BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014938
(415 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6PAX2|ATD3B_XENLA ATPase family AAA domain-containing protein 3-B OS=Xenopus laevis
GN=atad3-b PE=2 SV=1
Length = 593
Score = 166 bits (419), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 119/346 (34%), Positives = 182/346 (52%), Gaps = 27/346 (7%)
Query: 69 SGFDPEALERAAKALREFNSSRHAREAFDIMRKQEQTRLAELDVEKVHYEAIQSQVDVER 128
S FDP LERAAKA RE + SRHA+EA ++ + QE+T E + YEA Q+ E+
Sbjct: 44 SNFDPTGLERAAKAARELDQSRHAKEALNLAKVQEETLQMEQQAKIKEYEAAVEQIKNEQ 103
Query: 129 QRKLAEEHRNLVQQKA---QARAQGLRNEDELARKRLQTDHEAQRRHNTELVKMQEESSI 185
R +EE R + ++ QARAQ +D+LAR+R + Q+ N E ++ QEES
Sbjct: 104 IRVQSEEKRKTLNEETKQHQARAQ---YQDKLARQRYEDQLRQQQLQNEENLRRQEESVQ 160
Query: 186 RKEQARRSTEEQIQAQQRLTEKERAEIERETIRVKAMAEAEGRAHEAKLTEDHNRRMLIE 245
++E R++T E E+ + ++ AEA RA + D R +
Sbjct: 161 KQEAMRKATVEH-----------EMELRHKNDMLRIEAEAHARAKVERENADIIREQIRL 209
Query: 246 RINGEREKWLAAINTTFSHIEEGVRSLLTDRNKLVMTVGGATALAAGIYTTREGARVTWG 305
+ R+ L +I T + EG R+ ++D +K+ TV G T LA G+YT + G V
Sbjct: 210 KAAEHRQTVLESIKTAGTVFGEGFRTFISDWDKVTATVAGLTLLAVGVYTAKNGTGVAGR 269
Query: 306 YVNRILGQPSLIRESSIGKFPWSGLLSQAMNKVIRNKTSAGTAGPVEAIKNNGDIILHPS 365
Y+ LG+PSL+R++S + ++K I +K G +IL P
Sbjct: 270 YIEARLGKPSLVRDTSRITVVEAIKHPIKISKRIFSKIQDALEG----------VILSPR 319
Query: 366 LQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS 411
L+ R++ +A AT NTK ++ +RN+L YGPPGTGKT+ A+++A S
Sbjct: 320 LEERVRDIAIATRNTKANKGLYRNILMYGPPGTGKTLFAKKLAMHS 365
>sp|Q6NVR9|ATAD3_XENTR ATPase family AAA domain-containing protein 3 OS=Xenopus tropicalis
GN=atad3 PE=2 SV=1
Length = 594
Score = 164 bits (416), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 125/363 (34%), Positives = 190/363 (52%), Gaps = 61/363 (16%)
Query: 69 SGFDPEALERAAKALREFNSSRHAREAFDIMRKQEQTRLAELDVEKVHYEAIQSQVDVER 128
S FDP LERAAKA RE + SRHA+EA ++ + QE+T E + YEA Q+ E+
Sbjct: 44 SNFDPTGLERAAKAARELDQSRHAKEALNLAKVQEETLQLEQQSKIKEYEAAVEQLKNEQ 103
Query: 129 QRKLAEEHRNLVQQKA---QARAQGLRNEDELARKRLQTDHEAQRRHNTELVKMQEESSI 185
R AEE R + ++ QARAQ +D+LAR+R + Q+ N E ++ QEES
Sbjct: 104 IRVQAEERRKTLNEETKQHQARAQ---YQDKLARQRYEDQLRQQQLQNEENLRRQEESVQ 160
Query: 186 RKEQARRSTEE------------QIQAQQRL---TEKERAEIERETIRVKAMAEAEGRAH 230
++E R++T E +I+A+ R E+E A+I RE IR+KA
Sbjct: 161 KQEAMRKATVEHEMELRHKNEMLRIEAEARARAKVERENADIIRENIRLKAA-------- 212
Query: 231 EAKLTEDHNRRMLIERINGEREKWLAAINTTFSHIEEGVRSLLTDRNKLVMTVGGATALA 290
+H R+ L +I T + EG R+ ++D +K+ TV G + LA
Sbjct: 213 ------EH------------RQTVLESIKTAGTVFGEGFRAFISDWDKVTATVAGLSLLA 254
Query: 291 AGIYTTREGARVTWGYVNRILGQPSLIRESSIGKFPWSGLLSQ--AMNKVIRNKTSAGTA 348
GIYT + V Y+ LG+PSL+R++S +F + + ++K + +K
Sbjct: 255 VGIYTAKNATGVAGRYIEARLGKPSLVRDTS--RFTVAEAVKHPVKISKRLLSKIQDALE 312
Query: 349 GPVEAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIA 408
G +IL P L+ R++ +A AT NTK ++ +RN+L YGPPGTGKT+ A+++A
Sbjct: 313 G----------VILSPKLEERVRDIAIATRNTKANKGLYRNILMYGPPGTGKTLFAKKLA 362
Query: 409 RKS 411
S
Sbjct: 363 MHS 365
>sp|Q58E76|ATD3A_XENLA ATPase family AAA domain-containing protein 3-A OS=Xenopus laevis
GN=atad3-a PE=2 SV=1
Length = 593
Score = 164 bits (414), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 124/361 (34%), Positives = 186/361 (51%), Gaps = 57/361 (15%)
Query: 69 SGFDPEALERAAKALREFNSSRHAREAFDIMRKQEQTRLAELDVEKVHYEAIQSQVDVER 128
S FDP LERAAKA RE + SRHA+EA ++ + QE+T E + YEA Q+ E+
Sbjct: 44 SNFDPTGLERAAKAARELDQSRHAKEAINLAKVQEETLQMEQQAKIKEYEAAVEQLKNEQ 103
Query: 129 QRKLAEEHRNLVQQKA---QARAQGLRNEDELARKRLQTDHEAQRRHNTELVKMQEESSI 185
R AEE R + ++ QARAQ +D+LAR+R + Q+ N E ++ QE+S
Sbjct: 104 IRVQAEERRKTLNEETKQHQARAQ---YQDKLARQRYEDQLRQQQLQNEENLRRQEDSVQ 160
Query: 186 RKEQARRSTEE------------QIQAQQRL---TEKERAEIERETIRVKAMAEAEGRAH 230
++E RR+T E +I+A+ R E+E A+I RE IR+KA
Sbjct: 161 KQEAMRRATVEHEMELRHKNEMLRIEAEARAQAKVERENADIIREQIRLKAA-------- 212
Query: 231 EAKLTEDHNRRMLIERINGEREKWLAAINTTFSHIEEGVRSLLTDRNKLVMTVGGATALA 290
+H R+ L +I T + EG R+ ++D +K+ TV G T LA
Sbjct: 213 ------EH------------RQTVLESIKTAGTVFGEGFRTFISDWDKVTATVAGLTLLA 254
Query: 291 AGIYTTREGARVTWGYVNRILGQPSLIRESSIGKFPWSGLLSQAMNKVIRNKTSAGTAGP 350
G+YT + V Y+ LG+PSL+R++S + + K + +K G
Sbjct: 255 VGVYTAKNATGVAGRYIEARLGKPSLVRDTSRITVAEAVKHPIKITKRLYSKIQDALEG- 313
Query: 351 VEAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARK 410
+IL P L+ R++ +A AT NTK ++ +RN+L YGPPGTGKT+ A+++A
Sbjct: 314 ---------VILSPRLEERVRDIAIATRNTKANKGLYRNILMYGPPGTGKTLFAKKLAMH 364
Query: 411 S 411
S
Sbjct: 365 S 365
>sp|Q20748|ATAD3_CAEEL ATPase family AAA domain-containing protein 3 OS=Caenorhabditis
elegans GN=atad-3 PE=3 SV=2
Length = 595
Score = 162 bits (409), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 124/350 (35%), Positives = 187/350 (53%), Gaps = 39/350 (11%)
Query: 71 FDPEALERAAKALREFNSSRHAREAFDIMRKQEQTRLAELDVEKVHYEAIQSQVDVERQR 130
FD ALERAAKA R+ +A+EA ++ R QE TR E++ E EA + + E R
Sbjct: 47 FDSTALERAAKAARDLEKFPNAKEALELSRMQEVTRQKEVENETKKIEAQLANMKSEHIR 106
Query: 131 KLAEEHRNLVQQKAQARAQGLRNEDELARKRLQTDHEAQRRHNTELVKMQEESSIRKEQA 190
EE R + ++ + +D+LARKR + + + R E ++ QEES ++EQ
Sbjct: 107 VAEEERRKTLGEETKHAHSRAEYQDQLARKRAEEELAMKARMQEESLRKQEESVKKQEQL 166
Query: 191 RRSTEEQIQAQQRLTEKERAEIERETIRVKAMAEAEGR---AHEAKLTEDHNRRMLIERI 247
R+ T E A + E E+ I+ ET R +A A + R + KL E+ NR+ +IE+
Sbjct: 167 RKQTIEHELALKHKYELEK--IDAET-RARAKAARDNRDVNLEQMKLHEEENRKTVIEK- 222
Query: 248 NGEREKWLAAINTTFSHIEEGVRSLLTDRNKLVMTVGGATALAAGIYTTREGARVTWGYV 307
I T+ I G+ L D+ K+ VGG TALA G YT + G VT Y+
Sbjct: 223 ----------IKTSGELIGSGLNQFLNDKTKIAAAVGGLTALAVGWYTAKRGTGVTARYI 272
Query: 308 NRILGQPSLIRESS------IGKFPWSGLLSQAMNKVIRNKTSAGTAGPVEAIKNNGDII 361
LG+PSL+RE+S + K P + Q M + ++ P+ NG ++
Sbjct: 273 ESRLGKPSLVRETSRITPLEVLKHPIKSV--QMMTRQKKD--------PL-----NG-VV 316
Query: 362 LHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS 411
L P+L+RR++ +A T+NTK + FRN++FYGPPGTGKT+ A+ +A+ S
Sbjct: 317 LPPALERRLRDIAITTSNTKRNNGLFRNVMFYGPPGTGKTLFAKSLAQHS 366
>sp|A7YWC4|ATAD3_BOVIN ATPase family AAA domain-containing protein 3 OS=Bos taurus
GN=ATAD3 PE=2 SV=1
Length = 586
Score = 157 bits (397), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 125/361 (34%), Positives = 187/361 (51%), Gaps = 57/361 (15%)
Query: 69 SGFDPEALERAAKALREFNSSRHAREAFDIMRKQEQTRLAELDVEKVHYEAIQSQVDVER 128
S FDP LERAAKA RE SRHA+EA + + QEQT E + YEA Q+ ++
Sbjct: 47 SNFDPTGLERAAKAARELEHSRHAKEALSLAQMQEQTLQLEHQAKLKEYEAAVEQLKGDQ 106
Query: 129 QRKLAEEHRNLVQQKA---QARAQGLRNEDELARKRLQTDHEAQRRHNTELVKMQEESSI 185
R AEE R + ++ QARAQ +D+LAR+R + + Q+ N E ++ QEES
Sbjct: 107 IRVQAEERRKTLSEETRQHQARAQ---YQDKLARQRYEDQLKQQQLLNEENLRKQEESVQ 163
Query: 186 RKEQARRSTEEQIQAQQRLTEKER---------------AEIERETIRVKAMAEAEGRAH 230
++E RR+T E+ + E R A+I RE IR+KA
Sbjct: 164 KQEALRRATVEREMELRHKNEMLRVEAEARARAKAERENADIIREQIRLKAA-------- 215
Query: 231 EAKLTEDHNRRMLIERINGEREKWLAAINTTFSHIEEGVRSLLTDRNKLVMTVGGATALA 290
+H R+ L +I T + EG R+ +TD +K+ TV G T LA
Sbjct: 216 ------EH------------RQTILESIRTAGTLFGEGFRAFVTDWDKVTATVAGLTLLA 257
Query: 291 AGIYTTREGARVTWGYVNRILGQPSLIRESSIGKFPWSGLLSQAMNKVIRNKTSAGTAGP 350
GIY+ + V Y+ LG+PSL+RE+S + +A+ I+ + P
Sbjct: 258 VGIYSAKNATSVAGRYIEARLGKPSLVRETS------RITVLEALRHPIQVSRRL-LSKP 310
Query: 351 VEAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARK 410
+A++ ++L PSL+ R++ +A AT NTK +++ +RN+L YGPPGTGKT+ A+++A
Sbjct: 311 QDALEG---VVLSPSLEARVRDIAIATRNTKKNKSLYRNVLMYGPPGTGKTLFAKKLALH 367
Query: 411 S 411
S
Sbjct: 368 S 368
>sp|Q5T9A4|ATD3B_HUMAN ATPase family AAA domain-containing protein 3B OS=Homo sapiens
GN=ATAD3B PE=1 SV=1
Length = 648
Score = 155 bits (391), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 122/346 (35%), Positives = 191/346 (55%), Gaps = 27/346 (7%)
Query: 69 SGFDPEALERAAKALREFNSSRHAREAFDIMRKQEQTRLAELDVEKVHYEAIQSQVDVER 128
S FDP LERAAKA RE SR+A+EA ++ + QEQT E + YEA Q+ E+
Sbjct: 48 SNFDPTGLERAAKAARELEHSRYAKEALNLAQMQEQTLQLEQQSKLKEYEAAVEQLKSEQ 107
Query: 129 QRKLAEEHRNLVQQKA---QARAQGLRNEDELARKRLQTDHEAQRRHNTELVKMQEESSI 185
R AEE R + ++ QARAQ +D+LAR+R + + Q+ N E ++ QEES
Sbjct: 108 IRAQAEERRKTLSEETRQHQARAQ---YQDKLARQRYEDQLKQQQLLNEENLRKQEESVQ 164
Query: 186 RKEQARRSTEEQIQAQQRLTEKERAEIERETIRVKAMAEAEGRAHEAKLTEDHNRRMLIE 245
++E RR+T ++ + L K E +RV+ EA RA + D R +
Sbjct: 165 KQEAMRRAT---VEREMELRHKN------EMLRVE--TEARARAKAERENADIIREQIRL 213
Query: 246 RINGEREKWLAAINTTFSHIEEGVRSLLTDRNKLVMTVGGATALAAGIYTTREGARVTWG 305
+ + R+ L +I T + EG R+ +TDR+K+ TV G T LA G+Y+ + VT
Sbjct: 214 KASEHRQTVLESIRTAGTLFGEGFRAFVTDRDKVTATVAGLTLLAVGVYSAKNATAVTGR 273
Query: 306 YVNRILGQPSLIRESSIGKFPWSGLLSQAMNKVIRNKTSAGTAGPVEAIKNNGDIILHPS 365
++ LG+PSL+RE+S + +A+ I+ + P + ++ ++L PS
Sbjct: 274 FIEARLGKPSLVRETS------RITVLEALRHPIQVSRRL-LSRPQDVLEG---VVLSPS 323
Query: 366 LQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS 411
L+ R++ +A AT NTK ++ +R++L YGPPGTGKT+ A+++A S
Sbjct: 324 LEARVRDIAIATRNTKKNRGLYRHILLYGPPGTGKTLFAKKLALHS 369
>sp|Q3KRE0|ATAD3_RAT ATPase family AAA domain-containing protein 3 OS=Rattus norvegicus
GN=Atad3 PE=1 SV=1
Length = 591
Score = 152 bits (383), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 133/410 (32%), Positives = 198/410 (48%), Gaps = 74/410 (18%)
Query: 34 FSFFSSSPQPTSSGNDEAEQTADAQKSREPEEPRGSG-----------FDPEALERAAKA 82
S+ P G AQ E RG+G FDP LERAAKA
Sbjct: 1 MSWLFGIKGPKGEGTGPPLPLPPAQPGAESGGDRGAGDRPSPKDKWSNFDPTGLERAAKA 60
Query: 83 LREFNSSRHAREAFDIMRKQEQTRLAELDVEKVHYEAIQSQVDVERQRKLAEEHRNLVQQ 142
RE SRHA+EA ++ + QEQT E + YEA Q+ E+ R AEE R + +
Sbjct: 61 ARELEHSRHAKEALNLAQMQEQTLQLEQQSKLKEYEAAVEQLKSEQIRVQAEERRKTLNE 120
Query: 143 KA---QARAQGLRNEDELARKRLQTDHEAQRRHNTELVKMQEESSIRKEQARRSTEEQIQ 199
+ QARAQ +D+LAR+R + + Q+ N E ++ QEES ++E RR+T E+
Sbjct: 121 ETRQHQARAQ---YQDKLARQRYEDQLKQQQLLNEENLRKQEESVQKQEAIRRATVEREM 177
Query: 200 AQQRLTEKER---------------AEIERETIRVKAMAEAEGRAHEAKLTEDHNRRMLI 244
+ E R A+I RE IR+KA +H
Sbjct: 178 ELRHKNEMLRVEAEARARAKADRENADIIREQIRLKAA--------------EH------ 217
Query: 245 ERINGEREKWLAAINTTFSHIEEGVRSLLTDRNKLVMTVGGATALAAGIYTTREGARVTW 304
R+ L +I T + EG R+ +TD +K+ TV G T LA G+Y+ + V
Sbjct: 218 ------RQTILESIRTAGTLFGEGFRAFVTDWDKVTATVAGLTLLAVGVYSAKNATSVAG 271
Query: 305 GYVNRILGQPSLIRESSIGKFPWSGLLSQAMNKVIRNKTSAG---TAGPVEAIKNNGDII 361
Y+ LG+PSL+RE+S ++ + +R+ + P +A++ +I
Sbjct: 272 RYIEARLGKPSLVRETS----------RISVLEALRHPIQVSRRLVSRPQDALEG---VI 318
Query: 362 LHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS 411
L PSL+ R++ +A AT NTK +++ +RN+L YGPPGTGKT+ A+++A S
Sbjct: 319 LSPSLEARVRDIAIATRNTKKNKSLYRNVLMYGPPGTGKTLFAKKLALHS 368
>sp|Q925I1|ATAD3_MOUSE ATPase family AAA domain-containing protein 3 OS=Mus musculus
GN=Atad3 PE=1 SV=1
Length = 591
Score = 151 bits (381), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 120/349 (34%), Positives = 186/349 (53%), Gaps = 33/349 (9%)
Query: 69 SGFDPEALERAAKALREFNSSRHAREAFDIMRKQEQTRLAELDVEKVHYEAIQSQVDVER 128
S FDP LERAAKA RE SRHA+EA + + QEQT E + YEA Q+ E+
Sbjct: 47 SNFDPTGLERAAKAARELEHSRHAKEALSLAQMQEQTLQLEQQSKLKEYEAAVEQLKSEQ 106
Query: 129 QRKLAEEHRNLVQQKA---QARAQGLRNEDELARKRLQTDHEAQRRHNTELVKMQEESSI 185
R AEE R + ++ QARAQ +D+LAR+R + + Q+ N E ++ QEES
Sbjct: 107 IRVQAEERRKTLTEETRQHQARAQ---YQDKLARQRYEDQLKQQQLLNEENLRKQEESVQ 163
Query: 186 RKEQARRSTEEQIQAQQRLTEKERAEIERETIRVKAMAEAEGRAHEAKLTEDHNRRMLIE 245
++E RR+T E+ + E R E E A+ + +L +R+ ++E
Sbjct: 164 KQEAIRRATVEREMELRHKNEMLRVEAEARARAKADRENADIIREQIRLKAAEHRQTILE 223
Query: 246 RINGEREKWLAAINTTFSHIEEGVRSLLTDRNKLVMTVGGATALAAGIYTTREGARVTWG 305
+I T + + EG R+ +TD +K+ TV G T LA G+Y+ + V
Sbjct: 224 -----------SIRTAGTLLGEGFRAFVTDWDKVTATVAGLTLLAVGVYSAKNATSVAGR 272
Query: 306 YVNRILGQPSLIRESSIGKFPWSGLLSQAMNKVIRNKTSAG---TAGPVEAIKNNGDIIL 362
Y+ LG+PSL+RE+S ++ + +R+ + P +A++ +IL
Sbjct: 273 YIEARLGKPSLVRETS----------RISVLEALRHPIQVSRRLVSRPQDALEG---VIL 319
Query: 363 HPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS 411
PSL+ R++ +A AT NTK +++ +RN+L YGPPGTGKT+ A+++A S
Sbjct: 320 SPSLEARVRDIAIATRNTKKNKSLYRNVLMYGPPGTGKTLFAKKLALHS 368
>sp|Q9NVI7|ATD3A_HUMAN ATPase family AAA domain-containing protein 3A OS=Homo sapiens
GN=ATAD3A PE=1 SV=2
Length = 634
Score = 129 bits (323), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 119/405 (29%), Positives = 192/405 (47%), Gaps = 93/405 (22%)
Query: 67 RGSGFDPEALERAAKALREFNSSRHAREAFDI-----------------MR--------- 100
+ S FDP LERAAKA RE SR+A++A ++ MR
Sbjct: 46 KWSNFDPTGLERAAKAARELEHSRYAKDALNLAQMQEQTLQLEQQSKLKMRLEALSLLHT 105
Query: 101 ------------KQEQTRLA-------------------ELDVEKVHYEAIQSQVDVERQ 129
Q Q RL+ E VE++ E I++Q + ER+
Sbjct: 106 LVWAWSLCRAGAVQTQERLSGSASPEQVPAGECCALQEYEAAVEQLKSEQIRAQAE-ERR 164
Query: 130 RKLAEEHRNLVQQKAQARAQGLRNEDELARKRLQTDHEAQRRHNTELVKMQEESSIRKEQ 189
+ L+EE R + QARAQ +D+LAR+R + + Q+ N E ++ QEES ++E
Sbjct: 165 KTLSEETR-----QHQARAQ---YQDKLARQRYEDQLKQQQLLNEENLRKQEESVQKQEA 216
Query: 190 ARRSTEEQIQAQQRLTEKERAEIERETIRVKAMAEAEGRAHEAKLTEDHNRRMLIERING 249
RR+T E+ + E R E E A+ + +L +R+ ++E
Sbjct: 217 MRRATVEREMELRHKNEMLRVEAEARARAKAERENADIIREQIRLKAAEHRQTVLE---- 272
Query: 250 EREKWLAAINTTFSHIEEGVRSLLTDRNKLVMTVGGATALAAGIYTTREGARVTWGYVNR 309
+I T + EG R+ +TD +K+ TV G T LA G+Y+ + V ++
Sbjct: 273 -------SIRTAGTLFGEGFRAFVTDWDKVTATVAGLTLLAVGVYSAKNATLVAGRFIEA 325
Query: 310 ILGQPSLIRESSIGKFPWSGLLSQAMNKVIRNKTSAG---TAGPVEAIKNNGDIILHPSL 366
LG+PSL+RE+S + + +R+ + P +A++ ++L PSL
Sbjct: 326 RLGKPSLVRETS----------RITVLEALRHPIQVSRRLLSRPQDALEG---VVLSPSL 372
Query: 367 QRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS 411
+ R++ +A AT NTK +++ +RN+L YGPPGTGKT+ A+++A S
Sbjct: 373 EARVRDIAIATRNTKKNRSLYRNILMYGPPGTGKTLFAKKLALHS 417
>sp|Q5T2N8|ATD3C_HUMAN ATPase family AAA domain-containing protein 3C OS=Homo sapiens
GN=ATAD3C PE=2 SV=2
Length = 411
Score = 99.4 bits (246), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 95/167 (56%), Gaps = 9/167 (5%)
Query: 245 ERINGEREKWLAAINTTFSHIEEGVRSLLTDRNKLVMTVGGATALAAGIYTTREGARVTW 304
E + + +L +I + EG R+ +TDR+K+ TV G T LA G+Y+ + VT
Sbjct: 37 ESVQKHHQTFLESIRAAGTLFGEGFRAFVTDRDKVTATVAGLTLLAVGVYSAKNATAVTG 96
Query: 305 GYVNRILGQPSLIRESSIGKFPWSGLLSQAMNKVIRNKTSAGTAGPVEAIKNNGDIILHP 364
Y+ LG+PSL+RE+S + +A+ I+ + + P + ++ ++L P
Sbjct: 97 RYIEARLGKPSLVRETS------RITVLEALRHPIQQVSRRLLSRPQDVLEG---VVLSP 147
Query: 365 SLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS 411
SL+ R++ +A T N K ++ +R++L YGPPGTGKT+ A+++A S
Sbjct: 148 SLEARVRDIAIMTRNIKKNRGLYRHILLYGPPGTGKTLFAKKLALHS 194
>sp|Q8IDX6|RBP2A_PLAF7 Reticulocyte-binding protein 2 homolog a OS=Plasmodium falciparum
(isolate 3D7) GN=PF13_0198 PE=3 SV=1
Length = 3130
Score = 55.8 bits (133), Expect = 6e-07, Method: Composition-based stats.
Identities = 46/187 (24%), Positives = 96/187 (51%), Gaps = 20/187 (10%)
Query: 82 ALREFNSSRHAREAFDIMRKQEQTRLAELDVEKVHYEAIQSQVDVERQRKLAEEHRNLVQ 141
AL+ R +E + +++QEQ RL E+ E +Q + +++RQ + + ++
Sbjct: 2738 ALKRQEQERLQKE--EELKRQEQERL-----EREKQEQLQKEEELKRQEQERLQKEEALK 2790
Query: 142 QKAQARAQGLRNEDELARK---RLQTDHEAQRRHNTELVKMQEESSIRKEQA-RRSTEEQ 197
++ Q R L+ E+EL R+ RL+ + + Q + EL K QE+ ++KE+A +R +E+
Sbjct: 2791 RQEQER---LQKEEELKRQEQERLEREKQEQLQKEEEL-KRQEQERLQKEEALKRQEQER 2846
Query: 198 IQAQQRLTEKERAEIERETIRVKAMAEAEGRAHEAKLTEDHNRRMLIERINGEREKWLAA 257
+Q ++ L +E+ +ER+ I + AE H E +++ + + E+++ +
Sbjct: 2847 LQKEEELKRQEQERLERKKIEL-----AEREQHIKSKLESDMVKIIKDELTKEKDEIIKN 2901
Query: 258 INTTFSH 264
+ H
Sbjct: 2902 KDIKLRH 2908
>sp|A7GY23|RNY_CAMC5 Ribonuclease Y OS=Campylobacter curvus (strain 525.92) GN=rny PE=3
SV=2
Length = 517
Score = 37.0 bits (84), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 74/138 (53%), Gaps = 20/138 (14%)
Query: 130 RKLAEEHRNLVQQKAQARAQGLRNEDELARKR-----LQTDHEAQRRHNTELVKMQEESS 184
+K+ + + N+ ++A+A+A+ + E EL K + + EA++R++ + K+Q+E S
Sbjct: 23 KKINDANYNIFLEQAKAKAKAIEYEAELTLKNSKISVQEAEFEAKKRYDDKTTKLQKEYS 82
Query: 185 ------IRKEQARRSTEEQIQAQQRLTEKERAEIE---RETIRVKAMAEAEGRA------ 229
+KEQ + +E + + L EK+R E + E + +KA +++ +
Sbjct: 83 QKFDELNKKEQILLNEQELLNENKELFEKDRNEAKLTYEEGLNLKATYQSKVQEALKVLE 142
Query: 230 HEAKLTEDHNRRMLIERI 247
H A LTED R ++++++
Sbjct: 143 HAAGLTEDEAREVVLKKV 160
>sp|Q9DE13|BAZ2B_CHICK Bromodomain adjacent to zinc finger domain protein 2B OS=Gallus
gallus GN=BAZ2B PE=2 SV=1
Length = 2130
Score = 35.0 bits (79), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 91/183 (49%), Gaps = 21/183 (11%)
Query: 80 AKALREFNSSRHAREAFDI-----MRKQEQTRLAELDVEKVHYEAIQSQVDVERQRKLAE 134
AK LR+ + AR+A I ++KQEQ R A+ E +AI + E +RK E
Sbjct: 797 AKLLRKLQAQEIARQAAQIKLLRKLQKQEQARAAK---EAKKQQAIMA---AEEKRKQKE 850
Query: 135 EHRNLVQQKAQARAQGLRNEDELARKRLQTDHEAQRRHNTELVKMQEESSIRKEQARRST 194
+ + + QQ+ R Q +R E EL +++ + ++ ++ E I++++ RR
Sbjct: 851 QIKIMKQQEKIKRIQQIRMEKELRAQQILEAKKKKKEEAANAKLLEAEKRIKEKEMRRQQ 910
Query: 195 EEQIQAQQRLTEKERAEIERE-----TIRVKAMAEAEGRAHEAKLTEDHNRRMLIERING 249
++ Q+ E+ R ++ERE + +KAM EA +A E + + R +R+N
Sbjct: 911 AVLLKHQE--LERHRLDMERERRRQHMMLMKAM-EARKKAEEKERLKQEKRDE--KRLNK 965
Query: 250 ERE 252
ER+
Sbjct: 966 ERK 968
>sp|Q15149|PLEC_HUMAN Plectin OS=Homo sapiens GN=PLEC PE=1 SV=3
Length = 4684
Score = 34.3 bits (77), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 73/138 (52%), Gaps = 19/138 (13%)
Query: 98 IMRKQEQTRLAELD--VEKVHYEAIQSQVDVERQRKLAEEHRNLVQQKAQARAQGLRNED 155
+ R +E+ RLAE E+ +++ + E+QR+LAE H AQA+AQ R
Sbjct: 1478 LRRMEEEERLAEQQRAEERERLAEVEAAL--EKQRQLAEAH-------AQAKAQAEREAK 1528
Query: 156 ELARKRLQTDHEAQRRHNTELVKMQEESSIRKE--QARRSTEEQIQAQQR---LTEKERA 210
EL ++R+Q E RR + Q++ SI++E Q R+S+E +IQA+ R E+ R
Sbjct: 1529 EL-QQRMQ--EEVVRREEAAVDAQQQKRSIQEELQQLRQSSEAEIQAKARQAEAAERSRL 1585
Query: 211 EIERETIRVKAMAEAEGR 228
IE E V+ EA R
Sbjct: 1586 RIEEEIRVVRLQLEATER 1603
>sp|Q9JI55|PLEC_CRIGR Plectin (Fragment) OS=Cricetulus griseus GN=PLEC PE=1 SV=1
Length = 4473
Score = 33.9 bits (76), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 63/122 (51%), Gaps = 30/122 (24%)
Query: 128 RQRKLAEEHRNLVQQKAQARAQGLRNEDELARKRLQTDHEAQR-RHNTELVKMQEESSIR 186
R R+LAEE +L QQ+A A +++ ++++Q EA R + EL++ Q+E +
Sbjct: 2218 RLRQLAEE--DLAQQRALA--------EKMLKEKMQAVQEATRLKAEAELLQQQKE--LA 2265
Query: 187 KEQARRSTE----------EQIQAQQRLTEKER-------AEIERETIRVKAMAEAEGRA 229
+EQARR E E+ Q QR E ER AE ER +R+ M+ A+ RA
Sbjct: 2266 QEQARRLQEDKEQMAQQLVEETQGFQRTLEVERQRQLEMSAEAERLKLRMAEMSRAQARA 2325
Query: 230 HE 231
E
Sbjct: 2326 EE 2327
Score = 32.7 bits (73), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 65/127 (51%), Gaps = 16/127 (12%)
Query: 98 IMRKQEQTRLAELDVEKVHYEAIQSQVDVERQRKLAEEHRNLVQQKAQARAQGLRNEDEL 157
+ R +E+ RLAE + + + +E+QR+LAE H AQA+AQ EL
Sbjct: 1267 LRRMEEEERLAEQQRAEERERLAEGEAALEKQRQLAEAH-------AQAKAQAELEAQEL 1319
Query: 158 ARKRLQTDHEAQRRHNTELVKMQEESSIRKE--QARRSTEEQIQA---QQRLTEKERAEI 212
R R+Q E RR + Q++ SI++E R+S+E +IQA Q E+ R I
Sbjct: 1320 QR-RMQ--EEVARREEAAVNAQQQKRSIQEELQHLRQSSEAEIQAKAQQVEAAERSRMRI 1376
Query: 213 ERETIRV 219
E E IRV
Sbjct: 1377 EEE-IRV 1382
>sp|C0H5F4|RBP2B_PLAF7 Reticulocyte binding protein 2 homolog b OS=Plasmodium falciparum
(isolate 3D7) GN=Rh2b PE=3 SV=1
Length = 3179
Score = 33.5 bits (75), Expect = 3.2, Method: Composition-based stats.
Identities = 24/99 (24%), Positives = 53/99 (53%), Gaps = 2/99 (2%)
Query: 121 QSQVDVERQRKLAEEHRNLVQQKAQARAQGLRNEDELARKRLQTDHEAQRRHNTELVKMQ 180
+ +++ E+Q +L +E +Q+ Q + Q ++RLQ + E +R+ L + +
Sbjct: 2630 KERLEREKQEQLKKEALKKQEQERQEQQQKEEALKRQEQERLQKEEELKRQEQERLEREK 2689
Query: 181 EESSIRKEQARRSTEEQIQAQ--QRLTEKERAEIERETI 217
+E ++E+ R+ +E+ Q + Q L E+++ EI E +
Sbjct: 2690 QEQLQKEEELRKKEQEKQQQRNIQELEEQKKPEIINEAL 2728
>sp|Q9QXS1|PLEC_MOUSE Plectin OS=Mus musculus GN=Plec PE=1 SV=2
Length = 4691
Score = 33.1 bits (74), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 65/127 (51%), Gaps = 16/127 (12%)
Query: 98 IMRKQEQTRLAELDVEKVHYEAIQSQVDVERQRKLAEEHRNLVQQKAQARAQGLRNEDEL 157
+ R +E+ RLAE + + + +E+QR+LAE H AQA+AQ EL
Sbjct: 1486 LRRMEEEERLAEQQRAEERERLAEVEAALEKQRQLAEAH-------AQAKAQAELEAQEL 1538
Query: 158 ARKRLQTDHEAQRRHNTELVKMQEESSIRKE--QARRSTEEQIQA---QQRLTEKERAEI 212
R R+Q E RR + Q++ SI++E R+S+E +IQA Q E+ R I
Sbjct: 1539 QR-RMQ--EEVARREEAAVDAQQQKRSIQEELQHLRQSSEAEIQAKAQQVEAAERSRMRI 1595
Query: 213 ERETIRV 219
E E IRV
Sbjct: 1596 EEE-IRV 1601
>sp|Q9UIF8|BAZ2B_HUMAN Bromodomain adjacent to zinc finger domain protein 2B OS=Homo sapiens
GN=BAZ2B PE=1 SV=3
Length = 2168
Score = 32.7 bits (73), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 90/185 (48%), Gaps = 21/185 (11%)
Query: 74 EALERA-AKALREFNSSRHAREAFDI-----MRKQEQTRLAELDVEKVHYEAIQSQVDVE 127
E L+ A AK LR+ + AR+A I ++KQEQ R+A+ E +AI + E
Sbjct: 876 EFLDNADAKLLRKLQAQEIARQAAQIKLLRKLQKQEQARVAK---EAKKQQAIMA---AE 929
Query: 128 RQRKLAEEHRNLVQQKAQARAQGLRNEDELARKRLQTDHEAQRRHNTELVKMQEESSIRK 187
+RK E+ + + QQ+ R Q +R E EL +++ + ++ ++ E I++
Sbjct: 930 EKRKQKEQIKIMKQQEKIKRIQQIRMEKELRAQQILEAKKKKKEEAANAKLLEAEKRIKE 989
Query: 188 EQARRSTEEQIQAQQRLTEKERAEIERETIRVKAMAEAEGRAHEAKLTEDHNRRMLIERI 247
++ RR Q L +ER + + +KAM EA +A E + + R +R+
Sbjct: 990 KEMRR------QQAVLLKHQERERRRQHMMLMKAM-EARKKAEEKERLKQEKRDE--KRL 1040
Query: 248 NGERE 252
N ER+
Sbjct: 1041 NKERK 1045
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.125 0.344
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 138,154,180
Number of Sequences: 539616
Number of extensions: 5526845
Number of successful extensions: 47640
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 958
Number of HSP's successfully gapped in prelim test: 2573
Number of HSP's that attempted gapping in prelim test: 34723
Number of HSP's gapped (non-prelim): 9183
length of query: 415
length of database: 191,569,459
effective HSP length: 120
effective length of query: 295
effective length of database: 126,815,539
effective search space: 37410584005
effective search space used: 37410584005
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 62 (28.5 bits)