------------------------------------DF 283 (415)
Q Consensus 244 ~~l~~h~~~V~~l~~~-~~~l~sgs~dg~I~iwd~~~~~---------------------------------------~~ 283 (415)
+....|.+.|.+++.- ...|++|+.|+.|..||-.-.. ..
T Consensus 281 k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f 360 (626)
T KOG2106|consen 281 KQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGF 360 (626)
T ss_pred eEeeecCCceEEEEEecCccEeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCc
Confidence 7777999999999987 5677779999999999832111 01
Q ss_pred EEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEE
Q 014934 284 VSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFW 363 (415)
Q Consensus 284 ~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iw 363 (415)
.....+|..+..+++.+|+.++|++++.|+.+++|+ ..+++... .-..++.++.|+|.| .+|.|. ..|...+.
T Consensus 361 ~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~-~~~d~~~~~~fhpsg--~va~Gt--~~G~w~V~ 433 (626)
T KOG2106|consen 361 TLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTK-IIEDPAECADFHPSG--VVAVGT--ATGRWFVL 433 (626)
T ss_pred eEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEE-EecCceeEeeccCcc--eEEEee--ccceEEEE
Confidence 122457888999999999999999999999999999 44555543 345678999999998 566654 89999999
Q ss_pred ECCCCcEEEEeeCCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCC
Q 014934 364 NTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTM 411 (415)
Q Consensus 364 d~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~ 411 (415)
|.++...+.......++..+.|+|+|.+|+. |+.|+.|+||.+...
T Consensus 434 d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAv--gs~d~~iyiy~Vs~~ 479 (626)
T KOG2106|consen 434 DTETQDLVTIHTDNEQLSVVRYSPDGAFLAV--GSHDNHIYIYRVSAN 479 (626)
T ss_pred ecccceeEEEEecCCceEEEEEcCCCCEEEE--ecCCCeEEEEEECCC
Confidence 9999777766656899999999999999999 899999999998754
No 119
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.88 E-value=2.2e-21 Score=177.53 Aligned_cols=199 Identities=24% Similarity=0.405 Sum_probs=162.9
Q ss_pred CCCCCeEEEEEcCCC--CeEEEEECCCcEEEEECCC----------------CeeeEEecCCCccEEEEEeeC---CEEE
Q 014934 206 GIDDSVCSVGWANRN--THLAVGTSHGKVQIWDASR----------------CKRVRTMEGHRLRVGALAWSS---SLLS 264 (415)
Q Consensus 206 ~~~~~V~~v~~sp~g--~~la~g~~dg~V~iwd~~~----------------~~~~~~l~~h~~~V~~l~~~~---~~l~ 264 (415)
.|.+.+.-+.-++-| .+.|+-+..|.|+|||+.. .+++.++.+|...-.+|+|++ ..|+
T Consensus 149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Ll 228 (440)
T KOG0302|consen 149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLL 228 (440)
T ss_pred ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccc
Confidence 666777777777654 4566667889999999742 356778889999999999996 5688
Q ss_pred EEeCCCcEEEEECCCCCcc--EEEeccccCCeEEEEEeCC-CCEEEEEeCCCcEEEEECCCC---ceeEEeccCCCcEEE
Q 014934 265 SGSRDKSILQRDIRAQEDF--VSKLSGHKSEVCGLKWSYD-NRELASGGNDNRLFVWNQHST---QPVLKYCEHTAAVKA 338 (415)
Q Consensus 265 sgs~dg~I~iwd~~~~~~~--~~~~~~h~~~V~~l~~spd-g~~lasg~~dg~I~iwd~~~~---~~~~~~~~h~~~V~~ 338 (415)
+|..-+.|++|...++.-. ...+.+|...|..|+|||. ...||+|+-||.|+|||++.+ .++. .+.|.+.|+.
T Consensus 229 sGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~-~kAh~sDVNV 307 (440)
T KOG0302|consen 229 SGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVS-TKAHNSDVNV 307 (440)
T ss_pred cCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeE-eeccCCceee
Confidence 9988999999998876521 2345689999999999994 568999999999999999987 3343 3789999999
Q ss_pred EEEcCCCCcEEEEEcCCCCCeEEEEECCC---CcEEEEee-CCCCEEEEEECCCCCeEEEEEecCCCcEEEEECC
Q 014934 339 IAWSPHLHGLLASGGGTADRCIRFWNTTT---NTHLSCMD-TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYP 409 (415)
Q Consensus 339 l~~sp~~~~llasggg~~d~~I~iwd~~t---~~~~~~~~-~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~ 409 (415)
|.|+..-. +||+|+ .||+++|||+++ ++++..++ |..+|+++.|+|...-.+.+ ++.|++|.+||+.
T Consensus 308 ISWnr~~~-lLasG~--DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaa-sg~D~QitiWDls 378 (440)
T KOG0302|consen 308 ISWNRREP-LLASGG--DDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAA-SGEDNQITIWDLS 378 (440)
T ss_pred EEccCCcc-eeeecC--CCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEe-ccCCCcEEEEEee
Confidence 99999877 999998 999999999986 56677776 78999999999987655554 5689999999985
No 120
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.88 E-value=1.1e-21 Score=200.37 Aligned_cols=197 Identities=26% Similarity=0.432 Sum_probs=167.1
Q ss_pred CCCeEEEEEcCCCCeEEEEE--CCCcEEEEECCC------------CeeeEEecCCCccEEEEEee--CCEEEEEeCCCc
Q 014934 208 DDSVCSVGWANRNTHLAVGT--SHGKVQIWDASR------------CKRVRTMEGHRLRVGALAWS--SSLLSSGSRDKS 271 (415)
Q Consensus 208 ~~~V~~v~~sp~g~~la~g~--~dg~V~iwd~~~------------~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~ 271 (415)
...|.+|..+|+|..+|+|+ .||.++||+.+. .+.+.++..|.+.|.|+.|+ +.+|++|+.|+.
T Consensus 13 ~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~ 92 (942)
T KOG0973|consen 13 EKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRL 92 (942)
T ss_pred CeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcce
Confidence 56799999999999999999 899999998642 34566777899999999998 689999999999
Q ss_pred EEEEECCC------C-----C------ccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCC
Q 014934 272 ILQRDIRA------Q-----E------DFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTA 334 (415)
Q Consensus 272 I~iwd~~~------~-----~------~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~ 334 (415)
|.+|+... . . +.+..+.+|...|..++|+|++.+||+++.|++|.|||.++.+.+..+++|..
T Consensus 93 v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s 172 (942)
T KOG0973|consen 93 VMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQS 172 (942)
T ss_pred EEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeecccc
Confidence 99999772 0 0 24667889999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee-------CCCCEEEEEECCCCCeEEEEEecCCC--cEEE
Q 014934 335 AVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-------TGSQVCNLVWSKNVNELVSTHGYSQN--QIIV 405 (415)
Q Consensus 335 ~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~-------~~~~V~~l~~s~~~~~l~s~~g~~dg--~I~v 405 (415)
.|..+.|.|-|+ +||+-+ .|++|+||++.+-...+.+. .......+.|||||.+|++.++...+ ++.|
T Consensus 173 ~VKGvs~DP~Gk-y~ASqs--dDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~I 249 (942)
T KOG0973|consen 173 LVKGVSWDPIGK-YFASQS--DDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAI 249 (942)
T ss_pred cccceEECCccC-eeeeec--CCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEE
Confidence 999999999998 666665 79999999988766666664 23458899999999999998764432 4555
Q ss_pred EE
Q 014934 406 WR 407 (415)
Q Consensus 406 w~ 407 (415)
.+
T Consensus 250 ie 251 (942)
T KOG0973|consen 250 IE 251 (942)
T ss_pred Ee
Confidence 43
No 121
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=4.4e-21 Score=178.93 Aligned_cols=229 Identities=21% Similarity=0.376 Sum_probs=177.4
Q ss_pred CcEEEEEc--CC----eEEEEECCCCCeEEeEecCCCCCeEEEEEcC-------CCCeEEEEECCCcEEEEECCCCe---
Q 014934 178 HNVLAVGL--GN----CVYLWNACSSKVTKLCDLGIDDSVCSVGWAN-------RNTHLAVGTSHGKVQIWDASRCK--- 241 (415)
Q Consensus 178 ~~~la~~~--d~----~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp-------~g~~la~g~~dg~V~iwd~~~~~--- 241 (415)
.++|+++. ++ .||+|+-....+..-..+--.....|++|.. .|+++|+|+.+..|.|||+.-..
T Consensus 137 DnlIl~ar~eddvs~LEvYVyn~~e~nlYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~ 216 (463)
T KOG0270|consen 137 DNLILCARNEDDVSYLEVYVYNEEEENLYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVL 216 (463)
T ss_pred CcEEEEeeccCCceEEEEEEEcCCCcceeEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccc
Confidence 67777773 22 4788876543322111111134557888853 36799999999999999974211
Q ss_pred ------------------eeEEecCCCccEEEEEee---CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEe
Q 014934 242 ------------------RVRTMEGHRLRVGALAWS---SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWS 300 (415)
Q Consensus 242 ------------------~~~~l~~h~~~V~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s 300 (415)
.-....+|+..|.+|+|+ .++|++||.|.+|++||+.+++ +...+..|...|.++.|+
T Consensus 217 P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~-p~~s~~~~~k~Vq~l~wh 295 (463)
T KOG0270|consen 217 PCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGK-PKSSITHHGKKVQTLEWH 295 (463)
T ss_pred cceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCC-cceehhhcCCceeEEEec
Confidence 001123699999999998 4899999999999999999998 677888899999999999
Q ss_pred C-CCCEEEEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCC-cEEEEee-CC
Q 014934 301 Y-DNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTN-THLSCMD-TG 377 (415)
Q Consensus 301 p-dg~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~-~~~~~~~-~~ 377 (415)
| ....|++|+.|++|.+.|.+........-.-.+.|-.++|.|.....+.++. .||+++-+|++.. +++.++. |.
T Consensus 296 ~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~t--ddG~v~~~D~R~~~~~vwt~~AHd 373 (463)
T KOG0270|consen 296 PYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVST--DDGTVYYFDIRNPGKPVWTLKAHD 373 (463)
T ss_pred CCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEec--CCceEEeeecCCCCCceeEEEecc
Confidence 8 5678999999999999999953332222234578999999999987777765 8999999999874 8888886 78
Q ss_pred CCEEEEEECCCCCeEEEEEecCCCcEEEEECCC
Q 014934 378 SQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPT 410 (415)
Q Consensus 378 ~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s 410 (415)
..|.+++++..-..++++ ++.|+.+++|++.-
T Consensus 374 ~~ISgl~~n~~~p~~l~t-~s~d~~Vklw~~~~ 405 (463)
T KOG0270|consen 374 DEISGLSVNIQTPGLLST-ASTDKVVKLWKFDV 405 (463)
T ss_pred CCcceEEecCCCCcceee-ccccceEEEEeecC
Confidence 899999999998888877 77899999999864
No 122
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.88 E-value=2.8e-21 Score=188.71 Aligned_cols=232 Identities=20% Similarity=0.325 Sum_probs=190.1
Q ss_pred eeEeecCCCc-EEEEEcCCeEEEEECCCCCeEEeEec-CCCCCeEE-EEEcC-CCCeEEEEECCCcEEEEECCCCeeeEE
Q 014934 170 LNLVDWSSHN-VLAVGLGNCVYLWNACSSKVTKLCDL-GIDDSVCS-VGWAN-RNTHLAVGTSHGKVQIWDASRCKRVRT 245 (415)
Q Consensus 170 i~~l~ws~~~-~la~~~d~~V~iwd~~~~~~~~~~~~-~~~~~V~~-v~~sp-~g~~la~g~~dg~V~iwd~~~~~~~~~ 245 (415)
+..++..++. ++.++.|+++++|+-..++......+ +|.+.|.+ +++.+ ++-.|++|+.|+.|.+|...+..++.+
T Consensus 17 Vr~v~~~~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~ 96 (745)
T KOG0301|consen 17 VRAVAVTDGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYT 96 (745)
T ss_pred hheeEecCCeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhh
Confidence 3445555544 45555689999999888776664433 56666666 88875 555799999999999999999999999
Q ss_pred ecCCCccEEEEEee-CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCc
Q 014934 246 MEGHRLRVGALAWS-SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQ 324 (415)
Q Consensus 246 l~~h~~~V~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~ 324 (415)
+.+|...|.+++.. ...+++||.|.++++|-+.. +...+.+|...|++++.-|++ .++||+.|..|++|.- ++
T Consensus 97 LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~~~---l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~ 170 (745)
T KOG0301|consen 97 LKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRIGE---LVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GT 170 (745)
T ss_pred hhccccceeeeecCCcCceEecccccceEEecchh---hhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC--Cc
Confidence 99999999999965 45699999999999998754 445689999999999999987 8899999999999986 77
Q ss_pred eeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEe-eCCCCEEEEEECCCCCeEEEEEecCCCcE
Q 014934 325 PVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCM-DTGSQVCNLVWSKNVNELVSTHGYSQNQI 403 (415)
Q Consensus 325 ~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~-~~~~~V~~l~~s~~~~~l~s~~g~~dg~I 403 (415)
.+.+|.+|+..|+++++-++++ ++ +++ .||.|++|++ +|+++.+. .|.+.|+++....++..+++ .++|+++
T Consensus 171 ~l~tf~gHtD~VRgL~vl~~~~-fl-Scs--NDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs--~gEDrtl 243 (745)
T KOG0301|consen 171 LLKTFSGHTDCVRGLAVLDDSH-FL-SCS--NDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVS--TGEDRTL 243 (745)
T ss_pred hhhhhccchhheeeeEEecCCC-eE-eec--CCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEE--ecCCceE
Confidence 8899999999999999999865 44 444 7999999999 66666655 47788999998888888888 4699999
Q ss_pred EEEECCCCccc
Q 014934 404 IVWRYPTMSKV 414 (415)
Q Consensus 404 ~vw~~~s~~~l 414 (415)
+||+.....|.
T Consensus 244 riW~~~e~~q~ 254 (745)
T KOG0301|consen 244 RIWKKDECVQV 254 (745)
T ss_pred EEeecCceEEE
Confidence 99998755543
No 123
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.88 E-value=1.8e-20 Score=174.27 Aligned_cols=234 Identities=14% Similarity=0.205 Sum_probs=190.4
Q ss_pred cceeEeecCC-C-cEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEE
Q 014934 168 FYLNLVDWSS-H-NVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRT 245 (415)
Q Consensus 168 ~~i~~l~ws~-~-~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~ 245 (415)
..|+.+.+++ . .++.++.|..|++|............ .|.++|+.+..+|.|.||++++.||...+.|++++..+..
T Consensus 262 kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~-~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~ 340 (506)
T KOG0289|consen 262 KKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSR-PHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTV 340 (506)
T ss_pred eEEEEEEeccchhheeecCCcceEEeeccccccCccccc-cccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEE
Confidence 3478888998 3 34444468899999987776555544 7899999999999999999999999999999999988776
Q ss_pred ecC--CCccEEEEEeeC--CEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECC
Q 014934 246 MEG--HRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQH 321 (415)
Q Consensus 246 l~~--h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~ 321 (415)
... ..-.+++.+|+| -+|.+|..||.|++||+..+. .+..+.+|.++|..++|+.+|-+||++++|+.|++||++
T Consensus 341 vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~-~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLR 419 (506)
T KOG0289|consen 341 VSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQT-NVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLR 419 (506)
T ss_pred EeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCcc-ccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEeh
Confidence 653 334589999994 688899999999999999988 588899999999999999999999999999999999999
Q ss_pred CCceeEEecc-CCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCC--CcEEEEee-CCCCEEEEEECCCCCeEEEEEe
Q 014934 322 STQPVLKYCE-HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTT--NTHLSCMD-TGSQVCNLVWSKNVNELVSTHG 397 (415)
Q Consensus 322 ~~~~~~~~~~-h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t--~~~~~~~~-~~~~V~~l~~s~~~~~l~s~~g 397 (415)
.-+...++.- ....|.++.|.+.|.+|.+. | .|=.|++++-.+ ..++..+. +.+..+++.|..+.+++++ +
T Consensus 420 Kl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~-g--~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s--~ 494 (506)
T KOG0289|consen 420 KLKNFKTIQLDEKKEVNSLSFDQSGTYLGIA-G--SDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLAS--T 494 (506)
T ss_pred hhcccceeeccccccceeEEEcCCCCeEEee-c--ceeEEEEEecccccceeeehhhhcccccceeeecccceEEee--c
Confidence 8877777653 23479999999999866554 3 577777776443 33444443 4558899999999999999 7
Q ss_pred cCCCcEEEEEC
Q 014934 398 YSQNQIIVWRY 408 (415)
Q Consensus 398 ~~dg~I~vw~~ 408 (415)
+.|..++++.+
T Consensus 495 smd~~l~~~a~ 505 (506)
T KOG0289|consen 495 SMDAILRLYAL 505 (506)
T ss_pred cchhheEEeec
Confidence 78888888765
No 124
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=3.3e-20 Score=166.08 Aligned_cols=226 Identities=18% Similarity=0.279 Sum_probs=184.4
Q ss_pred CcceeEeecCC-CcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEE
Q 014934 167 DFYLNLVDWSS-HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRT 245 (415)
Q Consensus 167 ~~~i~~l~ws~-~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~ 245 (415)
+-.+.+.+|.+ ..++..+.|++|+.+|+.++....+. .|...|.||..++....+++|+.|++|++||......+..
T Consensus 54 ~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~~ig--th~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~ 131 (323)
T KOG1036|consen 54 GAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNEDQIG--THDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGT 131 (323)
T ss_pred CCceeeeeccCCceEEEeccCceEEEEEecCCcceeec--cCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccc
Confidence 33466677777 55666668999999999999877666 6889999999999888999999999999999987555555
Q ss_pred ecCCCccEEEEEeeCCEEEEEeCCCcEEEEECCCCCccEEE-eccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCC-
Q 014934 246 MEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSK-LSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHST- 323 (415)
Q Consensus 246 l~~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~-~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~- 323 (415)
+. ....|.++...++.|++|+.|..+.+||+|+.....+. -..-+-.+.++++-|++.-+|+++-||+|.+=.+...
T Consensus 132 ~d-~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~ 210 (323)
T KOG1036|consen 132 FD-QGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSE 210 (323)
T ss_pred cc-cCceEEEEeccCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCch
Confidence 54 34589999999999999999999999999987754322 2234567999999999888999999999988666554
Q ss_pred ---ceeEEeccCC---------CcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeC-CCCEEEEEECCCCC
Q 014934 324 ---QPVLKYCEHT---------AAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDT-GSQVCNLVWSKNVN 390 (415)
Q Consensus 324 ---~~~~~~~~h~---------~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~-~~~V~~l~~s~~~~ 390 (415)
+.-..|+.|. .+|++|+|+|- ...|+||| .||.|.+||+.+.+.+..+.. ...|..++|+.+|.
T Consensus 211 ~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~-~~tfaTgG--sDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~ 287 (323)
T KOG1036|consen 211 EAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPI-HGTFATGG--SDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGS 287 (323)
T ss_pred HHhhhceeEEeeecccCCceEEEEeceeEeccc-cceEEecC--CCceEEEccCcchhhhhhccCCCCceEEEEeccCCC
Confidence 3344566664 37899999998 45899998 899999999999998888764 46799999999999
Q ss_pred eEEEEEec
Q 014934 391 ELVSTHGY 398 (415)
Q Consensus 391 ~l~s~~g~ 398 (415)
.||.++.+
T Consensus 288 ~LAia~sy 295 (323)
T KOG1036|consen 288 LLAIASSY 295 (323)
T ss_pred eEEEEech
Confidence 99986443
No 125
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=7.6e-20 Score=178.44 Aligned_cols=236 Identities=20% Similarity=0.315 Sum_probs=192.5
Q ss_pred ceeEeecCC-CcEEEEE-cCCeEEEEECCCCCe-EEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEE
Q 014934 169 YLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKV-TKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRT 245 (415)
Q Consensus 169 ~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~~-~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~ 245 (415)
.|.+++++. .+.||++ .+|.|.||++..+=. ..++..+....|-+++|+ +|..|.+.+.+|.|.-||+.+.+.+..
T Consensus 27 ~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~~~ 105 (691)
T KOG2048|consen 27 EIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQKYN 105 (691)
T ss_pred ceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCceeEE
Confidence 378999998 7889999 689999999988643 333443557889999999 555677788999999999999999999
Q ss_pred ecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCcc-EEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCC
Q 014934 246 MEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDF-VSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHS 322 (415)
Q Consensus 246 l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~-~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~ 322 (415)
+....+.|++++.+ ...++.|+.||.++.+++..+.-. ...+...++.|.+++|+|++..||.|+.||.|++||...
T Consensus 106 ~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~ 185 (691)
T KOG2048|consen 106 IDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKS 185 (691)
T ss_pred ecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCC
Confidence 99999999999999 479999999997777777655411 223334568899999999999999999999999999999
Q ss_pred CceeEEec-------c-CCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee-CCCCEEEEEECCCCCeEE
Q 014934 323 TQPVLKYC-------E-HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKNVNELV 393 (415)
Q Consensus 323 ~~~~~~~~-------~-h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~-~~~~V~~l~~s~~~~~l~ 393 (415)
+..++... . ...-|+++.|-.++ .+++|. .-|+|.+||...|.+++.+. +...|.+++..++++.++
T Consensus 186 ~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~--tI~sgD--S~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vf 261 (691)
T KOG2048|consen 186 GQTLHIITMQLDRLSKREPTIVWSVLFLRDS--TIASGD--SAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVF 261 (691)
T ss_pred CceEEEeeecccccccCCceEEEEEEEeecC--cEEEec--CCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEE
Confidence 98776221 1 23347788887664 788876 78999999999999998876 778999999999999999
Q ss_pred EEEecCCCcEEEEECCCC
Q 014934 394 STHGYSQNQIIVWRYPTM 411 (415)
Q Consensus 394 s~~g~~dg~I~vw~~~s~ 411 (415)
+ ++.|++|.-|...+.
T Consensus 262 s--aGvd~~ii~~~~~~~ 277 (691)
T KOG2048|consen 262 S--AGVDPKIIQYSLTTN 277 (691)
T ss_pred E--ccCCCceEEEEecCC
Confidence 8 668999888876654
No 126
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=2.1e-22 Score=197.19 Aligned_cols=215 Identities=21% Similarity=0.389 Sum_probs=190.4
Q ss_pred CCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEecCCCccEEEEEee--CCEE
Q 014934 186 GNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWS--SSLL 263 (415)
Q Consensus 186 d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l 263 (415)
...+++|+.+.. ..|...|.++..-..++.+++|+.|-.+-+|.+.....+..+.+|..+|-++.|+ ..+|
T Consensus 13 ~t~Lr~~~~~~~-------~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~Ll 85 (825)
T KOG0267|consen 13 ATKLRVWDTREF-------VAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLL 85 (825)
T ss_pred eeccccccchhh-------hhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhh
Confidence 445667765321 1567788888887778899999999999999998888888899999999999999 4688
Q ss_pred EEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcC
Q 014934 264 SSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSP 343 (415)
Q Consensus 264 ~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp 343 (415)
+.|+.+|+|++||+.... .++++.+|...++++.|+|-+.++|+|+.|..+++||.+..-+.+.+.+|...|..++|+|
T Consensus 86 aagsasgtiK~wDleeAk-~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP 164 (825)
T KOG0267|consen 86 AAGSASGTIKVWDLEEAK-IVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSP 164 (825)
T ss_pred cccccCCceeeeehhhhh-hhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecC
Confidence 999999999999999876 6889999999999999999999999999999999999998889999999999999999999
Q ss_pred CCCcEEEEEcCCCCCeEEEEECCCCcEEEEee-CCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCCcc
Q 014934 344 HLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSK 413 (415)
Q Consensus 344 ~~~~llasggg~~d~~I~iwd~~t~~~~~~~~-~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~~ 413 (415)
+|+ ++++++ +|..++|||...|+.+..+. |...+..+.|+|..-.++. |+.|+.+++||+++.+-
T Consensus 165 ~Gr-~v~~g~--ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~--Gs~d~tv~f~dletfe~ 230 (825)
T KOG0267|consen 165 DGR-WVASGG--EDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAP--GSSDRTVRFWDLETFEV 230 (825)
T ss_pred CCc-eeeccC--CcceeeeecccccccccccccccccccccccCchhhhhcc--CCCCceeeeeccceeEE
Confidence 998 777776 79999999999999999998 7788999999999877777 89999999999987553
No 127
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=1.7e-20 Score=175.73 Aligned_cols=238 Identities=16% Similarity=0.289 Sum_probs=196.7
Q ss_pred CCcceeEeecCC-Cc-EEEEE-cCCeEEEEECCCCCeEEeEec-CC-CCCeEEEEEcCCCCeEEEEECCCcEEEEECCCC
Q 014934 166 DDFYLNLVDWSS-HN-VLAVG-LGNCVYLWNACSSKVTKLCDL-GI-DDSVCSVGWANRNTHLAVGTSHGKVQIWDASRC 240 (415)
Q Consensus 166 ~~~~i~~l~ws~-~~-~la~~-~d~~V~iwd~~~~~~~~~~~~-~~-~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~ 240 (415)
..|.|.+..|.| +. .++++ .....|.||+.+.++.++-.. ++ ...+.....++++++||+.+..|.|.|....++
T Consensus 256 ~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~ 335 (514)
T KOG2055|consen 256 EKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTK 335 (514)
T ss_pred ccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhh
Confidence 367788999999 44 44444 456799999999988777654 22 346788899999999999999999999999999
Q ss_pred eeeEEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCe--EEEEEeCCCCEEEEEeCCCcEE
Q 014934 241 KRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEV--CGLKWSYDNRELASGGNDNRLF 316 (415)
Q Consensus 241 ~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V--~~l~~spdg~~lasg~~dg~I~ 316 (415)
+.+.+++ -.+.|..++|+ +..|++++.+|.|++||++... +++.+.. .+.| ++++.++++.+||+|+..|.|.
T Consensus 336 eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~-~~~rf~D-~G~v~gts~~~S~ng~ylA~GS~~GiVN 412 (514)
T KOG2055|consen 336 ELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNS-CLHRFVD-DGSVHGTSLCISLNGSYLATGSDSGIVN 412 (514)
T ss_pred hhhheee-eccEEeeEEEecCCcEEEEEcCCceEEEEecCCcc-eEEEEee-cCccceeeeeecCCCceEEeccCcceEE
Confidence 9998887 57889999998 6788888899999999999985 5666553 3334 4566779999999999999999
Q ss_pred EEECCC------CceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeC----CCCEEEEEEC
Q 014934 317 VWNQHS------TQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDT----GSQVCNLVWS 386 (415)
Q Consensus 317 iwd~~~------~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~----~~~V~~l~~s 386 (415)
|||..+ .+|+..+..-..+|+.+.|+++.. +||.++...+..+|+-.+.+......+.. -+.|++++|+
T Consensus 413 IYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~q-iLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFS 491 (514)
T KOG2055|consen 413 IYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQ-ILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFS 491 (514)
T ss_pred EeccchhhccCCCCchhhhhhhheeeeeeeeCcchh-hhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEec
Confidence 999653 478888888888999999999987 77766655788999999998877766653 3569999999
Q ss_pred CCCCeEEEEEecCCCcEEEEECC
Q 014934 387 KNVNELVSTHGYSQNQIIVWRYP 409 (415)
Q Consensus 387 ~~~~~l~s~~g~~dg~I~vw~~~ 409 (415)
|.+.+|+. |..+|++.+|++.
T Consensus 492 P~sG~lAv--GNe~grv~l~kL~ 512 (514)
T KOG2055|consen 492 PNSGYLAV--GNEAGRVHLFKLH 512 (514)
T ss_pred CCCceEEe--ecCCCceeeEeec
Confidence 99999999 8999999999874
No 128
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=8.3e-21 Score=170.26 Aligned_cols=207 Identities=17% Similarity=0.340 Sum_probs=177.8
Q ss_pred EEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEecCCCccEEEEEee--CCEEEEEeCCCcEEEEE-
Q 014934 200 TKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRD- 276 (415)
Q Consensus 200 ~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd- 276 (415)
.+.+. +|.+.|..|+-......+.+++.|-+.+||.+++++++..+.+|.+.|++++|+ +.++++++.|++..||.
T Consensus 141 vre~~-GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~ 219 (481)
T KOG0300|consen 141 VRELE-GHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKA 219 (481)
T ss_pred hhhhc-ccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHH
Confidence 34443 899999999988777799999999999999999999999999999999999998 57899999999999997
Q ss_pred -----CCCCC---------------------------------ccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEE
Q 014934 277 -----IRAQE---------------------------------DFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVW 318 (415)
Q Consensus 277 -----~~~~~---------------------------------~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iw 318 (415)
+.... .++..+.+|...|.+..|-..|+.+++++.|.+..+|
T Consensus 220 av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlw 299 (481)
T KOG0300|consen 220 AVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLW 299 (481)
T ss_pred hhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceee
Confidence 21100 1455678999999999999999999999999999999
Q ss_pred ECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCc-EEEEee-CCCCEEEEEECCCCCeEEEEE
Q 014934 319 NQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNT-HLSCMD-TGSQVCNLVWSKNVNELVSTH 396 (415)
Q Consensus 319 d~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~-~~~~~~-~~~~V~~l~~s~~~~~l~s~~ 396 (415)
|+++++++..+.+|....+.++-+|.++ |+++++ .|.+.++||++..- .+..+. |...|+++.|..+.+ +++
T Consensus 300 DVEtge~v~~LtGHd~ELtHcstHptQr-LVvTsS--rDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~-vVS-- 373 (481)
T KOG0300|consen 300 DVETGEVVNILTGHDSELTHCSTHPTQR-LVVTSS--RDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDR-VVS-- 373 (481)
T ss_pred eeccCceeccccCcchhccccccCCcce-EEEEec--cCceeEeccchhhcceeeeecccccceeEEEEecCCc-eee--
Confidence 9999999999999999999999999987 888887 89999999998432 233333 567899999998876 566
Q ss_pred ecCCCcEEEEECCCCcc
Q 014934 397 GYSQNQIIVWRYPTMSK 413 (415)
Q Consensus 397 g~~dg~I~vw~~~s~~~ 413 (415)
|++|.+|+|||+..|..
T Consensus 374 gSDDrTvKvWdLrNMRs 390 (481)
T KOG0300|consen 374 GSDDRTVKVWDLRNMRS 390 (481)
T ss_pred cCCCceEEEeeeccccC
Confidence 88999999999999864
No 129
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.86 E-value=4.8e-19 Score=167.25 Aligned_cols=226 Identities=11% Similarity=0.088 Sum_probs=169.5
Q ss_pred cEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeE-EEEECCCcEEEEECCCCeeeEEecCCCccEEEE
Q 014934 179 NVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHL-AVGTSHGKVQIWDASRCKRVRTMEGHRLRVGAL 256 (415)
Q Consensus 179 ~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~l-a~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l 256 (415)
++++++ .++.|++||..+++....+. .+ ..+.+++|+|+|+.+ +++..++.|++||..+++.+..+..+.. +..+
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~-~~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~ 78 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFP-VG-QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELF 78 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEE-CC-CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEE
Confidence 344444 68999999999998877775 23 447889999999876 5667789999999999888777765443 4667
Q ss_pred Eee--CCEEE-EEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCC-cEEEEECCCCceeEEeccC
Q 014934 257 AWS--SSLLS-SGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDN-RLFVWNQHSTQPVLKYCEH 332 (415)
Q Consensus 257 ~~~--~~~l~-sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg-~I~iwd~~~~~~~~~~~~h 332 (415)
+|+ ++.++ +++.|+.|++||+++.. .+..+. +...+.+++|+|+|++++++..++ .+.+||..+++.+..+. .
T Consensus 79 ~~~~~g~~l~~~~~~~~~l~~~d~~~~~-~~~~~~-~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~-~ 155 (300)
T TIGR03866 79 ALHPNGKILYIANEDDNLVTVIDIETRK-VLAEIP-VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL-V 155 (300)
T ss_pred EECCCCCEEEEEcCCCCeEEEEECCCCe-EEeEee-CCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE-c
Confidence 787 45554 45678999999998765 344443 234578899999999999988765 57788998887665543 3
Q ss_pred CCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCC--------CCEEEEEECCCCCeEEEEEecCCCcEE
Q 014934 333 TAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTG--------SQVCNLVWSKNVNELVSTHGYSQNQII 404 (415)
Q Consensus 333 ~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~--------~~V~~l~~s~~~~~l~s~~g~~dg~I~ 404 (415)
...+..++|+|++..+++++. .++.|++||+.+++.+..+... .....+.|+++++.++++. ..++.|.
T Consensus 156 ~~~~~~~~~s~dg~~l~~~~~--~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~-~~~~~i~ 232 (300)
T TIGR03866 156 DQRPRFAEFTADGKELWVSSE--IGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVAL-GPANRVA 232 (300)
T ss_pred CCCccEEEECCCCCEEEEEcC--CCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEc-CCCCeEE
Confidence 345678999999987767654 6899999999999887766421 1245789999999876643 3567899
Q ss_pred EEECCCCcc
Q 014934 405 VWRYPTMSK 413 (415)
Q Consensus 405 vw~~~s~~~ 413 (415)
+||..+++.
T Consensus 233 v~d~~~~~~ 241 (300)
T TIGR03866 233 VVDAKTYEV 241 (300)
T ss_pred EEECCCCcE
Confidence 999987653
No 130
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=1.9e-19 Score=161.08 Aligned_cols=235 Identities=20% Similarity=0.349 Sum_probs=177.4
Q ss_pred ceeEeecCC-CcEEEEE-cCCeEEEEECCCCC--e--EEeEecCCCCCeEEEEEcC--CCCeEEEEECCCcEEEEECC--
Q 014934 169 YLNLVDWSS-HNVLAVG-LGNCVYLWNACSSK--V--TKLCDLGIDDSVCSVGWAN--RNTHLAVGTSHGKVQIWDAS-- 238 (415)
Q Consensus 169 ~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~--~--~~~~~~~~~~~V~~v~~sp--~g~~la~g~~dg~V~iwd~~-- 238 (415)
.|+++.|.. ++-+|++ +|++|+|||..... . ..... .|.+.|..|.|.+ -|+.+|+++.|++|.||.-.
T Consensus 15 lihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wr-ah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~ 93 (361)
T KOG2445|consen 15 LIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWR-AHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEK 93 (361)
T ss_pred eeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEE-ecCCcEEEEEecCccccceEEEEecCCceeeeeeccc
Confidence 478888988 6666665 78999999964432 2 22222 6789999999975 48999999999999999752
Q ss_pred -------CCeeeEEecCCCccEEEEEeeC----CEEEEEeCCCcEEEEECCCCCc-----cEEEec-------cccCCeE
Q 014934 239 -------RCKRVRTMEGHRLRVGALAWSS----SLLSSGSRDKSILQRDIRAQED-----FVSKLS-------GHKSEVC 295 (415)
Q Consensus 239 -------~~~~~~~l~~h~~~V~~l~~~~----~~l~sgs~dg~I~iwd~~~~~~-----~~~~~~-------~h~~~V~ 295 (415)
......++......|+++.|.| -.|++++.||.++||+.-.... +.+.+. .+.....
T Consensus 94 ~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~ 173 (361)
T KOG2445|consen 94 SEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCF 173 (361)
T ss_pred ccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcce
Confidence 1234556677788999999984 5799999999999998765431 111222 4677889
Q ss_pred EEEEeC---CCCEEEEEeCC-----CcEEEEECCCC----ceeEEeccCCCcEEEEEEcCCCC---cEEEEEcCCCCCeE
Q 014934 296 GLKWSY---DNRELASGGND-----NRLFVWNQHST----QPVLKYCEHTAAVKAIAWSPHLH---GLLASGGGTADRCI 360 (415)
Q Consensus 296 ~l~~sp---dg~~lasg~~d-----g~I~iwd~~~~----~~~~~~~~h~~~V~~l~~sp~~~---~llasggg~~d~~I 360 (415)
|+.|+| ...+||+|+.+ +.++||..... ..+.++.+|..+|++|+|.|.-. ++||++. .|| |
T Consensus 174 CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~--kDg-v 250 (361)
T KOG2445|consen 174 CVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVAT--KDG-V 250 (361)
T ss_pred EEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEee--cCc-E
Confidence 999997 45678888876 57899986543 34556678999999999999732 4788876 799 9
Q ss_pred EEEECCCC--------------------cEEEEee-CCCCEEEEEECCCCCeEEEEEecCCCcEEEEECC
Q 014934 361 RFWNTTTN--------------------THLSCMD-TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYP 409 (415)
Q Consensus 361 ~iwd~~t~--------------------~~~~~~~-~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~ 409 (415)
+||++... +.+..++ |.++|..+.|+-.|..|.+ .++||.|++|+..
T Consensus 251 ~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsS--tGdDG~VRLWkan 318 (361)
T KOG2445|consen 251 RIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSS--TGDDGCVRLWKAN 318 (361)
T ss_pred EEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEee--cCCCceeeehhhh
Confidence 99999731 1122232 6789999999999999988 4689999999853
No 131
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.86 E-value=3.1e-20 Score=173.85 Aligned_cols=238 Identities=18% Similarity=0.263 Sum_probs=182.6
Q ss_pred ceeEeecCC--C-cEEEEEc-CCeEEEEECCCCC----eEEeEecCCCCCeEEEEEcCC-CCeEEEEECCCcEEEEECCC
Q 014934 169 YLNLVDWSS--H-NVLAVGL-GNCVYLWNACSSK----VTKLCDLGIDDSVCSVGWANR-NTHLAVGTSHGKVQIWDASR 239 (415)
Q Consensus 169 ~i~~l~ws~--~-~~la~~~-d~~V~iwd~~~~~----~~~~~~~~~~~~V~~v~~sp~-g~~la~g~~dg~V~iwd~~~ 239 (415)
.|.+++|+| + +++|+|. .|.|-+||..+.+ -+.++. .|...|.++.|+|. -..+.+.+.||+|++-|++.
T Consensus 188 Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~-~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~ 266 (498)
T KOG4328|consen 188 RITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFT-PHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEG 266 (498)
T ss_pred ceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEec-cCCccccceEecCCChhheeeeccCceeeeeeecc
Confidence 489999999 3 6788884 5899999995322 123332 78999999999995 46888899999999999987
Q ss_pred Ce--eeEEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCC-CCEEEEEeCCCc
Q 014934 240 CK--RVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYD-NRELASGGNDNR 314 (415)
Q Consensus 240 ~~--~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd-g~~lasg~~dg~ 314 (415)
.. .+..+..-...+..+.++ ...++.|..=|...+||.|+.......+.-|+..|++++++|. ..+||+++.|++
T Consensus 267 ~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T 346 (498)
T KOG4328|consen 267 NISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQT 346 (498)
T ss_pred hhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcc
Confidence 54 333333344556666676 3566677777799999999988667778889999999999994 457899999999
Q ss_pred EEEEECCCC---c-eeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEEC----CCCcEEEEeeCCCC------E
Q 014934 315 LFVWNQHST---Q-PVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNT----TTNTHLSCMDTGSQ------V 380 (415)
Q Consensus 315 I~iwd~~~~---~-~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~----~t~~~~~~~~~~~~------V 380 (415)
++|||++.- . ++.....|...|.+..|||.+..|+.++ .|..|+|||. ....++..|.|... .
T Consensus 347 ~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~---~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~ 423 (498)
T KOG4328|consen 347 AKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTC---QDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTP 423 (498)
T ss_pred eeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeec---cCCceEEeecccccccCCccceeeccCcccccccc
Confidence 999999753 2 3344448999999999999998766555 7999999998 44555666665432 4
Q ss_pred EEEEECCCCCeEEEEEecCCCcEEEEECCCCc
Q 014934 381 CNLVWSKNVNELVSTHGYSQNQIIVWRYPTMS 412 (415)
Q Consensus 381 ~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~ 412 (415)
....|.|+..++++ |..-..|-|+|-..++
T Consensus 424 fKA~W~P~~~li~v--g~~~r~IDv~~~~~~q 453 (498)
T KOG4328|consen 424 FKAAWDPDYNLIVV--GRYPRPIDVFDGNGGQ 453 (498)
T ss_pred hhheeCCCccEEEE--eccCcceeEEcCCCCE
Confidence 56899999999988 6666679999876554
No 132
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=1.1e-19 Score=162.99 Aligned_cols=196 Identities=20% Similarity=0.279 Sum_probs=167.3
Q ss_pred CCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEecCCCccEEEEEeeC----CEEEEEeCCCcEEEEECCCCC
Q 014934 206 GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWSS----SLLSSGSRDKSILQRDIRAQE 281 (415)
Q Consensus 206 ~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~~----~~l~sgs~dg~I~iwd~~~~~ 281 (415)
.|.+.+++|+.+ |.++|+|+.|-+|+|||+.+.+.+..+-.|.+.|+++.|.+ ..|++|+.||.|.+|+...-.
T Consensus 41 aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~ 118 (362)
T KOG0294|consen 41 AHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWE 118 (362)
T ss_pred ccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeE
Confidence 688999999984 89999999999999999999999999999999999999984 379999999999999998875
Q ss_pred ccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEE
Q 014934 282 DFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIR 361 (415)
Q Consensus 282 ~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~ 361 (415)
.+..+++|.+.|+.++.+|.|++-++.+.|+.+++||+-.|+.-..+.-. ....-+.|+|.|.++++.+ ...|-
T Consensus 119 -~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~-~~at~v~w~~~Gd~F~v~~----~~~i~ 192 (362)
T KOG0294|consen 119 -LLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLK-NKATLVSWSPQGDHFVVSG----RNKID 192 (362)
T ss_pred -EeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccC-CcceeeEEcCCCCEEEEEe----ccEEE
Confidence 78999999999999999999999999999999999999988765555322 2234499999999666655 57899
Q ss_pred EEECCCCcEEEEeeCCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCCc
Q 014934 362 FWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMS 412 (415)
Q Consensus 362 iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~ 412 (415)
+|.+.+......+.....+.++.|.. +.+|++ |.+|+.|.+||..+..
T Consensus 193 i~q~d~A~v~~~i~~~~r~l~~~~l~-~~~L~v--G~d~~~i~~~D~ds~~ 240 (362)
T KOG0294|consen 193 IYQLDNASVFREIENPKRILCATFLD-GSELLV--GGDNEWISLKDTDSDT 240 (362)
T ss_pred EEecccHhHhhhhhccccceeeeecC-CceEEE--ecCCceEEEeccCCCc
Confidence 99999988887776666677777765 456777 7899999999998744
No 133
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.86 E-value=7.1e-19 Score=175.12 Aligned_cols=242 Identities=19% Similarity=0.276 Sum_probs=189.5
Q ss_pred CCcceeEeecCC---CcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCee
Q 014934 166 DDFYLNLVDWSS---HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKR 242 (415)
Q Consensus 166 ~~~~i~~l~ws~---~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~ 242 (415)
.++ |+.+.--+ +.++.+..+|.+.|||+.+++.+..+. ++.+.|+++.=+|-=..+|+|..+|+|.|++++.++.
T Consensus 159 ~~~-Ital~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~-~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dki 236 (910)
T KOG1539|consen 159 GDF-ITALLHPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQ-EFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKI 236 (910)
T ss_pred CCc-eeeEecchhheeeEEEeecCCcEEEEEeccCcEEEEec-ccccceeEeccCCcceEEEEeccCceEEEEEcccCcE
Confidence 344 66664333 566666789999999999999998887 6779999999999989999999999999999999999
Q ss_pred eEEecCCCccEEEEEee--C-CEEEEEeCCCcEEEEECCCCCccEEEecc------------------------------
Q 014934 243 VRTMEGHRLRVGALAWS--S-SLLSSGSRDKSILQRDIRAQEDFVSKLSG------------------------------ 289 (415)
Q Consensus 243 ~~~l~~h~~~V~~l~~~--~-~~l~sgs~dg~I~iwd~~~~~~~~~~~~~------------------------------ 289 (415)
+.+++-..++|+.++|. | .++++|+..|.+.+||++...........
T Consensus 237 l~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~v 316 (910)
T KOG1539|consen 237 LMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWV 316 (910)
T ss_pred EEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEE
Confidence 99999446999999998 4 57888888899999998653310000001
Q ss_pred --------------------------------------------------------------------------------
Q 014934 290 -------------------------------------------------------------------------------- 289 (415)
Q Consensus 290 -------------------------------------------------------------------------------- 289 (415)
T Consensus 317 fD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p 396 (910)
T KOG1539|consen 317 FDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLP 396 (910)
T ss_pred eeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCC
Confidence
Q ss_pred --------------------------------------------cc------CCeEEEEEeCCCCEEEEEeCCCcEEEEE
Q 014934 290 --------------------------------------------HK------SEVCGLKWSYDNRELASGGNDNRLFVWN 319 (415)
Q Consensus 290 --------------------------------------------h~------~~V~~l~~spdg~~lasg~~dg~I~iwd 319 (415)
+. ..+.+++.++.|++.+.|...|.|-+|+
T Consensus 397 ~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fN 476 (910)
T KOG1539|consen 397 PIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFN 476 (910)
T ss_pred cceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEE
Confidence 11 3455666677777777777777788888
Q ss_pred CCCCceeEEe---ccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEE-----------------------
Q 014934 320 QHSTQPVLKY---CEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSC----------------------- 373 (415)
Q Consensus 320 ~~~~~~~~~~---~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~----------------------- 373 (415)
+.+|.....| ..|..+|++++..--++ ++++++ .+|.+++||..+...+..
T Consensus 477 mQSGi~r~sf~~~~ah~~~V~gla~D~~n~-~~vsa~--~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ 553 (910)
T KOG1539|consen 477 MQSGIHRKSFGDSPAHKGEVTGLAVDGTNR-LLVSAG--ADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIAL 553 (910)
T ss_pred cccCeeecccccCccccCceeEEEecCCCc-eEEEcc--CcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhc
Confidence 7777766667 47999999999987776 677766 899999999986542211
Q ss_pred ------------------e-eCCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCCccc
Q 014934 374 ------------------M-DTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKV 414 (415)
Q Consensus 374 ------------------~-~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~~l 414 (415)
+ .|+..|+.++|||||++|++ .+.|++|++||++++..+
T Consensus 554 ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlis--asmD~tIr~wDlpt~~lI 611 (910)
T KOG1539|consen 554 DDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLIS--ASMDSTIRTWDLPTGTLI 611 (910)
T ss_pred CceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEE--eecCCcEEEEeccCccee
Confidence 1 15678999999999999999 678999999999998754
No 134
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.85 E-value=1.6e-19 Score=160.64 Aligned_cols=235 Identities=23% Similarity=0.363 Sum_probs=184.5
Q ss_pred CCCcceeEeecCC--CcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCC---CCeEEEEECCCcEEEEECC
Q 014934 165 QDDFYLNLVDWSS--HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANR---NTHLAVGTSHGKVQIWDAS 238 (415)
Q Consensus 165 ~~~~~i~~l~ws~--~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~---g~~la~g~~dg~V~iwd~~ 238 (415)
...|.|..+.|-| ..++..+ .|.++++||..+.+....+. .++.|.+-+|+|- ..++|+|+.+-.|++-|+.
T Consensus 99 ~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~--me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~ 176 (397)
T KOG4283|consen 99 GHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFK--MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIA 176 (397)
T ss_pred cceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEee--cCceeehhhcChhhhcceEEEEecCCCcEEEEecc
Confidence 4567899999999 4455555 69999999999988776664 4588999999984 4588999999999999999
Q ss_pred CCeeeEEecCCCccEEEEEeeC---CEEEEEeCCCcEEEEECCCCCccEEE--------------eccccCCeEEEEEeC
Q 014934 239 RCKRVRTMEGHRLRVGALAWSS---SLLSSGSRDKSILQRDIRAQEDFVSK--------------LSGHKSEVCGLKWSY 301 (415)
Q Consensus 239 ~~~~~~~l~~h~~~V~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~--------------~~~h~~~V~~l~~sp 301 (415)
+|..-+++.+|...|.++.|++ -.|++|+.||.|++||+|....+... -..|.+.|.+++|+.
T Consensus 177 SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tS 256 (397)
T KOG4283|consen 177 SGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTS 256 (397)
T ss_pred CCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecc
Confidence 9999999999999999999995 47999999999999999865323322 235778899999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceeE-Eec--cCCC----cEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEe
Q 014934 302 DNRELASGGNDNRLFVWNQHSTQPVL-KYC--EHTA----AVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCM 374 (415)
Q Consensus 302 dg~~lasg~~dg~I~iwd~~~~~~~~-~~~--~h~~----~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~ 374 (415)
++.++++++.|.++++|+..+|+... .+- .|+. ++. +. +-+.. +++--- .++.+.++++-.|..+..+
T Consensus 257 d~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~-~~-~~~s~-vfv~~p--~~~~lall~~~sgs~ir~l 331 (397)
T KOG4283|consen 257 DARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVH-IQ-SMDSD-VFVLFP--NDGSLALLNLLEGSFVRRL 331 (397)
T ss_pred cchhhhhccCccceEEeecccCcccccccccccccccccceEE-Ee-ecccc-eEEEEe--cCCeEEEEEccCceEEEee
Confidence 99999999999999999998875321 110 1221 111 22 22222 222222 5689999999999988888
Q ss_pred e-CCCCEEEEEECCCCCeEEEEEecCCCcEEEEEC
Q 014934 375 D-TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRY 408 (415)
Q Consensus 375 ~-~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~ 408 (415)
. +...|.+..+-++-+...+ |..|+.|..|-.
T Consensus 332 ~~h~k~i~c~~~~~~fq~~~t--g~~d~ni~~w~p 364 (397)
T KOG4283|consen 332 STHLKRINCAAYRPDFEQCFT--GDMNGNIYMWSP 364 (397)
T ss_pred ecccceeeEEeecCchhhhhc--cccCCccccccc
Confidence 7 4566888999999999998 899999999976
No 135
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.85 E-value=6.3e-21 Score=173.79 Aligned_cols=199 Identities=20% Similarity=0.368 Sum_probs=179.1
Q ss_pred CCCCCeEEEEEcCCC-CeEEEEECCCcEEEEECCCCeeeEEecCCCccEEEEEeeCCEEEEEeCCCcEEEEECCCCCccE
Q 014934 206 GIDDSVCSVGWANRN-THLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFV 284 (415)
Q Consensus 206 ~~~~~V~~v~~sp~g-~~la~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~ 284 (415)
+|.+.|.|++=+|.. ..+|+|+.||.|+|||+.+..++.++..|.+.|..|++....+++++.|++|+.|-+... +.
T Consensus 64 gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~~~~~tvgdDKtvK~wk~~~~--p~ 141 (433)
T KOG0268|consen 64 GHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQTSFFTVGDDKTVKQWKIDGP--PL 141 (433)
T ss_pred ccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecccceEEecCCcceeeeeccCC--cc
Confidence 899999999999977 789999999999999999999999999999999999999899999999999999998774 45
Q ss_pred EEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEE
Q 014934 285 SKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWN 364 (415)
Q Consensus 285 ~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd 364 (415)
+.+.+ ...+.++.-+..+..+||||. .|.|||..-..|+..+..-...|.++.|+|....+|++++ .|+.|.+||
T Consensus 142 ~tilg-~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~--sDrsIvLyD 216 (433)
T KOG0268|consen 142 HTILG-KSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCA--SDRSIVLYD 216 (433)
T ss_pred eeeec-cccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeec--cCCceEEEe
Confidence 66654 456888888888889999986 4999999999999999888889999999999999999997 899999999
Q ss_pred CCCCcEEEEeeCCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCCcc
Q 014934 365 TTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSK 413 (415)
Q Consensus 365 ~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~~ 413 (415)
++++.+++.+-.+..-+.++|+|.+..+++ |.+|..++.||+..++.
T Consensus 217 ~R~~~Pl~KVi~~mRTN~IswnPeafnF~~--a~ED~nlY~~DmR~l~~ 263 (433)
T KOG0268|consen 217 LRQASPLKKVILTMRTNTICWNPEAFNFVA--ANEDHNLYTYDMRNLSR 263 (433)
T ss_pred cccCCccceeeeeccccceecCccccceee--ccccccceehhhhhhcc
Confidence 999999999988888899999997766666 88999999999987764
No 136
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=9.7e-20 Score=163.39 Aligned_cols=237 Identities=14% Similarity=0.218 Sum_probs=182.2
Q ss_pred eeEeecCC-CcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEec
Q 014934 170 LNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTME 247 (415)
Q Consensus 170 i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~ 247 (415)
.+|+.|++ +.+||+| .+|.|.|||..|-.+.+.+. .|..+|++++||++|+.|++++.|..|.+||+..+.++..+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~ls-aH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLS-AHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhh-ccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE
Confidence 56899999 9999999 58999999999988877776 899999999999999999999999999999999999888877
Q ss_pred CCCccEEEEEeeC---CEEEEEeCCCcEEEEECCCCCccEEEeccc---cCCeEEEEEeCCCCEEEEEeCCCcEEEEECC
Q 014934 248 GHRLRVGALAWSS---SLLSSGSRDKSILQRDIRAQEDFVSKLSGH---KSEVCGLKWSYDNRELASGGNDNRLFVWNQH 321 (415)
Q Consensus 248 ~h~~~V~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h---~~~V~~l~~spdg~~lasg~~dg~I~iwd~~ 321 (415)
...+|+...|+| +.+++.-.+..-.+.++..+.+.+...... ...-.+..|.+.|+++++|...|.+.++|..
T Consensus 105 -f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~ 183 (405)
T KOG1273|consen 105 -FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAE 183 (405)
T ss_pred -ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecc
Confidence 678899999995 455555555556666665543211111110 1112233688999999999999999999999
Q ss_pred CCceeEEeccCC-CcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCC-------cEE--EEee---CCCCEEEEEECCC
Q 014934 322 STQPVLKYCEHT-AAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTN-------THL--SCMD---TGSQVCNLVWSKN 388 (415)
Q Consensus 322 ~~~~~~~~~~h~-~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~-------~~~--~~~~---~~~~V~~l~~s~~ 388 (415)
+.+++..++-.. ..|+.+.++-.|+.++.-. .|+.||.|+++.- +.- +.+. ...+=.+++|+.+
T Consensus 184 t~e~vas~rits~~~IK~I~~s~~g~~liiNt---sDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~d 260 (405)
T KOG1273|consen 184 TLECVASFRITSVQAIKQIIVSRKGRFLIINT---SDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGD 260 (405)
T ss_pred hheeeeeeeechheeeeEEEEeccCcEEEEec---CCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCC
Confidence 999988887555 7899999999998665543 7999999998731 111 1111 2334457899999
Q ss_pred CCeEEEEEecCCCcEEEEECCCCc
Q 014934 389 VNELVSTHGYSQNQIIVWRYPTMS 412 (415)
Q Consensus 389 ~~~l~s~~g~~dg~I~vw~~~s~~ 412 (415)
|.++++++ .....++||.-..+.
T Consensus 261 geYv~a~s-~~aHaLYIWE~~~Gs 283 (405)
T KOG1273|consen 261 GEYVCAGS-ARAHALYIWEKSIGS 283 (405)
T ss_pred ccEEEecc-ccceeEEEEecCCcc
Confidence 99999864 567789999976654
No 137
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.85 E-value=1.5e-19 Score=161.40 Aligned_cols=202 Identities=21% Similarity=0.324 Sum_probs=154.2
Q ss_pred CCCCCeEEEEEcC-CCCeEEEEECCCcEEEEECCC-Ceee-EEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCC
Q 014934 206 GIDDSVCSVGWAN-RNTHLAVGTSHGKVQIWDASR-CKRV-RTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQ 280 (415)
Q Consensus 206 ~~~~~V~~v~~sp-~g~~la~g~~dg~V~iwd~~~-~~~~-~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~ 280 (415)
...+.|.+|+||| ...+++.|+.||+|++|+++. +..+ +....|.++|.+++|+ +..+++|+.|+.+++||+.++
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~ 104 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG 104 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence 5578999999999 556777899999999999976 3333 3455799999999998 689999999999999999998
Q ss_pred CccEEEeccccCCeEEEEEeCCCC--EEEEEeCCCcEEEEECCCCceeEEecc---------------------------
Q 014934 281 EDFVSKLSGHKSEVCGLKWSYDNR--ELASGGNDNRLFVWNQHSTQPVLKYCE--------------------------- 331 (415)
Q Consensus 281 ~~~~~~~~~h~~~V~~l~~spdg~--~lasg~~dg~I~iwd~~~~~~~~~~~~--------------------------- 331 (415)
+ +..+..|..+|.++.|-+... .|++|+.|.+|+.||.+...++.++.-
T Consensus 105 Q--~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vyn 182 (347)
T KOG0647|consen 105 Q--VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYN 182 (347)
T ss_pred C--eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEE
Confidence 5 677889999999999987665 899999999999999998766555421
Q ss_pred ----------C----CCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEE--EEee-CC---------CCEEEEEE
Q 014934 332 ----------H----TAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHL--SCMD-TG---------SQVCNLVW 385 (415)
Q Consensus 332 ----------h----~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~--~~~~-~~---------~~V~~l~~ 385 (415)
+ +-.+++|+..+++... +.|+ .+|.+-+..+..+... ..++ |. ..|.+++|
T Consensus 183 L~n~~te~k~~~SpLk~Q~R~va~f~d~~~~-alGs--iEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~F 259 (347)
T KOG0647|consen 183 LENPPTEFKRIESPLKWQTRCVACFQDKDGF-ALGS--IEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAF 259 (347)
T ss_pred cCCCcchhhhhcCcccceeeEEEEEecCCce-Eeee--ecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEe
Confidence 1 1134666666666533 4444 6777777777665221 1121 11 23778999
Q ss_pred CCCCCeEEEEEecCCCcEEEEECCCCccc
Q 014934 386 SKNVNELVSTHGYSQNQIIVWRYPTMSKV 414 (415)
Q Consensus 386 s~~~~~l~s~~g~~dg~I~vw~~~s~~~l 414 (415)
+|....|++ .++||++.+||-..-.+|
T Consensus 260 hP~hgtlvT--aGsDGtf~FWDkdar~kL 286 (347)
T KOG0647|consen 260 HPVHGTLVT--AGSDGTFSFWDKDARTKL 286 (347)
T ss_pred ecccceEEE--ecCCceEEEecchhhhhh
Confidence 999999998 568999999997665544
No 138
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.85 E-value=3.3e-19 Score=164.19 Aligned_cols=243 Identities=20% Similarity=0.339 Sum_probs=189.0
Q ss_pred CCcceeEeecCC------CcEEEEE---cC-CeEEEEE-CCCCCeEEeEec--CCCCCeEEEEEcC-CCCeEEEEECCCc
Q 014934 166 DDFYLNLVDWSS------HNVLAVG---LG-NCVYLWN-ACSSKVTKLCDL--GIDDSVCSVGWAN-RNTHLAVGTSHGK 231 (415)
Q Consensus 166 ~~~~i~~l~ws~------~~~la~~---~d-~~V~iwd-~~~~~~~~~~~~--~~~~~V~~v~~sp-~g~~la~g~~dg~ 231 (415)
++..|+-+.|.+ ..+||+- .+ |...+.- .++|++-..+.+ +|++.|..++|+| +...||+|+.|.+
T Consensus 26 ddIrVs~~tWDS~fcavNPkfiAvi~easgGgaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~ 105 (472)
T KOG0303|consen 26 DDIRVSRVTWDSSFCAVNPKFVAVIIEASGGGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTK 105 (472)
T ss_pred cceeeeeeeccccccccCCceEEEEEecCCCcceeecccccccccCCCCCCccCccccccccccCccCCceeecCCCCce
Confidence 455577777765 2455553 22 2222222 234444332222 8999999999999 5678999999999
Q ss_pred EEEEECCCC-------eeeEEecCCCccEEEEEeeC---CEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeC
Q 014934 232 VQIWDASRC-------KRVRTMEGHRLRVGALAWSS---SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSY 301 (415)
Q Consensus 232 V~iwd~~~~-------~~~~~l~~h~~~V~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp 301 (415)
|.||++..+ +.+..+.+|+.+|.-++|++ +.|++++.|.+|.+||+.+++. +..+. |...|.++.|+.
T Consensus 106 v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgea-li~l~-hpd~i~S~sfn~ 183 (472)
T KOG0303|consen 106 VMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEA-LITLD-HPDMVYSMSFNR 183 (472)
T ss_pred EEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCce-eeecC-CCCeEEEEEecc
Confidence 999998543 45677889999999999994 8999999999999999999985 44455 999999999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceeEEeccCCCc-EEEEEEcCCCCcEEEEEc-CCCCCeEEEEECCC---CcEEEEeeC
Q 014934 302 DNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAA-VKAIAWSPHLHGLLASGG-GTADRCIRFWNTTT---NTHLSCMDT 376 (415)
Q Consensus 302 dg~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~-V~~l~~sp~~~~llasgg-g~~d~~I~iwd~~t---~~~~~~~~~ 376 (415)
||.+|++.+.|.+|+|||.++++.+..-.+|.+. -..+.|-.++. ++.+|- ...++.+-+||... .-.+.++++
T Consensus 184 dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDt 262 (472)
T KOG0303|consen 184 DGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK-IFTTGFSRMSERQIALWDPNNLEEPIALQELDT 262 (472)
T ss_pred CCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc-eeeeccccccccceeccCcccccCcceeEEecc
Confidence 9999999999999999999999999988788754 34566777776 666552 23578999998765 345677889
Q ss_pred CCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCCc
Q 014934 377 GSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMS 412 (415)
Q Consensus 377 ~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~ 412 (415)
.+.|.---|.++...+..+ |-.|+.|+.|.+..-.
T Consensus 263 SnGvl~PFyD~dt~ivYl~-GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 263 SNGVLLPFYDPDTSIVYLC-GKGDSSIRYFEITNEP 297 (472)
T ss_pred CCceEEeeecCCCCEEEEE-ecCCcceEEEEecCCC
Confidence 9999988999998887766 8889999999987543
No 139
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=1.6e-19 Score=162.19 Aligned_cols=156 Identities=21% Similarity=0.321 Sum_probs=120.1
Q ss_pred CCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCC------------------------------------eeeEEec--
Q 014934 206 GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRC------------------------------------KRVRTME-- 247 (415)
Q Consensus 206 ~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~------------------------------------~~~~~l~-- 247 (415)
+|.+.|++++|+.||++||+++.|+.|+||+++.. ..+..+.
T Consensus 84 gH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~ 163 (420)
T KOG2096|consen 84 GHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLV 163 (420)
T ss_pred ccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEee
Confidence 89999999999999999999999999999997531 1111110
Q ss_pred ---------------------CCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCC
Q 014934 248 ---------------------GHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNR 304 (415)
Q Consensus 248 ---------------------~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~ 304 (415)
.|+..+-.+-.. +.+|++++.|..|.+||++ ++ .+..+......-...+.||+|+
T Consensus 164 K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq-~L~~idtnq~~n~~aavSP~GR 241 (420)
T KOG2096|consen 164 KKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQ-LLQSIDTNQSSNYDAAVSPDGR 241 (420)
T ss_pred ecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cc-eeeeeccccccccceeeCCCCc
Confidence 011122222111 3589999999999999998 43 5667776666677788999999
Q ss_pred EEEEEeCCCcEEEEECC---CC-----ceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECC
Q 014934 305 ELASGGNDNRLFVWNQH---ST-----QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTT 366 (415)
Q Consensus 305 ~lasg~~dg~I~iwd~~---~~-----~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~ 366 (415)
++|+++---.|+||.+- .| ..+..+++|+++|..++|+++.. -+++.+ .||.+++||+.
T Consensus 242 Fia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~-r~vtvS--kDG~wriwdtd 308 (420)
T KOG2096|consen 242 FIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSST-RAVTVS--KDGKWRIWDTD 308 (420)
T ss_pred EEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcc-eeEEEe--cCCcEEEeecc
Confidence 99999998999999962 22 34678889999999999999987 455555 89999999985
No 140
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=1.7e-20 Score=162.88 Aligned_cols=203 Identities=21% Similarity=0.374 Sum_probs=165.5
Q ss_pred EecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCC---eeeEEecCCCccEEEEEee----CCEEEEEeCCCcEEEE
Q 014934 203 CDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRC---KRVRTMEGHRLRVGALAWS----SSLLSSGSRDKSILQR 275 (415)
Q Consensus 203 ~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~---~~~~~l~~h~~~V~~l~~~----~~~l~sgs~dg~I~iw 275 (415)
+...|.+.|..+...--|++||+++.|++|+|+.++.. +.+.++.+|.++|..++|- +.+|++++.||.|.||
T Consensus 6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiW 85 (299)
T KOG1332|consen 6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIW 85 (299)
T ss_pred hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEE
Confidence 34478888998888888999999999999999999754 5678899999999999996 6899999999999999
Q ss_pred ECCCCC-ccEEEeccccCCeEEEEEeCC--CCEEEEEeCCCcEEEEECCCC---ceeEEeccCCCcEEEEEEcCC---CC
Q 014934 276 DIRAQE-DFVSKLSGHKSEVCGLKWSYD--NRELASGGNDNRLFVWNQHST---QPVLKYCEHTAAVKAIAWSPH---LH 346 (415)
Q Consensus 276 d~~~~~-~~~~~~~~h~~~V~~l~~spd--g~~lasg~~dg~I~iwd~~~~---~~~~~~~~h~~~V~~l~~sp~---~~ 346 (415)
.-.++. ........|...|++++|.|. |-.||+++.||.|.|.+.++. ........|.-.|++++|.|. |.
T Consensus 86 ke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~ 165 (299)
T KOG1332|consen 86 KEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGS 165 (299)
T ss_pred ecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcc
Confidence 987764 123456689999999999985 567999999999999998754 122234579999999999997 31
Q ss_pred ----------cEEEEEcCCCCCeEEEEECCCCcEE--EEe-eCCCCEEEEEECCCC----CeEEEEEecCCCcEEEEECC
Q 014934 347 ----------GLLASGGGTADRCIRFWNTTTNTHL--SCM-DTGSQVCNLVWSKNV----NELVSTHGYSQNQIIVWRYP 409 (415)
Q Consensus 347 ----------~llasggg~~d~~I~iwd~~t~~~~--~~~-~~~~~V~~l~~s~~~----~~l~s~~g~~dg~I~vw~~~ 409 (415)
+-|++|| .|..|+||+...+.-+ ..+ .|...|..++|.|.- ..|++ ++.||++.||...
T Consensus 166 ~~~~~~~~~~krlvSgG--cDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS--~SqDg~viIwt~~ 241 (299)
T KOG1332|consen 166 LVDQGPAAKVKRLVSGG--CDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIAS--CSQDGTVIIWTKD 241 (299)
T ss_pred ccccCcccccceeeccC--CccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEE--ecCCCcEEEEEec
Confidence 3488887 8999999999887422 223 367889999999975 45666 7899999999865
No 141
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.84 E-value=1e-19 Score=176.36 Aligned_cols=231 Identities=21% Similarity=0.305 Sum_probs=175.9
Q ss_pred CcEEEEE-cCCeEEEEECCCCCeE-----EeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEE--ecCC
Q 014934 178 HNVLAVG-LGNCVYLWNACSSKVT-----KLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRT--MEGH 249 (415)
Q Consensus 178 ~~~la~~-~d~~V~iwd~~~~~~~-----~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~--l~~h 249 (415)
..+||++ .+|.|.++|....... ....+.|...|..+.|.|....|++++.|.++++||+++.+++.. +.+|
T Consensus 64 eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH 143 (720)
T KOG0321|consen 64 EHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGH 143 (720)
T ss_pred cceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeeccc
Confidence 5789999 4689999998664332 111237889999999999667899999999999999999988877 8899
Q ss_pred CccEEEEEee---CCEEEEEeCCCcEEEEECCCCCc--------------------------cEEEeccccCCeEE---E
Q 014934 250 RLRVGALAWS---SSLLSSGSRDKSILQRDIRAQED--------------------------FVSKLSGHKSEVCG---L 297 (415)
Q Consensus 250 ~~~V~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~--------------------------~~~~~~~h~~~V~~---l 297 (415)
...|.+++|. +..|++|++||.|.|||++.... -......+...|.+ +
T Consensus 144 ~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTv 223 (720)
T KOG0321|consen 144 TGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTV 223 (720)
T ss_pred ccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEE
Confidence 9999999997 58999999999999999985430 01122344445555 5
Q ss_pred EEeCCCCEEEEEeC-CCcEEEEECCCCceeE--------EeccC---CCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEEC
Q 014934 298 KWSYDNRELASGGN-DNRLFVWNQHSTQPVL--------KYCEH---TAAVKAIAWSPHLHGLLASGGGTADRCIRFWNT 365 (415)
Q Consensus 298 ~~spdg~~lasg~~-dg~I~iwd~~~~~~~~--------~~~~h---~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~ 365 (415)
.+..|...||+++. |+.|+|||++...... .+..| ...+.++.....|.+|+|++ .|+.|++||+
T Consensus 224 v~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsC---tD~sIy~ynm 300 (720)
T KOG0321|consen 224 VLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASC---TDNSIYFYNM 300 (720)
T ss_pred EEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEe---cCCcEEEEec
Confidence 56678999999887 9999999998753322 22223 34577888888889999999 5999999999
Q ss_pred CCCc--EEEEeeC---CCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCCcc
Q 014934 366 TTNT--HLSCMDT---GSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSK 413 (415)
Q Consensus 366 ~t~~--~~~~~~~---~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~~ 413 (415)
.+-. ++..+.+ ...-..-..+|++.+|++ |+.|...++|.+.+.+.
T Consensus 301 ~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~S--gSsd~~ayiw~vs~~e~ 351 (720)
T KOG0321|consen 301 RSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLS--GSSDEQAYIWVVSSPEA 351 (720)
T ss_pred cccCcCchhhccCcccceeeeeeecCCCCceEec--cCCCcceeeeeecCccC
Confidence 8643 2233221 233344567999999999 88999999999987653
No 142
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=6.9e-19 Score=176.98 Aligned_cols=220 Identities=18% Similarity=0.282 Sum_probs=180.7
Q ss_pred CcceeEeecCCCcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEe
Q 014934 167 DFYLNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTM 246 (415)
Q Consensus 167 ~~~i~~l~ws~~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l 246 (415)
.-.+.+++-..+.+++++.+++|.+|....++...++. ..+-++.+++++.+|+++|.|+.|-.|++.++.+......+
T Consensus 56 g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~~iL~-Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~l 134 (933)
T KOG1274|consen 56 GELVSSIACYSNHFLTGSEQNTVLRYKFPSGEEDTILA-RFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVL 134 (933)
T ss_pred CceeEEEeecccceEEeeccceEEEeeCCCCCccceee-eeeccceEEEEecCCcEEEeecCceeEEEEeccccchheee
Confidence 33466676666777887889999999998887654443 44578999999999999999999999999999999999999
Q ss_pred cCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEecc-------c-cCCeEEEEEeCCCCEEEEEeCCCcEE
Q 014934 247 EGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSG-------H-KSEVCGLKWSYDNRELASGGNDNRLF 316 (415)
Q Consensus 247 ~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~-------h-~~~V~~l~~spdg~~lasg~~dg~I~ 316 (415)
.+|.++|.++.++ +++|++.+.||.|++||+..+. +...+.+ - ...++.++|+|+|..||..+.|+.|.
T Consensus 135 rgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~-~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vk 213 (933)
T KOG1274|consen 135 RGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGI-LSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVK 213 (933)
T ss_pred cccCCceeeeeEcCCCCEEEEEecCceEEEEEcccch-hhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEE
Confidence 9999999999999 5899999999999999999775 2333221 1 34567799999999999999999999
Q ss_pred EEECCCCceeEEecc--CCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEE
Q 014934 317 VWNQHSTQPVLKYCE--HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVS 394 (415)
Q Consensus 317 iwd~~~~~~~~~~~~--h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s 394 (415)
+|+..++.....+.. +...+..+.|+|.|.+| |+++ .||.|.|||+.+.+. ......||+++|.|+.+.+-.
T Consensus 214 vy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~Yi-AAs~--~~g~I~vWnv~t~~~---~~~~~~Vc~~aw~p~~n~it~ 287 (933)
T KOG1274|consen 214 VYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYI-AAST--LDGQILVWNVDTHER---HEFKRAVCCEAWKPNANAITL 287 (933)
T ss_pred EEccCCceeheeecccccccceEEEEEcCCCcEE-eeec--cCCcEEEEecccchh---ccccceeEEEecCCCCCeeEE
Confidence 999999988877753 44559999999999854 5544 899999999998332 234678999999999887655
No 143
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.84 E-value=2e-18 Score=163.43 Aligned_cols=230 Identities=21% Similarity=0.341 Sum_probs=181.0
Q ss_pred cceeEeecCC-CcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCC------
Q 014934 168 FYLNLVDWSS-HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRC------ 240 (415)
Q Consensus 168 ~~i~~l~ws~-~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~------ 240 (415)
-+|.|+.|.+ ++++..-++|.|.||+..+.+..+... .|.+.|.+++...+|.+|- |+.|..|..||-.-.
T Consensus 247 k~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~-aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~e 324 (626)
T KOG2106|consen 247 KFVLCVTFLENGDVITGDSGGNILIWSKGTNRISKQVH-AHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETE 324 (626)
T ss_pred eEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEeEee-ecCCceEEEEEecCccEee-cCccceEEecccccccccccc
Confidence 5799999999 677777789999999998888887776 8999999999999998666 999999999983100
Q ss_pred -----eeeE-----------------------------EecCCCccEEEEEeeC--CEEEEEeCCCcEEEEECCCCCccE
Q 014934 241 -----KRVR-----------------------------TMEGHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQEDFV 284 (415)
Q Consensus 241 -----~~~~-----------------------------~l~~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~ 284 (415)
..++ ...+|......++.++ +.+++++.|+.+++|+ ..+ +.
T Consensus 325 lPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k-~~ 401 (626)
T KOG2106|consen 325 LPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHK-LE 401 (626)
T ss_pred CchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCc-ee
Confidence 0011 1124666666777663 6899999999999999 222 22
Q ss_pred EEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEE
Q 014934 285 SKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWN 364 (415)
Q Consensus 285 ~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd 364 (415)
- -.-...++.++.|+|.| .+|.|...|...|.|.++...+..-.. +..+.+++|+|+|. +||.|+ .|+.|++|-
T Consensus 402 w-t~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~-~lAvgs--~d~~iyiy~ 475 (626)
T KOG2106|consen 402 W-TKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGA-FLAVGS--HDNHIYIYR 475 (626)
T ss_pred E-EEEecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCC-EEEEec--CCCeEEEEE
Confidence 1 22234688999999999 999999999999999999766655545 88999999999998 777776 999999999
Q ss_pred CCCCcE-EEEee--CCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCC
Q 014934 365 TTTNTH-LSCMD--TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTM 411 (415)
Q Consensus 365 ~~t~~~-~~~~~--~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~ 411 (415)
+..... ...+. ++++|+.+.|++|+++|.+ .+-|-.|..| .++.
T Consensus 476 Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~--~S~d~eiLyW-~~~~ 522 (626)
T KOG2106|consen 476 VSANGRKYSRVGKCSGSPITHLDWSSDSQFLVS--NSGDYEILYW-KPSE 522 (626)
T ss_pred ECCCCcEEEEeeeecCceeEEeeecCCCceEEe--ccCceEEEEE-cccc
Confidence 876443 33332 5689999999999999999 5568899999 4443
No 144
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.83 E-value=7.8e-19 Score=156.05 Aligned_cols=239 Identities=18% Similarity=0.340 Sum_probs=183.6
Q ss_pred CCCCCCcceeEeecCCC------cEEEEEcCCeEEEEECCC--CCeEEeEe------cCCCCCeEEEEEcC-CCCeEEEE
Q 014934 162 PALQDDFYLNLVDWSSH------NVLAVGLGNCVYLWNACS--SKVTKLCD------LGIDDSVCSVGWAN-RNTHLAVG 226 (415)
Q Consensus 162 ~~l~~~~~i~~l~ws~~------~~la~~~d~~V~iwd~~~--~~~~~~~~------~~~~~~V~~v~~sp-~g~~la~g 226 (415)
+.+...|.++.+-|.|. .+||+ .+..+++|.+.. +++..... ..+..+++++.|+. +.++|.+.
T Consensus 91 a~fd~~YP~tK~~wiPd~~g~~pdlLAT-s~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtS 169 (364)
T KOG0290|consen 91 ANFDHPYPVTKLMWIPDSKGVYPDLLAT-SSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTS 169 (364)
T ss_pred CCCCCCCCccceEecCCccccCcchhhc-ccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEee
Confidence 33556678889999983 24444 477999999874 22211111 14467899999997 67899999
Q ss_pred ECCCcEEEEECCCCe---eeEEecCCCccEEEEEeeC---CEEEEEeCCCcEEEEECCCCCccEEEeccc--cCCeEEEE
Q 014934 227 TSHGKVQIWDASRCK---RVRTMEGHRLRVGALAWSS---SLLSSGSRDKSILQRDIRAQEDFVSKLSGH--KSEVCGLK 298 (415)
Q Consensus 227 ~~dg~V~iwd~~~~~---~~~~l~~h~~~V~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h--~~~V~~l~ 298 (415)
+-|-+..|||++++. ....+-.|...|..++|.. +.|++.+.||.++++|+|..++....+... ..+...|+
T Consensus 170 SiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLs 249 (364)
T KOG0290|consen 170 SIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLS 249 (364)
T ss_pred cccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeec
Confidence 999999999999863 3556778999999999983 799999999999999999988654444432 45778899
Q ss_pred EeC-CCCEEEEEe-CCCcEEEEECCCC-ceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCc------
Q 014934 299 WSY-DNRELASGG-NDNRLFVWNQHST-QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNT------ 369 (415)
Q Consensus 299 ~sp-dg~~lasg~-~dg~I~iwd~~~~-~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~------ 369 (415)
|++ |-+++|+-. +.+.|.|.|++.. .++.++++|++.|++|+|.|+....++++| .|..+.+||+.+.-
T Consensus 250 wnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaG--DD~qaliWDl~q~~~~~~~d 327 (364)
T KOG0290|consen 250 WNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAG--DDCQALIWDLQQMPRENGED 327 (364)
T ss_pred cCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecC--CcceEEEEecccccccCCCC
Confidence 997 567888744 4567999999864 788999999999999999999999999998 89999999997632
Q ss_pred EEEEeeCCCCEEEEEECC-CCCeEEEEEecCCCcEEEE
Q 014934 370 HLSCMDTGSQVCNLVWSK-NVNELVSTHGYSQNQIIVW 406 (415)
Q Consensus 370 ~~~~~~~~~~V~~l~~s~-~~~~l~s~~g~~dg~I~vw 406 (415)
++..+..+..|..+.|++ ...+++.+. ++++.+-
T Consensus 328 Pilay~a~~EVNqi~Ws~~~~Dwiai~~---~kkleiL 362 (364)
T KOG0290|consen 328 PILAYTAGGEVNQIQWSSSQPDWIAICF---GKKLEIL 362 (364)
T ss_pred chhhhhccceeeeeeecccCCCEEEEEe---cCeeeEE
Confidence 233334678899999995 566777743 3455554
No 145
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.83 E-value=2.5e-19 Score=173.37 Aligned_cols=118 Identities=18% Similarity=0.374 Sum_probs=102.1
Q ss_pred CeEEEEEeC-CCCEEEEEeCCCcEEEEECCCC-------ceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEE
Q 014934 293 EVCGLKWSY-DNRELASGGNDNRLFVWNQHST-------QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWN 364 (415)
Q Consensus 293 ~V~~l~~sp-dg~~lasg~~dg~I~iwd~~~~-------~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd 364 (415)
.|+.+.|.| |...||+++.||.|++|.+..+ .+...+..|...|+.+.|+|-...+|++++ .|.+|++||
T Consensus 629 ~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~as--yd~Ti~lWD 706 (1012)
T KOG1445|consen 629 LVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVAS--YDSTIELWD 706 (1012)
T ss_pred eeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhh--ccceeeeee
Confidence 366778888 6778999999999999998653 456677889999999999998888999988 999999999
Q ss_pred CCCCcEEEEe-eCCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCCccc
Q 014934 365 TTTNTHLSCM-DTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKV 414 (415)
Q Consensus 365 ~~t~~~~~~~-~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~~l 414 (415)
+.+++....+ .|..+|.+++|||+|+.+++ -..||+|+||+-.+.++-
T Consensus 707 l~~~~~~~~l~gHtdqIf~~AWSpdGr~~At--VcKDg~~rVy~Prs~e~p 755 (1012)
T KOG1445|consen 707 LANAKLYSRLVGHTDQIFGIAWSPDGRRIAT--VCKDGTLRVYEPRSREQP 755 (1012)
T ss_pred hhhhhhhheeccCcCceeEEEECCCCcceee--eecCceEEEeCCCCCCCc
Confidence 9999876665 47899999999999999999 568999999998887653
No 146
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.83 E-value=3.2e-18 Score=154.46 Aligned_cols=226 Identities=23% Similarity=0.371 Sum_probs=172.8
Q ss_pred CcEEEEEcCCeEEEEECCCCCeEEeEec----CCCCCeEEEEEcCC----CCeEEEEECCCcEEEEECCCCeeeEEecCC
Q 014934 178 HNVLAVGLGNCVYLWNACSSKVTKLCDL----GIDDSVCSVGWANR----NTHLAVGTSHGKVQIWDASRCKRVRTMEGH 249 (415)
Q Consensus 178 ~~~la~~~d~~V~iwd~~~~~~~~~~~~----~~~~~V~~v~~sp~----g~~la~g~~dg~V~iwd~~~~~~~~~l~~h 249 (415)
..++|+..++.+.+|+....-..++++. ++.+....++|+-+ ..++|+|+.-|.|+|.|+.++++...+.+|
T Consensus 55 ~~vfatvG~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~gh 134 (385)
T KOG1034|consen 55 PQVFATVGGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGH 134 (385)
T ss_pred CceEEEeCCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceecc
Confidence 3577777888999998765443333322 46778888999864 348999999999999999999999999999
Q ss_pred CccEEEEEee---CCEEEEEeCCCcEEEEECCCCCccEEEe---ccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Q 014934 250 RLRVGALAWS---SSLLSSGSRDKSILQRDIRAQEDFVSKL---SGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHST 323 (415)
Q Consensus 250 ~~~V~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~---~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~ 323 (415)
...|+.+.++ +++++++|.|..|++|++++.. ++..+ .+|..+|.++.|+++|.+|+++|.|..|++|++...
T Consensus 135 G~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~-Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~ 213 (385)
T KOG1034|consen 135 GGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDV-CVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVK 213 (385)
T ss_pred CccchhhhcCCCCCcEEEEecCCceEEEEeccCCe-EEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChh
Confidence 9999999998 4799999999999999999987 45544 589999999999999999999999999999999721
Q ss_pred c---------------------------eeE-EeccCC------------------------------------------
Q 014934 324 Q---------------------------PVL-KYCEHT------------------------------------------ 333 (415)
Q Consensus 324 ~---------------------------~~~-~~~~h~------------------------------------------ 333 (415)
+ +.. +-.-|.
T Consensus 214 ~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es 293 (385)
T KOG1034|consen 214 EFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPES 293 (385)
T ss_pred HHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCcc
Confidence 0 000 000011
Q ss_pred ------------CcEEE--EEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEE--Ee---eCCCCEEEEEECCCCCeEEE
Q 014934 334 ------------AAVKA--IAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLS--CM---DTGSQVCNLVWSKNVNELVS 394 (415)
Q Consensus 334 ------------~~V~~--l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~--~~---~~~~~V~~l~~s~~~~~l~s 394 (415)
..|+- .+|.|.++ .||.|+ +.|.|.+||+...++.. ++ ..+..|...+|+.|+..|+.
T Consensus 294 ~~Ti~~~~~~~~c~iWfirf~~d~~~~-~la~gn--q~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~ 370 (385)
T KOG1034|consen 294 ATTILGEFDYPMCDIWFIRFAFDPWQK-MLALGN--QSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVL 370 (385)
T ss_pred ceeeeeEeccCccceEEEEEeecHHHH-HHhhcc--CCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEE
Confidence 11222 23445554 566665 89999999998766521 11 24577999999999999998
Q ss_pred EEecCCCcEEEEECC
Q 014934 395 THGYSQNQIIVWRYP 409 (415)
Q Consensus 395 ~~g~~dg~I~vw~~~ 409 (415)
-.+|+.|.-||.-
T Consensus 371 --vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 371 --VCDDGTVWRWDRV 383 (385)
T ss_pred --EeCCCcEEEEEee
Confidence 5689999999853
No 147
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.82 E-value=8.4e-19 Score=171.76 Aligned_cols=236 Identities=17% Similarity=0.309 Sum_probs=178.8
Q ss_pred EeecCC-CcEEEE-EcCCeEEEEECCCCC----eEEeEecCCCCCeEEEEEcCC-----------CCeEEEEECCCcEEE
Q 014934 172 LVDWSS-HNVLAV-GLGNCVYLWNACSSK----VTKLCDLGIDDSVCSVGWANR-----------NTHLAVGTSHGKVQI 234 (415)
Q Consensus 172 ~l~ws~-~~~la~-~~d~~V~iwd~~~~~----~~~~~~~~~~~~V~~v~~sp~-----------g~~la~g~~dg~V~i 234 (415)
.+.|++ ...|.+ -.|..+||||+.+-+ +...+ -|...|.+|.--|- ...+.+++.||+|++
T Consensus 329 A~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~l--yHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRl 406 (1080)
T KOG1408|consen 329 ACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSML--YHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRL 406 (1080)
T ss_pred EEEecCCCceEEEEEcCceEEEEeccccccccceeeee--eccceeeeeccccccccCcccccCCccceeEecCCCcEEE
Confidence 566887 444444 468899999998743 22222 57788888776551 124889999999999
Q ss_pred EECCCCeeeEE-----e--------------------------------cCCCccEEEEEee--CCEEEEEeCCCcEEEE
Q 014934 235 WDASRCKRVRT-----M--------------------------------EGHRLRVGALAWS--SSLLSSGSRDKSILQR 275 (415)
Q Consensus 235 wd~~~~~~~~~-----l--------------------------------~~h~~~V~~l~~~--~~~l~sgs~dg~I~iw 275 (415)
||+..+..-.+ + -+....+.+++.+ +.+|++|.+-|+|++|
T Consensus 407 W~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy 486 (1080)
T KOG1408|consen 407 WDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVY 486 (1080)
T ss_pred eecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEE
Confidence 99864211000 0 0123457888887 5799999999999999
Q ss_pred ECCCCCccEEEeccccCCeEEEEEeC---CCCEEEEEeCCCcEEEEECCC-CceeEEeccCCCcEEEEEEcCCC--C---
Q 014934 276 DIRAQEDFVSKLSGHKSEVCGLKWSY---DNRELASGGNDNRLFVWNQHS-TQPVLKYCEHTAAVKAIAWSPHL--H--- 346 (415)
Q Consensus 276 d~~~~~~~~~~~~~h~~~V~~l~~sp---dg~~lasg~~dg~I~iwd~~~-~~~~~~~~~h~~~V~~l~~sp~~--~--- 346 (415)
|+..-+ ....+.+|..+|.||.++- ..++||+++.|..|+|||+.. ..+++++.+|...|+++.|.-.| .
T Consensus 487 ~Lq~l~-~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~Mi 565 (1080)
T KOG1408|consen 487 DLQELE-YTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMI 565 (1080)
T ss_pred Eehhhh-hhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEE
Confidence 998876 5677889999999999984 457899999999999999853 45667777777777777665433 1
Q ss_pred -------------------------------------------cEEEEEcCCCCCeEEEEECCCCcEEEEee----CCCC
Q 014934 347 -------------------------------------------GLLASGGGTADRCIRFWNTTTNTHLSCMD----TGSQ 379 (415)
Q Consensus 347 -------------------------------------------~llasggg~~d~~I~iwd~~t~~~~~~~~----~~~~ 379 (415)
.++++++ .|+.|+|||+.+|+..+.++ +.+.
T Consensus 566 scGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~c--QDrnirif~i~sgKq~k~FKgs~~~eG~ 643 (1080)
T KOG1408|consen 566 SCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVC--QDRNIRIFDIESGKQVKSFKGSRDHEGD 643 (1080)
T ss_pred eccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEe--cccceEEEeccccceeeeecccccCCCc
Confidence 1344444 89999999999999999886 4466
Q ss_pred EEEEEECCCCCeEEEEEecCCCcEEEEECCCCccc
Q 014934 380 VCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKV 414 (415)
Q Consensus 380 V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~~l 414 (415)
...+...|.|.||++ .++|.+|.++||-+++.|
T Consensus 644 lIKv~lDPSgiY~at--Scsdktl~~~Df~sgEcv 676 (1080)
T KOG1408|consen 644 LIKVILDPSGIYLAT--SCSDKTLCFVDFVSGECV 676 (1080)
T ss_pred eEEEEECCCccEEEE--eecCCceEEEEeccchhh
Confidence 888999999999999 678999999999998765
No 148
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.82 E-value=7.5e-19 Score=156.03 Aligned_cols=195 Identities=25% Similarity=0.347 Sum_probs=162.5
Q ss_pred ceeEeecCC-CcEEEEEcCCeEEEEECCCCCe-EEeEec----CCCCCeEEEEEcC--CCCeEEEEECCCcEEEEECCCC
Q 014934 169 YLNLVDWSS-HNVLAVGLGNCVYLWNACSSKV-TKLCDL----GIDDSVCSVGWAN--RNTHLAVGTSHGKVQIWDASRC 240 (415)
Q Consensus 169 ~i~~l~ws~-~~~la~~~d~~V~iwd~~~~~~-~~~~~~----~~~~~V~~v~~sp--~g~~la~g~~dg~V~iwd~~~~ 240 (415)
.++|+-|.| +.-+++-.++.|.+|++..+.. ...+.. ++....++-+|+| +|+.+++ ..|++++.||+++.
T Consensus 125 ~i~cvew~Pns~klasm~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~t-t~d~tl~~~D~RT~ 203 (370)
T KOG1007|consen 125 KINCVEWEPNSDKLASMDDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVAT-TSDSTLQFWDLRTM 203 (370)
T ss_pred ceeeEEEcCCCCeeEEeccCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEE-eCCCcEEEEEccch
Confidence 689999999 6677777799999999987754 222211 3456788899998 7788876 57889999999988
Q ss_pred eeeEEec-CCCccEEEEEeeC---CEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCC-CCEEEEEeCCCcE
Q 014934 241 KRVRTME-GHRLRVGALAWSS---SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYD-NRELASGGNDNRL 315 (415)
Q Consensus 241 ~~~~~l~-~h~~~V~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd-g~~lasg~~dg~I 315 (415)
++...++ .|...|..+.|+| .+|++|+.||.|++||.|..+.++..+.+|...|.++.|+|. .+++++|+.|..|
T Consensus 204 ~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V 283 (370)
T KOG1007|consen 204 KKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAV 283 (370)
T ss_pred hhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCcee
Confidence 7666554 7889999999996 589999999999999999998889999999999999999994 5677899999999
Q ss_pred EEEECCCC-----------------------------ceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECC
Q 014934 316 FVWNQHST-----------------------------QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTT 366 (415)
Q Consensus 316 ~iwd~~~~-----------------------------~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~ 366 (415)
.+|...+- ..+.++..|...|.+++|+....+++|+-+ .||.+.|=++.
T Consensus 284 ~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLS--YDGRviIs~V~ 361 (370)
T KOG1007|consen 284 NLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLS--YDGRVIISSVP 361 (370)
T ss_pred EEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEec--cCceEEeecCC
Confidence 99976320 124567889999999999999999999998 99999886664
No 149
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.82 E-value=3.7e-19 Score=168.00 Aligned_cols=219 Identities=16% Similarity=0.253 Sum_probs=179.5
Q ss_pred CCCcceeEeecCCCcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeE
Q 014934 165 QDDFYLNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVR 244 (415)
Q Consensus 165 ~~~~~i~~l~ws~~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~ 244 (415)
...++|+|..++ -.++++|.+++|+|||++...+.+.+. +|.+.|++|.+.....+||+++..|.|.|..+.++....
T Consensus 80 d~~~Cv~~~s~S-~y~~sgG~~~~Vkiwdl~~kl~hr~lk-dh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt 157 (673)
T KOG4378|consen 80 DNAFCVACASQS-LYEISGGQSGCVKIWDLRAKLIHRFLK-DHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTT 157 (673)
T ss_pred chHHHHhhhhcc-eeeeccCcCceeeehhhHHHHHhhhcc-CCcceeEEEEecCCcceeEEeccCCcEEEEecccCcccc
Confidence 356788888877 344555578999999999666666655 899999999999999999999999999999999988777
Q ss_pred EecCC-CccEEEEEeeC---CEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeC-CCCEEEEEeCCCcEEEEE
Q 014934 245 TMEGH-RLRVGALAWSS---SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSY-DNRELASGGNDNRLFVWN 319 (415)
Q Consensus 245 ~l~~h-~~~V~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~lasg~~dg~I~iwd 319 (415)
.|... ...|.-+.+++ .+|.+++.+|.|.+||+............|..+..+|+|+| +..+|++.|.|.+|.+||
T Consensus 158 ~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD 237 (673)
T KOG4378|consen 158 TFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYD 237 (673)
T ss_pred ceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEee
Confidence 77644 34455788883 68889999999999999988876777789999999999999 556788999999999999
Q ss_pred CCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCc-EEEEee-CCCCEEEEEECCCC
Q 014934 320 QHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNT-HLSCMD-TGSQVCNLVWSKNV 389 (415)
Q Consensus 320 ~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~-~~~~~~-~~~~V~~l~~s~~~ 389 (415)
....+....+ ....+...++|.++|. +|+.|. ..|.|..||++.-+ ++..+. |...|++++|-+.-
T Consensus 238 ~~s~~s~~~l-~y~~Plstvaf~~~G~-~L~aG~--s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 238 IRSQASTDRL-TYSHPLSTVAFSECGT-YLCAGN--SKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred ccccccccee-eecCCcceeeecCCce-EEEeec--CCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 9987776666 4566889999999997 555554 89999999998754 444443 67779999998764
No 150
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.81 E-value=9.1e-19 Score=164.04 Aligned_cols=199 Identities=22% Similarity=0.288 Sum_probs=165.7
Q ss_pred CCCCeEEEEEcCCC--CeEEEEECCCcEEEEECCCC----eeeEEecCCCccEEEEEeeC---CEEEEEeCCCcEEEEEC
Q 014934 207 IDDSVCSVGWANRN--THLAVGTSHGKVQIWDASRC----KRVRTMEGHRLRVGALAWSS---SLLSSGSRDKSILQRDI 277 (415)
Q Consensus 207 ~~~~V~~v~~sp~g--~~la~g~~dg~V~iwd~~~~----~~~~~l~~h~~~V~~l~~~~---~~l~sgs~dg~I~iwd~ 277 (415)
+.+.|++++|+|.. +.+|+|...|.|-+||+.+. ..+..+..|.++|.+|.|+| ..+++.|.||+|++-|+
T Consensus 185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~ 264 (498)
T KOG4328|consen 185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDF 264 (498)
T ss_pred cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeee
Confidence 46899999999954 58999999999999999532 34556788999999999984 68999999999999999
Q ss_pred CCCCc-cEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCce-eEEeccCCCcEEEEEEcCCCCcEEEEEcCC
Q 014934 278 RAQED-FVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQP-VLKYCEHTAAVKAIAWSPHLHGLLASGGGT 355 (415)
Q Consensus 278 ~~~~~-~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~-~~~~~~h~~~V~~l~~sp~~~~llasggg~ 355 (415)
....- .+.........++++.|+.+...++.|++=|.+.+||++++.. ...+.-|...|..++++|...++++++|
T Consensus 265 ~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s-- 342 (498)
T KOG4328|consen 265 EGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATAS-- 342 (498)
T ss_pred cchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecc--
Confidence 87641 1222333455688899998888888888888999999998754 6667779999999999999999999998
Q ss_pred CCCeEEEEECCCC--c---EEEEeeCCCCEEEEEECCCCCeEEEEEecCCCcEEEEECC
Q 014934 356 ADRCIRFWNTTTN--T---HLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYP 409 (415)
Q Consensus 356 ~d~~I~iwd~~t~--~---~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~ 409 (415)
.|++.+|||++.- + .+..+.|...|.++.|||.+-.|+++ +.|+.|+|||..
T Consensus 343 ~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT--~~D~~IRv~dss 399 (498)
T KOG4328|consen 343 LDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTT--CQDNEIRVFDSS 399 (498)
T ss_pred cCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEee--ccCCceEEeecc
Confidence 9999999999852 2 36677888999999999998888885 478999999984
No 151
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.81 E-value=4.1e-18 Score=151.38 Aligned_cols=220 Identities=19% Similarity=0.329 Sum_probs=170.7
Q ss_pred eEEEEECCCCC---------eEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCee-eEEec-----CCCcc
Q 014934 188 CVYLWNACSSK---------VTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKR-VRTME-----GHRLR 252 (415)
Q Consensus 188 ~V~iwd~~~~~---------~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~-~~~l~-----~h~~~ 252 (415)
.+.||.+.... ++..+...+-+.|.||.|.|++..+|+-. |..|.+|++..+.. +..+. +|...
T Consensus 94 ~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ 172 (370)
T KOG1007|consen 94 GAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHS 172 (370)
T ss_pred eEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccce
Confidence 57899875421 22222223456899999999999998755 78899999987765 33332 35667
Q ss_pred EEEEEeeC---CEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCE-EEEEeCCCcEEEEECCC-CceeE
Q 014934 253 VGALAWSS---SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRE-LASGGNDNRLFVWNQHS-TQPVL 327 (415)
Q Consensus 253 V~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~-lasg~~dg~I~iwd~~~-~~~~~ 327 (415)
.++-+|+| ..-+....|+++..||+|+..+....-.+|.+.|..+.|+|+.++ ||+|+.||.|+|||.+. ..+++
T Consensus 173 ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~ 252 (370)
T KOG1007|consen 173 FTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQ 252 (370)
T ss_pred ecccccCCCCccceEEEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCcccc
Confidence 78888985 233444578999999999988766777799999999999998764 78899999999999985 46899
Q ss_pred EeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCc-----------------------------EEEEee-CC
Q 014934 328 KYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNT-----------------------------HLSCMD-TG 377 (415)
Q Consensus 328 ~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~-----------------------------~~~~~~-~~ 377 (415)
.+.+|...|.++.|+|.-..|+.+|| .|..|.+|....-. .+.+++ |.
T Consensus 253 el~~HsHWvW~VRfn~~hdqLiLs~~--SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehE 330 (370)
T KOG1007|consen 253 ELPGHSHWVWAVRFNPEHDQLILSGG--SDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHE 330 (370)
T ss_pred ccCCCceEEEEEEecCccceEEEecC--CCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccc
Confidence 99999999999999999888999987 89999999764210 122232 66
Q ss_pred CCEEEEEECCCCCeEEEEEecCCCcEEEEECCCC
Q 014934 378 SQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTM 411 (415)
Q Consensus 378 ~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~ 411 (415)
..|++++||.-..+++++- +-||.+.|=+++..
T Consensus 331 DSVY~~aWSsadPWiFASL-SYDGRviIs~V~r~ 363 (370)
T KOG1007|consen 331 DSVYALAWSSADPWIFASL-SYDGRVIISSVPRF 363 (370)
T ss_pred cceEEEeeccCCCeeEEEe-ccCceEEeecCChh
Confidence 7899999999999988864 56899998887653
No 152
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.79 E-value=1.7e-17 Score=147.62 Aligned_cols=243 Identities=16% Similarity=0.291 Sum_probs=184.4
Q ss_pred CcceeEeecCC----CcEEEEEc-----CCeEEEE--ECCCCCeEEeEecCCCCCeEEEEEcCCC-----CeEEEEECCC
Q 014934 167 DFYLNLVDWSS----HNVLAVGL-----GNCVYLW--NACSSKVTKLCDLGIDDSVCSVGWANRN-----THLAVGTSHG 230 (415)
Q Consensus 167 ~~~i~~l~ws~----~~~la~~~-----d~~V~iw--d~~~~~~~~~~~~~~~~~V~~v~~sp~g-----~~la~g~~dg 230 (415)
.+.+..++|+. ...||+|+ .+.|.|. +..+++.+..-.++|.-+++.+-|.|+. ++||+. +-
T Consensus 44 p~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs--~D 121 (364)
T KOG0290|consen 44 PWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATS--SD 121 (364)
T ss_pred CCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhcc--cC
Confidence 45678899993 66888884 2556654 4556677766667899999999999975 356653 33
Q ss_pred cEEEEECCCCe----eeEEe-----cCCCccEEEEEee---CCEEEEEeCCCcEEEEECCCCC--ccEEEeccccCCeEE
Q 014934 231 KVQIWDASRCK----RVRTM-----EGHRLRVGALAWS---SSLLSSGSRDKSILQRDIRAQE--DFVSKLSGHKSEVCG 296 (415)
Q Consensus 231 ~V~iwd~~~~~----~~~~l-----~~h~~~V~~l~~~---~~~l~sgs~dg~I~iwd~~~~~--~~~~~~~~h~~~V~~ 296 (415)
.+++|.+...+ +...+ ..+.+++++..|+ ++++.+.+-|.+..|||++.+. .....+.+|..+|..
T Consensus 122 ~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~D 201 (364)
T KOG0290|consen 122 FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYD 201 (364)
T ss_pred eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeE
Confidence 79999986321 11112 2467899999998 7999999999999999999863 245678899999999
Q ss_pred EEEeCCC-CEEEEEeCCCcEEEEECCCCceeEE-ecc--CCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCC-cEE
Q 014934 297 LKWSYDN-RELASGGNDNRLFVWNQHSTQPVLK-YCE--HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTN-THL 371 (415)
Q Consensus 297 l~~spdg-~~lasg~~dg~I~iwd~~~~~~~~~-~~~--h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~-~~~ 371 (415)
++|...+ +.||+.|.||.|++||++..+--.. ++. ...+...++|++...+++|+-. .....|.|.|++.. ..+
T Consensus 202 Iaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~-~dS~~V~iLDiR~P~tpv 280 (364)
T KOG0290|consen 202 IAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFA-MDSNKVVILDIRVPCTPV 280 (364)
T ss_pred EEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhh-cCCceEEEEEecCCCcce
Confidence 9999854 5789999999999999987643222 222 2467889999999999998875 24567999999864 445
Q ss_pred EEee-CCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCCcc
Q 014934 372 SCMD-TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSK 413 (415)
Q Consensus 372 ~~~~-~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~~ 413 (415)
..+. |.+.|.+++|.|....-+++ +++|.+..+||++++-+
T Consensus 281 a~L~~H~a~VNgIaWaPhS~~hict-aGDD~qaliWDl~q~~~ 322 (364)
T KOG0290|consen 281 ARLRNHQASVNGIAWAPHSSSHICT-AGDDCQALIWDLQQMPR 322 (364)
T ss_pred ehhhcCcccccceEecCCCCceeee-cCCcceEEEEecccccc
Confidence 5554 88999999999987655555 56899999999988743
No 153
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=3.5e-17 Score=159.97 Aligned_cols=235 Identities=20% Similarity=0.281 Sum_probs=186.5
Q ss_pred CCCcceeEeecCC-CcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeee
Q 014934 165 QDDFYLNLVDWSS-HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRV 243 (415)
Q Consensus 165 ~~~~~i~~l~ws~-~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~ 243 (415)
..+-.+..++|.+ ++++.++.+|.|.-||+.+++.....+ ...+.|.+++.+|.+..+++|+.||.+.+++...++..
T Consensus 67 ~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~~~d-~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~ 145 (691)
T KOG2048|consen 67 PEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQKYNID-SNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKIT 145 (691)
T ss_pred CCCCceeeEEEccCCeEEeecCCceEEEEecccCceeEEec-CCCcceeEEEeCCccceEEeecCCceEEEEecCCceEE
Confidence 4466799999997 889999999999999999999888776 55789999999999999999999998888887776543
Q ss_pred --EEecCCCccEEEEEeeC--CEEEEEeCCCcEEEEECCCCCccEEE----ecc----ccCCeEEEEEeCCCCEEEEEeC
Q 014934 244 --RTMEGHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQEDFVSK----LSG----HKSEVCGLKWSYDNRELASGGN 311 (415)
Q Consensus 244 --~~l~~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~----~~~----h~~~V~~l~~spdg~~lasg~~ 311 (415)
+.+....++|.+++|++ ..+++|+.||.|++||...+.. ++. +.+ ...-|+++.+-.+ ..||+|..
T Consensus 146 ~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t-~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS 223 (691)
T KOG2048|consen 146 YKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQT-LHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDS 223 (691)
T ss_pred EEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCce-EEEeeecccccccCCceEEEEEEEeec-CcEEEecC
Confidence 34455679999999995 5689999999999999998874 221 111 2223677777644 47899999
Q ss_pred CCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEE-----EeeCCCCEEEEEEC
Q 014934 312 DNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLS-----CMDTGSQVCNLVWS 386 (415)
Q Consensus 312 dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~-----~~~~~~~V~~l~~s 386 (415)
-|.|.+||...+..++.+..|.+.|.+++..+++..++.+| .|+.|.-+...+.+.-. ...|...|.+++..
T Consensus 224 ~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaG---vd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~ 300 (691)
T KOG2048|consen 224 AGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAG---VDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVI 300 (691)
T ss_pred CceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEcc---CCCceEEEEecCCccceeeeccccCCcccceeeeee
Confidence 99999999999999999999999999999999987555554 79998888877764311 11266778888888
Q ss_pred CCCCeEEEEEecCCCcEEEEECC
Q 014934 387 KNVNELVSTHGYSQNQIIVWRYP 409 (415)
Q Consensus 387 ~~~~~l~s~~g~~dg~I~vw~~~ 409 (415)
++ .|++ |+.|..+.+-...
T Consensus 301 ~~--~l~s--gG~d~~l~i~~s~ 319 (691)
T KOG2048|consen 301 EN--ALIS--GGRDFTLAICSSR 319 (691)
T ss_pred cc--eEEe--cceeeEEEEcccc
Confidence 77 5666 7788777765443
No 154
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.79 E-value=2.2e-17 Score=165.23 Aligned_cols=249 Identities=17% Similarity=0.297 Sum_probs=188.2
Q ss_pred CCCceeccCCCCCCCcceeEeecCC--CcEEEEE-cCCeEEEEECCCCCeE-----EeEecCCCCCeEEEEEcCCC--Ce
Q 014934 153 RSPYKILDAPALQDDFYLNLVDWSS--HNVLAVG-LGNCVYLWNACSSKVT-----KLCDLGIDDSVCSVGWANRN--TH 222 (415)
Q Consensus 153 ~~p~~~ld~~~l~~~~~i~~l~ws~--~~~la~~-~d~~V~iwd~~~~~~~-----~~~~~~~~~~V~~v~~sp~g--~~ 222 (415)
..|..+++.+. .+.|+.++| .++|++| .+|.|.+||+..+... ......|.++|+.+.|..+. .-
T Consensus 233 ~~Pe~~~~~~s-----~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~ 307 (555)
T KOG1587|consen 233 NTPELVLESPS-----EVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTE 307 (555)
T ss_pred CCceEEEecCC-----ceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCc
Confidence 56666666643 488999999 6777777 4799999999876541 22223788999999998754 44
Q ss_pred EEEEECCCcEEEEECCCCee-eE-----Eec------CCCccEEEEEee---CCEEEEEeCCCcEEEEECC---CCC---
Q 014934 223 LAVGTSHGKVQIWDASRCKR-VR-----TME------GHRLRVGALAWS---SSLLSSGSRDKSILQRDIR---AQE--- 281 (415)
Q Consensus 223 la~g~~dg~V~iwd~~~~~~-~~-----~l~------~h~~~V~~l~~~---~~~l~sgs~dg~I~iwd~~---~~~--- 281 (415)
+++++.||.|..|+++.-.. +. ... .-...+++++|. +..++.|+.+|.|..-+-. ...
T Consensus 308 f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~ 387 (555)
T KOG1587|consen 308 FFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVS 387 (555)
T ss_pred eEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccccc
Confidence 99999999999998764321 11 111 123467888887 6899999999999873322 222
Q ss_pred -ccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECC-CCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCe
Q 014934 282 -DFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQH-STQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRC 359 (415)
Q Consensus 282 -~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~-~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~ 359 (415)
+....+..|.+.|.++.++|-+..++..+.|..|+||... ...++..+..+...|++++|||....+++++. .||.
T Consensus 388 ~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d--~~G~ 465 (555)
T KOG1587|consen 388 YKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVD--GDGN 465 (555)
T ss_pred ccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEc--CCCc
Confidence 1233556788999999999977665554449999999988 77899999888889999999999998999987 7999
Q ss_pred EEEEECCCC--cEEEEee-CCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCC
Q 014934 360 IRFWNTTTN--THLSCMD-TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPT 410 (415)
Q Consensus 360 I~iwd~~t~--~~~~~~~-~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s 410 (415)
|.+||+... .++.+.. .....+.+.|++.|+.|++ |...|.+.+|+++.
T Consensus 466 l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lav--Gd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 466 LDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAV--GDANGTTHILKLSE 517 (555)
T ss_pred eehhhhhccccCCcccccccccccceeecCCCCcEEEE--ecCCCcEEEEEcCc
Confidence 999999754 3344443 3445667889999999999 99999999999963
No 155
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=9.2e-18 Score=152.30 Aligned_cols=188 Identities=20% Similarity=0.327 Sum_probs=156.3
Q ss_pred CeEEEEECCCcEEEEECCCCeeeEEecCCCccEEEEEee----CCEEEEEeCCCcEEEEECCCCCcc-EEEecccc-CCe
Q 014934 221 THLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWS----SSLLSSGSRDKSILQRDIRAQEDF-VSKLSGHK-SEV 294 (415)
Q Consensus 221 ~~la~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~----~~~l~sgs~dg~I~iwd~~~~~~~-~~~~~~h~-~~V 294 (415)
..+|++...|.|++||..+++.+..++++...+..+.|. ++.+.+|+.||+|++||+|...+. ...+..+. .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 579999999999999999999999999999999999986 589999999999999999987643 33344454 466
Q ss_pred EEEEEeCCCCEEEEEe----CCCcEEEEECCCCce-eEEe-ccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCC
Q 014934 295 CGLKWSYDNRELASGG----NDNRLFVWNQHSTQP-VLKY-CEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTN 368 (415)
Q Consensus 295 ~~l~~spdg~~lasg~----~dg~I~iwd~~~~~~-~~~~-~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~ 368 (415)
.+++.+-.++++++|. .|-.|.+||++..+. +..+ +.|...|++|.|+|....+|++|+ .||.|.+||+...
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGS--vDGLvnlfD~~~d 198 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGS--VDGLVNLFDTKKD 198 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeec--ccceEEeeecCCC
Confidence 7777777888898875 366799999998765 5444 479999999999999999999998 9999999999754
Q ss_pred ----cEEEEeeCCCCEEEEEECCCC--CeEEEEEecCCCcEEEEECCCCcc
Q 014934 369 ----THLSCMDTGSQVCNLVWSKNV--NELVSTHGYSQNQIIVWRYPTMSK 413 (415)
Q Consensus 369 ----~~~~~~~~~~~V~~l~~s~~~--~~l~s~~g~~dg~I~vw~~~s~~~ 413 (415)
.++..+.+++.|..+.|..++ +....+ ..+.+.+|+++.+..
T Consensus 199 ~EeDaL~~viN~~sSI~~igw~~~~ykrI~clT---H~Etf~~~ele~~~~ 246 (376)
T KOG1188|consen 199 NEEDALLHVINHGSSIHLIGWLSKKYKRIMCLT---HMETFAIYELEDGSE 246 (376)
T ss_pred cchhhHHHhhcccceeeeeeeecCCcceEEEEE---ccCceeEEEccCCCh
Confidence 356677889999999999988 655554 467899999987754
No 156
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=1.1e-17 Score=151.82 Aligned_cols=187 Identities=16% Similarity=0.282 Sum_probs=141.9
Q ss_pred cEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcC--CCCeEEEEECCCcEEEEECCCCeeeEE--ecCCC-cc
Q 014934 179 NVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWAN--RNTHLAVGTSHGKVQIWDASRCKRVRT--MEGHR-LR 252 (415)
Q Consensus 179 ~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp--~g~~la~g~~dg~V~iwd~~~~~~~~~--l~~h~-~~ 252 (415)
+.+|++ +.+.|++||..+++..+.+. ++...+..+.|.. .+..+.+|+.||+|++||++....+.. +..+. .+
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk-~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~ 119 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFK-GPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTP 119 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheec-CCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCc
Confidence 456777 57999999999999888887 7788888999987 457889999999999999987655443 34454 46
Q ss_pred EEEEEee--CCEEEEEe----CCCcEEEEECCCCCccE-EEeccccCCeEEEEEeC-CCCEEEEEeCCCcEEEEECCCCc
Q 014934 253 VGALAWS--SSLLSSGS----RDKSILQRDIRAQEDFV-SKLSGHKSEVCGLKWSY-DNRELASGGNDNRLFVWNQHSTQ 324 (415)
Q Consensus 253 V~~l~~~--~~~l~sgs----~dg~I~iwd~~~~~~~~-~~~~~h~~~V~~l~~sp-dg~~lasg~~dg~I~iwd~~~~~ 324 (415)
..+++-+ .+++++|. .|-.+.+||+|...+.+ .....|...|++++|+| +.++|++|+.||.|.|||++...
T Consensus 120 f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~ 199 (376)
T KOG1188|consen 120 FICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDN 199 (376)
T ss_pred ceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCc
Confidence 7777775 56777775 35679999999988644 44568999999999999 67899999999999999997542
Q ss_pred ---eeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCC
Q 014934 325 ---PVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTN 368 (415)
Q Consensus 325 ---~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~ 368 (415)
.+...-.|...|..+.|...+-.-+.+-. ......+|+++.+
T Consensus 200 EeDaL~~viN~~sSI~~igw~~~~ykrI~clT--H~Etf~~~ele~~ 244 (376)
T KOG1188|consen 200 EEDALLHVINHGSSIHLIGWLSKKYKRIMCLT--HMETFAIYELEDG 244 (376)
T ss_pred chhhHHHhhcccceeeeeeeecCCcceEEEEE--ccCceeEEEccCC
Confidence 22233367777888888877622233332 5778888887654
No 157
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.77 E-value=4.8e-16 Score=142.64 Aligned_cols=229 Identities=15% Similarity=0.240 Sum_probs=178.1
Q ss_pred eeEeecCC-CcEEEEEcCCeEEEEECCCCCeEEeEec-CCCCCeEEEEEcCCCCeEEEEECCC--cEEEEECCCCeeeEE
Q 014934 170 LNLVDWSS-HNVLAVGLGNCVYLWNACSSKVTKLCDL-GIDDSVCSVGWANRNTHLAVGTSHG--KVQIWDASRCKRVRT 245 (415)
Q Consensus 170 i~~l~ws~-~~~la~~~d~~V~iwd~~~~~~~~~~~~-~~~~~V~~v~~sp~g~~la~g~~dg--~V~iwd~~~~~~~~~ 245 (415)
++.+.|+. ..+|++|....-++|+...-.. .... .....|..+-|+ ..++|..+.+. .+++++.+....+..
T Consensus 8 i~~~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k--~~~~~~~~~~IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~~~ICe 83 (391)
T KOG2110|consen 8 INFIGFNQDSTLLSVGSKDGYKIFSCSPFEK--CFSKDTEGVSIVEMLFS--SSLVAIVSIKQPRKLKVVHFKKKTTICE 83 (391)
T ss_pred eeeeeeccceeEEEccCCCceeEEecCchHH--hhcccCCCeEEEEeecc--cceeEEEecCCCceEEEEEcccCceEEE
Confidence 55666887 6789999888888888765433 1111 112234444444 45666665543 489999988777766
Q ss_pred ecCCCccEEEEEeeCCEEEEEeCCCcEEEEECCCCCccEEEec---cccCCeEEEEEeCCCCEEEEE--eCCCcEEEEEC
Q 014934 246 MEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLS---GHKSEVCGLKWSYDNRELASG--GNDNRLFVWNQ 320 (415)
Q Consensus 246 l~~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~---~h~~~V~~l~~spdg~~lasg--~~dg~I~iwd~ 320 (415)
+. ....|.++.++.+.|+++-.+. |+|||++... .++++. .+...++++++++.+.+||-- ...|.|.|||+
T Consensus 84 ~~-fpt~IL~VrmNr~RLvV~Lee~-IyIydI~~Mk-lLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~ 160 (391)
T KOG2110|consen 84 IF-FPTSILAVRMNRKRLVVCLEES-IYIYDIKDMK-LLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDT 160 (391)
T ss_pred Ee-cCCceEEEEEccceEEEEEccc-EEEEecccce-eehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEc
Confidence 65 5677999999988888876665 9999999987 455544 466678888888888899873 34689999999
Q ss_pred CCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCe-EEEEECCCCcEEEEeeCC---CCEEEEEECCCCCeEEEEE
Q 014934 321 HSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRC-IRFWNTTTNTHLSCMDTG---SQVCNLVWSKNVNELVSTH 396 (415)
Q Consensus 321 ~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~-I~iwd~~t~~~~~~~~~~---~~V~~l~~s~~~~~l~s~~ 396 (415)
.+-+++..+..|.+.+.+++|+++|. +||+++ +.|+ |||+.+.+|+.+.++.-+ ..|++++|++++++|++
T Consensus 161 ~nl~~v~~I~aH~~~lAalafs~~G~-llATAS--eKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~-- 235 (391)
T KOG2110|consen 161 INLQPVNTINAHKGPLAALAFSPDGT-LLATAS--EKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAA-- 235 (391)
T ss_pred ccceeeeEEEecCCceeEEEECCCCC-EEEEec--cCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEE--
Confidence 99999999999999999999999997 999987 5554 899999999999999755 46889999999999988
Q ss_pred ecCCCcEEEEECCC
Q 014934 397 GYSQNQIIVWRYPT 410 (415)
Q Consensus 397 g~~dg~I~vw~~~s 410 (415)
.++.++|+||++..
T Consensus 236 sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 236 SSNTETVHIFKLEK 249 (391)
T ss_pred ecCCCeEEEEEecc
Confidence 45778999999865
No 158
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.77 E-value=4.8e-17 Score=150.63 Aligned_cols=237 Identities=24% Similarity=0.339 Sum_probs=173.5
Q ss_pred ceeEeecCC--CcEEEEE-cCCeEEEEECCCCC-------eEEeEec-CCCCCeEEEEEcCCCCeEEEEECCCcEEEEEC
Q 014934 169 YLNLVDWSS--HNVLAVG-LGNCVYLWNACSSK-------VTKLCDL-GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDA 237 (415)
Q Consensus 169 ~i~~l~ws~--~~~la~~-~d~~V~iwd~~~~~-------~~~~~~~-~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~ 237 (415)
.+..+++.. .+.||+| .|..|+||.+..+. +..+-.+ .|...|++|.|+|+|..||+|+.+|.|.+|-.
T Consensus 15 pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~ 94 (434)
T KOG1009|consen 15 PVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQ 94 (434)
T ss_pred ceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEe
Confidence 456677766 3366666 68899999875432 1111122 78899999999999999999999999999976
Q ss_pred C--------C--------CeeeEEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEE
Q 014934 238 S--------R--------CKRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKW 299 (415)
Q Consensus 238 ~--------~--------~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~ 299 (415)
. + ......+.+|...|..++|. +.++++|+.|..+++||+..+. ....+..|...|..++|
T Consensus 95 ~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~-l~~~~~dh~~yvqgvaw 173 (434)
T KOG1009|consen 95 GDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQ-LLAILDDHEHYVQGVAW 173 (434)
T ss_pred cCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccce-eEeeccccccccceeec
Confidence 5 2 23456677899999999998 5799999999999999999987 67888899999999999
Q ss_pred eCCCCEEEEEeCCCcEEEEECCCCce------------------------------------------------------
Q 014934 300 SYDNRELASGGNDNRLFVWNQHSTQP------------------------------------------------------ 325 (415)
Q Consensus 300 spdg~~lasg~~dg~I~iwd~~~~~~------------------------------------------------------ 325 (415)
.|-++++++-+.|...+++.+...+.
T Consensus 174 Dpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~ 253 (434)
T KOG1009|consen 174 DPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFK 253 (434)
T ss_pred chhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceee
Confidence 99988888888877666665533211
Q ss_pred ---------------------eEEeccCCCcEEEEEEcCCC-----------------CcEEEEEcCCCCCeEEEEECCC
Q 014934 326 ---------------------VLKYCEHTAAVKAIAWSPHL-----------------HGLLASGGGTADRCIRFWNTTT 367 (415)
Q Consensus 326 ---------------------~~~~~~h~~~V~~l~~sp~~-----------------~~llasggg~~d~~I~iwd~~t 367 (415)
...+.....++.++.|+|-- +.++|.+ ....+.|||.++
T Consensus 254 ~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiA---t~~svyvydtq~ 330 (434)
T KOG1009|consen 254 VGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIA---TKNSVYVYDTQT 330 (434)
T ss_pred eCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEe---ecceEEEecccc
Confidence 11111122233444444310 1123333 356789999998
Q ss_pred CcEEEEee--CCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCC
Q 014934 368 NTHLSCMD--TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTM 411 (415)
Q Consensus 368 ~~~~~~~~--~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~ 411 (415)
-.++..+. |-+.++.++|+.+|..|+. .+.||-..+--++..
T Consensus 331 ~~P~~~v~nihy~~iTDiaws~dg~~l~v--SS~DGyCS~vtfe~~ 374 (434)
T KOG1009|consen 331 LEPLAVVDNIHYSAITDIAWSDDGSVLLV--SSTDGFCSLVTFEPW 374 (434)
T ss_pred ccceEEEeeeeeeeecceeecCCCcEEEE--eccCCceEEEEEcch
Confidence 88887776 5688999999999999999 567887776665543
No 159
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.77 E-value=1.1e-16 Score=156.75 Aligned_cols=246 Identities=19% Similarity=0.342 Sum_probs=190.9
Q ss_pred CCCCCCCcceeEeecCC-C-cEEEEEcCCeEEEEECCCC--CeEEeEec---C-CCCCeEEEEEcCCCCeEEEEECCCcE
Q 014934 161 APALQDDFYLNLVDWSS-H-NVLAVGLGNCVYLWNACSS--KVTKLCDL---G-IDDSVCSVGWANRNTHLAVGTSHGKV 232 (415)
Q Consensus 161 ~~~l~~~~~i~~l~ws~-~-~~la~~~d~~V~iwd~~~~--~~~~~~~~---~-~~~~V~~v~~sp~g~~la~g~~dg~V 232 (415)
+-.+..+-.|+++.|+| + .+|+++.|+++.+|...+. -......+ + ......+.-|+|+++.+++-+..|..
T Consensus 261 all~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~ 340 (764)
T KOG1063|consen 261 ALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGF 340 (764)
T ss_pred hhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcE
Confidence 33345666899999999 4 6888889999999987654 33333333 2 24568899999999999999999999
Q ss_pred EEEECCCC---eeeEEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCC--------------------------
Q 014934 233 QIWDASRC---KRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQE-------------------------- 281 (415)
Q Consensus 233 ~iwd~~~~---~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~-------------------------- 281 (415)
++|-.+.. .....+.||...|.+++|+ +++|++.+.|.+-+++---..+
T Consensus 341 hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~ 420 (764)
T KOG1063|consen 341 HLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDL 420 (764)
T ss_pred EEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCc
Confidence 99984332 3444567999999999999 6899999888776554211000
Q ss_pred --------------------------------------------------------------------------------
Q 014934 282 -------------------------------------------------------------------------------- 281 (415)
Q Consensus 282 -------------------------------------------------------------------------------- 281 (415)
T Consensus 421 ~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L 500 (764)
T KOG1063|consen 421 QFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCEL 500 (764)
T ss_pred eeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhc
Confidence
Q ss_pred ---------------ccEEEeccccCCeEEEEEeCCCCEEEEEeCCC-----cEEEEECCCCceeEEeccCCCcEEEEEE
Q 014934 282 ---------------DFVSKLSGHKSEVCGLKWSYDNRELASGGNDN-----RLFVWNQHSTQPVLKYCEHTAAVKAIAW 341 (415)
Q Consensus 282 ---------------~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg-----~I~iwd~~~~~~~~~~~~h~~~V~~l~~ 341 (415)
..++++.||..+|.+++.+|+|+++|+++... .|++|+..+...++.+.+|.-.|+.++|
T Consensus 501 ~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~F 580 (764)
T KOG1063|consen 501 TEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAF 580 (764)
T ss_pred cCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEE
Confidence 01122568999999999999999999988654 5999999999888899999999999999
Q ss_pred cCCCCcEEEEEcCCCCCeEEEEECCCCcE----EEEee-CCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCC
Q 014934 342 SPHLHGLLASGGGTADRCIRFWNTTTNTH----LSCMD-TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTM 411 (415)
Q Consensus 342 sp~~~~llasggg~~d~~I~iwd~~t~~~----~~~~~-~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~ 411 (415)
+|++++||+.+ .|+++.+|....... ....+ |..-|..+.|+|++.++++ ++.|.+|+||..+..
T Consensus 581 Spdg~~LLsvs---RDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaT--aSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 581 SPDGRYLLSVS---RDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFAT--ASRDKKVKVWEEPDL 650 (764)
T ss_pred CCCCcEEEEee---cCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEE--ecCCceEEEEeccCc
Confidence 99999776665 799999999854321 11122 5556899999999999998 788999999999876
No 160
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.77 E-value=2.1e-15 Score=146.60 Aligned_cols=239 Identities=30% Similarity=0.475 Sum_probs=189.2
Q ss_pred CcceeEeecCC-CcEEEEE-cCCeEEEEECCCCC-eEEeEecCCCCCeEEEEE-cCCCC-eEEEEEC-CCcEEEEECCC-
Q 014934 167 DFYLNLVDWSS-HNVLAVG-LGNCVYLWNACSSK-VTKLCDLGIDDSVCSVGW-ANRNT-HLAVGTS-HGKVQIWDASR- 239 (415)
Q Consensus 167 ~~~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~-~~~~~~~~~~~~V~~v~~-sp~g~-~la~g~~-dg~V~iwd~~~- 239 (415)
...+..+.+.+ +..++.+ .++.+.+|+...+. ....+...+...+..+.+ .+++. .++..+. |+.+.+||...
T Consensus 65 ~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 144 (466)
T COG2319 65 EDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTP 144 (466)
T ss_pred cceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCC
Confidence 34577888887 5555555 58999999998886 444443223246777777 88887 5555444 99999999998
Q ss_pred CeeeEEecCCCccEEEEEeeC--CEEEEEeC-CCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCC-EEEEEeCCCcE
Q 014934 240 CKRVRTMEGHRLRVGALAWSS--SLLSSGSR-DKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNR-ELASGGNDNRL 315 (415)
Q Consensus 240 ~~~~~~l~~h~~~V~~l~~~~--~~l~sgs~-dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~-~lasg~~dg~I 315 (415)
......+..|...|..++|.+ ..+++++. |+.+++|++.... .+..+.+|...|.+++|+|++. .+++++.|+.|
T Consensus 145 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i 223 (466)
T COG2319 145 GKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGK-PLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTI 223 (466)
T ss_pred CeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCc-eEEeeccCCCceEEEEEcCCcceEEEEecCCCcE
Confidence 788888999999999999984 56788875 9999999999854 5777888999999999999998 55556999999
Q ss_pred EEEECCCCceeE-EeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcE-EEEe-eCCCCEEEEEECCCCCeE
Q 014934 316 FVWNQHSTQPVL-KYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTH-LSCM-DTGSQVCNLVWSKNVNEL 392 (415)
Q Consensus 316 ~iwd~~~~~~~~-~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~-~~~~-~~~~~V~~l~~s~~~~~l 392 (415)
.+||...+..+. .+..|...+ ...|+|++. ++++++ .|+.+++|++..... +..+ .+...|.++.|.|++..+
T Consensus 224 ~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~--~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 299 (466)
T COG2319 224 RLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGS-LLASGS--SDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLL 299 (466)
T ss_pred EEEECCCCcEEeeecCCCCcce-eEeECCCCC-EEEEec--CCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEE
Confidence 999998887777 688888876 448999984 666665 899999999987664 4444 456889999999998888
Q ss_pred EEEEecCCCcEEEEECCCCc
Q 014934 393 VSTHGYSQNQIIVWRYPTMS 412 (415)
Q Consensus 393 ~s~~g~~dg~I~vw~~~s~~ 412 (415)
++ ++.|+.+.+|+..+..
T Consensus 300 ~~--~~~d~~~~~~~~~~~~ 317 (466)
T COG2319 300 AS--GSSDGTVRLWDLETGK 317 (466)
T ss_pred EE--eeCCCcEEEEEcCCCc
Confidence 88 5566889999887654
No 161
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=5.6e-17 Score=145.74 Aligned_cols=191 Identities=17% Similarity=0.234 Sum_probs=150.6
Q ss_pred eEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEec
Q 014934 211 VCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLS 288 (415)
Q Consensus 211 V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~ 288 (415)
..|+.|++.|.+||+|+.||.|.|||+.+...-+.+.+|..+|++++|+ ++.|+++|+|..|.+||+..+. +++.+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs-~l~rir 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGS-PLKRIR 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCC-ceeEEE
Confidence 7899999999999999999999999999999889999999999999999 7899999999999999999998 555554
Q ss_pred cccCCeEEEEEeCCCCE-EEEEeCCCcEEEEECCCCceeEEecc--C----CCcEEEEEEcCCCCcEEEEEcCCCCCeEE
Q 014934 289 GHKSEVCGLKWSYDNRE-LASGGNDNRLFVWNQHSTQPVLKYCE--H----TAAVKAIAWSPHLHGLLASGGGTADRCIR 361 (415)
Q Consensus 289 ~h~~~V~~l~~spdg~~-lasg~~dg~I~iwd~~~~~~~~~~~~--h----~~~V~~l~~sp~~~~llasggg~~d~~I~ 361 (415)
...+|....|+|..+. +++.--+..-.+-++..+ .+++-. . .....+..|.+.|+++++ |+..|.+.
T Consensus 105 -f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~--~h~~Lp~d~d~dln~sas~~~fdr~g~yIit---GtsKGkll 178 (405)
T KOG1273|consen 105 -FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDP--KHSVLPKDDDGDLNSSASHGVFDRRGKYIIT---GTSKGKLL 178 (405)
T ss_pred -ccCccceeeeccccCCeEEEEEecCCcEEEEecCC--ceeeccCCCccccccccccccccCCCCEEEE---ecCcceEE
Confidence 5689999999994433 333323333444455442 222211 1 111123368888986665 44799999
Q ss_pred EEECCCCcEEEEeeC--CCCEEEEEECCCCCeEEEEEecCCCcEEEEECCC
Q 014934 362 FWNTTTNTHLSCMDT--GSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPT 410 (415)
Q Consensus 362 iwd~~t~~~~~~~~~--~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s 410 (415)
++|..+-+++..+.. -..|..+.++..|+.|+. ..+|..|+.|+...
T Consensus 179 v~~a~t~e~vas~rits~~~IK~I~~s~~g~~lii--NtsDRvIR~ye~~d 227 (405)
T KOG1273|consen 179 VYDAETLECVASFRITSVQAIKQIIVSRKGRFLII--NTSDRVIRTYEISD 227 (405)
T ss_pred EEecchheeeeeeeechheeeeEEEEeccCcEEEE--ecCCceEEEEehhh
Confidence 999999999988763 367999999999999999 78899999999874
No 162
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=2.1e-18 Score=177.41 Aligned_cols=199 Identities=22% Similarity=0.395 Sum_probs=167.5
Q ss_pred ceeEeecCC--CcEEEEEc-CCeEEEEECCCCCeEEeE-ecCCCCCeEEEEEcCC-CCeEEEEECCCcEEEEECCCCeee
Q 014934 169 YLNLVDWSS--HNVLAVGL-GNCVYLWNACSSKVTKLC-DLGIDDSVCSVGWANR-NTHLAVGTSHGKVQIWDASRCKRV 243 (415)
Q Consensus 169 ~i~~l~ws~--~~~la~~~-d~~V~iwd~~~~~~~~~~-~~~~~~~V~~v~~sp~-g~~la~g~~dg~V~iwd~~~~~~~ 243 (415)
.|..++|++ +++||.|. +|.|.|||+..-+.-... .....+.|.+++|+.. ...||+|+.+|.+.|||++..+.+
T Consensus 118 ~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pi 197 (1049)
T KOG0307|consen 118 PVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPI 197 (1049)
T ss_pred ceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcc
Confidence 477899999 67999994 689999999875433222 2234678999999974 468899999999999999998888
Q ss_pred EEecCCCc--cEEEEEeeC---CEEEEEeCCC---cEEEEECCCCCccEEEeccccCCeEEEEEeCCC-CEEEEEeCCCc
Q 014934 244 RTMEGHRL--RVGALAWSS---SLLSSGSRDK---SILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDN-RELASGGNDNR 314 (415)
Q Consensus 244 ~~l~~h~~--~V~~l~~~~---~~l~sgs~dg---~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg-~~lasg~~dg~ 314 (415)
..+..|.+ .+..++|++ ..|++++.|. .|.+||+|....+++.+.+|...|.++.|++.+ .+|++++.|++
T Consensus 198 i~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ 277 (1049)
T KOG0307|consen 198 IKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNR 277 (1049)
T ss_pred cccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCC
Confidence 88876655 478899996 3566665553 599999999888889999999999999999955 88999999999
Q ss_pred EEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCc
Q 014934 315 LFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNT 369 (415)
Q Consensus 315 I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~ 369 (415)
|.+|+.++++.+..+......+..+.|+|....++++.+ .||.|.|+.+..+.
T Consensus 278 ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~as--fdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 278 IICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAAS--FDGKISIYSLQGTD 330 (1049)
T ss_pred eeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhhe--eccceeeeeeecCC
Confidence 999999999999999888889999999999998999887 99999999997654
No 163
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.76 E-value=1.2e-17 Score=161.94 Aligned_cols=229 Identities=21% Similarity=0.343 Sum_probs=170.5
Q ss_pred cEEEEE---cCCeEEEEECCCC-CeEE-eE-ecCCCCCeEEEEEcC-CCCeEEEEECCCcEEEEECCCC-------eeeE
Q 014934 179 NVLAVG---LGNCVYLWNACSS-KVTK-LC-DLGIDDSVCSVGWAN-RNTHLAVGTSHGKVQIWDASRC-------KRVR 244 (415)
Q Consensus 179 ~~la~~---~d~~V~iwd~~~~-~~~~-~~-~~~~~~~V~~v~~sp-~g~~la~g~~dg~V~iwd~~~~-------~~~~ 244 (415)
..+|+- .+|.|-||++... ++.. .+ .+-....|+.+.|.| |...||+++.||.|+||.+..+ ....
T Consensus 592 ~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~ 671 (1012)
T KOG1445|consen 592 KRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEK 671 (1012)
T ss_pred ceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcce
Confidence 445553 4689999998652 2211 00 112357899999999 7789999999999999998654 3445
Q ss_pred EecCCCccEEEEEeeC---CEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECC
Q 014934 245 TMEGHRLRVGALAWSS---SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQH 321 (415)
Q Consensus 245 ~l~~h~~~V~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~ 321 (415)
.+..|...|+.+.|++ +.|++++.|-+|.+||+++.. ....+.+|...|.+++|||||+.+|+.+.||+|+||+.+
T Consensus 672 ~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~-~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Pr 750 (1012)
T KOG1445|consen 672 ILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAK-LYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPR 750 (1012)
T ss_pred eeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhh-hhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCC
Confidence 6788999999999995 899999999999999999987 467889999999999999999999999999999999988
Q ss_pred CC-ceeEEeccCC-CcEEEEEEcCCCCcEEEEEcC-CCCCeEEEEECCCC--cEEEE--eeCCCCEEEEEECCCCCeEEE
Q 014934 322 ST-QPVLKYCEHT-AAVKAIAWSPHLHGLLASGGG-TADRCIRFWNTTTN--THLSC--MDTGSQVCNLVWSKNVNELVS 394 (415)
Q Consensus 322 ~~-~~~~~~~~h~-~~V~~l~~sp~~~~llasggg-~~d~~I~iwd~~t~--~~~~~--~~~~~~V~~l~~s~~~~~l~s 394 (415)
++ ++++.-.+.. ..-..|.|.-+|+.++++|-. ...+.|.+||..+- ..+.. ++..-++.--.+.+|...|+.
T Consensus 751 s~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfl 830 (1012)
T KOG1445|consen 751 SREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFL 830 (1012)
T ss_pred CCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEE
Confidence 76 3444433221 233467888899977777621 12466889988753 33333 333333444456777777766
Q ss_pred EEecCCCcEEEEECC
Q 014934 395 THGYSQNQIIVWRYP 409 (415)
Q Consensus 395 ~~g~~dg~I~vw~~~ 409 (415)
+ |-.|..|.+|.+-
T Consensus 831 t-GKGD~~v~~yEv~ 844 (1012)
T KOG1445|consen 831 T-GKGDRFVNMYEVI 844 (1012)
T ss_pred e-cCCCceEEEEEec
Confidence 5 7778899988863
No 164
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.76 E-value=6e-17 Score=157.36 Aligned_cols=238 Identities=19% Similarity=0.313 Sum_probs=166.9
Q ss_pred ceeEeecCCC--cEEEEEcCCeEEEEECCCCCeEEe-EecCCCCCeEEEEEcCCC-CeEEEEECCCcEEEEECCCCe---
Q 014934 169 YLNLVDWSSH--NVLAVGLGNCVYLWNACSSKVTKL-CDLGIDDSVCSVGWANRN-THLAVGTSHGKVQIWDASRCK--- 241 (415)
Q Consensus 169 ~i~~l~ws~~--~~la~~~d~~V~iwd~~~~~~~~~-~~~~~~~~V~~v~~sp~g-~~la~g~~dg~V~iwd~~~~~--- 241 (415)
.|--+.|-|+ .+|.++.|.++++||+.++++... ..++|...|.+++|.+.. ..|++|+.||.|.|||+.-..
T Consensus 102 AifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~ 181 (720)
T KOG0321|consen 102 AIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDA 181 (720)
T ss_pred eeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhh
Confidence 4666788883 344445788999999999988766 224999999999999955 689999999999999985321
Q ss_pred ------------------------eeEEecCCC----ccEEEEEee-CCEEEEEeC-CCcEEEEECCCCCcc-------E
Q 014934 242 ------------------------RVRTMEGHR----LRVGALAWS-SSLLSSGSR-DKSILQRDIRAQEDF-------V 284 (415)
Q Consensus 242 ------------------------~~~~l~~h~----~~V~~l~~~-~~~l~sgs~-dg~I~iwd~~~~~~~-------~ 284 (415)
.++.-..+. +.|+.+.|- ...|++++. |+.|++||++..... .
T Consensus 182 ~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~ 261 (720)
T KOG0321|consen 182 LEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGS 261 (720)
T ss_pred HHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcc
Confidence 001111222 235566665 578888877 999999999975421 1
Q ss_pred EEeccc---cCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCC--ceeEEeccCCCc--EEEEEEcCCCCcEEEEEcCCCC
Q 014934 285 SKLSGH---KSEVCGLKWSYDNRELASGGNDNRLFVWNQHST--QPVLKYCEHTAA--VKAIAWSPHLHGLLASGGGTAD 357 (415)
Q Consensus 285 ~~~~~h---~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~--~~~~~~~~h~~~--V~~l~~sp~~~~llasggg~~d 357 (415)
..+..| ...+.+|.....|.+|.+.+.|+.|+.||+.+- .++..+.++... -..-..+|++. .+++|+ .|
T Consensus 262 ~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~-~l~SgS--sd 338 (720)
T KOG0321|consen 262 DKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDC-SLLSGS--SD 338 (720)
T ss_pred cCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCc-eEeccC--CC
Confidence 122233 345778888888898888888999999999764 455555554322 12235688887 555554 89
Q ss_pred CeEEEEECCCCcEEEE--eeCCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCC
Q 014934 358 RCIRFWNTTTNTHLSC--MDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPT 410 (415)
Q Consensus 358 ~~I~iwd~~t~~~~~~--~~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s 410 (415)
...++|.+.+.+.--. ..|.-.|+.++|.|....=+++ .++|..++||++..
T Consensus 339 ~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~T-cSdD~~~kiW~l~~ 392 (720)
T KOG0321|consen 339 EQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVAT-CSDDFRVKIWRLSN 392 (720)
T ss_pred cceeeeeecCccCChhhhhCcceEEEEEeeccccCCCcee-eccCcceEEEeccC
Confidence 9999999987654322 2356679999998865433333 37899999999854
No 165
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.76 E-value=1.8e-16 Score=142.93 Aligned_cols=236 Identities=21% Similarity=0.345 Sum_probs=176.5
Q ss_pred eeEeecCC-C-cEEEEEcCCeEEEEECCCC------------CeEEeEecCCCCCeEEEEEc-------CCCCeEEEEEC
Q 014934 170 LNLVDWSS-H-NVLAVGLGNCVYLWNACSS------------KVTKLCDLGIDDSVCSVGWA-------NRNTHLAVGTS 228 (415)
Q Consensus 170 i~~l~ws~-~-~~la~~~d~~V~iwd~~~~------------~~~~~~~~~~~~~V~~v~~s-------p~g~~la~g~~ 228 (415)
+....|+| + -+|+-..|+.+.+|++-.. +....+.......|...+|- |+..++|+.+.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 44667999 4 4566667899999987421 01112222345678888885 56789999999
Q ss_pred CCcEEEEECCCCeeeEEecC--CCcc---EEEEEee--CCEEEEEeCCCcEEEEEC-CCCCcc-EEE-----eccccCCe
Q 014934 229 HGKVQIWDASRCKRVRTMEG--HRLR---VGALAWS--SSLLSSGSRDKSILQRDI-RAQEDF-VSK-----LSGHKSEV 294 (415)
Q Consensus 229 dg~V~iwd~~~~~~~~~l~~--h~~~---V~~l~~~--~~~l~sgs~dg~I~iwd~-~~~~~~-~~~-----~~~h~~~V 294 (415)
+.-|++||.-+++....+.+ |... ..+++|+ +..|++| ..+.|+++|+ |.+..+ +.. ..+..+-|
T Consensus 132 ~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~gii 210 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGII 210 (406)
T ss_pred cCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhccccccccee
Confidence 99999999999988777763 4433 4578888 4677665 6778999999 444321 111 22346678
Q ss_pred EEEEEeC-CCCEEEEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCC-cEEE
Q 014934 295 CGLKWSY-DNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTN-THLS 372 (415)
Q Consensus 295 ~~l~~sp-dg~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~-~~~~ 372 (415)
.+++|+| +.+.+|.|+....+-||.-..+.+++.+-+|.+.|+.+.|+++|+.|+. |. ..|..|..||++.- .++.
T Consensus 211 sc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfs-Ga-Rk~dkIl~WDiR~~~~pv~ 288 (406)
T KOG2919|consen 211 SCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFS-GA-RKDDKILCWDIRYSRDPVY 288 (406)
T ss_pred eeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecc-cc-cCCCeEEEEeehhccchhh
Confidence 9999999 5558999999999999999999999999999999999999999995555 43 37889999999863 4444
Q ss_pred Eee----CCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCC
Q 014934 373 CMD----TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPT 410 (415)
Q Consensus 373 ~~~----~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s 410 (415)
.+. ...+-.-....|+++.|++ |+.||.|++||...
T Consensus 289 ~L~rhv~~TNQRI~FDld~~~~~Las--G~tdG~V~vwdlk~ 328 (406)
T KOG2919|consen 289 ALERHVGDTNQRILFDLDPKGEILAS--GDTDGSVRVWDLKD 328 (406)
T ss_pred hhhhhccCccceEEEecCCCCceeec--cCCCccEEEEecCC
Confidence 443 1234444677899999999 88999999999987
No 166
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.75 E-value=4.5e-15 Score=144.26 Aligned_cols=240 Identities=29% Similarity=0.474 Sum_probs=187.2
Q ss_pred cceeEeecCC-CcEEEEEc--CCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCC-eEEEEECCCcEEEEECCCCeee
Q 014934 168 FYLNLVDWSS-HNVLAVGL--GNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNT-HLAVGTSHGKVQIWDASRCKRV 243 (415)
Q Consensus 168 ~~i~~l~ws~-~~~la~~~--d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~-~la~g~~dg~V~iwd~~~~~~~ 243 (415)
..+..++|++ +..++.+. ++.+++|+...+....... +|...|.+++|+|++. .+++++.|+.|++||...+..+
T Consensus 156 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~ 234 (466)
T COG2319 156 ESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLA-GHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLL 234 (466)
T ss_pred ccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeec-cCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEE
Confidence 3577899999 55666664 8999999999877777765 6889999999999998 5555589999999999888877
Q ss_pred E-EecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEEC
Q 014934 244 R-TMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQ 320 (415)
Q Consensus 244 ~-~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~ 320 (415)
. .+.+|...+ ...|. +..+++++.|+.+++||++........+.+|...|.++.|+|++..+++++.|+.+.+||.
T Consensus 235 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~ 313 (466)
T COG2319 235 RSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDL 313 (466)
T ss_pred eeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEc
Confidence 7 688888774 33565 4688899999999999999776434444678899999999999999999999999999999
Q ss_pred CCCceeEEec--cCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEEEEec
Q 014934 321 HSTQPVLKYC--EHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGY 398 (415)
Q Consensus 321 ~~~~~~~~~~--~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~ 398 (415)
.+........ .|...+..+.|.+++..++..+. .|+.+.+|++..............+..+.+.+ . ....+.+.
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~ 389 (466)
T COG2319 314 ETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGS--DDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSP-D-GRVVSSGS 389 (466)
T ss_pred CCCceEEEeeecccCCceEEEEECCCCCEEEEeec--CCCcEEeeecCCCceeEEecCCceEEEEEECC-C-CCEEEEec
Confidence 8887766665 78888999999433233444433 67999999999887444444444488999999 6 55443357
Q ss_pred CCCcEEEEECCCCcc
Q 014934 399 SQNQIIVWRYPTMSK 413 (415)
Q Consensus 399 ~dg~I~vw~~~s~~~ 413 (415)
.++.+.+|+......
T Consensus 390 ~~~~~~~~~~~~~~~ 404 (466)
T COG2319 390 TDGTVRLWDLSTGSL 404 (466)
T ss_pred CCCceEEEecccCee
Confidence 889999999987543
No 167
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.75 E-value=4.9e-17 Score=150.03 Aligned_cols=164 Identities=23% Similarity=0.410 Sum_probs=139.8
Q ss_pred EEecCCCccEEEEEeeC---CEEEEEeCCCcEEEEECCCCC------ccEEEeccccCCeEEEEEeCC-CCEEEEEeCCC
Q 014934 244 RTMEGHRLRVGALAWSS---SLLSSGSRDKSILQRDIRAQE------DFVSKLSGHKSEVCGLKWSYD-NRELASGGNDN 313 (415)
Q Consensus 244 ~~l~~h~~~V~~l~~~~---~~l~sgs~dg~I~iwd~~~~~------~~~~~~~~h~~~V~~l~~spd-g~~lasg~~dg 313 (415)
-.+.+|.++|..++|+| +.|++||.|.+|.+|++..+. .++..+.+|...|--++|+|. .+.|++++.|+
T Consensus 75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn 154 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN 154 (472)
T ss_pred CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence 34569999999999984 789999999999999986543 457788999999999999994 56789999999
Q ss_pred cEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee--CCCCEEEEEECCCCCe
Q 014934 314 RLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD--TGSQVCNLVWSKNVNE 391 (415)
Q Consensus 314 ~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~--~~~~V~~l~~s~~~~~ 391 (415)
+|.|||+.+++.+.++. |..-|.++.|+-+|. +|++.. .|+.|||||.++++.+.+-. .+..-..+.|-.+|.
T Consensus 155 ~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs-~l~Ttc--kDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~- 229 (472)
T KOG0303|consen 155 TVSIWNVGTGEALITLD-HPDMVYSMSFNRDGS-LLCTTC--KDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK- 229 (472)
T ss_pred eEEEEeccCCceeeecC-CCCeEEEEEeccCCc-eeeeec--ccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc-
Confidence 99999999999999986 999999999999998 666655 89999999999999988763 355667788999998
Q ss_pred EEEEEec---CCCcEEEEECCCCcc
Q 014934 392 LVSTHGY---SQNQIIVWRYPTMSK 413 (415)
Q Consensus 392 l~s~~g~---~dg~I~vw~~~s~~~ 413 (415)
++++ |+ ++.++.+||-..+++
T Consensus 230 i~tT-Gfsr~seRq~aLwdp~nl~e 253 (472)
T KOG0303|consen 230 IFTT-GFSRMSERQIALWDPNNLEE 253 (472)
T ss_pred eeee-ccccccccceeccCcccccC
Confidence 4443 65 478999999887764
No 168
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=4.3e-16 Score=139.77 Aligned_cols=204 Identities=16% Similarity=0.302 Sum_probs=155.0
Q ss_pred eEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCC----CeeeEEecCCCccEEEEEee----CCEEEEEeCCCcEE
Q 014934 202 LCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASR----CKRVRTMEGHRLRVGALAWS----SSLLSSGSRDKSIL 273 (415)
Q Consensus 202 ~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~----~~~~~~l~~h~~~V~~l~~~----~~~l~sgs~dg~I~ 273 (415)
.+..+|.+-|.++.|.+-|+++|+|+.|++|.|||... ..+-...+.|.+.|..+.|- |+.+++++.|+++.
T Consensus 7 pi~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~ 86 (361)
T KOG2445|consen 7 PIDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVS 86 (361)
T ss_pred ccccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCcee
Confidence 34448889999999999999999999999999999643 35666778999999999997 68999999999999
Q ss_pred EEECCCCC--------ccEEEeccccCCeEEEEEeC--CCCEEEEEeCCCcEEEEECCCC------ceeEEec-------
Q 014934 274 QRDIRAQE--------DFVSKLSGHKSEVCGLKWSY--DNRELASGGNDNRLFVWNQHST------QPVLKYC------- 330 (415)
Q Consensus 274 iwd~~~~~--------~~~~~~~~h~~~V~~l~~sp--dg~~lasg~~dg~I~iwd~~~~------~~~~~~~------- 330 (415)
||.-.... ....++......|..++|.| -|-.||+++.||.|+||+.-.. ...+++.
T Consensus 87 iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~ 166 (361)
T KOG2445|consen 87 IWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPG 166 (361)
T ss_pred eeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcc
Confidence 99752111 12345566778899999998 5778999999999999997543 2223332
Q ss_pred cCCCcEEEEEEcCCC--CcEEEEEcCCCC-----CeEEEEECCCCc-EEEEe----eCCCCEEEEEECCCC----CeEEE
Q 014934 331 EHTAAVKAIAWSPHL--HGLLASGGGTAD-----RCIRFWNTTTNT-HLSCM----DTGSQVCNLVWSKNV----NELVS 394 (415)
Q Consensus 331 ~h~~~V~~l~~sp~~--~~llasggg~~d-----~~I~iwd~~t~~-~~~~~----~~~~~V~~l~~s~~~----~~l~s 394 (415)
.+.....|+.|+|.. ..+||.|+ .+ +.++||....+. ....+ ++..+|..++|.|+- ..|++
T Consensus 167 ~~~~~~~CvsWn~sr~~~p~iAvgs--~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAv 244 (361)
T KOG2445|consen 167 KNKQPCFCVSWNPSRMHEPLIAVGS--DEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAV 244 (361)
T ss_pred cccCcceEEeeccccccCceEEEEc--ccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEE
Confidence 356678899999753 34778775 22 378888765433 22222 378899999999972 34555
Q ss_pred EEecCCCcEEEEECCC
Q 014934 395 THGYSQNQIIVWRYPT 410 (415)
Q Consensus 395 ~~g~~dg~I~vw~~~s 410 (415)
+..|| |+||++..
T Consensus 245 --A~kDg-v~I~~v~~ 257 (361)
T KOG2445|consen 245 --ATKDG-VRIFKVKV 257 (361)
T ss_pred --eecCc-EEEEEEee
Confidence 67899 99999874
No 169
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=1.2e-16 Score=150.14 Aligned_cols=197 Identities=17% Similarity=0.276 Sum_probs=165.5
Q ss_pred CCCeEEEEEcCCCCeEEEEECCCcEEEEECC--CCeeeEEecCCCccEEEEEee--CC-EEEEEeCCCcEEEEECCCCCc
Q 014934 208 DDSVCSVGWANRNTHLAVGTSHGKVQIWDAS--RCKRVRTMEGHRLRVGALAWS--SS-LLSSGSRDKSILQRDIRAQED 282 (415)
Q Consensus 208 ~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~--~~~~~~~l~~h~~~V~~l~~~--~~-~l~sgs~dg~I~iwd~~~~~~ 282 (415)
.+.|++|.|+|....|++|+.||.++||.+. +...+..+.--..+|.+..|. +. .++++++-..++.||+.+.+.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 5789999999999999999999999999885 344666666566788888887 45 899999999999999987651
Q ss_pred -cEEEecccc-CCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeE
Q 014934 283 -FVSKLSGHK-SEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCI 360 (415)
Q Consensus 283 -~~~~~~~h~-~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I 360 (415)
.+..+.++. ..+.....+|++++||..|..|.|++....+++.+..+ .-.+.|..++|+.+++.|+++|+ +|.|
T Consensus 293 ~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~-KieG~v~~~~fsSdsk~l~~~~~---~GeV 368 (514)
T KOG2055|consen 293 TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSF-KIEGVVSDFTFSSDSKELLASGG---TGEV 368 (514)
T ss_pred ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhhee-eeccEEeeEEEecCCcEEEEEcC---CceE
Confidence 123334444 35777889999999999999999999999999998888 45788999999999998888885 8999
Q ss_pred EEEECCCCcEEEEeeCCCCE--EEEEECCCCCeEEEEEecCCCcEEEEECCC
Q 014934 361 RFWNTTTNTHLSCMDTGSQV--CNLVWSKNVNELVSTHGYSQNQIIVWRYPT 410 (415)
Q Consensus 361 ~iwd~~t~~~~~~~~~~~~V--~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s 410 (415)
.+||++...+++.+...+.| ++++.++++.+|++ |+..|.|-|||..+
T Consensus 369 ~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~--GS~~GiVNIYd~~s 418 (514)
T KOG2055|consen 369 YVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLAT--GSDSGIVNIYDGNS 418 (514)
T ss_pred EEEecCCcceEEEEeecCccceeeeeecCCCceEEe--ccCcceEEEeccch
Confidence 99999999999888755555 45777899999999 99999999999765
No 170
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.74 E-value=7.3e-17 Score=145.49 Aligned_cols=215 Identities=22% Similarity=0.390 Sum_probs=164.3
Q ss_pred CcEEEEE-cCCeEEEEECCCCCeEEeEec-CCCC---CeEEEEEcCCCCeEEEEECCCcEEEEEC-CCCeeeE---Ee--
Q 014934 178 HNVLAVG-LGNCVYLWNACSSKVTKLCDL-GIDD---SVCSVGWANRNTHLAVGTSHGKVQIWDA-SRCKRVR---TM-- 246 (415)
Q Consensus 178 ~~~la~~-~d~~V~iwd~~~~~~~~~~~~-~~~~---~V~~v~~sp~g~~la~g~~dg~V~iwd~-~~~~~~~---~l-- 246 (415)
.+++|++ .+.-|++||+-+|+....+.. .|-+ ...+++|+|||.+|++|. ...|+++|+ +.++.-. ++
T Consensus 123 t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~ 201 (406)
T KOG2919|consen 123 TNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTK 201 (406)
T ss_pred cceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhc
Confidence 4566666 578899999999998766643 3433 356899999999998765 568999999 4443221 11
Q ss_pred --cCCCccEEEEEeeC---CEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeC-CCcEEEEEC
Q 014934 247 --EGHRLRVGALAWSS---SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGN-DNRLFVWNQ 320 (415)
Q Consensus 247 --~~h~~~V~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~-dg~I~iwd~ 320 (415)
.+..+-+.+++|+| ..+++|+....+-||.-..+. ++..+.+|.+.|+.|+|.++|+.|.+|.. |..|..||+
T Consensus 202 ~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~-pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDi 280 (406)
T KOG2919|consen 202 GKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRR-PLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDI 280 (406)
T ss_pred ccccccceeeeeeccCCCCcceeeecccceeeeEecCCCC-ceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEee
Confidence 13367789999995 689999999988888877766 67888899999999999999999999874 778999999
Q ss_pred CC-CceeEEeccCCC-cEEEEEE--cCCCCcEEEEEcCCCCCeEEEEECCC-CcEEEEee-CCCCEEEEEECCCCCeEEE
Q 014934 321 HS-TQPVLKYCEHTA-AVKAIAW--SPHLHGLLASGGGTADRCIRFWNTTT-NTHLSCMD-TGSQVCNLVWSKNVNELVS 394 (415)
Q Consensus 321 ~~-~~~~~~~~~h~~-~V~~l~~--sp~~~~llasggg~~d~~I~iwd~~t-~~~~~~~~-~~~~V~~l~~s~~~~~l~s 394 (415)
+. ..++..+..|.. .-..|.| .|.++ +|++|+ .||.|++||+.+ |..+..+. +...|..++++|--..+++
T Consensus 281 R~~~~pv~~L~rhv~~TNQRI~FDld~~~~-~LasG~--tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilat 357 (406)
T KOG2919|consen 281 RYSRDPVYALERHVGDTNQRILFDLDPKGE-ILASGD--TDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILAT 357 (406)
T ss_pred hhccchhhhhhhhccCccceEEEecCCCCc-eeeccC--CCccEEEEecCCCCCcccccccccccccceecCcccceeee
Confidence 86 467777777765 3334444 57776 888887 899999999998 66444443 5667889999999777777
Q ss_pred EEe
Q 014934 395 THG 397 (415)
Q Consensus 395 ~~g 397 (415)
++|
T Consensus 358 ssG 360 (406)
T KOG2919|consen 358 SSG 360 (406)
T ss_pred ccC
Confidence 543
No 171
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.73 E-value=1.5e-16 Score=153.48 Aligned_cols=229 Identities=19% Similarity=0.315 Sum_probs=168.1
Q ss_pred ceeEeecCC-CcEEEEEc-CCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCC--eEEEEECCC--------------
Q 014934 169 YLNLVDWSS-HNVLAVGL-GNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNT--HLAVGTSHG-------------- 230 (415)
Q Consensus 169 ~i~~l~ws~-~~~la~~~-d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~--~la~g~~dg-------------- 230 (415)
.+.+|...+ +.+||.|+ ||+|+||.+.+|.+++.+.++ +.|.||+|+|.+. .||++....
T Consensus 402 ~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d--~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~ 479 (733)
T KOG0650|consen 402 LVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFD--SEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDRLEV 479 (733)
T ss_pred eEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeec--ceeEEEEecCCCCceeEEEEecCceEEeCccccchhhh
Confidence 478888888 88999985 689999999999998888653 6889999988664 444433222
Q ss_pred ------------------cEEEEECC--------------CCeeeEEe--------------------------------
Q 014934 231 ------------------KVQIWDAS--------------RCKRVRTM-------------------------------- 246 (415)
Q Consensus 231 ------------------~V~iwd~~--------------~~~~~~~l-------------------------------- 246 (415)
.|..|.-. ..+.+..+
T Consensus 480 ~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ 559 (733)
T KOG0650|consen 480 GPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQ 559 (733)
T ss_pred cchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEeccccccc
Confidence 12233211 00111111
Q ss_pred ---cCCCccEEEEEeeC--CEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECC
Q 014934 247 ---EGHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQH 321 (415)
Q Consensus 247 ---~~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~ 321 (415)
....+.|.++.|+| .+|++++. ..|++||+.... .+..+......|.+++.+|.|..|+.|+.|+.++.||+.
T Consensus 560 ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqe-lvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDld 637 (733)
T KOG0650|consen 560 SPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQE-LVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLD 637 (733)
T ss_pred CchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHH-HHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcc
Confidence 11235677888885 46666654 569999998755 566666677789999999999999999999999999987
Q ss_pred C-CceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECC------CCc---EEEEee-C----CCCEEEEEEC
Q 014934 322 S-TQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTT------TNT---HLSCMD-T----GSQVCNLVWS 386 (415)
Q Consensus 322 ~-~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~------t~~---~~~~~~-~----~~~V~~l~~s 386 (415)
- .++.+++..|..+|++++|++.-. |+++|+ .|+++.|+.-. ... ++..+. | .-.|..+.|+
T Consensus 638 lsskPyk~lr~H~~avr~Va~H~ryP-Lfas~s--dDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wH 714 (733)
T KOG0650|consen 638 LSSKPYKTLRLHEKAVRSVAFHKRYP-LFASGS--DDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWH 714 (733)
T ss_pred cCcchhHHhhhhhhhhhhhhhccccc-eeeeec--CCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeeccc
Confidence 4 478888889999999999999866 999987 88999988532 122 222332 2 2347888999
Q ss_pred CCCCeEEEEEecCCCcEEEE
Q 014934 387 KNVNELVSTHGYSQNQIIVW 406 (415)
Q Consensus 387 ~~~~~l~s~~g~~dg~I~vw 406 (415)
|...+|++ .+.||.|++|
T Consensus 715 P~qpWLfs--AGAd~tirlf 732 (733)
T KOG0650|consen 715 PRQPWLFS--AGADGTIRLF 732 (733)
T ss_pred CCCceEEe--cCCCceEEee
Confidence 99999999 5579999998
No 172
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=5.9e-16 Score=134.74 Aligned_cols=195 Identities=17% Similarity=0.274 Sum_probs=151.7
Q ss_pred CeEEEEEcCCCCeEEEEECCCcEEEEECCC---------C-eeeEEecCCCccEEEEEeeCCEEEEEeCCCcEEEEECCC
Q 014934 210 SVCSVGWANRNTHLAVGTSHGKVQIWDASR---------C-KRVRTMEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRA 279 (415)
Q Consensus 210 ~V~~v~~sp~g~~la~g~~dg~V~iwd~~~---------~-~~~~~l~~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~ 279 (415)
.|.+-+|+|.+++|++|..+|.|.+..+.. + ..+....+|.++|..++|...+|++|+. |.|+-|..+.
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~~Lls~gd-G~V~gw~W~E 90 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDDFLLSGGD-GLVYGWEWNE 90 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehhheeeccC-ceEEEeeehh
Confidence 466678999999999999999999998853 2 2445567999999999999988988875 9999998775
Q ss_pred CCccEE-------Eeccc-----cCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCc
Q 014934 280 QEDFVS-------KLSGH-----KSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHG 347 (415)
Q Consensus 280 ~~~~~~-------~~~~h-----~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ 347 (415)
..+... ...-| --+|+++...|..+-++.++.|+.++-||+++|+...++++|+..|.+++--....
T Consensus 91 ~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~- 169 (325)
T KOG0649|consen 91 EEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANG- 169 (325)
T ss_pred hhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCc-
Confidence 432110 01111 23689999999888888888999999999999999999999999999998844433
Q ss_pred EEEEEcCCCCCeEEEEECCCCcEEEEeeC-----------CCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCCcc
Q 014934 348 LLASGGGTADRCIRFWNTTTNTHLSCMDT-----------GSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSK 413 (415)
Q Consensus 348 llasggg~~d~~I~iwd~~t~~~~~~~~~-----------~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~~ 413 (415)
-+.+|+ +||++|+||++++++++.++. +..|- +..-+..+|++ |. ...+.+|.+++++.
T Consensus 170 qilsG~--EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wig--ala~~edWlvC--Gg-Gp~lslwhLrsse~ 239 (325)
T KOG0649|consen 170 QILSGA--EDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIG--ALAVNEDWLVC--GG-GPKLSLWHLRSSES 239 (325)
T ss_pred ceeecC--CCccEEEEeccccceeEEeccccChhhcCcccCceeE--EEeccCceEEe--cC-CCceeEEeccCCCc
Confidence 445555 999999999999999988852 12233 34456678888 43 35899999998864
No 173
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.72 E-value=9.9e-17 Score=154.08 Aligned_cols=202 Identities=20% Similarity=0.333 Sum_probs=165.8
Q ss_pred CCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCC--------CeeeEEecCCCccEEEEEee--CCEEEEEeCCCcEEEE
Q 014934 206 GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASR--------CKRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQR 275 (415)
Q Consensus 206 ~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~--------~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iw 275 (415)
.|.+.|+.+.|.+....|++|+.||.+.+|+++. .+++.++.+|.++|.|++.. ++.+++|+.||+|+.|
T Consensus 292 s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w 371 (577)
T KOG0642|consen 292 SHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCW 371 (577)
T ss_pred cchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeee
Confidence 5778999999999999999999999999999932 35778899999999999997 6899999999999999
Q ss_pred ECCCC---------CccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCce---------------------
Q 014934 276 DIRAQ---------EDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQP--------------------- 325 (415)
Q Consensus 276 d~~~~---------~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~--------------------- 325 (415)
++... ......+.||...|+.+++|+....|++++.||++++|+.....+
T Consensus 372 ~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~ 451 (577)
T KOG0642|consen 372 NLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSR 451 (577)
T ss_pred ccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccch
Confidence 66521 123456789999999999999999999999999999999754332
Q ss_pred -----------------------eEEecc-------CCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee
Q 014934 326 -----------------------VLKYCE-------HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD 375 (415)
Q Consensus 326 -----------------------~~~~~~-------h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~ 375 (415)
+..+.. -...+..+.++|.+. +..++. .|+.|+++|..+++.+....
T Consensus 452 ~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~-~~~~~h--ed~~Ir~~dn~~~~~l~s~~ 528 (577)
T KOG0642|consen 452 PAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTAD-ITFTAH--EDRSIRFFDNKTGKILHSMV 528 (577)
T ss_pred hHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCC-eeEecc--cCCceecccccccccchhee
Confidence 000000 012456778888886 666665 89999999999999887664
Q ss_pred -CCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCCc
Q 014934 376 -TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMS 412 (415)
Q Consensus 376 -~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~ 412 (415)
+...++++++.|+|-+|++ |..|+.+.+|+.....
T Consensus 529 a~~~svtslai~~ng~~l~s--~s~d~sv~l~kld~k~ 564 (577)
T KOG0642|consen 529 AHKDSVTSLAIDPNGPYLMS--GSHDGSVRLWKLDVKT 564 (577)
T ss_pred eccceecceeecCCCceEEe--ecCCceeehhhccchh
Confidence 7788999999999999999 8899999999986543
No 174
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.72 E-value=1.3e-15 Score=148.67 Aligned_cols=233 Identities=16% Similarity=0.282 Sum_probs=179.0
Q ss_pred ceeEeecCC-CcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCC-------
Q 014934 169 YLNLVDWSS-HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRC------- 240 (415)
Q Consensus 169 ~i~~l~ws~-~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~------- 240 (415)
+|+-++|-| +.-|..+.++.+++||...|.....+. +|.+.|.||+|+.||+++|+|+.|..|.+|..+-.
T Consensus 14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG~llqtLK-gHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH 92 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLK-GHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSH 92 (1081)
T ss_pred chheeEECCCCceEEEecCCEEEEEeCCCcccccccc-cccceEEEEEEccCCceeccCCCceeEEEecccccceeeecc
Confidence 688899999 777888889999999999999988887 99999999999999999999999999999985421
Q ss_pred -eeeEEec-----------------------------CCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCcc-EEEe
Q 014934 241 -KRVRTME-----------------------------GHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDF-VSKL 287 (415)
Q Consensus 241 -~~~~~l~-----------------------------~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~-~~~~ 287 (415)
..+..+. ....+|.+.+|. |.+|+.|-.||+|.+.+-...++. +...
T Consensus 93 ~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rp 172 (1081)
T KOG1538|consen 93 NDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERP 172 (1081)
T ss_pred CCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeCC
Confidence 1111111 123467777887 678999999999999865443321 2222
Q ss_pred ccccCCeEEEEEeCCC-----CEEEEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEE
Q 014934 288 SGHKSEVCGLKWSYDN-----RELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRF 362 (415)
Q Consensus 288 ~~h~~~V~~l~~spdg-----~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~i 362 (415)
.+...+|.+++|+|.. ..+++.....++..|.+. |+.+-+-..-.-...|+.+.++|.++|+-| .|+.+++
T Consensus 173 gg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~LiGG---sdk~L~~ 248 (1081)
T KOG1538|consen 173 GGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYILLGG---SDKQLSL 248 (1081)
T ss_pred CCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCCCchhheeccCCcEEEEcc---CCCceEE
Confidence 3567899999999853 467888888888887764 444433233344567899999999777744 6999999
Q ss_pred EECCCCcEEEEee-CCCCEEEEEECCCCCeEEEEEecCCCcEEEEECC
Q 014934 363 WNTTTNTHLSCMD-TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYP 409 (415)
Q Consensus 363 wd~~t~~~~~~~~-~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~ 409 (415)
|- +.|-.+.++. ..+.|+.++..|+++.++. |..||+|..|++-
T Consensus 249 fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~--GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 249 FT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVV--GCQDGTIACYNLI 293 (1081)
T ss_pred Ee-ecCeEEeeccccceeEEEEEEccCCceEEE--EEccCeeehhhhH
Confidence 85 5677777765 5678999999999999999 8899999998864
No 175
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.72 E-value=7.4e-16 Score=154.33 Aligned_cols=219 Identities=20% Similarity=0.318 Sum_probs=165.9
Q ss_pred CeEEEEECCCCCeEEeEecCCCCCeEEEEEcC-CCCeEEEEECCCcEEEEECCCCee--eEEe----cCCCccEEEEEee
Q 014934 187 NCVYLWNACSSKVTKLCDLGIDDSVCSVGWAN-RNTHLAVGTSHGKVQIWDASRCKR--VRTM----EGHRLRVGALAWS 259 (415)
Q Consensus 187 ~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp-~g~~la~g~~dg~V~iwd~~~~~~--~~~l----~~h~~~V~~l~~~ 259 (415)
+.+++|++......... +.....|+|++|+| +..+||.|+.+|.|.+||+..+.. ...+ ..|..+|..+.|.
T Consensus 222 ~~~~vW~~~~p~~Pe~~-~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~ 300 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELV-LESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWL 300 (555)
T ss_pred ceEEEEecCCCCCceEE-EecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEe
Confidence 36999999887322222 24578999999999 567899999999999999987654 2222 3589999999997
Q ss_pred ----CCEEEEEeCCCcEEEEECCCCCccEEEe----c-------cccCCeEEEEEeC-CCCEEEEEeCCCcEEEEECCCC
Q 014934 260 ----SSLLSSGSRDKSILQRDIRAQEDFVSKL----S-------GHKSEVCGLKWSY-DNRELASGGNDNRLFVWNQHST 323 (415)
Q Consensus 260 ----~~~l~sgs~dg~I~iwd~~~~~~~~~~~----~-------~h~~~V~~l~~sp-dg~~lasg~~dg~I~iwd~~~~ 323 (415)
+.-|++++.||.|..|+++.-..+.... . .-...+++++|.+ +...|++|+.+|.|+.=+-...
T Consensus 301 ~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~ 380 (555)
T KOG1587|consen 301 QNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGY 380 (555)
T ss_pred ccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCC
Confidence 3569999999999999987644221111 0 1123578899987 6678999999999887443322
Q ss_pred --------ceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECC-CCcEEEEee-CCCCEEEEEECCCCCeEE
Q 014934 324 --------QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTT-TNTHLSCMD-TGSQVCNLVWSKNVNELV 393 (415)
Q Consensus 324 --------~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~-t~~~~~~~~-~~~~V~~l~~s~~~~~l~ 393 (415)
+.+..+..|.+.|.++.++|.+..++.++| |-+++||... ...++..++ ....|++++|||....++
T Consensus 381 ~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g---DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF 457 (555)
T KOG1587|consen 381 TPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG---DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVF 457 (555)
T ss_pred cccccccccccccccccCcceEeeecCCCccceeeeec---cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEE
Confidence 223456678999999999999998888886 9999999987 555665555 445699999999987776
Q ss_pred EEEecCCCcEEEEECCC
Q 014934 394 STHGYSQNQIIVWRYPT 410 (415)
Q Consensus 394 s~~g~~dg~I~vw~~~s 410 (415)
++ +..||.|.+||+..
T Consensus 458 ~~-~d~~G~l~iWDLl~ 473 (555)
T KOG1587|consen 458 AT-VDGDGNLDIWDLLQ 473 (555)
T ss_pred EE-EcCCCceehhhhhc
Confidence 65 67899999999853
No 176
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.72 E-value=1.7e-16 Score=155.50 Aligned_cols=200 Identities=22% Similarity=0.391 Sum_probs=159.8
Q ss_pred CCCCCeEEEEEcCCCCeEEEEECCC-----cEEEEECCCCeeeEEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECC
Q 014934 206 GIDDSVCSVGWANRNTHLAVGTSHG-----KVQIWDASRCKRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIR 278 (415)
Q Consensus 206 ~~~~~V~~v~~sp~g~~la~g~~dg-----~V~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~ 278 (415)
+|.-.|++++.+|+|+++|+++... .|+||+..+...+..+.+|+-.|+.|+|+ +.+|++.++|+++.+|...
T Consensus 523 GHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~ 602 (764)
T KOG1063|consen 523 GHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQ 602 (764)
T ss_pred cCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeee
Confidence 7889999999999999999997753 59999999999999999999999999999 5899999999999999885
Q ss_pred CCCcc---EEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCC--ceeEE--eccCCCcEEEEEEcCCCC----c
Q 014934 279 AQEDF---VSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHST--QPVLK--YCEHTAAVKAIAWSPHLH----G 347 (415)
Q Consensus 279 ~~~~~---~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~--~~~~~--~~~h~~~V~~l~~sp~~~----~ 347 (415)
..... ....+.|..-|.+..|+|++.+|||++.|.+|+||..... +.+.. ...+..+|++++|.|-.. .
T Consensus 603 ~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~ 682 (764)
T KOG1063|consen 603 EDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGD 682 (764)
T ss_pred cccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccc
Confidence 54322 2236789999999999999999999999999999998876 44433 235788999999988543 3
Q ss_pred EEEEEcCCCCCeEEEEECCCCcE-------E------EEeeCCCCEEEEEECCC--------CC--eEEEEEecCCCcEE
Q 014934 348 LLASGGGTADRCIRFWNTTTNTH-------L------SCMDTGSQVCNLVWSKN--------VN--ELVSTHGYSQNQII 404 (415)
Q Consensus 348 llasggg~~d~~I~iwd~~t~~~-------~------~~~~~~~~V~~l~~s~~--------~~--~l~s~~g~~dg~I~ 404 (415)
+++.|- +.|.|.+|....-.. . ..+.+.+.|..+.|.|. .. .|++ |++|..++
T Consensus 683 ~vavGl--e~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~--~g~D~~vr 758 (764)
T KOG1063|consen 683 VVAVGL--EKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAV--GGDDESVR 758 (764)
T ss_pred eEEEEe--cccEEEEEecccccccccceeeeeccccccccChHHhhheeEeccccccccccccceeEEee--ecccceeE
Confidence 667665 899999999651111 0 11123466899999975 23 3455 78999999
Q ss_pred EEECC
Q 014934 405 VWRYP 409 (415)
Q Consensus 405 vw~~~ 409 (415)
++++.
T Consensus 759 i~nv~ 763 (764)
T KOG1063|consen 759 IFNVD 763 (764)
T ss_pred Eeecc
Confidence 99874
No 177
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.71 E-value=4.2e-16 Score=137.13 Aligned_cols=247 Identities=17% Similarity=0.239 Sum_probs=184.1
Q ss_pred CCCCceeccCCCCCCCcceeEeecCCCcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCC
Q 014934 152 PRSPYKILDAPALQDDFYLNLVDWSSHNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHG 230 (415)
Q Consensus 152 ~~~p~~~ld~~~l~~~~~i~~l~ws~~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg 230 (415)
|-.|+-+|. | +.-.++++.|-.+..|..| ..|.|++|++.+......+...+...|+.+...|+ ..|.+-+.|+
T Consensus 3 pPdP~fvLR-p---~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~ 77 (323)
T KOG0322|consen 3 PPDPFFVLR-P---HSSSVTSVLFQANERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDP 77 (323)
T ss_pred CCCCeeEec-c---ccchheehhhccchhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCc
Confidence 345666665 2 2335778888874445555 57999999999998877777666788999998887 4567778899
Q ss_pred cEEEEECCCCeeeEE---------------------------ec--------------------------CCCccEEEEE
Q 014934 231 KVQIWDASRCKRVRT---------------------------ME--------------------------GHRLRVGALA 257 (415)
Q Consensus 231 ~V~iwd~~~~~~~~~---------------------------l~--------------------------~h~~~V~~l~ 257 (415)
.+.+|++.-+..+.. +. +..+.+.|..
T Consensus 78 ~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~ 157 (323)
T KOG0322|consen 78 LLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQD 157 (323)
T ss_pred eEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeee
Confidence 999998754211100 00 1123455555
Q ss_pred ee---C--CEEEEEeCCCcEEEEECCCCCc---------cEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Q 014934 258 WS---S--SLLSSGSRDKSILQRDIRAQED---------FVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHST 323 (415)
Q Consensus 258 ~~---~--~~l~sgs~dg~I~iwd~~~~~~---------~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~ 323 (415)
|. + -+|++|-.+|.+.+||+..+.. .......|.++|.++.+.+.-..=++|+.+..+.+|++...
T Consensus 158 ~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s 237 (323)
T KOG0322|consen 158 KDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHS 237 (323)
T ss_pred ccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccc
Confidence 53 1 2678889999999999988632 23344579999999999876666678888889999998643
Q ss_pred --ce--eEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee-CCCCEEEEEECCCCCeEEEEEec
Q 014934 324 --QP--VLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKNVNELVSTHGY 398 (415)
Q Consensus 324 --~~--~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~-~~~~V~~l~~s~~~~~l~s~~g~ 398 (415)
.. -..+.-..-.|..+..-||++ ++|++| .|+.||+|+.++..++..+. |...|.+++|+|+...+++ ++
T Consensus 238 ~gslq~~~e~~lknpGv~gvrIRpD~K-IlATAG--WD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAa--as 312 (323)
T KOG0322|consen 238 TGSLQIRKEITLKNPGVSGVRIRPDGK-ILATAG--WDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAA--AS 312 (323)
T ss_pred cCcccccceEEecCCCccceEEccCCc-EEeecc--cCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhh--cc
Confidence 21 112223445688999999987 999998 99999999999999998886 7788999999999988888 78
Q ss_pred CCCcEEEEEC
Q 014934 399 SQNQIIVWRY 408 (415)
Q Consensus 399 ~dg~I~vw~~ 408 (415)
.|++|.+|++
T Consensus 313 kD~rISLWkL 322 (323)
T KOG0322|consen 313 KDARISLWKL 322 (323)
T ss_pred CCceEEeeec
Confidence 9999999986
No 178
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.71 E-value=1.3e-14 Score=139.94 Aligned_cols=235 Identities=11% Similarity=0.066 Sum_probs=160.1
Q ss_pred eeEeecCC-CcEEEEE--cCCeEEEEECC-CCCeEEeEecCCCCCeEEEEEcCCCCeEEEEEC-CCcEEEEECCCCe---
Q 014934 170 LNLVDWSS-HNVLAVG--LGNCVYLWNAC-SSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTS-HGKVQIWDASRCK--- 241 (415)
Q Consensus 170 i~~l~ws~-~~~la~~--~d~~V~iwd~~-~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~-dg~V~iwd~~~~~--- 241 (415)
...+.++| ++.|+++ .++.|.+|++. ++++...-.....+....++|+|+|++|++++. ++.|.+|++.+..
T Consensus 37 ~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~ 116 (330)
T PRK11028 37 VQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPV 116 (330)
T ss_pred CccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCC
Confidence 34567888 6666665 35789999986 344433332233456789999999998888764 8899999996432
Q ss_pred -eeEEecCCCccEEEEEee--CCEE-EEEeCCCcEEEEECCCCCccE------EEeccccCCeEEEEEeCCCCEEEEEeC
Q 014934 242 -RVRTMEGHRLRVGALAWS--SSLL-SSGSRDKSILQRDIRAQEDFV------SKLSGHKSEVCGLKWSYDNRELASGGN 311 (415)
Q Consensus 242 -~~~~l~~h~~~V~~l~~~--~~~l-~sgs~dg~I~iwd~~~~~~~~------~~~~~h~~~V~~l~~spdg~~lasg~~ 311 (415)
.+..+. +.....+++++ ++++ ++...++.|.+||+....... .... .......+.|+|+|++|+++..
T Consensus 117 ~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~ 194 (330)
T PRK11028 117 APIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNE 194 (330)
T ss_pred Cceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecC-CCCCCceEEECCCCCEEEEEec
Confidence 233333 22345667777 3566 455567999999998643211 0111 2344678999999999988776
Q ss_pred -CCcEEEEECCC--C--ceeEEeccC------CCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCc----EEEEeeC
Q 014934 312 -DNRLFVWNQHS--T--QPVLKYCEH------TAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNT----HLSCMDT 376 (415)
Q Consensus 312 -dg~I~iwd~~~--~--~~~~~~~~h------~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~----~~~~~~~ 376 (415)
++.|.+||+.. + +.+..+..+ ......+.++|++++++++.. .++.|.+|++.... .+..+..
T Consensus 195 ~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~--~~~~I~v~~i~~~~~~~~~~~~~~~ 272 (330)
T PRK11028 195 LNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDR--TASLISVFSVSEDGSVLSFEGHQPT 272 (330)
T ss_pred CCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecC--CCCeEEEEEEeCCCCeEEEeEEEec
Confidence 89999999973 2 223333221 122346899999998887754 58899999985432 3444445
Q ss_pred CCCEEEEEECCCCCeEEEEEecCCCcEEEEECC
Q 014934 377 GSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYP 409 (415)
Q Consensus 377 ~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~ 409 (415)
+.....+.|+|+|++|+++. ..++.|.+|++.
T Consensus 273 ~~~p~~~~~~~dg~~l~va~-~~~~~v~v~~~~ 304 (330)
T PRK11028 273 ETQPRGFNIDHSGKYLIAAG-QKSHHISVYEID 304 (330)
T ss_pred cccCCceEECCCCCEEEEEE-ccCCcEEEEEEc
Confidence 55667899999999999863 458899999875
No 179
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.71 E-value=1e-15 Score=147.94 Aligned_cols=198 Identities=18% Similarity=0.300 Sum_probs=158.4
Q ss_pred CCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEecCCCccEEEEEeeC----CEEEEEeCCCcEEEEECCCC-
Q 014934 206 GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWSS----SLLSSGSRDKSILQRDIRAQ- 280 (415)
Q Consensus 206 ~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~~----~~l~sgs~dg~I~iwd~~~~- 280 (415)
+|++.|.+|...|.|.+||+|+.||+|+||.+.++.+++++. ..+.|.||+|++ .+|+++-.. .+.+.+..-+
T Consensus 398 GHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~-~~~ivnp~~G~ 475 (733)
T KOG0650|consen 398 GHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGE-CVLIVNPIFGD 475 (733)
T ss_pred ccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecC-ceEEeCccccc
Confidence 899999999999999999999999999999999999999987 456899999994 244444333 2444332111
Q ss_pred -----------------------------------CccEEEeccccCCeEEEEEeCCCCEEEEEeCC---CcEEEEECCC
Q 014934 281 -----------------------------------EDFVSKLSGHKSEVCGLKWSYDNRELASGGND---NRLFVWNQHS 322 (415)
Q Consensus 281 -----------------------------------~~~~~~~~~h~~~V~~l~~spdg~~lasg~~d---g~I~iwd~~~ 322 (415)
+.-+.....|...|..+.|+..|.|||+..-+ ..|.|+++..
T Consensus 476 ~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK 555 (733)
T KOG0650|consen 476 RLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSK 555 (733)
T ss_pred hhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEeccc
Confidence 11123344678899999999999999996654 4699999987
Q ss_pred CceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCC-CEEEEEECCCCCeEEEEEecCCC
Q 014934 323 TQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGS-QVCNLVWSKNVNELVSTHGYSQN 401 (415)
Q Consensus 323 ~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~-~V~~l~~s~~~~~l~s~~g~~dg 401 (415)
.+...-|....+.|.++.|+|...+++++. ...|+|||+..+..+..+.++. .|..++.+|.|..|+. |+.|+
T Consensus 556 ~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT----q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~--gs~d~ 629 (733)
T KOG0650|consen 556 RKSQSPFRKSKGLVQRVKFHPSKPYLFVAT----QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLIL--GSYDK 629 (733)
T ss_pred ccccCchhhcCCceeEEEecCCCceEEEEe----ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEE--ecCCC
Confidence 766666666778899999999999888765 6899999999988877776654 5888999999999999 88999
Q ss_pred cEEEEECCCC
Q 014934 402 QIIVWRYPTM 411 (415)
Q Consensus 402 ~I~vw~~~s~ 411 (415)
.++.+|+.-.
T Consensus 630 k~~WfDldls 639 (733)
T KOG0650|consen 630 KMCWFDLDLS 639 (733)
T ss_pred eeEEEEcccC
Confidence 9999998644
No 180
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.70 E-value=4e-17 Score=162.59 Aligned_cols=235 Identities=18% Similarity=0.285 Sum_probs=185.8
Q ss_pred eeEeecCC-CcEEEEEcC-CeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEec
Q 014934 170 LNLVDWSS-HNVLAVGLG-NCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTME 247 (415)
Q Consensus 170 i~~l~ws~-~~~la~~~d-~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~ 247 (415)
|.|+.+.. +..|..|+| ..|+||..+++.+...+. +|.+.|+.++.+.+..++|+++.|..|++|-+.++..+..+.
T Consensus 193 Vyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~r-Ghs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLr 271 (1113)
T KOG0644|consen 193 VYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCR-GHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLR 271 (1113)
T ss_pred eeeeeeccccceEeecCccceeeeeeccchhhhccCC-CCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHh
Confidence 67888887 777777765 679999999999888887 999999999999999999999999999999999999999999
Q ss_pred CCCccEEEEEeeCCEEEEEeCCCcEEEEECCC-CCccE------------EEe----------------ccccCCeEEEE
Q 014934 248 GHRLRVGALAWSSSLLSSGSRDKSILQRDIRA-QEDFV------------SKL----------------SGHKSEVCGLK 298 (415)
Q Consensus 248 ~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~-~~~~~------------~~~----------------~~h~~~V~~l~ 298 (415)
+|.+.|++++|+|.. +.+.||++++||.+- ....+ ..+ .....++-.++
T Consensus 272 ghtgavtaiafsP~~--sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~ 349 (1113)
T KOG0644|consen 272 GHTGAVTAIAFSPRA--SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLA 349 (1113)
T ss_pred ccccceeeeccCccc--cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhh
Confidence 999999999999855 788999999999881 11000 000 00011222333
Q ss_pred EeCCCCEEEE-----------EeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCC
Q 014934 299 WSYDNRELAS-----------GGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTT 367 (415)
Q Consensus 299 ~spdg~~las-----------g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t 367 (415)
|...+-.+++ +-.+-.+++|++.++..++.+.+|...+..+.++|.+..+..++| .||.+.|||+-.
T Consensus 350 ~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag--~dgst~iwdi~e 427 (1113)
T KOG0644|consen 350 WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAG--YDGSTIIWDIWE 427 (1113)
T ss_pred hhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhcc--CCCceEeeeccc
Confidence 4333333333 334556889999999999999999999999999999998888887 999999999999
Q ss_pred CcEEEEee-CCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCC
Q 014934 368 NTHLSCMD-TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTM 411 (415)
Q Consensus 368 ~~~~~~~~-~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~ 411 (415)
|.+++... .+..+....||++|..++. ...-|+++|...-..
T Consensus 428 g~pik~y~~gh~kl~d~kFSqdgts~~l--sd~hgql~i~g~gqs 470 (1113)
T KOG0644|consen 428 GIPIKHYFIGHGKLVDGKFSQDGTSIAL--SDDHGQLYILGTGQS 470 (1113)
T ss_pred CCcceeeecccceeeccccCCCCceEec--CCCCCceEEeccCCC
Confidence 98877665 4567888899999999888 556788888876443
No 181
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=9e-15 Score=127.40 Aligned_cols=224 Identities=16% Similarity=0.220 Sum_probs=163.0
Q ss_pred EeecCC-CcEEEEE-cCCeEEEEECCC---------CCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCC
Q 014934 172 LVDWSS-HNVLAVG-LGNCVYLWNACS---------SKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRC 240 (415)
Q Consensus 172 ~l~ws~-~~~la~~-~d~~V~iwd~~~---------~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~ 240 (415)
.-+|+| .++|++| .+|.|.+..+.+ ++...+..-.|.++|..++|. ..+|++|+ ||.|+-|.-...
T Consensus 15 ~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E~ 91 (325)
T KOG0649|consen 15 AQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWNEE 91 (325)
T ss_pred HHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeeehhh
Confidence 346888 7778777 579999998753 222222323789999999998 45666655 599999976432
Q ss_pred ee------eEEe--cCC-----CccEEEEEeeC--CEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCE
Q 014934 241 KR------VRTM--EGH-----RLRVGALAWSS--SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRE 305 (415)
Q Consensus 241 ~~------~~~l--~~h-----~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 305 (415)
.. +-.+ ..| -..|++|...| +-++.++.|+.++.||++++. ....+.+|...|.++.--.....
T Consensus 92 ~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~-i~r~~rGHtDYvH~vv~R~~~~q 170 (325)
T KOG0649|consen 92 EESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGR-IQREYRGHTDYVHSVVGRNANGQ 170 (325)
T ss_pred hhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCE-EEEEEcCCcceeeeeeecccCcc
Confidence 11 1001 112 23577777763 556666699999999999997 78899999999999998556668
Q ss_pred EEEEeCCCcEEEEECCCCceeEEecc---------CC-CcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee
Q 014934 306 LASGGNDNRLFVWNQHSTQPVLKYCE---------HT-AAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD 375 (415)
Q Consensus 306 lasg~~dg~I~iwd~~~~~~~~~~~~---------h~-~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~ 375 (415)
+++|++||+++|||.++++.+..++. |. ..|-+++-+.+ -+++|+ ...+.+|+++..++...+.
T Consensus 171 ilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~ed---WlvCGg---Gp~lslwhLrsse~t~vfp 244 (325)
T KOG0649|consen 171 ILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNED---WLVCGG---GPKLSLWHLRSSESTCVFP 244 (325)
T ss_pred eeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCc---eEEecC---CCceeEEeccCCCceEEEe
Confidence 89999999999999999998887753 22 23566666644 566665 5789999999999999998
Q ss_pred CCCCEEEEEECCCCCeEEEEEecCCCcEEEEECC
Q 014934 376 TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYP 409 (415)
Q Consensus 376 ~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~ 409 (415)
....|..+.|..+- +++ ++..+.+.-|.+.
T Consensus 245 ipa~v~~v~F~~d~--vl~--~G~g~~v~~~~l~ 274 (325)
T KOG0649|consen 245 IPARVHLVDFVDDC--VLI--GGEGNHVQSYTLN 274 (325)
T ss_pred cccceeEeeeecce--EEE--eccccceeeeeec
Confidence 88889888886543 444 4455677777654
No 182
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.70 E-value=4e-16 Score=148.91 Aligned_cols=203 Identities=20% Similarity=0.337 Sum_probs=159.5
Q ss_pred cEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEecCCCccEEEEEe
Q 014934 179 NVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAW 258 (415)
Q Consensus 179 ~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~ 258 (415)
.++.++.||.+.|.+ ..+++.+... .|.+.+.|-.|+|||.-|++++.||.|++|.- +|....++-....+|.|++|
T Consensus 77 ~~~i~s~DGkf~il~-k~~rVE~sv~-AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W 153 (737)
T KOG1524|consen 77 TLLICSNDGRFVILN-KSARVERSIS-AHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCARW 153 (737)
T ss_pred eEEEEcCCceEEEec-ccchhhhhhh-hhhhhhhhcccCCCCceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEEE
Confidence 356666899999987 4566666665 78999999999999999999999999999984 45444455556778999999
Q ss_pred eC---CEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCc
Q 014934 259 SS---SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAA 335 (415)
Q Consensus 259 ~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~ 335 (415)
.| +.+++.+ +.+.|=-+.... .+..+++|.+-|.++.|++..+++++||.|-+.+|||. -|..++.-..|..+
T Consensus 154 ~p~S~~vl~c~g--~h~~IKpL~~n~-k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~-~G~~Lf~S~~~ey~ 229 (737)
T KOG1524|consen 154 APNSNSIVFCQG--GHISIKPLAANS-KIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDA-QGANLFTSAAEEYA 229 (737)
T ss_pred CCCCCceEEecC--CeEEEeeccccc-ceeEEeccCcEEEEeecCccccceeecCCceeEEeecc-cCcccccCChhccc
Confidence 84 4555543 556666666555 46678899999999999999999999999999999997 46677777789999
Q ss_pred EEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEEEEecCCCcEEE
Q 014934 336 VKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIV 405 (415)
Q Consensus 336 V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~v 405 (415)
|++++|.|+ .+++.++ -.++|+=.. .-+.|.+++||+||..++. |...|.+.+
T Consensus 230 ITSva~npd--~~~~v~S---~nt~R~~~p----------~~GSifnlsWS~DGTQ~a~--gt~~G~v~~ 282 (737)
T KOG1524|consen 230 ITSVAFNPE--KDYLLWS---YNTARFSSP----------RVGSIFNLSWSADGTQATC--GTSTGQLIV 282 (737)
T ss_pred eeeeeeccc--cceeeee---eeeeeecCC----------CccceEEEEEcCCCceeec--cccCceEEE
Confidence 999999999 3666664 456662222 2357889999999999988 666776654
No 183
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=4.5e-16 Score=148.94 Aligned_cols=204 Identities=19% Similarity=0.323 Sum_probs=160.3
Q ss_pred CCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEe-cCCCccEEEEEee----CCEEEEEeCCCcEEEEECCC-
Q 014934 206 GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTM-EGHRLRVGALAWS----SSLLSSGSRDKSILQRDIRA- 279 (415)
Q Consensus 206 ~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l-~~h~~~V~~l~~~----~~~l~sgs~dg~I~iwd~~~- 279 (415)
+|.+.|.|++|+.+|.+|++|+.|-.+.|||.-..+.+..+ .+|.+.|.++.|- ..++++|..|..|+++|+..
T Consensus 48 GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~ 127 (758)
T KOG1310|consen 48 GHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSS 127 (758)
T ss_pred cccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccc
Confidence 89999999999999999999999999999999888877766 5899999999997 46899999999999999985
Q ss_pred --------CCccEEEeccccCCeEEEEEeCCC-CEEEEEeCCCcEEEEECCCCce----------eEEeccCCCcEEEEE
Q 014934 280 --------QEDFVSKLSGHKSEVCGLKWSYDN-RELASGGNDNRLFVWNQHSTQP----------VLKYCEHTAAVKAIA 340 (415)
Q Consensus 280 --------~~~~~~~~~~h~~~V~~l~~spdg-~~lasg~~dg~I~iwd~~~~~~----------~~~~~~h~~~V~~l~ 340 (415)
.......+..|...|..|+-.|++ ..|.+++.||+|+-+|++.... +..+...--..+++.
T Consensus 128 ~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~lt 207 (758)
T KOG1310|consen 128 KEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLT 207 (758)
T ss_pred cccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeee
Confidence 223445567888899999999988 7899999999999999986421 111112223468899
Q ss_pred EcCCCCcEEEEEcCCCCCeEEEEECCC--------Cc----------EEEEee--C-----C------CCEEEEEECCCC
Q 014934 341 WSPHLHGLLASGGGTADRCIRFWNTTT--------NT----------HLSCMD--T-----G------SQVCNLVWSKNV 389 (415)
Q Consensus 341 ~sp~~~~llasggg~~d~~I~iwd~~t--------~~----------~~~~~~--~-----~------~~V~~l~~s~~~ 389 (415)
.+|...++|+.|+ .|-..++||.+. +. +++.+. + + .-++-+.|+|+|
T Consensus 208 isp~rp~~laVGg--sdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNG 285 (758)
T KOG1310|consen 208 ISPSRPYYLAVGG--SDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNG 285 (758)
T ss_pred ecCCCCceEEecC--CCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEECCCC
Confidence 9999999999997 899999999431 11 122221 0 0 114568999999
Q ss_pred CeEEEEEecCCCcEEEEECCCCcc
Q 014934 390 NELVSTHGYSQNQIIVWRYPTMSK 413 (415)
Q Consensus 390 ~~l~s~~g~~dg~I~vw~~~s~~~ 413 (415)
.+|++.- ....|+++++...+.
T Consensus 286 tElLvs~--~gEhVYlfdvn~~~~ 307 (758)
T KOG1310|consen 286 TELLVSW--GGEHVYLFDVNEDKS 307 (758)
T ss_pred cEEEEee--CCeEEEEEeecCCCC
Confidence 9999854 445899999876653
No 184
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=8.1e-15 Score=134.23 Aligned_cols=222 Identities=22% Similarity=0.334 Sum_probs=152.9
Q ss_pred CcceeEeecCC-CcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCC-CCeEEEEECCCcEEEEECCC----
Q 014934 167 DFYLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANR-NTHLAVGTSHGKVQIWDASR---- 239 (415)
Q Consensus 167 ~~~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~-g~~la~g~~dg~V~iwd~~~---- 239 (415)
+..+..++|++ -..+|++ .|..|++|+..+... ..++......|+|++|-|. ++.|++|+..| |.||....
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~ksst~p-t~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~ 175 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCP-TKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNA 175 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCCCCC-ceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCccccc
Confidence 34577899999 3444444 789999999877433 3333344678999999995 46889988876 88998642
Q ss_pred CeeeE----------EecCCCccEEEEEee--CCEEEEEe-CCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEE
Q 014934 240 CKRVR----------TMEGHRLRVGALAWS--SSLLSSGS-RDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNREL 306 (415)
Q Consensus 240 ~~~~~----------~l~~h~~~V~~l~~~--~~~l~sgs-~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 306 (415)
++.++ ...+| ..|++|.|+ +..+++++ .|..|.|||+.++...... ....+.+.-+.|||||.+|
T Consensus 176 ~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~-~~glgg~slLkwSPdgd~l 253 (445)
T KOG2139|consen 176 NRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLI-PKGLGGFSLLKWSPDGDVL 253 (445)
T ss_pred ccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccc-ccCCCceeeEEEcCCCCEE
Confidence 12111 22345 689999998 46777776 4678999999988742222 2334678899999999999
Q ss_pred EEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCC----Cc--------EE---
Q 014934 307 ASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTT----NT--------HL--- 371 (415)
Q Consensus 307 asg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t----~~--------~~--- 371 (415)
..+.-|+..++|......-......-.+.|...+|+|.|+.||.+.+| .-++|.+.- +. .+
T Consensus 254 faAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sg----sp~lysl~f~~~~~~~~~~~~~k~~lli 329 (445)
T KOG2139|consen 254 FAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSG----SPRLYSLTFDGEDSVFLRPQSIKRVLLI 329 (445)
T ss_pred EEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcC----CceEEEEeecCCCccccCcccceeeeee
Confidence 999999999999654332222222344589999999999999888762 233333321 10 00
Q ss_pred EEe-----e-----CCCCEEEEEECCCCCeEEEEE
Q 014934 372 SCM-----D-----TGSQVCNLVWSKNVNELVSTH 396 (415)
Q Consensus 372 ~~~-----~-----~~~~V~~l~~s~~~~~l~s~~ 396 (415)
..+ . ..+.+.+++|.|.|.+|++..
T Consensus 330 aDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~f 364 (445)
T KOG2139|consen 330 ADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIF 364 (445)
T ss_pred ccchhhhhhcCcccccCccceeeECCCCCEEEEEE
Confidence 011 1 246678999999999999954
No 185
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.68 E-value=1e-15 Score=147.10 Aligned_cols=205 Identities=17% Similarity=0.219 Sum_probs=161.0
Q ss_pred CcceeEeecCC--CcEEEEEcCCeEEEEECCC------CCeEEeEec-CCCCCeEEEEEcCCCCeEEEEECCCcEEEEEC
Q 014934 167 DFYLNLVDWSS--HNVLAVGLGNCVYLWNACS------SKVTKLCDL-GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDA 237 (415)
Q Consensus 167 ~~~i~~l~ws~--~~~la~~~d~~V~iwd~~~------~~~~~~~~~-~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~ 237 (415)
.-++..+.+++ ..++.+..++.+.+|+++. ..+..++.+ +|.++|.|++..+++.++.+|+.||+|+.|++
T Consensus 294 ~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~ 373 (577)
T KOG0642|consen 294 DDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNL 373 (577)
T ss_pred hhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeecc
Confidence 34677888888 4455555789999999932 234445554 89999999999999999999999999999965
Q ss_pred CC------C----eeeEEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccE---------------------
Q 014934 238 SR------C----KRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFV--------------------- 284 (415)
Q Consensus 238 ~~------~----~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~--------------------- 284 (415)
.. . .....+.||...|+.++++ ...|++++.||+++.|+......+.
T Consensus 374 p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a 453 (577)
T KOG0642|consen 374 PPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPA 453 (577)
T ss_pred CCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchhH
Confidence 31 1 2345677999999999998 5789999999999999875433100
Q ss_pred ----------------------EEec--c-----ccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCc
Q 014934 285 ----------------------SKLS--G-----HKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAA 335 (415)
Q Consensus 285 ----------------------~~~~--~-----h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~ 335 (415)
..+. + -...+.-+.++|.+.+.+++..|+.|+++|..++++++....|...
T Consensus 454 ~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~s 533 (577)
T KOG0642|consen 454 HSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDS 533 (577)
T ss_pred hhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchheeeccce
Confidence 0000 0 0123566788899999999999999999999999999999999999
Q ss_pred EEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEe
Q 014934 336 VKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCM 374 (415)
Q Consensus 336 V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~ 374 (415)
|+++++.|+|. .|++++ .|+.+++|.+....++...
T Consensus 534 vtslai~~ng~-~l~s~s--~d~sv~l~kld~k~~~~es 569 (577)
T KOG0642|consen 534 VTSLAIDPNGP-YLMSGS--HDGSVRLWKLDVKTCVLES 569 (577)
T ss_pred ecceeecCCCc-eEEeec--CCceeehhhccchheeecc
Confidence 99999999998 555655 8999999999877666544
No 186
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.66 E-value=5.7e-14 Score=126.86 Aligned_cols=231 Identities=18% Similarity=0.247 Sum_probs=170.1
Q ss_pred EeecCC-CcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEE-EECC------CcEEEEECCCCeee
Q 014934 172 LVDWSS-HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAV-GTSH------GKVQIWDASRCKRV 243 (415)
Q Consensus 172 ~l~ws~-~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~-g~~d------g~V~iwd~~~~~~~ 243 (415)
.++|+. ...++++.+...+||+.+--+.....+. +.+.+.-+..--..++||. |+.+ ..|.|||=...+++
T Consensus 10 svs~NQD~ScFava~~~Gfriyn~~P~ke~~~r~~-~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~~~i 88 (346)
T KOG2111|consen 10 SVSFNQDHSCFAVATDTGFRIYNCDPFKESASRQF-IDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKERCI 88 (346)
T ss_pred EEEEccCCceEEEEecCceEEEecCchhhhhhhcc-ccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccCcEE
Confidence 388888 7789999999999999865222111111 1112222222223444443 4333 46999997777888
Q ss_pred EEecCCCccEEEEEeeCCEEEEEeCCCcEEEEECCCCCccEEEecc--ccCCeEEEEEeCCCCEEEE-EeCCCcEEEEEC
Q 014934 244 RTMEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLSG--HKSEVCGLKWSYDNRELAS-GGNDNRLFVWNQ 320 (415)
Q Consensus 244 ~~l~~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~--h~~~V~~l~~spdg~~las-g~~dg~I~iwd~ 320 (415)
.++. ...+|.++.+.++.|++.- .+.|++|.....-+.++.+.. ....+|+++-+.+..+||. |-.-|.|.|-|+
T Consensus 89 ~el~-f~~~I~~V~l~r~riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL 166 (346)
T KOG2111|consen 89 IELS-FNSEIKAVKLRRDRIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDL 166 (346)
T ss_pred EEEE-eccceeeEEEcCCeEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEh
Confidence 8877 6788999999988888774 567999999855445555442 2345777776666667776 556799999999
Q ss_pred CCCce--eEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCe-EEEEECCCCcEEEEeeCC---CCEEEEEECCCCCeEEE
Q 014934 321 HSTQP--VLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRC-IRFWNTTTNTHLSCMDTG---SQVCNLVWSKNVNELVS 394 (415)
Q Consensus 321 ~~~~~--~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~-I~iwd~~t~~~~~~~~~~---~~V~~l~~s~~~~~l~s 394 (415)
...+. -..+..|...|.+++.+-+|. ++|+++ ..|+ |||||..+|+.++++..+ ..|++++|||+..+|++
T Consensus 167 ~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt-~vATaS--tkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~Lav 243 (346)
T KOG2111|consen 167 ASTKPNAPSIINAHDSDIACVALNLQGT-LVATAS--TKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAV 243 (346)
T ss_pred hhcCcCCceEEEcccCceeEEEEcCCcc-EEEEec--cCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEE
Confidence 87654 467779999999999999997 999987 5554 899999999999999754 56999999999999999
Q ss_pred EEecCCCcEEEEECCC
Q 014934 395 THGYSQNQIIVWRYPT 410 (415)
Q Consensus 395 ~~g~~dg~I~vw~~~s 410 (415)
.++.|+|+|+.+..
T Consensus 244 --sSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 244 --SSDKGTLHIFSLRD 257 (346)
T ss_pred --EcCCCeEEEEEeec
Confidence 67899999998864
No 187
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=6.5e-15 Score=132.78 Aligned_cols=181 Identities=21% Similarity=0.266 Sum_probs=140.1
Q ss_pred CcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECC---CC-----eeeEEecC
Q 014934 178 HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDAS---RC-----KRVRTMEG 248 (415)
Q Consensus 178 ~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~---~~-----~~~~~l~~ 248 (415)
..+|+++ .|..|.||++. |+....+. .....-+..+.+|+|+++|+++..-.|++|.+- .| +.+-.+++
T Consensus 199 ~k~imsas~dt~i~lw~lk-Gq~L~~id-tnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkG 276 (420)
T KOG2096|consen 199 AKYIMSASLDTKICLWDLK-GQLLQSID-TNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKG 276 (420)
T ss_pred ceEEEEecCCCcEEEEecC-Cceeeeec-cccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheecc
Confidence 4566665 68899999998 77766665 233455677899999999999999999999872 22 34456789
Q ss_pred CCccEEEEEeeC--CEEEEEeCCCcEEEEECCCCC------ccEE----EeccccCCeEEEEEeCCCCEEEEEeCCCcEE
Q 014934 249 HRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQE------DFVS----KLSGHKSEVCGLKWSYDNRELASGGNDNRLF 316 (415)
Q Consensus 249 h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~------~~~~----~~~~h~~~V~~l~~spdg~~lasg~~dg~I~ 316 (415)
|+..|..++|++ ..+++.+.||++++||+.-.- ..+. .+..-.++-+.|+++|+|+.||.+.. ..|.
T Consensus 277 H~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~g-s~l~ 355 (420)
T KOG2096|consen 277 HQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFG-SDLK 355 (420)
T ss_pred chhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecC-CceE
Confidence 999999999994 799999999999999986321 1111 12223445568999999999988654 4699
Q ss_pred EEECCCCceeEEec-cCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEEC
Q 014934 317 VWNQHSTQPVLKYC-EHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNT 365 (415)
Q Consensus 317 iwd~~~~~~~~~~~-~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~ 365 (415)
+|..++++..-.++ .|...|.+|+|+++|+ .++++| |+.++++.-
T Consensus 356 ~~~se~g~~~~~~e~~h~~~Is~is~~~~g~-~~atcG---dr~vrv~~n 401 (420)
T KOG2096|consen 356 VFASEDGKDYPELEDIHSTTISSISYSSDGK-YIATCG---DRYVRVIRN 401 (420)
T ss_pred EEEcccCccchhHHHhhcCceeeEEecCCCc-EEeeec---ceeeeeecC
Confidence 99999988776665 5999999999999998 677775 899998763
No 188
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.66 E-value=8.3e-15 Score=149.56 Aligned_cols=226 Identities=21% Similarity=0.341 Sum_probs=167.0
Q ss_pred cEEEEEcCCeEEEEECCCC--CeEEeEe----c-----CCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEec
Q 014934 179 NVLAVGLGNCVYLWNACSS--KVTKLCD----L-----GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTME 247 (415)
Q Consensus 179 ~~la~~~d~~V~iwd~~~~--~~~~~~~----~-----~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~ 247 (415)
-+|+++.||.|+||+-.-. +..++.. + +..+.=.-+.|-....+|.+++.-..|+|||.....++..+.
T Consensus 1125 LlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP 1204 (1387)
T KOG1517|consen 1125 LLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIP 1204 (1387)
T ss_pred heeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecc
Confidence 4666678999999974322 2122211 0 112222556788766666666667899999999888777765
Q ss_pred -CCCccEEEEEee---CCEEEEEeCCCcEEEEECCCCCc--cEEEeccccCC--eEEEEEeCCCCE-EEEEeCCCcEEEE
Q 014934 248 -GHRLRVGALAWS---SSLLSSGSRDKSILQRDIRAQED--FVSKLSGHKSE--VCGLKWSYDNRE-LASGGNDNRLFVW 318 (415)
Q Consensus 248 -~h~~~V~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~--~~~~~~~h~~~--V~~l~~spdg~~-lasg~~dg~I~iw 318 (415)
+....|+++.-+ ++++++|..||.|++||.|.... .+.....|... |..+.+.+.|-- |++|+.||.|++|
T Consensus 1205 ~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~ 1284 (1387)
T KOG1517|consen 1205 YGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLL 1284 (1387)
T ss_pred cCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEE
Confidence 345567887765 68999999999999999997653 56778888877 999999986654 9999999999999
Q ss_pred ECCCCce--eEEeccCC---CcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee--------CCCCEEEEEE
Q 014934 319 NQHSTQP--VLKYCEHT---AAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD--------TGSQVCNLVW 385 (415)
Q Consensus 319 d~~~~~~--~~~~~~h~---~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~--------~~~~V~~l~~ 385 (415)
|++.... ...+..|- +.++++..+++.. ++|+|+ . +.|+||++. |+.+..+. ....+.+++|
T Consensus 1285 DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hap-iiAsGs--~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~F 1359 (1387)
T KOG1517|consen 1285 DLRMSSKETFLTIVAHWEYGSALTALTVHEHAP-IIASGS--A-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAF 1359 (1387)
T ss_pred ecccCcccccceeeeccccCccceeeeeccCCC-eeeecC--c-ceEEEEecC-hhhhcccccCcccccCcCCCcceeee
Confidence 9987422 12222332 3599999999987 999986 4 999999986 44444443 1245789999
Q ss_pred CCCCCeEEEEEecCCCcEEEEECCCC
Q 014934 386 SKNVNELVSTHGYSQNQIIVWRYPTM 411 (415)
Q Consensus 386 s~~~~~l~s~~g~~dg~I~vw~~~s~ 411 (415)
+|..-.|++ |+.|+.|.||..+..
T Consensus 1360 HP~~~llAa--G~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1360 HPHRLLLAA--GSADSTVSIYSCEKP 1383 (1387)
T ss_pred cchhHhhhh--ccCCceEEEeecCCc
Confidence 999988888 899999999998754
No 189
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.66 E-value=1.6e-15 Score=140.59 Aligned_cols=185 Identities=24% Similarity=0.394 Sum_probs=149.2
Q ss_pred CCCeEEEEEcCCCC-eEEEEECCCcEEEEECCCC---------eeeEEecCCCccEEEEEeeC--CEEEEEeCCCcEEEE
Q 014934 208 DDSVCSVGWANRNT-HLAVGTSHGKVQIWDASRC---------KRVRTMEGHRLRVGALAWSS--SLLSSGSRDKSILQR 275 (415)
Q Consensus 208 ~~~V~~v~~sp~g~-~la~g~~dg~V~iwd~~~~---------~~~~~l~~h~~~V~~l~~~~--~~l~sgs~dg~I~iw 275 (415)
..+|.++.|.++.. .||+|+.|..|+||-+..+ +.+..+..|...|+++.|++ ++|++|+.+|.|.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 57899999998766 9999999999999987542 23456778999999999994 699999999999999
Q ss_pred ECC--------C-----CC--ccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCcEEEEE
Q 014934 276 DIR--------A-----QE--DFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIA 340 (415)
Q Consensus 276 d~~--------~-----~~--~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~ 340 (415)
-.. + .+ .....+.+|..+|..++|+|+++++++|+.|+.+++||+..|+.+..+.+|...|..++
T Consensus 93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgva 172 (434)
T KOG1009|consen 93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVA 172 (434)
T ss_pred EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceee
Confidence 765 2 11 13456678999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee--------------------C----CCCEEEEEECCCCCeEEEE
Q 014934 341 WSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD--------------------T----GSQVCNLVWSKNVNELVST 395 (415)
Q Consensus 341 ~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~--------------------~----~~~V~~l~~s~~~~~l~s~ 395 (415)
|.|.+.++ ++-+ .|+..+.+.+...+.++.+. + .+....++|+|+|..|++-
T Consensus 173 wDpl~qyv-~s~s--~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtP 248 (434)
T KOG1009|consen 173 WDPLNQYV-ASKS--SDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTP 248 (434)
T ss_pred cchhhhhh-hhhc--cCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcc
Confidence 99998744 4443 57777777766544333221 0 1224568999999999873
No 190
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.66 E-value=7.2e-14 Score=134.82 Aligned_cols=225 Identities=12% Similarity=0.124 Sum_probs=151.4
Q ss_pred EEEEcCCeEEEEECCC-CCeEEeEecCCCCCeEEEEEcCCCCeEEEEE-CCCcEEEEECCC-Cee--eEEecCCCccEEE
Q 014934 181 LAVGLGNCVYLWNACS-SKVTKLCDLGIDDSVCSVGWANRNTHLAVGT-SHGKVQIWDASR-CKR--VRTMEGHRLRVGA 255 (415)
Q Consensus 181 la~~~d~~V~iwd~~~-~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~-~dg~V~iwd~~~-~~~--~~~l~~h~~~V~~ 255 (415)
++.+.++.|++|++.+ +++..+..+...+....++++|++++|++++ .++.|.+|++.. ++. +.... ..+....
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~ 84 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTH 84 (330)
T ss_pred EEcCCCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceE
Confidence 3334678999999964 4443333334456788899999999987765 478899999963 332 22222 2334667
Q ss_pred EEee--CCEEEEEe-CCCcEEEEECCCCCc---cEEEeccccCCeEEEEEeCCCCEEEEEe-CCCcEEEEECCCCceeE-
Q 014934 256 LAWS--SSLLSSGS-RDKSILQRDIRAQED---FVSKLSGHKSEVCGLKWSYDNRELASGG-NDNRLFVWNQHSTQPVL- 327 (415)
Q Consensus 256 l~~~--~~~l~sgs-~dg~I~iwd~~~~~~---~~~~~~~h~~~V~~l~~spdg~~lasg~-~dg~I~iwd~~~~~~~~- 327 (415)
++++ +++|++++ .++.|.+||+..... .+..+. +.....+++++|+++++++++ .++.|.+||+.+...+.
T Consensus 85 i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~ 163 (330)
T PRK11028 85 ISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVA 163 (330)
T ss_pred EEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccc
Confidence 8888 45666665 488999999974321 122222 334567789999999886544 66999999997633221
Q ss_pred ------EeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCC--Cc--EEEEeeC-------CCCEEEEEECCCCC
Q 014934 328 ------KYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTT--NT--HLSCMDT-------GSQVCNLVWSKNVN 390 (415)
Q Consensus 328 ------~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t--~~--~~~~~~~-------~~~V~~l~~s~~~~ 390 (415)
.. ........++|+|++++++++.. .++.|.+|++.. ++ .+..+.. ......+.++|+++
T Consensus 164 ~~~~~~~~-~~g~~p~~~~~~pdg~~lyv~~~--~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~ 240 (330)
T PRK11028 164 QEPAEVTT-VEGAGPRHMVFHPNQQYAYCVNE--LNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGR 240 (330)
T ss_pred cCCCceec-CCCCCCceEEECCCCCEEEEEec--CCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCC
Confidence 11 12344678999999998877765 589999999973 33 3333321 11234688999999
Q ss_pred eEEEEEecCCCcEEEEECCCC
Q 014934 391 ELVSTHGYSQNQIIVWRYPTM 411 (415)
Q Consensus 391 ~l~s~~g~~dg~I~vw~~~s~ 411 (415)
+|+++ ...++.|.+|++.+.
T Consensus 241 ~lyv~-~~~~~~I~v~~i~~~ 260 (330)
T PRK11028 241 HLYAC-DRTASLISVFSVSED 260 (330)
T ss_pred EEEEe-cCCCCeEEEEEEeCC
Confidence 99985 345789999998543
No 191
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.65 E-value=8.5e-15 Score=132.18 Aligned_cols=200 Identities=18% Similarity=0.232 Sum_probs=161.8
Q ss_pred CCCeEEEEEcCCCCeEEEEECCCcEEEEECCCC---eeeEEecCCCccEEEEEeeC--CEEEEEeCCCcEEEEECCCCC-
Q 014934 208 DDSVCSVGWANRNTHLAVGTSHGKVQIWDASRC---KRVRTMEGHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQE- 281 (415)
Q Consensus 208 ~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~---~~~~~l~~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~- 281 (415)
..+|+|.+|++|+..+|++..+..|.||..... +..++++.|...|++++|++ +.|++|+.|+.-++|....+.
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~ 89 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGT 89 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCe
Confidence 478999999999999999999999999998654 57788999999999999994 789999999999999985543
Q ss_pred -ccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCcee----EEeccCCCcEEEEEEcCCCCcEEEEEcCCC
Q 014934 282 -DFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPV----LKYCEHTAAVKAIAWSPHLHGLLASGGGTA 356 (415)
Q Consensus 282 -~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~----~~~~~h~~~V~~l~~sp~~~~llasggg~~ 356 (415)
.+...+..+....+++.|+|.++.||+|+.-..|.||-.+...-- +.-+.+...|.++.|+|++- ||++|+ .
T Consensus 90 WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnV-LlaaGs--~ 166 (361)
T KOG1523|consen 90 WKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNV-LLAAGS--T 166 (361)
T ss_pred eccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcc-eecccc--c
Confidence 233455678889999999999999999999999999988654322 12235778899999999864 777776 8
Q ss_pred CCeEEEEECC-----C-------------CcEEEEe-eCCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCCc
Q 014934 357 DRCIRFWNTT-----T-------------NTHLSCM-DTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMS 412 (415)
Q Consensus 357 d~~I~iwd~~-----t-------------~~~~~~~-~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~ 412 (415)
|+..|+|..- . |+++.+. ..++.|..+.|+|+|..|+- -+.|..+.+=|.....
T Consensus 167 D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~law--v~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 167 DGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAW--VGHDSTVSFVDAAGPS 239 (361)
T ss_pred CcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeE--ecCCCceEEeecCCCc
Confidence 9999999652 1 2233334 35678999999999999998 4578899888876543
No 192
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.65 E-value=2.1e-14 Score=143.44 Aligned_cols=205 Identities=16% Similarity=0.089 Sum_probs=141.1
Q ss_pred CeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECC---CcEEEEECCCCee--eEEecCCCccEEEEEee--
Q 014934 187 NCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSH---GKVQIWDASRCKR--VRTMEGHRLRVGALAWS-- 259 (415)
Q Consensus 187 ~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~d---g~V~iwd~~~~~~--~~~l~~h~~~V~~l~~~-- 259 (415)
..|++||........+. .+...+.+..|+|||++|+.++.+ ..|.+||+.+++. +..+.+| ...++|+
T Consensus 184 ~~i~i~d~dg~~~~~lt--~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPD 258 (429)
T PRK01742 184 YEVRVADYDGFNQFIVN--RSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPD 258 (429)
T ss_pred EEEEEECCCCCCceEec--cCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCC
Confidence 58999998776643332 566789999999999999987654 3699999988753 3334444 3467888
Q ss_pred CCEEEEE-eCCCcEEEE--ECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEe-CCCcEEEEECCCC-ceeEEeccCCC
Q 014934 260 SSLLSSG-SRDKSILQR--DIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGG-NDNRLFVWNQHST-QPVLKYCEHTA 334 (415)
Q Consensus 260 ~~~l~sg-s~dg~I~iw--d~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~-~dg~I~iwd~~~~-~~~~~~~~h~~ 334 (415)
++.|+.+ +.+|.+.+| |+..+. ...+..+...+....|+|||+.|+.++ .++...||++... .....+ .+..
T Consensus 259 G~~La~~~~~~g~~~Iy~~d~~~~~--~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~ 335 (429)
T PRK01742 259 GSRLAFASSKDGVLNIYVMGANGGT--PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG 335 (429)
T ss_pred CCEEEEEEecCCcEEEEEEECCCCC--eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC
Confidence 4566655 468875555 665544 455666777888999999999877655 5677777776432 222333 4443
Q ss_pred cEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEEEEecCCCcEEEEEC
Q 014934 335 AVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRY 408 (415)
Q Consensus 335 ~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~ 408 (415)
..++|+|+|+.+++++ .++ +.+||+.+++....... .....+.|+|+|+.|+. ++.++.+.+|.+
T Consensus 336 --~~~~~SpDG~~ia~~~---~~~-i~~~Dl~~g~~~~lt~~-~~~~~~~~sPdG~~i~~--~s~~g~~~~l~~ 400 (429)
T PRK01742 336 --YSAQISADGKTLVMIN---GDN-VVKQDLTSGSTEVLSST-FLDESPSISPNGIMIIY--SSTQGLGKVLQL 400 (429)
T ss_pred --CCccCCCCCCEEEEEc---CCC-EEEEECCCCCeEEecCC-CCCCCceECCCCCEEEE--EEcCCCceEEEE
Confidence 4578999999665554 344 66699999876533222 23456889999999998 446777777765
No 193
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.64 E-value=6e-14 Score=143.38 Aligned_cols=236 Identities=18% Similarity=0.232 Sum_probs=173.3
Q ss_pred eeEeecCC-CcEEEEEcC-CeEEEEECCCCCeEEeEecC--CCCCeEEEEEcC--CCCeEEEEECCCcEEEEECC-----
Q 014934 170 LNLVDWSS-HNVLAVGLG-NCVYLWNACSSKVTKLCDLG--IDDSVCSVGWAN--RNTHLAVGTSHGKVQIWDAS----- 238 (415)
Q Consensus 170 i~~l~ws~-~~~la~~~d-~~V~iwd~~~~~~~~~~~~~--~~~~V~~v~~sp--~g~~la~g~~dg~V~iwd~~----- 238 (415)
-..+.++| ...++++.| ..|.+||.+.++...-+..+ ....|+.+.+-. |..++++|+.||.|+||+--
T Consensus 1067 pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~ 1146 (1387)
T KOG1517|consen 1067 PKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWK 1146 (1387)
T ss_pred CceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccC
Confidence 34567788 667777764 68999999999887766542 256799999875 45689999999999999742
Q ss_pred CCeeeEEecC-------CCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEe-CCCCEEEE
Q 014934 239 RCKRVRTMEG-------HRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWS-YDNRELAS 308 (415)
Q Consensus 239 ~~~~~~~l~~-------h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s-pdg~~las 308 (415)
+.+.+....+ ..+.-.-++|. ...|++++.-+.|+|||......+.....+...-|+++.-+ +.|+.+|+
T Consensus 1147 ~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~A 1226 (1387)
T KOG1517|consen 1147 KPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAA 1226 (1387)
T ss_pred CceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEE
Confidence 2234433321 11122345676 45666666789999999987764333444555567777654 35799999
Q ss_pred EeCCCcEEEEECCCC---ceeEEeccCCCc--EEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEE--EEee----CC
Q 014934 309 GGNDNRLFVWNQHST---QPVLKYCEHTAA--VKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHL--SCMD----TG 377 (415)
Q Consensus 309 g~~dg~I~iwd~~~~---~~~~~~~~h~~~--V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~--~~~~----~~ 377 (415)
|..||.|++||.+.. ..+..++.|+.. |..+.+.+.|-.-|++|+ .||.|++||++..... ..+. .+
T Consensus 1227 GfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs--~~G~I~~~DlR~~~~e~~~~iv~~~~yG 1304 (1387)
T KOG1517|consen 1227 GFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGS--QDGDIQLLDLRMSSKETFLTIVAHWEYG 1304 (1387)
T ss_pred eecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeec--cCCeEEEEecccCcccccceeeeccccC
Confidence 999999999998865 356777889888 999999998876677777 8999999999974221 1222 35
Q ss_pred CCEEEEEECCCCCeEEEEEecCCCcEEEEECCC
Q 014934 378 SQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPT 410 (415)
Q Consensus 378 ~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s 410 (415)
+.++++..+++...+++ |+. +.|+||++..
T Consensus 1305 s~lTal~VH~hapiiAs--Gs~-q~ikIy~~~G 1334 (1387)
T KOG1517|consen 1305 SALTALTVHEHAPIIAS--GSA-QLIKIYSLSG 1334 (1387)
T ss_pred ccceeeeeccCCCeeee--cCc-ceEEEEecCh
Confidence 67999999999999998 665 8999999864
No 194
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.64 E-value=2.1e-15 Score=136.50 Aligned_cols=198 Identities=16% Similarity=0.279 Sum_probs=150.3
Q ss_pred CCcceeEeecCCC--cEEE-EEcCCeEEEEECCCCCeEEeEec--CCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCC
Q 014934 166 DDFYLNLVDWSSH--NVLA-VGLGNCVYLWNACSSKVTKLCDL--GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRC 240 (415)
Q Consensus 166 ~~~~i~~l~ws~~--~~la-~~~d~~V~iwd~~~~~~~~~~~~--~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~ 240 (415)
.+..||.+.+.|. ++|. ++.|..|++||+++..++.++-- +|.+.|.++.|+.+|.+|++|+.|-.+++|++...
T Consensus 134 hG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~ 213 (385)
T KOG1034|consen 134 HGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVK 213 (385)
T ss_pred cCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChh
Confidence 3456899999993 3444 44689999999999998887743 78999999999999999999999999999998631
Q ss_pred e------e-------------------eE---EecCCCccEEEEEeeCCEEEEEeCCCcEEEEECCCCCc----------
Q 014934 241 K------R-------------------VR---TMEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQED---------- 282 (415)
Q Consensus 241 ~------~-------------------~~---~l~~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~---------- 282 (415)
+ + .. +-.-|...|-|+.|-++++++-+-++.|..|.....++
T Consensus 214 ~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es 293 (385)
T KOG1034|consen 214 EFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPES 293 (385)
T ss_pred HHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCcc
Confidence 1 0 00 11247888999999999999999999999998732111
Q ss_pred ---cEEEeccccCCeEEEEE--eCCCCEEEEEeCCCcEEEEECCCCcee--EEec--cCCCcEEEEEEcCCCCcEEEEEc
Q 014934 283 ---FVSKLSGHKSEVCGLKW--SYDNRELASGGNDNRLFVWNQHSTQPV--LKYC--EHTAAVKAIAWSPHLHGLLASGG 353 (415)
Q Consensus 283 ---~~~~~~~h~~~V~~l~~--spdg~~lasg~~dg~I~iwd~~~~~~~--~~~~--~h~~~V~~l~~sp~~~~llasgg 353 (415)
.+..+.-....|.-+.| .|-++.||.|...|.|++||++...+. .++. .....|...+|+.++..|++.+
T Consensus 294 ~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vc- 372 (385)
T KOG1034|consen 294 ATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVC- 372 (385)
T ss_pred ceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEe-
Confidence 12223333445555554 567889999999999999999987653 1221 2346789999999999777776
Q ss_pred CCCCCeEEEEECC
Q 014934 354 GTADRCIRFWNTT 366 (415)
Q Consensus 354 g~~d~~I~iwd~~ 366 (415)
.|++|.-||..
T Consensus 373 --dd~~Vwrwdrv 383 (385)
T KOG1034|consen 373 --DDGTVWRWDRV 383 (385)
T ss_pred --CCCcEEEEEee
Confidence 59999999864
No 195
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=3.8e-15 Score=142.63 Aligned_cols=206 Identities=20% Similarity=0.269 Sum_probs=157.4
Q ss_pred CCCcceeEeecCC-CcEEEEEcC-CeEEEEECCCCCeEEeEecCCCCCeEEEEEcC--CCCeEEEEECCCcEEEEECCCC
Q 014934 165 QDDFYLNLVDWSS-HNVLAVGLG-NCVYLWNACSSKVTKLCDLGIDDSVCSVGWAN--RNTHLAVGTSHGKVQIWDASRC 240 (415)
Q Consensus 165 ~~~~~i~~l~ws~-~~~la~~~d-~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp--~g~~la~g~~dg~V~iwd~~~~ 240 (415)
...-+|||++|+. +.+|+.|+| -.+.|||.-..+....+..+|...|.++.|-| +...+++|..|..|+++|+...
T Consensus 48 GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~ 127 (758)
T KOG1310|consen 48 GHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSS 127 (758)
T ss_pred cccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccc
Confidence 3456899999999 899999976 57999999988988888889999999999999 4568999999999999999742
Q ss_pred ----------eeeEEecCCCccEEEEEee---CCEEEEEeCCCcEEEEECCCCCccEEEe---------ccccCCeEEEE
Q 014934 241 ----------KRVRTMEGHRLRVGALAWS---SSLLSSGSRDKSILQRDIRAQEDFVSKL---------SGHKSEVCGLK 298 (415)
Q Consensus 241 ----------~~~~~l~~h~~~V~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~---------~~h~~~V~~l~ 298 (415)
...+.+..|..+|..|+-. |+.+.+++.||+|+.+|+|....+.... ...--+..++.
T Consensus 128 ~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~lt 207 (758)
T KOG1310|consen 128 KEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLT 207 (758)
T ss_pred cccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeee
Confidence 2334455688888888876 5899999999999999999754222111 11223567889
Q ss_pred EeC-CCCEEEEEeCCCcEEEEECCC--------C----------ceeEEec-cCC-----------CcEEEEEEcCCCCc
Q 014934 299 WSY-DNRELASGGNDNRLFVWNQHS--------T----------QPVLKYC-EHT-----------AAVKAIAWSPHLHG 347 (415)
Q Consensus 299 ~sp-dg~~lasg~~dg~I~iwd~~~--------~----------~~~~~~~-~h~-----------~~V~~l~~sp~~~~ 347 (415)
++| +..+||+|+.|--.++||.+. + .++..|. +|. ..++-++|+|+|..
T Consensus 208 isp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtE 287 (758)
T KOG1310|consen 208 ISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTE 287 (758)
T ss_pred ecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEECCCCcE
Confidence 998 456799999999999999432 1 1222221 121 12466899999999
Q ss_pred EEEEEcCCCCCeEEEEECCCCcEEEE
Q 014934 348 LLASGGGTADRCIRFWNTTTNTHLSC 373 (415)
Q Consensus 348 llasggg~~d~~I~iwd~~t~~~~~~ 373 (415)
||++-+ ...|+++|+..++....
T Consensus 288 lLvs~~---gEhVYlfdvn~~~~~~~ 310 (758)
T KOG1310|consen 288 LLVSWG---GEHVYLFDVNEDKSPTP 310 (758)
T ss_pred EEEeeC---CeEEEEEeecCCCCcee
Confidence 999986 56899999988765443
No 196
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.64 E-value=2e-14 Score=137.56 Aligned_cols=206 Identities=15% Similarity=0.240 Sum_probs=153.3
Q ss_pred CcEEEEEcCCeEEEEECCCCCeE----EeEecCCCCCeEEEEE-----cCCCCeEEEEECCCcEEEEECCCCeeeEEec-
Q 014934 178 HNVLAVGLGNCVYLWNACSSKVT----KLCDLGIDDSVCSVGW-----ANRNTHLAVGTSHGKVQIWDASRCKRVRTME- 247 (415)
Q Consensus 178 ~~~la~~~d~~V~iwd~~~~~~~----~~~~~~~~~~V~~v~~-----sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~- 247 (415)
+..|+...+..+|+|+...+... ....+. ....+|-+| .++|--|++|-..|.|++.|....+..+.+.
T Consensus 135 gd~lcFnvg~~lyv~~~~g~~~~~~pi~k~~y~-gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~~~~~sklfne 213 (636)
T KOG2394|consen 135 GDRLCFNVGRELYVYSYRGAADLSKPIDKREYK-GTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPINFEVSKLFNE 213 (636)
T ss_pred CCEEEEecCCeEEEEEccCcchhccchhhhccc-CCCCceecccccccCCCCcceEEeeccCceEEecchhhHHHHhhhh
Confidence 67788888889999988743211 111111 223344444 3567788999999999999986633222121
Q ss_pred ---CCCccEEEEEee---CCEEEEEeCCCcEEEEECCCCC---------------------------ccEEEeccccCCe
Q 014934 248 ---GHRLRVGALAWS---SSLLSSGSRDKSILQRDIRAQE---------------------------DFVSKLSGHKSEV 294 (415)
Q Consensus 248 ---~h~~~V~~l~~~---~~~l~sgs~dg~I~iwd~~~~~---------------------------~~~~~~~~h~~~V 294 (415)
-....|+|+.|- +..++.+-.+|.+++||..... .++..+.-....|
T Consensus 214 ~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~i 293 (636)
T KOG2394|consen 214 ERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSI 293 (636)
T ss_pred cccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccc
Confidence 134789999997 4788889999999999864210 1122222234578
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEe
Q 014934 295 CGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCM 374 (415)
Q Consensus 295 ~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~ 374 (415)
..++|+|||++||+.+.||.++|||..+.+.+-.++..-+...|++|+|||+ ++++|| +|..|.||.+..++.+..=
T Consensus 294 n~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGK-yIvtGG--EDDLVtVwSf~erRVVARG 370 (636)
T KOG2394|consen 294 NEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGK-YIVTGG--EDDLVTVWSFEERRVVARG 370 (636)
T ss_pred cceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCcc-EEEecC--CcceEEEEEeccceEEEec
Confidence 8999999999999999999999999999888877777788999999999998 778887 9999999999998887654
Q ss_pred e-CCCCEEEEEECC
Q 014934 375 D-TGSQVCNLVWSK 387 (415)
Q Consensus 375 ~-~~~~V~~l~~s~ 387 (415)
+ |.+.|..++|.|
T Consensus 371 qGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 371 QGHKSWVSVVAFDP 384 (636)
T ss_pred cccccceeeEeecc
Confidence 3 788999999983
No 197
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.63 E-value=4.5e-14 Score=125.23 Aligned_cols=138 Identities=15% Similarity=0.336 Sum_probs=104.0
Q ss_pred cEEEEECCCCCccEEEec-cccCCeEEEEEeCCCCEEEEE--eCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCc
Q 014934 271 SILQRDIRAQEDFVSKLS-GHKSEVCGLKWSYDNRELASG--GNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHG 347 (415)
Q Consensus 271 ~I~iwd~~~~~~~~~~~~-~h~~~V~~l~~spdg~~lasg--~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ 347 (415)
...+|.++........+. ...++|.+++|+|+|+.||+. ..++.|.+||++ ++.+..+. ...+..+.|+|+|+.
T Consensus 38 ~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~ 114 (194)
T PF08662_consen 38 EFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRF 114 (194)
T ss_pred eEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCCE
Confidence 345555544433344443 234579999999999998764 456799999996 66777763 567789999999997
Q ss_pred EEEEEcCCCCCeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEEEEec----CCCcEEEEECCCCcc
Q 014934 348 LLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGY----SQNQIIVWRYPTMSK 413 (415)
Q Consensus 348 llasggg~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~----~dg~I~vw~~~s~~~ 413 (415)
++++|-|...|.|.+||+.+.+.+...++.. +..++|+|+|++|+++... .|+.++||++. +++
T Consensus 115 l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~-~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~ 182 (194)
T PF08662_consen 115 LVLAGFGNLNGDLEFWDVRKKKKISTFEHSD-ATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRL 182 (194)
T ss_pred EEEEEccCCCcEEEEEECCCCEEeeccccCc-EEEEEEcCCCCEEEEEEeccceeccccEEEEEec-CeE
Confidence 7766645567889999999999988876654 7889999999999997432 48999999995 443
No 198
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.63 E-value=4e-13 Score=134.52 Aligned_cols=217 Identities=13% Similarity=0.132 Sum_probs=154.4
Q ss_pred eEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEEC---CCcEEEEECCCCeeeEEecCCCccEEEEEee--CCE
Q 014934 188 CVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTS---HGKVQIWDASRCKRVRTMEGHRLRVGALAWS--SSL 262 (415)
Q Consensus 188 ~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~---dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~ 262 (415)
.|++||........+. .+...+.+.+|+|||+.|+..+. +..|.+||+.+++.. .+..+.+.+...+|+ ++.
T Consensus 183 ~l~~~d~dg~~~~~lt--~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~ 259 (435)
T PRK05137 183 RLAIMDQDGANVRYLT--DGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRK 259 (435)
T ss_pred EEEEECCCCCCcEEEe--cCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCE
Confidence 7999998776665544 56678999999999999988764 467999999887653 445566677788898 444
Q ss_pred E-EEEeCCCc--EEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeC-C--CcEEEEECCCCceeEEeccCCCcE
Q 014934 263 L-SSGSRDKS--ILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGN-D--NRLFVWNQHSTQPVLKYCEHTAAV 336 (415)
Q Consensus 263 l-~sgs~dg~--I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~-d--g~I~iwd~~~~~~~~~~~~h~~~V 336 (415)
| ++.+.++. |++||+.++. ...+..+........|+|||+.|+..+. + ..|++||+.+++. ..+..+...+
T Consensus 260 la~~~~~~g~~~Iy~~d~~~~~--~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~-~~lt~~~~~~ 336 (435)
T PRK05137 260 VVMSLSQGGNTDIYTMDLRSGT--TTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP-RRISFGGGRY 336 (435)
T ss_pred EEEEEecCCCceEEEEECCCCc--eEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe-EEeecCCCcc
Confidence 4 56666665 7778888765 4556666666778999999999887764 2 3689999876654 3444445567
Q ss_pred EEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEEEEecCC----CcEEEEECCCC
Q 014934 337 KAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQ----NQIIVWRYPTM 411 (415)
Q Consensus 337 ~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~d----g~I~vw~~~s~ 411 (415)
....|+|+|+.++.+.....+..|.+||+.++.. ..+..+..+....|+|||+.|+.++.... ..|.++++...
T Consensus 337 ~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~ 414 (435)
T PRK05137 337 STPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTSGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGR 414 (435)
T ss_pred cCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccCCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCC
Confidence 7789999999777765321235788999866543 34444445778999999999887533221 36778887653
No 199
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.63 E-value=1.5e-12 Score=119.77 Aligned_cols=195 Identities=17% Similarity=0.182 Sum_probs=152.4
Q ss_pred CCCCcceeEeecCCCcEEEEEcC--CeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCe
Q 014934 164 LQDDFYLNLVDWSSHNVLAVGLG--NCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCK 241 (415)
Q Consensus 164 l~~~~~i~~l~ws~~~~la~~~d--~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~ 241 (415)
...+.+|.-+-|+..-+..++.+ ..+++++.+.+..+..+. ....|.+|.++ .++|+++-.+ .|.|||+++.+
T Consensus 43 ~~~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~--fpt~IL~VrmN--r~RLvV~Lee-~IyIydI~~Mk 117 (391)
T KOG2110|consen 43 DTEGVSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKKTTICEIF--FPTSILAVRMN--RKRLVVCLEE-SIYIYDIKDMK 117 (391)
T ss_pred cCCCeEEEEeecccceeEEEecCCCceEEEEEcccCceEEEEe--cCCceEEEEEc--cceEEEEEcc-cEEEEecccce
Confidence 34566777777887766666654 469999988777665554 35689999986 4577777665 49999999999
Q ss_pred eeEEecC---CCccEEEEEeeC--CEEEEE--eCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCc
Q 014934 242 RVRTMEG---HRLRVGALAWSS--SLLSSG--SRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNR 314 (415)
Q Consensus 242 ~~~~l~~---h~~~V~~l~~~~--~~l~sg--s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~ 314 (415)
.+.++.. +...+.++..+. .+|+-- ...|.|.+||..+-. .+..+..|++++.+|+|+++|.+||+++..|+
T Consensus 118 lLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~-~v~~I~aH~~~lAalafs~~G~llATASeKGT 196 (391)
T KOG2110|consen 118 LLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQ-PVNTINAHKGPLAALAFSPDGTLLATASEKGT 196 (391)
T ss_pred eehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccce-eeeEEEecCCceeEEEECCCCCEEEEeccCce
Confidence 8888763 455677777773 466543 346899999998876 67888999999999999999999999999996
Q ss_pred -EEEEECCCCceeEEeccCC--CcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCC
Q 014934 315 -LFVWNQHSTQPVLKYCEHT--AAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTT 367 (415)
Q Consensus 315 -I~iwd~~~~~~~~~~~~h~--~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t 367 (415)
|+||.+.+|+.+.+|+--. ..|.+|+|+|++..|.+++ ..++|++|.+..
T Consensus 197 VIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS---~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 197 VIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASS---NTETVHIFKLEK 249 (391)
T ss_pred EEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEec---CCCeEEEEEecc
Confidence 7899999999999997433 4578999999998444444 689999998863
No 200
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.61 E-value=6.3e-14 Score=126.59 Aligned_cols=223 Identities=17% Similarity=0.270 Sum_probs=169.9
Q ss_pred ceeEeecCC-CcEEEEEc-CCeEEEEECCCCC-eEEeEec-CCCCCeEEEEEcCCCCeEEEEECCCcEEEEEC-CCC--e
Q 014934 169 YLNLVDWSS-HNVLAVGL-GNCVYLWNACSSK-VTKLCDL-GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDA-SRC--K 241 (415)
Q Consensus 169 ~i~~l~ws~-~~~la~~~-d~~V~iwd~~~~~-~~~~~~~-~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~-~~~--~ 241 (415)
.|+|.+|++ ...+|++. ...|.||.....+ ......+ .|...|++|+|+|..+.|++|+.|..-++|.. ..+ +
T Consensus 12 pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~Wk 91 (361)
T KOG1523|consen 12 PITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWK 91 (361)
T ss_pred ceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeec
Confidence 488999999 67788885 4589999887776 2222222 78899999999999999999999999999998 333 4
Q ss_pred eeEEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCcc---EEEeccccCCeEEEEEeCCCCEEEEEeCCCcEE
Q 014934 242 RVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDF---VSKLSGHKSEVCGLKWSYDNRELASGGNDNRLF 316 (415)
Q Consensus 242 ~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~---~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~ 316 (415)
+...+..+...++++.|+ .+.|++|+..+.|.+|-.+..+.- .+.-+.+...|.++.|+|++-+||+|+.|+.++
T Consensus 92 ptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~r 171 (361)
T KOG1523|consen 92 PTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCR 171 (361)
T ss_pred cceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCccee
Confidence 455566789999999999 489999999999999988766532 223346778899999999999999999999999
Q ss_pred EEECC-----C-------------CceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCc-EEEEee-C
Q 014934 317 VWNQH-----S-------------TQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNT-HLSCMD-T 376 (415)
Q Consensus 317 iwd~~-----~-------------~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~-~~~~~~-~ 376 (415)
||..- . |+.+.++....+.|..+.|+|.|..|.-.+ .|..+.+-|..... .+..+. .
T Consensus 172 VfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~---Hds~v~~~da~~p~~~v~~~~~~ 248 (361)
T KOG1523|consen 172 VFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVG---HDSTVSFVDAAGPSERVQSVATA 248 (361)
T ss_pred EEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEec---CCCceEEeecCCCchhccchhhc
Confidence 99741 1 123444445667899999999998555544 79999999987654 334433 2
Q ss_pred CCCEEEEEECCCCCeEEE
Q 014934 377 GSQVCNLVWSKNVNELVS 394 (415)
Q Consensus 377 ~~~V~~l~~s~~~~~l~s 394 (415)
.-+..++.|-.+...+++
T Consensus 249 ~lP~ls~~~ise~~vv~a 266 (361)
T KOG1523|consen 249 QLPLLSVSWISENSVVAA 266 (361)
T ss_pred cCCceeeEeecCCceeec
Confidence 245667777666655544
No 201
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.61 E-value=5.6e-14 Score=129.99 Aligned_cols=211 Identities=15% Similarity=0.210 Sum_probs=169.2
Q ss_pred cCCCcEEEEEcCCeEEEEECCCCC-----eEEeEecCCCCCeEEEEEcCCC-CeEEEEECC--CcEEEEECCCCeeeEEe
Q 014934 175 WSSHNVLAVGLGNCVYLWNACSSK-----VTKLCDLGIDDSVCSVGWANRN-THLAVGTSH--GKVQIWDASRCKRVRTM 246 (415)
Q Consensus 175 ws~~~~la~~~d~~V~iwd~~~~~-----~~~~~~~~~~~~V~~v~~sp~g-~~la~g~~d--g~V~iwd~~~~~~~~~l 246 (415)
...+.++++-.+|.+.+|....+. ...+. ....+..+.-++.. ..+|+|+.. ..+.|||+++.+.+-.-
T Consensus 113 ~~dg~Litc~~sG~l~~~~~k~~d~hss~l~~la---~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~a 189 (412)
T KOG3881|consen 113 LADGTLITCVSSGNLQVRHDKSGDLHSSKLIKLA---TGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSA 189 (412)
T ss_pred hcCCEEEEEecCCcEEEEeccCCccccccceeee---cCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeec
Confidence 334556666678999999988443 33332 23677778777754 456668888 78999999988555433
Q ss_pred cCC---------CccEEEEEee----CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCC
Q 014934 247 EGH---------RLRVGALAWS----SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDN 313 (415)
Q Consensus 247 ~~h---------~~~V~~l~~~----~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg 313 (415)
+.- .-.++++.|- +..|++++.-+.+++||.+.+..++..+.--..+|+++...|+++++++|..-+
T Consensus 190 KNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g 269 (412)
T KOG3881|consen 190 KNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKG 269 (412)
T ss_pred cCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccc
Confidence 211 1234455564 368999999999999999999888988888888999999999999999999999
Q ss_pred cEEEEECCCCceeEE-eccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCe
Q 014934 314 RLFVWNQHSTQPVLK-YCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNE 391 (415)
Q Consensus 314 ~I~iwd~~~~~~~~~-~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~ 391 (415)
.+..||++.++.+.. +.+-.+.|.+|..+|..+ +++++| .|+.+||+|+.+.+++..+..++.++++.+.++-+.
T Consensus 270 ~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~-~las~G--LDRyvRIhD~ktrkll~kvYvKs~lt~il~~~~~n~ 345 (412)
T KOG3881|consen 270 QLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHP-VLASCG--LDRYVRIHDIKTRKLLHKVYVKSRLTFILLRDDVNI 345 (412)
T ss_pred hhheecccCceeeccccCCccCCcceEEEcCCCc-eEEeec--cceeEEEeecccchhhhhhhhhccccEEEecCCccc
Confidence 999999999988766 888999999999999876 888887 999999999999998888888899999988776443
No 202
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.61 E-value=2.4e-15 Score=141.60 Aligned_cols=228 Identities=19% Similarity=0.314 Sum_probs=187.6
Q ss_pred CcceeEeecCC-Cc-EEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeE
Q 014934 167 DFYLNLVDWSS-HN-VLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVR 244 (415)
Q Consensus 167 ~~~i~~l~ws~-~~-~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~ 244 (415)
+|.-..++++. +. +|+.|..|.|..+|..++++...+. -...|.++.|-.+.+++|++ ....+.|||- .|..++
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~--v~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~-~GtElH 204 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN--VMETVRDVTFLHNEQFFAVA-QKKYVYVYDN-NGTELH 204 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccceeeeeee--hhhhhhhhhhhcchHHHHhh-hhceEEEecC-CCcEEe
Confidence 34455677776 55 4555567999999999998876664 45789999999999999986 5568999995 467778
Q ss_pred EecCCCccEEEEEeeC--CEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCC
Q 014934 245 TMEGHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHS 322 (415)
Q Consensus 245 ~l~~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~ 322 (415)
.++.| ..|..+.|-| -+|++++..|.+..-|+..+. .+..+..-.+.+..++-+|-...+-+|...|+|.+|....
T Consensus 205 Clk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~Gk-lVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~s 282 (545)
T KOG1272|consen 205 CLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGK-LVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNS 282 (545)
T ss_pred ehhhc-CchhhhcccchhheeeecccCCceEEEeechhh-hhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCC
Confidence 88765 4588899986 467788899999999999987 5667777778899999999999999999999999999999
Q ss_pred CceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEEEEecCCCc
Q 014934 323 TQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQ 402 (415)
Q Consensus 323 ~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~dg~ 402 (415)
.+++.++-.|.++|.+|++.+.|. ++++.| .|+.++|||+++-..+.++.+......+++|..|. |+. |. ...
T Consensus 283 kePLvKiLcH~g~V~siAv~~~G~-YMaTtG--~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~Sqkgl-LA~--~~-G~~ 355 (545)
T KOG1272|consen 283 KEPLVKILCHRGPVSSIAVDRGGR-YMATTG--LDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKGL-LAL--SY-GDH 355 (545)
T ss_pred cchHHHHHhcCCCcceEEECCCCc-EEeecc--cccceeEeeeccccccceeecCCCccccccccccc-eee--ec-CCe
Confidence 999999999999999999999998 555555 89999999999998888888888889999998885 444 22 237
Q ss_pred EEEEE
Q 014934 403 IIVWR 407 (415)
Q Consensus 403 I~vw~ 407 (415)
+.||.
T Consensus 356 v~iw~ 360 (545)
T KOG1272|consen 356 VQIWK 360 (545)
T ss_pred eeeeh
Confidence 88886
No 203
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=2.2e-13 Score=137.45 Aligned_cols=234 Identities=20% Similarity=0.259 Sum_probs=172.5
Q ss_pred eecCC-CcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCC---CeEEEEECCCcEEEEECCCCeeeEEecC
Q 014934 173 VDWSS-HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRN---THLAVGTSHGKVQIWDASRCKRVRTMEG 248 (415)
Q Consensus 173 l~ws~-~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g---~~la~g~~dg~V~iwd~~~~~~~~~l~~ 248 (415)
-.||+ +..+.+..+..|.||...+++++..+. +|...++++.+.|.. .++.+++.+|.|++||...+..++++..
T Consensus 22 avfSnD~k~l~~~~~~~V~VyS~~Tg~~i~~l~-~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~ 100 (792)
T KOG1963|consen 22 AVFSNDAKFLFLCTGNFVKVYSTATGECITSLE-DHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDN 100 (792)
T ss_pred cccccCCcEEEEeeCCEEEEEecchHhhhhhcc-cccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEec
Confidence 34666 677888889999999999999988776 889999999998854 4778999999999999988887777653
Q ss_pred CCccEEEEEe--------------eC--C--------------------------------------------EEEEEeC
Q 014934 249 HRLRVGALAW--------------SS--S--------------------------------------------LLSSGSR 268 (415)
Q Consensus 249 h~~~V~~l~~--------------~~--~--------------------------------------------~l~sgs~ 268 (415)
+.. +.++.+ .. . .+.....
T Consensus 101 ~~~-v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~ 179 (792)
T KOG1963|consen 101 NLP-VHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVH 179 (792)
T ss_pred CCc-eeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEE
Confidence 211 111111 00 0 1111122
Q ss_pred CCcEEEEECCCCCccEE---EeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCC----CceeEEeccCCCcEEEEEE
Q 014934 269 DKSILQRDIRAQEDFVS---KLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHS----TQPVLKYCEHTAAVKAIAW 341 (415)
Q Consensus 269 dg~I~iwd~~~~~~~~~---~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~----~~~~~~~~~h~~~V~~l~~ 341 (415)
+..+.+|++........ .-..|...+++.++||.++++|+|..||+|.+|.--. ......+.-|...|.+++|
T Consensus 180 ~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~f 259 (792)
T KOG1963|consen 180 MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSF 259 (792)
T ss_pred eeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEE
Confidence 33355666554331110 1124666689999999999999999999999997433 1234556679999999999
Q ss_pred cCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCCcc
Q 014934 342 SPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSK 413 (415)
Q Consensus 342 sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~~ 413 (415)
+++|. .|.+|| ..+.+.+|.+.+++...--.-++.|..+.++||+...+.. ..|++|.+-..++|+.
T Consensus 260 S~~G~-~LlSGG--~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~--~~DNqI~li~~~dl~~ 326 (792)
T KOG1963|consen 260 SSDGA-YLLSGG--REGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLV--LEDNQIHLIKASDLEI 326 (792)
T ss_pred ecCCc-eEeecc--cceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEE--ecCceEEEEeccchhh
Confidence 99998 555665 8999999999999843333478999999999999988874 4699999999988753
No 204
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.60 E-value=5.6e-13 Score=133.36 Aligned_cols=216 Identities=13% Similarity=0.131 Sum_probs=149.4
Q ss_pred eEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECC---CcEEEEECCCCeeeEEecCCCccEEEEEee--CCE
Q 014934 188 CVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSH---GKVQIWDASRCKRVRTMEGHRLRVGALAWS--SSL 262 (415)
Q Consensus 188 ~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~d---g~V~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~ 262 (415)
.|++||........+. .+...+.+..|+|||+.|+.++.. ..|.+||+.+++... +..+.+...+..|+ ++.
T Consensus 185 ~l~i~D~~g~~~~~lt--~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~ 261 (433)
T PRK04922 185 ALQVADSDGYNPQTIL--RSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRR 261 (433)
T ss_pred EEEEECCCCCCceEee--cCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCE
Confidence 6999998766655544 456789999999999999988743 369999998776433 33344455678888 444
Q ss_pred E-EEEeCCC--cEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeC-CC--cEEEEECCCCceeEEeccCCCcE
Q 014934 263 L-SSGSRDK--SILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGN-DN--RLFVWNQHSTQPVLKYCEHTAAV 336 (415)
Q Consensus 263 l-~sgs~dg--~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~-dg--~I~iwd~~~~~~~~~~~~h~~~V 336 (415)
| ++.+.+| .|++||+.++. ...+..+.......+|+|||+.|+.++. +| .|+++|+.+++.. .+..+....
T Consensus 262 l~~~~s~~g~~~Iy~~d~~~g~--~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~-~lt~~g~~~ 338 (433)
T PRK04922 262 LALTLSRDGNPEIYVMDLGSRQ--LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAE-RLTFQGNYN 338 (433)
T ss_pred EEEEEeCCCCceEEEEECCCCC--eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeE-EeecCCCCc
Confidence 4 4556666 59999998775 4455556555678899999999887764 34 4788888776543 333333445
Q ss_pred EEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEEEEec-CCCcEEEEECCC
Q 014934 337 KAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGY-SQNQIIVWRYPT 410 (415)
Q Consensus 337 ~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~-~dg~I~vw~~~s 410 (415)
..++|+|+|+.++++........|.+||+.+++.. .+..+.......|+|+|+.|+.+... ..+.|.+++...
T Consensus 339 ~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g 412 (433)
T PRK04922 339 ARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTPGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDG 412 (433)
T ss_pred cCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCCCCCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 57899999997777653112236999999888765 44344345678999999998875321 234677887754
No 205
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.60 E-value=3.2e-14 Score=136.07 Aligned_cols=216 Identities=15% Similarity=0.312 Sum_probs=163.2
Q ss_pred eEeecCC-CcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcC-------CCCeEEEEECCCcEEEEECCCCee
Q 014934 171 NLVDWSS-HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWAN-------RNTHLAVGTSHGKVQIWDASRCKR 242 (415)
Q Consensus 171 ~~l~ws~-~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp-------~g~~la~g~~dg~V~iwd~~~~~~ 242 (415)
.|++|+. ..++.++.|..+.+|+..+.+.............+.+-.-+ ....|++++.||.+.|.+ +.++.
T Consensus 18 c~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il~-k~~rV 96 (737)
T KOG1524|consen 18 CCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVILN-KSARV 96 (737)
T ss_pred EeecccccceEEEeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEec-ccchh
Confidence 4889988 67777777887777765554444444333333333332222 124788999999999987 45677
Q ss_pred eEEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEEC
Q 014934 243 VRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQ 320 (415)
Q Consensus 243 ~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~ 320 (415)
-+.+..|.+.+.+-.|+ |.-|++++.||.|++|.-...- ..++......|.|++|.|+.+-++-+. .+.+.|=.+
T Consensus 97 E~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGML--RStl~Q~~~~v~c~~W~p~S~~vl~c~-g~h~~IKpL 173 (737)
T KOG1524|consen 97 ERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGML--RSTVVQNEESIRCARWAPNSNSIVFCQ-GGHISIKPL 173 (737)
T ss_pred hhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchH--HHHHhhcCceeEEEEECCCCCceEEec-CCeEEEeec
Confidence 77888999999999999 5789999999999999865432 334444567899999999888776654 356777777
Q ss_pred CCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEE
Q 014934 321 HSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELV 393 (415)
Q Consensus 321 ~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~ 393 (415)
.....+.+.+.|.+-|.++.|++... ++++|| +|-..++||.....+...-.+..+|++++|.|+..+++
T Consensus 174 ~~n~k~i~WkAHDGiiL~~~W~~~s~-lI~sgG--ED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd~~~~v 243 (737)
T KOG1524|consen 174 AANSKIIRWRAHDGLVLSLSWSTQSN-IIASGG--EDFRFKIWDAQGANLFTSAAEEYAITSVAFNPEKDYLL 243 (737)
T ss_pred ccccceeEEeccCcEEEEeecCcccc-ceeecC--CceeEEeecccCcccccCChhccceeeeeeccccceee
Confidence 77777788899999999999999876 999998 99999999987666666666889999999999944444
No 206
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.60 E-value=8.9e-13 Score=131.53 Aligned_cols=214 Identities=13% Similarity=0.074 Sum_probs=146.6
Q ss_pred eEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEEC---CCcEEEEECCCCeeeEEecCCCccEEEEEee--CCE
Q 014934 188 CVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTS---HGKVQIWDASRCKRVRTMEGHRLRVGALAWS--SSL 262 (415)
Q Consensus 188 ~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~---dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~ 262 (415)
.|++||........+. .+...+.+.+|+|||+.||..+. +..|.+||+.+++... +....+.+..+.|+ ++.
T Consensus 180 ~l~~~d~dg~~~~~lt--~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~ 256 (429)
T PRK03629 180 ELRVSDYDGYNQFVVH--RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSK 256 (429)
T ss_pred eEEEEcCCCCCCEEee--cCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCE
Confidence 7999998877665554 34578999999999999987643 3469999998775332 22233334567888 455
Q ss_pred EEE-EeCCC--cEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCC-C--cEEEEECCCCceeEEeccCCCcE
Q 014934 263 LSS-GSRDK--SILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGND-N--RLFVWNQHSTQPVLKYCEHTAAV 336 (415)
Q Consensus 263 l~s-gs~dg--~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~d-g--~I~iwd~~~~~~~~~~~~h~~~V 336 (415)
|+. .+.+| .|++||+.++. ...+..+...+....|+|||+.|+..+.+ + .|+++|+.+++. ..+..+....
T Consensus 257 La~~~~~~g~~~I~~~d~~tg~--~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~~~~ 333 (429)
T PRK03629 257 LAFALSKTGSLNLYVMDLASGQ--IRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRITWEGSQN 333 (429)
T ss_pred EEEEEcCCCCcEEEEEECCCCC--EEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEeecCCCCc
Confidence 554 45555 48999998765 34455555678889999999998877654 3 566668776654 3444444556
Q ss_pred EEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEEEEecCCC---cEEEEECCC
Q 014934 337 KAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQN---QIIVWRYPT 410 (415)
Q Consensus 337 ~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~dg---~I~vw~~~s 410 (415)
....|+|+|+.++.++.......|.+||+.+++.. .+..........|+|||+.|+.+. .++ .+.++++..
T Consensus 334 ~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~~~~~~p~~SpDG~~i~~~s--~~~~~~~l~~~~~~G 407 (429)
T PRK03629 334 QDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDTFLDETPSIAPNGTMVIYSS--SQGMGSVLNLVSTDG 407 (429)
T ss_pred cCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCCCCCCCceECCCCCEEEEEE--cCCCceEEEEEECCC
Confidence 67899999997776654222356899999988754 333333345688999999998853 333 477777653
No 207
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=1.2e-13 Score=127.66 Aligned_cols=159 Identities=14% Similarity=0.253 Sum_probs=130.1
Q ss_pred CCCCCeEEEEEcCCCCeEEEEECCCcEEEEECC------CCeeeEEec-CCCccEEEEEee--CCEEEEEeCCCcEEEEE
Q 014934 206 GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDAS------RCKRVRTME-GHRLRVGALAWS--SSLLSSGSRDKSILQRD 276 (415)
Q Consensus 206 ~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~------~~~~~~~l~-~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd 276 (415)
+|.+.|.++.|+.++++||+|+.|..+++|++. +.+++..+. .|...|.|++|+ ..++++|+++++|...|
T Consensus 54 ~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HD 133 (609)
T KOG4227|consen 54 EHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHD 133 (609)
T ss_pred hhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeee
Confidence 789999999999999999999999999999985 345665554 356899999999 57899999999999999
Q ss_pred CCCCCccEEEec--cccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCc-e--eEEeccCCCcEEEEEEcCCCCcEEEE
Q 014934 277 IRAQEDFVSKLS--GHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQ-P--VLKYCEHTAAVKAIAWSPHLHGLLAS 351 (415)
Q Consensus 277 ~~~~~~~~~~~~--~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~-~--~~~~~~h~~~V~~l~~sp~~~~llas 351 (415)
+.+.+. +..+. ...+.|..+..+|..+.|++.+.++.|.+||.+... + +............+-|+|....||++
T Consensus 134 iEt~qs-i~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~ 212 (609)
T KOG4227|consen 134 IETKQS-IYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILV 212 (609)
T ss_pred ccccee-eeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEe
Confidence 998873 33322 234589999999999999999999999999998654 2 22233445667889999999989998
Q ss_pred EcCCCCCeEEEEECCC
Q 014934 352 GGGTADRCIRFWNTTT 367 (415)
Q Consensus 352 ggg~~d~~I~iwd~~t 367 (415)
.+ ..+-+-+||.+.
T Consensus 213 ~~--~~~G~~~~D~R~ 226 (609)
T KOG4227|consen 213 NS--ETGGPNVFDRRM 226 (609)
T ss_pred cc--ccCCCCceeecc
Confidence 87 778889999863
No 208
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=3e-13 Score=125.02 Aligned_cols=235 Identities=17% Similarity=0.206 Sum_probs=171.5
Q ss_pred CcceeEeecCC-CcEEEEEcC-CeEEEEECCC------CCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECC
Q 014934 167 DFYLNLVDWSS-HNVLAVGLG-NCVYLWNACS------SKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDAS 238 (415)
Q Consensus 167 ~~~i~~l~ws~-~~~la~~~d-~~V~iwd~~~------~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~ 238 (415)
.-+||.+.|+. +.+|+.|.| -.+.+|++.. .+.+.+....|...|.|++|.....+|.+|..+|+|.+.|++
T Consensus 56 ~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiE 135 (609)
T KOG4227|consen 56 TGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIE 135 (609)
T ss_pred ccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecc
Confidence 34799999998 889998865 5899999753 355566655677999999999999999999999999999999
Q ss_pred CCeeeEEec--CCCccEEEEEeeC--CEEEEEeCCCcEEEEECCCCCccE--EEeccccCCeEEEEEeCC-CCEEEEEeC
Q 014934 239 RCKRVRTME--GHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQEDFV--SKLSGHKSEVCGLKWSYD-NRELASGGN 311 (415)
Q Consensus 239 ~~~~~~~l~--~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~--~~~~~h~~~V~~l~~spd-g~~lasg~~ 311 (415)
+.+.+..+. ...+.|..+..+| ++|++.+.+|.|.+||++...... ..+.........+.|+|. ..+|++.+.
T Consensus 136 t~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~ 215 (609)
T KOG4227|consen 136 TKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSE 215 (609)
T ss_pred cceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccc
Confidence 988777665 2345899998884 899999999999999999765322 223334556778888884 466778888
Q ss_pred CCcEEEEECCCCc--------------------------------------------------eeEEeccCC-------C
Q 014934 312 DNRLFVWNQHSTQ--------------------------------------------------PVLKYCEHT-------A 334 (415)
Q Consensus 312 dg~I~iwd~~~~~--------------------------------------------------~~~~~~~h~-------~ 334 (415)
.+-+.+||.+... ++.++ .|. .
T Consensus 216 ~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~-D~N~~GY~N~~ 294 (609)
T KOG4227|consen 216 TGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKS-DHNPNGYCNIK 294 (609)
T ss_pred cCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEec-cCCCCcceeee
Confidence 8888899875310 11111 122 1
Q ss_pred cEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCC----------c-------------EEEEe-eCCCCEEEEEECCCCC
Q 014934 335 AVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTN----------T-------------HLSCM-DTGSQVCNLVWSKNVN 390 (415)
Q Consensus 335 ~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~----------~-------------~~~~~-~~~~~V~~l~~s~~~~ 390 (415)
.+++++|.-+ +-+++|+ .+-.|++|.+... . .+..+ .|.+-+..+.|+++..
T Consensus 295 T~KS~~F~~D--~~v~tGS--D~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~ 370 (609)
T KOG4227|consen 295 TIKSMTFIDD--YTVATGS--DHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNN 370 (609)
T ss_pred eeeeeeeecc--eeeeccC--cccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcc
Confidence 3455666644 3577766 8889999988531 1 11112 2567788899999998
Q ss_pred eEEEEEecCCCcEEEEEC
Q 014934 391 ELVSTHGYSQNQIIVWRY 408 (415)
Q Consensus 391 ~l~s~~g~~dg~I~vw~~ 408 (415)
.|++ .+-.+.|+||.-
T Consensus 371 ~l~S--SGVE~~~KlWS~ 386 (609)
T KOG4227|consen 371 LLVS--SGVENSFKLWSD 386 (609)
T ss_pred eEec--cchhhheecccc
Confidence 8887 456789999963
No 209
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=4.4e-13 Score=135.26 Aligned_cols=237 Identities=18% Similarity=0.249 Sum_probs=163.5
Q ss_pred CcceeEeecCC-CcEEEEE-cCCeEEEEECCC--C-C-eEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCC
Q 014934 167 DFYLNLVDWSS-HNVLAVG-LGNCVYLWNACS--S-K-VTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRC 240 (415)
Q Consensus 167 ~~~i~~l~ws~-~~~la~~-~d~~V~iwd~~~--~-~-~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~ 240 (415)
.|.++|.++|| ++++|++ .||.|.+|.--. + . ...++. -|.+.|++++|+++|.+|.+|+..|.+.+|.+.++
T Consensus 205 tf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lH-WH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~ 283 (792)
T KOG1963|consen 205 TFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLH-WHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETG 283 (792)
T ss_pred cccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEE-ecccccceeEEecCCceEeecccceEEEEEeecCC
Confidence 44478999999 8899988 589999997544 1 1 122222 57789999999999999999999999999999998
Q ss_pred eeeEEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEec-----------cccCCeEEEEEeCCCCEEE
Q 014934 241 KRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLS-----------GHKSEVCGLKWSYDNRELA 307 (415)
Q Consensus 241 ~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-----------~h~~~V~~l~~spdg~~la 307 (415)
+ ..-+..-.+.|..+.++ +++.+....|..|.+....+... ...+. ...+-.+.++++|.-+.++
T Consensus 284 ~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~-k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~v 361 (792)
T KOG1963|consen 284 K-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEI-KSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLV 361 (792)
T ss_pred C-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhh-hhhccCccCCCccccccccccceeEEEcCCCCcee
Confidence 8 45566678899999998 57788888899998887643321 11111 1122345566666555555
Q ss_pred EEeCCCcEEEEECCCCceeEE-----------------------------------------------------------
Q 014934 308 SGGNDNRLFVWNQHSTQPVLK----------------------------------------------------------- 328 (415)
Q Consensus 308 sg~~dg~I~iwd~~~~~~~~~----------------------------------------------------------- 328 (415)
-.+..|.|.+||+-+.+.+.+
T Consensus 362 ln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~ 441 (792)
T KOG1963|consen 362 LNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNS 441 (792)
T ss_pred ecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCc
Confidence 556666666666533111110
Q ss_pred ---------eccCCCcEEEEEEcCCCCc-EEEEEcCCCCCeEEEEECCCCcEEE---------Ee--eCCCCEEEEEECC
Q 014934 329 ---------YCEHTAAVKAIAWSPHLHG-LLASGGGTADRCIRFWNTTTNTHLS---------CM--DTGSQVCNLVWSK 387 (415)
Q Consensus 329 ---------~~~h~~~V~~l~~sp~~~~-llasggg~~d~~I~iwd~~t~~~~~---------~~--~~~~~V~~l~~s~ 387 (415)
...|...+.+.++.+-.+. ..++++ .||.++||-+...+.+. .+ -+..++.+++|+.
T Consensus 442 kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~--~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~ 519 (792)
T KOG1963|consen 442 KTFILNTKINNPHGNAFVATIFLNPTRSVRCVTAS--VDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQ 519 (792)
T ss_pred ceeEEEEEEecCCCceeEEEEEecCcccceeEEec--cCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcC
Confidence 1246666666665544333 666766 89999999884332111 11 1578899999999
Q ss_pred CCCeEEEEEecCCCcEEEEECCCC
Q 014934 388 NVNELVSTHGYSQNQIIVWRYPTM 411 (415)
Q Consensus 388 ~~~~l~s~~g~~dg~I~vw~~~s~ 411 (415)
||..|++ | .++.|.+||+.+.
T Consensus 520 dGslla~--s-~~~~Itiwd~~~~ 540 (792)
T KOG1963|consen 520 DGSLLAV--S-FDDTITIWDYDTK 540 (792)
T ss_pred CCcEEEE--e-cCCEEEEecCCCh
Confidence 9988877 4 4679999999884
No 210
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.58 E-value=4.6e-14 Score=131.77 Aligned_cols=192 Identities=19% Similarity=0.228 Sum_probs=148.3
Q ss_pred EEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEec-
Q 014934 212 CSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLS- 288 (415)
Q Consensus 212 ~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~- 288 (415)
.+++|+.+|..|++|+.||.+|||+..+...+.....|.+.|.+|.|+ +.+|++-+.| ...||+++++.. +....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~-~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAA-LARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCch-hhhcCC
Confidence 889999999999999999999999988777777778899999999999 5799999999 899999999853 33222
Q ss_pred -cccCCeEEEEEeCCC-----CEEEEEeCCCcEEEEECCCCce-----eEEeccCCCcEEEEEEcCCCCcEEEEEcCCCC
Q 014934 289 -GHKSEVCGLKWSYDN-----RELASGGNDNRLFVWNQHSTQP-----VLKYCEHTAAVKAIAWSPHLHGLLASGGGTAD 357 (415)
Q Consensus 289 -~h~~~V~~l~~spdg-----~~lasg~~dg~I~iwd~~~~~~-----~~~~~~h~~~V~~l~~sp~~~~llasggg~~d 357 (415)
.-......+.|+.|+ .+++....-+.|..||+...+. ..+...-...|.+++.+++|+ ++|.|+ .|
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGk-f~AlGT--~d 302 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGK-FLALGT--MD 302 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCc-EEEEec--cC
Confidence 223346667788776 3334444456677777643221 122222345799999999998 777765 89
Q ss_pred CeEEEEECCCCcEEEEee--CCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCC
Q 014934 358 RCIRFWNTTTNTHLSCMD--TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPT 410 (415)
Q Consensus 358 ~~I~iwd~~t~~~~~~~~--~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s 410 (415)
|.|-|++..+.++++.+. |...|+.+.|+|+.++++++ +.++.+.|..++-
T Consensus 303 GsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~sv--Ss~~~~~v~~l~v 355 (398)
T KOG0771|consen 303 GSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASV--SSDNEAAVTKLAV 355 (398)
T ss_pred CcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCccccc--ccCCceeEEEEee
Confidence 999999999999888776 77889999999999999984 4677777776654
No 211
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.57 E-value=1.5e-13 Score=137.16 Aligned_cols=208 Identities=15% Similarity=0.120 Sum_probs=143.2
Q ss_pred ceeEeecCC-CcEEEEEc-C---CeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEE-CCCcEEEE--ECCCC
Q 014934 169 YLNLVDWSS-HNVLAVGL-G---NCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGT-SHGKVQIW--DASRC 240 (415)
Q Consensus 169 ~i~~l~ws~-~~~la~~~-d---~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~-~dg~V~iw--d~~~~ 240 (415)
.+..+.|+| ++.|+... + ..|++||+.+++...+..+ .+...+++|+|||+.|+++. .+|.+.|| |+.++
T Consensus 205 ~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~--~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~ 282 (429)
T PRK01742 205 PLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASF--RGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGG 282 (429)
T ss_pred ccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecC--CCccCceeECCCCCEEEEEEecCCcEEEEEEECCCC
Confidence 466789999 66676653 2 3699999998876555432 23445789999999988875 68876665 55555
Q ss_pred eeeEEecCCCccEEEEEeeC--CEEE-EEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEE
Q 014934 241 KRVRTMEGHRLRVGALAWSS--SLLS-SGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFV 317 (415)
Q Consensus 241 ~~~~~l~~h~~~V~~l~~~~--~~l~-sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~i 317 (415)
+ ...+..+...+....|++ ..|+ ++..+|...+|++.........+ .+.. ....|+|||++|+.++.++ +.+
T Consensus 283 ~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~ 357 (429)
T PRK01742 283 T-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVMINGDN-VVK 357 (429)
T ss_pred C-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEEEcCCC-EEE
Confidence 4 455666777788899984 4444 55567888888775433223333 3433 4578999999999887765 667
Q ss_pred EECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEEC--CCCcEEEEee-CCCCEEEEEECCC
Q 014934 318 WNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNT--TTNTHLSCMD-TGSQVCNLVWSKN 388 (415)
Q Consensus 318 wd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~--~t~~~~~~~~-~~~~V~~l~~s~~ 388 (415)
||+.+++.......+ ....+.|+|+|+.++.++ .++.+.+|.+ .+|..+..+. +...+...+|+|-
T Consensus 358 ~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s---~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 358 QDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSS---TQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred EECCCCCeEEecCCC--CCCCceECCCCCEEEEEE---cCCCceEEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence 999888654332222 335688999998555554 4777777775 3577777775 4566888999985
No 212
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.57 E-value=3.9e-14 Score=135.62 Aligned_cols=163 Identities=21% Similarity=0.309 Sum_probs=125.6
Q ss_pred EEEEE-cCCeEEEEECCCCCeEEeEec---CCCCCeEEEEEcCCC-CeEEEEECCCcEEEEECCC--------------C
Q 014934 180 VLAVG-LGNCVYLWNACSSKVTKLCDL---GIDDSVCSVGWANRN-THLAVGTSHGKVQIWDASR--------------C 240 (415)
Q Consensus 180 ~la~~-~d~~V~iwd~~~~~~~~~~~~---~~~~~V~~v~~sp~g-~~la~g~~dg~V~iwd~~~--------------~ 240 (415)
-|.+| .-|.|++.+....++.+++.. -....|+|+.|-|.+ ..++++..+|.+.+||..- +
T Consensus 187 dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~ 266 (636)
T KOG2394|consen 187 DLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDG 266 (636)
T ss_pred ceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCC
Confidence 34455 458888888776555444432 124789999999954 4667778899999997521 1
Q ss_pred eeeEE--------------ecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCC
Q 014934 241 KRVRT--------------MEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNR 304 (415)
Q Consensus 241 ~~~~~--------------l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~ 304 (415)
..... +.-..+.|...+|+ +.+|++.+.||.++|+|..+.+ ++..++..-+...|++|||||+
T Consensus 267 ~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~e-Llg~mkSYFGGLLCvcWSPDGK 345 (636)
T KOG2394|consen 267 DQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQE-LLGVMKSYFGGLLCVCWSPDGK 345 (636)
T ss_pred CeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHH-HHHHHHhhccceEEEEEcCCcc
Confidence 11111 11123466777777 5899999999999999998876 5666666777899999999999
Q ss_pred EEEEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcC
Q 014934 305 ELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSP 343 (415)
Q Consensus 305 ~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp 343 (415)
+|++|++|..|.||.+...+.+..-++|+..|..|+|.|
T Consensus 346 yIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 346 YIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred EEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 999999999999999999999999999999999999984
No 213
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.57 E-value=4.7e-12 Score=123.21 Aligned_cols=238 Identities=14% Similarity=0.135 Sum_probs=157.8
Q ss_pred EeecCC-CcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEE-CCCcEEEEECCCCeeeEEecC
Q 014934 172 LVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGT-SHGKVQIWDASRCKRVRTMEG 248 (415)
Q Consensus 172 ~l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~-~dg~V~iwd~~~~~~~~~l~~ 248 (415)
.+.+++ ++++.++ .|+.|.++|+.+.+++..+..+ ....++++++||++++++. ..+.|.++|.++.+.++.+..
T Consensus 41 ~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G--~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~ 118 (369)
T PF02239_consen 41 GLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG--GNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPT 118 (369)
T ss_dssp EEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S--SEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE-
T ss_pred EEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC--CCcceEEEcCCCCEEEEEecCCCceeEeccccccceeeccc
Confidence 456777 5555444 6899999999999998888654 5679999999999999876 588999999999998887753
Q ss_pred C-------CccEEEEEee--CC-EEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEE-eCCCcEEE
Q 014934 249 H-------RLRVGALAWS--SS-LLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASG-GNDNRLFV 317 (415)
Q Consensus 249 h-------~~~V~~l~~~--~~-~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg-~~dg~I~i 317 (415)
. ..++.++..+ .. ++++--..+.|.+.|......................|+|++++|+++ ..++.|-+
T Consensus 119 ~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~v 198 (369)
T PF02239_consen 119 GGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAV 198 (369)
T ss_dssp -EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEE
T ss_pred ccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEE
Confidence 2 3467777655 23 444555558898889877654333333345567789999999987664 55678888
Q ss_pred EECCCCceeEEe-------------------------------------------------------ccCCCcEEEEEEc
Q 014934 318 WNQHSTQPVLKY-------------------------------------------------------CEHTAAVKAIAWS 342 (415)
Q Consensus 318 wd~~~~~~~~~~-------------------------------------------------------~~h~~~V~~l~~s 342 (415)
+|.++++.+..+ ...... .-+..+
T Consensus 199 iD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~th 277 (369)
T PF02239_consen 199 IDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTH 277 (369)
T ss_dssp EETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--
T ss_pred EeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecC
Confidence 998775433221 111112 346678
Q ss_pred CCCCcEEEE---EcCCCCCeEEEEECCCCcEEEEeeCC--CCEEEEEECCCCCeEEEEEecCCCcEEEEECCCCccc
Q 014934 343 PHLHGLLAS---GGGTADRCIRFWNTTTNTHLSCMDTG--SQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKV 414 (415)
Q Consensus 343 p~~~~llas---ggg~~d~~I~iwd~~t~~~~~~~~~~--~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~~l 414 (415)
|+++++.+. +. ..+.|.++|..+.+.+..+..+ ..+..+.|+++|+++..+....++.|.|||..+++.+
T Consensus 278 P~s~~vwvd~~~~~--~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~ 352 (369)
T PF02239_consen 278 PDSRYVWVDTFLNP--DADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEK 352 (369)
T ss_dssp TT-SEEEEE-TT-S--SHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEE
T ss_pred CCCccEEeeccCCC--CCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEE
Confidence 999988887 33 5789999999999888887643 3499999999999998876656669999999998753
No 214
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.56 E-value=2.6e-13 Score=132.73 Aligned_cols=191 Identities=18% Similarity=0.325 Sum_probs=146.3
Q ss_pred CeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCc-----
Q 014934 210 SVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQED----- 282 (415)
Q Consensus 210 ~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~----- 282 (415)
.|..++|-|||..|+.+..+ .+.+||...|..+.++++|...|.|++|+ |..+++|+.|+.|.+|...-...
T Consensus 14 ci~d~afkPDGsqL~lAAg~-rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH 92 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGS-RLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSH 92 (1081)
T ss_pred chheeEECCCCceEEEecCC-EEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceeeecc
Confidence 79999999999988886544 79999999999999999999999999998 79999999999999998653220
Q ss_pred --cEEE---------------------------ec--cccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEec-
Q 014934 283 --FVSK---------------------------LS--GHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYC- 330 (415)
Q Consensus 283 --~~~~---------------------------~~--~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~- 330 (415)
.++- .. .....|++.+|..||++||.|-.||+|.|-+. ++++...++
T Consensus 93 ~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk-~gEek~~I~R 171 (1081)
T KOG1538|consen 93 NDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNK-NGEEKVKIER 171 (1081)
T ss_pred CCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecC-CCCcceEEeC
Confidence 0000 00 11235788899999999999999999999864 444433443
Q ss_pred --cCCCcEEEEEEcCCCC----cEEEEEcCCCCCeEEEEECCCCcEEE-EeeCCCCEEEEEECCCCCeEEEEEecCCCcE
Q 014934 331 --EHTAAVKAIAWSPHLH----GLLASGGGTADRCIRFWNTTTNTHLS-CMDTGSQVCNLVWSKNVNELVSTHGYSQNQI 403 (415)
Q Consensus 331 --~h~~~V~~l~~sp~~~----~llasggg~~d~~I~iwd~~t~~~~~-~~~~~~~V~~l~~s~~~~~l~s~~g~~dg~I 403 (415)
+.+.+|.+++|+|... .+++... ...++.++.+. |+.+. .-.-+-..+++.+.++|.+++. |++|+.+
T Consensus 172 pgg~Nspiwsi~~~p~sg~G~~di~aV~D--W~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~Li--GGsdk~L 246 (1081)
T KOG1538|consen 172 PGGSNSPIWSICWNPSSGEGRNDILAVAD--WGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYILL--GGSDKQL 246 (1081)
T ss_pred CCCCCCCceEEEecCCCCCCccceEEEEe--ccceeEEEEec-ceeecccccCCCCchhheeccCCcEEEE--ccCCCce
Confidence 4788999999999743 2455554 56677777664 44443 2234556788999999999999 8899999
Q ss_pred EEEE
Q 014934 404 IVWR 407 (415)
Q Consensus 404 ~vw~ 407 (415)
++|-
T Consensus 247 ~~fT 250 (1081)
T KOG1538|consen 247 SLFT 250 (1081)
T ss_pred EEEe
Confidence 8875
No 215
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.56 E-value=4e-15 Score=140.04 Aligned_cols=215 Identities=17% Similarity=0.241 Sum_probs=173.1
Q ss_pred EeecCC-CcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEecCCC
Q 014934 172 LVDWSS-HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHR 250 (415)
Q Consensus 172 ~l~ws~-~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~ 250 (415)
.+.|-- .+++|++...-+||||-..-++.++- ....|..+.|-|---+|++++..|.+..-|+.+|+.+..+....
T Consensus 175 Dv~~LHneq~~AVAQK~y~yvYD~~GtElHClk---~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~ 251 (545)
T KOG1272|consen 175 DVTFLHNEQFFAVAQKKYVYVYDNNGTELHCLK---RHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGA 251 (545)
T ss_pred hhhhhcchHHHHhhhhceEEEecCCCcEEeehh---hcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccC
Confidence 344433 67899999999999997665554443 34789999999999999999999999999999999999998888
Q ss_pred ccEEEEEeeC--CEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEE
Q 014934 251 LRVGALAWSS--SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLK 328 (415)
Q Consensus 251 ~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~ 328 (415)
+++..|+-+| ..+-+|...|+|.+|.....+ ++..+..|.++|.+|++.++|+++||.|.|..|+|||++....+++
T Consensus 252 G~~~vm~qNP~NaVih~GhsnGtVSlWSP~ske-PLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t 330 (545)
T KOG1272|consen 252 GRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKE-PLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHT 330 (545)
T ss_pred CccchhhcCCccceEEEcCCCceEEecCCCCcc-hHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccce
Confidence 9999999985 578899999999999998887 5667788999999999999999999999999999999999877776
Q ss_pred eccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEE-CCCCc-----EEEEeeCCCCEEEEEECCCCCeEEEEE
Q 014934 329 YCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWN-TTTNT-----HLSCMDTGSQVCNLVWSKNVNELVSTH 396 (415)
Q Consensus 329 ~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd-~~t~~-----~~~~~~~~~~V~~l~~s~~~~~l~s~~ 396 (415)
+.. ......+++|.. .+||.+ ....+.||. ...+. +.-....+.+|..+.|.|-...|-.+|
T Consensus 331 ~~t-p~~a~~ls~Sqk--glLA~~---~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH 398 (545)
T KOG1272|consen 331 YRT-PHPASNLSLSQK--GLLALS---YGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGH 398 (545)
T ss_pred eec-CCCccccccccc--cceeee---cCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccc
Confidence 654 445677888855 477766 457899994 22211 111112456899999999988887744
No 216
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.55 E-value=6.7e-15 Score=146.96 Aligned_cols=201 Identities=19% Similarity=0.297 Sum_probs=155.7
Q ss_pred CCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCcc
Q 014934 206 GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDF 283 (415)
Q Consensus 206 ~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~ 283 (415)
+|...|.|+.|...|.++++|+.|..|+||.+++..++..+.||.+.|+.++.+ .-.+++++.|..|++|.+..+. +
T Consensus 188 gH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~-p 266 (1113)
T KOG0644|consen 188 GHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGA-P 266 (1113)
T ss_pred hhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCc-h
Confidence 888999999999999999999999999999999999999999999999999998 4578899999999999999987 6
Q ss_pred EEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCC--------------ceeEEe--c--------c------CC
Q 014934 284 VSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHST--------------QPVLKY--C--------E------HT 333 (415)
Q Consensus 284 ~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~--------------~~~~~~--~--------~------h~ 333 (415)
+..+.+|.+.|++++|+|-. +.+.||++++||.+-. ..+..+ . + ..
T Consensus 267 vsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n 342 (1113)
T KOG0644|consen 267 VSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARN 342 (1113)
T ss_pred HHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCccccc
Confidence 88999999999999999954 7789999999998710 000000 0 0 00
Q ss_pred CcEEEEEEcCCCCcEEEEEcC---------CCCCeEEEEECCCCcEEEEee-CCCCEEEEEECCCCCeEEEEEecCCCcE
Q 014934 334 AAVKAIAWSPHLHGLLASGGG---------TADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKNVNELVSTHGYSQNQI 403 (415)
Q Consensus 334 ~~V~~l~~sp~~~~llasggg---------~~d~~I~iwd~~t~~~~~~~~-~~~~V~~l~~s~~~~~l~s~~g~~dg~I 403 (415)
...-.++|.... .+++++.+ -.+..+++|++.+|..++... +...+..+.++|-+..++-+.| -||..
T Consensus 343 ~e~~~l~~~~~~-lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag-~dgst 420 (1113)
T KOG0644|consen 343 HEFEQLAWRSNL-LIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAG-YDGST 420 (1113)
T ss_pred chhhHhhhhccc-eEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhcc-CCCce
Confidence 011122332221 12222221 146678999999998877665 5677899999999888877644 68999
Q ss_pred EEEECCCCcc
Q 014934 404 IVWRYPTMSK 413 (415)
Q Consensus 404 ~vw~~~s~~~ 413 (415)
.|||+-.+.+
T Consensus 421 ~iwdi~eg~p 430 (1113)
T KOG0644|consen 421 IIWDIWEGIP 430 (1113)
T ss_pred EeeecccCCc
Confidence 9999876543
No 217
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=9.2e-14 Score=129.78 Aligned_cols=191 Identities=16% Similarity=0.164 Sum_probs=138.2
Q ss_pred eEeecCC-CcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEecC
Q 014934 171 NLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEG 248 (415)
Q Consensus 171 ~~l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~ 248 (415)
-+++++. +..|+++ .||++++|+..+....... ..|...|.++.|+|||++|++-+.| ..+||+..++-.+.....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e-~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEE-IAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhh-HhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 4788888 5788877 6899999996655443322 3788999999999999999999999 899999999966655542
Q ss_pred --CCccEEEEEee--C---C--EEEEEeCCCcEEEEECCCCCc----cEEEeccccCCeEEEEEeCCCCEEEEEeCCCcE
Q 014934 249 --HRLRVGALAWS--S---S--LLSSGSRDKSILQRDIRAQED----FVSKLSGHKSEVCGLKWSYDNRELASGGNDNRL 315 (415)
Q Consensus 249 --h~~~V~~l~~~--~---~--~l~sgs~dg~I~iwd~~~~~~----~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I 315 (415)
-......+.|. + . +++.-..-+.|..||+..... ...+...-...|.+++.+++|+++|.|+.||.|
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsV 305 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSV 305 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcE
Confidence 22334445554 2 1 222333445666666543221 111222223469999999999999999999999
Q ss_pred EEEECCCCceeEEec-cCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECC
Q 014934 316 FVWNQHSTQPVLKYC-EHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTT 366 (415)
Q Consensus 316 ~iwd~~~~~~~~~~~-~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~ 366 (415)
.|++..+.+.++-.. .|...|+.+.|+|+.+++..+. .|..+.+..+.
T Consensus 306 ai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svS---s~~~~~v~~l~ 354 (398)
T KOG0771|consen 306 AIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVS---SDNEAAVTKLA 354 (398)
T ss_pred EEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccc---cCCceeEEEEe
Confidence 999999888776554 6999999999999988666544 46777766554
No 218
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.54 E-value=6.6e-14 Score=123.41 Aligned_cols=155 Identities=25% Similarity=0.386 Sum_probs=122.5
Q ss_pred CCCeEEEEEcC-CCC--eEEEEECCCcEEEEECCCCeee----------EEecCCCccEEEEEeeC--CEEEEEeCCCcE
Q 014934 208 DDSVCSVGWAN-RNT--HLAVGTSHGKVQIWDASRCKRV----------RTMEGHRLRVGALAWSS--SLLSSGSRDKSI 272 (415)
Q Consensus 208 ~~~V~~v~~sp-~g~--~la~g~~dg~V~iwd~~~~~~~----------~~l~~h~~~V~~l~~~~--~~l~sgs~dg~I 272 (415)
.+.+.|..|.. +++ +|++|..+|.|.+||+.++..+ .....|..+|.++.+.+ +.=++|+.+..+
T Consensus 150 lgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl 229 (323)
T KOG0322|consen 150 LGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKL 229 (323)
T ss_pred cCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccc
Confidence 46788887654 333 6778889999999999987333 33346899999999973 444677777888
Q ss_pred EEEECCCCCccE---EEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEE
Q 014934 273 LQRDIRAQEDFV---SKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLL 349 (415)
Q Consensus 273 ~iwd~~~~~~~~---~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll 349 (415)
..|.+....... ....-..-.|..+.+-||++.||++|.|++|+||+.++..++..++-|.+.|.+++|+|+.. ++
T Consensus 230 ~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~-lm 308 (323)
T KOG0322|consen 230 VMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCE-LM 308 (323)
T ss_pred eeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCc-hh
Confidence 888876542111 11122234688899999999999999999999999999999999999999999999999965 88
Q ss_pred EEEcCCCCCeEEEEEC
Q 014934 350 ASGGGTADRCIRFWNT 365 (415)
Q Consensus 350 asggg~~d~~I~iwd~ 365 (415)
|+++ .|..|.+|++
T Consensus 309 Aaas--kD~rISLWkL 322 (323)
T KOG0322|consen 309 AAAS--KDARISLWKL 322 (323)
T ss_pred hhcc--CCceEEeeec
Confidence 8887 9999999986
No 219
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.54 E-value=2.3e-12 Score=133.95 Aligned_cols=257 Identities=18% Similarity=0.190 Sum_probs=174.1
Q ss_pred CCceeccCCCCCCCcceeEeecCC--CcEEEEE-cCCeEEEEECCCCC-----eEEeEec-CCCCCeEEEEEcCCCCeEE
Q 014934 154 SPYKILDAPALQDDFYLNLVDWSS--HNVLAVG-LGNCVYLWNACSSK-----VTKLCDL-GIDDSVCSVGWANRNTHLA 224 (415)
Q Consensus 154 ~p~~~ld~~~l~~~~~i~~l~ws~--~~~la~~-~d~~V~iwd~~~~~-----~~~~~~~-~~~~~V~~v~~sp~g~~la 224 (415)
.|..++=|+-....-.++.++-++ +.++++| .||+|++|+...-. ....+.. .....+.++...+.|+.+|
T Consensus 1035 ~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~A 1114 (1431)
T KOG1240|consen 1035 NPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFA 1114 (1431)
T ss_pred CccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEE
Confidence 344455554444445566777776 3677776 57999999986421 1122222 2467899999999999999
Q ss_pred EEECCCcEEEEECCCC-------eeeEEecCC-CccEE-EEEee---C-CEEEEEeCCCcEEEEECCCCCccE-EEeccc
Q 014934 225 VGTSHGKVQIWDASRC-------KRVRTMEGH-RLRVG-ALAWS---S-SLLSSGSRDKSILQRDIRAQEDFV-SKLSGH 290 (415)
Q Consensus 225 ~g~~dg~V~iwd~~~~-------~~~~~l~~h-~~~V~-~l~~~---~-~~l~sgs~dg~I~iwd~~~~~~~~-~~~~~h 290 (415)
+|+.||.|++.++... .+.+....+ .+.+. .-++. . ..|+.+...+.|..||++...... .+....
T Consensus 1115 v~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~ 1194 (1431)
T KOG1240|consen 1115 VSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLR 1194 (1431)
T ss_pred EEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcc
Confidence 9999999999998652 122222222 23333 33343 2 378888999999999999875321 122233
Q ss_pred cCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEec-cCCCcEEEEEEcCCCC--cEEEEEcCCCCCeEEEEECCC
Q 014934 291 KSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYC-EHTAAVKAIAWSPHLH--GLLASGGGTADRCIRFWNTTT 367 (415)
Q Consensus 291 ~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~-~h~~~V~~l~~sp~~~--~llasggg~~d~~I~iwd~~t 367 (415)
.+.|++++.+|.+++++.|...|.+.+||++=+.++..+. ++...+..+..+|-.+ ...++++-+..+.|.+|++.+
T Consensus 1195 hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~ 1274 (1431)
T KOG1240|consen 1195 HGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMET 1274 (1431)
T ss_pred ccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeeccc
Confidence 4679999999999999999999999999999888887664 4567888888887654 455555433678899999999
Q ss_pred CcEEEEeeCCCC------------------E--EEEEECCCCCeEEEEEecCCCcEEEEECCCCc
Q 014934 368 NTHLSCMDTGSQ------------------V--CNLVWSKNVNELVSTHGYSQNQIIVWRYPTMS 412 (415)
Q Consensus 368 ~~~~~~~~~~~~------------------V--~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~ 412 (415)
|.+...+-.... + ....+..-+..+++ |++|..|+.||...-+
T Consensus 1275 g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~lt--ggsd~kIR~wD~~~p~ 1337 (1431)
T KOG1240|consen 1275 GLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLT--GGSDMKIRKWDPTRPE 1337 (1431)
T ss_pred CcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeee--cCCccceeeccCCCcc
Confidence 976655532211 1 11222223344555 7789999999987643
No 220
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=3.2e-12 Score=127.54 Aligned_cols=216 Identities=13% Similarity=0.046 Sum_probs=139.7
Q ss_pred CeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECC---CcEEEEECCCCeeeEEecCCCccEEEEEeeC--C
Q 014934 187 NCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSH---GKVQIWDASRCKRVRTMEGHRLRVGALAWSS--S 261 (415)
Q Consensus 187 ~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~d---g~V~iwd~~~~~~~~~l~~h~~~V~~l~~~~--~ 261 (415)
..|+++|........+. .+...+.+.+|+|||+.|+..+.. ..|.+||+.+++... +....+.+.+.+|++ +
T Consensus 176 ~~L~~~D~dG~~~~~l~--~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~ 252 (427)
T PRK02889 176 YQLQISDADGQNAQSAL--SSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGR 252 (427)
T ss_pred cEEEEECCCCCCceEec--cCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCC
Confidence 46888887554444443 456789999999999999887653 359999998876543 333345566888984 4
Q ss_pred EE-EEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeC-CCcEEEE--ECCCCceeEEeccCCCcEE
Q 014934 262 LL-SSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGN-DNRLFVW--NQHSTQPVLKYCEHTAAVK 337 (415)
Q Consensus 262 ~l-~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~-dg~I~iw--d~~~~~~~~~~~~h~~~V~ 337 (415)
.| ++.+.+|...+|.+.........+..+...+....|+|||+.|+..++ ++...|| ++.+++. ..+..+.....
T Consensus 253 ~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~-~~lt~~g~~~~ 331 (427)
T PRK02889 253 TLAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA-QRVTFTGSYNT 331 (427)
T ss_pred EEEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce-EEEecCCCCcC
Confidence 55 466778876666543222224555556556677899999999887654 3554555 5555543 22222233345
Q ss_pred EEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEEEEecCCC--cEEEEEC
Q 014934 338 AIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQN--QIIVWRY 408 (415)
Q Consensus 338 ~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~dg--~I~vw~~ 408 (415)
..+|+|+|++++.++....+..|.+||+.+++... +..........|+|+|+.|+.+. ...| .+.+.+.
T Consensus 332 ~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~~~~~~~p~~spdg~~l~~~~-~~~g~~~l~~~~~ 402 (427)
T PRK02889 332 SPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTDTTRDESPSFAPNGRYILYAT-QQGGRSVLAAVSS 402 (427)
T ss_pred ceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccCCCCccCceECCCCCEEEEEE-ecCCCEEEEEEEC
Confidence 68999999977666531112379999999887543 33333456789999999998863 2333 3555454
No 221
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.52 E-value=1.7e-12 Score=115.05 Aligned_cols=157 Identities=18% Similarity=0.322 Sum_probs=111.0
Q ss_pred EEEEEcCCCCeEEEEEC----------CCcEEEEECCC-CeeeEEecC-CCccEEEEEeeC--CEEE--EEeCCCcEEEE
Q 014934 212 CSVGWANRNTHLAVGTS----------HGKVQIWDASR-CKRVRTMEG-HRLRVGALAWSS--SLLS--SGSRDKSILQR 275 (415)
Q Consensus 212 ~~v~~sp~g~~la~g~~----------dg~V~iwd~~~-~~~~~~l~~-h~~~V~~l~~~~--~~l~--sgs~dg~I~iw 275 (415)
..+.|+++|++|++-.. -|...||.++. ...+..+.- ..++|.+++|+| +.|+ .|..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 56789999987776543 13456666532 233444432 345799999994 4543 35567899999
Q ss_pred ECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCC---CcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEE
Q 014934 276 DIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGND---NRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASG 352 (415)
Q Consensus 276 d~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~d---g~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasg 352 (415)
|++. . .+..+ +...+..+.|+|+|++||+|+.+ |.|.+||.++.+.+.+++ |. .+..++|+|+|++++++.
T Consensus 89 d~~~-~-~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~~-~~t~~~WsPdGr~~~ta~ 162 (194)
T PF08662_consen 89 DVKG-K-KIFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-HS-DATDVEWSPDGRYLATAT 162 (194)
T ss_pred cCcc-c-EeEee--cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-cC-cEEEEEEcCCCCEEEEEE
Confidence 9972 2 34444 35678899999999999998754 569999999888887763 33 478999999999777665
Q ss_pred cC---CCCCeEEEEECCCCcEEEEee
Q 014934 353 GG---TADRCIRFWNTTTNTHLSCMD 375 (415)
Q Consensus 353 gg---~~d~~I~iwd~~t~~~~~~~~ 375 (415)
.- ..|..++||+.. |+.+....
T Consensus 163 t~~r~~~dng~~Iw~~~-G~~l~~~~ 187 (194)
T PF08662_consen 163 TSPRLRVDNGFKIWSFQ-GRLLYKKP 187 (194)
T ss_pred eccceeccccEEEEEec-CeEeEecc
Confidence 30 138899999984 77666543
No 222
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.52 E-value=7.3e-12 Score=113.36 Aligned_cols=173 Identities=14% Similarity=0.238 Sum_probs=130.2
Q ss_pred CeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECC-CCeeeEEecCC--CccEEEEEee-C-C
Q 014934 187 NCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDAS-RCKRVRTMEGH--RLRVGALAWS-S-S 261 (415)
Q Consensus 187 ~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~-~~~~~~~l~~h--~~~V~~l~~~-~-~ 261 (415)
++|.|||-...+.+..+ ....+|.+|.+.++ +|++.. .+.|.||... +.+.++.+..- ...+.+++-. . .
T Consensus 75 NkviIWDD~k~~~i~el--~f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~ 149 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIEL--SFNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKS 149 (346)
T ss_pred ceEEEEecccCcEEEEE--EeccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCce
Confidence 36999995555555444 45689999999755 566654 4589999987 45556555432 2334444443 2 3
Q ss_pred EEEE-EeCCCcEEEEECCCCCc-cEEEeccccCCeEEEEEeCCCCEEEEEeCCCc-EEEEECCCCceeEEecc--CCCcE
Q 014934 262 LLSS-GSRDKSILQRDIRAQED-FVSKLSGHKSEVCGLKWSYDNRELASGGNDNR-LFVWNQHSTQPVLKYCE--HTAAV 336 (415)
Q Consensus 262 ~l~s-gs~dg~I~iwd~~~~~~-~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~-I~iwd~~~~~~~~~~~~--h~~~V 336 (415)
+|+. |-.-|.|.+-|+..... ....+.+|...|.|++.+-+|.++||++..|+ |+|||..+++.++++.. ..+.|
T Consensus 150 ~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~i 229 (346)
T KOG2111|consen 150 LLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADI 229 (346)
T ss_pred EEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheE
Confidence 4443 45669999999987653 24678899999999999999999999999997 89999999999999863 45679
Q ss_pred EEEEEcCCCCcEEEEEcCCCCCeEEEEECCC
Q 014934 337 KAIAWSPHLHGLLASGGGTADRCIRFWNTTT 367 (415)
Q Consensus 337 ~~l~~sp~~~~llasggg~~d~~I~iwd~~t 367 (415)
.+++|+|+.. +||.++ ..|+|+||.++.
T Consensus 230 y~iaFSp~~s-~LavsS--dKgTlHiF~l~~ 257 (346)
T KOG2111|consen 230 YCIAFSPNSS-WLAVSS--DKGTLHIFSLRD 257 (346)
T ss_pred EEEEeCCCcc-EEEEEc--CCCeEEEEEeec
Confidence 9999999998 555555 799999998865
No 223
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.52 E-value=1.7e-12 Score=119.10 Aligned_cols=183 Identities=22% Similarity=0.348 Sum_probs=138.7
Q ss_pred CCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEec-CCCccEEEEEeeC---CEEEEEeCCCcEEEEECCCCCc-
Q 014934 208 DDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTME-GHRLRVGALAWSS---SLLSSGSRDKSILQRDIRAQED- 282 (415)
Q Consensus 208 ~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~-~h~~~V~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~- 282 (415)
+..+..++|++.-..+|++..|-.|++||-.. ++...++ ..+..|+|++|.| ..|+.|++.| |.+|.......
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~ 175 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNA 175 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCccccc
Confidence 35688899999878899999999999999776 5555554 2456799999984 6888888777 89997653221
Q ss_pred ------------cEEEeccccCCeEEEEEeCCCCEEEEEeC-CCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEE
Q 014934 283 ------------FVSKLSGHKSEVCGLKWSYDNRELASGGN-DNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLL 349 (415)
Q Consensus 283 ------------~~~~~~~h~~~V~~l~~spdg~~lasg~~-dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll 349 (415)
.+....+| ..|++|+|++||..|++++- |..|.|||..++..+.-....-+.+.-+.|+|++.+++
T Consensus 176 ~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lf 254 (445)
T KOG2139|consen 176 NRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLF 254 (445)
T ss_pred ccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEE
Confidence 11222344 67999999999999999874 56899999998866544434557788999999999888
Q ss_pred EEEcCCCCCeEEEEECC-CCcEEEEeeCCCCEEEEEECCCCCeEEEEE
Q 014934 350 ASGGGTADRCIRFWNTT-TNTHLSCMDTGSQVCNLVWSKNVNELVSTH 396 (415)
Q Consensus 350 asggg~~d~~I~iwd~~-t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~ 396 (415)
++. -|+..++|+.. +-....-+-....|...+|+|+|++|+.+.
T Consensus 255 aAt---~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~ 299 (445)
T KOG2139|consen 255 AAT---CDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFAC 299 (445)
T ss_pred Eec---ccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEE
Confidence 866 69999999654 333333333445899999999999988753
No 224
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=6.9e-12 Score=125.17 Aligned_cols=212 Identities=13% Similarity=0.117 Sum_probs=141.7
Q ss_pred ceeEeecCC-CcEEEEEc----CCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEE-ECCC--cEEEEECCCC
Q 014934 169 YLNLVDWSS-HNVLAVGL----GNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVG-TSHG--KVQIWDASRC 240 (415)
Q Consensus 169 ~i~~l~ws~-~~~la~~~----d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g-~~dg--~V~iwd~~~~ 240 (415)
.+....||| ++.|+... +..|++|++.+++...+..+ .+.+..+.|+|||+.|+.. ..+| .|.+||+.++
T Consensus 200 ~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~--~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg 277 (429)
T PRK03629 200 PLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASF--PRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASG 277 (429)
T ss_pred ceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCC--CCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCC
Confidence 467889999 66776542 34799999999887665532 3445678999999988865 3455 4888999887
Q ss_pred eeeEEecCCCccEEEEEee--CCEEEEEeC-CCc--EEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCC---
Q 014934 241 KRVRTMEGHRLRVGALAWS--SSLLSSGSR-DKS--ILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGND--- 312 (415)
Q Consensus 241 ~~~~~l~~h~~~V~~l~~~--~~~l~sgs~-dg~--I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~d--- 312 (415)
+... +..+...+....|+ ++.|+..+. ++. |+++|+..+. ...+..+........|+|||++|+..+.+
T Consensus 278 ~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~--~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~ 354 (429)
T PRK03629 278 QIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGA--PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQ 354 (429)
T ss_pred CEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCC--eEEeecCCCCccCEEECCCCCEEEEEEccCCC
Confidence 6544 44445567888998 456665554 444 5555666554 33444344456678999999999886543
Q ss_pred CcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee-CCCCEEEEEECCC
Q 014934 313 NRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKN 388 (415)
Q Consensus 313 g~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~-~~~~V~~l~~s~~ 388 (415)
..|++||+.+++.. .+... .......|+|+|+.++.++.......+.++++. |.....+. +...+...+|+|-
T Consensus 355 ~~I~~~dl~~g~~~-~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~-G~~~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 355 QHIAKQDLATGGVQ-VLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPY 428 (429)
T ss_pred ceEEEEECCCCCeE-EeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECC-CCCeEECccCCCCcCCcccCCC
Confidence 35889999887643 34322 233567899999977776641112347788884 44445454 4567888889873
No 225
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.49 E-value=7.6e-12 Score=125.20 Aligned_cols=211 Identities=12% Similarity=0.117 Sum_probs=142.1
Q ss_pred ceeEeecCC-CcEEEEEc----CCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEE-ECCC--cEEEEECCCC
Q 014934 169 YLNLVDWSS-HNVLAVGL----GNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVG-TSHG--KVQIWDASRC 240 (415)
Q Consensus 169 ~i~~l~ws~-~~~la~~~----d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g-~~dg--~V~iwd~~~~ 240 (415)
.+....|+| ++.|+... ...|++|++.+++...+.. ..+...++.|+|||+.|+.. +.+| .|.+||+.++
T Consensus 205 ~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~--~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g 282 (433)
T PRK04922 205 PILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVAS--FRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSR 282 (433)
T ss_pred ccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEecc--CCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCC
Confidence 356788999 66676653 2469999999888765543 34456688999999987654 4555 5999999887
Q ss_pred eeeEEecCCCccEEEEEee--CCEEEEEe-CCCc--EEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCC--
Q 014934 241 KRVRTMEGHRLRVGALAWS--SSLLSSGS-RDKS--ILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDN-- 313 (415)
Q Consensus 241 ~~~~~l~~h~~~V~~l~~~--~~~l~sgs-~dg~--I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg-- 313 (415)
+. ..+..+.......+|+ ++.|+.++ .+|. |+++|+..+. ...+..+......++|+|||++|+..+.++
T Consensus 283 ~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~--~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~ 359 (433)
T PRK04922 283 QL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGS--AERLTFQGNYNARASVSPDGKKIAMVHGSGGQ 359 (433)
T ss_pred Ce-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC--eEEeecCCCCccCEEECCCCCEEEEEECCCCc
Confidence 64 4455565556678888 45666555 4554 7777776654 233322333455789999999998765443
Q ss_pred -cEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee-CCCCEEEEEECC
Q 014934 314 -RLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSK 387 (415)
Q Consensus 314 -~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~-~~~~V~~l~~s~ 387 (415)
.|.+||+.+++.. .+. +........|+|+|+.++.+........|.++++..+ ....+. +...+...+|+|
T Consensus 360 ~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~-~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 360 YRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR-VRQRLVSADGEVREPAWSP 432 (433)
T ss_pred eeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC-ceEEcccCCCCCCCCccCC
Confidence 6999999887654 443 3334556799999997777664222456888888544 444443 345677778876
No 226
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.47 E-value=2.9e-11 Score=120.47 Aligned_cols=215 Identities=13% Similarity=0.121 Sum_probs=146.1
Q ss_pred CeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECC---CcEEEEECCCCeeeEEecCCCccEEEEEeeC--C
Q 014934 187 NCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSH---GKVQIWDASRCKRVRTMEGHRLRVGALAWSS--S 261 (415)
Q Consensus 187 ~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~d---g~V~iwd~~~~~~~~~l~~h~~~V~~l~~~~--~ 261 (415)
..|+++|........+. .+...+.+.+|+|||++|+.+... ..|.+||+.+++... +..+...+.+++|++ +
T Consensus 170 ~~l~~~d~~g~~~~~l~--~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~ 246 (417)
T TIGR02800 170 YELQVADYDGANPQTIT--RSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGS 246 (417)
T ss_pred ceEEEEcCCCCCCEEee--cCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCC
Confidence 36899998766655554 455678999999999999988754 479999998875443 333555667788983 4
Q ss_pred EE-EEEeCCC--cEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCC-C--cEEEEECCCCceeEEeccCCCc
Q 014934 262 LL-SSGSRDK--SILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGND-N--RLFVWNQHSTQPVLKYCEHTAA 335 (415)
Q Consensus 262 ~l-~sgs~dg--~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~d-g--~I~iwd~~~~~~~~~~~~h~~~ 335 (415)
.| ++.+.++ .|++||+.++. ...+..+........|+|||+.|+..+.. + .|+++|+.+++. ..+..+...
T Consensus 247 ~l~~~~~~~~~~~i~~~d~~~~~--~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~ 323 (417)
T TIGR02800 247 KLAVSLSKDGNPDIYVMDLDGKQ--LTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGY 323 (417)
T ss_pred EEEEEECCCCCccEEEEECCCCC--EEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCC
Confidence 45 4555554 58889988765 34455555555678999999998876543 2 688899887654 344455666
Q ss_pred EEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEEEEecCCC--cEEEEECC
Q 014934 336 VKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQN--QIIVWRYP 409 (415)
Q Consensus 336 V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~dg--~I~vw~~~ 409 (415)
+..++|+|+++.++.+..+.....|.+||+.++... .+..........|+|+|+.|+.+.. .++ .+.+.+..
T Consensus 324 ~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~p~~spdg~~l~~~~~-~~~~~~l~~~~~~ 397 (417)
T TIGR02800 324 NASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDTGLDESPSFAPNGRMILYATT-RGGRGVLGLVSTD 397 (417)
T ss_pred ccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCCCCCCCceECCCCCEEEEEEe-CCCcEEEEEEECC
Confidence 788899999987766653111237899999886543 3332333456789999999888532 222 45555543
No 227
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.47 E-value=1.2e-11 Score=119.51 Aligned_cols=232 Identities=14% Similarity=0.231 Sum_probs=159.3
Q ss_pred eeEeecCC-CcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEE-----ECC-----CcEEEEECC
Q 014934 170 LNLVDWSS-HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVG-----TSH-----GKVQIWDAS 238 (415)
Q Consensus 170 i~~l~ws~-~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g-----~~d-----g~V~iwd~~ 238 (415)
++..++++ ++++|.+.++.|.|++..++...... ... .+.++.|+|.|.+|.+= ..+ -.+++|+++
T Consensus 37 ~~v~~~S~~G~lfA~~~~~~v~i~~~~~~~~~lt~--~~~-~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~ve 113 (566)
T KOG2315|consen 37 CNVFAYSNNGRLFAYSDNQVVKVFEIATLKVVLCV--ELK-KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVE 113 (566)
T ss_pred ceeEEEcCCCcEEEEEcCCeEEEEEccCCcEEEEe--ccc-eeeeeeecccccccccccccccccCCCCCCCceeeeeec
Confidence 56777888 89999999999999999888733322 222 89999999999988762 112 347799887
Q ss_pred CCeeeEEec----------------------------------------CCCccEEEEEeeC----CEEEE-----EeCC
Q 014934 239 RCKRVRTME----------------------------------------GHRLRVGALAWSS----SLLSS-----GSRD 269 (415)
Q Consensus 239 ~~~~~~~l~----------------------------------------~h~~~V~~l~~~~----~~l~s-----gs~d 269 (415)
++.....+. -|...|+.+.+++ ..+++ ++.-
T Consensus 114 t~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaP 193 (566)
T KOG2315|consen 114 TGVQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAP 193 (566)
T ss_pred cceehhheehhhhcCcccccccchhhhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccCCCCCC
Confidence 632211110 1334555555552 12221 2223
Q ss_pred CcEEEEECCC--------------------------------------------------------CCccEEEeccccCC
Q 014934 270 KSILQRDIRA--------------------------------------------------------QEDFVSKLSGHKSE 293 (415)
Q Consensus 270 g~I~iwd~~~--------------------------------------------------------~~~~~~~~~~h~~~ 293 (415)
+.+++|.... +...... ..-.++
T Consensus 194 a~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~-L~k~GP 272 (566)
T KOG2315|consen 194 ASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVP-LLKEGP 272 (566)
T ss_pred cEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEe-cCCCCC
Confidence 3444444320 0000111 113578
Q ss_pred eEEEEEeCCCCEEEEE--eCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEE
Q 014934 294 VCGLKWSYDNRELASG--GNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHL 371 (415)
Q Consensus 294 V~~l~~spdg~~lasg--~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~ 371 (415)
|.++.|+|+++.|+++ -.--.+.|||++ +.+++.+ ..++=+++-|+|.|+.++++|=|...|.|-|||+.+.+++
T Consensus 273 Vhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i 349 (566)
T KOG2315|consen 273 VHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLI 349 (566)
T ss_pred ceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhc
Confidence 9999999999988774 455689999985 5566665 4566788999999998888887888999999999998888
Q ss_pred EEeeCCCCEEEEEECCCCCeEEEEEec----CCCcEEEEECC
Q 014934 372 SCMDTGSQVCNLVWSKNVNELVSTHGY----SQNQIIVWRYP 409 (415)
Q Consensus 372 ~~~~~~~~V~~l~~s~~~~~l~s~~g~----~dg~I~vw~~~ 409 (415)
..++.... +-+.|+|||+++++++.. -||.++||+|.
T Consensus 350 ~~~~a~~t-t~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 350 AKFKAANT-TVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred cccccCCc-eEEEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence 88764433 448999999999997543 38999999985
No 228
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.47 E-value=1.9e-11 Score=122.50 Aligned_cols=212 Identities=10% Similarity=0.068 Sum_probs=144.8
Q ss_pred ceeEeecCC-CcEEEEEc----CCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEE-EECCCc--EEEEECCCC
Q 014934 169 YLNLVDWSS-HNVLAVGL----GNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAV-GTSHGK--VQIWDASRC 240 (415)
Q Consensus 169 ~i~~l~ws~-~~~la~~~----d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~-g~~dg~--V~iwd~~~~ 240 (415)
.+....|+| ++.|+... +..|++||+.+++...+. .+.+.+.+..|+|||+.|+. .+.+|. |.+||+.++
T Consensus 203 ~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~--~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~ 280 (435)
T PRK05137 203 LVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVG--NFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSG 280 (435)
T ss_pred CeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEee--cCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCC
Confidence 467889999 66666653 358999999998876554 34567788999999998764 445555 777788876
Q ss_pred eeeEEecCCCccEEEEEee--CCEEEEEe-CCC--cEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCC---
Q 014934 241 KRVRTMEGHRLRVGALAWS--SSLLSSGS-RDK--SILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGND--- 312 (415)
Q Consensus 241 ~~~~~l~~h~~~V~~l~~~--~~~l~sgs-~dg--~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~d--- 312 (415)
+. ..+..+........|+ ++.|+..+ .+| .|+++|+..+. ...+..+...+....|+|||+.|+....+
T Consensus 281 ~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~--~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~ 357 (435)
T PRK05137 281 TT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSN--PRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQ 357 (435)
T ss_pred ce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCC--eEEeecCCCcccCeEECCCCCEEEEEEcCCCc
Confidence 54 4465566667778888 45666555 343 58888887654 33444345567778999999999886643
Q ss_pred CcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCC-CC--CeEEEEECCCCcEEEEeeCCCCEEEEEECCC
Q 014934 313 NRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGT-AD--RCIRFWNTTTNTHLSCMDTGSQVCNLVWSKN 388 (415)
Q Consensus 313 g~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~-~d--~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~ 388 (415)
..|.+||+..+.. ..+. ....+....|+|+|+.++.+.... .. ..|.++|+..+.. ..+.....+...+|+|-
T Consensus 358 ~~i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~~~~~~~~p~Wsp~ 433 (435)
T PRK05137 358 FSIGVMKPDGSGE-RILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVPTPGDASDPAWSPL 433 (435)
T ss_pred eEEEEEECCCCce-Eecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce-EEccCCCCccCcccCCC
Confidence 3688999865543 3332 233567889999999777665310 11 3688889876654 44444555777888764
No 229
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.46 E-value=1.2e-11 Score=123.38 Aligned_cols=211 Identities=15% Similarity=0.140 Sum_probs=138.8
Q ss_pred eeEeecCC-CcEEEEEcC----CeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEE-EECCCcEEEEEC--CCCe
Q 014934 170 LNLVDWSS-HNVLAVGLG----NCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAV-GTSHGKVQIWDA--SRCK 241 (415)
Q Consensus 170 i~~l~ws~-~~~la~~~d----~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~-g~~dg~V~iwd~--~~~~ 241 (415)
+...+|+| ++.|++... ..|++||+.+++...+.. ..+.+.+..|+|||+.|+. .+.+|...||.+ ..+
T Consensus 198 v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~--~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~- 274 (427)
T PRK02889 198 IISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVAN--FKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGS- 274 (427)
T ss_pred cccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeec--CCCCccceEECCCCCEEEEEEccCCCceEEEEECCCC-
Confidence 55778999 677776642 369999999998766543 3356678999999998875 567887777754 433
Q ss_pred eeEEecCCCccEEEEEee--CCEEEEEe-CCCcEEEEEC--CCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCC---
Q 014934 242 RVRTMEGHRLRVGALAWS--SSLLSSGS-RDKSILQRDI--RAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDN--- 313 (415)
Q Consensus 242 ~~~~l~~h~~~V~~l~~~--~~~l~sgs-~dg~I~iwd~--~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg--- 313 (415)
....+..+........|+ ++.|+..+ .+|...+|.+ ..+. ...+..+.......+|+|||++|+..+.++
T Consensus 275 ~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~--~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~ 352 (427)
T PRK02889 275 GLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGA--AQRVTFTGSYNTSPRISPDGKLLAYISRVGGAF 352 (427)
T ss_pred CcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCc--eEEEecCCCCcCceEECCCCCEEEEEEccCCcE
Confidence 345565566666777898 45565444 4566666654 4433 222222233345688999999999877654
Q ss_pred cEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee-CCCCEEEEEECCC
Q 014934 314 RLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKN 388 (415)
Q Consensus 314 ~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~-~~~~V~~l~~s~~ 388 (415)
.|++||+.+++.. .+..+ .......|+|+++.++.+........+.+.++ +|.....+. ....+...+|+|-
T Consensus 353 ~I~v~d~~~g~~~-~lt~~-~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 353 KLYVQDLATGQVT-ALTDT-TRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred EEEEEECCCCCeE-EccCC-CCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCCCCCCCCccCCC
Confidence 6999999887654 33322 34467899999998877764111234666676 455555554 3456777888874
No 230
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.45 E-value=1.4e-11 Score=119.27 Aligned_cols=183 Identities=16% Similarity=0.338 Sum_probs=148.6
Q ss_pred EEEEECCCcEEEEECCCCeeeEEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEe------ccccC--
Q 014934 223 LAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKL------SGHKS-- 292 (415)
Q Consensus 223 la~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~------~~h~~-- 292 (415)
|.+++....|.-++++.|+.+..+....+.++++..+ ..+|++|+.+|.|-.||.|.... +..+ ..|.+
T Consensus 148 ly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksr-v~~l~~~~~v~s~pg~~ 226 (703)
T KOG2321|consen 148 LYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSR-VGTLDAASSVNSHPGGD 226 (703)
T ss_pred EEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhh-heeeecccccCCCcccc
Confidence 3444445578888999999998888888899999998 47889999999999999998763 2222 22333
Q ss_pred ---CeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEeccCC--CcEEEEEEcCCC-CcEEEEEcCCCCCeEEEEECC
Q 014934 293 ---EVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHT--AAVKAIAWSPHL-HGLLASGGGTADRCIRFWNTT 366 (415)
Q Consensus 293 ---~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~~h~--~~V~~l~~sp~~-~~llasggg~~d~~I~iwd~~ 366 (415)
.|++++|+.+|-.+++|..+|.|.|||+++.+++..- .|. -+|..+.|.+.+ ...+++. ....++|||-.
T Consensus 227 ~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~k-dh~~e~pi~~l~~~~~~~q~~v~S~---Dk~~~kiWd~~ 302 (703)
T KOG2321|consen 227 AAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVK-DHGYELPIKKLDWQDTDQQNKVVSM---DKRILKIWDEC 302 (703)
T ss_pred ccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeec-ccCCccceeeecccccCCCceEEec---chHHhhhcccc
Confidence 3999999999999999999999999999999988654 444 578899997762 3366666 47889999999
Q ss_pred CCcEEEEeeCCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCCc
Q 014934 367 TNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMS 412 (415)
Q Consensus 367 t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~ 412 (415)
+|+....+.....+..+++-|++-.+++ +..+..+..|=+|++-
T Consensus 303 ~Gk~~asiEpt~~lND~C~~p~sGm~f~--Ane~~~m~~yyiP~LG 346 (703)
T KOG2321|consen 303 TGKPMASIEPTSDLNDFCFVPGSGMFFT--ANESSKMHTYYIPSLG 346 (703)
T ss_pred cCCceeeccccCCcCceeeecCCceEEE--ecCCCcceeEEccccC
Confidence 9999999988888999999999988888 6678888888887764
No 231
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.45 E-value=2.6e-11 Score=117.92 Aligned_cols=185 Identities=15% Similarity=0.260 Sum_probs=153.2
Q ss_pred CcEEEEE-cCCeEEEEECCCCCeEEeEec--CCCCCeEEEEEc------C--------------CCCeEEEEECCCcEEE
Q 014934 178 HNVLAVG-LGNCVYLWNACSSKVTKLCDL--GIDDSVCSVGWA------N--------------RNTHLAVGTSHGKVQI 234 (415)
Q Consensus 178 ~~~la~~-~d~~V~iwd~~~~~~~~~~~~--~~~~~V~~v~~s------p--------------~g~~la~g~~dg~V~i 234 (415)
..++|.. .||.++||+...+++...+.. .-.+..++..|. | +-..++-|...|.|.+
T Consensus 5 ~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ 84 (541)
T KOG4547|consen 5 LDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLL 84 (541)
T ss_pred hheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEE
Confidence 4456665 689999999999887666543 124455555552 1 2346888999999999
Q ss_pred EECCCCeeeEEec--CCCccEEEEEeeC--CEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEe
Q 014934 235 WDASRCKRVRTME--GHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGG 310 (415)
Q Consensus 235 wd~~~~~~~~~l~--~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~ 310 (415)
|++..++....+. .|.+.|.++.|+. ..|.+++.|+.+..|+..... ....+.+....+.+++.+|||..|++++
T Consensus 85 ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~-~~~~~~~~~~~~~sl~is~D~~~l~~as 163 (541)
T KOG4547|consen 85 YSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKV-IIRIWKEQKPLVSSLCISPDGKILLTAS 163 (541)
T ss_pred EEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccce-eeeeeccCCCccceEEEcCCCCEEEecc
Confidence 9999998887776 6999999999984 689999999999999998876 5778888888999999999999999986
Q ss_pred CCCcEEEEECCCCceeEEeccCCCcEEEEEEcCC-----CCcEEEEEcCCCCCeEEEEECCC
Q 014934 311 NDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPH-----LHGLLASGGGTADRCIRFWNTTT 367 (415)
Q Consensus 311 ~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~-----~~~llasggg~~d~~I~iwd~~t 367 (415)
++|++||+++++.+..|.+|.+.|.++.|--. |.++|.+.. .+..|.+|-+..
T Consensus 164 --~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~--~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 164 --RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAA--AERGITVWVVEK 221 (541)
T ss_pred --ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccc--cccceeEEEEEc
Confidence 58999999999999999999999999999877 777888876 678888887654
No 232
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.44 E-value=8.2e-11 Score=117.75 Aligned_cols=215 Identities=13% Similarity=0.113 Sum_probs=143.7
Q ss_pred eEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECC---CcEEEEECCCCeeeEEecCCCccEEEEEee--CCE
Q 014934 188 CVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSH---GKVQIWDASRCKRVRTMEGHRLRVGALAWS--SSL 262 (415)
Q Consensus 188 ~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~d---g~V~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~ 262 (415)
.|+++|...+....+. .+...+.+..|+|||++|+..+.+ ..|.+||+.+++... +....+.+....|+ ++.
T Consensus 180 ~l~~~d~~g~~~~~l~--~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~ 256 (430)
T PRK00178 180 TLQRSDYDGARAVTLL--QSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSK 256 (430)
T ss_pred EEEEECCCCCCceEEe--cCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCE
Confidence 4888888776655544 456788999999999999877644 358899998876433 33334445568888 355
Q ss_pred EE-EEeCCC--cEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeC-C--CcEEEEECCCCceeEEeccCCCcE
Q 014934 263 LS-SGSRDK--SILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGN-D--NRLFVWNQHSTQPVLKYCEHTAAV 336 (415)
Q Consensus 263 l~-sgs~dg--~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~-d--g~I~iwd~~~~~~~~~~~~h~~~V 336 (415)
|+ +.+.+| .|+++|+.++. ...+..+........|+|||+.|+..+. + ..|+++|+.+++.. .+.......
T Consensus 257 la~~~~~~g~~~Iy~~d~~~~~--~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~-~lt~~~~~~ 333 (430)
T PRK00178 257 LAFVLSKDGNPEIYVMDLASRQ--LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAE-RVTFVGNYN 333 (430)
T ss_pred EEEEEccCCCceEEEEECCCCC--eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCc
Confidence 54 555555 58888998765 3445556666777899999998876654 2 36888898877643 222222333
Q ss_pred EEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEEEEecCC--CcEEEEECCC
Q 014934 337 KAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQ--NQIIVWRYPT 410 (415)
Q Consensus 337 ~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~d--g~I~vw~~~s 410 (415)
....|+|+++.++.+........|.+||+.+++... +..........|+|+|+.++.+.. .+ ..|.+++...
T Consensus 334 ~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt~~~~~~~p~~spdg~~i~~~~~-~~g~~~l~~~~~~g 407 (430)
T PRK00178 334 ARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LTDTSLDESPSVAPNGTMLIYATR-QQGRGVLMLVSING 407 (430)
T ss_pred cceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE-ccCCCCCCCceECCCCCEEEEEEe-cCCceEEEEEECCC
Confidence 457899999977776641112358899999887533 322223335689999999987532 33 3567777654
No 233
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.43 E-value=6.3e-11 Score=117.98 Aligned_cols=215 Identities=15% Similarity=0.137 Sum_probs=140.7
Q ss_pred EeecCC-Cc---EEEEEc-C--CeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEEC-CC----cEEEEECCC
Q 014934 172 LVDWSS-HN---VLAVGL-G--NCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTS-HG----KVQIWDASR 239 (415)
Q Consensus 172 ~l~ws~-~~---~la~~~-d--~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~-dg----~V~iwd~~~ 239 (415)
.-.|+| +. ++.++. + ..|++.++.+++..++..+ .+.....+|+|||+.||.... +| .+.+|++..
T Consensus 189 sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~--~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~ 266 (428)
T PRK01029 189 TPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILAL--QGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLET 266 (428)
T ss_pred cceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecC--CCCccceEECCCCCEEEEEECCCCCcceeEEEeeccc
Confidence 457999 43 222442 2 4799999999887766643 345667899999998887653 23 345577664
Q ss_pred C---eeeEEecCCCccEEEEEee--CCEEEEEe-CCCc--EEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeC
Q 014934 240 C---KRVRTMEGHRLRVGALAWS--SSLLSSGS-RDKS--ILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGN 311 (415)
Q Consensus 240 ~---~~~~~l~~h~~~V~~l~~~--~~~l~sgs-~dg~--I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~ 311 (415)
+ +.......+.......+|+ ++.|+..+ .+|. |+++++.........+..+...+....|+|||+.|+..+.
T Consensus 267 g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~ 346 (428)
T PRK01029 267 GAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSV 346 (428)
T ss_pred CCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEc
Confidence 2 3333333333344667888 45555444 5665 4444554322223445455567788999999999987654
Q ss_pred C---CcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCCCEEEEEECCC
Q 014934 312 D---NRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKN 388 (415)
Q Consensus 312 d---g~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~ 388 (415)
+ ..|++||+.+++.. .+......+....|+|+|+.++.+........|.+||+.+++..........+...+|+|.
T Consensus 347 ~~g~~~I~v~dl~~g~~~-~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~~g~~~~p~Ws~~ 425 (428)
T PRK01029 347 IKGVRQICVYDLATGRDY-QLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVIGSGEKRFPSWGAF 425 (428)
T ss_pred CCCCcEEEEEECCCCCeE-EccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCcccCceecCC
Confidence 3 46999999888654 3433344567899999999887766422356799999998876655555566777888875
Q ss_pred C
Q 014934 389 V 389 (415)
Q Consensus 389 ~ 389 (415)
.
T Consensus 426 ~ 426 (428)
T PRK01029 426 P 426 (428)
T ss_pred C
Confidence 4
No 234
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.42 E-value=1.2e-12 Score=118.69 Aligned_cols=218 Identities=17% Similarity=0.225 Sum_probs=165.6
Q ss_pred eecCC-CcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEE-ECCCcEEEEECCCCeeeEEecCCC
Q 014934 173 VDWSS-HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVG-TSHGKVQIWDASRCKRVRTMEGHR 250 (415)
Q Consensus 173 l~ws~-~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g-~~dg~V~iwd~~~~~~~~~l~~h~ 250 (415)
..||| ++++|+..+-.+.|-|..+-++.+++.. -+.|.-+.|..|..+++.+ ..++.|++|++...+-...+....
T Consensus 14 c~fSp~g~yiAs~~~yrlviRd~~tlq~~qlf~c--ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~ 91 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRYRLVIRDSETLQLHQLFLC--LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQ 91 (447)
T ss_pred eeECCCCCeeeeeeeeEEEEeccchhhHHHHHHH--HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCC
Confidence 46888 9999999999999999988887776643 3678889999988766554 678899999999988888888888
Q ss_pred ccEEEEEeeC---CEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCc---EEEEECCCCc
Q 014934 251 LRVGALAWSS---SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNR---LFVWNQHSTQ 324 (415)
Q Consensus 251 ~~V~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~---I~iwd~~~~~ 324 (415)
..+..+.|+| ++|.+...|-.|.+|.+.+... ..+.-.+..+.+++|+|||++.|.++.-.. +.|..-....
T Consensus 92 agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~--~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ 169 (447)
T KOG4497|consen 92 AGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKG--YLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWI 169 (447)
T ss_pred CcceeeeECCCcceEeeeecceeEEEEEEecccee--EEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHH
Confidence 9999999994 6788889999999999988763 333334556799999999999988775322 2222222334
Q ss_pred eeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEEEEecCCCcEE
Q 014934 325 PVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQII 404 (415)
Q Consensus 325 ~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~ 404 (415)
.+..+...+-..+.+.|+|+|..+. +||..-.-.+..++.+-.+..+.|+|.+++|++ |+.|+.++
T Consensus 170 ll~~f~~dT~DltgieWsPdg~~la------------Vwd~~Leykv~aYe~~lG~k~v~wsP~~qflav--GsyD~~lr 235 (447)
T KOG4497|consen 170 LLKEFKLDTIDLTGIEWSPDGNWLA------------VWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAV--GSYDQMLR 235 (447)
T ss_pred HHHhcCCCcccccCceECCCCcEEE------------EecchhhheeeeeeeccceeEEEeccccceEEe--eccchhhh
Confidence 5556666677788999999986333 444333333334455677888999999999999 88999988
Q ss_pred EEEC
Q 014934 405 VWRY 408 (415)
Q Consensus 405 vw~~ 408 (415)
|-+-
T Consensus 236 vlnh 239 (447)
T KOG4497|consen 236 VLNH 239 (447)
T ss_pred hhce
Confidence 7654
No 235
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.40 E-value=4.5e-11 Score=110.93 Aligned_cols=232 Identities=9% Similarity=0.117 Sum_probs=163.5
Q ss_pred eeEeecCC---CcEEEEE-cCCeEEEEECCCCCeEEeE-----ecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCC
Q 014934 170 LNLVDWSS---HNVLAVG-LGNCVYLWNACSSKVTKLC-----DLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRC 240 (415)
Q Consensus 170 i~~l~ws~---~~~la~~-~d~~V~iwd~~~~~~~~~~-----~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~ 240 (415)
+..+.|.. .+++... .+..+.........+.... .......|..++.. ...|++|..+|.+++|..+.+
T Consensus 58 is~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~~k~~ 135 (412)
T KOG3881|consen 58 ISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRHDKSG 135 (412)
T ss_pred hhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEEeccCC
Confidence 44555543 2344444 4555666655554443332 01223455555443 335777899999999998743
Q ss_pred e----eeEEecCCCccEEEEEee---CCEEEEEeCC--CcEEEEECCCCCccEEEecc-------c--cCCeEEEEEeCC
Q 014934 241 K----RVRTMEGHRLRVGALAWS---SSLLSSGSRD--KSILQRDIRAQEDFVSKLSG-------H--KSEVCGLKWSYD 302 (415)
Q Consensus 241 ~----~~~~l~~h~~~V~~l~~~---~~~l~sgs~d--g~I~iwd~~~~~~~~~~~~~-------h--~~~V~~l~~spd 302 (415)
. .+..+..+ ..+..|.-. +.++++|+.. ..+.+||+....+ +..-+. - .-.++++.|-+.
T Consensus 136 d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~q-iw~aKNvpnD~L~LrVPvW~tdi~Fl~g 213 (412)
T KOG3881|consen 136 DLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQ-IWSAKNVPNDRLGLRVPVWITDIRFLEG 213 (412)
T ss_pred ccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeeccccee-eeeccCCCCccccceeeeeeccceecCC
Confidence 2 22233322 234444433 6789999999 8899999987742 222111 1 123677888887
Q ss_pred --CCEEEEEeCCCcEEEEECCCC-ceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEE-ee-CC
Q 014934 303 --NRELASGGNDNRLFVWNQHST-QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSC-MD-TG 377 (415)
Q Consensus 303 --g~~lasg~~dg~I~iwd~~~~-~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~-~~-~~ 377 (415)
...||+++.-+.|++||.+.+ +|+.+|.--..++.++...|.++.++ +|. .-+.+..||+++++.+.+ ++ ..
T Consensus 214 ~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy-~gn--~~g~l~~FD~r~~kl~g~~~kg~t 290 (412)
T KOG3881|consen 214 SPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIY-TGN--TKGQLAKFDLRGGKLLGCGLKGIT 290 (412)
T ss_pred CCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEE-Eec--ccchhheecccCceeeccccCCcc
Confidence 889999999999999999866 68889888889999999999998544 444 789999999999998877 43 45
Q ss_pred CCEEEEEECCCCCeEEEEEecCCCcEEEEECCC
Q 014934 378 SQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPT 410 (415)
Q Consensus 378 ~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s 410 (415)
+.|.++..+|.+++|++ ++-|..|+|+|+.+
T Consensus 291 Gsirsih~hp~~~~las--~GLDRyvRIhD~kt 321 (412)
T KOG3881|consen 291 GSIRSIHCHPTHPVLAS--CGLDRYVRIHDIKT 321 (412)
T ss_pred CCcceEEEcCCCceEEe--eccceeEEEeeccc
Confidence 78999999999999999 67899999999998
No 236
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.40 E-value=3.2e-10 Score=113.80 Aligned_cols=213 Identities=13% Similarity=0.077 Sum_probs=139.5
Q ss_pred eEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECC-C--cEEEEECCCCeeeEEecCCCccEEEEEee--CCE
Q 014934 188 CVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSH-G--KVQIWDASRCKRVRTMEGHRLRVGALAWS--SSL 262 (415)
Q Consensus 188 ~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~d-g--~V~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~ 262 (415)
.|+++|........+. .....+.+..|+|||++|+..+.+ + .|.+||+.+++... +....+.....+|+ ++.
T Consensus 199 ~l~i~d~dG~~~~~l~--~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~ 275 (448)
T PRK04792 199 QLMIADYDGYNEQMLL--RSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKK 275 (448)
T ss_pred EEEEEeCCCCCceEee--cCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCE
Confidence 6888887766554443 446788999999999999887543 3 58888988776432 22223334467888 354
Q ss_pred E-EEEeCCCc--EEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeC-C--CcEEEEECCCCceeEEeccCCCcE
Q 014934 263 L-SSGSRDKS--ILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGN-D--NRLFVWNQHSTQPVLKYCEHTAAV 336 (415)
Q Consensus 263 l-~sgs~dg~--I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~-d--g~I~iwd~~~~~~~~~~~~h~~~V 336 (415)
| ++.+.+|. |+++|+.++. ...+..+.......+|+|||+.|+..+. + ..|+++|+.+++... +..+....
T Consensus 276 La~~~~~~g~~~Iy~~dl~tg~--~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~~~ 352 (448)
T PRK04792 276 LALVLSKDGQPEIYVVDIATKA--LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFEGEQN 352 (448)
T ss_pred EEEEEeCCCCeEEEEEECCCCC--eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-EecCCCCC
Confidence 4 45666775 7788887765 4455555566778899999998877553 2 358888888776432 32222233
Q ss_pred EEEEEcCCCCcEEEEEcCCCCC--eEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEEEEecCCC--cEEEEECCC
Q 014934 337 KAIAWSPHLHGLLASGGGTADR--CIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQN--QIIVWRYPT 410 (415)
Q Consensus 337 ~~l~~sp~~~~llasggg~~d~--~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~dg--~I~vw~~~s 410 (415)
...+|+|+|+.++.+.. .++ .|.++|+.+++... +..........|+|+|+.|+.+. ..++ .|.+++...
T Consensus 353 ~~~~~SpDG~~l~~~~~--~~g~~~I~~~dl~~g~~~~-lt~~~~d~~ps~spdG~~I~~~~-~~~g~~~l~~~~~~G 426 (448)
T PRK04792 353 LGGSITPDGRSMIMVNR--TNGKFNIARQDLETGAMQV-LTSTRLDESPSVAPNGTMVIYST-TYQGKQVLAAVSIDG 426 (448)
T ss_pred cCeeECCCCCEEEEEEe--cCCceEEEEEECCCCCeEE-ccCCCCCCCceECCCCCEEEEEE-ecCCceEEEEEECCC
Confidence 45799999997777654 333 56678888886533 32222223458999999988753 3344 467777643
No 237
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.39 E-value=2.4e-12 Score=122.22 Aligned_cols=238 Identities=21% Similarity=0.274 Sum_probs=174.7
Q ss_pred cceeEeecCC-CcEEEEEcC-CeEEEEECCCCCeEEeEecCCCCCeEEEEEcCC--CCeEEEEECCCcEEEEECCCCee-
Q 014934 168 FYLNLVDWSS-HNVLAVGLG-NCVYLWNACSSKVTKLCDLGIDDSVCSVGWANR--NTHLAVGTSHGKVQIWDASRCKR- 242 (415)
Q Consensus 168 ~~i~~l~ws~-~~~la~~~d-~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~--g~~la~g~~dg~V~iwd~~~~~~- 242 (415)
-+++.|.|+. +.+|+.|+| ..|.+||...++....+..+|...|.--.|.|. ..-+++++.||.|++=.+...+.
T Consensus 143 GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~ 222 (559)
T KOG1334|consen 143 GCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYV 222 (559)
T ss_pred CccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccce
Confidence 4689999998 889999865 689999999999888887799889988889884 46789999999999887643332
Q ss_pred --eEEecCCCccEEEEEee---CCEEEEEeCCCcEEEEECCCCCcc--EEEecc--------------------------
Q 014934 243 --VRTMEGHRLRVGALAWS---SSLLSSGSRDKSILQRDIRAQEDF--VSKLSG-------------------------- 289 (415)
Q Consensus 243 --~~~l~~h~~~V~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~--~~~~~~-------------------------- 289 (415)
...+..|.++|..++.. +..|.+++.|+.+.-+|++..... ...-..
T Consensus 223 e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~ 302 (559)
T KOG1334|consen 223 ENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGS 302 (559)
T ss_pred ecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCCh
Confidence 23455789999988876 688999999999999998864310 000000
Q ss_pred --------------------------------ccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCC--C----------ce
Q 014934 290 --------------------------------HKSEVCGLKWSYDNRELASGGNDNRLFVWNQHS--T----------QP 325 (415)
Q Consensus 290 --------------------------------h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~--~----------~~ 325 (415)
....|+|++++.++.-|++.-+|-.|+++.-.- + ..
T Consensus 303 dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~ 382 (559)
T KOG1334|consen 303 DQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQY 382 (559)
T ss_pred hhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhc
Confidence 112367777776666666666677777774321 1 11
Q ss_pred eEE-eccCCC--cEEEEEEc-CCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCC-CCEEEEEECCCCCeEEEEEecCC
Q 014934 326 VLK-YCEHTA--AVKAIAWS-PHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTG-SQVCNLVWSKNVNELVSTHGYSQ 400 (415)
Q Consensus 326 ~~~-~~~h~~--~V~~l~~s-p~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~-~~V~~l~~s~~~~~l~s~~g~~d 400 (415)
+.. +++|.. .|+.+-|- |.. .++++|+ .-|.|.||+-.+++.+..+... .-|.||.-+|.-..|++ .+-|
T Consensus 383 ~k~vYKGHrN~~TVKgVNFfGPrs-EyVvSGS--DCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAs--SGid 457 (559)
T KOG1334|consen 383 VKRVYKGHRNSRTVKGVNFFGPRS-EYVVSGS--DCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLAS--SGID 457 (559)
T ss_pred cchhhcccccccccceeeeccCcc-ceEEecC--ccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhc--cCCc
Confidence 222 567753 46777654 443 4777776 8899999999999998877633 36888999999999988 5688
Q ss_pred CcEEEEECCC
Q 014934 401 NQIIVWRYPT 410 (415)
Q Consensus 401 g~I~vw~~~s 410 (415)
..|+||---+
T Consensus 458 ~DVKIWTP~~ 467 (559)
T KOG1334|consen 458 HDVKIWTPLT 467 (559)
T ss_pred cceeeecCCc
Confidence 9999998644
No 238
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.39 E-value=2.7e-11 Score=108.60 Aligned_cols=222 Identities=18% Similarity=0.203 Sum_probs=158.6
Q ss_pred cCCeEEEEECCCCCeEEeEe-cC-C---CCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCe--eeEEecCCCccEEEEE
Q 014934 185 LGNCVYLWNACSSKVTKLCD-LG-I---DDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCK--RVRTMEGHRLRVGALA 257 (415)
Q Consensus 185 ~d~~V~iwd~~~~~~~~~~~-~~-~---~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~--~~~~l~~h~~~V~~l~ 257 (415)
..|.|.++.....+....+. +. . .....++.|++.|..++++..+|.+.+-+..... .++..+.|...++...
T Consensus 93 a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~ 172 (339)
T KOG0280|consen 93 ARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAK 172 (339)
T ss_pred ccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeee
Confidence 56788888765433222221 10 0 1135678899999999999999999976655443 3447889999999999
Q ss_pred ee---CCEEEEEeCCCcEEEEECCCCCccEE-EeccccCCeEEEEEeC-CCCEEEEEeCCCcEEEEECCC-CceeEEecc
Q 014934 258 WS---SSLLSSGSRDKSILQRDIRAQEDFVS-KLSGHKSEVCGLKWSY-DNRELASGGNDNRLFVWNQHS-TQPVLKYCE 331 (415)
Q Consensus 258 ~~---~~~l~sgs~dg~I~iwd~~~~~~~~~-~~~~h~~~V~~l~~sp-dg~~lasg~~dg~I~iwd~~~-~~~~~~~~~ 331 (415)
|+ |+++.+|+.|+.+..||+|.+...+. ..+.|...|++|.-+| .+.++++|+.|-.|++||.++ ++++..- .
T Consensus 173 f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~-~ 251 (339)
T KOG0280|consen 173 FSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKA-K 251 (339)
T ss_pred cccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccC-c
Confidence 87 79999999999999999996554443 3567899999999886 688999999999999999994 5777654 4
Q ss_pred CCCcEEEEEEcCCCCc-EEEEEcCCCCCeEEEEECCCCcEE-----EEe-eCCCCEEEEEECCCCCeEEEEEecCCCcEE
Q 014934 332 HTAAVKAIAWSPHLHG-LLASGGGTADRCIRFWNTTTNTHL-----SCM-DTGSQVCNLVWSKNVNELVSTHGYSQNQII 404 (415)
Q Consensus 332 h~~~V~~l~~sp~~~~-llasggg~~d~~I~iwd~~t~~~~-----~~~-~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~ 404 (415)
-.+.|+.+.++|.-.. +|+++ .-+-.+|-+...+... ... .+.+-...-.|.....+|++++ +-|+.|+
T Consensus 252 v~GGVWRi~~~p~~~~~lL~~C---Mh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCs-FYDk~~~ 327 (339)
T KOG0280|consen 252 VGGGVWRIKHHPEIFHRLLAAC---MHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCS-FYDKKIR 327 (339)
T ss_pred cccceEEEEecchhhhHHHHHH---HhcCceEEEecccccchheeeeccccccceeeccccccccceeeeee-cccccee
Confidence 4589999999997543 45554 4555777777654322 111 1456677788866666777764 4567755
Q ss_pred -EEECCCC
Q 014934 405 -VWRYPTM 411 (415)
Q Consensus 405 -vw~~~s~ 411 (415)
+|-.-+.
T Consensus 328 ~~Wl~~t~ 335 (339)
T KOG0280|consen 328 QLWLHITG 335 (339)
T ss_pred eeeeeccC
Confidence 8865444
No 239
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.38 E-value=3.4e-10 Score=112.74 Aligned_cols=222 Identities=14% Similarity=0.096 Sum_probs=139.9
Q ss_pred eEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEE---EEECCC--cEEEEECCCCeeeEEecCCCccEEEEEee--C
Q 014934 188 CVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLA---VGTSHG--KVQIWDASRCKRVRTMEGHRLRVGALAWS--S 260 (415)
Q Consensus 188 ~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la---~g~~dg--~V~iwd~~~~~~~~~l~~h~~~V~~l~~~--~ 260 (415)
.|++.|...+....+.. ....+.+-.|+|||+.++ +...+| .|.+.++..++... +....+.....+|+ +
T Consensus 166 ~l~~~d~dG~~~~~lt~--~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~p~wSPDG 242 (428)
T PRK01029 166 ELWSVDYDGQNLRPLTQ--EHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQGNQLMPTFSPRK 242 (428)
T ss_pred eEEEEcCCCCCceEccc--CCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-eecCCCCccceEECCCC
Confidence 68888888777666553 345667889999997533 334444 47777887665333 22234445567888 4
Q ss_pred CEEEEEe-CCC----cEEEEECCCC--CccEEEeccccCCeEEEEEeCCCCEEEEEe-CCCc--EEEEECCC-CceeEEe
Q 014934 261 SLLSSGS-RDK----SILQRDIRAQ--EDFVSKLSGHKSEVCGLKWSYDNRELASGG-NDNR--LFVWNQHS-TQPVLKY 329 (415)
Q Consensus 261 ~~l~sgs-~dg----~I~iwd~~~~--~~~~~~~~~h~~~V~~l~~spdg~~lasg~-~dg~--I~iwd~~~-~~~~~~~ 329 (415)
+.|+..+ .+| .+.+|++..+ .........+.......+|+|||+.|+..+ .+|. |+++++.. +.....+
T Consensus 243 ~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~l 322 (428)
T PRK01029 243 KLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLL 322 (428)
T ss_pred CEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEe
Confidence 5555443 333 3344676642 122223323333456789999999888765 4554 55555542 2334455
Q ss_pred ccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEEEEe-cCCCcEEEEEC
Q 014934 330 CEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHG-YSQNQIIVWRY 408 (415)
Q Consensus 330 ~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g-~~dg~I~vw~~ 408 (415)
..+...+....|+|+|+.++.+........|.+||+.+++..........+....|+|||+.|+.+.. .....|.+|++
T Consensus 323 t~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl 402 (428)
T PRK01029 323 TKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISL 402 (428)
T ss_pred ccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEEC
Confidence 55556678899999999777765411235799999999887554434446778999999999886432 12457888888
Q ss_pred CCCc
Q 014934 409 PTMS 412 (415)
Q Consensus 409 ~s~~ 412 (415)
...+
T Consensus 403 ~~g~ 406 (428)
T PRK01029 403 ITKK 406 (428)
T ss_pred CCCC
Confidence 7654
No 240
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.38 E-value=1.3e-09 Score=106.16 Aligned_cols=231 Identities=14% Similarity=0.094 Sum_probs=152.1
Q ss_pred CcEEEEE--cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEecCCCccEEE
Q 014934 178 HNVLAVG--LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGA 255 (415)
Q Consensus 178 ~~~la~~--~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~ 255 (415)
++++++. .++.|.+.|..+.++...+..+. ..-..+.++|||+++.+++.||.|.++|+.+.+.+.++.... ...+
T Consensus 5 ~~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~-~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~ 82 (369)
T PF02239_consen 5 GNLFYVVERGSGSVAVIDGATNKVVARIPTGG-APHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRG 82 (369)
T ss_dssp GGEEEEEEGGGTEEEEEETTT-SEEEEEE-ST-TEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEE
T ss_pred ccEEEEEecCCCEEEEEECCCCeEEEEEcCCC-CceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-Ccce
Confidence 4666555 46899999999999988886432 334557899999999999999999999999999999887543 4566
Q ss_pred EEee--CCEEEEEe-CCCcEEEEECCCCCccEEEecc-------ccCCeEEEEEeCCCCEEEEEeC-CCcEEEEECCCCc
Q 014934 256 LAWS--SSLLSSGS-RDKSILQRDIRAQEDFVSKLSG-------HKSEVCGLKWSYDNRELASGGN-DNRLFVWNQHSTQ 324 (415)
Q Consensus 256 l~~~--~~~l~sgs-~dg~I~iwd~~~~~~~~~~~~~-------h~~~V~~l~~spdg~~lasg~~-dg~I~iwd~~~~~ 324 (415)
++++ +++++++. ..+.+.++|.++.+ .+..+.. ....+.++..+|....++..-. -+.|.+.|....+
T Consensus 83 i~~s~DG~~~~v~n~~~~~v~v~D~~tle-~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~ 161 (369)
T PF02239_consen 83 IAVSPDGKYVYVANYEPGTVSVIDAETLE-PVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPK 161 (369)
T ss_dssp EEE--TTTEEEEEEEETTEEEEEETTT---EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSS
T ss_pred EEEcCCCCEEEEEecCCCceeEecccccc-ceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccc
Confidence 7776 67777654 68999999999887 4554432 2346788888998886666554 4889888987765
Q ss_pred eeE-EeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeC---------------------------
Q 014934 325 PVL-KYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDT--------------------------- 376 (415)
Q Consensus 325 ~~~-~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~--------------------------- 376 (415)
.+. +............|.|++++++++.. .+..|-++|..+++.+..++.
T Consensus 162 ~~~~~~i~~g~~~~D~~~dpdgry~~va~~--~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~ 239 (369)
T PF02239_consen 162 NLKVTTIKVGRFPHDGGFDPDGRYFLVAAN--GSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLG 239 (369)
T ss_dssp CEEEEEEE--TTEEEEEE-TTSSEEEEEEG--GGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSS
T ss_pred ccceeeecccccccccccCcccceeeeccc--ccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeecccc
Confidence 443 23244556788999999998888765 567888888887655443321
Q ss_pred ----------------------------CCCEEEEEECCCCCeEEEEE--ecCCCcEEEEECCCCcc
Q 014934 377 ----------------------------GSQVCNLVWSKNVNELVSTH--GYSQNQIIVWRYPTMSK 413 (415)
Q Consensus 377 ----------------------------~~~V~~l~~s~~~~~l~s~~--g~~dg~I~vw~~~s~~~ 413 (415)
.+.-..+..+|+++++.+.. +...+.|.|+|..+++.
T Consensus 240 ~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~ 306 (369)
T PF02239_consen 240 YFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKV 306 (369)
T ss_dssp SSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEE
T ss_pred ceecccccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcce
Confidence 11113456688888888730 13357899999888754
No 241
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.38 E-value=3.4e-11 Score=125.35 Aligned_cols=215 Identities=16% Similarity=0.242 Sum_probs=147.6
Q ss_pred EECCCCCeEEeEecCCCCCeEEEEEcCC-CCeEEEEECCCcEEEEECCCC-------eeeEEecCCCccEEEEEe--eCC
Q 014934 192 WNACSSKVTKLCDLGIDDSVCSVGWANR-NTHLAVGTSHGKVQIWDASRC-------KRVRTMEGHRLRVGALAW--SSS 261 (415)
Q Consensus 192 wd~~~~~~~~~~~~~~~~~V~~v~~sp~-g~~la~g~~dg~V~iwd~~~~-------~~~~~l~~h~~~V~~l~~--~~~ 261 (415)
|+.+..-+..+. .|...|..++.++. +.++++|+.||+|++||...- +...++..-..++.++.. +++
T Consensus 1034 W~p~G~lVAhL~--Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~ 1111 (1431)
T KOG1240|consen 1034 WNPRGILVAHLH--EHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD 1111 (1431)
T ss_pred CCccceEeehhh--hccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC
Confidence 665443333333 67778888888764 599999999999999998531 222333333455666555 478
Q ss_pred EEEEEeCCCcEEEEECCCCC--c----cEEEecccc-CC-eEEEEEeC-CCC-EEEEEeCCCcEEEEECCCCceeEEec-
Q 014934 262 LLSSGSRDKSILQRDIRAQE--D----FVSKLSGHK-SE-VCGLKWSY-DNR-ELASGGNDNRLFVWNQHSTQPVLKYC- 330 (415)
Q Consensus 262 ~l~sgs~dg~I~iwd~~~~~--~----~~~~~~~h~-~~-V~~l~~sp-dg~-~lasg~~dg~I~iwd~~~~~~~~~~~- 330 (415)
.+++++.||.|.+.++.... . .......+. +. |..-++.. ++. .|+.+...+.|..||++....+.+++
T Consensus 1112 ~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~ 1191 (1431)
T KOG1240|consen 1112 QFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKN 1191 (1431)
T ss_pred eEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhc
Confidence 99999999999999987632 1 111111221 22 23233332 333 67888888999999999876655543
Q ss_pred -cCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCC--CCEEEEEECCCC---CeEEEEEec-CCCcE
Q 014934 331 -EHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTG--SQVCNLVWSKNV---NELVSTHGY-SQNQI 403 (415)
Q Consensus 331 -~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~--~~V~~l~~s~~~---~~l~s~~g~-~dg~I 403 (415)
...+.|++++.+|.+.++ +.| +..|.+.+||++-+.++....+. .++..+..++-. ...+++ |. ..|.|
T Consensus 1192 ~~~hG~vTSi~idp~~~Wl-viG--ts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~-~~~~~nev 1267 (1431)
T KOG1240|consen 1192 QLRHGLVTSIVIDPWCNWL-VIG--TSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSA-GSSSNNEV 1267 (1431)
T ss_pred CccccceeEEEecCCceEE-EEe--cCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEe-cccCCCce
Confidence 455789999999999844 444 48999999999999998888754 567777666643 455554 44 78899
Q ss_pred EEEECCCCc
Q 014934 404 IVWRYPTMS 412 (415)
Q Consensus 404 ~vw~~~s~~ 412 (415)
.+|++.++.
T Consensus 1268 s~wn~~~g~ 1276 (1431)
T KOG1240|consen 1268 STWNMETGL 1276 (1431)
T ss_pred eeeecccCc
Confidence 999998764
No 242
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.35 E-value=3.2e-11 Score=123.95 Aligned_cols=192 Identities=21% Similarity=0.293 Sum_probs=152.4
Q ss_pred CCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEecCCCccEE-------EEEeeCCEEEEEeCCCcEEEEECCCCC
Q 014934 209 DSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVG-------ALAWSSSLLSSGSRDKSILQRDIRAQE 281 (415)
Q Consensus 209 ~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~-------~l~~~~~~l~sgs~dg~I~iwd~~~~~ 281 (415)
+.|....+..+.+.++.++.+..+-+||...+.....+. +..++. ...+.+-++++|+.-+.|.+|+....+
T Consensus 88 ~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~-~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn 166 (967)
T KOG0974|consen 88 DWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQ-SDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDN 166 (967)
T ss_pred ccccccchhhhcceEEEEEcCceEEEEecccCceehhcC-CCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccC
Confidence 455556666678889999999999999998776665554 222221 112224589999999999999998554
Q ss_pred ccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeE-EeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeE
Q 014934 282 DFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVL-KYCEHTAAVKAIAWSPHLHGLLASGGGTADRCI 360 (415)
Q Consensus 282 ~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~-~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I 360 (415)
. ...+.+|.+.|..+.|+-||+++++.+.|..+++|++.+.+... ..-+|.+.|..++|.|. .++++| +|.+.
T Consensus 167 ~-p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n---~i~t~g--edctc 240 (967)
T KOG0974|consen 167 K-PIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN---RIITVG--EDCTC 240 (967)
T ss_pred C-cceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc---eeEEec--cceEE
Confidence 3 33688999999999999999999999999999999999987665 44589999999999998 666776 89999
Q ss_pred EEEECCCCcEEEEee--CCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCC
Q 014934 361 RFWNTTTNTHLSCMD--TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPT 410 (415)
Q Consensus 361 ~iwd~~t~~~~~~~~--~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s 410 (415)
++|+.. ++.+..++ .+..+..++..++...+++ +..|+.+++|++..
T Consensus 241 rvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT--~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 241 RVWGVN-GTQLEVYDEHSGKGIWKIAVPIGVIIKVT--GGNDSTLKLWDLNG 289 (967)
T ss_pred EEEecc-cceehhhhhhhhcceeEEEEcCCceEEEe--eccCcchhhhhhhc
Confidence 999654 55555554 3567999999999888888 78999999999864
No 243
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.34 E-value=2.9e-11 Score=117.01 Aligned_cols=183 Identities=21% Similarity=0.337 Sum_probs=146.2
Q ss_pred CcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEec------CCCc
Q 014934 178 HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTME------GHRL 251 (415)
Q Consensus 178 ~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~------~h~~ 251 (415)
..++.+|.+..||-+|++.|....-+.. ..+.+.+|..++...+|++|+.+|.|..||..+...+.++. .|.+
T Consensus 146 cDly~~gsg~evYRlNLEqGrfL~P~~~-~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg 224 (703)
T KOG2321|consen 146 CDLYLVGSGSEVYRLNLEQGRFLNPFET-DSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPG 224 (703)
T ss_pred ccEEEeecCcceEEEEcccccccccccc-ccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCcc
Confidence 5688888899999999999998877763 35889999999999999999999999999998766655553 2333
Q ss_pred -----cEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCC--CCEEEEEeCCCcEEEEECCC
Q 014934 252 -----RVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYD--NRELASGGNDNRLFVWNQHS 322 (415)
Q Consensus 252 -----~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd--g~~lasg~~dg~I~iwd~~~ 322 (415)
.|+++.|+ |=.+++|+.+|.++|||+|+....+..-++..-+|..+.|.+. ++.+++. ....++|||-.+
T Consensus 225 ~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~ 303 (703)
T KOG2321|consen 225 GDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECT 303 (703)
T ss_pred ccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEec-chHHhhhccccc
Confidence 49999998 4579999999999999999998666665666778999999875 3445554 346799999999
Q ss_pred CceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECC
Q 014934 323 TQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTT 366 (415)
Q Consensus 323 ~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~ 366 (415)
|++...++ ....++.+|+-|++. ++.++. .+..+..|=+.
T Consensus 304 Gk~~asiE-pt~~lND~C~~p~sG-m~f~An--e~~~m~~yyiP 343 (703)
T KOG2321|consen 304 GKPMASIE-PTSDLNDFCFVPGSG-MFFTAN--ESSKMHTYYIP 343 (703)
T ss_pred CCceeecc-ccCCcCceeeecCCc-eEEEec--CCCcceeEEcc
Confidence 99988885 455699999999876 666664 56666666554
No 244
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.34 E-value=3.1e-09 Score=101.63 Aligned_cols=226 Identities=12% Similarity=0.081 Sum_probs=152.2
Q ss_pred CCeEEEEECCCCCeEEeEecCCC------CCeEEEEEcCCCCeEEEEE-C-CCcEEEEECCCCeeeEEecCCCccEEEEE
Q 014934 186 GNCVYLWNACSSKVTKLCDLGID------DSVCSVGWANRNTHLAVGT-S-HGKVQIWDASRCKRVRTMEGHRLRVGALA 257 (415)
Q Consensus 186 d~~V~iwd~~~~~~~~~~~~~~~------~~V~~v~~sp~g~~la~g~-~-dg~V~iwd~~~~~~~~~l~~h~~~V~~l~ 257 (415)
++.|.+||..+.+....+.++.. .....++++|||++|.+.. . +..|.+.|+.+++.+..+.- .....-+.
T Consensus 76 ~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v-p~~~~vy~ 154 (352)
T TIGR02658 76 TDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV-PDCYHIFP 154 (352)
T ss_pred CCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC-CCCcEEEE
Confidence 47899999999999888875422 2344789999999999876 3 68899999999999988774 22333333
Q ss_pred eeCCEEEEEeCCCcEEEEECCCCCccE-E---EeccccCCeE-EEEEeC-CCCEEEEEeCCCcEEEEECCCC-----cee
Q 014934 258 WSSSLLSSGSRDKSILQRDIRAQEDFV-S---KLSGHKSEVC-GLKWSY-DNRELASGGNDNRLFVWNQHST-----QPV 326 (415)
Q Consensus 258 ~~~~~l~sgs~dg~I~iwd~~~~~~~~-~---~~~~h~~~V~-~l~~sp-dg~~lasg~~dg~I~iwd~~~~-----~~~ 326 (415)
.+...+..-+.||......+....+.. . .+..-...+. .-.+.+ +|+++.+... |.|++.|+... +.+
T Consensus 155 t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~ 233 (352)
T TIGR02658 155 TANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAI 233 (352)
T ss_pred ecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceeccee
Confidence 334344444566666555444333211 0 1111000000 003455 8888777666 99999996443 223
Q ss_pred EEecc-------CCCcEEEEEEcCCCCcEEEEEcC-------CCCCeEEEEECCCCcEEEEeeCCCCEEEEEECCCCC-e
Q 014934 327 LKYCE-------HTAAVKAIAWSPHLHGLLASGGG-------TADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVN-E 391 (415)
Q Consensus 327 ~~~~~-------h~~~V~~l~~sp~~~~llasggg-------~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~-~ 391 (415)
..+.. ..+...-++++|+++.+++...+ ...+.|.++|+.+++.+..+..+..+.++++++|++ .
T Consensus 234 ~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~ 313 (352)
T TIGR02658 234 EAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPL 313 (352)
T ss_pred eeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeE
Confidence 22211 22344559999999988885421 012689999999999999999999999999999999 7
Q ss_pred EEEEEecCCCcEEEEECCCCccc
Q 014934 392 LVSTHGYSQNQIIVWRYPTMSKV 414 (415)
Q Consensus 392 l~s~~g~~dg~I~vw~~~s~~~l 414 (415)
|+++. ..++.|.++|..+++.+
T Consensus 314 lyvtn-~~s~~VsViD~~t~k~i 335 (352)
T TIGR02658 314 LYALS-TGDKTLYIFDAETGKEL 335 (352)
T ss_pred EEEeC-CCCCcEEEEECcCCeEE
Confidence 77653 35788999999988653
No 245
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.33 E-value=1.3e-10 Score=106.34 Aligned_cols=186 Identities=23% Similarity=0.390 Sum_probs=140.2
Q ss_pred CcEEEEEcCCeEEEEECC-CCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCC----CeeeEEecCCCcc
Q 014934 178 HNVLAVGLGNCVYLWNAC-SSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASR----CKRVRTMEGHRLR 252 (415)
Q Consensus 178 ~~~la~~~d~~V~iwd~~-~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~----~~~~~~l~~h~~~ 252 (415)
..++.++.|.+++||--. .++.-..+......+++++.+.++...|++|-..|++.-+.+.. ....+....|..+
T Consensus 37 ~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~ 116 (404)
T KOG1409|consen 37 EGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQAR 116 (404)
T ss_pred CCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcc
Confidence 567888889999999543 34433333223468899999999999999999999999887643 3445566678899
Q ss_pred EEEEEee--CCEEEEEeCCCcEEEEECCCC----------------------------------------CccEEEeccc
Q 014934 253 VGALAWS--SSLLSSGSRDKSILQRDIRAQ----------------------------------------EDFVSKLSGH 290 (415)
Q Consensus 253 V~~l~~~--~~~l~sgs~dg~I~iwd~~~~----------------------------------------~~~~~~~~~h 290 (415)
|..+.|+ +..+++.+.|..+.-.-.+.+ -.++..+.+|
T Consensus 117 v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h 196 (404)
T KOG1409|consen 117 VSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGH 196 (404)
T ss_pred eeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCc
Confidence 9988887 567777777665432211111 1245667899
Q ss_pred cCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCce-eEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECC
Q 014934 291 KSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQP-VLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTT 366 (415)
Q Consensus 291 ~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~-~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~ 366 (415)
...+.+++|.+....|.+|..|..+.+||+--.+- ...+.+|...|..+...+.-..+++.+ .|+.|.+||+.
T Consensus 197 ~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~---edg~i~~w~mn 270 (404)
T KOG1409|consen 197 TGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCG---EDGGIVVWNMN 270 (404)
T ss_pred ccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeecc---CCCeEEEEecc
Confidence 99999999999999999999999999999865433 456678999999998888776555544 79999999986
No 246
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.33 E-value=2.1e-10 Score=111.72 Aligned_cols=186 Identities=19% Similarity=0.269 Sum_probs=153.4
Q ss_pred CCCCeEEEEECCCcEEEEECCCCeeeEEecC---CCccEEEEEee------C----------------CEEEEEeCCCcE
Q 014934 218 NRNTHLAVGTSHGKVQIWDASRCKRVRTMEG---HRLRVGALAWS------S----------------SLLSSGSRDKSI 272 (415)
Q Consensus 218 p~g~~la~g~~dg~V~iwd~~~~~~~~~l~~---h~~~V~~l~~~------~----------------~~l~sgs~dg~I 272 (415)
|-+.++|..+.||.++|||...++....+.. -.+..++..|. + ..++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 4567899999999999999998887766642 24556667664 1 257888899999
Q ss_pred EEEECCCCCccEEEe--ccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEE
Q 014934 273 LQRDIRAQEDFVSKL--SGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLA 350 (415)
Q Consensus 273 ~iwd~~~~~~~~~~~--~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~lla 350 (415)
.+|++..++ ...++ ..|.+.|.++.|+.+-..|.+++.|+.+..|+....+.+..+.+.+..+..++.+||+. +++
T Consensus 83 ~~ys~~~g~-it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~-~l~ 160 (541)
T KOG4547|consen 83 LLYSVAGGE-ITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGK-ILL 160 (541)
T ss_pred EEEEecCCe-EEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCC-EEE
Confidence 999999887 33333 47999999999999999999999999999999999999999999999999999999987 666
Q ss_pred EEcCCCCCeEEEEECCCCcEEEEee-CCCCEEEEEECCC-----CCeEEEEEecCCCcEEEEECCC
Q 014934 351 SGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKN-----VNELVSTHGYSQNQIIVWRYPT 410 (415)
Q Consensus 351 sggg~~d~~I~iwd~~t~~~~~~~~-~~~~V~~l~~s~~-----~~~l~s~~g~~dg~I~vw~~~s 410 (415)
+++ +.|++||+++++.+..+. |.++|.+++|..+ |.+++++.+ .+.-|.+|....
T Consensus 161 ~as----~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~-~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 161 TAS----RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAA-AERGITVWVVEK 221 (541)
T ss_pred ecc----ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccc-cccceeEEEEEc
Confidence 654 899999999999999886 6788999999887 788887533 455678887654
No 247
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.32 E-value=4.8e-11 Score=122.68 Aligned_cols=182 Identities=20% Similarity=0.305 Sum_probs=144.6
Q ss_pred CcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCe-----EEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEecCCCcc
Q 014934 178 HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSV-----CSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLR 252 (415)
Q Consensus 178 ~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V-----~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~~~ 252 (415)
.++..+..++.+.+|+...+.+..... +...+ .-+-++++.-++++|+.-|.|.+|+....+.-..+.+|.+.
T Consensus 100 k~i~l~~~~ns~~i~d~~~~~~~~~i~--~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~ 177 (967)
T KOG0974|consen 100 KKIALVTSRNSLLIRDSKNSSVLSKIQ--SDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGS 177 (967)
T ss_pred ceEEEEEcCceEEEEecccCceehhcC--CCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceecccCCc
Confidence 455555578899999988776554442 32222 22334566679999999999999998744333368899999
Q ss_pred EEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEec
Q 014934 253 VGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYC 330 (415)
Q Consensus 253 V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~ 330 (415)
|..+.|+ +.++++.|.|+++++|++.+.+.......+|...|..++|.|+ .+++++.|-+.++|+.. +..+..+.
T Consensus 178 iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~-~~~l~~y~ 254 (967)
T KOG0974|consen 178 IFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVN-GTQLEVYD 254 (967)
T ss_pred eEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEecc-cceehhhh
Confidence 9999995 8999999999999999999988655577899999999999988 99999999999999764 44555888
Q ss_pred cCCC-cEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCC
Q 014934 331 EHTA-AVKAIAWSPHLHGLLASGGGTADRCIRFWNTTT 367 (415)
Q Consensus 331 ~h~~-~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t 367 (415)
+|.. .+..++..+... ++++++ .|+.+++|++..
T Consensus 255 ~h~g~~iw~~~~~~~~~-~~vT~g--~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 255 EHSGKGIWKIAVPIGVI-IKVTGG--NDSTLKLWDLNG 289 (967)
T ss_pred hhhhcceeEEEEcCCce-EEEeec--cCcchhhhhhhc
Confidence 8864 588899888765 777776 899999999865
No 248
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.31 E-value=5.7e-10 Score=111.12 Aligned_cols=208 Identities=14% Similarity=0.158 Sum_probs=135.0
Q ss_pred eeEeecCC-CcEEEEEc-C---CeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEE-ECCC--cEEEEECCCCe
Q 014934 170 LNLVDWSS-HNVLAVGL-G---NCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVG-TSHG--KVQIWDASRCK 241 (415)
Q Consensus 170 i~~l~ws~-~~~la~~~-d---~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g-~~dg--~V~iwd~~~~~ 241 (415)
+...+|+| ++.|+... + ..|++|++.+++...+.. +...+.+++|+|||+.|+.. ..+| .|.+||+.+++
T Consensus 192 ~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~--~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~ 269 (417)
T TIGR02800 192 ILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVAS--FPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQ 269 (417)
T ss_pred eecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeec--CCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCC
Confidence 45667999 77777663 2 479999999987665543 44567789999999987754 3344 58888988765
Q ss_pred eeEEecCCCccEEEEEee--CCEEEEEeC-CC--cEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCC---
Q 014934 242 RVRTMEGHRLRVGALAWS--SSLLSSGSR-DK--SILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDN--- 313 (415)
Q Consensus 242 ~~~~l~~h~~~V~~l~~~--~~~l~sgs~-dg--~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg--- 313 (415)
. ..+..+........|+ ++.|+..+. ++ .|+++|+..+. ...+..+...+..+.|+|+|++|+.++.++
T Consensus 270 ~-~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~--~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~ 346 (417)
T TIGR02800 270 L-TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE--VRRLTFRGGYNASPSWSPDGDLIAFVHREGGGF 346 (417)
T ss_pred E-EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC--EEEeecCCCCccCeEECCCCCEEEEEEccCCce
Confidence 4 3344454445566776 456655543 43 58888887665 334444556677889999999999988776
Q ss_pred cEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeC-CCCEEEEEE
Q 014934 314 RLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDT-GSQVCNLVW 385 (415)
Q Consensus 314 ~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~-~~~V~~l~~ 385 (415)
.|.+||+.++.. ..+... .......|+|+++.++++........+.+.+.. |.....+.. ...+..+.|
T Consensus 347 ~i~~~d~~~~~~-~~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~g~~~~~~w 416 (417)
T TIGR02800 347 NIAVMDLDGGGE-RVLTDT-GLDESPSFAPNGRMILYATTRGGRGVLGLVSTD-GRFRARLPLGNGDVREPAW 416 (417)
T ss_pred EEEEEeCCCCCe-EEccCC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEECC-CceeeECCCCCCCcCCCCC
Confidence 899999987644 333222 234556899999977776642112346666643 444444432 234444444
No 249
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.31 E-value=9e-10 Score=110.26 Aligned_cols=212 Identities=11% Similarity=0.117 Sum_probs=136.0
Q ss_pred ceeEeecCC-CcEEEEEc-C---CeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEE-ECCC--cEEEEECCCC
Q 014934 169 YLNLVDWSS-HNVLAVGL-G---NCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVG-TSHG--KVQIWDASRC 240 (415)
Q Consensus 169 ~i~~l~ws~-~~~la~~~-d---~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g-~~dg--~V~iwd~~~~ 240 (415)
.+....|+| ++.|+... + ..|++|++.+++...+.. ..+.+....|+|||++|+.. ..+| .|.+||+.++
T Consensus 200 ~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~--~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~ 277 (430)
T PRK00178 200 PILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITN--FEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASR 277 (430)
T ss_pred ceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccC--CCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCC
Confidence 356779999 66666653 2 369999999988766543 23456678999999988754 4455 5888899876
Q ss_pred eeeEEecCCCccEEEEEee--CCEEEEEe-CCC--cEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCC-C-
Q 014934 241 KRVRTMEGHRLRVGALAWS--SSLLSSGS-RDK--SILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGND-N- 313 (415)
Q Consensus 241 ~~~~~l~~h~~~V~~l~~~--~~~l~sgs-~dg--~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~d-g- 313 (415)
+.. .+..+........|+ ++.|+..+ .+| .|+++|+.++.. ..+...........|+|||+.|+..+.+ +
T Consensus 278 ~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~--~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~ 354 (430)
T PRK00178 278 QLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRA--ERVTFVGNYNARPRLSADGKTLVMVHRQDGN 354 (430)
T ss_pred CeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCE--EEeecCCCCccceEECCCCCEEEEEEccCCc
Confidence 543 455555556677887 45555444 444 577788876652 2222122234457899999999877643 2
Q ss_pred -cEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee-CCCCEEEEEECCC
Q 014934 314 -RLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKN 388 (415)
Q Consensus 314 -~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~-~~~~V~~l~~s~~ 388 (415)
.|.+||+.+++.. .+.. ........|+|+|+.++.+........|.++++..+ ....+. ....+...+|+|-
T Consensus 355 ~~l~~~dl~tg~~~-~lt~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~-~~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 355 FHVAAQDLQRGSVR-ILTD-TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGR-VRLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred eEEEEEECCCCCEE-EccC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC-ceEECcCCCCCcCCCccCCC
Confidence 5889999887643 3322 222335689999998877764112345777787543 333343 3355667778764
No 250
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.30 E-value=6.1e-10 Score=101.42 Aligned_cols=233 Identities=17% Similarity=0.255 Sum_probs=155.4
Q ss_pred eeEeecCC-C-cEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeE-EEEECCCcEEEEECCCCeeeEE
Q 014934 170 LNLVDWSS-H-NVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHL-AVGTSHGKVQIWDASRCKRVRT 245 (415)
Q Consensus 170 i~~l~ws~-~-~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~l-a~g~~dg~V~iwd~~~~~~~~~ 245 (415)
|.-+.|.. . .+|.+. .++.|.+|++...+....++ ...+.+.+++|+|||++| .+...+-.|.+|.+.+.+...
T Consensus 51 i~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckId-eg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~- 128 (447)
T KOG4497|consen 51 IVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKID-EGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL- 128 (447)
T ss_pred hhheeeeccceeeeeeeeccceEEEEEeecceeEEEec-cCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE-
Confidence 44567776 2 344444 46799999999888877776 446789999999999655 455568899999998765443
Q ss_pred ecCCCccEEEEEee--CCEEEEEeC------------------------------------CCcEEEEECCCCCccEEEe
Q 014934 246 MEGHRLRVGALAWS--SSLLSSGSR------------------------------------DKSILQRDIRAQEDFVSKL 287 (415)
Q Consensus 246 l~~h~~~V~~l~~~--~~~l~sgs~------------------------------------dg~I~iwd~~~~~~~~~~~ 287 (415)
+.-....+..++|+ +++.+.+++ +..+.+||---.-+ +. .
T Consensus 129 ~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leyk-v~-a 206 (447)
T KOG4497|consen 129 LPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYK-VY-A 206 (447)
T ss_pred ecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhhe-ee-e
Confidence 22223345666666 344333322 12345555322211 11 1
Q ss_pred ccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCce------------------------------------------
Q 014934 288 SGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQP------------------------------------------ 325 (415)
Q Consensus 288 ~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~------------------------------------------ 325 (415)
..-.-.+..++|+|.+++||+|+.|+.++|.+--+.++
T Consensus 207 Ye~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a 286 (447)
T KOG4497|consen 207 YERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEA 286 (447)
T ss_pred eeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCcccc
Confidence 11235688999999999999999999998866322110
Q ss_pred ------------------eEEec------cCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCCCEE
Q 014934 326 ------------------VLKYC------EHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVC 381 (415)
Q Consensus 326 ------------------~~~~~------~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~~V~ 381 (415)
+++++ ...-.+.-++|++|.. .+++-....-+.+-+||++.-+....+....+|.
T Consensus 287 ~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~-y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~pir 365 (447)
T KOG4497|consen 287 HIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDST-YAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIR 365 (447)
T ss_pred CccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCce-EEeeecCCCCceEEEEechhhhhhhhhhhcccee
Confidence 11111 1123466799999975 6676654456789999999887766666788999
Q ss_pred EEEECCCCCeEEEEEecCCCcEEEEECC
Q 014934 382 NLVWSKNVNELVSTHGYSQNQIIVWRYP 409 (415)
Q Consensus 382 ~l~~s~~~~~l~s~~g~~dg~I~vw~~~ 409 (415)
...|+|....|+.+.|. ..+++|...
T Consensus 366 af~WdP~~prL~vctg~--srLY~W~ps 391 (447)
T KOG4497|consen 366 AFEWDPGRPRLVVCTGK--SRLYFWAPS 391 (447)
T ss_pred EEEeCCCCceEEEEcCC--ceEEEEcCC
Confidence 99999999999886664 368888753
No 251
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.29 E-value=4e-10 Score=101.23 Aligned_cols=202 Identities=19% Similarity=0.231 Sum_probs=150.5
Q ss_pred CeEEEEECCCCCeEEeEec--CCCCCeEEEEEcC---CCC-eEEEEECCCcEEEEECCCCeeeEEecCCC---c---cEE
Q 014934 187 NCVYLWNACSSKVTKLCDL--GIDDSVCSVGWAN---RNT-HLAVGTSHGKVQIWDASRCKRVRTMEGHR---L---RVG 254 (415)
Q Consensus 187 ~~V~iwd~~~~~~~~~~~~--~~~~~V~~v~~sp---~g~-~la~g~~dg~V~iwd~~~~~~~~~l~~h~---~---~V~ 254 (415)
|.+++|++.+.+...+..+ .....+..+.|.- +|. .++.+...|.|.++..........+++-. - ...
T Consensus 46 Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~l 125 (339)
T KOG0280|consen 46 GKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEAL 125 (339)
T ss_pred cceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeee
Confidence 5688998877665442222 2356788888874 455 56777889999999876544444444321 1 234
Q ss_pred EEEee--CCEEEEEeCCCcEEEEECCCCC-ccEEEeccccCCeEEEEEeC-CCCEEEEEeCCCcEEEEECC-CCceeEE-
Q 014934 255 ALAWS--SSLLSSGSRDKSILQRDIRAQE-DFVSKLSGHKSEVCGLKWSY-DNRELASGGNDNRLFVWNQH-STQPVLK- 328 (415)
Q Consensus 255 ~l~~~--~~~l~sgs~dg~I~iwd~~~~~-~~~~~~~~h~~~V~~l~~sp-dg~~lasg~~dg~I~iwd~~-~~~~~~~- 328 (415)
++.|+ +..++++..+|.+.+-+..... +.++.++.|..+++..+|+- +.+++.+|+.|+.+..||++ .++.+.+
T Consensus 126 slD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n 205 (339)
T KOG0280|consen 126 SLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHN 205 (339)
T ss_pred EEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeec
Confidence 56666 5789999999999855544332 22457889999999999985 55788999999999999999 3444444
Q ss_pred eccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECC-CCcEEEEeeCCCCEEEEEECCCCC
Q 014934 329 YCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTT-TNTHLSCMDTGSQVCNLVWSKNVN 390 (415)
Q Consensus 329 ~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~-t~~~~~~~~~~~~V~~l~~s~~~~ 390 (415)
.+-|...|.+|.-+|.....+++|+ .|.+|++||++ -++++..-..++.|+.+.++|...
T Consensus 206 ~kvH~~GV~SI~ss~~~~~~I~TGs--YDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~ 266 (339)
T KOG0280|consen 206 SKVHTSGVVSIYSSPPKPTYIATGS--YDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIF 266 (339)
T ss_pred ceeeecceEEEecCCCCCceEEEec--cccceeeeehhcccCccccCccccceEEEEecchhh
Confidence 4569999999999998888999988 99999999999 588888877889999999998643
No 252
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.28 E-value=1.3e-08 Score=98.75 Aligned_cols=236 Identities=16% Similarity=0.122 Sum_probs=155.7
Q ss_pred eEeecCC-CcEEEEE-c----CCeEEEEECCC--CCeEEeEecC-CCCCeEEEEEcCCCCeEEEEEC-CCcEEEEECCC-
Q 014934 171 NLVDWSS-HNVLAVG-L----GNCVYLWNACS--SKVTKLCDLG-IDDSVCSVGWANRNTHLAVGTS-HGKVQIWDASR- 239 (415)
Q Consensus 171 ~~l~ws~-~~~la~~-~----d~~V~iwd~~~--~~~~~~~~~~-~~~~V~~v~~sp~g~~la~g~~-dg~V~iwd~~~- 239 (415)
..+.+++ +++|.+. . ++.|..|.+.. +++..+-... .....+.++++|++++|+++.. +|.|.++++..
T Consensus 40 s~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~ 119 (345)
T PF10282_consen 40 SWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDD 119 (345)
T ss_dssp CCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred ceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCC
Confidence 3456777 5555555 3 35787777655 4554444332 3456788999999999999875 89999999976
Q ss_pred CeeeEE---ec----------CCCccEEEEEeeC--CEEEEEe-CCCcEEEEECCCCCccEE---Ee-ccccCCeEEEEE
Q 014934 240 CKRVRT---ME----------GHRLRVGALAWSS--SLLSSGS-RDKSILQRDIRAQEDFVS---KL-SGHKSEVCGLKW 299 (415)
Q Consensus 240 ~~~~~~---l~----------~h~~~V~~l~~~~--~~l~sgs-~dg~I~iwd~~~~~~~~~---~~-~~h~~~V~~l~~ 299 (415)
+..... +. .......++.+++ +++++.. ....|.+|++......+. .+ ......-..+.|
T Consensus 120 g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f 199 (345)
T PF10282_consen 120 GSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAF 199 (345)
T ss_dssp SEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE
T ss_pred cccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEE
Confidence 332222 21 1234577888884 5666554 345799999976652221 12 234456889999
Q ss_pred eCCCCEEEEEe-CCCcEEEEECC--CCc--eeEEecc----C--CCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECC--
Q 014934 300 SYDNRELASGG-NDNRLFVWNQH--STQ--PVLKYCE----H--TAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTT-- 366 (415)
Q Consensus 300 spdg~~lasg~-~dg~I~iwd~~--~~~--~~~~~~~----h--~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~-- 366 (415)
+|+++++.+.. .++.|.++++. ++. .+..+.. . ......|+++|+|++|+++.- ....|.+|++.
T Consensus 200 ~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr--~~~sI~vf~~d~~ 277 (345)
T PF10282_consen 200 SPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNR--GSNSISVFDLDPA 277 (345)
T ss_dssp -TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEEC--TTTEEEEEEECTT
T ss_pred cCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEec--cCCEEEEEEEecC
Confidence 99999886654 57889999987 432 2222221 1 125789999999999999886 58899999993
Q ss_pred CCc--EEEEeeC-CCCEEEEEECCCCCeEEEEEecCCCcEEEEECC
Q 014934 367 TNT--HLSCMDT-GSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYP 409 (415)
Q Consensus 367 t~~--~~~~~~~-~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~ 409 (415)
+|+ .+..+.. +.....+.++|+|++|+++ ...++.|.+|++.
T Consensus 278 ~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va-~~~s~~v~vf~~d 322 (345)
T PF10282_consen 278 TGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVA-NQDSNTVSVFDID 322 (345)
T ss_dssp TTTEEEEEEEEESSSSEEEEEE-TTSSEEEEE-ETTTTEEEEEEEE
T ss_pred CCceEEEEEEeCCCCCccEEEEeCCCCEEEEE-ecCCCeEEEEEEe
Confidence 343 3344444 5668999999999999986 4577899999874
No 253
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.27 E-value=2.5e-11 Score=130.17 Aligned_cols=192 Identities=13% Similarity=0.196 Sum_probs=155.8
Q ss_pred eeEeecCC--CcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEec
Q 014934 170 LNLVDWSS--HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTME 247 (415)
Q Consensus 170 i~~l~ws~--~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~ 247 (415)
+.++.=+| ..+|..+.||.|++|....++.+..........|+.+.|+.+|+.+.++..||.+-+|.+. .+.....+
T Consensus 2211 v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~q 2289 (2439)
T KOG1064|consen 2211 VRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQ 2289 (2439)
T ss_pred eeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-Ccceeccc
Confidence 44555566 3466777899999999988887777665445899999999999999999999999999987 56677778
Q ss_pred CCCccEEEEEeeCCEEEEEe---CCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCc
Q 014934 248 GHRLRVGALAWSSSLLSSGS---RDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQ 324 (415)
Q Consensus 248 ~h~~~V~~l~~~~~~l~sgs---~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~ 324 (415)
.|.....++.|-+..+++++ .++.+.+||.--.......-..|.+.++++++-|..++|++||.+|.|++||++..+
T Consensus 2290 chnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrq 2369 (2439)
T KOG1064|consen 2290 CHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQ 2369 (2439)
T ss_pred cCCccccceeeeehhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHH
Confidence 89999999999887777765 468899999765432222237899999999999999999999999999999999988
Q ss_pred eeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee
Q 014934 325 PVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD 375 (415)
Q Consensus 325 ~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~ 375 (415)
.++++.. +. .+..+++|+ ..|.|+||++..-..++.+.
T Consensus 2370 l~h~~~~---------~~--~~~~f~~~s--s~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2370 LRHTFQA---------LD--TREYFVTGS--SEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred HHHHhhh---------hh--hhheeeccC--cccceEEEEccccchhhcCc
Confidence 8877754 34 344777776 89999999999887777664
No 254
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.26 E-value=1.3e-09 Score=109.32 Aligned_cols=210 Identities=13% Similarity=0.113 Sum_probs=135.0
Q ss_pred ceeEeecCC-CcEEEEEc--C--CeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEE-ECCCc--EEEEECCCC
Q 014934 169 YLNLVDWSS-HNVLAVGL--G--NCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVG-TSHGK--VQIWDASRC 240 (415)
Q Consensus 169 ~i~~l~ws~-~~~la~~~--d--~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g-~~dg~--V~iwd~~~~ 240 (415)
.+....|+| ++.|+... + ..|++||+.+++...+... .+......|+|||+.|+.. ..+|. |.++|+.++
T Consensus 219 ~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~--~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg 296 (448)
T PRK04792 219 PLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSF--PGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATK 296 (448)
T ss_pred cccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCC--CCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCC
Confidence 456778999 66666653 2 3699999999887655432 3345578999999988764 55665 777788776
Q ss_pred eeeEEecCCCccEEEEEee--CCEEEE-EeCCC--cEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCC-C-
Q 014934 241 KRVRTMEGHRLRVGALAWS--SSLLSS-GSRDK--SILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGND-N- 313 (415)
Q Consensus 241 ~~~~~l~~h~~~V~~l~~~--~~~l~s-gs~dg--~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~d-g- 313 (415)
+. ..+..+.......+|+ ++.|+. ...++ .|+++|+.+++ ...+..........+|+|||++|+..+.+ +
T Consensus 297 ~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~--~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~ 373 (448)
T PRK04792 297 AL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGK--VSRLTFEGEQNLGGSITPDGRSMIMVNRTNGK 373 (448)
T ss_pred Ce-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC--EEEEecCCCCCcCeeECCCCCEEEEEEecCCc
Confidence 54 4455555566778888 345544 43444 47777877665 22232222234457899999998876553 3
Q ss_pred -cEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCC--eEEEEECCCCcEEEEeeC-CCCEEEEEECCC
Q 014934 314 -RLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADR--CIRFWNTTTNTHLSCMDT-GSQVCNLVWSKN 388 (415)
Q Consensus 314 -~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~--~I~iwd~~t~~~~~~~~~-~~~V~~l~~s~~ 388 (415)
.|.++|+.+++.. .+.... ......|+|+|+.++.+.. .++ .|.+++. +|.....+.. ...+...+|+|-
T Consensus 374 ~~I~~~dl~~g~~~-~lt~~~-~d~~ps~spdG~~I~~~~~--~~g~~~l~~~~~-~G~~~~~l~~~~g~~~~p~Wsp~ 447 (448)
T PRK04792 374 FNIARQDLETGAMQ-VLTSTR-LDESPSVAPNGTMVIYSTT--YQGKQVLAAVSI-DGRFKARLPAGQGEVKSPAWSPF 447 (448)
T ss_pred eEEEEEECCCCCeE-EccCCC-CCCCceECCCCCEEEEEEe--cCCceEEEEEEC-CCCceEECcCCCCCcCCCccCCC
Confidence 4677888877643 332221 2234589999998777664 333 4778887 4555555543 456777888873
No 255
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.25 E-value=9.3e-10 Score=110.06 Aligned_cols=234 Identities=15% Similarity=0.181 Sum_probs=175.7
Q ss_pred eeEeecCCCcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCC------------CeEEEEECCCcEEEEEC
Q 014934 170 LNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRN------------THLAVGTSHGKVQIWDA 237 (415)
Q Consensus 170 i~~l~ws~~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g------------~~la~g~~dg~V~iwd~ 237 (415)
.+.++|+++.+||.|+...|.+.|..+-+.++.++ .|...|+.|.|.|.. -+||++...|.|.+||.
T Consensus 18 ~~A~Dw~~~GLiAygshslV~VVDs~s~q~iqsie-~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~ 96 (1062)
T KOG1912|consen 18 RNAADWSPSGLIAYGSHSLVSVVDSRSLQLIQSIE-LHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDF 96 (1062)
T ss_pred ccccccCccceEEEecCceEEEEehhhhhhhhccc-cCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEe
Confidence 56889999999999999999999999988888887 577899999998731 25788888999999999
Q ss_pred CCCeeeEEecCCCccEEEEEee------CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeC-CCCEEEEEe
Q 014934 238 SRCKRVRTMEGHRLRVGALAWS------SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSY-DNRELASGG 310 (415)
Q Consensus 238 ~~~~~~~~l~~h~~~V~~l~~~------~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~lasg~ 310 (415)
..+..+..+..|..++..++|- .+.|+.-....+|.+|+..+++.. -+.........|+.+.| |.+.|..-+
T Consensus 97 ~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~-Wk~~ys~~iLs~f~~DPfd~rh~~~l~ 175 (1062)
T KOG1912|consen 97 VLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKF-WKYDYSHEILSCFRVDPFDSRHFCVLG 175 (1062)
T ss_pred hhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCcee-eccccCCcceeeeeeCCCCcceEEEEc
Confidence 9998888899999999999996 267888888899999999999853 33333334567789988 777787777
Q ss_pred CCCcEEEEECCC-------CceeEEeccCCC-------------------------cEEEEEEcCCCCcEEEEEcCCCCC
Q 014934 311 NDNRLFVWNQHS-------TQPVLKYCEHTA-------------------------AVKAIAWSPHLHGLLASGGGTADR 358 (415)
Q Consensus 311 ~dg~I~iwd~~~-------~~~~~~~~~h~~-------------------------~V~~l~~sp~~~~llasggg~~d~ 358 (415)
..|.|.+-+.-. ++..+.-..|.. ....++|+|.-++++... ..+
T Consensus 176 s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~---~pr 252 (1062)
T KOG1912|consen 176 SKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFIT---FPR 252 (1062)
T ss_pred cCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEE---ecc
Confidence 778877776532 222222223222 012357888877666654 589
Q ss_pred eEEEEECCCCcEEEEeeC-CCCEEEEEECCCC--CeEEEEEecCCCcEEEEECCC
Q 014934 359 CIRFWNTTTNTHLSCMDT-GSQVCNLVWSKNV--NELVSTHGYSQNQIIVWRYPT 410 (415)
Q Consensus 359 ~I~iwd~~t~~~~~~~~~-~~~V~~l~~s~~~--~~l~s~~g~~dg~I~vw~~~s 410 (415)
.+.++|++-..++..+.- .+.+.-+.|-|++ ..|.+ +-.||.+.+|--+.
T Consensus 253 ellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~Lfc--lH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 253 ELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFC--LHSNGRLTIRVRKE 305 (1062)
T ss_pred ceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEE--EecCCeEEEEEeec
Confidence 999999998888887763 3334456666654 56777 55799999997554
No 256
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.21 E-value=1.4e-10 Score=110.39 Aligned_cols=198 Identities=22% Similarity=0.335 Sum_probs=158.4
Q ss_pred CCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEe-cCCCccEEEEEeeC----CEEEEEeCCCcEEEEECCCC
Q 014934 206 GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTM-EGHRLRVGALAWSS----SLLSSGSRDKSILQRDIRAQ 280 (415)
Q Consensus 206 ~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l-~~h~~~V~~l~~~~----~~l~sgs~dg~I~iwd~~~~ 280 (415)
.|.+.|..|.|...|..|++|+.|..|.+||...++.+..+ .+|...|..-.|-| ..+++++.||.+++-.+...
T Consensus 140 ~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t 219 (559)
T KOG1334|consen 140 KHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILET 219 (559)
T ss_pred CCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccc
Confidence 78999999999999999999999999999999888776666 47888888877753 68999999999998876654
Q ss_pred Ccc--EEEeccccCCeEEEEEeCCC-CEEEEEeCCCcEEEEECCCCceeEEec---cCCC---cEEEEEEcCCCCcEEEE
Q 014934 281 EDF--VSKLSGHKSEVCGLKWSYDN-RELASGGNDNRLFVWNQHSTQPVLKYC---EHTA---AVKAIAWSPHLHGLLAS 351 (415)
Q Consensus 281 ~~~--~~~~~~h~~~V~~l~~spdg-~~lasg~~dg~I~iwd~~~~~~~~~~~---~h~~---~V~~l~~sp~~~~llas 351 (415)
..+ ...+..|.+.|..++.-|+. .-|.+++.|+.+.-+|++...+...+. .+.. ...+++..|...+.+++
T Consensus 220 ~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faV 299 (559)
T KOG1334|consen 220 GYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAV 299 (559)
T ss_pred cceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCcccccc
Confidence 422 34566799999999999855 458999999999999999876544432 2333 46789999999999999
Q ss_pred EcCCCCCeEEEEECCCCcE------EEEe-------eCCCCEEEEEECCCCCeEEEEEecCCCcEEEEE
Q 014934 352 GGGTADRCIRFWNTTTNTH------LSCM-------DTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWR 407 (415)
Q Consensus 352 ggg~~d~~I~iwd~~t~~~------~~~~-------~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~ 407 (415)
+| .|..+++||.+.-.. +..+ +..-.|++++|+.++..|++ .+.|-.|+++.
T Consensus 300 gG--~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLa--SYnDe~IYLF~ 364 (559)
T KOG1334|consen 300 GG--SDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLA--SYNDEDIYLFN 364 (559)
T ss_pred CC--hhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceee--eecccceEEec
Confidence 98 999999999875321 1111 12356999999998888888 67888999983
No 257
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.19 E-value=5.8e-08 Score=87.62 Aligned_cols=221 Identities=13% Similarity=0.155 Sum_probs=136.6
Q ss_pred CcEEEEEcCCeEEEEECCCC--CeEEeEec--CCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEecC-----
Q 014934 178 HNVLAVGLGNCVYLWNACSS--KVTKLCDL--GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEG----- 248 (415)
Q Consensus 178 ~~~la~~~d~~V~iwd~~~~--~~~~~~~~--~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~----- 248 (415)
+++||+-.|.+|.|-..++. .++..+.+ +..-.=.-++|+||+..||.+...|+|++||+.... +..+..
T Consensus 9 Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~-lf~I~p~~~~~ 87 (282)
T PF15492_consen 9 GKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSE-LFVIPPAMSFP 87 (282)
T ss_pred CcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccce-eEEcCcccccC
Confidence 88999999999999887764 34444544 223346789999999999999999999999987533 223321
Q ss_pred --CCccEEEEEee--------CCEEEEEeCCCcEEEEECCCC--C--ccEEE--e-ccccCCeEEEEEeCCCCEEEEEeC
Q 014934 249 --HRLRVGALAWS--------SSLLSSGSRDKSILQRDIRAQ--E--DFVSK--L-SGHKSEVCGLKWSYDNRELASGGN 311 (415)
Q Consensus 249 --h~~~V~~l~~~--------~~~l~sgs~dg~I~iwd~~~~--~--~~~~~--~-~~h~~~V~~l~~spdg~~lasg~~ 311 (415)
-...|..|.|- ...|++-..+|.++-|-+..+ + ...+. + ..+...|+++.++|..++|++||.
T Consensus 88 ~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~ 167 (282)
T PF15492_consen 88 GDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGC 167 (282)
T ss_pred CccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEecc
Confidence 23467777774 136777778888877765321 1 11122 2 234678999999999999888775
Q ss_pred CCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEE-EEEcCCCCC------eEEEEECCCCcEEEE-eeCCCCEEEE
Q 014934 312 DNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLL-ASGGGTADR------CIRFWNTTTNTHLSC-MDTGSQVCNL 383 (415)
Q Consensus 312 dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll-asggg~~d~------~I~iwd~~t~~~~~~-~~~~~~V~~l 383 (415)
... ..+ . -+.....+++-..-.+..+.. ++.. .|+ +-.+|.+.+...... -.....|..+
T Consensus 168 ~~~------~~~--~--s~a~~~GLtaWRiL~~~Pyyk~v~~~--~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~km 235 (282)
T PF15492_consen 168 EQN------QDG--M--SKASSCGLTAWRILSDSPYYKQVTSS--EDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKM 235 (282)
T ss_pred CCC------CCc--c--ccccccCceEEEEcCCCCcEEEcccc--CccccccccccceeeccceeeeeccccCCCceEEE
Confidence 432 000 0 001122222222221211111 1111 111 223444443332221 1245679999
Q ss_pred EECCCCCeEEEEEecCCCcEEEEECCCCcc
Q 014934 384 VWSKNVNELVSTHGYSQNQIIVWRYPTMSK 413 (415)
Q Consensus 384 ~~s~~~~~l~s~~g~~dg~I~vw~~~s~~~ 413 (415)
..||||..||+.| .+|.|.+|++|++.+
T Consensus 236 SlSPdg~~La~ih--~sG~lsLW~iPsL~~ 263 (282)
T PF15492_consen 236 SLSPDGSLLACIH--FSGSLSLWEIPSLRL 263 (282)
T ss_pred EECCCCCEEEEEE--cCCeEEEEecCcchh
Confidence 9999999999975 689999999999865
No 258
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.19 E-value=4.6e-08 Score=107.23 Aligned_cols=233 Identities=12% Similarity=0.104 Sum_probs=151.9
Q ss_pred eEeecCC--CcEEEEE-cCCeEEEEECCCCCeEEeEec-CC------------CCCeEEEEEcCCCCeEEEEEC-CCcEE
Q 014934 171 NLVDWSS--HNVLAVG-LGNCVYLWNACSSKVTKLCDL-GI------------DDSVCSVGWANRNTHLAVGTS-HGKVQ 233 (415)
Q Consensus 171 ~~l~ws~--~~~la~~-~d~~V~iwd~~~~~~~~~~~~-~~------------~~~V~~v~~sp~g~~la~g~~-dg~V~ 233 (415)
..+++++ ++++++. ..+.|++||... ........ +. -.....|++.++++.|.++.. ++.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 3456665 3344444 457899999754 43333221 11 123588999998887666544 56799
Q ss_pred EEECCCCeeeEEecCC-----------------CccEEEEEeeC---CEEEEEeCCCcEEEEECCCCCccEEEeccc---
Q 014934 234 IWDASRCKRVRTMEGH-----------------RLRVGALAWSS---SLLSSGSRDKSILQRDIRAQEDFVSKLSGH--- 290 (415)
Q Consensus 234 iwd~~~~~~~~~l~~h-----------------~~~V~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h--- 290 (415)
++|..++. +.++.+. -..-..+++++ .++++.+.++.|++||...+. +..+.+.
T Consensus 650 ~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~--v~~~~G~G~~ 726 (1057)
T PLN02919 650 EIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGV--TRVFSGDGYE 726 (1057)
T ss_pred EEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCe--EEEEecCCcc
Confidence 99987754 3333210 01235677773 466777788899999987654 2222111
Q ss_pred ------------cCCeEEEEEeCCCCEE-EEEeCCCcEEEEECCCCceeEEe-------------ccC--------CCcE
Q 014934 291 ------------KSEVCGLKWSYDNREL-ASGGNDNRLFVWNQHSTQPVLKY-------------CEH--------TAAV 336 (415)
Q Consensus 291 ------------~~~V~~l~~spdg~~l-asg~~dg~I~iwd~~~~~~~~~~-------------~~h--------~~~V 336 (415)
-....+|+++|+++.| ++-..++.|++||+.++...... ..+ -...
T Consensus 727 ~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P 806 (1057)
T PLN02919 727 RNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHP 806 (1057)
T ss_pred ccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCC
Confidence 1235679999999854 55566789999999876432111 000 1124
Q ss_pred EEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCC--------------CCEEEEEECCCCCeEEEEEecCCCc
Q 014934 337 KAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTG--------------SQVCNLVWSKNVNELVSTHGYSQNQ 402 (415)
Q Consensus 337 ~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~--------------~~V~~l~~s~~~~~l~s~~g~~dg~ 402 (415)
.+++++++|. ++++.. .++.|++||..++........+ .....++++++|+.+++ ...++.
T Consensus 807 ~Gvavd~dG~-LYVADs--~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVa--Dt~Nn~ 881 (1057)
T PLN02919 807 LGVLCAKDGQ-IYVADS--YNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVA--DTNNSL 881 (1057)
T ss_pred ceeeEeCCCc-EEEEEC--CCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEE--ECCCCE
Confidence 6889999987 777665 7899999999988765443322 24678999999997777 678899
Q ss_pred EEEEECCCCc
Q 014934 403 IIVWRYPTMS 412 (415)
Q Consensus 403 I~vw~~~s~~ 412 (415)
|++||+.+.+
T Consensus 882 Irvid~~~~~ 891 (1057)
T PLN02919 882 IRYLDLNKGE 891 (1057)
T ss_pred EEEEECCCCc
Confidence 9999998764
No 259
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.17 E-value=4.2e-09 Score=101.05 Aligned_cols=239 Identities=13% Similarity=0.103 Sum_probs=169.2
Q ss_pred CcceeEeecCC-CcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCC---------------
Q 014934 167 DFYLNLVDWSS-HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHG--------------- 230 (415)
Q Consensus 167 ~~~i~~l~ws~-~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg--------------- 230 (415)
++.++.+.||| +.+|+......|.+|........ ..+.| ..|..+.|+|.+++|.+=...+
T Consensus 32 ~~p~~~~~~SP~G~~l~~~~~~~V~~~~g~~~~~l--~~~~~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n 108 (561)
T COG5354 32 NWPVAYVSESPLGTYLFSEHAAGVECWGGPSKAKL--VRFRH-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKN 108 (561)
T ss_pred CcchhheeecCcchheehhhccceEEccccchhhe--eeeec-CCceecccCcccceeeeeccCCccChhhccCCccccC
Confidence 56678889999 88888888889999987776533 33334 5799999999999999855433
Q ss_pred cEEEEECCCCeeeEEecCCCcc--EE-EEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccc-cCCeEEEEEeCCC-
Q 014934 231 KVQIWDASRCKRVRTMEGHRLR--VG-ALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGH-KSEVCGLKWSYDN- 303 (415)
Q Consensus 231 ~V~iwd~~~~~~~~~l~~h~~~--V~-~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h-~~~V~~l~~spdg- 303 (415)
.+.+||+.++..+..+.....+ .. -+.|+ ..+++-- ....++++++ +..-....+..- ...|....|+|.+
T Consensus 109 ~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n 186 (561)
T COG5354 109 NVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGN 186 (561)
T ss_pred ceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCccccCchhhccccceeeEEecCCCC
Confidence 4999999999999998876555 33 45555 3333322 3456899997 332111111111 2568888999964
Q ss_pred -CEEEE-----EeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcC--------CCCCeEEEEECCCCc
Q 014934 304 -RELAS-----GGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGG--------TADRCIRFWNTTTNT 369 (415)
Q Consensus 304 -~~las-----g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg--------~~d~~I~iwd~~t~~ 369 (415)
..||. ++.++.++||.+..++.+.+..-.+..-..+.|.+.|.+|++-.-. .....+.++++....
T Consensus 187 ~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~ 266 (561)
T COG5354 187 HDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERS 266 (561)
T ss_pred CceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccc
Confidence 34554 6778899999998776665544344444678999999877654310 013568888887555
Q ss_pred EEEEeeCCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCC
Q 014934 370 HLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPT 410 (415)
Q Consensus 370 ~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s 410 (415)
+....+..++|...+|.|+++.+++.+|+.+-.+.+++++.
T Consensus 267 i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~ 307 (561)
T COG5354 267 IPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRG 307 (561)
T ss_pred cceeccccccceeeeecccCCceeEEecccccceeeccccc
Confidence 44444668999999999999999999999998999988865
No 260
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.17 E-value=8.4e-08 Score=93.14 Aligned_cols=220 Identities=11% Similarity=0.109 Sum_probs=149.3
Q ss_pred CeEEEEEC--CCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEEC----CCcEEEEECCCC--e--eeEEecCCCccEEEE
Q 014934 187 NCVYLWNA--CSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTS----HGKVQIWDASRC--K--RVRTMEGHRLRVGAL 256 (415)
Q Consensus 187 ~~V~iwd~--~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~----dg~V~iwd~~~~--~--~~~~l~~h~~~V~~l 256 (415)
+.|++|++ .++++..+...........++++|++++|.+... +|.|..|++... + .+............+
T Consensus 13 ~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i 92 (345)
T PF10282_consen 13 GGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHI 92 (345)
T ss_dssp TEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEE
T ss_pred CcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEE
Confidence 67888877 6666655444334567788999999999998876 568999988654 2 333333233445567
Q ss_pred Eee--CCEEEEEe-CCCcEEEEECCCCCccEEE--ec-----------cccCCeEEEEEeCCCCEEEEEe-CCCcEEEEE
Q 014934 257 AWS--SSLLSSGS-RDKSILQRDIRAQEDFVSK--LS-----------GHKSEVCGLKWSYDNRELASGG-NDNRLFVWN 319 (415)
Q Consensus 257 ~~~--~~~l~sgs-~dg~I~iwd~~~~~~~~~~--~~-----------~h~~~V~~l~~spdg~~lasg~-~dg~I~iwd 319 (415)
+.+ +++|+++. .+|.|.++++......... .. .......++.++|+|++|++.. ....|.+|+
T Consensus 93 ~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~ 172 (345)
T PF10282_consen 93 AVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYD 172 (345)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEE
T ss_pred EEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEE
Confidence 775 56777765 5899999999875422221 11 1124578899999999888764 345799999
Q ss_pred CCCCc--e--eEEec-cCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECC--CCc--EEEEeeC-------CCCEEEE
Q 014934 320 QHSTQ--P--VLKYC-EHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTT--TNT--HLSCMDT-------GSQVCNL 383 (415)
Q Consensus 320 ~~~~~--~--~~~~~-~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~--t~~--~~~~~~~-------~~~V~~l 383 (415)
+.... . ...+. ........++|+|+++++++... .++.|.++++. ++. .++.+.. ......+
T Consensus 173 ~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e--~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i 250 (345)
T PF10282_consen 173 IDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNE--LSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEI 250 (345)
T ss_dssp E-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEET--TTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEE
T ss_pred EeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecC--CCCcEEEEeecccCCceeEEEEeeeccccccccCCceeE
Confidence 87654 2 12222 34566899999999998888886 89999999988 443 2333321 1257889
Q ss_pred EECCCCCeEEEEEecCCCcEEEEECC
Q 014934 384 VWSKNVNELVSTHGYSQNQIIVWRYP 409 (415)
Q Consensus 384 ~~s~~~~~l~s~~g~~dg~I~vw~~~ 409 (415)
.++|+|++|.++. ...+.|.+|++.
T Consensus 251 ~ispdg~~lyvsn-r~~~sI~vf~~d 275 (345)
T PF10282_consen 251 AISPDGRFLYVSN-RGSNSISVFDLD 275 (345)
T ss_dssp EE-TTSSEEEEEE-CTTTEEEEEEEC
T ss_pred EEecCCCEEEEEe-ccCCEEEEEEEe
Confidence 9999999999874 457799999994
No 261
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.14 E-value=3e-10 Score=122.20 Aligned_cols=184 Identities=15% Similarity=0.278 Sum_probs=149.1
Q ss_pred CCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEec-CCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccE
Q 014934 208 DDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTME-GHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFV 284 (415)
Q Consensus 208 ~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~-~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~ 284 (415)
-..|.++.=+|...+.++|+.||.|++|.-..++.+..+. ....+|+.+.|+ |+.+..+..||.+.+|.+.. ++.
T Consensus 2208 v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~p--k~~ 2285 (2439)
T KOG1064|consen 2208 VENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASP--KPY 2285 (2439)
T ss_pred cCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCC--cce
Confidence 3567777778888899999999999999998887776664 334889999998 88999999999999999873 357
Q ss_pred EEeccccCCeEEEEEeCCCCEEEEEe---CCCcEEEEECCC--C-ceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCC
Q 014934 285 SKLSGHKSEVCGLKWSYDNRELASGG---NDNRLFVWNQHS--T-QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADR 358 (415)
Q Consensus 285 ~~~~~h~~~V~~l~~spdg~~lasg~---~dg~I~iwd~~~--~-~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~ 358 (415)
...+.|......+.|-. ..+++++ .++.+.+||..- + ..++ ..|.+.++++++.|... +|.+|| .+|
T Consensus 2286 ~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~q-llisgg--r~G 2358 (2439)
T KOG1064|consen 2286 TSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQ-LLISGG--RKG 2358 (2439)
T ss_pred eccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcce-EEEecC--CcC
Confidence 77888999999988874 6677765 457899999642 2 2333 68999999999999876 899987 999
Q ss_pred eEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCC
Q 014934 359 CIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTM 411 (415)
Q Consensus 359 ~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~ 411 (415)
.|++||++..++++.+.. +. ...++++ |...|.|+||++...
T Consensus 2359 ~v~l~D~rqrql~h~~~~--------~~-~~~~f~~--~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2359 EVCLFDIRQRQLRHTFQA--------LD-TREYFVT--GSSEGNIKIWRLSEF 2400 (2439)
T ss_pred cEEEeehHHHHHHHHhhh--------hh-hhheeec--cCcccceEEEEcccc
Confidence 999999998887766643 44 4556666 889999999999765
No 262
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.14 E-value=6.5e-10 Score=101.81 Aligned_cols=197 Identities=16% Similarity=0.271 Sum_probs=142.4
Q ss_pred CCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCe-----eeEEecCCC------------ccEEEEEee----CCEEEE
Q 014934 207 IDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCK-----RVRTMEGHR------------LRVGALAWS----SSLLSS 265 (415)
Q Consensus 207 ~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~-----~~~~l~~h~------------~~V~~l~~~----~~~l~s 265 (415)
..+.|.+|.|...|.+||+|..+|.|.++.-.... ....++.|. ..|..+.|. ...++.
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 45789999999999999999999999999754322 233343343 468888997 357777
Q ss_pred EeCCCcEEEEECCCCCcc----------------------------------EEE-eccccCCeEEEEEeCCCCEEEEEe
Q 014934 266 GSRDKSILQRDIRAQEDF----------------------------------VSK-LSGHKSEVCGLKWSYDNRELASGG 310 (415)
Q Consensus 266 gs~dg~I~iwd~~~~~~~----------------------------------~~~-~~~h~~~V~~l~~spdg~~lasg~ 310 (415)
.+.|++|++|-++..... .+. -.+|...|.++.++.|+..++++.
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD 183 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD 183 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc
Confidence 889999999988653210 011 125778899999999999998874
Q ss_pred CCCcEEEEECCCCcee---EEecc-----CCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEE------Ee--
Q 014934 311 NDNRLFVWNQHSTQPV---LKYCE-----HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLS------CM-- 374 (415)
Q Consensus 311 ~dg~I~iwd~~~~~~~---~~~~~-----h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~------~~-- 374 (415)
|=+|.+|++.-...- .-++. -+.-|++..|+|..-.+++-++ ..|+|++-|++...+-. ..
T Consensus 184 -dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSS--SKGtIrLcDmR~~aLCd~hsKlfEepe 260 (433)
T KOG1354|consen 184 -DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSS--SKGTIRLCDMRQSALCDAHSKLFEEPE 260 (433)
T ss_pred -ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEec--CCCcEEEeechhhhhhcchhhhhcccc
Confidence 678999998643221 12222 2346889999999888887766 79999999998543211 10
Q ss_pred e---------CCCCEEEEEECCCCCeEEEEEecCCCcEEEEECC
Q 014934 375 D---------TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYP 409 (415)
Q Consensus 375 ~---------~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~ 409 (415)
+ .-+.|..+.|+.+|+++++ - +-.+|++||+.
T Consensus 261 dp~~rsffseiIsSISDvKFs~sGryils--R-Dyltvk~wD~n 301 (433)
T KOG1354|consen 261 DPSSRSFFSEIISSISDVKFSHSGRYILS--R-DYLTVKLWDLN 301 (433)
T ss_pred CCcchhhHHHHhhhhhceEEccCCcEEEE--e-ccceeEEEecc
Confidence 0 1145888999999999998 3 34699999985
No 263
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.10 E-value=8e-09 Score=94.78 Aligned_cols=236 Identities=13% Similarity=0.242 Sum_probs=158.1
Q ss_pred ceeEeecCC-CcEEEEEc-CCeEEEEECCCCC-----eEEeEe-----------cCCCCCeEEEEEcCCCC--eEEEEEC
Q 014934 169 YLNLVDWSS-HNVLAVGL-GNCVYLWNACSSK-----VTKLCD-----------LGIDDSVCSVGWANRNT--HLAVGTS 228 (415)
Q Consensus 169 ~i~~l~ws~-~~~la~~~-d~~V~iwd~~~~~-----~~~~~~-----------~~~~~~V~~v~~sp~g~--~la~g~~ 228 (415)
.+.++.|.- ++.||+|. +|.|.++.-.... ....++ +.-...|..+.|.++++ .++..+.
T Consensus 27 iis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstN 106 (433)
T KOG1354|consen 27 IISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTN 106 (433)
T ss_pred ceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecC
Confidence 477888887 99999994 6788888643321 111111 11235688999998764 6677789
Q ss_pred CCcEEEEECCCCee-----------------------------------eEEe-cCCCccEEEEEeeC--CEEEEEeCCC
Q 014934 229 HGKVQIWDASRCKR-----------------------------------VRTM-EGHRLRVGALAWSS--SLLSSGSRDK 270 (415)
Q Consensus 229 dg~V~iwd~~~~~~-----------------------------------~~~l-~~h~~~V~~l~~~~--~~l~sgs~dg 270 (415)
|.+|++|.+..... .+.+ .+|.--|.++.++. ..+++ ..|=
T Consensus 107 dktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lS-ADdL 185 (433)
T KOG1354|consen 107 DKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLS-ADDL 185 (433)
T ss_pred CcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEee-ccce
Confidence 99999998743110 0111 25777788888883 44554 4677
Q ss_pred cEEEEECCCCCccEEE--eccc-----cCCeEEEEEeC-CCCEEEEEeCCCcEEEEECCCCce------e----------
Q 014934 271 SILQRDIRAQEDFVSK--LSGH-----KSEVCGLKWSY-DNRELASGGNDNRLFVWNQHSTQP------V---------- 326 (415)
Q Consensus 271 ~I~iwd~~~~~~~~~~--~~~h-----~~~V~~l~~sp-dg~~lasg~~dg~I~iwd~~~~~~------~---------- 326 (415)
.|-+|++.-..+.... ++.+ ..-|++..|+| ..+.|+-.+..|.|++-|++.... +
T Consensus 186 RINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~r 265 (433)
T KOG1354|consen 186 RINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSR 265 (433)
T ss_pred eeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcch
Confidence 8999998765543332 2222 23488899999 456788889999999999985321 1
Q ss_pred EEeccCCCcEEEEEEcCCCCcEEEEEcCCCC-CeEEEEECC-CCcEEEEeeCC-------------CC---EEEEEECCC
Q 014934 327 LKYCEHTAAVKAIAWSPHLHGLLASGGGTAD-RCIRFWNTT-TNTHLSCMDTG-------------SQ---VCNLVWSKN 388 (415)
Q Consensus 327 ~~~~~h~~~V~~l~~sp~~~~llasggg~~d-~~I~iwd~~-t~~~~~~~~~~-------------~~---V~~l~~s~~ 388 (415)
.-|.+-...|..+.|++.|+++|+ .| -+|++||+. ..+++.++... .. -..++|+.+
T Consensus 266 sffseiIsSISDvKFs~sGryils-----RDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~ 340 (433)
T KOG1354|consen 266 SFFSEIISSISDVKFSHSGRYILS-----RDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGN 340 (433)
T ss_pred hhHHHHhhhhhceEEccCCcEEEE-----eccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCC
Confidence 111223456889999999996666 34 789999994 44555554311 11 246899999
Q ss_pred CCeEEEEEecCCCcEEEEECCCCc
Q 014934 389 VNELVSTHGYSQNQIIVWRYPTMS 412 (415)
Q Consensus 389 ~~~l~s~~g~~dg~I~vw~~~s~~ 412 (415)
+..+++ |+-.+.+++++...+.
T Consensus 341 ~~~v~T--Gsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 341 DSYVMT--GSYNNVFRVFNLARGS 362 (433)
T ss_pred cceEec--ccccceEEEecCCCCc
Confidence 999988 8788899999965543
No 264
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.07 E-value=1.5e-07 Score=85.95 Aligned_cols=219 Identities=15% Similarity=0.080 Sum_probs=143.3
Q ss_pred CCeEEEEECCCCCeEEeEecCC-CCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEecCCCccEEEEEeeCCEEE
Q 014934 186 GNCVYLWNACSSKVTKLCDLGI-DDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWSSSLLS 264 (415)
Q Consensus 186 d~~V~iwd~~~~~~~~~~~~~~-~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~~~~l~ 264 (415)
++.|..||..+|+..-...+.. .....+. ..+++.++++++.++.|..||..+++.+-.+.............+..++
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v~ 80 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGRVY 80 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEETTEEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeecccccc
Confidence 5789999999999887776532 1222221 2336677888899999999999999987666532111111344577888
Q ss_pred EEeCCCcEEEEECCCCCccEEEecccc---CCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCc------
Q 014934 265 SGSRDKSILQRDIRAQEDFVSKLSGHK---SEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAA------ 335 (415)
Q Consensus 265 sgs~dg~I~iwd~~~~~~~~~~~~~h~---~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~------ 335 (415)
+++.++.|+.+|..+++..-....... ..........++..++.+..++.|..+|+++|+.+..+......
T Consensus 81 v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~ 160 (238)
T PF13360_consen 81 VGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPIS 160 (238)
T ss_dssp EEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EE
T ss_pred cccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCccee
Confidence 888999999999998884333122221 11222333334888999998999999999999998888654422
Q ss_pred ----EEEEEEcCCCCcEEEEEcCCCCCe-EEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCC
Q 014934 336 ----VKAIAWSPHLHGLLASGGGTADRC-IRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPT 410 (415)
Q Consensus 336 ----V~~l~~sp~~~~llasggg~~d~~-I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s 410 (415)
+..-....++ .++++. .++. +.+ |+.+++.+.... ...+.. ....++..|++ +..++.|..||..+
T Consensus 161 ~~~~~~~~~~~~~~-~v~~~~---~~g~~~~~-d~~tg~~~w~~~-~~~~~~-~~~~~~~~l~~--~~~~~~l~~~d~~t 231 (238)
T PF13360_consen 161 SFSDINGSPVISDG-RVYVSS---GDGRVVAV-DLATGEKLWSKP-ISGIYS-LPSVDGGTLYV--TSSDGRLYALDLKT 231 (238)
T ss_dssp EETTEEEEEECCTT-EEEEEC---CTSSEEEE-ETTTTEEEEEEC-SS-ECE-CEECCCTEEEE--EETTTEEEEEETTT
T ss_pred eecccccceEEECC-EEEEEc---CCCeEEEE-ECCCCCEEEEec-CCCccC-CceeeCCEEEE--EeCCCEEEEEECCC
Confidence 1222222234 466655 3564 666 999999775443 333333 24567777777 34789999999999
Q ss_pred Cccc
Q 014934 411 MSKV 414 (415)
Q Consensus 411 ~~~l 414 (415)
++.+
T Consensus 232 G~~~ 235 (238)
T PF13360_consen 232 GKVV 235 (238)
T ss_dssp TEEE
T ss_pred CCEE
Confidence 8753
No 265
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.07 E-value=1.4e-09 Score=108.21 Aligned_cols=239 Identities=16% Similarity=0.262 Sum_probs=169.7
Q ss_pred ceeEeecCC-CcEEEEEcCCeEEEEECCCCC-eEEeEecCCCCCeEEEEEcCCC--CeEEEEECCCcEEEEECCCC---e
Q 014934 169 YLNLVDWSS-HNVLAVGLGNCVYLWNACSSK-VTKLCDLGIDDSVCSVGWANRN--THLAVGTSHGKVQIWDASRC---K 241 (415)
Q Consensus 169 ~i~~l~ws~-~~~la~~~d~~V~iwd~~~~~-~~~~~~~~~~~~V~~v~~sp~g--~~la~g~~dg~V~iwd~~~~---~ 241 (415)
.++.+..+| ++-+|.+....+++.|+...- ..+.+..-..-.|-.+.|++.. .+-++....-.-.+|++... .
T Consensus 26 ~~~a~si~p~grdi~lAsr~gl~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~a 105 (1081)
T KOG0309|consen 26 GFNAVSINPSGRDIVLASRQGLYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNA 105 (1081)
T ss_pred cccceeeccccchhhhhhhcCeEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCCccc
Confidence 456677777 666777766778888876642 2222211113457888998754 45566666667779998532 3
Q ss_pred eeEEecCCCccEEEEEee---CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEE
Q 014934 242 RVRTMEGHRLRVGALAWS---SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVW 318 (415)
Q Consensus 242 ~~~~l~~h~~~V~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iw 318 (415)
.--.+.+|...|+.+-|+ +..+++++.|-.+..||+++...++.........-..++|+-....+.+.+..+.|++|
T Consensus 106 Ief~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vw 185 (1081)
T KOG0309|consen 106 IEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVW 185 (1081)
T ss_pred eEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEE
Confidence 334567899999999998 58999999999999999999887777776666778889999644444444566779999
Q ss_pred ECCCC-ceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCC--cEEEEeeCCCCEEEEEECCCCCeEEEE
Q 014934 319 NQHST-QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTN--THLSCMDTGSQVCNLVWSKNVNELVST 395 (415)
Q Consensus 319 d~~~~-~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~--~~~~~~~~~~~V~~l~~s~~~~~l~s~ 395 (415)
|++.+ .++..+++|...|..++|...-...+.+++ .|++|++||.... +.-..+.+..+|..-.+.|-|.-.+..
T Consensus 186 d~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~--~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~m 263 (1081)
T KOG0309|consen 186 DLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSS--NDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIM 263 (1081)
T ss_pred eccCCCcceEEecccceeeehHHHhhhhhhhhcccC--CCCceeeecccccccccceeccccCcceeccccccCceeEec
Confidence 99865 678899999999999999876666677766 8999999998653 344555677888888888876544432
Q ss_pred EecCCCcEEEEECC
Q 014934 396 HGYSQNQIIVWRYP 409 (415)
Q Consensus 396 ~g~~dg~I~vw~~~ 409 (415)
-.-.++.+.+++.+
T Consensus 264 p~~G~n~v~~~~c~ 277 (1081)
T KOG0309|consen 264 PMVGGNMVPQLRCE 277 (1081)
T ss_pred cccCCeeeeecccc
Confidence 12223344444443
No 266
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.05 E-value=4.5e-08 Score=94.16 Aligned_cols=233 Identities=13% Similarity=0.127 Sum_probs=157.8
Q ss_pred EeecCC-CcEEEEEcCCeEEEEECCCCCeEEeEec-CCCCCeEEEEEcCCCC--eEEE-----EECCCcEEEEECCCCee
Q 014934 172 LVDWSS-HNVLAVGLGNCVYLWNACSSKVTKLCDL-GIDDSVCSVGWANRNT--HLAV-----GTSHGKVQIWDASRCKR 242 (415)
Q Consensus 172 ~l~ws~-~~~la~~~d~~V~iwd~~~~~~~~~~~~-~~~~~V~~v~~sp~g~--~la~-----g~~dg~V~iwd~~~~~~ 242 (415)
.+.|+- ++++|--.+..++|+++ ++.....-.. -....|....|+|.|+ .||. +...+.++||.+..++.
T Consensus 136 ~~k~s~~D~y~ARvv~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~ 214 (561)
T COG5354 136 VLKFSIDDKYVARVVGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSV 214 (561)
T ss_pred eeeeeecchhhhhhccCeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCe
Confidence 456776 55555556789999997 5443321100 1136789999999653 4454 35678899999987766
Q ss_pred eEEecCCCccEEEEEee--CCEEEEEe-----------CCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEE
Q 014934 243 VRTMEGHRLRVGALAWS--SSLLSSGS-----------RDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASG 309 (415)
Q Consensus 243 ~~~l~~h~~~V~~l~~~--~~~l~sgs-----------~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg 309 (415)
+.+-.-....-..+.|+ +++|++-- ....+++++++.... .....-.++|...+|.|.++.|++.
T Consensus 215 l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i--~V~~~~~~pVhdf~W~p~S~~F~vi 292 (561)
T COG5354 215 LVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSI--PVEKDLKDPVHDFTWEPLSSRFAVI 292 (561)
T ss_pred eeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccccc--ceeccccccceeeeecccCCceeEE
Confidence 65544333444567777 45443321 124588889886552 2222557899999999999988775
Q ss_pred e--CCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCCCEEEEEECC
Q 014934 310 G--NDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSK 387 (415)
Q Consensus 310 ~--~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~ 387 (415)
+ .+-.+.++|++.. ..+ ......=+.+.|+|.++++|+.|=|...|.|-+||.........--.+....-+.|+|
T Consensus 293 ~g~~pa~~s~~~lr~N-l~~--~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n~s~~~wsp 369 (561)
T COG5354 293 SGYMPASVSVFDLRGN-LRF--YFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNTSYCDWSP 369 (561)
T ss_pred ecccccceeecccccc-eEE--ecCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCCceEeeccC
Confidence 4 6788999999876 333 2445556778999999998888766678999999988765444222334445578999
Q ss_pred CCCeEEEEEec----CCCcEEEEECCC
Q 014934 388 NVNELVSTHGY----SQNQIIVWRYPT 410 (415)
Q Consensus 388 ~~~~l~s~~g~----~dg~I~vw~~~s 410 (415)
+++++.+..-+ .|+.|.||++..
T Consensus 370 d~qF~~~~~ts~k~~~Dn~i~l~~v~g 396 (561)
T COG5354 370 DGQFYDTDTTSEKLRVDNSIKLWDVYG 396 (561)
T ss_pred CceEEEecCCCcccccCcceEEEEecC
Confidence 99998774322 378999999854
No 267
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.05 E-value=1.1e-07 Score=90.69 Aligned_cols=212 Identities=14% Similarity=0.139 Sum_probs=155.4
Q ss_pred CcEEEEEcCCeEEEEECCCCCeEEeEecC-C----CC---CeE---EEE-EcC-CCCeEEEEECCCcEEEEECCCCeeeE
Q 014934 178 HNVLAVGLGNCVYLWNACSSKVTKLCDLG-I----DD---SVC---SVG-WAN-RNTHLAVGTSHGKVQIWDASRCKRVR 244 (415)
Q Consensus 178 ~~~la~~~d~~V~iwd~~~~~~~~~~~~~-~----~~---~V~---~v~-~sp-~g~~la~g~~dg~V~iwd~~~~~~~~ 244 (415)
+.-++....|.|++||..+.++.++- ++ . .. .+. -+. |++ +|.+++..+ .|.+.|.+...+-.+.
T Consensus 278 GkrIvFq~~GdIylydP~td~lekld-I~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS-RGkaFi~~~~~~~~iq 355 (668)
T COG4946 278 GKRIVFQNAGDIYLYDPETDSLEKLD-IGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS-RGKAFIMRPWDGYSIQ 355 (668)
T ss_pred CcEEEEecCCcEEEeCCCcCcceeee-cCCccccccccccccCHHHhhhhhccCCCcEEEEEe-cCcEEEECCCCCeeEE
Confidence 56788888999999999987765543 22 1 00 111 111 443 688888765 5678888776554443
Q ss_pred EecCCCccEEEEEee--CCEEEEEeCCC-cEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECC
Q 014934 245 TMEGHRLRVGALAWS--SSLLSSGSRDK-SILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQH 321 (415)
Q Consensus 245 ~l~~h~~~V~~l~~~--~~~l~sgs~dg-~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~ 321 (415)
. +|.+.|.-..+. ++-++.|..|| .+-++|.++++ +..+...-+.|.+++.+++|++++++.....|.+.|+.
T Consensus 356 v--~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e--~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vidid 431 (668)
T COG4946 356 V--GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE--VKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDID 431 (668)
T ss_pred c--CCCCceEEEEEccCCcceEEeccCCceEEEEecCCce--EEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEec
Confidence 2 456666665554 67899999999 89999999886 56667777899999999999999999999999999999
Q ss_pred CCceeEEeccCCCcEEEEEEcCCCCcEEEEE-cCCCCCeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEEE
Q 014934 322 STQPVLKYCEHTAAVKAIAWSPHLHGLLASG-GGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVST 395 (415)
Q Consensus 322 ~~~~~~~~~~h~~~V~~l~~sp~~~~llasg-gg~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~ 395 (415)
++.....=+...+-|+.++|+|+++++..+- .|..-..|+++|+.+++........+.-.+-+|.|++++|..-
T Consensus 432 ngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfL 506 (668)
T COG4946 432 NGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFL 506 (668)
T ss_pred CCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEE
Confidence 9977554445667899999999998554332 1234567999999999876655444555678899999988653
No 268
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.03 E-value=1.7e-06 Score=79.79 Aligned_cols=212 Identities=15% Similarity=0.162 Sum_probs=141.0
Q ss_pred EeecCC--CcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEc-CCCCeEEEEECCCcEEEEECCCCeeeEEec
Q 014934 172 LVDWSS--HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWA-NRNTHLAVGTSHGKVQIWDASRCKRVRTME 247 (415)
Q Consensus 172 ~l~ws~--~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~s-p~g~~la~g~~dg~V~iwd~~~~~~~~~l~ 247 (415)
.+.|.+ +.++.+. ..+.|+.|+..++.... +... ...++.+. ++| .|+++...+ +.++|..+++....+.
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~---~~~G~~~~~~~g-~l~v~~~~~-~~~~d~~~g~~~~~~~ 77 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLP---GPNGMAFDRPDG-RLYVADSGG-IAVVDPDTGKVTVLAD 77 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESS---SEEEEEEECTTS-EEEEEETTC-EEEEETTTTEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecC---CCceEEEEccCC-EEEEEEcCc-eEEEecCCCcEEEEee
Confidence 567886 5566666 47899999998876544 3322 27777887 564 455555554 5666998886443333
Q ss_pred C-----CCccEEEEEee--CCEEEEEeCC--------CcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEE-EEeC
Q 014934 248 G-----HRLRVGALAWS--SSLLSSGSRD--------KSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELA-SGGN 311 (415)
Q Consensus 248 ~-----h~~~V~~l~~~--~~~l~sgs~d--------g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~la-sg~~ 311 (415)
. .....+.+++. +++.++.... |.|..++.. +. ...+...-...++|+|+|+++.|. +-+.
T Consensus 78 ~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~--~~~~~~~~~~pNGi~~s~dg~~lyv~ds~ 154 (246)
T PF08450_consen 78 LPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GK--VTVVADGLGFPNGIAFSPDGKTLYVADSF 154 (246)
T ss_dssp EETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SE--EEEEEEEESSEEEEEEETTSSEEEEEETT
T ss_pred ccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-Ce--EEEEecCcccccceEECCcchheeecccc
Confidence 2 45678889988 4555555433 457777776 33 333333455688999999999775 5567
Q ss_pred CCcEEEEECCCCce-------eEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCC-CCEEEE
Q 014934 312 DNRLFVWNQHSTQP-------VLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTG-SQVCNL 383 (415)
Q Consensus 312 dg~I~iwd~~~~~~-------~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~-~~V~~l 383 (415)
.+.|..|++..... +..+....+..-.+++..+|+ |+++.- ..+.|.++|.. |+.+..+... ..++++
T Consensus 155 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~-l~va~~--~~~~I~~~~p~-G~~~~~i~~p~~~~t~~ 230 (246)
T PF08450_consen 155 NGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGN-LWVADW--GGGRIVVFDPD-GKLLREIELPVPRPTNC 230 (246)
T ss_dssp TTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS--EEEEEE--TTTEEEEEETT-SCEEEEEE-SSSSEEEE
T ss_pred cceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCC-EEEEEc--CCCEEEEECCC-ccEEEEEcCCCCCEEEE
Confidence 78899999863221 222222333578899999997 666543 47899999988 9998888855 789999
Q ss_pred EE-CCCCCeEEEEE
Q 014934 384 VW-SKNVNELVSTH 396 (415)
Q Consensus 384 ~~-s~~~~~l~s~~ 396 (415)
+| -++.+.|..|+
T Consensus 231 ~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 231 AFGGPDGKTLYVTT 244 (246)
T ss_dssp EEESTTSSEEEEEE
T ss_pred EEECCCCCEEEEEe
Confidence 99 57777777754
No 269
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.02 E-value=1.5e-08 Score=93.11 Aligned_cols=83 Identities=34% Similarity=0.628 Sum_probs=74.2
Q ss_pred CeeeEEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEE
Q 014934 240 CKRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFV 317 (415)
Q Consensus 240 ~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~i 317 (415)
...+.++.+|.+.+.+++|. +..|++|..|..+.+||+.........+.+|...|..+..-+--+.|.+++.||.|.+
T Consensus 187 ~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~ 266 (404)
T KOG1409|consen 187 CQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVV 266 (404)
T ss_pred CceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEE
Confidence 45667788999999999999 4799999999999999998877667888999999999998888899999999999999
Q ss_pred EECCC
Q 014934 318 WNQHS 322 (415)
Q Consensus 318 wd~~~ 322 (415)
||.+.
T Consensus 267 w~mn~ 271 (404)
T KOG1409|consen 267 WNMNV 271 (404)
T ss_pred Eeccc
Confidence 99853
No 270
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.01 E-value=6.5e-07 Score=83.22 Aligned_cols=222 Identities=12% Similarity=0.123 Sum_probs=150.6
Q ss_pred CCeEEEEECCC--CCeEEeEecCCCCCeEEEEEcCCCCeEEEEECC---CcEEEEECCC--Cee--eEEecCCCccEEEE
Q 014934 186 GNCVYLWNACS--SKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSH---GKVQIWDASR--CKR--VRTMEGHRLRVGAL 256 (415)
Q Consensus 186 d~~V~iwd~~~--~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~d---g~V~iwd~~~--~~~--~~~l~~h~~~V~~l 256 (415)
++.|++|++.+ +++.........+.++-++|+|++++|.++..+ |.|.-|.+.. |+. +........+-+-+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 56799998874 444444334567889999999999998888654 6788877764 332 11111112223566
Q ss_pred Eee--CCEEEEEeC-CCcEEEEECCCCCcc--EEEeccccCC----------eEEEEEeCCCCEEEEEeC-CCcEEEEEC
Q 014934 257 AWS--SSLLSSGSR-DKSILQRDIRAQEDF--VSKLSGHKSE----------VCGLKWSYDNRELASGGN-DNRLFVWNQ 320 (415)
Q Consensus 257 ~~~--~~~l~sgs~-dg~I~iwd~~~~~~~--~~~~~~h~~~----------V~~l~~spdg~~lasg~~-dg~I~iwd~ 320 (415)
+.+ +++++++.. -|.|.++-++....+ ......|.+. +....+.|++++|++.+- -.+|.+|++
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~ 174 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL 174 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence 666 567777764 578999988764322 1122234444 788899999999988753 346999999
Q ss_pred CCCceeEEec---cCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCC-c---EEEEee-------CCCCEEEEEEC
Q 014934 321 HSTQPVLKYC---EHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTN-T---HLSCMD-------TGSQVCNLVWS 386 (415)
Q Consensus 321 ~~~~~~~~~~---~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~-~---~~~~~~-------~~~~V~~l~~s 386 (415)
..++....-. ...+.-+.|+|+|+++..++.+- .+++|-+|..... . .++.+. .......+..+
T Consensus 175 ~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~E--L~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis 252 (346)
T COG2706 175 DDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNE--LNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHIS 252 (346)
T ss_pred ccCccccccccccCCCCCcceEEEcCCCcEEEEEec--cCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEEC
Confidence 9775432111 34556789999999998888876 8999999998873 2 233332 23557789999
Q ss_pred CCCCeEEEEEecCCCcEEEEECCC
Q 014934 387 KNVNELVSTHGYSQNQIIVWRYPT 410 (415)
Q Consensus 387 ~~~~~l~s~~g~~dg~I~vw~~~s 410 (415)
++|++|.++-- ..+.|.+|.+..
T Consensus 253 ~dGrFLYasNR-g~dsI~~f~V~~ 275 (346)
T COG2706 253 PDGRFLYASNR-GHDSIAVFSVDP 275 (346)
T ss_pred CCCCEEEEecC-CCCeEEEEEEcC
Confidence 99999998643 344888888754
No 271
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.01 E-value=2.5e-07 Score=88.41 Aligned_cols=146 Identities=12% Similarity=0.101 Sum_probs=116.8
Q ss_pred cCCCcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCC-cEEEEECCCCeeeEEecCCCccE
Q 014934 175 WSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHG-KVQIWDASRCKRVRTMEGHRLRV 253 (415)
Q Consensus 175 ws~~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg-~V~iwd~~~~~~~~~l~~h~~~V 253 (415)
-.+++.+|.-+-|.+.|.+...+-.++ +++...|.-..+..+++-++.|..|| .+-|+|..+++.. .+...-+.|
T Consensus 329 ~~~Gd~ia~VSRGkaFi~~~~~~~~iq---v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~k-r~e~~lg~I 404 (668)
T COG4946 329 VVNGDYIALVSRGKAFIMRPWDGYSIQ---VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVK-RIEKDLGNI 404 (668)
T ss_pred cCCCcEEEEEecCcEEEECCCCCeeEE---cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEE-EeeCCccce
Confidence 445788888889999998876665444 46778899999999999999999999 8999999887644 455567889
Q ss_pred EEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCC----cEEEEECCCCce
Q 014934 254 GALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDN----RLFVWNQHSTQP 325 (415)
Q Consensus 254 ~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg----~I~iwd~~~~~~ 325 (415)
.++..+ +..++.+.....|.+.|+.++. ....-+...+-|..+.|||+++++|-+--+| .|+++|+.+++.
T Consensus 405 ~av~vs~dGK~~vvaNdr~el~vididngn-v~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Ki 481 (668)
T COG4946 405 EAVKVSPDGKKVVVANDRFELWVIDIDNGN-VRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKI 481 (668)
T ss_pred EEEEEcCCCcEEEEEcCceEEEEEEecCCC-eeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeE
Confidence 999988 5678888888899999999987 2333344557799999999999999876655 589999887654
No 272
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.01 E-value=1.5e-07 Score=83.98 Aligned_cols=226 Identities=12% Similarity=0.068 Sum_probs=148.5
Q ss_pred cEEEEE-cCCeEEEEECCCCCe-EEeEecCCCCCeEEEEEcCC-CCeEEEEECCCcEEEEECCCCeeeEEecCCCccEEE
Q 014934 179 NVLAVG-LGNCVYLWNACSSKV-TKLCDLGIDDSVCSVGWANR-NTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGA 255 (415)
Q Consensus 179 ~~la~~-~d~~V~iwd~~~~~~-~~~~~~~~~~~V~~v~~sp~-g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~ 255 (415)
.+||+| ..|...+|...+.+. ..++. .+...|+-+.=..+ .-.+..++.|.++++.++.-+.....+....-.+..
T Consensus 85 ~~la~gG~~g~fd~~~~~tn~~h~~~cd-~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns 163 (344)
T KOG4532|consen 85 VTLADGGASGQFDLFACNTNDGHLYQCD-VSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNS 163 (344)
T ss_pred cEEEeccccceeeeecccCcccceeeec-ccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceee
Confidence 467776 568999999987654 44444 33333333222222 234666788888888887644322222211123667
Q ss_pred EEee--CCEEEEEeCCCcEEEEECCCCCccEEE--eccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeE----
Q 014934 256 LAWS--SSLLSSGSRDKSILQRDIRAQEDFVSK--LSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVL---- 327 (415)
Q Consensus 256 l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~--~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~---- 327 (415)
++.+ +.++++.+....|..|.+......+.. .......-.+..|+.....+|++.+||.+.|||++......
T Consensus 164 ~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~s 243 (344)
T KOG4532|consen 164 LHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEIS 243 (344)
T ss_pred eEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhc
Confidence 7776 689999999999999999876543332 22334445678899999999999999999999998753322
Q ss_pred -EeccCCCcEEEEEEcCCCCc-EEEEEcCCCCCeEEEEECCCCcEEEEee--------CCCC-EEEEEECCCCCeEEEEE
Q 014934 328 -KYCEHTAAVKAIAWSPHLHG-LLASGGGTADRCIRFWNTTTNTHLSCMD--------TGSQ-VCNLVWSKNVNELVSTH 396 (415)
Q Consensus 328 -~~~~h~~~V~~l~~sp~~~~-llasggg~~d~~I~iwd~~t~~~~~~~~--------~~~~-V~~l~~s~~~~~l~s~~ 396 (415)
+-..|.+++..+.|++.|.. ||.-.. .-+.+.+.|++++...+.+. +..+ |....|+.++.-+.+.
T Consensus 244 strp~hnGa~R~c~Fsl~g~lDLLf~sE--hfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~- 320 (344)
T KOG4532|consen 244 STRPHHNGAFRVCRFSLYGLLDLLFISE--HFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVK- 320 (344)
T ss_pred ccCCCCCCceEEEEecCCCcceEEEEec--CcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccc-
Confidence 22358999999999987642 333332 47889999999988766553 3334 7888888887766652
Q ss_pred ecCCCcEEEEECCC
Q 014934 397 GYSQNQIIVWRYPT 410 (415)
Q Consensus 397 g~~dg~I~vw~~~s 410 (415)
. .-.+.=|++.+
T Consensus 321 -~-e~~~ae~ni~s 332 (344)
T KOG4532|consen 321 -N-ELQGAEYNILS 332 (344)
T ss_pred -c-chhhheeeccc
Confidence 2 22455555544
No 273
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.00 E-value=3.5e-09 Score=105.44 Aligned_cols=238 Identities=17% Similarity=0.296 Sum_probs=164.8
Q ss_pred ceeEeecCC---Cc-EEEEEcCCeEEEEECCC--CCeEEeEecCCCCCeEEEEEcCCC-CeEEEEECCCcEEEEECCCC-
Q 014934 169 YLNLVDWSS---HN-VLAVGLGNCVYLWNACS--SKVTKLCDLGIDDSVCSVGWANRN-THLAVGTSHGKVQIWDASRC- 240 (415)
Q Consensus 169 ~i~~l~ws~---~~-~la~~~d~~V~iwd~~~--~~~~~~~~~~~~~~V~~v~~sp~g-~~la~g~~dg~V~iwd~~~~- 240 (415)
.+..+.|++ .. .++..+...-.+|++.. .+.+.++..+|...|+.+.|.|.. ..+|+++.|-.|..||+++.
T Consensus 69 ~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~ 148 (1081)
T KOG0309|consen 69 QVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH 148 (1081)
T ss_pred hhcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCC
Confidence 344567887 23 44444567788898754 344555555999999999999854 68999999999999999875
Q ss_pred eeeEEecCCCccEEEEEee---CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeC-CCCEEEEEeCCCcEE
Q 014934 241 KRVRTMEGHRLRVGALAWS---SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSY-DNRELASGGNDNRLF 316 (415)
Q Consensus 241 ~~~~~l~~h~~~V~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~lasg~~dg~I~ 316 (415)
..+............++|+ |+.++ .+..+.|.+||.+.+..++..+++|...|.++.|+. -...+.+++.|++|+
T Consensus 149 ~p~ys~~~w~s~asqVkwnyk~p~vla-sshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvk 227 (1081)
T KOG0309|consen 149 RPFYSTSSWRSAASQVKWNYKDPNVLA-SSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVK 227 (1081)
T ss_pred cceeeeecccccCceeeecccCcchhh-hccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCcee
Confidence 4555665566678889998 45544 456778999999999989999999999999999875 345678999999999
Q ss_pred EEECCCCceeE-EeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEE---------EECCCC-cEEEEee-CCCCEEEEE
Q 014934 317 VWNQHSTQPVL-KYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRF---------WNTTTN-THLSCMD-TGSQVCNLV 384 (415)
Q Consensus 317 iwd~~~~~~~~-~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~i---------wd~~t~-~~~~~~~-~~~~V~~l~ 384 (415)
.||........ .......+|..-++-|.|.....--.- .+..+.+ |+..++ +.++.+. |...|....
T Consensus 228 fw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~-G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFl 306 (1081)
T KOG0309|consen 228 FWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMV-GGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFL 306 (1081)
T ss_pred eecccccccccceeccccCcceeccccccCceeEecccc-CCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHh
Confidence 99986543221 122445677777888877654332210 1223333 443332 3455554 555666665
Q ss_pred ECCCC----------CeEEEEEecCCCcEEEEECCC
Q 014934 385 WSKNV----------NELVSTHGYSQNQIIVWRYPT 410 (415)
Q Consensus 385 ~s~~~----------~~l~s~~g~~dg~I~vw~~~s 410 (415)
|-..+ -.|++ -+.|..+++|-+.+
T Consensus 307 WR~r~e~~~d~d~rdfQLVT--WSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 307 WRKRKECDGDYDSRDFQLVT--WSKDQTLRLWPIDS 340 (1081)
T ss_pred hhhcccccCCCCccceeEEE--eecCCceEeeeccH
Confidence 54432 25666 67899999998864
No 274
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.99 E-value=8.1e-09 Score=96.58 Aligned_cols=158 Identities=18% Similarity=0.224 Sum_probs=109.4
Q ss_pred eEEEEEcCCCCeEEEEECCCcEEEEECCCCee----eEEec--CCCccEEEEEeeCCEEEEEe---CCCcEEEEECCCCC
Q 014934 211 VCSVGWANRNTHLAVGTSHGKVQIWDASRCKR----VRTME--GHRLRVGALAWSSSLLSSGS---RDKSILQRDIRAQE 281 (415)
Q Consensus 211 V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~----~~~l~--~h~~~V~~l~~~~~~l~sgs---~dg~I~iwd~~~~~ 281 (415)
...+..++.+++||++..+....+++...... +.... .-...+..+... .....+. ....+.+|....+
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~-~sv~v~dkagD~~~~di~s~~~~- 142 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIRED-TSVLVADKAGDVYSFDILSADSG- 142 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeecc-ceEEEEeecCCceeeeeeccccc-
Confidence 34456678888999988888877777654322 22221 122223333332 2333333 3344455554432
Q ss_pred ccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEec-cCCCcEEEEEEcCCCCcEEEEEcCCCCCeE
Q 014934 282 DFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYC-EHTAAVKAIAWSPHLHGLLASGGGTADRCI 360 (415)
Q Consensus 282 ~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~-~h~~~V~~l~~sp~~~~llasggg~~d~~I 360 (415)
....+.||-..+..++|+||+++++++..|..|+|-.......+..|- +|+..|..++.-++. +|+++| -|++|
T Consensus 143 -~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~--~LlS~s--GD~tl 217 (390)
T KOG3914|consen 143 -RCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY--LLLSGS--GDKTL 217 (390)
T ss_pred -CcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc--eeeecC--CCCcE
Confidence 345667999999999999999999999999999998876665555543 799999999999874 566666 49999
Q ss_pred EEEECCCCcEEEEee
Q 014934 361 RFWNTTTNTHLSCMD 375 (415)
Q Consensus 361 ~iwd~~t~~~~~~~~ 375 (415)
++||+.+|+++.+++
T Consensus 218 r~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 218 RLWDITSGKLLDTCD 232 (390)
T ss_pred EEEecccCCcccccc
Confidence 999999999887664
No 275
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.98 E-value=9.5e-07 Score=87.72 Aligned_cols=214 Identities=10% Similarity=0.042 Sum_probs=135.4
Q ss_pred CeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCe-EEEEECC---CcEEEEECCCCeeeEEecCCCccEEEEEeeC--
Q 014934 187 NCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTH-LAVGTSH---GKVQIWDASRCKRVRTMEGHRLRVGALAWSS-- 260 (415)
Q Consensus 187 ~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~-la~g~~d---g~V~iwd~~~~~~~~~l~~h~~~V~~l~~~~-- 260 (415)
..|++-|........+.. + +....-.|+|||+. ++..+.. ..|.++|+.+++...... ..+......|++
T Consensus 169 ~~l~~~d~dg~~~~~~~~-~--~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG 244 (419)
T PRK04043 169 SNIVLADYTLTYQKVIVK-G--GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDG 244 (419)
T ss_pred ceEEEECCCCCceeEEcc-C--CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCC
Confidence 367777776555433332 2 37888999999985 6654444 458889998876544333 455566677873
Q ss_pred C-EEEEEeCC--CcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCC-C--cEEEEECCCCceeEEeccCCC
Q 014934 261 S-LLSSGSRD--KSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGND-N--RLFVWNQHSTQPVLKYCEHTA 334 (415)
Q Consensus 261 ~-~l~sgs~d--g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~d-g--~I~iwd~~~~~~~~~~~~h~~ 334 (415)
+ ++++.+.+ ..|+++|+..+. ...+..+........|+|||+.|+..++. + .|++.|+.+++....... ..
T Consensus 245 ~~la~~~~~~g~~~Iy~~dl~~g~--~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~ 321 (419)
T PRK04043 245 SKLLLTMAPKGQPDIYLYDTNTKT--LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GK 321 (419)
T ss_pred CEEEEEEccCCCcEEEEEECCCCc--EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CC
Confidence 3 44444444 468888987765 34444444334456899999988776542 2 689999988765332211 11
Q ss_pred cEEEEEEcCCCCcEEEEEcCCC-----C-CeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEEEEecC-CCcEEEEE
Q 014934 335 AVKAIAWSPHLHGLLASGGGTA-----D-RCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYS-QNQIIVWR 407 (415)
Q Consensus 335 ~V~~l~~sp~~~~llasggg~~-----d-~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~-dg~I~vw~ 407 (415)
....|+|+|+.++.+..... . ..|.+.|+.++.... +..........|+|||+.|+.+.... ...|.+.+
T Consensus 322 --~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~-LT~~~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~ 398 (419)
T PRK04043 322 --NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR-LTANGVNQFPRFSSDGGSIMFIKYLGNQSALGIIR 398 (419)
T ss_pred --cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE-CCCCCCcCCeEECCCCCEEEEEEccCCcEEEEEEe
Confidence 12489999998877764211 1 478889998887533 33233344689999999888764322 22466666
Q ss_pred CCC
Q 014934 408 YPT 410 (415)
Q Consensus 408 ~~s 410 (415)
+..
T Consensus 399 l~g 401 (419)
T PRK04043 399 LNY 401 (419)
T ss_pred cCC
Confidence 654
No 276
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.92 E-value=5.6e-07 Score=89.38 Aligned_cols=191 Identities=8% Similarity=0.053 Sum_probs=120.6
Q ss_pred eeEeecCC-Cc-EEEE-Ec---CCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEEC-C--CcEEEEECCCC
Q 014934 170 LNLVDWSS-HN-VLAV-GL---GNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTS-H--GKVQIWDASRC 240 (415)
Q Consensus 170 i~~l~ws~-~~-~la~-~~---d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~-d--g~V~iwd~~~~ 240 (415)
.....|+| ++ +++. .. ...|+++|+.+++...+.. ..+.+....|+|||+.|+.... + ..|.++|+.++
T Consensus 190 ~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~--~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g 267 (419)
T PRK04043 190 NIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS--SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK 267 (419)
T ss_pred eEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec--CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 44678999 54 4554 33 2479999999998877764 3456777889999987776533 3 45777788776
Q ss_pred eeeEEecCCCccEEEEEee--CCEEEEEe-CCC--cEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCC---
Q 014934 241 KRVRTMEGHRLRVGALAWS--SSLLSSGS-RDK--SILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGND--- 312 (415)
Q Consensus 241 ~~~~~l~~h~~~V~~l~~~--~~~l~sgs-~dg--~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~d--- 312 (415)
+. +.+..+........|+ ++.|+-.+ ..+ .|++.|+..+.. ..+..... ....|+|||+.|+.....
T Consensus 268 ~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~--~rlt~~g~--~~~~~SPDG~~Ia~~~~~~~~ 342 (419)
T PRK04043 268 TL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSV--EQVVFHGK--NNSSVSTYKNYIVYSSRETNN 342 (419)
T ss_pred cE-EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCe--EeCccCCC--cCceECCCCCEEEEEEcCCCc
Confidence 53 3444344333445687 44444443 444 588888887652 22221111 124899999998876543
Q ss_pred ------CcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCc
Q 014934 313 ------NRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNT 369 (415)
Q Consensus 313 ------g~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~ 369 (415)
..|++.|+.++.. ..+... .......|+|+|+.++.+........|.+.++....
T Consensus 343 ~~~~~~~~I~v~d~~~g~~-~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~ 403 (419)
T PRK04043 343 EFGKNTFNLYLISTNSDYI-RRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNK 403 (419)
T ss_pred ccCCCCcEEEEEECCCCCe-EECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCCe
Confidence 3688899988754 344333 233458999999977776532123347777775543
No 277
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.89 E-value=5.2e-07 Score=87.73 Aligned_cols=237 Identities=15% Similarity=0.264 Sum_probs=152.0
Q ss_pred ceeEeecCC-CcEEEE-E-----------cCCeEEEEECCCCCeEEeEec--CCCCCeEEEEEcCCCCeEEEEECCCcEE
Q 014934 169 YLNLVDWSS-HNVLAV-G-----------LGNCVYLWNACSSKVTKLCDL--GIDDSVCSVGWANRNTHLAVGTSHGKVQ 233 (415)
Q Consensus 169 ~i~~l~ws~-~~~la~-~-----------~d~~V~iwd~~~~~~~~~~~~--~~~~~V~~v~~sp~g~~la~g~~dg~V~ 233 (415)
++..++||| .++|++ + .+..+.|||+.+|...+.+.. +....-.-+.||.|++++|--..+ .|.
T Consensus 251 ~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sis 329 (698)
T KOG2314|consen 251 GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SIS 329 (698)
T ss_pred CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccc-eEE
Confidence 366778888 555544 2 125799999999998887765 222223457899999999987775 699
Q ss_pred EEECCCCeeeEEecCCCccEEEEEeeC--CEEEEEeC--C---CcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEE
Q 014934 234 IWDASRCKRVRTMEGHRLRVGALAWSS--SLLSSGSR--D---KSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNREL 306 (415)
Q Consensus 234 iwd~~~~~~~~~l~~h~~~V~~l~~~~--~~l~sgs~--d---g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 306 (415)
||+..+...+..-.-.-..|....|+| ++|+-=.. + ..+.+..+.++. .++...-|.-.=|.|-|-.+|.+|
T Consensus 330 IyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~-~iRt~nlfnVsDckLhWQk~gdyL 408 (698)
T KOG2314|consen 330 IYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKR-EIRTKNLFNVSDCKLHWQKSGDYL 408 (698)
T ss_pred EEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccc-eeeeccceeeeccEEEeccCCcEE
Confidence 999776443322222335577788885 33332211 1 124444444443 234434444455678888899998
Q ss_pred EEE----------eCCCcEEEEECCCCc-eeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCC-Cc---EE
Q 014934 307 ASG----------GNDNRLFVWNQHSTQ-PVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTT-NT---HL 371 (415)
Q Consensus 307 asg----------~~dg~I~iwd~~~~~-~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t-~~---~~ 371 (415)
+.- +.-..+-|+.++... ++..+ .-...|.+.+|-|.|..+.+..|.+...++.+|.+.+ .. ++
T Consensus 409 cvkvdR~tK~~~~g~f~n~eIfrireKdIpve~v-elke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lV 487 (698)
T KOG2314|consen 409 CVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVV-ELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLV 487 (698)
T ss_pred EEEEEeeccccccceEeeEEEEEeeccCCCceee-ecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhh
Confidence 762 111235566665543 33333 4567889999999998777766655678899998873 32 23
Q ss_pred EEeeCCCCEEEEEECCCCCeEEEEE-ecCCCcEEEEECC
Q 014934 372 SCMDTGSQVCNLVWSKNVNELVSTH-GYSQNQIIVWRYP 409 (415)
Q Consensus 372 ~~~~~~~~V~~l~~s~~~~~l~s~~-g~~dg~I~vw~~~ 409 (415)
..++ ....+.+.|+|.|++++++. ++..|.+.++|..
T Consensus 488 k~~d-k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~ 525 (698)
T KOG2314|consen 488 KELD-KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTD 525 (698)
T ss_pred hhhc-ccccceEEEcCCCcEEEEEEecccccceEEEecc
Confidence 3333 25567899999999988742 3457889999976
No 278
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.89 E-value=5e-08 Score=97.10 Aligned_cols=226 Identities=15% Similarity=0.313 Sum_probs=161.8
Q ss_pred CCCCcceeEeecCC-CcEEEEE-cCCeEEEEECCCCC---------------eEEeEecCCCCCeEEEEEcCCCCeEEEE
Q 014934 164 LQDDFYLNLVDWSS-HNVLAVG-LGNCVYLWNACSSK---------------VTKLCDLGIDDSVCSVGWANRNTHLAVG 226 (415)
Q Consensus 164 l~~~~~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~---------------~~~~~~~~~~~~V~~v~~sp~g~~la~g 226 (415)
+.+...++|+.|+. .++||+| .||.+++..+.+.. ..+.++ +|.+.|.-+.|+.+.+.|-+.
T Consensus 11 iPnnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLe-GH~~sV~vvTWNe~~QKLTtS 89 (1189)
T KOG2041|consen 11 IPNNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLE-GHNASVMVVTWNENNQKLTTS 89 (1189)
T ss_pred CCCCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhc-cCcceEEEEEecccccccccc
Confidence 34456789999999 7888888 57888888765421 112222 899999999999999999999
Q ss_pred ECCCcEEEEECCCCeeeEEec--CCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCC
Q 014934 227 TSHGKVQIWDASRCKRVRTME--GHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYD 302 (415)
Q Consensus 227 ~~dg~V~iwd~~~~~~~~~l~--~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd 302 (415)
..+|.|.+|-+-.+.-...+. .....|.+|+|+ |..++..-.||.|.+=.+....-.-+.+++ .....+.|++|
T Consensus 90 Dt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg--~~l~hv~ws~D 167 (1189)
T KOG2041|consen 90 DTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG--QLLAHVLWSED 167 (1189)
T ss_pred CCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch--heccceeeccc
Confidence 999999999987775443332 345678999998 788888899999888777655421222222 23457889999
Q ss_pred CCEEEEEeCCCcEEEEECCCC-------ceeEEe----ccCCCcEEEEEEc--------CCCCcEEEEEcCCCCCeEEEE
Q 014934 303 NRELASGGNDNRLFVWNQHST-------QPVLKY----CEHTAAVKAIAWS--------PHLHGLLASGGGTADRCIRFW 363 (415)
Q Consensus 303 g~~lasg~~dg~I~iwd~~~~-------~~~~~~----~~h~~~V~~l~~s--------p~~~~llasggg~~d~~I~iw 363 (415)
.+.++.+-.+|.+.+||.... .+.... ......|..+.|. |+.. .|+.+- ..|.+.+.
T Consensus 168 ~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP-~lavcy--~nGr~QiM 244 (1189)
T KOG2041|consen 168 LEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRP-RLAVCY--ANGRMQIM 244 (1189)
T ss_pred HHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCC-EEEEEE--cCceehhh
Confidence 999988888999999997532 111111 1122235566664 3555 445443 67888887
Q ss_pred ECCCCcEEEEeeCCCCEEEEEECCCCCeEEEE
Q 014934 364 NTTTNTHLSCMDTGSQVCNLVWSKNVNELVST 395 (415)
Q Consensus 364 d~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~ 395 (415)
.-.+......++++-.+.++.|+++|..|+++
T Consensus 245 R~eND~~Pvv~dtgm~~vgakWnh~G~vLAvc 276 (1189)
T KOG2041|consen 245 RSENDPEPVVVDTGMKIVGAKWNHNGAVLAVC 276 (1189)
T ss_pred hhcCCCCCeEEecccEeecceecCCCcEEEEc
Confidence 66666656677888899999999999999986
No 279
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.87 E-value=1.1e-06 Score=86.28 Aligned_cols=222 Identities=15% Similarity=0.084 Sum_probs=138.1
Q ss_pred CcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEecCCCccEEEEE
Q 014934 178 HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALA 257 (415)
Q Consensus 178 ~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~ 257 (415)
+.+++.+.++.|+-+|..+|+..-...+.. ....... .++..+++++.+|.|..+|..+++.+-.............
T Consensus 66 ~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~-~~~~~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~ 142 (377)
T TIGR03300 66 GKVYAADADGTVVALDAETGKRLWRVDLDE-RLSGGVG--ADGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPL 142 (377)
T ss_pred CEEEEECCCCeEEEEEccCCcEeeeecCCC-CcccceE--EcCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCE
Confidence 344444567899999999999876655432 1111222 2567888899999999999999987765543222222223
Q ss_pred eeCCEEEEEeCCCcEEEEECCCCCccEEEeccccCCe-----EEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEeccC
Q 014934 258 WSSSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEV-----CGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEH 332 (415)
Q Consensus 258 ~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V-----~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~~h 332 (415)
..++.++.++.+|.|+.+|.++++. +-........+ .+... .+..++.+..++.+..+|+++++.+.+....
T Consensus 143 v~~~~v~v~~~~g~l~a~d~~tG~~-~W~~~~~~~~~~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~ 219 (377)
T TIGR03300 143 VANGLVVVRTNDGRLTALDAATGER-LWTYSRVTPALTLRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQRVA 219 (377)
T ss_pred EECCEEEEECCCCeEEEEEcCCCce-eeEEccCCCceeecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeeccc
Confidence 3467888888999999999988873 33322211111 11112 2346778888999999999999877654311
Q ss_pred CC----c---EEEEEEcC--CCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEEEEecCCCcE
Q 014934 333 TA----A---VKAIAWSP--HLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQI 403 (415)
Q Consensus 333 ~~----~---V~~l~~sp--~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~dg~I 403 (415)
.. . +..+.-+| .+..+++++ .++.+..||..+|+.+........ .... ..+..+++ +..+|.|
T Consensus 220 ~~~g~~~~~~~~~~~~~p~~~~~~vy~~~---~~g~l~a~d~~tG~~~W~~~~~~~-~~p~--~~~~~vyv--~~~~G~l 291 (377)
T TIGR03300 220 LPKGRTELERLVDVDGDPVVDGGQVYAVS---YQGRVAALDLRSGRVLWKRDASSY-QGPA--VDDNRLYV--TDADGVV 291 (377)
T ss_pred cCCCCCchhhhhccCCccEEECCEEEEEE---cCCEEEEEECCCCcEEEeeccCCc-cCce--EeCCEEEE--ECCCCeE
Confidence 00 0 00010011 133455544 589999999999998876653321 1122 24556666 4578899
Q ss_pred EEEECCCCcc
Q 014934 404 IVWRYPTMSK 413 (415)
Q Consensus 404 ~vw~~~s~~~ 413 (415)
..+|..+++.
T Consensus 292 ~~~d~~tG~~ 301 (377)
T TIGR03300 292 VALDRRSGSE 301 (377)
T ss_pred EEEECCCCcE
Confidence 9998877654
No 280
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.87 E-value=5.9e-08 Score=99.10 Aligned_cols=181 Identities=17% Similarity=0.230 Sum_probs=142.2
Q ss_pred CCCeEEEEECCCcEEEEECCCCeeeEEecCCCccEEEEEeeCCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEE
Q 014934 219 RNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLK 298 (415)
Q Consensus 219 ~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~ 298 (415)
++..++.|+....+..+|+.+.+..+...-..+.|.-|..+++.+++|...|+|.+.|.++.+ .++++.+|.+.|..+.
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~-~iht~~aHs~siSDfD 224 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYNNRNLFCGDTRGTVFLRDPNSFE-TIHTFDAHSGSISDFD 224 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEecCcEEEeecccceEEeecCCcCc-eeeeeeccccceeeee
Confidence 455677788888899999999888877766565699999999999999999999999999887 6899999999998655
Q ss_pred EeCCCCEEEEEeCC---------CcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCC--
Q 014934 299 WSYDNRELASGGND---------NRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTT-- 367 (415)
Q Consensus 299 ~spdg~~lasg~~d---------g~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t-- 367 (415)
-.|++|+++|.. .-|+|||++..+.+.-+.-+.++ .-+.|+|.-...++..+ ..|...+-|..+
T Consensus 225 --v~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S--~sGq~q~vd~~~ls 299 (1118)
T KOG1275|consen 225 --VQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTS--QSGQFQFVDTATLS 299 (1118)
T ss_pred --ccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEe--cccceeeccccccC
Confidence 469999998864 45899999988766555444433 55778887655555555 678888888432
Q ss_pred -C-cEEEEee-CCCCEEEEEECCCCCeEEEEEecCCCcEEEEE
Q 014934 368 -N-THLSCMD-TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWR 407 (415)
Q Consensus 368 -~-~~~~~~~-~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~ 407 (415)
. ..+..+. .++.+..++++++++.|+. |..+|.|.+|.
T Consensus 300 NP~~~~~~v~p~~s~i~~fDiSsn~~alaf--gd~~g~v~~wa 340 (1118)
T KOG1275|consen 300 NPPAGVKMVNPNGSGISAFDISSNGDALAF--GDHEGHVNLWA 340 (1118)
T ss_pred CCccceeEEccCCCcceeEEecCCCceEEE--ecccCcEeeec
Confidence 2 1223333 5667999999999999999 88999999998
No 281
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.86 E-value=1e-08 Score=94.10 Aligned_cols=167 Identities=19% Similarity=0.311 Sum_probs=122.2
Q ss_pred EEEcC--CCCeEEEEECCCcEEEEECCCCeeeEEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCC----CccEE
Q 014934 214 VGWAN--RNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQ----EDFVS 285 (415)
Q Consensus 214 v~~sp--~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~----~~~~~ 285 (415)
++|+- .|-++++|. +-.|-+-|++++-. ..|. ..+.|.++.|. +++++.|.++|.|..+|+|.+ ..+.+
T Consensus 217 CawSlni~gyhfs~G~-sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~ 293 (425)
T KOG2695|consen 217 CAWSLNIMGYHFSVGL-SQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQ 293 (425)
T ss_pred hhhhhccceeeecccc-cceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceE
Confidence 36764 355655554 44688889887632 2333 56778888887 589999999999999999976 22333
Q ss_pred EeccccCCeEEEEEeC-CCCEEEEEeCCCcEEEEECCCCce---eEEeccCCCcEEEEEE--cCCCCcEEEEEcCCCCCe
Q 014934 286 KLSGHKSEVCGLKWSY-DNRELASGGNDNRLFVWNQHSTQP---VLKYCEHTAAVKAIAW--SPHLHGLLASGGGTADRC 359 (415)
Q Consensus 286 ~~~~h~~~V~~l~~sp-dg~~lasg~~dg~I~iwd~~~~~~---~~~~~~h~~~V~~l~~--sp~~~~llasggg~~d~~ 359 (415)
.+ -|...|+++..-. ++++|.+.+.+|+|.+||++.-++ +.++++|...-.-+-+ .+.. .+++++| .|..
T Consensus 294 rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~ee-g~I~s~G--dDcy 369 (425)
T KOG2695|consen 294 RL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEE-GSIFSVG--DDCY 369 (425)
T ss_pred EE-EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeeccccccccccccccccc-ceEEEcc--CeeE
Confidence 33 4889999998876 788999999999999999987666 8999998754433332 3433 4666666 8999
Q ss_pred EEEEECCCCcEEEEeeCCC-----CEEEEEECC
Q 014934 360 IRFWNTTTNTHLSCMDTGS-----QVCNLVWSK 387 (415)
Q Consensus 360 I~iwd~~t~~~~~~~~~~~-----~V~~l~~s~ 387 (415)
.|||.+..|.++.++.... .+.+++|..
T Consensus 370 tRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~s 402 (425)
T KOG2695|consen 370 TRIWSLDSGHLLCTIPFPYSASEVDIPSVAFDS 402 (425)
T ss_pred EEEEecccCceeeccCCCCccccccccceehhc
Confidence 9999999999999887433 344555543
No 282
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.86 E-value=8.4e-07 Score=87.21 Aligned_cols=221 Identities=16% Similarity=0.057 Sum_probs=139.4
Q ss_pred CcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEecCCCccE----
Q 014934 178 HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRV---- 253 (415)
Q Consensus 178 ~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~~~V---- 253 (415)
+.+++.+.++.|+.+|..+|++.-..... +.+.+.-.. .+..+++++.+|.|..||.++++.+-.+......+
T Consensus 106 ~~v~v~~~~g~l~ald~~tG~~~W~~~~~--~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~ 182 (377)
T TIGR03300 106 GLVFVGTEKGEVIALDAEDGKELWRAKLS--SEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRG 182 (377)
T ss_pred CEEEEEcCCCEEEEEECCCCcEeeeeccC--ceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecC
Confidence 44555557899999999999987655432 233221111 35567778889999999999998776655332211
Q ss_pred -EEEEeeCCEEEEEeCCCcEEEEECCCCCccEEEecccc---CC------e-EEEEEeCCCCEEEEEeCCCcEEEEECCC
Q 014934 254 -GALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLSGHK---SE------V-CGLKWSYDNRELASGGNDNRLFVWNQHS 322 (415)
Q Consensus 254 -~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~---~~------V-~~l~~spdg~~lasg~~dg~I~iwd~~~ 322 (415)
......++.++.+..++.+..+|.+++......-.... .. + ....+ .+..+.+++.+|.++.||..+
T Consensus 183 ~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~~g~l~a~d~~t 260 (377)
T TIGR03300 183 SASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV--DGGQVYAVSYQGRVAALDLRS 260 (377)
T ss_pred CCCCEEECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE--ECCEEEEEEcCCEEEEEECCC
Confidence 11222356788888999999999988763221111100 00 1 11111 355777888899999999999
Q ss_pred CceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee-CCC-CEEEEEECCCCCeEEEEEecCC
Q 014934 323 TQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGS-QVCNLVWSKNVNELVSTHGYSQ 400 (415)
Q Consensus 323 ~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~-~~~-~V~~l~~s~~~~~l~s~~g~~d 400 (415)
++.+..... . ....... .+..+++.. .++.|..+|..+|+.+.... ... ....... .+..|++ +..+
T Consensus 261 G~~~W~~~~-~-~~~~p~~--~~~~vyv~~---~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~--~~~~ 329 (377)
T TIGR03300 261 GRVLWKRDA-S-SYQGPAV--DDNRLYVTD---ADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVV--GDFE 329 (377)
T ss_pred CcEEEeecc-C-CccCceE--eCCEEEEEC---CCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEE--EeCC
Confidence 988776642 1 1122222 244455543 69999999999999876653 222 2222222 3567777 6789
Q ss_pred CcEEEEECCCCccc
Q 014934 401 NQIIVWRYPTMSKV 414 (415)
Q Consensus 401 g~I~vw~~~s~~~l 414 (415)
|.|+++|..+++.+
T Consensus 330 G~l~~~d~~tG~~~ 343 (377)
T TIGR03300 330 GYLHWLSREDGSFV 343 (377)
T ss_pred CEEEEEECCCCCEE
Confidence 99999998887653
No 283
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.84 E-value=3.4e-08 Score=89.63 Aligned_cols=201 Identities=15% Similarity=0.288 Sum_probs=141.5
Q ss_pred CCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCe-----eeEEecCCC------------ccEEEEEee----CCEEE
Q 014934 206 GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCK-----RVRTMEGHR------------LRVGALAWS----SSLLS 264 (415)
Q Consensus 206 ~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~-----~~~~l~~h~------------~~V~~l~~~----~~~l~ 264 (415)
...+.|++|.|...|.+|++|...|.|.+|.-.... ....+++|. ..|..+.|. -..++
T Consensus 24 tead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFL 103 (460)
T COG5170 24 TEADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFL 103 (460)
T ss_pred cccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEE
Confidence 346789999999999999999999999999865432 223344453 468888887 24667
Q ss_pred EEeCCCcEEEEECCCCCc-----------------------------------------cEE-EeccccCCeEEEEEeCC
Q 014934 265 SGSRDKSILQRDIRAQED-----------------------------------------FVS-KLSGHKSEVCGLKWSYD 302 (415)
Q Consensus 265 sgs~dg~I~iwd~~~~~~-----------------------------------------~~~-~~~~h~~~V~~l~~spd 302 (415)
..+.|++|++|.+....- +.+ .-..|...|.++.++.|
T Consensus 104 lstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD 183 (460)
T COG5170 104 LSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSD 183 (460)
T ss_pred EecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCc
Confidence 777999999999865410 000 11357777899999999
Q ss_pred CCEEEEEeCCCcEEEEECCCCce---eEEeccCC-----CcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEE---
Q 014934 303 NRELASGGNDNRLFVWNQHSTQP---VLKYCEHT-----AAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHL--- 371 (415)
Q Consensus 303 g~~lasg~~dg~I~iwd~~~~~~---~~~~~~h~-----~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~--- 371 (415)
...++++ .|-+|.+|++.-... +.-++.|. .-|++..|+|....++.-++ ..|.|++-|++...+.
T Consensus 184 ~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSs--SkG~Ikl~DlRq~alcdn~ 260 (460)
T COG5170 184 KETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSS--SKGEIKLNDLRQSALCDNS 260 (460)
T ss_pred hheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEec--CCCcEEehhhhhhhhccCc
Confidence 8888876 467899999864322 22233443 45788899998776666555 6899999999843211
Q ss_pred ---E--Ee---e------CCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCCc
Q 014934 372 ---S--CM---D------TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMS 412 (415)
Q Consensus 372 ---~--~~---~------~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~ 412 (415)
. .+ + .-+.|..+.|+++|+++++ - +-.+++|||+.--+
T Consensus 261 ~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIls--R-dyltvkiwDvnm~k 312 (460)
T COG5170 261 KKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILS--R-DYLTVKIWDVNMAK 312 (460)
T ss_pred hhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEE--e-ccceEEEEeccccc
Confidence 1 01 1 1256888999999999998 3 45699999987543
No 284
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.84 E-value=1.2e-05 Score=74.86 Aligned_cols=237 Identities=13% Similarity=0.074 Sum_probs=152.1
Q ss_pred eeEeecCC-CcEEEEE-c---CCeEEEE--ECCCCCeEEeEec-CCCCCeEEEEEcCCCCeEEEEEC-CCcEEEEECCC-
Q 014934 170 LNLVDWSS-HNVLAVG-L---GNCVYLW--NACSSKVTKLCDL-GIDDSVCSVGWANRNTHLAVGTS-HGKVQIWDASR- 239 (415)
Q Consensus 170 i~~l~ws~-~~~la~~-~---d~~V~iw--d~~~~~~~~~~~~-~~~~~V~~v~~sp~g~~la~g~~-dg~V~iwd~~~- 239 (415)
.+-|.|++ ++.|.++ . ++.|..| |-.+|++..+-.. ......+.|+++++|++|+++.. .|.|.++-++.
T Consensus 42 ptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~d 121 (346)
T COG2706 42 PTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQAD 121 (346)
T ss_pred CceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccC
Confidence 34568888 4455555 2 3455554 4445776555443 22344589999999999999875 57899999865
Q ss_pred CeeeE--EecCCCcc----------EEEEEeeC--CEEEEEeC-CCcEEEEECCCCCcc---EEEeccccCCeEEEEEeC
Q 014934 240 CKRVR--TMEGHRLR----------VGALAWSS--SLLSSGSR-DKSILQRDIRAQEDF---VSKLSGHKSEVCGLKWSY 301 (415)
Q Consensus 240 ~~~~~--~l~~h~~~----------V~~l~~~~--~~l~sgs~-dg~I~iwd~~~~~~~---~~~~~~h~~~V~~l~~sp 301 (415)
|.... .+..|.+. +....+.| ++|++.+- --.|.+|++..+.-. ...+ .....-..|.|+|
T Consensus 122 G~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v-~~G~GPRHi~FHp 200 (346)
T COG2706 122 GSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEV-KPGAGPRHIVFHP 200 (346)
T ss_pred CccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCcccccccccc-CCCCCcceEEEcC
Confidence 32211 12224444 66666663 56666642 235899999855411 1111 3345678899999
Q ss_pred CCCEEEEEe-CCCcEEEEECCCC-ceeEEecc---------CCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCC-c
Q 014934 302 DNRELASGG-NDNRLFVWNQHST-QPVLKYCE---------HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTN-T 369 (415)
Q Consensus 302 dg~~lasg~-~dg~I~iwd~~~~-~~~~~~~~---------h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~-~ 369 (415)
++++....+ -+++|.+|..... ..+..++. -.....+|..+++|++|+++-= ....|.+|.+... .
T Consensus 201 n~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNR--g~dsI~~f~V~~~~g 278 (346)
T COG2706 201 NGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNR--GHDSIAVFSVDPDGG 278 (346)
T ss_pred CCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecC--CCCeEEEEEEcCCCC
Confidence 999977655 5889999998763 22222221 2345678999999998888764 3448888877542 2
Q ss_pred EEEEe---eCCCC-EEEEEECCCCCeEEEEEecCCCcEEEEECCC
Q 014934 370 HLSCM---DTGSQ-VCNLVWSKNVNELVSTHGYSQNQIIVWRYPT 410 (415)
Q Consensus 370 ~~~~~---~~~~~-V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s 410 (415)
.+..+ .++.+ -..+.|++.+++|++++- ....|.+|....
T Consensus 279 ~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q-~sd~i~vf~~d~ 322 (346)
T COG2706 279 KLELVGITPTEGQFPRDFNINPSGRFLIAANQ-KSDNITVFERDK 322 (346)
T ss_pred EEEEEEEeccCCcCCccceeCCCCCEEEEEcc-CCCcEEEEEEcC
Confidence 23322 24444 788999999999999854 445699988653
No 285
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.83 E-value=1.2e-08 Score=98.63 Aligned_cols=165 Identities=16% Similarity=0.237 Sum_probs=126.9
Q ss_pred eEEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCC------ccEEEeccccCCeEEEEEeCCCCEEEEEeCCCc
Q 014934 243 VRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQE------DFVSKLSGHKSEVCGLKWSYDNRELASGGNDNR 314 (415)
Q Consensus 243 ~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~------~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~ 314 (415)
+..+.+|+..|..++-- .+-+++++.|++|++|.++... .+..++..|+.+|..+.|-.+-++++++ ||.
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~g 805 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGG 805 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCc
Confidence 45577899998888653 5789999999999999987533 2456788999999999999998888876 788
Q ss_pred EEEEECCCCceeEEecc--CCCcEEEEEEcCC-CCcEEEEEcCCCCCeEEEEECCCCcEEEEeeC------CCCEEEEEE
Q 014934 315 LFVWNQHSTQPVLKYCE--HTAAVKAIAWSPH-LHGLLASGGGTADRCIRFWNTTTNTHLSCMDT------GSQVCNLVW 385 (415)
Q Consensus 315 I~iwd~~~~~~~~~~~~--h~~~V~~l~~sp~-~~~llasggg~~d~~I~iwd~~t~~~~~~~~~------~~~V~~l~~ 385 (415)
|++||.--++++.++.. ..+++..+..-+. .+.++..+ .+...+|+++|.+.++...+++. ..-+.+++.
T Consensus 806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAg-csaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaV 884 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAG-CSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAV 884 (1034)
T ss_pred ceeecccccchhHhhhcCcccCCCceeEecccCcchheeee-ccchhhheeeecccccceeeEEeccCCCCchheeEEEe
Confidence 99999888877765432 2334444444444 33344443 24899999999999987776652 245788999
Q ss_pred CCCCCeEEEEEecCCCcEEEEECCCCc
Q 014934 386 SKNVNELVSTHGYSQNQIIVWRYPTMS 412 (415)
Q Consensus 386 s~~~~~l~s~~g~~dg~I~vw~~~s~~ 412 (415)
.+.|+++++ +-+.|+|.+.|..+++
T Consensus 885 a~~GN~lAa--~LSnGci~~LDaR~G~ 909 (1034)
T KOG4190|consen 885 ADKGNKLAA--ALSNGCIAILDARNGK 909 (1034)
T ss_pred ccCcchhhH--HhcCCcEEEEecCCCc
Confidence 999999999 7889999999988876
No 286
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.82 E-value=2e-06 Score=93.04 Aligned_cols=195 Identities=16% Similarity=0.241 Sum_probs=126.9
Q ss_pred CeEEEEEcCCCCeEEEEEC---C---CcEEEEECCCCeeeEEecCCCccEEEEEee--CCEEEEEeC---CCcEEEEECC
Q 014934 210 SVCSVGWANRNTHLAVGTS---H---GKVQIWDASRCKRVRTMEGHRLRVGALAWS--SSLLSSGSR---DKSILQRDIR 278 (415)
Q Consensus 210 ~V~~v~~sp~g~~la~g~~---d---g~V~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~---dg~I~iwd~~ 278 (415)
.-..|+|-.||.++|+.+. . ..++||+-+ |....+-+.-.+--.+++|. |+++++..+ ...|.+|.-.
T Consensus 211 ~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErN 289 (928)
T PF04762_consen 211 GRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERN 289 (928)
T ss_pred CceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecC
Confidence 4567899999999999875 3 368999965 65555444444455678997 577777654 2346666543
Q ss_pred CCCccEEEec--cccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEec---cCCCcEEEEEEcCCCCcEEEEEc
Q 014934 279 AQEDFVSKLS--GHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYC---EHTAAVKAIAWSPHLHGLLASGG 353 (415)
Q Consensus 279 ~~~~~~~~~~--~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~---~h~~~V~~l~~sp~~~~llasgg 353 (415)
.-.+-...+. .....|..|.|++|+..||..-.|. |.+|-..+..-..+.+ .....+..+.|+|.....|....
T Consensus 290 GLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t 368 (928)
T PF04762_consen 290 GLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLT 368 (928)
T ss_pred CcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEe
Confidence 3222112222 3456799999999999999987665 9999998875433322 22334556999998765444443
Q ss_pred CCCCCeEEEEEC----CCC----------------cE----------------EEEeeCCCCEEEEEECCCCCeEEEEEe
Q 014934 354 GTADRCIRFWNT----TTN----------------TH----------------LSCMDTGSQVCNLVWSKNVNELVSTHG 397 (415)
Q Consensus 354 g~~d~~I~iwd~----~t~----------------~~----------------~~~~~~~~~V~~l~~s~~~~~l~s~~g 397 (415)
.++.+..++. ..+ .. ...+...+.|..++|++++..+++ -
T Consensus 369 --~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~av--l 444 (928)
T PF04762_consen 369 --SNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAV--L 444 (928)
T ss_pred --cCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEE--E
Confidence 3344443332 211 11 122334578999999999987777 4
Q ss_pred cCCCcEEEEECCC
Q 014934 398 YSQNQIIVWRYPT 410 (415)
Q Consensus 398 ~~dg~I~vw~~~s 410 (415)
..||.|.+|..+.
T Consensus 445 ~~d~~l~~~~~~~ 457 (928)
T PF04762_consen 445 TSDGSLSIYEWDL 457 (928)
T ss_pred ECCCCEEEEEecC
Confidence 5799999998654
No 287
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.82 E-value=1.5e-05 Score=74.09 Aligned_cols=215 Identities=13% Similarity=0.125 Sum_probs=147.7
Q ss_pred eecCC--CcEEEEEc--CCeEEEEECCCCCeEEeEecCCCCC-eEEEEEcCCCCeEEEEE-----CCCcEEEEECC-CCe
Q 014934 173 VDWSS--HNVLAVGL--GNCVYLWNACSSKVTKLCDLGIDDS-VCSVGWANRNTHLAVGT-----SHGKVQIWDAS-RCK 241 (415)
Q Consensus 173 l~ws~--~~~la~~~--d~~V~iwd~~~~~~~~~~~~~~~~~-V~~v~~sp~g~~la~g~-----~dg~V~iwd~~-~~~ 241 (415)
++.+| ...++++- +....+||..+++....+....... --.-.|++||++|.+.- ..|.|-|||.. +.+
T Consensus 10 ~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ 89 (305)
T PF07433_consen 10 VAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYR 89 (305)
T ss_pred eeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcE
Confidence 45566 56777774 5679999999999887775322221 22467999999998863 35889999998 667
Q ss_pred eeEEecCCCccEEEEEee--CCEEEEE------------------eCCCcEEEEECCCCCccEEE--e--ccccCCeEEE
Q 014934 242 RVRTMEGHRLRVGALAWS--SSLLSSG------------------SRDKSILQRDIRAQEDFVSK--L--SGHKSEVCGL 297 (415)
Q Consensus 242 ~~~~l~~h~~~V~~l~~~--~~~l~sg------------------s~dg~I~iwd~~~~~~~~~~--~--~~h~~~V~~l 297 (415)
.+..+..|.-.-..+.+. +..|+++ ..+-.+...|.++++ .+.. + .-|...|..|
T Consensus 90 ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~-ll~q~~Lp~~~~~lSiRHL 168 (305)
T PF07433_consen 90 RIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGA-LLEQVELPPDLHQLSIRHL 168 (305)
T ss_pred EEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCc-eeeeeecCccccccceeeE
Confidence 788887766555566665 3355554 223345666666665 3333 3 3477789999
Q ss_pred EEeCCCCEEEEEeCCC-------cEEEEECCCCceeEEec-------cCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEE
Q 014934 298 KWSYDNRELASGGNDN-------RLFVWNQHSTQPVLKYC-------EHTAAVKAIAWSPHLHGLLASGGGTADRCIRFW 363 (415)
Q Consensus 298 ~~spdg~~lasg~~dg-------~I~iwd~~~~~~~~~~~-------~h~~~V~~l~~sp~~~~llasggg~~d~~I~iw 363 (415)
++.++|..++..-..| .|.+++... .+..+. .-...+-+|++++++..+.+|+- .-+++.+|
T Consensus 169 a~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsP--rGg~~~~~ 244 (305)
T PF07433_consen 169 AVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG--ALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSP--RGGRVAVW 244 (305)
T ss_pred EecCCCcEEEEEecCCCCCccCCeEEEEcCCC--cceeccCChHHHHhhCCceEEEEEeCCCCEEEEECC--CCCEEEEE
Confidence 9999997766654443 244444332 222222 23467899999999987777775 78999999
Q ss_pred ECCCCcEEEEeeCCCCEEEEEECCCCCeEEE
Q 014934 364 NTTTNTHLSCMDTGSQVCNLVWSKNVNELVS 394 (415)
Q Consensus 364 d~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s 394 (415)
|..+++.+... .-..+|.++-..++ ++++
T Consensus 245 d~~tg~~~~~~-~l~D~cGva~~~~~-f~~s 273 (305)
T PF07433_consen 245 DAATGRLLGSV-PLPDACGVAPTDDG-FLVS 273 (305)
T ss_pred ECCCCCEeecc-ccCceeeeeecCCc-eEEe
Confidence 99999988665 34568889988888 5555
No 288
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.81 E-value=2.4e-06 Score=93.88 Aligned_cols=197 Identities=11% Similarity=0.110 Sum_probs=130.5
Q ss_pred eeEeecCC-CcEEEEE--cCCeEEEEECCCCCeEEeEecCC---------------CCCeEEEEEcC-CCCeEEEEECCC
Q 014934 170 LNLVDWSS-HNVLAVG--LGNCVYLWNACSSKVTKLCDLGI---------------DDSVCSVGWAN-RNTHLAVGTSHG 230 (415)
Q Consensus 170 i~~l~ws~-~~~la~~--~d~~V~iwd~~~~~~~~~~~~~~---------------~~~V~~v~~sp-~g~~la~g~~dg 230 (415)
...+++++ ++.|.++ ..+.|+++|..++.+..+...+. -.....|+++| ++..+++...++
T Consensus 626 P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~ 705 (1057)
T PLN02919 626 PQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQH 705 (1057)
T ss_pred CcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCC
Confidence 35677776 5655555 34679999988776544432110 11346899999 556666667788
Q ss_pred cEEEEECCCCeeeEEecC---------C------CccEEEEEeeC--C-EEEEEeCCCcEEEEECCCCCccEEE------
Q 014934 231 KVQIWDASRCKRVRTMEG---------H------RLRVGALAWSS--S-LLSSGSRDKSILQRDIRAQEDFVSK------ 286 (415)
Q Consensus 231 ~V~iwd~~~~~~~~~l~~---------h------~~~V~~l~~~~--~-~l~sgs~dg~I~iwd~~~~~~~~~~------ 286 (415)
.|++||..++... .+.+ + -.....|++++ + ++++-+.++.|++||+.++......
T Consensus 706 ~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~ 784 (1057)
T PLN02919 706 QIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTF 784 (1057)
T ss_pred eEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEeccccc
Confidence 9999998776532 2211 1 12345688873 4 5566667799999999865421110
Q ss_pred ------ec--------cccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEec-------------cCCCcEEEE
Q 014934 287 ------LS--------GHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYC-------------EHTAAVKAI 339 (415)
Q Consensus 287 ------~~--------~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~-------------~h~~~V~~l 339 (415)
+- ..-....+++++++|+++++-..+++|++||..++....... +.-.....|
T Consensus 785 ~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GI 864 (1057)
T PLN02919 785 SDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGL 864 (1057)
T ss_pred CcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEE
Confidence 00 001134689999999999998999999999998775543221 111246789
Q ss_pred EEcCCCCcEEEEEcCCCCCeEEEEECCCCcE
Q 014934 340 AWSPHLHGLLASGGGTADRCIRFWNTTTNTH 370 (415)
Q Consensus 340 ~~sp~~~~llasggg~~d~~I~iwd~~t~~~ 370 (415)
+++++|+ ++++.. .++.|++||+.+++.
T Consensus 865 avd~dG~-lyVaDt--~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 865 ALGENGR-LFVADT--NNSLIRYLDLNKGEA 892 (1057)
T ss_pred EEeCCCC-EEEEEC--CCCEEEEEECCCCcc
Confidence 9999997 777765 789999999998865
No 289
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.81 E-value=8e-08 Score=90.04 Aligned_cols=159 Identities=21% Similarity=0.215 Sum_probs=110.2
Q ss_pred eeEeecCC-CcEEEEEcC-CeEEEEECCCCCe-EEeEec-CCCCCeEEEEEcCCCCeEEEEECCCcEEEEEC---CCCee
Q 014934 170 LNLVDWSS-HNVLAVGLG-NCVYLWNACSSKV-TKLCDL-GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDA---SRCKR 242 (415)
Q Consensus 170 i~~l~ws~-~~~la~~~d-~~V~iwd~~~~~~-~~~~~~-~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~---~~~~~ 242 (415)
...+..++ +.+||++.+ ...++++...... .++... .....-+++.|..+.....++..-|.+.-+|+ ..+.+
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~ 144 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRC 144 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCc
Confidence 44455566 788888854 4555555444321 222211 22344566666666666666666665555554 43333
Q ss_pred eEEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEEC
Q 014934 243 VRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQ 320 (415)
Q Consensus 243 ~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~ 320 (415)
..+-||-..+.+++|+ +.+++++.+|..|++-.............||+.-|..++.-+ +..|++||.|++|++||+
T Consensus 145 -~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~-~~~LlS~sGD~tlr~Wd~ 222 (390)
T KOG3914|consen 145 -EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD-NYLLLSGSGDKTLRLWDI 222 (390)
T ss_pred -chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeecc-CceeeecCCCCcEEEEec
Confidence 3455799999999998 579999999999999887665533445668999999999875 556999999999999999
Q ss_pred CCCceeEEec
Q 014934 321 HSTQPVLKYC 330 (415)
Q Consensus 321 ~~~~~~~~~~ 330 (415)
++++.+.++.
T Consensus 223 ~sgk~L~t~d 232 (390)
T KOG3914|consen 223 TSGKLLDTCD 232 (390)
T ss_pred ccCCcccccc
Confidence 9999886653
No 290
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.78 E-value=3.3e-09 Score=107.48 Aligned_cols=188 Identities=16% Similarity=0.231 Sum_probs=141.3
Q ss_pred CCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEecCCCccEEEEEee--CCEEEE-EeCCC-cEEEEECCCCC
Q 014934 206 GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWS--SSLLSS-GSRDK-SILQRDIRAQE 281 (415)
Q Consensus 206 ~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~s-gs~dg-~I~iwd~~~~~ 281 (415)
.++...+|++|+.+.++|++|+..|.|++|++.+|.....+..|..+|+-+.-+ +..+++ .+... ...+|+...-.
T Consensus 1099 d~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~ 1178 (1516)
T KOG1832|consen 1099 DETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTG 1178 (1516)
T ss_pred ccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhcccccc
Confidence 567889999999999999999999999999999999999999999999999877 444444 43333 57789987654
Q ss_pred ccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEec-c---CCCcEEEEEEcCCCCcEEEEEcCCCC
Q 014934 282 DFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYC-E---HTAAVKAIAWSPHLHGLLASGGGTAD 357 (415)
Q Consensus 282 ~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~-~---h~~~V~~l~~sp~~~~llasggg~~d 357 (415)
...+.+. +-.++.|+..-..-+.|..-....|||+.++.++.++- + .+..-+...|+|+.. |+. .|
T Consensus 1179 ~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~-LIl-----nd 1248 (1516)
T KOG1832|consen 1179 GPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDT-LIL-----ND 1248 (1516)
T ss_pred Ccccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcc-eEe-----eC
Confidence 4455544 45678898765555666666779999999998877742 1 222336788999987 665 46
Q ss_pred CeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCCc
Q 014934 358 RCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMS 412 (415)
Q Consensus 358 ~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~ 412 (415)
| .+||++..+.++.++.-+.-..=.|+|+|.+++. .+ .|||+.+.+
T Consensus 1249 G--vLWDvR~~~aIh~FD~ft~~~~G~FHP~g~eVII--NS-----EIwD~RTF~ 1294 (1516)
T KOG1832|consen 1249 G--VLWDVRIPEAIHRFDQFTDYGGGGFHPSGNEVII--NS-----EIWDMRTFK 1294 (1516)
T ss_pred c--eeeeeccHHHHhhhhhheecccccccCCCceEEe--ec-----hhhhhHHHH
Confidence 6 4899998887777764333334579999999988 33 389887754
No 291
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.77 E-value=1.1e-05 Score=77.58 Aligned_cols=217 Identities=11% Similarity=0.038 Sum_probs=127.6
Q ss_pred CeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEEC----------CCcEEEEECCCCeeeEEecCCCc-----
Q 014934 187 NCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTS----------HGKVQIWDASRCKRVRTMEGHRL----- 251 (415)
Q Consensus 187 ~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~----------dg~V~iwd~~~~~~~~~l~~h~~----- 251 (415)
+.|++.|..+.++...+..+.... .+ ++|||+.|.++.. +..|.+||..+.+.+..+.-...
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~--~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~ 103 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN--PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLV 103 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc--ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhc
Confidence 799999999999988887654333 34 9999998888766 67899999999999988763221
Q ss_pred --cEEEEEee--CCEEEEEe-C-CCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCC-Cc
Q 014934 252 --RVGALAWS--SSLLSSGS-R-DKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHS-TQ 324 (415)
Q Consensus 252 --~V~~l~~~--~~~l~sgs-~-dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~-~~ 324 (415)
....++++ +++|++.. . +..|.+.|+.+++ .+..+... ....-...+++..+ +-+.||......+.+ ++
T Consensus 104 ~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~k-vv~ei~vp-~~~~vy~t~e~~~~--~~~~Dg~~~~v~~d~~g~ 179 (352)
T TIGR02658 104 GTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKA-FVRMMDVP-DCYHIFPTANDTFF--MHCRDGSLAKVGYGTKGN 179 (352)
T ss_pred cCccceEEECCCCCEEEEecCCCCCEEEEEECCCCc-EEEEEeCC-CCcEEEEecCCccE--EEeecCceEEEEecCCCc
Confidence 11234444 67777665 3 6889999999887 45544431 11111222222221 222344433332221 11
Q ss_pred ee-E---EeccCCCcE-EEEEEcC-CCCcEEEEEcCCCCCeEEEEECCCC-----cEEEEeeC--------CCCEEEEEE
Q 014934 325 PV-L---KYCEHTAAV-KAIAWSP-HLHGLLASGGGTADRCIRFWNTTTN-----THLSCMDT--------GSQVCNLVW 385 (415)
Q Consensus 325 ~~-~---~~~~h~~~V-~~l~~sp-~~~~llasggg~~d~~I~iwd~~t~-----~~~~~~~~--------~~~V~~l~~ 385 (415)
.. . .+..-...+ ..-.|.+ ++..++++. .|.|.+.|+... +.+..+.. .....-+++
T Consensus 180 ~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~----eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~ 255 (352)
T TIGR02658 180 PKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTY----TGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAY 255 (352)
T ss_pred eEEeeeeeecCCccccccCCceEcCCCcEEEEec----CCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEE
Confidence 11 0 111100000 0003455 777676764 499999996443 33333211 122334999
Q ss_pred CCCCCeEEE-EEec-------CCCcEEEEECCCCccc
Q 014934 386 SKNVNELVS-THGY-------SQNQIIVWRYPTMSKV 414 (415)
Q Consensus 386 s~~~~~l~s-~~g~-------~dg~I~vw~~~s~~~l 414 (415)
+++++.+.+ .|+. ..+.|.++|..+.+.+
T Consensus 256 ~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi 292 (352)
T TIGR02658 256 HRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRL 292 (352)
T ss_pred cCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEE
Confidence 999999888 4432 2258999999887653
No 292
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.76 E-value=2e-07 Score=95.26 Aligned_cols=183 Identities=16% Similarity=0.201 Sum_probs=141.4
Q ss_pred cCCCcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEecCCCccEE
Q 014934 175 WSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVG 254 (415)
Q Consensus 175 ws~~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~ 254 (415)
-++..++.+|....+..+|..+.+..+...... ..|+-++ .+++.+.+|...|+|.+-|..+.+.++++..|++.|.
T Consensus 145 ~~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a-~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siS 221 (1118)
T KOG1275|consen 145 MGPSTLIMGGLQEKLIHIDLNTEKETRTTNVSA-SGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSIS 221 (1118)
T ss_pred cCCcceeecchhhheeeeecccceeeeeeeccC-CceEEEE--ecCcEEEeecccceEEeecCCcCceeeeeecccccee
Confidence 366788888888899999999998888776543 2355554 4688999999999999999999999999999999999
Q ss_pred EEEeeCCEEEEEeC---------CCcEEEEECCCCCccEEEeccccCCeEEEEEeCC-CCEEEEEeCCCcEEEEE---CC
Q 014934 255 ALAWSSSLLSSGSR---------DKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYD-NRELASGGNDNRLFVWN---QH 321 (415)
Q Consensus 255 ~l~~~~~~l~sgs~---------dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd-g~~lasg~~dg~I~iwd---~~ 321 (415)
++...++.|++++. |..|++||+|.... +..+.-+.++ .-+.|+|. ...+|+++..|...+-| +.
T Consensus 222 DfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmra-l~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~ls 299 (1118)
T KOG1275|consen 222 DFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRA-LSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLS 299 (1118)
T ss_pred eeeccCCeEEEeecccccccccccchhhhhhhhhhhc-cCCcccccCc-hhhhhcccccceEEEEecccceeeccccccC
Confidence 99999999999975 55689999998762 3333333332 34677774 35688889999999999 33
Q ss_pred CC-ceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEEC
Q 014934 322 ST-QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNT 365 (415)
Q Consensus 322 ~~-~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~ 365 (415)
+. ..+..+..-...+.++++++.+. .+|.|. .+|.|.+|--
T Consensus 300 NP~~~~~~v~p~~s~i~~fDiSsn~~-alafgd--~~g~v~~wa~ 341 (1118)
T KOG1275|consen 300 NPPAGVKMVNPNGSGISAFDISSNGD-ALAFGD--HEGHVNLWAD 341 (1118)
T ss_pred CCccceeEEccCCCcceeEEecCCCc-eEEEec--ccCcEeeecC
Confidence 33 22334444555699999999987 777766 8999999973
No 293
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.75 E-value=1.6e-06 Score=84.52 Aligned_cols=212 Identities=13% Similarity=0.184 Sum_probs=139.3
Q ss_pred eeEeecCCC---cEEEEE---cC---CeEEEEECCCCCeEEeEec--CCCCCeEEEEEcCCCC-eEEEEEC--C------
Q 014934 170 LNLVDWSSH---NVLAVG---LG---NCVYLWNACSSKVTKLCDL--GIDDSVCSVGWANRNT-HLAVGTS--H------ 229 (415)
Q Consensus 170 i~~l~ws~~---~~la~~---~d---~~V~iwd~~~~~~~~~~~~--~~~~~V~~v~~sp~g~-~la~g~~--d------ 229 (415)
++.+..||+ ..||+= .+ ..|+||...-......... -....=..+.|.+.|. +|+.++. |
T Consensus 168 i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SY 247 (566)
T KOG2315|consen 168 ITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASY 247 (566)
T ss_pred eeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccc
Confidence 667777774 455553 23 4699998763322222110 0012234567888776 3333222 2
Q ss_pred ---CcEEEEECCCCeeeEEecCCCccEEEEEeeC--CE--EEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCC
Q 014934 230 ---GKVQIWDASRCKRVRTMEGHRLRVGALAWSS--SL--LSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYD 302 (415)
Q Consensus 230 ---g~V~iwd~~~~~~~~~l~~h~~~V~~l~~~~--~~--l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd 302 (415)
.++++.+++...+...+. -.++|.++.|++ .. ++-|-.=-.+.++|++..- +..+ ..++-+++-|+|.
T Consensus 248 YGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~--v~df--~egpRN~~~fnp~ 322 (566)
T KOG2315|consen 248 YGEQTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKP--VFDF--PEGPRNTAFFNPH 322 (566)
T ss_pred cccceEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCE--eEeC--CCCCccceEECCC
Confidence 358888887444444444 578999999994 33 3345566789999998653 3333 4567888999999
Q ss_pred CCEEEEEeCC---CcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcC---CCCCeEEEEECCCCcEEEEeeC
Q 014934 303 NRELASGGND---NRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGG---TADRCIRFWNTTTNTHLSCMDT 376 (415)
Q Consensus 303 g~~lasg~~d---g~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg---~~d~~I~iwd~~t~~~~~~~~~ 376 (415)
|++|+.+|-+ |.|-|||+.+.+.+.++.... -+-+.|+|+|++++.+... ..|+.++||+.. |..+.....
T Consensus 323 g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~--tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt-G~~l~~~~f 399 (566)
T KOG2315|consen 323 GNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN--TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT-GSLLHEKMF 399 (566)
T ss_pred CCEEEEeecCCCCCceEEEeccchhhccccccCC--ceEEEEcCCCcEEEEEeccccEEecCCeEEEEec-Cceeehhhh
Confidence 9999887754 689999999988888876543 3558999999977765531 138889999974 666666555
Q ss_pred CCCEEEEEECCCC
Q 014934 377 GSQVCNLVWSKNV 389 (415)
Q Consensus 377 ~~~V~~l~~s~~~ 389 (415)
.+....+.|-|-.
T Consensus 400 ~sEL~qv~W~P~~ 412 (566)
T KOG2315|consen 400 KSELLQVEWRPFN 412 (566)
T ss_pred hHhHhheeeeecC
Confidence 5567778887643
No 294
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.75 E-value=2e-06 Score=76.80 Aligned_cols=186 Identities=12% Similarity=0.040 Sum_probs=126.0
Q ss_pred CCCeEEEEECCCcEEEEECCCCee-eEEecCCCccEEEE---EeeCCEEEEEeCCCcEEEEECCCCCccEEEeccccC--
Q 014934 219 RNTHLAVGTSHGKVQIWDASRCKR-VRTMEGHRLRVGAL---AWSSSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKS-- 292 (415)
Q Consensus 219 ~g~~la~g~~dg~V~iwd~~~~~~-~~~l~~h~~~V~~l---~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~-- 292 (415)
...+||.|+..|...+|...+.+. ......|...|+-+ +-+.-.+..++.|.++++.++..+.. ....|..
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~---~~~~h~~~~ 159 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSN---KFAVHNQNL 159 (344)
T ss_pred cccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcc---cceeecccc
Confidence 456899999999999999986542 33333343333222 22234577788999999988876542 1222333
Q ss_pred CeEEEEEeCCCCEEEEEeCCCcEEEEECCCCc-eeEE--eccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCc
Q 014934 293 EVCGLKWSYDNRELASGGNDNRLFVWNQHSTQ-PVLK--YCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNT 369 (415)
Q Consensus 293 ~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~-~~~~--~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~ 369 (415)
.+.++.+++|++++++.+....|..|.+.... .+.. .......-.+..|+.... .+|++. .||++.|||++...
T Consensus 160 ~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~-~FAv~~--Qdg~~~I~DVR~~~ 236 (344)
T KOG4532|consen 160 TQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDL-QFAVVF--QDGTCAIYDVRNMA 236 (344)
T ss_pred ceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcc-eEEEEe--cCCcEEEEEecccc
Confidence 38899999999999999999999999987542 2222 223344556788888765 777776 89999999998754
Q ss_pred EEE-Ee-----eCCCCEEEEEECCCCC--eEEEEEecCCCcEEEEECCCCc
Q 014934 370 HLS-CM-----DTGSQVCNLVWSKNVN--ELVSTHGYSQNQIIVWRYPTMS 412 (415)
Q Consensus 370 ~~~-~~-----~~~~~V~~l~~s~~~~--~l~s~~g~~dg~I~vw~~~s~~ 412 (415)
... .+ .+.+.+..+.|++.|. .|+.+ -.-+.+.|-|+.++.
T Consensus 237 tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~s--Ehfs~~hv~D~R~~~ 285 (344)
T KOG4532|consen 237 TPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFIS--EHFSRVHVVDTRNYV 285 (344)
T ss_pred cchhhhcccCCCCCCceEEEEecCCCcceEEEEe--cCcceEEEEEcccCc
Confidence 322 22 2667899999998653 33332 234578888887764
No 295
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.73 E-value=2.7e-08 Score=96.35 Aligned_cols=172 Identities=15% Similarity=0.224 Sum_probs=123.2
Q ss_pred EEeEec-CCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCC-------CeeeEEecCCCccEEEEEeeCCEEEEEeCCCc
Q 014934 200 TKLCDL-GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASR-------CKRVRTMEGHRLRVGALAWSSSLLSSGSRDKS 271 (415)
Q Consensus 200 ~~~~~~-~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~-------~~~~~~l~~h~~~V~~l~~~~~~l~sgs~dg~ 271 (415)
++++.+ +|...|..++--.+.+-+++++.|.+|++|.++. ..+.-++..|..+|.++.|-.+.-..++.||.
T Consensus 726 irL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~ScD~g 805 (1034)
T KOG4190|consen 726 IRLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASCDGG 805 (1034)
T ss_pred eeeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeeccCc
Confidence 334433 8888888888777788899999999999999853 23666788999999999997555455667999
Q ss_pred EEEEECCCCCccEEEec----cccCCeEEEEEeCCCCEEEE-EeCCCcEEEEECCCCceeEEec-----cCCCcEEEEEE
Q 014934 272 ILQRDIRAQEDFVSKLS----GHKSEVCGLKWSYDNRELAS-GGNDNRLFVWNQHSTQPVLKYC-----EHTAAVKAIAW 341 (415)
Q Consensus 272 I~iwd~~~~~~~~~~~~----~h~~~V~~l~~spdg~~las-g~~dg~I~iwd~~~~~~~~~~~-----~h~~~V~~l~~ 341 (415)
|.+||.--+....+... +-.+.|.++. +-+..+++. ++...+|+++|.+.+.....++ +.++-+.+++.
T Consensus 806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~-nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaV 884 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLE-NVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAV 884 (1034)
T ss_pred ceeecccccchhHhhhcCcccCCCceeEecc-cCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEe
Confidence 99999765542211111 1122333332 113444444 4678899999999887665554 34567899999
Q ss_pred cCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee
Q 014934 342 SPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD 375 (415)
Q Consensus 342 sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~ 375 (415)
.+.|+++.+.- ..|+|.+.|.++|+.+....
T Consensus 885 a~~GN~lAa~L---SnGci~~LDaR~G~vINswr 915 (1034)
T KOG4190|consen 885 ADKGNKLAAAL---SNGCIAILDARNGKVINSWR 915 (1034)
T ss_pred ccCcchhhHHh---cCCcEEEEecCCCceeccCC
Confidence 99998766644 58999999999999887654
No 296
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.73 E-value=3.1e-08 Score=91.04 Aligned_cols=165 Identities=19% Similarity=0.226 Sum_probs=124.6
Q ss_pred ecCC---CcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCC-----eeeEE
Q 014934 174 DWSS---HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRC-----KRVRT 245 (415)
Q Consensus 174 ~ws~---~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~-----~~~~~ 245 (415)
+|+- +.-+++|.+..|-+-|.++|....+. ..+.|.++.|...++++..|+.+|.|..+|++.. .+...
T Consensus 218 awSlni~gyhfs~G~sqqv~L~nvetg~~qsf~---sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~r 294 (425)
T KOG2695|consen 218 AWSLNIMGYHFSVGLSQQVLLTNVETGHQQSFQ---SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQR 294 (425)
T ss_pred hhhhccceeeecccccceeEEEEeecccccccc---cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEE
Confidence 5664 23367788889999999998654333 4678999999999999999999999999999754 34444
Q ss_pred ecCCCccEEEEE---eeCCEEEEEeCCCcEEEEECCCCCc--cEEEeccccCCeEEE--EEeCCCCEEEEEeCCCcEEEE
Q 014934 246 MEGHRLRVGALA---WSSSLLSSGSRDKSILQRDIRAQED--FVSKLSGHKSEVCGL--KWSYDNRELASGGNDNRLFVW 318 (415)
Q Consensus 246 l~~h~~~V~~l~---~~~~~l~sgs~dg~I~iwd~~~~~~--~~~~~~~h~~~V~~l--~~spdg~~lasg~~dg~I~iw 318 (415)
+. |...|+++. |+..+|.+.+.+|+|.+||+|.-+. -+..+.+|-..-.-+ -..+....++++|.|-..+||
T Consensus 295 ly-h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiW 373 (425)
T KOG2695|consen 295 LY-HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIW 373 (425)
T ss_pred EE-cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEE
Confidence 44 888888875 4578999999999999999997552 267788885543333 345677788899999999999
Q ss_pred ECCCCceeEEeccCCC----cEEEEEEc
Q 014934 319 NQHSTQPVLKYCEHTA----AVKAIAWS 342 (415)
Q Consensus 319 d~~~~~~~~~~~~h~~----~V~~l~~s 342 (415)
.++.+..+.++.-... .+..++|.
T Consensus 374 sl~~ghLl~tipf~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 374 SLDSGHLLCTIPFPYSASEVDIPSVAFD 401 (425)
T ss_pred ecccCceeeccCCCCccccccccceehh
Confidence 9999998887753322 34455554
No 297
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.68 E-value=1.8e-07 Score=83.04 Aligned_cols=143 Identities=15% Similarity=0.127 Sum_probs=91.8
Q ss_pred cEEEEEcCCeEEEEECCCCC-eEEeEecCCCCCeEEEEEcCCCCeEEEEE-----CCCcEEEEECCCCeeeEEecCCCcc
Q 014934 179 NVLAVGLGNCVYLWNACSSK-VTKLCDLGIDDSVCSVGWANRNTHLAVGT-----SHGKVQIWDASRCKRVRTMEGHRLR 252 (415)
Q Consensus 179 ~~la~~~d~~V~iwd~~~~~-~~~~~~~~~~~~V~~v~~sp~g~~la~g~-----~dg~V~iwd~~~~~~~~~l~~h~~~ 252 (415)
.+...+.|+.+.+.+.+.-. +.......|. .-.+.+....++.+.++. .-+..++|+++..+....-......
T Consensus 103 ~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~-~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~ 181 (319)
T KOG4714|consen 103 RVCIGYADGSLAVFSTDKDLALMSRIPSIHS-GSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDA 181 (319)
T ss_pred ceEecCCCceEEEEechHHHhhhhhcccccc-cccccceeecccEEecCCcceEeeccceeeeccccccccccccccccc
Confidence 33344468888888865411 1111111111 112222333444444432 2234555665433222111112234
Q ss_pred EEEEEeeC---CEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeC-CCCEEEEEeCCCcEEEEECCC
Q 014934 253 VGALAWSS---SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSY-DNRELASGGNDNRLFVWNQHS 322 (415)
Q Consensus 253 V~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~lasg~~dg~I~iwd~~~ 322 (415)
|.+++-+| +++++|+.||.+-+||.|....+...+..|+.+|..+-|+| ++..|+++++||.+..||..+
T Consensus 182 v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 182 VTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred chhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 88888874 78999999999999999998877888899999999999998 778999999999999999865
No 298
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.67 E-value=3.7e-06 Score=90.96 Aligned_cols=232 Identities=14% Similarity=0.217 Sum_probs=140.1
Q ss_pred ceeEeecCC--CcEEEEEcCCeEEEE----ECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCee
Q 014934 169 YLNLVDWSS--HNVLAVGLGNCVYLW----NACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKR 242 (415)
Q Consensus 169 ~i~~l~ws~--~~~la~~~d~~V~iw----d~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~ 242 (415)
.|..+.+-+ ..++++..+|.|.+. +..+..+..+-. -...|.+++||||+..||..+.+|+|.+.. .+...
T Consensus 77 ~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~--vd~GI~a~~WSPD~Ella~vT~~~~l~~mt-~~fd~ 153 (928)
T PF04762_consen 77 KIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGS--VDSGILAASWSPDEELLALVTGEGNLLLMT-RDFDP 153 (928)
T ss_pred cEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEE--EcCcEEEEEECCCcCEEEEEeCCCEEEEEe-ccceE
Confidence 466666666 345555568888888 655555443332 257999999999999999999999998875 45555
Q ss_pred eEEecCCCc-----cEEEEEee-CCEEEEEeCCCcEE--EEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeC---
Q 014934 243 VRTMEGHRL-----RVGALAWS-SSLLSSGSRDKSIL--QRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGN--- 311 (415)
Q Consensus 243 ~~~l~~h~~-----~V~~l~~~-~~~l~sgs~dg~I~--iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~--- 311 (415)
+....-+.. .--.+-|- ...=+=|+.-+... .-|....+.-...+. +...-..|+|-.||.+||+.+-
T Consensus 154 i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~ 232 (928)
T PF04762_consen 154 ISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPE 232 (928)
T ss_pred EEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEEcC
Confidence 555443321 22234443 11111121111100 111111100011222 4445667999999999998764
Q ss_pred C---CcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCC-CCCeEEEEECCCCcEEEEee-----CCCCEEE
Q 014934 312 D---NRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGT-ADRCIRFWNTTTNTHLSCMD-----TGSQVCN 382 (415)
Q Consensus 312 d---g~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~-~d~~I~iwd~~t~~~~~~~~-----~~~~V~~ 382 (415)
. ..|+||+-+ |.....-+.-.+--.+++|.|.|. ++|+.... ....|.+|. ++|..-..+. ....|..
T Consensus 233 ~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~-lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~ 309 (928)
T PF04762_consen 233 TGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGN-LIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIE 309 (928)
T ss_pred CCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCC-EEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCceeeE
Confidence 3 479999965 654444433333345789999997 77766421 234566666 4454444443 2457999
Q ss_pred EEECCCCCeEEEEEecCCCcEEEEECCC
Q 014934 383 LVWSKNVNELVSTHGYSQNQIIVWRYPT 410 (415)
Q Consensus 383 l~~s~~~~~l~s~~g~~dg~I~vw~~~s 410 (415)
+.|++++..|+.. ..| .|.+|-..+
T Consensus 310 l~Wn~ds~iLAv~--~~~-~vqLWt~~N 334 (928)
T PF04762_consen 310 LAWNSDSEILAVW--LED-RVQLWTRSN 334 (928)
T ss_pred EEECCCCCEEEEE--ecC-CceEEEeeC
Confidence 9999999999984 344 599997654
No 299
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.61 E-value=7.7e-06 Score=79.83 Aligned_cols=234 Identities=15% Similarity=0.214 Sum_probs=155.8
Q ss_pred EeecCC-CcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECC-----CcEEEEECCCCeeeEE
Q 014934 172 LVDWSS-HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSH-----GKVQIWDASRCKRVRT 245 (415)
Q Consensus 172 ~l~ws~-~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~d-----g~V~iwd~~~~~~~~~ 245 (415)
.+.||- +.++|.-..++|.||+..+-.+...-.+ .-..|....|+|.++.||.=+-. ..+.|-.+.+.+.+++
T Consensus 310 ~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Ksl-ki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt 388 (698)
T KOG2314|consen 310 IFRWSHDDKYFARMTGNSISIYETPSFMLLDKKSL-KISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRT 388 (698)
T ss_pred eEEeccCCceeEEeccceEEEEecCceeeeccccc-CCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeee
Confidence 568998 7888888889999998765322222211 24678999999999988874321 3477777877777777
Q ss_pred ecCCCccEEEEEee--CCEEEEE----------eCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeC--
Q 014934 246 MEGHRLRVGALAWS--SSLLSSG----------SRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGN-- 311 (415)
Q Consensus 246 l~~h~~~V~~l~~~--~~~l~sg----------s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~-- 311 (415)
..-|.-.=..|.|. +++|+.- +.-..+-|+.++...-++..+. -+..|-..+|-|.|+.+++-+.
T Consensus 389 ~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~ve-lke~vi~FaWEP~gdkF~vi~g~~ 467 (698)
T KOG2314|consen 389 KNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVE-LKESVIAFAWEPHGDKFAVISGNT 467 (698)
T ss_pred ccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeee-cchheeeeeeccCCCeEEEEEccc
Confidence 66555444455664 5666543 1122356677776664444433 4567889999999999887443
Q ss_pred -CCcEEEEECCC-C---ceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEE-eeCCCCEEEEEE
Q 014934 312 -DNRLFVWNQHS-T---QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSC-MDTGSQVCNLVW 385 (415)
Q Consensus 312 -dg~I~iwd~~~-~---~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~-~~~~~~V~~l~~ 385 (415)
..++.+|-+++ . +.+..+. ....+.+.|+|.|+.+++.+-++..|.+.++|+.-..+... ...+...+.+.|
T Consensus 468 ~k~tvsfY~~e~~~~~~~lVk~~d--k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veW 545 (698)
T KOG2314|consen 468 VKNTVSFYAVETNIKKPSLVKELD--KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEW 545 (698)
T ss_pred cccceeEEEeecCCCchhhhhhhc--ccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccccccccceE
Confidence 34688888763 2 2334442 24568899999999777766555789999999985322211 123455788999
Q ss_pred CCCCCeEEEEEec----CCCcEEEEECC
Q 014934 386 SKNVNELVSTHGY----SQNQIIVWRYP 409 (415)
Q Consensus 386 s~~~~~l~s~~g~----~dg~I~vw~~~ 409 (415)
.|.|+++++++.. .|+--+||++.
T Consensus 546 DPtGRYvvT~ss~wrhk~d~GYri~tfq 573 (698)
T KOG2314|consen 546 DPTGRYVVTSSSSWRHKVDNGYRIFTFQ 573 (698)
T ss_pred CCCCCEEEEeeehhhhccccceEEEEee
Confidence 9999999985322 25566777765
No 300
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.60 E-value=3.1e-08 Score=100.66 Aligned_cols=207 Identities=15% Similarity=0.245 Sum_probs=148.0
Q ss_pred cceeEeecCC-CcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCC--cEEEEECCC-Cee
Q 014934 168 FYLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHG--KVQIWDASR-CKR 242 (415)
Q Consensus 168 ~~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg--~V~iwd~~~-~~~ 242 (415)
...+|++|+. .+.|++| ..|.|+++++.+|....... .|...|+.|.-+.+|..+++.+... ...+|++.. +..
T Consensus 1102 ~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~n-cH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~ 1180 (1516)
T KOG1832|consen 1102 ALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVN-CHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGP 1180 (1516)
T ss_pred cceeeEEeecCCceEEeeeccceEEEEEccCcccccccc-ccccccccccccCCcceeeeeccccCchHHHhccccccCc
Confidence 3578999998 7888888 47999999999998877765 8899999999999998777665433 478999854 445
Q ss_pred eEEecCCCccEEEEEeeC--CEEEEEeCCCcEEEEECCCCCccEEEec---cccCCeEEEEEeCCCCEEEEEeCCCcEEE
Q 014934 243 VRTMEGHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQEDFVSKLS---GHKSEVCGLKWSYDNRELASGGNDNRLFV 317 (415)
Q Consensus 243 ~~~l~~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~---~h~~~V~~l~~spdg~~lasg~~dg~I~i 317 (415)
.+++.+ -.++.|+. ..-+.|..-....+||+.+...+...+. +....-++..|+|+..+++ +|| .+
T Consensus 1181 ~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl---ndG--vL 1251 (1516)
T KOG1832|consen 1181 RHSFDE----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL---NDG--VL 1251 (1516)
T ss_pred cccccc----cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe---eCc--ee
Confidence 555543 45677773 2233444445688999998874433232 2233346788999988775 466 47
Q ss_pred EECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEE
Q 014934 318 WNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVS 394 (415)
Q Consensus 318 wd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s 394 (415)
||.+..+.+++|...+..+ .-.|+|+|..+++-. .|||++|-+.++.+..-.+ |.+.|+..|..+.+
T Consensus 1252 WDvR~~~aIh~FD~ft~~~-~G~FHP~g~eVIINS--------EIwD~RTF~lLh~VP~Ldq-c~VtFNstG~VmYa 1318 (1516)
T KOG1832|consen 1252 WDVRIPEAIHRFDQFTDYG-GGGFHPSGNEVIINS--------EIWDMRTFKLLHSVPSLDQ-CAVTFNSTGDVMYA 1318 (1516)
T ss_pred eeeccHHHHhhhhhheecc-cccccCCCceEEeec--------hhhhhHHHHHHhcCccccc-eEEEeccCccchhh
Confidence 9999998888886555222 346999998666632 4999999988877653333 66888888876654
No 301
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.60 E-value=7.3e-07 Score=89.07 Aligned_cols=196 Identities=15% Similarity=0.243 Sum_probs=138.2
Q ss_pred CCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCC---------------eeeEEecCCCccEEEEEee--CCEEEEEeC
Q 014934 206 GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRC---------------KRVRTMEGHRLRVGALAWS--SSLLSSGSR 268 (415)
Q Consensus 206 ~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~---------------~~~~~l~~h~~~V~~l~~~--~~~l~sgs~ 268 (415)
.......|++|+....++|+|+.||.+++..+.+. ..-.++.||.+.|..+.|+ ...|.+...
T Consensus 12 PnnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt 91 (1189)
T KOG2041|consen 12 PNNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDT 91 (1189)
T ss_pred CCCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCC
Confidence 45667899999999999999999999999987542 1224567999999999999 478999999
Q ss_pred CCcEEEEECCCCCccEE-EeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCc
Q 014934 269 DKSILQRDIRAQEDFVS-KLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHG 347 (415)
Q Consensus 269 dg~I~iwd~~~~~~~~~-~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ 347 (415)
+|.|.+|-+-.+.-+.. .-...++.|.+++|+.||..++..-.||.|.|=.+...+ +.--+-...-...+.|++|.+.
T Consensus 92 ~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNR-IwgKeLkg~~l~hv~ws~D~~~ 170 (1189)
T KOG2041|consen 92 SGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNR-IWGKELKGQLLAHVLWSEDLEQ 170 (1189)
T ss_pred CceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccce-ecchhcchheccceeecccHHH
Confidence 99999999877652211 112345679999999999999999999998887765432 2211111122347899999886
Q ss_pred EEEEEcCCCCCeEEEEECCCCc-------EEEEee-----CCCCEEEEEEC--------CCCCeEEEEEecCCCcEEEEE
Q 014934 348 LLASGGGTADRCIRFWNTTTNT-------HLSCMD-----TGSQVCNLVWS--------KNVNELVSTHGYSQNQIIVWR 407 (415)
Q Consensus 348 llasggg~~d~~I~iwd~~t~~-------~~~~~~-----~~~~V~~l~~s--------~~~~~l~s~~g~~dg~I~vw~ 407 (415)
+|+.- ..|.+.++|....- +..... .+..|..+.|. |+...|++ .+.+|.+.|..
T Consensus 171 ~Lf~~---ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lav--cy~nGr~QiMR 245 (1189)
T KOG2041|consen 171 ALFKK---ANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAV--CYANGRMQIMR 245 (1189)
T ss_pred HHhhh---cCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEE--EEcCceehhhh
Confidence 66633 68999999976421 111111 12335566664 46667777 56777766654
No 302
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.59 E-value=2.6e-06 Score=86.44 Aligned_cols=178 Identities=15% Similarity=0.193 Sum_probs=127.1
Q ss_pred ceeEeecCCCcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEec
Q 014934 169 YLNLVDWSSHNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTME 247 (415)
Q Consensus 169 ~i~~l~ws~~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~ 247 (415)
.+.|.+++ +.+++.| ..|.|++.+....- ...+ .|... ..+|.++++|+.||+|.|-.+.+.+....+.
T Consensus 41 ~is~~av~-~~~~~~GtH~g~v~~~~~~~~~-~~~~--~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d 110 (846)
T KOG2066|consen 41 AISCCAVH-DKFFALGTHRGAVYLTTCQGNP-KTNF--DHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYD 110 (846)
T ss_pred HHHHHHhh-cceeeeccccceEEEEecCCcc-cccc--ccccc------ccCCceEEEecCCCcEEEeeccCCccceeEe
Confidence 35566665 4566666 57899999875543 2222 34333 6689999999999999999998887776665
Q ss_pred CCCccEEEEEeeC-------CEEEEEeCCCcEEEEECCCCCcc-EEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEE
Q 014934 248 GHRLRVGALAWSS-------SLLSSGSRDKSILQRDIRAQEDF-VSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWN 319 (415)
Q Consensus 248 ~h~~~V~~l~~~~-------~~l~sgs~dg~I~iwd~~~~~~~-~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd 319 (415)
...++.+++++| +.+++|+.-| +.++.-+-.... ...+....++|.+++|. |+++|-++.+| |+|||
T Consensus 111 -f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd 185 (846)
T KOG2066|consen 111 -FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYD 185 (846)
T ss_pred -cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cEEEe
Confidence 456788999886 4799999999 777654322211 12355667899999996 88999998888 99999
Q ss_pred CCCCceeEEeccCCCcE------EEEEEcCCCCcEEEEEcCCCCCeEEEEECC
Q 014934 320 QHSTQPVLKYCEHTAAV------KAIAWSPHLHGLLASGGGTADRCIRFWNTT 366 (415)
Q Consensus 320 ~~~~~~~~~~~~h~~~V------~~l~~sp~~~~llasggg~~d~~I~iwd~~ 366 (415)
+.+++.+..+......+ ..+.|.+..+ | +.| ...+|+|..++
T Consensus 186 ~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-L-VIG---W~d~v~i~~I~ 233 (846)
T KOG2066|consen 186 TPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR-L-VIG---WGDSVKICSIK 233 (846)
T ss_pred ccccceeeccCCCCCCCCcccCCCceEecCCCe-E-EEe---cCCeEEEEEEe
Confidence 99988877765433333 4578887753 4 444 45678888877
No 303
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=1.2e-06 Score=82.23 Aligned_cols=217 Identities=16% Similarity=0.139 Sum_probs=139.3
Q ss_pred EEEEECCCCCeEEeEecCCCCCeEEEEEcCCCC-eEEEEECCCcEEEEECCCCeeeEEecCCCccEEEEEee---CCEEE
Q 014934 189 VYLWNACSSKVTKLCDLGIDDSVCSVGWANRNT-HLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWS---SSLLS 264 (415)
Q Consensus 189 V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~-~la~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~---~~~l~ 264 (415)
|++.+..+-+...++ ..+...|.+++|+|... ++..++.+..|.|.|+++...+..+..+ ..+++++|+ .+++.
T Consensus 175 v~~l~~~~fkssq~l-p~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IY 252 (463)
T KOG1645|consen 175 VQKLESHDFKSSQIL-PGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIY 252 (463)
T ss_pred eEEeccCCcchhhcc-cccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeE
Confidence 666666555544433 26778899999999776 7888899999999999999999888877 789999998 47999
Q ss_pred EEeCCCcEEEEECCCCCccEEEecc--ccCCeEEEEE------eCCCCEEEEEeCCCcEEEEECCC--C--ceeEEeccC
Q 014934 265 SGSRDKSILQRDIRAQEDFVSKLSG--HKSEVCGLKW------SYDNRELASGGNDNRLFVWNQHS--T--QPVLKYCEH 332 (415)
Q Consensus 265 sgs~dg~I~iwd~~~~~~~~~~~~~--h~~~V~~l~~------spdg~~lasg~~dg~I~iwd~~~--~--~~~~~~~~h 332 (415)
.|...|.|++||+|..+..+..+.+ ...+|..++. .+.|.+|+....+ +..|++.- + -++..+ +.
T Consensus 253 aGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlel-e~ 329 (463)
T KOG1645|consen 253 AGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLEL-EP 329 (463)
T ss_pred EeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCccccc-CC
Confidence 9999999999999988755444433 1234544433 3345555554443 45566432 2 222333 33
Q ss_pred CCcEEEEEEcCCCCcEEEEEcCCCC---CeEEE----EECCCCcEEEEee---CCCCE-----EEEEE-CCCCCeEEEEE
Q 014934 333 TAAVKAIAWSPHLHGLLASGGGTAD---RCIRF----WNTTTNTHLSCMD---TGSQV-----CNLVW-SKNVNELVSTH 396 (415)
Q Consensus 333 ~~~V~~l~~sp~~~~llasggg~~d---~~I~i----wd~~t~~~~~~~~---~~~~V-----~~l~~-s~~~~~l~s~~ 396 (415)
.+...++..++..+.+|++.- .+ -.+++ -|-.+|..+.... .++.- ....+ .++.++++. .
T Consensus 330 pG~cismqy~~~snh~l~tyR--s~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~-~ 406 (463)
T KOG1645|consen 330 PGICISMQYHGVSNHLLLTYR--SNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVV-V 406 (463)
T ss_pred CcceeeeeecCccceEEEEec--CCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEE-e
Confidence 556777788887777888762 11 11111 2333444443322 12221 12233 344455554 4
Q ss_pred ecCCCcEEEEECCCCcc
Q 014934 397 GYSQNQIIVWRYPTMSK 413 (415)
Q Consensus 397 g~~dg~I~vw~~~s~~~ 413 (415)
|.+-+.+.+||..+++.
T Consensus 407 gd~tn~lil~D~~s~ev 423 (463)
T KOG1645|consen 407 GDSTNELILQDPHSFEV 423 (463)
T ss_pred cCCcceeEEeccchhhe
Confidence 77889999999988754
No 304
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.57 E-value=1.8e-08 Score=99.35 Aligned_cols=199 Identities=21% Similarity=0.319 Sum_probs=137.7
Q ss_pred CCCCcceeEeecCC---CcEEEEE-cCCeEEEEECCCCCeE-EeEecCCCCCeEEEEEcC-CCCeEEEEEC----CCcEE
Q 014934 164 LQDDFYLNLVDWSS---HNVLAVG-LGNCVYLWNACSSKVT-KLCDLGIDDSVCSVGWAN-RNTHLAVGTS----HGKVQ 233 (415)
Q Consensus 164 l~~~~~i~~l~ws~---~~~la~~-~d~~V~iwd~~~~~~~-~~~~~~~~~~V~~v~~sp-~g~~la~g~~----dg~V~ 233 (415)
..+.-|+.|++|+- ..++++| .+|.|.+-......-. ..+..++...+++++|++ |.++||+|-. |..+.
T Consensus 53 ~sdtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~ 132 (783)
T KOG1008|consen 53 WSDTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLK 132 (783)
T ss_pred cccCCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcc
Confidence 34556888999886 2588888 4688888876554322 333346778999999998 6678888843 56799
Q ss_pred EEECCCC--eeeE--EecC-CCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeC-CCCE
Q 014934 234 IWDASRC--KRVR--TMEG-HRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSY-DNRE 305 (415)
Q Consensus 234 iwd~~~~--~~~~--~l~~-h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~ 305 (415)
|||+.+. .+.. .|.+ ......+++|. ..++.+|...+.+.++|+|.... ....-....+.++..+| .+++
T Consensus 133 Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~--~~~svnTk~vqG~tVdp~~~nY 210 (783)
T KOG1008|consen 133 IWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLD--SVSSVNTKYVQGITVDPFSPNY 210 (783)
T ss_pred ceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhh--hhhhhhhhhcccceecCCCCCc
Confidence 9999775 1111 1222 22345577886 46788888899999999995542 22222345677888888 7888
Q ss_pred EEEEeCCCcEEEEE-CCCC-ceeEEeccCC----CcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECC
Q 014934 306 LASGGNDNRLFVWN-QHST-QPVLKYCEHT----AAVKAIAWSPHLHGLLASGGGTADRCIRFWNTT 366 (415)
Q Consensus 306 lasg~~dg~I~iwd-~~~~-~~~~~~~~h~----~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~ 366 (415)
+++-. ||.|-+|| .++- .++..+.... ..+..++|+|....++++... ..++|+.+|+.
T Consensus 211 ~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~R-dS~tIrlydi~ 275 (783)
T KOG1008|consen 211 FCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSR-DSITIRLYDIC 275 (783)
T ss_pred eeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhcc-CcceEEEeccc
Confidence 87765 99999999 3332 3333332222 248999999999889888852 56889999985
No 305
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.56 E-value=6.3e-05 Score=68.59 Aligned_cols=185 Identities=15% Similarity=0.094 Sum_probs=119.3
Q ss_pred CcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEe-cCC-----Cc
Q 014934 178 HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTM-EGH-----RL 251 (415)
Q Consensus 178 ~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l-~~h-----~~ 251 (415)
+.+++...++.|+.||..+|+..-...+.. .+.... ...+..+++++.++.|..+|..+++.+-.. ... ..
T Consensus 37 ~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~--~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~ 113 (238)
T PF13360_consen 37 GRVYVASGDGNLYALDAKTGKVLWRFDLPG--PISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVR 113 (238)
T ss_dssp TEEEEEETTSEEEEEETTTSEEEEEEECSS--CGGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB
T ss_pred CEEEEEcCCCEEEEEECCCCCEEEEeeccc--ccccee-eecccccccccceeeeEecccCCcceeeeeccccccccccc
Confidence 455555688999999999999877776522 211111 235666777788899999999999887763 322 11
Q ss_pred cEEEEEeeCCEEEEEeCCCcEEEEECCCCCccEEEeccccCC----------eEEEEEeCCCCEEEEEeCCCcEEEEECC
Q 014934 252 RVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSE----------VCGLKWSYDNRELASGGNDNRLFVWNQH 321 (415)
Q Consensus 252 ~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~----------V~~l~~spdg~~lasg~~dg~I~iwd~~ 321 (415)
......+.++.++.+..++.|..+|++++.. +-........ +.+-....++ .+..++.++.+.-+|+.
T Consensus 114 ~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~-~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~ 191 (238)
T PF13360_consen 114 SSSSPAVDGDRLYVGTSSGKLVALDPKTGKL-LWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLA 191 (238)
T ss_dssp --SEEEEETTEEEEEETCSEEEEEETTTTEE-EEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETT
T ss_pred cccCceEecCEEEEEeccCcEEEEecCCCcE-EEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECC
Confidence 2334455588999999999999999999874 3333332211 1222222344 67777777754444999
Q ss_pred CCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEE
Q 014934 322 STQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSC 373 (415)
Q Consensus 322 ~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~ 373 (415)
+++.+.+.. ...+..+ ....+..+++.. .++.|..||+.+|+.+..
T Consensus 192 tg~~~w~~~--~~~~~~~-~~~~~~~l~~~~---~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 192 TGEKLWSKP--ISGIYSL-PSVDGGTLYVTS---SDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp TTEEEEEEC--SS-ECEC-EECCCTEEEEEE---TTTEEEEEETTTTEEEEE
T ss_pred CCCEEEEec--CCCccCC-ceeeCCEEEEEe---CCCEEEEEECCCCCEEeE
Confidence 998765443 3333332 335555455544 689999999999987653
No 306
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.54 E-value=2.9e-07 Score=58.69 Aligned_cols=37 Identities=38% Similarity=0.713 Sum_probs=35.3
Q ss_pred cEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEE
Q 014934 283 FVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWN 319 (415)
Q Consensus 283 ~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd 319 (415)
++..+.+|...|.+|+|+|++.+|++|+.|+.|++||
T Consensus 3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 5778999999999999999999999999999999998
No 307
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.54 E-value=4.1e-05 Score=70.55 Aligned_cols=181 Identities=17% Similarity=0.112 Sum_probs=123.8
Q ss_pred eeEeecC-CCcEEEEEcCCeEEEEECCCCCeEEeEecC----CCCCeEEEEEcCCCCeEEEEECC--------CcEEEEE
Q 014934 170 LNLVDWS-SHNVLAVGLGNCVYLWNACSSKVTKLCDLG----IDDSVCSVGWANRNTHLAVGTSH--------GKVQIWD 236 (415)
Q Consensus 170 i~~l~ws-~~~~la~~~d~~V~iwd~~~~~~~~~~~~~----~~~~V~~v~~sp~g~~la~g~~d--------g~V~iwd 236 (415)
.+.+.+. +++.|.++..+.+.++|..+++...+.... .....+.+++.++|++.++.... |.|..++
T Consensus 42 ~~G~~~~~~~g~l~v~~~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~ 121 (246)
T PF08450_consen 42 PNGMAFDRPDGRLYVADSGGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRID 121 (246)
T ss_dssp EEEEEEECTTSEEEEEETTCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEE
T ss_pred CceEEEEccCCEEEEEEcCceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEEC
Confidence 4455555 555566665666777799999887777651 34568899999999977665543 5577777
Q ss_pred CCCCeeeEEecCCCccEEEEEeeC--CEE-EEEeCCCcEEEEECCCCCc-c--EEEe---ccccCCeEEEEEeCCCCEEE
Q 014934 237 ASRCKRVRTMEGHRLRVGALAWSS--SLL-SSGSRDKSILQRDIRAQED-F--VSKL---SGHKSEVCGLKWSYDNRELA 307 (415)
Q Consensus 237 ~~~~~~~~~l~~h~~~V~~l~~~~--~~l-~sgs~dg~I~iwd~~~~~~-~--~~~~---~~h~~~V~~l~~spdg~~la 307 (415)
.. ++...... .-...+.|+|++ +.| ++-+..+.|..+++..... . ...+ ....+...++++..+|++.+
T Consensus 122 ~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~v 199 (246)
T PF08450_consen 122 PD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWV 199 (246)
T ss_dssp TT-SEEEEEEE-EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEE
T ss_pred CC-CeEEEEec-CcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEE
Confidence 77 45433333 345678999993 455 4667888899999875432 1 1112 22223478999999999988
Q ss_pred EEeCCCcEEEEECCCCceeEEeccCCCcEEEEEE-cCCCCcEEEEEc
Q 014934 308 SGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAW-SPHLHGLLASGG 353 (415)
Q Consensus 308 sg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~-sp~~~~llasgg 353 (415)
+....+.|.++|.. ++.+..+......+++++| -++.+.|+++.+
T Consensus 200 a~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 200 ADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp EEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTTSSEEEEEEB
T ss_pred EEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCCCCEEEEEeC
Confidence 88889999999987 8888877766668999999 467677887753
No 308
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.53 E-value=2.2e-05 Score=77.66 Aligned_cols=217 Identities=12% Similarity=0.088 Sum_probs=130.9
Q ss_pred cEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcC--CCCeEEEEECCCcEEEEECCCCeeeEEecCCC----c-
Q 014934 179 NVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWAN--RNTHLAVGTSHGKVQIWDASRCKRVRTMEGHR----L- 251 (415)
Q Consensus 179 ~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp--~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~----~- 251 (415)
.+++...++.|+-+|..+|+..-..............-+| .+..+++++.+|.+..+|..+++.+-...... .
T Consensus 162 ~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~ 241 (394)
T PRK11138 162 LVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATE 241 (394)
T ss_pred EEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccc
Confidence 3444446789999999999987665432110000000112 23457778889999999999887654432110 0
Q ss_pred --cE----EEEEeeCCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCce
Q 014934 252 --RV----GALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQP 325 (415)
Q Consensus 252 --~V----~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~ 325 (415)
.. ......++.++.++.+|.+..+|..+++..-..-.+ ....+. ..+..|..++.+|.|..+|..+++.
T Consensus 242 ~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~---~~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~ 316 (394)
T PRK11138 242 IDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYG---SVNDFA--VDGGRIYLVDQNDRVYALDTRGGVE 316 (394)
T ss_pred hhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCC---CccCcE--EECCEEEEEcCCCeEEEEECCCCcE
Confidence 00 111223677888889999999999988732222111 111222 2466778888999999999999987
Q ss_pred eEEeccCCC-cEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCC-CCEEE-EEECCCCCeEEEEEecCCCc
Q 014934 326 VLKYCEHTA-AVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTG-SQVCN-LVWSKNVNELVSTHGYSQNQ 402 (415)
Q Consensus 326 ~~~~~~h~~-~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~-~~V~~-l~~s~~~~~l~s~~g~~dg~ 402 (415)
+.+...-.. ...+.... +..+++ ++ .+|.|.+.|..+|+.+...+.. ..+.+ ..+ .+..|++ ++.+|.
T Consensus 317 ~W~~~~~~~~~~~sp~v~--~g~l~v-~~--~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v--~t~~G~ 387 (394)
T PRK11138 317 LWSQSDLLHRLLTAPVLY--NGYLVV-GD--SEGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLI--QARDGT 387 (394)
T ss_pred EEcccccCCCcccCCEEE--CCEEEE-Ee--CCCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEE--EeCCce
Confidence 765432111 12222222 333554 33 6999999999999998877643 33332 222 2345666 568999
Q ss_pred EEEEECC
Q 014934 403 IIVWRYP 409 (415)
Q Consensus 403 I~vw~~~ 409 (415)
|+.++.+
T Consensus 388 l~~~~~~ 394 (394)
T PRK11138 388 VYAITRP 394 (394)
T ss_pred EEEEeCC
Confidence 9988764
No 309
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.53 E-value=1.8e-05 Score=78.24 Aligned_cols=225 Identities=10% Similarity=0.003 Sum_probs=133.4
Q ss_pred CcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEE------EEEcC--CCCeEEEEECCCcEEEEECCCCeeeEEecCC
Q 014934 178 HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCS------VGWAN--RNTHLAVGTSHGKVQIWDASRCKRVRTMEGH 249 (415)
Q Consensus 178 ~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~------v~~sp--~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h 249 (415)
+.+++.+.++.|+-+|..+|+..-...+.....+.. +.-.| ++..+++++.+|.+.-+|.++++.+-.....
T Consensus 70 ~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~ 149 (394)
T PRK11138 70 NKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKVA 149 (394)
T ss_pred CEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccccCC
Confidence 445555567899999999998766655432111100 00011 4567788889999999999999877665533
Q ss_pred CccEEEEEeeCCEEEEEeCCCcEEEEECCCCCccEEEeccccCCe-----EEEEEeCCCCEEEEEeCCCcEEEEECCCCc
Q 014934 250 RLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEV-----CGLKWSYDNRELASGGNDNRLFVWNQHSTQ 324 (415)
Q Consensus 250 ~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V-----~~l~~spdg~~lasg~~dg~I~iwd~~~~~ 324 (415)
..........+..++.+..++.+..+|..+++. +-........+ .+... .+..++.++.+|.+..+|..+++
T Consensus 150 ~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~-~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~~~~g~v~a~d~~~G~ 226 (394)
T PRK11138 150 GEALSRPVVSDGLVLVHTSNGMLQALNESDGAV-KWTVNLDVPSLTLRGESAPAT--AFGGAIVGGDNGRVSAVLMEQGQ 226 (394)
T ss_pred CceecCCEEECCEEEEECCCCEEEEEEccCCCE-eeeecCCCCcccccCCCCCEE--ECCEEEEEcCCCEEEEEEccCCh
Confidence 222222233467788888999999999998873 32222111000 11111 23456777889999999999998
Q ss_pred eeEEeccCCC-------cEEEEEEcC--CCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEEE
Q 014934 325 PVLKYCEHTA-------AVKAIAWSP--HLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVST 395 (415)
Q Consensus 325 ~~~~~~~h~~-------~V~~l~~sp--~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~ 395 (415)
.+.+...... ....+.-+| .+..+++.+ .++.+..+|..+|+.+.....+... .+. ..+..++.
T Consensus 227 ~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~---~~g~l~ald~~tG~~~W~~~~~~~~-~~~--~~~~~vy~- 299 (394)
T PRK11138 227 LIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALA---YNGNLVALDLRSGQIVWKREYGSVN-DFA--VDGGRIYL- 299 (394)
T ss_pred hhheeccccCCCccchhcccccCCCcEEECCEEEEEE---cCCeEEEEECCCCCEEEeecCCCcc-CcE--EECCEEEE-
Confidence 7766532110 011111122 133455544 5899999999999987765533221 111 13444555
Q ss_pred EecCCCcEEEEECCCCcc
Q 014934 396 HGYSQNQIIVWRYPTMSK 413 (415)
Q Consensus 396 ~g~~dg~I~vw~~~s~~~ 413 (415)
+..+|.|..+|..+++.
T Consensus 300 -~~~~g~l~ald~~tG~~ 316 (394)
T PRK11138 300 -VDQNDRVYALDTRGGVE 316 (394)
T ss_pred -EcCCCeEEEEECCCCcE
Confidence 34677777777766543
No 310
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.53 E-value=6.4e-07 Score=79.63 Aligned_cols=147 Identities=14% Similarity=0.238 Sum_probs=97.4
Q ss_pred CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeC-----CCcEEEEECCCCceeEEeccCCC
Q 014934 260 SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGN-----DNRLFVWNQHSTQPVLKYCEHTA 334 (415)
Q Consensus 260 ~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~-----dg~I~iwd~~~~~~~~~~~~h~~ 334 (415)
++.++++..||.+.+.+.+.-....+.+..-...-.+.+....++.+.+++- -+..+.|+++..+.+..-.....
T Consensus 101 ~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~ 180 (319)
T KOG4714|consen 101 DNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALD 180 (319)
T ss_pred CCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccccccc
Confidence 5689999999999999987633222222221112222333345555555331 12356666654432222112234
Q ss_pred cEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEe--eCCCCEEEEEECCC-CCeEEEEEecCCCcEEEEECCC
Q 014934 335 AVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCM--DTGSQVCNLVWSKN-VNELVSTHGYSQNQIIVWRYPT 410 (415)
Q Consensus 335 ~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~--~~~~~V~~l~~s~~-~~~l~s~~g~~dg~I~vw~~~s 410 (415)
+|.+++-+|.+.+++++|+ .||.+-+||.+.......+ .|+..+..+.|+|. +..|++ .++||.+..||-.+
T Consensus 181 ~v~~l~~hp~qq~~v~cgt--~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft--~sedGslw~wdas~ 255 (319)
T KOG4714|consen 181 AVTALCSHPAQQHLVCCGT--DDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFT--CSEDGSLWHWDAST 255 (319)
T ss_pred cchhhhCCcccccEEEEec--CCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeE--ecCCCcEEEEcCCC
Confidence 5999999999999999987 8999999999987544333 27889999999985 566777 57999999999763
No 311
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.51 E-value=2.5e-06 Score=86.15 Aligned_cols=152 Identities=18% Similarity=0.279 Sum_probs=119.9
Q ss_pred CCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEecCCCccEEEEEeeC--------------CEEEEEeCCCcEEE
Q 014934 209 DSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWSS--------------SLLSSGSRDKSILQ 274 (415)
Q Consensus 209 ~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~~--------------~~l~sgs~dg~I~i 274 (415)
..-.++.|+|.| +||.|+.. .|.+.|..+-+.+..++.|...|+.+.|.+ -+|+++...|.|.+
T Consensus 16 sN~~A~Dw~~~G-LiAygshs-lV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil 93 (1062)
T KOG1912|consen 16 SNRNAADWSPSG-LIAYGSHS-LVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIIL 93 (1062)
T ss_pred ccccccccCccc-eEEEecCc-eEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEE
Confidence 446788999887 56766654 799999999999999999999999999972 15788888999999
Q ss_pred EECCCCCccEEEeccccCCeEEEEEeC---CC-CEEEEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEE
Q 014934 275 RDIRAQEDFVSKLSGHKSEVCGLKWSY---DN-RELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLA 350 (415)
Q Consensus 275 wd~~~~~~~~~~~~~h~~~V~~l~~sp---dg-~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~lla 350 (415)
||..... .+..+..|..++..++|-+ +. ..|+.-...+.|.+|+..+|+.+.++........++.+.|....-+.
T Consensus 94 ~d~~~~s-~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~ 172 (1062)
T KOG1912|consen 94 VDFVLAS-VINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFC 172 (1062)
T ss_pred EEehhhh-hhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEE
Confidence 9999886 4667778888999999875 44 46777777889999999999999988776677788999997654333
Q ss_pred EEcCCCCCeEEEEEC
Q 014934 351 SGGGTADRCIRFWNT 365 (415)
Q Consensus 351 sggg~~d~~I~iwd~ 365 (415)
.-| ..|.+.+-+.
T Consensus 173 ~l~--s~g~vl~~~~ 185 (1062)
T KOG1912|consen 173 VLG--SKGFVLSCKD 185 (1062)
T ss_pred EEc--cCceEEEEec
Confidence 332 4666666654
No 312
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=1.8e-06 Score=82.14 Aligned_cols=229 Identities=13% Similarity=0.064 Sum_probs=158.1
Q ss_pred CcEEEEEcCCeEEEEECCCCCeEEeEe--cCCCCCeEEEEEcCCCCeEEEEEC-CCcEEEEECCCCeeeEEecC--CCcc
Q 014934 178 HNVLAVGLGNCVYLWNACSSKVTKLCD--LGIDDSVCSVGWANRNTHLAVGTS-HGKVQIWDASRCKRVRTMEG--HRLR 252 (415)
Q Consensus 178 ~~~la~~~d~~V~iwd~~~~~~~~~~~--~~~~~~V~~v~~sp~g~~la~g~~-dg~V~iwd~~~~~~~~~l~~--h~~~ 252 (415)
.-++.++.||.++.|....-..+.... ..|-..|.+++.+.+|..+++++. |..++++|+++-..+..++. -.+.
T Consensus 21 ~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~ 100 (558)
T KOG0882|consen 21 KFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGF 100 (558)
T ss_pred heEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCc
Confidence 445666689999999765423333322 156778999999999999999777 99999999987665543331 2222
Q ss_pred EEEEEeeC----CEEEEEeCCCcEEEEECCCCCc-cEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCC-----
Q 014934 253 VGALAWSS----SLLSSGSRDKSILQRDIRAQED-FVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHS----- 322 (415)
Q Consensus 253 V~~l~~~~----~~l~sgs~dg~I~iwd~~~~~~-~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~----- 322 (415)
+..+--.+ .+.++.-.++.|.++|-+.... ....-.-|.++|..+.+++.+..+++....|.|.-|....
T Consensus 101 a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfP 180 (558)
T KOG0882|consen 101 AEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFP 180 (558)
T ss_pred eEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCc
Confidence 22221113 2333445678999999887653 3344456899999999999999999999999999999873
Q ss_pred -CceeE---------EeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeC----------------
Q 014934 323 -TQPVL---------KYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDT---------------- 376 (415)
Q Consensus 323 -~~~~~---------~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~---------------- 376 (415)
.+... .+........++.|+|++. -+++-+ .|..|+++++.+|+.++.++.
T Consensus 181 r~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~-qistl~--~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~ 257 (558)
T KOG0882|consen 181 RTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGA-QISTLN--PDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLM 257 (558)
T ss_pred cccccccccccchhhcccccccCccceEEccccC-cccccC--cccEEEEEEeccchhhhhhhccchhhhhccccccccc
Confidence 11111 1222345678899999998 455554 799999999999987665531
Q ss_pred -----------------C-CCEEEEEECCCCCeEEEEEecCCCcEEEEECCCCc
Q 014934 377 -----------------G-SQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMS 412 (415)
Q Consensus 377 -----------------~-~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~ 412 (415)
+ ..-+.+.|...|++|+. |.-- -|+|.++.+.+
T Consensus 258 ~VelgRRmaverelek~~~~~~~~~~fdes~~flly--~t~~-gikvin~~tn~ 308 (558)
T KOG0882|consen 258 HVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLY--GTIL-GIKVINLDTNT 308 (558)
T ss_pred eeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEe--ecce-eEEEEEeecCe
Confidence 1 12346889999999988 5433 47777776654
No 313
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.49 E-value=6.3e-06 Score=83.73 Aligned_cols=180 Identities=17% Similarity=0.312 Sum_probs=131.4
Q ss_pred CCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEecCCCccEEEEEeeCCEEEEEeCCCcEEEEECCCCCccEEEe
Q 014934 208 DDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKL 287 (415)
Q Consensus 208 ~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~ 287 (415)
.+.++|++++ +++|+.|+.+|.|.+++..-. . .+...|+.. .-.|.++++|+.||+|.|-.+-+... ...+
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~-~-~~~~~~s~~----~~~Gey~asCS~DGkv~I~sl~~~~~-~~~~ 109 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGN-P-KTNFDHSSS----ILEGEYVASCSDDGKVVIGSLFTDDE-ITQY 109 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCCc-c-ccccccccc----ccCCceEEEecCCCcEEEeeccCCcc-ceeE
Confidence 4566777665 779999999999999997643 2 344445544 33489999999999999998877763 2222
Q ss_pred ccccCCeEEEEEeCC-----CCEEEEEeCCCcEEEEECC---CCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCe
Q 014934 288 SGHKSEVCGLKWSYD-----NRELASGGNDNRLFVWNQH---STQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRC 359 (415)
Q Consensus 288 ~~h~~~V~~l~~spd-----g~~lasg~~dg~I~iwd~~---~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~ 359 (415)
....++.+++++|+ .+++++||.-| +.++.-+ ....+ .+..-.++|.++.|.-+ ++|=++ |--
T Consensus 110 -df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~~~eG~I~~i~W~g~---lIAWan---d~G 180 (846)
T KOG2066|consen 110 -DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLSEGEGPIHSIKWRGN---LIAWAN---DDG 180 (846)
T ss_pred -ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-eeecCccceEEEEecCc---EEEEec---CCC
Confidence 34578999999997 57899999988 7777632 22222 45566789999999843 777664 777
Q ss_pred EEEEECCCCcEEEEeeCC-------CCEEEEEECCCCCeEEEEEecCCCcEEEEECC
Q 014934 360 IRFWNTTTNTHLSCMDTG-------SQVCNLVWSKNVNELVSTHGYSQNQIIVWRYP 409 (415)
Q Consensus 360 I~iwd~~t~~~~~~~~~~-------~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~ 409 (415)
|+|||+.+++.+..+... ..-+.+.|.++.+.+ . |..| +|+|..+.
T Consensus 181 v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LV-I--GW~d-~v~i~~I~ 233 (846)
T KOG2066|consen 181 VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLV-I--GWGD-SVKICSIK 233 (846)
T ss_pred cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEE-E--ecCC-eEEEEEEe
Confidence 999999999988887632 235678998887644 4 5444 78887776
No 314
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.47 E-value=9.7e-06 Score=73.93 Aligned_cols=233 Identities=12% Similarity=0.268 Sum_probs=148.9
Q ss_pred ceeEeecCC-CcEEEEEc-CCeEEEEECCCCC-eEE--e--Ee-----------cCCCCCeEEEEEcCCC--CeEEEEEC
Q 014934 169 YLNLVDWSS-HNVLAVGL-GNCVYLWNACSSK-VTK--L--CD-----------LGIDDSVCSVGWANRN--THLAVGTS 228 (415)
Q Consensus 169 ~i~~l~ws~-~~~la~~~-d~~V~iwd~~~~~-~~~--~--~~-----------~~~~~~V~~v~~sp~g--~~la~g~~ 228 (415)
.|+++.|.- +.+||+|. +|.|.++.-.... +.. + ++ +.-...|..+.|..++ ..++..+.
T Consensus 28 ~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstN 107 (460)
T COG5170 28 KITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTN 107 (460)
T ss_pred eeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecC
Confidence 578888888 78999995 6789988754432 100 0 11 0123568889998754 36666789
Q ss_pred CCcEEEEECCCC-------------------------------------eee-----EEe-cCCCccEEEEEeeC-CEEE
Q 014934 229 HGKVQIWDASRC-------------------------------------KRV-----RTM-EGHRLRVGALAWSS-SLLS 264 (415)
Q Consensus 229 dg~V~iwd~~~~-------------------------------------~~~-----~~l-~~h~~~V~~l~~~~-~~l~ 264 (415)
|.+|++|.+... +.+ +.+ ..|.--|.++.++. ...+
T Consensus 108 dktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~et~ 187 (460)
T COG5170 108 DKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKETL 187 (460)
T ss_pred CceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchhee
Confidence 999999986321 000 011 24666677888873 3344
Q ss_pred EEeCCCcEEEEECCCCCccEE--Eecccc-----CCeEEEEEeCC-CCEEEEEeCCCcEEEEECCCCc------eeE---
Q 014934 265 SGSRDKSILQRDIRAQEDFVS--KLSGHK-----SEVCGLKWSYD-NRELASGGNDNRLFVWNQHSTQ------PVL--- 327 (415)
Q Consensus 265 sgs~dg~I~iwd~~~~~~~~~--~~~~h~-----~~V~~l~~spd-g~~lasg~~dg~I~iwd~~~~~------~~~--- 327 (415)
..+.|=.|.+|++.-...... .++.|. .-|++..|+|. .+.|.-.+..|.|++-|++... .+.
T Consensus 188 lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~ 267 (460)
T COG5170 188 LSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELT 267 (460)
T ss_pred eeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhc
Confidence 445677899999876554332 233443 34788899995 4566667888999999998431 111
Q ss_pred -------EeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCC-cEEEEeeC-------------CCCE---EEE
Q 014934 328 -------KYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTN-THLSCMDT-------------GSQV---CNL 383 (415)
Q Consensus 328 -------~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~-~~~~~~~~-------------~~~V---~~l 383 (415)
-+.+-...|..+.|++.|+++++ - .=-++++||++.. .++.++.. ...| ..+
T Consensus 268 ~D~v~~~ff~eivsSISD~kFs~ngryIls-R---dyltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFei 343 (460)
T COG5170 268 IDGVDVDFFEEIVSSISDFKFSDNGRYILS-R---DYLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEI 343 (460)
T ss_pred cCcccchhHHHHhhhhcceEEcCCCcEEEE-e---ccceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEE
Confidence 12233456788999999985554 3 2578999999864 45665531 1223 357
Q ss_pred EECCCCCeEEEEEecCCCcEEEEE
Q 014934 384 VWSKNVNELVSTHGYSQNQIIVWR 407 (415)
Q Consensus 384 ~~s~~~~~l~s~~g~~dg~I~vw~ 407 (415)
.|+.+...+++ |+-.+..-+|-
T Consensus 344 sfSgd~~~v~s--gsy~NNfgiyp 365 (460)
T COG5170 344 SFSGDDKHVLS--GSYSNNFGIYP 365 (460)
T ss_pred EecCCcccccc--cccccceeeec
Confidence 88888888887 65566666654
No 315
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.42 E-value=3.1e-05 Score=82.11 Aligned_cols=235 Identities=13% Similarity=0.214 Sum_probs=133.9
Q ss_pred ceeEeecCC-Cc-EEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEe
Q 014934 169 YLNLVDWSS-HN-VLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTM 246 (415)
Q Consensus 169 ~i~~l~ws~-~~-~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l 246 (415)
.|..+.|.. .+ ++.+..+|.|.+-|..+......-. -...|.+++|+||++.++..+..+++.+-+ .+..++..-
T Consensus 70 ~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~--vd~GI~aaswS~Dee~l~liT~~~tll~mT-~~f~~i~E~ 146 (1265)
T KOG1920|consen 70 EIVSVQFLADTNSICVITALGDIILVDPETLELEIVGN--VDNGISAASWSPDEELLALITGRQTLLFMT-KDFEPIAEK 146 (1265)
T ss_pred ceEEEEEecccceEEEEecCCcEEEEcccccceeeeee--ccCceEEEeecCCCcEEEEEeCCcEEEEEe-ccccchhcc
Confidence 466777766 44 4444467888888888776544432 357899999999999999999887775543 333322211
Q ss_pred cC-----CCccEEEEEeeC-CEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEE-----eCCCcE
Q 014934 247 EG-----HRLRVGALAWSS-SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASG-----GNDNRL 315 (415)
Q Consensus 247 ~~-----h~~~V~~l~~~~-~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg-----~~dg~I 315 (415)
.- ..+..-.+-|-. ..=+-|+. |.....+.....+......-+.. =.++.|--||+++|+. .....|
T Consensus 147 ~L~~d~~~~sk~v~VGwGrkeTqfrgs~-gr~~~~~~~~~ek~~~~~~~~~~-~~~IsWRgDg~~fAVs~~~~~~~~Rki 224 (1265)
T KOG1920|consen 147 PLDADDERKSKFVNVGWGRKETQFRGSE-GRQAARQKIEKEKALEQIEQDDH-KTSISWRGDGEYFAVSFVESETGTRKI 224 (1265)
T ss_pred ccccccccccccceecccccceeeecch-hhhcccccccccccccchhhccC-CceEEEccCCcEEEEEEEeccCCceeE
Confidence 11 112233344431 12222221 11111111111111111111222 3458899999999983 233789
Q ss_pred EEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee-----CCCCEEEEEECCCCC
Q 014934 316 FVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-----TGSQVCNLVWSKNVN 390 (415)
Q Consensus 316 ~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~-----~~~~V~~l~~s~~~~ 390 (415)
+|||-+ +..-..-+...+--.+++|-|.|..+.+...-+.|+.|.+|.-+ |-.-..+. ....|..++|+.++.
T Consensus 225 rV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErN-GL~hg~f~l~~p~de~~ve~L~Wns~sd 302 (1265)
T KOG1920|consen 225 RVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERN-GLRHGEFVLPFPLDEKEVEELAWNSNSD 302 (1265)
T ss_pred EEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecC-CccccccccCCcccccchheeeecCCCC
Confidence 999976 43222222223334679999988744444433457789999743 33322222 122388999999999
Q ss_pred eEEEEEecCCCc-EEEEECCC
Q 014934 391 ELVSTHGYSQNQ-IIVWRYPT 410 (415)
Q Consensus 391 ~l~s~~g~~dg~-I~vw~~~s 410 (415)
.|++......+. |.+|-+.+
T Consensus 303 iLAv~~~~~e~~~v~lwt~~N 323 (1265)
T KOG1920|consen 303 ILAVVTSNLENSLVQLWTTGN 323 (1265)
T ss_pred ceeeeecccccceEEEEEecC
Confidence 998743334444 99998754
No 316
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.41 E-value=0.00031 Score=64.33 Aligned_cols=194 Identities=13% Similarity=0.141 Sum_probs=116.3
Q ss_pred CCCCCeEEEEEcCCCC-eEEEEECCCcEEEEECCCCeeeEEecCC-CccEEEEEee-CCEEEEEe-CCCcEEEEECCCCC
Q 014934 206 GIDDSVCSVGWANRNT-HLAVGTSHGKVQIWDASRCKRVRTMEGH-RLRVGALAWS-SSLLSSGS-RDKSILQRDIRAQE 281 (415)
Q Consensus 206 ~~~~~V~~v~~sp~g~-~la~g~~dg~V~iwd~~~~~~~~~l~~h-~~~V~~l~~~-~~~l~sgs-~dg~I~iwd~~~~~ 281 (415)
+-...+..++|.|+.+ ++++....+.|..++. +++.++.+.-. .+..-.|++. ++.++..+ +++.+.++++....
T Consensus 19 g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~ 97 (248)
T PF06977_consen 19 GILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDT 97 (248)
T ss_dssp T--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----
T ss_pred CccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccc
Confidence 3445699999999754 6677777888888886 47777776532 3557777776 34444444 68999999884432
Q ss_pred cc-----EEEec-----cccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCC---CceeEEe--------ccCCCcEEEEE
Q 014934 282 DF-----VSKLS-----GHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHS---TQPVLKY--------CEHTAAVKAIA 340 (415)
Q Consensus 282 ~~-----~~~~~-----~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~---~~~~~~~--------~~h~~~V~~l~ 340 (415)
.. ...+. .+...+-+|+|+|.++.|+.+-...-..||.+.. ...+... ......+.+++
T Consensus 98 ~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~ 177 (248)
T PF06977_consen 98 TSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLS 177 (248)
T ss_dssp TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEE
T ss_pred cccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceE
Confidence 11 11111 3456799999999888888877776666666543 2221111 12445688999
Q ss_pred EcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCC----------CCEEEEEECCCCCeEEEEEecCCCcEEEE
Q 014934 341 WSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTG----------SQVCNLVWSKNVNELVSTHGYSQNQIIVW 406 (415)
Q Consensus 341 ~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~----------~~V~~l~~s~~~~~l~s~~g~~dg~I~vw 406 (415)
++|....+++-+. ..+.|..+| .+|+.+..+.-. .+.-+++|.++|+..++ + +-|.++++
T Consensus 178 ~~p~t~~lliLS~--es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv--s-EpNlfy~f 247 (248)
T PF06977_consen 178 YDPRTGHLLILSD--ESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV--S-EPNLFYRF 247 (248)
T ss_dssp EETTTTEEEEEET--TTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE--E-TTTEEEEE
T ss_pred EcCCCCeEEEEEC--CCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE--c-CCceEEEe
Confidence 9999888888877 899999999 778877766522 36889999999987777 3 66666665
No 317
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.37 E-value=1.1e-05 Score=82.32 Aligned_cols=106 Identities=18% Similarity=0.275 Sum_probs=87.0
Q ss_pred eeEeecCC-CcEEEEEc-----CCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeee
Q 014934 170 LNLVDWSS-HNVLAVGL-----GNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRV 243 (415)
Q Consensus 170 i~~l~ws~-~~~la~~~-----d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~ 243 (415)
-+...|+| .-++|++. +|+|-|| +++|+..+-.+ -.-.+++++|+|..-.||.|-..|.+.+|...+.+..
T Consensus 18 sti~SWHPsePlfAVA~fS~er~GSVtIf-adtGEPqr~Vt--~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~h 94 (1416)
T KOG3617|consen 18 STISSWHPSEPLFAVASFSPERGGSVTIF-ADTGEPQRDVT--YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETH 94 (1416)
T ss_pred ccccccCCCCceeEEEEecCCCCceEEEE-ecCCCCCcccc--cceehhhhccChHHHHHhhccccceeEEEecCCceee
Confidence 44568999 77888873 5789998 46777544332 2346788999999999999999999999998887776
Q ss_pred EEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECC
Q 014934 244 RTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIR 278 (415)
Q Consensus 244 ~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~ 278 (415)
.....|..+|..+.|+ |..++++..-|.+.+|...
T Consensus 95 tv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 95 TVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred eeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 6677899999999998 7899999999999999765
No 318
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.35 E-value=0.00036 Score=65.88 Aligned_cols=226 Identities=12% Similarity=0.058 Sum_probs=144.5
Q ss_pred eEEEEECCCCCeEEeEecCCC------CCeEEEEEcCCCCeEEEEEC--CCcEEEEECCCCeeeEEecCCCccEEEEEee
Q 014934 188 CVYLWNACSSKVTKLCDLGID------DSVCSVGWANRNTHLAVGTS--HGKVQIWDASRCKRVRTMEGHRLRVGALAWS 259 (415)
Q Consensus 188 ~V~iwd~~~~~~~~~~~~~~~------~~V~~v~~sp~g~~la~g~~--dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~ 259 (415)
-|.+||..+-.....+.+... .....+.++.||+++.+... --.|.|.|+...+.+..+. -.+...-.-+.
T Consensus 68 vv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~-~PGC~~iyP~~ 146 (342)
T PF06433_consen 68 VVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEID-TPGCWLIYPSG 146 (342)
T ss_dssp EEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEE-GTSEEEEEEEE
T ss_pred EEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeec-CCCEEEEEecC
Confidence 499999999887776666432 12234678899999888754 3469999999999888776 23333333344
Q ss_pred CCEEEEEeCCCcEEEEECCCCCccEEE----eccccCCe-EEEEEeCCCCEEEEEeCCCcEEEEECCCCcee--EEeccC
Q 014934 260 SSLLSSGSRDKSILQRDIRAQEDFVSK----LSGHKSEV-CGLKWSYDNRELASGGNDNRLFVWNQHSTQPV--LKYCEH 332 (415)
Q Consensus 260 ~~~l~sgs~dg~I~iwd~~~~~~~~~~----~~~h~~~V-~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~--~~~~~h 332 (415)
++-|.+-+.||.+....+....+.... +..-..++ ..-++...+..++--+.+|.|+--|+...... ..+..-
T Consensus 147 ~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~ 226 (342)
T PF06433_consen 147 NRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLL 226 (342)
T ss_dssp TTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS
T ss_pred CCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCccccc
Confidence 678999999999999998855433322 11111222 23344555666666788999999888765432 222111
Q ss_pred ----------CCcEEEEEEcCCCCcEEEEEcCCCC-------CeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEEE
Q 014934 333 ----------TAAVKAIAWSPHLHGLLASGGGTAD-------RCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVST 395 (415)
Q Consensus 333 ----------~~~V~~l~~sp~~~~llasggg~~d-------~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~ 395 (415)
.+.-.-+++++..+.|++......+ ..|.++|+.+++.+..+....++.++..+.+.+-++.+
T Consensus 227 t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~ 306 (342)
T PF06433_consen 227 TDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYA 306 (342)
T ss_dssp -HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEE
T ss_pred CccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEE
Confidence 1122346777665555544321012 24888899999999999877788899999998855543
Q ss_pred EecCCCcEEEEECCCCccc
Q 014934 396 HGYSQNQIIVWRYPTMSKV 414 (415)
Q Consensus 396 ~g~~dg~I~vw~~~s~~~l 414 (415)
....++.|.+||..+++.+
T Consensus 307 ~~~~~~~l~v~D~~tGk~~ 325 (342)
T PF06433_consen 307 LSAGDGTLDVYDAATGKLV 325 (342)
T ss_dssp EETTTTEEEEEETTT--EE
T ss_pred EcCCCCeEEEEeCcCCcEE
Confidence 2346789999999998754
No 319
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.34 E-value=0.00017 Score=71.75 Aligned_cols=219 Identities=15% Similarity=0.182 Sum_probs=121.4
Q ss_pred CcceeEeecCC-CcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEE
Q 014934 167 DFYLNLVDWSS-HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRT 245 (415)
Q Consensus 167 ~~~i~~l~ws~-~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~ 245 (415)
+++...+.++| +++++++.+|.-.|+.....+... . +.-..+.|.++++ +|+-...+.|.|+.--+.+....
T Consensus 32 ~~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~-~-----G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~~~~k~ 104 (443)
T PF04053_consen 32 EIYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKA-F-----GSGLSFVWSSRNR-YAVLESSSTIKIYKNFKNEVVKS 104 (443)
T ss_dssp SS--SEEEE-TTSSEEEEEETTEEEEEETTTTEEEE-E-----EE-SEEEE-TSSE-EEEE-TTS-EEEEETTEE-TT--
T ss_pred CcCCeeEEECCCCCEEEEEcCCEEEEEEccCCcccc-c-----CceeEEEEecCcc-EEEEECCCeEEEEEcCccccceE
Confidence 45678899999 899999999999999854433222 1 3456788998554 67777788999974333333223
Q ss_pred ecCCCccEEEEEeeCCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCC--
Q 014934 246 MEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHST-- 323 (415)
Q Consensus 246 l~~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~-- 323 (415)
+.. ...+..|-. |.+|...+.+ .|.+||+.++. .+..+... .|..+.|+++|+++|..+.+ .++|++....
T Consensus 105 i~~-~~~~~~If~-G~LL~~~~~~-~i~~yDw~~~~-~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~ 177 (443)
T PF04053_consen 105 IKL-PFSVEKIFG-GNLLGVKSSD-FICFYDWETGK-LIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILKYNLEAV 177 (443)
T ss_dssp ----SS-EEEEE--SSSEEEEETT-EEEEE-TTT---EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-HHHH
T ss_pred EcC-CcccceEEc-CcEEEEECCC-CEEEEEhhHcc-eeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEEecchhc
Confidence 332 123444433 7777766555 89999999886 56666643 38999999999999998865 5778775432
Q ss_pred ---------ceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEE
Q 014934 324 ---------QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVS 394 (415)
Q Consensus 324 ---------~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s 394 (415)
..+..+..-...|.+.+|..+ -++.+.. . .|+. +..|+.-.......++.=+.+.+..+.+..
T Consensus 178 ~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~---~-~lkY--l~~Ge~~~i~~ld~~~yllgy~~~~~~ly~ 249 (443)
T PF04053_consen 178 AAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTS---N-HLKY--LVNGETGIIAHLDKPLYLLGYLPKENRLYL 249 (443)
T ss_dssp HHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-T---T-EEEE--EETTEEEEEEE-SS--EEEEEETTTTEEEE
T ss_pred ccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcC---C-eEEE--EEcCCcceEEEcCCceEEEEEEccCCEEEE
Confidence 133333333678999999976 4555542 3 7776 445543222223556666777776677776
Q ss_pred EEecCCCcEEEEECC
Q 014934 395 THGYSQNQIIVWRYP 409 (415)
Q Consensus 395 ~~g~~dg~I~vw~~~ 409 (415)
-..|+.|..+.++
T Consensus 250 --~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 250 --IDRDGNVISYELD 262 (443)
T ss_dssp --E-TT--EEEEE--
T ss_pred --EECCCCEEEEEEC
Confidence 4577777777654
No 320
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.33 E-value=0.00027 Score=67.83 Aligned_cols=210 Identities=13% Similarity=0.139 Sum_probs=131.4
Q ss_pred CeEEEEECCCCCeEEeEecCCCCCeEEEEEcC---C----CCeEEEEEC---------C-CcEEEEECCCC----eeeEE
Q 014934 187 NCVYLWNACSSKVTKLCDLGIDDSVCSVGWAN---R----NTHLAVGTS---------H-GKVQIWDASRC----KRVRT 245 (415)
Q Consensus 187 ~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp---~----g~~la~g~~---------d-g~V~iwd~~~~----~~~~~ 245 (415)
..|++.|..+.+.+..+.+.....+++++... + ..+|++|+. . |.|.++++... ..+..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 46899999999888888887777777766543 2 468888865 2 89999999884 22222
Q ss_pred e--cCCCccEEEEEeeCCEEEEEeCCCcEEEEECCCCCccEEEeccc--cCCeEEEEEeCCCCEEEEEeCCCcEEEEECC
Q 014934 246 M--EGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLSGH--KSEVCGLKWSYDNRELASGGNDNRLFVWNQH 321 (415)
Q Consensus 246 l--~~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h--~~~V~~l~~spdg~~lasg~~dg~I~iwd~~ 321 (415)
+ ....++|.+++--++.|+++. .+.|.+|++..... +.....+ ...+.++... +++++.|+....|.++...
T Consensus 82 i~~~~~~g~V~ai~~~~~~lv~~~-g~~l~v~~l~~~~~-l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~ 157 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSFNGRLVVAV-GNKLYVYDLDNSKT-LLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYD 157 (321)
T ss_dssp EEEEEESS-EEEEEEETTEEEEEE-TTEEEEEEEETTSS-EEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEE
T ss_pred EEEEeecCcceEhhhhCCEEEEee-cCEEEEEEccCccc-chhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEE
Confidence 2 235788999988776655554 47899999988772 2222222 2345555544 6799999988888877443
Q ss_pred C-CceeEEec--cCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCC-------Cc----EEEEeeCCCCEEEE---E
Q 014934 322 S-TQPVLKYC--EHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTT-------NT----HLSCMDTGSQVCNL---V 384 (415)
Q Consensus 322 ~-~~~~~~~~--~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t-------~~----~~~~~~~~~~V~~l---~ 384 (415)
. ...+..+. .....+.++.|-+++. .++.+. .+|.|.++.... +. ....+..+..|+++ .
T Consensus 158 ~~~~~l~~va~d~~~~~v~~~~~l~d~~-~~i~~D--~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~ 234 (321)
T PF03178_consen 158 EENNKLILVARDYQPRWVTAAEFLVDED-TIIVGD--KDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGS 234 (321)
T ss_dssp TTTE-EEEEEEESS-BEEEEEEEE-SSS-EEEEEE--TTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--
T ss_pred ccCCEEEEEEecCCCccEEEEEEecCCc-EEEEEc--CCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEE
Confidence 3 22222222 2455688999987765 555554 799999987752 22 33455678888888 5
Q ss_pred ECC--CCC------eEEEEEecCCCcEEE
Q 014934 385 WSK--NVN------ELVSTHGYSQNQIIV 405 (415)
Q Consensus 385 ~s~--~~~------~l~s~~g~~dg~I~v 405 (415)
+.+ .+. .++. ++.+|.|.+
T Consensus 235 l~~~~~~~~~~~~~~i~~--~T~~G~Ig~ 261 (321)
T PF03178_consen 235 LIPRSGSSESPNRPQILY--GTVDGSIGV 261 (321)
T ss_dssp SS--SSSS-TTEEEEEEE--EETTS-EEE
T ss_pred eeecCCCCcccccceEEE--EecCCEEEE
Confidence 555 222 2555 567888874
No 321
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.32 E-value=1.9e-06 Score=54.81 Aligned_cols=38 Identities=39% Similarity=0.800 Sum_probs=34.1
Q ss_pred ceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEE
Q 014934 324 QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWN 364 (415)
Q Consensus 324 ~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd 364 (415)
+++.++.+|...|.+++|+|++. +|++++ .|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~-~~~s~~--~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGN-FLASGS--SDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSS-EEEEEE--TTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccc-cceeeC--CCCEEEEEC
Confidence 57889999999999999999976 777776 899999997
No 322
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.26 E-value=0.0013 Score=61.36 Aligned_cols=199 Identities=13% Similarity=0.083 Sum_probs=136.3
Q ss_pred CCeEEEEEcC-CCCeEEEEECCCc-EEEEECCCCeeeEEecCCCccE--EEEEee--CCEEEEEeC-----CCcEEEEEC
Q 014934 209 DSVCSVGWAN-RNTHLAVGTSHGK-VQIWDASRCKRVRTMEGHRLRV--GALAWS--SSLLSSGSR-----DKSILQRDI 277 (415)
Q Consensus 209 ~~V~~v~~sp-~g~~la~g~~dg~-V~iwd~~~~~~~~~l~~h~~~V--~~l~~~--~~~l~sgs~-----dg~I~iwd~ 277 (415)
.....++.+| .+..++++-.-|+ ..+||..+++....+....++- ..-+|+ +++|++.-. .|.|-+||.
T Consensus 5 ~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~ 84 (305)
T PF07433_consen 5 ARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDA 84 (305)
T ss_pred ccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEEC
Confidence 3456778888 5667777777665 7889999998887775433322 234555 678877644 478999999
Q ss_pred CCCCccEEEeccccCCeEEEEEeCCCCEEEEEeC------------------CCcEEEEECCCCceeEE--e--ccCCCc
Q 014934 278 RAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGN------------------DNRLFVWNQHSTQPVLK--Y--CEHTAA 335 (415)
Q Consensus 278 ~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~------------------dg~I~iwd~~~~~~~~~--~--~~h~~~ 335 (415)
...-..+..+..|.-.-..+.+.|||+.|+++.. +..|.+.|..+++.+.+ + ..|+-.
T Consensus 85 ~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lS 164 (305)
T PF07433_consen 85 ARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLS 164 (305)
T ss_pred cCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccc
Confidence 9554457777788777788999999988877521 22456667788887766 4 347888
Q ss_pred EEEEEEcCCCCcEEEEEcCCCC-------CeEEEEECCCCcEEEEee--------CCCCEEEEEECCCCCeEEEEEecCC
Q 014934 336 VKAIAWSPHLHGLLASGGGTAD-------RCIRFWNTTTNTHLSCMD--------TGSQVCNLVWSKNVNELVSTHGYSQ 400 (415)
Q Consensus 336 V~~l~~sp~~~~llasggg~~d-------~~I~iwd~~t~~~~~~~~--------~~~~V~~l~~s~~~~~l~s~~g~~d 400 (415)
|..+++.++|. ++...- .. -.|-+++- ++.+..+. -...+-+++++.++.+++++ .-.-
T Consensus 165 iRHLa~~~~G~-V~~a~Q--~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~t-sPrG 238 (305)
T PF07433_consen 165 IRHLAVDGDGT-VAFAMQ--YQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVT-SPRG 238 (305)
T ss_pred eeeEEecCCCc-EEEEEe--cCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEE-CCCC
Confidence 99999999986 333221 11 12334433 33233332 24678899999999998886 3467
Q ss_pred CcEEEEECCCCcc
Q 014934 401 NQIIVWRYPTMSK 413 (415)
Q Consensus 401 g~I~vw~~~s~~~ 413 (415)
|.+.+||..+++-
T Consensus 239 g~~~~~d~~tg~~ 251 (305)
T PF07433_consen 239 GRVAVWDAATGRL 251 (305)
T ss_pred CEEEEEECCCCCE
Confidence 8999999988753
No 323
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=5.7e-05 Score=71.28 Aligned_cols=235 Identities=11% Similarity=0.122 Sum_probs=136.6
Q ss_pred CcceeEeecCC-Cc-EEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCC-CeEEEEECCCcEEEEECCCCe-
Q 014934 167 DFYLNLVDWSS-HN-VLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRN-THLAVGTSHGKVQIWDASRCK- 241 (415)
Q Consensus 167 ~~~i~~l~ws~-~~-~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g-~~la~g~~dg~V~iwd~~~~~- 241 (415)
...|..+++|| ++ ++..+ .++.|.|.|+.+..++..+.. + ..+.+++|.-|. .+|..|...|.|.|||++..+
T Consensus 193 g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a-~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~ 270 (463)
T KOG1645|consen 193 GSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIA-Y-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEG 270 (463)
T ss_pred chhhhhhccCccccceeeeeccCceEEEEecccceeeeheec-c-CCceeeeeccCCcceeEEeccCceEEEEEccCCCc
Confidence 34578899999 43 44444 689999999999888887763 3 789999999765 577888899999999997643
Q ss_pred eeEEecC--CCccEEEEEee--------CCEEEEEeCCCcEEEEECCCCCc-cEEEe-ccccCCeEEEEEeCCCCEEE-E
Q 014934 242 RVRTMEG--HRLRVGALAWS--------SSLLSSGSRDKSILQRDIRAQED-FVSKL-SGHKSEVCGLKWSYDNRELA-S 308 (415)
Q Consensus 242 ~~~~l~~--h~~~V~~l~~~--------~~~l~sgs~dg~I~iwd~~~~~~-~~~~~-~~h~~~V~~l~~spdg~~la-s 308 (415)
.+..+.+ ...+|..++.- +.+|+..+.+ +..|.+..... ....+ .+..+.+.+++.++..+.++ +
T Consensus 271 ~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~~snh~l~t 348 (463)
T KOG1645|consen 271 PLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHGVSNHLLLT 348 (463)
T ss_pred hHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecCccceEEEE
Confidence 2222221 12334443322 3344444433 44555543221 11111 12234455566665444443 3
Q ss_pred EeCCC------cEE-EEECCCCceeEEec-cCCC----c---EEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEE
Q 014934 309 GGNDN------RLF-VWNQHSTQPVLKYC-EHTA----A---VKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSC 373 (415)
Q Consensus 309 g~~dg------~I~-iwd~~~~~~~~~~~-~h~~----~---V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~ 373 (415)
.-.+. .|. --|-.+|.++...+ .|.+ . -.++.=.++...++..++ ..+.+.+||..+++.++.
T Consensus 349 yRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd--~tn~lil~D~~s~evvQ~ 426 (463)
T KOG1645|consen 349 YRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGD--STNELILQDPHSFEVVQT 426 (463)
T ss_pred ecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecC--CcceeEEeccchhheeee
Confidence 22211 011 11223343333221 1100 0 012222455555555554 788999999999999999
Q ss_pred eeCCCCEEEEEECCC--CCeEEEEEecCCCcEEEEECCC
Q 014934 374 MDTGSQVCNLVWSKN--VNELVSTHGYSQNQIIVWRYPT 410 (415)
Q Consensus 374 ~~~~~~V~~l~~s~~--~~~l~s~~g~~dg~I~vw~~~s 410 (415)
+....+|..++.... +.+|++ -.|..++||+.++
T Consensus 427 l~~~epv~Dicp~~~n~~syLa~---LTd~~v~Iyk~es 462 (463)
T KOG1645|consen 427 LALSEPVLDICPNDTNGSSYLAL---LTDDRVHIYKNES 462 (463)
T ss_pred cccCcceeecceeecCCcchhhh---eecceEEEEecCC
Confidence 998888887765442 345555 2477899998764
No 324
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.25 E-value=0.00016 Score=74.27 Aligned_cols=190 Identities=13% Similarity=0.193 Sum_probs=128.7
Q ss_pred EEcCCCCeEEEEECCCcEEEEECCCCeeeEEecCCCcc-EEEEEeeC--CEEEEEeCCCc-----EEEEECCCCC-----
Q 014934 215 GWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLR-VGALAWSS--SLLSSGSRDKS-----ILQRDIRAQE----- 281 (415)
Q Consensus 215 ~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~~~-V~~l~~~~--~~l~sgs~dg~-----I~iwd~~~~~----- 281 (415)
+|++.+..+|.|+.+|.|.+++- ..+.++.+..+... |..+-... ++|++.+.|+. +++||+....
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP 108 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP 108 (933)
T ss_pred EEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence 46788899999999999988874 34555777777766 44333333 57888777654 8999987531
Q ss_pred ccE--EEecc-----ccCCeEEEEEeCCCCEEEEEeCCCcEEEEECC---C-CceeEEeccCCCcEEEEEEcCCCCcEEE
Q 014934 282 DFV--SKLSG-----HKSEVCGLKWSYDNRELASGGNDNRLFVWNQH---S-TQPVLKYCEHTAAVKAIAWSPHLHGLLA 350 (415)
Q Consensus 282 ~~~--~~~~~-----h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~---~-~~~~~~~~~h~~~V~~l~~sp~~~~lla 350 (415)
.++ +.+.+ ...++++++.+.+-+.+|+|-.+|.|..+.-. . +....-...-..+|+++++.-++..++.
T Consensus 109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lF 188 (933)
T KOG2114|consen 109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLF 188 (933)
T ss_pred ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEE
Confidence 222 12222 34678999999999999999999999988532 1 1111111234578999999999886333
Q ss_pred EEcCCCCCeEEEEECCCCcE-EEEee-CCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCC
Q 014934 351 SGGGTADRCIRFWNTTTNTH-LSCMD-TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTM 411 (415)
Q Consensus 351 sggg~~d~~I~iwd~~t~~~-~~~~~-~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~ 411 (415)
.. .-..|.+|.+....+ +..++ +|..+.+..+++....++++ | ..-|.+|+.+..
T Consensus 189 v~---Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca-~--~e~l~fY~sd~~ 245 (933)
T KOG2114|consen 189 VA---TTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICA-G--SEFLYFYDSDGR 245 (933)
T ss_pred EE---ecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEe-c--CceEEEEcCCCc
Confidence 33 357899999984442 33344 67788888898877756653 3 447888887643
No 325
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.24 E-value=0.00063 Score=66.29 Aligned_cols=228 Identities=17% Similarity=0.210 Sum_probs=130.2
Q ss_pred ceeEeecCC-CcEEEEEcCCeEEEEECCCCCeEEeEecCCC----------------CCeEEEEEcCCCCeEEEEECC-C
Q 014934 169 YLNLVDWSS-HNVLAVGLGNCVYLWNACSSKVTKLCDLGID----------------DSVCSVGWANRNTHLAVGTSH-G 230 (415)
Q Consensus 169 ~i~~l~ws~-~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~----------------~~V~~v~~sp~g~~la~g~~d-g 230 (415)
.+....||| ++.||...++.|++++..+++..++..-+.. +.-..+-|||||++||....| .
T Consensus 44 ~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~ 123 (353)
T PF00930_consen 44 KLQDAKWSPDGKYIAFVRDNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDER 123 (353)
T ss_dssp TBSEEEE-SSSTEEEEEETTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-T
T ss_pred ccccceeecCCCeeEEEecCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCc
Confidence 355778999 8999999999999999988866655542311 123567899999999886443 2
Q ss_pred cEE-----------------------------------EEECCCCeeeE--Ee---cCCCccEEEEEeeC--CEEEEE--
Q 014934 231 KVQ-----------------------------------IWDASRCKRVR--TM---EGHRLRVGALAWSS--SLLSSG-- 266 (415)
Q Consensus 231 ~V~-----------------------------------iwd~~~~~~~~--~l---~~h~~~V~~l~~~~--~~l~sg-- 266 (415)
.|. |+|+.+++... .. ..-...+..+.|.+ ..|+..
T Consensus 124 ~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~ 203 (353)
T PF00930_consen 124 EVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWL 203 (353)
T ss_dssp TS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEE
T ss_pred CCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEc
Confidence 222 23443333211 01 12234567777762 323333
Q ss_pred eCCC---cEEEEECCCCCccEEEeccccCC---eEEEEEe-CCCCEEE-EEeCCC--cEEEEECCCCceeEEeccCCCcE
Q 014934 267 SRDK---SILQRDIRAQEDFVSKLSGHKSE---VCGLKWS-YDNRELA-SGGNDN--RLFVWNQHSTQPVLKYCEHTAAV 336 (415)
Q Consensus 267 s~dg---~I~iwd~~~~~~~~~~~~~h~~~---V~~l~~s-pdg~~la-sg~~dg--~I~iwd~~~~~~~~~~~~h~~~V 336 (415)
.++. .+.++|..++............. -....|. +++..++ ....|| .|++++...+. ...+....-.|
T Consensus 204 nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~~V 282 (353)
T PF00930_consen 204 NRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGDWEV 282 (353)
T ss_dssp ETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SSS-E
T ss_pred ccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccCceee
Confidence 3333 35666776654322221212222 2345554 6655544 444666 46666776665 34565556667
Q ss_pred EE-EEEcCCCCcEEEEEcCC--CCCeEEEEECCCCcEEEEeeCCCCE-EEEEECCCCCeEEEEEe
Q 014934 337 KA-IAWSPHLHGLLASGGGT--ADRCIRFWNTTTNTHLSCMDTGSQV-CNLVWSKNVNELVSTHG 397 (415)
Q Consensus 337 ~~-l~~sp~~~~llasggg~--~d~~I~iwd~~t~~~~~~~~~~~~V-~~l~~s~~~~~l~s~~g 397 (415)
.. +.|.+.+..++.++.+. ....|..-++..+..+..+...... ..+.|||++++++.++.
T Consensus 283 ~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 283 TSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYVDTYS 347 (353)
T ss_dssp EEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSSEEEEEEE
T ss_pred cccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCCEEEEEEc
Confidence 54 78899988888777631 2456777777734445566544333 58999999999988654
No 326
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.21 E-value=0.0013 Score=65.22 Aligned_cols=210 Identities=15% Similarity=0.155 Sum_probs=114.7
Q ss_pred eecCC-CcEEEEEcCC------------eEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCC
Q 014934 173 VDWSS-HNVLAVGLGN------------CVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASR 239 (415)
Q Consensus 173 l~ws~-~~~la~~~d~------------~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~ 239 (415)
++-+| +..||+..+. .|.||+... +.+..+.... +.+.++.|+.+.. |++-..||.+++||+..
T Consensus 34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~sG-~ll~~i~w~~-~~iv~~~wt~~e~-LvvV~~dG~v~vy~~~G 110 (410)
T PF04841_consen 34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSSG-KLLSSIPWDS-GRIVGMGWTDDEE-LVVVQSDGTVRVYDLFG 110 (410)
T ss_pred EEEcCCCceEEEEecCcccccccCCCCcEEEEECCCC-CEeEEEEECC-CCEEEEEECCCCe-EEEEEcCCEEEEEeCCC
Confidence 34455 5666666555 589998754 4445555455 8999999998655 55567999999999863
Q ss_pred Ce------eeEEecCCCccEEEEEeeCCEEEEEeCCCcEEEEECCCCCccEEEec---c-----ccCCeE--EEEEeCCC
Q 014934 240 CK------RVRTMEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLS---G-----HKSEVC--GLKWSYDN 303 (415)
Q Consensus 240 ~~------~~~~l~~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~---~-----h~~~V~--~l~~spdg 303 (415)
.. .+....-....+....+.+.-++.-..++.+++..--........+. . |..... ...++.+.
T Consensus 111 ~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~ 190 (410)
T PF04841_consen 111 EFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDR 190 (410)
T ss_pred ceeechhhhccccCcccccccccccCCCCEEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCc
Confidence 22 11111111222333232212233333445454442211110111110 0 000000 02344455
Q ss_pred CEEEEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCC--CCEE
Q 014934 304 RELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTG--SQVC 381 (415)
Q Consensus 304 ~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~--~~V~ 381 (415)
...+....++.+.+.+....+. + ...+++..++.||+++ .+|.-. .+|.+.+.+..-.+.+.+++.+ ....
T Consensus 191 ~~~i~~~~g~~i~~i~~~~~~~---i-~~~~~i~~iavSpng~-~iAl~t--~~g~l~v~ssDf~~~~~e~~~~~~~~p~ 263 (410)
T PF04841_consen 191 VVEILLANGETIYIIDENSFKQ---I-DSDGPIIKIAVSPNGK-FIALFT--DSGNLWVVSSDFSEKLCEFDTDSKSPPK 263 (410)
T ss_pred ceEEEEecCCEEEEEEcccccc---c-cCCCCeEEEEECCCCC-EEEEEE--CCCCEEEEECcccceeEEeecCcCCCCc
Confidence 5555555555666444332211 2 2346899999999998 555554 6899999987777777777655 5667
Q ss_pred EEEECCCCCeE
Q 014934 382 NLVWSKNVNEL 392 (415)
Q Consensus 382 ~l~~s~~~~~l 392 (415)
.+.|.-++-.+
T Consensus 264 ~~~WCG~dav~ 274 (410)
T PF04841_consen 264 QMAWCGNDAVV 274 (410)
T ss_pred EEEEECCCcEE
Confidence 78887765433
No 327
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.19 E-value=0.00055 Score=67.27 Aligned_cols=199 Identities=18% Similarity=0.255 Sum_probs=116.5
Q ss_pred CeEEEEEcCCCCeEEEEECCCcEEEEECCCCe-------------------------------------------eeEEe
Q 014934 210 SVCSVGWANRNTHLAVGTSHGKVQIWDASRCK-------------------------------------------RVRTM 246 (415)
Q Consensus 210 ~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~-------------------------------------------~~~~l 246 (415)
.|+.+.|+++..-||+|...|.|.||.....+ +...+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 58899999998889999999999998642211 11112
Q ss_pred cCCCccEEEEEeeC-CEEEEEeCCCcEEEEECCCCCccEEE--ecc------ccCCeEEEEEeC-----CC---CEEEEE
Q 014934 247 EGHRLRVGALAWSS-SLLSSGSRDKSILQRDIRAQEDFVSK--LSG------HKSEVCGLKWSY-----DN---RELASG 309 (415)
Q Consensus 247 ~~h~~~V~~l~~~~-~~l~sgs~dg~I~iwd~~~~~~~~~~--~~~------h~~~V~~l~~sp-----dg---~~lasg 309 (415)
....++|++++.++ .+++.|..+|.+.|.|+|.+. .+.. +.. ....|+++.|.. |+ -.|++|
T Consensus 83 ~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPa-vI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 83 DAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPA-VIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp ---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTE-EEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred eccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCe-EEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 23467899999874 799999999999999998876 3322 111 234588888873 33 468899
Q ss_pred eCCCcEEEEECC-C--Ccee----EEeccCCCcEEEEE-EcCC-C-------------------CcEEEEEcCCCCCeEE
Q 014934 310 GNDNRLFVWNQH-S--TQPV----LKYCEHTAAVKAIA-WSPH-L-------------------HGLLASGGGTADRCIR 361 (415)
Q Consensus 310 ~~dg~I~iwd~~-~--~~~~----~~~~~h~~~V~~l~-~sp~-~-------------------~~llasggg~~d~~I~ 361 (415)
.+.|.+.+|.+. . +... .....+.+.|..|. +..+ | +.+++.++ +..||
T Consensus 162 Tn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS---e~~ir 238 (395)
T PF08596_consen 162 TNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS---ESDIR 238 (395)
T ss_dssp ETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE----SSEEE
T ss_pred eCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc---ccceE
Confidence 999999999874 1 2111 11224556666654 3221 1 12455553 78999
Q ss_pred EEECCCCcEEEEeeCCCCEE-EEEEC-----CCCCeEEEEEecCCCcEEEEECCCCccc
Q 014934 362 FWNTTTNTHLSCMDTGSQVC-NLVWS-----KNVNELVSTHGYSQNQIIVWRYPTMSKV 414 (415)
Q Consensus 362 iwd~~t~~~~~~~~~~~~V~-~l~~s-----~~~~~l~s~~g~~dg~I~vw~~~s~~~l 414 (415)
++...+.+..+.......++ .+.+- ..+..|++ =..+|.|+++.+|.++++
T Consensus 239 v~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~--l~~~G~i~i~SLP~Lkei 295 (395)
T PF08596_consen 239 VFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVC--LFNNGSIRIYSLPSLKEI 295 (395)
T ss_dssp EE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEE--EETTSEEEEEETTT--EE
T ss_pred EEeCCCCcccceeeccccccceEEEEeecccCCceEEEE--EECCCcEEEEECCCchHh
Confidence 99999888776655222232 34442 24555666 457999999999999876
No 328
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.14 E-value=0.00053 Score=69.72 Aligned_cols=199 Identities=12% Similarity=-0.013 Sum_probs=124.3
Q ss_pred CCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCC----cEEEEECCCCeeeEEecCCCccEEEEEeeCC
Q 014934 186 GNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHG----KVQIWDASRCKRVRTMEGHRLRVGALAWSSS 261 (415)
Q Consensus 186 d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg----~V~iwd~~~~~~~~~l~~h~~~V~~l~~~~~ 261 (415)
.+.+.+.|..+.++...+..+ +....+.++++|+++++.+.+. ++..-+..+...+..+.- ..+..+.-+++
T Consensus 214 ~~~vSvID~etmeV~~qV~Vd--gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni--~~iea~vkdGK 289 (635)
T PRK02888 214 RSLFTAVDAETMEVAWQVMVD--GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNI--ARIEEAVKAGK 289 (635)
T ss_pred eEEEEEEECccceEEEEEEeC--CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEch--HHHHHhhhCCC
Confidence 356778888887776666543 3567789999999998886432 232222222211111110 00111111244
Q ss_pred EEEEEeCCCcEEEEECCC----CCccEEEeccccCCeEEEEEeCCCCEEEEEe-CCCcEEEEECCCCce-----------
Q 014934 262 LLSSGSRDKSILQRDIRA----QEDFVSKLSGHKSEVCGLKWSYDNRELASGG-NDNRLFVWNQHSTQP----------- 325 (415)
Q Consensus 262 ~l~sgs~dg~I~iwd~~~----~~~~~~~~~~h~~~V~~l~~spdg~~lasg~-~dg~I~iwd~~~~~~----------- 325 (415)
+... .++.|.+.|.++ .......+ .-.....++.++|||+++++++ .++.|.|.|+.+.+.
T Consensus 290 ~~~V--~gn~V~VID~~t~~~~~~~v~~yI-PVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~ 366 (635)
T PRK02888 290 FKTI--GGSKVPVVDGRKAANAGSALTRYV-PVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDA 366 (635)
T ss_pred EEEE--CCCEEEEEECCccccCCcceEEEE-ECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccce
Confidence 4444 367899999987 33233333 3456788999999999987655 589999999987543
Q ss_pred -eEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCC----------CcEEEEeeCCCCEEEEEE------CCC
Q 014934 326 -VLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTT----------NTHLSCMDTGSQVCNLVW------SKN 388 (415)
Q Consensus 326 -~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t----------~~~~~~~~~~~~V~~l~~------s~~ 388 (415)
+.+.+- ...-...+|.++|. .++|-- .|..|..||+.+ ...+..++.+.++-.+.- .++
T Consensus 367 vvaevev-GlGPLHTaFDg~G~-aytslf--~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~d 442 (635)
T PRK02888 367 VVAEPEL-GLGPLHTAFDGRGN-AYTTLF--LDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEAD 442 (635)
T ss_pred EEEeecc-CCCcceEEECCCCC-EEEeEe--ecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCC
Confidence 222221 22334578888886 777765 799999999986 345666665555555555 678
Q ss_pred CCeEEEE
Q 014934 389 VNELVST 395 (415)
Q Consensus 389 ~~~l~s~ 395 (415)
|++|++.
T Consensus 443 gk~l~~~ 449 (635)
T PRK02888 443 GKWLVSL 449 (635)
T ss_pred CCEEEEc
Confidence 8888773
No 329
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.13 E-value=0.00068 Score=68.50 Aligned_cols=110 Identities=27% Similarity=0.447 Sum_probs=81.7
Q ss_pred ceeEeecCCCcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCee-----
Q 014934 169 YLNLVDWSSHNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKR----- 242 (415)
Q Consensus 169 ~i~~l~ws~~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~----- 242 (415)
+++|++-. ..+++.| +-|.||+|+-.+++......-+..+.+..+..+++..++|.|+..|.|.++-+.....
T Consensus 37 ~lTc~dst-~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~ 115 (726)
T KOG3621|consen 37 KLTCVDAT-EEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDY 115 (726)
T ss_pred EEEEeecC-CceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCccee
Confidence 45566544 5667777 4689999998887765554323455667777889999999999999999998865321
Q ss_pred eEEe-cCCCccEEEEEee--CCEEEEEeCCCcEEEEECCC
Q 014934 243 VRTM-EGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRA 279 (415)
Q Consensus 243 ~~~l-~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~ 279 (415)
+... ..|..+|++++|+ +..+++|...|+|....+..
T Consensus 116 ~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 116 VTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred eccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 1112 2478899999998 57899999999998877765
No 330
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.13 E-value=0.00084 Score=69.23 Aligned_cols=213 Identities=13% Similarity=0.171 Sum_probs=129.0
Q ss_pred cCC-CcEEEEE-cCCeEEEEECCCCCeEEeEecCCCC-CeEEEEEcCCCCeEEEEECCC-----cEEEEECCCC------
Q 014934 175 WSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDD-SVCSVGWANRNTHLAVGTSHG-----KVQIWDASRC------ 240 (415)
Q Consensus 175 ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~-~V~~v~~sp~g~~la~g~~dg-----~V~iwd~~~~------ 240 (415)
|++ +..++.| .+|.|.+++-.- +...-+. .+.. .|+.+-...+..+|++-+.|+ .|+|||++..
T Consensus 31 ~~s~~~~vvigt~~G~V~~Ln~s~-~~~~~fq-a~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP 108 (933)
T KOG2114|consen 31 CSSSTGSVVIGTADGRVVILNSSF-QLIRGFQ-AYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP 108 (933)
T ss_pred EcCCCceEEEeeccccEEEecccc-eeeehhe-ecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence 444 4555555 689999987432 2212222 2222 344444333446676665554 4899998542
Q ss_pred eee---EEec----CCCccEEEEEeeC--CEEEEEeCCCcEEEEE--C-CCCCccEEEeccccCCeEEEEEeCCCCEEEE
Q 014934 241 KRV---RTME----GHRLRVGALAWSS--SLLSSGSRDKSILQRD--I-RAQEDFVSKLSGHKSEVCGLKWSYDNRELAS 308 (415)
Q Consensus 241 ~~~---~~l~----~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd--~-~~~~~~~~~~~~h~~~V~~l~~spdg~~las 308 (415)
.++ +.+. ....++.+++.+. ..+++|-.+|.|..+. + |............+.+|+++.+..++..++-
T Consensus 109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lF 188 (933)
T KOG2114|consen 109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLF 188 (933)
T ss_pred ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEE
Confidence 233 2222 1245677888873 6899999999999884 2 2222112233344678999999988887333
Q ss_pred EeCCCcEEEEECCCCcee-EEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCCCEEEEEECC
Q 014934 309 GGNDNRLFVWNQHSTQPV-LKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSK 387 (415)
Q Consensus 309 g~~dg~I~iwd~~~~~~~-~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~ 387 (415)
...-..|.+|.+....+. ..+..|...+.|..+++....+++++ +..|.+|+......-..+..+..-. +.|..
T Consensus 189 v~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~----~e~l~fY~sd~~~~cfaf~~g~kk~-~~~~~ 263 (933)
T KOG2114|consen 189 VATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG----SEFLYFYDSDGRGPCFAFEVGEKKE-MLVFS 263 (933)
T ss_pred EEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec----CceEEEEcCCCcceeeeecCCCeEE-EEEEe
Confidence 333457999999855544 44777888899999998765455554 5789999998665555554333222 33333
Q ss_pred CCCeEEE
Q 014934 388 NVNELVS 394 (415)
Q Consensus 388 ~~~~l~s 394 (415)
.|..|++
T Consensus 264 ~g~~L~v 270 (933)
T KOG2114|consen 264 FGLLLCV 270 (933)
T ss_pred cCEEEEE
Confidence 3444444
No 331
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.12 E-value=1e-06 Score=87.24 Aligned_cols=197 Identities=19% Similarity=0.246 Sum_probs=135.7
Q ss_pred CCCeEEEEEcCCC--CeEEEEECCCcEEEEECCCCe--eeEEecCCCccEEEEEeeC---CEEEEEe----CCCcEEEEE
Q 014934 208 DDSVCSVGWANRN--THLAVGTSHGKVQIWDASRCK--RVRTMEGHRLRVGALAWSS---SLLSSGS----RDKSILQRD 276 (415)
Q Consensus 208 ~~~V~~v~~sp~g--~~la~g~~dg~V~iwd~~~~~--~~~~l~~h~~~V~~l~~~~---~~l~sgs----~dg~I~iwd 276 (415)
...+.|+++..+. ..+++|..+|.|-+-...... -.....+|...+++++|++ +.|+.|- .|..+.|||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 4578888887644 489999999999998875432 2344567889999999994 5677663 456799999
Q ss_pred CCCCCc-cE--EEec-cccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCc-eeEEeccCCCcEEEEEEcCCCCcEEEE
Q 014934 277 IRAQED-FV--SKLS-GHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQ-PVLKYCEHTAAVKAIAWSPHLHGLLAS 351 (415)
Q Consensus 277 ~~~~~~-~~--~~~~-~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~-~~~~~~~h~~~V~~l~~sp~~~~llas 351 (415)
+.+.-. +. ..+. +......+++|..+.+++.+|.....+.++|++... .... -.+..|..+...|.....+++
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~s--vnTk~vqG~tVdp~~~nY~cs 213 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSS--VNTKYVQGITVDPFSPNYFCS 213 (783)
T ss_pred cccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhh--hhhhhcccceecCCCCCceec
Confidence 987621 11 1112 233456688999999999999999999999998432 1222 234467778888977778887
Q ss_pred EcCCCCCeEEEEEC-CCC-cEEEEeeC-----CCCEEEEEECCCCCeEEEEEecCCCcEEEEECC
Q 014934 352 GGGTADRCIRFWNT-TTN-THLSCMDT-----GSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYP 409 (415)
Q Consensus 352 ggg~~d~~I~iwd~-~t~-~~~~~~~~-----~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~ 409 (415)
. .|+.|.+||. ..- .++..+.+ ..++..++|+|...-+.++..-..+.|+++++.
T Consensus 214 ~---~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 214 N---SDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred c---ccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 6 5999999994 222 22222221 236999999997655544434566788888875
No 332
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.11 E-value=0.00064 Score=69.13 Aligned_cols=105 Identities=10% Similarity=0.144 Sum_probs=80.5
Q ss_pred eCCCCEEEEEeCCCcEEEEECCC----CceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcE-----
Q 014934 300 SYDNRELASGGNDNRLFVWNQHS----TQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTH----- 370 (415)
Q Consensus 300 spdg~~lasg~~dg~I~iwd~~~----~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~----- 370 (415)
.++|++... .++.|.+.|.++ +..+..+-.-......++++|+|+++++++. .+.++.|.|+.+.+.
T Consensus 285 vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVank--lS~tVSVIDv~k~k~~~~~~ 360 (635)
T PRK02888 285 VKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGK--LSPTVTVIDVRKLDDLFDGK 360 (635)
T ss_pred hhCCCEEEE--CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCC--CCCcEEEEEChhhhhhhhcc
Confidence 457877665 367899999988 3333333345566788999999999999887 899999999988653
Q ss_pred -------EEEeeCCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCC
Q 014934 371 -------LSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPT 410 (415)
Q Consensus 371 -------~~~~~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s 410 (415)
+.++..+..-...+|+.+|+...+ -+-|.+|..|++..
T Consensus 361 ~~~~~~vvaevevGlGPLHTaFDg~G~ayts--lf~dsqv~kwn~~~ 405 (635)
T PRK02888 361 IKPRDAVVAEPELGLGPLHTAFDGRGNAYTT--LFLDSQIVKWNIEA 405 (635)
T ss_pred CCccceEEEeeccCCCcceEEECCCCCEEEe--EeecceeEEEehHH
Confidence 455556666778999999985555 56789999999875
No 333
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.08 E-value=0.00026 Score=74.42 Aligned_cols=134 Identities=16% Similarity=0.122 Sum_probs=101.3
Q ss_pred CCCcEEEEECCCCeeeEEecCCCcc-EEEEEee-------CCEEEEEeCCCcEEEEECCCCCccEEEec----cccCCeE
Q 014934 228 SHGKVQIWDASRCKRVRTMEGHRLR-VGALAWS-------SSLLSSGSRDKSILQRDIRAQEDFVSKLS----GHKSEVC 295 (415)
Q Consensus 228 ~dg~V~iwd~~~~~~~~~l~~h~~~-V~~l~~~-------~~~l~sgs~dg~I~iwd~~~~~~~~~~~~----~h~~~V~ 295 (415)
....|+-.|++.|+.+.....|... |..++-. +...+.|-.+..+..||.|-....+..-. .......
T Consensus 502 ~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs 581 (794)
T PF08553_consen 502 NPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFS 581 (794)
T ss_pred CCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCce
Confidence 4577999999999999999877644 7777654 45677888899999999997542222111 2344577
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECC
Q 014934 296 GLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTT 366 (415)
Q Consensus 296 ~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~ 366 (415)
|++-+.+| +||+|+.+|.|++||-...+.-..+.+-..+|.+|..+.+|+++|||+ +..|.++++.
T Consensus 582 ~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc----~tyLlLi~t~ 647 (794)
T PF08553_consen 582 CFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC----KTYLLLIDTL 647 (794)
T ss_pred EEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee----cceEEEEEEe
Confidence 77777655 899999999999999544344445556678999999999999999997 6788888863
No 334
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.07 E-value=0.0016 Score=59.29 Aligned_cols=191 Identities=12% Similarity=0.150 Sum_probs=109.5
Q ss_pred eEeecCC-CcEEEEE-cCCeEEEEECCCCCeEEeEe-----cCCCCCeEEEEEcCCC------CeEEEEECCCcEEEEEC
Q 014934 171 NLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCD-----LGIDDSVCSVGWANRN------THLAVGTSHGKVQIWDA 237 (415)
Q Consensus 171 ~~l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~-----~~~~~~V~~v~~sp~g------~~la~g~~dg~V~iwd~ 237 (415)
..++||| +.+||.+ +.|+|+++|+...++..+-. ..-...|..+.|.+-. ..|++-..+|.++=|-+
T Consensus 47 Rkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~v 126 (282)
T PF15492_consen 47 RKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLV 126 (282)
T ss_pred eEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEE
Confidence 3689999 7788888 46899999997655432211 0123567777775421 24666678888887775
Q ss_pred CC-----CeeeEEec---CCCccEEEEEeeC--CEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCE--
Q 014934 238 SR-----CKRVRTME---GHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRE-- 305 (415)
Q Consensus 238 ~~-----~~~~~~l~---~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~-- 305 (415)
.. .+...++. .+...|+++.+++ ++|++|+.... .. . .-.+....+++-..-.+..+
T Consensus 127 s~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------~~-~----~s~a~~~GLtaWRiL~~~Pyyk 195 (282)
T PF15492_consen 127 SVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN------QD-G----MSKASSCGLTAWRILSDSPYYK 195 (282)
T ss_pred EcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC------CC-c----cccccccCceEEEEcCCCCcEE
Confidence 32 23333333 2467899999995 56666654322 00 0 00111222332222211111
Q ss_pred EEEEeCCC------cEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee
Q 014934 306 LASGGNDN------RLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD 375 (415)
Q Consensus 306 lasg~~dg------~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~ 375 (415)
.++...|+ +..+|.+-+.+...........|..+..||+|. +||+.. .+|.|.+|++.+-.+.....
T Consensus 196 ~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~-~La~ih--~sG~lsLW~iPsL~~~~~W~ 268 (282)
T PF15492_consen 196 QVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGS-LLACIH--FSGSLSLWEIPSLRLQRSWK 268 (282)
T ss_pred EccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCC-EEEEEE--cCCeEEEEecCcchhhcccc
Confidence 11222222 123444433322222234567899999999998 777776 89999999999877666554
No 335
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.06 E-value=0.0002 Score=71.15 Aligned_cols=131 Identities=18% Similarity=0.183 Sum_probs=87.8
Q ss_pred eEEEEECCCCCeEEeEecCCCCCeEEEEEcC-CCCeEEEE----ECCCc----EEEEECCCCeeeE--Ee-cCCCccEEE
Q 014934 188 CVYLWNACSSKVTKLCDLGIDDSVCSVGWAN-RNTHLAVG----TSHGK----VQIWDASRCKRVR--TM-EGHRLRVGA 255 (415)
Q Consensus 188 ~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp-~g~~la~g----~~dg~----V~iwd~~~~~~~~--~l-~~h~~~V~~ 255 (415)
.+.++....++...+.....+....++.|+- ++..+.+. +.+|. -.+|++...+..+ .. -.....|.+
T Consensus 185 Nl~L~~~~~~klEvL~yirTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ 264 (545)
T PF11768_consen 185 NLHLLSCSGGKLEVLSYIRTENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVIC 264 (545)
T ss_pred cEEEEEecCCcEEEEEEEEecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceE
Confidence 4555555555544444333344557777775 33444432 23444 3456665543221 11 136778999
Q ss_pred EEeeC--CEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECC
Q 014934 256 LAWSS--SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQH 321 (415)
Q Consensus 256 l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~ 321 (415)
.++++ +.|+.|+.||.|.+||...+.. ......-....++|+|+|..|++|+.-|.+.+||+.
T Consensus 265 ca~sp~E~kLvlGC~DgSiiLyD~~~~~t---~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~A 329 (545)
T PF11768_consen 265 CARSPSEDKLVLGCEDGSIILYDTTRGVT---LLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMA 329 (545)
T ss_pred EecCcccceEEEEecCCeEEEEEcCCCee---eeeeecccceEEEEcCCCcEEEEEcCCceEEEEEee
Confidence 99984 7999999999999999976642 222344567889999999999999999999999975
No 336
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.05 E-value=0.00034 Score=69.41 Aligned_cols=203 Identities=15% Similarity=0.192 Sum_probs=129.3
Q ss_pred eEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEE---CC-CcEEEEECCCCeeeEEecCCCccEEEEEeeC---
Q 014934 188 CVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGT---SH-GKVQIWDASRCKRVRTMEGHRLRVGALAWSS--- 260 (415)
Q Consensus 188 ~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~---~d-g~V~iwd~~~~~~~~~l~~h~~~V~~l~~~~--- 260 (415)
.+++-|.. +.....+. .....+..-+|+|+++.++.-. .. ..+.++|+.+++....+. ..+.-..-+|+|
T Consensus 174 ~l~~~D~d-g~~~~~l~-~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~ 250 (425)
T COG0823 174 ELALGDYD-GYNQQKLT-DSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGS 250 (425)
T ss_pred eEEEEccC-CcceeEec-ccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCC
Confidence 45555554 44444443 3356778889999998766542 22 359999998886555544 223334456663
Q ss_pred CEEEEEeCCCc--EEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCC-C--cEEEEECCCCceeEEeccCCCc
Q 014934 261 SLLSSGSRDKS--ILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGND-N--RLFVWNQHSTQPVLKYCEHTAA 335 (415)
Q Consensus 261 ~~l~sgs~dg~--I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~d-g--~I~iwd~~~~~~~~~~~~h~~~ 335 (415)
.++++..+||. |++.|+.... ...+....+.-+.-.|+|||+.++-.+.. | .|.++|...+.. ..+......
T Consensus 251 ~l~f~~~rdg~~~iy~~dl~~~~--~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~ 327 (425)
T COG0823 251 KLAFSSSRDGSPDIYLMDLDGKN--LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGG 327 (425)
T ss_pred EEEEEECCCCCccEEEEcCCCCc--ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCC
Confidence 46667777875 6666877766 33344333444467899999998876543 3 578888876654 344333333
Q ss_pred EEEEEEcCCCCcEEEEEcCCCCCe--EEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEEEEec
Q 014934 336 VKAIAWSPHLHGLLASGGGTADRC--IRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGY 398 (415)
Q Consensus 336 V~~l~~sp~~~~llasggg~~d~~--I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~ 398 (415)
-..-.|+|+|+.++.... .+|. |.+.|+.++..++.+........-.|.+++..++..++.
T Consensus 328 ~~~p~~SpdG~~i~~~~~--~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~~s~~ 390 (425)
T COG0823 328 NSNPVWSPDGDKIVFESS--SGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMFSSGQ 390 (425)
T ss_pred CcCccCCCCCCEEEEEec--cCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEEeccC
Confidence 337889999997777663 3444 777777777655555555555667788888887775443
No 337
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.03 E-value=0.0026 Score=64.74 Aligned_cols=230 Identities=10% Similarity=0.056 Sum_probs=134.6
Q ss_pred CcEEEEEcCCeEEEEECCCCCeEEeEecCCCC-CeEEEEEcC--CCCeEEEEE---------CCCcEEEEECCCCeeeEE
Q 014934 178 HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDD-SVCSVGWAN--RNTHLAVGT---------SHGKVQIWDASRCKRVRT 245 (415)
Q Consensus 178 ~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~-~V~~v~~sp--~g~~la~g~---------~dg~V~iwd~~~~~~~~~ 245 (415)
+.+++...++.|+-+|..+|+..-........ .-..+.-+| .+..+++|+ .+|.|..+|..+++.+-.
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~ 190 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWR 190 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeE
Confidence 45555557899999999999987766543211 001111122 234555654 367899999999987765
Q ss_pred ecCCCc--------------------cE-EEEEee--CCEEEEEeCCC------------------cEEEEECCCCCccE
Q 014934 246 MEGHRL--------------------RV-GALAWS--SSLLSSGSRDK------------------SILQRDIRAQEDFV 284 (415)
Q Consensus 246 l~~h~~--------------------~V-~~l~~~--~~~l~sgs~dg------------------~I~iwd~~~~~~~~ 284 (415)
+..... .| ...+.. ...++.++.++ .|.-+|..+++..-
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W 270 (488)
T cd00216 191 FYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKW 270 (488)
T ss_pred eeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEE
Confidence 542111 01 012222 46778887665 68889998887432
Q ss_pred EEecc-ccC---Ce-EEEEEe----CCCC---EEEEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEE
Q 014934 285 SKLSG-HKS---EV-CGLKWS----YDNR---ELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASG 352 (415)
Q Consensus 285 ~~~~~-h~~---~V-~~l~~s----pdg~---~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasg 352 (415)
..-.. |.. .. ....+. -++. .++.++.+|.+...|.++++.+.+.... ...++..| + .+++..
T Consensus 271 ~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~-~-~vyv~~ 345 (488)
T cd00216 271 FYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP-G-LVYLGA 345 (488)
T ss_pred EeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC-c-eEEEcc
Confidence 22111 110 00 001111 1343 5778889999999999999998876422 11233444 2 233321
Q ss_pred c---------------CCCCCeEEEEECCCCcEEEEeeCC---------CCEEEEEECCCCCeEEEEEecCCCcEEEEEC
Q 014934 353 G---------------GTADRCIRFWNTTTNTHLSCMDTG---------SQVCNLVWSKNVNELVSTHGYSQNQIIVWRY 408 (415)
Q Consensus 353 g---------------g~~d~~I~iwd~~t~~~~~~~~~~---------~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~ 408 (415)
. ...++.|.-.|+.+|+.+...... .....-.....+..|++ |+.||.|+.+|.
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~--g~~dG~l~ald~ 423 (488)
T cd00216 346 FHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFA--GAADGYFRAFDA 423 (488)
T ss_pred ccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEE--ECCCCeEEEEEC
Confidence 0 114678999999999988877654 11111111124566666 678999999999
Q ss_pred CCCccc
Q 014934 409 PTMSKV 414 (415)
Q Consensus 409 ~s~~~l 414 (415)
.+++.+
T Consensus 424 ~tG~~l 429 (488)
T cd00216 424 TTGKEL 429 (488)
T ss_pred CCCcee
Confidence 888754
No 338
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.99 E-value=0.0065 Score=55.72 Aligned_cols=194 Identities=13% Similarity=0.123 Sum_probs=110.2
Q ss_pred CCCCCCcceeEeecCC--CcEEEEEc-CCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECC
Q 014934 162 PALQDDFYLNLVDWSS--HNVLAVGL-GNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDAS 238 (415)
Q Consensus 162 ~~l~~~~~i~~l~ws~--~~~la~~~-d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~ 238 (415)
|.+.++ +..+.|+| +.++|+.. .+.|+.++. +|++.+.+.+...+..-.|++..++.++++--.++.+.++++.
T Consensus 18 ~g~~~e--~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 18 PGILDE--LSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp TT--S---EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred CCccCC--ccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 455544 88999998 44666664 468888886 5788888877555678899998888777665568899999883
Q ss_pred CCe------eeEEec-----CCCccEEEEEeeC--CEEEEEeCCCcEEEEECCC--CCccE--EEec------cccCCeE
Q 014934 239 RCK------RVRTME-----GHRLRVGALAWSS--SLLSSGSRDKSILQRDIRA--QEDFV--SKLS------GHKSEVC 295 (415)
Q Consensus 239 ~~~------~~~~l~-----~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~--~~~~~--~~~~------~h~~~V~ 295 (415)
... ....+. .+...+-.++|++ +.|+.+-...-..++.+.. ..... .... .....+.
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S 174 (248)
T PF06977_consen 95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS 174 (248)
T ss_dssp ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence 321 112221 3456689999983 5666666665556665543 11111 1111 2334688
Q ss_pred EEEEeCC-CCEEEEEeCCCcEEEEECCCCceeEEeccCC---------CcEEEEEEcCCCCcEEEEEcCCCCCeEEEE
Q 014934 296 GLKWSYD-NRELASGGNDNRLFVWNQHSTQPVLKYCEHT---------AAVKAIAWSPHLHGLLASGGGTADRCIRFW 363 (415)
Q Consensus 296 ~l~~spd-g~~lasg~~dg~I~iwd~~~~~~~~~~~~h~---------~~V~~l~~sp~~~~llasggg~~d~~I~iw 363 (415)
+++++|. +.+++....+..|.++| .+|+++..+.-.. ...-.|+|.++|. |++++ +.+..++|
T Consensus 175 ~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~-LYIvs---EpNlfy~f 247 (248)
T PF06977_consen 175 GLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGN-LYIVS---EPNLFYRF 247 (248)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT---EEEEE---TTTEEEEE
T ss_pred ceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCC-EEEEc---CCceEEEe
Confidence 9999985 55667777888999999 5777665553221 2467899999986 77766 45555544
No 339
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=7.3e-05 Score=71.48 Aligned_cols=201 Identities=15% Similarity=0.117 Sum_probs=135.6
Q ss_pred CCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCC---eeeEEecCCCccEEEEEee--CCEEEEEeC-CCcEEEEECCC
Q 014934 206 GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRC---KRVRTMEGHRLRVGALAWS--SSLLSSGSR-DKSILQRDIRA 279 (415)
Q Consensus 206 ~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~---~~~~~l~~h~~~V~~l~~~--~~~l~sgs~-dg~I~iwd~~~ 279 (415)
-|.+.|+.+.-. ..+++.+++.||.++.|--..- +.+..+..|.+.|.+++.+ +-.+.+++. |..++++|+.+
T Consensus 7 mhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 7 MHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred cccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec
Confidence 466777766443 5678999999999999985431 3344456788888877776 566777677 99999999987
Q ss_pred CCcc-EEEeccccCCeEEEEEeCC-C-CEEEE-EeCCCcEEEEECCCC--ceeEEeccCCCcEEEEEEcCCCCcEEEEEc
Q 014934 280 QEDF-VSKLSGHKSEVCGLKWSYD-N-RELAS-GGNDNRLFVWNQHST--QPVLKYCEHTAAVKAIAWSPHLHGLLASGG 353 (415)
Q Consensus 280 ~~~~-~~~~~~h~~~V~~l~~spd-g-~~las-g~~dg~I~iwd~~~~--~~~~~~~~h~~~V~~l~~sp~~~~llasgg 353 (415)
-... ...+.--.+.++.+ .++. . ..+|+ .-.++.+.|+|-... +....-.-|..+|..+.+.+.+. .+++..
T Consensus 86 ~DminmiKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~D-s~vSiD 163 (558)
T KOG0882|consen 86 FDMINMIKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGD-SAVSID 163 (558)
T ss_pred cchhhhcccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeecccc-ceeecc
Confidence 6521 11222222223222 1221 1 13443 346789999997654 33344446999999999999987 455543
Q ss_pred CCCCCeEEEEECCC------CcEEEEe----------eCCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCCcc
Q 014934 354 GTADRCIRFWNTTT------NTHLSCM----------DTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSK 413 (415)
Q Consensus 354 g~~d~~I~iwd~~t------~~~~~~~----------~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~~ 413 (415)
..|.|.-|.... .+....+ +..+...++.|+|++..+.+. ..|..|+++.+.+++-
T Consensus 164 --~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl--~~DrkVR~F~~KtGkl 235 (558)
T KOG0882|consen 164 --ISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTL--NPDRKVRGFVFKTGKL 235 (558)
T ss_pred --ccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCccccc--CcccEEEEEEeccchh
Confidence 679999999873 2121122 234567899999999999884 4899999999988764
No 340
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.96 E-value=0.00024 Score=70.56 Aligned_cols=91 Identities=13% Similarity=0.314 Sum_probs=70.8
Q ss_pred EEEEECCCCCe--EEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEecCCCccEEEEEeeC--CEEE
Q 014934 189 VYLWNACSSKV--TKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWSS--SLLS 264 (415)
Q Consensus 189 V~iwd~~~~~~--~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~~--~~l~ 264 (415)
-.+|+...+++ ..+..+.....|.|++++|+.+.|+.|+.||.|.+||...+. ..+....-..+.++|+| .+++
T Consensus 238 ~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~--t~~~ka~~~P~~iaWHp~gai~~ 315 (545)
T PF11768_consen 238 SCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGV--TLLAKAEFIPTLIAWHPDGAIFV 315 (545)
T ss_pred EEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCe--eeeeeecccceEEEEcCCCcEEE
Confidence 45666665544 333444678899999999999999999999999999987663 22333456688999984 6999
Q ss_pred EEeCCCcEEEEECCCCC
Q 014934 265 SGSRDKSILQRDIRAQE 281 (415)
Q Consensus 265 sgs~dg~I~iwd~~~~~ 281 (415)
+|+..|.+.+||+.-..
T Consensus 316 V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 316 VGSEQGELQCFDMALSP 332 (545)
T ss_pred EEcCCceEEEEEeecCc
Confidence 99999999999987544
No 341
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.90 E-value=0.004 Score=63.45 Aligned_cols=194 Identities=12% Similarity=0.117 Sum_probs=115.7
Q ss_pred cEEEEEcCCeEEEEECCCCCeEEeEecCCCC-----CeE--EEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEecCCCc
Q 014934 179 NVLAVGLGNCVYLWNACSSKVTKLCDLGIDD-----SVC--SVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRL 251 (415)
Q Consensus 179 ~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~-----~V~--~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~~ 251 (415)
.+++...++.|+-+|..+|+..-........ .+. .+... ++..+++++.+|.|.-+|.++++.+-.+.....
T Consensus 63 ~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~ 141 (488)
T cd00216 63 DMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNNDQ 141 (488)
T ss_pred EEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCCCC
Confidence 3444446789999999999876655432210 000 11111 226788889999999999999988766653322
Q ss_pred c-----E-EEEEeeCCEEEEEe---------CCCcEEEEECCCCCccEEEeccccC-------------------Ce-EE
Q 014934 252 R-----V-GALAWSSSLLSSGS---------RDKSILQRDIRAQEDFVSKLSGHKS-------------------EV-CG 296 (415)
Q Consensus 252 ~-----V-~~l~~~~~~l~sgs---------~dg~I~iwd~~~~~~~~~~~~~h~~-------------------~V-~~ 296 (415)
. + ......+..++.++ .++.++.+|..+++..-..-..... .| ..
T Consensus 142 ~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~ 221 (488)
T cd00216 142 VPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWAS 221 (488)
T ss_pred cCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCC
Confidence 1 1 12223345666664 3678899999888743222111110 01 12
Q ss_pred EEEeCCCCEEEEEeCCC------------------cEEEEECCCCceeEEeccCCCcEE------EEEEc----CCCC--
Q 014934 297 LKWSYDNRELASGGNDN------------------RLFVWNQHSTQPVLKYCEHTAAVK------AIAWS----PHLH-- 346 (415)
Q Consensus 297 l~~spdg~~lasg~~dg------------------~I~iwd~~~~~~~~~~~~h~~~V~------~l~~s----p~~~-- 346 (415)
..+.+.+..++.++.++ .|.-+|+++++.+.+++.-..... ...+. -++.
T Consensus 222 pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~ 301 (488)
T cd00216 222 PTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPV 301 (488)
T ss_pred eeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCee
Confidence 34455567777777665 799999999999888742111110 01111 1222
Q ss_pred cEEEEEcCCCCCeEEEEECCCCcEEEEee
Q 014934 347 GLLASGGGTADRCIRFWNTTTNTHLSCMD 375 (415)
Q Consensus 347 ~llasggg~~d~~I~iwd~~t~~~~~~~~ 375 (415)
.+++.++ .+|.+...|..+|+.+....
T Consensus 302 ~~V~~g~--~~G~l~ald~~tG~~~W~~~ 328 (488)
T cd00216 302 PAIVHAP--KNGFFYVLDRTTGKLISARP 328 (488)
T ss_pred EEEEEEC--CCceEEEEECCCCcEeeEeE
Confidence 2445544 79999999999999987765
No 342
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.87 E-value=0.009 Score=56.68 Aligned_cols=215 Identities=16% Similarity=0.169 Sum_probs=127.3
Q ss_pred ecCC-Cc-EEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEecCC-
Q 014934 174 DWSS-HN-VLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGH- 249 (415)
Q Consensus 174 ~ws~-~~-~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h- 249 (415)
.|.+ .+ ++.+. .++.|.-|+..+++..... ..+.+.++.....+..|++ +..| +.+++.+++..+..+..-
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~---~p~~~~~~~~~d~~g~Lv~-~~~g-~~~~~~~~~~~~t~~~~~~ 105 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKRVFP---SPGGFSSGALIDAGGRLIA-CEHG-VRLLDPDTGGKITLLAEPE 105 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceEEEE---CCCCcccceeecCCCeEEE-Eccc-cEEEeccCCceeEEecccc
Confidence 4777 44 44444 5789999999877654433 3455566665555555554 3443 667777666553333211
Q ss_pred ----CccEEEEEeeC-CEEEEEeCC------------CcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCC
Q 014934 250 ----RLRVGALAWSS-SLLSSGSRD------------KSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGND 312 (415)
Q Consensus 250 ----~~~V~~l~~~~-~~l~sgs~d------------g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~d 312 (415)
..+.+.+...+ ..+..+... |.++.+|. .+. ....+..+-..-++|+||||++.|..+...
T Consensus 106 ~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~-~~~l~~~~~~~~NGla~SpDg~tly~aDT~ 183 (307)
T COG3386 106 DGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGG-VVRLLDDDLTIPNGLAFSPDGKTLYVADTP 183 (307)
T ss_pred CCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCC-EEEeecCcEEecCceEECCCCCEEEEEeCC
Confidence 12333333332 233333322 33444443 222 355555555667889999999888777654
Q ss_pred -CcEEEEECCC--C-----ceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCC-CeEEEEECCCCcEEEEeeCC-CCEEE
Q 014934 313 -NRLFVWNQHS--T-----QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTAD-RCIRFWNTTTNTHLSCMDTG-SQVCN 382 (415)
Q Consensus 313 -g~I~iwd~~~--~-----~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d-~~I~iwd~~t~~~~~~~~~~-~~V~~ 382 (415)
+.|+-|++.. + .....+..+.+..-.++...+|. +.+++. .. +.|.+|+.. |+.+..+... ..+++
T Consensus 184 ~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~-lw~~a~--~~g~~v~~~~pd-G~l~~~i~lP~~~~t~ 259 (307)
T COG3386 184 ANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGN-LWVAAV--WGGGRVVRFNPD-GKLLGEIKLPVKRPTN 259 (307)
T ss_pred CCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCC-EEEecc--cCCceEEEECCC-CcEEEEEECCCCCCcc
Confidence 7888888752 1 11222323445566677777776 554332 23 389999998 9999999866 77888
Q ss_pred EEEC-CCCCeEEEEEecC
Q 014934 383 LVWS-KNVNELVSTHGYS 399 (415)
Q Consensus 383 l~~s-~~~~~l~s~~g~~ 399 (415)
++|- ++.+.|.+++...
T Consensus 260 ~~FgG~~~~~L~iTs~~~ 277 (307)
T COG3386 260 PAFGGPDLNTLYITSARS 277 (307)
T ss_pred ceEeCCCcCEEEEEecCC
Confidence 8885 4567777664444
No 343
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.87 E-value=0.005 Score=55.45 Aligned_cols=131 Identities=12% Similarity=0.109 Sum_probs=88.9
Q ss_pred CCeEEEEECCCcEEEEECCCCeeeEEecCCCccEEEEEe-eCCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEE
Q 014934 220 NTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAW-SSSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLK 298 (415)
Q Consensus 220 g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~ 298 (415)
..++++|+..+.+.-.|.++++.+-.-. -..++.+-+. -+++++.|...|.+++.++.++.+. ..+..-..-=....
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tGs~~-w~f~~~~~vk~~a~ 100 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIVVGDFVVLGCYSGGLYFLCVKTGSQI-WNFVILETVKVRAQ 100 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEEECCEEEEEEccCcEEEEEecchhhe-eeeeehhhhccceE
Confidence 4577888888888888988887653322 2233433333 3889999999999999999999743 33332221112334
Q ss_pred EeCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEE
Q 014934 299 WSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASG 352 (415)
Q Consensus 299 ~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasg 352 (415)
..+++.++..|+.|+..+..|.++...+.+.+...+...+-+..|....|+++.
T Consensus 101 ~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~ 154 (354)
T KOG4649|consen 101 CDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAI 154 (354)
T ss_pred EcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEe
Confidence 578999999999999999999999999988754443334445566333355443
No 344
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.87 E-value=0.00095 Score=70.25 Aligned_cols=133 Identities=17% Similarity=0.160 Sum_probs=95.3
Q ss_pred CCeEEEEECCCCCeEEeEecCCCCCeEEEEEcC-----CCCeEEEEECCCcEEEEECCCC--eeeEE-ec--CCCccEEE
Q 014934 186 GNCVYLWNACSSKVTKLCDLGIDDSVCSVGWAN-----RNTHLAVGTSHGKVQIWDASRC--KRVRT-ME--GHRLRVGA 255 (415)
Q Consensus 186 d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp-----~g~~la~g~~dg~V~iwd~~~~--~~~~~-l~--~h~~~V~~ 255 (415)
.+.||-.|+..|+++....+.....|..++=.. +...-++|-.+..+..||.+-. +.+.. .. .......|
T Consensus 503 ~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~ 582 (794)
T PF08553_consen 503 PNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSC 582 (794)
T ss_pred CCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCceE
Confidence 468999999999999999865544455554321 1335567888899999998753 23321 11 23445777
Q ss_pred EEee-CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEEC
Q 014934 256 LAWS-SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQ 320 (415)
Q Consensus 256 l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~ 320 (415)
++-. ..+|++|+.+|.|++||-- +......+.+-..+|.+|..+.||++++..+ +..|.+++.
T Consensus 583 ~aTt~~G~iavgs~~G~IRLyd~~-g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 583 FATTEDGYIAVGSNKGDIRLYDRL-GKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred EEecCCceEEEEeCCCcEEeeccc-chhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 7776 5799999999999999943 3334455667789999999999999977655 456777775
No 345
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.85 E-value=0.022 Score=53.14 Aligned_cols=216 Identities=17% Similarity=0.163 Sum_probs=125.8
Q ss_pred CcEEEEEcCCeEEEEEC-CCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEE-----------
Q 014934 178 HNVLAVGLGNCVYLWNA-CSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRT----------- 245 (415)
Q Consensus 178 ~~~la~~~d~~V~iwd~-~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~----------- 245 (415)
++.|++|.++.|++++. ......+... ...|..+...++-+.|++- .||.+.++++........
T Consensus 7 ~~~L~vGt~~Gl~~~~~~~~~~~~~i~~---~~~I~ql~vl~~~~~llvL-sd~~l~~~~L~~l~~~~~~~~~~~~~~~~ 82 (275)
T PF00780_consen 7 GDRLLVGTEDGLYVYDLSDPSKPTRILK---LSSITQLSVLPELNLLLVL-SDGQLYVYDLDSLEPVSTSAPLAFPKSRS 82 (275)
T ss_pred CCEEEEEECCCEEEEEecCCccceeEee---cceEEEEEEecccCEEEEE-cCCccEEEEchhhcccccccccccccccc
Confidence 46677776655999998 3344444443 3449999999987776664 459999999865433221
Q ss_pred ---ecCCCccEEEEE----eeCCEEEEEeCCCcEEEEECCCCC----ccEEEeccccCCeEEEEEeCCCCEEEEEeCCCc
Q 014934 246 ---MEGHRLRVGALA----WSSSLLSSGSRDKSILQRDIRAQE----DFVSKLSGHKSEVCGLKWSYDNRELASGGNDNR 314 (415)
Q Consensus 246 ---l~~h~~~V~~l~----~~~~~l~sgs~dg~I~iwd~~~~~----~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~ 314 (415)
-......+...+ ..+...++....+.|.+|...... .....+. -...+.+++|. ++.|+.|..++
T Consensus 83 ~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~~~- 158 (275)
T PF00780_consen 83 LPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGTSKG- 158 (275)
T ss_pred ccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEeCCc-
Confidence 011223344444 113344444455588888776532 1233333 34678899998 66777777555
Q ss_pred EEEEECCCCceeEEeccC------------CCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEE--EeeCCCCE
Q 014934 315 LFVWNQHSTQPVLKYCEH------------TAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLS--CMDTGSQV 380 (415)
Q Consensus 315 I~iwd~~~~~~~~~~~~h------------~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~--~~~~~~~V 380 (415)
..+.|+.++....-+... ..++..+... ++. +|++ .|..-.+.|. .|+... .+.-....
T Consensus 159 f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e-~Ll~----~~~~g~fv~~-~G~~~r~~~i~W~~~p 231 (275)
T PF00780_consen 159 FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNE-FLLC----YDNIGVFVNK-NGEPSRKSTIQWSSAP 231 (275)
T ss_pred eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-Cce-EEEE----ecceEEEEcC-CCCcCcccEEEcCCch
Confidence 888899877554333211 1223333333 344 4443 3455555555 444333 44444556
Q ss_pred EEEEECCCCCeEEEEEecCCCcEEEEECCCCcc
Q 014934 381 CNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSK 413 (415)
Q Consensus 381 ~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~~ 413 (415)
.++++ ...+|++. .++.|.||++.+++.
T Consensus 232 ~~~~~--~~pyli~~---~~~~iEV~~~~~~~l 259 (275)
T PF00780_consen 232 QSVAY--SSPYLIAF---SSNSIEVRSLETGEL 259 (275)
T ss_pred hEEEE--ECCEEEEE---CCCEEEEEECcCCcE
Confidence 66666 34577763 356799999998753
No 346
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.82 E-value=0.0059 Score=60.07 Aligned_cols=185 Identities=13% Similarity=0.125 Sum_probs=105.3
Q ss_pred CCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEe--cC------CCccEEEEEee-----C-----CEEEEEeCC
Q 014934 208 DDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTM--EG------HRLRVGALAWS-----S-----SLLSSGSRD 269 (415)
Q Consensus 208 ~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l--~~------h~~~V~~l~~~-----~-----~~l~sgs~d 269 (415)
.+.|++++.| |=-++|+|..+|.+.|.|++....+..- .. ....|+++.|. + -.|++|...
T Consensus 86 ~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~ 164 (395)
T PF08596_consen 86 QGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNS 164 (395)
T ss_dssp S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETT
T ss_pred CCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCC
Confidence 5789999987 4458999999999999999877666542 22 34568889886 1 278999999
Q ss_pred CcEEEEECCC-C-Ccc----EEEeccccCCeEEEE-EeCCC--------------------CEEEEEeCCCcEEEEECCC
Q 014934 270 KSILQRDIRA-Q-EDF----VSKLSGHKSEVCGLK-WSYDN--------------------RELASGGNDNRLFVWNQHS 322 (415)
Q Consensus 270 g~I~iwd~~~-~-~~~----~~~~~~h~~~V~~l~-~spdg--------------------~~lasg~~dg~I~iwd~~~ 322 (415)
|.+.+|.+.- . ... ......+...|..+. ++.+. ..++....+..++|+...+
T Consensus 165 G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~ 244 (395)
T PF08596_consen 165 GNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPK 244 (395)
T ss_dssp SEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT-
T ss_pred CCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCC
Confidence 9999998752 1 111 112224556666554 32220 1234444567899999988
Q ss_pred CceeEEeccCCCcEEEEEEcC----CCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCC-----CEEEEEECCCCCeEE
Q 014934 323 TQPVLKYCEHTAAVKAIAWSP----HLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGS-----QVCNLVWSKNVNELV 393 (415)
Q Consensus 323 ~~~~~~~~~h~~~V~~l~~sp----~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~-----~V~~l~~s~~~~~l~ 393 (415)
.+..++..........+.+-+ .+...|++-- .+|.|+++.+..-+.+..+.... .+....++++|+.++
T Consensus 245 ~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~--~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~~ 322 (395)
T PF08596_consen 245 SKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLF--NNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGDIFY 322 (395)
T ss_dssp --EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEE--TTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-EEE
T ss_pred CcccceeeccccccceEEEEeecccCCceEEEEEE--CCCcEEEEECCCchHhhcccCCCccccccccccEECCCCCEEE
Confidence 887776653333344455532 1233455444 69999999999988888776432 234567789998776
Q ss_pred EE
Q 014934 394 ST 395 (415)
Q Consensus 394 s~ 395 (415)
.+
T Consensus 323 ~~ 324 (395)
T PF08596_consen 323 WT 324 (395)
T ss_dssp E-
T ss_pred Ee
Confidence 64
No 347
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.81 E-value=0.043 Score=54.60 Aligned_cols=257 Identities=14% Similarity=0.058 Sum_probs=143.4
Q ss_pred CceeccCCCCCCCc-c--eeEeecCC-CcEEEEEc--CC----eEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEE
Q 014934 155 PYKILDAPALQDDF-Y--LNLVDWSS-HNVLAVGL--GN----CVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLA 224 (415)
Q Consensus 155 p~~~ld~~~l~~~~-~--i~~l~ws~-~~~la~~~--d~----~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la 224 (415)
...+||...+..+. + +....+|| ++.||.+. +| .|+++|+.+++...-.. .. .....+.|.++++.|+
T Consensus 108 ~evllD~n~l~~~~~~~~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i-~~-~~~~~~~W~~d~~~~~ 185 (414)
T PF02897_consen 108 EEVLLDPNELAKDGGYVSLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGI-EN-PKFSSVSWSDDGKGFF 185 (414)
T ss_dssp -EEEEEGGGGSTTSS-EEEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEE-EE-EESEEEEECTTSSEEE
T ss_pred eEEEEcchHhhccCceEEeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcc-cc-cccceEEEeCCCCEEE
Confidence 36677877777666 3 34578888 88888873 23 59999999997654321 11 1223499999998776
Q ss_pred EEECCC-----------cEEEEECCCCee--eEEecCCCcc--EEEEEee--CCEEEEEe-CC---CcEEEEECCCC---
Q 014934 225 VGTSHG-----------KVQIWDASRCKR--VRTMEGHRLR--VGALAWS--SSLLSSGS-RD---KSILQRDIRAQ--- 280 (415)
Q Consensus 225 ~g~~dg-----------~V~iwd~~~~~~--~~~l~~h~~~--V~~l~~~--~~~l~sgs-~d---g~I~iwd~~~~--- 280 (415)
....+. .|..|.+.+... ...+...... ...+..+ +++|+..+ .. ..+++.|+...
T Consensus 186 y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~ 265 (414)
T PF02897_consen 186 YTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSP 265 (414)
T ss_dssp EEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTS
T ss_pred EEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCC
Confidence 665433 278888876532 2445443332 4556665 45555433 22 34788888874
Q ss_pred CccEEEeccccCCeEEEEEeCCCCEEEEEe---CCCcEEEEECCCCce---eEEeccCCCcEEEEEEcCCCCcEEEEEcC
Q 014934 281 EDFVSKLSGHKSEVCGLKWSYDNRELASGG---NDNRLFVWNQHSTQP---VLKYCEHTAAVKAIAWSPHLHGLLASGGG 354 (415)
Q Consensus 281 ~~~~~~~~~h~~~V~~l~~spdg~~lasg~---~dg~I~iwd~~~~~~---~~~~~~h~~~V~~l~~sp~~~~llasggg 354 (415)
......+......+....-+..+.+++... ..+.|...++.+... ...+-.|...+.-..+...+.+|++..--
T Consensus 266 ~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~ 345 (414)
T PF02897_consen 266 DAKPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRE 345 (414)
T ss_dssp S-SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEE
T ss_pred cCCcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEE
Confidence 222344443333443333233444444332 345788888887653 22454666644433444445567776541
Q ss_pred CCCCeEEEEECCCCcEEEEee--CCCCEEEEEECCCCCeEEEEEecC--CCcEEEEECCCCcc
Q 014934 355 TADRCIRFWNTTTNTHLSCMD--TGSQVCNLVWSKNVNELVSTHGYS--QNQIIVWRYPTMSK 413 (415)
Q Consensus 355 ~~d~~I~iwd~~t~~~~~~~~--~~~~V~~l~~s~~~~~l~s~~g~~--dg~I~vw~~~s~~~ 413 (415)
.....|+++++..+.....+. ..+.|..+...++++.+.....+. -+.+..||+.+++.
T Consensus 346 ~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 346 NGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL 408 (414)
T ss_dssp TTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred CCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence 124568999998455544444 334467777777777766543322 35788888887764
No 348
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.80 E-value=0.022 Score=56.05 Aligned_cols=215 Identities=14% Similarity=0.134 Sum_probs=147.7
Q ss_pred cceeEeecCC-Cc-EEEEEc-CCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEEC---CCcEEEEECCCCe
Q 014934 168 FYLNLVDWSS-HN-VLAVGL-GNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTS---HGKVQIWDASRCK 241 (415)
Q Consensus 168 ~~i~~l~ws~-~~-~la~~~-d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~---dg~V~iwd~~~~~ 241 (415)
++-+.++.++ ++ +.+... .+.|.+.|..+.........+. ....++++++++.+.++.. ++.|.+.|..+.+
T Consensus 74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~ 151 (381)
T COG3391 74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNK 151 (381)
T ss_pred ccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCe
Confidence 4555666666 44 444443 5889999988887777765553 7789999999988877765 6889999999988
Q ss_pred eeEEecCCCccEEEEEee--CCEEEE-EeCCCcEEEEECCCCCccEEE----eccccCCeEEEEEeCCCCEEEEEeCC--
Q 014934 242 RVRTMEGHRLRVGALAWS--SSLLSS-GSRDKSILQRDIRAQEDFVSK----LSGHKSEVCGLKWSYDNRELASGGND-- 312 (415)
Q Consensus 242 ~~~~l~~h~~~V~~l~~~--~~~l~s-gs~dg~I~iwd~~~~~~~~~~----~~~h~~~V~~l~~spdg~~lasg~~d-- 312 (415)
.+.....-..+ ..+++. +..++. -..++.|.+.|..... .... ...-...-+.+.++|+|..+.+....
T Consensus 152 ~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~-v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~ 229 (381)
T COG3391 152 VTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNS-VVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSG 229 (381)
T ss_pred EEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcc-eeccccccccccCCCCceEEECCCCCEEEEEeccCC
Confidence 88775543334 677777 454444 4578899999976554 2210 11222345779999999976654433
Q ss_pred -CcEEEEECCCCceeEEeccCCC-cEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCCC----EEEEEEC
Q 014934 313 -NRLFVWNQHSTQPVLKYCEHTA-AVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQ----VCNLVWS 386 (415)
Q Consensus 313 -g~I~iwd~~~~~~~~~~~~h~~-~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~~----V~~l~~s 386 (415)
+.+.+.|..++.....-..-.. ....++.+|+|..+.+.-. ..+.+.+-|..+......+..+.. +..+++.
T Consensus 230 ~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~--~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~ 307 (381)
T COG3391 230 SNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANS--QGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAIS 307 (381)
T ss_pred CceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEec--CCCeEEEEeCCCCceeeeecccccccccceeccce
Confidence 5899999988866554111111 4567899999998887765 578899999999888777654433 5555554
Q ss_pred CC
Q 014934 387 KN 388 (415)
Q Consensus 387 ~~ 388 (415)
+.
T Consensus 308 ~~ 309 (381)
T COG3391 308 PL 309 (381)
T ss_pred ee
Confidence 43
No 349
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.80 E-value=0.0023 Score=61.50 Aligned_cols=141 Identities=15% Similarity=0.216 Sum_probs=95.6
Q ss_pred CcEEEEEcC-----------CeEEEEECCCC-----CeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCe
Q 014934 178 HNVLAVGLG-----------NCVYLWNACSS-----KVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCK 241 (415)
Q Consensus 178 ~~~la~~~d-----------~~V~iwd~~~~-----~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~ 241 (415)
..+|++|.. |.|+++++... ++..+......+.|++++-. +| +|++|. .+.|.+|++...+
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~ 118 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSK 118 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTS
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcc
Confidence 467777732 77999999884 44444444557899999877 44 455544 4689999997766
Q ss_pred -eeEEec-CCCccEEEEEeeCCEEEEEeCCCcEEEEECCCCCccEEEec--cccCCeEEEEEeCCCCEEEEEeCCCcEEE
Q 014934 242 -RVRTME-GHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLS--GHKSEVCGLKWSYDNRELASGGNDNRLFV 317 (415)
Q Consensus 242 -~~~~l~-~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~--~h~~~V~~l~~spdg~~lasg~~dg~I~i 317 (415)
....-. .....+.++...+++++.|...+.+.++..+.....+..+. .....+.++.+-++++.++.+..+|.|.+
T Consensus 119 ~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~ 198 (321)
T PF03178_consen 119 TLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFV 198 (321)
T ss_dssp SEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEE
T ss_pred cchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEE
Confidence 333222 23347888888899999999999888875554332222222 23445888888867789999999999999
Q ss_pred EECC
Q 014934 318 WNQH 321 (415)
Q Consensus 318 wd~~ 321 (415)
+...
T Consensus 199 l~~~ 202 (321)
T PF03178_consen 199 LRYN 202 (321)
T ss_dssp EEE-
T ss_pred EEEC
Confidence 8865
No 350
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.73 E-value=0.0014 Score=65.38 Aligned_cols=162 Identities=12% Similarity=0.113 Sum_probs=90.9
Q ss_pred CCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEecCCCccEEEEEee-CCEEEEEeCCCcEEEE-ECCCCCccEE
Q 014934 208 DDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWS-SSLLSSGSRDKSILQR-DIRAQEDFVS 285 (415)
Q Consensus 208 ~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~-~~~l~sgs~dg~I~iw-d~~~~~~~~~ 285 (415)
......+.++|+|+++++ +.+|.-.|+.....+... .+.....+|. .+.+++-...+.|.++ ++.... ..
T Consensus 32 ~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~-----~G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~~~--~k 103 (443)
T PF04053_consen 32 EIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKA-----FGSGLSFVWSSRNRYAVLESSSTIKIYKNFKNEV--VK 103 (443)
T ss_dssp SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEE-----EEE-SEEEE-TSSEEEEE-TTS-EEEEETTEE-T--T-
T ss_pred CcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCcccc-----cCceeEEEEecCccEEEEECCCeEEEEEcCcccc--ce
Confidence 345789999999999998 567888888855444332 2334557777 4778888888999996 443222 11
Q ss_pred EeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEEC
Q 014934 286 KLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNT 365 (415)
Q Consensus 286 ~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~ 365 (415)
.+.. ...+..|-. |.+|+..+.+ .|.+||+.+++.+.++... +|..+.|++++..+.+.+ +..+.+++.
T Consensus 104 ~i~~-~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t----~~~i~il~~ 172 (443)
T PF04053_consen 104 SIKL-PFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVT----KDSIYILKY 172 (443)
T ss_dssp -----SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-----S-SEEEEEE
T ss_pred EEcC-CcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEe----CCeEEEEEe
Confidence 2221 112333332 8888887665 7999999999999998532 499999999988444443 567777765
Q ss_pred CCC-----------cEEEEeeC-CCCEEEEEECCC
Q 014934 366 TTN-----------THLSCMDT-GSQVCNLVWSKN 388 (415)
Q Consensus 366 ~t~-----------~~~~~~~~-~~~V~~l~~s~~ 388 (415)
... ..+..+.. ...|.+..|..+
T Consensus 173 ~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d 207 (443)
T PF04053_consen 173 NLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED 207 (443)
T ss_dssp -HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT
T ss_pred cchhcccccccCchhceEEEEEecceeEEEEEEcC
Confidence 433 12333332 566777777665
No 351
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.68 E-value=0.026 Score=51.78 Aligned_cols=193 Identities=12% Similarity=0.087 Sum_probs=124.1
Q ss_pred ceeccCCCCCCCcceeEeecCC-CcEEEEE-cC--CeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCc
Q 014934 156 YKILDAPALQDDFYLNLVDWSS-HNVLAVG-LG--NCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGK 231 (415)
Q Consensus 156 ~~~ld~~~l~~~~~i~~l~ws~-~~~la~~-~d--~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~ 231 (415)
++++..-......+...+.+.. +.++-+. .- ..|+.+|..+++......+...----.++.. +++.....-.+|.
T Consensus 33 ~~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~ 111 (264)
T PF05096_consen 33 YEVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGT 111 (264)
T ss_dssp EEEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSE
T ss_pred eEEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCe
Confidence 3555443334456777888844 4443333 22 4799999999999888877554333444444 2333444457899
Q ss_pred EEEEECCCCeeeEEecCCCccEEEEEeeCCEEEEEeCCCcEEEEECCCCCccEEEeccc-----cCCeEEEEEeCCCCEE
Q 014934 232 VQIWDASRCKRVRTMEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLSGH-----KSEVCGLKWSYDNREL 306 (415)
Q Consensus 232 V~iwd~~~~~~~~~l~~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h-----~~~V~~l~~spdg~~l 306 (415)
..+||..+.+.+.++. ..+.-+.++.++..|+.......|+++|..+.+ ....+... -..++-|.|- +|...
T Consensus 112 ~f~yd~~tl~~~~~~~-y~~EGWGLt~dg~~Li~SDGS~~L~~~dP~~f~-~~~~i~V~~~g~pv~~LNELE~i-~G~Iy 188 (264)
T PF05096_consen 112 GFVYDPNTLKKIGTFP-YPGEGWGLTSDGKRLIMSDGSSRLYFLDPETFK-EVRTIQVTDNGRPVSNLNELEYI-NGKIY 188 (264)
T ss_dssp EEEEETTTTEEEEEEE--SSS--EEEECSSCEEEE-SSSEEEEE-TTT-S-EEEEEE-EETTEE---EEEEEEE-TTEEE
T ss_pred EEEEccccceEEEEEe-cCCcceEEEcCCCEEEEECCccceEEECCcccc-eEEEEEEEECCEECCCcEeEEEE-cCEEE
Confidence 9999999999998886 346778888888888888888889999988765 23333321 1245667776 67777
Q ss_pred EEEeCCCcEEEEECCCCceeEEecc------------C---CCcEEEEEEcCCCCcEEEEE
Q 014934 307 ASGGNDNRLFVWNQHSTQPVLKYCE------------H---TAAVKAIAWSPHLHGLLASG 352 (415)
Q Consensus 307 asg~~dg~I~iwd~~~~~~~~~~~~------------h---~~~V~~l~~sp~~~~llasg 352 (415)
|=.=....|...|..+|+.+..+.- + ..-.+.|||.|....++++|
T Consensus 189 ANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 189 ANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 7777778899999999988776521 1 23468999999999899988
No 352
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.68 E-value=0.0007 Score=68.43 Aligned_cols=143 Identities=17% Similarity=0.187 Sum_probs=97.0
Q ss_pred CCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEec-CCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccE
Q 014934 208 DDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTME-GHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFV 284 (415)
Q Consensus 208 ~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~-~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~ 284 (415)
...|.--+++..+++++.|+..|.|.+|+-..++....-. +-.+.+..+..+ ..+++.|+..|.|.++-+.......
T Consensus 33 ~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~ 112 (726)
T KOG3621|consen 33 PARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRD 112 (726)
T ss_pred cceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCc
Confidence 3445555667789999999999999999987665433222 223333444444 4678888899999999877643221
Q ss_pred EEe-----ccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCC----ceeEEeccCCCcEEEEEEcCCCCcEEEEE
Q 014934 285 SKL-----SGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHST----QPVLKYCEHTAAVKAIAWSPHLHGLLASG 352 (415)
Q Consensus 285 ~~~-----~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~----~~~~~~~~h~~~V~~l~~sp~~~~llasg 352 (415)
..+ ..|+..|++++|++++..|.+|...|+|..-.+.+. -..+.+..-...|..|... +.+||++.
T Consensus 113 ~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~--q~~LLVSt 187 (726)
T KOG3621|consen 113 LDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL--QSYLLVST 187 (726)
T ss_pred ceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc--cceehHhh
Confidence 111 247788999999999999999999999998888762 1222333345567666655 33566654
No 353
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.67 E-value=0.046 Score=53.80 Aligned_cols=216 Identities=15% Similarity=0.151 Sum_probs=139.2
Q ss_pred EEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEEC-CCcEEEEECCCCeeeEEecCCCccEEEEEee--C-CEEE
Q 014934 189 VYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTS-HGKVQIWDASRCKRVRTMEGHRLRVGALAWS--S-SLLS 264 (415)
Q Consensus 189 V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~-dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~--~-~~l~ 264 (415)
+.+++..+........++ .....+...++|..+.+... ...+...+................-..++.+ + +..+
T Consensus 13 ~~v~~~~~~~~~~~~~~~--~~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv 90 (381)
T COG3391 13 VSVINTGTNKVTAAISLG--RGPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYV 90 (381)
T ss_pred eEEEeecccEEEEEeecC--CCCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEE
Confidence 667776666665555432 36778888888865554432 2245555544222111111111223344554 3 3566
Q ss_pred EEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeC---CCcEEEEECCCCceeEEeccCCCcEEEEEE
Q 014934 265 SGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGN---DNRLFVWNQHSTQPVLKYCEHTAAVKAIAW 341 (415)
Q Consensus 265 sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~---dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~ 341 (415)
....++.|.+.|............+. ....++++|+++.+.++.. ++.+.+.|..+.+.+.....-..+ ..+++
T Consensus 91 ~~~~~~~v~vid~~~~~~~~~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~ 167 (381)
T COG3391 91 TTGDSNTVSVIDTATNTVLGSIPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAV 167 (381)
T ss_pred ecCCCCeEEEEcCcccceeeEeeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEE
Confidence 66667899999977665322222232 6678999999988776554 789999999988887775433334 88999
Q ss_pred cCCCCcEEEEEcCCCCCeEEEEECCCCcEEE-----EeeCCCCEEEEEECCCCCeEEEEEecC-CCcEEEEECCCC
Q 014934 342 SPHLHGLLASGGGTADRCIRFWNTTTNTHLS-----CMDTGSQVCNLVWSKNVNELVSTHGYS-QNQIIVWRYPTM 411 (415)
Q Consensus 342 sp~~~~llasggg~~d~~I~iwd~~t~~~~~-----~~~~~~~V~~l~~s~~~~~l~s~~g~~-dg~I~vw~~~s~ 411 (415)
.|+|..++++.. .++.|.+.|..+..... .+..+..-..+.++++|.++.++-..+ ++.+.+.|..+.
T Consensus 168 ~p~g~~vyv~~~--~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~ 241 (381)
T COG3391 168 DPDGNKVYVTNS--DDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATG 241 (381)
T ss_pred CCCCCeEEEEec--CCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCc
Confidence 999998888775 79999999987766553 233445567899999999776653222 257777777654
No 354
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.63 E-value=0.0043 Score=48.86 Aligned_cols=101 Identities=22% Similarity=0.261 Sum_probs=71.9
Q ss_pred eEEEEEeC---CC-CEEEEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCc
Q 014934 294 VCGLKWSY---DN-RELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNT 369 (415)
Q Consensus 294 V~~l~~sp---dg-~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~ 369 (415)
|++|++.. || +.|++|+.|..|+||+-. ..+.++.. ...|..++-...+. ++.+- .+|+|-+|+- ..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e-~~~v~~L~~~~~~~--F~Y~l--~NGTVGvY~~--~~ 72 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITE-TDKVTSLCSLGGGR--FAYAL--ANGTVGVYDR--SQ 72 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEec-ccceEEEEEcCCCE--EEEEe--cCCEEEEEeC--cc
Confidence 56666654 32 579999999999999854 56777744 55788887776654 44433 6899999976 45
Q ss_pred EEEEeeCCCCEEEEEECCCC----CeEEEEEecCCCcEEE
Q 014934 370 HLSCMDTGSQVCNLVWSKNV----NELVSTHGYSQNQIIV 405 (415)
Q Consensus 370 ~~~~~~~~~~V~~l~~s~~~----~~l~s~~g~~dg~I~v 405 (415)
.+..++.+.++.++++..-. .+|++ |.++|.|-+
T Consensus 73 RlWRiKSK~~~~~~~~~D~~gdG~~eLI~--GwsnGkve~ 110 (111)
T PF14783_consen 73 RLWRIKSKNQVTSMAFYDINGDGVPELIV--GWSNGKVEV 110 (111)
T ss_pred eeeeeccCCCeEEEEEEcCCCCCceEEEE--EecCCeEEe
Confidence 56777777788887665433 37888 888998754
No 355
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.62 E-value=0.0014 Score=67.40 Aligned_cols=69 Identities=16% Similarity=0.309 Sum_probs=58.8
Q ss_pred ceeEeecCC-CcEEEEEcC-CeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECC
Q 014934 169 YLNLVDWSS-HNVLAVGLG-NCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDAS 238 (415)
Q Consensus 169 ~i~~l~ws~-~~~la~~~d-~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~ 238 (415)
-+.+++|+| .-+|+.|.+ +.+.+|...+.+...+.. .|...|..+.||++|..|.++..-|.|.+|...
T Consensus 61 hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~-th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 61 HATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVE-THPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred ehhhhccChHHHHHhhccccceeEEEecCCceeeeecc-CCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 356789999 667888854 889999988877655554 889999999999999999999999999999875
No 356
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.61 E-value=0.0032 Score=67.39 Aligned_cols=133 Identities=22% Similarity=0.326 Sum_probs=81.9
Q ss_pred EEEEEcCCCCeEEEE-----ECCCcEEEEECCCCeeeEEecCCCccEEEEEeeC--CEEEEE---eCCCcEEEEECCCCC
Q 014934 212 CSVGWANRNTHLAVG-----TSHGKVQIWDASRCKRVRTMEGHRLRVGALAWSS--SLLSSG---SRDKSILQRDIRAQE 281 (415)
Q Consensus 212 ~~v~~sp~g~~la~g-----~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~~--~~l~sg---s~dg~I~iwd~~~~~ 281 (415)
++|.|--||+++|+. .....|++||-+ +..-.+-....+.=.+++|-| ..+++- +.|+.|.++.-..-.
T Consensus 199 ~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~ 277 (1265)
T KOG1920|consen 199 TSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLR 277 (1265)
T ss_pred ceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCcc
Confidence 469999999999993 333689999976 433322222334445788874 555544 345578888754322
Q ss_pred c--cEEEeccccCCeEEEEEeCCCCEEEE---EeCCCcEEEEECCCCceeEE--eccCCCcEEEEEEcCCCCc
Q 014934 282 D--FVSKLSGHKSEVCGLKWSYDNRELAS---GGNDNRLFVWNQHSTQPVLK--YCEHTAAVKAIAWSPHLHG 347 (415)
Q Consensus 282 ~--~~~~~~~h~~~V~~l~~spdg~~las---g~~dg~I~iwd~~~~~~~~~--~~~h~~~V~~l~~sp~~~~ 347 (415)
+ ....+.....+|..++|+.++..||+ ......|.+|-+.+.....+ +.-.+... +.|+|....
T Consensus 278 hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~--~~W~p~~~~ 348 (1265)
T KOG1920|consen 278 HGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKAL--LMWDPVTEK 348 (1265)
T ss_pred ccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEecccccc--ccccCCCce
Confidence 1 12222333445899999999999998 55555699999987643322 11122222 777775443
No 357
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.61 E-value=0.028 Score=50.74 Aligned_cols=140 Identities=11% Similarity=0.065 Sum_probs=89.5
Q ss_pred cEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEecCC--CccEEE
Q 014934 179 NVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGH--RLRVGA 255 (415)
Q Consensus 179 ~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h--~~~V~~ 255 (415)
.++..| ..+.+.-.|..+|++.-...++ ..+-+-+.- -|++++.|+..|.+.+.+..++.....+..- -..-..
T Consensus 24 T~v~igSHs~~~~avd~~sG~~~We~ilg--~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~ 100 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNLIWEAILG--VRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQ 100 (354)
T ss_pred eEEEEecCCceEEEecCCCCcEEeehhhC--ceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceE
Confidence 445555 4577788899998876555444 333332222 5788999999999999999999766555421 111234
Q ss_pred EEeeCCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCC
Q 014934 256 LAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHS 322 (415)
Q Consensus 256 l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~ 322 (415)
+++++..+.+|+.|++.+..|.++.. .+.+.+.....-.+-+..|-...|..+...|.|.--..+.
T Consensus 101 ~d~~~glIycgshd~~~yalD~~~~~-cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~ 166 (354)
T KOG4649|consen 101 CDFDGGLIYCGSHDGNFYALDPKTYG-CVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNP 166 (354)
T ss_pred EcCCCceEEEecCCCcEEEecccccc-eEEecccCCceeccceecCCCceEEEEeccceEEEEccCC
Confidence 56778999999999999999999887 4555554434344445556233333444445444444433
No 358
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.59 E-value=0.053 Score=55.71 Aligned_cols=235 Identities=15% Similarity=0.133 Sum_probs=130.0
Q ss_pred CCcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcC--CCCeEEEEEC------CCcEEEEECCCCeeeEEecC
Q 014934 177 SHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWAN--RNTHLAVGTS------HGKVQIWDASRCKRVRTMEG 248 (415)
Q Consensus 177 ~~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp--~g~~la~g~~------dg~V~iwd~~~~~~~~~l~~ 248 (415)
.+.+++...++.|+-.|..+|+..-.........-..+.-+| .+..++++.. +|.|.-+|.++++.+=.+..
T Consensus 120 ~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~ 199 (527)
T TIGR03075 120 DGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYT 199 (527)
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccC
Confidence 345666667899999999999987655432111101111122 1335556543 68899999999887654432
Q ss_pred CCc-------------------------------cEE-EEEeeC--CEEEEEeCC-----C-----------cEEEEECC
Q 014934 249 HRL-------------------------------RVG-ALAWSS--SLLSSGSRD-----K-----------SILQRDIR 278 (415)
Q Consensus 249 h~~-------------------------------~V~-~l~~~~--~~l~sgs~d-----g-----------~I~iwd~~ 278 (415)
-.. .+. .+++++ ++++.+..+ + .|.-.|++
T Consensus 200 ~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~ 279 (527)
T TIGR03075 200 VPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPD 279 (527)
T ss_pred cCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccc
Confidence 100 011 122332 345554421 2 56777888
Q ss_pred CCCccEEEecc--cc-------CCeEEEEEeCCCC---EEEEEeCCCcEEEEECCCCceeEE--ecc----------CCC
Q 014934 279 AQEDFVSKLSG--HK-------SEVCGLKWSYDNR---ELASGGNDNRLFVWNQHSTQPVLK--YCE----------HTA 334 (415)
Q Consensus 279 ~~~~~~~~~~~--h~-------~~V~~l~~spdg~---~lasg~~dg~I~iwd~~~~~~~~~--~~~----------h~~ 334 (415)
+++. .-.++. |. ....-+.+..+|+ .++.+..+|.+++.|.++++++.. +.. ...
T Consensus 280 TG~~-~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g 358 (527)
T TIGR03075 280 TGKI-KWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTG 358 (527)
T ss_pred cCCE-EEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCCC
Confidence 7763 222222 21 1111122334666 778899999999999999987622 100 000
Q ss_pred -cE----------------------------EEEEEcCCCCcEEEEEcC------------------------------C
Q 014934 335 -AV----------------------------KAIAWSPHLHGLLASGGG------------------------------T 355 (415)
Q Consensus 335 -~V----------------------------~~l~~sp~~~~llasggg------------------------------~ 355 (415)
++ ..++++|....+++-.+- .
T Consensus 359 ~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~ 438 (527)
T TIGR03075 359 RPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDD 438 (527)
T ss_pred CCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCC
Confidence 00 114556654433322210 0
Q ss_pred CCCeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCCccc
Q 014934 356 ADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKV 414 (415)
Q Consensus 356 ~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~~l 414 (415)
.-+.|.-+|+.+|+.+.......+...-...-.+..++. +..+|.++.+|..+++.|
T Consensus 439 ~~g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t~g~lvf~--g~~~G~l~a~D~~TGe~l 495 (527)
T TIGR03075 439 HMGSLIAWDPITGKIVWEHKEDFPLWGGVLATAGDLVFY--GTLEGYFKAFDAKTGEEL 495 (527)
T ss_pred CceeEEEEeCCCCceeeEecCCCCCCCcceEECCcEEEE--ECCCCeEEEEECCCCCEe
Confidence 125688889999988877764433211112224445555 677999999999999875
No 359
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.57 E-value=0.011 Score=57.50 Aligned_cols=205 Identities=15% Similarity=0.198 Sum_probs=116.7
Q ss_pred CCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEec-CC---------------
Q 014934 186 GNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTME-GH--------------- 249 (415)
Q Consensus 186 d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~-~h--------------- 249 (415)
.+.++|||+.+++...+... ...+....|+|+|+.+|... ++.|.+++..++...+.-. +-
T Consensus 22 ~~~y~i~d~~~~~~~~l~~~--~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEE 98 (353)
T PF00930_consen 22 KGDYYIYDIETGEITPLTPP--PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEE 98 (353)
T ss_dssp EEEEEEEETTTTEEEESS-E--ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHH
T ss_pred ceeEEEEecCCCceEECcCC--ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceecccc
Confidence 46799999999887776642 56889999999999999875 5689999987764443211 10
Q ss_pred -CccEEEEEeeC--CEEEEEeCC-C-----------------------------------cEEEEECCCCCccE-EEe--
Q 014934 250 -RLRVGALAWSS--SLLSSGSRD-K-----------------------------------SILQRDIRAQEDFV-SKL-- 287 (415)
Q Consensus 250 -~~~V~~l~~~~--~~l~sgs~d-g-----------------------------------~I~iwd~~~~~~~~-~~~-- 287 (415)
-+.-..+.|+| +.|+....| . .+.++|+.+++... ...
T Consensus 99 v~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~ 178 (353)
T PF00930_consen 99 VFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNS 178 (353)
T ss_dssp TSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HH
T ss_pred ccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccc
Confidence 01123455663 344333211 1 13445665554211 111
Q ss_pred -ccccCCeEEEEEeCCCCEEEEE--eCC---CcEEEEECCCCceeEEecc-CCCcE---EEEEEc-CCCCcEEEEEcCCC
Q 014934 288 -SGHKSEVCGLKWSYDNRELASG--GND---NRLFVWNQHSTQPVLKYCE-HTAAV---KAIAWS-PHLHGLLASGGGTA 356 (415)
Q Consensus 288 -~~h~~~V~~l~~spdg~~lasg--~~d---g~I~iwd~~~~~~~~~~~~-h~~~V---~~l~~s-p~~~~llasggg~~ 356 (415)
..-...+..+.|.++++.|+.. ..+ -.+.+.|..++.....+.. ..+.| ....|. +++..++.... .
T Consensus 179 ~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~--~ 256 (353)
T PF00930_consen 179 LNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISE--R 256 (353)
T ss_dssp HHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEE--T
T ss_pred cCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEE--c
Confidence 1223457889999999844442 222 2477788877654333322 22222 245554 77766666665 4
Q ss_pred CC--eEEEEECCCCcEEEEeeCCCCEEE-EEECCCCCeEEEE
Q 014934 357 DR--CIRFWNTTTNTHLSCMDTGSQVCN-LVWSKNVNELVST 395 (415)
Q Consensus 357 d~--~I~iwd~~t~~~~~~~~~~~~V~~-l~~s~~~~~l~s~ 395 (415)
+| .|.+++...+.........-.|.. +.|+++++.|..+
T Consensus 257 ~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~ 298 (353)
T PF00930_consen 257 DGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFT 298 (353)
T ss_dssp TSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEE
T ss_pred CCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEE
Confidence 55 466667766664433334455755 7889998877665
No 360
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.57 E-value=0.0074 Score=59.97 Aligned_cols=178 Identities=16% Similarity=0.232 Sum_probs=108.7
Q ss_pred eeEeecCC-CcEEEEE---cCC--eEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEE-CCCc--EEEEECCCC
Q 014934 170 LNLVDWSS-HNVLAVG---LGN--CVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGT-SHGK--VQIWDASRC 240 (415)
Q Consensus 170 i~~l~ws~-~~~la~~---~d~--~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~-~dg~--V~iwd~~~~ 240 (415)
+..-.|++ +..++.. ..+ .++++++.+++...+..+ .+.-..-.|+|||++||... .||. |.+.|+...
T Consensus 195 ~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~--~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~ 272 (425)
T COG0823 195 ILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNF--NGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGK 272 (425)
T ss_pred eeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeecc--CCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCC
Confidence 34456887 4433333 233 599999999987777753 34555678999999877764 4665 555566655
Q ss_pred eeeEEecCCCccEEEEEee--CC-EEEEEeCCCc--EEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeC-CCc
Q 014934 241 KRVRTMEGHRLRVGALAWS--SS-LLSSGSRDKS--ILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGN-DNR 314 (415)
Q Consensus 241 ~~~~~l~~h~~~V~~l~~~--~~-~l~sgs~dg~--I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~-dg~ 314 (415)
. ...+....+.-+.=.|+ ++ ++++.++.|. |.++|...... ..+......-..-.|+|||++|+..+. +|.
T Consensus 273 ~-~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~--~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~ 349 (425)
T COG0823 273 N-LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV--TRLTFSGGGNSNPVWSPDGDKIVFESSSGGQ 349 (425)
T ss_pred c-ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce--eEeeccCCCCcCccCCCCCCEEEEEeccCCc
Confidence 5 33344333323344555 44 4555556664 66667766653 333322222237789999999988764 344
Q ss_pred --EEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEc
Q 014934 315 --LFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGG 353 (415)
Q Consensus 315 --I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasgg 353 (415)
|.+.|+.++..+..+ .+......-.|.+++..++.+++
T Consensus 350 ~~i~~~~~~~~~~~~~l-t~~~~~e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 350 WDIDKNDLASGGKIRIL-TSTYLNESPSWAPNGRMIMFSSG 389 (425)
T ss_pred eeeEEeccCCCCcEEEc-cccccCCCCCcCCCCceEEEecc
Confidence 777777766544444 34444556788899987777664
No 361
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.52 E-value=0.09 Score=52.29 Aligned_cols=196 Identities=9% Similarity=0.072 Sum_probs=109.5
Q ss_pred eEEEEEcCCCCeEEEEE-CCC----cEEEEECCCCeeeEEecCCCccEEEEEeeC--CEEEEEeCCC-----------cE
Q 014934 211 VCSVGWANRNTHLAVGT-SHG----KVQIWDASRCKRVRTMEGHRLRVGALAWSS--SLLSSGSRDK-----------SI 272 (415)
Q Consensus 211 V~~v~~sp~g~~la~g~-~dg----~V~iwd~~~~~~~~~l~~h~~~V~~l~~~~--~~l~sgs~dg-----------~I 272 (415)
+..+.++|+|++||.+- ..| .|+++|+.+++.+...-... ....+.|.+ ..|+....+. .|
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-ccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence 33578899999999873 344 49999999997765321111 122389984 4554444332 37
Q ss_pred EEEECCCCCcc-EEEeccccCC--eEEEEEeCCCCEEEEEeC---C-CcEEEEECCCC----ceeEEeccCCCcEEE-EE
Q 014934 273 LQRDIRAQEDF-VSKLSGHKSE--VCGLKWSYDNRELASGGN---D-NRLFVWNQHST----QPVLKYCEHTAAVKA-IA 340 (415)
Q Consensus 273 ~iwd~~~~~~~-~~~~~~h~~~--V~~l~~spdg~~lasg~~---d-g~I~iwd~~~~----~~~~~~~~h~~~V~~-l~ 340 (415)
+.|.+.+.... ...+...... ...+..++|+++|+.... + ..+++.|+..+ .....+......+.. +.
T Consensus 205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~ 284 (414)
T PF02897_consen 205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVD 284 (414)
T ss_dssp EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEE
T ss_pred EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEE
Confidence 88888876543 2334433322 568889999999875332 2 46888898874 233444444444443 43
Q ss_pred EcCCCCcEEEEEcCCCCCeEEEEECCCCcE---E-EEeeCCCCEEEEEECCCCCeEEEEEecCCC--cEEEEECC
Q 014934 341 WSPHLHGLLASGGGTADRCIRFWNTTTNTH---L-SCMDTGSQVCNLVWSKNVNELVSTHGYSQN--QIIVWRYP 409 (415)
Q Consensus 341 ~sp~~~~llasggg~~d~~I~iwd~~t~~~---~-~~~~~~~~V~~l~~s~~~~~l~s~~g~~dg--~I~vw~~~ 409 (415)
.. .+..++.+..+...+.|.-.++..... . ..+.+...+.-..+...+.+|+.. ...++ .|.++++.
T Consensus 285 ~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~-~~~~~~~~l~v~~~~ 357 (414)
T PF02897_consen 285 HH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLS-YRENGSSRLRVYDLD 357 (414)
T ss_dssp EE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEE-EEETTEEEEEEEETT
T ss_pred cc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEE-EEECCccEEEEEECC
Confidence 33 444445554444567888888887652 2 223344433333333445556653 22333 68888877
No 362
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.50 E-value=0.06 Score=53.05 Aligned_cols=80 Identities=11% Similarity=0.072 Sum_probs=51.9
Q ss_pred CCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeC--CCCEEEEEEC----------------CCCCeEE
Q 014934 332 HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDT--GSQVCNLVWS----------------KNVNELV 393 (415)
Q Consensus 332 h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~--~~~V~~l~~s----------------~~~~~l~ 393 (415)
....+.+|+.+|++. +.|+.. .=|.|.++|+.++..+...+. ..++.=+... +....++
T Consensus 306 ~~R~~~~i~~sP~~~-laA~tD--slGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~L 382 (415)
T PF14655_consen 306 SKREGESICLSPSGR-LAAVTD--SLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFL 382 (415)
T ss_pred CCceEEEEEECCCCC-EEEEEc--CCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEE
Confidence 344578899999976 666654 579999999999887766542 1111111111 1112344
Q ss_pred EEEecCCCcEEEEECCCCccc
Q 014934 394 STHGYSQNQIIVWRYPTMSKV 414 (415)
Q Consensus 394 s~~g~~dg~I~vw~~~s~~~l 414 (415)
+.+.-.-|.|.||.+..+.++
T Consensus 383 vIyaprRg~lEvW~~~~g~Rv 403 (415)
T PF14655_consen 383 VIYAPRRGILEVWSMRQGPRV 403 (415)
T ss_pred EEEeccCCeEEEEecCCCCEE
Confidence 445667899999999998775
No 363
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=0.00081 Score=67.19 Aligned_cols=93 Identities=17% Similarity=0.335 Sum_probs=78.9
Q ss_pred cCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCcEE-EEEEcCCCCcEEEEEcCCCCCeEEEEECCCCc
Q 014934 291 KSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVK-AIAWSPHLHGLLASGGGTADRCIRFWNTTTNT 369 (415)
Q Consensus 291 ~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~-~l~~sp~~~~llasggg~~d~~I~iwd~~t~~ 369 (415)
...|.-+.|+|.-.++|.+..+|.|.+..+. .+.+.++.-|...++ +++|.|+|+ ++|.|= .||+|++.|+.+|.
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGk-llaVg~--kdG~I~L~Dve~~~ 95 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGK-LLAVGF--KDGTIRLHDVEKGG 95 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCC-EEEEEe--cCCeEEEEEccCCC
Confidence 3467889999999999999999999999987 777888876777777 999999987 888776 89999999999999
Q ss_pred EEEE--eeCCCCEEEEEECC
Q 014934 370 HLSC--MDTGSQVCNLVWSK 387 (415)
Q Consensus 370 ~~~~--~~~~~~V~~l~~s~ 387 (415)
.+.. +-....|..+.|++
T Consensus 96 ~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 96 RLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred ceeccccccccchheeeccc
Confidence 8877 34566788888863
No 364
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.43 E-value=0.011 Score=61.09 Aligned_cols=215 Identities=14% Similarity=0.133 Sum_probs=121.9
Q ss_pred CeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECC-C-----cEEEEECCCCe--eeEEecCCCccEEEEEe
Q 014934 187 NCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSH-G-----KVQIWDASRCK--RVRTMEGHRLRVGALAW 258 (415)
Q Consensus 187 ~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~d-g-----~V~iwd~~~~~--~~~~l~~h~~~V~~l~~ 258 (415)
..|..||..+++......+.....-.+++.. +|...++|+.+ | .+..||..+.+ .+..+............
T Consensus 301 ~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l 379 (571)
T KOG4441|consen 301 RSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVL 379 (571)
T ss_pred ceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEE
Confidence 4688999999887777766554445555554 56788889888 3 57888887654 33334444445555566
Q ss_pred eCCEEEEEeCCCc-----EEEEECCCCCccEEEeccccCCeEEEEE-eCCCCEEEEEeCCC------cEEEEECCCCcee
Q 014934 259 SSSLLSSGSRDKS-----ILQRDIRAQEDFVSKLSGHKSEVCGLKW-SYDNRELASGGNDN------RLFVWNQHSTQPV 326 (415)
Q Consensus 259 ~~~~l~sgs~dg~-----I~iwd~~~~~~~~~~~~~h~~~V~~l~~-spdg~~lasg~~dg------~I~iwd~~~~~~~ 326 (415)
.+.+.++|+.||. |-.||.++.+- ...........+... .-+|.+.++||.++ .+..||..+.+..
T Consensus 380 ~g~iYavGG~dg~~~l~svE~YDp~~~~W--~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~ 457 (571)
T KOG4441|consen 380 DGKLYAVGGFDGEKSLNSVECYDPVTNKW--TPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWT 457 (571)
T ss_pred CCEEEEEeccccccccccEEEecCCCCcc--cccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCcee
Confidence 6889999999974 77888876651 222212122222222 22688888888654 5778887766432
Q ss_pred E--EeccCCCcEEEEEEcCCCCcEEEEEcCCCCC-----eEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEEEEecC
Q 014934 327 L--KYCEHTAAVKAIAWSPHLHGLLASGGGTADR-----CIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYS 399 (415)
Q Consensus 327 ~--~~~~h~~~V~~l~~sp~~~~llasggg~~d~-----~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~ 399 (415)
. .+..-..... ++.- +..|++.|| .|+ +|..||..+.+-...-.......++.....+..+.+. |+.
T Consensus 458 ~~~~M~~~R~~~g-~a~~--~~~iYvvGG--~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~v-GG~ 531 (571)
T KOG4441|consen 458 LIAPMNTRRSGFG-VAVL--NGKIYVVGG--FDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAV-GGF 531 (571)
T ss_pred ecCCcccccccce-EEEE--CCEEEEECC--ccCCCccceEEEEcCCCCceeEcccCccccccccEEEECCEEEEE-ecc
Confidence 2 2211111111 2222 235888886 454 3777888877654332222233333333333344433 545
Q ss_pred CC-----cEEEEECCC
Q 014934 400 QN-----QIIVWRYPT 410 (415)
Q Consensus 400 dg-----~I~vw~~~s 410 (415)
|| +|..||..+
T Consensus 532 ~~~~~l~~ve~ydp~~ 547 (571)
T KOG4441|consen 532 DGNNNLNTVECYDPET 547 (571)
T ss_pred cCccccceeEEcCCCC
Confidence 54 566665443
No 365
>PHA02713 hypothetical protein; Provisional
Probab=97.39 E-value=0.015 Score=60.09 Aligned_cols=212 Identities=11% Similarity=0.089 Sum_probs=107.9
Q ss_pred eEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECC------CcEEEEECCCCee--eEEecCCCccEEEEEee
Q 014934 188 CVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSH------GKVQIWDASRCKR--VRTMEGHRLRVGALAWS 259 (415)
Q Consensus 188 ~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~d------g~V~iwd~~~~~~--~~~l~~h~~~V~~l~~~ 259 (415)
.+..||..+++...+..+.....-.+++. -++...++|+.+ ..|..||..+..- +..+.............
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~ 351 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINYASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVID 351 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccceEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEEC
Confidence 57789998887766554332211122222 367777888753 3478889876542 22222222334445556
Q ss_pred CCEEEEEeCCC-----cEEEEECCCCCccEEEeccccC---CeEEEEEeCCCCEEEEEeCCC------------------
Q 014934 260 SSLLSSGSRDK-----SILQRDIRAQEDFVSKLSGHKS---EVCGLKWSYDNRELASGGNDN------------------ 313 (415)
Q Consensus 260 ~~~l~sgs~dg-----~I~iwd~~~~~~~~~~~~~h~~---~V~~l~~spdg~~lasg~~dg------------------ 313 (415)
+.+.+.||.++ .+..||..+.. ......... ....+. -+|.+.+.||.++
T Consensus 352 g~IYviGG~~~~~~~~sve~Ydp~~~~--W~~~~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~ 427 (557)
T PHA02713 352 DTIYAIGGQNGTNVERTIECYTMGDDK--WKMLPDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEED 427 (557)
T ss_pred CEEEEECCcCCCCCCceEEEEECCCCe--EEECCCCCcccccccEEE--ECCEEEEEeCCCccccccccccccccccccc
Confidence 77788888764 47889987654 122211111 111222 2678888887653
Q ss_pred -----cEEEEECCCCcee--EEeccCCCcEEEEEEcCCCCcEEEEEcCCC----CCeEEEEECCC-CcEE--EEeeCCCC
Q 014934 314 -----RLFVWNQHSTQPV--LKYCEHTAAVKAIAWSPHLHGLLASGGGTA----DRCIRFWNTTT-NTHL--SCMDTGSQ 379 (415)
Q Consensus 314 -----~I~iwd~~~~~~~--~~~~~h~~~V~~l~~sp~~~~llasggg~~----d~~I~iwd~~t-~~~~--~~~~~~~~ 379 (415)
.+..||..+.+-. ..+.........+++ ++ .+++.||.+. ...+..||..+ .+-. ..+...-.
T Consensus 428 ~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~--~~-~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~ 504 (557)
T PHA02713 428 THSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSH--KD-DIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLS 504 (557)
T ss_pred ccccceEEEECCCCCeEeecCCCCcccccCcEEEE--CC-EEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccc
Confidence 4777887765432 111111111111222 23 4778775211 13467899887 4432 22221111
Q ss_pred EEEEEECCCCCeEEEEEecCCC--cEEEEECCC
Q 014934 380 VCNLVWSKNVNELVSTHGYSQN--QIIVWRYPT 410 (415)
Q Consensus 380 V~~l~~s~~~~~l~s~~g~~dg--~I~vw~~~s 410 (415)
..+++.. +++..++ |+.++ .+..||..+
T Consensus 505 ~~~~~~~-~~~iyv~--Gg~~~~~~~e~yd~~~ 534 (557)
T PHA02713 505 ALHTILH-DNTIMML--HCYESYMLQDTFNVYT 534 (557)
T ss_pred cceeEEE-CCEEEEE--eeecceeehhhcCccc
Confidence 1222222 4454454 55566 566676654
No 366
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.35 E-value=0.0035 Score=61.65 Aligned_cols=138 Identities=14% Similarity=0.124 Sum_probs=97.7
Q ss_pred EEEEECCCcEEEEECCCCeeeEEecCCCccEEEEEeeC---------CEEEEEeCCCcEEEEECCCCCc-cEEEecccc-
Q 014934 223 LAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWSS---------SLLSSGSRDKSILQRDIRAQED-FVSKLSGHK- 291 (415)
Q Consensus 223 la~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~~---------~~l~sgs~dg~I~iwd~~~~~~-~~~~~~~h~- 291 (415)
|..+.....++-.|++.|+.+....-+.. |.-+.+.+ ..-+.|-.|..|.-||.|-... .+...++|.
T Consensus 349 l~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy 427 (644)
T KOG2395|consen 349 LMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQY 427 (644)
T ss_pred eeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccc
Confidence 34455556688889999999998887666 55555542 2345677788899999996653 222333332
Q ss_pred ---CCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECC
Q 014934 292 ---SEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTT 366 (415)
Q Consensus 292 ---~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~ 366 (415)
....|.+-..+ .++|+|+.+|.|++||--..+.-.-+.+-..+|+.|..+.+|.++|+++ +..+.+.++.
T Consensus 428 ~~k~nFsc~aTT~s-G~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc----~tyLlLi~t~ 500 (644)
T KOG2395|consen 428 STKNNFSCFATTES-GYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC----KTYLLLIDTL 500 (644)
T ss_pred ccccccceeeecCC-ceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec----ccEEEEEEEe
Confidence 23455554444 4899999999999999743344445667788999999999999999987 6777777764
No 367
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.33 E-value=0.11 Score=49.38 Aligned_cols=199 Identities=14% Similarity=0.079 Sum_probs=115.8
Q ss_pred eEeecCC-CcEEEEEc---CCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECC-CCeeeEE
Q 014934 171 NLVDWSS-HNVLAVGL---GNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDAS-RCKRVRT 245 (415)
Q Consensus 171 ~~l~ws~-~~~la~~~---d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~-~~~~~~~ 245 (415)
+.+..+. ++++.+.. ..+|-+.|+..+++...+... +++.-.-+. ...+.+-|.||.+.-..+. .|+....
T Consensus 98 ~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P--GC~~iyP~~--~~~F~~lC~DGsl~~v~Ld~~Gk~~~~ 173 (342)
T PF06433_consen 98 NMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP--GCWLIYPSG--NRGFSMLCGDGSLLTVTLDADGKEAQK 173 (342)
T ss_dssp GGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT--SEEEEEEEE--TTEEEEEETTSCEEEEEETSTSSEEEE
T ss_pred cceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC--CEEEEEecC--CCceEEEecCCceEEEEECCCCCEeEe
Confidence 3445555 55555552 357888888888887766532 322222222 2357777899999988886 4444322
Q ss_pred e----cCCCccEE-EEEee--CCEEEEEeCCCcEEEEECCCCCcc-EEEeccc----------cCCeEEEEEeCCCCEEE
Q 014934 246 M----EGHRLRVG-ALAWS--SSLLSSGSRDKSILQRDIRAQEDF-VSKLSGH----------KSEVCGLKWSYDNRELA 307 (415)
Q Consensus 246 l----~~h~~~V~-~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~-~~~~~~h----------~~~V~~l~~spdg~~la 307 (415)
. ..-..++. .-++. +..++--+.+|.|+--|+...... ...+.-- .+.-.-+++++..+.|.
T Consensus 174 ~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rly 253 (342)
T PF06433_consen 174 STKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLY 253 (342)
T ss_dssp EEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEE
T ss_pred eccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEE
Confidence 1 11112221 22222 345666788999998888766521 1111100 12234477777665555
Q ss_pred EEe---CCC-------cEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEE-EEcCCCCCeEEEEECCCCcEEEEeeC
Q 014934 308 SGG---NDN-------RLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLA-SGGGTADRCIRFWNTTTNTHLSCMDT 376 (415)
Q Consensus 308 sg~---~dg-------~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~lla-sggg~~d~~I~iwd~~t~~~~~~~~~ 376 (415)
+.- .++ .|.++|+.+++.+.++.. ...+.+|+.+.+.+-+|. ... .++.|.+||..+|+.+..++.
T Consensus 254 vLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~--~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 254 VLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSA--GDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp EEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEET--TTTEEEEEETTT--EEEEE--
T ss_pred EEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcC--CCCeEEEEeCcCCcEEeehhc
Confidence 421 122 589999999999998853 345778999988775554 443 589999999999999998874
No 368
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.32 E-value=0.00057 Score=41.49 Aligned_cols=37 Identities=30% Similarity=0.609 Sum_probs=32.8
Q ss_pred cEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEE
Q 014934 283 FVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWN 319 (415)
Q Consensus 283 ~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd 319 (415)
....+..|...|.++.|++++.++++++.|+.+++||
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 3456667888999999999999999999999999996
No 369
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.28 E-value=0.2 Score=48.51 Aligned_cols=222 Identities=14% Similarity=0.111 Sum_probs=112.3
Q ss_pred ceeEeecCC-C-cEEEEEc-C--CeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeee
Q 014934 169 YLNLVDWSS-H-NVLAVGL-G--NCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRV 243 (415)
Q Consensus 169 ~i~~l~ws~-~-~~la~~~-d--~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~ 243 (415)
|.+-=+|.+ + .+|.++. + ..+++.|+.+++..++..... +......++++.+.++-......|+-.|+.+.+..
T Consensus 37 YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g-~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~ 115 (386)
T PF14583_consen 37 YFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPG-DNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEER 115 (386)
T ss_dssp -TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS--B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EE
T ss_pred eecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCC-CCccceEEecCCCeEEEEECCCeEEEEECCcCcEE
Confidence 333445666 4 4454442 3 479999999999998887322 33335677888888776666678999999998766
Q ss_pred EEecCCCccEEEEEee---CCEEEEEeC-----------------------CCcEEEEECCCCCccEEEeccccCCeEEE
Q 014934 244 RTMEGHRLRVGALAWS---SSLLSSGSR-----------------------DKSILQRDIRAQEDFVSKLSGHKSEVCGL 297 (415)
Q Consensus 244 ~~l~~h~~~V~~l~~~---~~~l~sgs~-----------------------dg~I~iwd~~~~~~~~~~~~~h~~~V~~l 297 (415)
..+.....-+....|. ....++|.. ...|.-.|+.+++ ...+..-...+..+
T Consensus 116 ~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~--~~~v~~~~~wlgH~ 193 (386)
T PF14583_consen 116 VVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGE--RKVVFEDTDWLGHV 193 (386)
T ss_dssp EEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT----EEEEEEESS-EEEE
T ss_pred EEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCc--eeEEEecCccccCc
Confidence 6666556666555553 222233211 1235666777765 34444445567889
Q ss_pred EEeCCCC-EEEEEeC---CCc-EEEEECCC-CceeEEeccCC--CcEEEEEEcCCCCcEEEEEc--CCCCCeEEEEECCC
Q 014934 298 KWSYDNR-ELASGGN---DNR-LFVWNQHS-TQPVLKYCEHT--AAVKAIAWSPHLHGLLASGG--GTADRCIRFWNTTT 367 (415)
Q Consensus 298 ~~spdg~-~lasg~~---dg~-I~iwd~~~-~~~~~~~~~h~--~~V~~l~~sp~~~~llasgg--g~~d~~I~iwd~~t 367 (415)
.|+|... +|+-|-+ +.. -+||-+++ +.....+..|. ..+.-=-|.|+|..+..-+. |..+..|.-+|..+
T Consensus 194 ~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t 273 (386)
T PF14583_consen 194 QFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDT 273 (386)
T ss_dssp EEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT
T ss_pred ccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCC
Confidence 9999544 4444432 221 25555432 33333333333 23445579999987665332 22567888999999
Q ss_pred CcEEEEeeCCCCEEEEEECCCCCeEEE
Q 014934 368 NTHLSCMDTGSQVCNLVWSKNVNELVS 394 (415)
Q Consensus 368 ~~~~~~~~~~~~V~~l~~s~~~~~l~s 394 (415)
++....... ..-..+.-++||+.++-
T Consensus 274 ~~~~~~~~~-p~~~H~~ss~Dg~L~vG 299 (386)
T PF14583_consen 274 GERRRLMEM-PWCSHFMSSPDGKLFVG 299 (386)
T ss_dssp --EEEEEEE--SEEEEEE-TTSSEEEE
T ss_pred CCceEEEeC-CceeeeEEcCCCCEEEe
Confidence 876443322 24556777889887665
No 370
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.27 E-value=0.096 Score=52.06 Aligned_cols=182 Identities=12% Similarity=0.156 Sum_probs=98.3
Q ss_pred ceeEeecCC-CcEEEEEcCCeEEEEECCCCCeEEeEecCC---CCCe-----EEEEEcCCCCeEEEEECCCcEEEEECCC
Q 014934 169 YLNLVDWSS-HNVLAVGLGNCVYLWNACSSKVTKLCDLGI---DDSV-----CSVGWANRNTHLAVGTSHGKVQIWDASR 239 (415)
Q Consensus 169 ~i~~l~ws~-~~~la~~~d~~V~iwd~~~~~~~~~~~~~~---~~~V-----~~v~~sp~g~~la~g~~dg~V~iwd~~~ 239 (415)
.+-.+.|.. .+++++..+|.++++|..... .+.++. ...| ....+..+| +|+-+.++.+.+..-..
T Consensus 82 ~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~~---~fsl~~~i~~~~v~e~~i~~~~~~~~G--ivvLt~~~~~~~v~n~~ 156 (410)
T PF04841_consen 82 RIVGMGWTDDEELVVVQSDGTVRVYDLFGEF---QFSLGEEIEEEKVLECRIFAIWFYKNG--IVVLTGNNRFYVVNNID 156 (410)
T ss_pred CEEEEEECCCCeEEEEEcCCEEEEEeCCCce---eechhhhccccCcccccccccccCCCC--EEEECCCCeEEEEeCcc
Confidence 477889988 788888899999999986433 222211 1122 222333355 33334555554443222
Q ss_pred Ce-eeEEec---CCCc------cEEE-EEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEE
Q 014934 240 CK-RVRTME---GHRL------RVGA-LAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNREL 306 (415)
Q Consensus 240 ~~-~~~~l~---~h~~------~V~~-l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 306 (415)
.. ..+.+. .... .+.. ..+. ....+....++.+.+.+-.... .+. ..+++..|+.||+|+++
T Consensus 157 ~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~----~i~-~~~~i~~iavSpng~~i 231 (410)
T PF04841_consen 157 EPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFK----QID-SDGPIIKIAVSPNGKFI 231 (410)
T ss_pred ccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEccccc----ccc-CCCCeEEEEECCCCCEE
Confidence 11 111111 1000 0000 0111 2233333444445533322111 111 23579999999999999
Q ss_pred EEEeCCCcEEEEECCCCceeEEeccC-CCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEEC
Q 014934 307 ASGGNDNRLFVWNQHSTQPVLKYCEH-TAAVKAIAWSPHLHGLLASGGGTADRCIRFWNT 365 (415)
Q Consensus 307 asg~~dg~I~iwd~~~~~~~~~~~~h-~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~ 365 (415)
|.-..+|.+.|.+..-.+.+..+... ......+.|+-+.. +++. ....|.+...
T Consensus 232 Al~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~da-v~l~----~~~~l~lvg~ 286 (410)
T PF04841_consen 232 ALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDA-VVLS----WEDELLLVGP 286 (410)
T ss_pred EEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCc-EEEE----eCCEEEEECC
Confidence 99999999999987666666666543 45677888986643 3332 2345666553
No 371
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.25 E-value=0.027 Score=44.40 Aligned_cols=100 Identities=14% Similarity=0.199 Sum_probs=68.5
Q ss_pred eEEEEEcC---CC-CeEEEEECCCcEEEEECCCCeeeEEecCCCccEEEEEee-CCEEEEEeCCCcEEEEECCCCCccEE
Q 014934 211 VCSVGWAN---RN-THLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWS-SSLLSSGSRDKSILQRDIRAQEDFVS 285 (415)
Q Consensus 211 V~~v~~sp---~g-~~la~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~ 285 (415)
|+++++.. +| +.|++|+.|..|++|+-. ..+..+.. ...|.+++-. +..|+.+..+|+|-+|+-.... -
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e-~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~Rl---W 75 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITE-TDKVTSLCSLGGGRFAYALANGTVGVYDRSQRL---W 75 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEec-ccceEEEEEcCCCEEEEEecCCEEEEEeCccee---e
Confidence 56666654 43 589999999999999854 55666664 4557777665 6899999999999999864332 2
Q ss_pred EeccccCCeEEEEEeC-C--C-CEEEEEeCCCcEEE
Q 014934 286 KLSGHKSEVCGLKWSY-D--N-RELASGGNDNRLFV 317 (415)
Q Consensus 286 ~~~~h~~~V~~l~~sp-d--g-~~lasg~~dg~I~i 317 (415)
..+. +..+.++.+.. + | ..|++|-.+|.|-+
T Consensus 76 RiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 76 RIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred eecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 2222 23466666553 2 2 36889988888743
No 372
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.20 E-value=0.0018 Score=64.75 Aligned_cols=92 Identities=22% Similarity=0.351 Sum_probs=78.0
Q ss_pred CCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEecCCCccEE-EEEee--CCEEEEEeCCCcEEEEECCCCCccEE
Q 014934 209 DSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVG-ALAWS--SSLLSSGSRDKSILQRDIRAQEDFVS 285 (415)
Q Consensus 209 ~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~-~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~ 285 (415)
..+.-+.|+|.-..+|.++.+|.|.+..+. .+.+-++.-|...++ +++|. |+.|+.|-.||+|++.|+.++.....
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS 99 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence 568889999999999999999999999988 777788887777777 99998 68999999999999999999885444
Q ss_pred EeccccCCeEEEEEeC
Q 014934 286 KLSGHKSEVCGLKWSY 301 (415)
Q Consensus 286 ~~~~h~~~V~~l~~sp 301 (415)
........|.++-|.+
T Consensus 100 ~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 100 FLFSVETDISKGIWDR 115 (665)
T ss_pred cccccccchheeeccc
Confidence 4445566788888874
No 373
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.07 E-value=0.0023 Score=67.63 Aligned_cols=112 Identities=18% Similarity=0.246 Sum_probs=82.3
Q ss_pred CCccEEEEEeeCCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEE
Q 014934 249 HRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLK 328 (415)
Q Consensus 249 h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~ 328 (415)
....+.+.+.-...++.|+..|.+...|++..-.+...-..-.++|.+++|+.+|..++.|-.+|.|.+||+..+++++.
T Consensus 88 ~~~~v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~ 167 (1206)
T KOG2079|consen 88 IAAGVISSAIVVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKV 167 (1206)
T ss_pred CCcceeeeeeeeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceee
Confidence 34455566666778999999999999998765333333334467899999999999999999999999999999999999
Q ss_pred eccCCCcEEEEE---EcCCCCcEEEEEcCCCCCeEEEEEC
Q 014934 329 YCEHTAAVKAIA---WSPHLHGLLASGGGTADRCIRFWNT 365 (415)
Q Consensus 329 ~~~h~~~V~~l~---~sp~~~~llasggg~~d~~I~iwd~ 365 (415)
+..|.+++.++- |..++. .+.++. ..|. +|.+
T Consensus 168 i~e~~ap~t~vi~v~~t~~nS-~llt~D--~~Gs--f~~l 202 (1206)
T KOG2079|consen 168 ITEHGAPVTGVIFVGRTSQNS-KLLTSD--TGGS--FWKL 202 (1206)
T ss_pred eeecCCccceEEEEEEeCCCc-EEEEcc--CCCc--eEEE
Confidence 988877766553 344444 555543 3343 6654
No 374
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.05 E-value=0.0067 Score=64.62 Aligned_cols=143 Identities=13% Similarity=0.116 Sum_probs=92.0
Q ss_pred CCeEEEEEcCCCCeEEEEECC--CcEEEEECCCCeee-----EEec------CCCccEEEEEeeC---CEEEEEeCCCcE
Q 014934 209 DSVCSVGWANRNTHLAVGTSH--GKVQIWDASRCKRV-----RTME------GHRLRVGALAWSS---SLLSSGSRDKSI 272 (415)
Q Consensus 209 ~~V~~v~~sp~g~~la~g~~d--g~V~iwd~~~~~~~-----~~l~------~h~~~V~~l~~~~---~~l~sgs~dg~I 272 (415)
-.+..+...+|+...++.... -.|..||+++...- .-+. ....-..++.|++ ...+.+..|+.|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 345555666777765554333 36889998653211 1111 1234466788984 567888899999
Q ss_pred EEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEecc----CCCcEEEEEEcCCCCcE
Q 014934 273 LQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCE----HTAAVKAIAWSPHLHGL 348 (415)
Q Consensus 273 ~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~~----h~~~V~~l~~sp~~~~l 348 (415)
.+.-+......+..+ .....+++++|+|.|++++.|-+.|++.=|-..-. ....+.+ ....|.+|+|-....++
T Consensus 181 ~V~~~~~~~~~v~s~-p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~le-ik~~ip~Pp~~e~yrvl~v~Wl~t~efl 258 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSF-PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLE-IKSEIPEPPVEENYRVLSVTWLSTQEFL 258 (1405)
T ss_pred hhhhhhhhhhhhccc-CcccceeeEEeccccceeeEecCCCeEEEeecccc-eeecccCCCcCCCcceeEEEEecceeEE
Confidence 888776544323322 24557899999999999999999999887765322 1122211 25789999999887766
Q ss_pred EEEEc
Q 014934 349 LASGG 353 (415)
Q Consensus 349 lasgg 353 (415)
++-+.
T Consensus 259 vvy~n 263 (1405)
T KOG3630|consen 259 VVYGN 263 (1405)
T ss_pred EEecc
Confidence 65544
No 375
>PHA02713 hypothetical protein; Provisional
Probab=97.04 E-value=0.031 Score=57.89 Aligned_cols=174 Identities=14% Similarity=0.103 Sum_probs=94.4
Q ss_pred eEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCC-----cEEEEECCCCe--eeEEecCCCccEEEEEeeC
Q 014934 188 CVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHG-----KVQIWDASRCK--RVRTMEGHRLRVGALAWSS 260 (415)
Q Consensus 188 ~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg-----~V~iwd~~~~~--~~~~l~~h~~~V~~l~~~~ 260 (415)
.+..||..++.....-.......-.++ ..-+|+..++|+.+| .|..||..+.+ .+..+.........+...+
T Consensus 321 ~v~~Yd~~~n~W~~~~~m~~~R~~~~~-~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g 399 (557)
T PHA02713 321 KVYKINIENKIHVELPPMIKNRCRFSL-AVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQ 399 (557)
T ss_pred eEEEEECCCCeEeeCCCCcchhhceeE-EEECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEECC
Confidence 478888888766544332211111122 223678888888764 48899987653 3233332222333445567
Q ss_pred CEEEEEeCCC-----------------------cEEEEECCCCCccEEEeccc-cCCe-EEEEEeCCCCEEEEEeCC---
Q 014934 261 SLLSSGSRDK-----------------------SILQRDIRAQEDFVSKLSGH-KSEV-CGLKWSYDNRELASGGND--- 312 (415)
Q Consensus 261 ~~l~sgs~dg-----------------------~I~iwd~~~~~~~~~~~~~h-~~~V-~~l~~spdg~~lasg~~d--- 312 (415)
.+.+.|+.++ .+..||..+..- .....- .... .+++ .-++++.+.||.+
T Consensus 400 ~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W--~~v~~m~~~r~~~~~~-~~~~~IYv~GG~~~~~ 476 (557)
T PHA02713 400 YIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIW--ETLPNFWTGTIRPGVV-SHKDDIYVVCDIKDEK 476 (557)
T ss_pred EEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeE--eecCCCCcccccCcEE-EECCEEEEEeCCCCCC
Confidence 7778887653 477788876541 111110 0111 1222 2257777888764
Q ss_pred ---CcEEEEECCC-Cc--eeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCC--eEEEEECCCCcE
Q 014934 313 ---NRLFVWNQHS-TQ--PVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADR--CIRFWNTTTNTH 370 (415)
Q Consensus 313 ---g~I~iwd~~~-~~--~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~--~I~iwd~~t~~~ 370 (415)
..+..||..+ .+ .+..+.........+++ +..+++.|| .++ .+..||..+.+-
T Consensus 477 ~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~---~~~iyv~Gg--~~~~~~~e~yd~~~~~W 537 (557)
T PHA02713 477 NVKTCIFRYNTNTYNGWELITTTESRLSALHTILH---DNTIMMLHC--YESYMLQDTFNVYTYEW 537 (557)
T ss_pred ccceeEEEecCCCCCCeeEccccCcccccceeEEE---CCEEEEEee--ecceeehhhcCcccccc
Confidence 2467899886 33 23333322323333333 335888887 676 677777776653
No 376
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.04 E-value=0.0021 Score=38.77 Aligned_cols=31 Identities=29% Similarity=0.613 Sum_probs=28.6
Q ss_pred CCCCCeEEEEEcCCCCeEEEEECCCcEEEEE
Q 014934 206 GIDDSVCSVGWANRNTHLAVGTSHGKVQIWD 236 (415)
Q Consensus 206 ~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd 236 (415)
.|...|.++.|.+++..+++|+.||.+++|+
T Consensus 10 ~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 10 GHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred ecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 5678999999999999999999999999996
No 377
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.99 E-value=0.28 Score=45.05 Aligned_cols=190 Identities=12% Similarity=0.098 Sum_probs=118.5
Q ss_pred eEEeEecCCCCCeEEEEEcCCCCeEEEEECCC--cEEEEECCCCeeeEEecCCC-ccEEEEEeeC-CEEEEEeCCCcEEE
Q 014934 199 VTKLCDLGIDDSVCSVGWANRNTHLAVGTSHG--KVQIWDASRCKRVRTMEGHR-LRVGALAWSS-SLLSSGSRDKSILQ 274 (415)
Q Consensus 199 ~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg--~V~iwd~~~~~~~~~l~~h~-~~V~~l~~~~-~~l~sgs~dg~I~i 274 (415)
++..+..........+.|..+|.++-+.+.-| .|+.+|+.+++......-.. ----.++..+ .+..-.=.++...+
T Consensus 35 vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~ 114 (264)
T PF05096_consen 35 VVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFV 114 (264)
T ss_dssp EEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEE
T ss_pred EEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEE
Confidence 34445434455677888877888777776655 69999999998765544221 1122333334 44444557889999
Q ss_pred EECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEeccC-----CCcEEEEEEcCCCCcEE
Q 014934 275 RDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEH-----TAAVKAIAWSPHLHGLL 349 (415)
Q Consensus 275 wd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~~h-----~~~V~~l~~sp~~~~ll 349 (415)
||..+-+ .+..+. ..++=++|+ .|++.|+.......|+.+|..+.+...++.-. -..++.+.|- +| .++
T Consensus 115 yd~~tl~-~~~~~~-y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G-~Iy 188 (264)
T PF05096_consen 115 YDPNTLK-KIGTFP-YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NG-KIY 188 (264)
T ss_dssp EETTTTE-EEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TT-EEE
T ss_pred Eccccce-EEEEEe-cCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cC-EEE
Confidence 9998765 344443 345677777 46777877777889999999888776665422 2345667776 33 366
Q ss_pred EEEcCCCCCeEEEEECCCCcEEEEeeC----------------CCCEEEEEECCCCCeEEEEEe
Q 014934 350 ASGGGTADRCIRFWNTTTNTHLSCMDT----------------GSQVCNLVWSKNVNELVSTHG 397 (415)
Q Consensus 350 asggg~~d~~I~iwd~~t~~~~~~~~~----------------~~~V~~l~~s~~~~~l~s~~g 397 (415)
|--= ....|...|..+|+.+..++. ..-.++++|.|..+.|..| |
T Consensus 189 ANVW--~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vT-G 249 (264)
T PF05096_consen 189 ANVW--QTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVT-G 249 (264)
T ss_dssp EEET--TSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEE-E
T ss_pred EEeC--CCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEE-e
Confidence 6543 567788889999999887741 1236789999888777775 5
No 378
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.98 E-value=0.017 Score=57.06 Aligned_cols=131 Identities=14% Similarity=0.113 Sum_probs=94.4
Q ss_pred CCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCC-------eEEEEECCCcEEEEECCCCe--eeEEecCCC----cc
Q 014934 186 GNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNT-------HLAVGTSHGKVQIWDASRCK--RVRTMEGHR----LR 252 (415)
Q Consensus 186 d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~-------~la~g~~dg~V~iwd~~~~~--~~~~l~~h~----~~ 252 (415)
...+|-.|++.|+++....++. .|.-+.+.|+++ .=++|-.+..|.-||.+-.. .+...++|. ..
T Consensus 355 ~~~l~klDIE~GKIVeEWk~~~--di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~n 432 (644)
T KOG2395|consen 355 QDKLYKLDIERGKIVEEWKFED--DINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNN 432 (644)
T ss_pred cCcceeeecccceeeeEeeccC--CcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccccccc
Confidence 3679999999999999887543 378888888653 23567888899999986432 233333332 23
Q ss_pred EEEEEee-CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEEC
Q 014934 253 VGALAWS-SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQ 320 (415)
Q Consensus 253 V~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~ 320 (415)
..|.+-. ..++++||.+|.|++||- .+......+.+-..+|..+..+.+|++|+..+ +..+.+-++
T Consensus 433 Fsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t 499 (644)
T KOG2395|consen 433 FSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDT 499 (644)
T ss_pred cceeeecCCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence 4454444 579999999999999997 44434566778889999999999999876554 556777675
No 379
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.94 E-value=0.33 Score=44.94 Aligned_cols=186 Identities=13% Similarity=0.154 Sum_probs=123.7
Q ss_pred CCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEecC-CCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCc
Q 014934 206 GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEG-HRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQED 282 (415)
Q Consensus 206 ~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~-h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~ 282 (415)
+....|.++.|+|+.+.|++....+.-.|+=..+|+.++++.- .-...-.|.|. +.+.++--+++.+.++.+.....
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~ 162 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTT 162 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCcc
Confidence 4456699999999999888888888777777778898888752 12234456665 34555556788888887765532
Q ss_pred cEE------Eec--cc-cCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCc-e--eEEeccCC-------CcEEEEEEcC
Q 014934 283 FVS------KLS--GH-KSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQ-P--VLKYCEHT-------AAVKAIAWSP 343 (415)
Q Consensus 283 ~~~------~~~--~h-~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~-~--~~~~~~h~-------~~V~~l~~sp 343 (415)
.+. .+. .+ .....+++|+|....|..+=+-+-+.||...... . +.....+. ..|.++.|.+
T Consensus 163 ~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~ 242 (316)
T COG3204 163 VISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNA 242 (316)
T ss_pred EEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecC
Confidence 111 111 12 4567899999999998888888877777765332 1 11111222 3567889998
Q ss_pred CCCcEEEEEcCCCCCeEEEEECCCCcEEEEee-----C-----CCCEEEEEECCCCCeEEE
Q 014934 344 HLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-----T-----GSQVCNLVWSKNVNELVS 394 (415)
Q Consensus 344 ~~~~llasggg~~d~~I~iwd~~t~~~~~~~~-----~-----~~~V~~l~~s~~~~~l~s 394 (415)
....||+-+. +++.+.-.|... ..+..+. + --+.-+++...+|...++
T Consensus 243 ~~~~LLVLS~--ESr~l~Evd~~G-~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIv 300 (316)
T COG3204 243 ITNSLLVLSD--ESRRLLEVDLSG-EVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIV 300 (316)
T ss_pred CCCcEEEEec--CCceEEEEecCC-CeeeeEEeccCCCCCcccCCCcceeEECCCCCEEEE
Confidence 8777888876 788888888654 3344332 1 134567888888876666
No 380
>PRK10115 protease 2; Provisional
Probab=96.87 E-value=0.84 Score=48.61 Aligned_cols=247 Identities=11% Similarity=0.022 Sum_probs=126.7
Q ss_pred CceeccCCCCC---CCcceeEeecCC-CcEEEEEcC--C----eEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEE
Q 014934 155 PYKILDAPALQ---DDFYLNLVDWSS-HNVLAVGLG--N----CVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLA 224 (415)
Q Consensus 155 p~~~ld~~~l~---~~~~i~~l~ws~-~~~la~~~d--~----~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la 224 (415)
+..+||...+. +.+.+..+.|+| +++|+.+.| | .|++.|+.+++..... +. ..-..++|.+|++.|+
T Consensus 111 ~~~llD~n~~a~~~~~~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~-i~--~~~~~~~w~~D~~~~~ 187 (686)
T PRK10115 111 WETLLDANKRAAHSEFYTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPEL-LD--NVEPSFVWANDSWTFY 187 (686)
T ss_pred CEEEEcchhhccCCCcEEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCcc-cc--CcceEEEEeeCCCEEE
Confidence 56677766552 235678889999 788988854 2 4999999888642221 11 1225699999998777
Q ss_pred EEECC------CcEEEEECCCC--eeeEEecCCCccEEEEEe---eCCEEEEEe---CCCcEEEEECCCCCccEEEeccc
Q 014934 225 VGTSH------GKVQIWDASRC--KRVRTMEGHRLRVGALAW---SSSLLSSGS---RDKSILQRDIRAQEDFVSKLSGH 290 (415)
Q Consensus 225 ~g~~d------g~V~iwd~~~~--~~~~~l~~h~~~V~~l~~---~~~~l~sgs---~dg~I~iwd~~~~~~~~~~~~~h 290 (415)
....+ -.|..+++.++ +....+........-..+ ++.+++..+ .++.+.+++..........+..+
T Consensus 188 y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 267 (686)
T PRK10115 188 YVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPR 267 (686)
T ss_pred EEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEEC
Confidence 76543 25778888877 333444433333321222 244444433 34578888853321111112222
Q ss_pred cC-CeEEEEEeCCCCEEEEEeC----CCcEEEEECCCCceeEEeccC-C-CcEEEEEEcCCCCcEEEEEcCCCCCeEE--
Q 014934 291 KS-EVCGLKWSYDNRELASGGN----DNRLFVWNQHSTQPVLKYCEH-T-AAVKAIAWSPHLHGLLASGGGTADRCIR-- 361 (415)
Q Consensus 291 ~~-~V~~l~~spdg~~lasg~~----dg~I~iwd~~~~~~~~~~~~h-~-~~V~~l~~sp~~~~llasggg~~d~~I~-- 361 (415)
.. ....+. +.. ..|..-++ ...|...++.+......+-.+ . ..|..+.+. +..|+++.. .++.-+
T Consensus 268 ~~~~~~~~~-~~~-~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~--~~~l~~~~~--~~g~~~l~ 341 (686)
T PRK10115 268 RKDHEYSLD-HYQ-HRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF--TDWLVVEER--QRGLTSLR 341 (686)
T ss_pred CCCCEEEEE-eCC-CEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE--CCEEEEEEE--eCCEEEEE
Confidence 22 222222 323 33333322 224555565522222233344 3 367888887 445777665 555544
Q ss_pred EEECCCCcEEEEeeC--CCCEEEEEEC--CCCCeEEEEEec--CCCcEEEEECCCC
Q 014934 362 FWNTTTNTHLSCMDT--GSQVCNLVWS--KNVNELVSTHGY--SQNQIIVWRYPTM 411 (415)
Q Consensus 362 iwd~~t~~~~~~~~~--~~~V~~l~~s--~~~~~l~s~~g~--~dg~I~vw~~~s~ 411 (415)
+++..++ .+..+.. ...+..+.++ +++..++.+..+ .-+.+..+|..+.
T Consensus 342 ~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~ 396 (686)
T PRK10115 342 QINRKTR-EVIGIAFDDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTG 396 (686)
T ss_pred EEcCCCC-ceEEecCCCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCC
Confidence 4554433 3344331 2233334444 444434332122 2357777777654
No 381
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.87 E-value=0.39 Score=44.70 Aligned_cols=193 Identities=16% Similarity=0.138 Sum_probs=111.4
Q ss_pred eeEeecCC-CcEEEEEcCCeEEEEECCCCCeEEeE-------------ecCCCCCeEEEE---EcCCCCeEEEEECCCcE
Q 014934 170 LNLVDWSS-HNVLAVGLGNCVYLWNACSSKVTKLC-------------DLGIDDSVCSVG---WANRNTHLAVGTSHGKV 232 (415)
Q Consensus 170 i~~l~ws~-~~~la~~~d~~V~iwd~~~~~~~~~~-------------~~~~~~~V~~v~---~sp~g~~la~g~~dg~V 232 (415)
|.-+..-+ -++|.+-.|+.++++++..-...... .+.....+..++ -...+.+|+++. ...|
T Consensus 38 I~ql~vl~~~~~llvLsd~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~-kk~i 116 (275)
T PF00780_consen 38 ITQLSVLPELNLLLVLSDGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAV-KKKI 116 (275)
T ss_pred EEEEEEecccCEEEEEcCCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEE-CCEE
Confidence 44444444 45666667899999998764433311 123334555555 122334555554 4488
Q ss_pred EEEECCCC-----eeeEEecCCCccEEEEEeeCCEEEEEeCCCcEEEEECCCCCccEEEec--c----------ccCCeE
Q 014934 233 QIWDASRC-----KRVRTMEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLS--G----------HKSEVC 295 (415)
Q Consensus 233 ~iwd~~~~-----~~~~~l~~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~--~----------h~~~V~ 295 (415)
.+|..... +..+.+. -...+.+++|.++.++.|..++ ..+.|+.++.. ...+. . ...++.
T Consensus 117 ~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~~~~i~v~~~~~-f~~idl~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~ 193 (275)
T PF00780_consen 117 LIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFLGNKICVGTSKG-FYLIDLNTGSP-SELLDPSDSSSSFKSRNSSSKPLG 193 (275)
T ss_pred EEEEEECCcccccceeEEEE-cCCCcEEEEEeCCEEEEEeCCc-eEEEecCCCCc-eEEeCccCCcchhhhcccCCCceE
Confidence 88887542 3445554 4578999999999999998665 78889886552 22221 1 112344
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEECCCCceeE--EeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEE
Q 014934 296 GLKWSYDNRELASGGNDNRLFVWNQHSTQPVL--KYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSC 373 (415)
Q Consensus 296 ~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~--~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~ 373 (415)
.+... ++.+|++- |+.-...|. .|++.. .+.- ...+.++++. ..++++.. ++.|.||++.+++.++.
T Consensus 194 ~~~~~-~~e~Ll~~--~~~g~fv~~-~G~~~r~~~i~W-~~~p~~~~~~--~pyli~~~----~~~iEV~~~~~~~lvQ~ 262 (275)
T PF00780_consen 194 IFQLS-DNEFLLCY--DNIGVFVNK-NGEPSRKSTIQW-SSAPQSVAYS--SPYLIAFS----SNSIEVRSLETGELVQT 262 (275)
T ss_pred EEEeC-CceEEEEe--cceEEEEcC-CCCcCcccEEEc-CCchhEEEEE--CCEEEEEC----CCEEEEEECcCCcEEEE
Confidence 44443 45555543 333333344 443332 2322 2345566664 34576654 57799999999999998
Q ss_pred eeCC
Q 014934 374 MDTG 377 (415)
Q Consensus 374 ~~~~ 377 (415)
+...
T Consensus 263 i~~~ 266 (275)
T PF00780_consen 263 IPLP 266 (275)
T ss_pred EECC
Confidence 8743
No 382
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.86 E-value=0.3 Score=50.81 Aligned_cols=180 Identities=11% Similarity=0.132 Sum_probs=97.9
Q ss_pred CCeEEEEEcCCCCeEEEEE------CCCcEEEEECCCCeeeEEe-cCCCccEEEEEeeC--CEEEEEeC-----------
Q 014934 209 DSVCSVGWANRNTHLAVGT------SHGKVQIWDASRCKRVRTM-EGHRLRVGALAWSS--SLLSSGSR----------- 268 (415)
Q Consensus 209 ~~V~~v~~sp~g~~la~g~------~dg~V~iwd~~~~~~~~~l-~~h~~~V~~l~~~~--~~l~sgs~----------- 268 (415)
..+.+.+++|+|+.+|... .|+.-.||-...+.....+ .+. ..+.-.|++ ..|++...
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~~~ 427 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIRDP 427 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecCC--CCCCceECCCCCceEEEecCcceEEEeccC
Confidence 4688999999999887765 2444444433222212222 322 366677773 44544432
Q ss_pred -CCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEE---EECCCCce-e---EEec-cCCCcEEEE
Q 014934 269 -DKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFV---WNQHSTQP-V---LKYC-EHTAAVKAI 339 (415)
Q Consensus 269 -dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~i---wd~~~~~~-~---~~~~-~h~~~V~~l 339 (415)
.+.+.+.+++.+.. .. .....|..+.|||||..+|... +++|+| -....+.. + ..+. .-...+..+
T Consensus 428 ~~gql~~~~vd~ge~-~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l 502 (591)
T PRK13616 428 ATGQLARTPVDASAV-AS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSL 502 (591)
T ss_pred CCceEEEEeccCchh-hh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccc
Confidence 23444445544431 11 3356799999999999988765 477877 44444431 1 1122 223346889
Q ss_pred EEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeC---CCCEEEEEECCCCCeEEEEEecCCCc
Q 014934 340 AWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDT---GSQVCNLVWSKNVNELVSTHGYSQNQ 402 (415)
Q Consensus 340 ~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~---~~~V~~l~~s~~~~~l~s~~g~~dg~ 402 (415)
.|..++. |++...+ .+..+...++.... ...+.. ..++..++-++. .++. ...++.
T Consensus 503 ~W~~~~~-L~V~~~~-~~~~v~~v~vDG~~-~~~~~~~n~~~~v~~vaa~~~--~iyv--~~~~g~ 561 (591)
T PRK13616 503 DWRTGDS-LVVGRSD-PEHPVWYVNLDGSN-SDALPSRNLSAPVVAVAASPS--TVYV--TDARAV 561 (591)
T ss_pred eEecCCE-EEEEecC-CCCceEEEecCCcc-ccccCCCCccCceEEEecCCc--eEEE--EcCCce
Confidence 9999987 5543321 34445444554222 212122 355667776653 3444 234553
No 383
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.85 E-value=0.28 Score=52.15 Aligned_cols=209 Identities=12% Similarity=0.091 Sum_probs=131.3
Q ss_pred eEEEEECCCCCeEEeEecCCCCCeEE---EEEcCC-CCeEEEEEC----------CCcEEEEECCCCeeeEEecCC--Cc
Q 014934 188 CVYLWNACSSKVTKLCDLGIDDSVCS---VGWANR-NTHLAVGTS----------HGKVQIWDASRCKRVRTMEGH--RL 251 (415)
Q Consensus 188 ~V~iwd~~~~~~~~~~~~~~~~~V~~---v~~sp~-g~~la~g~~----------dg~V~iwd~~~~~~~~~l~~h--~~ 251 (415)
.++++|.+|-+.....++.....+.+ +.|..| +.++++|+. .|.|.++.....+.++.+..+ .+
T Consensus 751 ~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~G 830 (1096)
T KOG1897|consen 751 FLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKG 830 (1096)
T ss_pred EEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeecc
Confidence 48888888888777777655555444 448877 789999864 478888888764444444332 34
Q ss_pred cEEEEE-eeCCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECC--CCceeEE
Q 014934 252 RVGALA-WSSSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQH--STQPVLK 328 (415)
Q Consensus 252 ~V~~l~-~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~--~~~~~~~ 328 (415)
.|.++. |++.+++. -...|++|++...+ .++.-..|..++..+...-.|..+|+|..=+.+.+--.+ .+.....
T Consensus 831 av~aL~~fngkllA~--In~~vrLye~t~~~-eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~ev 907 (1096)
T KOG1897|consen 831 AVYALVEFNGKLLAG--INQSVRLYEWTTER-ELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEV 907 (1096)
T ss_pred ceeehhhhCCeEEEe--cCcEEEEEEccccc-eehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEe
Confidence 555554 34555443 45679999998775 356666788889999999999999999887776654433 3333322
Q ss_pred ec-cCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCC-------------------CcEEEEeeCCCCEEE--EEEC
Q 014934 329 YC-EHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTT-------------------NTHLSCMDTGSQVCN--LVWS 386 (415)
Q Consensus 329 ~~-~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t-------------------~~~~~~~~~~~~V~~--l~~s 386 (415)
-+ .+....+++.+-.+..++.+. .++.+.+--..+ |+.+..+.+++-|.. -..+
T Consensus 908 ArD~~p~Wmtaveil~~d~ylgae----~~gNlf~v~~d~~~~td~eR~~l~~~~~~hlGelvn~f~hg~lv~~~~~s~~ 983 (1096)
T KOG1897|consen 908 ARDYNPNWMTAVEILDDDTYLGAE----NSGNLFTVRKDSDATTDEERQILEEVGKFHLGELVNKFRHGSLVMQLGDSMI 983 (1096)
T ss_pred ehhhCccceeeEEEecCceEEeec----ccccEEEEEecCCCCchhhhhcccceeeEEeccceeeeeecceEeecccccc
Confidence 22 366677888777665533332 456666554332 233444445555555 2334
Q ss_pred CCCCeEEEEEecCCCcEEE
Q 014934 387 KNVNELVSTHGYSQNQIIV 405 (415)
Q Consensus 387 ~~~~~l~s~~g~~dg~I~v 405 (415)
|-+..++. |..+|.|-+
T Consensus 984 ~~~~~vlf--gTv~GsIG~ 1000 (1096)
T KOG1897|consen 984 PLEPKVLF--GTVNGSIGI 1000 (1096)
T ss_pred CCCCcEEE--EEccceEEE
Confidence 44555666 566777653
No 384
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.82 E-value=0.0017 Score=57.38 Aligned_cols=139 Identities=17% Similarity=0.156 Sum_probs=75.4
Q ss_pred EECCCcEEEEECCCCeee-EEecCCCccEEEEEeeCCEEEEEeCCCcEEEEECCCCCccE-EEeccccCCeEEEEEeCCC
Q 014934 226 GTSHGKVQIWDASRCKRV-RTMEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFV-SKLSGHKSEVCGLKWSYDN 303 (415)
Q Consensus 226 g~~dg~V~iwd~~~~~~~-~~l~~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~-~~~~~h~~~V~~l~~spdg 303 (415)
-+.+|.|+-+++...+.- +.-..|... ..+.=-...+++|+.+|.|++|......... ....+-....+.+.--.++
T Consensus 36 ~sa~~~v~~~~~~k~k~s~rse~~~~e~-~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~ 114 (238)
T KOG2444|consen 36 TSADGLVRERKVRKHKESCRSERFIDEG-QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDS 114 (238)
T ss_pred ccCCcccccchhhhhhhhhhhhhhhhcc-eeecccCceEEeecccceEEEecCCccchHHHhhhcccccceecccccccc
Confidence 466777777666543211 111111111 1111115789999999999999887332111 1112223334445444567
Q ss_pred CEEEEEeCCCcEEEEECCCCceeEEeccCC-CcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECC
Q 014934 304 RELASGGNDNRLFVWNQHSTQPVLKYCEHT-AAVKAIAWSPHLHGLLASGGGTADRCIRFWNTT 366 (415)
Q Consensus 304 ~~lasg~~dg~I~iwd~~~~~~~~~~~~h~-~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~ 366 (415)
.+..+++.||.|+.|++.-.+.+-....|+ ..+..+..+..++ +++..--+.|..+++|++.
T Consensus 115 ~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~-~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 115 SLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDE-FLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred ceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCc-eEEeeccccchhhhhcchh
Confidence 788899999999999998887776665666 3333333333332 2332211145555555554
No 385
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.79 E-value=0.071 Score=55.27 Aligned_cols=191 Identities=19% Similarity=0.197 Sum_probs=109.1
Q ss_pred EeecCCCcEEEEE-cC------CeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCc-----EEEEECCC
Q 014934 172 LVDWSSHNVLAVG-LG------NCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGK-----VQIWDASR 239 (415)
Q Consensus 172 ~l~ws~~~~la~~-~d------~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~-----V~iwd~~~ 239 (415)
+++.-.+.+.++| .+ .++..||..+++............-.+++ .-+|...|+|+.||. |..||..+
T Consensus 327 ~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~-~l~g~iYavGG~dg~~~l~svE~YDp~~ 405 (571)
T KOG4441|consen 327 GVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVA-VLDGKLYAVGGFDGEKSLNSVECYDPVT 405 (571)
T ss_pred cEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeE-EECCEEEEEeccccccccccEEEecCCC
Confidence 4444445555555 34 35899999998876644432211111111 127889999999874 88888876
Q ss_pred Ce--eeEEecCCCccEEEEEeeCCEEEEEeCCC------cEEEEECCCCCccEEEecccc--CCeEEEEEeCCCCEEEEE
Q 014934 240 CK--RVRTMEGHRLRVGALAWSSSLLSSGSRDK------SILQRDIRAQEDFVSKLSGHK--SEVCGLKWSYDNRELASG 309 (415)
Q Consensus 240 ~~--~~~~l~~h~~~V~~l~~~~~~l~sgs~dg------~I~iwd~~~~~~~~~~~~~h~--~~V~~l~~spdg~~lasg 309 (415)
.+ .+..+......+....+.+.+.++||.++ ++..||..+..- .....-. ..-.+++. -++.+.+.|
T Consensus 406 ~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W--~~~~~M~~~R~~~g~a~-~~~~iYvvG 482 (571)
T KOG4441|consen 406 NKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTW--TLIAPMNTRRSGFGVAV-LNGKIYVVG 482 (571)
T ss_pred CcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCce--eecCCcccccccceEEE-ECCEEEEEC
Confidence 53 34434434455666677788889998665 467788877651 1111100 01111222 267888889
Q ss_pred eCCCc-----EEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCC-----eEEEEECCCCc
Q 014934 310 GNDNR-----LFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADR-----CIRFWNTTTNT 369 (415)
Q Consensus 310 ~~dg~-----I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~-----~I~iwd~~t~~ 369 (415)
|.|+. |..||..+.+.... ..-......+.....+..+++.|| .|+ +|..||..+.+
T Consensus 483 G~~~~~~~~~VE~ydp~~~~W~~v-~~m~~~rs~~g~~~~~~~ly~vGG--~~~~~~l~~ve~ydp~~d~ 549 (571)
T KOG4441|consen 483 GFDGTSALSSVERYDPETNQWTMV-APMTSPRSAVGVVVLGGKLYAVGG--FDGNNNLNTVECYDPETDT 549 (571)
T ss_pred CccCCCccceEEEEcCCCCceeEc-ccCccccccccEEEECCEEEEEec--ccCccccceeEEcCCCCCc
Confidence 88763 77788877654322 222222233333333455888886 554 46666666554
No 386
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=96.70 E-value=0.61 Score=47.99 Aligned_cols=191 Identities=16% Similarity=0.123 Sum_probs=111.1
Q ss_pred CCeEEEEECCCcEEEEECCCCeeeEEecCCC-ccE----------EEEEeeCCEEEEEeCCCcEEEEECCCCCccEEEec
Q 014934 220 NTHLAVGTSHGKVQIWDASRCKRVRTMEGHR-LRV----------GALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLS 288 (415)
Q Consensus 220 g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~-~~V----------~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~ 288 (415)
+..|.+++.++.|.-+|..+++.+-.+.... ..+ ..++..+..++.++.|+.+.-.|.++++..-..-.
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg~l~ALDa~TGk~~W~~~~ 148 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLDARLVALDAKTGKVVWSKKN 148 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCCCEEEEEECCCCCEEeeccc
Confidence 4567777778888888998888775554211 111 11344467788889999999999998874322211
Q ss_pred -cccCCeEEEEEeC---CCCEEEEEe------CCCcEEEEECCCCceeEEeccCCC------------------------
Q 014934 289 -GHKSEVCGLKWSY---DNRELASGG------NDNRLFVWNQHSTQPVLKYCEHTA------------------------ 334 (415)
Q Consensus 289 -~h~~~V~~l~~sp---dg~~lasg~------~dg~I~iwd~~~~~~~~~~~~h~~------------------------ 334 (415)
.+... ..+.-+| ++ .++++. .+|.|.-+|.++++.+.++..-..
T Consensus 149 ~~~~~~-~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~ 226 (527)
T TIGR03075 149 GDYKAG-YTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGD 226 (527)
T ss_pred cccccc-ccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCC
Confidence 11110 0111122 44 444443 268999999999998877642110
Q ss_pred -------cEE-EEEEcCCCCcEEEEEcCC------C----C----CeEEEEECCCCcEEEEeeC-C---------CCEEE
Q 014934 335 -------AVK-AIAWSPHLHGLLASGGGT------A----D----RCIRFWNTTTNTHLSCMDT-G---------SQVCN 382 (415)
Q Consensus 335 -------~V~-~l~~sp~~~~llasggg~------~----d----~~I~iwd~~t~~~~~~~~~-~---------~~V~~ 382 (415)
.+. .+++.|... ++..+.|. . | .+|.-.|++||+....++. . .+..=
T Consensus 227 ~~~~gg~~~W~~~s~D~~~~-lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l 305 (527)
T TIGR03075 227 AWKTGGGATWGTGSYDPETN-LIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMIL 305 (527)
T ss_pred ccccCCCCccCceeEcCCCC-eEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEE
Confidence 111 235555544 33333221 0 1 2677789999998776652 1 12222
Q ss_pred EEECCCCC--eEEEEEecCCCcEEEEECCCCccc
Q 014934 383 LVWSKNVN--ELVSTHGYSQNQIIVWRYPTMSKV 414 (415)
Q Consensus 383 l~~s~~~~--~l~s~~g~~dg~I~vw~~~s~~~l 414 (415)
+....+|+ .++. ++..+|.+.+.|-.+++.+
T Consensus 306 ~d~~~~G~~~~~v~-~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 306 FDLKKDGKPRKLLA-HADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred EEeccCCcEEEEEE-EeCCCceEEEEECCCCcee
Confidence 33335665 2332 2789999999999888653
No 387
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.62 E-value=0.81 Score=44.95 Aligned_cols=214 Identities=10% Similarity=0.080 Sum_probs=101.0
Q ss_pred EEEEEc-CCeEEEEECCCC----CeEEeEec---CCC---CCeEEEEEcCCCCeEEEEEC------CCcEEEEECCCCee
Q 014934 180 VLAVGL-GNCVYLWNACSS----KVTKLCDL---GID---DSVCSVGWANRNTHLAVGTS------HGKVQIWDASRCKR 242 (415)
Q Consensus 180 ~la~~~-d~~V~iwd~~~~----~~~~~~~~---~~~---~~V~~v~~sp~g~~la~g~~------dg~V~iwd~~~~~~ 242 (415)
+++-|. .+.|||.|+.+. ++.++++- ... .....+---|+|..++++-. -|.+.++|-++.+.
T Consensus 90 Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v 169 (461)
T PF05694_consen 90 LILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETFEV 169 (461)
T ss_dssp EEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--E
T ss_pred EEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCccccc
Confidence 444454 578999998843 44555431 000 12233444578988887532 35688899888777
Q ss_pred eEEecCC---CccEEEEEeeC--CEEEEEe--------------------CCCcEEEEECCCCCccEEEeccc-c-CCeE
Q 014934 243 VRTMEGH---RLRVGALAWSS--SLLSSGS--------------------RDKSILQRDIRAQEDFVSKLSGH-K-SEVC 295 (415)
Q Consensus 243 ~~~l~~h---~~~V~~l~~~~--~~l~sgs--------------------~dg~I~iwd~~~~~~~~~~~~~h-~-~~V~ 295 (415)
+...+.. ...-..+-|.+ +.+++.. .-.++.+||+...+ .++.+.-- . ....
T Consensus 170 ~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~-~~Q~idLg~~g~~pL 248 (461)
T PF05694_consen 170 KGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRK-LLQTIDLGEEGQMPL 248 (461)
T ss_dssp EEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTE-EEEEEES-TTEEEEE
T ss_pred cceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCc-EeeEEecCCCCCceE
Confidence 7666532 22334455553 4555553 23579999999887 45555422 2 2344
Q ss_pred EEEEeC--CCCE-EEEEeCCCcEEEEEC-CCCc----eeEEeccC-----------------CCcEEEEEEcCCCCcEEE
Q 014934 296 GLKWSY--DNRE-LASGGNDNRLFVWNQ-HSTQ----PVLKYCEH-----------------TAAVKAIAWSPHLHGLLA 350 (415)
Q Consensus 296 ~l~~sp--dg~~-lasg~~dg~I~iwd~-~~~~----~~~~~~~h-----------------~~~V~~l~~sp~~~~lla 350 (415)
.|.|.. +..+ |+.+.-...|..|-- ..++ .+..+... ..-|+.|..|.|.++|++
T Consensus 249 EvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYv 328 (461)
T PF05694_consen 249 EVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYV 328 (461)
T ss_dssp EEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEE
T ss_pred EEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEE
Confidence 566654 4444 333334455555543 3332 22222110 244789999999999999
Q ss_pred EEcCCCCCeEEEEECCCC---cEEEEeeCCCC-----------------EEEEEECCCCCeEEEEE
Q 014934 351 SGGGTADRCIRFWNTTTN---THLSCMDTGSQ-----------------VCNLVWSKNVNELVSTH 396 (415)
Q Consensus 351 sggg~~d~~I~iwd~~t~---~~~~~~~~~~~-----------------V~~l~~s~~~~~l~s~~ 396 (415)
++= .+|.|+.||+..- +++..+..++. ..-+..|.||+.|..|.
T Consensus 329 s~W--~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 329 SNW--LHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp EET--TTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred Ecc--cCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 886 7999999999864 33444332222 24578899999998864
No 388
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.58 E-value=0.7 Score=43.73 Aligned_cols=226 Identities=12% Similarity=0.143 Sum_probs=111.5
Q ss_pred CcceeEeecCCCcEEEEEcCCeEEEEECCCCCeEEeEecC--CCCCeEEEEEcCCCCeEEEEECCCcEEEEECC-CCeee
Q 014934 167 DFYLNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLG--IDDSVCSVGWANRNTHLAVGTSHGKVQIWDAS-RCKRV 243 (415)
Q Consensus 167 ~~~i~~l~ws~~~~la~~~d~~V~iwd~~~~~~~~~~~~~--~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~-~~~~~ 243 (415)
++.++.|.+..+..+++|..+. .+...+.|+.-..+.+. -.+....+....++..++ ++..|.| |-.. .++.-
T Consensus 61 ~~~l~~I~f~~~~g~ivG~~g~-ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l-~~~~G~i--y~T~DgG~tW 136 (302)
T PF14870_consen 61 DYHLNSISFDGNEGWIVGEPGL-LLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAEL-AGDRGAI--YRTTDGGKTW 136 (302)
T ss_dssp --EEEEEEEETTEEEEEEETTE-EEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEE-EETT--E--EEESSTTSSE
T ss_pred eeeEEEEEecCCceEEEcCCce-EEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEE-EcCCCcE--EEeCCCCCCe
Confidence 4567888888777777776554 34444445433333221 123444454444444333 3445543 3322 23222
Q ss_pred E-EecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEEC
Q 014934 244 R-TMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQ 320 (415)
Q Consensus 244 ~-~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~ 320 (415)
. ....-.+.+..+.-. +.+++++..-....-||--... -...-..-...|..|.|.|++.+.+.+ ..|.|+.=+.
T Consensus 137 ~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~-w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~ 214 (302)
T PF14870_consen 137 QAVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTT-WQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDD 214 (302)
T ss_dssp EEEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS--EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-
T ss_pred eEcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCcc-ceEEccCccceehhceecCCCCEEEEe-CCcEEEEccC
Confidence 2 233445667776665 4566666555555577765432 122223346789999999998876655 7888888772
Q ss_pred -CCCceeEE----eccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee----CCCCEEEEEECCCCCe
Q 014934 321 -HSTQPVLK----YCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD----TGSQVCNLVWSKNVNE 391 (415)
Q Consensus 321 -~~~~~~~~----~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~----~~~~V~~l~~s~~~~~ 391 (415)
........ ...-.-.+..++|.+.+. +.++|+ .+. .+.....|+.-+... ..+.++.+.|..+.+-
T Consensus 215 ~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~-~wa~gg---~G~-l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~g 289 (302)
T PF14870_consen 215 PDDGETWSEPIIPIKTNGYGILDLAYRPPNE-IWAVGG---SGT-LLVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKG 289 (302)
T ss_dssp TTEEEEE---B-TTSS--S-EEEEEESSSS--EEEEES---TT--EEEESSTTSS-EE-GGGTTSSS---EEEEEETTEE
T ss_pred CCCccccccccCCcccCceeeEEEEecCCCC-EEEEeC---Ccc-EEEeCCCCccceECccccCCCCceEEEEEcCCCce
Confidence 22221111 111223478999999865 777775 453 345666777666554 2456888999877777
Q ss_pred EEEEEecCCCcEEEE
Q 014934 392 LVSTHGYSQNQIIVW 406 (415)
Q Consensus 392 l~s~~g~~dg~I~vw 406 (415)
++. | .+|.|.-|
T Consensus 290 f~l--G-~~G~ll~~ 301 (302)
T PF14870_consen 290 FVL--G-QDGVLLRY 301 (302)
T ss_dssp EEE----STTEEEEE
T ss_pred EEE--C-CCcEEEEe
Confidence 777 5 68887665
No 389
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.51 E-value=0.0063 Score=64.55 Aligned_cols=93 Identities=22% Similarity=0.352 Sum_probs=69.4
Q ss_pred cEEEEEc-CCeEEEEECCCCCeEEeEec-CCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEecCCCccEEEE
Q 014934 179 NVLAVGL-GNCVYLWNACSSKVTKLCDL-GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGAL 256 (415)
Q Consensus 179 ~~la~~~-d~~V~iwd~~~~~~~~~~~~-~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l 256 (415)
..+++|. .|.|-..|..+. +.....- ...++|++++|+.+|..++.|-.+|.|.+||+.+++.++.+..|..+++.+
T Consensus 100 ~~ivi~Ts~ghvl~~d~~~n-L~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~v 178 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMTGN-LGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGV 178 (1206)
T ss_pred eeEEEEcCchhhhhhhhhcc-cchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceE
Confidence 4466664 467877776543 2211111 236799999999999999999999999999999999999988887777766
Q ss_pred Eee-----CCEEEEEeCCCcE
Q 014934 257 AWS-----SSLLSSGSRDKSI 272 (415)
Q Consensus 257 ~~~-----~~~l~sgs~dg~I 272 (415)
-+. +..++++..-|.+
T Consensus 179 i~v~~t~~nS~llt~D~~Gsf 199 (1206)
T KOG2079|consen 179 IFVGRTSQNSKLLTSDTGGSF 199 (1206)
T ss_pred EEEEEeCCCcEEEEccCCCce
Confidence 554 3568888777763
No 390
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.50 E-value=0.011 Score=39.01 Aligned_cols=33 Identities=21% Similarity=0.481 Sum_probs=29.7
Q ss_pred CCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCe
Q 014934 208 DDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCK 241 (415)
Q Consensus 208 ~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~ 241 (415)
...|.+++|+|..++||+|+.+|.|.++.+ +++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 467999999999999999999999999998 444
No 391
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.50 E-value=1.3 Score=47.44 Aligned_cols=194 Identities=11% Similarity=0.039 Sum_probs=112.5
Q ss_pred cEEEEE-cCCeEEEEECCCCCeEEeEecCCCC-------CeEEEEEc----------------CCCCeEEEEECCCcEEE
Q 014934 179 NVLAVG-LGNCVYLWNACSSKVTKLCDLGIDD-------SVCSVGWA----------------NRNTHLAVGTSHGKVQI 234 (415)
Q Consensus 179 ~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~-------~V~~v~~s----------------p~g~~la~g~~dg~V~i 234 (415)
+.|.++ .++.|+-.|..+|+..-.++..... ....+.+. .++.++++++.||.|.-
T Consensus 195 g~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiA 274 (764)
T TIGR03074 195 DTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIA 274 (764)
T ss_pred CEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEE
Confidence 444444 5678888899888876666532111 11223332 13457888999999999
Q ss_pred EECCCCeeeEEecCCCccE----------------EE-EEeeCCEEEEEeC----------CCcEEEEECCCCCccEEEe
Q 014934 235 WDASRCKRVRTMEGHRLRV----------------GA-LAWSSSLLSSGSR----------DKSILQRDIRAQEDFVSKL 287 (415)
Q Consensus 235 wd~~~~~~~~~l~~h~~~V----------------~~-l~~~~~~l~sgs~----------dg~I~iwd~~~~~~~~~~~ 287 (415)
.|.++++.+-.+.. .+.| ++ -...++.+++|+. +|.|+-+|.++++..-...
T Consensus 275 LDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~ 353 (764)
T TIGR03074 275 LDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWD 353 (764)
T ss_pred EECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEe
Confidence 99999998866532 1111 00 1112466777753 6889999999987422221
Q ss_pred ccc--------cC--------Ce-EEEEEeCCCCEEEEEe------------------CCCcEEEEECCCCceeEEeccC
Q 014934 288 SGH--------KS--------EV-CGLKWSYDNRELASGG------------------NDNRLFVWNQHSTQPVLKYCEH 332 (415)
Q Consensus 288 ~~h--------~~--------~V-~~l~~spdg~~lasg~------------------~dg~I~iwd~~~~~~~~~~~~h 332 (415)
.+. .+ .+ ..++++++..++..+. ..+.|.-.|+++++....++..
T Consensus 354 ~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~ 433 (764)
T TIGR03074 354 PGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQTV 433 (764)
T ss_pred cCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEeccc
Confidence 110 00 11 2334455444444321 1245667788889888777642
Q ss_pred CCcEEE---------EEEcC-CCC--cEEEEEcCCCCCeEEEEECCCCcEEEEee
Q 014934 333 TAAVKA---------IAWSP-HLH--GLLASGGGTADRCIRFWNTTTNTHLSCMD 375 (415)
Q Consensus 333 ~~~V~~---------l~~sp-~~~--~llasggg~~d~~I~iwd~~t~~~~~~~~ 375 (415)
...+.. +.+.. +|+ .+++.+. .+|.+.+.|-++|+.+..++
T Consensus 434 ~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~--K~G~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 434 HHDLWDMDVPAQPSLVDLPDADGTTVPALVAPT--KQGQIYVLDRRTGEPIVPVE 486 (764)
T ss_pred CCccccccccCCceEEeeecCCCcEeeEEEEEC--CCCEEEEEECCCCCEEeece
Confidence 221111 12222 342 2555554 89999999999999887653
No 392
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.48 E-value=0.38 Score=45.71 Aligned_cols=175 Identities=13% Similarity=0.032 Sum_probs=111.0
Q ss_pred CCCcEEEEEcCCeEEEEECCCCCe-EEeEecCC---CCCeEEEEEcCCCCeEEEEEC-----------CCcEEEEECCCC
Q 014934 176 SSHNVLAVGLGNCVYLWNACSSKV-TKLCDLGI---DDSVCSVGWANRNTHLAVGTS-----------HGKVQIWDASRC 240 (415)
Q Consensus 176 s~~~~la~~~d~~V~iwd~~~~~~-~~~~~~~~---~~~V~~v~~sp~g~~la~g~~-----------dg~V~iwd~~~~ 240 (415)
..+..|+++ +..+++++.+++.. ..+..... ....+.+...|+|.+.+.... -|.|..+|. .+
T Consensus 75 d~~g~Lv~~-~~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g 152 (307)
T COG3386 75 DAGGRLIAC-EHGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DG 152 (307)
T ss_pred cCCCeEEEE-ccccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CC
Confidence 334444444 55677777766666 34433321 244567888899886654333 133444443 46
Q ss_pred eeeEEecCCCccEEEEEeeC--CEEEEEe-CCCcEEEEECCC--C---C-ccEEEeccccCCeEEEEEeCCCCEEEEEeC
Q 014934 241 KRVRTMEGHRLRVGALAWSS--SLLSSGS-RDKSILQRDIRA--Q---E-DFVSKLSGHKSEVCGLKWSYDNRELASGGN 311 (415)
Q Consensus 241 ~~~~~l~~h~~~V~~l~~~~--~~l~sgs-~dg~I~iwd~~~--~---~-~~~~~~~~h~~~V~~l~~spdg~~lasg~~ 311 (415)
..++.+..+-..-+.|+|++ +.|+... ..+.|..|++.. . . .....+....+..-+++...+|.+.+++..
T Consensus 153 ~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~ 232 (307)
T COG3386 153 GVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVW 232 (307)
T ss_pred CEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEeccc
Confidence 66666666666778899994 4555554 457888887762 1 1 112222234566778888889998865555
Q ss_pred CC-cEEEEECCCCceeEEeccCCCcEEEEEEc-CCCCcEEEEEc
Q 014934 312 DN-RLFVWNQHSTQPVLKYCEHTAAVKAIAWS-PHLHGLLASGG 353 (415)
Q Consensus 312 dg-~I~iwd~~~~~~~~~~~~h~~~V~~l~~s-p~~~~llasgg 353 (415)
+| .|.+|+.. ++.+..+.-+...+.+++|- |+.+.|++++.
T Consensus 233 ~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 233 GGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred CCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEec
Confidence 54 89999998 88988888776778888885 45566777764
No 393
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.44 E-value=0.13 Score=53.43 Aligned_cols=166 Identities=15% Similarity=0.116 Sum_probs=89.6
Q ss_pred CCcEEEEECCCCeeeEEecCCCccEEEEEee--CCEEEEEe------CCC--cEEEEECCCCCccEEEeccccCCeEEEE
Q 014934 229 HGKVQIWDASRCKRVRTMEGHRLRVGALAWS--SSLLSSGS------RDK--SILQRDIRAQEDFVSKLSGHKSEVCGLK 298 (415)
Q Consensus 229 dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs------~dg--~I~iwd~~~~~~~~~~~~~h~~~V~~l~ 298 (415)
+|.+.-.+-.....+.-..+....+...+.+ ++.++... .|. .|.+++.... ......+ .....-.
T Consensus 328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~--~~~lt~g--~~~t~Ps 403 (591)
T PRK13616 328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGV--AVQVLEG--HSLTRPS 403 (591)
T ss_pred CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCc--ceeeecC--CCCCCce
Confidence 6666554432222222222222345666666 44444433 233 4566565322 2222333 2478889
Q ss_pred EeCCCCEEEEEeCC------------CcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEE---E
Q 014934 299 WSYDNRELASGGND------------NRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRF---W 363 (415)
Q Consensus 299 ~spdg~~lasg~~d------------g~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~i---w 363 (415)
|+|||+.|++.... +.+.+.++..+.... ...+.|..+.|+|||..+++.. ++.|.+ -
T Consensus 404 WspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~----~g~v~Va~Vv 476 (591)
T PRK13616 404 WSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII----GGKVYLAVVE 476 (591)
T ss_pred ECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE----CCEEEEEEEE
Confidence 99999888776533 233333443333222 2356799999999999887765 356776 4
Q ss_pred ECCCCcE-E---EEee--CCCCEEEEEECCCCCeEEEEEecCCCcEEEEEC
Q 014934 364 NTTTNTH-L---SCMD--TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRY 408 (415)
Q Consensus 364 d~~t~~~-~---~~~~--~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~ 408 (415)
....|+. + ..+. ....+..+.|..++..++.+ .++.-.+|.+
T Consensus 477 r~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~---~~~~~~v~~v 524 (591)
T PRK13616 477 QTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLVVGR---SDPEHPVWYV 524 (591)
T ss_pred eCCCCceeecccEEeecccCCccccceEecCCEEEEEe---cCCCCceEEE
Confidence 4445541 1 1122 23346889999999865442 3333444543
No 394
>PHA03098 kelch-like protein; Provisional
Probab=96.39 E-value=0.27 Score=50.70 Aligned_cols=174 Identities=14% Similarity=0.063 Sum_probs=88.6
Q ss_pred eEEEEECCCCCeEEeEecCC-CCCeEEEEEcCCCCeEEEEECC-----CcEEEEECCCCeee--EEecCCCccEEEEEee
Q 014934 188 CVYLWNACSSKVTKLCDLGI-DDSVCSVGWANRNTHLAVGTSH-----GKVQIWDASRCKRV--RTMEGHRLRVGALAWS 259 (415)
Q Consensus 188 ~V~iwd~~~~~~~~~~~~~~-~~~V~~v~~sp~g~~la~g~~d-----g~V~iwd~~~~~~~--~~l~~h~~~V~~l~~~ 259 (415)
.++.||..+.+....-.... ......+. -++...+.|+.+ ..+..||..+.+-. ..+.............
T Consensus 312 ~v~~yd~~~~~W~~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~ 389 (534)
T PHA03098 312 SVVSYDTKTKSWNKVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVN 389 (534)
T ss_pred cEEEEeCCCCeeeECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEEC
Confidence 58889988887755543321 22222222 367788888765 34778888765322 2222111222233345
Q ss_pred CCEEEEEeCC------CcEEEEECCCCCccEEEeccccC--CeEEEEEeCCCCEEEEEeCC--------CcEEEEECCCC
Q 014934 260 SSLLSSGSRD------KSILQRDIRAQEDFVSKLSGHKS--EVCGLKWSYDNRELASGGND--------NRLFVWNQHST 323 (415)
Q Consensus 260 ~~~l~sgs~d------g~I~iwd~~~~~~~~~~~~~h~~--~V~~l~~spdg~~lasg~~d--------g~I~iwd~~~~ 323 (415)
+.+.+.|+.+ ..+..||+.+.. ......... .-.++. ..++.+++.||.+ ..+.+||..+.
T Consensus 390 ~~iYv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~ 466 (534)
T PHA03098 390 NLIYVIGGISKNDELLKTVECFSLNTNK--WSKGSPLPISHYGGCAI-YHDGKIYVIGGISYIDNIKVYNIVESYNPVTN 466 (534)
T ss_pred CEEEEECCcCCCCcccceEEEEeCCCCe--eeecCCCCccccCceEE-EECCEEEEECCccCCCCCcccceEEEecCCCC
Confidence 6677777732 358889987654 111111110 011122 2356677777643 23889998776
Q ss_pred ceeEE--eccCCCcEEEEEEcCCCCcEEEEEcCCC---CCeEEEEECCCCc
Q 014934 324 QPVLK--YCEHTAAVKAIAWSPHLHGLLASGGGTA---DRCIRFWNTTTNT 369 (415)
Q Consensus 324 ~~~~~--~~~h~~~V~~l~~sp~~~~llasggg~~---d~~I~iwd~~t~~ 369 (415)
+-... +.........+.+ ++ .+++.||... ...|.+||..+.+
T Consensus 467 ~W~~~~~~~~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 467 KWTELSSLNFPRINASLCIF--NN-KIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred ceeeCCCCCcccccceEEEE--CC-EEEEEcCCcCCcccceeEEEeCCCCE
Confidence 43221 1111111122222 33 4777775211 2467788877664
No 395
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.34 E-value=0.85 Score=42.10 Aligned_cols=228 Identities=11% Similarity=0.065 Sum_probs=129.8
Q ss_pred EeecCC--CcEEEEEc--CCeEEEEECCCCCeEEeEecCCCC-CeEEEEEcCCCCeEEEEEC-----CCcEEEEECCCC-
Q 014934 172 LVDWSS--HNVLAVGL--GNCVYLWNACSSKVTKLCDLGIDD-SVCSVGWANRNTHLAVGTS-----HGKVQIWDASRC- 240 (415)
Q Consensus 172 ~l~ws~--~~~la~~~--d~~V~iwd~~~~~~~~~~~~~~~~-~V~~v~~sp~g~~la~g~~-----dg~V~iwd~~~~- 240 (415)
-+.++| ..-++.+- +...+++|..+.+...+....... ..-.=.|||||.+|...-. -|.|-|||...+
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~f 151 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGF 151 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccccc
Confidence 356777 45666663 456889999887765554321111 1122368999998887543 378999998743
Q ss_pred eeeEEecCCCccEEEEEee--CCEEEEEeCCCcEEE--------------------EECCCCCcc-EEEec--cccCCeE
Q 014934 241 KRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQ--------------------RDIRAQEDF-VSKLS--GHKSEVC 295 (415)
Q Consensus 241 ~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~i--------------------wd~~~~~~~-~~~~~--~h~~~V~ 295 (415)
+.+..+..|.-.-..+.|. ++.++.+. |-|.. .|-.+++-. .+++. -+.-.|.
T Consensus 152 qrvgE~~t~GiGpHev~lm~DGrtlvvan--GGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiR 229 (366)
T COG3490 152 QRVGEFSTHGIGPHEVTLMADGRTLVVAN--GGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIR 229 (366)
T ss_pred ceecccccCCcCcceeEEecCCcEEEEeC--CceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhccee
Confidence 4566777777667777776 45555542 22332 332222210 01111 2344578
Q ss_pred EEEEeCCCCEEEEEeCCCc-----EEEEECCCCceeEEecc-------CCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEE
Q 014934 296 GLKWSYDNRELASGGNDNR-----LFVWNQHSTQPVLKYCE-------HTAAVKAIAWSPHLHGLLASGGGTADRCIRFW 363 (415)
Q Consensus 296 ~l~~spdg~~lasg~~dg~-----I~iwd~~~~~~~~~~~~-------h~~~V~~l~~sp~~~~llasggg~~d~~I~iw 363 (415)
.++..+||..++-+-..|. -.|=-...++++.-+.- ....|-+|+.+.+...+.+++- ..+...+|
T Consensus 230 Hld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP--~GN~~vi~ 307 (366)
T COG3490 230 HLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSP--RGNRAVIW 307 (366)
T ss_pred eeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecC--CCCeEEEE
Confidence 8888888877666543331 11112223444433321 2345777888877665666654 67788999
Q ss_pred ECCCCcEEEEeeCCCCEEEEEECCCCCeEEEEEecCCCcEEEEEC
Q 014934 364 NTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRY 408 (415)
Q Consensus 364 d~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~ 408 (415)
|..+|..+.... -..++.+.-...| ++++ +.+|.|.++.-
T Consensus 308 da~tG~vv~~a~-l~daaGva~~~~g--f~vs--sg~G~~~~~s~ 347 (366)
T COG3490 308 DAATGAVVSEAA-LPDAAGVAAAKGG--FAVS--SGQGRIIFYSR 347 (366)
T ss_pred EcCCCcEEeccc-ccccccceeccCc--eEEe--cCCceEEeccc
Confidence 999998876542 2233444444444 3332 23677776643
No 396
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.27 E-value=0.34 Score=48.89 Aligned_cols=175 Identities=13% Similarity=0.257 Sum_probs=105.5
Q ss_pred CCeEEEEEcCCCCeEE-EEE--CCCcEEEEECCCCeeeEEecCCCccEEEEEeeC------CEEEEEeCCCcEEEEECCC
Q 014934 209 DSVCSVGWANRNTHLA-VGT--SHGKVQIWDASRCKRVRTMEGHRLRVGALAWSS------SLLSSGSRDKSILQRDIRA 279 (415)
Q Consensus 209 ~~V~~v~~sp~g~~la-~g~--~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~~------~~l~sgs~dg~I~iwd~~~ 279 (415)
-+|..++|. ||+.++ +.- .+|.+++=| .+.+..| ..|..+.|.+ --|++....+.|.+|.+..
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCccccCC---ccEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 378889997 665444 322 344444322 2334333 4588999973 2466667788899999863
Q ss_pred CC----ccEEEeccc-cC----CeEEEEEeCCCCEEEEEeCCCcEEEEECCCCc--eeEEeccCCCcEEEEEEcCCCCcE
Q 014934 280 QE----DFVSKLSGH-KS----EVCGLKWSYDNRELASGGNDNRLFVWNQHSTQ--PVLKYCEHTAAVKAIAWSPHLHGL 348 (415)
Q Consensus 280 ~~----~~~~~~~~h-~~----~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~--~~~~~~~h~~~V~~l~~sp~~~~l 348 (415)
.. +.+.....+ .. --.++.|+|....|++-.....-.+++++... ...-+ .-.+.|.|.+|.+||..|
T Consensus 92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi-~~~G~IhCACWT~DG~RL 170 (671)
T PF15390_consen 92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADI-KTSGLIHCACWTKDGQRL 170 (671)
T ss_pred CccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEec-cCCceEEEEEecCcCCEE
Confidence 21 111111111 11 12467899999998886665544556655332 22233 456789999999999988
Q ss_pred EEEEcCCCCCeEEEEECCCCcEE-----EEeeCCCCEEEEEECCCCCeEEE
Q 014934 349 LASGGGTADRCIRFWNTTTNTHL-----SCMDTGSQVCNLVWSKNVNELVS 394 (415)
Q Consensus 349 lasggg~~d~~I~iwd~~t~~~~-----~~~~~~~~V~~l~~s~~~~~l~s 394 (415)
+++-| ..=.-++||-...... -.++.++.|+++.-.-+.+..++
T Consensus 171 VVAvG--SsLHSyiWd~~qKtL~~CsfcPVFdv~~~Icsi~AT~dsqVAva 219 (671)
T PF15390_consen 171 VVAVG--SSLHSYIWDSAQKTLHRCSFCPVFDVGGYICSIEATVDSQVAVA 219 (671)
T ss_pred EEEeC--CeEEEEEecCchhhhhhCCcceeecCCCceEEEEEeccceEEEE
Confidence 88775 4556789986543211 13456778888777666554443
No 397
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=96.18 E-value=0.21 Score=52.92 Aligned_cols=94 Identities=14% Similarity=0.159 Sum_probs=56.1
Q ss_pred CCCeEEEEEcCCCCeEEEEECCCcEEEEEC-CCCeeeEEecCCCccEEEEEeeCCEEEEEeCCCcEEEEECCCCCccEEE
Q 014934 208 DDSVCSVGWANRNTHLAVGTSHGKVQIWDA-SRCKRVRTMEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSK 286 (415)
Q Consensus 208 ~~~V~~v~~sp~g~~la~g~~dg~V~iwd~-~~~~~~~~l~~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~ 286 (415)
...|..|.++++|.+||..+..|. .|..+ +.......+.+....|.|-.+. +... . .
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~v-~V~~LP~r~g~~~~~~~g~~~i~Crt~~-----------------v~~~---~-~ 141 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRGV-VVLELPRRWGKNGEFEDGKKEINCRTVP-----------------VDER---F-F 141 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCcE-EEEEeccccCccccccCCCcceeEEEEE-----------------echh---h-c
Confidence 457889999999999999888764 44444 2222222333333333332221 1100 0 1
Q ss_pred eccccCCeEEEEEeCC---CCEEEEEeCCCcEEEEECCCC
Q 014934 287 LSGHKSEVCGLKWSYD---NRELASGGNDNRLFVWNQHST 323 (415)
Q Consensus 287 ~~~h~~~V~~l~~spd---g~~lasg~~dg~I~iwd~~~~ 323 (415)
...+...|..+.|+|. +..|++-..|+.+++||+...
T Consensus 142 ~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 142 TSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred cCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence 1123456778888885 578888888899999988653
No 398
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.13 E-value=0.012 Score=52.23 Aligned_cols=140 Identities=19% Similarity=0.126 Sum_probs=80.2
Q ss_pred cEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCe-eeEEecCCCccEEEEE
Q 014934 179 NVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCK-RVRTMEGHRLRVGALA 257 (415)
Q Consensus 179 ~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~-~~~~l~~h~~~V~~l~ 257 (415)
.+++.+.++.|.-+++...+....-..-+... .....-+..+++|+.+|.|.+|...... ....+..-...|-++.
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~I 108 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRSERFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGI 108 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhhhhhhhcc---eeecccCceEEeecccceEEEecCCccchHHHhhhcccccceecc
Confidence 45666666766666654332211111111111 1112235679999999999999876321 1112222234454544
Q ss_pred ee---CCEEEEEeCCCcEEEEECCCCCccEEEecccc-CCeEEEEEeCCCCEEEEE--eCCCcEEEEECCC
Q 014934 258 WS---SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHK-SEVCGLKWSYDNRELASG--GNDNRLFVWNQHS 322 (415)
Q Consensus 258 ~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~-~~V~~l~~spdg~~lasg--~~dg~I~iwd~~~ 322 (415)
.. +.+.++++.||.|+.|++.-.. .+.....|. ..+..+..+..++.++.+ +.|..++.|++..
T Consensus 109 p~~~~~~~~c~~~~dg~ir~~n~~p~k-~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 109 PNGRDSSLGCVGAQDGRIRACNIKPNK-VLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred ccccccceeEEeccCCceeeeccccCc-eeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 44 3488999999999999997665 344445555 445555555556666666 6666677776643
No 399
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.11 E-value=0.22 Score=50.16 Aligned_cols=144 Identities=17% Similarity=0.284 Sum_probs=83.9
Q ss_pred ccEEEEEee-CCE-EEEEe--CCCcEEEEECCCCCccEEEeccccCCeEEEEEeCC----C-CEEEEEeCCCcEEEEECC
Q 014934 251 LRVGALAWS-SSL-LSSGS--RDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYD----N-RELASGGNDNRLFVWNQH 321 (415)
Q Consensus 251 ~~V~~l~~~-~~~-l~sgs--~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd----g-~~lasg~~dg~I~iwd~~ 321 (415)
.++..++|. |+. +++.- .+|.+++=|- ..+ +.-..|+++.|.|- - .+||+ -....|.||-+.
T Consensus 20 HPvhGlaWTDGkqVvLT~L~l~~gE~kfGds----~vi----GqFEhV~GlsW~P~~~~~~paLLAV-QHkkhVtVWqL~ 90 (671)
T PF15390_consen 20 HPVHGLAWTDGKQVVLTDLQLHNGEPKFGDS----KVI----GQFEHVHGLSWAPPCTADTPALLAV-QHKKHVTVWQLC 90 (671)
T ss_pred ccccceEecCCCEEEEEeeeeeCCccccCCc----cEe----eccceeeeeeecCcccCCCCceEEE-eccceEEEEEec
Confidence 478899997 443 33331 2333333221 122 22345999999984 2 34555 456789999975
Q ss_pred -----CCceeEEeccCC-C----cEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCC--cEEEEeeCCCCEEEEEECCCC
Q 014934 322 -----STQPVLKYCEHT-A----AVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTN--THLSCMDTGSQVCNLVWSKNV 389 (415)
Q Consensus 322 -----~~~~~~~~~~h~-~----~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~--~~~~~~~~~~~V~~l~~s~~~ 389 (415)
..+.+..-..+- . --..+.|+|... +|+.-. ....-.++++... .....++..+.|.+.+|.+||
T Consensus 91 ~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~-iL~VLT--~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG 167 (671)
T PF15390_consen 91 PSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKA-ILTVLT--ARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDG 167 (671)
T ss_pred cCccccccceeeeeeeccCCcccCCCcccccCCCc-eEEEEe--cCceeEeeeeeeCCceEEEeccCCceEEEEEecCcC
Confidence 223332221111 1 124678999987 554432 2333345566543 334455678889999999999
Q ss_pred CeEEEEEecCCCcEEEEE
Q 014934 390 NELVSTHGYSQNQIIVWR 407 (415)
Q Consensus 390 ~~l~s~~g~~dg~I~vw~ 407 (415)
+.|+++.|+ .=.-+|||
T Consensus 168 ~RLVVAvGS-sLHSyiWd 184 (671)
T PF15390_consen 168 QRLVVAVGS-SLHSYIWD 184 (671)
T ss_pred CEEEEEeCC-eEEEEEec
Confidence 999997664 22445666
No 400
>PHA03098 kelch-like protein; Provisional
Probab=96.07 E-value=0.23 Score=51.25 Aligned_cols=184 Identities=12% Similarity=0.052 Sum_probs=90.2
Q ss_pred CCCCeEEEEECCC------cEEEEECCCCeeeE--EecCCCccEEEEEeeCCEEEEEeCCC-----cEEEEECCCCCccE
Q 014934 218 NRNTHLAVGTSHG------KVQIWDASRCKRVR--TMEGHRLRVGALAWSSSLLSSGSRDK-----SILQRDIRAQEDFV 284 (415)
Q Consensus 218 p~g~~la~g~~dg------~V~iwd~~~~~~~~--~l~~h~~~V~~l~~~~~~l~sgs~dg-----~I~iwd~~~~~~~~ 284 (415)
.++..+++|+.++ .+..||..+.+-.. .+.........+...+.+++.||.++ .+..||..+.. .
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~--W 370 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESK--W 370 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCc--e
Confidence 3566677776543 57788887654322 12212223344455577778888653 47778887654 1
Q ss_pred EEecc--ccCCeEEEEEeCCCCEEEEEeCC------CcEEEEECCCCceeEE--eccCCCcEEEEEEcCCCCcEEEEEcC
Q 014934 285 SKLSG--HKSEVCGLKWSYDNRELASGGND------NRLFVWNQHSTQPVLK--YCEHTAAVKAIAWSPHLHGLLASGGG 354 (415)
Q Consensus 285 ~~~~~--h~~~V~~l~~spdg~~lasg~~d------g~I~iwd~~~~~~~~~--~~~h~~~V~~l~~sp~~~~llasggg 354 (415)
..... +...-.+++ .-++++++.||.+ +.+..||..+.+-... +....... +++. -+ ..+++.||.
T Consensus 371 ~~~~~lp~~r~~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~-~~~~-~~-~~iyv~GG~ 446 (534)
T PHA03098 371 REEPPLIFPRYNPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGG-CAIY-HD-GKIYVIGGI 446 (534)
T ss_pred eeCCCcCcCCccceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCc-eEEE-EC-CEEEEECCc
Confidence 11111 111111122 2367777777732 4588999876543211 11111111 1222 23 347777752
Q ss_pred CCC------CeEEEEECCCCcEEEEee--CC-CCEEEEEECCCCCeEEEEEecCC-----CcEEEEECCCC
Q 014934 355 TAD------RCIRFWNTTTNTHLSCMD--TG-SQVCNLVWSKNVNELVSTHGYSQ-----NQIIVWRYPTM 411 (415)
Q Consensus 355 ~~d------~~I~iwd~~t~~~~~~~~--~~-~~V~~l~~s~~~~~l~s~~g~~d-----g~I~vw~~~s~ 411 (415)
... ..+.+||..+++-...-. .. .....+.+ +++.++. |+.+ +.|.+||..+.
T Consensus 447 ~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~--GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 447 SYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVV--GGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred cCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEE--cCCcCCcccceeEEEeCCCC
Confidence 211 238889988765432211 11 11111222 4555454 4432 46788887653
No 401
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.03 E-value=0.025 Score=37.37 Aligned_cols=37 Identities=16% Similarity=0.487 Sum_probs=31.5
Q ss_pred eCCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCCccc
Q 014934 375 DTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKV 414 (415)
Q Consensus 375 ~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~~l 414 (415)
...+.|..++|+|....|+. |+.+|.|.++++ +++++
T Consensus 9 ~l~~~v~~~~w~P~mdLiA~--~t~~g~v~v~Rl-~~qri 45 (47)
T PF12894_consen 9 NLPSRVSCMSWCPTMDLIAL--GTEDGEVLVYRL-NWQRI 45 (47)
T ss_pred CCCCcEEEEEECCCCCEEEE--EECCCeEEEEEC-CCcCc
Confidence 34567999999999999999 889999999999 66654
No 402
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.02 E-value=0.23 Score=51.43 Aligned_cols=109 Identities=16% Similarity=0.295 Sum_probs=72.9
Q ss_pred CeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEec-cCCCcEEEEEEc--CCCCcEEEEEcCCCCCeEEEEECC---
Q 014934 293 EVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYC-EHTAAVKAIAWS--PHLHGLLASGGGTADRCIRFWNTT--- 366 (415)
Q Consensus 293 ~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~-~h~~~V~~l~~s--p~~~~llasggg~~d~~I~iwd~~--- 366 (415)
...-+.-+.-++.-++-+....+.|||.+.+....+-. ...+.|.++.|. |++..+|+.| ....|.++--.
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVG---f~~~v~l~~Q~R~d 107 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVG---FPHHVLLYTQLRYD 107 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEE---cCcEEEEEEccchh
Confidence 33444444444444444444579999999886543322 457789999885 6788788887 68888888542
Q ss_pred ------CCcEEEEee----CCCCEEEEEECCCCCeEEEEEecCCCcEEEEEC
Q 014934 367 ------TNTHLSCMD----TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRY 408 (415)
Q Consensus 367 ------t~~~~~~~~----~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~ 408 (415)
+-..+..++ +..+|....|.++|..++.+ .+++.|++-
T Consensus 108 y~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s----GNqlfv~dk 155 (631)
T PF12234_consen 108 YTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS----GNQLFVFDK 155 (631)
T ss_pred hhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEe----CCEEEEECC
Confidence 123445553 45789999999999876652 468888873
No 403
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.92 E-value=1.4 Score=40.87 Aligned_cols=203 Identities=13% Similarity=0.117 Sum_probs=121.6
Q ss_pred CCCCCCCCceeccCCCCCCCcceeEeecCC-C-cEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEE
Q 014934 148 PRKVPRSPYKILDAPALQDDFYLNLVDWSS-H-NVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAV 225 (415)
Q Consensus 148 ~r~i~~~p~~~ld~~~l~~~~~i~~l~ws~-~-~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~ 225 (415)
.+.++..+..+-..|-....--+..+.|+| . .++++.....-.+|=...|++++.+.+..-...-.|+|..+|++.++
T Consensus 66 ~~~l~~y~~~i~akpi~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~ 145 (316)
T COG3204 66 ARYLLEYRARIDAKPILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIV 145 (316)
T ss_pred hhccCCceEEEeccccccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEE
Confidence 334444444443333333344488999999 4 45566666666667667889988887754455677888888888888
Q ss_pred EECCCcEEEEECCCCeeeEE-------ec--CC-CccEEEEEee--CCEEEEEeCCCcEEEEECCCCCcc--EEEeccc-
Q 014934 226 GTSHGKVQIWDASRCKRVRT-------ME--GH-RLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDF--VSKLSGH- 290 (415)
Q Consensus 226 g~~dg~V~iwd~~~~~~~~~-------l~--~h-~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~--~~~~~~h- 290 (415)
--.++.+.++.+.....+.. +. .+ ....-.++|+ .+.|+.+-.-.-+.|+.+...... ++....+
T Consensus 146 dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~ 225 (316)
T COG3204 146 DERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPT 225 (316)
T ss_pred ehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcc
Confidence 77788888887765422211 11 12 4567789998 366777666666666655433211 1111122
Q ss_pred ------cCCeEEEEEeC-CCCEEEEEeCCCcEEEEECCCCceeEEeccCC---------CcEEEEEEcCCCCcEEEEE
Q 014934 291 ------KSEVCGLKWSY-DNRELASGGNDNRLFVWNQHSTQPVLKYCEHT---------AAVKAIAWSPHLHGLLASG 352 (415)
Q Consensus 291 ------~~~V~~l~~sp-dg~~lasg~~dg~I~iwd~~~~~~~~~~~~h~---------~~V~~l~~sp~~~~llasg 352 (415)
-..|.++.|++ .+.+|+-+.+++.|.-.|... .++..+.-+. ...-.|+..++|. |++++
T Consensus 226 ~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G-~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~-lYIvS 301 (316)
T COG3204 226 ADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSG-EVIELLSLTKGNHGLSSDIPQAEGIAMDDDGN-LYIVS 301 (316)
T ss_pred cccceEeeccccceecCCCCcEEEEecCCceEEEEecCC-CeeeeEEeccCCCCCcccCCCcceeEECCCCC-EEEEe
Confidence 13478888886 556667777888888888653 3333332111 1234567776665 44433
No 404
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.78 E-value=0.42 Score=42.07 Aligned_cols=164 Identities=15% Similarity=0.118 Sum_probs=104.5
Q ss_pred CCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEE-EEECCCcEEEEECCCCeeeEEecCCCccEEEEEeeCCEEE
Q 014934 186 GNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLA-VGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWSSSLLS 264 (415)
Q Consensus 186 d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la-~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~~~~l~ 264 (415)
...|+.||+.+++......+. ...+..=-...-|+++. -.-.+|....+|..+.+++..+. ..+.-+.++..+..|+
T Consensus 67 ~S~ir~~~L~~gq~~~s~~l~-~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~-y~GeGWgLt~d~~~Li 144 (262)
T COG3823 67 FSKIRVSDLTTGQEIFSEKLA-PDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS-YEGEGWGLTSDDKNLI 144 (262)
T ss_pred cceeEEEeccCceEEEEeecC-CccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc-cCCcceeeecCCcceE
Confidence 357999999999887766554 12333222222233332 23568888999999988887776 4566778888877788
Q ss_pred EEeCCCcEEEEECCCCCc---cEEEeccc-cCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEec----------
Q 014934 265 SGSRDKSILQRDIRAQED---FVSKLSGH-KSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYC---------- 330 (415)
Q Consensus 265 sgs~dg~I~iwd~~~~~~---~~~~~~~h-~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~---------- 330 (415)
.++...++...|..+... ......+. -..++-+.|- ||...|-.=.+..|...|..+|+.+..+.
T Consensus 145 msdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~ 223 (262)
T COG3823 145 MSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNL 223 (262)
T ss_pred eeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCc
Confidence 877777888877765431 11122221 1123344443 66666666566666667777776654442
Q ss_pred --cCCCcEEEEEEcCCCCcEEEEE
Q 014934 331 --EHTAAVKAIAWSPHLHGLLASG 352 (415)
Q Consensus 331 --~h~~~V~~l~~sp~~~~llasg 352 (415)
.|..-.+.||+.|.+..++++|
T Consensus 224 ~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 224 DKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred cccccccccceeecCcCCeEEEec
Confidence 2444568899999998888887
No 405
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.78 E-value=3.5 Score=44.28 Aligned_cols=191 Identities=14% Similarity=0.111 Sum_probs=110.2
Q ss_pred CCeEEEEECCCcEEEEECCCCeeeEEecCCCc--------cEEEEEe------------------eCCEEEEEeCCCcEE
Q 014934 220 NTHLAVGTSHGKVQIWDASRCKRVRTMEGHRL--------RVGALAW------------------SSSLLSSGSRDKSIL 273 (415)
Q Consensus 220 g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~~--------~V~~l~~------------------~~~~l~sgs~dg~I~ 273 (415)
+..|.+++.++.|.-.|..+++.+=.+..... .+..+++ ++..++.++.|+.++
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 55677777788888888888877665542211 0111222 234788899999999
Q ss_pred EEECCCCCccEEEeccccCCeE-------------EEEEeC--CCCEEEEEeC----------CCcEEEEECCCCceeEE
Q 014934 274 QRDIRAQEDFVSKLSGHKSEVC-------------GLKWSY--DNRELASGGN----------DNRLFVWNQHSTQPVLK 328 (415)
Q Consensus 274 iwd~~~~~~~~~~~~~h~~~V~-------------~l~~sp--dg~~lasg~~----------dg~I~iwd~~~~~~~~~ 328 (415)
-.|.++++.+ ..+. ..+.|. .+.-.| .+..+++|+. +|.|+-+|+++++.+.+
T Consensus 274 ALDA~TGk~~-W~fg-~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~ 351 (764)
T TIGR03074 274 ALDADTGKLC-EDFG-NNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWA 351 (764)
T ss_pred EEECCCCCEE-EEec-CCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeE
Confidence 9999988743 2221 111111 111122 2345666643 68899999999999887
Q ss_pred eccC---------CC--------cE-EEEEEcCCCCcEEEEEc---------------CCCCCeEEEEECCCCcEEEEee
Q 014934 329 YCEH---------TA--------AV-KAIAWSPHLHGLLASGG---------------GTADRCIRFWNTTTNTHLSCMD 375 (415)
Q Consensus 329 ~~~h---------~~--------~V-~~l~~sp~~~~llasgg---------------g~~d~~I~iwd~~t~~~~~~~~ 375 (415)
+..- .+ .+ ...++.+....+++-.| ....+.|.-.|..||+....++
T Consensus 352 ~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q 431 (764)
T TIGR03074 352 WDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQ 431 (764)
T ss_pred EecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEec
Confidence 7421 00 01 12344444332222111 0124567778889999877665
Q ss_pred C-C---------CCEEEEEECC-CCC---eEEEEEecCCCcEEEEECCCCccc
Q 014934 376 T-G---------SQVCNLVWSK-NVN---ELVSTHGYSQNQIIVWRYPTMSKV 414 (415)
Q Consensus 376 ~-~---------~~V~~l~~s~-~~~---~l~s~~g~~dg~I~vw~~~s~~~l 414 (415)
+ . .+..=+.+.. +|+ .++. +..+|.+.+.|-.+++.+
T Consensus 432 ~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~--~~K~G~~~vlDr~tG~~l 482 (764)
T TIGR03074 432 TVHHDLWDMDVPAQPSLVDLPDADGTTVPALVA--PTKQGQIYVLDRRTGEPI 482 (764)
T ss_pred ccCCccccccccCCceEEeeecCCCcEeeEEEE--ECCCCEEEEEECCCCCEE
Confidence 3 1 1122222333 553 3444 889999999999988764
No 406
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.76 E-value=0.86 Score=40.88 Aligned_cols=143 Identities=12% Similarity=0.052 Sum_probs=87.1
Q ss_pred CCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEecCCC--------ccEEEEEeeC---CEEEEEeCCCcEEEEE-
Q 014934 209 DSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHR--------LRVGALAWSS---SLLSSGSRDKSILQRD- 276 (415)
Q Consensus 209 ~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~--------~~V~~l~~~~---~~l~sgs~dg~I~iwd- 276 (415)
.....-..+|+|++. .|...-.=.++....+....-+.+|. .--+.++|+. .+.++-+.+-+|.-||
T Consensus 109 nR~NDgkvdP~Gryy-~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dy 187 (310)
T KOG4499|consen 109 NRLNDGKVDPDGRYY-GGTMADFGDDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDY 187 (310)
T ss_pred cccccCccCCCCcee-eeeeccccccccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceEEeeeec
Confidence 445566778999984 34432111122222222222233332 2335677872 3556667777787777
Q ss_pred -CCCCC----ccEEEecc----ccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCC-C
Q 014934 277 -IRAQE----DFVSKLSG----HKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHL-H 346 (415)
Q Consensus 277 -~~~~~----~~~~~~~~----h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~-~ 346 (415)
..++. ..+..+.. ....--+++...+|++.++.-+.++|...|..+++.+.++.-....|++++|---+ .
T Consensus 188 d~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGkn~d 267 (310)
T KOG4499|consen 188 DCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGKNLD 267 (310)
T ss_pred CCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCCCcc
Confidence 44332 12222221 12234566777789999999999999999999999999999889999999997432 2
Q ss_pred cEEEEE
Q 014934 347 GLLASG 352 (415)
Q Consensus 347 ~llasg 352 (415)
.+++++
T Consensus 268 ~~yvT~ 273 (310)
T KOG4499|consen 268 ILYVTT 273 (310)
T ss_pred EEEEEe
Confidence 344544
No 407
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.73 E-value=2.3 Score=41.87 Aligned_cols=210 Identities=10% Similarity=0.118 Sum_probs=100.3
Q ss_pred CCeEEeEecCCC-CCeEEEEEc-----------CCCCeEEEEE-CCCcEEEEECCC----CeeeEEecC---CC------
Q 014934 197 SKVTKLCDLGID-DSVCSVGWA-----------NRNTHLAVGT-SHGKVQIWDASR----CKRVRTMEG---HR------ 250 (415)
Q Consensus 197 ~~~~~~~~~~~~-~~V~~v~~s-----------p~g~~la~g~-~dg~V~iwd~~~----~~~~~~l~~---h~------ 250 (415)
++++..+...+. ++....-|+ .+.++|++.+ .++.|.|+|+.+ .+..++++. +.
T Consensus 52 gqVIhrl~mp~~GDElHH~GWNaCSsc~~~~~~~~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~ 131 (461)
T PF05694_consen 52 GQVIHRLPMPNRGDELHHSGWNACSSCHYGDPSKERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSR 131 (461)
T ss_dssp TSEEEEEE-SSS---B---EES--GGSTT--TT--S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEE
T ss_pred ccEEEEEeCCCCCCccccccCcccccccCCCCcccCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCC
Confidence 466666665543 566666665 2345666665 688999999974 345555542 11
Q ss_pred -ccEEEEEeeCCEEEEEe--CC----CcEEEEECCCCCccEEEecccc---CCeEEEEEeCCCCEEEEEeC---------
Q 014934 251 -LRVGALAWSSSLLSSGS--RD----KSILQRDIRAQEDFVSKLSGHK---SEVCGLKWSYDNRELASGGN--------- 311 (415)
Q Consensus 251 -~~V~~l~~~~~~l~sgs--~d----g~I~iwd~~~~~~~~~~~~~h~---~~V~~l~~spdg~~lasg~~--------- 311 (415)
..+.|+. ++++++++- .+ |-+.+.|-++.+ ......... .--..+-|.|..+.++|...
T Consensus 132 PHT~Hclp-~G~imIS~lGd~~G~g~Ggf~llD~~tf~-v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~G 209 (461)
T PF05694_consen 132 PHTVHCLP-DGRIMISALGDADGNGPGGFVLLDGETFE-VKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKG 209 (461)
T ss_dssp EEEEEE-S-S--EEEEEEEETTS-S--EEEEE-TTT---EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT-
T ss_pred CceeeecC-CccEEEEeccCCCCCCCCcEEEEcCcccc-ccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccC
Confidence 1122222 245666642 22 347777777654 344443321 23456778888888887532
Q ss_pred -----------CCcEEEEECCCCceeEEeccCC--CcEEEEEEc--CCCCcEEEEEcCCCCCeEEEE-ECCCCcE----E
Q 014934 312 -----------DNRLFVWNQHSTQPVLKYCEHT--AAVKAIAWS--PHLHGLLASGGGTADRCIRFW-NTTTNTH----L 371 (415)
Q Consensus 312 -----------dg~I~iwd~~~~~~~~~~~~h~--~~V~~l~~s--p~~~~llasggg~~d~~I~iw-d~~t~~~----~ 371 (415)
-.+|.+||+.+.+.++++.--. ..+..|.|. |...+=++.+. ....|..| ....++- +
T Consensus 210 f~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~a--Lss~i~~~~k~~~g~W~a~kV 287 (461)
T PF05694_consen 210 FNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCA--LSSSIWRFYKDDDGEWAAEKV 287 (461)
T ss_dssp --TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE----EEEEEEEE-ETTEEEEEEE
T ss_pred CChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEe--ccceEEEEEEcCCCCeeeeEE
Confidence 3479999999999999986432 235566664 44444444443 45555544 3344431 1
Q ss_pred EEeeC------------------CCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCC
Q 014934 372 SCMDT------------------GSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTM 411 (415)
Q Consensus 372 ~~~~~------------------~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~ 411 (415)
-.+.. ..-|+.+..|.|.++|..+ ....|.|+.||+...
T Consensus 288 i~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs-~W~~GdvrqYDISDP 344 (461)
T PF05694_consen 288 IDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVS-NWLHGDVRQYDISDP 344 (461)
T ss_dssp EEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEE-ETTTTEEEEEE-SST
T ss_pred EECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEE-cccCCcEEEEecCCC
Confidence 12211 2347899999999999887 578999999999764
No 408
>PHA02790 Kelch-like protein; Provisional
Probab=95.69 E-value=0.75 Score=46.79 Aligned_cols=171 Identities=14% Similarity=0.066 Sum_probs=88.0
Q ss_pred eEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECC--CcEEEEECCCCe--eeEEecCCCccEEEEEeeCCEE
Q 014934 188 CVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSH--GKVQIWDASRCK--RVRTMEGHRLRVGALAWSSSLL 263 (415)
Q Consensus 188 ~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~d--g~V~iwd~~~~~--~~~~l~~h~~~V~~l~~~~~~l 263 (415)
.+..||..+++............-.+++ .-+|...++|+.+ ..+..||..+++ .+..+.........+..++.+.
T Consensus 288 ~v~~Ydp~~~~W~~~~~m~~~r~~~~~v-~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IY 366 (480)
T PHA02790 288 NAIAVNYISNNWIPIPPMNSPRLYASGV-PANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIY 366 (480)
T ss_pred eEEEEECCCCEEEECCCCCchhhcceEE-EECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEE
Confidence 5788998887766554432211112222 2467788888764 358889876643 2223332222334445567777
Q ss_pred EEEeCCC---cEEEEECCCCCccEEEecc---ccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeE--EeccCCCc
Q 014934 264 SSGSRDK---SILQRDIRAQEDFVSKLSG---HKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVL--KYCEHTAA 335 (415)
Q Consensus 264 ~sgs~dg---~I~iwd~~~~~~~~~~~~~---h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~--~~~~h~~~ 335 (415)
+.||.++ .+..||.++.. ...... .......+ .-++.+.+.|+ .+.+||..+.+-.. .+......
T Consensus 367 viGG~~~~~~~ve~ydp~~~~--W~~~~~m~~~r~~~~~~--~~~~~IYv~GG---~~e~ydp~~~~W~~~~~m~~~r~~ 439 (480)
T PHA02790 367 VIGGHSETDTTTEYLLPNHDQ--WQFGPSTYYPHYKSCAL--VFGRRLFLVGR---NAEFYCESSNTWTLIDDPIYPRDN 439 (480)
T ss_pred EecCcCCCCccEEEEeCCCCE--EEeCCCCCCccccceEE--EECCEEEEECC---ceEEecCCCCcEeEcCCCCCCccc
Confidence 8887654 46788887654 111111 11111222 23566777774 47789987654322 12111122
Q ss_pred EEEEEEcCCCCcEEEEEcCCC---CCeEEEEECCCCc
Q 014934 336 VKAIAWSPHLHGLLASGGGTA---DRCIRFWNTTTNT 369 (415)
Q Consensus 336 V~~l~~sp~~~~llasggg~~---d~~I~iwd~~t~~ 369 (415)
...+. . ++ .+++.||... -..+..||..+++
T Consensus 440 ~~~~v-~-~~-~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 440 PELII-V-DN-KLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred cEEEE-E-CC-EEEEECCcCCCcccceEEEEECCCCe
Confidence 22222 2 33 4888876211 1346666666554
No 409
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.64 E-value=1.8 Score=40.00 Aligned_cols=215 Identities=15% Similarity=0.131 Sum_probs=125.4
Q ss_pred CCCeEEeEecCCCCCeEEEEEcCCC-CeEEEEECCCc-EEEEECCCCeeeEEecCCCcc--EEEEEee--CCEEEEEeCC
Q 014934 196 SSKVTKLCDLGIDDSVCSVGWANRN-THLAVGTSHGK-VQIWDASRCKRVRTMEGHRLR--VGALAWS--SSLLSSGSRD 269 (415)
Q Consensus 196 ~~~~~~~~~~~~~~~V~~v~~sp~g-~~la~g~~dg~-V~iwd~~~~~~~~~l~~h~~~--V~~l~~~--~~~l~sgs~d 269 (415)
.|+++....+ ......|+++|.- .-++.+-.-|+ ..++|....+...++....++ -..=.|+ +.+|...-.|
T Consensus 57 aGk~v~~~~l--paR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEnd 134 (366)
T COG3490 57 AGKIVFATAL--PARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATEND 134 (366)
T ss_pred CCceeeeeec--ccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCC
Confidence 3555444433 2445667888854 45666666565 578888877665555322111 1112344 5666665443
Q ss_pred -----CcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeC------C-C-----------cEEEEECCCCcee
Q 014934 270 -----KSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGN------D-N-----------RLFVWNQHSTQPV 326 (415)
Q Consensus 270 -----g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~------d-g-----------~I~iwd~~~~~~~ 326 (415)
|.|-+||.+..-..+..+..|.-.-..+.|.+||+.|+.+.. | | .+.+.|..++..+
T Consensus 135 fd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~li 214 (366)
T COG3490 135 FDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLI 214 (366)
T ss_pred CCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchh
Confidence 679999999776667778888888889999999999988643 0 1 2333444444443
Q ss_pred EEec----cCCCcEEEEEEcCCCCcEEEEEc---CCCCCeEEEEECCCCcEEEEeeC--------CCCEEEEEECCCCCe
Q 014934 327 LKYC----EHTAAVKAIAWSPHLHGLLASGG---GTADRCIRFWNTTTNTHLSCMDT--------GSQVCNLVWSKNVNE 391 (415)
Q Consensus 327 ~~~~----~h~~~V~~l~~sp~~~~llasgg---g~~d~~I~iwd~~t~~~~~~~~~--------~~~V~~l~~s~~~~~ 391 (415)
.+.. .+.-.|..++.-++|. +++.+- ...|---.+=-...|+.+.-++. ...|-+++.+.+...
T Consensus 215 ekh~Lp~~l~~lSiRHld~g~dgt-vwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~gl 293 (366)
T COG3490 215 EKHTLPASLRQLSIRHLDIGRDGT-VWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGL 293 (366)
T ss_pred hhccCchhhhhcceeeeeeCCCCc-EEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCe
Confidence 3221 2344577777777776 333221 00111111212233444444432 244677888877666
Q ss_pred EEEEEecCCCcEEEEECCCCccc
Q 014934 392 LVSTHGYSQNQIIVWRYPTMSKV 414 (415)
Q Consensus 392 l~s~~g~~dg~I~vw~~~s~~~l 414 (415)
++.+ .-..|...+||..++.-+
T Consensus 294 V~lT-SP~GN~~vi~da~tG~vv 315 (366)
T COG3490 294 VALT-SPRGNRAVIWDAATGAVV 315 (366)
T ss_pred EEEe-cCCCCeEEEEEcCCCcEE
Confidence 6665 456778899999987643
No 410
>PRK13684 Ycf48-like protein; Provisional
Probab=95.50 E-value=2.5 Score=40.73 Aligned_cols=220 Identities=12% Similarity=0.123 Sum_probs=108.8
Q ss_pred ceeEeecCC-CcEEEEEcCCeEEEEECCCCCe-EEeEe-c-CCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCC---e
Q 014934 169 YLNLVDWSS-HNVLAVGLGNCVYLWNACSSKV-TKLCD-L-GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRC---K 241 (415)
Q Consensus 169 ~i~~l~ws~-~~~la~~~d~~V~iwd~~~~~~-~~~~~-~-~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~---~ 241 (415)
.+..|.|.. ++.+++|.++.|+.= .+.|+. ..... + .....+.++.|.++ ..+++| ..|.|.. ....+ +
T Consensus 47 ~l~~v~F~d~~~g~avG~~G~il~T-~DgG~tW~~~~~~~~~~~~~l~~v~~~~~-~~~~~G-~~g~i~~-S~DgG~tW~ 122 (334)
T PRK13684 47 NLLDIAFTDPNHGWLVGSNRTLLET-NDGGETWEERSLDLPEENFRLISISFKGD-EGWIVG-QPSLLLH-TTDGGKNWT 122 (334)
T ss_pred ceEEEEEeCCCcEEEEECCCEEEEE-cCCCCCceECccCCcccccceeeeEEcCC-cEEEeC-CCceEEE-ECCCCCCCe
Confidence 355566654 777888877655432 222322 22111 1 12234778887643 344544 4444322 11212 2
Q ss_pred eeEE---ecCCCccEEEEEeeCCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEE-
Q 014934 242 RVRT---MEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFV- 317 (415)
Q Consensus 242 ~~~~---l~~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~i- 317 (415)
.+.. +.++. ....+..+..+..++..|.|..-+- .++.-......-...+.++.+.|++.+++++. .|.+..
T Consensus 123 ~~~~~~~~~~~~--~~i~~~~~~~~~~~g~~G~i~~S~D-gG~tW~~~~~~~~g~~~~i~~~~~g~~v~~g~-~G~i~~s 198 (334)
T PRK13684 123 RIPLSEKLPGSP--YLITALGPGTAEMATNVGAIYRTTD-GGKNWEALVEDAAGVVRNLRRSPDGKYVAVSS-RGNFYST 198 (334)
T ss_pred EccCCcCCCCCc--eEEEEECCCcceeeeccceEEEECC-CCCCceeCcCCCcceEEEEEECCCCeEEEEeC-CceEEEE
Confidence 2211 11222 2222333443444455555543322 22222222223345688999999887766654 454443
Q ss_pred EECCCCceeEEe-ccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeC-----CCCEEEEEECCCCCe
Q 014934 318 WNQHSTQPVLKY-CEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDT-----GSQVCNLVWSKNVNE 391 (415)
Q Consensus 318 wd~~~~~~~~~~-~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~-----~~~V~~l~~s~~~~~ 391 (415)
+|- .++.-... ..-...++++++.++++ +++.+ ..|.+++=....|.....+.. ...+..+.+.+++..
T Consensus 199 ~~~-gg~tW~~~~~~~~~~l~~i~~~~~g~-~~~vg---~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~ 273 (334)
T PRK13684 199 WEP-GQTAWTPHQRNSSRRLQSMGFQPDGN-LWMLA---RGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEI 273 (334)
T ss_pred cCC-CCCeEEEeeCCCcccceeeeEcCCCC-EEEEe---cCCEEEEccCCCCCccccccCCccccccceeeEEEcCCCCE
Confidence 222 22222222 23446789999999987 55555 357665433455554433322 234788899998876
Q ss_pred EEEEEecCCCcEE
Q 014934 392 LVSTHGYSQNQII 404 (415)
Q Consensus 392 l~s~~g~~dg~I~ 404 (415)
+++ | .+|.|.
T Consensus 274 ~~~--G-~~G~v~ 283 (334)
T PRK13684 274 WAG--G-GNGTLL 283 (334)
T ss_pred EEE--c-CCCeEE
Confidence 666 4 455443
No 411
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=95.40 E-value=0.017 Score=60.36 Aligned_cols=152 Identities=14% Similarity=0.221 Sum_probs=91.4
Q ss_pred CeEEEEECC--CCCeEEeEec----CCCCCeEEEEEcC---CCCeEEEEECCCcEEEEECCCCeeeEEecCCCccEEEEE
Q 014934 187 NCVYLWNAC--SSKVTKLCDL----GIDDSVCSVGWAN---RNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALA 257 (415)
Q Consensus 187 ~~V~iwd~~--~~~~~~~~~~----~~~~~V~~v~~sp---~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~ 257 (415)
|.+.+|++. .|++...+.+ .....+.-|.|.| +.-++..+..+|.|++..+.+... ..+.+|..++..++
T Consensus 153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a 231 (1283)
T KOG1916|consen 153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMA 231 (1283)
T ss_pred hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHH
Confidence 567777754 3443322221 2234556666665 567888888899998887765433 44556888888887
Q ss_pred ee-CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEEC-----CCCceeEEecc
Q 014934 258 WS-SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQ-----HSTQPVLKYCE 331 (415)
Q Consensus 258 ~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~-----~~~~~~~~~~~ 331 (415)
+- ..++...+ .+|||..||.++.||.++.|-+ ..-++++..+.
T Consensus 232 ~~~~g~~~l~~-------------------------------lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkp 280 (1283)
T KOG1916|consen 232 FFAEGVLKLAS-------------------------------LSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKP 280 (1283)
T ss_pred HHhhchhhhee-------------------------------eCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCC
Confidence 64 22222221 7899999999999997766654 34456677777
Q ss_pred CCCcEE-EEEEcCC-------CCc-EEEEEcCCCCCeEEEEECCCCcEE
Q 014934 332 HTAAVK-AIAWSPH-------LHG-LLASGGGTADRCIRFWNTTTNTHL 371 (415)
Q Consensus 332 h~~~V~-~l~~sp~-------~~~-llasggg~~d~~I~iwd~~t~~~~ 371 (415)
|.+.-. |.-|+.+ +.+ +++++. ...+.+++|.....+|+
T Consensus 281 hd~~p~vC~lc~~~~~~~v~i~~w~~~Ittt-d~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 281 HDKHPRVCWLCHKQEILVVSIGKWVLRITTT-DVNREEKFWAEAPWQCL 328 (1283)
T ss_pred CCCCCceeeeeccccccCCccceeEEEEecc-cCCcceeEeeccchhhh
Confidence 774322 2222221 112 233332 25678999988777665
No 412
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=95.38 E-value=2.6 Score=39.98 Aligned_cols=230 Identities=15% Similarity=0.158 Sum_probs=108.7
Q ss_pred CCCceeccCCCCCCCcceeEeecCC-CcEEEEEcCCeEEEEECCCCCeEEeEecCC----CCCeEEEEEcCCCCeEEEEE
Q 014934 153 RSPYKILDAPALQDDFYLNLVDWSS-HNVLAVGLGNCVYLWNACSSKVTKLCDLGI----DDSVCSVGWANRNTHLAVGT 227 (415)
Q Consensus 153 ~~p~~~ld~~~l~~~~~i~~l~ws~-~~~la~~~d~~V~iwd~~~~~~~~~~~~~~----~~~V~~v~~sp~g~~la~g~ 227 (415)
..+.+.++.|. +..+..|.|.. +.-.++|..+.|. -..+.|+.=....... .-...+|.|.. ...+++|
T Consensus 5 ~~~W~~v~l~t---~~~l~dV~F~d~~~G~~VG~~g~il-~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~-~~g~ivG- 78 (302)
T PF14870_consen 5 GNSWQQVSLPT---DKPLLDVAFVDPNHGWAVGAYGTIL-KTTDGGKTWQPVSLDLDNPFDYHLNSISFDG-NEGWIVG- 78 (302)
T ss_dssp S--EEEEE-S----SS-EEEEEESSSS-EEEEETTTEEE-EESSTTSS-EE-----S-----EEEEEEEET-TEEEEEE-
T ss_pred CCCcEEeecCC---CCceEEEEEecCCEEEEEecCCEEE-EECCCCccccccccCCCccceeeEEEEEecC-CceEEEc-
Confidence 34455555442 33677788876 7778888777543 2333343222221111 12366777754 3344544
Q ss_pred CCCcEEEEECCCCeeeEEec---CCCccEEEE-EeeCCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCC
Q 014934 228 SHGKVQIWDASRCKRVRTME---GHRLRVGAL-AWSSSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDN 303 (415)
Q Consensus 228 ~dg~V~iwd~~~~~~~~~l~---~h~~~V~~l-~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg 303 (415)
..| +.+.-...++.-..+. .-.+....+ +..+......+..|.|+.-. ..+..-......-.+.+..+.-++||
T Consensus 79 ~~g-~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~G~iy~T~-DgG~tW~~~~~~~~gs~~~~~r~~dG 156 (302)
T PF14870_consen 79 EPG-LLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAELAGDRGAIYRTT-DGGKTWQAVVSETSGSINDITRSSDG 156 (302)
T ss_dssp ETT-EEEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEEEETT--EEEES-STTSSEEEEE-S----EEEEEE-TTS
T ss_pred CCc-eEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEcCCCcEEEeC-CCCCCeeEcccCCcceeEeEEECCCC
Confidence 445 3344444443333321 122223333 33455555556666654432 22332333344555778889899999
Q ss_pred CEEEEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEE-CCCCcEEEE----ee-CC
Q 014934 304 RELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWN-TTTNTHLSC----MD-TG 377 (415)
Q Consensus 304 ~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd-~~t~~~~~~----~~-~~ 377 (415)
+++|++..-+.+.-||--...-...-..-...|.++.|.|++. |.+.+ ..+.|++=+ ....+.... +. .+
T Consensus 157 ~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~-lw~~~---~Gg~~~~s~~~~~~~~w~~~~~~~~~~~ 232 (302)
T PF14870_consen 157 RYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGN-LWMLA---RGGQIQFSDDPDDGETWSEPIIPIKTNG 232 (302)
T ss_dssp -EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS--EEEEE---TTTEEEEEE-TTEEEEE---B-TTSS--
T ss_pred cEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCC-EEEEe---CCcEEEEccCCCCccccccccCCcccCc
Confidence 9999987766666787543222222224567899999999976 54444 468888877 223333222 11 23
Q ss_pred CCEEEEEECCCCCeEEE
Q 014934 378 SQVCNLVWSKNVNELVS 394 (415)
Q Consensus 378 ~~V~~l~~s~~~~~l~s 394 (415)
..+..++|.+++...++
T Consensus 233 ~~~ld~a~~~~~~~wa~ 249 (302)
T PF14870_consen 233 YGILDLAYRPPNEIWAV 249 (302)
T ss_dssp S-EEEEEESSSS-EEEE
T ss_pred eeeEEEEecCCCCEEEE
Confidence 34899999999887776
No 413
>PRK13684 Ycf48-like protein; Provisional
Probab=95.29 E-value=3 Score=40.25 Aligned_cols=229 Identities=11% Similarity=0.043 Sum_probs=117.6
Q ss_pred CcceeEeecCCCcEEEEEcCCeEEEEECCCCCeEEeEecC--CCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeE
Q 014934 167 DFYLNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLG--IDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVR 244 (415)
Q Consensus 167 ~~~i~~l~ws~~~~la~~~d~~V~iwd~~~~~~~~~~~~~--~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~ 244 (415)
++.++.+.+.+++.++++..+.|+.- .+.|+.-...... .......+.....+..+++ +..|.|.. ....++.-.
T Consensus 89 ~~~l~~v~~~~~~~~~~G~~g~i~~S-~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~-g~~G~i~~-S~DgG~tW~ 165 (334)
T PRK13684 89 NFRLISISFKGDEGWIVGQPSLLLHT-TDGGKNWTRIPLSEKLPGSPYLITALGPGTAEMA-TNVGAIYR-TTDGGKNWE 165 (334)
T ss_pred ccceeeeEEcCCcEEEeCCCceEEEE-CCCCCCCeEccCCcCCCCCceEEEEECCCcceee-eccceEEE-ECCCCCCce
Confidence 34567777776666677765555443 2233322221111 1112222222222333333 34443322 112232222
Q ss_pred Eec-CCCccEEEEEeeC-CEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCC
Q 014934 245 TME-GHRLRVGALAWSS-SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHS 322 (415)
Q Consensus 245 ~l~-~h~~~V~~l~~~~-~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~ 322 (415)
.+. .-...+.++.+.+ ..++..+..|.+..-.-..+.........-...+.++.+.++++.+++| ..|.+.+=....
T Consensus 166 ~~~~~~~g~~~~i~~~~~g~~v~~g~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~ 244 (334)
T PRK13684 166 ALVEDAAGVVRNLRRSPDGKYVAVSSRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDD 244 (334)
T ss_pred eCcCCCcceEEEEEECCCCeEEEEeCCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCC
Confidence 222 2245677787763 4555556667665421111221222223344678999999999887765 457654323334
Q ss_pred CceeEEecc----CCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeC----CCCEEEEEECCCCCeEEE
Q 014934 323 TQPVLKYCE----HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDT----GSQVCNLVWSKNVNELVS 394 (415)
Q Consensus 323 ~~~~~~~~~----h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~----~~~V~~l~~s~~~~~l~s 394 (415)
+..-..... -...+.++++.|++. +++.+ .+|.|. .....|+....+.. ......+.|..+++.+++
T Consensus 245 G~sW~~~~~~~~~~~~~l~~v~~~~~~~-~~~~G---~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (334)
T PRK13684 245 LESWSKPIIPEITNGYGYLDLAYRTPGE-IWAGG---GNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVL 319 (334)
T ss_pred CCccccccCCccccccceeeEEEcCCCC-EEEEc---CCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEE
Confidence 432222211 123578899999775 66665 467554 44555655444431 235778888888877776
Q ss_pred EEecCCCcEEEEE
Q 014934 395 THGYSQNQIIVWR 407 (415)
Q Consensus 395 ~~g~~dg~I~vw~ 407 (415)
| ..|.|..|+
T Consensus 320 --G-~~G~il~~~ 329 (334)
T PRK13684 320 --G-QRGVLLRYV 329 (334)
T ss_pred --C-CCceEEEec
Confidence 5 678887776
No 414
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=95.13 E-value=3.6 Score=40.23 Aligned_cols=195 Identities=13% Similarity=0.039 Sum_probs=102.8
Q ss_pred CcEEEEEcCCeEEEEECCCCCeEEeEecCC-CCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEecCCCc--cEE
Q 014934 178 HNVLAVGLGNCVYLWNACSSKVTKLCDLGI-DDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRL--RVG 254 (415)
Q Consensus 178 ~~~la~~~d~~V~iwd~~~~~~~~~~~~~~-~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~~--~V~ 254 (415)
+.+.+...++.|+-.|..++...-...... ...+.+-.+..+|+ |.+++.+|.+..+|..+++.+-....... ...
T Consensus 69 g~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~ 147 (370)
T COG1520 69 GTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYAS 147 (370)
T ss_pred CeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEec
Confidence 455555567788888888877543222111 11122222222666 77789999899999988887776665441 111
Q ss_pred EEEeeCCEEEEEeCCCcEEEEECCCCCccEEEecc--ccCCeEEEEEeCCCCEEEEEeC--CCcEEEEECCCCceeEEec
Q 014934 255 ALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLSG--HKSEVCGLKWSYDNRELASGGN--DNRLFVWNQHSTQPVLKYC 330 (415)
Q Consensus 255 ~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~--h~~~V~~l~~spdg~~lasg~~--dg~I~iwd~~~~~~~~~~~ 330 (415)
........+..++.++.+...|..++......... -...+.+-....++ .+..+.. ++.+.-.|..++.......
T Consensus 148 ~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~vy~~~~~~~~~~~a~~~~~G~~~w~~~ 226 (370)
T COG1520 148 PPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASG-TVYVGSDGYDGILYALNAEDGTLKWSQK 226 (370)
T ss_pred CcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecc-eEEEecCCCcceEEEEEccCCcEeeeee
Confidence 11112345555557888888888877632221111 01111111112233 3444444 5677778888887766532
Q ss_pred cCC----CcEEEEEEcCCC-----CcEEEEEcCCCCCeEEEEECCCCcEEEEeeCC
Q 014934 331 EHT----AAVKAIAWSPHL-----HGLLASGGGTADRCIRFWNTTTNTHLSCMDTG 377 (415)
Q Consensus 331 ~h~----~~V~~l~~sp~~-----~~llasggg~~d~~I~iwd~~t~~~~~~~~~~ 377 (415)
.+. ..+........+ ..++. + ..++.+...|..+|+.+......
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~v~v~~~~~~-~--~~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 227 VSQTIGRTAISTTPAVDGGPVYVDGGVYA-G--SYGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred eecccCcccccccccccCceEEECCcEEE-E--ecCCeEEEEEcCCCceEEEEecc
Confidence 111 011001111111 11222 2 25677888899999988887653
No 415
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=95.08 E-value=0.33 Score=48.10 Aligned_cols=141 Identities=15% Similarity=0.142 Sum_probs=93.8
Q ss_pred CCCeEE-EEECCCcEEEEECCCCeeeEEecCCCccEEEEEeeC---------CEEEEEeCCCcEEEEECCCCCccEEEec
Q 014934 219 RNTHLA-VGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWSS---------SLLSSGSRDKSILQRDIRAQEDFVSKLS 288 (415)
Q Consensus 219 ~g~~la-~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~~---------~~l~sgs~dg~I~iwd~~~~~~~~~~~~ 288 (415)
+..+|. .|.....+.-.|++.|+.+.....|... -+.++| ..-++|-.+..|.-.|.|.....+...
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~- 554 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVV- 554 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeee-
Confidence 344333 3444456777788889998888877665 344442 345566677778888888665323222
Q ss_pred cccCCeEEEEEe----CCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEE
Q 014934 289 GHKSEVCGLKWS----YDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWN 364 (415)
Q Consensus 289 ~h~~~V~~l~~s----pdg~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd 364 (415)
.....++.-.|+ ....++|.|+..|-|++||--..+.-..+.+-..+|..|..+.+|.++||+| ...|.+-|
T Consensus 555 esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTC----k~yllL~d 630 (776)
T COG5167 555 ESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATC----KNYLLLTD 630 (776)
T ss_pred eehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEee----cceEEEEe
Confidence 122223323333 2456999999999999999655444445556678899999999999999998 46777777
Q ss_pred CC
Q 014934 365 TT 366 (415)
Q Consensus 365 ~~ 366 (415)
++
T Consensus 631 ~~ 632 (776)
T COG5167 631 VP 632 (776)
T ss_pred cc
Confidence 64
No 416
>PRK10115 protease 2; Provisional
Probab=94.97 E-value=6.2 Score=42.12 Aligned_cols=193 Identities=6% Similarity=0.011 Sum_probs=97.8
Q ss_pred CeEEEEEcCCCCeEEEEECC-C----cEEEEECCCCeeeEEecCCCccEEEEEee--CCEEEEEeC-C-----CcEEEEE
Q 014934 210 SVCSVGWANRNTHLAVGTSH-G----KVQIWDASRCKRVRTMEGHRLRVGALAWS--SSLLSSGSR-D-----KSILQRD 276 (415)
Q Consensus 210 ~V~~v~~sp~g~~la~g~~d-g----~V~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~-d-----g~I~iwd 276 (415)
.+..+.|+|+|++||.+... | .|++.|+.+++.+...-.... ..++|. ++.|+.... + ..|+.++
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~ 205 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHT 205 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence 46678899999999887543 2 488889888764322221221 458887 444444432 2 3688888
Q ss_pred CCCCCc-cEEEeccccCCeE-EEEEeCCCCEEEEEe---CCCcEEEEECC--CCceeEEeccCCCcEEEEEEcCCCCcEE
Q 014934 277 IRAQED-FVSKLSGHKSEVC-GLKWSYDNRELASGG---NDNRLFVWNQH--STQPVLKYCEHTAAVKAIAWSPHLHGLL 349 (415)
Q Consensus 277 ~~~~~~-~~~~~~~h~~~V~-~l~~spdg~~lasg~---~dg~I~iwd~~--~~~~~~~~~~h~~~V~~l~~sp~~~~ll 349 (415)
+.++.. -...+........ .+..+.++++++..+ .++.+.+|+.. ++.+...+.........+. +..+..++
T Consensus 206 lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ly~ 284 (686)
T PRK10115 206 IGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQHRFYL 284 (686)
T ss_pred CCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCCCEEEE
Confidence 887731 2223332222233 233344888766543 34579999953 3333222222222222222 33333333
Q ss_pred EEEcCCCCCeEEEEECC-CCcEEEEeeC--CCCEEEEEECCCCCeEEEEEecCCCcEEEEEC
Q 014934 350 ASGGGTADRCIRFWNTT-TNTHLSCMDT--GSQVCNLVWSKNVNELVSTHGYSQNQIIVWRY 408 (415)
Q Consensus 350 asggg~~d~~I~iwd~~-t~~~~~~~~~--~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~ 408 (415)
.+..+.....|...++. .++....+.. ...|..+.+. ++.|+.. ...++.-.++-+
T Consensus 285 ~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~--~~~l~~~-~~~~g~~~l~~~ 343 (686)
T PRK10115 285 RSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF--TDWLVVE-ERQRGLTSLRQI 343 (686)
T ss_pred EEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE--CCEEEEE-EEeCCEEEEEEE
Confidence 33322233445555555 2322222333 2357777777 3455543 345555444443
No 417
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.94 E-value=0.86 Score=47.30 Aligned_cols=101 Identities=14% Similarity=0.217 Sum_probs=66.9
Q ss_pred CEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEe--CCCCEEEEEeCCCcEEEEECC-----C----CceeEEe
Q 014934 261 SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWS--YDNRELASGGNDNRLFVWNQH-----S----TQPVLKY 329 (415)
Q Consensus 261 ~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s--pdg~~lasg~~dg~I~iwd~~-----~----~~~~~~~ 329 (415)
...++-+....+.|||.+...-...........|..+.|. |+|+.+++.|-.+.|.+|--. + ..++.++
T Consensus 42 k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i 121 (631)
T PF12234_consen 42 KIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKI 121 (631)
T ss_pred cEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEE
Confidence 4444444455799999987752122222446789999996 699999888889999998642 1 1233333
Q ss_pred --ccCC-CcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECC
Q 014934 330 --CEHT-AAVKAIAWSPHLHGLLASGGGTADRCIRFWNTT 366 (415)
Q Consensus 330 --~~h~-~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~ 366 (415)
..|+ .+|.+..|.++|. +++.+ ++.+.|+|-.
T Consensus 122 ~i~~~T~h~Igds~Wl~~G~-LvV~s----GNqlfv~dk~ 156 (631)
T PF12234_consen 122 DISSHTPHPIGDSIWLKDGT-LVVGS----GNQLFVFDKW 156 (631)
T ss_pred EeecCCCCCccceeEecCCe-EEEEe----CCEEEEECCC
Confidence 3444 5789999999986 44433 4678888643
No 418
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.67 E-value=0.75 Score=45.10 Aligned_cols=134 Identities=10% Similarity=0.053 Sum_probs=87.9
Q ss_pred ecCC-CcEEEEEcCCeEEEEECCC--CCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeee----EEe
Q 014934 174 DWSS-HNVLAVGLGNCVYLWNACS--SKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRV----RTM 246 (415)
Q Consensus 174 ~ws~-~~~la~~~d~~V~iwd~~~--~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~----~~l 246 (415)
-|.. ++.|.+...|.+.-|-... ..+...+.....++|.++.|++|.+.||+--.+.+|.+++....+.. .+.
T Consensus 29 FfDDaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~c 108 (657)
T KOG2377|consen 29 FFDDANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQEC 108 (657)
T ss_pred eeccCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHh
Confidence 3444 3444444344444444332 23333333355679999999999999999999999999997433222 222
Q ss_pred cCCCccEEEEEee-CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEE
Q 014934 247 EGHRLRVGALAWS-SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELAS 308 (415)
Q Consensus 247 ~~h~~~V~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 308 (415)
+.....|....|. ...++..+..| +-+|-+......++..+.|+..|.-..|.++.+.++.
T Consensus 109 k~k~~~IlGF~W~~s~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL 170 (657)
T KOG2377|consen 109 KTKNANILGFCWTSSTEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILL 170 (657)
T ss_pred ccCcceeEEEEEecCeeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEee
Confidence 3345668899998 45566555555 6777666555556777788889999999998876443
No 419
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=94.56 E-value=2 Score=42.06 Aligned_cols=142 Identities=15% Similarity=0.176 Sum_probs=78.2
Q ss_pred CCeEEEEEcCCCCeEEEEE-----------CCC-cEEEEECCC--Ce--eeEEecCCCccEEEEEeeCCEEEEEeCCCcE
Q 014934 209 DSVCSVGWANRNTHLAVGT-----------SHG-KVQIWDASR--CK--RVRTMEGHRLRVGALAWSSSLLSSGSRDKSI 272 (415)
Q Consensus 209 ~~V~~v~~sp~g~~la~g~-----------~dg-~V~iwd~~~--~~--~~~~l~~h~~~V~~l~~~~~~l~sgs~dg~I 272 (415)
.....|+|.++|+++++-. ..+ .|.+++-.+ ++ ....+.........|++.++-|++++.....
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~GlyV~~~~~i~ 93 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGGVYVATPPDIL 93 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCCEEEeCCCeEE
Confidence 4567889999998766542 223 677776532 22 2233433334567788763226666555433
Q ss_pred EEEECCCC-----C--ccEEEecc----ccCCeEEEEEeCCCCEEEEEeCC-------------------CcEEEEECCC
Q 014934 273 LQRDIRAQ-----E--DFVSKLSG----HKSEVCGLKWSYDNRELASGGND-------------------NRLFVWNQHS 322 (415)
Q Consensus 273 ~iwd~~~~-----~--~~~~~~~~----h~~~V~~l~~spdg~~lasg~~d-------------------g~I~iwd~~~ 322 (415)
++.|.... . ..+..+.. +......++|.|||.+.++-+.. +.|.-+|...
T Consensus 94 ~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg 173 (367)
T TIGR02604 94 FLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDG 173 (367)
T ss_pred EEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCC
Confidence 44455321 1 11112222 23457889999999887764421 3455556554
Q ss_pred CceeEEeccCCCcEEEEEEcCCCCcEEEEE
Q 014934 323 TQPVLKYCEHTAAVKAIAWSPHLHGLLASG 352 (415)
Q Consensus 323 ~~~~~~~~~h~~~V~~l~~sp~~~~llasg 352 (415)
++. ..+...-.....++|+|+|. ++++-
T Consensus 174 ~~~-e~~a~G~rnp~Gl~~d~~G~-l~~td 201 (367)
T TIGR02604 174 GKL-RVVAHGFQNPYGHSVDSWGD-VFFCD 201 (367)
T ss_pred CeE-EEEecCcCCCccceECCCCC-EEEEc
Confidence 433 22322223457899999886 66654
No 420
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.29 E-value=1.6 Score=45.38 Aligned_cols=174 Identities=13% Similarity=0.096 Sum_probs=88.5
Q ss_pred CCcEEEEECCCCeeeEEecCCCccEEEEEee-CCEEEEEeCCCcEEEEECCCCCccE--EEeccccCCeEEEEEeCCCCE
Q 014934 229 HGKVQIWDASRCKRVRTMEGHRLRVGALAWS-SSLLSSGSRDKSILQRDIRAQEDFV--SKLSGHKSEVCGLKWSYDNRE 305 (415)
Q Consensus 229 dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~--~~~~~h~~~V~~l~~spdg~~ 305 (415)
.-.|+||++. |+.+..+....+.+-.+.|+ .+.|++...||++++|++-...... .-.......|..+.+..+|
T Consensus 63 ~~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~G-- 139 (829)
T KOG2280|consen 63 RPYIRIFNIS-GQLLGRILWKHGELIGMGWSDDEELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNG-- 139 (829)
T ss_pred ceeEEEEecc-ccchHHHHhcCCCeeeecccCCceEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCc--
Confidence 3458888864 55555544344478899999 6889999999999999986543111 1112223345555555555
Q ss_pred EEEEeCCCcEEEEECCCCceeEEecc-CCCcEEEEEE---cCCC-CcEEE-EEcCCCCC-eEEEEECCCCcEEEEee-CC
Q 014934 306 LASGGNDNRLFVWNQHSTQPVLKYCE-HTAAVKAIAW---SPHL-HGLLA-SGGGTADR-CIRFWNTTTNTHLSCMD-TG 377 (415)
Q Consensus 306 lasg~~dg~I~iwd~~~~~~~~~~~~-h~~~V~~l~~---sp~~-~~lla-sggg~~d~-~I~iwd~~t~~~~~~~~-~~ 377 (415)
+|.-..+|++.+-+-.....+.++.. ........+| .|+. ..+++ ..- ..+ .+..-+..+.+. ..+. ..
T Consensus 140 Vavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~--~v~~~~~q~~~~~~q~-~~~~~~~ 216 (829)
T KOG2280|consen 140 VAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDV--AVGLHICQVEESRVQL-HALSWPN 216 (829)
T ss_pred eEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeech--hhhhcccceecccccc-cccCCCC
Confidence 33334455555443222222223322 1111111222 2221 11111 110 000 111111112222 2222 23
Q ss_pred CCEEEEEECCCCCeEEEEEecCCCcEEEEECCC
Q 014934 378 SQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPT 410 (415)
Q Consensus 378 ~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s 410 (415)
+.+..+..|++.++|+. =...|.|.+-....
T Consensus 217 ~~~~ki~VS~n~~~laL--yt~~G~i~~vs~D~ 247 (829)
T KOG2280|consen 217 SSVVKISVSPNRRFLAL--YTETGKIWVVSIDL 247 (829)
T ss_pred ceEEEEEEcCCcceEEE--EecCCcEEEEecch
Confidence 67888999999999988 34678887776654
No 421
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=94.28 E-value=4.4 Score=37.38 Aligned_cols=153 Identities=14% Similarity=0.114 Sum_probs=86.2
Q ss_pred CeEEEEEcCCCCeEEEEE-CCCcEEEEECCCCeeeEEecCCCccEEEEEee--CCEEEEEeCCCcEEEEE-CCCCCccEE
Q 014934 210 SVCSVGWANRNTHLAVGT-SHGKVQIWDASRCKRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRD-IRAQEDFVS 285 (415)
Q Consensus 210 ~V~~v~~sp~g~~la~g~-~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd-~~~~~~~~~ 285 (415)
.+.+.+++++|+.+|... .++.-.||-...+.....+. ....+..-.|+ +...+....+....++. ...+.....
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~ 103 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPV 103 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcceeE
Confidence 689999999999777665 23334444433333333321 12256667777 34444445455555553 333322222
Q ss_pred Eeccc--cCCeEEEEEeCCCCEEEEEe---CCCcEEEEECC---CC------ceeEEeccCCCcEEEEEEcCCCCcEEEE
Q 014934 286 KLSGH--KSEVCGLKWSYDNRELASGG---NDNRLFVWNQH---ST------QPVLKYCEHTAAVKAIAWSPHLHGLLAS 351 (415)
Q Consensus 286 ~~~~h--~~~V~~l~~spdg~~lasg~---~dg~I~iwd~~---~~------~~~~~~~~h~~~V~~l~~sp~~~~llas 351 (415)
..... ...|..+.+||||..+|.-. .++.|.|--+. .+ .++.........+.+++|.+++. |++.
T Consensus 104 ~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~-L~V~ 182 (253)
T PF10647_consen 104 EVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDST-LVVL 182 (253)
T ss_pred EecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCE-EEEE
Confidence 22221 12899999999999988755 35777776543 22 12222223456889999999987 5554
Q ss_pred EcCCCCCeEEE-EEC
Q 014934 352 GGGTADRCIRF-WNT 365 (415)
Q Consensus 352 ggg~~d~~I~i-wd~ 365 (415)
+. ..+..+.. ...
T Consensus 183 ~~-~~~~~~~~~v~~ 196 (253)
T PF10647_consen 183 GR-SAGGPVVRLVSV 196 (253)
T ss_pred eC-CCCCceeEEEEc
Confidence 43 24444443 444
No 422
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=94.27 E-value=7.9 Score=41.80 Aligned_cols=112 Identities=20% Similarity=0.264 Sum_probs=76.9
Q ss_pred CeEEEEEeCC-CCEEEEEeC----------CCcEEEEECCCCceeEEeccC--CCcEEEEEEcCCCCcEEEEEcCCCCCe
Q 014934 293 EVCGLKWSYD-NRELASGGN----------DNRLFVWNQHSTQPVLKYCEH--TAAVKAIAWSPHLHGLLASGGGTADRC 359 (415)
Q Consensus 293 ~V~~l~~spd-g~~lasg~~----------dg~I~iwd~~~~~~~~~~~~h--~~~V~~l~~sp~~~~llasggg~~d~~ 359 (415)
.|++..|..| +.++++|.. .|+|.||.......+.....+ .+.|.++. -.+..++|. -...
T Consensus 776 Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~--~fngkllA~----In~~ 849 (1096)
T KOG1897|consen 776 SIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALV--EFNGKLLAG----INQS 849 (1096)
T ss_pred eeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehh--hhCCeEEEe----cCcE
Confidence 3556668877 677887753 477888887764444444333 34555543 333346664 4689
Q ss_pred EEEEECCCCcEEEEe-eCCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCCc
Q 014934 360 IRFWNTTTNTHLSCM-DTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMS 412 (415)
Q Consensus 360 I~iwd~~t~~~~~~~-~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~ 412 (415)
|++|+..+++.++.- .+...+..+...-.|.++++ |..-+.|.+-.|..++
T Consensus 850 vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~V--gDlm~Sitll~y~~~e 901 (1096)
T KOG1897|consen 850 VRLYEWTTERELRIECNISNPIIALDLQVKGDEIAV--GDLMRSITLLQYKGDE 901 (1096)
T ss_pred EEEEEccccceehhhhcccCCeEEEEEEecCcEEEE--eeccceEEEEEEeccC
Confidence 999999988655433 35678888999999999999 8788888888777655
No 423
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=94.26 E-value=2.7 Score=40.95 Aligned_cols=158 Identities=15% Similarity=0.087 Sum_probs=86.2
Q ss_pred EECCCCeeeEEecCCCccEEEEEee-------C-CEEEEEeCCCc--EEEEECCCCCccEEEecccc-CCeEEEEEeCCC
Q 014934 235 WDASRCKRVRTMEGHRLRVGALAWS-------S-SLLSSGSRDKS--ILQRDIRAQEDFVSKLSGHK-SEVCGLKWSYDN 303 (415)
Q Consensus 235 wd~~~~~~~~~l~~h~~~V~~l~~~-------~-~~l~sgs~dg~--I~iwd~~~~~~~~~~~~~h~-~~V~~l~~spdg 303 (415)
-|..+|-.+..+.........+-|. + .+|+++..||. +++.|+.+++ +..+.... ....+..++|+.
T Consensus 15 ~D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~--i~QLTdg~g~~~~g~~~s~~~ 92 (386)
T PF14583_consen 15 IDPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGE--ITQLTDGPGDNTFGGFLSPDD 92 (386)
T ss_dssp E-TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-E--EEE---SS-B-TTT-EE-TTS
T ss_pred eCCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCE--EEECccCCCCCccceEEecCC
Confidence 4667787777777555545545443 3 45666666664 6677887776 44444332 223356778988
Q ss_pred CEEEEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEc--CCCCcEEEEEc--------------------CCCCCeEE
Q 014934 304 RELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWS--PHLHGLLASGG--------------------GTADRCIR 361 (415)
Q Consensus 304 ~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s--p~~~~llasgg--------------------g~~d~~I~ 361 (415)
+.++-......|.-.|+.+.+....+.-....+-...|. .++. +++-.- ....+.|.
T Consensus 93 ~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t-~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~ 171 (386)
T PF14583_consen 93 RALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCT-KLVGIEISREDWKPLTKWKGFREFYEARPHCRIF 171 (386)
T ss_dssp SEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSS-EEEEEEEEGGG-----SHHHHHHHHHC---EEEE
T ss_pred CeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCcc-EEEEEEEeehhccCccccHHHHHHHhhCCCceEE
Confidence 888766666788999999987666665566666556664 3343 332210 01235577
Q ss_pred EEECCCCcEEEEeeCCCCEEEEEECCCCCeEEEE
Q 014934 362 FWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVST 395 (415)
Q Consensus 362 iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~ 395 (415)
-.|+.+|+....+.....+..+.|+|....+++-
T Consensus 172 ~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~f 205 (386)
T PF14583_consen 172 TIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMF 205 (386)
T ss_dssp EEETTT--EEEEEEESS-EEEEEEETTEEEEEEE
T ss_pred EEECCCCceeEEEecCccccCcccCCCCCCEEEE
Confidence 7789999887777778889999999987666553
No 424
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=94.11 E-value=5 Score=37.40 Aligned_cols=139 Identities=12% Similarity=0.024 Sum_probs=96.5
Q ss_pred CCccEEEEEeeCCEEEEEeCCCcEEEEECCCCCccEEEecccc-CCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCc---
Q 014934 249 HRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLSGHK-SEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQ--- 324 (415)
Q Consensus 249 h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~-~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~--- 324 (415)
-..-+..+.+++++...+..+.-+++.|+.++..+...-.-.. +--.+ |.-.|++..++..|.-+.+.|+.+.+
T Consensus 85 ~~~l~~Dv~vse~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyayg--v~vsGn~aYVadlddgfLivdvsdpssP~ 162 (370)
T COG5276 85 ARDLFADVRVSEEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYG--VYVSGNYAYVADLDDGFLIVDVSDPSSPQ 162 (370)
T ss_pred hhhhhheeEecccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEE--EEecCCEEEEeeccCcEEEEECCCCCCce
Confidence 3455777888899999999999999999998875443322111 22333 44468999888877778889987653
Q ss_pred eeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCC---cEEEEeeCCCCEEEEEECCCCCeEEE
Q 014934 325 PVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTN---THLSCMDTGSQVCNLVWSKNVNELVS 394 (415)
Q Consensus 325 ~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~---~~~~~~~~~~~V~~l~~s~~~~~l~s 394 (415)
..-++......-..++.| |++-+++. .|+-+.+-|+... ..+...+++..+.++..+++.-+++.
T Consensus 163 lagrya~~~~d~~~v~IS--Gn~AYvA~---~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vv 230 (370)
T COG5276 163 LAGRYALPGGDTHDVAIS--GNYAYVAW---RDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVV 230 (370)
T ss_pred eeeeeccCCCCceeEEEe--cCeEEEEE---eCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEE
Confidence 233444444444667777 44566655 6888999998764 45556667778889999988877766
No 425
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=93.98 E-value=0.82 Score=45.20 Aligned_cols=86 Identities=12% Similarity=0.012 Sum_probs=59.5
Q ss_pred cccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCcEEEEE--EcCCC----------------CcEEE
Q 014934 289 GHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIA--WSPHL----------------HGLLA 350 (415)
Q Consensus 289 ~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~--~sp~~----------------~~lla 350 (415)
.....+.+|+.+|++++.|+..+-|+|.++|+.++..++.+++...+-.+-. ..... ..|++
T Consensus 305 D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvI 384 (415)
T PF14655_consen 305 DSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVI 384 (415)
T ss_pred cCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEE
Confidence 3445688999999999999988889999999999888777766544321110 01110 11233
Q ss_pred EEcCCCCCeEEEEECCCCcEEEEeeC
Q 014934 351 SGGGTADRCIRFWNTTTNTHLSCMDT 376 (415)
Q Consensus 351 sggg~~d~~I~iwd~~t~~~~~~~~~ 376 (415)
-.. .-|.|.||.+++|..+..+..
T Consensus 385 yap--rRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 385 YAP--RRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred Eec--cCCeEEEEecCCCCEEEEEEe
Confidence 333 688999999999988877653
No 426
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.90 E-value=3.7 Score=42.89 Aligned_cols=214 Identities=14% Similarity=0.160 Sum_probs=109.1
Q ss_pred ceeEeecCC-CcEEEEEcCCeEEEEECCCCCeEEeEecCC---CCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeE
Q 014934 169 YLNLVDWSS-HNVLAVGLGNCVYLWNACSSKVTKLCDLGI---DDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVR 244 (415)
Q Consensus 169 ~i~~l~ws~-~~~la~~~d~~V~iwd~~~~~~~~~~~~~~---~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~ 244 (415)
.+-.+.|+. ..+|++..+|.|++|+....... ....+. ...|..+.+..+| +++-+.+|.|.+-.-.......
T Consensus 85 ~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~ie-~~svg~e~~~~~I~ec~~f~~G--Vavlt~~g~v~~i~~~~~~~~~ 161 (829)
T KOG2280|consen 85 ELIGMGWSDDEELICVQKDGTVHVYGLLGEFIE-SNSVGFESQMSDIVECRFFHNG--VAVLTVSGQVILINGVEEPKLR 161 (829)
T ss_pred CeeeecccCCceEEEEeccceEEEeecchhhhc-ccccccccccCceeEEEEecCc--eEEEecCCcEEEEcCCCcchhh
Confidence 466889999 77888889999999998654332 212211 2234444444455 4444556666554432222233
Q ss_pred EecC-CCccEEEEEee---CC----EEEEEe-CCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcE
Q 014934 245 TMEG-HRLRVGALAWS---SS----LLSSGS-RDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRL 315 (415)
Q Consensus 245 ~l~~-h~~~V~~l~~~---~~----~l~sgs-~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I 315 (415)
.+.. ......+-+|. ++ .++-.. ..+ ..++...........+....+.+..+..||+.++||-=..+|.|
T Consensus 162 ~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i 240 (829)
T KOG2280|consen 162 KMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTETGKI 240 (829)
T ss_pred hCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccccccCCCCceEEEEEEcCCcceEEEEecCCcE
Confidence 3332 11111123332 21 111111 111 11122222221122222223567889999999999999999999
Q ss_pred EEEECCCCceeEEecc-CCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEE
Q 014934 316 FVWNQHSTQPVLKYCE-HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVS 394 (415)
Q Consensus 316 ~iwd~~~~~~~~~~~~-h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s 394 (415)
.+-+....+.+..+.. -...-..++|+-+.. ++.+ .+..+.+..-. |..+.-+..... . +.--+||-.+++
T Consensus 241 ~~vs~D~~~~lce~~~~~~~~p~qm~Wcgnda-Vvl~----~e~~l~lvgp~-gd~V~f~yd~t~-~-l~~E~DGVRI~t 312 (829)
T KOG2280|consen 241 WVVSIDLSQILCEFNCTDHDPPKQMAWCGNDA-VVLS----WEVNLMLVGPP-GDSVQFYYDETA-I-LSAEVDGVRIIT 312 (829)
T ss_pred EEEecchhhhhhccCCCCCCchHhceeecCCc-eEEE----EeeeEEEEcCC-CCccccccCCCc-e-eeeccCeeEEec
Confidence 9999887777766652 222334788886543 2221 24444444332 222222211111 1 555566666665
No 427
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=93.85 E-value=2.4 Score=44.60 Aligned_cols=152 Identities=11% Similarity=0.139 Sum_probs=93.9
Q ss_pred cceeEeecCCCcEEEEEcCCeEEEEECCCCCeEE----eEec-----------------CCCCCeEEEEEcC--CCCeEE
Q 014934 168 FYLNLVDWSSHNVLAVGLGNCVYLWNACSSKVTK----LCDL-----------------GIDDSVCSVGWAN--RNTHLA 224 (415)
Q Consensus 168 ~~i~~l~ws~~~~la~~~d~~V~iwd~~~~~~~~----~~~~-----------------~~~~~V~~v~~sp--~g~~la 224 (415)
|.=|..+.+..++|.++.++.|+||+...-.... ...+ ...-.|+.+.... +...|+
T Consensus 39 fKNNLtalsq~n~LFiA~~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl 118 (717)
T PF08728_consen 39 FKNNLTALSQRNLLFIAYQSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLL 118 (717)
T ss_pred cccceeEEecCCEEEEEECCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEE
Confidence 3344555555788888999999999986532211 0000 0011244444332 456899
Q ss_pred EEECCCcEEEEECCC-------C----e---------eeEEecCCCccEEEEEee----CCEEEEEeCCCcEEEEECCCC
Q 014934 225 VGTSHGKVQIWDASR-------C----K---------RVRTMEGHRLRVGALAWS----SSLLSSGSRDKSILQRDIRAQ 280 (415)
Q Consensus 225 ~g~~dg~V~iwd~~~-------~----~---------~~~~l~~h~~~V~~l~~~----~~~l~sgs~dg~I~iwd~~~~ 280 (415)
+|..||.|.+|.+++ . + +.-.+ .-...+++++++ .++||+++....|.++-....
T Consensus 119 ~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~-~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~ 197 (717)
T PF08728_consen 119 LCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHL-RVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALV 197 (717)
T ss_pred EEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEe-ecCCceeEEEEEecCcceEEEEecCCceEEEEEEecc
Confidence 999999999997621 1 0 00111 134578888887 468888888888888755442
Q ss_pred --CccEEEeccccCCeEEEEEeCCC---C---EEEEEeCCCcEEEEEC
Q 014934 281 --EDFVSKLSGHKSEVCGLKWSYDN---R---ELASGGNDNRLFVWNQ 320 (415)
Q Consensus 281 --~~~~~~~~~h~~~V~~l~~spdg---~---~lasg~~dg~I~iwd~ 320 (415)
......-..|...|-+|+|-++. . .|++++-.|.+.+|++
T Consensus 198 ~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 198 DERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred ccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 11111122366689999997643 2 7888999999999887
No 428
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.80 E-value=1.9 Score=43.09 Aligned_cols=93 Identities=14% Similarity=0.104 Sum_probs=55.7
Q ss_pred CCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEecCCCccEEEEEee-CCEEEEEeCCCcEEEEECCCCCccEEEe
Q 014934 209 DSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWS-SSLLSSGSRDKSILQRDIRAQEDFVSKL 287 (415)
Q Consensus 209 ~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~ 287 (415)
-.|.-|..++.|..+|-.+.+|.+.++-.+....-..++.....|.|=.+. +..|++.+
T Consensus 104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss-------------------- 163 (741)
T KOG4460|consen 104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSS-------------------- 163 (741)
T ss_pred EEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccC--------------------
Confidence 457778889999999999999976665544444444454444445554433 22222221
Q ss_pred ccccCCeEEEEEeCCC---CEEEEEeCCCcEEEEECCCC
Q 014934 288 SGHKSEVCGLKWSYDN---RELASGGNDNRLFVWNQHST 323 (415)
Q Consensus 288 ~~h~~~V~~l~~spdg---~~lasg~~dg~I~iwd~~~~ 323 (415)
..-.+...+|+|+. ..|..-.+|+.|+|||+...
T Consensus 164 --~~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~ 200 (741)
T KOG4460|consen 164 --TSLTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEP 200 (741)
T ss_pred --CceeeeeccccCCccCCceEEEEecCcEEEEEecCCc
Confidence 11134456677754 56666677788888887654
No 429
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=93.66 E-value=4.9 Score=35.76 Aligned_cols=145 Identities=14% Similarity=0.156 Sum_probs=86.2
Q ss_pred EEEeeC-CEEEEEeCCCcEEEEECCCCC-ccEEEeccccCCeEEEEEeCCCCEEEEEeCC------CcEEEE---ECC--
Q 014934 255 ALAWSS-SLLSSGSRDKSILQRDIRAQE-DFVSKLSGHKSEVCGLKWSYDNRELASGGND------NRLFVW---NQH-- 321 (415)
Q Consensus 255 ~l~~~~-~~l~sgs~dg~I~iwd~~~~~-~~~~~~~~h~~~V~~l~~spdg~~lasg~~d------g~I~iw---d~~-- 321 (415)
.++-.+ +.|+.+.....|.+|++.... .....+.. -+.|..+.++..|++|++--.+ ..+++| ...
T Consensus 22 ~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~ 100 (215)
T PF14761_consen 22 AVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKE 100 (215)
T ss_pred eeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcc
Confidence 344444 677666777889999998433 33444443 3789999999999999994322 245554 222
Q ss_pred CCceeE-Eecc---------------------CCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcE-E---EEee
Q 014934 322 STQPVL-KYCE---------------------HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTH-L---SCMD 375 (415)
Q Consensus 322 ~~~~~~-~~~~---------------------h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~-~---~~~~ 375 (415)
..+++. ++-+ -...+.+++.+|-...|++.+ ++.+.+|.+..+.. . ..++
T Consensus 101 ~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~----~~~l~lf~l~~~~~~~~~~~~lD 176 (215)
T PF14761_consen 101 ENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC----GNKLVLFTLKYQTIQSEKFSFLD 176 (215)
T ss_pred cCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc----CCEEEEEEEEEEEEecccccEEe
Confidence 112221 1112 234678899999877777754 68899998764432 1 1111
Q ss_pred -------C--CCCEEEEEECCCCCeEEEEEecCCCcEEEEECC
Q 014934 376 -------T--GSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYP 409 (415)
Q Consensus 376 -------~--~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~ 409 (415)
+ +-....+++. +.+++.. ++..+++.++.
T Consensus 177 Fe~~l~~~~~~~~p~~v~ic--~~yiA~~---s~~ev~Vlkl~ 214 (215)
T PF14761_consen 177 FERSLIDHIDNFKPTQVAIC--EGYIAVM---SDLEVLVLKLE 214 (215)
T ss_pred chhhhhheecCceEEEEEEE--eeEEEEe---cCCEEEEEEEe
Confidence 1 1223344443 4567663 46678887764
No 430
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=93.52 E-value=3.2 Score=40.60 Aligned_cols=120 Identities=14% Similarity=0.171 Sum_probs=63.7
Q ss_pred cEEEEECCCCC-c--cEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCC-----c--ee-EEecc----CCCc
Q 014934 271 SILQRDIRAQE-D--FVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHST-----Q--PV-LKYCE----HTAA 335 (415)
Q Consensus 271 ~I~iwd~~~~~-~--~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~-----~--~~-~~~~~----h~~~ 335 (415)
.|.+++-..+. . ....+........+|++.++| +++ +......++.|.... + .+ ..+.. +...
T Consensus 48 rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~ 125 (367)
T TIGR02604 48 RILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHS 125 (367)
T ss_pred EEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCccccc
Confidence 56666543221 1 123333333456889999988 444 444443334454321 1 12 12322 2345
Q ss_pred EEEEEEcCCCCcEEEEEcCCC-----------------CCeEEEEECCCCcEEEEeeCC-CCEEEEEECCCCCeEEE
Q 014934 336 VKAIAWSPHLHGLLASGGGTA-----------------DRCIRFWNTTTNTHLSCMDTG-SQVCNLVWSKNVNELVS 394 (415)
Q Consensus 336 V~~l~~sp~~~~llasggg~~-----------------d~~I~iwd~~t~~~~~~~~~~-~~V~~l~~s~~~~~l~s 394 (415)
...++|.|+|. |+++-+... .+.|.-++..+++. ..+..+ .....++|+++|+.+++
T Consensus 126 ~~~l~~gpDG~-LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~-e~~a~G~rnp~Gl~~d~~G~l~~t 200 (367)
T TIGR02604 126 LNSLAWGPDGW-LYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKL-RVVAHGFQNPYGHSVDSWGDVFFC 200 (367)
T ss_pred ccCceECCCCC-EEEecccCCCceeccCCCccCcccccCceEEEEecCCCeE-EEEecCcCCCccceECCCCCEEEE
Confidence 78899999986 655543100 14455556555443 333333 33578999999988776
No 431
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=93.26 E-value=0.012 Score=57.57 Aligned_cols=133 Identities=17% Similarity=0.254 Sum_probs=96.9
Q ss_pred CeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEecCCCccEEEEEee---CCEEEEEeCCCcEEEEECCCCCccEEE
Q 014934 210 SVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWS---SSLLSSGSRDKSILQRDIRAQEDFVSK 286 (415)
Q Consensus 210 ~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~ 286 (415)
......|-+.+.-+++++.+..|..||-.. +...... ..+....|+|+ +..++.+-..+.+.+||+.+.......
T Consensus 36 ~pi~~~w~~e~~nlavaca~tiv~~YD~ag-q~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE 113 (615)
T KOG2247|consen 36 GPIIHRWRPEGHNLAVACANTIVIYYDKAG-QVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLE 113 (615)
T ss_pred ccceeeEecCCCceehhhhhhHHHhhhhhc-ceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHh
Confidence 344567888777799999999999999543 3332232 45567778887 345667778899999999765421111
Q ss_pred ec-cccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCC
Q 014934 287 LS-GHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLH 346 (415)
Q Consensus 287 ~~-~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~ 346 (415)
.. .|.... +.|++.+..++.|...|.+.|++..+.+.+...-.|...+++++|.+.+.
T Consensus 114 ~gg~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~ 172 (615)
T KOG2247|consen 114 SGGTSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDY 172 (615)
T ss_pred ccCcchHHH--HhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccce
Confidence 11 122222 78999999999999999999999988887777755999999999999874
No 432
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=93.22 E-value=8.4 Score=37.13 Aligned_cols=42 Identities=14% Similarity=-0.027 Sum_probs=22.8
Q ss_pred eEEEEECCCCCeEEeEec-CCCCCeEEEEEcCCCCeEEEEECC
Q 014934 188 CVYLWNACSSKVTKLCDL-GIDDSVCSVGWANRNTHLAVGTSH 229 (415)
Q Consensus 188 ~V~iwd~~~~~~~~~~~~-~~~~~V~~v~~sp~g~~la~g~~d 229 (415)
.+..||..+.+...+... .....-.+....-+|+..++|+.+
T Consensus 86 ~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~ 128 (346)
T TIGR03547 86 DVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVN 128 (346)
T ss_pred cEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcC
Confidence 488899888776554321 111111111113478888888764
No 433
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=93.12 E-value=4.2 Score=33.34 Aligned_cols=111 Identities=17% Similarity=0.200 Sum_probs=69.3
Q ss_pred EEEEcCCCCeEEEEECCCcEEEEECCCC--------eeeEEecCCCccEEEEEee-------CCEEEEEeCCCcEEEEEC
Q 014934 213 SVGWANRNTHLAVGTSHGKVQIWDASRC--------KRVRTMEGHRLRVGALAWS-------SSLLSSGSRDKSILQRDI 277 (415)
Q Consensus 213 ~v~~sp~g~~la~g~~dg~V~iwd~~~~--------~~~~~l~~h~~~V~~l~~~-------~~~l~sgs~dg~I~iwd~ 277 (415)
.-.|......|++++.-|+|.|++.... ..++.+. -...|++|+-. .+.|+.|+. ..+..||+
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~-t~llaYDV 80 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDV 80 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEc
Confidence 3456666667899999999999987533 2344444 45567777643 356777765 45999999
Q ss_pred CCCCccEEEeccccCCeEEEEEeC----CCCEEEEEeCCCcEEEEECCCCceeEE
Q 014934 278 RAQEDFVSKLSGHKSEVCGLKWSY----DNRELASGGNDNRLFVWNQHSTQPVLK 328 (415)
Q Consensus 278 ~~~~~~~~~~~~h~~~V~~l~~sp----dg~~lasg~~dg~I~iwd~~~~~~~~~ 328 (415)
....... ++.-...|.++.+-. +..++++|+ +..|.-||....+...+
T Consensus 81 ~~N~d~F--yke~~DGvn~i~~g~~~~~~~~l~ivGG-ncsi~Gfd~~G~e~fWt 132 (136)
T PF14781_consen 81 ENNSDLF--YKEVPDGVNAIVIGKLGDIPSPLVIVGG-NCSIQGFDYEGNEIFWT 132 (136)
T ss_pred ccCchhh--hhhCccceeEEEEEecCCCCCcEEEECc-eEEEEEeCCCCcEEEEE
Confidence 8876432 233345677777642 234444444 45677777655554444
No 434
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=93.11 E-value=0.074 Score=52.25 Aligned_cols=191 Identities=17% Similarity=0.284 Sum_probs=113.3
Q ss_pred ecCC-CcEEEEE--cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEecCCC
Q 014934 174 DWSS-HNVLAVG--LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHR 250 (415)
Q Consensus 174 ~ws~-~~~la~~--~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~ 250 (415)
+|.- +.++++- ..+.+++|++.+....+ ++++.+..-.-+.|++.+..+++|...|.+.|++..+.+.+..+..|.
T Consensus 81 ~wDkegdvlavlAek~~piylwd~n~eytqq-LE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~ 159 (615)
T KOG2247|consen 81 AWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQ-LESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQ 159 (615)
T ss_pred hhccccchhhhhhhcCCCeeechhhhhhHHH-HhccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccc
Confidence 4555 4444443 45789999998754433 223333333337899999999999999999999998887776666699
Q ss_pred ccEEEEEee-CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeE--EE---EEeCCCCEEEEEeCCCcEEEE----EC
Q 014934 251 LRVGALAWS-SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVC--GL---KWSYDNRELASGGNDNRLFVW----NQ 320 (415)
Q Consensus 251 ~~V~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~--~l---~~spdg~~lasg~~dg~I~iw----d~ 320 (415)
.++++++|. .++.+.++.|..+.+-...+.........+.....+ .+ .|..-|..+.+.-. |++.+. +-
T Consensus 160 RRgtq~av~lEd~vil~dcd~~L~v~~qegeta~ltevggepdnm~~~y~k~n~w~kage~m~sVvs-gKkhl~yak~nE 238 (615)
T KOG2247|consen 160 RRGTQIAVTLEDYVILCDCDNTLSVTTQEGETASLTEVGGEPDNMDFFYGKVNGWGKAGETMVSVVS-GKKHLMYAKYNE 238 (615)
T ss_pred cceeEEEecccceeeecCcHHHHHHhhhccceeeeeeccCccchhhhheeeeeccccccceeeeeee-cHHHHHHHhhcC
Confidence 999999999 578888888876655443332211111111111111 11 23334444443221 111111 11
Q ss_pred CCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcE
Q 014934 321 HSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTH 370 (415)
Q Consensus 321 ~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~ 370 (415)
..+..-..|+...+.+.++.|--||. ++. |..-+.|..-.+.+++.
T Consensus 239 ~D~pval~fq~~~gni~cyrwylDg~-i~i---gf~ag~iV~iS~h~aeL 284 (615)
T KOG2247|consen 239 LDEPVALQFQEKYGNIHCYRWYLDGY-ILI---GFDAGYIVSISAHNAEL 284 (615)
T ss_pred CCCccceEeeecCCceeEEEEecccc-ccc---cccceeEEEEeccchHH
Confidence 11222226666777889999998876 444 22456666666666553
No 435
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=93.02 E-value=0.51 Score=29.75 Aligned_cols=42 Identities=17% Similarity=0.241 Sum_probs=33.4
Q ss_pred CCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCCCEEEEEEC
Q 014934 343 PHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWS 386 (415)
Q Consensus 343 p~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s 386 (415)
|+++.++++.- .++.|.++|..+++.+..+..+.....+.|+
T Consensus 1 pd~~~lyv~~~--~~~~v~~id~~~~~~~~~i~vg~~P~~i~~~ 42 (42)
T TIGR02276 1 PDGTKLYVTNS--GSNTVSVIDTATNKVIATIPVGGYPFGVAVS 42 (42)
T ss_pred CCCCEEEEEeC--CCCEEEEEECCCCeEEEEEECCCCCceEEeC
Confidence 56777888875 6899999999999999988876656666653
No 436
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=92.79 E-value=0.53 Score=40.75 Aligned_cols=70 Identities=26% Similarity=0.434 Sum_probs=46.3
Q ss_pred ceeEeecCCCcEEEEEcCCeEEEEECCCCC-e-------------------E-----EeE------ec---C------CC
Q 014934 169 YLNLVDWSSHNVLAVGLGNCVYLWNACSSK-V-------------------T-----KLC------DL---G------ID 208 (415)
Q Consensus 169 ~i~~l~ws~~~~la~~~d~~V~iwd~~~~~-~-------------------~-----~~~------~~---~------~~ 208 (415)
+.++++||.++.||++.+..|+|.+..+.. . . ..+ .. . ..
T Consensus 6 ~~~~l~WS~Dg~laV~t~~~v~IL~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~s~ 85 (173)
T PF12657_consen 6 CPNALAWSEDGQLAVATGESVHILDPQTPNSLSKSFIPRPLTLPPSSIQWPITSIRRNLFTSSEWPTESPRSMDDEEISS 85 (173)
T ss_pred CCcCeeECCCCCEEEEcCCeEEEEeccCCcccccccccCCcccccccCCCccceEecCccccccCceecccccccccccc
Confidence 467999999999999999999999333211 0 0 000 00 0 01
Q ss_pred CCeEEEEEcCCC------CeEEEEECCCcEEEEECC
Q 014934 209 DSVCSVGWANRN------THLAVGTSHGKVQIWDAS 238 (415)
Q Consensus 209 ~~V~~v~~sp~g------~~la~g~~dg~V~iwd~~ 238 (415)
..|.+++|||.| .+||+.+.+|.|.||...
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence 267788888843 367778888888888755
No 437
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=92.76 E-value=0.84 Score=41.15 Aligned_cols=71 Identities=7% Similarity=0.127 Sum_probs=48.0
Q ss_pred cEEEEEeeCCEEEEEeCCCcEEEEECCCCCccEEE------ec-------cccCCeEEEEEeCCCCEEEEEeCCCcEEEE
Q 014934 252 RVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSK------LS-------GHKSEVCGLKWSYDNRELASGGNDNRLFVW 318 (415)
Q Consensus 252 ~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~------~~-------~h~~~V~~l~~spdg~~lasg~~dg~I~iw 318 (415)
++..+..++++|++-+.+|.+++||+.+.+..... +. .....|..+.++.+|.-+++-+ +|..+.|
T Consensus 14 ~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y 92 (219)
T PF07569_consen 14 PVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSY 92 (219)
T ss_pred ceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEe
Confidence 45556666777888888888888888776522111 11 2446688888888888777665 4778999
Q ss_pred ECCCC
Q 014934 319 NQHST 323 (415)
Q Consensus 319 d~~~~ 323 (415)
|..-+
T Consensus 93 ~~~L~ 97 (219)
T PF07569_consen 93 SPDLG 97 (219)
T ss_pred ccccc
Confidence 87544
No 438
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=92.69 E-value=2.5 Score=45.03 Aligned_cols=74 Identities=16% Similarity=0.236 Sum_probs=51.3
Q ss_pred cCCeEEEEEeCCCCEEEEEeCCCcEEEEECCC----------Cce--e-EEe--------ccCCCcEEEEEEcCCC---C
Q 014934 291 KSEVCGLKWSYDNRELASGGNDNRLFVWNQHS----------TQP--V-LKY--------CEHTAAVKAIAWSPHL---H 346 (415)
Q Consensus 291 ~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~----------~~~--~-~~~--------~~h~~~V~~l~~sp~~---~ 346 (415)
.-+|..|.++|+|.+||..|..| |.|-.+-. ++. . ..+ ..+...|..+.|+|.+ .
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence 35799999999999999998876 44444421 111 1 111 1345678999999985 5
Q ss_pred cEEEEEcCCCCCeEEEEECCCC
Q 014934 347 GLLASGGGTADRCIRFWNTTTN 368 (415)
Q Consensus 347 ~llasggg~~d~~I~iwd~~t~ 368 (415)
.|++-. .|++||+||+...
T Consensus 163 ~l~vLt---sdn~lR~y~~~~~ 181 (717)
T PF10168_consen 163 HLVVLT---SDNTLRLYDISDP 181 (717)
T ss_pred eEEEEe---cCCEEEEEecCCC
Confidence 566655 5999999999753
No 439
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=92.54 E-value=5.9 Score=41.78 Aligned_cols=111 Identities=11% Similarity=0.091 Sum_probs=71.9
Q ss_pred cEEEEEee----CCEEEEEeCCCcEEEEECCC-------C----C--------ccEEEeccccCCeEEEEEe--CCCCEE
Q 014934 252 RVGALAWS----SSLLSSGSRDKSILQRDIRA-------Q----E--------DFVSKLSGHKSEVCGLKWS--YDNREL 306 (415)
Q Consensus 252 ~V~~l~~~----~~~l~sgs~dg~I~iwd~~~-------~----~--------~~~~~~~~h~~~V~~l~~s--pdg~~l 306 (415)
.|+.|... .++|+.|..||.|.+|.+.. . . .+...+ .....+++|+++ ...++|
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~-~v~~SaWGLdIh~~~~~rlI 180 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHL-RVGASAWGLDIHDYKKSRLI 180 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEe-ecCCceeEEEEEecCcceEE
Confidence 35555443 37899999999999997631 0 0 011112 234578999999 888999
Q ss_pred EEEeCCCcEEEEECCCC--ceeE-EeccCCCcEEEEEEcCCC-----CcEEEEEcCCCCCeEEEEEC
Q 014934 307 ASGGNDNRLFVWNQHST--QPVL-KYCEHTAAVKAIAWSPHL-----HGLLASGGGTADRCIRFWNT 365 (415)
Q Consensus 307 asg~~dg~I~iwd~~~~--~~~~-~~~~h~~~V~~l~~sp~~-----~~llasggg~~d~~I~iwd~ 365 (415)
|++++...|.||-.... +... .-..|...|-+|.|-++. ...+++++ -.|.+.+|++
T Consensus 181 AVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~d--I~G~v~~~~I 245 (717)
T PF08728_consen 181 AVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATD--ISGEVWTFKI 245 (717)
T ss_pred EEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEe--ccCcEEEEEE
Confidence 99999998888765431 1111 111356678899997764 12455554 7888888877
No 440
>PLN02153 epithiospecifier protein
Probab=92.24 E-value=11 Score=36.20 Aligned_cols=133 Identities=12% Similarity=0.091 Sum_probs=67.2
Q ss_pred eEEEEECCCCCeEEeEecCC--CC---CeEEEEEcCCCCeEEEEECC-----CcEEEEECCCCe--eeEEecC---CCcc
Q 014934 188 CVYLWNACSSKVTKLCDLGI--DD---SVCSVGWANRNTHLAVGTSH-----GKVQIWDASRCK--RVRTMEG---HRLR 252 (415)
Q Consensus 188 ~V~iwd~~~~~~~~~~~~~~--~~---~V~~v~~sp~g~~la~g~~d-----g~V~iwd~~~~~--~~~~l~~---h~~~ 252 (415)
.+++||..+.+......... .. ....+.+ ++++++.|+.+ ..|.+||..+.+ .+..+.. ...+
T Consensus 51 ~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R 128 (341)
T PLN02153 51 DLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV--GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEAR 128 (341)
T ss_pred cEEEEECCCCEEEEcCccCCCCCCccCceEEEEE--CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCc
Confidence 58899998877654432211 11 1222222 56677777653 257889987654 2222210 1111
Q ss_pred -EEEEE-eeCCEEEEEeCC-----------CcEEEEECCCCCccEEEecccc-----CCeEEEEEeCCCCEEEEEeCC--
Q 014934 253 -VGALA-WSSSLLSSGSRD-----------KSILQRDIRAQEDFVSKLSGHK-----SEVCGLKWSYDNRELASGGND-- 312 (415)
Q Consensus 253 -V~~l~-~~~~~l~sgs~d-----------g~I~iwd~~~~~~~~~~~~~h~-----~~V~~l~~spdg~~lasg~~d-- 312 (415)
-.+++ ..+.+++.|+.+ ..+.+||..+.. -..+.... ..-.+++. -++++++.|+.+
T Consensus 129 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~--W~~l~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~ 205 (341)
T PLN02153 129 TFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGK--WVQLPDPGENFEKRGGAGFAV-VQGKIWVVYGFATS 205 (341)
T ss_pred eeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCe--EeeCCCCCCCCCCCCcceEEE-ECCeEEEEeccccc
Confidence 11222 335666777654 247788887654 22221111 11112222 256666665532
Q ss_pred -----------CcEEEEECCCCce
Q 014934 313 -----------NRLFVWNQHSTQP 325 (415)
Q Consensus 313 -----------g~I~iwd~~~~~~ 325 (415)
+.|.+||..+.+-
T Consensus 206 ~~~gG~~~~~~~~v~~yd~~~~~W 229 (341)
T PLN02153 206 ILPGGKSDYESNAVQFFDPASGKW 229 (341)
T ss_pred cccCCccceecCceEEEEcCCCcE
Confidence 4688999887643
No 441
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=92.24 E-value=20 Score=38.92 Aligned_cols=111 Identities=16% Similarity=0.213 Sum_probs=71.9
Q ss_pred CCeEEEEEeC-CCCEEEEEeCCCcEEEEECCCC----ceeEEec-cCC----------CcEEEEEEcCCCCcEEEEEcCC
Q 014934 292 SEVCGLKWSY-DNRELASGGNDNRLFVWNQHST----QPVLKYC-EHT----------AAVKAIAWSPHLHGLLASGGGT 355 (415)
Q Consensus 292 ~~V~~l~~sp-dg~~lasg~~dg~I~iwd~~~~----~~~~~~~-~h~----------~~V~~l~~sp~~~~llasggg~ 355 (415)
.+...++|+| +.+.||.....|...|||+... .....+. .+. ..-..|.|.++-+.||++.
T Consensus 146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~--- 222 (765)
T PF10214_consen 146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCN--- 222 (765)
T ss_pred CccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEc---
Confidence 4677899998 5678999999999999999211 1111111 111 2234788988877677753
Q ss_pred CCCeEEEEECCCCcEEE---EeeCCCCEEEEEECCC--CCeEEEEEecCCCcEEEEECCC
Q 014934 356 ADRCIRFWNTTTNTHLS---CMDTGSQVCNLVWSKN--VNELVSTHGYSQNQIIVWRYPT 410 (415)
Q Consensus 356 ~d~~I~iwd~~t~~~~~---~~~~~~~V~~l~~s~~--~~~l~s~~g~~dg~I~vw~~~s 410 (415)
...+.++|+.+..... .....+.|..+.-++. +..++.| ...|...++..
T Consensus 223 -r~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT----s~eiiw~~~~~ 277 (765)
T PF10214_consen 223 -RSKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT----SKEIIWLDVKS 277 (765)
T ss_pred -CCceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEe----cCeEEEEEccC
Confidence 6889999999876533 2235567888888877 3334432 13566666554
No 442
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=92.09 E-value=9.7 Score=35.08 Aligned_cols=140 Identities=15% Similarity=0.102 Sum_probs=82.5
Q ss_pred cEEEEEee--CCEEEEEe-CC--CcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEE-CCCCce
Q 014934 252 RVGALAWS--SSLLSSGS-RD--KSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWN-QHSTQP 325 (415)
Q Consensus 252 ~V~~l~~~--~~~l~sgs-~d--g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd-~~~~~~ 325 (415)
.+...+++ +..++... .+ ..++++..... ....+.+ ..+....|++++...+....+....++. ..++..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~--~~~~~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~ 100 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP--VRPVLTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTG 100 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc--ceeeccC--CccccccccCCCCEEEEEcCCCceEEEEecCCCcc
Confidence 56667776 44444433 23 34555443332 2222232 3788889999988887777677777763 333322
Q ss_pred e-EEeccC--CCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECC---CC--cE----EEEe-eCCCCEEEEEECCCCCeE
Q 014934 326 V-LKYCEH--TAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTT---TN--TH----LSCM-DTGSQVCNLVWSKNVNEL 392 (415)
Q Consensus 326 ~-~~~~~h--~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~---t~--~~----~~~~-~~~~~V~~l~~s~~~~~l 392 (415)
. ...... ...|.++.++|+|..+.+......++.|.+--+. .+ .. +... .....+..+.|..++..+
T Consensus 101 ~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~ 180 (253)
T PF10647_consen 101 EPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLV 180 (253)
T ss_pred eeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEE
Confidence 1 222211 1289999999999987666532245777776543 23 11 1111 124678999999999887
Q ss_pred EEE
Q 014934 393 VST 395 (415)
Q Consensus 393 ~s~ 395 (415)
+.+
T Consensus 181 V~~ 183 (253)
T PF10647_consen 181 VLG 183 (253)
T ss_pred EEe
Confidence 774
No 443
>PHA02790 Kelch-like protein; Provisional
Probab=91.92 E-value=6 Score=40.23 Aligned_cols=140 Identities=14% Similarity=0.084 Sum_probs=73.0
Q ss_pred CcEEEEEc-C--CeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCC---cEEEEECCCCeee--EEecCC
Q 014934 178 HNVLAVGL-G--NCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHG---KVQIWDASRCKRV--RTMEGH 249 (415)
Q Consensus 178 ~~~la~~~-d--~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg---~V~iwd~~~~~~~--~~l~~h 249 (415)
+.+.++|. + ..+..|+..+++....-.+.....-.++ ..-+|+..++|+.++ .+..||..+.+-. ..+...
T Consensus 319 ~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~-~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~ 397 (480)
T PHA02790 319 NKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAV-ASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYP 397 (480)
T ss_pred CEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEE-EEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCc
Confidence 44555553 2 4588888877766555443321111122 233688888887654 4788998765422 222222
Q ss_pred CccEEEEEeeCCEEEEEeCCCcEEEEECCCCCccEEEecc--ccCCeEEEEEeCCCCEEEEEeCC-----CcEEEEECCC
Q 014934 250 RLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLSG--HKSEVCGLKWSYDNRELASGGND-----NRLFVWNQHS 322 (415)
Q Consensus 250 ~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~--h~~~V~~l~~spdg~~lasg~~d-----g~I~iwd~~~ 322 (415)
......++.++.+.+.| |.+.+||.++.. ...+.. +...-.+++. -+|++.+.||.+ ..+.+||..+
T Consensus 398 r~~~~~~~~~~~IYv~G---G~~e~ydp~~~~--W~~~~~m~~~r~~~~~~v-~~~~IYviGG~~~~~~~~~ve~Yd~~~ 471 (480)
T PHA02790 398 HYKSCALVFGRRLFLVG---RNAEFYCESSNT--WTLIDDPIYPRDNPELII-VDNKLLLIGGFYRGSYIDTIEVYNNRT 471 (480)
T ss_pred cccceEEEECCEEEEEC---CceEEecCCCCc--EeEcCCCCCCccccEEEE-ECCEEEEECCcCCCcccceEEEEECCC
Confidence 22233344556666666 357788887654 122111 1111122222 267788888754 3466677665
Q ss_pred Cc
Q 014934 323 TQ 324 (415)
Q Consensus 323 ~~ 324 (415)
.+
T Consensus 472 ~~ 473 (480)
T PHA02790 472 YS 473 (480)
T ss_pred Ce
Confidence 43
No 444
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=91.85 E-value=11 Score=35.22 Aligned_cols=146 Identities=12% Similarity=0.006 Sum_probs=93.4
Q ss_pred cCCCcEEEEEcCCeEEEEECCCCCeEEeEec-CCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCC---eeeEEecCCC
Q 014934 175 WSSHNVLAVGLGNCVYLWNACSSKVTKLCDL-GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRC---KRVRTMEGHR 250 (415)
Q Consensus 175 ws~~~~la~~~d~~V~iwd~~~~~~~~~~~~-~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~---~~~~~l~~h~ 250 (415)
++.+.+..+-.+..++|.|+.+..-..+..+ ...+.-.++.. .|++..++..+.-..+.|+.+. .....+....
T Consensus 94 vse~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsdpssP~lagrya~~~ 171 (370)
T COG5276 94 VSEEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPG 171 (370)
T ss_pred ecccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCceeeeeeccCC
Confidence 3333333444556799999988654333322 22244555554 5888888775556778888654 3444555555
Q ss_pred ccEEEEEeeCCEEEEEeCCCcEEEEECCCCCccEEEecccc-CCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCc
Q 014934 251 LRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLSGHK-SEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQ 324 (415)
Q Consensus 251 ~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~-~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~ 324 (415)
..-..++.++++...+..|+-+.+-|+..+..++..-.-.. ..+.++..+++-.+++..+ . -+.+-|..+.+
T Consensus 172 ~d~~~v~ISGn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~-e-gvlivd~s~~s 244 (370)
T COG5276 172 GDTHDVAISGNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYD-E-GVLIVDVSGPS 244 (370)
T ss_pred CCceeEEEecCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEcc-c-ceEEEecCCCC
Confidence 55678888999999999999999999998875543322222 3688888887666655543 2 36666665544
No 445
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.83 E-value=3.5 Score=41.36 Aligned_cols=75 Identities=19% Similarity=0.237 Sum_probs=45.4
Q ss_pred CeEEEEEeCCCCEEEEEeCCCcEEEEEC---------CCCceeEEe----------c-cCCCcEEEEEEcCCC---CcEE
Q 014934 293 EVCGLKWSYDNRELASGGNDNRLFVWNQ---------HSTQPVLKY----------C-EHTAAVKAIAWSPHL---HGLL 349 (415)
Q Consensus 293 ~V~~l~~spdg~~lasg~~dg~I~iwd~---------~~~~~~~~~----------~-~h~~~V~~l~~sp~~---~~ll 349 (415)
+|..+..++.|..+|..|.+|.+.++=. ++++++... . ...-.+..++|+|+. ..|+
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 5778888999999999999996554321 223322111 0 111235667888875 2344
Q ss_pred EEEcCCCCCeEEEEECCCCcE
Q 014934 350 ASGGGTADRCIRFWNTTTNTH 370 (415)
Q Consensus 350 asggg~~d~~I~iwd~~t~~~ 370 (415)
+-. .|..||+||+.....
T Consensus 185 iL~---sdnviRiy~lS~~te 202 (741)
T KOG4460|consen 185 LLT---SDNVIRIYSLSEPTE 202 (741)
T ss_pred EEe---cCcEEEEEecCCcch
Confidence 433 478888888765543
No 446
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=91.79 E-value=12 Score=35.63 Aligned_cols=104 Identities=17% Similarity=0.146 Sum_probs=55.0
Q ss_pred CCCeEEEEECCC-----cEEEEECCCCee---eEEecC---CCccEEEEEeeCCEEEEEeCC-----CcEEEEECCCCCc
Q 014934 219 RNTHLAVGTSHG-----KVQIWDASRCKR---VRTMEG---HRLRVGALAWSSSLLSSGSRD-----KSILQRDIRAQED 282 (415)
Q Consensus 219 ~g~~la~g~~dg-----~V~iwd~~~~~~---~~~l~~---h~~~V~~l~~~~~~l~sgs~d-----g~I~iwd~~~~~~ 282 (415)
++.++++|+.++ .+..||+.+.+- ...+.. ......+....+.+.+.|+.. ..+..||+.+..
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~- 150 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQE- 150 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCC-
Confidence 566777777543 467777766542 122221 111222333446666777642 358888988664
Q ss_pred cEEEecc-c-cCCeEEEEEeCCCCEEEEEeCCC----cEEEEECCCCc
Q 014934 283 FVSKLSG-H-KSEVCGLKWSYDNRELASGGNDN----RLFVWNQHSTQ 324 (415)
Q Consensus 283 ~~~~~~~-h-~~~V~~l~~spdg~~lasg~~dg----~I~iwd~~~~~ 324 (415)
-..+.. . .......+...++++.+.|+.++ .+.+||..+.+
T Consensus 151 -W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 151 -WFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred -eeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence 222221 1 11112222234677888888764 35688987754
No 447
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=91.40 E-value=1.1 Score=28.91 Aligned_cols=33 Identities=27% Similarity=0.343 Sum_probs=26.6
Q ss_pred CcEEEEEEcCCCC--cEEEEEcCCCCCeEEEEECCCC
Q 014934 334 AAVKAIAWSPHLH--GLLASGGGTADRCIRFWNTTTN 368 (415)
Q Consensus 334 ~~V~~l~~sp~~~--~llasggg~~d~~I~iwd~~t~ 368 (415)
++|.++.|+|... .||+-.. .-+.|.++|++++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E--~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAE--HQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEc--cCCeEEEEEcccC
Confidence 4789999997654 5888775 6899999999953
No 448
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=91.37 E-value=0.96 Score=29.10 Aligned_cols=31 Identities=23% Similarity=0.216 Sum_probs=26.1
Q ss_pred CCeEEEEEeCCC---CEEEEEeCCCcEEEEECCC
Q 014934 292 SEVCGLKWSYDN---RELASGGNDNRLFVWNQHS 322 (415)
Q Consensus 292 ~~V~~l~~spdg---~~lasg~~dg~I~iwd~~~ 322 (415)
+.|.+++|+|+. .+||.+-.-+.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 368899999854 4888888889999999985
No 449
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=91.09 E-value=4.5 Score=41.90 Aligned_cols=74 Identities=20% Similarity=0.174 Sum_probs=45.4
Q ss_pred eCCEEEEEeCCCcEEEEECCC---CCccEE-Ee-cc--------------------ccCCeEEEEEeC----CCCEEEEE
Q 014934 259 SSSLLSSGSRDKSILQRDIRA---QEDFVS-KL-SG--------------------HKSEVCGLKWSY----DNRELASG 309 (415)
Q Consensus 259 ~~~~l~sgs~dg~I~iwd~~~---~~~~~~-~~-~~--------------------h~~~V~~l~~sp----dg~~lasg 309 (415)
++..++.+..||.+....... ...... .. .. ....+..++++. +..+|++.
T Consensus 157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl 236 (547)
T PF11715_consen 157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTL 236 (547)
T ss_dssp SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEE
T ss_pred CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEE
Confidence 567777778888877776554 111111 10 00 123455566666 77899999
Q ss_pred eCCCcEEEEECCCCceeEEeccC
Q 014934 310 GNDNRLFVWNQHSTQPVLKYCEH 332 (415)
Q Consensus 310 ~~dg~I~iwd~~~~~~~~~~~~h 332 (415)
+.|++|++||+.+++++....-.
T Consensus 237 ~~D~~LRiW~l~t~~~~~~~~~~ 259 (547)
T PF11715_consen 237 SRDHTLRIWSLETGQCLATIDLL 259 (547)
T ss_dssp ETTSEEEEEETTTTCEEEEEETT
T ss_pred eCCCeEEEEECCCCeEEEEeccc
Confidence 99999999999999997776443
No 450
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=91.09 E-value=14 Score=34.85 Aligned_cols=197 Identities=10% Similarity=0.103 Sum_probs=113.1
Q ss_pred CeEEEEEcCCCCeEEEEECCCcEEEEECC------CC-eeeEEecC-----CCccEEEEEeeC--------------CEE
Q 014934 210 SVCSVGWANRNTHLAVGTSHGKVQIWDAS------RC-KRVRTMEG-----HRLRVGALAWSS--------------SLL 263 (415)
Q Consensus 210 ~V~~v~~sp~g~~la~g~~dg~V~iwd~~------~~-~~~~~l~~-----h~~~V~~l~~~~--------------~~l 263 (415)
.-..|+++|.+.+-++....+...+||.. .. ..+.++.. .....+.+.|++ ..+
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 35689999999877777778899999986 12 23333331 234677888872 236
Q ss_pred EEEeCCCcEEEEECCCCCc----cEEEec-cccCC-eEEEEEeC--CCCEEEEE-eCCCcEEEEECCCCceeE--EeccC
Q 014934 264 SSGSRDKSILQRDIRAQED----FVSKLS-GHKSE-VCGLKWSY--DNRELASG-GNDNRLFVWNQHSTQPVL--KYCEH 332 (415)
Q Consensus 264 ~sgs~dg~I~iwd~~~~~~----~~~~~~-~h~~~-V~~l~~sp--dg~~lasg-~~dg~I~iwd~~~~~~~~--~~~~h 332 (415)
+.+++||+|.-|....... ....+. .-... -.++++.. .+.+|..+ -..++|.|||-.=.+... .|...
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP 183 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDP 183 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCC
Confidence 7889999999998543322 122222 11122 34566653 24555443 467889999854222110 01110
Q ss_pred CCcEEEEEEcCC-----CCcEEEEEc-----------CCCCCeEEEEECCCCcEEEEeeCCCC---EEEEEECC------
Q 014934 333 TAAVKAIAWSPH-----LHGLLASGG-----------GTADRCIRFWNTTTNTHLSCMDTGSQ---VCNLVWSK------ 387 (415)
Q Consensus 333 ~~~V~~l~~sp~-----~~~llasgg-----------g~~d~~I~iwd~~t~~~~~~~~~~~~---V~~l~~s~------ 387 (415)
. | -.-|.|. +..|+++-. |.--|.|-+||+. |..++.+..+.. -+.++..|
T Consensus 184 ~--i-PagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~~ 259 (336)
T TIGR03118 184 A--L-PAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGSL 259 (336)
T ss_pred C--C-CCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCCC
Confidence 0 0 0011111 112333221 1135789999975 778888865543 45666654
Q ss_pred CCCeEEEEEecCCCcEEEEECCCCc
Q 014934 388 NVNELVSTHGYSQNQIIVWRYPTMS 412 (415)
Q Consensus 388 ~~~~l~s~~g~~dg~I~vw~~~s~~ 412 (415)
.+..|+- -.-||+|..+|..+++
T Consensus 260 sg~lLVG--NFGDG~InaFD~~sG~ 282 (336)
T TIGR03118 260 SGALLVG--NFGDGTINAYDPQSGA 282 (336)
T ss_pred CCCeEEe--ecCCceeEEecCCCCc
Confidence 4667776 4559999999988765
No 451
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=90.87 E-value=16 Score=35.18 Aligned_cols=102 Identities=15% Similarity=0.187 Sum_probs=57.6
Q ss_pred CeEEEEEcCCCCeEEEEECCCcEEEEECCCCee---eEEe----cCCCccEEEEEeeC-----CEEEEEeCC--------
Q 014934 210 SVCSVGWANRNTHLAVGTSHGKVQIWDASRCKR---VRTM----EGHRLRVGALAWSS-----SLLSSGSRD-------- 269 (415)
Q Consensus 210 ~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~---~~~l----~~h~~~V~~l~~~~-----~~l~sgs~d-------- 269 (415)
..++|+|.|+|+.++ +...|.|.+++ ..+.. +..+ .........+++++ .+|......
T Consensus 3 ~P~~~a~~pdG~l~v-~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLV-AERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEE-EETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEE-EeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 468999999987665 57799999999 44432 3333 23456788999986 344444331
Q ss_pred -CcEEEEECCCC-------CccEEEecc---ccCCeEEEEEeCCCCEEEEEeCCC
Q 014934 270 -KSILQRDIRAQ-------EDFVSKLSG---HKSEVCGLKWSYDNRELASGGNDN 313 (415)
Q Consensus 270 -g~I~iwd~~~~-------~~~~~~~~~---h~~~V~~l~~spdg~~lasg~~dg 313 (415)
..|.-|..... +..+..+.. ....-..|.|.|||.+.++.+..+
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~ 135 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGG 135 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TT
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCC
Confidence 23444444333 111112222 233567799999998777765443
No 452
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=90.71 E-value=24 Score=37.01 Aligned_cols=230 Identities=12% Similarity=0.114 Sum_probs=123.1
Q ss_pred eeEeecCC-CcEEEEE-cCCeE--EEEECCCCCeEEeEecCCCCCeEEEEEcCC---CCeEEEEECCCc-EEEEECCCC-
Q 014934 170 LNLVDWSS-HNVLAVG-LGNCV--YLWNACSSKVTKLCDLGIDDSVCSVGWANR---NTHLAVGTSHGK-VQIWDASRC- 240 (415)
Q Consensus 170 i~~l~ws~-~~~la~~-~d~~V--~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~---g~~la~g~~dg~-V~iwd~~~~- 240 (415)
.....++| .+.+-+| ++..| |+.+ -|.+++..+.+.....|.|+..... .+..++|-.++. -++-.+..+
T Consensus 30 ~vs~~~s~~sn~IdiGIS~S~ISsYIi~-PTPKLiwsypi~pt~iV~~~dV~~~~~~~~~~~~glt~rKk~~ll~i~~~~ 108 (670)
T PF10395_consen 30 QVSDDFSPDSNQIDIGISGSAISSYIIK-PTPKLIWSYPISPTTIVECCDVLEKSDGKKLYCVGLTERKKFKLLLIERKV 108 (670)
T ss_pred eeecccCCCCceEEEEeccchhhheecC-CCcceeEeeccCcCceEEEEEeEecCCCcEEEEEEEeeCCeeEEEEEEccC
Confidence 33445666 5667777 34444 4443 2556666666677788888887543 235666645443 343333222
Q ss_pred ----------e--eeEEecCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCc-cEEEec-cccC------CeEEEE
Q 014934 241 ----------K--RVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQED-FVSKLS-GHKS------EVCGLK 298 (415)
Q Consensus 241 ----------~--~~~~l~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~-~~~~~~-~h~~------~V~~l~ 298 (415)
+ ....++ -...|-++.+. +..+++...+|.|.+||.....- .+..+. .+.. -|....
T Consensus 109 ~~~~~~~~~~e~~~~~~~k-l~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~ 187 (670)
T PF10395_consen 109 GSTEDGTVNSETTNEFELK-LDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFE 187 (670)
T ss_pred ccccccccCccccceEEEE-cccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccc
Confidence 1 111122 35678888887 68899999999999999932220 000111 1111 122111
Q ss_pred EeCCCCEEEEEeC-C-C--cEEEEEC-CCCceeEEec---cCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcE
Q 014934 299 WSYDNRELASGGN-D-N--RLFVWNQ-HSTQPVLKYC---EHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTH 370 (415)
Q Consensus 299 ~spdg~~lasg~~-d-g--~I~iwd~-~~~~~~~~~~---~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~ 370 (415)
......++++.+. + . ..+++.+ .....+..+. .+........|+-....|+.- .++.|.+|++..-+.
T Consensus 188 ~~~~~~~ll~v~~~~~~k~~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l----~~~~i~~ysip~f~~ 263 (670)
T PF10395_consen 188 LENGKDLLLTVSQLSNSKLSYKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL----SKKTISSYSIPNFQI 263 (670)
T ss_pred cccCCceEEEEEEcCCCcEEEEEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE----eCCEEEEEEcCCceE
Confidence 1112334444333 2 2 4667777 2223333332 233334444444433334443 378999999998887
Q ss_pred EEEeeCC-------CCEEEEEECCCCCeEEEEEecCCCcEEEEECC
Q 014934 371 LSCMDTG-------SQVCNLVWSKNVNELVSTHGYSQNQIIVWRYP 409 (415)
Q Consensus 371 ~~~~~~~-------~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~ 409 (415)
.+++.-. ..+.++.--...+.|++ .++.|++.|+.
T Consensus 264 ~~tI~l~~ii~~~~~~~vSl~~~s~nRvLLs----~~nkIyLld~~ 305 (670)
T PF10395_consen 264 QKTISLPSIIDKESDDLVSLKPPSPNRVLLS----VNNKIYLLDLK 305 (670)
T ss_pred EEEEEechhhccccccceEeecCCCCeEEEE----cCCEEEEEeeh
Confidence 7777532 24444443334455554 46799999874
No 453
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=90.49 E-value=1.5 Score=39.45 Aligned_cols=63 Identities=13% Similarity=0.097 Sum_probs=46.0
Q ss_pred EcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEe---------------eCCCCEEEEEECCCCCeEEEEEecCCCcEEE
Q 014934 341 WSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCM---------------DTGSQVCNLVWSKNVNELVSTHGYSQNQIIV 405 (415)
Q Consensus 341 ~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~---------------~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~v 405 (415)
+...++++++.. .+|.+++||+.+++.+..- .....|..+..+.+|.-+++. ++|..+.
T Consensus 18 l~~~~~~Ll~iT---~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~l---sng~~y~ 91 (219)
T PF07569_consen 18 LECNGSYLLAIT---SSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTL---SNGDSYS 91 (219)
T ss_pred EEeCCCEEEEEe---CCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEE---eCCCEEE
Confidence 344567777766 5999999999998765432 133568889999999888773 4678888
Q ss_pred EECC
Q 014934 406 WRYP 409 (415)
Q Consensus 406 w~~~ 409 (415)
|+..
T Consensus 92 y~~~ 95 (219)
T PF07569_consen 92 YSPD 95 (219)
T ss_pred eccc
Confidence 8754
No 454
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=90.31 E-value=4.8 Score=40.30 Aligned_cols=130 Identities=18% Similarity=0.183 Sum_probs=85.8
Q ss_pred CCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCC-------eEEEEECCCcEEEEECCC-CeeeEEecCCCccEEEEE
Q 014934 186 GNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNT-------HLAVGTSHGKVQIWDASR-CKRVRTMEGHRLRVGALA 257 (415)
Q Consensus 186 d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~-------~la~g~~dg~V~iwd~~~-~~~~~~l~~h~~~V~~l~ 257 (415)
...+|-.|+.-|+++....++ +.| -|.|.|..+ .-++|-.+..|.-.|.+- +..+.... ....++.-.
T Consensus 489 ~~kLykmDIErGkvveeW~~~--ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~e-sKdY~tKn~ 564 (776)
T COG5167 489 RDKLYKMDIERGKVVEEWDLK--DDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVE-SKDYKTKNK 564 (776)
T ss_pred cccceeeecccceeeeEeecC--Ccc-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeee-ehhcccccc
Confidence 357888899999998888743 334 566777532 334566676676667643 22222222 222333333
Q ss_pred ee------CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECC
Q 014934 258 WS------SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQH 321 (415)
Q Consensus 258 ~~------~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~ 321 (415)
|+ ..+++.|++.|-|++||--... ....+.+....|..+..+.+|+++++.+. +.|.+-|++
T Consensus 565 Fss~~tTesGyIa~as~kGDirLyDRig~r-AKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~ 632 (776)
T COG5167 565 FSSGMTTESGYIAAASRKGDIRLYDRIGKR-AKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDVP 632 (776)
T ss_pred ccccccccCceEEEecCCCceeeehhhcch-hhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEecc
Confidence 33 5799999999999999954433 34556677889999999999998776554 467777764
No 455
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=90.07 E-value=20 Score=35.08 Aligned_cols=42 Identities=12% Similarity=-0.020 Sum_probs=22.8
Q ss_pred eEEEEECCCCCeEEeEecCCCCC-eEEEEEcCCCCeEEEEECC
Q 014934 188 CVYLWNACSSKVTKLCDLGIDDS-VCSVGWANRNTHLAVGTSH 229 (415)
Q Consensus 188 ~V~iwd~~~~~~~~~~~~~~~~~-V~~v~~sp~g~~la~g~~d 229 (415)
.++.||..+.+...+........ -.+....-++++.+.|+.+
T Consensus 107 ~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~ 149 (376)
T PRK14131 107 DVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVN 149 (376)
T ss_pred cEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCC
Confidence 48888988877665542111111 1122221477888888754
No 456
>PLN02193 nitrile-specifier protein
Probab=89.57 E-value=26 Score=35.58 Aligned_cols=177 Identities=12% Similarity=0.038 Sum_probs=87.8
Q ss_pred eEEEEECCCCCeEEeEecC-CC--CCeEEEEEcCCCCeEEEEECC-----CcEEEEECCCCeee--EEec---CCCccEE
Q 014934 188 CVYLWNACSSKVTKLCDLG-ID--DSVCSVGWANRNTHLAVGTSH-----GKVQIWDASRCKRV--RTME---GHRLRVG 254 (415)
Q Consensus 188 ~V~iwd~~~~~~~~~~~~~-~~--~~V~~v~~sp~g~~la~g~~d-----g~V~iwd~~~~~~~--~~l~---~h~~~V~ 254 (415)
.++.||..+.+.......+ .. .........-++.+.+.|+.+ ..+..||+.+.+-. ..+. .......
T Consensus 194 ~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~ 273 (470)
T PLN02193 194 HLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHS 273 (470)
T ss_pred cEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceE
Confidence 4888998887665432111 01 111111122356667777654 35888998775422 2221 0111122
Q ss_pred EEEeeCCEEEEEeCCC-----cEEEEECCCCCccEEEecc------ccCCeEEEEEeCCCCEEEEEeCC----CcEEEEE
Q 014934 255 ALAWSSSLLSSGSRDK-----SILQRDIRAQEDFVSKLSG------HKSEVCGLKWSYDNRELASGGND----NRLFVWN 319 (415)
Q Consensus 255 ~l~~~~~~l~sgs~dg-----~I~iwd~~~~~~~~~~~~~------h~~~V~~l~~spdg~~lasg~~d----g~I~iwd 319 (415)
.+...+.+++.|+.++ .+..||+.+.. ...+.. .... .+++. -++++++.|+.+ +.|.+||
T Consensus 274 ~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~~~~R~~-~~~~~-~~gkiyviGG~~g~~~~dv~~yD 349 (470)
T PLN02193 274 MAADEENVYVFGGVSATARLKTLDSYNIVDKK--WFHCSTPGDSFSIRGG-AGLEV-VQGKVWVVYGFNGCEVDDVHYYD 349 (470)
T ss_pred EEEECCEEEEECCCCCCCCcceEEEEECCCCE--EEeCCCCCCCCCCCCC-cEEEE-ECCcEEEEECCCCCccCceEEEE
Confidence 2334466777777553 46778877654 111111 1111 11222 267777777755 4689999
Q ss_pred CCCCceeEEecc----CC-CcEEEEEEcCCCCcEEEEEcCCC------------CCeEEEEECCCCcEE
Q 014934 320 QHSTQPVLKYCE----HT-AAVKAIAWSPHLHGLLASGGGTA------------DRCIRFWNTTTNTHL 371 (415)
Q Consensus 320 ~~~~~~~~~~~~----h~-~~V~~l~~sp~~~~llasggg~~------------d~~I~iwd~~t~~~~ 371 (415)
+.+.+-.. +.. .. ....+++. .+..+++.||... ...+.++|+.+.+-.
T Consensus 350 ~~t~~W~~-~~~~g~~P~~R~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~ 415 (470)
T PLN02193 350 PVQDKWTQ-VETFGVRPSERSVFASAA--VGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWE 415 (470)
T ss_pred CCCCEEEE-eccCCCCCCCcceeEEEE--ECCEEEEECCccCCccccccCccceeccEEEEEcCcCEEE
Confidence 98765432 211 11 11112221 1345887776211 124788998877543
No 457
>PLN02153 epithiospecifier protein
Probab=89.50 E-value=18 Score=34.80 Aligned_cols=134 Identities=11% Similarity=0.075 Sum_probs=68.6
Q ss_pred eEEEEECCCCCeEEeEecC----CCCCeEEEEEcCCCCeEEEEECC-----------CcEEEEECCCCeee--EEec---
Q 014934 188 CVYLWNACSSKVTKLCDLG----IDDSVCSVGWANRNTHLAVGTSH-----------GKVQIWDASRCKRV--RTME--- 247 (415)
Q Consensus 188 ~V~iwd~~~~~~~~~~~~~----~~~~V~~v~~sp~g~~la~g~~d-----------g~V~iwd~~~~~~~--~~l~--- 247 (415)
.+++||..+.+...+-.+. ........+..-+++..+.|+.+ ..|.+||..+.+=. ....
T Consensus 102 ~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~ 181 (341)
T PLN02153 102 DFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENF 181 (341)
T ss_pred cEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCC
Confidence 6889999887765543221 11111222223356777777653 24778898765322 1111
Q ss_pred CCCccEEEEEeeCCEEEEEeCC-------------CcEEEEECCCCCccEEEecc----c-cCCeEEEEEeCCCCEEEEE
Q 014934 248 GHRLRVGALAWSSSLLSSGSRD-------------KSILQRDIRAQEDFVSKLSG----H-KSEVCGLKWSYDNRELASG 309 (415)
Q Consensus 248 ~h~~~V~~l~~~~~~l~sgs~d-------------g~I~iwd~~~~~~~~~~~~~----h-~~~V~~l~~spdg~~lasg 309 (415)
..........+.+++++.|+.+ ..+.+||+.+.. -..+.. . .....++. .-++++++.|
T Consensus 182 ~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~--W~~~~~~g~~P~~r~~~~~~-~~~~~iyv~G 258 (341)
T PLN02153 182 EKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGK--WTEVETTGAKPSARSVFAHA-VVGKYIIIFG 258 (341)
T ss_pred CCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCc--EEeccccCCCCCCcceeeeE-EECCEEEEEC
Confidence 1111223344556666665532 458889987765 222211 1 01112222 2356777787
Q ss_pred eCC--------------CcEEEEECCCCc
Q 014934 310 GND--------------NRLFVWNQHSTQ 324 (415)
Q Consensus 310 ~~d--------------g~I~iwd~~~~~ 324 (415)
+.. +.|..+|+.+.+
T Consensus 259 G~~~~~~~~~~~~~~~~n~v~~~d~~~~~ 287 (341)
T PLN02153 259 GEVWPDLKGHLGPGTLSNEGYALDTETLV 287 (341)
T ss_pred cccCCccccccccccccccEEEEEcCccE
Confidence 752 257788876653
No 458
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=89.48 E-value=16 Score=33.08 Aligned_cols=210 Identities=14% Similarity=0.122 Sum_probs=107.7
Q ss_pred CcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCC--CeEEEEECCC-cEEEEECC--CCeeeEEecCC--
Q 014934 178 HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRN--THLAVGTSHG-KVQIWDAS--RCKRVRTMEGH-- 249 (415)
Q Consensus 178 ~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g--~~la~g~~dg-~V~iwd~~--~~~~~~~l~~h-- 249 (415)
+.++-+- ..+.|.-||..+.++.+...-+ ..+.++.+--.| +..+++.... .|.-||.. ..+..+++..-
T Consensus 27 ~sLl~VDi~ag~v~r~D~~qn~v~ra~ie~--p~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~ 104 (310)
T KOG4499|consen 27 QSLLYVDIEAGEVHRYDIEQNKVYRAKIEG--PPSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQP 104 (310)
T ss_pred ceEEEEEeccCceehhhhhhhheEEEEEec--CcceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCc
Confidence 4566666 3577888998887765544312 224444443322 2344443332 34457632 23333442211
Q ss_pred ---CccEEEEEee--CCEEEEEeC----------CCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEE-EeCCC
Q 014934 250 ---RLRVGALAWS--SSLLSSGSR----------DKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELAS-GGNDN 313 (415)
Q Consensus 250 ---~~~V~~l~~~--~~~l~sgs~----------dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~las-g~~dg 313 (415)
..+.+.-..+ +++ ..|.. .|.++.|-.... +..+...-.--++|+|+.+.+.+.. -+.+-
T Consensus 105 d~kknR~NDgkvdP~Gry-y~GtMad~~~~le~~~g~Ly~~~~~h~---v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~ 180 (310)
T KOG4499|consen 105 DRKKNRLNDGKVDPDGRY-YGGTMADFGDDLEPIGGELYSWLAGHQ---VELIWNCVGISNGLAWDSDAKKFYYIDSLNY 180 (310)
T ss_pred hHHhcccccCccCCCCce-eeeeeccccccccccccEEEEeccCCC---ceeeehhccCCccccccccCcEEEEEccCce
Confidence 1222222222 334 33332 133444433221 1222222223467899987776654 45566
Q ss_pred cEEEEE--CCCC-----ceeEEeccC---C-CcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEeeC-CCCEE
Q 014934 314 RLFVWN--QHST-----QPVLKYCEH---T-AAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDT-GSQVC 381 (415)
Q Consensus 314 ~I~iwd--~~~~-----~~~~~~~~h---~-~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~~-~~~V~ 381 (415)
.|.-|| ..++ +.+..++.. . -..-.++....|...+++- ..++|...|..+|+.+.++.- ..+|+
T Consensus 181 ~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~---ng~~V~~~dp~tGK~L~eiklPt~qit 257 (310)
T KOG4499|consen 181 EVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATF---NGGTVQKVDPTTGKILLEIKLPTPQIT 257 (310)
T ss_pred EEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEe---cCcEEEEECCCCCcEEEEEEcCCCceE
Confidence 776677 4444 333333321 0 1112344455666444444 478999999999999999984 56799
Q ss_pred EEEECC-CCCeEEEEE
Q 014934 382 NLVWSK-NVNELVSTH 396 (415)
Q Consensus 382 ~l~~s~-~~~~l~s~~ 396 (415)
+++|-- +-..|++++
T Consensus 258 sccFgGkn~d~~yvT~ 273 (310)
T KOG4499|consen 258 SCCFGGKNLDILYVTT 273 (310)
T ss_pred EEEecCCCccEEEEEe
Confidence 999964 345555543
No 459
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=89.19 E-value=0.45 Score=50.27 Aligned_cols=111 Identities=15% Similarity=0.131 Sum_probs=63.9
Q ss_pred ceeEeecCC---C-cEEEEEc-CCeEEEEECCCCCeEEeEecCCCCCeEEE-----------EEcCCCCeEEEEECCCcE
Q 014934 169 YLNLVDWSS---H-NVLAVGL-GNCVYLWNACSSKVTKLCDLGIDDSVCSV-----------GWANRNTHLAVGTSHGKV 232 (415)
Q Consensus 169 ~i~~l~ws~---~-~~la~~~-d~~V~iwd~~~~~~~~~~~~~~~~~V~~v-----------~~sp~g~~la~g~~dg~V 232 (415)
++..|.|.| + -.+.++. ++.|++.++..... .++. +|...++.+ ..+|||+.+|.++.||.|
T Consensus 182 ~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~r-sHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v 259 (1283)
T KOG1916|consen 182 DPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFR-SHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSV 259 (1283)
T ss_pred CcceeeecccccccceeeeccCCCceeEeeechHHH-HHHH-hcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCcc
Confidence 446677776 2 3444453 46777766655332 2222 354444433 368999999999999999
Q ss_pred EEEECC-----CCeeeEEecCCC-ccEEEEEeeC-----------CEEEEE-eCCCcEEEEECCCCC
Q 014934 233 QIWDAS-----RCKRVRTMEGHR-LRVGALAWSS-----------SLLSSG-SRDKSILQRDIRAQE 281 (415)
Q Consensus 233 ~iwd~~-----~~~~~~~l~~h~-~~V~~l~~~~-----------~~l~sg-s~dg~I~iwd~~~~~ 281 (415)
+.|.+. ..+++...+.|. .+-.|.-++. .+++++ ..++.+++|....-.
T Consensus 260 ~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~ 326 (1283)
T KOG1916|consen 260 GFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQ 326 (1283)
T ss_pred ceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchh
Confidence 998763 223445555665 3333333431 133333 445668888765443
No 460
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=89.15 E-value=16 Score=32.61 Aligned_cols=103 Identities=11% Similarity=0.160 Sum_probs=61.4
Q ss_pred CEEEEEeCCCcEEEEECC--CCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCC---eEEEE-ECCC----CcEE--
Q 014934 304 RELASGGNDNRLFVWNQH--STQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADR---CIRFW-NTTT----NTHL-- 371 (415)
Q Consensus 304 ~~lasg~~dg~I~iwd~~--~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~---~I~iw-d~~t----~~~~-- 371 (415)
+.|..+...+.|.+|++. ..+++.+|. --+.|..++++..|.++++.=...... .+|+| |.+. .+++
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~-Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFS-TVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEc-chhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 344343556779999988 345677774 448899999999999776654321223 56665 2211 1111
Q ss_pred -------------------E--EeeCCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCC
Q 014934 372 -------------------S--CMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPT 410 (415)
Q Consensus 372 -------------------~--~~~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s 410 (415)
. ++.-..++.+++..|-...|+. | .++.+.+|.+..
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlV--g-~~~~l~lf~l~~ 164 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLV--G-CGNKLVLFTLKY 164 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEE--E-cCCEEEEEEEEE
Confidence 1 1112345667777775444555 3 467899998753
No 461
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.95 E-value=0.99 Score=48.99 Aligned_cols=112 Identities=13% Similarity=0.170 Sum_probs=73.1
Q ss_pred CeEEEEEeCCCCEEEEEe--CCCcEEEEECCCCc--------eeEE---eccCCCcEEEEEEcCCCCcEEEEEcCCCCCe
Q 014934 293 EVCGLKWSYDNRELASGG--NDNRLFVWNQHSTQ--------PVLK---YCEHTAAVKAIAWSPHLHGLLASGGGTADRC 359 (415)
Q Consensus 293 ~V~~l~~spdg~~lasg~--~dg~I~iwd~~~~~--------~~~~---~~~h~~~V~~l~~sp~~~~llasggg~~d~~ 359 (415)
.|..+...+|+...++.. ++-.|..||+++-. ++.. ......-+.++.|.|.-....+.+. .|+.
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l--~dls 179 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDL--SDLS 179 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhc--cccc
Confidence 455556667766655533 44478999987532 1111 0112234567889887554444444 6999
Q ss_pred EEEEECCCCc-EEEEeeCCCCEEEEEECCCCCeEEEEEecCCCcEEEEEC
Q 014934 360 IRFWNTTTNT-HLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRY 408 (415)
Q Consensus 360 I~iwd~~t~~-~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~ 408 (415)
|++..+.... .+..+.....+++++|+|.|+.++. |...|++.-|..
T Consensus 180 l~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~i--G~nnGt~vQy~P 227 (1405)
T KOG3630|consen 180 LRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFI--GRNNGTEVQYEP 227 (1405)
T ss_pred hhhhhhhhhhhhhcccCcccceeeEEeccccceeeE--ecCCCeEEEeec
Confidence 9998775432 3334456677899999999999999 888999888764
No 462
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=88.91 E-value=2.6 Score=36.34 Aligned_cols=31 Identities=26% Similarity=0.324 Sum_probs=25.5
Q ss_pred CCeEEEEEeCCC------CEEEEEeCCCcEEEEECCC
Q 014934 292 SEVCGLKWSYDN------RELASGGNDNRLFVWNQHS 322 (415)
Q Consensus 292 ~~V~~l~~spdg------~~lasg~~dg~I~iwd~~~ 322 (415)
..|.+++|||.| -+||+...++.|.||....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 379999999944 3688999999999998654
No 463
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.84 E-value=13 Score=41.48 Aligned_cols=105 Identities=10% Similarity=0.117 Sum_probs=51.0
Q ss_pred ceeEeecCC-CcEEEEE-cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEe
Q 014934 169 YLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTM 246 (415)
Q Consensus 169 ~i~~l~ws~-~~~la~~-~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l 246 (415)
....+++++ ..++|++ ..|.|+++....-+..........-.++-+.|-.......+...+..+.+|.......+.
T Consensus 37 ~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~-- 114 (993)
T KOG1983|consen 37 TPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEFVGLHPKQNQINVTRIELLVGISRNLVLSDDDSLHLWSIKIKTGVF-- 114 (993)
T ss_pred CCcceeeccccceEEEEEecccEEEecccceEEEeccccccchhhhheeeeecccccceeecccceeeecccccceee--
Confidence 345677888 7899998 578999997544332222211111122222222222223333444455555543221111
Q ss_pred cCCCccEEEEEeeC--CEEEEEeCCCcEEEEECCC
Q 014934 247 EGHRLRVGALAWSS--SLLSSGSRDKSILQRDIRA 279 (415)
Q Consensus 247 ~~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~ 279 (415)
+...+++..-.+ .. +-| ..+.+++||+.-
T Consensus 115 --~~~~~~~~~~~~~~~~-~~g-~~~~~~~~~~~~ 145 (993)
T KOG1983|consen 115 --LKQEITSFVTDPPPDW-LIG-ENGLVKVSDVLR 145 (993)
T ss_pred --cCCcceeccCCCCcch-hcc-cCceeeEeeech
Confidence 222333333332 34 455 888888888754
No 464
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=88.77 E-value=39 Score=37.67 Aligned_cols=177 Identities=15% Similarity=0.150 Sum_probs=100.7
Q ss_pred cCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcC-------C--CCeEEEEEC---------CCcEEEEECCC-----Ce
Q 014934 185 LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWAN-------R--NTHLAVGTS---------HGKVQIWDASR-----CK 241 (415)
Q Consensus 185 ~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp-------~--g~~la~g~~---------dg~V~iwd~~~-----~~ 241 (415)
....|.+.+..+.+++..+++...+.|++++..- . ..+||+|+. .|.+.|+|+-. ++
T Consensus 1002 ~~f~i~LisP~sw~vi~~iefq~~E~v~~~k~v~L~~~~t~~~~k~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgk 1081 (1366)
T KOG1896|consen 1002 EQFSIQLISPESWEVIDKIEFQENEHVLHMKYVILDDEETTKGKKPYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGK 1081 (1366)
T ss_pred ccceeEEecCCccccccccccCccceeeEEEEEEEEecccccCCcceEEEEEeecccccccCcccEEEEEEEEecCCCCC
Confidence 3445777777777776667776667777776532 1 248999864 48899999722 21
Q ss_pred -----eeEEe--cCCCccEEEEEeeCCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeCCCc
Q 014934 242 -----RVRTM--EGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNR 314 (415)
Q Consensus 242 -----~~~~l--~~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~ 314 (415)
.++.+ +...+.|..++=-..+|++|. ...|.+|++......+-.-. -.-++.-....--+++|+.|.--..
T Consensus 1082 P~t~~KlKel~~eE~KGtVsavceV~G~l~~~~-GqKI~v~~l~r~~~ligVaF-iD~~~yv~s~~~vknlIl~gDV~ks 1159 (1366)
T KOG1896|consen 1082 PFTKNKLKELYIEEQKGTVSAVCEVRGHLLSSQ-GQKIIVRKLDRDSELIGVAF-IDLPLYVHSMKVVKNLILAGDVMKS 1159 (1366)
T ss_pred CcccceeeeeehhhcccceEEEEEeccEEEEcc-CcEEEEEEeccCCcceeeEE-eccceeEEehhhhhhheehhhhhhc
Confidence 12221 245678888776656666653 34699999954432221111 1122333333334566776665555
Q ss_pred EEEEECCCC-ceeEEec--cCCCcEEEEEEcCCCCcEE-EEEcCCCCCeEEEEEC
Q 014934 315 LFVWNQHST-QPVLKYC--EHTAAVKAIAWSPHLHGLL-ASGGGTADRCIRFWNT 365 (415)
Q Consensus 315 I~iwd~~~~-~~~~~~~--~h~~~V~~l~~sp~~~~ll-asggg~~d~~I~iwd~ 365 (415)
|.+.-.... ..+.-+. ...-.+.++.|--+|..|- +++. .|+.|+++-.
T Consensus 1160 isfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg~~L~flvsD--a~rNi~vy~Y 1212 (1366)
T KOG1896|consen 1160 ISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLVSD--ADRNIHVYMY 1212 (1366)
T ss_pred eEEEEEccCceEEEEeecCCchhhceeeeeEEcCCeeEEEEEc--CCCcEEEEEe
Confidence 555444322 1122221 1223477888887777653 3333 7899988744
No 465
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=88.49 E-value=16 Score=34.84 Aligned_cols=83 Identities=18% Similarity=0.162 Sum_probs=45.1
Q ss_pred CeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCC----cEEEEECCCCee--eEEec-CC-Cc---cEEE
Q 014934 187 NCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHG----KVQIWDASRCKR--VRTME-GH-RL---RVGA 255 (415)
Q Consensus 187 ~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg----~V~iwd~~~~~~--~~~l~-~h-~~---~V~~ 255 (415)
..++.||..+.+...+-.+.............++++.+.|+.++ .+.+||..+.+- +..+. .. .. ....
T Consensus 139 ~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~ 218 (323)
T TIGR03548 139 NKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAAS 218 (323)
T ss_pred ceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceeccceeE
Confidence 46899999988876654332212222233344677888887654 356889876542 22211 01 10 1222
Q ss_pred EEee-CCEEEEEeCC
Q 014934 256 LAWS-SSLLSSGSRD 269 (415)
Q Consensus 256 l~~~-~~~l~sgs~d 269 (415)
+... +.+++.|+.+
T Consensus 219 ~~~~~~~iyv~GG~~ 233 (323)
T TIGR03548 219 IKINESLLLCIGGFN 233 (323)
T ss_pred EEECCCEEEEECCcC
Confidence 3333 5677888766
No 466
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=88.30 E-value=28 Score=34.43 Aligned_cols=107 Identities=7% Similarity=0.105 Sum_probs=68.7
Q ss_pred ccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCc-----eeEEecc--CCCcEEEEEEcCCCCcEEEEEcCCCCCeEEE
Q 014934 290 HKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQ-----PVLKYCE--HTAAVKAIAWSPHLHGLLASGGGTADRCIRF 362 (415)
Q Consensus 290 h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~-----~~~~~~~--h~~~V~~l~~sp~~~~llasggg~~d~~I~i 362 (415)
....+.++.|.+++.+++++ .+|.+. |....++ ....... -...+.++.|.+++. ++++| ..|.+..
T Consensus 279 ~~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~-~~a~G---~~G~v~~ 352 (398)
T PLN00033 279 SARRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKE-AWAAG---GSGILLR 352 (398)
T ss_pred CccceeeeeEcCCCCEEEEe-CCceEE-EecCCCCcccccceeecccCCCCcceEEEEEcCCCc-EEEEE---CCCcEEE
Confidence 34568899999999887766 556544 3444443 2222211 123588999998876 77777 4776665
Q ss_pred EECCCCcEEEEee----CCCCEEEEEECCCCCeEEEEEecCCCcEEEE
Q 014934 363 WNTTTNTHLSCMD----TGSQVCNLVWSKNVNELVSTHGYSQNQIIVW 406 (415)
Q Consensus 363 wd~~t~~~~~~~~----~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw 406 (415)
. ...|+...... .....+.+.|..+++-+++ | .+|.|.-|
T Consensus 353 s-~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~--G-~~G~il~~ 396 (398)
T PLN00033 353 S-TDGGKSWKRDKGADNIAANLYSVKFFDDKKGFVL--G-NDGVLLRY 396 (398)
T ss_pred e-CCCCcceeEccccCCCCcceeEEEEcCCCceEEE--e-CCcEEEEe
Confidence 5 45565544443 2346889999888888877 5 67877655
No 467
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=87.48 E-value=7.3 Score=29.58 Aligned_cols=41 Identities=7% Similarity=-0.002 Sum_probs=32.0
Q ss_pred CCCeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEEEE
Q 014934 356 ADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTH 396 (415)
Q Consensus 356 ~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~ 396 (415)
.+|.+.-||..+++....++.-...++++.++|+..++.+-
T Consensus 35 ~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~E 75 (89)
T PF03088_consen 35 PTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAE 75 (89)
T ss_dssp --EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEE
T ss_pred CCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEe
Confidence 67899999999998766666667889999999999888853
No 468
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.33 E-value=11 Score=37.31 Aligned_cols=137 Identities=10% Similarity=0.133 Sum_probs=85.5
Q ss_pred EEEEcCCCCeEEEEECCCcEEEEECCCC--eeeEEe-cCCCccEEEEEee--CCEEEEEeCCCcEEEEECCCCCc---cE
Q 014934 213 SVGWANRNTHLAVGTSHGKVQIWDASRC--KRVRTM-EGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQED---FV 284 (415)
Q Consensus 213 ~v~~sp~g~~la~g~~dg~V~iwd~~~~--~~~~~l-~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~---~~ 284 (415)
.+-|. |.+..+.+...|.+.=|-+.-. .....+ ....++|.++.|+ ...|++--.|.+|.+++....+. ..
T Consensus 27 gvFfD-DaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~ 105 (657)
T KOG2377|consen 27 GVFFD-DANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYT 105 (657)
T ss_pred ceeec-cCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHH
Confidence 34343 3333444455556666665422 112222 2345689999999 46888888999999998844332 12
Q ss_pred EEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCC-ceeEEeccCCCcEEEEEEcCCCCcEEEEE
Q 014934 285 SKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHST-QPVLKYCEHTAAVKAIAWSPHLHGLLASG 352 (415)
Q Consensus 285 ~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~-~~~~~~~~h~~~V~~l~~sp~~~~llasg 352 (415)
.+.+.....|.+..|+.+ .-+|.-.+.| +-+|-.... +.+...+.|...|+--.|+++..-+|.+.
T Consensus 106 ~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t 172 (657)
T KOG2377|consen 106 QECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLST 172 (657)
T ss_pred HHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeec
Confidence 233334456999999965 6677766666 666665432 34455567888999999999887544443
No 469
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=86.90 E-value=6.1 Score=39.02 Aligned_cols=157 Identities=18% Similarity=0.086 Sum_probs=95.7
Q ss_pred CCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCee-eEEe-cCCCc----cEE-EEE-ee-CCEEEEEeCCCcEEEE-EC
Q 014934 208 DDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKR-VRTM-EGHRL----RVG-ALA-WS-SSLLSSGSRDKSILQR-DI 277 (415)
Q Consensus 208 ~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~-~~~l-~~h~~----~V~-~l~-~~-~~~l~sgs~dg~I~iw-d~ 277 (415)
...|..+-..|||+.|.+-+. ..+.++++.+... .+.+ ....+ .|+ .+. .. +.-|++++.||.|..| |+
T Consensus 220 ~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdv 298 (733)
T COG4590 220 FSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDV 298 (733)
T ss_pred ccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeee
Confidence 466788889999998877655 5788998865321 1111 11111 122 111 12 4578889999999888 66
Q ss_pred CCCCcc----EEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEc
Q 014934 278 RAQEDF----VSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGG 353 (415)
Q Consensus 278 ~~~~~~----~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasgg 353 (415)
+..... ++.+.-...++.-+.-..+.+-+++-...|.+.++.....+.+.. +.--..+.-+++||++.+++.-
T Consensus 299 r~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~-~~~~~~~~~~~~Sp~~~~Ll~e-- 375 (733)
T COG4590 299 RRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLF-ERAYQAPQLVAMSPNQAYLLSE-- 375 (733)
T ss_pred ecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceeh-hhhhcCcceeeeCcccchheee--
Confidence 654421 111221223444443333455678888888888887655554432 2333466778999999977763
Q ss_pred CCCCCeEEEEECCCCcE
Q 014934 354 GTADRCIRFWNTTTNTH 370 (415)
Q Consensus 354 g~~d~~I~iwd~~t~~~ 370 (415)
..|.|+++.+.+..+
T Consensus 376 --~~gki~~~~l~Nr~P 390 (733)
T COG4590 376 --DQGKIRLAQLENRNP 390 (733)
T ss_pred --cCCceEEEEecCCCC
Confidence 357899998876543
No 470
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=85.97 E-value=38 Score=33.71 Aligned_cols=61 Identities=10% Similarity=0.193 Sum_probs=39.2
Q ss_pred CcEEEEEcCCCCCeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCC
Q 014934 346 HGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPT 410 (415)
Q Consensus 346 ~~llasggg~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s 410 (415)
+.++..-+ .||.+.||+-+.-.....+..---.--+.|.+....+++ ..+...|.-|+|..
T Consensus 145 ~~~IcVQS--~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt--~sss~~l~~Yky~~ 205 (418)
T PF14727_consen 145 RDFICVQS--MDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVT--ASSSWTLECYKYQD 205 (418)
T ss_pred ceEEEEEe--cCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEE--ecCceeEEEecHHH
Confidence 34555554 899999999775543333332222233778888888887 45667888888754
No 471
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=85.84 E-value=13 Score=34.80 Aligned_cols=115 Identities=14% Similarity=0.246 Sum_probs=66.4
Q ss_pred CCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEe------CCCcEEEEECCCCceeEEecc-----CCCcEE
Q 014934 269 DKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGG------NDNRLFVWNQHSTQPVLKYCE-----HTAAVK 337 (415)
Q Consensus 269 dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~------~dg~I~iwd~~~~~~~~~~~~-----h~~~V~ 337 (415)
-..|++||....+ ....-.+-.+.|.+|.|..+.++++.|. ....+..||+.+.... .+.. -.++|.
T Consensus 15 C~~lC~yd~~~~q-W~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~-~~~~~~s~~ipgpv~ 92 (281)
T PF12768_consen 15 CPGLCLYDTDNSQ-WSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWS-SLGGGSSNSIPGPVT 92 (281)
T ss_pred CCEEEEEECCCCE-eecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeee-ecCCcccccCCCcEE
Confidence 3459999987765 2233334567899999996666777664 3556889998876432 2322 236788
Q ss_pred EEEEcCC-CCcEEEEEcC-CCCCeEEEEECCCCcEEEE--eeCCCCEEEEEE
Q 014934 338 AIAWSPH-LHGLLASGGG-TADRCIRFWNTTTNTHLSC--MDTGSQVCNLVW 385 (415)
Q Consensus 338 ~l~~sp~-~~~llasggg-~~d~~I~iwd~~t~~~~~~--~~~~~~V~~l~~ 385 (415)
++.+... +..+.+.|.. ..+..|..||-.+-..+.. +..+..|..+.+
T Consensus 93 a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~ 144 (281)
T PF12768_consen 93 ALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQV 144 (281)
T ss_pred EEEeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEE
Confidence 8877433 3345554431 1244577776554333332 122344555443
No 472
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=85.77 E-value=15 Score=34.39 Aligned_cols=89 Identities=19% Similarity=0.308 Sum_probs=59.3
Q ss_pred CeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEE------CCCcEEEEECCCCeeeEEecC-----CCccEEE
Q 014934 187 NCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGT------SHGKVQIWDASRCKRVRTMEG-----HRLRVGA 255 (415)
Q Consensus 187 ~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~------~dg~V~iwd~~~~~~~~~l~~-----h~~~V~~ 255 (415)
..|++||..+.+....-. +-.+.|+++.|..+.+.++.|. ....+..||..+.. ...+.+ -.++|..
T Consensus 16 ~~lC~yd~~~~qW~~~g~-~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~-w~~~~~~~s~~ipgpv~a 93 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGN-GISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT-WSSLGGGSSNSIPGPVTA 93 (281)
T ss_pred CEEEEEECCCCEeecCCC-CceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe-eeecCCcccccCCCcEEE
Confidence 469999999888776654 4578999999997777777774 34568889987754 333433 2477888
Q ss_pred EEee---C-CEEEEEe-CCC--cEEEEEC
Q 014934 256 LAWS---S-SLLSSGS-RDK--SILQRDI 277 (415)
Q Consensus 256 l~~~---~-~~l~sgs-~dg--~I~iwd~ 277 (415)
+.+. . ++.+.|. .++ .|..||=
T Consensus 94 ~~~~~~d~~~~~~aG~~~~g~~~l~~~dG 122 (281)
T PF12768_consen 94 LTFISNDGSNFWVAGRSANGSTFLMKYDG 122 (281)
T ss_pred EEeeccCCceEEEeceecCCCceEEEEcC
Confidence 8774 3 3444443 333 3556653
No 473
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=85.76 E-value=33 Score=32.54 Aligned_cols=219 Identities=14% Similarity=0.032 Sum_probs=113.0
Q ss_pred cEEEEEcCCeEEEEECCC--CCeEEeEecCCCCCeEEEEEcCCCCeEEEEE-CCCcEEEEECCCCee-------------
Q 014934 179 NVLAVGLGNCVYLWNACS--SKVTKLCDLGIDDSVCSVGWANRNTHLAVGT-SHGKVQIWDASRCKR------------- 242 (415)
Q Consensus 179 ~~la~~~d~~V~iwd~~~--~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~-~dg~V~iwd~~~~~~------------- 242 (415)
+.|..|.+..+++.+... ++..++. +...|+++...+.-+.|++-+ ....++.+++..-..
T Consensus 14 ~~lL~GTe~Gly~~~~~~~~~~~~kl~---~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~~ 90 (302)
T smart00036 14 KWLLVGTEEGLYVLNISDQPGTLEKLI---GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVIR 90 (302)
T ss_pred cEEEEEeCCceEEEEcccCCCCeEEec---CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCcccccc
Confidence 579999999999998765 3444444 467899999998777655543 334499999832211
Q ss_pred ---eEEecCCCccEEEEEee-C--CEEEEEeCCCcEEEEECCCCCccEEEec-------cccCCeEEEEEeCC--CCEEE
Q 014934 243 ---VRTMEGHRLRVGALAWS-S--SLLSSGSRDKSILQRDIRAQEDFVSKLS-------GHKSEVCGLKWSYD--NRELA 307 (415)
Q Consensus 243 ---~~~l~~h~~~V~~l~~~-~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~-------~h~~~V~~l~~spd--g~~la 307 (415)
...+ +|.......... + ..++++....+|.++......+....+. --..++..+..+++ ...+.
T Consensus 91 ~~~~~~~-~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~lc 169 (302)
T smart00036 91 KNVLTKI-PDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGIC 169 (302)
T ss_pred ccceEeC-CcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEEE
Confidence 1111 233323323332 2 2445555666777765433211111111 01123333333333 45677
Q ss_pred EEeCCCcEEEEECCC--Cce----eEE-eccCC-CcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcE--EEEeeCC
Q 014934 308 SGGNDNRLFVWNQHS--TQP----VLK-YCEHT-AAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTH--LSCMDTG 377 (415)
Q Consensus 308 sg~~dg~I~iwd~~~--~~~----~~~-~~~h~-~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~--~~~~~~~ 377 (415)
.|+..+...++++.. ... +.. ..... .++.... -+++. +|.+ .|....+-|...... ...+.-.
T Consensus 170 vG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~-l~~~e-~Llc----~~~~~v~Vn~~G~~~~r~~~l~w~ 243 (302)
T smart00036 170 IGSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQ-VPRDE-FLLC----YDEFGVFVNLYGKRRSRNPILHWE 243 (302)
T ss_pred EEEcCCCCeEEEEeecccccccccccccccccccCceEEEE-ECCCe-EEEE----ECcEEEEEeCCCCccccceEEEcC
Confidence 776643344555432 110 000 00111 2333333 33444 4443 466777777763121 2234445
Q ss_pred CCEEEEEECCCCCeEEEEEecCCCcEEEEECCCCc
Q 014934 378 SQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMS 412 (415)
Q Consensus 378 ~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~ 412 (415)
....++++.. .+|++. .++.|.|+++.+++
T Consensus 244 ~~p~~~~~~~--pyll~~---~~~~ievr~l~~~~ 273 (302)
T smart00036 244 FMPESFAYHS--PYLLAF---HDNGIEIRSIKTGE 273 (302)
T ss_pred CcccEEEEEC--CEEEEE---cCCcEEEEECCCCc
Confidence 5566777763 566653 46679999998764
No 474
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=85.57 E-value=15 Score=40.99 Aligned_cols=139 Identities=14% Similarity=0.179 Sum_probs=80.1
Q ss_pred EEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEc--------CCCCeEEEEECCCcEEEEECCC----Cee---e--EE
Q 014934 183 VGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWA--------NRNTHLAVGTSHGKVQIWDASR----CKR---V--RT 245 (415)
Q Consensus 183 ~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~s--------p~g~~la~g~~dg~V~iwd~~~----~~~---~--~~ 245 (415)
...|+.+++|+.+++.....+. +-...|..|..- |.=+++++-..--.|.|+-+.- +.. . -.
T Consensus 95 iTiDn~L~lWny~~~~e~~~~d-~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~ 173 (1311)
T KOG1900|consen 95 ITIDNNLFLWNYESDNELAEYD-GLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFK 173 (1311)
T ss_pred EEeCCeEEEEEcCCCCcccccc-chhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCccccccccee
Confidence 3458999999999865555554 334456666542 2223444433344566654421 110 0 11
Q ss_pred ecCCCccEEEEEee-CCEEEEEeCCCcEEEE--ECCCCC-------------------ccEEEec-cccCCeEEEEEeCC
Q 014934 246 MEGHRLRVGALAWS-SSLLSSGSRDKSILQR--DIRAQE-------------------DFVSKLS-GHKSEVCGLKWSYD 302 (415)
Q Consensus 246 l~~h~~~V~~l~~~-~~~l~sgs~dg~I~iw--d~~~~~-------------------~~~~~~~-~h~~~V~~l~~spd 302 (415)
+......|.|+... ...++-+|+||.|+-. ....+- ..+-.+. .+..+|..+.....
T Consensus 174 i~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~S 253 (1311)
T KOG1900|consen 174 ISVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNS 253 (1311)
T ss_pred eecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccc
Confidence 12234568888854 3444455566654422 111110 0011122 56779999999988
Q ss_pred CCEEEEEeCCCcEEEEECCC
Q 014934 303 NRELASGGNDNRLFVWNQHS 322 (415)
Q Consensus 303 g~~lasg~~dg~I~iwd~~~ 322 (415)
-+.|.+-+..++|.+||+..
T Consensus 254 R~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 254 RNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred cceeeeeccCceEEEEEccC
Confidence 88999999999999999975
No 475
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=85.53 E-value=19 Score=29.59 Aligned_cols=86 Identities=16% Similarity=0.170 Sum_probs=58.1
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEECCCC--------ceeEEeccCCCcEEEEEEcCC----CCcEEEEEcCCCCCeEEEEE
Q 014934 297 LKWSYDNRELASGGNDNRLFVWNQHST--------QPVLKYCEHTAAVKAIAWSPH----LHGLLASGGGTADRCIRFWN 364 (415)
Q Consensus 297 l~~spdg~~lasg~~dg~I~iwd~~~~--------~~~~~~~~h~~~V~~l~~sp~----~~~llasggg~~d~~I~iwd 364 (415)
-+|......|++++.-|+|.|++.... ..+..+ .-...|++|+--+- +.-+|+.|+ ...|..||
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~L-Nin~~italaaG~l~~~~~~D~LliGt---~t~llaYD 79 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFL-NINQEITALAAGRLKPDDGRDCLLIGT---QTSLLAYD 79 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEE-ECCCceEEEEEEecCCCCCcCEEEEec---cceEEEEE
Confidence 456666667889999999999987533 233333 34567777755442 344677774 78999999
Q ss_pred CCCCcEEEEeeCCCCEEEEEEC
Q 014934 365 TTTNTHLSCMDTGSQVCNLVWS 386 (415)
Q Consensus 365 ~~t~~~~~~~~~~~~V~~l~~s 386 (415)
+.....+...+....|.++.+-
T Consensus 80 V~~N~d~Fyke~~DGvn~i~~g 101 (136)
T PF14781_consen 80 VENNSDLFYKEVPDGVNAIVIG 101 (136)
T ss_pred cccCchhhhhhCccceeEEEEE
Confidence 9887766655556667776663
No 476
>PLN02193 nitrile-specifier protein
Probab=84.40 E-value=38 Score=34.37 Aligned_cols=133 Identities=12% Similarity=0.113 Sum_probs=71.3
Q ss_pred CeEEEEECCCCCeEEeEecC---CCCCeEEEEEcCCCCeEEEEECCC-----cEEEEECCCCeeeEEec------CCCcc
Q 014934 187 NCVYLWNACSSKVTKLCDLG---IDDSVCSVGWANRNTHLAVGTSHG-----KVQIWDASRCKRVRTME------GHRLR 252 (415)
Q Consensus 187 ~~V~iwd~~~~~~~~~~~~~---~~~~V~~v~~sp~g~~la~g~~dg-----~V~iwd~~~~~~~~~l~------~h~~~ 252 (415)
+.++.||..+.+...+.... ....-.++ ..-++++.+.|+.++ .+..||+.+.+-. .+. .....
T Consensus 244 ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~-~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~-~~~~~~~~~~~R~~ 321 (470)
T PLN02193 244 NGFYSFDTTTNEWKLLTPVEEGPTPRSFHSM-AADEENVYVFGGVSATARLKTLDSYNIVDKKWF-HCSTPGDSFSIRGG 321 (470)
T ss_pred ccEEEEECCCCEEEEcCcCCCCCCCccceEE-EEECCEEEEECCCCCCCCcceEEEEECCCCEEE-eCCCCCCCCCCCCC
Confidence 46889999888776554321 11111122 223566777776543 4678888765422 111 11112
Q ss_pred EEEEEeeCCEEEEEeCC----CcEEEEECCCCCccEEEeccc-----cCCeEEEEEeCCCCEEEEEeCC-----------
Q 014934 253 VGALAWSSSLLSSGSRD----KSILQRDIRAQEDFVSKLSGH-----KSEVCGLKWSYDNRELASGGND----------- 312 (415)
Q Consensus 253 V~~l~~~~~~l~sgs~d----g~I~iwd~~~~~~~~~~~~~h-----~~~V~~l~~spdg~~lasg~~d----------- 312 (415)
...+...+.+++.|+.+ ..+.+||+.+.. ...+... .....+++ .-++++++.|+.+
T Consensus 322 ~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~--W~~~~~~g~~P~~R~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~ 398 (470)
T PLN02193 322 AGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDK--WTQVETFGVRPSERSVFASA-AVGKHIVIFGGEIAMDPLAHVGPG 398 (470)
T ss_pred cEEEEECCcEEEEECCCCCccCceEEEECCCCE--EEEeccCCCCCCCcceeEEE-EECCEEEEECCccCCccccccCcc
Confidence 23334457777777765 458899998765 2222211 11112222 2356777787753
Q ss_pred ---CcEEEEECCCCc
Q 014934 313 ---NRLFVWNQHSTQ 324 (415)
Q Consensus 313 ---g~I~iwd~~~~~ 324 (415)
+.+.+||+.+.+
T Consensus 399 ~~~ndv~~~D~~t~~ 413 (470)
T PLN02193 399 QLTDGTFALDTETLQ 413 (470)
T ss_pred ceeccEEEEEcCcCE
Confidence 247888887654
No 477
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=83.37 E-value=6 Score=24.60 Aligned_cols=31 Identities=13% Similarity=0.084 Sum_probs=23.3
Q ss_pred CCCCEEEEEe-CCCcEEEEECCCCceeEEecc
Q 014934 301 YDNRELASGG-NDNRLFVWNQHSTQPVLKYCE 331 (415)
Q Consensus 301 pdg~~lasg~-~dg~I~iwd~~~~~~~~~~~~ 331 (415)
|+++.|.++. .++.|.++|..+++.+..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 5677665544 578999999998888777654
No 478
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=83.36 E-value=36 Score=31.17 Aligned_cols=140 Identities=12% Similarity=0.136 Sum_probs=74.8
Q ss_pred EEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEEC-CC--cEEEEECCC----CeeeE---EecCCCccEEEEEe
Q 014934 189 VYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTS-HG--KVQIWDASR----CKRVR---TMEGHRLRVGALAW 258 (415)
Q Consensus 189 V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~-dg--~V~iwd~~~----~~~~~---~l~~h~~~V~~l~~ 258 (415)
-.+||..+++...+. ....-.+.+=.+-+||++|.+|+. +| .+++++... ..-.. .+....-.-+....
T Consensus 48 s~~yD~~tn~~rpl~-v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L 126 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLT-VQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTL 126 (243)
T ss_pred EEEEecCCCcEEecc-CCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceEC
Confidence 457899888875544 233344445567889999999875 32 478887644 11110 11111111111111
Q ss_pred -eCCEEEEEeCCCc-EEEEECCCC-CccEE--Eecc-----ccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEE
Q 014934 259 -SSSLLSSGSRDKS-ILQRDIRAQ-EDFVS--KLSG-----HKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLK 328 (415)
Q Consensus 259 -~~~~l~sgs~dg~-I~iwd~~~~-~~~~~--~~~~-----h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~ 328 (415)
+++.|+.|+.... ..+|.-+.. ..... .+.. ...----+...|+|++|+.+..+. .|||..+.+.+..
T Consensus 127 ~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n~v~~~ 204 (243)
T PF07250_consen 127 PDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTNTVVRT 204 (243)
T ss_pred CCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCCeEEee
Confidence 3678888877653 344443221 11111 1110 001111345579999999988754 5678888776666
Q ss_pred ecc
Q 014934 329 YCE 331 (415)
Q Consensus 329 ~~~ 331 (415)
+..
T Consensus 205 lP~ 207 (243)
T PF07250_consen 205 LPD 207 (243)
T ss_pred CCC
Confidence 643
No 479
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=83.08 E-value=45 Score=32.02 Aligned_cols=83 Identities=13% Similarity=0.055 Sum_probs=39.8
Q ss_pred CeEEEEECC--CCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECC-----------CcEEEEECCCCeeeEE---ecCCC
Q 014934 187 NCVYLWNAC--SSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSH-----------GKVQIWDASRCKRVRT---MEGHR 250 (415)
Q Consensus 187 ~~V~iwd~~--~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~d-----------g~V~iwd~~~~~~~~~---l~~h~ 250 (415)
..++.+|+. +.+...+..+............-++++.++|+.+ ..+..||..+.+-... .....
T Consensus 29 ~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~ 108 (346)
T TIGR03547 29 TSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGL 108 (346)
T ss_pred CeeEEEECCCCCCCceECCCCCCCCcccceEEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcc
Confidence 567788863 3344444332211111111223367777888753 2477888876542221 11111
Q ss_pred ccEEEE-EeeCCEEEEEeCC
Q 014934 251 LRVGAL-AWSSSLLSSGSRD 269 (415)
Q Consensus 251 ~~V~~l-~~~~~~l~sgs~d 269 (415)
.....+ ...+.+.+.|+.+
T Consensus 109 ~~~~~~~~~~g~IYviGG~~ 128 (346)
T TIGR03547 109 LGASGFSLHNGQAYFTGGVN 128 (346)
T ss_pred cceeEEEEeCCEEEEEcCcC
Confidence 112223 3456777777764
No 480
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=82.96 E-value=52 Score=32.60 Aligned_cols=145 Identities=10% Similarity=0.102 Sum_probs=79.5
Q ss_pred eEEEEEcCCCCeEEEEECCCcEEEEECCCC--eeeEEecCCCccEEEEEee-CCEEEEEeCCCcEEEEECCCCCc---cE
Q 014934 211 VCSVGWANRNTHLAVGTSHGKVQIWDASRC--KRVRTMEGHRLRVGALAWS-SSLLSSGSRDKSILQRDIRAQED---FV 284 (415)
Q Consensus 211 V~~v~~sp~g~~la~g~~dg~V~iwd~~~~--~~~~~l~~h~~~V~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~---~~ 284 (415)
...+..+++|.++++|..-..++-||-... +.+ . ......+..+.|. ...++..+.+|.+..-+-..... ..
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~-~-~~~~~~l~~v~~~~dg~l~l~g~~G~l~~S~d~G~~~~~~~f 318 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPH-N-RASARRIQNMGWRADGGLWLLTRGGGLYVSKGTGLTEEDFDF 318 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCCcceEEe-c-CCCccceeeeeEcCCCCEEEEeCCceEEEecCCCCcccccce
Confidence 445567788888777654433344543221 111 1 2234568888887 34455555777765533222110 11
Q ss_pred EEecc--ccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEec---cCCCcEEEEEEcCCCCcEEEEEcCCCCCe
Q 014934 285 SKLSG--HKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYC---EHTAAVKAIAWSPHLHGLLASGGGTADRC 359 (415)
Q Consensus 285 ~~~~~--h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~---~h~~~V~~l~~sp~~~~llasggg~~d~~ 359 (415)
..... -...+.++.|.+++..+++| ..|.+.... ..++.-.... .-....+.+.|.++++ .+++| .+|.
T Consensus 319 ~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~-g~~~G---~~G~ 392 (398)
T PLN00033 319 EEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKK-GFVLG---NDGV 392 (398)
T ss_pred eecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCc-eEEEe---CCcE
Confidence 22211 12358889999877765554 667666543 3444322222 2345678999987765 66666 5787
Q ss_pred EEEE
Q 014934 360 IRFW 363 (415)
Q Consensus 360 I~iw 363 (415)
|.-|
T Consensus 393 il~~ 396 (398)
T PLN00033 393 LLRY 396 (398)
T ss_pred EEEe
Confidence 7654
No 481
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=82.87 E-value=57 Score=33.47 Aligned_cols=234 Identities=15% Similarity=0.066 Sum_probs=123.3
Q ss_pred CCCcceeEeecCCCcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeE
Q 014934 165 QDDFYLNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVR 244 (415)
Q Consensus 165 ~~~~~i~~l~ws~~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~ 244 (415)
.-|..+..+-+.-++.+-+|.+..++.||..+++..++-.......|..+.-+-.| .|.+|+.+| |.+.+.+..+...
T Consensus 162 l~d~~V~aLv~D~~g~lWvgT~dGL~~fd~~~gkalql~s~~~dk~I~al~~d~qg-~LWVGTdqG-v~~~e~~G~~~sn 239 (671)
T COG3292 162 LKDTPVVALVFDANGRLWVGTPDGLSYFDAGRGKALQLASPPLDKAINALIADVQG-RLWVGTDQG-VYLQEAEGWRASN 239 (671)
T ss_pred ccCccceeeeeeccCcEEEecCCcceEEccccceEEEcCCCcchhhHHHHHHHhcC-cEEEEeccc-eEEEchhhccccc
Confidence 34556777777777788888888999999999998887754444566666655555 477888887 7777766532221
Q ss_pred Eec-CCCccEEEEEee-CCEEEEEeCCCcEEEEECCCCCccEEEeccc--cCCeEEEEEeCCCCEEEEEeCCCcEEEEEC
Q 014934 245 TME-GHRLRVGALAWS-SSLLSSGSRDKSILQRDIRAQEDFVSKLSGH--KSEVCGLKWSYDNRELASGGNDNRLFVWNQ 320 (415)
Q Consensus 245 ~l~-~h~~~V~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h--~~~V~~l~~spdg~~lasg~~dg~I~iwd~ 320 (415)
... -..+.|..+.-+ ...+..|+..|..+.--.+.+-. ....+.| -..|.++....+|. |-+++.++.+++-+.
T Consensus 240 ~~~~lp~~~I~ll~qD~qG~lWiGTenGl~r~~l~rq~Lq-~~~~~~~l~~S~vnsL~~D~dGs-LWv~t~~giv~~~~a 317 (671)
T COG3292 240 WGPMLPSGNILLLVQDAQGELWIGTENGLWRTRLPRQGLQ-IPLSKMHLGVSTVNSLWLDTDGS-LWVGTYGGIVRYLTA 317 (671)
T ss_pred cCCCCcchheeeeecccCCCEEEeecccceeEecCCCCcc-ccccccCCccccccceeeccCCC-EeeeccCceEEEecc
Confidence 111 123455555554 46778888877554433332221 1111111 23466676666665 456666666655332
Q ss_pred CCCceeEEeccCCCcE-EEEEEcC--CCCcEEEEEcCCCCCeEEEEECCCCcEEEEee--CCCCEEEEEECCCCCeEEEE
Q 014934 321 HSTQPVLKYCEHTAAV-KAIAWSP--HLHGLLASGGGTADRCIRFWNTTTNTHLSCMD--TGSQVCNLVWSKNVNELVST 395 (415)
Q Consensus 321 ~~~~~~~~~~~h~~~V-~~l~~sp--~~~~llasggg~~d~~I~iwd~~t~~~~~~~~--~~~~V~~l~~s~~~~~l~s~ 395 (415)
. ......+....+.+ ..++-.| ....+.... .-+.+.+-+-.+|..+..+. -+..|+.+.+..++..-+.
T Consensus 318 ~-w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~n---s~g~L~van~stG~~v~sv~q~Rg~nit~~~~d~~g~lWlg- 392 (671)
T COG3292 318 D-WKRMAVINDSDGGVSQYEAVAPALLSWGVRQLN---SIGELMVANGSTGELVRSVHQLRGMNITTTLEDSRGRLWLG- 392 (671)
T ss_pred h-hhheeeeecCCCchhhhhccCchhcccceeecc---ccceEEEecCCCCcEEEEeeeccccccchhhhccCCcEEEE-
Confidence 2 11111122211111 1112222 111111111 23345555556666665543 2455666677766655443
Q ss_pred EecCCCcEEEEECC
Q 014934 396 HGYSQNQIIVWRYP 409 (415)
Q Consensus 396 ~g~~dg~I~vw~~~ 409 (415)
+.++-+..|+-.
T Consensus 393 --s~q~GLsrl~n~ 404 (671)
T COG3292 393 --SMQNGLSRLDNK 404 (671)
T ss_pred --ecccchhhhccC
Confidence 334344444433
No 482
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=82.71 E-value=54 Score=32.61 Aligned_cols=32 Identities=16% Similarity=0.236 Sum_probs=25.7
Q ss_pred CCeEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Q 014934 292 SEVCGLKWSYDNRELASGGNDNRLFVWNQHST 323 (415)
Q Consensus 292 ~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~ 323 (415)
..|..++..+..+.|++...+|.|.+|++..+
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~~ 221 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGPG 221 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-SS
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeCC
Confidence 34999999998899999999999999999753
No 483
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=82.29 E-value=52 Score=32.16 Aligned_cols=83 Identities=12% Similarity=0.018 Sum_probs=39.5
Q ss_pred CeEEEEECCC--CCeEEeEecCCCCCeEEEEEcCCCCeEEEEECC-----------CcEEEEECCCCeeeE--EecCCC-
Q 014934 187 NCVYLWNACS--SKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSH-----------GKVQIWDASRCKRVR--TMEGHR- 250 (415)
Q Consensus 187 ~~V~iwd~~~--~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~d-----------g~V~iwd~~~~~~~~--~l~~h~- 250 (415)
..++++|... ++...+..+............-++.+.+.|+.. ..+..||..+.+-.. ......
T Consensus 50 ~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~ 129 (376)
T PRK14131 50 TSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGL 129 (376)
T ss_pred CeEEEEECCCCCCCeEECCcCCCCCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcc
Confidence 5678888764 344433332211111111223357777777653 247788887654222 111111
Q ss_pred ccEEEEE-eeCCEEEEEeCC
Q 014934 251 LRVGALA-WSSSLLSSGSRD 269 (415)
Q Consensus 251 ~~V~~l~-~~~~~l~sgs~d 269 (415)
....+++ .++.+.+.|+.+
T Consensus 130 ~~~~~~~~~~~~IYv~GG~~ 149 (376)
T PRK14131 130 AGHVAVSLHNGKAYITGGVN 149 (376)
T ss_pred cceEEEEeeCCEEEEECCCC
Confidence 1122233 346777777754
No 484
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=82.25 E-value=14 Score=38.19 Aligned_cols=38 Identities=16% Similarity=0.267 Sum_probs=29.0
Q ss_pred CCeEEEEEcC----CCCeEEEEECCCcEEEEECCCCeeeEEe
Q 014934 209 DSVCSVGWAN----RNTHLAVGTSHGKVQIWDASRCKRVRTM 246 (415)
Q Consensus 209 ~~V~~v~~sp----~g~~la~g~~dg~V~iwd~~~~~~~~~l 246 (415)
..+.+++++. +..+|++-+.|+.+++||+.+++++.+.
T Consensus 215 ~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 215 SVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp --EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred CccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence 3456677766 6789999999999999999999986655
No 485
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=81.63 E-value=6.7 Score=24.17 Aligned_cols=34 Identities=12% Similarity=0.245 Sum_probs=23.1
Q ss_pred EeccCCCcEEEEEEcCCCCcEEEEEcCCCC--CeEEEE
Q 014934 328 KYCEHTAAVKAIAWSPHLHGLLASGGGTAD--RCIRFW 363 (415)
Q Consensus 328 ~~~~h~~~V~~l~~sp~~~~llasggg~~d--~~I~iw 363 (415)
++....+.-...+|+|+|+.++.++. .+ |.-.||
T Consensus 3 ~~t~~~~~~~~p~~SpDGk~i~f~s~--~~~~g~~diy 38 (39)
T PF07676_consen 3 QLTNSPGDDGSPAWSPDGKYIYFTSN--RNDRGSFDIY 38 (39)
T ss_dssp EES-SSSSEEEEEE-TTSSEEEEEEE--CT--SSEEEE
T ss_pred CcccCCccccCEEEecCCCEEEEEec--CCCCCCcCEE
Confidence 34445567788999999998888876 55 655555
No 486
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=80.92 E-value=89 Score=33.94 Aligned_cols=155 Identities=12% Similarity=0.143 Sum_probs=95.2
Q ss_pred CCCCCeEEEEEc---C----CCCeEEEEECCCcEEEEECCCC---------------eeeEEecC---CCccEEEEEeeC
Q 014934 206 GIDDSVCSVGWA---N----RNTHLAVGTSHGKVQIWDASRC---------------KRVRTMEG---HRLRVGALAWSS 260 (415)
Q Consensus 206 ~~~~~V~~v~~s---p----~g~~la~g~~dg~V~iwd~~~~---------------~~~~~l~~---h~~~V~~l~~~~ 260 (415)
....+|..|+|. . ..++|++=. ...+.|+...-. ..+..+.. ...+..+++|+|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt-~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP 155 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRT-ETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP 155 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEc-CCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence 446788899988 2 224666654 445777762111 22333331 234677888884
Q ss_pred ---CEEEEEeCCCcEEEEECCCCC----ccEEEeccccC----------CeEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Q 014934 261 ---SLLSSGSRDKSILQRDIRAQE----DFVSKLSGHKS----------EVCGLKWSYDNRELASGGNDNRLFVWNQHST 323 (415)
Q Consensus 261 ---~~l~sgs~dg~I~iwd~~~~~----~~~~~~~~h~~----------~V~~l~~spdg~~lasg~~dg~I~iwd~~~~ 323 (415)
..|+.....|...|||+.... ........+.+ .-..+.|.++.+.|++++. ..+.++|+.+.
T Consensus 156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-~~l~~~d~~~~ 234 (765)
T PF10214_consen 156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-SKLMLIDFESN 234 (765)
T ss_pred CccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-CceEEEECCCC
Confidence 689999999999999992111 11111111122 2347889888888888765 45889999877
Q ss_pred ceeE--EeccCCCcEEEEEEcCC--CCcEEEEEcCCCCCeEEEEECCC
Q 014934 324 QPVL--KYCEHTAAVKAIAWSPH--LHGLLASGGGTADRCIRFWNTTT 367 (415)
Q Consensus 324 ~~~~--~~~~h~~~V~~l~~sp~--~~~llasggg~~d~~I~iwd~~t 367 (415)
.... ........|..+.-+|. +..++.| ...|...++..
T Consensus 235 ~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT-----s~eiiw~~~~~ 277 (765)
T PF10214_consen 235 WQTEYLVTAKTWSWILDVKRSPDNPSHVFILT-----SKEIIWLDVKS 277 (765)
T ss_pred CccchhccCCChhheeeEEecCCccceEEEEe-----cCeEEEEEccC
Confidence 5422 22234567888888888 3333332 46787888776
No 487
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=80.91 E-value=32 Score=33.35 Aligned_cols=60 Identities=12% Similarity=0.043 Sum_probs=39.9
Q ss_pred cEEEEEcCCCCCeEEEEECCCCcEEEEeeCCCCEEEEEECCCCCeEEEEEecCCCcEEEE
Q 014934 347 GLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVW 406 (415)
Q Consensus 347 ~llasggg~~d~~I~iwd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw 406 (415)
.+++...|..+|.+.-||..+......++.-....+++.|+++.+++.+........+.|
T Consensus 188 ~~~a~l~g~~~GRl~~YD~~tK~~~VLld~L~F~NGlaLS~d~sfvl~~Et~~~ri~ryw 247 (376)
T KOG1520|consen 188 FVFAALEGDPTGRLFRYDPSTKVTKVLLDGLYFPNGLALSPDGSFVLVAETTTARIKRYW 247 (376)
T ss_pred eEEeeecCCCccceEEecCcccchhhhhhcccccccccCCCCCCEEEEEeeccceeeeeE
Confidence 355555555778888888777654444445566788999999999998754333344455
No 488
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=80.90 E-value=65 Score=32.48 Aligned_cols=108 Identities=13% Similarity=0.135 Sum_probs=62.8
Q ss_pred ccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCce--eEEec-----cCCCcEEEEEEcCCC------CcEEEEEcCC-
Q 014934 290 HKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQP--VLKYC-----EHTAAVKAIAWSPHL------HGLLASGGGT- 355 (415)
Q Consensus 290 h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~--~~~~~-----~h~~~V~~l~~sp~~------~~llasggg~- 355 (415)
.-...+.|+|.|||++|++--..|+|++++..++.. +..+. .-......|+++|+- .+++++-+..
T Consensus 28 GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~ 107 (454)
T TIGR03606 28 GLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKN 107 (454)
T ss_pred CCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccC
Confidence 345678899999998887766579999998655432 22111 135678999999874 3466653200
Q ss_pred ------CCCeEEEEECCCC-------cEE-EEee--CCCCEEEEEECCCCCeEEEEEec
Q 014934 356 ------ADRCIRFWNTTTN-------THL-SCMD--TGSQVCNLVWSKNVNELVSTHGY 398 (415)
Q Consensus 356 ------~d~~I~iwd~~t~-------~~~-~~~~--~~~~V~~l~~s~~~~~l~s~~g~ 398 (415)
....|.-|.+... +.+ ..+. ....-..|.|.|||..++++ |.
T Consensus 108 ~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~-GD 165 (454)
T TIGR03606 108 GDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTI-GE 165 (454)
T ss_pred CCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEE-CC
Confidence 1234444544311 111 1111 11234568899999866654 54
No 489
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=80.58 E-value=51 Score=34.94 Aligned_cols=245 Identities=13% Similarity=0.131 Sum_probs=0.0
Q ss_pred CCCCCCCcceeEeecCC--CcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEE---
Q 014934 161 APALQDDFYLNLVDWSS--HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIW--- 235 (415)
Q Consensus 161 ~~~l~~~~~i~~l~ws~--~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iw--- 235 (415)
....+.+..++.+.-+| ..++.+..|++|.+|+.......+++ ....+-..+.|...| |++.+.|..+.-|
T Consensus 8 s~~~k~~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~--~~~~p~~nlv~tnhg--l~~~tsdrr~la~~~d 83 (1636)
T KOG3616|consen 8 SRDPKEDEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKIC--EEAKPKENLVFTNHG--LVTATSDRRALAWKED 83 (1636)
T ss_pred cCCccccceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhh--hhcCCccceeeeccc--eEEEeccchhheeecc
Q ss_pred ------------------------------------------------------------------ECCCCeeeEEecCC
Q 014934 236 ------------------------------------------------------------------DASRCKRVRTMEGH 249 (415)
Q Consensus 236 ------------------------------------------------------------------d~~~~~~~~~l~~h 249 (415)
|+.++.........
T Consensus 84 gvvqqqfdyndqsekefss~~cdptaqnvvgtlcggv~q~dcclrr~i~knkfe~tyv~pshvilkdlsn~trt~l~s~~ 163 (1636)
T KOG3616|consen 84 GVVQQQFDYNDQSEKEFSSILCDPTAQNVVGTLCGGVEQFDCCLRRGILKNKFELTYVAPSHVILKDLSNDTRTNLISHK 163 (1636)
T ss_pred CcchhhccccchhhhhccceecCchhhhhhhhhccceeeehHHHHhHHHhccceeEEeccceeeeecccCCceEeeeecC
Q ss_pred CccEEEEEeeC-CEEEEEeCCCcEEEEECCCCCccEEEeccccC--------CeEEEEEeCCCCEEEEEeCCCcE-----
Q 014934 250 RLRVGALAWSS-SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKS--------EVCGLKWSYDNRELASGGNDNRL----- 315 (415)
Q Consensus 250 ~~~V~~l~~~~-~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~--------~V~~l~~spdg~~lasg~~dg~I----- 315 (415)
.-.|-.+..-+ +..+.+-...+|.+-|+.+..-....+++..+ +-||+-|+...-.++-=++|+.+
T Consensus 164 g~aidelkilgkdryli~~ts~siii~d~es~rfsei~wqgsgg~ekfffd~~n~cli~nageltlveyg~d~slg~vrt 243 (1636)
T KOG3616|consen 164 GLAIDELKILGKDRYLIAHTSESIIIADLESNRFSEIAWQGSGGHEKFFFDFENCCLIFNAGELTLVEYGNDDSLGSVRT 243 (1636)
T ss_pred CcchhhhhhccccceEEeeccccEEEeecccchhhhhhcccCCCcceeeeecCcEEEEEecCeeEEEEecCCCcchhhhh
Q ss_pred ---------------------------------EEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEE
Q 014934 316 ---------------------------------FVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRF 362 (415)
Q Consensus 316 ---------------------------------~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~i 362 (415)
..-|+++|+...--.--+..-.++-|--..+--+.-.- .=..|.|
T Consensus 244 e~~nphlisvqike~~qksygrnfdse~n~~~a~~~di~tgqicvfsdflqrrtssvffiikakakifndl--qlphi~i 321 (1636)
T KOG3616|consen 244 EFMNPHLISVQIKEACQKSYGRNFDSEDNKKLAEHIDIKTGQICVFSDFLQRRTSSVFFIIKAKAKIFNDL--QLPHIAI 321 (1636)
T ss_pred hhcCceeeehHHHHHHHHhhCCCCCcchhhhHHHHhccccCceeeehhhhhhccccceeeehhhhhhcccc--cCcceee
Q ss_pred -EECCCCcEEEEeeCCCCEEEEEECCCCCeEEEEEecCCCcEEEEECCCCcc
Q 014934 363 -WNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSK 413 (415)
Q Consensus 363 -wd~~t~~~~~~~~~~~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s~~~ 413 (415)
.|+-.|+....+.|.+.|--+..+..+..|+. -...-.+.++|+.+.++
T Consensus 322 pvdli~g~~~~~inh~~~vdwielne~~~kllf--rdkk~kl~l~di~s~qk 371 (1636)
T KOG3616|consen 322 PVDLIGGQNEGFINHEGAVDWIELNERAHKLLF--RDKKLKLHLVDIESCQK 371 (1636)
T ss_pred eeecccCcccccccccccccceeccchhhhhhc--ccccceeEEEEcccchH
No 490
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=80.25 E-value=83 Score=33.19 Aligned_cols=161 Identities=16% Similarity=0.174 Sum_probs=89.5
Q ss_pred CCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCe--eeEEec-CCCc------cEEEEEee--CCEEEEEeC-CC---c
Q 014934 207 IDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCK--RVRTME-GHRL------RVGALAWS--SSLLSSGSR-DK---S 271 (415)
Q Consensus 207 ~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~--~~~~l~-~h~~------~V~~l~~~--~~~l~sgs~-dg---~ 271 (415)
-.+.|-+|.+..+++.+++...+|.|++||...+. .+..+. .+.. -|...... .+++++.+. ++ .
T Consensus 128 l~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~ 207 (670)
T PF10395_consen 128 LDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLS 207 (670)
T ss_pred cccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEE
Confidence 35789999999999999999999999999993321 111221 1111 12222211 245554444 32 3
Q ss_pred EEEEECCCCCccEEEec-----cccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeEEeccC-----C-CcEEEEE
Q 014934 272 ILQRDIRAQEDFVSKLS-----GHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEH-----T-AAVKAIA 340 (415)
Q Consensus 272 I~iwd~~~~~~~~~~~~-----~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~~~~~~~h-----~-~~V~~l~ 340 (415)
.+++.+.........+. .+...=+.+++. +|.+..- .+++|.+|++.+.+...++.-. . ..+.++.
T Consensus 208 ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~-~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~ 284 (670)
T PF10395_consen 208 YKLISLSNESSSIFELSSTILENFGLEDSKFCYQ-FGKLYQL--SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLK 284 (670)
T ss_pred EEEEEeccCCcceEEeehheeccCCcccceEEEe-CCEEEEE--eCCEEEEEEcCCceEEEEEEechhhccccccceEee
Confidence 56666622221222222 122222334444 5655444 6789999999887666555321 1 1233332
Q ss_pred EcCCCCcEEEEEcCCCCCeEEEEECCCCcEEEEee
Q 014934 341 WSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD 375 (415)
Q Consensus 341 ~sp~~~~llasggg~~d~~I~iwd~~t~~~~~~~~ 375 (415)
.|....+|.+. +..|++.|+.-...+.+++
T Consensus 285 -~~s~nRvLLs~----~nkIyLld~~~~siLse~~ 314 (670)
T PF10395_consen 285 -PPSPNRVLLSV----NNKIYLLDLKFESILSEFE 314 (670)
T ss_pred -cCCCCeEEEEc----CCEEEEEeehhhhhhhhhh
Confidence 23333466654 6899999998666665554
No 491
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=79.57 E-value=33 Score=38.50 Aligned_cols=149 Identities=10% Similarity=0.118 Sum_probs=90.1
Q ss_pred EEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEecCCCccEEEEEee---C-------CEEEEEeCCCcEEEEECCCCC
Q 014934 212 CSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWS---S-------SLLSSGSRDKSILQRDIRAQE 281 (415)
Q Consensus 212 ~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~~h~~~V~~l~~~---~-------~~l~sgs~dg~I~iwd~~~~~ 281 (415)
+.+-+-|.=.+... +.|..+.+|+.+++.....+.+-...|..+..- + .+++.-+.--.|.++-+.-.+
T Consensus 82 ~~mGiFpeI~RaWi-TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~ 160 (1311)
T KOG1900|consen 82 TDMGIFPEIGRAWI-TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDE 160 (1311)
T ss_pred eeeccchhhcceEE-EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEecc
Confidence 34444454333333 568889999999988888888777777777653 2 234444444556665443211
Q ss_pred --ccEEEe------ccccCCeEEEEEeCCCCEEEEEeCCCcEEEEEC----CCC---c-----------------eeEEe
Q 014934 282 --DFVSKL------SGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQ----HST---Q-----------------PVLKY 329 (415)
Q Consensus 282 --~~~~~~------~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~----~~~---~-----------------~~~~~ 329 (415)
.....+ ......|.++....+|+.|.+|-.+ .||.+ .++ + .+.++
T Consensus 161 ~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G~dg---~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~ 237 (1311)
T KOG1900|consen 161 FTGELSIFNTSFKISVDGVSVNCITYTENGRIFFAGRDG---NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSV 237 (1311)
T ss_pred ccCcccccccceeeecCCceEEEEEeccCCcEEEeecCC---CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcC
Confidence 011111 1224568888877888888776554 44443 111 0 01223
Q ss_pred c-cCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCC
Q 014934 330 C-EHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTT 367 (415)
Q Consensus 330 ~-~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t 367 (415)
. .+..+|..++...... ++.+-+ +.++|.+||+..
T Consensus 238 ~~~~~dpI~qi~ID~SR~-IlY~ls--ek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 238 PGSSKDPIRQITIDNSRN-ILYVLS--EKGTVSAYDIGG 273 (1311)
T ss_pred CCCCCCcceeeEeccccc-eeeeec--cCceEEEEEccC
Confidence 3 5677899999886654 666655 799999999976
No 492
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=79.26 E-value=69 Score=31.68 Aligned_cols=176 Identities=14% Similarity=0.121 Sum_probs=95.8
Q ss_pred CeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCe---eeEEec--CCCccEEEEEeeCC
Q 014934 187 NCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCK---RVRTME--GHRLRVGALAWSSS 261 (415)
Q Consensus 187 ~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~---~~~~l~--~h~~~V~~l~~~~~ 261 (415)
+.|||.|-.-.-+-++.-++....|.++.|..|--++++--...-+.+.|+.+.+ .+..++ |.+....-+. .+.
T Consensus 406 N~vYilDe~lnvvGkltGl~~gERIYAvRf~gdv~yiVTfrqtDPlfviDlsNPenPkvlGeLKIPGfS~YLHpig-en~ 484 (603)
T COG4880 406 NAVYILDENLNVVGKLTGLAPGERIYAVRFVGDVLYIVTFRQTDPLFVIDLSNPENPKVLGELKIPGFSEYLHPIG-ENR 484 (603)
T ss_pred ceeEEEcCCCcEEEEEeccCCCceEEEEEEeCceEEEEEEeccCceEEEEcCCCCCCceeEEEecCCchhhccccC-CCc
Confidence 4688888654444444445667899999998887788877666678888987643 444333 2221111110 135
Q ss_pred EEEEEeCCCcE--EEEECCCCCccEE----EeccccC----CeEEEEEeCCCCEEE-EEeCCCcEEEEECCCCceeEEec
Q 014934 262 LLSSGSRDKSI--LQRDIRAQEDFVS----KLSGHKS----EVCGLKWSYDNRELA-SGGNDNRLFVWNQHSTQPVLKYC 330 (415)
Q Consensus 262 ~l~sgs~dg~I--~iwd~~~~~~~~~----~~~~h~~----~V~~l~~spdg~~la-sg~~dg~I~iwd~~~~~~~~~~~ 330 (415)
+|-.|..+|.+ .++|+.....+.. ++...-. .-.+..|.|....+. -+...|. |+-++.+..+.+-.
T Consensus 485 ~lGvG~~~g~vKiSLFdiSdl~~PkEv~~y~l~~~wspvf~dhHAFl~d~~~~ifFlPay~~gy--if~iedg~kl~k~~ 562 (603)
T COG4880 485 LLGVGAYQGGVKISLFDISDLAAPKEVSNYTLSNAWSPVFYDHHAFLYDPEAEIFFLPAYLGGY--IFFIEDGSKLRKRA 562 (603)
T ss_pred EEEeecccCCceEEEEeccCCCCchhhhheehhhhcchhhhccceeecCCcccEEEecccCccE--EEEEecCceeeehh
Confidence 66677777764 5677765432111 1110001 112345555555443 3555554 55566665555544
Q ss_pred cCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCCCcEE
Q 014934 331 EHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHL 371 (415)
Q Consensus 331 ~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t~~~~ 371 (415)
.|...+...-|-.+ ++...|+ ..+.+.|-.+.+.+
T Consensus 563 e~k~na~RA~fi~d--ylY~vg~----~ev~~ldenswe~V 597 (603)
T COG4880 563 ERKLNADRAFFIKD--YLYLVGG----NEVWKLDENSWEVV 597 (603)
T ss_pred hhcccceeeEEecc--eEEEecc----ceeEEeccchHhhh
Confidence 66665555555544 4666553 45666665554433
No 493
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=79.24 E-value=61 Score=31.04 Aligned_cols=143 Identities=14% Similarity=0.107 Sum_probs=85.2
Q ss_pred ccEEEEEee--CCEEEEEeCCCc------EEEEECCCCC---ccE-----EEecccc--------CCeEEEEEeCCCCEE
Q 014934 251 LRVGALAWS--SSLLSSGSRDKS------ILQRDIRAQE---DFV-----SKLSGHK--------SEVCGLKWSYDNREL 306 (415)
Q Consensus 251 ~~V~~l~~~--~~~l~sgs~dg~------I~iwd~~~~~---~~~-----~~~~~h~--------~~V~~l~~spdg~~l 306 (415)
+.+..|.+. +..+++.+.+|. ++..++.... ..+ ..+..-. ....+|++.++|.++
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~ 99 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFW 99 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEE
Confidence 445666665 456666677776 6555554311 001 1111111 134578887888888
Q ss_pred EEEeCC------CcEEEEECCCCceeEEec---------------cCCCcEEEEEEcCCCCcEEEEEcCC--CCC-----
Q 014934 307 ASGGND------NRLFVWNQHSTQPVLKYC---------------EHTAAVKAIAWSPHLHGLLASGGGT--ADR----- 358 (415)
Q Consensus 307 asg~~d------g~I~iwd~~~~~~~~~~~---------------~h~~~V~~l~~sp~~~~llasggg~--~d~----- 358 (415)
++.-.+ ..|..++.. ++.+..+. ..+...-+++++|+|+.|++..-.. .|+
T Consensus 100 is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~ 178 (326)
T PF13449_consen 100 ISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRANP 178 (326)
T ss_pred EEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccccc
Confidence 887677 789999876 55544331 2345678999999998676665321 122
Q ss_pred ------eEEEEECCC-CcE----EEEee------CCCCEEEEEECCCCCeEEE
Q 014934 359 ------CIRFWNTTT-NTH----LSCMD------TGSQVCNLVWSKNVNELVS 394 (415)
Q Consensus 359 ------~I~iwd~~t-~~~----~~~~~------~~~~V~~l~~s~~~~~l~s 394 (415)
.|..||..+ ++. ...++ ....|..+.+-++++.|+.
T Consensus 179 ~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 179 DNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred ccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 244455554 322 22223 3467889999999998876
No 494
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=79.21 E-value=80 Score=32.46 Aligned_cols=226 Identities=13% Similarity=0.014 Sum_probs=112.7
Q ss_pred cceeEeecCCCcEEEEEcCCeEEEEECCCCCeEEeEecCCCCCeEEEEEcCCCCeEEEEECCCcEEEEECCCCeeeEEec
Q 014934 168 FYLNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTME 247 (415)
Q Consensus 168 ~~i~~l~ws~~~~la~~~d~~V~iwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~~~~~l~ 247 (415)
..|+.+.-+-+.-|-+|.+..|++.+..+.+.......-..+.|..+.-..+| .+.+|+..|..+.---+.+-.+...+
T Consensus 206 k~I~al~~d~qg~LWVGTdqGv~~~e~~G~~~sn~~~~lp~~~I~ll~qD~qG-~lWiGTenGl~r~~l~rq~Lq~~~~~ 284 (671)
T COG3292 206 KAINALIADVQGRLWVGTDQGVYLQEAEGWRASNWGPMLPSGNILLLVQDAQG-ELWIGTENGLWRTRLPRQGLQIPLSK 284 (671)
T ss_pred hhHHHHHHHhcCcEEEEeccceEEEchhhccccccCCCCcchheeeeecccCC-CEEEeecccceeEecCCCCccccccc
Confidence 34444444445667888899999998877444433332234556655544444 46778888855443322222222222
Q ss_pred CC--CccEEEEEee-CCEEEEEeCCCcEEEEECCCCCccEEEeccccC-CeEEEEEeC--CCCEEEEEeCCCcEEEEECC
Q 014934 248 GH--RLRVGALAWS-SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKS-EVCGLKWSY--DNRELASGGNDNRLFVWNQH 321 (415)
Q Consensus 248 ~h--~~~V~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~-~V~~l~~sp--dg~~lasg~~dg~I~iwd~~ 321 (415)
.| ...|.++.-+ ..-|.+++.+|.+.+-+-.-.. ...+....+ .+...+..| .+..+--...-|.+.+-+-.
T Consensus 285 ~~l~~S~vnsL~~D~dGsLWv~t~~giv~~~~a~w~~--ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~s 362 (671)
T COG3292 285 MHLGVSTVNSLWLDTDGSLWVGTYGGIVRYLTADWKR--MAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGS 362 (671)
T ss_pred cCCccccccceeeccCCCEeeeccCceEEEecchhhh--eeeeecCCCchhhhhccCchhcccceeeccccceEEEecCC
Confidence 22 2345555444 4567788777766654432111 111111111 111111111 11122222222334444444
Q ss_pred CCceeEEec-cCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCC-CcEEEEee--CCCCEEEEEECCCCCeEEEEEe
Q 014934 322 STQPVLKYC-EHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTT-NTHLSCMD--TGSQVCNLVWSKNVNELVSTHG 397 (415)
Q Consensus 322 ~~~~~~~~~-~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t-~~~~~~~~--~~~~V~~l~~s~~~~~l~s~~g 397 (415)
++..+.... .-...|+.+++...+. +-+.. ...-+..|+..+ +..+.... ..+.|+.+.=.|+++ |.. |
T Consensus 363 tG~~v~sv~q~Rg~nit~~~~d~~g~-lWlgs---~q~GLsrl~n~n~~avlde~agl~ss~V~aived~dns-LWI--G 435 (671)
T COG3292 363 TGELVRSVHQLRGMNITTTLEDSRGR-LWLGS---MQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPDNS-LWI--G 435 (671)
T ss_pred CCcEEEEeeeccccccchhhhccCCc-EEEEe---cccchhhhccCCcccccccccCCcccceeeeeecCCCC-EEE--e
Confidence 554443321 1224466666666554 43322 444466666666 44444443 357899999999998 444 5
Q ss_pred cCCCcE
Q 014934 398 YSQNQI 403 (415)
Q Consensus 398 ~~dg~I 403 (415)
.++|.+
T Consensus 436 Ts~Glv 441 (671)
T COG3292 436 TSGGLV 441 (671)
T ss_pred ccCCeE
Confidence 566543
No 495
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=79.10 E-value=95 Score=33.32 Aligned_cols=90 Identities=13% Similarity=0.279 Sum_probs=52.4
Q ss_pred EEEEeCCCCEEEEEeCCC-----cEEEEECC---CCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEEECCC
Q 014934 296 GLKWSYDNRELASGGNDN-----RLFVWNQH---STQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTT 367 (415)
Q Consensus 296 ~l~~spdg~~lasg~~dg-----~I~iwd~~---~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iwd~~t 367 (415)
.+.|-|+|..+|+-+.|| .|..+.-+ -|..-... +....+..++|.-... +++.. ..+.|++|-..+
T Consensus 251 ~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~-~~dEk~~~~~wn~~s~-vlav~---~~n~~~lwttkN 325 (1243)
T COG5290 251 QLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRV-GCDEKAFLENWNLLST-VLAVA---EGNLLKLWTTKN 325 (1243)
T ss_pred ccccccCCceeeeeccCCCCCcceEEEEccCCcccCCccccC-CchhhhhhhhhhHHHH-HHHHh---hcceEEEEEccc
Confidence 489999999999977555 24444422 22221222 3344566778876654 44444 468899998776
Q ss_pred CcEEEEee-CCCCEEEEEECCCCC
Q 014934 368 NTHLSCMD-TGSQVCNLVWSKNVN 390 (415)
Q Consensus 368 ~~~~~~~~-~~~~V~~l~~s~~~~ 390 (415)
-...-... .-.++.-+.|+|...
T Consensus 326 yhWYLK~e~~ip~~s~vkwhpe~~ 349 (1243)
T COG5290 326 YHWYLKVERQIPGISYVKWHPEEK 349 (1243)
T ss_pred eEEEEEEeecCCCcceeeeccccC
Confidence 54322222 234455577877543
No 496
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=78.63 E-value=66 Score=32.45 Aligned_cols=104 Identities=14% Similarity=0.145 Sum_probs=59.1
Q ss_pred CCeEEEEEcCCCCeEEEEECCCcEEEEECCCCe--eeEEec-----CCCccEEEEEeeCCE--------EEEEe------
Q 014934 209 DSVCSVGWANRNTHLAVGTSHGKVQIWDASRCK--RVRTME-----GHRLRVGALAWSSSL--------LSSGS------ 267 (415)
Q Consensus 209 ~~V~~v~~sp~g~~la~g~~dg~V~iwd~~~~~--~~~~l~-----~h~~~V~~l~~~~~~--------l~sgs------ 267 (415)
.....|+|.|||++|++--..|.|++++..++. .+..+. ........|+++|++ |....
T Consensus 30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~~ 109 (454)
T TIGR03606 30 NKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNGD 109 (454)
T ss_pred CCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCCC
Confidence 567899999999877765446999999865443 222121 135668889998664 33332
Q ss_pred ----CCCcEEEEECCCCC----ccEEEeccc----cCCeEEEEEeCCCCEEEEEeCC
Q 014934 268 ----RDKSILQRDIRAQE----DFVSKLSGH----KSEVCGLKWSYDNRELASGGND 312 (415)
Q Consensus 268 ----~dg~I~iwd~~~~~----~~~~~~~~h----~~~V~~l~~spdg~~lasg~~d 312 (415)
....|.-|.+.... .....+... ...-..|.|.|||.++++.+..
T Consensus 110 ~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 110 KELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred CCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence 12345555543211 011122111 1124568899999887765443
No 497
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=77.82 E-value=40 Score=33.50 Aligned_cols=31 Identities=16% Similarity=0.228 Sum_probs=21.2
Q ss_pred CCEEEEEECCCCCeEEEEEecCCCcEEEEECCC
Q 014934 378 SQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPT 410 (415)
Q Consensus 378 ~~V~~l~~s~~~~~l~s~~g~~dg~I~vw~~~s 410 (415)
..|..+...+..+.|++ -..++.|.+|++..
T Consensus 190 ~~I~~v~~d~~r~~ly~--l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYT--LTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEE--EESSE-EEEEEE-S
T ss_pred hceeeEEecCCcCEEEE--EeCCCcEEEEEEeC
Confidence 34778888887788877 45788899999863
No 498
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=77.20 E-value=23 Score=26.88 Aligned_cols=53 Identities=21% Similarity=0.366 Sum_probs=33.7
Q ss_pred EeCCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCcEEEEEcCCCCCeEEEE
Q 014934 309 GGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFW 363 (415)
Q Consensus 309 g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggg~~d~~I~iw 363 (415)
+..+|++..||..+++...-+.+ -...+.|++++++..++++=.+ .-+..|.|
T Consensus 33 ~~~~GRll~ydp~t~~~~vl~~~-L~fpNGVals~d~~~vlv~Et~-~~Ri~ryw 85 (89)
T PF03088_consen 33 GRPTGRLLRYDPSTKETTVLLDG-LYFPNGVALSPDESFVLVAETG-RYRILRYW 85 (89)
T ss_dssp T---EEEEEEETTTTEEEEEEEE-ESSEEEEEE-TTSSEEEEEEGG-GTEEEEEE
T ss_pred CCCCcCEEEEECCCCeEEEehhC-CCccCeEEEcCCCCEEEEEecc-CceEEEEE
Confidence 44568899999998865444433 3467899999999988777541 34444555
No 499
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]
Probab=77.03 E-value=43 Score=33.01 Aligned_cols=119 Identities=13% Similarity=0.222 Sum_probs=64.9
Q ss_pred EcCCeEEEEECCCCCeEEeEecC---CCCCeEEEEEcCCCCeEEEE-------ECCCcEEEEECCCCeeeEEecCCCccE
Q 014934 184 GLGNCVYLWNACSSKVTKLCDLG---IDDSVCSVGWANRNTHLAVG-------TSHGKVQIWDASRCKRVRTMEGHRLRV 253 (415)
Q Consensus 184 ~~d~~V~iwd~~~~~~~~~~~~~---~~~~V~~v~~sp~g~~la~g-------~~dg~V~iwd~~~~~~~~~l~~h~~~V 253 (415)
...+.|-+|+..+++........ ......-+.|.+...+++.. ..++.|++||.+...
T Consensus 242 s~~~~Igvw~~~t~q~~d~~~~s~~dsag~~~kL~w~ng~~~li~~~~fp~~~kdN~~i~~~d~Rd~n------------ 309 (465)
T KOG2714|consen 242 SSVGKIGVWHAVTQQAQDVQPISSYDSAGSFLKLGWLNGSNLLIDSQKFPLRMKDNDLIVTEDFRDRN------------ 309 (465)
T ss_pred cccccccccchhhhceeeeeeccCccccCChhhhccccCceeEEEEeeccccccCCceEEEeeccCCC------------
Confidence 34467889998888554444332 12334455666544444332 235668888876544
Q ss_pred EEEEeeCCEEEEEeCCCcEEEEECCCCC-----ccEEEeccccCCeEEEEEeCCCCEEEEEeCCCcEEEEECCCCce
Q 014934 254 GALAWSSSLLSSGSRDKSILQRDIRAQE-----DFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQP 325 (415)
Q Consensus 254 ~~l~~~~~~l~sgs~dg~I~iwd~~~~~-----~~~~~~~~h~~~V~~l~~spdg~~lasg~~dg~I~iwd~~~~~~ 325 (415)
+...| ..+..|+..+.+++-|..... ....++..|..+. + ++=.+...+.+++|.....+-
T Consensus 310 ~~~~W--~~i~~gt~~~~vrv~~~~~~~~~~~~~l~~~f~~~~~~L--------~-~idv~~~~~~~~~~~~tr~rG 375 (465)
T KOG2714|consen 310 TSGNW--IEIAYGTSSGEVRVIDQHPETVGVGPCLFQTFEVHGSPL--------G-LIDVCSDGGHVRVWNSTRFRG 375 (465)
T ss_pred ccceE--EEecCCccccceEeeeccccccCCCCeEEEEEEecCCCc--------c-eeehhhhCCcceEEeeccccc
Confidence 12333 345566666777776654322 2344455555541 1 222344556789998765443
No 500
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=76.85 E-value=84 Score=31.34 Aligned_cols=139 Identities=14% Similarity=0.177 Sum_probs=84.5
Q ss_pred cEEEEE-cCCeEEEEECCCCCe---EEeEecCCCCCeEEEEEcC-----CCCeEEEEECCCcEEEEECCC--Ce------
Q 014934 179 NVLAVG-LGNCVYLWNACSSKV---TKLCDLGIDDSVCSVGWAN-----RNTHLAVGTSHGKVQIWDASR--CK------ 241 (415)
Q Consensus 179 ~~la~~-~d~~V~iwd~~~~~~---~~~~~~~~~~~V~~v~~sp-----~g~~la~g~~dg~V~iwd~~~--~~------ 241 (415)
..|++| ..|.++||+...+.. ..+++..-..+|..|+.-. +...||+ -.-..+.||.+.. +.
T Consensus 38 d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g~~ 116 (418)
T PF14727_consen 38 DKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHGNQ 116 (418)
T ss_pred cEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccCcE
Confidence 355555 689999999866442 2333334467888887643 2346666 5566788888721 11
Q ss_pred -eeEEecCCCc--cEEEEEee-------CCEEEEEeCCCcEEEEECCCCCccEEEeccccCCeEEEEEeCCCCEEEEEeC
Q 014934 242 -RVRTMEGHRL--RVGALAWS-------SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGN 311 (415)
Q Consensus 242 -~~~~l~~h~~--~V~~l~~~-------~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg~~ 311 (415)
.+..+..|.- ....+++- .+.+++=+.||.+.+++-+.-. ....+.. ---...+.+.+.-..|++++.
T Consensus 117 ~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~-f~~~lp~-~llPgPl~Y~~~tDsfvt~ss 194 (418)
T PF14727_consen 117 YQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFA-FSRFLPD-FLLPGPLCYCPRTDSFVTASS 194 (418)
T ss_pred EEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEE-EEEEcCC-CCCCcCeEEeecCCEEEEecC
Confidence 1222222322 22222221 2688889999999999976543 2223322 222334678888888999998
Q ss_pred CCcEEEEEC
Q 014934 312 DNRLFVWNQ 320 (415)
Q Consensus 312 dg~I~iwd~ 320 (415)
+..|.-|..
T Consensus 195 s~~l~~Yky 203 (418)
T PF14727_consen 195 SWTLECYKY 203 (418)
T ss_pred ceeEEEecH
Confidence 888888864
Done!