BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014938
(415 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 12/87 (13%)
Query: 328 SGLLSQAMNKVIRNKTSA---GTAGPVEAIKNNGDIILHPSLQRRIQHLAKATANTKIHQ 384
S L + MN+++ N T+ AG A + +I++ PSL+ + T + +
Sbjct: 95 SNLANLIMNEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPEL--------FTGL-R 145
Query: 385 APFRNMLFYGPPGTGKTMVAREIARKS 411
AP R +L +GPPG GKTM+A+ +A +S
Sbjct: 146 APARGLLLFGPPGNGKTMLAKAVAAES 172
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 382 IHQAPFRNMLFYGPPGTGKTMVAREIARKS 411
I P R +L YGPPGTGKT++AR +A ++
Sbjct: 233 IGVKPPRGILLYGPPGTGKTLIARAVANET 262
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 382 IHQAPFRNMLFYGPPGTGKTMVAREIARKS 411
I P R +L YGPPGTGKT++AR +A ++
Sbjct: 233 IGVKPPRGILLYGPPGTGKTLIARAVANET 262
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 21/26 (80%)
Query: 386 PFRNMLFYGPPGTGKTMVAREIARKS 411
P R +L YGPPGTGKT++AR +A ++
Sbjct: 237 PPRGILLYGPPGTGKTLIARAVANET 262
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 382 IHQAPFRNMLFYGPPGTGKTMVAREIARKS 411
I P R +L YGPPGTGKT++AR +A ++
Sbjct: 233 IGVKPPRGILLYGPPGTGKTLIARAVANET 262
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 382 IHQAPFRNMLFYGPPGTGKTMVAREIARKS 411
I P R +L YGPPGTGKT++AR +A ++
Sbjct: 233 IGVKPPRGILLYGPPGTGKTLIARAVANET 262
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 366 LQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS 411
+Q ++H K K P + +LFYGPPG GKT++A+ IA +
Sbjct: 493 VQYPVEHPDKFL---KFGMTPSKGVLFYGPPGCGKTLLAKAIANEC 535
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 382 IHQAPFRNMLFYGPPGTGKTMVAREIARKS 411
I P R +L YGPPGTGKT++AR +A ++
Sbjct: 233 IGVKPPRGILLYGPPGTGKTLIARAVANET 262
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 366 LQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS 411
+Q ++H K K P + +LFYGPPG GKT++A+ IA +
Sbjct: 493 VQYPVEHPDKFL---KFGMTPSKGVLFYGPPGCGKTLLAKAIANEC 535
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 14/83 (16%)
Query: 326 PWSGLLSQAMNKVIRNKTSAGTAGPVEAIKNNGDIILHPSLQRRIQHLAKATANTKIHQA 385
P++ +LS+ N ++ + AG G EA+K + ++ P + HL K ++
Sbjct: 4 PFTAILSEKPN--VKWEDVAGLEGAKEALK---EAVILPV---KFPHLFKG------NRK 49
Query: 386 PFRNMLFYGPPGTGKTMVAREIA 408
P +L YGPPGTGK+ +A+ +A
Sbjct: 50 PTSGILLYGPPGTGKSYLAKAVA 72
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 24/39 (61%)
Query: 373 LAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS 411
L +A +I P R +L YGPPGTGKTM+ + +A +
Sbjct: 192 LVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANST 230
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 366 LQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS 411
+Q ++H K K P + +LFYGPPG GKT++A+ IA +
Sbjct: 31 VQYPVEHPDKFL---KFGMTPSKGVLFYGPPGCGKTLLAKAIANEC 73
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 20/26 (76%)
Query: 386 PFRNMLFYGPPGTGKTMVAREIARKS 411
P + +L YGPPGTGKT+ AR +A ++
Sbjct: 242 PPKGILLYGPPGTGKTLCARAVANRT 267
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 14/81 (17%)
Query: 328 SGLLSQAMNKVIRNKTSAGTAGPVEAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPF 387
S +LS+ N ++ + AG G EA+K + ++ P + HL K ++ P
Sbjct: 39 SAILSEKPN--VKWEDVAGLEGAKEALK---EAVILPV---KFPHLFKG------NRKPT 84
Query: 388 RNMLFYGPPGTGKTMVAREIA 408
+L YGPPGTGK+ +A+ +A
Sbjct: 85 SGILLYGPPGTGKSYLAKAVA 105
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 23/31 (74%)
Query: 381 KIHQAPFRNMLFYGPPGTGKTMVAREIARKS 411
K+ P + +L YGPPGTGKT++A+ +A ++
Sbjct: 45 KVGIEPPKGILLYGPPGTGKTLLAKAVATET 75
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 22/31 (70%), Gaps = 3/31 (9%)
Query: 385 APFRNMLFYGPPGTGKTMVAREIARKSVWCS 415
AP + +L +GPPG GKT++AR +A + CS
Sbjct: 52 APAKGLLLFGPPGNGKTLLARAVATE---CS 79
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 14/81 (17%)
Query: 328 SGLLSQAMNKVIRNKTSAGTAGPVEAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPF 387
S +LS+ N ++ + AG G EA+K + ++ P + HL K ++ P
Sbjct: 24 SAILSEKPN--VKWEDVAGLEGAKEALK---EAVILPV---KFPHLFKG------NRKPT 69
Query: 388 RNMLFYGPPGTGKTMVAREIA 408
+L YGPPGTGK+ +A+ +A
Sbjct: 70 SGILLYGPPGTGKSYLAKAVA 90
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 8/54 (14%)
Query: 366 LQRRIQHLAKATANTKIHQAPFRNM--------LFYGPPGTGKTMVAREIARKS 411
L ++I+ L +A F++M L YGPPGTGKT++AR A ++
Sbjct: 186 LDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQT 239
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 14/80 (17%)
Query: 329 GLLSQAMNKVIRNKTSAGTAGPVEAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFR 388
G LS+ N ++ + AG G EA+K + ++ P + HL K ++ P
Sbjct: 16 GSLSEKPN--VKWEDVAGLEGAKEALK---EAVILPV---KFPHLFKG------NRKPTS 61
Query: 389 NMLFYGPPGTGKTMVAREIA 408
+L YGPPGTGK+ +A+ +A
Sbjct: 62 GILLYGPPGTGKSYLAKAVA 81
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 19/23 (82%)
Query: 386 PFRNMLFYGPPGTGKTMVAREIA 408
P + +L YGPPGTGKT++A+ +A
Sbjct: 214 PPKGVLLYGPPGTGKTLLAKAVA 236
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 20/27 (74%)
Query: 385 APFRNMLFYGPPGTGKTMVAREIARKS 411
P + +L +GPPGTGKT++ + IA +S
Sbjct: 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 19/23 (82%)
Query: 386 PFRNMLFYGPPGTGKTMVAREIA 408
P+R +L +GPPGTGK+ +A+ +A
Sbjct: 166 PWRGILLFGPPGTGKSYLAKAVA 188
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 18/21 (85%)
Query: 388 RNMLFYGPPGTGKTMVAREIA 408
+ ++ YGPPGTGKT++AR +A
Sbjct: 183 KGVILYGPPGTGKTLLARAVA 203
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 19/23 (82%)
Query: 386 PFRNMLFYGPPGTGKTMVAREIA 408
P+R +L +GPPGTGK+ +A+ +A
Sbjct: 44 PWRGILLFGPPGTGKSYLAKAVA 66
>pdb|1SXJ|C Chain C, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 340
Score = 35.4 bits (80), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 4/34 (11%)
Query: 382 IHQAPFRNMLFYGPPGTGKT----MVAREIARKS 411
+ + ++LFYGPPGTGKT +AREI K+
Sbjct: 41 VDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKN 74
>pdb|1SXJ|D Chain D, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 353
Score = 35.0 bits (79), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 13/20 (65%), Positives = 15/20 (75%)
Query: 382 IHQAPFRNMLFYGPPGTGKT 401
+ A +MLFYGPPGTGKT
Sbjct: 53 LKSANLPHMLFYGPPGTGKT 72
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 34.7 bits (78), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 366 LQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIA 408
L+ ++ L + +I + +L GPPGTGKT++AR +A
Sbjct: 28 LKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVA 70
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 371 QHLAKATANTK--IHQAPFRNMLFYGPPGTGKTMVAREIARKS 411
QHL A I +M+ +GPPGTGKT +A IAR +
Sbjct: 32 QHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA 74
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 381 KIHQAPFRNMLFYGPPGTGKTMVAREIA 408
K + P ++L +GPPG GKT +A IA
Sbjct: 32 KARKEPLEHLLLFGPPGLGKTTLAHVIA 59
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 20/26 (76%)
Query: 386 PFRNMLFYGPPGTGKTMVAREIARKS 411
P + ++ YG PGTGKT++A+ +A ++
Sbjct: 215 PPKGVILYGAPGTGKTLLAKAVANQT 240
>pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|B Chain B, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|C Chain C, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|D Chain D, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|E Chain E, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|F Chain F, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
Length = 327
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 8/51 (15%)
Query: 359 DIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIAR 409
DI+ + +R++H K + ++LF GPPG GKT A +AR
Sbjct: 26 DIVGQEHIVKRLKHYVKTGSMP--------HLLFAGPPGVGKTTAALALAR 68
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 381 KIHQAPFRNMLFYGPPGTGKTMVAREIA 408
K + P ++L +GPPG GKT +A IA
Sbjct: 32 KARKEPLEHLLLFGPPGLGKTTLAHVIA 59
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 381 KIHQAPFRNMLFYGPPGTGKTMVAREIA 408
K + P ++L +GPPG GKT +A IA
Sbjct: 32 KARKEPLEHLLLFGPPGLGKTTLAHVIA 59
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 388 RNMLFYGPPGTGKTMVAREIA 408
+ +L GPPGTGKT++A+ +A
Sbjct: 45 KGVLLVGPPGTGKTLLAKAVA 65
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 17/21 (80%)
Query: 388 RNMLFYGPPGTGKTMVAREIA 408
+ +L GPPGTGKT++A+ IA
Sbjct: 46 KGVLMVGPPGTGKTLLAKAIA 66
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 366 LQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIA 408
L+ ++ L + +I + +L GPPGTG T++AR +A
Sbjct: 28 LKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGATLLARAVA 70
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 367
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 4/31 (12%)
Query: 388 RNMLFYGPPGTGKT----MVAREIARKSVWC 414
R +L GPPGTGKT +A+E+ K +C
Sbjct: 78 RAVLLAGPPGTGKTALALAIAQELGSKVPFC 108
>pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|B Chain B, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|C Chain C, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|D Chain D, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO0|A Chain A, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|B Chain B, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|C Chain C, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|D Chain D, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|E Chain E, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|F Chain F, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
Length = 442
Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 383 HQAPFRNMLFYGPPGTGKTMVAREIAR 409
H+ +N+L GP G GKT +AR +A+
Sbjct: 45 HEVTPKNILMIGPTGVGKTEIARRLAK 71
>pdb|1E94|E Chain E, Hslv-Hslu From E.Coli
pdb|1E94|F Chain F, Hslv-Hslu From E.Coli
pdb|1HT2|E Chain E, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|F Chain F, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|G Chain G, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|H Chain H, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT1|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|G Chain G, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|I Chain I, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
Length = 449
Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 383 HQAPFRNMLFYGPPGTGKTMVAREIAR 409
H+ +N+L GP G GKT +AR +A+
Sbjct: 52 HEVTPKNILMIGPTGVGKTEIARRLAK 78
>pdb|1G4A|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|K Chain K, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|L Chain L, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1YYF|A Chain A, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
pdb|1YYF|B Chain B, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
Length = 443
Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 383 HQAPFRNMLFYGPPGTGKTMVAREIAR 409
H+ +N+L GP G GKT +AR +A+
Sbjct: 46 HEVTPKNILMIGPTGVGKTEIARRLAK 72
>pdb|1G3I|A Chain A, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|B Chain B, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|C Chain C, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|D Chain D, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|E Chain E, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|F Chain F, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|S Chain S, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|T Chain T, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|U Chain U, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|V Chain V, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|W Chain W, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|X Chain X, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G41|A Chain A, Crystal Structure Of Hslu Haemophilus Influenzae
pdb|1KYI|A Chain A, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|B Chain B, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|C Chain C, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|D Chain D, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|E Chain E, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|F Chain F, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|S Chain S, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|T Chain T, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|U Chain U, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|V Chain V, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|W Chain W, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|X Chain X, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
Length = 444
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 383 HQAPFRNMLFYGPPGTGKTMVAREIAR 409
H+ +N+L GP G GKT +AR +A+
Sbjct: 46 HEVTPKNILMIGPTGVGKTEIARRLAK 72
>pdb|3SYL|A Chain A, Crystal Structure Of The Aaa+ Protein Cbbx, Native
Structure
pdb|3SYL|B Chain B, Crystal Structure Of The Aaa+ Protein Cbbx, Native
Structure
Length = 309
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 383 HQAPFRNMLFYGPPGTGKTMVAREIA 408
H+ P +M F G PGTGKT VA ++A
Sbjct: 63 HETPTLHMSFTGNPGTGKTTVALKMA 88
>pdb|2CHQ|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHQ|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHQ|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHV|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHV|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|D Chain D, Replication Factor C Adpnp Complex
pdb|2CHV|E Chain E, Replication Factor C Adpnp Complex
pdb|2CHV|F Chain F, Replication Factor C Adpnp Complex
Length = 319
Score = 32.3 bits (72), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 16/21 (76%)
Query: 389 NMLFYGPPGTGKTMVAREIAR 409
++LF GPPGTGKT A +AR
Sbjct: 40 HLLFSGPPGTGKTATAIALAR 60
>pdb|2CHG|A Chain A, Replication Factor C Domains 1 And 2
pdb|2CHG|B Chain B, Replication Factor C Domains 1 And 2
pdb|2CHG|C Chain C, Replication Factor C Domains 1 And 2
pdb|2CHG|D Chain D, Replication Factor C Domains 1 And 2
Length = 226
Score = 32.3 bits (72), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 16/21 (76%)
Query: 389 NMLFYGPPGTGKTMVAREIAR 409
++LF GPPGTGKT A +AR
Sbjct: 40 HLLFSGPPGTGKTATAIALAR 60
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 32.0 bits (71), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 4/31 (12%)
Query: 388 RNMLFYGPPGTGKT----MVAREIARKSVWC 414
R +L GPPGTGKT +A+E+ K +C
Sbjct: 64 RAVLLAGPPGTGKTALALAIAQELGSKVPFC 94
>pdb|3ZUH|A Chain A, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|B Chain B, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|C Chain C, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|D Chain D, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|E Chain E, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|F Chain F, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
Length = 289
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 383 HQAPFRNMLFYGPPGTGKTMVAREIA 408
H+ P +M F G PGTGKT VA ++A
Sbjct: 56 HETPTLHMSFTGNPGTGKTTVALKMA 81
>pdb|1SXJ|A Chain A, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 516
Score = 32.0 bits (71), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 387 FRNMLFYGPPGTGKTMVAREIAR 409
FR + YGPPG GKT A +A+
Sbjct: 77 FRAAMLYGPPGIGKTTAAHLVAQ 99
>pdb|1OFH|A Chain A, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|B Chain B, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|C Chain C, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFI|A Chain A, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|B Chain B, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|C Chain C, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
Length = 310
Score = 32.0 bits (71), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 383 HQAPFRNMLFYGPPGTGKTMVAREIAR 409
H+ +N+L GP G GKT +AR +A+
Sbjct: 46 HEVTPKNILMIGPTGVGKTEIARRLAK 72
>pdb|1IM2|A Chain A, Hslu, Haemophilus Influenzae, Selenomethionine Variant
Length = 444
Score = 31.6 bits (70), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 383 HQAPFRNMLFYGPPGTGKTMVAREIAR 409
H+ +N+L GP G GKT +AR +A+
Sbjct: 46 HEVTPKNILXIGPTGVGKTEIARRLAK 72
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 31.6 bits (70), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 17/22 (77%)
Query: 390 MLFYGPPGTGKTMVAREIARKS 411
+L GPPG GKT++A+ +A +S
Sbjct: 47 VLLAGPPGCGKTLLAKAVANES 68
>pdb|1QVR|A Chain A, Crystal Structure Analysis Of Clpb
pdb|1QVR|B Chain B, Crystal Structure Analysis Of Clpb
pdb|1QVR|C Chain C, Crystal Structure Analysis Of Clpb
Length = 854
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 375 KATANTKIHQAPFRNMLFYGPPGTGKTMVAREIA 408
+A A K P + LF GP G GKT +A+ +A
Sbjct: 576 RARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLA 609
>pdb|1RKB|A Chain A, The Structure Of Adrenal Gland Protein Ad-004
Length = 173
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 389 NMLFYGPPGTGKTMVAREIARKS 411
N+L G PG GKT + +E+A KS
Sbjct: 6 NILLTGTPGVGKTTLGKELASKS 28
>pdb|2P65|A Chain A, Crystal Structure Of The First Nucleotide Binding Domain
Of Chaperone Clpb1, Putative, (Pv089580) From Plasmodium
Vivax
Length = 187
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 14/80 (17%)
Query: 333 QAMNKVIRNKTSAGTAGPVEAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLF 392
QA+ K R+ T+ AG ++ + ++R IQ L++ T N N +
Sbjct: 3 QALEKYSRDLTALARAGKLDPVIGR-----DTEIRRAIQILSRRTKN---------NPIL 48
Query: 393 YGPPGTGKTMVAREIARKSV 412
G PG GKT + +A K V
Sbjct: 49 LGDPGVGKTAIVEGLAIKIV 68
>pdb|3IIJ|A Chain A, The Structure Of Hcinap-Adp Complex At 1.76 Angstroms
Resolution.
pdb|3IIK|A Chain A, The Structure Of Hcinap-So4 Complex At 1.95 Angstroms
Resolution
pdb|3IIL|A Chain A, The Structure Of Hcinap-Mgadp-Pi Complex At 2.0 Angstroms
Resolution
pdb|3IIM|A Chain A, The Structure Of Hcinap-Dadp Complex At 2.0 Angstroms
Resolution
Length = 180
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 389 NMLFYGPPGTGKTMVAREIARKS 411
N+L G PG GKT + +E+A KS
Sbjct: 13 NILLTGTPGVGKTTLGKELASKS 35
>pdb|3PXI|A Chain A, Structure Of Meca108:clpc
pdb|3PXI|B Chain B, Structure Of Meca108:clpc
pdb|3PXI|C Chain C, Structure Of Meca108:clpc
Length = 758
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 386 PFRNMLFYGPPGTGKTMVAREIA 408
P + +F GP G GKT +AR +A
Sbjct: 520 PIGSFIFLGPTGVGKTELARALA 542
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 388 RNMLFYGPPGTGKTMVAREIA 408
+ L GPPG GKT++A+ +A
Sbjct: 40 KGALLLGPPGCGKTLLAKAVA 60
>pdb|3HWS|A Chain A, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|B Chain B, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|C Chain C, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|D Chain D, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|E Chain E, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|F Chain F, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
Length = 363
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 389 NMLFYGPPGTGKTMVAREIAR 409
N+L GP G+GKT++A +AR
Sbjct: 53 NILLIGPTGSGKTLLAETLAR 73
>pdb|3HTE|A Chain A, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|B Chain B, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|C Chain C, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|D Chain D, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|E Chain E, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|F Chain F, Crystal Structure Of Nucleotide-Free Hexameric Clpx
Length = 363
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 389 NMLFYGPPGTGKTMVAREIAR 409
N+L GP G+GKT++A +AR
Sbjct: 53 NILLIGPTGSGKTLLAETLAR 73
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 388 RNMLFYGPPGTGKTMVAREIA 408
+ +L GPPG GKT +AR +A
Sbjct: 65 KGVLLVGPPGVGKTHLARAVA 85
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 388 RNMLFYGPPGTGKTMVAREIA 408
+ +L GPPG GKT +AR +A
Sbjct: 74 KGVLLVGPPGVGKTHLARAVA 94
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 388 RNMLFYGPPGTGKTMVAREIA 408
+ +L GPPG GKT +AR +A
Sbjct: 74 KGVLLVGPPGVGKTHLARAVA 94
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 367 QRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIAR 409
+R +++LA TK + P + GPPG GKT +A+ IA+
Sbjct: 91 ERILEYLA-VQKLTKSLKGPI--LCLAGPPGVGKTSLAKSIAK 130
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 388 RNMLFYGPPGTGKTMVAREIA 408
+ +L GPPG GKT +AR +A
Sbjct: 50 KGVLLVGPPGVGKTHLARAVA 70
>pdb|4FCV|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCV|B Chain B, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCV|C Chain C, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|C Chain C, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|F Chain F, Crystal Structure Of The C-Terminal Domain Of Clpb
Length = 311
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 375 KATANTKIHQAPFRNMLFYGPPGTGKTMVAREIA 408
+A A K P + LF GP G GKT +A+ +A
Sbjct: 35 RARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLA 68
>pdb|4FCT|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|B Chain B, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|D Chain D, Crystal Structure Of The C-Terminal Domain Of Clpb
Length = 308
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 375 KATANTKIHQAPFRNMLFYGPPGTGKTMVAREIA 408
+A A K P + LF GP G GKT +A+ +A
Sbjct: 32 RARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLA 65
>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex
pdb|4AI6|B Chain B, Dynein Motor Domain - Adp Complex
pdb|4AKG|A Chain A, Dynein Motor Domain - Atp Complex
pdb|4AKG|B Chain B, Dynein Motor Domain - Atp Complex
pdb|4AKH|A Chain A, Dynein Motor Domain - Amppnp Complex
pdb|4AKH|B Chain B, Dynein Motor Domain - Amppnp Complex
pdb|4AKI|A Chain A, Dynein Motor Domain - Luac Derivative
pdb|4AKI|B Chain B, Dynein Motor Domain - Luac Derivative
Length = 2695
Score = 29.6 bits (65), Expect = 3.2, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 388 RNMLFYGPPGTGKTMVAREIARKS 411
R ++ GPPG+GKTM+ R S
Sbjct: 1268 RGIILCGPPGSGKTMIMNNALRNS 1291
>pdb|2V1U|A Chain A, Structure Of The Aeropyrum Pernix Orc1 Protein In Complex
With Dna
Length = 387
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 389 NMLFYGPPGTGKTMVAREIARK 410
N L YG GTGKT VAR + R+
Sbjct: 46 NALLYGLTGTGKTAVARLVLRR 67
>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
pdb|3QMZ|B Chain B, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
Length = 2486
Score = 29.6 bits (65), Expect = 3.3, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 388 RNMLFYGPPGTGKTMVAREIARKS 411
R ++ GPPG+GKTM+ R S
Sbjct: 1049 RGIILCGPPGSGKTMIMNNALRNS 1072
>pdb|4EFP|A Chain A, Bombyx Mori Lipoprotein 7 Isolated From Its Natural Source
At 1.33 A Resolution
pdb|4EFP|B Chain B, Bombyx Mori Lipoprotein 7 Isolated From Its Natural Source
At 1.33 A Resolution
pdb|4EFQ|A Chain A, Bombyx Mori Lipoprotein 7 - Platinum Derivative At 1.94 A
Resolution
pdb|4EFQ|B Chain B, Bombyx Mori Lipoprotein 7 - Platinum Derivative At 1.94 A
Resolution
pdb|4EFR|A Chain A, Bombyx Mori Lipoprotein 7 (crystal Form Ii) At 2.50 A
Resolution
pdb|4EFR|B Chain B, Bombyx Mori Lipoprotein 7 (crystal Form Ii) At 2.50 A
Resolution
pdb|4EFR|C Chain C, Bombyx Mori Lipoprotein 7 (crystal Form Ii) At 2.50 A
Resolution
pdb|4EFR|D Chain D, Bombyx Mori Lipoprotein 7 (crystal Form Ii) At 2.50 A
Resolution
Length = 239
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 39/93 (41%), Gaps = 17/93 (18%)
Query: 239 NRRMLIERINGEREKWLA---AINTTFSHIEEGVRSLLT------------DRNKLVMTV 283
N ++ + +N ER ++L N H+ GV S+ + D++ L
Sbjct: 137 NNKVYFKILNTERNQYLVLGVGTNPNGDHMAFGVNSVDSFRAQXYLQPAKYDKDNLFYIY 196
Query: 284 GGATALAAGIYTTRE--GARVTWGYVNRILGQP 314
+ A + T E G R+ WGY R++G P
Sbjct: 197 NREYSKALTLSRTLETSGNRMAWGYNGRVIGSP 229
>pdb|1NSF|A Chain A, D2 Hexamerization Domain Of N-Ethylmaleimide Sensitive
Factor (Nsf)
Length = 273
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 20/80 (25%)
Query: 332 SQAMNKVIRNKTSAGTAGPVEAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNML 391
S MN +I+ PV + ++G++ L + T N+ + P ++L
Sbjct: 28 SYIMNGIIK------WGDPVTRVLDDGEL------------LVQQTKNS--DRTPLVSVL 67
Query: 392 FYGPPGTGKTMVAREIARKS 411
GPP +GKT +A +IA +S
Sbjct: 68 LEGPPHSGKTALAAKIAEES 87
>pdb|3PUB|A Chain A, Crystal Structure Of The Bombyx Mori Low Molecular Weight
Lipoprotein 7 (Bmlp7)
pdb|3PUB|B Chain B, Crystal Structure Of The Bombyx Mori Low Molecular Weight
Lipoprotein 7 (Bmlp7)
Length = 251
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 39/93 (41%), Gaps = 17/93 (18%)
Query: 239 NRRMLIERINGEREKWLA---AINTTFSHIEEGVRSLLT------------DRNKLVMTV 283
N ++ + +N ER ++L N H+ GV S+ + D++ L
Sbjct: 138 NNKVYFKILNTERNQYLVLGVGTNPNGDHMAFGVNSVDSFRAQWYLQPAKYDKDNLFYIY 197
Query: 284 GGATALAAGIYTTRE--GARVTWGYVNRILGQP 314
+ A + T E G R+ WGY R++G P
Sbjct: 198 NREYSKALTLSRTLETSGNRMAWGYNGRVIGSP 230
>pdb|4B89|A Chain A, Mif4g Domain Of The Yeast Not1
pdb|4B8A|A Chain A, Structure Of Yeast Not1 Mif4g Domain Co-Crystallized With
Caf1
pdb|4B8C|B Chain B, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|G Chain G, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|H Chain H, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|I Chain I, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 249
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 11/87 (12%)
Query: 327 WSGLLSQAMNKVIRNKTSAGTAGPVEAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAP 386
W G ++ A+NK I++K A +EA K N I+ P + + +Q + +KI + P
Sbjct: 135 WLGCITLALNKPIKHKNIAFREMLIEAYKENRLEIVVPFVTKILQR----ASESKIFKPP 190
Query: 387 FRNMLFYGPPGTGKTMVAREIARKSVW 413
P G + E+ K+ W
Sbjct: 191 -------NPWTVGILKLLIELNEKANW 210
>pdb|1D2N|A Chain A, D2 Domain Of N-Ethylmaleimide-Sensitive Fusion Protein
Length = 272
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 20/80 (25%)
Query: 332 SQAMNKVIRNKTSAGTAGPVEAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNML 391
S MN +I+ PV + ++G++ L + T N+ + P ++L
Sbjct: 29 SYIMNGIIK------WGDPVTRVLDDGEL------------LVQQTKNS--DRTPLVSVL 68
Query: 392 FYGPPGTGKTMVAREIARKS 411
GPP +GKT +A +IA +S
Sbjct: 69 LEGPPHSGKTALAAKIAEES 88
>pdb|1EG5|A Chain A, Nifs-like Protein
pdb|1EG5|B Chain B, Nifs-like Protein
Length = 384
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 5/64 (7%)
Query: 345 AGTAGPVEAI-----KNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTG 399
GT PVE + K N + ++H + I + + ++ A F F+GP G G
Sbjct: 152 VGTIQPVEDVTRIVKKKNKETLVHVDAVQTIGKIPFSLEKLEVDYASFSAHKFHGPKGVG 211
Query: 400 KTMV 403
T +
Sbjct: 212 ITYI 215
>pdb|3SYK|A Chain A, Crystal Structure Of The Aaa+ Protein Cbbx,
Selenomethionine Structure
pdb|3SYK|B Chain B, Crystal Structure Of The Aaa+ Protein Cbbx,
Selenomethionine Structure
Length = 309
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 383 HQAPFRNMLFYGPPGTGKTMVAREIA 408
H+ P + F G PGTGKT VA + A
Sbjct: 63 HETPTLHXSFTGNPGTGKTTVALKXA 88
>pdb|1ECX|A Chain A, Nifs-Like Protein
pdb|1ECX|B Chain B, Nifs-Like Protein
Length = 384
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 5/64 (7%)
Query: 345 AGTAGPVEAI-----KNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTG 399
GT PVE + K N + ++H + I + + ++ A F F+GP G G
Sbjct: 152 VGTIQPVEDVTRIVKKKNKETLVHVDAVQTIGKIPFSLEKLEVDYASFSAHKFHGPKGVG 211
Query: 400 KTMV 403
T +
Sbjct: 212 ITYI 215
>pdb|3R8C|A Chain A, Crystal Structure Of Cytidylate Kinase (Cmk) From
Mycobacterium Abscessus
pdb|3R8C|B Chain B, Crystal Structure Of Cytidylate Kinase (Cmk) From
Mycobacterium Abscessus
pdb|4DIE|A Chain A, Crystal Structure Of A Cytidylate Kinase Cmk From
Mycobacterium Abscessus Bound To
Cytidine-5'-Monophosphate
pdb|4DIE|B Chain B, Crystal Structure Of A Cytidylate Kinase Cmk From
Mycobacterium Abscessus Bound To
Cytidine-5'-Monophosphate
pdb|4DIE|C Chain C, Crystal Structure Of A Cytidylate Kinase Cmk From
Mycobacterium Abscessus Bound To
Cytidine-5'-Monophosphate
pdb|4DIE|D Chain D, Crystal Structure Of A Cytidylate Kinase Cmk From
Mycobacterium Abscessus Bound To
Cytidine-5'-Monophosphate
Length = 228
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 11/17 (64%), Positives = 15/17 (88%)
Query: 394 GPPGTGKTMVAREIARK 410
GP GTGK+ VA+E+AR+
Sbjct: 11 GPSGTGKSSVAKELARQ 27
>pdb|3N2T|A Chain A, Structure Of The Glycerol Dehydrogenase Akr11b4 From
Gluconobacter Oxydans
Length = 348
Score = 28.1 bits (61), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Query: 86 FNSSRHAREAFDIMRKQEQTRLAELDVEKVHYEAIQSQVDVERQRKLAEEHRNLVQQKAQ 145
F SR AR ++ + R+ +D+E++H+ ++ +D E R+L + H Q +
Sbjct: 116 FRDSRPARIRKEVEDSLRRLRVETIDLEQIHWPDDKTPID-ESARELQKLH-----QDGK 169
Query: 146 ARAQGLRN 153
RA G+ N
Sbjct: 170 IRALGVSN 177
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.127 0.353
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,429,459
Number of Sequences: 62578
Number of extensions: 332923
Number of successful extensions: 1308
Number of sequences better than 100.0: 130
Number of HSP's better than 100.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 51
Number of HSP's that attempted gapping in prelim test: 1183
Number of HSP's gapped (non-prelim): 159
length of query: 415
length of database: 14,973,337
effective HSP length: 101
effective length of query: 314
effective length of database: 8,652,959
effective search space: 2717029126
effective search space used: 2717029126
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (25.0 bits)