Query 014938
Match_columns 415
No_of_seqs 340 out of 1999
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 01:32:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014938.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014938hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0742 AAA+-type ATPase [Post 100.0 6E-100 1E-104 752.2 37.2 407 1-414 1-411 (630)
2 PF12037 DUF3523: Domain of un 100.0 1.7E-75 3.7E-80 559.6 28.1 259 60-318 18-276 (276)
3 KOG0742 AAA+-type ATPase [Post 100.0 5.7E-27 1.2E-31 233.5 27.8 263 6-295 1-273 (630)
4 PF12037 DUF3523: Domain of un 99.8 4.2E-19 9E-24 171.1 21.6 210 61-295 14-229 (276)
5 COG1222 RPT1 ATP-dependent 26S 99.5 5.4E-14 1.2E-18 139.6 6.4 135 255-413 65-211 (406)
6 KOG0727 26S proteasome regulat 99.3 1.1E-11 2.4E-16 118.3 13.4 144 255-412 69-214 (408)
7 COG1223 Predicted ATPase (AAA+ 99.3 2.4E-12 5.1E-17 123.3 5.3 64 351-414 114-178 (368)
8 KOG0728 26S proteasome regulat 99.3 1.9E-11 4E-16 116.7 10.8 136 255-413 61-207 (404)
9 KOG0726 26S proteasome regulat 99.2 2.8E-12 6E-17 124.5 1.0 142 251-412 95-244 (440)
10 PRK10865 protein disaggregatio 99.2 1.2E-09 2.5E-14 122.5 19.2 204 155-411 413-622 (857)
11 PTZ00454 26S protease regulato 99.1 3.4E-10 7.3E-15 116.6 12.1 64 351-414 138-206 (398)
12 PF05496 RuvB_N: Holliday junc 99.1 1.4E-10 3.1E-15 109.9 6.5 59 353-414 19-77 (233)
13 KOG0730 AAA+-type ATPase [Post 99.1 2E-10 4.3E-15 121.7 6.4 65 350-414 426-495 (693)
14 KOG0733 Nuclear AAA ATPase (VC 99.0 3.2E-10 6.9E-15 119.1 6.3 63 352-414 184-250 (802)
15 KOG0731 AAA+-type ATPase conta 99.0 3.5E-10 7.6E-15 122.6 6.2 64 351-414 304-371 (774)
16 KOG0733 Nuclear AAA ATPase (VC 99.0 6.2E-10 1.4E-14 116.9 5.8 64 351-414 504-572 (802)
17 KOG0743 AAA+-type ATPase [Post 99.0 6.4E-10 1.4E-14 113.9 5.5 65 350-414 193-262 (457)
18 PTZ00361 26 proteosome regulat 98.9 1.7E-09 3.6E-14 112.6 8.3 64 351-414 176-244 (438)
19 TIGR03346 chaperone_ClpB ATP-d 98.9 3.5E-08 7.5E-13 110.9 19.5 54 359-412 566-620 (852)
20 KOG0738 AAA+-type ATPase [Post 98.9 1.3E-09 2.8E-14 109.6 6.0 63 351-413 205-271 (491)
21 PRK03992 proteasome-activating 98.9 8E-09 1.7E-13 106.2 10.9 64 351-414 124-192 (389)
22 KOG0734 AAA+-type ATPase conta 98.9 2.3E-09 5.1E-14 111.2 5.8 62 353-414 299-364 (752)
23 TIGR01241 FtsH_fam ATP-depende 98.8 4.3E-09 9.4E-14 111.4 6.9 63 352-414 49-115 (495)
24 KOG0736 Peroxisome assembly fa 98.8 2.9E-09 6.4E-14 114.3 5.3 64 350-413 664-731 (953)
25 COG2255 RuvB Holliday junction 98.8 4.4E-09 9.6E-14 102.2 6.0 59 353-414 21-79 (332)
26 KOG0737 AAA+-type ATPase [Post 98.8 3.8E-09 8.2E-14 105.8 5.5 64 351-414 85-154 (386)
27 KOG0652 26S proteasome regulat 98.8 2.6E-08 5.7E-13 95.9 10.8 62 351-412 164-230 (424)
28 KOG0651 26S proteasome regulat 98.8 2.6E-09 5.6E-14 104.8 3.9 136 251-414 43-193 (388)
29 CHL00195 ycf46 Ycf46; Provisio 98.8 6.4E-09 1.4E-13 109.7 6.6 62 353-414 223-286 (489)
30 TIGR01242 26Sp45 26S proteasom 98.8 2.1E-08 4.5E-13 102.1 8.8 64 351-414 115-183 (364)
31 TIGR03689 pup_AAA proteasome A 98.7 1.2E-08 2.6E-13 107.9 6.4 63 352-414 176-243 (512)
32 CHL00176 ftsH cell division pr 98.7 1.5E-08 3.3E-13 110.0 7.0 63 352-414 177-243 (638)
33 KOG0729 26S proteasome regulat 98.7 1.3E-08 2.8E-13 98.3 5.4 63 351-413 170-237 (435)
34 TIGR03345 VI_ClpV1 type VI sec 98.7 2.5E-07 5.4E-12 103.8 16.6 52 360-411 568-620 (852)
35 TIGR00763 lon ATP-dependent pr 98.7 3.4E-07 7.3E-12 102.0 16.8 54 359-414 321-374 (775)
36 COG0464 SpoVK ATPases of the A 98.7 2E-08 4.4E-13 106.1 6.6 65 350-414 234-303 (494)
37 PRK00080 ruvB Holliday junctio 98.7 2.6E-08 5.5E-13 100.0 6.2 58 354-414 21-78 (328)
38 KOG0989 Replication factor C, 98.7 2.2E-08 4.9E-13 98.2 5.2 53 353-413 31-83 (346)
39 COG2256 MGS1 ATPase related to 98.6 1.3E-08 2.7E-13 103.1 2.9 58 352-414 18-75 (436)
40 KOG0739 AAA+-type ATPase [Post 98.6 3E-08 6.5E-13 97.1 4.7 64 349-412 124-191 (439)
41 TIGR02881 spore_V_K stage V sp 98.6 3.5E-08 7.7E-13 95.9 5.1 56 356-411 4-66 (261)
42 TIGR01243 CDC48 AAA family ATP 98.6 5.1E-08 1.1E-12 107.9 6.4 63 352-414 447-514 (733)
43 COG0542 clpA ATP-binding subun 98.6 2.2E-07 4.8E-12 101.8 11.1 53 360-412 493-546 (786)
44 PRK04195 replication factor C 98.6 6.4E-08 1.4E-12 102.2 6.3 58 353-414 9-66 (482)
45 KOG0744 AAA+-type ATPase [Post 98.5 5.8E-08 1.3E-12 96.0 4.3 60 354-413 138-203 (423)
46 PLN03025 replication factor C 98.5 6.7E-08 1.5E-12 96.7 4.9 51 353-411 8-58 (319)
47 PRK14962 DNA polymerase III su 98.5 9.1E-08 2E-12 100.7 6.0 54 353-413 9-62 (472)
48 COG0465 HflB ATP-dependent Zn 98.5 8.4E-08 1.8E-12 102.5 5.4 64 352-415 144-211 (596)
49 CHL00181 cbbX CbbX; Provisiona 98.5 1.2E-07 2.5E-12 93.9 5.9 53 359-411 24-83 (287)
50 KOG0735 AAA+-type ATPase [Post 98.4 3.2E-07 6.8E-12 98.4 7.1 60 354-413 663-727 (952)
51 PRK14961 DNA polymerase III su 98.4 2.7E-07 5.8E-12 94.1 6.1 54 353-413 11-64 (363)
52 TIGR01243 CDC48 AAA family ATP 98.4 2.9E-07 6.3E-12 102.0 6.1 62 353-414 173-239 (733)
53 PRK06620 hypothetical protein; 98.4 4.5E-07 9.6E-12 86.0 6.4 61 351-413 9-70 (214)
54 PLN00020 ribulose bisphosphate 98.4 5E-07 1.1E-11 91.6 6.6 32 383-414 144-175 (413)
55 PRK12402 replication factor C 98.4 3.2E-07 7E-12 91.4 5.1 51 354-412 11-61 (337)
56 TIGR02880 cbbX_cfxQ probable R 98.4 4.7E-07 1E-11 89.4 6.0 53 359-411 23-82 (284)
57 PRK14955 DNA polymerase III su 98.4 4.6E-07 1E-11 93.4 6.2 54 353-413 11-64 (397)
58 PRK14956 DNA polymerase III su 98.4 4.1E-07 8.8E-12 95.4 5.6 54 353-413 13-66 (484)
59 PRK14958 DNA polymerase III su 98.4 4.5E-07 9.7E-12 96.4 6.0 55 353-414 11-65 (509)
60 PRK06893 DNA replication initi 98.3 7.6E-07 1.7E-11 85.0 6.6 55 351-411 9-63 (229)
61 PRK14964 DNA polymerase III su 98.3 5.3E-07 1.2E-11 95.1 5.7 54 353-413 8-61 (491)
62 PRK13342 recombination factor 98.3 3.6E-07 7.7E-12 94.7 4.1 53 354-414 8-63 (413)
63 PRK14960 DNA polymerase III su 98.3 6E-07 1.3E-11 97.0 5.8 54 353-413 10-63 (702)
64 PRK06526 transposase; Provisio 98.3 3.8E-07 8.2E-12 88.7 3.5 25 387-411 98-122 (254)
65 PRK14949 DNA polymerase III su 98.3 7.3E-07 1.6E-11 99.0 5.9 55 353-414 11-65 (944)
66 PRK06645 DNA polymerase III su 98.3 8.1E-07 1.8E-11 94.3 5.8 55 352-413 15-69 (507)
67 PRK08084 DNA replication initi 98.3 1.2E-06 2.6E-11 84.1 6.5 56 351-412 15-70 (235)
68 PRK08181 transposase; Validate 98.3 6.2E-07 1.3E-11 87.9 4.4 25 387-411 106-130 (269)
69 PRK14963 DNA polymerase III su 98.3 7.4E-07 1.6E-11 94.6 5.3 54 353-413 9-62 (504)
70 PHA02544 44 clamp loader, smal 98.3 1E-06 2.2E-11 87.5 5.8 55 353-414 16-70 (316)
71 KOG2004 Mitochondrial ATP-depe 98.3 2E-05 4.4E-10 84.9 15.7 50 362-413 415-464 (906)
72 PRK14969 DNA polymerase III su 98.3 1.1E-06 2.3E-11 94.0 5.8 54 354-414 12-65 (527)
73 PRK10787 DNA-binding ATP-depen 98.3 1.8E-05 4E-10 88.2 15.7 53 360-414 324-376 (784)
74 PRK08691 DNA polymerase III su 98.3 1E-06 2.2E-11 95.9 5.5 55 353-414 11-65 (709)
75 PRK14957 DNA polymerase III su 98.2 1.2E-06 2.6E-11 93.7 6.0 54 353-413 11-64 (546)
76 COG0466 Lon ATP-dependent Lon 98.2 4.5E-05 9.7E-10 82.5 17.3 50 363-414 328-377 (782)
77 COG0606 Predicted ATPase with 98.2 7E-07 1.5E-11 92.5 3.7 46 354-409 175-220 (490)
78 PRK08903 DnaA regulatory inact 98.2 1.9E-06 4.2E-11 81.6 6.2 56 351-411 11-66 (227)
79 PRK14952 DNA polymerase III su 98.2 1.4E-06 3.1E-11 93.8 5.8 54 353-413 8-61 (584)
80 CHL00095 clpC Clp protease ATP 98.2 7.9E-06 1.7E-10 91.7 12.0 53 359-411 510-563 (821)
81 PRK14970 DNA polymerase III su 98.2 1.7E-06 3.7E-11 88.0 6.0 54 353-413 12-65 (367)
82 KOG0740 AAA+-type ATPase [Post 98.2 1.2E-06 2.7E-11 90.3 4.8 63 351-413 146-212 (428)
83 TIGR00390 hslU ATP-dependent p 98.2 2E-06 4.4E-11 88.7 6.2 55 360-414 14-74 (441)
84 KOG0991 Replication factor C, 98.2 1.1E-06 2.4E-11 83.7 3.8 51 354-412 23-73 (333)
85 CHL00206 ycf2 Ycf2; Provisiona 98.2 9.4E-07 2E-11 103.4 4.1 31 384-414 1627-1657(2281)
86 TIGR02397 dnaX_nterm DNA polym 98.2 2.1E-06 4.6E-11 86.3 6.2 54 353-413 9-62 (355)
87 PRK07940 DNA polymerase III su 98.2 1.9E-06 4.1E-11 88.9 5.9 60 355-414 2-63 (394)
88 PRK14954 DNA polymerase III su 98.2 1.5E-06 3.3E-11 94.2 5.3 54 353-413 11-64 (620)
89 PRK05896 DNA polymerase III su 98.2 2E-06 4.2E-11 92.6 6.1 54 353-413 11-64 (605)
90 PRK12323 DNA polymerase III su 98.2 1.5E-06 3.3E-11 93.8 5.2 54 353-413 11-64 (700)
91 PRK05563 DNA polymerase III su 98.2 1.9E-06 4.2E-11 92.6 6.0 54 353-413 11-64 (559)
92 PRK14951 DNA polymerase III su 98.2 1.5E-06 3.3E-11 94.0 5.1 53 354-413 12-64 (618)
93 PRK13341 recombination factor 98.2 1.7E-06 3.7E-11 95.4 5.5 56 353-413 23-78 (725)
94 KOG2028 ATPase related to the 98.2 1.2E-06 2.6E-11 88.0 3.8 61 349-414 129-189 (554)
95 KOG0741 AAA+-type ATPase [Post 98.2 1E-06 2.2E-11 91.9 3.4 32 382-413 251-282 (744)
96 PRK08116 hypothetical protein; 98.2 3.3E-06 7.1E-11 82.8 6.7 58 354-411 81-138 (268)
97 PRK05342 clpX ATP-dependent pr 98.2 4E-06 8.6E-11 87.0 7.6 55 360-414 73-135 (412)
98 PRK06305 DNA polymerase III su 98.2 2.4E-06 5.1E-11 89.7 6.0 53 354-413 13-65 (451)
99 PRK07003 DNA polymerase III su 98.2 2E-06 4.4E-11 94.1 5.6 54 353-413 11-64 (830)
100 TIGR03420 DnaA_homol_Hda DnaA 98.2 3.1E-06 6.8E-11 79.5 6.2 55 352-412 9-63 (226)
101 PRK14965 DNA polymerase III su 98.1 2.7E-06 5.8E-11 91.9 6.0 55 353-414 11-65 (576)
102 PRK14950 DNA polymerase III su 98.1 2.3E-06 5E-11 92.6 5.5 54 353-413 11-64 (585)
103 PRK09111 DNA polymerase III su 98.1 2.6E-06 5.7E-11 92.1 5.9 54 353-413 19-72 (598)
104 PRK07133 DNA polymerase III su 98.1 2.4E-06 5.2E-11 93.6 5.6 54 353-413 13-66 (725)
105 PRK07994 DNA polymerase III su 98.1 2.5E-06 5.4E-11 92.7 5.6 54 353-413 11-64 (647)
106 PRK14959 DNA polymerase III su 98.1 2.4E-06 5.2E-11 92.3 4.9 54 353-413 11-64 (624)
107 PRK12377 putative replication 98.1 4.9E-06 1.1E-10 80.7 6.6 25 387-411 101-125 (248)
108 PRK06647 DNA polymerase III su 98.1 3.1E-06 6.7E-11 91.0 5.7 54 353-413 11-64 (563)
109 COG1484 DnaC DNA replication p 98.1 4E-06 8.7E-11 81.6 6.0 48 360-411 81-129 (254)
110 PRK14088 dnaA chromosomal repl 98.1 4.4E-06 9.6E-11 87.4 6.6 57 351-411 98-154 (440)
111 PRK00440 rfc replication facto 98.1 2.9E-06 6.4E-11 83.7 5.0 51 354-412 13-63 (319)
112 PRK11034 clpA ATP-dependent Cl 98.1 4.3E-06 9.4E-11 92.7 6.6 56 359-414 459-515 (758)
113 PRK00149 dnaA chromosomal repl 98.1 4.8E-06 1E-10 87.3 6.3 58 351-411 115-172 (450)
114 PRK09183 transposase/IS protei 98.1 2.7E-06 5.9E-11 82.9 4.1 25 387-411 102-126 (259)
115 PRK07764 DNA polymerase III su 98.1 4E-06 8.8E-11 93.6 5.8 54 353-413 10-63 (824)
116 KOG0732 AAA+-type ATPase conta 98.1 3.9E-06 8.5E-11 94.1 5.6 60 352-411 259-323 (1080)
117 TIGR02639 ClpA ATP-dependent C 98.1 5.9E-06 1.3E-10 91.6 6.9 56 359-414 455-511 (731)
118 PRK14948 DNA polymerase III su 98.1 4.2E-06 9E-11 91.0 5.5 54 353-413 11-64 (620)
119 PRK12422 chromosomal replicati 98.0 6.2E-06 1.3E-10 86.4 6.2 61 351-411 104-165 (445)
120 TIGR00362 DnaA chromosomal rep 98.0 7.5E-06 1.6E-10 84.5 6.6 58 351-411 103-160 (405)
121 PRK05642 DNA replication initi 98.0 8.6E-06 1.9E-10 78.1 6.5 58 351-411 12-69 (234)
122 PRK08939 primosomal protein Dn 98.0 7.2E-06 1.6E-10 81.9 6.1 26 386-411 155-180 (306)
123 smart00763 AAA_PrkA PrkA AAA d 98.0 8E-06 1.7E-10 82.9 6.4 57 355-413 47-104 (361)
124 PRK14953 DNA polymerase III su 98.0 5.8E-06 1.3E-10 87.5 5.7 54 353-413 11-64 (486)
125 PRK10733 hflB ATP-dependent me 98.0 5.7E-06 1.2E-10 90.5 5.8 63 352-414 146-212 (644)
126 PRK08727 hypothetical protein; 98.0 8.2E-06 1.8E-10 78.2 5.9 54 351-411 12-65 (233)
127 COG1219 ClpX ATP-dependent pro 98.0 5.5E-06 1.2E-10 82.1 4.7 100 292-414 18-124 (408)
128 PRK08451 DNA polymerase III su 98.0 7.2E-06 1.6E-10 87.4 6.0 54 353-413 9-62 (535)
129 KOG1051 Chaperone HSP104 and r 98.0 6.5E-06 1.4E-10 91.6 5.7 152 197-411 461-615 (898)
130 PRK05201 hslU ATP-dependent pr 98.0 9.7E-06 2.1E-10 83.8 6.5 55 360-414 17-77 (443)
131 TIGR00382 clpX endopeptidase C 98.0 9.2E-06 2E-10 84.2 6.2 55 360-414 79-143 (413)
132 PRK07952 DNA replication prote 98.0 1.1E-05 2.4E-10 78.0 6.1 55 354-411 68-123 (244)
133 TIGR02902 spore_lonB ATP-depen 98.0 2.4E-06 5.2E-11 91.4 1.3 52 352-411 59-110 (531)
134 PF01695 IstB_IS21: IstB-like 98.0 7.1E-06 1.5E-10 75.6 4.1 25 387-411 47-71 (178)
135 PHA02244 ATPase-like protein 97.9 1.6E-05 3.6E-10 80.9 6.9 28 387-414 119-146 (383)
136 PF00308 Bac_DnaA: Bacterial d 97.9 1.4E-05 3E-10 76.0 6.1 56 353-411 3-58 (219)
137 COG1224 TIP49 DNA helicase TIP 97.9 1.6E-05 3.5E-10 79.8 5.9 57 355-414 36-92 (450)
138 PRK06835 DNA replication prote 97.9 2E-05 4.3E-10 79.5 5.9 25 387-411 183-207 (329)
139 PRK09087 hypothetical protein; 97.9 2.1E-05 4.6E-10 75.2 5.8 56 351-412 14-69 (226)
140 PF06068 TIP49: TIP49 C-termin 97.9 2.1E-05 4.6E-10 79.7 5.9 57 354-413 20-76 (398)
141 TIGR02639 ClpA ATP-dependent C 97.9 1.7E-05 3.7E-10 88.0 5.6 50 354-411 178-227 (731)
142 PRK06921 hypothetical protein; 97.8 2E-05 4.2E-10 77.3 5.4 25 387-411 117-141 (266)
143 PF03215 Rad17: Rad17 cell cyc 97.8 2.1E-05 4.6E-10 83.8 5.7 58 354-414 15-72 (519)
144 PRK14971 DNA polymerase III su 97.8 2.6E-05 5.6E-10 84.9 6.1 53 354-413 13-65 (614)
145 PRK13531 regulatory ATPase Rav 97.8 1.9E-05 4.1E-10 83.1 4.5 43 360-412 22-64 (498)
146 PF05673 DUF815: Protein of un 97.8 3.5E-05 7.5E-10 74.3 6.0 58 351-412 20-77 (249)
147 PRK11331 5-methylcytosine-spec 97.8 3.4E-05 7.4E-10 80.5 5.8 47 357-413 174-220 (459)
148 TIGR01650 PD_CobS cobaltochela 97.8 3.8E-05 8.3E-10 77.1 5.8 28 387-414 64-91 (327)
149 PF06309 Torsin: Torsin; Inte 97.8 5.1E-05 1.1E-09 66.1 5.7 48 360-411 27-77 (127)
150 PRK14087 dnaA chromosomal repl 97.7 4.6E-05 1E-09 80.0 6.0 55 354-411 111-165 (450)
151 PRK14086 dnaA chromosomal repl 97.7 4.5E-05 9.8E-10 82.3 6.0 58 351-411 281-338 (617)
152 PRK07471 DNA polymerase III su 97.7 5.5E-05 1.2E-09 77.4 6.3 54 353-413 14-67 (365)
153 TIGR00764 lon_rel lon-related 97.7 4E-05 8.7E-10 83.3 5.3 51 353-413 13-63 (608)
154 TIGR02928 orc1/cdc6 family rep 97.7 8.6E-05 1.9E-09 75.0 7.3 52 356-411 13-64 (365)
155 PRK10865 protein disaggregatio 97.7 5E-05 1.1E-09 85.6 5.7 50 354-411 174-223 (857)
156 TIGR00602 rad24 checkpoint pro 97.7 4.2E-05 9.2E-10 83.2 4.7 60 352-414 78-137 (637)
157 CHL00095 clpC Clp protease ATP 97.6 5.7E-05 1.2E-09 84.9 5.5 50 354-411 175-224 (821)
158 CHL00081 chlI Mg-protoporyphyr 97.6 5E-05 1.1E-09 77.1 4.1 52 352-411 11-62 (350)
159 TIGR02903 spore_lon_C ATP-depe 97.6 5.5E-05 1.2E-09 82.4 4.7 50 354-411 150-199 (615)
160 KOG0730 AAA+-type ATPase [Post 97.6 7.2E-05 1.6E-09 80.2 5.3 31 382-412 213-243 (693)
161 PRK09112 DNA polymerase III su 97.6 8E-05 1.7E-09 75.8 5.4 54 353-413 18-71 (351)
162 PRK13765 ATP-dependent proteas 97.6 7.6E-05 1.7E-09 81.3 5.4 51 352-412 25-75 (637)
163 PRK00411 cdc6 cell division co 97.6 0.00014 2.9E-09 74.4 7.0 52 356-411 28-79 (394)
164 PRK15455 PrkA family serine pr 97.6 9.6E-05 2.1E-09 79.1 5.8 55 355-412 73-128 (644)
165 COG0714 MoxR-like ATPases [Gen 97.6 0.0001 2.3E-09 74.0 5.7 28 387-414 43-70 (329)
166 TIGR03345 VI_ClpV1 type VI sec 97.5 9.1E-05 2E-09 83.5 5.5 50 354-411 183-232 (852)
167 COG0593 DnaA ATPase involved i 97.5 0.00012 2.6E-09 75.6 5.7 59 350-411 79-137 (408)
168 TIGR03346 chaperone_ClpB ATP-d 97.5 0.00011 2.4E-09 82.9 5.7 50 354-411 169-218 (852)
169 COG1220 HslU ATP-dependent pro 97.5 0.00021 4.6E-09 71.6 6.6 55 360-414 17-77 (444)
170 KOG1942 DNA helicase, TBP-inte 97.5 0.00017 3.6E-09 71.1 5.5 55 356-413 36-90 (456)
171 KOG0990 Replication factor C, 97.4 7.3E-05 1.6E-09 74.2 2.2 58 347-412 30-87 (360)
172 PRK08154 anaerobic benzoate ca 97.4 0.00038 8.2E-09 69.6 6.8 51 364-414 110-160 (309)
173 PRK11034 clpA ATP-dependent Cl 97.3 0.00032 6.8E-09 78.1 5.6 50 354-411 182-231 (758)
174 COG2812 DnaX DNA polymerase II 97.3 0.00017 3.6E-09 76.5 3.3 55 353-414 11-65 (515)
175 PLN02200 adenylate kinase fami 97.3 0.00024 5.2E-09 68.3 3.8 28 387-414 43-70 (234)
176 PTZ00121 MAEBL; Provisional 97.2 0.089 1.9E-06 61.0 23.5 33 178-210 1613-1647(2084)
177 TIGR00150 HI0065_YjeE ATPase, 97.2 0.00074 1.6E-08 59.5 5.8 29 386-414 21-49 (133)
178 TIGR02688 conserved hypothetic 97.2 0.00062 1.3E-08 70.6 6.0 24 387-410 209-232 (449)
179 TIGR00368 Mg chelatase-related 97.2 0.00021 4.6E-09 75.9 2.6 46 355-410 189-234 (499)
180 KOG1969 DNA replication checkp 97.1 0.0004 8.6E-09 75.4 4.3 62 353-414 266-353 (877)
181 COG1474 CDC6 Cdc6-related prot 97.1 0.0012 2.6E-08 67.7 7.2 43 369-412 25-67 (366)
182 TIGR03015 pepcterm_ATPase puta 97.1 0.0013 2.8E-08 63.4 6.9 25 388-412 44-68 (269)
183 PHA02624 large T antigen; Prov 97.1 0.00068 1.5E-08 72.9 5.2 26 387-412 431-456 (647)
184 PHA02774 E1; Provisional 97.0 0.00088 1.9E-08 71.8 5.4 28 385-412 431-459 (613)
185 KOG0745 Putative ATP-dependent 97.0 0.00051 1.1E-08 70.8 3.4 28 387-414 226-253 (564)
186 PF13245 AAA_19: Part of AAA d 97.0 0.00072 1.6E-08 53.7 3.5 23 389-411 12-35 (76)
187 KOG1970 Checkpoint RAD17-RFC c 97.0 0.00089 1.9E-08 70.8 5.1 58 355-413 79-136 (634)
188 COG1855 ATPase (PilT family) [ 97.0 0.00089 1.9E-08 69.4 4.9 45 354-411 243-287 (604)
189 cd02019 NK Nucleoside/nucleoti 96.8 0.0011 2.4E-08 51.4 3.4 22 390-411 2-23 (69)
190 TIGR01817 nifA Nif-specific re 96.7 0.0027 5.9E-08 68.0 6.4 55 352-412 190-244 (534)
191 PTZ00112 origin recognition co 96.6 0.0032 6.9E-08 70.4 6.0 24 388-411 781-805 (1164)
192 PF14532 Sigma54_activ_2: Sigm 96.6 0.0026 5.6E-08 55.7 4.2 26 387-412 21-46 (138)
193 COG2607 Predicted ATPase (AAA+ 96.6 0.0042 9.2E-08 59.9 5.8 60 349-412 51-110 (287)
194 PRK15429 formate hydrogenlyase 96.6 0.0032 6.9E-08 69.6 5.8 53 354-412 372-424 (686)
195 PLN02199 shikimate kinase 96.5 0.0023 5.1E-08 63.6 4.0 28 387-414 102-129 (303)
196 PRK10536 hypothetical protein; 96.5 0.0038 8.2E-08 61.0 5.2 23 388-410 75-97 (262)
197 PF05621 TniB: Bacterial TniB 96.5 0.006 1.3E-07 60.7 6.4 52 359-412 35-86 (302)
198 PRK13764 ATPase; Provisional 96.4 0.0032 7E-08 68.3 4.8 26 387-412 257-282 (602)
199 PTZ00202 tuzin; Provisional 96.4 0.0083 1.8E-07 62.8 7.5 55 354-413 258-312 (550)
200 PF12775 AAA_7: P-loop contain 96.4 0.0053 1.1E-07 60.4 5.5 23 387-409 33-55 (272)
201 PRK14722 flhF flagellar biosyn 96.4 0.0037 8.1E-08 64.2 4.6 25 387-411 137-161 (374)
202 PRK09270 nucleoside triphospha 96.4 0.0075 1.6E-07 57.4 6.3 28 385-412 31-58 (229)
203 TIGR03499 FlhF flagellar biosy 96.3 0.0039 8.5E-08 61.5 4.4 25 387-411 194-218 (282)
204 PF02367 UPF0079: Uncharacteri 96.3 0.0034 7.3E-08 54.6 3.3 28 387-414 15-42 (123)
205 PF00437 T2SE: Type II/IV secr 96.3 0.0039 8.5E-08 60.6 4.1 54 353-412 99-152 (270)
206 smart00350 MCM minichromosome 96.2 0.0043 9.3E-08 66.3 4.2 23 389-411 238-260 (509)
207 PRK04220 2-phosphoglycerate ki 96.2 0.004 8.7E-08 62.1 3.7 27 388-414 93-119 (301)
208 PRK10820 DNA-binding transcrip 96.2 0.007 1.5E-07 64.8 5.7 52 353-411 199-251 (520)
209 TIGR00376 DNA helicase, putati 96.2 0.0059 1.3E-07 67.0 5.2 24 388-411 174-197 (637)
210 PRK09862 putative ATP-dependen 96.2 0.0024 5.2E-08 68.0 2.1 47 355-411 188-234 (506)
211 PRK08099 bifunctional DNA-bind 96.2 0.0043 9.3E-08 64.3 3.8 28 387-414 219-246 (399)
212 KOG2035 Replication factor C, 96.2 0.0041 9E-08 61.1 3.4 50 354-411 9-58 (351)
213 TIGR02782 TrbB_P P-type conjug 96.2 0.0059 1.3E-07 60.9 4.6 25 387-411 132-156 (299)
214 PLN02165 adenylate isopentenyl 96.2 0.005 1.1E-07 62.2 4.1 27 386-412 42-68 (334)
215 PF03969 AFG1_ATPase: AFG1-lik 96.1 0.0064 1.4E-07 62.3 4.7 29 384-412 59-87 (362)
216 PRK15424 propionate catabolism 96.1 0.0075 1.6E-07 64.8 5.4 50 355-410 216-265 (538)
217 KOG0741 AAA+-type ATPase [Post 96.1 0.0096 2.1E-07 63.0 5.7 30 385-414 536-565 (744)
218 KOG0735 AAA+-type ATPase [Post 96.0 0.005 1.1E-07 67.0 3.6 28 387-414 431-458 (952)
219 PRK00771 signal recognition pa 96.0 0.0068 1.5E-07 63.5 4.4 26 386-411 94-119 (437)
220 TIGR02329 propionate_PrpR prop 96.0 0.01 2.2E-07 63.7 5.8 52 354-411 208-259 (526)
221 TIGR02524 dot_icm_DotB Dot/Icm 96.0 0.0099 2.1E-07 60.8 5.3 25 387-411 134-158 (358)
222 PRK11388 DNA-binding transcrip 95.9 0.012 2.6E-07 64.5 6.1 51 355-412 322-373 (638)
223 TIGR01526 nadR_NMN_Atrans nico 95.9 0.007 1.5E-07 61.0 3.8 28 387-414 162-189 (325)
224 PRK04132 replication factor C 95.9 0.0047 1E-07 69.4 2.7 43 353-403 14-56 (846)
225 KOG0736 Peroxisome assembly fa 95.9 0.0062 1.3E-07 66.8 3.5 28 387-414 431-458 (953)
226 cd01129 PulE-GspE PulE/GspE Th 95.9 0.01 2.2E-07 58.1 4.6 49 355-412 57-105 (264)
227 PRK05022 anaerobic nitric oxid 95.8 0.014 3.1E-07 62.3 6.0 51 356-412 185-235 (509)
228 PRK12337 2-phosphoglycerate ki 95.8 0.0078 1.7E-07 63.2 3.8 29 386-414 254-282 (475)
229 KOG2170 ATPase of the AAA+ sup 95.8 0.014 3.1E-07 57.9 5.4 51 360-411 84-134 (344)
230 TIGR03878 thermo_KaiC_2 KaiC d 95.8 0.0079 1.7E-07 58.6 3.5 24 387-410 36-59 (259)
231 TIGR00064 ftsY signal recognit 95.8 0.013 2.8E-07 57.7 4.9 26 386-411 71-96 (272)
232 PRK13851 type IV secretion sys 95.7 0.0076 1.7E-07 61.3 3.2 27 386-412 161-187 (344)
233 KOG1029 Endocytic adaptor prot 95.7 0.61 1.3E-05 51.4 17.4 17 101-117 313-329 (1118)
234 TIGR01420 pilT_fam pilus retra 95.7 0.015 3.1E-07 59.1 5.1 26 387-412 122-147 (343)
235 PRK13833 conjugal transfer pro 95.7 0.015 3.2E-07 58.7 5.0 25 387-411 144-168 (323)
236 PF08298 AAA_PrkA: PrkA AAA do 95.6 0.024 5.3E-07 57.6 6.4 53 356-411 58-112 (358)
237 COG3854 SpoIIIAA ncharacterize 95.6 0.0094 2E-07 57.3 3.2 26 387-412 137-162 (308)
238 PRK10646 ADP-binding protein; 95.6 0.027 5.9E-07 50.8 6.0 28 387-414 28-55 (153)
239 PF12774 AAA_6: Hydrolytic ATP 95.6 0.019 4.1E-07 55.3 5.2 27 388-414 33-59 (231)
240 TIGR02236 recomb_radA DNA repa 95.6 0.011 2.3E-07 58.9 3.6 25 388-412 96-120 (310)
241 cd00820 PEPCK_HprK Phosphoenol 95.6 0.011 2.3E-07 50.3 3.0 22 387-408 15-36 (107)
242 PRK13477 bifunctional pantoate 95.5 0.011 2.4E-07 63.2 3.7 28 387-414 284-311 (512)
243 PRK11889 flhF flagellar biosyn 95.5 0.022 4.8E-07 59.0 5.7 25 387-411 241-265 (436)
244 TIGR02858 spore_III_AA stage I 95.5 0.0097 2.1E-07 58.5 3.0 26 387-412 111-136 (270)
245 PRK13894 conjugal transfer ATP 95.5 0.012 2.5E-07 59.4 3.6 25 387-411 148-172 (319)
246 PRK13900 type IV secretion sys 95.5 0.018 3.9E-07 58.3 4.9 26 387-412 160-185 (332)
247 PRK12723 flagellar biosynthesi 95.4 0.013 2.8E-07 60.5 3.5 26 387-412 174-199 (388)
248 PRK10416 signal recognition pa 95.4 0.014 3.1E-07 58.7 3.7 26 386-411 113-138 (318)
249 COG1221 PspF Transcriptional r 95.3 0.017 3.6E-07 59.8 4.2 52 352-410 72-124 (403)
250 PF00519 PPV_E1_C: Papillomavi 95.3 0.032 6.9E-07 57.4 6.0 29 384-412 258-287 (432)
251 PRK05703 flhF flagellar biosyn 95.3 0.014 3.1E-07 60.9 3.6 25 387-411 221-245 (424)
252 TIGR02525 plasmid_TraJ plasmid 95.3 0.025 5.4E-07 58.2 5.2 25 388-412 150-174 (372)
253 PLN03210 Resistant to P. syrin 95.3 0.022 4.8E-07 66.6 5.3 52 354-411 180-231 (1153)
254 PRK06995 flhF flagellar biosyn 95.2 0.024 5.2E-07 60.2 5.0 24 388-411 257-280 (484)
255 COG2074 2-phosphoglycerate kin 95.2 0.036 7.9E-07 53.9 5.8 29 387-415 89-117 (299)
256 PRK05973 replicative DNA helic 95.2 0.017 3.8E-07 55.7 3.7 25 386-410 63-87 (237)
257 KOG1029 Endocytic adaptor prot 95.2 2.4 5.2E-05 47.0 19.7 15 147-161 367-381 (1118)
258 TIGR02012 tigrfam_recA protein 95.1 0.018 3.8E-07 58.1 3.6 24 387-410 55-78 (321)
259 PLN03187 meiotic recombination 95.1 0.016 3.4E-07 59.0 3.1 24 389-412 128-151 (344)
260 cd01878 HflX HflX subfamily. 95.1 0.039 8.5E-07 50.9 5.5 25 386-410 40-64 (204)
261 PRK12608 transcription termina 95.1 0.02 4.3E-07 58.8 3.7 25 387-411 133-157 (380)
262 PF13481 AAA_25: AAA domain; P 95.1 0.018 4E-07 52.5 3.2 25 387-411 32-56 (193)
263 PRK05439 pantothenate kinase; 95.0 0.045 9.8E-07 54.9 6.1 25 388-412 87-111 (311)
264 PRK09376 rho transcription ter 95.0 0.017 3.6E-07 59.7 3.1 26 387-412 169-194 (416)
265 TIGR02788 VirB11 P-type DNA tr 95.0 0.017 3.6E-07 57.7 3.0 26 386-411 143-168 (308)
266 TIGR01663 PNK-3'Pase polynucle 95.0 0.021 4.6E-07 61.2 3.8 28 386-413 368-395 (526)
267 PRK04301 radA DNA repair and r 95.0 0.021 4.5E-07 57.2 3.5 24 388-411 103-126 (317)
268 PRK10247 putative ABC transpor 95.0 0.022 4.8E-07 53.9 3.5 26 386-411 32-57 (225)
269 PRK14974 cell division protein 94.9 0.022 4.8E-07 57.8 3.6 25 387-411 140-164 (336)
270 TIGR02533 type_II_gspE general 94.9 0.032 7E-07 59.3 4.8 50 354-412 218-267 (486)
271 PRK05537 bifunctional sulfate 94.9 0.03 6.5E-07 60.7 4.6 27 387-413 392-418 (568)
272 cd00983 recA RecA is a bacter 94.8 0.025 5.4E-07 57.1 3.7 23 388-410 56-78 (325)
273 PRK12726 flagellar biosynthesi 94.8 0.024 5.2E-07 58.4 3.6 26 386-411 205-230 (407)
274 cd03221 ABCF_EF-3 ABCF_EF-3 E 94.8 0.022 4.9E-07 50.3 3.0 26 386-411 25-50 (144)
275 TIGR00750 lao LAO/AO transport 94.8 0.026 5.6E-07 56.2 3.7 27 385-411 32-58 (300)
276 cd03234 ABCG_White The White s 94.8 0.023 5E-07 53.7 3.2 27 386-412 32-58 (226)
277 TIGR01425 SRP54_euk signal rec 94.6 0.029 6.3E-07 58.6 3.7 26 386-411 99-124 (429)
278 cd03213 ABCG_EPDR ABCG transpo 94.6 0.027 5.9E-07 52.1 3.1 26 386-411 34-59 (194)
279 KOG1803 DNA helicase [Replicat 94.6 0.016 3.5E-07 62.0 1.7 20 388-407 202-221 (649)
280 PRK10584 putative ABC transpor 94.6 0.03 6.4E-07 52.9 3.4 26 386-411 35-60 (228)
281 PRK10867 signal recognition pa 94.6 0.031 6.6E-07 58.6 3.7 26 386-411 99-124 (433)
282 PTZ00035 Rad51 protein; Provis 94.6 0.033 7.1E-07 56.5 3.8 26 388-413 119-144 (337)
283 COG1117 PstB ABC-type phosphat 94.5 0.027 5.9E-07 53.6 2.9 25 389-413 35-59 (253)
284 PRK11629 lolD lipoprotein tran 94.5 0.031 6.7E-07 53.1 3.2 26 386-411 34-59 (233)
285 PF08423 Rad51: Rad51; InterP 94.5 0.026 5.7E-07 55.0 2.8 29 386-414 36-65 (256)
286 TIGR02238 recomb_DMC1 meiotic 94.5 0.03 6.6E-07 56.2 3.3 24 388-411 97-120 (313)
287 KOG2680 DNA helicase TIP49, TB 94.5 0.03 6.6E-07 55.7 3.1 54 358-414 40-93 (454)
288 cd00267 ABC_ATPase ABC (ATP-bi 94.4 0.033 7.1E-07 49.5 3.1 27 386-412 24-50 (157)
289 PRK11432 fbpC ferric transport 94.4 0.03 6.5E-07 57.1 3.2 27 386-412 31-57 (351)
290 COG1239 ChlI Mg-chelatase subu 94.4 0.038 8.2E-07 57.2 3.9 49 355-411 14-62 (423)
291 TIGR02538 type_IV_pilB type IV 94.4 0.061 1.3E-06 58.3 5.7 49 355-412 293-341 (564)
292 PRK10575 iron-hydroxamate tran 94.4 0.029 6.4E-07 54.4 2.9 26 386-411 36-61 (265)
293 PRK11247 ssuB aliphatic sulfon 94.4 0.033 7.2E-07 54.1 3.3 26 386-411 37-62 (257)
294 PLN02348 phosphoribulokinase 94.4 0.049 1.1E-06 56.2 4.6 24 389-412 51-74 (395)
295 PRK13543 cytochrome c biogenes 94.3 0.034 7.4E-07 52.2 3.1 26 386-411 36-61 (214)
296 TIGR02324 CP_lyasePhnL phospho 94.3 0.036 7.7E-07 52.2 3.3 26 386-411 33-58 (224)
297 TIGR00554 panK_bact pantothena 94.3 0.033 7.2E-07 55.4 3.2 24 389-412 64-87 (290)
298 PRK11823 DNA repair protein Ra 94.3 0.045 9.8E-07 57.6 4.3 26 386-411 79-104 (446)
299 cd03232 ABC_PDR_domain2 The pl 94.3 0.036 7.7E-07 51.2 3.2 25 386-410 32-56 (192)
300 KOG0060 Long-chain acyl-CoA tr 94.3 0.03 6.6E-07 59.9 2.9 24 387-410 461-484 (659)
301 PRK14274 phosphate ABC transpo 94.3 0.04 8.6E-07 53.3 3.6 26 386-411 37-62 (259)
302 PRK10436 hypothetical protein; 94.3 0.07 1.5E-06 56.4 5.6 50 354-412 194-243 (462)
303 TIGR02239 recomb_RAD51 DNA rep 94.3 0.033 7.1E-07 56.0 3.1 24 387-410 96-119 (316)
304 COG4178 ABC-type uncharacteriz 94.3 0.032 6.9E-07 60.4 3.1 26 385-410 417-442 (604)
305 PRK12724 flagellar biosynthesi 94.3 0.038 8.3E-07 57.6 3.6 24 388-411 224-247 (432)
306 PRK11701 phnK phosphonate C-P 94.2 0.036 7.9E-07 53.5 3.2 26 386-411 31-56 (258)
307 KOG0163 Myosin class VI heavy 94.2 1.4 3.1E-05 48.6 15.3 17 222-238 994-1010(1259)
308 cd03248 ABCC_TAP TAP, the Tran 94.2 0.043 9.2E-07 51.7 3.6 26 386-411 39-64 (226)
309 PRK12727 flagellar biosynthesi 94.2 0.042 9E-07 58.9 3.7 25 387-411 350-374 (559)
310 PRK14242 phosphate transporter 94.2 0.041 8.8E-07 52.9 3.4 27 386-412 31-57 (253)
311 PRK14261 phosphate ABC transpo 94.2 0.037 8E-07 53.2 3.0 27 386-412 31-57 (253)
312 PF13555 AAA_29: P-loop contai 94.2 0.057 1.2E-06 41.4 3.4 21 389-409 25-45 (62)
313 TIGR00767 rho transcription te 94.1 0.042 9.2E-07 56.9 3.5 28 385-412 166-193 (415)
314 PRK15056 manganese/iron transp 94.1 0.039 8.4E-07 53.9 3.2 26 386-411 32-57 (272)
315 PRK14721 flhF flagellar biosyn 94.1 0.076 1.7E-06 55.5 5.4 25 387-411 191-215 (420)
316 PRK13645 cbiO cobalt transport 94.1 0.04 8.6E-07 54.3 3.2 26 386-411 36-61 (289)
317 PRK13648 cbiO cobalt transport 94.1 0.042 9E-07 53.5 3.3 26 386-411 34-59 (269)
318 PRK15112 antimicrobial peptide 94.1 0.041 8.9E-07 53.5 3.2 26 386-411 38-63 (267)
319 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 94.1 0.039 8.5E-07 52.2 3.0 27 385-411 46-72 (224)
320 TIGR00959 ffh signal recogniti 94.0 0.046 9.9E-07 57.3 3.7 26 386-411 98-123 (428)
321 PTZ00111 DNA replication licen 94.0 0.063 1.4E-06 60.7 4.9 23 389-411 494-516 (915)
322 PRK13546 teichoic acids export 94.0 0.041 9E-07 53.7 3.1 27 385-411 48-74 (264)
323 PRK10419 nikE nickel transport 94.0 0.042 9.1E-07 53.6 3.2 26 386-411 37-62 (268)
324 cd03233 ABC_PDR_domain1 The pl 94.0 0.041 8.9E-07 51.3 3.0 26 386-411 32-57 (202)
325 cd01121 Sms Sms (bacterial rad 94.0 0.054 1.2E-06 55.7 4.0 26 386-411 81-106 (372)
326 cd03369 ABCC_NFT1 Domain 2 of 94.0 0.052 1.1E-06 50.5 3.6 26 386-411 33-58 (207)
327 PF01057 Parvo_NS1: Parvovirus 94.0 0.031 6.7E-07 55.0 2.1 27 386-412 112-138 (271)
328 PRK13632 cbiO cobalt transport 94.0 0.047 1E-06 53.2 3.4 26 386-411 34-59 (271)
329 COG0802 Predicted ATPase or ki 94.0 0.12 2.7E-06 46.3 5.7 29 386-414 24-52 (149)
330 TIGR02769 nickel_nikE nickel i 94.0 0.044 9.5E-07 53.2 3.1 26 386-411 36-61 (265)
331 TIGR03819 heli_sec_ATPase heli 93.9 0.054 1.2E-06 55.0 3.9 26 387-412 178-203 (340)
332 PRK06851 hypothetical protein; 93.9 0.044 9.6E-07 56.2 3.2 25 387-411 214-238 (367)
333 PRK09354 recA recombinase A; P 93.9 0.052 1.1E-06 55.3 3.7 23 388-410 61-83 (349)
334 PLN03186 DNA repair protein RA 93.9 0.039 8.5E-07 56.1 2.8 25 387-411 123-147 (342)
335 PRK14237 phosphate transporter 93.9 0.048 1E-06 53.1 3.3 27 385-411 44-70 (267)
336 PRK10253 iron-enterobactin tra 93.9 0.043 9.3E-07 53.3 3.0 26 386-411 32-57 (265)
337 PRK14235 phosphate transporter 93.8 0.054 1.2E-06 52.7 3.5 28 385-412 43-70 (267)
338 cd03294 ABC_Pro_Gly_Bertaine T 93.8 0.05 1.1E-06 53.1 3.3 27 385-411 48-74 (269)
339 PRK11831 putative ABC transpor 93.8 0.047 1E-06 53.2 3.1 26 386-411 32-57 (269)
340 PRK14273 phosphate ABC transpo 93.8 0.048 1E-06 52.5 3.1 26 386-411 32-57 (254)
341 PRK14248 phosphate ABC transpo 93.8 0.053 1.2E-06 52.7 3.4 26 386-411 46-71 (268)
342 PRK11607 potG putrescine trans 93.8 0.047 1E-06 56.2 3.1 26 386-411 44-69 (377)
343 PRK12269 bifunctional cytidyla 93.8 0.051 1.1E-06 61.5 3.7 26 389-414 36-61 (863)
344 PF01580 FtsK_SpoIIIE: FtsK/Sp 93.8 0.053 1.1E-06 50.4 3.2 23 389-411 40-62 (205)
345 PRK09452 potA putrescine/sperm 93.7 0.048 1E-06 56.1 3.1 26 386-411 39-64 (375)
346 PRK14243 phosphate transporter 93.7 0.061 1.3E-06 52.2 3.6 27 386-412 35-61 (264)
347 cd03267 ABC_NatA_like Similar 93.7 0.052 1.1E-06 51.8 3.0 27 385-411 45-71 (236)
348 PRK14260 phosphate ABC transpo 93.7 0.059 1.3E-06 52.1 3.4 27 386-412 32-58 (259)
349 PRK10744 pstB phosphate transp 93.7 0.052 1.1E-06 52.5 3.1 26 386-411 38-63 (260)
350 PRK14238 phosphate transporter 93.6 0.062 1.3E-06 52.4 3.5 27 385-411 48-74 (271)
351 PRK13650 cbiO cobalt transport 93.6 0.059 1.3E-06 52.9 3.3 27 385-411 31-57 (279)
352 PRK13649 cbiO cobalt transport 93.6 0.054 1.2E-06 53.0 3.0 26 386-411 32-57 (280)
353 CHL00131 ycf16 sulfate ABC tra 93.5 0.057 1.2E-06 51.8 3.0 25 386-410 32-56 (252)
354 PRK14236 phosphate transporter 93.5 0.063 1.4E-06 52.4 3.4 27 385-411 49-75 (272)
355 PRK14265 phosphate ABC transpo 93.5 0.058 1.3E-06 52.8 3.1 28 385-412 44-71 (274)
356 cd03291 ABCC_CFTR1 The CFTR su 93.4 0.063 1.4E-06 53.0 3.3 27 385-411 61-87 (282)
357 PRK09435 membrane ATPase/prote 93.4 0.065 1.4E-06 54.3 3.4 24 388-411 57-80 (332)
358 PRK11860 bifunctional 3-phosph 93.4 0.059 1.3E-06 59.4 3.3 26 389-414 444-469 (661)
359 PRK13635 cbiO cobalt transport 93.3 0.068 1.5E-06 52.5 3.3 26 386-411 32-57 (279)
360 KOG2383 Predicted ATPase [Gene 93.3 0.047 1E-06 56.2 2.2 20 385-404 112-131 (467)
361 COG0468 RecA RecA/RadA recombi 93.3 0.072 1.6E-06 52.7 3.5 29 385-413 56-86 (279)
362 PLN02796 D-glycerate 3-kinase 93.3 0.069 1.5E-06 54.3 3.4 23 390-412 103-125 (347)
363 PRK13643 cbiO cobalt transport 93.3 0.065 1.4E-06 52.9 3.2 26 386-411 31-56 (288)
364 COG1124 DppF ABC-type dipeptid 93.3 0.064 1.4E-06 51.8 3.0 26 386-411 32-57 (252)
365 TIGR01448 recD_rel helicase, p 93.3 0.11 2.4E-06 57.9 5.3 24 388-411 339-362 (720)
366 PRK14263 phosphate ABC transpo 93.3 0.064 1.4E-06 52.1 3.1 26 386-411 33-58 (261)
367 PRK13642 cbiO cobalt transport 93.3 0.072 1.6E-06 52.1 3.3 26 386-411 32-57 (277)
368 PRK13640 cbiO cobalt transport 93.2 0.073 1.6E-06 52.3 3.4 26 386-411 32-57 (282)
369 PRK14275 phosphate ABC transpo 93.2 0.07 1.5E-06 52.6 3.2 27 385-411 63-89 (286)
370 COG5192 BMS1 GTP-binding prote 93.2 0.078 1.7E-06 56.6 3.6 26 386-411 67-93 (1077)
371 PRK10875 recD exonuclease V su 93.2 0.067 1.5E-06 58.5 3.2 23 388-410 168-190 (615)
372 PRK13651 cobalt transporter AT 93.1 0.071 1.5E-06 53.2 3.1 26 386-411 32-57 (305)
373 PRK14259 phosphate ABC transpo 93.1 0.07 1.5E-06 52.0 3.0 26 386-411 38-63 (269)
374 cd03288 ABCC_SUR2 The SUR doma 93.1 0.085 1.8E-06 51.0 3.6 27 385-411 45-71 (257)
375 PRK13646 cbiO cobalt transport 93.0 0.079 1.7E-06 52.2 3.3 26 386-411 32-57 (286)
376 PRK13634 cbiO cobalt transport 93.0 0.079 1.7E-06 52.3 3.2 26 386-411 32-57 (290)
377 PRK10923 glnG nitrogen regulat 93.0 0.16 3.5E-06 53.2 5.7 51 356-412 136-186 (469)
378 TIGR00416 sms DNA repair prote 92.9 0.11 2.4E-06 54.8 4.4 26 386-411 93-118 (454)
379 PRK13631 cbiO cobalt transport 92.9 0.083 1.8E-06 53.1 3.3 27 385-411 50-76 (320)
380 PRK14246 phosphate ABC transpo 92.9 0.084 1.8E-06 51.2 3.2 26 386-411 35-60 (257)
381 PRK14252 phosphate ABC transpo 92.9 0.08 1.7E-06 51.3 3.1 26 386-411 41-66 (265)
382 PRK13633 cobalt transporter AT 92.9 0.084 1.8E-06 51.8 3.2 26 386-411 35-60 (280)
383 PRK14271 phosphate ABC transpo 92.9 0.078 1.7E-06 52.0 3.0 26 386-411 46-71 (276)
384 TIGR02655 circ_KaiC circadian 92.9 0.093 2E-06 55.8 3.7 25 386-410 262-286 (484)
385 TIGR02915 PEP_resp_reg putativ 92.8 0.19 4.2E-06 52.2 6.0 26 387-412 162-187 (445)
386 PRK10070 glycine betaine trans 92.8 0.08 1.7E-06 55.0 3.1 27 385-411 52-78 (400)
387 PRK14254 phosphate ABC transpo 92.8 0.083 1.8E-06 52.1 3.0 26 386-411 64-89 (285)
388 TIGR01447 recD exodeoxyribonuc 92.8 0.085 1.8E-06 57.4 3.3 23 388-410 161-183 (586)
389 TIGR02768 TraA_Ti Ti-type conj 92.8 0.14 2.9E-06 57.4 5.0 40 361-410 352-391 (744)
390 PRK13636 cbiO cobalt transport 92.7 0.09 1.9E-06 51.7 3.2 26 386-411 31-56 (283)
391 PRK14723 flhF flagellar biosyn 92.7 0.14 3E-06 57.2 4.8 25 387-411 185-209 (767)
392 COG1485 Predicted ATPase [Gene 92.7 0.15 3.4E-06 51.7 4.8 26 384-409 62-87 (367)
393 PRK14268 phosphate ABC transpo 92.6 0.094 2E-06 50.7 3.1 26 386-411 37-62 (258)
394 PRK14258 phosphate ABC transpo 92.6 0.091 2E-06 50.9 3.0 27 386-412 32-58 (261)
395 COG0542 clpA ATP-binding subun 92.5 0.13 2.9E-06 57.3 4.4 49 354-411 166-215 (786)
396 COG3829 RocR Transcriptional r 92.5 0.21 4.5E-06 53.3 5.6 56 351-412 238-293 (560)
397 PRK15093 antimicrobial peptide 92.5 0.1 2.2E-06 52.6 3.2 26 386-411 32-57 (330)
398 PRK06731 flhF flagellar biosyn 92.4 0.12 2.6E-06 50.8 3.7 26 386-411 74-99 (270)
399 TIGR02868 CydC thiol reductant 92.4 0.1 2.2E-06 55.7 3.3 28 385-412 359-386 (529)
400 COG2804 PulE Type II secretory 92.4 0.21 4.6E-06 52.9 5.6 51 354-413 234-284 (500)
401 PRK13641 cbiO cobalt transport 92.4 0.11 2.3E-06 51.3 3.2 26 386-411 32-57 (287)
402 PRK11519 tyrosine kinase; Prov 92.4 3.9 8.3E-05 45.8 15.8 44 367-411 507-551 (719)
403 PRK14264 phosphate ABC transpo 92.4 0.1 2.2E-06 51.9 3.1 27 385-411 69-95 (305)
404 PRK09841 cryptic autophosphory 92.3 4.5 9.7E-05 45.3 16.2 45 367-412 512-557 (726)
405 PRK13537 nodulation ABC transp 92.3 0.11 2.4E-06 51.8 3.2 26 386-411 32-57 (306)
406 PRK11308 dppF dipeptide transp 92.2 0.12 2.6E-06 52.2 3.4 26 386-411 40-65 (327)
407 PLN02318 phosphoribulokinase/u 92.2 0.15 3.3E-06 55.4 4.3 24 388-411 66-89 (656)
408 PRK13637 cbiO cobalt transport 92.2 0.11 2.5E-06 51.1 3.2 26 386-411 32-57 (287)
409 PF03193 DUF258: Protein of un 92.1 0.12 2.6E-06 47.0 2.9 24 388-411 36-59 (161)
410 TIGR01842 type_I_sec_PrtD type 92.1 0.12 2.5E-06 55.5 3.3 28 385-412 342-369 (544)
411 PRK09473 oppD oligopeptide tra 92.1 0.1 2.3E-06 52.6 2.7 27 386-412 41-67 (330)
412 PF06431 Polyoma_lg_T_C: Polyo 92.0 0.3 6.4E-06 50.0 5.8 26 387-412 155-180 (417)
413 PRK11361 acetoacetate metaboli 92.0 0.23 4.9E-06 51.7 5.3 26 387-412 166-191 (457)
414 PRK15079 oligopeptide ABC tran 91.9 0.13 2.8E-06 52.0 3.2 26 386-411 46-71 (331)
415 PRK11022 dppD dipeptide transp 91.9 0.12 2.5E-06 52.2 2.9 27 386-412 32-58 (326)
416 PRK14257 phosphate ABC transpo 91.9 0.12 2.6E-06 52.2 3.0 28 385-412 106-133 (329)
417 PRK11176 lipid transporter ATP 91.9 0.15 3.1E-06 55.1 3.8 28 385-412 367-394 (582)
418 PRK09302 circadian clock prote 91.8 0.15 3.2E-06 54.4 3.7 24 387-410 273-296 (509)
419 PRK11160 cysteine/glutathione 91.8 0.13 2.9E-06 55.6 3.4 28 385-412 364-391 (574)
420 PRK12678 transcription termina 91.8 0.13 2.8E-06 55.6 3.2 25 387-411 416-440 (672)
421 KOG3928 Mitochondrial ribosome 91.7 0.13 2.8E-06 53.2 2.9 18 385-402 177-194 (461)
422 TIGR02204 MsbA_rel ABC transpo 91.7 0.16 3.5E-06 54.6 3.8 28 385-412 364-391 (576)
423 COG1419 FlhF Flagellar GTP-bin 91.6 0.16 3.5E-06 52.5 3.5 25 386-410 202-226 (407)
424 PRK05506 bifunctional sulfate 91.6 0.15 3.2E-06 56.0 3.4 26 386-411 459-484 (632)
425 PRK09700 D-allose transporter 91.5 0.13 2.8E-06 54.7 2.9 26 386-411 288-313 (510)
426 PRK13536 nodulation factor exp 91.5 0.15 3.3E-06 51.7 3.3 26 386-411 66-91 (340)
427 PRK10789 putative multidrug tr 91.5 0.16 3.4E-06 55.0 3.5 27 385-411 339-365 (569)
428 KOG0064 Peroxisomal long-chain 91.4 0.15 3.2E-06 54.4 3.0 25 385-409 506-530 (728)
429 PRK11819 putative ABC transpor 91.3 0.15 3.3E-06 54.9 3.2 26 386-411 32-57 (556)
430 KOG0979 Structural maintenance 91.2 0.15 3.2E-06 57.5 3.0 25 391-415 46-70 (1072)
431 PRK10636 putative ABC transpor 91.2 0.16 3.4E-06 55.9 3.3 27 385-411 336-362 (638)
432 TIGR02857 CydD thiol reductant 91.2 0.17 3.6E-06 54.1 3.3 28 385-412 346-373 (529)
433 KOG0243 Kinesin-like protein [ 91.1 0.19 4.2E-06 57.1 3.8 52 352-403 94-145 (1041)
434 PRK15064 ABC transporter ATP-b 91.1 0.16 3.6E-06 54.3 3.2 26 386-411 344-369 (530)
435 PF02456 Adeno_IVa2: Adenoviru 91.1 0.15 3.4E-06 50.9 2.7 20 389-408 89-108 (369)
436 COG4962 CpaF Flp pilus assembl 91.0 0.24 5.2E-06 50.2 4.0 24 388-411 174-197 (355)
437 PRK10522 multidrug transporter 91.0 0.18 3.8E-06 54.3 3.2 27 385-411 347-373 (547)
438 KOG1433 DNA repair protein RAD 90.8 0.17 3.8E-06 51.0 2.8 20 391-410 115-134 (326)
439 PRK13657 cyclic beta-1,2-gluca 90.8 0.19 4.1E-06 54.4 3.3 27 385-411 359-385 (588)
440 PRK11174 cysteine/glutathione 90.7 0.18 3.9E-06 54.6 3.0 27 385-411 374-400 (588)
441 TIGR02203 MsbA_lipidA lipid A 90.7 0.23 4.9E-06 53.4 3.8 28 385-412 356-383 (571)
442 TIGR00954 3a01203 Peroxysomal 90.7 0.19 4.2E-06 55.4 3.3 27 385-411 476-502 (659)
443 PRK15439 autoinducer 2 ABC tra 90.6 0.19 4.1E-06 53.6 3.0 26 386-411 36-61 (510)
444 PRK15134 microcin C ABC transp 90.6 0.17 3.7E-06 54.1 2.7 26 386-411 34-59 (529)
445 PLN03140 ABC transporter G fam 90.6 0.15 3.2E-06 61.2 2.4 27 385-411 189-215 (1470)
446 TIGR03415 ABC_choXWV_ATP choli 90.6 0.2 4.3E-06 51.8 3.1 26 386-411 49-74 (382)
447 PRK11147 ABC transporter ATPas 90.5 0.2 4.2E-06 55.1 3.1 26 386-411 344-369 (635)
448 TIGR03797 NHPM_micro_ABC2 NHPM 90.5 0.21 4.5E-06 55.2 3.3 27 385-411 477-503 (686)
449 PRK10762 D-ribose transporter 90.4 0.19 4.1E-06 53.4 2.9 26 386-411 277-302 (501)
450 PRK10463 hydrogenase nickel in 90.4 0.24 5.1E-06 49.3 3.3 23 389-411 106-128 (290)
451 PRK10261 glutathione transport 90.4 0.22 4.7E-06 54.6 3.3 26 386-411 41-66 (623)
452 COG2204 AtoC Response regulato 90.4 0.46 1E-05 50.2 5.6 52 355-412 138-189 (464)
453 COG4778 PhnL ABC-type phosphon 90.3 0.27 5.8E-06 45.6 3.3 28 387-414 37-64 (235)
454 PLN03073 ABC transporter F fam 90.3 0.2 4.2E-06 56.0 2.9 26 386-411 202-227 (718)
455 TIGR03238 dnd_assoc_3 dnd syst 90.3 0.26 5.7E-06 52.2 3.7 20 386-405 31-50 (504)
456 TIGR01194 cyc_pep_trnsptr cycl 90.3 0.22 4.7E-06 53.7 3.2 28 385-412 366-393 (555)
457 TIGR01193 bacteriocin_ABC ABC- 90.2 0.24 5.1E-06 55.0 3.5 28 385-412 498-525 (708)
458 TIGR00958 3a01208 Conjugate Tr 90.1 0.26 5.7E-06 54.8 3.8 28 385-412 505-532 (711)
459 PRK10938 putative molybdenum t 90.1 0.21 4.5E-06 52.8 2.8 25 386-410 285-309 (490)
460 cd01882 BMS1 Bms1. Bms1 is an 90.1 0.31 6.7E-06 46.4 3.7 27 385-411 37-63 (225)
461 PRK11288 araG L-arabinose tran 90.0 0.2 4.3E-06 53.2 2.6 27 385-411 277-303 (501)
462 TIGR03269 met_CoM_red_A2 methy 90.0 0.25 5.3E-06 52.8 3.2 26 386-411 309-334 (520)
463 PRK10535 macrolide transporter 89.9 0.25 5.3E-06 54.5 3.3 26 386-411 33-58 (648)
464 TIGR03375 type_I_sec_LssB type 89.9 0.25 5.5E-06 54.6 3.4 28 385-412 489-516 (694)
465 TIGR01846 type_I_sec_HlyB type 89.9 0.26 5.5E-06 54.6 3.4 28 385-412 481-508 (694)
466 TIGR03719 ABC_ABC_ChvD ATP-bin 89.9 0.22 4.8E-06 53.6 2.8 26 386-411 347-372 (552)
467 TIGR03796 NHPM_micro_ABC1 NHPM 89.9 0.25 5.5E-06 54.7 3.3 27 385-411 503-529 (710)
468 cd01858 NGP_1 NGP-1. Autoanti 89.7 0.26 5.7E-06 43.7 2.7 23 388-410 103-125 (157)
469 PLN03046 D-glycerate 3-kinase; 89.6 0.29 6.3E-06 51.2 3.3 22 390-411 215-236 (460)
470 PLN03073 ABC transporter F fam 89.6 0.26 5.6E-06 55.0 3.2 26 386-411 534-559 (718)
471 TIGR01192 chvA glucan exporter 89.6 0.27 5.9E-06 53.4 3.2 27 385-411 359-385 (585)
472 PRK10790 putative multidrug tr 89.5 0.29 6.2E-06 53.0 3.4 28 385-412 365-392 (592)
473 PRK15115 response regulator Gl 89.5 0.5 1.1E-05 49.1 5.0 25 388-412 158-182 (444)
474 PRK15134 microcin C ABC transp 89.4 0.29 6.2E-06 52.4 3.3 26 386-411 311-336 (529)
475 KOG1802 RNA helicase nonsense 89.4 0.19 4.1E-06 54.7 1.8 22 389-410 427-448 (935)
476 cd01857 HSR1_MMR1 HSR1/MMR1. 89.3 0.32 6.8E-06 42.5 2.9 21 389-409 85-105 (141)
477 PRK13545 tagH teichoic acids e 89.3 0.28 6.1E-06 52.7 3.1 26 386-411 49-74 (549)
478 PRK11819 putative ABC transpor 89.3 0.28 6.1E-06 52.9 3.1 26 386-411 349-374 (556)
479 COG4608 AppF ABC-type oligopep 89.3 0.32 7E-06 47.7 3.2 27 386-412 38-64 (268)
480 COG1132 MdlB ABC-type multidru 89.2 0.33 7.1E-06 52.4 3.5 29 385-413 353-381 (567)
481 PRK09519 recA DNA recombinatio 89.1 0.33 7.2E-06 54.4 3.5 22 387-408 60-81 (790)
482 PTZ00322 6-phosphofructo-2-kin 89.1 0.25 5.4E-06 54.6 2.6 26 388-413 216-241 (664)
483 COG1119 ModF ABC-type molybden 89.0 0.34 7.4E-06 47.0 3.1 26 385-410 55-80 (257)
484 PRK13549 xylose transporter AT 89.0 0.31 6.7E-06 51.8 3.1 26 386-411 287-312 (506)
485 PTZ00491 major vault protein; 89.0 47 0.001 37.8 19.8 63 81-150 644-712 (850)
486 cd01854 YjeQ_engC YjeQ/EngC. 89.0 0.31 6.7E-06 48.2 2.9 25 388-412 162-186 (287)
487 PRK15439 autoinducer 2 ABC tra 88.9 0.28 6E-06 52.4 2.7 26 386-411 288-313 (510)
488 PRK10261 glutathione transport 88.9 0.33 7.2E-06 53.2 3.3 26 386-411 349-374 (623)
489 TIGR03600 phage_DnaB phage rep 88.9 0.39 8.4E-06 50.0 3.7 26 386-411 193-218 (421)
490 PRK00098 GTPase RsgA; Reviewed 88.9 0.3 6.4E-06 48.6 2.7 24 388-411 165-188 (298)
491 PRK10982 galactose/methyl gala 88.8 0.27 5.9E-06 52.0 2.5 26 386-411 273-298 (491)
492 PF05272 VirE: Virulence-assoc 88.8 0.37 8E-06 45.2 3.2 22 389-410 54-75 (198)
493 PRK13889 conjugal transfer rel 88.7 0.49 1.1E-05 54.5 4.6 40 360-409 345-384 (988)
494 TIGR01613 primase_Cterm phage/ 88.6 0.87 1.9E-05 45.2 5.9 26 387-412 76-101 (304)
495 COG4987 CydC ABC-type transpor 88.6 0.42 9E-06 51.1 3.6 30 385-414 362-391 (573)
496 cd01134 V_A-ATPase_A V/A-type 88.5 0.37 7.9E-06 49.3 3.1 28 387-414 157-184 (369)
497 TIGR00665 DnaB replicative DNA 88.4 0.42 9.1E-06 49.8 3.6 25 386-410 194-218 (434)
498 PRK06002 fliI flagellum-specif 88.3 0.35 7.7E-06 50.9 2.9 27 386-412 164-190 (450)
499 COG3604 FhlA Transcriptional r 88.2 0.83 1.8E-05 48.5 5.5 53 354-412 219-271 (550)
500 PLN02772 guanylate kinase 88.1 0.41 8.9E-06 49.6 3.2 25 387-411 135-159 (398)
No 1
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.1e-100 Score=752.19 Aligned_cols=407 Identities=56% Similarity=0.764 Sum_probs=361.2
Q ss_pred CcccchhhhHHHHHHHHHhhhhhhccccCCCCcCCCCCCCCCCCCCC--CC-chhhhhhhcCCC-CCCCCCCCCCCchhh
Q 014938 1 MPASKLSSCLAVAAAVASLSTASNRAFADAPSRFSFFSSSPQPTSSG--ND-EAEQTADAQKSR-EPEEPRGSGFDPEAL 76 (415)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~--~~-~~~~~~~~~~~~-~~~~~~~~~fdp~~l 76 (415)
||+.+.+ .+.++.+++...+-+.+|+||+|.|++||++|++|-|| |+ |++........| +++...+++|||++|
T Consensus 1 Ma~kc~a--~~i~a~~~S~~~~~nka~ad~~f~~~~fs~sp~~~~pp~~~~~~~s~~~~~~~~p~~~Pk~~~~gFDpeaL 78 (630)
T KOG0742|consen 1 MAQKCAA--GSISALAMSWLFGINKAYADSRFGFPGFSASPPPPLPPAQPGAPGSGDRGEGDRPDPAPKDSWSGFDPEAL 78 (630)
T ss_pred CchhHHH--HHHHHHHHHHHhccchhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccccccCCChHHH
Confidence 6665333 33344444445555669999999999998876654333 22 222111111111 223344789999999
Q ss_pred cHHHHHHHHHhcCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 014938 77 ERAAKALREFNSSRHAREAFDIMRKQEQTRLAELDVEKVHYEAIQSQVDVERQRKLAEEHRNLVQQKAQARAQGLRNEDE 156 (415)
Q Consensus 77 er~aka~r~l~~s~~a~~~~~~~~~qe~t~q~e~~~~~~e~~~~~~~~~~~~~~~~~ee~r~~~~~~~~~~~~~a~y~D~ 156 (415)
||||||||+||.|||||++|+|+++||+|+|.|++++.++|++++++.+++++|+.+||+||++++|+++++|+++|+|+
T Consensus 79 ERaAKAlrein~s~~aK~vfel~r~qE~Trq~E~~~k~~~~eA~qa~~~~er~r~~~Ee~rk~lq~qaq~k~q~arYqD~ 158 (630)
T KOG0742|consen 79 ERAAKALREINHSPYAKDVFELARMQEQTRQAEQQAKTKEYEAAQAQLKSERIRVQAEERRKTLQEETQQKQQRARYQDK 158 (630)
T ss_pred HHHHHHHHhhccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhchHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhh
Q 014938 157 LARKRLQTDHEAQRRHNTELVKMQEESSIRKEQARRSTEEQIQAQQRLTEKERAEIERETIRVKAMAEAEGRAHEAKLTE 236 (415)
Q Consensus 157 L~rkr~q~ele~~~~~~e~~~~~qees~~rqE~~r~~~e~~~~~~r~~~e~e~~~l~~~~~~~k~~ae~~~r~~~~r~n~ 236 (415)
|+||||+++++.|+..|+++|++||+|++|||++|+.|+++|++++++||.++++++++|++.|+++|++||+|+++.|+
T Consensus 159 larkr~~~e~e~qr~~n~ElvrmQEeS~irqE~aRraTeE~iqaqrr~tE~erae~EretiRvkA~Aeaegraheakl~e 238 (630)
T KOG0742|consen 159 LARKRYEDELEAQRRLNEELVRMQEESVIRQEQARRATEEQIQAQRRKTEMERAEAERETIRVKAKAEAEGRAHEAKLNE 238 (630)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhcchhhhhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhhhhHHHHHhhhhhhhhhHHHHHHhhccccceeeeecccceeeeceecccchhhhhhhHHHHHhCCCcc
Q 014938 237 DHNRRMLIERINGEREKWLAAINTTFSHIEEGVRSLLTDRNKLVMTVGGATALAAGIYTTREGARVTWGYVNRILGQPSL 316 (415)
Q Consensus 237 dl~le~i~~ka~e~r~~~le~ik~~~~~lg~gl~all~D~~klv~~v~g~t~Lavgvytak~~~~v~~~~ve~~Lg~psl 316 (415)
|++++||+.+++++|++|++.|+++|++||+|++.+|+|++|++++|||+++|++|+||+++|+.|+|+||+++||+|||
T Consensus 239 dvnrr~l~~~~n~eRekwl~aInTtf~higgG~r~~ltD~~Kli~tVgGlTaLAaGvYTtkeg~~V~w~yi~r~LGqPSL 318 (630)
T KOG0742|consen 239 DVNRRQLRLKANEEREKWLEAINTTFTHIGGGLRAFLTDWNKLIATVGGLTALAAGVYTTKEGTLVTWRYIERRLGQPSL 318 (630)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhhhHHHhhhHHHHHhhhhHhHHHHhhhHHHHHhhheeccccchhHHHHHHHHcCCchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccCCCCccchhHHHHHHHhhhcccCCCCCCccccCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCC
Q 014938 317 IRESSIGKFPWSGLLSQAMNKVIRNKTSAGTAGPVEAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPP 396 (415)
Q Consensus 317 vRetsr~~~p~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPP 396 (415)
|||+||..|||.+.++...+.+-. ...........|++||++|.+..+|++|+..+.|++.|..|+|||||||||
T Consensus 319 iREsSrg~~pw~gsls~~k~~i~~-----~~~~s~~gk~pl~~ViL~psLe~Rie~lA~aTaNTK~h~apfRNilfyGPP 393 (630)
T KOG0742|consen 319 IRESSRGRFPWIGSLSALKHPIQG-----SRSASSRGKDPLEGVILHPSLEKRIEDLAIATANTKKHQAPFRNILFYGPP 393 (630)
T ss_pred hhhhccccCCCcccHHHHhchhhh-----hHhhhhcCCCCcCCeecCHHHHHHHHHHHHHhcccccccchhhheeeeCCC
Confidence 999999999999988776655511 011122334569999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHhCCC
Q 014938 397 GTGKTMVAREIARKSVWC 414 (415)
Q Consensus 397 GTGKT~lAkaLA~~lg~~ 414 (415)
||||||+|+-||.++|||
T Consensus 394 GTGKTm~ArelAr~SGlD 411 (630)
T KOG0742|consen 394 GTGKTMFARELARHSGLD 411 (630)
T ss_pred CCCchHHHHHHHhhcCCc
Confidence 999999999999999998
No 2
>PF12037 DUF3523: Domain of unknown function (DUF3523); InterPro: IPR021911 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with PF00004 from PFAM. This domain has a conserved LER sequence motif.
Probab=100.00 E-value=1.7e-75 Score=559.64 Aligned_cols=259 Identities=59% Similarity=0.795 Sum_probs=254.6
Q ss_pred CCCCCCCCCCCCCchhhcHHHHHHHHHhcCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 014938 60 SREPEEPRGSGFDPEALERAAKALREFNSSRHAREAFDIMRKQEQTRLAELDVEKVHYEAIQSQVDVERQRKLAEEHRNL 139 (415)
Q Consensus 60 ~~~~~~~~~~~fdp~~ler~aka~r~l~~s~~a~~~~~~~~~qe~t~q~e~~~~~~e~~~~~~~~~~~~~~~~~ee~r~~ 139 (415)
.++++...+++|||++|||||||||+|++|||||+||||+++||.|||+|++++++||+++.+|+++++.||++||+|||
T Consensus 18 ~~~~~~~~~~~FDP~aLERaAkAlrel~~S~~Ak~afel~k~QE~TkQ~E~~ak~~e~ea~~~q~~~e~~rv~~EE~Rkt 97 (276)
T PF12037_consen 18 RNDNPRTTASGFDPEALERAAKALRELNSSPHAKKAFELMKKQEETKQAELQAKIAEYEAAQAQAEIERQRVEAEERRKT 97 (276)
T ss_pred CCCCCCcccCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555567999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014938 140 VQQKAQARAQGLRNEDELARKRLQTDHEAQRRHNTELVKMQEESSIRKEQARRSTEEQIQAQQRLTEKERAEIERETIRV 219 (415)
Q Consensus 140 ~~~~~~~~~~~a~y~D~L~rkr~q~ele~~~~~~e~~~~~qees~~rqE~~r~~~e~~~~~~r~~~e~e~~~l~~~~~~~ 219 (415)
+++|+++++++++|+|+|+||||+++++.++.+|+++|++||+|+.|||++|++|+++|+++++++++++++|+++|+++
T Consensus 98 ~~~q~q~~~q~aqY~D~LaRkR~~~e~~~qr~~n~e~lk~QEes~~rqE~~Rr~Te~~i~~~r~~t~~~eaeL~~e~~~~ 177 (276)
T PF12037_consen 98 LQQQTQQKQQRAQYEDELARKRYQDELEQQRRRNEELLKMQEESVIRQEQMRRATEEQILAQRRQTEEEEAELRRETERA 177 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhHHHHHhhhhhHHHHHHHHHhhhhHHHHHhhhhhhhhhHHHHHHhhccccceeeeecccceeeeceecccch
Q 014938 220 KAMAEAEGRAHEAKLTEDHNRRMLIERINGEREKWLAAINTTFSHIEEGVRSLLTDRNKLVMTVGGATALAAGIYTTREG 299 (415)
Q Consensus 220 k~~ae~~~r~~~~r~n~dl~le~i~~ka~e~r~~~le~ik~~~~~lg~gl~all~D~~klv~~v~g~t~Lavgvytak~~ 299 (415)
++++|++|||+++|+|+||++++|+.++.++|++||++|+++|++||+|+..||+|+++|+++|||+|+|++|||++++|
T Consensus 178 k~~AEa~gra~~eReN~Di~l~~l~~ka~e~R~t~lesI~t~f~~lg~G~~~lltD~~kl~~~vgg~T~LA~GvYtar~g 257 (276)
T PF12037_consen 178 KAEAEAEGRAKEERENEDINLEQLRLKAEEERETVLESINTTFSHLGEGFRALLTDRDKLTTTVGGLTALAAGVYTAREG 257 (276)
T ss_pred HHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHhCCCcchh
Q 014938 300 ARVTWGYVNRILGQPSLIR 318 (415)
Q Consensus 300 ~~v~~~~ve~~Lg~pslvR 318 (415)
++|+|+||+++||+|+|||
T Consensus 258 t~v~~~yie~rLGkPsLVR 276 (276)
T PF12037_consen 258 TRVAGRYIEARLGKPSLVR 276 (276)
T ss_pred HHHHHHHHHHHcCCCccCC
Confidence 9999999999999999997
No 3
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=5.7e-27 Score=233.49 Aligned_cols=263 Identities=15% Similarity=0.117 Sum_probs=223.3
Q ss_pred hhhhHHHHHHHHHhhhhhhccccCCCCcCCC--CCCCCCCCCCCCCchhhhhhhcC-CCCCCCC-CCCCCCchhhcHHH-
Q 014938 6 LSSCLAVAAAVASLSTASNRAFADAPSRFSF--FSSSPQPTSSGNDEAEQTADAQK-SREPEEP-RGSGFDPEALERAA- 80 (415)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--f~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~fdp~~ler~a- 80 (415)
|+..+++++.++++.+.++ ..+.+|++|+ ||+||++||||-||..+..+... ....+.| ++|+....+||+.|
T Consensus 1 Ma~kc~a~~i~a~~~S~~~--~~nka~ad~~f~~~~fs~sp~~~~pp~~~~~~~s~~~~~~~~p~~~Pk~~~~gFDpeaL 78 (630)
T KOG0742|consen 1 MAQKCAAGSISALAMSWLF--GINKAYADSRFGFPGFSASPPPPLPPAQPGAPGSGDRGEGDRPDPAPKDSWSGFDPEAL 78 (630)
T ss_pred CchhHHHHHHHHHHHHHHh--ccchhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccccccCCChHHH
Confidence 4455555555555555544 4455999997 88898888777666443322211 1222223 37787888999999
Q ss_pred -HHHHHHhcCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 014938 81 -KALREFNSSRHAREAFDIMRKQEQTRLAELDVEKVHYEAIQSQVDVERQRKLAEEHRNLVQQKAQARAQGLRNEDELAR 159 (415)
Q Consensus 81 -ka~r~l~~s~~a~~~~~~~~~qe~t~q~e~~~~~~e~~~~~~~~~~~~~~~~~ee~r~~~~~~~~~~~~~a~y~D~L~r 159 (415)
+|+|.|+.++|++++ ++++|..+++| +++++|+++...+++..+++.+.|..|+.+++|.+..++.+|.+.+.+
T Consensus 79 ERaAKAlrein~s~~a---K~vfel~r~qE-~Trq~E~~~k~~~~eA~qa~~~~er~r~~~Ee~rk~lq~qaq~k~q~a- 153 (630)
T KOG0742|consen 79 ERAAKALREINHSPYA---KDVFELARMQE-QTRQAEQQAKTKEYEAAQAQLKSERIRVQAEERRKTLQEETQQKQQRA- 153 (630)
T ss_pred HHHHHHHHhhccCccH---HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 999999999999999 99999999999 999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHhchHHHHh--hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhh
Q 014938 160 KRLQTDHEAQRRHNTELVKM--QEESSIRKEQARRSTEEQIQAQQRLTEKERAEIERETIRVKAMAEAEGRAHEAKLTED 237 (415)
Q Consensus 160 kr~q~ele~~~~~~e~~~~~--qees~~rqE~~r~~~e~~~~~~r~~~e~e~~~l~~~~~~~k~~ae~~~r~~~~r~n~d 237 (415)
+|||++.+++.+.+.+.++ ++|++.+||+.-++.|. +|++|+++++.++++|++++++
T Consensus 154 -rYqD~larkr~~~e~e~qr~~n~ElvrmQEeS~irqE~----aRraTeE~iqaqrr~tE~erae--------------- 213 (630)
T KOG0742|consen 154 -RYQDKLARKRYEDELEAQRRLNEELVRMQEESVIRQEQ----ARRATEEQIQAQRRKTEMERAE--------------- 213 (630)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHH----HHHhHHHHHHHHHHHhHHHHHH---------------
Confidence 9999999999997765543 45999999999999888 9999999999999999999999
Q ss_pred hHHHHHHHHHhhhhHHHHHhhhhhhhhhHHHHHHhhc-cccceeeee-cccceeeeceec
Q 014938 238 HNRRMLIERINGEREKWLAAINTTFSHIEEGVRSLLT-DRNKLVMTV-GGATALAAGIYT 295 (415)
Q Consensus 238 l~le~i~~ka~e~r~~~le~ik~~~~~lg~gl~all~-D~~klv~~v-~g~t~Lavgvyt 295 (415)
+.++.|+++|.+++++..+..+.+.+++...+....+ ++++|+..+ .++++|.+|+.+
T Consensus 214 ~EretiRvkA~Aeaegraheakl~edvnrr~l~~~~n~eRekwl~aInTtf~higgG~r~ 273 (630)
T KOG0742|consen 214 AERETIRVKAKAEAEGRAHEAKLNEDVNRRQLRLKANEEREKWLEAINTTFTHIGGGLRA 273 (630)
T ss_pred HHHHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHhhhHHHHHHHHHhhhHHHhhhHHHH
Confidence 8899999999999999999999999999999998888 788999998 568999988766
No 4
>PF12037 DUF3523: Domain of unknown function (DUF3523); InterPro: IPR021911 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with PF00004 from PFAM. This domain has a conserved LER sequence motif.
Probab=99.83 E-value=4.2e-19 Score=171.10 Aligned_cols=210 Identities=13% Similarity=0.132 Sum_probs=189.8
Q ss_pred CCCCCCCCCCCCchhhcHHH--HHHHHHhcCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 014938 61 REPEEPRGSGFDPEALERAA--KALREFNSSRHAREAFDIMRKQEQTRLAELDVEKVHYEAIQSQVDVERQRKLAEEHRN 138 (415)
Q Consensus 61 ~~~~~~~~~~fdp~~ler~a--ka~r~l~~s~~a~~~~~~~~~qe~t~q~e~~~~~~e~~~~~~~~~~~~~~~~~ee~r~ 138 (415)
++.+.+++++....+|||.+ +|++.|+...++++| .+.+|.++++| .++++|+.+..++++....+...|..|+
T Consensus 14 ~~~~~~~~~~~~~~~FDP~aLERaAkAlrel~~S~~A---k~afel~k~QE-~TkQ~E~~ak~~e~ea~~~q~~~e~~rv 89 (276)
T PF12037_consen 14 GSKPRNDNPRTTASGFDPEALERAAKALRELNSSPHA---KKAFELMKKQE-ETKQAELQAKIAEYEAAQAQAEIERQRV 89 (276)
T ss_pred CcCCCCCCCCcccCCCCcHHHHHHHHHHHHHhcChhH---HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44677889999999999999 999999999999999 99999999999 9999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchHHHHhhH--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014938 139 LVQQKAQARAQGLRNEDELARKRLQTDHEAQRRHNTELVKMQE--ESSIRKEQARRSTEEQIQAQQRLTEKERAEIERET 216 (415)
Q Consensus 139 ~~~~~~~~~~~~a~y~D~L~rkr~q~ele~~~~~~e~~~~~qe--es~~rqE~~r~~~e~~~~~~r~~~e~e~~~l~~~~ 216 (415)
..+++.+..++.++.+.+.+ +|+|+|+++|++.+...+++. +.+.+||++-.+.|+ +|++|++++..+++.+
T Consensus 90 ~~EE~Rkt~~~q~q~~~q~a--qY~D~LaRkR~~~e~~~qr~~n~e~lk~QEes~~rqE~----~Rr~Te~~i~~~r~~t 163 (276)
T PF12037_consen 90 EAEERRKTLQQQTQQKQQRA--QYEDELARKRYQDELEQQRRRNEELLKMQEESVIRQEQ----MRRATEEQILAQRRQT 163 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHh
Confidence 99999999999999999988 999999999999776555544 888899988888877 9999999999999999
Q ss_pred HHHHHHHHHhhhHHHHHhhhhhHHHHHHHHHhhhhHHHHHhhhhhhhhhHHHHHHhhc-cccceeeee-cccceeeecee
Q 014938 217 IRVKAMAEAEGRAHEAKLTEDHNRRMLIERINGEREKWLAAINTTFSHIEEGVRSLLT-DRNKLVMTV-GGATALAAGIY 294 (415)
Q Consensus 217 ~~~k~~ae~~~r~~~~r~n~dl~le~i~~ka~e~r~~~le~ik~~~~~lg~gl~all~-D~~klv~~v-~g~t~Lavgvy 294 (415)
+..+++ |.++.++.++.++-++.+..-..+.++.-..+..-.. +..+|+..+ .++++|+.|++
T Consensus 164 ~~~eae---------------L~~e~~~~k~~AEa~gra~~eReN~Di~l~~l~~ka~e~R~t~lesI~t~f~~lg~G~~ 228 (276)
T PF12037_consen 164 EEEEAE---------------LRRETERAKAEAEAEGRAKEERENEDINLEQLRLKAEEERETVLESINTTFSHLGEGFR 228 (276)
T ss_pred HHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999988 9999999999999999999999999999888887777 788888887 44666775554
Q ss_pred c
Q 014938 295 T 295 (415)
Q Consensus 295 t 295 (415)
.
T Consensus 229 ~ 229 (276)
T PF12037_consen 229 A 229 (276)
T ss_pred H
Confidence 4
No 5
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=5.4e-14 Score=139.63 Aligned_cols=135 Identities=19% Similarity=0.288 Sum_probs=85.7
Q ss_pred HHhhhhhhhhhHHHHHHhhccccceeeee-cc---cceee--eceecccchhhhhhhH----HHHHhCCCcchhhcccCC
Q 014938 255 LAAINTTFSHIEEGVRSLLTDRNKLVMTV-GG---ATALA--AGIYTTREGARVTWGY----VNRILGQPSLIRESSIGK 324 (415)
Q Consensus 255 le~ik~~~~~lg~gl~all~D~~klv~~v-~g---~t~La--vgvytak~~~~v~~~~----ve~~Lg~pslvRetsr~~ 324 (415)
+..++..+..+|..+..+ |.+..++.. .+ ++.+. +..-..++|++|+.+. |..+|..
T Consensus 65 ~~~l~~~pl~vg~v~e~i--d~~~~iVks~~g~~~vV~i~~~vd~~~L~pG~rVal~~~s~~Iv~vLp~----------- 131 (406)
T COG1222 65 IERLKEPPLIVGTVLEVL--DDGRAIVKSSTGPKFVVNILSFVDRDLLEPGMRVALNRDSYSIVRVLPP----------- 131 (406)
T ss_pred HHHhcCCCceEEEEEEEc--CCceEEEEeCCCCeEEEeccCCcCHHHcCCCCEEEEcCCcceeeeeCCC-----------
Confidence 668888888888877666 556555554 33 22232 4445577888877763 2233321
Q ss_pred CCccchhHHHHHHHhhhc-ccCCCCCCccccCCCccccCChhHHHHHHHHHHHHHhh-hhhcCCCccEEEecCCCCcHHH
Q 014938 325 FPWSGLLSQAMNKVIRNK-TSAGTAGPVEAIKNNGDIILHPSLQRRIQHLAKATANT-KIHQAPFRNMLFYGPPGTGKTM 402 (415)
Q Consensus 325 ~p~~~~~~~~~~~~~~~~-s~~~~~~~~~~~~~~ddvv~~~~l~~~l~~l~~~~~~~-k~~~~p~r~vLl~GPPGTGKT~ 402 (415)
..+..+..| ....|.+.|.+..++++.+ .++.+.++..+.....+ +.+..||+|||||||||||||+
T Consensus 132 ---------~~Dp~V~~M~v~e~PdvtY~dIGGL~~Qi--~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTL 200 (406)
T COG1222 132 ---------EVDPRVSVMEVEEKPDVTYEDIGGLDEQI--QEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTL 200 (406)
T ss_pred ---------ccCchhheeeeccCCCCChhhccCHHHHH--HHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHH
Confidence 111122222 3334555555555555555 55556666555555555 5667999999999999999999
Q ss_pred HHHHHHHHhCC
Q 014938 403 VAREIARKSVW 413 (415)
Q Consensus 403 lAkaLA~~lg~ 413 (415)
||||+|++.+.
T Consensus 201 LAkAVA~~T~A 211 (406)
T COG1222 201 LAKAVANQTDA 211 (406)
T ss_pred HHHHHHhccCc
Confidence 99999998864
No 6
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=1.1e-11 Score=118.34 Aligned_cols=144 Identities=20% Similarity=0.235 Sum_probs=75.8
Q ss_pred HHhhhhhhhhhHHHHHHhhccccceeeeecccceeeeceecccchhhhhhhHHHHHhCCCcchhhcccCCCCccchhHHH
Q 014938 255 LAAINTTFSHIEEGVRSLLTDRNKLVMTVGGATALAAGIYTTREGARVTWGYVNRILGQPSLIRESSIGKFPWSGLLSQA 334 (415)
Q Consensus 255 le~ik~~~~~lg~gl~all~D~~klv~~v~g~t~Lavgvytak~~~~v~~~~ve~~Lg~pslvRetsr~~~p~~~~~~~~ 334 (415)
+..|+...-++|..+... |.+.-++... ++ +-|- -.+++.+++-|-+|+..=.-.+-+--..+.+...
T Consensus 69 vkriqsvplvigqfle~v--dqnt~ivgst--tg---sny~-----vrilstidrellkps~svalhrhsnalvdvlppe 136 (408)
T KOG0727|consen 69 VKRIQSVPLVIGQFLEAV--DQNTAIVGST--TG---SNYY-----VRILSTIDRELLKPSASVALHRHSNALVDVLPPE 136 (408)
T ss_pred HHHHhccchHHHHHHHhh--hccCceeecc--cC---CceE-----EeehhhhhHHHcCCccchhhhhcccceeeccCCc
Confidence 446788888899888888 5554333221 11 1111 1234455655555654211111111001111111
Q ss_pred HHHHhhhc-ccCCCCCCccccCCCccccCChhHHHHHHHHHHHHHhh-hhhcCCCccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 335 MNKVIRNK-TSAGTAGPVEAIKNNGDIILHPSLQRRIQHLAKATANT-KIHQAPFRNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 335 ~~~~~~~~-s~~~~~~~~~~~~~~ddvv~~~~l~~~l~~l~~~~~~~-k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
.++.+.++ .+..|.+.+.+..++|-. ..++.+.++..+.+.... ..+..|++|||||||||||||||++++|++..
T Consensus 137 adssi~ml~~~ekpdvsy~diggld~q--kqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~ 214 (408)
T KOG0727|consen 137 ADSSISMLGPDEKPDVSYADIGGLDVQ--KQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTT 214 (408)
T ss_pred ccccccccCCCCCCCccccccccchhh--HHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccc
Confidence 11111111 122244444444444411 244555555555555544 46679999999999999999999999998753
No 7
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.29 E-value=2.4e-12 Score=123.33 Aligned_cols=64 Identities=30% Similarity=0.426 Sum_probs=57.1
Q ss_pred ccccCCCccccCChhHHHHHHHHHHHHHhhhhhcCC-CccEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 351 VEAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAP-FRNMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 351 ~~~~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p-~r~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
..+...||||||+.+.+....-+.....+....+.+ ++||||||||||||||+|++||++...|
T Consensus 114 ~~~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp 178 (368)
T COG1223 114 IISDITLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVP 178 (368)
T ss_pred hhccccHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCc
Confidence 345679999999999999998888888888877765 7999999999999999999999998876
No 8
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=1.9e-11 Score=116.73 Aligned_cols=136 Identities=24% Similarity=0.336 Sum_probs=95.4
Q ss_pred HHhhhhhhhhhHHHHHHhhccccceeeee--cc--cceee--eceecccchhhhhhhH----HHHHhCCCcchhhcccCC
Q 014938 255 LAAINTTFSHIEEGVRSLLTDRNKLVMTV--GG--ATALA--AGIYTTREGARVTWGY----VNRILGQPSLIRESSIGK 324 (415)
Q Consensus 255 le~ik~~~~~lg~gl~all~D~~klv~~v--~g--~t~La--vgvytak~~~~v~~~~----ve~~Lg~pslvRetsr~~ 324 (415)
+..++..++++|...+.+ ++.++++.+ .| ++.+. +.+....++++|+++. ++.+|+....
T Consensus 61 l~~lqe~gsyvgev~k~m--~k~kVLVKvhpegKyvvdv~k~i~i~~~~~~~rVaLR~dsY~lhkiLpnKvD-------- 130 (404)
T KOG0728|consen 61 LQLLQEPGSYVGEVVKAM--GKKKVLVKVHPEGKYVVDVDKNIDISDVTPSSRVALRNDSYTLHKILPNKVD-------- 130 (404)
T ss_pred HHHHhcCcchHHHHHHhc--CcceEEEEEcCCCcEEEeccCCCcHhhcCCcceEEEeccchHHHHhcccccc--------
Confidence 668899999999999988 888888887 22 34444 6667777888877643 4566652211
Q ss_pred CCccchhHHHHHHHhhhcccCCCCCCccccCCCccccCChhHHHHHHHHHHHHHhhh-hhcCCCccEEEecCCCCcHHHH
Q 014938 325 FPWSGLLSQAMNKVIRNKTSAGTAGPVEAIKNNGDIILHPSLQRRIQHLAKATANTK-IHQAPFRNMLFYGPPGTGKTMV 403 (415)
Q Consensus 325 ~p~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ddvv~~~~l~~~l~~l~~~~~~~k-~~~~p~r~vLl~GPPGTGKT~l 403 (415)
| +-+. ++..+.|...+.-..++|..| .++++.++....+...+. .+...+++||||||||||||++
T Consensus 131 -p----LVsL------MmVeKvPDStYeMiGgLd~QI--keIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLl 197 (404)
T KOG0728|consen 131 -P----LVSL------MMVEKVPDSTYEMIGGLDKQI--KEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLL 197 (404)
T ss_pred -h----hhHH------HhhhhCCccHHHHhccHHHHH--HHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHH
Confidence 1 1111 112334666666667777666 677777777777777665 4456789999999999999999
Q ss_pred HHHHHHHhCC
Q 014938 404 AREIARKSVW 413 (415)
Q Consensus 404 AkaLA~~lg~ 413 (415)
|+++|++..+
T Consensus 198 araVahht~c 207 (404)
T KOG0728|consen 198 ARAVAHHTDC 207 (404)
T ss_pred HHHHHhhcce
Confidence 9999998764
No 9
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=2.8e-12 Score=124.49 Aligned_cols=142 Identities=15% Similarity=0.273 Sum_probs=88.9
Q ss_pred hHHHHHhhhhhhhhhHHHHHHhhccccceeeeecc---cceee--eceecccchhhhhhhHH-HHHhCCCcchhhcccCC
Q 014938 251 REKWLAAINTTFSHIEEGVRSLLTDRNKLVMTVGG---ATALA--AGIYTTREGARVTWGYV-NRILGQPSLIRESSIGK 324 (415)
Q Consensus 251 r~~~le~ik~~~~~lg~gl~all~D~~klv~~v~g---~t~La--vgvytak~~~~v~~~~v-e~~Lg~pslvRetsr~~ 324 (415)
+...++++..+...+|. +..+++|...+|++.+| ++.|- +..-...+|+.|..++- ..++|
T Consensus 95 ~r~~vd~lRGtPmsvg~-leEiidd~haivst~~g~e~Yv~IlSfVdKdlLepgcsvll~~k~~avvG------------ 161 (440)
T KOG0726|consen 95 ERSKVDDLRGTPMSVGT-LEEIIDDNHAIVSTSVGSEYYVSILSFVDKDLLEPGCSVLLNHKVHAVVG------------ 161 (440)
T ss_pred HHhHHHhhcCCcccccc-HHHHhcCCceEEecccCchheeeeeeeccHhhcCCCCeeeeccccceEEE------------
Confidence 33667788888888887 56666665555555433 22221 33444566666655542 23333
Q ss_pred CCccchhHHHHHHHhhhc-ccCCCCCCccccCCCccccCChhHHHHHHHHHHHHHhh-hhhcCCCccEEEecCCCCcHHH
Q 014938 325 FPWSGLLSQAMNKVIRNK-TSAGTAGPVEAIKNNGDIILHPSLQRRIQHLAKATANT-KIHQAPFRNMLFYGPPGTGKTM 402 (415)
Q Consensus 325 ~p~~~~~~~~~~~~~~~~-s~~~~~~~~~~~~~~ddvv~~~~l~~~l~~l~~~~~~~-k~~~~p~r~vLl~GPPGTGKT~ 402 (415)
.+.+.++.++..+ -+++|...+.+..+++..| .++++.++..+.+..++ ..+..|+++|+|||+||||||+
T Consensus 162 -----vL~d~~dpmv~vmK~eKaP~Ety~diGGle~Qi--QEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTL 234 (440)
T KOG0726|consen 162 -----VLQDDTDPMVSVMKVEKAPQETYADIGGLESQI--QEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTL 234 (440)
T ss_pred -----EeccCCCccceeeecccCchhhhcccccHHHHH--HHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhH
Confidence 2222222222222 3555666666666666655 66666676666676665 4666899999999999999999
Q ss_pred HHHHHHHHhC
Q 014938 403 VAREIARKSV 412 (415)
Q Consensus 403 lAkaLA~~lg 412 (415)
||+++|+...
T Consensus 235 LAKAVANqTS 244 (440)
T KOG0726|consen 235 LAKAVANQTS 244 (440)
T ss_pred HHHHHhcccc
Confidence 9999998754
No 10
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.16 E-value=1.2e-09 Score=122.52 Aligned_cols=204 Identities=17% Similarity=0.189 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHHHHHHHhchHHHHhhHhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 014938 155 DELARKRLQTDHEAQRRHNTELVKMQEESSIRKEQARRSTE---EQIQAQQRLTEKERAEIERETIRVKAMAEAEGRAHE 231 (415)
Q Consensus 155 D~L~rkr~q~ele~~~~~~e~~~~~qees~~rqE~~r~~~e---~~~~~~r~~~e~e~~~l~~~~~~~k~~ae~~~r~~~ 231 (415)
+.|+++..+.+.+.+.+.++. +..+..|.+.++.+.+ .++..++.+|..++.++....+....+.+.+.++++
T Consensus 413 ~rLer~l~~L~~E~e~l~~e~----~~~~~~~~~~l~~~l~~lq~e~~~L~eq~k~~k~el~~~~~~~~ele~l~~kie~ 488 (857)
T PRK10865 413 DRLDRRIIQLKLEQQALMKES----DEASKKRLDMLNEELSDKERQYSELEEEWKAEKASLSGTQTIKAELEQAKIAIEQ 488 (857)
T ss_pred HHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 445555555555555554432 1222334444443322 255567777877777776666666666666777777
Q ss_pred HHhhhhhHHHHHHHHHhhhhHHHHHhhhhhhhhhHHHHHHhhccccceeeeecccceee--eceecccchhhhhhhHHHH
Q 014938 232 AKLTEDHNRRMLIERINGEREKWLAAINTTFSHIEEGVRSLLTDRNKLVMTVGGATALA--AGIYTTREGARVTWGYVNR 309 (415)
Q Consensus 232 ~r~n~dl~le~i~~ka~e~r~~~le~ik~~~~~lg~gl~all~D~~klv~~v~g~t~La--vgvytak~~~~v~~~~ve~ 309 (415)
...+.|. ..+.+..+..++.+......... .......++...++...|+ ++.||..+..++.....+.
T Consensus 489 a~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~v~~~~i~~vv~~~tgip~~~~~~~~~~~ 558 (857)
T PRK10865 489 ARRVGDL------ARMSELQYGKIPELEKQLAAATQ----LEGKTMRLLRNKVTDAEIAEVLARWTGIPVSRMLESEREK 558 (857)
T ss_pred HHhhhhh------hhHHHhhhhhhHHHHHHHHHHHh----hhccccccccCccCHHHHHHHHHHHHCCCchhhhhhHHHH
Confidence 7777776 45556666666665443222111 1001123333333333333 4444444444333332222
Q ss_pred HhCCCcchhhcccCCCCccchhHHHHHHHhhhcccCCCCCCccccCCCccccCChhHHHHHHHHHHH-HHhhhhhcCCCc
Q 014938 310 ILGQPSLIRESSIGKFPWSGLLSQAMNKVIRNKTSAGTAGPVEAIKNNGDIILHPSLQRRIQHLAKA-TANTKIHQAPFR 388 (415)
Q Consensus 310 ~Lg~pslvRetsr~~~p~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ddvv~~~~l~~~l~~l~~~-~~~~k~~~~p~r 388 (415)
++. +. ..-+..|+|++.....|...+.. .........|..
T Consensus 559 l~~------------------l~---------------------~~l~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~ 599 (857)
T PRK10865 559 LLR------------------ME---------------------QELHHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIG 599 (857)
T ss_pred HHH------------------HH---------------------HHhCCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCc
Confidence 222 11 11344588988877755444332 222223344556
Q ss_pred cEEEecCCCCcHHHHHHHHHHHh
Q 014938 389 NMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 389 ~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
.+||+||||||||++|++|+..+
T Consensus 600 ~~Lf~Gp~G~GKT~lA~aLa~~l 622 (857)
T PRK10865 600 SFLFLGPTGVGKTELCKALANFM 622 (857)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 79999999999999999999876
No 11
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.13 E-value=3.4e-10 Score=116.62 Aligned_cols=64 Identities=30% Similarity=0.393 Sum_probs=51.1
Q ss_pred ccccCCCccccCChhHHHHHHHHHHHH----Hhhh-hhcCCCccEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 351 VEAIKNNGDIILHPSLQRRIQHLAKAT----ANTK-IHQAPFRNMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 351 ~~~~~~~ddvv~~~~l~~~l~~l~~~~----~~~k-~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
..+...|+||+|.+..+..|.....+. ...+ .+..|+++||||||||||||++|++||++++.+
T Consensus 138 ~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~ 206 (398)
T PTZ00454 138 EKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTAT 206 (398)
T ss_pred CCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 456789999999999888877766542 2222 334678999999999999999999999998864
No 12
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.09 E-value=1.4e-10 Score=109.89 Aligned_cols=59 Identities=34% Similarity=0.476 Sum_probs=42.6
Q ss_pred ccCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 353 ~~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
.+..|+|+|||+++...+.-+..... ..+.+..|+|||||||||||+||..||+++|.+
T Consensus 19 RP~~L~efiGQ~~l~~~l~i~i~aa~---~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~ 77 (233)
T PF05496_consen 19 RPKSLDEFIGQEHLKGNLKILIRAAK---KRGEALDHMLFYGPPGLGKTTLARIIANELGVN 77 (233)
T ss_dssp S-SSCCCS-S-HHHHHHHHHHHHHHH---CTTS---EEEEESSTTSSHHHHHHHHHHHCT--
T ss_pred CCCCHHHccCcHHHHhhhHHHHHHHH---hcCCCcceEEEECCCccchhHHHHHHHhccCCC
Confidence 46699999999999998776655432 234567899999999999999999999999875
No 13
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=2e-10 Score=121.67 Aligned_cols=65 Identities=26% Similarity=0.376 Sum_probs=53.8
Q ss_pred CccccCCCccccCChhHHHHHHHHHHH----HHhh-hhhcCCCccEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 350 PVEAIKNNGDIILHPSLQRRIQHLAKA----TANT-KIHQAPFRNMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 350 ~~~~~~~~ddvv~~~~l~~~l~~l~~~----~~~~-k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
...+..+|+||.|.++++..|+....| ...+ +.+..|+++||||||||||||++||+||++++++
T Consensus 426 ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~n 495 (693)
T KOG0730|consen 426 VEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMN 495 (693)
T ss_pred ccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCC
Confidence 456788999999999999877655554 3333 4555899999999999999999999999999975
No 14
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=3.2e-10 Score=119.08 Aligned_cols=63 Identities=27% Similarity=0.248 Sum_probs=52.7
Q ss_pred cccCCCccccCChhHHHHHHHHHHHHHhh----hhhcCCCccEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 352 EAIKNNGDIILHPSLQRRIQHLAKATANT----KIHQAPFRNMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 352 ~~~~~~ddvv~~~~l~~~l~~l~~~~~~~----k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
.+...|.|+.|.+.....|..++.+..+. ..+-.|++|||||||||||||+||.+||+++|+|
T Consensus 184 ~snv~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vP 250 (802)
T KOG0733|consen 184 ESNVSFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVP 250 (802)
T ss_pred CCCcchhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCc
Confidence 33568999999998888777777764443 3455899999999999999999999999999998
No 15
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=3.5e-10 Score=122.63 Aligned_cols=64 Identities=23% Similarity=0.254 Sum_probs=57.2
Q ss_pred ccccCCCccccCChhHHHHHHHHHHHHHhhhhh----cCCCccEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 351 VEAIKNNGDIILHPSLQRRIQHLAKATANTKIH----QAPFRNMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 351 ~~~~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~----~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
......|+||.|.++.+..|..+..+..|.+.+ -.+++++||+||||||||+||||+|.+.|+|
T Consensus 304 ~~t~V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVP 371 (774)
T KOG0731|consen 304 GNTGVKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVP 371 (774)
T ss_pred CCCCCccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCc
Confidence 345689999999999999999999998876544 4779999999999999999999999999998
No 16
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=6.2e-10 Score=116.93 Aligned_cols=64 Identities=20% Similarity=0.206 Sum_probs=52.5
Q ss_pred ccccCCCccccCChhHHHHHHHHHHHH----Hhh-hhhcCCCccEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 351 VEAIKNNGDIILHPSLQRRIQHLAKAT----ANT-KIHQAPFRNMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 351 ~~~~~~~ddvv~~~~l~~~l~~l~~~~----~~~-k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
..+..+|+||.+..++...|.+.+.+. ..+ ..+..++.|||||||||||||+|||++|++.|+.
T Consensus 504 tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~N 572 (802)
T KOG0733|consen 504 TVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGAN 572 (802)
T ss_pred ecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCc
Confidence 356889999999999988887766652 223 3455778999999999999999999999999974
No 17
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=6.4e-10 Score=113.86 Aligned_cols=65 Identities=25% Similarity=0.355 Sum_probs=53.0
Q ss_pred CccccCCCccccCChhHHH-HHHHHHHHH----HhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 350 PVEAIKNNGDIILHPSLQR-RIQHLAKAT----ANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 350 ~~~~~~~~ddvv~~~~l~~-~l~~l~~~~----~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
....+.+|+.++..+++++ .+.++..+. ++.+.+..+.||.|||||||||||+|.-|||+++++|
T Consensus 193 ~f~HpstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~yd 262 (457)
T KOG0743|consen 193 GFPHPSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYD 262 (457)
T ss_pred CCCCCCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCc
Confidence 3455589999999999998 666666553 3345666778999999999999999999999999986
No 18
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=98.95 E-value=1.7e-09 Score=112.60 Aligned_cols=64 Identities=25% Similarity=0.401 Sum_probs=48.7
Q ss_pred ccccCCCccccCChhHHHHHHHHHHHH----Hhhh-hhcCCCccEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 351 VEAIKNNGDIILHPSLQRRIQHLAKAT----ANTK-IHQAPFRNMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 351 ~~~~~~~ddvv~~~~l~~~l~~l~~~~----~~~k-~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
..+..+|+||.|.+.....|..+.... ...+ .+..|+++||||||||||||++|++||++++.+
T Consensus 176 ~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~ 244 (438)
T PTZ00361 176 KAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSAT 244 (438)
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCC
Confidence 345678999988888777776665432 2222 334678999999999999999999999988754
No 19
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.95 E-value=3.5e-08 Score=110.90 Aligned_cols=54 Identities=22% Similarity=0.377 Sum_probs=39.3
Q ss_pred cccCChhHHHHHHHHH-HHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 359 DIILHPSLQRRIQHLA-KATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 359 dvv~~~~l~~~l~~l~-~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
.|+|++...+.|...+ ...........|...+||+||||||||++|++||..+.
T Consensus 566 ~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~ 620 (852)
T TIGR03346 566 RVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLF 620 (852)
T ss_pred ccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 3888888888544433 33333333445667899999999999999999998763
No 20
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=1.3e-09 Score=109.56 Aligned_cols=63 Identities=24% Similarity=0.314 Sum_probs=52.0
Q ss_pred ccccCCCccccCChhHHHHHHHHHHH----HHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhCC
Q 014938 351 VEAIKNNGDIILHPSLQRRIQHLAKA----TANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSVW 413 (415)
Q Consensus 351 ~~~~~~~ddvv~~~~l~~~l~~l~~~----~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~ 413 (415)
..+...|+||.|..+.++.|...... ..+++....|.++|||+||||||||+|||+||.++|.
T Consensus 205 ~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~t 271 (491)
T KOG0738|consen 205 RNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECGT 271 (491)
T ss_pred cCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhhcC
Confidence 34567999999999998877766554 4445555689999999999999999999999999984
No 21
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.89 E-value=8e-09 Score=106.22 Aligned_cols=64 Identities=25% Similarity=0.361 Sum_probs=49.6
Q ss_pred ccccCCCccccCChhHHHHHHHHHHHH----Hhh-hhhcCCCccEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 351 VEAIKNNGDIILHPSLQRRIQHLAKAT----ANT-KIHQAPFRNMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 351 ~~~~~~~ddvv~~~~l~~~l~~l~~~~----~~~-k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
..+...|+||+|.++..+.|....... ... ..+..|+++||||||||||||++|+++|++++.+
T Consensus 124 ~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~ 192 (389)
T PRK03992 124 ESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNAT 192 (389)
T ss_pred CCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCC
Confidence 345678999999998888776665432 222 2344678999999999999999999999998864
No 22
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=2.3e-09 Score=111.24 Aligned_cols=62 Identities=23% Similarity=0.331 Sum_probs=54.4
Q ss_pred ccCCCccccCChhHHHHHHHHHHHHHh----hhhhcCCCccEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 353 AIKNNGDIILHPSLQRRIQHLAKATAN----TKIHQAPFRNMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 353 ~~~~~ddvv~~~~l~~~l~~l~~~~~~----~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
....|+||.|.++.+..|+.+..+..+ ++.++.-+++|||.||||||||+||+++|.+.|+|
T Consensus 299 ~nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VP 364 (752)
T KOG0734|consen 299 KNVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVP 364 (752)
T ss_pred cccccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCC
Confidence 356799999999999999988887554 45666778999999999999999999999999988
No 23
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=98.84 E-value=4.3e-09 Score=111.35 Aligned_cols=63 Identities=21% Similarity=0.294 Sum_probs=52.3
Q ss_pred cccCCCccccCChhHHHHHHHHHHHHHhhh----hhcCCCccEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 352 EAIKNNGDIILHPSLQRRIQHLAKATANTK----IHQAPFRNMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 352 ~~~~~~ddvv~~~~l~~~l~~l~~~~~~~k----~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
.+...|+||+|.++++..+..+..+..+.. .+..+++|+|||||||||||++|++||.++++|
T Consensus 49 ~~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~ 115 (495)
T TIGR01241 49 KPKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVP 115 (495)
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 567799999999999998887777544322 235678999999999999999999999999876
No 24
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=2.9e-09 Score=114.34 Aligned_cols=64 Identities=23% Similarity=0.302 Sum_probs=49.4
Q ss_pred CccccCCCccccCChhHHHHHHHHHHH----HHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhCC
Q 014938 350 PVEAIKNNGDIILHPSLQRRIQHLAKA----TANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSVW 413 (415)
Q Consensus 350 ~~~~~~~~ddvv~~~~l~~~l~~l~~~----~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~ 413 (415)
+..+...||||.|.++++..|.+-+.. ......+-.+..|||||||||||||++|||+|.++.+
T Consensus 664 PKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL 731 (953)
T KOG0736|consen 664 PKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSL 731 (953)
T ss_pred CCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhcee
Confidence 345678999999999999866555443 2333333355679999999999999999999999876
No 25
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.83 E-value=4.4e-09 Score=102.25 Aligned_cols=59 Identities=29% Similarity=0.415 Sum_probs=50.8
Q ss_pred ccCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 353 ~~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
.+..|+++||++.+++.+.-++.+. +..+.+..|+|||||||.|||+||..+|+++|..
T Consensus 21 RP~~l~efiGQ~~vk~~L~ifI~AA---k~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn 79 (332)
T COG2255 21 RPKTLDEFIGQEKVKEQLQIFIKAA---KKRGEALDHVLLFGPPGLGKTTLAHIIANELGVN 79 (332)
T ss_pred CcccHHHhcChHHHHHHHHHHHHHH---HhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCC
Confidence 3678999999999999888776654 3456678999999999999999999999999864
No 26
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=3.8e-09 Score=105.80 Aligned_cols=64 Identities=31% Similarity=0.378 Sum_probs=50.8
Q ss_pred ccccCCCccccCChhHHHHHHHHHHH----HHhhhhhc--CCCccEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 351 VEAIKNNGDIILHPSLQRRIQHLAKA----TANTKIHQ--APFRNMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 351 ~~~~~~~ddvv~~~~l~~~l~~l~~~----~~~~k~~~--~p~r~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
.....+|+|+.|.+.++..+..+... ..++..++ .|++|||||||||||||++|+++|.+.|..
T Consensus 85 ~~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~ 154 (386)
T KOG0737|consen 85 SEIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGAN 154 (386)
T ss_pred hhceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCC
Confidence 45577899999999988887777664 23332222 688999999999999999999999999864
No 27
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=2.6e-08 Score=95.90 Aligned_cols=62 Identities=26% Similarity=0.385 Sum_probs=41.2
Q ss_pred ccccCCCccccCChhHHH-HHHHHHH---HH-HhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 351 VEAIKNNGDIILHPSLQR-RIQHLAK---AT-ANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 351 ~~~~~~~ddvv~~~~l~~-~l~~l~~---~~-~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
..+...++||.|.+.... .++.+.. +. ...+.+..|++++|+|||||||||++|++.|.+.+
T Consensus 164 ekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~ 230 (424)
T KOG0652|consen 164 EKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTN 230 (424)
T ss_pred cCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhcc
Confidence 345556666665443333 2222222 22 22346678999999999999999999999997654
No 28
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=2.6e-09 Score=104.83 Aligned_cols=136 Identities=21% Similarity=0.283 Sum_probs=80.7
Q ss_pred hHHHHHhhhhhhhhhHHHHHHhhccccceeeeecccceeeecee------cccchhhhhhhHHH----HHhCCCcchhhc
Q 014938 251 REKWLAAINTTFSHIEEGVRSLLTDRNKLVMTVGGATALAAGIY------TTREGARVTWGYVN----RILGQPSLIRES 320 (415)
Q Consensus 251 r~~~le~ik~~~~~lg~gl~all~D~~klv~~v~g~t~Lavgvy------tak~~~~v~~~~ve----~~Lg~pslvRet 320 (415)
-+..+.+++..+..+|+.++.+ +.++|++.........+|+. ....|++++.+... +.|+
T Consensus 43 send~kslqsvg~~~gevlk~l--~~~~~iVK~s~Gpryvvg~~~~~D~~~i~~G~rv~ldittltIm~~lp-------- 112 (388)
T KOG0651|consen 43 SENDLKSLQSVGQIIGEVLKQL--EDEKFIVKASSGPRYVVGCRRSVDKEKIARGTRVVLDITTLTIMRGLP-------- 112 (388)
T ss_pred ccchHHHhhhcCchhHHHHhhc--cccceEeecCCCCcEEEEcccccchhhhccCceeeeeeeeeehhcccc--------
Confidence 4455678888888888888877 66788887622111112222 23455555554322 3333
Q ss_pred ccCCCCccchhHHHHHHHhhhcccCCCCCCccccCCCccccCChhHHHHHHH----HHHHHHhh-hhhcCCCccEEEecC
Q 014938 321 SIGKFPWSGLLSQAMNKVIRNKTSAGTAGPVEAIKNNGDIILHPSLQRRIQH----LAKATANT-KIHQAPFRNMLFYGP 395 (415)
Q Consensus 321 sr~~~p~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ddvv~~~~l~~~l~~----l~~~~~~~-k~~~~p~r~vLl~GP 395 (415)
+..+ ++++|+...|. ..+|+++.|.-.....+.+ .+.-.+.+ +.+..||.+++||||
T Consensus 113 ------------revd-~vy~m~~e~~~-----~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~Gp 174 (388)
T KOG0651|consen 113 ------------REVD-LVYNMSHEDPR-----NISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGP 174 (388)
T ss_pred ------------hHHH-HHHHhhhcCcc-----ccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCC
Confidence 2223 34555433322 2356655554443333322 22223333 346789999999999
Q ss_pred CCCcHHHHHHHHHHHhCCC
Q 014938 396 PGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 396 PGTGKT~lAkaLA~~lg~~ 414 (415)
||||||++|++++..+|+.
T Consensus 175 pGtGKTlla~~Vaa~mg~n 193 (388)
T KOG0651|consen 175 PGTGKTLLARAVAATMGVN 193 (388)
T ss_pred CCCchhHHHHHHHHhcCCc
Confidence 9999999999999999874
No 29
>CHL00195 ycf46 Ycf46; Provisional
Probab=98.80 E-value=6.4e-09 Score=109.70 Aligned_cols=62 Identities=21% Similarity=0.210 Sum_probs=48.1
Q ss_pred ccCCCccccCChhHHHHHHHHHHHH-Hhhh-hhcCCCccEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 353 AIKNNGDIILHPSLQRRIQHLAKAT-ANTK-IHQAPFRNMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 353 ~~~~~ddvv~~~~l~~~l~~l~~~~-~~~k-~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
+..+|+||.|.+.++..+....... ...+ .+..++++||||||||||||++|++||.++|+|
T Consensus 223 ~~~~~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~ 286 (489)
T CHL00195 223 VNEKISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLP 286 (489)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 4568999999999888776543322 1122 233568999999999999999999999999986
No 30
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.76 E-value=2.1e-08 Score=102.06 Aligned_cols=64 Identities=27% Similarity=0.363 Sum_probs=49.0
Q ss_pred ccccCCCccccCChhHHHHHHHHHHHHH----hh-hhhcCCCccEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 351 VEAIKNNGDIILHPSLQRRIQHLAKATA----NT-KIHQAPFRNMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 351 ~~~~~~~ddvv~~~~l~~~l~~l~~~~~----~~-k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
..+...|+|++|.+...+.+........ .. ..+..|++++|||||||||||++|+++|++++.+
T Consensus 115 ~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~ 183 (364)
T TIGR01242 115 ERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNAT 183 (364)
T ss_pred cCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCC
Confidence 3466789999999988887766654321 11 2234678999999999999999999999988754
No 31
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=98.74 E-value=1.2e-08 Score=107.93 Aligned_cols=63 Identities=25% Similarity=0.336 Sum_probs=49.1
Q ss_pred cccCCCccccCChhHHHHHHHHHHH----HHhhh-hhcCCCccEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 352 EAIKNNGDIILHPSLQRRIQHLAKA----TANTK-IHQAPFRNMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 352 ~~~~~~ddvv~~~~l~~~l~~l~~~----~~~~k-~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
.+...|+||+|.+...+.+...+.. ....+ .+..|++++|||||||||||++|+++|++++.+
T Consensus 176 ~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~ 243 (512)
T TIGR03689 176 VPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQR 243 (512)
T ss_pred CCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccc
Confidence 4567899999888888877666543 22222 334678999999999999999999999998754
No 32
>CHL00176 ftsH cell division protein; Validated
Probab=98.73 E-value=1.5e-08 Score=110.00 Aligned_cols=63 Identities=22% Similarity=0.267 Sum_probs=53.2
Q ss_pred cccCCCccccCChhHHHHHHHHHHHHHhhhh----hcCCCccEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 352 EAIKNNGDIILHPSLQRRIQHLAKATANTKI----HQAPFRNMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 352 ~~~~~~ddvv~~~~l~~~l~~l~~~~~~~k~----~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
.....|+||+|.++.+..+..+......... +..++++||||||||||||++|++||.++|+|
T Consensus 177 ~~~~~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p 243 (638)
T CHL00176 177 DTGITFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVP 243 (638)
T ss_pred CCCCCHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4567999999999999988888776554433 44568899999999999999999999999876
No 33
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=1.3e-08 Score=98.29 Aligned_cols=63 Identities=24% Similarity=0.384 Sum_probs=49.8
Q ss_pred ccccCCCccccCChhHHHHHHHHHHH----H-HhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhCC
Q 014938 351 VEAIKNNGDIILHPSLQRRIQHLAKA----T-ANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSVW 413 (415)
Q Consensus 351 ~~~~~~~ddvv~~~~l~~~l~~l~~~----~-~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~ 413 (415)
.++..++.||.|..+..+.++..... . ...+.+..|+++||||||||||||++|+++|+..+.
T Consensus 170 ekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtda 237 (435)
T KOG0729|consen 170 EKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDA 237 (435)
T ss_pred cCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCc
Confidence 46677888888888777766666554 2 234567799999999999999999999999987653
No 34
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.72 E-value=2.5e-07 Score=103.81 Aligned_cols=52 Identities=27% Similarity=0.358 Sum_probs=38.5
Q ss_pred ccCChhHHHHH-HHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 360 IILHPSLQRRI-QHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 360 vv~~~~l~~~l-~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
|+|+++..+.+ ..+..+.........|...+||+||||||||++|++||..+
T Consensus 568 v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l 620 (852)
T TIGR03345 568 VIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELL 620 (852)
T ss_pred EcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 88999888844 44444433333334555568999999999999999999887
No 35
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=98.71 E-value=3.4e-07 Score=102.03 Aligned_cols=54 Identities=22% Similarity=0.214 Sum_probs=40.1
Q ss_pred cccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 359 DIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 359 dvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
+++|++.+++.|..++........ ....++|||||||||||++|++||..++.+
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~~--~~~~~lll~GppG~GKT~lAk~iA~~l~~~ 374 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRGK--MKGPILCLVGPPGVGKTSLGKSIAKALNRK 374 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhcC--CCCceEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 377888888877665554332211 223479999999999999999999999865
No 36
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=2e-08 Score=106.06 Aligned_cols=65 Identities=25% Similarity=0.306 Sum_probs=51.1
Q ss_pred CccccCCCccccCChhHHHHHHHHHHHHHhhhh-----hcCCCccEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 350 PVEAIKNNGDIILHPSLQRRIQHLAKATANTKI-----HQAPFRNMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 350 ~~~~~~~~ddvv~~~~l~~~l~~l~~~~~~~k~-----~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
...+...|+++.|....+..+.....+...... +..|+++||||||||||||++|+++|.+++.+
T Consensus 234 ~~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~ 303 (494)
T COG0464 234 FEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSR 303 (494)
T ss_pred cCCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCe
Confidence 456678999999888888877776665433221 45678899999999999999999999988764
No 37
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.67 E-value=2.6e-08 Score=99.98 Aligned_cols=58 Identities=26% Similarity=0.399 Sum_probs=47.3
Q ss_pred cCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 354 ~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
+..|++++|++++...+..++.... ..+.+++++|||||||||||++|+++|+++|.+
T Consensus 21 P~~~~~~vG~~~~~~~l~~~l~~~~---~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~ 78 (328)
T PRK00080 21 PKSLDEFIGQEKVKENLKIFIEAAK---KRGEALDHVLLYGPPGLGKTTLANIIANEMGVN 78 (328)
T ss_pred cCCHHHhcCcHHHHHHHHHHHHHHH---hcCCCCCcEEEECCCCccHHHHHHHHHHHhCCC
Confidence 4589999999999888776654422 224567899999999999999999999998864
No 38
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.66 E-value=2.2e-08 Score=98.24 Aligned_cols=53 Identities=28% Similarity=0.394 Sum_probs=42.5
Q ss_pred ccCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhCC
Q 014938 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSVW 413 (415)
Q Consensus 353 ~~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~ 413 (415)
.+..|+++++++.++..|..-+.. .. ..|+|||||||||||+.|.++|.++..
T Consensus 31 rPkt~de~~gQe~vV~~L~~a~~~------~~--lp~~LFyGPpGTGKTStalafar~L~~ 83 (346)
T KOG0989|consen 31 RPKTFDELAGQEHVVQVLKNALLR------RI--LPHYLFYGPPGTGKTSTALAFARALNC 83 (346)
T ss_pred CCCcHHhhcchHHHHHHHHHHHhh------cC--CceEEeeCCCCCcHhHHHHHHHHHhcC
Confidence 466899999999888866544322 12 359999999999999999999999875
No 39
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.64 E-value=1.3e-08 Score=103.14 Aligned_cols=58 Identities=29% Similarity=0.419 Sum_probs=43.1
Q ss_pred cccCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 352 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 352 ~~~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
..+.+|++|||+..+...-.-+.+... .....+++||||||||||++|+.||+.++.+
T Consensus 18 mRP~~lde~vGQ~HLlg~~~~lrr~v~-----~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~ 75 (436)
T COG2256 18 LRPKSLDEVVGQEHLLGEGKPLRRAVE-----AGHLHSMILWGPPGTGKTTLARLIAGTTNAA 75 (436)
T ss_pred hCCCCHHHhcChHhhhCCCchHHHHHh-----cCCCceeEEECCCCCCHHHHHHHHHHhhCCc
Confidence 346799999999998753222222222 1235699999999999999999999998864
No 40
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=3e-08 Score=97.06 Aligned_cols=64 Identities=22% Similarity=0.358 Sum_probs=50.9
Q ss_pred CCccccCCCccccCChhHHHHHHHHHHH----HHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 349 GPVEAIKNNGDIILHPSLQRRIQHLAKA----TANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 349 ~~~~~~~~~ddvv~~~~l~~~l~~l~~~----~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
+..++...|+||.|.+..++.|...... ...+.....|.++|||||||||||+.||+++|.+.+
T Consensus 124 v~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAn 191 (439)
T KOG0739|consen 124 VREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEAN 191 (439)
T ss_pred hccCCCCchhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcC
Confidence 3456778999999999988877765543 233334457899999999999999999999998876
No 41
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.62 E-value=3.5e-08 Score=95.85 Aligned_cols=56 Identities=23% Similarity=0.274 Sum_probs=42.9
Q ss_pred CCccccCChhHHHHHHHHHHHHHhhh----hhc---CCCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 356 NNGDIILHPSLQRRIQHLAKATANTK----IHQ---APFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 356 ~~ddvv~~~~l~~~l~~l~~~~~~~k----~~~---~p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
.+++++|.+.++..|..+..+..... .+. ....|+|||||||||||++|+++|+.+
T Consensus 4 ~l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l 66 (261)
T TIGR02881 4 ELSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLF 66 (261)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHH
Confidence 35668999999999988877754322 111 224689999999999999999999864
No 42
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=98.60 E-value=5.1e-08 Score=107.94 Aligned_cols=63 Identities=25% Similarity=0.355 Sum_probs=50.6
Q ss_pred cccCCCccccCChhHHHHHHHHHHHHHh----h-hhhcCCCccEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 352 EAIKNNGDIILHPSLQRRIQHLAKATAN----T-KIHQAPFRNMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 352 ~~~~~~ddvv~~~~l~~~l~~l~~~~~~----~-k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
.+...|++++|.+.++..|.....+... . +.+..++++||||||||||||++|++||++++.+
T Consensus 447 ~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~ 514 (733)
T TIGR01243 447 VPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGAN 514 (733)
T ss_pred ccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 4567899999999999988777665221 1 2234678999999999999999999999999875
No 43
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=2.2e-07 Score=101.77 Aligned_cols=53 Identities=26% Similarity=0.394 Sum_probs=46.9
Q ss_pred ccCChhHHH-HHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 360 IILHPSLQR-RIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 360 vv~~~~l~~-~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
|+|+++... ....+..+..+.+..+.|..++||.||+|+|||.+|++||..+.
T Consensus 493 ViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lf 546 (786)
T COG0542 493 VIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALF 546 (786)
T ss_pred eeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhc
Confidence 899999988 66677777777788889999999999999999999999998875
No 44
>PRK04195 replication factor C large subunit; Provisional
Probab=98.58 E-value=6.4e-08 Score=102.19 Aligned_cols=58 Identities=26% Similarity=0.500 Sum_probs=47.6
Q ss_pred ccCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 353 ~~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
.+..|++++|++.....|..++.... .+.|++++|||||||||||++|++||+++|++
T Consensus 9 rP~~l~dlvg~~~~~~~l~~~l~~~~----~g~~~~~lLL~GppG~GKTtla~ala~el~~~ 66 (482)
T PRK04195 9 RPKTLSDVVGNEKAKEQLREWIESWL----KGKPKKALLLYGPPGVGKTSLAHALANDYGWE 66 (482)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHHHh----cCCCCCeEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 35689999999999987776665433 24557899999999999999999999999864
No 45
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=5.8e-08 Score=95.96 Aligned_cols=60 Identities=27% Similarity=0.305 Sum_probs=44.1
Q ss_pred cCCCccccCChhHHHHHHHHHHHHHhhh-hh-----cCCCccEEEecCCCCcHHHHHHHHHHHhCC
Q 014938 354 IKNNGDIILHPSLQRRIQHLAKATANTK-IH-----QAPFRNMLFYGPPGTGKTMVAREIARKSVW 413 (415)
Q Consensus 354 ~~~~ddvv~~~~l~~~l~~l~~~~~~~k-~~-----~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~ 413 (415)
..-|+.++....+++++..++....... .+ ...-|-||||||||||||+|||+||+.+.+
T Consensus 138 ~glWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSI 203 (423)
T KOG0744|consen 138 DGLWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSI 203 (423)
T ss_pred hhhHHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhhee
Confidence 3457777888888887777766543322 21 134567999999999999999999998754
No 46
>PLN03025 replication factor C subunit; Provisional
Probab=98.54 E-value=6.7e-08 Score=96.65 Aligned_cols=51 Identities=29% Similarity=0.444 Sum_probs=41.6
Q ss_pred ccCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 353 ~~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
.+..|+++++++++...|..+... + ...|+|||||||||||++|.++|+++
T Consensus 8 rP~~l~~~~g~~~~~~~L~~~~~~------~--~~~~lll~Gp~G~GKTtla~~la~~l 58 (319)
T PLN03025 8 RPTKLDDIVGNEDAVSRLQVIARD------G--NMPNLILSGPPGTGKTTSILALAHEL 58 (319)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHhc------C--CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 466899999999988877665432 1 23489999999999999999999987
No 47
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.54 E-value=9.1e-08 Score=100.72 Aligned_cols=54 Identities=28% Similarity=0.364 Sum_probs=43.4
Q ss_pred ccCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhCC
Q 014938 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSVW 413 (415)
Q Consensus 353 ~~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~ 413 (415)
.+..|++|+|++.+...|...+.. +..+.++|||||||||||++|+++|..++.
T Consensus 9 RP~~~~divGq~~i~~~L~~~i~~-------~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~ 62 (472)
T PRK14962 9 RPKTFSEVVGQDHVKKLIINALKK-------NSISHAYIFAGPRGTGKTTVARILAKSLNC 62 (472)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHc-------CCCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 356899999999987777654432 223456899999999999999999999875
No 48
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=8.4e-08 Score=102.46 Aligned_cols=64 Identities=23% Similarity=0.289 Sum_probs=55.4
Q ss_pred cccCCCccccCChhHHHHHHHHHHHHHhhhh----hcCCCccEEEecCCCCcHHHHHHHHHHHhCCCC
Q 014938 352 EAIKNNGDIILHPSLQRRIQHLAKATANTKI----HQAPFRNMLFYGPPGTGKTMVAREIARKSVWCS 415 (415)
Q Consensus 352 ~~~~~~ddvv~~~~l~~~l~~l~~~~~~~k~----~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~~~ 415 (415)
.....|.||.|.++.++.+..+.....+.++ +..-++++||+||||||||+||+++|.+.++|+
T Consensus 144 ~~~v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPF 211 (596)
T COG0465 144 QVKVTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPF 211 (596)
T ss_pred ccCcChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCc
Confidence 4568999999999999998888888765543 345689999999999999999999999999984
No 49
>CHL00181 cbbX CbbX; Provisional
Probab=98.52 E-value=1.2e-07 Score=93.88 Aligned_cols=53 Identities=30% Similarity=0.419 Sum_probs=40.5
Q ss_pred cccCChhHHHHHHHHHHHHHhhhh----hc---CCCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 359 DIILHPSLQRRIQHLAKATANTKI----HQ---APFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 359 dvv~~~~l~~~l~~l~~~~~~~k~----~~---~p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+++|.+.+++.|..+..+....+. +. .+..||||+||||||||++|++||..+
T Consensus 24 ~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~ 83 (287)
T CHL00181 24 ELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADIL 83 (287)
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 689999999988888766443221 11 234579999999999999999999864
No 50
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=3.2e-07 Score=98.35 Aligned_cols=60 Identities=27% Similarity=0.324 Sum_probs=48.6
Q ss_pred cCCCccccCChhHHHHHHHHHHHHHhh-hhh-c---CCCccEEEecCCCCcHHHHHHHHHHHhCC
Q 014938 354 IKNNGDIILHPSLQRRIQHLAKATANT-KIH-Q---APFRNMLFYGPPGTGKTMVAREIARKSVW 413 (415)
Q Consensus 354 ~~~~ddvv~~~~l~~~l~~l~~~~~~~-k~~-~---~p~r~vLl~GPPGTGKT~lAkaLA~~lg~ 413 (415)
..+|+||.|..+.+..+.+++.|...+ ... + .-..|||||||||||||+||-++|..+++
T Consensus 663 gi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~ 727 (952)
T KOG0735|consen 663 GIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNL 727 (952)
T ss_pred CCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCe
Confidence 479999999999999999988875432 111 1 22569999999999999999999998876
No 51
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.43 E-value=2.7e-07 Score=94.07 Aligned_cols=54 Identities=24% Similarity=0.212 Sum_probs=42.8
Q ss_pred ccCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhCC
Q 014938 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSVW 413 (415)
Q Consensus 353 ~~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~ 413 (415)
.+..|++|+|++.+...+...... +..+..+|||||||||||++|+++|+.++.
T Consensus 11 rP~~~~~iiGq~~~~~~l~~~~~~-------~~~~h~~L~~Gp~G~GKTtla~~la~~l~c 64 (363)
T PRK14961 11 RPQYFRDIIGQKHIVTAISNGLSL-------GRIHHAWLLSGTRGVGKTTIARLLAKSLNC 64 (363)
T ss_pred CCCchhhccChHHHHHHHHHHHHc-------CCCCeEEEEecCCCCCHHHHHHHHHHHhcC
Confidence 356899999999998877655432 222445799999999999999999998864
No 52
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=98.41 E-value=2.9e-07 Score=101.99 Aligned_cols=62 Identities=26% Similarity=0.423 Sum_probs=49.3
Q ss_pred ccCCCccccCChhHHHHHHHHHHHHHh----h-hhhcCCCccEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 353 AIKNNGDIILHPSLQRRIQHLAKATAN----T-KIHQAPFRNMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 353 ~~~~~ddvv~~~~l~~~l~~l~~~~~~----~-k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
+..+|+||+|.+.....|..++..... . ..+..|+++||||||||||||+++++||++++.+
T Consensus 173 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~ 239 (733)
T TIGR01243 173 PKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAY 239 (733)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCe
Confidence 567899999999998888777654321 1 2233678999999999999999999999998764
No 53
>PRK06620 hypothetical protein; Validated
Probab=98.40 E-value=4.5e-07 Score=85.98 Aligned_cols=61 Identities=16% Similarity=0.177 Sum_probs=43.2
Q ss_pred ccccCCCccccCChhHHHHHHHHHHHHHhhhhhcCC-CccEEEecCCCCcHHHHHHHHHHHhCC
Q 014938 351 VEAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAP-FRNMLFYGPPGTGKTMVAREIARKSVW 413 (415)
Q Consensus 351 ~~~~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p-~r~vLl~GPPGTGKT~lAkaLA~~lg~ 413 (415)
..+..+|+++|..+.....+..+..+.... +..| .+.++||||||||||||+.++++..+.
T Consensus 9 ~~~~~tfd~Fvvg~~N~~a~~~~~~~~~~~--~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~ 70 (214)
T PRK06620 9 TSSKYHPDEFIVSSSNDQAYNIIKNWQCGF--GVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNA 70 (214)
T ss_pred CCCCCCchhhEecccHHHHHHHHHHHHHcc--ccCCCcceEEEECCCCCCHHHHHHHHHhccCC
Confidence 456678999987776655555555543311 1224 267999999999999999999987653
No 54
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=98.39 E-value=5e-07 Score=91.62 Aligned_cols=32 Identities=16% Similarity=0.101 Sum_probs=29.4
Q ss_pred hcCCCccEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 383 HQAPFRNMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 383 ~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
+..++++++||||||||||++|+++|.++|++
T Consensus 144 ~ik~PlgllL~GPPGcGKTllAraiA~elg~~ 175 (413)
T PLN00020 144 NIKVPLILGIWGGKGQGKSFQCELVFKKMGIE 175 (413)
T ss_pred CCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCC
Confidence 34788999999999999999999999999986
No 55
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.38 E-value=3.2e-07 Score=91.37 Aligned_cols=51 Identities=27% Similarity=0.449 Sum_probs=41.1
Q ss_pred cCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 354 ~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
+..|++++|++.+...+..++... ..+++|||||||||||++|+++++.+.
T Consensus 11 P~~~~~~~g~~~~~~~L~~~~~~~--------~~~~lll~Gp~GtGKT~la~~~~~~l~ 61 (337)
T PRK12402 11 PALLEDILGQDEVVERLSRAVDSP--------NLPHLLVQGPPGSGKTAAVRALARELY 61 (337)
T ss_pred CCcHHHhcCCHHHHHHHHHHHhCC--------CCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 567999999999888776655321 124899999999999999999999874
No 56
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.38 E-value=4.7e-07 Score=89.39 Aligned_cols=53 Identities=34% Similarity=0.465 Sum_probs=40.8
Q ss_pred cccCChhHHHHHHHHHHHHHhhhh----h---cCCCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 359 DIILHPSLQRRIQHLAKATANTKI----H---QAPFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 359 dvv~~~~l~~~l~~l~~~~~~~k~----~---~~p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+++|..++++.|..+..+....+. + ..|..||||+||||||||++|+++|..+
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l 82 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQIL 82 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHH
Confidence 588999999988888776443221 1 1245589999999999999999998765
No 57
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.37 E-value=4.6e-07 Score=93.45 Aligned_cols=54 Identities=28% Similarity=0.298 Sum_probs=43.2
Q ss_pred ccCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhCC
Q 014938 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSVW 413 (415)
Q Consensus 353 ~~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~ 413 (415)
.+..|++|+|++.+.+.|...+.. +..+..+|||||||||||++|+++|+.+++
T Consensus 11 RP~~~~eiiGq~~~~~~L~~~~~~-------~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c 64 (397)
T PRK14955 11 RPKKFADITAQEHITRTIQNSLRM-------GRVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (397)
T ss_pred CCCcHhhccChHHHHHHHHHHHHh-------CCcceeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 356899999999998877654432 222345999999999999999999999876
No 58
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.37 E-value=4.1e-07 Score=95.42 Aligned_cols=54 Identities=26% Similarity=0.331 Sum_probs=43.4
Q ss_pred ccCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhCC
Q 014938 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSVW 413 (415)
Q Consensus 353 ~~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~ 413 (415)
.+..|++|||++.+...|...+... ..+..+|||||||||||++|+.||+.++.
T Consensus 13 RP~~f~dvVGQe~iv~~L~~~i~~~-------ri~ha~Lf~GP~GtGKTTlAriLAk~Lnc 66 (484)
T PRK14956 13 RPQFFRDVIHQDLAIGALQNALKSG-------KIGHAYIFFGPRGVGKTTIARILAKRLNC 66 (484)
T ss_pred CCCCHHHHhChHHHHHHHHHHHHcC-------CCCeEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 4669999999999888776554432 22345899999999999999999999876
No 59
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.37 E-value=4.5e-07 Score=96.41 Aligned_cols=55 Identities=20% Similarity=0.239 Sum_probs=44.1
Q ss_pred ccCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 353 ~~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
.+..|++|||++.+...|...+... ..+..+|||||||||||++|+++|+.++++
T Consensus 11 RP~~f~divGq~~v~~~L~~~~~~~-------~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 65 (509)
T PRK14958 11 RPRCFQEVIGQAPVVRALSNALDQQ-------YLHHAYLFTGTRGVGKTTISRILAKCLNCE 65 (509)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHhC-------CCCeeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 3568999999999988776655332 223458999999999999999999998763
No 60
>PRK06893 DNA replication initiation factor; Validated
Probab=98.35 E-value=7.6e-07 Score=85.02 Aligned_cols=55 Identities=11% Similarity=0.097 Sum_probs=37.0
Q ss_pred ccccCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 351 VEAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 351 ~~~~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
..+..+||++++.+...- +..+... ... ...+.++||||||||||||+.++|+++
T Consensus 9 ~~~~~~fd~f~~~~~~~~-~~~~~~~---~~~--~~~~~l~l~G~~G~GKThL~~ai~~~~ 63 (229)
T PRK06893 9 QIDDETLDNFYADNNLLL-LDSLRKN---FID--LQQPFFYIWGGKSSGKSHLLKAVSNHY 63 (229)
T ss_pred CCCcccccccccCChHHH-HHHHHHH---hhc--cCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 456779999997775432 2222211 111 122368999999999999999999875
No 61
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.34 E-value=5.3e-07 Score=95.11 Aligned_cols=54 Identities=22% Similarity=0.209 Sum_probs=43.0
Q ss_pred ccCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhCC
Q 014938 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSVW 413 (415)
Q Consensus 353 ~~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~ 413 (415)
.+..|+|+||++.+...|...... +..+.++|||||||||||++|+.+|+.+++
T Consensus 8 RP~~f~dliGQe~vv~~L~~a~~~-------~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC 61 (491)
T PRK14964 8 RPSSFKDLVGQDVLVRILRNAFTL-------NKIPQSILLVGASGVGKTTCARIISLCLNC 61 (491)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc-------CCCCceEEEECCCCccHHHHHHHHHHHHcC
Confidence 356899999999988877644332 234568999999999999999999998754
No 62
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.33 E-value=3.6e-07 Score=94.73 Aligned_cols=53 Identities=30% Similarity=0.475 Sum_probs=40.9
Q ss_pred cCCCccccCChhHHHH---HHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 354 IKNNGDIILHPSLQRR---IQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 354 ~~~~ddvv~~~~l~~~---l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
+..|+++||++.+... +..++.. ....++|||||||||||++|+.|++.++.+
T Consensus 8 P~~l~d~vGq~~~v~~~~~L~~~i~~--------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~ 63 (413)
T PRK13342 8 PKTLDEVVGQEHLLGPGKPLRRMIEA--------GRLSSMILWGPPGTGKTTLARIIAGATDAP 63 (413)
T ss_pred CCCHHHhcCcHHHhCcchHHHHHHHc--------CCCceEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 5689999999988654 4444321 224589999999999999999999988754
No 63
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.33 E-value=6e-07 Score=97.00 Aligned_cols=54 Identities=22% Similarity=0.301 Sum_probs=44.0
Q ss_pred ccCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhCC
Q 014938 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSVW 413 (415)
Q Consensus 353 ~~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~ 413 (415)
.+..|++|||++.+.+.|...+.. +..+..+|||||||||||++|+++|+.+++
T Consensus 10 RPktFddVIGQe~vv~~L~~aI~~-------grl~HAyLF~GPpGvGKTTlAriLAK~LnC 63 (702)
T PRK14960 10 RPRNFNELVGQNHVSRALSSALER-------GRLHHAYLFTGTRGVGKTTIARILAKCLNC 63 (702)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc-------CCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 356899999999998877655432 233467899999999999999999999876
No 64
>PRK06526 transposase; Provisional
Probab=98.31 E-value=3.8e-07 Score=88.74 Aligned_cols=25 Identities=44% Similarity=0.785 Sum_probs=22.7
Q ss_pred CccEEEecCCCCcHHHHHHHHHHHh
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
..|++|+|||||||||+|.+|+.++
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a 122 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRA 122 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHH
Confidence 4699999999999999999998764
No 65
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.30 E-value=7.3e-07 Score=98.99 Aligned_cols=55 Identities=18% Similarity=0.187 Sum_probs=43.2
Q ss_pred ccCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 353 ~~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
.+..|++|||++.+...|..++... ..+..+|||||||||||++|++||+.++++
T Consensus 11 RP~tFddIIGQe~Iv~~LknaI~~~-------rl~HAyLFtGPpGtGKTTLARiLAk~Lnce 65 (944)
T PRK14949 11 RPATFEQMVGQSHVLHALTNALTQQ-------RLHHAYLFTGTRGVGKTSLARLFAKGLNCE 65 (944)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHhC-------CCCeEEEEECCCCCCHHHHHHHHHHhccCc
Confidence 3568999999999988776554331 223346999999999999999999998763
No 66
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.29 E-value=8.1e-07 Score=94.26 Aligned_cols=55 Identities=22% Similarity=0.136 Sum_probs=44.4
Q ss_pred cccCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhCC
Q 014938 352 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSVW 413 (415)
Q Consensus 352 ~~~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~ 413 (415)
..+..|+|++|++.+...|...... +..+.++||+||||||||++|+++|+.+++
T Consensus 15 yRP~~f~dliGq~~vv~~L~~ai~~-------~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc 69 (507)
T PRK06645 15 YRPSNFAELQGQEVLVKVLSYTILN-------DRLAGGYLLTGIRGVGKTTSARIIAKAVNC 69 (507)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHc-------CCCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3467999999999988877654322 233568999999999999999999999875
No 67
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.29 E-value=1.2e-06 Score=84.09 Aligned_cols=56 Identities=7% Similarity=0.082 Sum_probs=38.2
Q ss_pred ccccCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 351 VEAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 351 ~~~~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
..+..+||+++.. .....+..+..+..+ ...++++||||||||||||+.++|+++.
T Consensus 15 ~~~~~~fd~f~~~-~n~~a~~~l~~~~~~-----~~~~~l~l~Gp~G~GKThLl~a~~~~~~ 70 (235)
T PRK08084 15 LPDDETFASFYPG-DNDSLLAALQNALRQ-----EHSGYIYLWSREGAGRSHLLHAACAELS 70 (235)
T ss_pred CCCcCCccccccC-ccHHHHHHHHHHHhC-----CCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 3456688888844 333344444444332 1235899999999999999999998753
No 68
>PRK08181 transposase; Validated
Probab=98.28 E-value=6.2e-07 Score=87.92 Aligned_cols=25 Identities=40% Similarity=0.701 Sum_probs=22.6
Q ss_pred CccEEEecCCCCcHHHHHHHHHHHh
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
..|++|||||||||||||.+||+++
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a 130 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLAL 130 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHH
Confidence 4699999999999999999999754
No 69
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.28 E-value=7.4e-07 Score=94.61 Aligned_cols=54 Identities=22% Similarity=0.220 Sum_probs=43.2
Q ss_pred ccCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhCC
Q 014938 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSVW 413 (415)
Q Consensus 353 ~~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~ 413 (415)
.+..|++|+|++.+...|..++... ..+..+|||||||||||++|+++|+.+.+
T Consensus 9 RP~~~~dvvGq~~v~~~L~~~i~~~-------~l~ha~Lf~GppGtGKTTlA~~lA~~l~c 62 (504)
T PRK14963 9 RPITFDEVVGQEHVKEVLLAALRQG-------RLGHAYLFSGPRGVGKTTTARLIAMAVNC 62 (504)
T ss_pred CCCCHHHhcChHHHHHHHHHHHHcC-------CCCeEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 3568999999999988777665542 22344699999999999999999998864
No 70
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.28 E-value=1e-06 Score=87.49 Aligned_cols=55 Identities=22% Similarity=0.213 Sum_probs=41.9
Q ss_pred ccCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 353 ~~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
.+..|++++|++++...+..++.. +..+..+|||||||||||+++++++++++.+
T Consensus 16 rP~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~lll~G~~G~GKT~la~~l~~~~~~~ 70 (316)
T PHA02544 16 RPSTIDECILPAADKETFKSIVKK-------GRIPNMLLHSPSPGTGKTTVAKALCNEVGAE 70 (316)
T ss_pred CCCcHHHhcCcHHHHHHHHHHHhc-------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCcc
Confidence 457999999999998877766542 1223344458999999999999999987653
No 71
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=2e-05 Score=84.92 Aligned_cols=50 Identities=28% Similarity=0.352 Sum_probs=34.0
Q ss_pred CChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhCC
Q 014938 362 LHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSVW 413 (415)
Q Consensus 362 ~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~ 413 (415)
|..+++++|..++.-... ++....+-++|+||||+|||++++.||..+|.
T Consensus 415 gm~dVKeRILEfiAV~kL--rgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnR 464 (906)
T KOG2004|consen 415 GMEDVKERILEFIAVGKL--RGSVQGKILCFVGPPGVGKTSIAKSIARALNR 464 (906)
T ss_pred chHHHHHHHHHHHHHHhh--cccCCCcEEEEeCCCCCCcccHHHHHHHHhCC
Confidence 335556755555443322 11223456889999999999999999999885
No 72
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.26 E-value=1.1e-06 Score=93.99 Aligned_cols=54 Identities=24% Similarity=0.306 Sum_probs=43.2
Q ss_pred cCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 354 ~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
+..|++++|++.+...|...+.. +..+..+|||||||||||++|+.+|+.++++
T Consensus 12 P~~f~divGq~~v~~~L~~~i~~-------~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 65 (527)
T PRK14969 12 PKSFSELVGQEHVVRALTNALEQ-------QRLHHAYLFTGTRGVGKTTLARILAKSLNCE 65 (527)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHc-------CCCCEEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 56899999999998877655443 2233457999999999999999999998763
No 73
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=98.26 E-value=1.8e-05 Score=88.20 Aligned_cols=53 Identities=21% Similarity=0.234 Sum_probs=38.9
Q ss_pred ccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 360 IILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 360 vv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
..|...++++|..+......... .....++|+||||||||++++.+|..+|.+
T Consensus 324 ~~g~~~vK~~i~~~l~~~~~~~~--~~g~~i~l~GppG~GKTtl~~~ia~~l~~~ 376 (784)
T PRK10787 324 HYGLERVKDRILEYLAVQSRVNK--IKGPILCLVGPPGVGKTSLGQSIAKATGRK 376 (784)
T ss_pred ccCHHHHHHHHHHHHHHHHhccc--CCCceEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 67778888866554443322211 234479999999999999999999998875
No 74
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.25 E-value=1e-06 Score=95.88 Aligned_cols=55 Identities=22% Similarity=0.264 Sum_probs=45.0
Q ss_pred ccCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 353 ~~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
.+..|++|||++.+...|...+.. +..+.++|||||||||||++|++||+.++++
T Consensus 11 RP~tFddIIGQe~vv~~L~~ai~~-------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~ 65 (709)
T PRK08691 11 RPKTFADLVGQEHVVKALQNALDE-------GRLHHAYLLTGTRGVGKTTIARILAKSLNCE 65 (709)
T ss_pred CCCCHHHHcCcHHHHHHHHHHHHc-------CCCCeEEEEECCCCCcHHHHHHHHHHHhccc
Confidence 467999999999999877665443 2335678999999999999999999998764
No 75
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.25 E-value=1.2e-06 Score=93.69 Aligned_cols=54 Identities=20% Similarity=0.247 Sum_probs=42.8
Q ss_pred ccCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhCC
Q 014938 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSVW 413 (415)
Q Consensus 353 ~~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~ 413 (415)
.+..|++|+|++.+...|...+.. +..+..+|||||||||||++|+.+|+.+++
T Consensus 11 RP~~f~diiGq~~~v~~L~~~i~~-------~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c 64 (546)
T PRK14957 11 RPQSFAEVAGQQHALNSLVHALET-------QKVHHAYLFTGTRGVGKTTLGRLLAKCLNC 64 (546)
T ss_pred CcCcHHHhcCcHHHHHHHHHHHHc-------CCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 356899999999988876655432 122445899999999999999999998875
No 76
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=4.5e-05 Score=82.51 Aligned_cols=50 Identities=28% Similarity=0.389 Sum_probs=35.9
Q ss_pred ChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 363 HPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 363 ~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
.+.++++|-.++.-....+...+| -+||+||||+|||+|++.+|..+|.+
T Consensus 328 LekVKeRIlEyLAV~~l~~~~kGp--ILcLVGPPGVGKTSLgkSIA~al~Rk 377 (782)
T COG0466 328 LEKVKERILEYLAVQKLTKKLKGP--ILCLVGPPGVGKTSLGKSIAKALGRK 377 (782)
T ss_pred chhHHHHHHHHHHHHHHhccCCCc--EEEEECCCCCCchhHHHHHHHHhCCC
Confidence 345567666555554444333333 68899999999999999999998854
No 77
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=7e-07 Score=92.53 Aligned_cols=46 Identities=35% Similarity=0.496 Sum_probs=37.7
Q ss_pred cCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHH
Q 014938 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIAR 409 (415)
Q Consensus 354 ~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~ 409 (415)
..+|.||+|+...+..+.--+ . ...|+||||||||||||+|+.|..
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAA-A---------GgHnLl~~GpPGtGKTmla~Rl~~ 220 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAA-A---------GGHNLLLVGPPGTGKTMLASRLPG 220 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHH-h---------cCCcEEEecCCCCchHHhhhhhcc
Confidence 458999999999988775332 2 146999999999999999998864
No 78
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.22 E-value=1.9e-06 Score=81.58 Aligned_cols=56 Identities=11% Similarity=0.227 Sum_probs=36.6
Q ss_pred ccccCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 351 VEAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 351 ~~~~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
.....+||++++... ...+..+..+.. ...+.++++|||||||||||||+++++++
T Consensus 11 ~~~~~~~d~f~~~~~-~~~~~~l~~~~~----~~~~~~~~~l~G~~G~GKT~La~ai~~~~ 66 (227)
T PRK08903 11 PPPPPTFDNFVAGEN-AELVARLRELAA----GPVADRFFYLWGEAGSGRSHLLQALVADA 66 (227)
T ss_pred CCChhhhcccccCCc-HHHHHHHHHHHh----ccCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 455678898873322 122322322222 12345789999999999999999999875
No 79
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.22 E-value=1.4e-06 Score=93.82 Aligned_cols=54 Identities=24% Similarity=0.274 Sum_probs=43.0
Q ss_pred ccCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhCC
Q 014938 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSVW 413 (415)
Q Consensus 353 ~~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~ 413 (415)
.+..|++|+|++.+.+.|...+... ..+.-+|||||||||||++|++||+.+++
T Consensus 8 RP~~f~eivGq~~i~~~L~~~i~~~-------r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 61 (584)
T PRK14952 8 RPATFAEVVGQEHVTEPLSSALDAG-------RINHAYLFSGPRGCGKTSSARILARSLNC 61 (584)
T ss_pred CCCcHHHhcCcHHHHHHHHHHHHcC-------CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 3568999999999988877665431 12234799999999999999999999875
No 80
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.22 E-value=7.9e-06 Score=91.74 Aligned_cols=53 Identities=26% Similarity=0.379 Sum_probs=39.6
Q ss_pred cccCChhHHHHHHHHH-HHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 359 DIILHPSLQRRIQHLA-KATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 359 dvv~~~~l~~~l~~l~-~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
.|+|++...+.|...+ .........+.|..++||+||||||||++|++||..+
T Consensus 510 ~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l 563 (821)
T CHL00095 510 RIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYF 563 (821)
T ss_pred cCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 3889999888554433 3333333445566679999999999999999999876
No 81
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.21 E-value=1.7e-06 Score=88.01 Aligned_cols=54 Identities=26% Similarity=0.372 Sum_probs=43.0
Q ss_pred ccCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhCC
Q 014938 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSVW 413 (415)
Q Consensus 353 ~~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~ 413 (415)
.+..|++++|++.+.+.+...... +..+.++|||||||+|||++|+++++.++.
T Consensus 12 rP~~~~~iig~~~~~~~l~~~i~~-------~~~~~~~L~~G~~G~GKt~~a~~la~~l~~ 65 (367)
T PRK14970 12 RPQTFDDVVGQSHITNTLLNAIEN-------NHLAQALLFCGPRGVGKTTCARILARKINQ 65 (367)
T ss_pred CCCcHHhcCCcHHHHHHHHHHHHc-------CCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 356899999999987766544432 234568999999999999999999998764
No 82
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=1.2e-06 Score=90.26 Aligned_cols=63 Identities=29% Similarity=0.335 Sum_probs=50.8
Q ss_pred ccccCCCccccCChhHHHHHHHHHHHHHh----hhhhcCCCccEEEecCCCCcHHHHHHHHHHHhCC
Q 014938 351 VEAIKNNGDIILHPSLQRRIQHLAKATAN----TKIHQAPFRNMLFYGPPGTGKTMVAREIARKSVW 413 (415)
Q Consensus 351 ~~~~~~~ddvv~~~~l~~~l~~l~~~~~~----~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~ 413 (415)
......|+|+.|...++..+..+..+... ...-..|.+++||+||||||||+|++|||.+++.
T Consensus 146 ~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~~a 212 (428)
T KOG0740|consen 146 TLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIATESGA 212 (428)
T ss_pred cCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccccccchhheecCCCCchHHHHHHHHhhhcc
Confidence 34567899999989988888888777543 1222367899999999999999999999999874
No 83
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=98.20 E-value=2e-06 Score=88.68 Aligned_cols=55 Identities=24% Similarity=0.362 Sum_probs=39.6
Q ss_pred ccCChhHHHHHHHHHHHHHh-hh-----hhcCCCccEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 360 IILHPSLQRRIQHLAKATAN-TK-----IHQAPFRNMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 360 vv~~~~l~~~l~~l~~~~~~-~k-----~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
|+|+++.++.+.-.+...+. .. ....+++||||+||||||||++|++||..+++|
T Consensus 14 IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~ 74 (441)
T TIGR00390 14 IIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAP 74 (441)
T ss_pred ccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 88999988866433322111 11 011346899999999999999999999999876
No 84
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.20 E-value=1.1e-06 Score=83.73 Aligned_cols=51 Identities=31% Similarity=0.423 Sum_probs=42.9
Q ss_pred cCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 354 ~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
+..+.|+||+++..+++..++... +. .|++|.||||||||+.+.+||+++-
T Consensus 23 P~~l~dIVGNe~tv~rl~via~~g------nm--P~liisGpPG~GKTTsi~~LAr~LL 73 (333)
T KOG0991|consen 23 PSVLQDIVGNEDTVERLSVIAKEG------NM--PNLIISGPPGTGKTTSILCLARELL 73 (333)
T ss_pred chHHHHhhCCHHHHHHHHHHHHcC------CC--CceEeeCCCCCchhhHHHHHHHHHh
Confidence 456888999999999998776543 33 4999999999999999999998863
No 85
>CHL00206 ycf2 Ycf2; Provisional
Probab=98.20 E-value=9.4e-07 Score=103.37 Aligned_cols=31 Identities=29% Similarity=0.458 Sum_probs=29.3
Q ss_pred cCCCccEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 384 QAPFRNMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 384 ~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
..|++||||+||||||||+||++||.++++|
T Consensus 1627 l~pPKGILLiGPPGTGKTlLAKALA~es~VP 1657 (2281)
T CHL00206 1627 LSPSRGILVIGSIGTGRSYLVKYLATNSYVP 1657 (2281)
T ss_pred CCCCCceEEECCCCCCHHHHHHHHHHhcCCc
Confidence 3678999999999999999999999999998
No 86
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.20 E-value=2.1e-06 Score=86.32 Aligned_cols=54 Identities=28% Similarity=0.345 Sum_probs=42.7
Q ss_pred ccCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhCC
Q 014938 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSVW 413 (415)
Q Consensus 353 ~~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~ 413 (415)
.+..|++++|++.+.+.+...+.. +..+..+|||||||+|||++|++++..+..
T Consensus 9 rp~~~~~iig~~~~~~~l~~~~~~-------~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~ 62 (355)
T TIGR02397 9 RPQTFEDVIGQEHIVQTLKNAIKN-------GRIAHAYLFSGPRGTGKTSIARIFAKALNC 62 (355)
T ss_pred CCCcHhhccCcHHHHHHHHHHHHc-------CCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 356899999999988877654432 233457899999999999999999988753
No 87
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.20 E-value=1.9e-06 Score=88.86 Aligned_cols=60 Identities=22% Similarity=0.339 Sum_probs=45.0
Q ss_pred CCCccccCChhHHHHHHHHHHHHHh-hh-hhcCCCccEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 355 KNNGDIILHPSLQRRIQHLAKATAN-TK-IHQAPFRNMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 355 ~~~ddvv~~~~l~~~l~~l~~~~~~-~k-~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
..|++|+|++.+.+.|...+..... .. .+...+..+|||||||||||++|+++|..+..+
T Consensus 2 ~~f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~ 63 (394)
T PRK07940 2 SVWDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCT 63 (394)
T ss_pred ChhhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 3689999999999988777665321 11 111235679999999999999999999987653
No 88
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.19 E-value=1.5e-06 Score=94.21 Aligned_cols=54 Identities=24% Similarity=0.266 Sum_probs=43.3
Q ss_pred ccCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhCC
Q 014938 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSVW 413 (415)
Q Consensus 353 ~~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~ 413 (415)
.+..|++|+|++.+...|...+.. +.-+..+|||||||||||++|+++|+.+++
T Consensus 11 RP~~f~eivGQe~i~~~L~~~i~~-------~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c 64 (620)
T PRK14954 11 RPSKFADITAQEHITHTIQNSLRM-------DRVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (620)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc-------CCCCeeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 356899999999988877654432 222446999999999999999999999976
No 89
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.19 E-value=2e-06 Score=92.56 Aligned_cols=54 Identities=22% Similarity=0.267 Sum_probs=42.6
Q ss_pred ccCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhCC
Q 014938 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSVW 413 (415)
Q Consensus 353 ~~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~ 413 (415)
.+..|++++|++.+...+...... +..++.+|||||||||||++|+++|+.+.+
T Consensus 11 RP~~F~dIIGQe~iv~~L~~aI~~-------~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C 64 (605)
T PRK05896 11 RPHNFKQIIGQELIKKILVNAILN-------NKLTHAYIFSGPRGIGKTSIAKIFAKAINC 64 (605)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc-------CCCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 356899999999988766544322 223467999999999999999999998864
No 90
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.19 E-value=1.5e-06 Score=93.81 Aligned_cols=54 Identities=20% Similarity=0.305 Sum_probs=44.0
Q ss_pred ccCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhCC
Q 014938 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSVW 413 (415)
Q Consensus 353 ~~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~ 413 (415)
.+..|++|||++.+...|...+... .....+||+||+|||||++|+.||+.+++
T Consensus 11 RPqtFddVIGQe~vv~~L~~al~~g-------RLpHA~LFtGP~GvGKTTLAriLAkaLnC 64 (700)
T PRK12323 11 RPRDFTTLVGQEHVVRALTHALEQQ-------RLHHAYLFTGTRGVGKTTLSRILAKSLNC 64 (700)
T ss_pred CCCcHHHHcCcHHHHHHHHHHHHhC-------CCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4668999999999998777665432 22345799999999999999999999986
No 91
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.19 E-value=1.9e-06 Score=92.62 Aligned_cols=54 Identities=24% Similarity=0.331 Sum_probs=43.6
Q ss_pred ccCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhCC
Q 014938 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSVW 413 (415)
Q Consensus 353 ~~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~ 413 (415)
.+..|++|+|++.+...|...+.. +.....+|||||||||||++|+.+|+.+++
T Consensus 11 rP~~f~~viGq~~v~~~L~~~i~~-------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c 64 (559)
T PRK05563 11 RPQTFEDVVGQEHITKTLKNAIKQ-------GKISHAYLFSGPRGTGKTSAAKIFAKAVNC 64 (559)
T ss_pred CCCcHHhccCcHHHHHHHHHHHHc-------CCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 356899999999988877655543 223456899999999999999999998875
No 92
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.18 E-value=1.5e-06 Score=94.05 Aligned_cols=53 Identities=19% Similarity=0.284 Sum_probs=42.7
Q ss_pred cCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhCC
Q 014938 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSVW 413 (415)
Q Consensus 354 ~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~ 413 (415)
+..|++|||++.+...|..++... ..+..+|||||+|||||++|++||+.+++
T Consensus 12 P~~f~dviGQe~vv~~L~~~l~~~-------rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC 64 (618)
T PRK14951 12 PRSFSEMVGQEHVVQALTNALTQQ-------RLHHAYLFTGTRGVGKTTVSRILAKSLNC 64 (618)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC-------CCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 568999999999888776655432 22345799999999999999999999875
No 93
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.18 E-value=1.7e-06 Score=95.37 Aligned_cols=56 Identities=25% Similarity=0.391 Sum_probs=40.8
Q ss_pred ccCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhCC
Q 014938 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSVW 413 (415)
Q Consensus 353 ~~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~ 413 (415)
.+..|++++|++.+......+...... ....++|||||||||||++|++|++.++.
T Consensus 23 RP~tldd~vGQe~ii~~~~~L~~~i~~-----~~~~slLL~GPpGtGKTTLA~aIA~~~~~ 78 (725)
T PRK13341 23 RPRTLEEFVGQDHILGEGRLLRRAIKA-----DRVGSLILYGPPGVGKTTLARIIANHTRA 78 (725)
T ss_pred CCCcHHHhcCcHHHhhhhHHHHHHHhc-----CCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 367899999999877532222222221 22459999999999999999999988764
No 94
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.18 E-value=1.2e-06 Score=88.00 Aligned_cols=61 Identities=30% Similarity=0.316 Sum_probs=42.5
Q ss_pred CCccccCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 349 GPVEAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 349 ~~~~~~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
.....+..++|+||+..+...-..+..... . .....++||||||||||+||+.|+.-+.-+
T Consensus 129 aermRPktL~dyvGQ~hlv~q~gllrs~ie---q--~~ipSmIlWGppG~GKTtlArlia~tsk~~ 189 (554)
T KOG2028|consen 129 AERMRPKTLDDYVGQSHLVGQDGLLRSLIE---Q--NRIPSMILWGPPGTGKTTLARLIASTSKKH 189 (554)
T ss_pred hhhcCcchHHHhcchhhhcCcchHHHHHHH---c--CCCCceEEecCCCCchHHHHHHHHhhcCCC
Confidence 334456789999999988764222222211 1 224599999999999999999999866543
No 95
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=1e-06 Score=91.88 Aligned_cols=32 Identities=41% Similarity=0.763 Sum_probs=27.4
Q ss_pred hhcCCCccEEEecCCCCcHHHHHHHHHHHhCC
Q 014938 382 IHQAPFRNMLFYGPPGTGKTMVAREIARKSVW 413 (415)
Q Consensus 382 ~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~ 413 (415)
.+...-++||||||||||||++|+-|+..++.
T Consensus 251 lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNA 282 (744)
T KOG0741|consen 251 LGIKHVKGILLYGPPGTGKTLIARQIGKMLNA 282 (744)
T ss_pred cCccceeeEEEECCCCCChhHHHHHHHHHhcC
Confidence 33445689999999999999999999998874
No 96
>PRK08116 hypothetical protein; Validated
Probab=98.17 E-value=3.3e-06 Score=82.79 Aligned_cols=58 Identities=19% Similarity=0.224 Sum_probs=35.5
Q ss_pred cCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 354 ~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
..+|++++..+.....+........+.........+++|||||||||||||.+|++++
T Consensus 81 ~~tFdnf~~~~~~~~a~~~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~aia~~l 138 (268)
T PRK08116 81 NSTFENFLFDKGSEKAYKIARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAACIANEL 138 (268)
T ss_pred hcchhcccCChHHHHHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 3467777654544333332222222222212223579999999999999999999975
No 97
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=98.17 E-value=4e-06 Score=86.97 Aligned_cols=55 Identities=22% Similarity=0.295 Sum_probs=39.1
Q ss_pred ccCChhHHHHHHHHH-HHHHhhhhh-------cCCCccEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 360 IILHPSLQRRIQHLA-KATANTKIH-------QAPFRNMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 360 vv~~~~l~~~l~~l~-~~~~~~k~~-------~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
|+|++.+++.|...+ .+....... ..+..||||+||||||||++|++||..+++|
T Consensus 73 ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~p 135 (412)
T PRK05342 73 VIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVP 135 (412)
T ss_pred eeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 899999888664322 221111110 1245799999999999999999999998876
No 98
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.17 E-value=2.4e-06 Score=89.70 Aligned_cols=53 Identities=23% Similarity=0.268 Sum_probs=42.6
Q ss_pred cCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhCC
Q 014938 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSVW 413 (415)
Q Consensus 354 ~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~ 413 (415)
+..|++|+|++.+...+...+.. +..+..+|||||||||||++|+++|+.+..
T Consensus 13 P~~~~diiGq~~~v~~L~~~i~~-------~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c 65 (451)
T PRK06305 13 PQTFSEILGQDAVVAVLKNALRF-------NRAAHAYLFSGIRGTGKTTLARIFAKALNC 65 (451)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------CCCceEEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 56899999999988876655533 223457899999999999999999998764
No 99
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.17 E-value=2e-06 Score=94.06 Aligned_cols=54 Identities=22% Similarity=0.301 Sum_probs=43.2
Q ss_pred ccCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhCC
Q 014938 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSVW 413 (415)
Q Consensus 353 ~~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~ 413 (415)
.+..|++|||++.+.+.|...+.. +.....+|||||+|||||++|+.||+.+++
T Consensus 11 RPqtFdEVIGQe~Vv~~L~~aL~~-------gRL~HAyLFtGPpGvGKTTlAriLAKaLnC 64 (830)
T PRK07003 11 RPKDFASLVGQEHVVRALTHALDG-------GRLHHAYLFTGTRGVGKTTLSRIFAKALNC 64 (830)
T ss_pred CCCcHHHHcCcHHHHHHHHHHHhc-------CCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 466999999999998877655432 222345799999999999999999999876
No 100
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.16 E-value=3.1e-06 Score=79.54 Aligned_cols=55 Identities=13% Similarity=0.144 Sum_probs=35.9
Q ss_pred cccCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 352 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 352 ~~~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
....+|++++. +.....+..+..+.. .....+++||||||||||++|+++++.+.
T Consensus 9 ~~~~~~~~~~~-~~~~~~~~~l~~~~~-----~~~~~~lll~G~~G~GKT~la~~~~~~~~ 63 (226)
T TIGR03420 9 PDDPTFDNFYA-GGNAELLAALRQLAA-----GKGDRFLYLWGESGSGKSHLLQAACAAAE 63 (226)
T ss_pred CCchhhcCcCc-CCcHHHHHHHHHHHh-----cCCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 34567888873 222223333333322 12357999999999999999999998763
No 101
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.14 E-value=2.7e-06 Score=91.86 Aligned_cols=55 Identities=24% Similarity=0.267 Sum_probs=43.7
Q ss_pred ccCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 353 ~~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
.+..|++|||++.+...|...+.. +..+..+|||||||||||++|++||+.++++
T Consensus 11 RP~~f~~iiGq~~v~~~L~~~i~~-------~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~ 65 (576)
T PRK14965 11 RPQTFSDLTGQEHVSRTLQNAIDT-------GRVAHAFLFTGARGVGKTSTARILAKALNCE 65 (576)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHc-------CCCCeEEEEECCCCCCHHHHHHHHHHhhcCC
Confidence 356899999999988877655432 2234567999999999999999999998753
No 102
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.14 E-value=2.3e-06 Score=92.56 Aligned_cols=54 Identities=20% Similarity=0.300 Sum_probs=42.8
Q ss_pred ccCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhCC
Q 014938 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSVW 413 (415)
Q Consensus 353 ~~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~ 413 (415)
.+..|++|||++.++..|...+... .....+|||||||||||++|++||+.+++
T Consensus 11 RP~~~~eiiGq~~~~~~L~~~i~~~-------~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c 64 (585)
T PRK14950 11 RSQTFAELVGQEHVVQTLRNAIAEG-------RVAHAYLFTGPRGVGKTSTARILAKAVNC 64 (585)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHhC-------CCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3568999999999998776554331 22346799999999999999999998864
No 103
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.14 E-value=2.6e-06 Score=92.10 Aligned_cols=54 Identities=22% Similarity=0.297 Sum_probs=44.2
Q ss_pred ccCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhCC
Q 014938 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSVW 413 (415)
Q Consensus 353 ~~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~ 413 (415)
.+..|+++||++.+...|...... +..+..+|||||||||||++|++||+.+++
T Consensus 19 RP~~f~dliGq~~~v~~L~~~~~~-------gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c 72 (598)
T PRK09111 19 RPQTFDDLIGQEAMVRTLTNAFET-------GRIAQAFMLTGVRGVGKTTTARILARALNY 72 (598)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc-------CCCCceEEEECCCCCCHHHHHHHHHHhhCc
Confidence 456999999999988877655432 233567999999999999999999999875
No 104
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.14 E-value=2.4e-06 Score=93.60 Aligned_cols=54 Identities=30% Similarity=0.377 Sum_probs=43.4
Q ss_pred ccCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhCC
Q 014938 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSVW 413 (415)
Q Consensus 353 ~~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~ 413 (415)
.+..|++|+|++.+...|...+.. +..+..+|||||||||||++|+++|..+.+
T Consensus 13 RP~~f~dIiGQe~~v~~L~~aI~~-------~rl~HAYLF~GP~GtGKTt~AriLAk~LnC 66 (725)
T PRK07133 13 RPKTFDDIVGQDHIVQTLKNIIKS-------NKISHAYLFSGPRGTGKTSVAKIFANALNC 66 (725)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc-------CCCCeEEEEECCCCCcHHHHHHHHHHHhcc
Confidence 466899999999988877655533 223456899999999999999999998865
No 105
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.14 E-value=2.5e-06 Score=92.71 Aligned_cols=54 Identities=19% Similarity=0.245 Sum_probs=42.8
Q ss_pred ccCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhCC
Q 014938 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSVW 413 (415)
Q Consensus 353 ~~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~ 413 (415)
.+..|++|||++.+...|...+... .....+|||||||||||++|+.+|+.+++
T Consensus 11 RP~~f~divGQe~vv~~L~~~l~~~-------rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c 64 (647)
T PRK07994 11 RPQTFAEVVGQEHVLTALANALDLG-------RLHHAYLFSGTRGVGKTTIARLLAKGLNC 64 (647)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcC-------CCCeEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 3568999999999988776554331 22334799999999999999999999876
No 106
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.12 E-value=2.4e-06 Score=92.26 Aligned_cols=54 Identities=20% Similarity=0.255 Sum_probs=44.0
Q ss_pred ccCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhCC
Q 014938 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSVW 413 (415)
Q Consensus 353 ~~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~ 413 (415)
.+..|++|+|++.++..|...+... .-..++|||||||||||++|+.||+.+++
T Consensus 11 RP~sf~dIiGQe~v~~~L~~ai~~~-------ri~ha~Lf~GPpG~GKTtiArilAk~L~C 64 (624)
T PRK14959 11 RPQTFAEVAGQETVKAILSRAAQEN-------RVAPAYLFSGTRGVGKTTIARIFAKALNC 64 (624)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHcC-------CCCceEEEECCCCCCHHHHHHHHHHhccc
Confidence 4668999999999988777655431 22458999999999999999999999875
No 107
>PRK12377 putative replication protein; Provisional
Probab=98.11 E-value=4.9e-06 Score=80.72 Aligned_cols=25 Identities=40% Similarity=0.693 Sum_probs=23.2
Q ss_pred CccEEEecCCCCcHHHHHHHHHHHh
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
..+++|+|||||||||||.+||+.+
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l 125 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRL 125 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999886
No 108
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.11 E-value=3.1e-06 Score=91.03 Aligned_cols=54 Identities=22% Similarity=0.268 Sum_probs=43.6
Q ss_pred ccCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhCC
Q 014938 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSVW 413 (415)
Q Consensus 353 ~~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~ 413 (415)
.+..|++|+|++.+...|...+.. +..+..+|||||||||||++|++||+.++.
T Consensus 11 RP~~f~diiGqe~iv~~L~~~i~~-------~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c 64 (563)
T PRK06647 11 RPRDFNSLEGQDFVVETLKHSIES-------NKIANAYIFSGPRGVGKTSSARAFARCLNC 64 (563)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHc-------CCCCeEEEEECCCCCCHHHHHHHHHHhhcc
Confidence 356899999999998877655532 223456999999999999999999999875
No 109
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.11 E-value=4e-06 Score=81.57 Aligned_cols=48 Identities=27% Similarity=0.495 Sum_probs=35.0
Q ss_pred ccCChhHHH-HHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 360 IILHPSLQR-RIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 360 vv~~~~l~~-~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+-+.+.+.. .+..+.....+.. ...|++|||||||||||||.|||+.+
T Consensus 81 ~~~~~~~~~~~l~~~~~~~~~~~----~~~nl~l~G~~G~GKThLa~Ai~~~l 129 (254)
T COG1484 81 FEFQPGIDKKALEDLASLVEFFE----RGENLVLLGPPGVGKTHLAIAIGNEL 129 (254)
T ss_pred ccCCcchhHHHHHHHHHHHHHhc----cCCcEEEECCCCCcHHHHHHHHHHHH
Confidence 444455544 6666655553333 35799999999999999999999876
No 110
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.11 E-value=4.4e-06 Score=87.40 Aligned_cols=57 Identities=16% Similarity=0.267 Sum_probs=39.6
Q ss_pred ccccCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 351 VEAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 351 ~~~~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
..+..+||+++..+..............+ ..++.+++||||||||||||+.++|+++
T Consensus 98 l~~~~tFdnFv~g~~n~~a~~~~~~~~~~----~~~~n~l~lyG~~G~GKTHLl~ai~~~l 154 (440)
T PRK14088 98 LNPDYTFENFVVGPGNSFAYHAALEVAKN----PGRYNPLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_pred CCCCCcccccccCCchHHHHHHHHHHHhC----cCCCCeEEEEcCCCCcHHHHHHHHHHHH
Confidence 45678999998656544433333222221 1225679999999999999999999875
No 111
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.11 E-value=2.9e-06 Score=83.71 Aligned_cols=51 Identities=31% Similarity=0.546 Sum_probs=40.0
Q ss_pred cCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 354 ~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
+..|+++++++++...+...+.. +. ..++|||||||||||++++++++.+.
T Consensus 13 P~~~~~~~g~~~~~~~l~~~i~~------~~--~~~~ll~G~~G~GKt~~~~~l~~~l~ 63 (319)
T PRK00440 13 PRTLDEIVGQEEIVERLKSYVKE------KN--MPHLLFAGPPGTGKTTAALALARELY 63 (319)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhC------CC--CCeEEEECCCCCCHHHHHHHHHHHHc
Confidence 46899999999877766655422 11 34799999999999999999998863
No 112
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.10 E-value=4.3e-06 Score=92.65 Aligned_cols=56 Identities=21% Similarity=0.268 Sum_probs=42.2
Q ss_pred cccCChhHHHHHHHHHHH-HHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 359 DIILHPSLQRRIQHLAKA-TANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 359 dvv~~~~l~~~l~~l~~~-~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
.|+|+++..+.|...+.. ..+....+.|..++||+||||||||.+|++||..++.+
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~ 515 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIE 515 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 389999988865555443 33333334667789999999999999999999998754
No 113
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.09 E-value=4.8e-06 Score=87.27 Aligned_cols=58 Identities=16% Similarity=0.210 Sum_probs=39.8
Q ss_pred ccccCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 351 VEAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 351 ~~~~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
..+..+|++++..+.....+........+ .+..+.+++||||||||||||+.++|+++
T Consensus 115 l~~~~tfd~fv~g~~n~~a~~~~~~~~~~---~~~~~~~l~l~G~~G~GKThL~~ai~~~~ 172 (450)
T PRK00149 115 LNPKYTFDNFVVGKSNRLAHAAALAVAEN---PGKAYNPLFIYGGVGLGKTHLLHAIGNYI 172 (450)
T ss_pred CCCCCcccccccCCCcHHHHHHHHHHHhC---cCccCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 45667899977555544333333332222 22345679999999999999999999886
No 114
>PRK09183 transposase/IS protein; Provisional
Probab=98.08 E-value=2.7e-06 Score=82.94 Aligned_cols=25 Identities=32% Similarity=0.603 Sum_probs=22.4
Q ss_pred CccEEEecCCCCcHHHHHHHHHHHh
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
..|++|+||||||||||+.+||...
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a 126 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEA 126 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 4699999999999999999998663
No 115
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.07 E-value=4e-06 Score=93.61 Aligned_cols=54 Identities=24% Similarity=0.271 Sum_probs=43.0
Q ss_pred ccCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhCC
Q 014938 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSVW 413 (415)
Q Consensus 353 ~~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~ 413 (415)
.+..|++|||++.+.+.|...+... .....+|||||+|||||++|++||+.+++
T Consensus 10 RP~~f~eiiGqe~v~~~L~~~i~~~-------ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C 63 (824)
T PRK07764 10 RPATFAEVIGQEHVTEPLSTALDSG-------RINHAYLFSGPRGCGKTSSARILARSLNC 63 (824)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHhC-------CCCceEEEECCCCCCHHHHHHHHHHHhCc
Confidence 3568999999999988776655431 12234899999999999999999999975
No 116
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=3.9e-06 Score=94.08 Aligned_cols=60 Identities=25% Similarity=0.390 Sum_probs=44.3
Q ss_pred cccCCCccccCChhHHHHHHHHHHH----HHhh-hhhcCCCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 352 EAIKNNGDIILHPSLQRRIQHLAKA----TANT-KIHQAPFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 352 ~~~~~~ddvv~~~~l~~~l~~l~~~----~~~~-k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
....+|++|.|...+...+...... ...+ ..+..|+++||||||||||||++|++||..+
T Consensus 259 ~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~ 323 (1080)
T KOG0732|consen 259 DSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAAC 323 (1080)
T ss_pred hcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhh
Confidence 4456888888777666555554433 2222 3446899999999999999999999999765
No 117
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.07 E-value=5.9e-06 Score=91.64 Aligned_cols=56 Identities=25% Similarity=0.297 Sum_probs=40.5
Q ss_pred cccCChhHHHHHHHHHHH-HHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 359 DIILHPSLQRRIQHLAKA-TANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 359 dvv~~~~l~~~l~~l~~~-~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
.|+|++...+.|...... .........|..++||+||||||||++|++||..++.+
T Consensus 455 ~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~ 511 (731)
T TIGR02639 455 KIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVH 511 (731)
T ss_pred ceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCC
Confidence 388999888855544433 22222334566679999999999999999999998753
No 118
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.06 E-value=4.2e-06 Score=91.02 Aligned_cols=54 Identities=22% Similarity=0.298 Sum_probs=44.3
Q ss_pred ccCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhCC
Q 014938 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSVW 413 (415)
Q Consensus 353 ~~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~ 413 (415)
.+..|++++|++.+...|...+... .-..++|||||||||||++|+++|+.+++
T Consensus 11 RP~~f~~liGq~~i~~~L~~~l~~~-------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c 64 (620)
T PRK14948 11 RPQRFDELVGQEAIATTLKNALISN-------RIAPAYLFTGPRGTGKTSSARILAKSLNC 64 (620)
T ss_pred CCCcHhhccChHHHHHHHHHHHHcC-------CCCceEEEECCCCCChHHHHHHHHHHhcC
Confidence 3568999999999988877665432 12458999999999999999999999876
No 119
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.04 E-value=6.2e-06 Score=86.40 Aligned_cols=61 Identities=18% Similarity=0.361 Sum_probs=39.8
Q ss_pred ccccCCCccccCChhHHHHHHHHHHHHHhhh-hhcCCCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 351 VEAIKNNGDIILHPSLQRRIQHLAKATANTK-IHQAPFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 351 ~~~~~~~ddvv~~~~l~~~l~~l~~~~~~~k-~~~~p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
..+..+||+++..+..............+.. ..+.++.+++||||||||||||+.++|+++
T Consensus 104 l~~~~tFdnFv~g~~N~~a~~~a~~~a~~~~~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l 165 (445)
T PRK12422 104 LDPLMTFANFLVTPENDLPHRILQEFTKVSEQGKGFPFNPIYLFGPEGSGKTHLMQAAVHAL 165 (445)
T ss_pred CCccccccceeeCCcHHHHHHHHHHHHhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHH
Confidence 4567799999855554433222222222111 112346789999999999999999999875
No 120
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.04 E-value=7.5e-06 Score=84.54 Aligned_cols=58 Identities=16% Similarity=0.229 Sum_probs=38.0
Q ss_pred ccccCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 351 VEAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 351 ~~~~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
..+...|++++..+..............+ .+..+.+++||||||||||||++++++++
T Consensus 103 l~~~~tfd~fi~g~~n~~a~~~~~~~~~~---~~~~~n~l~l~G~~G~GKThL~~ai~~~l 160 (405)
T TIGR00362 103 LNPKYTFDNFVVGKSNRLAHAAALAVAEN---PGKAYNPLFIYGGVGLGKTHLLHAIGNEI 160 (405)
T ss_pred CCCCCcccccccCCcHHHHHHHHHHHHhC---cCccCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 34567899966444433333222222221 22345679999999999999999999876
No 121
>PRK05642 DNA replication initiation factor; Validated
Probab=98.04 E-value=8.6e-06 Score=78.13 Aligned_cols=58 Identities=5% Similarity=0.047 Sum_probs=36.1
Q ss_pred ccccCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 351 VEAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 351 ~~~~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
..+..+||+++.... ...+..+..+.. .....+.++++||||+|||||||+.++|+++
T Consensus 12 ~~~~~tfdnF~~~~~-~~a~~~~~~~~~--~~~~~~~~~l~l~G~~G~GKTHLl~a~~~~~ 69 (234)
T PRK05642 12 LRDDATFANYYPGAN-AAALGYVERLCE--ADAGWTESLIYLWGKDGVGRSHLLQAACLRF 69 (234)
T ss_pred CCCcccccccCcCCh-HHHHHHHHHHhh--ccccCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 455678999884332 222222222211 0112235689999999999999999999764
No 122
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.03 E-value=7.2e-06 Score=81.89 Aligned_cols=26 Identities=27% Similarity=0.524 Sum_probs=24.0
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
..+|++||||||||||||+.+||+++
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l 180 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANEL 180 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 35799999999999999999999987
No 123
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.03 E-value=8e-06 Score=82.91 Aligned_cols=57 Identities=18% Similarity=0.149 Sum_probs=39.1
Q ss_pred CCCc-cccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhCC
Q 014938 355 KNNG-DIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSVW 413 (415)
Q Consensus 355 ~~~d-dvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~ 413 (415)
.-|+ +++|+++....+-..+..... ......+-++|+||||||||+||.+|++.++.
T Consensus 47 ~~F~~~~~G~~~~i~~lv~~l~~~a~--g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 47 RFFDHDFFGMEEAIERFVNYFKSAAQ--GLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred cccchhccCcHHHHHHHHHHHHHHHh--cCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 3566 799988877644333333221 11223456789999999999999999998864
No 124
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.03 E-value=5.8e-06 Score=87.52 Aligned_cols=54 Identities=30% Similarity=0.333 Sum_probs=42.2
Q ss_pred ccCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhCC
Q 014938 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSVW 413 (415)
Q Consensus 353 ~~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~ 413 (415)
.+..|++++|++.+...|...+.. +.....+|||||||||||++|+.+|..+++
T Consensus 11 RP~~f~diiGq~~i~~~L~~~i~~-------~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c 64 (486)
T PRK14953 11 RPKFFKEVIGQEIVVRILKNAVKL-------QRVSHAYIFAGPRGTGKTTIARILAKVLNC 64 (486)
T ss_pred CCCcHHHccChHHHHHHHHHHHHc-------CCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 356899999999988866555432 122345789999999999999999998864
No 125
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=98.03 E-value=5.7e-06 Score=90.49 Aligned_cols=63 Identities=22% Similarity=0.321 Sum_probs=50.4
Q ss_pred cccCCCccccCChhHHHHHHHHHHHHHhhh----hhcCCCccEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 352 EAIKNNGDIILHPSLQRRIQHLAKATANTK----IHQAPFRNMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 352 ~~~~~~ddvv~~~~l~~~l~~l~~~~~~~k----~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
.....|+++.+.+.....+..+..+..... .+...++||||+||||||||+++++++.++|+|
T Consensus 146 ~~~~~~~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~ 212 (644)
T PRK10733 146 QIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVP 212 (644)
T ss_pred hhhCcHHHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 345679999999999888888877644322 223456899999999999999999999999876
No 126
>PRK08727 hypothetical protein; Validated
Probab=98.01 E-value=8.2e-06 Score=78.17 Aligned_cols=54 Identities=22% Similarity=0.262 Sum_probs=35.6
Q ss_pred ccccCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 351 VEAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 351 ~~~~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
..+..+|+++++.+.. .+..+..... +.....++||||||||||||+.++|+.+
T Consensus 12 ~~~~~~f~~f~~~~~n--~~~~~~~~~~-----~~~~~~l~l~G~~G~GKThL~~a~~~~~ 65 (233)
T PRK08727 12 YPSDQRFDSYIAAPDG--LLAQLQALAA-----GQSSDWLYLSGPAGTGKTHLALALCAAA 65 (233)
T ss_pred CCCcCChhhccCCcHH--HHHHHHHHHh-----ccCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4456689999876653 2222211111 1233469999999999999999998763
No 127
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=5.5e-06 Score=82.06 Aligned_cols=100 Identities=18% Similarity=0.324 Sum_probs=58.0
Q ss_pred ceecccchhhhhhhHHHHHhCCCcchhhcccCCCCccchhHHHHHHHhhhcccCCCCCCccccCCCccccCChhHHHHHH
Q 014938 292 GIYTTREGARVTWGYVNRILGQPSLIRESSIGKFPWSGLLSQAMNKVIRNKTSAGTAGPVEAIKNNGDIILHPSLQRRIQ 371 (415)
Q Consensus 292 gvytak~~~~v~~~~ve~~Lg~pslvRetsr~~~p~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ddvv~~~~l~~~l~ 371 (415)
++|-..+........+..-+.... ...+...+|....+...++.+ |||++..++.|.
T Consensus 18 ~v~ICdeCielc~~ii~ee~~~~~--~~~~~~~lPtP~eik~~Ld~Y---------------------VIGQe~AKKvLs 74 (408)
T COG1219 18 GVYICDECIELCNDIIREELKEAL--DEKELSELPTPKEIKAHLDEY---------------------VIGQEQAKKVLS 74 (408)
T ss_pred CceehHHHHHHHHHHHHHhhhhhc--cchhhccCCChHHHHHHhhhh---------------------eecchhhhceee
Confidence 345555555555555554444222 223333455545555555544 778887776442
Q ss_pred -----HHHHHHHhhhhhc--CCCccEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 372 -----HLAKATANTKIHQ--APFRNMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 372 -----~l~~~~~~~k~~~--~p~r~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
+..+...+..... ....||||.||+|||||+||+.||+.+++|
T Consensus 75 VAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVP 124 (408)
T COG1219 75 VAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVP 124 (408)
T ss_pred eeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 1111111101010 225699999999999999999999999998
No 128
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.01 E-value=7.2e-06 Score=87.44 Aligned_cols=54 Identities=28% Similarity=0.298 Sum_probs=42.6
Q ss_pred ccCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhCC
Q 014938 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSVW 413 (415)
Q Consensus 353 ~~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~ 413 (415)
.+..|++|+|++.+...|...+.. +..+..+|||||||||||++|+++++.+..
T Consensus 9 RP~~fdeiiGqe~v~~~L~~~I~~-------grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c 62 (535)
T PRK08451 9 RPKHFDELIGQESVSKTLSLALDN-------NRLAHAYLFSGLRGSGKTSSARIFARALVC 62 (535)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHc-------CCCCeeEEEECCCCCcHHHHHHHHHHHhcC
Confidence 356899999999998877665533 222345699999999999999999998753
No 129
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=6.5e-06 Score=91.58 Aligned_cols=152 Identities=21% Similarity=0.239 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhhHHHHHHHHHhhhhHHHHHhhhhhhhhhHHHHHHhhccc
Q 014938 197 QIQAQQRLTEKERAEIERETIRVKAMAEAEGRAHEAKLTEDHNRRMLIERINGEREKWLAAINTTFSHIEEGVRSLLTDR 276 (415)
Q Consensus 197 ~~~~~r~~~e~e~~~l~~~~~~~k~~ae~~~r~~~~r~n~dl~le~i~~ka~e~r~~~le~ik~~~~~lg~gl~all~D~ 276 (415)
..+++...|..++..+++..-.+...++... +...+.-.|+ .++.++++..++ ++...+.. |.
T Consensus 461 ~~~~l~~~~~~~~s~~~~l~~~~~~~~~~~~-~~k~~r~~d~------~~~~~l~~~~~p--------~~~~~~~~--~~ 523 (898)
T KOG1051|consen 461 TQQPLSASVDSERSVIEELKLKKNSLDRNSL-LAKAHRPNDY------TRETDLRYGRIP--------DELSEKSN--DN 523 (898)
T ss_pred ccccchhhhccchhHHhhhccccCCcccchh-hhcccCCCCc------chhhhccccccc--------hhhhhhcc--cc
Confidence 3456777888888888888777777877777 8888889999 889999999999 22221222 21
Q ss_pred cceeeeecccceee--eceecccchhhhhhhHHHHHhCCCcchhhcccCCCCccchhHHHHHHHhhhcccCCCCCCcccc
Q 014938 277 NKLVMTVGGATALA--AGIYTTREGARVTWGYVNRILGQPSLIRESSIGKFPWSGLLSQAMNKVIRNKTSAGTAGPVEAI 354 (415)
Q Consensus 277 ~klv~~v~g~t~La--vgvytak~~~~v~~~~ve~~Lg~pslvRetsr~~~p~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 354 (415)
.. +...|+ +..|+..+.......+-++++. +...+..
T Consensus 524 ~~------~~~~i~~~~s~~tgip~~~~~~~e~~~l~~------------------L~~~L~~----------------- 562 (898)
T KOG1051|consen 524 QG------GESDISEVVSRWTGIPVDRLAEAEAERLKK------------------LEERLHE----------------- 562 (898)
T ss_pred cC------CccchhhhhhhhcCCchhhhhhhHHHHHHH------------------HHHHHHh-----------------
Confidence 11 333333 4445544444443333333222 2222222
Q ss_pred CCCccccCChhHHHHHHH-HHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 355 KNNGDIILHPSLQRRIQH-LAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 355 ~~~ddvv~~~~l~~~l~~-l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
.|+|+++....|.. +..+....+.. .|.-.+||.||.|+|||-||++||..+
T Consensus 563 ----~V~gQ~eAv~aIa~AI~~sr~gl~~~-~~~awflflGpdgvGKt~lAkaLA~~~ 615 (898)
T KOG1051|consen 563 ----RVIGQDEAVAAIAAAIRRSRAGLKDP-NPDAWFLFLGPDGVGKTELAKALAEYV 615 (898)
T ss_pred ----hccchHHHHHHHHHHHHhhhcccCCC-CCCeEEEEECCCchhHHHHHHHHHHHH
Confidence 28888888885444 33344333333 567789999999999999999999765
No 130
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=98.00 E-value=9.7e-06 Score=83.81 Aligned_cols=55 Identities=25% Similarity=0.378 Sum_probs=39.4
Q ss_pred ccCChhHHHHHHHHHHHHH-hhhh--h---cCCCccEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 360 IILHPSLQRRIQHLAKATA-NTKI--H---QAPFRNMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 360 vv~~~~l~~~l~~l~~~~~-~~k~--~---~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
|+|++..++.+...+...+ .... + ..++.||||+||||||||++|++||..+++|
T Consensus 17 IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~ 77 (443)
T PRK05201 17 IIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAP 77 (443)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCCh
Confidence 8899998886644432211 1100 0 1225899999999999999999999999876
No 131
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=97.99 E-value=9.2e-06 Score=84.16 Aligned_cols=55 Identities=22% Similarity=0.324 Sum_probs=38.2
Q ss_pred ccCChhHHHHHHHHH-HHHHhhhh---hc------CCCccEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 360 IILHPSLQRRIQHLA-KATANTKI---HQ------APFRNMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 360 vv~~~~l~~~l~~l~-~~~~~~k~---~~------~p~r~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
|+|++..++.+.... ++...... .. .+..+|||+||||||||++|++||..+++|
T Consensus 79 ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~p 143 (413)
T TIGR00382 79 VIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVP 143 (413)
T ss_pred ecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCC
Confidence 789998888554322 22222111 00 124689999999999999999999998876
No 132
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.98 E-value=1.1e-05 Score=78.01 Aligned_cols=55 Identities=16% Similarity=0.228 Sum_probs=34.8
Q ss_pred cCCCccccCCh-hHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 354 IKNNGDIILHP-SLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 354 ~~~~ddvv~~~-~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
..+|+++...+ .....+..+.....+. .....+++|+||||||||||+.+||+++
T Consensus 68 ~~tFdnf~~~~~~q~~al~~a~~~~~~~---~~~~~~~~l~G~~GtGKThLa~aia~~l 123 (244)
T PRK07952 68 NCSFENYRVECEGQMNALSKARQYVEEF---DGNIASFIFSGKPGTGKNHLAAAICNEL 123 (244)
T ss_pred CCccccccCCCchHHHHHHHHHHHHHhh---ccCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 45777775433 2222333333222221 1123589999999999999999999987
No 133
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=97.96 E-value=2.4e-06 Score=91.44 Aligned_cols=52 Identities=25% Similarity=0.377 Sum_probs=39.6
Q ss_pred cccCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 352 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 352 ~~~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
..+..|++++|+......+...+. ...+.+||||||||||||++|+++...+
T Consensus 59 ~rp~~f~~iiGqs~~i~~l~~al~--------~~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 59 TRPKSFDEIIGQEEGIKALKAALC--------GPNPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred hCcCCHHHeeCcHHHHHHHHHHHh--------CCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 346789999999988776653321 1124699999999999999999998653
No 134
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.95 E-value=7.1e-06 Score=75.58 Aligned_cols=25 Identities=52% Similarity=0.899 Sum_probs=21.6
Q ss_pred CccEEEecCCCCcHHHHHHHHHHHh
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
..|++|+|||||||||||.++++++
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~ 71 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEA 71 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHh
Confidence 4699999999999999999999764
No 135
>PHA02244 ATPase-like protein
Probab=97.95 E-value=1.6e-05 Score=80.91 Aligned_cols=28 Identities=25% Similarity=0.294 Sum_probs=25.8
Q ss_pred CccEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
..+|||+||||||||++|++||..+|.|
T Consensus 119 ~~PVLL~GppGtGKTtLA~aLA~~lg~p 146 (383)
T PHA02244 119 NIPVFLKGGAGSGKNHIAEQIAEALDLD 146 (383)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 3589999999999999999999999876
No 136
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.95 E-value=1.4e-05 Score=76.00 Aligned_cols=56 Identities=20% Similarity=0.334 Sum_probs=34.2
Q ss_pred ccCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 353 ~~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+..+||++|..+.....+........+ .+..+..++||||+|+|||||..++++++
T Consensus 3 ~~~tFdnfv~g~~N~~a~~~~~~ia~~---~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~ 58 (219)
T PF00308_consen 3 PKYTFDNFVVGESNELAYAAAKAIAEN---PGERYNPLFLYGPSGLGKTHLLQAIANEA 58 (219)
T ss_dssp TT-SCCCS--TTTTHHHHHHHHHHHHS---TTTSSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCccccCCcCCcHHHHHHHHHHHHhc---CCCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 456899987555444333222221111 12234568999999999999999999874
No 137
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=97.90 E-value=1.6e-05 Score=79.82 Aligned_cols=57 Identities=26% Similarity=0.282 Sum_probs=44.1
Q ss_pred CCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 355 KNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 355 ~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
..=|.+||+.+..+...-+...... +....++|||.||||||||-||-++|++||-|
T Consensus 36 ~~~dG~VGQ~~AReAaGvIv~mik~---gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~d 92 (450)
T COG1224 36 FIGDGLVGQEEAREAAGVIVKMIKQ---GKMAGRGILIVGPPGTGKTALAMGIARELGED 92 (450)
T ss_pred EcCCcccchHHHHHhhhHHHHHHHh---CcccccEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 3446689999988866655554443 23347899999999999999999999999954
No 138
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.87 E-value=2e-05 Score=79.50 Aligned_cols=25 Identities=48% Similarity=0.798 Sum_probs=23.2
Q ss_pred CccEEEecCCCCcHHHHHHHHHHHh
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
..|++||||||||||||+.+||+++
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l 207 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKEL 207 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHH
Confidence 4799999999999999999999875
No 139
>PRK09087 hypothetical protein; Validated
Probab=97.86 E-value=2.1e-05 Score=75.16 Aligned_cols=56 Identities=21% Similarity=0.264 Sum_probs=38.0
Q ss_pred ccccCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 351 VEAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 351 ~~~~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
..+..+|++++..+.....+..+..+.. .+.+.++||||+|||||||+.++|...+
T Consensus 14 ~~~~~~~~~Fi~~~~N~~a~~~l~~~~~------~~~~~l~l~G~~GsGKThLl~~~~~~~~ 69 (226)
T PRK09087 14 HDPAYGRDDLLVTESNRAAVSLVDHWPN------WPSPVVVLAGPVGSGKTHLASIWREKSD 69 (226)
T ss_pred CCCCCChhceeecCchHHHHHHHHhccc------CCCCeEEEECCCCCCHHHHHHHHHHhcC
Confidence 4456689999865544444443333221 1233599999999999999999997654
No 140
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=97.86 E-value=2.1e-05 Score=79.75 Aligned_cols=57 Identities=25% Similarity=0.267 Sum_probs=41.8
Q ss_pred cCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhCC
Q 014938 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSVW 413 (415)
Q Consensus 354 ~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~ 413 (415)
....+.+||+.+..+...-+...-...+ -..++|||.||||||||-+|-++|+++|-
T Consensus 20 ~~~~~GlVGQ~~AReAagiiv~mIk~~K---~aGr~iLiaGppGtGKTAlA~~ia~eLG~ 76 (398)
T PF06068_consen 20 RYIADGLVGQEKAREAAGIIVDMIKEGK---IAGRAILIAGPPGTGKTALAMAIAKELGE 76 (398)
T ss_dssp -SEETTEES-HHHHHHHHHHHHHHHTT-----TT-EEEEEE-TTSSHHHHHHHHHHHCTT
T ss_pred eeccccccChHHHHHHHHHHHHHHhccc---ccCcEEEEeCCCCCCchHHHHHHHHHhCC
Confidence 3445679999999997776666554333 34689999999999999999999999994
No 141
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.85 E-value=1.7e-05 Score=87.99 Aligned_cols=50 Identities=24% Similarity=0.245 Sum_probs=39.0
Q ss_pred cCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 354 ~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
...+|+++|.+.....+-.++... ...|+|||||||||||+++++||+.+
T Consensus 178 ~~~l~~~igr~~ei~~~~~~L~~~--------~~~n~lL~G~pG~GKT~l~~~la~~~ 227 (731)
T TIGR02639 178 NGKIDPLIGREDELERTIQVLCRR--------KKNNPLLVGEPGVGKTAIAEGLALRI 227 (731)
T ss_pred cCCCCcccCcHHHHHHHHHHHhcC--------CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 557888999988777544443221 24699999999999999999999876
No 142
>PRK06921 hypothetical protein; Provisional
Probab=97.85 E-value=2e-05 Score=77.25 Aligned_cols=25 Identities=28% Similarity=0.477 Sum_probs=23.2
Q ss_pred CccEEEecCCCCcHHHHHHHHHHHh
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
..+++||||||||||||+.+||+++
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l 141 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANEL 141 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH
Confidence 5689999999999999999999875
No 143
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.83 E-value=2.1e-05 Score=83.76 Aligned_cols=58 Identities=21% Similarity=0.323 Sum_probs=40.1
Q ss_pred cCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 354 ~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
+...+|++.++.-.+.|..++... -.+..+.+-+||+||||||||++.++||+++|++
T Consensus 15 P~~~~eLavhkkKv~eV~~wl~~~---~~~~~~~~iLlLtGP~G~GKtttv~~La~elg~~ 72 (519)
T PF03215_consen 15 PKTLDELAVHKKKVEEVRSWLEEM---FSGSSPKRILLLTGPSGCGKTTTVKVLAKELGFE 72 (519)
T ss_pred CCCHHHhhccHHHHHHHHHHHHHH---hccCCCcceEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 456777887775554444433322 1222334567789999999999999999999974
No 144
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.81 E-value=2.6e-05 Score=84.85 Aligned_cols=53 Identities=23% Similarity=0.310 Sum_probs=42.3
Q ss_pred cCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhCC
Q 014938 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSVW 413 (415)
Q Consensus 354 ~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~ 413 (415)
+..|++|+|++.+...|...+.. +..+..+|||||+|+|||++|+.+|..+.+
T Consensus 13 P~~f~~viGq~~~~~~L~~~i~~-------~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c 65 (614)
T PRK14971 13 PSTFESVVGQEALTTTLKNAIAT-------NKLAHAYLFCGPRGVGKTTCARIFAKTINC 65 (614)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------CCCCeeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 56899999999998876655432 223345899999999999999999998864
No 145
>PRK13531 regulatory ATPase RavA; Provisional
Probab=97.79 E-value=1.9e-05 Score=83.05 Aligned_cols=43 Identities=21% Similarity=0.294 Sum_probs=34.2
Q ss_pred ccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 360 IILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 360 vv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
|+|.+++.+.+...+.+ ..||||+||||||||++|++|+..++
T Consensus 22 i~gre~vI~lll~aala----------g~hVLL~GpPGTGKT~LAraLa~~~~ 64 (498)
T PRK13531 22 LYERSHAIRLCLLAALS----------GESVFLLGPPGIAKSLIARRLKFAFQ 64 (498)
T ss_pred ccCcHHHHHHHHHHHcc----------CCCEEEECCCChhHHHHHHHHHHHhc
Confidence 77888777755544433 35999999999999999999998765
No 146
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.79 E-value=3.5e-05 Score=74.32 Aligned_cols=58 Identities=17% Similarity=0.239 Sum_probs=43.6
Q ss_pred ccccCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 351 VEAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 351 ~~~~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
..+...+++++|.+..++.|..-....- .+.|..|+||||+.|||||+++|+|.++.+
T Consensus 20 ~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl----~G~pannvLL~G~rGtGKSSlVkall~~y~ 77 (249)
T PF05673_consen 20 HPDPIRLDDLIGIERQKEALIENTEQFL----QGLPANNVLLWGARGTGKSSLVKALLNEYA 77 (249)
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHH----cCCCCcceEEecCCCCCHHHHHHHHHHHHh
Confidence 4456788999998887774433222211 246889999999999999999999998764
No 147
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.77 E-value=3.4e-05 Score=80.48 Aligned_cols=47 Identities=30% Similarity=0.426 Sum_probs=34.4
Q ss_pred CccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhCC
Q 014938 357 NGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSVW 413 (415)
Q Consensus 357 ~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~ 413 (415)
++++++.+...+.+...+. ..+|++|+||||||||++|+.||..++.
T Consensus 174 l~d~~i~e~~le~l~~~L~----------~~~~iil~GppGtGKT~lA~~la~~l~~ 220 (459)
T PRK11331 174 LNDLFIPETTIETILKRLT----------IKKNIILQGPPGVGKTFVARRLAYLLTG 220 (459)
T ss_pred hhcccCCHHHHHHHHHHHh----------cCCCEEEECCCCCCHHHHHHHHHHHhcC
Confidence 6667766665554432222 1469999999999999999999988753
No 148
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=97.75 E-value=3.8e-05 Score=77.13 Aligned_cols=28 Identities=32% Similarity=0.478 Sum_probs=26.4
Q ss_pred CccEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
.++|||.||||||||++++.||..+|+|
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~~~ 91 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLNWP 91 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHCCC
Confidence 4689999999999999999999999987
No 149
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.75 E-value=5.1e-05 Score=66.14 Aligned_cols=48 Identities=27% Similarity=0.355 Sum_probs=33.4
Q ss_pred ccCChhHHHHH-HHHHHHHHhhhhhcCCCccEE--EecCCCCcHHHHHHHHHHHh
Q 014938 360 IILHPSLQRRI-QHLAKATANTKIHQAPFRNML--FYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 360 vv~~~~l~~~l-~~l~~~~~~~k~~~~p~r~vL--l~GPPGTGKT~lAkaLA~~l 411 (415)
+.|++-+.+.| ..+..+..+ ..|.+.++ |+||||||||++++.||+.+
T Consensus 27 l~GQhla~~~v~~ai~~~l~~----~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 27 LFGQHLAVEVVVNAIKGHLAN----PNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred ccCcHHHHHHHHHHHHHHHcC----CCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 78888888744 444333322 23444444 89999999999999999874
No 150
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.72 E-value=4.6e-05 Score=80.04 Aligned_cols=55 Identities=15% Similarity=0.269 Sum_probs=37.1
Q ss_pred cCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 354 ~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
..+|++++..+.....+...... ....+.++.+++||||||||||||+.++++++
T Consensus 111 ~~tFdnFv~g~~n~~A~~aa~~~---a~~~~~~~npl~i~G~~G~GKTHLl~Ai~~~l 165 (450)
T PRK14087 111 ENTFENFVIGSSNEQAFIAVQTV---SKNPGISYNPLFIYGESGMGKTHLLKAAKNYI 165 (450)
T ss_pred ccchhcccCCCcHHHHHHHHHHH---HhCcCcccCceEEECCCCCcHHHHHHHHHHHH
Confidence 57899988656543333222111 12223346789999999999999999999865
No 151
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.71 E-value=4.5e-05 Score=82.33 Aligned_cols=58 Identities=14% Similarity=0.229 Sum_probs=37.7
Q ss_pred ccccCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 351 VEAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 351 ~~~~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
.....+|++++..+...-.+........+ ....+..++||||+|||||||+.+||+++
T Consensus 281 L~~~~TFDnFvvG~sN~~A~aaa~avae~---~~~~~NpL~LyG~sGsGKTHLL~AIa~~a 338 (617)
T PRK14086 281 LNPKYTFDTFVIGASNRFAHAAAVAVAEA---PAKAYNPLFIYGESGLGKTHLLHAIGHYA 338 (617)
T ss_pred CCCCCCHhhhcCCCccHHHHHHHHHHHhC---ccccCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 34567899998666544222111111111 11234459999999999999999999976
No 152
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=97.71 E-value=5.5e-05 Score=77.36 Aligned_cols=54 Identities=19% Similarity=0.241 Sum_probs=42.5
Q ss_pred ccCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhCC
Q 014938 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSVW 413 (415)
Q Consensus 353 ~~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~ 413 (415)
.+..|++|+|++.+...|...... +..+..+||+||+|+||+++|.++|+.+-.
T Consensus 14 ~P~~~~~iiGq~~~~~~L~~~~~~-------~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc 67 (365)
T PRK07471 14 HPRETTALFGHAAAEAALLDAYRS-------GRLHHAWLIGGPQGIGKATLAYRMARFLLA 67 (365)
T ss_pred CCCchhhccChHHHHHHHHHHHHc-------CCCCceEEEECCCCCCHHHHHHHHHHHHhC
Confidence 456889999999988877655433 222446999999999999999999998753
No 153
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=97.69 E-value=4e-05 Score=83.30 Aligned_cols=51 Identities=29% Similarity=0.352 Sum_probs=41.5
Q ss_pred ccCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhCC
Q 014938 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSVW 413 (415)
Q Consensus 353 ~~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~ 413 (415)
+..-|++|+|+.++...+...+.. .+|++|+||||||||++|++|+..++.
T Consensus 13 ~~~~~~~viG~~~a~~~l~~a~~~----------~~~~ll~G~pG~GKT~la~~la~~l~~ 63 (608)
T TIGR00764 13 PERLIDQVIGQEEAVEIIKKAAKQ----------KRNVLLIGEPGVGKSMLAKAMAELLPD 63 (608)
T ss_pred chhhHhhccCHHHHHHHHHHHHHc----------CCCEEEECCCCCCHHHHHHHHHHHcCc
Confidence 446788899999988877655432 249999999999999999999998863
No 154
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=97.69 E-value=8.6e-05 Score=75.03 Aligned_cols=52 Identities=19% Similarity=0.292 Sum_probs=35.6
Q ss_pred CCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 356 NNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 356 ~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
..+++++.+.-.+.|...+.... . +..+.++++|||||||||++++.++.++
T Consensus 13 ~p~~l~gRe~e~~~l~~~l~~~~---~-~~~~~~i~I~G~~GtGKT~l~~~~~~~l 64 (365)
T TIGR02928 13 VPDRIVHRDEQIEELAKALRPIL---R-GSRPSNVFIYGKTGTGKTAVTKYVMKEL 64 (365)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHH---c-CCCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 33457777765555544443221 1 2334689999999999999999999865
No 155
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.67 E-value=5e-05 Score=85.64 Aligned_cols=50 Identities=22% Similarity=0.305 Sum_probs=38.4
Q ss_pred cCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 354 ~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
...++.|+|.+....++-.++... ...|+||+||||||||+++.+||..+
T Consensus 174 ~~~l~~vigr~~ei~~~i~iL~r~--------~~~n~lL~G~pGvGKT~l~~~la~~i 223 (857)
T PRK10865 174 QGKLDPVIGRDEEIRRTIQVLQRR--------TKNNPVLIGEPGVGKTAIVEGLAQRI 223 (857)
T ss_pred cCCCCcCCCCHHHHHHHHHHHhcC--------CcCceEEECCCCCCHHHHHHHHHHHh
Confidence 457888999988655444443221 24599999999999999999999886
No 156
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.65 E-value=4.2e-05 Score=83.21 Aligned_cols=60 Identities=20% Similarity=0.333 Sum_probs=44.2
Q ss_pred cccCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 352 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 352 ~~~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
..+..|+++++++.....|..++.... ....+.+-++|+||||||||++++.||+.++.+
T Consensus 78 yrP~~ldel~~~~~ki~~l~~~l~~~~---~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~ 137 (637)
T TIGR00602 78 YKPETQHELAVHKKKIEEVETWLKAQV---LENAPKRILLITGPSGCGKSTTIKILSKELGIQ 137 (637)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHhcc---cccCCCcEEEEECCCCCCHHHHHHHHHHHhhhH
Confidence 456789999999988776655543321 112333458899999999999999999998753
No 157
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.63 E-value=5.7e-05 Score=84.92 Aligned_cols=50 Identities=24% Similarity=0.318 Sum_probs=39.0
Q ss_pred cCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 354 ~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
...|+.++|.+...+++..++.. ....|+||+||||||||+++..||..+
T Consensus 175 ~~~~~~~igr~~ei~~~~~~L~r--------~~~~n~lL~G~pGvGKTal~~~la~~i 224 (821)
T CHL00095 175 DGNLDPVIGREKEIERVIQILGR--------RTKNNPILIGEPGVGKTAIAEGLAQRI 224 (821)
T ss_pred cCCCCCCCCcHHHHHHHHHHHcc--------cccCCeEEECCCCCCHHHHHHHHHHHH
Confidence 34678899988877766555432 135699999999999999999999876
No 158
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=97.60 E-value=5e-05 Score=77.13 Aligned_cols=52 Identities=13% Similarity=0.171 Sum_probs=40.3
Q ss_pred cccCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 352 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 352 ~~~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
.....|++|||+++++..|...+.. ....+|||+||+|||||+++++++..+
T Consensus 11 ~~~~pf~~ivGq~~~k~al~~~~~~--------p~~~~vli~G~~GtGKs~~ar~~~~~l 62 (350)
T CHL00081 11 RPVFPFTAIVGQEEMKLALILNVID--------PKIGGVMIMGDRGTGKSTTIRALVDLL 62 (350)
T ss_pred CCCCCHHHHhChHHHHHHHHHhccC--------CCCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 3466899999999988866433322 124689999999999999999998765
No 159
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.60 E-value=5.5e-05 Score=82.37 Aligned_cols=50 Identities=22% Similarity=0.380 Sum_probs=37.1
Q ss_pred cCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 354 ~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+..|++++|+......+...+.. ..+.++||+||||||||++|+++.+.+
T Consensus 150 p~~~~~iiGqs~~~~~l~~~ia~--------~~~~~vlL~Gp~GtGKTTLAr~i~~~~ 199 (615)
T TIGR02903 150 PRAFSEIVGQERAIKALLAKVAS--------PFPQHIILYGPPGVGKTTAARLALEEA 199 (615)
T ss_pred cCcHHhceeCcHHHHHHHHHHhc--------CCCCeEEEECCCCCCHHHHHHHHHHhh
Confidence 56888999988877654322211 124589999999999999999998665
No 160
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=7.2e-05 Score=80.18 Aligned_cols=31 Identities=48% Similarity=0.849 Sum_probs=28.3
Q ss_pred hhcCCCccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 382 IHQAPFRNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 382 ~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
.+..|++++|+|||||||||++++++|++.|
T Consensus 213 ~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~ 243 (693)
T KOG0730|consen 213 IGIKPPRGLLLYGPPGTGKTFLVRAVANEYG 243 (693)
T ss_pred cCCCCCCCccccCCCCCChHHHHHHHHHHhC
Confidence 4457899999999999999999999999987
No 161
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=97.59 E-value=8e-05 Score=75.80 Aligned_cols=54 Identities=20% Similarity=0.298 Sum_probs=43.2
Q ss_pred ccCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhCC
Q 014938 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSVW 413 (415)
Q Consensus 353 ~~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~ 413 (415)
.+..|++++|+..+...+....... ..+..+||+||+|+|||++|..+|+.+..
T Consensus 18 ~P~~~~~l~Gh~~a~~~L~~a~~~g-------rl~ha~L~~G~~G~GKttlA~~lA~~Llc 71 (351)
T PRK09112 18 SPSENTRLFGHEEAEAFLAQAYREG-------KLHHALLFEGPEGIGKATLAFHLANHILS 71 (351)
T ss_pred CCCchhhccCcHHHHHHHHHHHHcC-------CCCeeEeeECCCCCCHHHHHHHHHHHHcC
Confidence 4668899999999888776555432 22456999999999999999999998865
No 162
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=97.58 E-value=7.6e-05 Score=81.35 Aligned_cols=51 Identities=27% Similarity=0.369 Sum_probs=41.5
Q ss_pred cccCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 352 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 352 ~~~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
.++..|++|+++.++...|...+.. .+++||+||||||||++|++|+..+.
T Consensus 25 ~~~~~~~~vigq~~a~~~L~~~~~~----------~~~~l~~G~~G~GKttla~~l~~~l~ 75 (637)
T PRK13765 25 VPERLIDQVIGQEHAVEVIKKAAKQ----------RRHVMMIGSPGTGKSMLAKAMAELLP 75 (637)
T ss_pred cCcccHHHcCChHHHHHHHHHHHHh----------CCeEEEECCCCCcHHHHHHHHHHHcC
Confidence 3467899999999988877654432 24899999999999999999998765
No 163
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=97.58 E-value=0.00014 Score=74.42 Aligned_cols=52 Identities=21% Similarity=0.325 Sum_probs=33.1
Q ss_pred CCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 356 NNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 356 ~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
..+.+++.++....|...+. ..-. +..+.++++|||||||||++++.+++++
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~---~~~~-~~~~~~~lI~G~~GtGKT~l~~~v~~~l 79 (394)
T PRK00411 28 VPENLPHREEQIEELAFALR---PALR-GSRPLNVLIYGPPGTGKTTTVKKVFEEL 79 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHH---HHhC-CCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 33445555544444433332 2111 2335689999999999999999999876
No 164
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.57 E-value=9.6e-05 Score=79.07 Aligned_cols=55 Identities=13% Similarity=0.143 Sum_probs=39.1
Q ss_pred CCCccccCChhHHHHHHHHHHH-HHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 355 KNNGDIILHPSLQRRIQHLAKA-TANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 355 ~~~ddvv~~~~l~~~l~~l~~~-~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
.-|+|+.|.++.+++|-..... .... ....+-++|+||||+|||+||++|+..+.
T Consensus 73 ~fF~d~yGlee~ieriv~~l~~Aa~gl---~~~~~IL~LvGPpG~GKSsLa~~la~~le 128 (644)
T PRK15455 73 PAFEEFYGMEEAIEQIVSYFRHAAQGL---EEKKQILYLLGPVGGGKSSLAERLKSLME 128 (644)
T ss_pred cchhcccCcHHHHHHHHHHHHHHHHhc---CCCCceEEEecCCCCCchHHHHHHHHHHH
Confidence 3577888888888855544422 2211 22345788999999999999999998653
No 165
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=97.56 E-value=0.0001 Score=74.02 Aligned_cols=28 Identities=43% Similarity=0.627 Sum_probs=26.1
Q ss_pred CccEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
.+++||-||||||||++|+.+|..+|+|
T Consensus 43 ~~~vll~G~PG~gKT~la~~lA~~l~~~ 70 (329)
T COG0714 43 GGHVLLEGPPGVGKTLLARALARALGLP 70 (329)
T ss_pred CCCEEEECCCCccHHHHHHHHHHHhCCC
Confidence 4699999999999999999999999976
No 166
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.55 E-value=9.1e-05 Score=83.50 Aligned_cols=50 Identities=18% Similarity=0.195 Sum_probs=37.8
Q ss_pred cCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 354 ~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+..++.|+|.+....++-.+... ....|+||+||||||||+++..||+.+
T Consensus 183 ~~~ld~~iGr~~ei~~~i~~l~r--------~~~~n~lLvG~pGvGKTal~~~La~~i 232 (852)
T TIGR03345 183 EGKIDPVLGRDDEIRQMIDILLR--------RRQNNPILTGEAGVGKTAVVEGLALRI 232 (852)
T ss_pred CCCCCcccCCHHHHHHHHHHHhc--------CCcCceeEECCCCCCHHHHHHHHHHHH
Confidence 56788999998865544332211 124599999999999999999999876
No 167
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.53 E-value=0.00012 Score=75.63 Aligned_cols=59 Identities=15% Similarity=0.265 Sum_probs=43.3
Q ss_pred CccccCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 350 PVEAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 350 ~~~~~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
...+..+|+++|..+...-.......+.. .++.++.-++||||+|.|||||..++|++.
T Consensus 79 ~l~~~ytFdnFv~g~~N~~A~aa~~~va~---~~g~~~nplfi~G~~GlGKTHLl~Aign~~ 137 (408)
T COG0593 79 GLNPKYTFDNFVVGPSNRLAYAAAKAVAE---NPGGAYNPLFIYGGVGLGKTHLLQAIGNEA 137 (408)
T ss_pred cCCCCCchhheeeCCchHHHHHHHHHHHh---ccCCcCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 35678899999987776554433333322 233467789999999999999999999875
No 168
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.51 E-value=0.00011 Score=82.89 Aligned_cols=50 Identities=22% Similarity=0.288 Sum_probs=38.1
Q ss_pred cCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 354 ~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
...++.++|.+....++..++.. ....|+||+||||||||+++.+||..+
T Consensus 169 ~~~~~~~igr~~ei~~~~~~l~r--------~~~~n~lL~G~pGvGKT~l~~~la~~i 218 (852)
T TIGR03346 169 EGKLDPVIGRDEEIRRTIQVLSR--------RTKNNPVLIGEPGVGKTAIVEGLAQRI 218 (852)
T ss_pred CCCCCcCCCcHHHHHHHHHHHhc--------CCCCceEEEcCCCCCHHHHHHHHHHHH
Confidence 55788899988865544443322 224699999999999999999999875
No 169
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=0.00021 Score=71.58 Aligned_cols=55 Identities=24% Similarity=0.328 Sum_probs=40.4
Q ss_pred ccCChhHHHHHHHHHHHHHhh-h-----hhcCCCccEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 360 IILHPSLQRRIQHLAKATANT-K-----IHQAPFRNMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 360 vv~~~~l~~~l~~l~~~~~~~-k-----~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
|||+.+.++.+.-.+.-.|.- . ..-..|+|||+.||+|+|||.+|+.||...|.|
T Consensus 17 IIGQ~~AKkaVAIALRNR~RR~qL~~~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~aP 77 (444)
T COG1220 17 IIGQDEAKKAVAIALRNRWRRMQLEEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAGAP 77 (444)
T ss_pred hcCcHHHHHHHHHHHHHHHHHHhcCHHHhhccCccceEEECCCCCcHHHHHHHHHHHhCCC
Confidence 789999888553332222211 1 112457999999999999999999999999987
No 170
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=97.47 E-value=0.00017 Score=71.12 Aligned_cols=55 Identities=24% Similarity=0.286 Sum_probs=40.7
Q ss_pred CCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhCC
Q 014938 356 NNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSVW 413 (415)
Q Consensus 356 ~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~ 413 (415)
.-+.+||+....+...-+.......+ ...|.+||.||||||||-+|-++++++|-
T Consensus 36 ~~~g~vGQ~~AReAagiivdlik~Kk---maGravLlaGppgtGKTAlAlaisqELG~ 90 (456)
T KOG1942|consen 36 VAAGFVGQENAREAAGIIVDLIKSKK---MAGRAVLLAGPPGTGKTALALAISQELGP 90 (456)
T ss_pred cccccccchhhhhhhhHHHHHHHhhh---ccCcEEEEecCCCCchhHHHHHHHHHhCC
Confidence 34458888888875554444333222 23689999999999999999999999984
No 171
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=97.41 E-value=7.3e-05 Score=74.25 Aligned_cols=58 Identities=28% Similarity=0.317 Sum_probs=42.9
Q ss_pred CCCCccccCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 347 TAGPVEAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 347 ~~~~~~~~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
|-+....+..+++++++.++...+..+. ..++.| |+|||||||||||...-+.|..+-
T Consensus 30 pwvekyrP~~l~dv~~~~ei~st~~~~~------~~~~lP--h~L~YgPPGtGktsti~a~a~~ly 87 (360)
T KOG0990|consen 30 PWVEKYRPPFLGIVIKQEPIWSTENRYS------GMPGLP--HLLFYGPPGTGKTSTILANARDFY 87 (360)
T ss_pred CCccCCCCchhhhHhcCCchhhHHHHhc------cCCCCC--cccccCCCCCCCCCchhhhhhhhc
Confidence 3344566778889999998877666552 222334 999999999999998888887654
No 172
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=97.36 E-value=0.00038 Score=69.57 Aligned_cols=51 Identities=20% Similarity=0.246 Sum_probs=36.8
Q ss_pred hhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 364 PSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 364 ~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
++-.+.+..++.........-.|..+|+|.|+||||||++++.||..+|+|
T Consensus 110 ~~~~~~~~~~l~~~~~~~~~~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~ 160 (309)
T PRK08154 110 PAQLARVRDALSGMLGAGRRAARRRRIALIGLRGAGKSTLGRMLAARLGVP 160 (309)
T ss_pred HHHHHHHHHHHHHHHhhhhhccCCCEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 444444555554433332333567899999999999999999999999986
No 173
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.28 E-value=0.00032 Score=78.09 Aligned_cols=50 Identities=22% Similarity=0.232 Sum_probs=36.1
Q ss_pred cCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 354 ~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
...++.++|.+.....+..++... ...|+||+||||||||++++.||..+
T Consensus 182 ~g~~~~liGR~~ei~~~i~iL~r~--------~~~n~LLvGppGvGKT~lae~la~~i 231 (758)
T PRK11034 182 VGGIDPLIGREKELERAIQVLCRR--------RKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_pred cCCCCcCcCCCHHHHHHHHHHhcc--------CCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 446677888776666444433221 24599999999999999999999764
No 174
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.28 E-value=0.00017 Score=76.54 Aligned_cols=55 Identities=24% Similarity=0.310 Sum_probs=45.3
Q ss_pred ccCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 353 ~~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
.+..|+|++|+..+...|........ -...+||.||=|||||++||.+|..+++.
T Consensus 11 RP~~F~evvGQe~v~~~L~nal~~~r-------i~hAYlfsG~RGvGKTt~Ari~AkalNC~ 65 (515)
T COG2812 11 RPKTFDDVVGQEHVVKTLSNALENGR-------IAHAYLFSGPRGVGKTTIARILAKALNCE 65 (515)
T ss_pred CcccHHHhcccHHHHHHHHHHHHhCc-------chhhhhhcCCCCcCchhHHHHHHHHhcCC
Confidence 45689999999999888776654432 24589999999999999999999998864
No 175
>PLN02200 adenylate kinase family protein
Probab=97.25 E-value=0.00024 Score=68.33 Aligned_cols=28 Identities=21% Similarity=0.245 Sum_probs=25.4
Q ss_pred CccEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
+..|+++||||+|||++|+.|+..+|++
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~~~g~~ 70 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVETFGFK 70 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 4578899999999999999999999875
No 176
>PTZ00121 MAEBL; Provisional
Probab=97.20 E-value=0.089 Score=61.02 Aligned_cols=33 Identities=24% Similarity=0.482 Sum_probs=16.6
Q ss_pred HhhHhhHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Q 014938 178 KMQEESSIRKEQARRSTEE--QIQAQQRLTEKERA 210 (415)
Q Consensus 178 ~~qees~~rqE~~r~~~e~--~~~~~r~~~e~e~~ 210 (415)
++.++..+++|+++++.++ .+.++.+++++++.
T Consensus 1613 kk~ee~~kk~E~~kk~eeekKk~Eelkk~eeE~kk 1647 (2084)
T PTZ00121 1613 KKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKK 1647 (2084)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3444555555555555554 44445555544443
No 177
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.18 E-value=0.00074 Score=59.51 Aligned_cols=29 Identities=21% Similarity=0.135 Sum_probs=25.7
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
+...|+|.|+.|+|||+|++.|+..+|++
T Consensus 21 ~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 21 FGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 34568899999999999999999999975
No 178
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.17 E-value=0.00062 Score=70.63 Aligned_cols=24 Identities=29% Similarity=0.520 Sum_probs=22.0
Q ss_pred CccEEEecCCCCcHHHHHHHHHHH
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARK 410 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~ 410 (415)
..|+++.|||||||||++.+|+..
T Consensus 209 ~~Nli~lGp~GTGKThla~~l~~~ 232 (449)
T TIGR02688 209 NYNLIELGPKGTGKSYIYNNLSPY 232 (449)
T ss_pred CCcEEEECCCCCCHHHHHHHHhHH
Confidence 469999999999999999998876
No 179
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=97.15 E-value=0.00021 Score=75.93 Aligned_cols=46 Identities=35% Similarity=0.517 Sum_probs=36.1
Q ss_pred CCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHH
Q 014938 355 KNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARK 410 (415)
Q Consensus 355 ~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~ 410 (415)
.+|++|+|+..++..+...+ ....+++|+||||||||+++++|+..
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa----------~~g~~vlliG~pGsGKTtlar~l~~l 234 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAA----------AGGHNLLLFGPPGSGKTMLASRLQGI 234 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhc----------cCCCEEEEEecCCCCHHHHHHHHhcc
Confidence 48999999988766554322 12468999999999999999999863
No 180
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.13 E-value=0.0004 Score=75.39 Aligned_cols=62 Identities=26% Similarity=0.404 Sum_probs=43.8
Q ss_pred ccCCCccccCChhHHH-HHHHHHHHH---Hhh---h------------------hhcCCC-ccEEEecCCCCcHHHHHHH
Q 014938 353 AIKNNGDIILHPSLQR-RIQHLAKAT---ANT---K------------------IHQAPF-RNMLFYGPPGTGKTMVARE 406 (415)
Q Consensus 353 ~~~~~ddvv~~~~l~~-~l~~l~~~~---~~~---k------------------~~~~p~-r~vLl~GPPGTGKT~lAka 406 (415)
.+..|.|+.+.+.+.. .|.|+..|. +.. + ..+.|. +-+||+||||-|||+||..
T Consensus 266 ~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGKTTLAHV 345 (877)
T KOG1969|consen 266 RPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGKTTLAHV 345 (877)
T ss_pred ChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCChhHHHHH
Confidence 4557888888887777 667776652 110 0 012343 4466899999999999999
Q ss_pred HHHHhCCC
Q 014938 407 IARKSVWC 414 (415)
Q Consensus 407 LA~~lg~~ 414 (415)
+|++.|+.
T Consensus 346 iAkqaGYs 353 (877)
T KOG1969|consen 346 IAKQAGYS 353 (877)
T ss_pred HHHhcCce
Confidence 99999974
No 181
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=0.0012 Score=67.71 Aligned_cols=43 Identities=30% Similarity=0.410 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 369 RIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 369 ~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
.+..+.......-. +..+.|+++|||||||||..++-++.++.
T Consensus 25 ei~~l~~~l~~~~~-~~~p~n~~iyG~~GTGKT~~~~~v~~~l~ 67 (366)
T COG1474 25 EINQLASFLAPALR-GERPSNIIIYGPTGTGKTATVKFVMEELE 67 (366)
T ss_pred HHHHHHHHHHHHhc-CCCCccEEEECCCCCCHhHHHHHHHHHHH
Confidence 44444444332222 33456899999999999999999998764
No 182
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.07 E-value=0.0013 Score=63.45 Aligned_cols=25 Identities=28% Similarity=0.445 Sum_probs=22.3
Q ss_pred ccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 388 RNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 388 r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
..++|+||||+|||++++.++..+.
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 4688999999999999999998764
No 183
>PHA02624 large T antigen; Provisional
Probab=97.05 E-value=0.00068 Score=72.95 Aligned_cols=26 Identities=35% Similarity=0.432 Sum_probs=23.2
Q ss_pred CccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
.+.+|||||||||||+|+.+|...+|
T Consensus 431 k~~il~~GPpnTGKTtf~~sLl~~L~ 456 (647)
T PHA02624 431 RRYWLFKGPVNSGKTTLAAALLDLCG 456 (647)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 34688999999999999999999983
No 184
>PHA02774 E1; Provisional
Probab=97.00 E-value=0.00088 Score=71.81 Aligned_cols=28 Identities=32% Similarity=0.621 Sum_probs=24.3
Q ss_pred CCC-ccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 385 APF-RNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 385 ~p~-r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
.|. .+++||||||||||+||-+|.+.++
T Consensus 431 ~PKknciv~~GPP~TGKS~fa~sL~~~L~ 459 (613)
T PHA02774 431 IPKKNCLVIYGPPDTGKSMFCMSLIKFLK 459 (613)
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 453 5799999999999999999998875
No 185
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.99 E-value=0.00051 Score=70.77 Aligned_cols=28 Identities=39% Similarity=0.578 Sum_probs=26.3
Q ss_pred CccEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
..||||.||+|+|||+||+.||+.+++|
T Consensus 226 KSNvLllGPtGsGKTllaqTLAr~ldVP 253 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLLAQTLARVLDVP 253 (564)
T ss_pred cccEEEECCCCCchhHHHHHHHHHhCCC
Confidence 3599999999999999999999999988
No 186
>PF13245 AAA_19: Part of AAA domain
Probab=96.98 E-value=0.00072 Score=53.71 Aligned_cols=23 Identities=48% Similarity=0.696 Sum_probs=16.0
Q ss_pred cEEEecCCCCcHHH-HHHHHHHHh
Q 014938 389 NMLFYGPPGTGKTM-VAREIARKS 411 (415)
Q Consensus 389 ~vLl~GPPGTGKT~-lAkaLA~~l 411 (415)
-+++.||||||||+ ++..++...
T Consensus 12 ~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 12 LFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 45569999999994 555555443
No 187
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.98 E-value=0.00089 Score=70.80 Aligned_cols=58 Identities=16% Similarity=0.304 Sum_probs=36.7
Q ss_pred CCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhCC
Q 014938 355 KNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSVW 413 (415)
Q Consensus 355 ~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~ 413 (415)
...+++..+..-...|..+.... .....+.+.+-+||.||+|||||+..+.|+.++|+
T Consensus 79 ~t~eeLAVHkkKI~eVk~WL~~~-~~~~~~l~~~iLLltGPsGcGKSTtvkvLskelg~ 136 (634)
T KOG1970|consen 79 RTLEELAVHKKKISEVKQWLKQV-AEFTPKLGSRILLLTGPSGCGKSTTVKVLSKELGY 136 (634)
T ss_pred ccHHHHhhhHHhHHHHHHHHHHH-HHhccCCCceEEEEeCCCCCCchhHHHHHHHhhCc
Confidence 34555655544334343333311 11122344556788999999999999999999996
No 188
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=96.97 E-value=0.00089 Score=69.38 Aligned_cols=45 Identities=27% Similarity=0.368 Sum_probs=37.9
Q ss_pred cCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 354 ~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
..+++|.-+++.+.++|..- .++||+.||||.|||+||.+||..+
T Consensus 243 k~~ledY~L~dkl~eRL~er-------------aeGILIAG~PGaGKsTFaqAlAefy 287 (604)
T COG1855 243 KLSLEDYGLSDKLKERLEER-------------AEGILIAGAPGAGKSTFAQALAEFY 287 (604)
T ss_pred EechhhcCCCHHHHHHHHhh-------------hcceEEecCCCCChhHHHHHHHHHH
Confidence 45788888889988887632 3699999999999999999999765
No 189
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.84 E-value=0.0011 Score=51.36 Aligned_cols=22 Identities=32% Similarity=0.596 Sum_probs=20.2
Q ss_pred EEEecCCCCcHHHHHHHHHHHh
Q 014938 390 MLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 390 vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+.+.||||+|||++++.|+..+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999875
No 190
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=96.71 E-value=0.0027 Score=68.02 Aligned_cols=55 Identities=25% Similarity=0.332 Sum_probs=39.7
Q ss_pred cccCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 352 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 352 ~~~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
.....|++++|.......+...+.... ....+|||+|+||||||++|++|...+.
T Consensus 190 ~~~~~~~~liG~s~~~~~~~~~~~~~a------~~~~pvli~Ge~GtGK~~lA~~ih~~s~ 244 (534)
T TIGR01817 190 RRSGKEDGIIGKSPAMRQVVDQARVVA------RSNSTVLLRGESGTGKELIAKAIHYLSP 244 (534)
T ss_pred cccCccCceEECCHHHHHHHHHHHHHh------CcCCCEEEECCCCccHHHHHHHHHHhCC
Confidence 445688999998776664443333322 1245899999999999999999987754
No 191
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=96.60 E-value=0.0032 Score=70.41 Aligned_cols=24 Identities=29% Similarity=0.462 Sum_probs=20.6
Q ss_pred ccE-EEecCCCCcHHHHHHHHHHHh
Q 014938 388 RNM-LFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 388 r~v-Ll~GPPGTGKT~lAkaLA~~l 411 (415)
.++ ++|||||||||++++.+..++
T Consensus 781 nnvLYIyG~PGTGKTATVK~VLrEL 805 (1164)
T PTZ00112 781 NQILYISGMPGTGKTATVYSVIQLL 805 (1164)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 354 699999999999999998765
No 192
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.56 E-value=0.0026 Score=55.66 Aligned_cols=26 Identities=42% Similarity=0.643 Sum_probs=22.1
Q ss_pred CccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
..+|||+|+|||||+++|+.|....+
T Consensus 21 ~~pvli~GE~GtGK~~~A~~lh~~~~ 46 (138)
T PF14532_consen 21 SSPVLITGEPGTGKSLLARALHRYSG 46 (138)
T ss_dssp SS-EEEECCTTSSHHHHHHCCHHTTT
T ss_pred CCcEEEEcCCCCCHHHHHHHHHhhcC
Confidence 46899999999999999999987655
No 193
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.56 E-value=0.0042 Score=59.86 Aligned_cols=60 Identities=18% Similarity=0.277 Sum_probs=44.7
Q ss_pred CCccccCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 349 GPVEAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 349 ~~~~~~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
++..+...+.+++|-+..++.|-.-..... .+.|..||||||.-||||+++.|++-++.+
T Consensus 51 v~~~~~i~L~~l~Gvd~qk~~L~~NT~~F~----~G~pANnVLLwGaRGtGKSSLVKA~~~e~~ 110 (287)
T COG2607 51 VPDPDPIDLADLVGVDRQKEALVRNTEQFA----EGLPANNVLLWGARGTGKSSLVKALLNEYA 110 (287)
T ss_pred CCCCCCcCHHHHhCchHHHHHHHHHHHHHH----cCCcccceEEecCCCCChHHHHHHHHHHHH
Confidence 345566788899998888885543322221 256788999999999999999999977653
No 194
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=96.55 E-value=0.0032 Score=69.57 Aligned_cols=53 Identities=26% Similarity=0.306 Sum_probs=37.2
Q ss_pred cCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 354 ~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
...|++++|.......+..-+.... ....+|||+|+||||||++|++|...+.
T Consensus 372 n~~~~~liG~S~~~~~~~~~~~~~a------~~~~pVLI~GE~GTGK~~lA~~ih~~s~ 424 (686)
T PRK15429 372 DSEFGEIIGRSEAMYSVLKQVEMVA------QSDSTVLILGETGTGKELIARAIHNLSG 424 (686)
T ss_pred cccccceeecCHHHHHHHHHHHHHh------CCCCCEEEECCCCcCHHHHHHHHHHhcC
Confidence 3578889987766554433332221 1235899999999999999999987654
No 195
>PLN02199 shikimate kinase
Probab=96.53 E-value=0.0023 Score=63.56 Aligned_cols=28 Identities=29% Similarity=0.403 Sum_probs=26.4
Q ss_pred CccEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
.++|+|.|++|||||++++.||..+|++
T Consensus 102 ~~~I~LIG~~GSGKSTVgr~LA~~Lg~~ 129 (303)
T PLN02199 102 GRSMYLVGMMGSGKTTVGKLMSKVLGYT 129 (303)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 5799999999999999999999999986
No 196
>PRK10536 hypothetical protein; Provisional
Probab=96.50 E-value=0.0038 Score=60.97 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=21.0
Q ss_pred ccEEEecCCCCcHHHHHHHHHHH
Q 014938 388 RNMLFYGPPGTGKTMVAREIARK 410 (415)
Q Consensus 388 r~vLl~GPPGTGKT~lAkaLA~~ 410 (415)
..+++.||+|||||+||.++|.+
T Consensus 75 ~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 75 QLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 38899999999999999999985
No 197
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.45 E-value=0.006 Score=60.72 Aligned_cols=52 Identities=25% Similarity=0.360 Sum_probs=39.7
Q ss_pred cccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 359 DIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 359 dvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
.+|+.+.....+..+.......+... ..|+||+|++|+|||++++..+....
T Consensus 35 rWIgY~~A~~~L~~L~~Ll~~P~~~R--mp~lLivG~snnGKT~Ii~rF~~~hp 86 (302)
T PF05621_consen 35 RWIGYPRAKEALDRLEELLEYPKRHR--MPNLLIVGDSNNGKTMIIERFRRLHP 86 (302)
T ss_pred CeecCHHHHHHHHHHHHHHhCCcccC--CCceEEecCCCCcHHHHHHHHHHHCC
Confidence 37788888887777766655544443 34999999999999999999887543
No 198
>PRK13764 ATPase; Provisional
Probab=96.44 E-value=0.0032 Score=68.27 Aligned_cols=26 Identities=31% Similarity=0.523 Sum_probs=23.6
Q ss_pred CccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
..|||++||||+|||+++.+|+.++.
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i~ 282 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFYA 282 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 46899999999999999999998764
No 199
>PTZ00202 tuzin; Provisional
Probab=96.43 E-value=0.0083 Score=62.77 Aligned_cols=55 Identities=18% Similarity=0.215 Sum_probs=38.4
Q ss_pred cCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhCC
Q 014938 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSVW 413 (415)
Q Consensus 354 ~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~ 413 (415)
+.+..+++|-......|..++.... ...++-++|.||+|||||++++.+...++.
T Consensus 258 Pa~~~~FVGReaEla~Lr~VL~~~d-----~~~privvLtG~~G~GKTTLlR~~~~~l~~ 312 (550)
T PTZ00202 258 PAVIRQFVSREAEESWVRQVLRRLD-----TAHPRIVVFTGFRGCGKSSLCRSAVRKEGM 312 (550)
T ss_pred CCCccCCCCcHHHHHHHHHHHhccC-----CCCceEEEEECCCCCCHHHHHHHHHhcCCc
Confidence 3445568887776667766654322 122356779999999999999999877653
No 200
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.37 E-value=0.0053 Score=60.42 Aligned_cols=23 Identities=39% Similarity=0.619 Sum_probs=19.6
Q ss_pred CccEEEecCCCCcHHHHHHHHHH
Q 014938 387 FRNMLFYGPPGTGKTMVAREIAR 409 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~ 409 (415)
.+++||+||||||||++++.+=.
T Consensus 33 ~~pvLl~G~~GtGKT~li~~~l~ 55 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQNFLS 55 (272)
T ss_dssp TEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCcEEEECCCCCchhHHHHhhhc
Confidence 46999999999999999976543
No 201
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.37 E-value=0.0037 Score=64.15 Aligned_cols=25 Identities=28% Similarity=0.468 Sum_probs=22.0
Q ss_pred CccEEEecCCCCcHHHHHHHHHHHh
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
...++|+||||+|||+++..||..+
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4688999999999999999999753
No 202
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.35 E-value=0.0075 Score=57.42 Aligned_cols=28 Identities=25% Similarity=0.306 Sum_probs=23.2
Q ss_pred CCCccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 385 APFRNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 385 ~p~r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
.++.-+.|.||+|+|||+|++.|+..+.
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~ 58 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQ 58 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3445677899999999999999998765
No 203
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.34 E-value=0.0039 Score=61.53 Aligned_cols=25 Identities=28% Similarity=0.405 Sum_probs=22.1
Q ss_pred CccEEEecCCCCcHHHHHHHHHHHh
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
++.++|+||+|+|||+++..||..+
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~ 218 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARF 218 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4578899999999999999998765
No 204
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=96.31 E-value=0.0034 Score=54.61 Aligned_cols=28 Identities=32% Similarity=0.294 Sum_probs=23.6
Q ss_pred CccEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
..-|+|+|+=|.|||+|++.+++.+|++
T Consensus 15 g~vi~L~GdLGaGKTtf~r~l~~~lg~~ 42 (123)
T PF02367_consen 15 GDVILLSGDLGAGKTTFVRGLARALGID 42 (123)
T ss_dssp -EEEEEEESTTSSHHHHHHHHHHHTT--
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 4568899999999999999999999975
No 205
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=96.30 E-value=0.0039 Score=60.57 Aligned_cols=54 Identities=20% Similarity=0.260 Sum_probs=35.7
Q ss_pred ccCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 353 ~~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
...++++++..+.....+..+....- ....+||+.||+|+|||++.++|...+.
T Consensus 99 ~~~sle~l~~~~~~~~~~~~~l~~~v------~~~~~ili~G~tGSGKTT~l~all~~i~ 152 (270)
T PF00437_consen 99 KPFSLEDLGESGSIPEEIAEFLRSAV------RGRGNILISGPTGSGKTTLLNALLEEIP 152 (270)
T ss_dssp S--CHCCCCHTHHCHHHHHHHHHHCH------HTTEEEEEEESTTSSHHHHHHHHHHHCH
T ss_pred ccccHhhccCchhhHHHHHHHHhhcc------ccceEEEEECCCccccchHHHHHhhhcc
Confidence 34467777666555555544443321 1146999999999999999999987653
No 206
>smart00350 MCM minichromosome maintenance proteins.
Probab=96.21 E-value=0.0043 Score=66.26 Aligned_cols=23 Identities=30% Similarity=0.677 Sum_probs=21.6
Q ss_pred cEEEecCCCCcHHHHHHHHHHHh
Q 014938 389 NMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 389 ~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
||||+|+||||||++|+.++..+
T Consensus 238 ~vLL~G~pGtGKs~lar~l~~~~ 260 (509)
T smart00350 238 NILLLGDPGTAKSQLLKYVEKTA 260 (509)
T ss_pred eEEEeCCCChhHHHHHHHHHHHc
Confidence 79999999999999999999765
No 207
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=96.21 E-value=0.004 Score=62.06 Aligned_cols=27 Identities=26% Similarity=0.298 Sum_probs=24.8
Q ss_pred ccEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 388 RNMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 388 r~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
--||+.||||||||++|..||..+|++
T Consensus 93 ~iIlI~G~sgsGKStlA~~La~~l~~~ 119 (301)
T PRK04220 93 IIILIGGASGVGTSTIAFELASRLGIR 119 (301)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 468899999999999999999999876
No 208
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=96.19 E-value=0.007 Score=64.84 Aligned_cols=52 Identities=21% Similarity=0.212 Sum_probs=35.8
Q ss_pred ccCCCccccCChhHHH-HHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 353 AIKNNGDIILHPSLQR-RIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 353 ~~~~~ddvv~~~~l~~-~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
...+|++++|...... .+..+..... -...|||+|++||||+++|+++-..+
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~~~~A~-------~~~pvlI~GE~GtGK~~lA~aiH~~s 251 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQARKLAM-------LDAPLLITGDTGTGKDLLAYACHLRS 251 (520)
T ss_pred ccccccceeECCHHHHHHHHHHHHHhC-------CCCCEEEECCCCccHHHHHHHHHHhC
Confidence 4568999998776544 3333322211 13579999999999999999975443
No 209
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=96.19 E-value=0.0059 Score=66.95 Aligned_cols=24 Identities=46% Similarity=0.682 Sum_probs=20.2
Q ss_pred ccEEEecCCCCcHHHHHHHHHHHh
Q 014938 388 RNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 388 r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
..+|++||||||||+++..+..++
T Consensus 174 ~~~lI~GpPGTGKT~t~~~ii~~~ 197 (637)
T TIGR00376 174 DLFLIHGPPGTGKTRTLVELIRQL 197 (637)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHH
Confidence 478999999999999888877653
No 210
>PRK09862 putative ATP-dependent protease; Provisional
Probab=96.18 E-value=0.0024 Score=67.98 Aligned_cols=47 Identities=38% Similarity=0.506 Sum_probs=34.4
Q ss_pred CCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 355 KNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 355 ~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
.+|.+++++..++..+...+ ....+++|+||||||||++++.|+..+
T Consensus 188 ~d~~~v~Gq~~~~~al~laa----------~~G~~llliG~~GsGKTtLak~L~gll 234 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLEITA----------AGGHNLLLIGPPGTGKTMLASRINGLL 234 (506)
T ss_pred cCeEEEECcHHHHhhhheec----------cCCcEEEEECCCCCcHHHHHHHHhccC
Confidence 47888888776555442111 234689999999999999999998643
No 211
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.18 E-value=0.0043 Score=64.34 Aligned_cols=28 Identities=18% Similarity=0.259 Sum_probs=25.7
Q ss_pred CccEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
.++|+|.|++|||||+|+..|+..+|.+
T Consensus 219 ~~~IvI~G~~gsGKTTL~~~La~~~g~~ 246 (399)
T PRK08099 219 VRTVAILGGESSGKSTLVNKLANIFNTT 246 (399)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 5789999999999999999999998864
No 212
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.17 E-value=0.0041 Score=61.05 Aligned_cols=50 Identities=28% Similarity=0.510 Sum_probs=35.5
Q ss_pred cCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 354 ~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+..|+.++.+.+....+..+... .-+.|+|||||+|+||-+.+.||-+++
T Consensus 9 pksl~~l~~~~e~~~~Lksl~~~--------~d~PHll~yGPSGaGKKTrimclL~el 58 (351)
T KOG2035|consen 9 PKSLDELIYHEELANLLKSLSST--------GDFPHLLVYGPSGAGKKTRIMCLLREL 58 (351)
T ss_pred cchhhhcccHHHHHHHHHHhccc--------CCCCeEEEECCCCCCchhhHHHHHHHH
Confidence 34566677666666655544321 225699999999999999999987765
No 213
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.17 E-value=0.0059 Score=60.90 Aligned_cols=25 Identities=32% Similarity=0.515 Sum_probs=23.0
Q ss_pred CccEEEecCCCCcHHHHHHHHHHHh
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
..|+|+.||+|+|||+++++|...+
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i 156 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEI 156 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4699999999999999999999876
No 214
>PLN02165 adenylate isopentenyltransferase
Probab=96.16 E-value=0.005 Score=62.23 Aligned_cols=27 Identities=19% Similarity=0.384 Sum_probs=24.2
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
+...++|.||+|+|||+||..||..+|
T Consensus 42 ~g~iivIiGPTGSGKStLA~~LA~~l~ 68 (334)
T PLN02165 42 KDKVVVIMGATGSGKSRLSVDLATRFP 68 (334)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHcC
Confidence 345789999999999999999999987
No 215
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=96.12 E-value=0.0064 Score=62.28 Aligned_cols=29 Identities=28% Similarity=0.507 Sum_probs=24.0
Q ss_pred cCCCccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 384 QAPFRNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 384 ~~p~r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
..+++|+.||||+|||||||.-..-..+-
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp 87 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLP 87 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCC
Confidence 35689999999999999999877765543
No 216
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=96.12 E-value=0.0075 Score=64.83 Aligned_cols=50 Identities=24% Similarity=0.330 Sum_probs=36.7
Q ss_pred CCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHH
Q 014938 355 KNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARK 410 (415)
Q Consensus 355 ~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~ 410 (415)
..|++++|.......+...+.... ....+|||+|+|||||+++|++|-..
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~A------~s~~pVLI~GE~GTGKe~~A~~IH~~ 265 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLYA------RSSAAVLIQGETGTGKELAAQAIHRE 265 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHHh------CCCCcEEEECCCCCCHHHHHHHHHHh
Confidence 578899998776664444433222 12458999999999999999999776
No 217
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.06 E-value=0.0096 Score=63.03 Aligned_cols=30 Identities=43% Similarity=0.721 Sum_probs=28.0
Q ss_pred CCCccEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 385 APFRNMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 385 ~p~r~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
.|...+||+||||+|||.||-.+|..++.|
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FP 565 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALSSDFP 565 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhhcCCC
Confidence 568899999999999999999999999887
No 218
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.04 E-value=0.005 Score=66.99 Aligned_cols=28 Identities=29% Similarity=0.414 Sum_probs=25.1
Q ss_pred CccEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
..||||+||+|||||.|+++++.+...|
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~k~ 458 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYSKD 458 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhccc
Confidence 5699999999999999999999987654
No 219
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.01 E-value=0.0068 Score=63.55 Aligned_cols=26 Identities=31% Similarity=0.459 Sum_probs=23.2
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
++..|+|+||||+|||+++..||..+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L 119 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYF 119 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 46789999999999999999999765
No 220
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=96.00 E-value=0.01 Score=63.72 Aligned_cols=52 Identities=25% Similarity=0.322 Sum_probs=37.8
Q ss_pred cCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 354 ~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
...|++++|.......+...+.... ....+||++|+|||||+++|++|-..+
T Consensus 208 ~~~f~~iiG~S~~m~~~~~~i~~~A------~~~~pVLI~GE~GTGKe~lA~~IH~~S 259 (526)
T TIGR02329 208 RYRLDDLLGASAPMEQVRALVRLYA------RSDATVLILGESGTGKELVAQAIHQLS 259 (526)
T ss_pred ccchhheeeCCHHHHHHHHHHHHHh------CCCCcEEEECCCCcCHHHHHHHHHHhc
Confidence 4678999997766554444433222 124589999999999999999998665
No 221
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=95.97 E-value=0.0099 Score=60.79 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=22.6
Q ss_pred CccEEEecCCCCcHHHHHHHHHHHh
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
...||+.||+|+|||++.++|..++
T Consensus 134 ~glilI~GpTGSGKTTtL~aLl~~i 158 (358)
T TIGR02524 134 EGIVFITGATGSGKSTLLAAIIREL 158 (358)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 4578999999999999999999876
No 222
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=95.93 E-value=0.012 Score=64.46 Aligned_cols=51 Identities=22% Similarity=0.255 Sum_probs=35.3
Q ss_pred CCCccccCChhHHH-HHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 355 KNNGDIILHPSLQR-RIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 355 ~~~ddvv~~~~l~~-~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
..|++++|...... .+..+..... ...+|||+|+|||||+++|++|-..+.
T Consensus 322 ~~~~~l~g~s~~~~~~~~~~~~~a~-------~~~pvli~Ge~GtGK~~~A~~ih~~s~ 373 (638)
T PRK11388 322 HTFDHMPQDSPQMRRLIHFGRQAAK-------SSFPVLLCGEEGVGKALLAQAIHNESE 373 (638)
T ss_pred ccccceEECCHHHHHHHHHHHHHhC-------cCCCEEEECCCCcCHHHHHHHHHHhCC
Confidence 46888888665544 3333332221 235799999999999999999987654
No 223
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=95.89 E-value=0.007 Score=61.03 Aligned_cols=28 Identities=18% Similarity=0.241 Sum_probs=25.3
Q ss_pred CccEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
...|+|.|+||||||+|++.|+..+|.+
T Consensus 162 ~~~~~~~G~~~~gkstl~~~l~~~~~~~ 189 (325)
T TIGR01526 162 VKTVAILGGESTGKSTLVNKLAAVFNTT 189 (325)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCC
Confidence 4579999999999999999999998865
No 224
>PRK04132 replication factor C small subunit; Provisional
Probab=95.89 E-value=0.0047 Score=69.36 Aligned_cols=43 Identities=30% Similarity=0.631 Sum_probs=34.2
Q ss_pred ccCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHH
Q 014938 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMV 403 (415)
Q Consensus 353 ~~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~l 403 (415)
.+..|+|++|++.+...|...+.. ....|+||+||||+||++.
T Consensus 14 RP~~f~dIiGqe~i~~~Lk~~i~~--------~~i~h~l~~g~~g~~~cl~ 56 (846)
T PRK04132 14 RPQRLDDIVGQEHIVKRLKHYVKT--------GSMPHLLFAGPPGVGKCLT 56 (846)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc--------CCCCeEEEECCCCCCcccc
Confidence 356999999999999987766643 2345799999999999753
No 225
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.88 E-value=0.0062 Score=66.80 Aligned_cols=28 Identities=39% Similarity=0.610 Sum_probs=25.8
Q ss_pred CccEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
...+||+|+||||||++.+++|.++|++
T Consensus 431 ~~~vLLhG~~g~GK~t~V~~vas~lg~h 458 (953)
T KOG0736|consen 431 NPSVLLHGPPGSGKTTVVRAVASELGLH 458 (953)
T ss_pred ceEEEEeCCCCCChHHHHHHHHHHhCCc
Confidence 3579999999999999999999999985
No 226
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.85 E-value=0.01 Score=58.15 Aligned_cols=49 Identities=22% Similarity=0.287 Sum_probs=34.1
Q ss_pred CCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 355 KNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 355 ~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
.+|+++...+.....+..+... +...|||.||+|+|||++.+++...+.
T Consensus 57 ~~l~~lg~~~~~~~~l~~~~~~---------~~GlilisG~tGSGKTT~l~all~~i~ 105 (264)
T cd01129 57 LDLEKLGLKPENLEIFRKLLEK---------PHGIILVTGPTGSGKTTTLYSALSELN 105 (264)
T ss_pred CCHHHcCCCHHHHHHHHHHHhc---------CCCEEEEECCCCCcHHHHHHHHHhhhC
Confidence 3566666666655555444322 234689999999999999999876653
No 227
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=95.83 E-value=0.014 Score=62.26 Aligned_cols=51 Identities=29% Similarity=0.431 Sum_probs=36.2
Q ss_pred CCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 356 NNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 356 ~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
.++++||.......+...+.... ....+|||+|++|||||++|++|-..+.
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a------~~~~pVlI~Ge~GtGK~~~A~~ih~~s~ 235 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVA------ASDLNVLILGETGVGKELVARAIHAASP 235 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHh------CCCCcEEEECCCCccHHHHHHHHHHhCC
Confidence 57778887765554433333322 1245899999999999999999987654
No 228
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=95.81 E-value=0.0078 Score=63.24 Aligned_cols=29 Identities=24% Similarity=0.277 Sum_probs=26.0
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
.+.-|||+|+||||||++|..||..+|+.
T Consensus 254 ~p~vil~~G~~G~GKSt~a~~LA~~lg~~ 282 (475)
T PRK12337 254 RPLHVLIGGVSGVGKSVLASALAYRLGIT 282 (475)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcCCc
Confidence 35788899999999999999999999874
No 229
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=95.80 E-value=0.014 Score=57.86 Aligned_cols=51 Identities=24% Similarity=0.219 Sum_probs=33.2
Q ss_pred ccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 360 IILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 360 vv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+.|++-+++.|-..+...++...+..| --+=|||+|||||.++++.||+.+
T Consensus 84 lfGQHla~~~Vv~alk~~~~n~~p~KP-LvLSfHG~tGTGKN~Va~iiA~n~ 134 (344)
T KOG2170|consen 84 LFGQHLAKQLVVNALKSHWANPNPRKP-LVLSFHGWTGTGKNYVAEIIAENL 134 (344)
T ss_pred hhchHHHHHHHHHHHHHHhcCCCCCCC-eEEEecCCCCCchhHHHHHHHHHH
Confidence 567777777554444444433222222 123389999999999999999764
No 230
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.78 E-value=0.0079 Score=58.61 Aligned_cols=24 Identities=21% Similarity=0.397 Sum_probs=19.8
Q ss_pred CccEEEecCCCCcHHHHHHHHHHH
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARK 410 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~ 410 (415)
..-+|++||||||||+||-.++..
T Consensus 36 gs~~lI~G~pGtGKT~l~~qf~~~ 59 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMVEQFAVT 59 (259)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 445778999999999999887654
No 231
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.76 E-value=0.013 Score=57.72 Aligned_cols=26 Identities=35% Similarity=0.446 Sum_probs=22.4
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+++-++|+||||+|||+++..||..+
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l 96 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKL 96 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 45678899999999999999998765
No 232
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=95.71 E-value=0.0076 Score=61.28 Aligned_cols=27 Identities=30% Similarity=0.501 Sum_probs=23.9
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
...|||+.||+|+|||++.++|...+.
T Consensus 161 ~~~nilI~G~tGSGKTTll~aLl~~i~ 187 (344)
T PRK13851 161 GRLTMLLCGPTGSGKTTMSKTLISAIP 187 (344)
T ss_pred cCCeEEEECCCCccHHHHHHHHHcccC
Confidence 357999999999999999999997754
No 233
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.70 E-value=0.61 Score=51.39 Aligned_cols=17 Identities=12% Similarity=0.155 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 014938 101 KQEQTRLAELDVEKVHY 117 (415)
Q Consensus 101 ~qe~t~q~e~~~~~~e~ 117 (415)
.||..|+.-|..-.+|+
T Consensus 313 TFEDKrkeNy~kGqaEL 329 (1118)
T KOG1029|consen 313 TFEDKRKENYEKGQAEL 329 (1118)
T ss_pred chhhhhHHhHhhhhHHH
Confidence 34444444433333333
No 234
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=95.69 E-value=0.015 Score=59.10 Aligned_cols=26 Identities=23% Similarity=0.313 Sum_probs=22.8
Q ss_pred CccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
...+|+.||+|+|||++.++|...+.
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~ 147 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYIN 147 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 45889999999999999999988764
No 235
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=95.65 E-value=0.015 Score=58.71 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=22.8
Q ss_pred CccEEEecCCCCcHHHHHHHHHHHh
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
..|+|+.||+|+|||++.++|...+
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~~i 168 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAEI 168 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4699999999999999999999875
No 236
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=95.63 E-value=0.024 Score=57.59 Aligned_cols=53 Identities=19% Similarity=0.174 Sum_probs=33.2
Q ss_pred CCc-cccCChhHHHHHHHHHHHHHhhhhhcCC-CccEEEecCCCCcHHHHHHHHHHHh
Q 014938 356 NNG-DIILHPSLQRRIQHLAKATANTKIHQAP-FRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 356 ~~d-dvv~~~~l~~~l~~l~~~~~~~k~~~~p-~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
.|+ ++.|.++...++ .........+... .+-++|.||+|+|||+|+.+|.+-+
T Consensus 58 ~f~~~~~G~~~~i~~l---V~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~l 112 (358)
T PF08298_consen 58 FFEDEFYGMEETIERL---VNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGL 112 (358)
T ss_pred CccccccCcHHHHHHH---HHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHh
Confidence 344 566656555533 3333332233333 4556789999999999999998654
No 237
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=95.61 E-value=0.0094 Score=57.31 Aligned_cols=26 Identities=46% Similarity=0.709 Sum_probs=22.9
Q ss_pred CccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
.-|.|+.||||||||++.+-||+.+.
T Consensus 137 ~lntLiigpP~~GKTTlLRdiaR~~s 162 (308)
T COG3854 137 WLNTLIIGPPQVGKTTLLRDIARLLS 162 (308)
T ss_pred ceeeEEecCCCCChHHHHHHHHHHhh
Confidence 45899999999999999999998664
No 238
>PRK10646 ADP-binding protein; Provisional
Probab=95.60 E-value=0.027 Score=50.81 Aligned_cols=28 Identities=25% Similarity=0.329 Sum_probs=25.0
Q ss_pred CccEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
..-|+|.|+=|+|||+|++.|++.+|++
T Consensus 28 g~vi~L~GdLGaGKTtf~rgl~~~Lg~~ 55 (153)
T PRK10646 28 ATVIYLYGDLGAGKTTFSRGFLQALGHQ 55 (153)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 3457899999999999999999999974
No 239
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=95.59 E-value=0.019 Score=55.25 Aligned_cols=27 Identities=33% Similarity=0.418 Sum_probs=23.1
Q ss_pred ccEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 388 RNMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 388 r~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
.+..++||+|||||...+.||..+|.+
T Consensus 33 ~~~~~~GpagtGKtetik~La~~lG~~ 59 (231)
T PF12774_consen 33 LGGALSGPAGTGKTETIKDLARALGRF 59 (231)
T ss_dssp TEEEEESSTTSSHHHHHHHHHHCTT--
T ss_pred CCCCCcCCCCCCchhHHHHHHHHhCCe
Confidence 466789999999999999999999864
No 240
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.57 E-value=0.011 Score=58.91 Aligned_cols=25 Identities=24% Similarity=0.368 Sum_probs=20.8
Q ss_pred ccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 388 RNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 388 r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
.-+++|||||||||+||-.+|...-
T Consensus 96 ~i~ei~G~~g~GKT~l~~~~~~~~~ 120 (310)
T TIGR02236 96 AITEVFGEFGSGKTQICHQLAVNVQ 120 (310)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3456999999999999999987643
No 241
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=95.56 E-value=0.011 Score=50.27 Aligned_cols=22 Identities=36% Similarity=0.456 Sum_probs=19.7
Q ss_pred CccEEEecCCCCcHHHHHHHHH
Q 014938 387 FRNMLFYGPPGTGKTMVAREIA 408 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA 408 (415)
...++|.||+|+|||+|++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 4578999999999999999876
No 242
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=95.54 E-value=0.011 Score=63.15 Aligned_cols=28 Identities=32% Similarity=0.455 Sum_probs=24.9
Q ss_pred CccEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
+..|.+.||+|||||++|+.||..+|+.
T Consensus 284 ~~ii~i~G~sgsGKst~a~~la~~l~~~ 311 (512)
T PRK13477 284 QPIIAIDGPAGAGKSTVTRAVAKKLGLL 311 (512)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCe
Confidence 3478899999999999999999999874
No 243
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.50 E-value=0.022 Score=58.99 Aligned_cols=25 Identities=28% Similarity=0.517 Sum_probs=22.3
Q ss_pred CccEEEecCCCCcHHHHHHHHHHHh
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
++.|+|.||+|+|||+++..||..+
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L 265 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQF 265 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHH
Confidence 4689999999999999999999765
No 244
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.50 E-value=0.0097 Score=58.54 Aligned_cols=26 Identities=38% Similarity=0.563 Sum_probs=23.4
Q ss_pred CccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
+.|++|+||||+|||+|.+.|+..+.
T Consensus 111 ~~~~~i~g~~g~GKttl~~~l~~~~~ 136 (270)
T TIGR02858 111 VLNTLIISPPQCGKTTLLRDLARILS 136 (270)
T ss_pred eeEEEEEcCCCCCHHHHHHHHhCccC
Confidence 46999999999999999999997764
No 245
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=95.49 E-value=0.012 Score=59.37 Aligned_cols=25 Identities=36% Similarity=0.596 Sum_probs=22.7
Q ss_pred CccEEEecCCCCcHHHHHHHHHHHh
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
..|+|+.||||+|||++.++|+.+.
T Consensus 148 ~~~ilI~G~tGSGKTTll~aL~~~~ 172 (319)
T PRK13894 148 HRNILVIGGTGSGKTTLVNAIINEM 172 (319)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhh
Confidence 4699999999999999999999764
No 246
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=95.48 E-value=0.018 Score=58.34 Aligned_cols=26 Identities=27% Similarity=0.368 Sum_probs=23.3
Q ss_pred CccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
..|||+.||+|+|||++.++|..++.
T Consensus 160 ~~nili~G~tgSGKTTll~aL~~~ip 185 (332)
T PRK13900 160 KKNIIISGGTSTGKTTFTNAALREIP 185 (332)
T ss_pred CCcEEEECCCCCCHHHHHHHHHhhCC
Confidence 57999999999999999999987653
No 247
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.36 E-value=0.013 Score=60.53 Aligned_cols=26 Identities=31% Similarity=0.439 Sum_probs=22.7
Q ss_pred CccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
+..|+|+||+|+|||+++..||..+.
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~ 199 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYG 199 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999997653
No 248
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.35 E-value=0.014 Score=58.67 Aligned_cols=26 Identities=31% Similarity=0.314 Sum_probs=22.5
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
++.-++|.||||+|||+++..||..+
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKY 138 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 34678899999999999999999765
No 249
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=95.35 E-value=0.017 Score=59.85 Aligned_cols=52 Identities=21% Similarity=0.181 Sum_probs=35.4
Q ss_pred cccCCCccccCChhHHH-HHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHH
Q 014938 352 EAIKNNGDIILHPSLQR-RIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARK 410 (415)
Q Consensus 352 ~~~~~~ddvv~~~~l~~-~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~ 410 (415)
.....++++||...--. .++.+... -.-..+||++|++||||+++|.+|-..
T Consensus 72 ~~~~~~~~LIG~~~~~~~~~eqik~~-------ap~~~~vLi~GetGtGKel~A~~iH~~ 124 (403)
T COG1221 72 LKSEALDDLIGESPSLQELREQIKAY-------APSGLPVLIIGETGTGKELFARLIHAL 124 (403)
T ss_pred ccchhhhhhhccCHHHHHHHHHHHhh-------CCCCCcEEEecCCCccHHHHHHHHHHh
Confidence 34556777887554433 44444431 112468999999999999999999744
No 250
>PF00519 PPV_E1_C: Papillomavirus helicase; InterPro: IPR001177 Papillomaviruses are a large family of DNA tumour viruses which give rise to warts in their host species. The helicase E1 protein is an ATP-dependent DNA helicase required for initiation of viral DNA replication []. It forms a complex with the viral E2 protein, which is a site-specific DNA-binding transcriptional activator. The E1-E2 complex binds to the replication origin which contains binding sites for both proteins []. The E1 protein is a 70 kDa polypeptide with a central DNA-binding domain and a C-terminal ATPase/helicase domain. It binds specific 18 bp DNA sequences at the origin of replication, melts the DNA duplex and functions as a 3' to 5' helicase []. In addition to E2 it also interacts with DNA polymerase alpha and replication protein A to effect DNA replication. The DNA-binding domain forms a five-stranded antiparallel beta sheet bordered by four loosely packed alpha helices on one side and two tightly packed helices on the other []. Two structural modules within this domain, an extended loop and a helix, contain conserved residues and are critical for DNA binding. In solution E1 is a monomer, but binds DNA as a dimer. Recruitment of more E1 subunits to the complex leads to melting of the origin and ultimately to the formation of an E1 hexamer with helicase activity []. The entry represents the C-terminal region of E1, containing both the DNA-binding and ATPase/helical domains.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1TUE_K 1R9W_A 2V9P_B 2GXA_I 1KSX_J 1KSY_A 1F08_B.
Probab=95.31 E-value=0.032 Score=57.37 Aligned_cols=29 Identities=34% Similarity=0.679 Sum_probs=23.7
Q ss_pred cCCCcc-EEEecCCCCcHHHHHHHHHHHhC
Q 014938 384 QAPFRN-MLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 384 ~~p~r~-vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
+.|.+| ++|||||+||||+|+-.|-+.++
T Consensus 258 g~PKKnClvi~GPPdTGKS~F~~SLi~Fl~ 287 (432)
T PF00519_consen 258 GIPKKNCLVIYGPPDTGKSMFCMSLIKFLK 287 (432)
T ss_dssp TBTTSSEEEEESSCCCSHHHHHHHHHHHHT
T ss_pred CCCcccEEEEECCCCCchhHHHHHHHHHhC
Confidence 456666 55899999999999999887765
No 251
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.29 E-value=0.014 Score=60.91 Aligned_cols=25 Identities=28% Similarity=0.405 Sum_probs=21.6
Q ss_pred CccEEEecCCCCcHHHHHHHHHHHh
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
.+.++|+||+|+|||+++..||..+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~ 245 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARY 245 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3588999999999999999988654
No 252
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=95.27 E-value=0.025 Score=58.18 Aligned_cols=25 Identities=28% Similarity=0.355 Sum_probs=22.2
Q ss_pred ccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 388 RNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 388 r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
.++|+.||+|+|||++..+|..++.
T Consensus 150 GlilI~G~TGSGKTT~l~al~~~i~ 174 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASIYQHCG 174 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4789999999999999999988763
No 253
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=95.25 E-value=0.022 Score=66.64 Aligned_cols=52 Identities=19% Similarity=0.282 Sum_probs=37.0
Q ss_pred cCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 354 ~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
..+++++||.+...+.+..++.. .....+-|-++||+|+|||++|++|++.+
T Consensus 180 ~~~~~~~vG~~~~l~~l~~lL~l------~~~~~~vvgI~G~gGiGKTTLA~~l~~~l 231 (1153)
T PLN03210 180 SNDFEDFVGIEDHIAKMSSLLHL------ESEEVRMVGIWGSSGIGKTTIARALFSRL 231 (1153)
T ss_pred CcccccccchHHHHHHHHHHHcc------ccCceEEEEEEcCCCCchHHHHHHHHHHH
Confidence 34677888877666655544422 12235678899999999999999998765
No 254
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.24 E-value=0.024 Score=60.16 Aligned_cols=24 Identities=29% Similarity=0.559 Sum_probs=21.1
Q ss_pred ccEEEecCCCCcHHHHHHHHHHHh
Q 014938 388 RNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 388 r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
.-++|+||+|+|||+++..||..+
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~~~ 280 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAARC 280 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHHHH
Confidence 468899999999999999999765
No 255
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=95.23 E-value=0.036 Score=53.86 Aligned_cols=29 Identities=34% Similarity=0.378 Sum_probs=25.7
Q ss_pred CccEEEecCCCCcHHHHHHHHHHHhCCCC
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARKSVWCS 415 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~lg~~~ 415 (415)
+.-||+-|+||+|||++|.-||..+|+++
T Consensus 89 p~IILIGGasGVGkStIA~ElA~rLgI~~ 117 (299)
T COG2074 89 PLIILIGGASGVGKSTIAGELARRLGIRS 117 (299)
T ss_pred CeEEEecCCCCCChhHHHHHHHHHcCCce
Confidence 45677789999999999999999999875
No 256
>PRK05973 replicative DNA helicase; Provisional
Probab=95.22 E-value=0.017 Score=55.71 Aligned_cols=25 Identities=36% Similarity=0.526 Sum_probs=20.3
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHH
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARK 410 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~ 410 (415)
|..-+|+.|+||+|||+|+--++..
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~ 87 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVE 87 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHH
Confidence 3446788999999999999887754
No 257
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.19 E-value=2.4 Score=46.99 Aligned_cols=15 Identities=40% Similarity=0.561 Sum_probs=7.3
Q ss_pred HHHHhhhHHHHHHHH
Q 014938 147 RAQGLRNEDELARKR 161 (415)
Q Consensus 147 ~~~~a~y~D~L~rkr 161 (415)
.+++.+.+.+|+|.|
T Consensus 367 rk~qlElekqLerQR 381 (1118)
T KOG1029|consen 367 RKAQLELEKQLERQR 381 (1118)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444555555544
No 258
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.14 E-value=0.018 Score=58.09 Aligned_cols=24 Identities=33% Similarity=0.472 Sum_probs=19.5
Q ss_pred CccEEEecCCCCcHHHHHHHHHHH
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARK 410 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~ 410 (415)
.+-+++|||||||||+||-.++..
T Consensus 55 G~iteI~G~~GsGKTtLaL~~~~~ 78 (321)
T TIGR02012 55 GRIIEIYGPESSGKTTLALHAIAE 78 (321)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 345779999999999998876654
No 259
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.10 E-value=0.016 Score=59.03 Aligned_cols=24 Identities=21% Similarity=0.235 Sum_probs=19.7
Q ss_pred cEEEecCCCCcHHHHHHHHHHHhC
Q 014938 389 NMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 389 ~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
-..||||||||||.||..+|-...
T Consensus 128 ItEI~G~~GsGKTql~lqlav~~q 151 (344)
T PLN03187 128 ITEAFGEFRSGKTQLAHTLCVTTQ 151 (344)
T ss_pred EEEEecCCCCChhHHHHHHHHHHh
Confidence 355999999999999998875543
No 260
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=95.08 E-value=0.039 Score=50.87 Aligned_cols=25 Identities=12% Similarity=0.234 Sum_probs=21.7
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHH
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARK 410 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~ 410 (415)
+...|++.|+||+|||+|...+...
T Consensus 40 ~~~~I~iiG~~g~GKStLl~~l~~~ 64 (204)
T cd01878 40 GIPTVALVGYTNAGKSTLFNALTGA 64 (204)
T ss_pred CCCeEEEECCCCCCHHHHHHHHhcc
Confidence 3468999999999999999998864
No 261
>PRK12608 transcription termination factor Rho; Provisional
Probab=95.06 E-value=0.02 Score=58.82 Aligned_cols=25 Identities=32% Similarity=0.460 Sum_probs=22.3
Q ss_pred CccEEEecCCCCcHHHHHHHHHHHh
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
...+|++||||||||++++.|++.+
T Consensus 133 GQR~LIvG~pGtGKTTLl~~la~~i 157 (380)
T PRK12608 133 GQRGLIVAPPRAGKTVLLQQIAAAV 157 (380)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 3578999999999999999998866
No 262
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.06 E-value=0.018 Score=52.51 Aligned_cols=25 Identities=40% Similarity=0.558 Sum_probs=21.9
Q ss_pred CccEEEecCCCCcHHHHHHHHHHHh
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
..-++|+||||+|||+++..|+..+
T Consensus 32 g~l~~i~g~~g~GKT~~~~~l~~~~ 56 (193)
T PF13481_consen 32 GELTLIAGPPGSGKTTLALQLAAAL 56 (193)
T ss_dssp TSEEEEEECSTSSHHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 4589999999999999999988754
No 263
>PRK05439 pantothenate kinase; Provisional
Probab=95.04 E-value=0.045 Score=54.94 Aligned_cols=25 Identities=20% Similarity=0.114 Sum_probs=21.3
Q ss_pred ccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 388 RNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 388 r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
--|.+.||||+|||++|+.|+..++
T Consensus 87 ~iIgIaG~~gsGKSTla~~L~~~l~ 111 (311)
T PRK05439 87 FIIGIAGSVAVGKSTTARLLQALLS 111 (311)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3466889999999999999998664
No 264
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=95.02 E-value=0.017 Score=59.71 Aligned_cols=26 Identities=31% Similarity=0.438 Sum_probs=22.5
Q ss_pred CccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
....|++||||||||+|++.|++...
T Consensus 169 GQR~lIvgppGvGKTTLaK~Ian~I~ 194 (416)
T PRK09376 169 GQRGLIVAPPKAGKTVLLQNIANSIT 194 (416)
T ss_pred CceEEEeCCCCCChhHHHHHHHHHHH
Confidence 45689999999999999999998653
No 265
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=95.00 E-value=0.017 Score=57.74 Aligned_cols=26 Identities=23% Similarity=0.473 Sum_probs=23.1
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
...++++.||+|+|||++.++|...+
T Consensus 143 ~~~~ili~G~tGsGKTTll~al~~~~ 168 (308)
T TIGR02788 143 SRKNIIISGGTGSGKTTFLKSLVDEI 168 (308)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHccC
Confidence 35799999999999999999998765
No 266
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=94.98 E-value=0.021 Score=61.21 Aligned_cols=28 Identities=21% Similarity=0.472 Sum_probs=24.3
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHhCC
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKSVW 413 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~lg~ 413 (415)
++.-|||+|+||+||||+|+.++...|+
T Consensus 368 ~p~LVil~G~pGSGKST~A~~l~~~~g~ 395 (526)
T TIGR01663 368 PCEMVIAVGFPGAGKSHFCKKFFQPAGY 395 (526)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 4567889999999999999999987664
No 267
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=94.96 E-value=0.021 Score=57.24 Aligned_cols=24 Identities=33% Similarity=0.542 Sum_probs=20.3
Q ss_pred ccEEEecCCCCcHHHHHHHHHHHh
Q 014938 388 RNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 388 r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
.-++++||||||||.||-.+|...
T Consensus 103 ~vtei~G~~GsGKT~l~~~~~~~~ 126 (317)
T PRK04301 103 SITEFYGEFGSGKTQICHQLAVNV 126 (317)
T ss_pred cEEEEECCCCCCHhHHHHHHHHHh
Confidence 346689999999999999998654
No 268
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=94.95 E-value=0.022 Score=53.90 Aligned_cols=26 Identities=27% Similarity=0.354 Sum_probs=22.6
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+...+.|.||+|+|||+|.+.|+...
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 57 (225)
T PRK10247 32 AGEFKLITGPSGCGKSTLLKIVASLI 57 (225)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 45678899999999999999999754
No 269
>PRK14974 cell division protein FtsY; Provisional
Probab=94.94 E-value=0.022 Score=57.75 Aligned_cols=25 Identities=32% Similarity=0.347 Sum_probs=21.4
Q ss_pred CccEEEecCCCCcHHHHHHHHHHHh
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+.-|+|.||||+|||+++..||..+
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l 164 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYL 164 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4578899999999999888888654
No 270
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=94.88 E-value=0.032 Score=59.33 Aligned_cols=50 Identities=24% Similarity=0.360 Sum_probs=35.6
Q ss_pred cCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 354 ~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
..+|+++.+.++....+..++.. +..-||+.||+|+|||++..++-.++.
T Consensus 218 ~~~l~~Lg~~~~~~~~l~~~~~~---------~~GlilitGptGSGKTTtL~a~L~~l~ 267 (486)
T TIGR02533 218 RLDLETLGMSPELLSRFERLIRR---------PHGIILVTGPTGSGKTTTLYAALSRLN 267 (486)
T ss_pred CCCHHHcCCCHHHHHHHHHHHhc---------CCCEEEEEcCCCCCHHHHHHHHHhccC
Confidence 45777777777766666655432 223478999999999999998766554
No 271
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=94.85 E-value=0.03 Score=60.69 Aligned_cols=27 Identities=26% Similarity=0.373 Sum_probs=24.2
Q ss_pred CccEEEecCCCCcHHHHHHHHHHHhCC
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARKSVW 413 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~lg~ 413 (415)
+..|+|+|+||||||++|+.|+..++.
T Consensus 392 g~~Ivl~Gl~GSGKSTia~~La~~L~~ 418 (568)
T PRK05537 392 GFTVFFTGLSGAGKSTIAKALMVKLME 418 (568)
T ss_pred CeEEEEECCCCChHHHHHHHHHHHhhh
Confidence 347889999999999999999999875
No 272
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=94.83 E-value=0.025 Score=57.12 Aligned_cols=23 Identities=35% Similarity=0.567 Sum_probs=19.3
Q ss_pred ccEEEecCCCCcHHHHHHHHHHH
Q 014938 388 RNMLFYGPPGTGKTMVAREIARK 410 (415)
Q Consensus 388 r~vLl~GPPGTGKT~lAkaLA~~ 410 (415)
+-+++|||||||||+||-.++..
T Consensus 56 ~iteI~Gp~GsGKTtLal~~~~~ 78 (325)
T cd00983 56 RIIEIYGPESSGKTTLALHAIAE 78 (325)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 35679999999999999987754
No 273
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.83 E-value=0.024 Score=58.44 Aligned_cols=26 Identities=23% Similarity=0.341 Sum_probs=22.7
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+.+.++|+||+|||||+++..||..+
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l 230 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQL 230 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45688999999999999999999754
No 274
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=94.83 E-value=0.022 Score=50.27 Aligned_cols=26 Identities=27% Similarity=0.374 Sum_probs=22.5
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+...+.+.||+|+|||+|.++|+...
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 45678899999999999999998654
No 275
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=94.82 E-value=0.026 Score=56.17 Aligned_cols=27 Identities=19% Similarity=0.352 Sum_probs=23.1
Q ss_pred CCCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 385 APFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 385 ~p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
.+...|.|.||||+|||+|+..|+..+
T Consensus 32 ~~~~~i~i~G~~G~GKttl~~~l~~~~ 58 (300)
T TIGR00750 32 GNAHRVGITGTPGAGKSTLLEALGMEL 58 (300)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 345688899999999999999998765
No 276
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=94.80 E-value=0.023 Score=53.72 Aligned_cols=27 Identities=26% Similarity=0.372 Sum_probs=23.5
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
+...+.|.||+|+|||+|.+.|+..+.
T Consensus 32 ~Ge~~~l~G~nGsGKSTLlk~l~G~~~ 58 (226)
T cd03234 32 SGQVMAILGSSGSGKTTLLDAISGRVE 58 (226)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCccC
Confidence 556889999999999999999997653
No 277
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.64 E-value=0.029 Score=58.64 Aligned_cols=26 Identities=27% Similarity=0.397 Sum_probs=22.5
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
++.-|+|+||||+|||+++..||..+
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l 124 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYY 124 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35668899999999999999999765
No 278
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=94.61 E-value=0.027 Score=52.15 Aligned_cols=26 Identities=27% Similarity=0.500 Sum_probs=23.0
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+...+.|.||+|+|||+|.+.|+...
T Consensus 34 ~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 34 PGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999999754
No 279
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=94.60 E-value=0.016 Score=62.01 Aligned_cols=20 Identities=50% Similarity=0.783 Sum_probs=15.7
Q ss_pred ccEEEecCCCCcHHHHHHHH
Q 014938 388 RNMLFYGPPGTGKTMVAREI 407 (415)
Q Consensus 388 r~vLl~GPPGTGKT~lAkaL 407 (415)
.-++++||||||||+...-|
T Consensus 202 ~l~~I~GPPGTGKT~TlvEi 221 (649)
T KOG1803|consen 202 DLLIIHGPPGTGKTRTLVEI 221 (649)
T ss_pred CceEeeCCCCCCceeeHHHH
Confidence 35789999999999855443
No 280
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=94.59 E-value=0.03 Score=52.89 Aligned_cols=26 Identities=19% Similarity=0.291 Sum_probs=22.9
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+...+.|.||+|+|||+|.+.|+...
T Consensus 35 ~Ge~~~i~G~nGsGKSTLl~~i~Gl~ 60 (228)
T PRK10584 35 RGETIALIGESGSGKSTLLAILAGLD 60 (228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 45688999999999999999999654
No 281
>PRK10867 signal recognition particle protein; Provisional
Probab=94.57 E-value=0.031 Score=58.63 Aligned_cols=26 Identities=31% Similarity=0.469 Sum_probs=21.9
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
++.-|+|+||||+|||+++..||..+
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l 124 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYL 124 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 45678899999999999888888754
No 282
>PTZ00035 Rad51 protein; Provisional
Probab=94.55 E-value=0.033 Score=56.52 Aligned_cols=26 Identities=19% Similarity=0.231 Sum_probs=21.1
Q ss_pred ccEEEecCCCCcHHHHHHHHHHHhCC
Q 014938 388 RNMLFYGPPGTGKTMVAREIARKSVW 413 (415)
Q Consensus 388 r~vLl~GPPGTGKT~lAkaLA~~lg~ 413 (415)
.-+.++||||||||+|+..++....+
T Consensus 119 ~iteI~G~~GsGKT~l~~~l~~~~ql 144 (337)
T PTZ00035 119 SITELFGEFRTGKTQLCHTLCVTCQL 144 (337)
T ss_pred eEEEEECCCCCchhHHHHHHHHHhcc
Confidence 34569999999999999999865543
No 283
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.52 E-value=0.027 Score=53.61 Aligned_cols=25 Identities=28% Similarity=0.456 Sum_probs=20.5
Q ss_pred cEEEecCCCCcHHHHHHHHHHHhCC
Q 014938 389 NMLFYGPPGTGKTMVAREIARKSVW 413 (415)
Q Consensus 389 ~vLl~GPPGTGKT~lAkaLA~~lg~ 413 (415)
-.-|.||+|||||+|.+++-+...+
T Consensus 35 VTAlIGPSGcGKST~LR~lNRmndl 59 (253)
T COG1117 35 VTALIGPSGCGKSTLLRCLNRMNDL 59 (253)
T ss_pred eEEEECCCCcCHHHHHHHHHhhccc
Confidence 4458999999999999999766543
No 284
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=94.48 E-value=0.031 Score=53.07 Aligned_cols=26 Identities=19% Similarity=0.268 Sum_probs=22.4
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+..-+.|.||+|+|||+|.+.|+..+
T Consensus 34 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 59 (233)
T PRK11629 34 EGEMMAIVGSSGSGKSTLLHLLGGLD 59 (233)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 44578899999999999999999654
No 285
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=94.47 E-value=0.026 Score=54.97 Aligned_cols=29 Identities=24% Similarity=0.367 Sum_probs=22.7
Q ss_pred CCccEE-EecCCCCcHHHHHHHHHHHhCCC
Q 014938 386 PFRNML-FYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 386 p~r~vL-l~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
+...|. ||||||||||.||-.||-...+|
T Consensus 36 ~~g~itEi~G~~gsGKTql~l~l~~~~~l~ 65 (256)
T PF08423_consen 36 PTGSITEIVGESGSGKTQLCLQLAVNVQLP 65 (256)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTTSG
T ss_pred CCCcEEEEEEecccccchHHHHHHHHhhcc
Confidence 344555 99999999999999998765543
No 286
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=94.47 E-value=0.03 Score=56.22 Aligned_cols=24 Identities=17% Similarity=0.235 Sum_probs=19.5
Q ss_pred ccEEEecCCCCcHHHHHHHHHHHh
Q 014938 388 RNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 388 r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
.-+++|||||||||.||..+|-..
T Consensus 97 ~iteI~G~~GsGKTql~lqla~~~ 120 (313)
T TIGR02238 97 SITEVFGEFRCGKTQLSHTLCVTA 120 (313)
T ss_pred eEEEEECCCCCCcCHHHHHHHHHH
Confidence 345699999999999998887543
No 287
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=94.46 E-value=0.03 Score=55.70 Aligned_cols=54 Identities=20% Similarity=0.207 Sum_probs=37.8
Q ss_pred ccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 358 GDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 358 ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
+..||+-...+...-+..... .+....+-+|+-||||||||-+|..+++.+|-+
T Consensus 40 ~GmVGQ~~AR~Aagvi~kmi~---egkiaGraiLiaG~pgtGKtAiAmg~sksLG~~ 93 (454)
T KOG2680|consen 40 EGMVGQVKARKAAGVILKMIR---EGKIAGRAILIAGQPGTGKTAIAMGMSKSLGDD 93 (454)
T ss_pred ccchhhHHHHHHhHHHHHHHH---cCcccceEEEEecCCCCCceeeeeehhhhhCCC
Confidence 345666555554444443332 233346889999999999999999999999864
No 288
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.45 E-value=0.033 Score=49.50 Aligned_cols=27 Identities=30% Similarity=0.383 Sum_probs=23.0
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
+...+.|.||+|+|||+|.++|+..+.
T Consensus 24 ~g~~~~i~G~nGsGKStll~~l~g~~~ 50 (157)
T cd00267 24 AGEIVALVGPNGSGKSTLLRAIAGLLK 50 (157)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 446888999999999999999997543
No 289
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=94.45 E-value=0.03 Score=57.09 Aligned_cols=27 Identities=33% Similarity=0.395 Sum_probs=22.8
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
+...+.|.||+|||||+|.++|+....
T Consensus 31 ~Ge~~~llGpsGsGKSTLLr~IaGl~~ 57 (351)
T PRK11432 31 QGTMVTLLGPSGCGKTTVLRLVAGLEK 57 (351)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHCCCC
Confidence 345788999999999999999996543
No 290
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=94.44 E-value=0.038 Score=57.16 Aligned_cols=49 Identities=22% Similarity=0.209 Sum_probs=35.9
Q ss_pred CCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 355 KNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 355 ~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
..|.-++|++.++..|..-+ - +....++|+-|+.|||||+++++|+..|
T Consensus 14 ~pf~aivGqd~lk~aL~l~a---v-----~P~iggvLI~G~kGtaKSt~~Rala~LL 62 (423)
T COG1239 14 LPFTAIVGQDPLKLALGLNA---V-----DPQIGGALIAGEKGTAKSTLARALADLL 62 (423)
T ss_pred cchhhhcCchHHHHHHhhhh---c-----ccccceeEEecCCCccHHHHHHHHHHhC
Confidence 34566889888887553211 1 1125699999999999999999999765
No 291
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=94.41 E-value=0.061 Score=58.29 Aligned_cols=49 Identities=18% Similarity=0.216 Sum_probs=35.2
Q ss_pred CCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 355 KNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 355 ~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
.+|+++.+.+.....+..++.. +...||+.||+|+|||++..++-.+++
T Consensus 293 ~~l~~lg~~~~~~~~l~~~~~~---------~~Glilv~G~tGSGKTTtl~a~l~~~~ 341 (564)
T TIGR02538 293 LDIDKLGFEPDQKALFLEAIHK---------PQGMVLVTGPTGSGKTVSLYTALNILN 341 (564)
T ss_pred CCHHHcCCCHHHHHHHHHHHHh---------cCCeEEEECCCCCCHHHHHHHHHHhhC
Confidence 4677777777666666555432 234688999999999999887776664
No 292
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=94.40 E-value=0.029 Score=54.45 Aligned_cols=26 Identities=19% Similarity=0.327 Sum_probs=22.6
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+...+.|.||+|+|||+|.++|+...
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 61 (265)
T PRK10575 36 AGKVTGLIGHNGSGKSTLLKMLGRHQ 61 (265)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 45678899999999999999999654
No 293
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=94.39 E-value=0.033 Score=54.15 Aligned_cols=26 Identities=23% Similarity=0.266 Sum_probs=22.6
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+...+.|.||+|+|||+|.+.|+..+
T Consensus 37 ~Ge~~~I~G~NGsGKSTLlk~l~Gl~ 62 (257)
T PRK11247 37 AGQFVAVVGRSGCGKSTLLRLLAGLE 62 (257)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45678899999999999999999654
No 294
>PLN02348 phosphoribulokinase
Probab=94.38 E-value=0.049 Score=56.25 Aligned_cols=24 Identities=17% Similarity=0.177 Sum_probs=21.4
Q ss_pred cEEEecCCCCcHHHHHHHHHHHhC
Q 014938 389 NMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 389 ~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
-|-+.||||||||+||+.|+..+|
T Consensus 51 IIGIaG~SGSGKSTfA~~L~~~Lg 74 (395)
T PLN02348 51 VIGLAADSGCGKSTFMRRLTSVFG 74 (395)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 444789999999999999999986
No 295
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.35 E-value=0.034 Score=52.20 Aligned_cols=26 Identities=31% Similarity=0.356 Sum_probs=22.5
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+...+.|.||+|+|||+|.+.|+...
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 61 (214)
T PRK13543 36 AGEALLVQGDNGAGKTTLLRVLAGLL 61 (214)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 45678899999999999999999653
No 296
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=94.34 E-value=0.036 Score=52.20 Aligned_cols=26 Identities=19% Similarity=0.374 Sum_probs=22.7
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+...+.|.||+|+|||+|.++|+..+
T Consensus 33 ~Ge~~~l~G~nGsGKSTLl~~i~G~~ 58 (224)
T TIGR02324 33 AGECVALSGPSGAGKSTLLKSLYANY 58 (224)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45688899999999999999999654
No 297
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=94.34 E-value=0.033 Score=55.38 Aligned_cols=24 Identities=21% Similarity=0.196 Sum_probs=20.0
Q ss_pred cEEEecCCCCcHHHHHHHHHHHhC
Q 014938 389 NMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 389 ~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
-|-+.||+|+|||++|+.|...+.
T Consensus 64 IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 64 IISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 455889999999999999877653
No 298
>PRK11823 DNA repair protein RadA; Provisional
Probab=94.31 E-value=0.045 Score=57.61 Aligned_cols=26 Identities=31% Similarity=0.493 Sum_probs=21.8
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+..-+||+||||+|||+|+..++...
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~ 104 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARL 104 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 34567899999999999999998654
No 299
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.31 E-value=0.036 Score=51.21 Aligned_cols=25 Identities=28% Similarity=0.400 Sum_probs=22.1
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHH
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARK 410 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~ 410 (415)
+...+.|.||+|+|||+|.+.|+..
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 32 PGTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4567889999999999999999974
No 300
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=94.29 E-value=0.03 Score=59.89 Aligned_cols=24 Identities=38% Similarity=0.573 Sum_probs=21.9
Q ss_pred CccEEEecCCCCcHHHHHHHHHHH
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARK 410 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~ 410 (415)
..|+|++||+|||||+|-+.||..
T Consensus 461 g~~LLItG~sG~GKtSLlRvlggL 484 (659)
T KOG0060|consen 461 GQNLLITGPSGCGKTSLLRVLGGL 484 (659)
T ss_pred CCeEEEECCCCCchhHHHHHHhcc
Confidence 579999999999999999999954
No 301
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.29 E-value=0.04 Score=53.25 Aligned_cols=26 Identities=19% Similarity=0.303 Sum_probs=22.9
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+...+.|.||+|+|||+|.+.|+..+
T Consensus 37 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 62 (259)
T PRK14274 37 ENEVTAIIGPSGCGKSTFIKTLNLMI 62 (259)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 45678899999999999999999765
No 302
>PRK10436 hypothetical protein; Provisional
Probab=94.29 E-value=0.07 Score=56.45 Aligned_cols=50 Identities=18% Similarity=0.267 Sum_probs=35.6
Q ss_pred cCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 354 ~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
..+|+++.+.+.....+..++.. |...||+.||+|+|||++..++-.+++
T Consensus 194 ~~~L~~LG~~~~~~~~l~~~~~~---------~~GliLvtGpTGSGKTTtL~a~l~~~~ 243 (462)
T PRK10436 194 ALDLETLGMTPAQLAQFRQALQQ---------PQGLILVTGPTGSGKTVTLYSALQTLN 243 (462)
T ss_pred CCCHHHcCcCHHHHHHHHHHHHh---------cCCeEEEECCCCCChHHHHHHHHHhhC
Confidence 34677777777766666655432 334688999999999998877766654
No 303
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=94.28 E-value=0.033 Score=56.02 Aligned_cols=24 Identities=25% Similarity=0.220 Sum_probs=20.2
Q ss_pred CccEEEecCCCCcHHHHHHHHHHH
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARK 410 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~ 410 (415)
..-+++|||||+|||+||..++..
T Consensus 96 g~i~~i~G~~g~GKT~l~~~~~~~ 119 (316)
T TIGR02239 96 GSITEIFGEFRTGKTQLCHTLAVT 119 (316)
T ss_pred CeEEEEECCCCCCcCHHHHHHHHH
Confidence 445669999999999999998864
No 304
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=94.28 E-value=0.032 Score=60.41 Aligned_cols=26 Identities=35% Similarity=0.519 Sum_probs=23.4
Q ss_pred CCCccEEEecCCCCcHHHHHHHHHHH
Q 014938 385 APFRNMLFYGPPGTGKTMVAREIARK 410 (415)
Q Consensus 385 ~p~r~vLl~GPPGTGKT~lAkaLA~~ 410 (415)
.|...+|+-||+|||||+|-|+||.-
T Consensus 417 ~~G~~llI~G~SG~GKTsLlRaiaGL 442 (604)
T COG4178 417 RPGERLLITGESGAGKTSLLRALAGL 442 (604)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 56788999999999999999999953
No 305
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.26 E-value=0.038 Score=57.60 Aligned_cols=24 Identities=38% Similarity=0.678 Sum_probs=20.8
Q ss_pred ccEEEecCCCCcHHHHHHHHHHHh
Q 014938 388 RNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 388 r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
.-++|.||+|+|||+++..||...
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 457899999999999999999754
No 306
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=94.25 E-value=0.036 Score=53.47 Aligned_cols=26 Identities=23% Similarity=0.386 Sum_probs=23.1
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+...+.|.||+|+|||+|++.|+..+
T Consensus 31 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (258)
T PRK11701 31 PGEVLGIVGESGSGKTTLLNALSARL 56 (258)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 56689999999999999999999754
No 307
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=94.25 E-value=1.4 Score=48.55 Aligned_cols=17 Identities=24% Similarity=0.265 Sum_probs=7.3
Q ss_pred HHHHhhhHHHHHhhhhh
Q 014938 222 MAEAEGRAHEAKLTEDH 238 (415)
Q Consensus 222 ~ae~~~r~~~~r~n~dl 238 (415)
+.|++-+.+.+++..|.
T Consensus 994 eee~k~q~~~Eqer~D~ 1010 (1259)
T KOG0163|consen 994 EEEAKRQNQLEQERRDH 1010 (1259)
T ss_pred HHHHHHHhHHHHHHHHH
Confidence 33344444444444443
No 308
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=94.23 E-value=0.043 Score=51.74 Aligned_cols=26 Identities=27% Similarity=0.400 Sum_probs=22.8
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+...+.|.||+|+|||+|.++|+..+
T Consensus 39 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 64 (226)
T cd03248 39 PGEVTALVGPSGSGKSTVVALLENFY 64 (226)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 45678999999999999999999764
No 309
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.20 E-value=0.042 Score=58.88 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=21.6
Q ss_pred CccEEEecCCCCcHHHHHHHHHHHh
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
...|+|+||+|+|||+++..||..+
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~l 374 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRF 374 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 4588899999999999999998653
No 310
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=94.19 E-value=0.041 Score=52.86 Aligned_cols=27 Identities=26% Similarity=0.388 Sum_probs=23.4
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
+...+.|.||+|+|||+|.+.|+...+
T Consensus 31 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 57 (253)
T PRK14242 31 QNQVTALIGPSGCGKSTFLRCLNRMND 57 (253)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 456789999999999999999997653
No 311
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.15 E-value=0.037 Score=53.20 Aligned_cols=27 Identities=30% Similarity=0.421 Sum_probs=23.3
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
+...+.|.||+|+|||+|.+.|+...+
T Consensus 31 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 57 (253)
T PRK14261 31 KNRVTALIGPSGCGKSTLLRCFNRMND 57 (253)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcccc
Confidence 456789999999999999999997543
No 312
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=94.15 E-value=0.057 Score=41.35 Aligned_cols=21 Identities=33% Similarity=0.577 Sum_probs=18.5
Q ss_pred cEEEecCCCCcHHHHHHHHHH
Q 014938 389 NMLFYGPPGTGKTMVAREIAR 409 (415)
Q Consensus 389 ~vLl~GPPGTGKT~lAkaLA~ 409 (415)
..+|+||+|+|||++.-++.-
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999888764
No 313
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=94.13 E-value=0.042 Score=56.94 Aligned_cols=28 Identities=29% Similarity=0.418 Sum_probs=24.0
Q ss_pred CCCccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 385 APFRNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 385 ~p~r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
.+...++++||||||||++++.|++.+.
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred CCCCEEEEECCCCCChhHHHHHHHHhhc
Confidence 4456799999999999999999998753
No 314
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=94.12 E-value=0.039 Score=53.86 Aligned_cols=26 Identities=15% Similarity=0.142 Sum_probs=22.6
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+...+.|.||+|+|||+|.+.|+...
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 57 (272)
T PRK15056 32 GGSIAALVGVNGSGKSTLFKALMGFV 57 (272)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45678899999999999999999654
No 315
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.11 E-value=0.076 Score=55.46 Aligned_cols=25 Identities=28% Similarity=0.450 Sum_probs=21.6
Q ss_pred CccEEEecCCCCcHHHHHHHHHHHh
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
..-+.|.||+|+|||++...||..+
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~ 215 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARA 215 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4578899999999999999998753
No 316
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.09 E-value=0.04 Score=54.27 Aligned_cols=26 Identities=15% Similarity=0.174 Sum_probs=22.6
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+...+.|.||+|+|||+|.++|+..+
T Consensus 36 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 61 (289)
T PRK13645 36 KNKVTCVIGTTGSGKSTMIQLTNGLI 61 (289)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45678899999999999999999654
No 317
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.08 E-value=0.042 Score=53.50 Aligned_cols=26 Identities=19% Similarity=0.218 Sum_probs=22.5
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+...+.|.||+|+|||+|.+.|+..+
T Consensus 34 ~Ge~~~I~G~nGsGKSTLl~~i~Gl~ 59 (269)
T PRK13648 34 KGQWTSIVGHNGSGKSTIAKLMIGIE 59 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45678899999999999999999654
No 318
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=94.07 E-value=0.041 Score=53.53 Aligned_cols=26 Identities=23% Similarity=0.362 Sum_probs=22.6
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+...+.|.||+|+|||+|.+.|+..+
T Consensus 38 ~Ge~~~i~G~NGsGKSTLl~~l~Gl~ 63 (267)
T PRK15112 38 EGQTLAIIGENGSGKSTLAKMLAGMI 63 (267)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 45678899999999999999999754
No 319
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=94.06 E-value=0.039 Score=52.25 Aligned_cols=27 Identities=22% Similarity=0.245 Sum_probs=22.9
Q ss_pred CCCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 385 APFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 385 ~p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
.+...+.|.||+|+|||+|.++|+...
T Consensus 46 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 72 (224)
T cd03220 46 PRGERIGLIGRNGAGKSTLLRLLAGIY 72 (224)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345678899999999999999999653
No 320
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=94.05 E-value=0.046 Score=57.26 Aligned_cols=26 Identities=31% Similarity=0.414 Sum_probs=22.1
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
++.-++|.||||+|||+++..||..+
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l 123 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYL 123 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 35678899999999999998888764
No 321
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=94.04 E-value=0.063 Score=60.66 Aligned_cols=23 Identities=35% Similarity=0.475 Sum_probs=21.2
Q ss_pred cEEEecCCCCcHHHHHHHHHHHh
Q 014938 389 NMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 389 ~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
||||+|+||||||.+|+.+...+
T Consensus 494 hVLLvGDPGTGKSqLAr~Ih~ls 516 (915)
T PTZ00111 494 NVLLCGDPGTAKSQLLHYTHLLS 516 (915)
T ss_pred eEEEeCCCCccHHHHHHHHHHhC
Confidence 89999999999999999998753
No 322
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=94.03 E-value=0.041 Score=53.72 Aligned_cols=27 Identities=19% Similarity=0.156 Sum_probs=23.1
Q ss_pred CCCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 385 APFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 385 ~p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
.|...+.|.||+|+|||+|.++|+..+
T Consensus 48 ~~Ge~~~liG~NGsGKSTLlk~L~Gl~ 74 (264)
T PRK13546 48 YEGDVIGLVGINGSGKSTLSNIIGGSL 74 (264)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 355678899999999999999999654
No 323
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=94.03 E-value=0.042 Score=53.57 Aligned_cols=26 Identities=23% Similarity=0.354 Sum_probs=22.7
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+...+.|.||+|+|||+|.+.|+...
T Consensus 37 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 62 (268)
T PRK10419 37 SGETVALLGRSGCGKSTLARLLVGLE 62 (268)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999999653
No 324
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.03 E-value=0.041 Score=51.26 Aligned_cols=26 Identities=27% Similarity=0.583 Sum_probs=22.6
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+...+.+.||+|+|||+|.+.|+...
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 57 (202)
T cd03233 32 PGEMVLVLGRPGSGCSTLLKALANRT 57 (202)
T ss_pred CCcEEEEECCCCCCHHHHHHHhcccC
Confidence 45678899999999999999999754
No 325
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=94.00 E-value=0.054 Score=55.73 Aligned_cols=26 Identities=31% Similarity=0.505 Sum_probs=21.5
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+..-+|++||||+|||+|+..++..+
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~ 106 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARL 106 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 34567899999999999999888653
No 326
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=94.00 E-value=0.052 Score=50.49 Aligned_cols=26 Identities=19% Similarity=0.215 Sum_probs=22.5
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+...+.+.||+|+|||+|.++|+...
T Consensus 33 ~G~~~~i~G~nGsGKSTLl~~l~Gl~ 58 (207)
T cd03369 33 AGEKIGIVGRTGAGKSTLILALFRFL 58 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 45678899999999999999999654
No 327
>PF01057 Parvo_NS1: Parvovirus non-structural protein NS1; InterPro: IPR001257 Parvoviruses are some of the smallest viruses containing linear, non-segmented single-stranded DNA genomes, with an average genome size of 5000 nucleotides. Parvoviruses have been described that infect a wide range of invertebrates and vertebrates and are well known for causing enteric disease in mammals. Genomes contains two large ORFs: NS1 and VP1; other ORFs are found in some sub-types and different gene products can arise from splice variants and the use of different start codons []. This entry represents the helicase domain of the Parvovirus NS1 protein; which is required for viral DNA replication []. This domain contains the ATP/GTP-binding site motif A (P-loop). Parvoviral NS1 also regulates host gene expression through histone acetylation []. ; GO: 0019079 viral genome replication; PDB: 3P0S_A 1S9H_A 1U0J_A.
Probab=93.98 E-value=0.031 Score=55.05 Aligned_cols=27 Identities=41% Similarity=0.599 Sum_probs=21.8
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
+...|+|||||+||||.|+.+|+..+.
T Consensus 112 krNti~~~Gp~~tGKt~la~aI~~~~~ 138 (271)
T PF01057_consen 112 KRNTIWFYGPASTGKTNLADAIANAVP 138 (271)
T ss_dssp T--EEEEESTTTSSHCHCHHCCCHHSC
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHhCC
Confidence 345688999999999999999987653
No 328
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.98 E-value=0.047 Score=53.25 Aligned_cols=26 Identities=15% Similarity=0.264 Sum_probs=22.6
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+...+.|.||+|+|||+|.+.|+..+
T Consensus 34 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 59 (271)
T PRK13632 34 EGEYVAILGHNGSGKSTISKILTGLL 59 (271)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45678899999999999999999764
No 329
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=93.97 E-value=0.12 Score=46.31 Aligned_cols=29 Identities=31% Similarity=0.271 Sum_probs=25.2
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
+..-|+|.|+=|.|||+|++.|++.+|.+
T Consensus 24 ~g~Vv~L~GdLGAGKTtf~rgi~~~Lg~~ 52 (149)
T COG0802 24 AGDVVLLSGDLGAGKTTLVRGIAKGLGVD 52 (149)
T ss_pred CCCEEEEEcCCcCChHHHHHHHHHHcCCC
Confidence 34567899999999999999999999964
No 330
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=93.96 E-value=0.044 Score=53.25 Aligned_cols=26 Identities=23% Similarity=0.285 Sum_probs=22.8
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+...+.|.||+|+|||+|.++|+..+
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 61 (265)
T TIGR02769 36 EGETVGLLGRSGCGKSTLARLLLGLE 61 (265)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45688899999999999999999754
No 331
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=93.94 E-value=0.054 Score=55.03 Aligned_cols=26 Identities=23% Similarity=0.287 Sum_probs=22.9
Q ss_pred CccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
..|+++.||+|+|||++.++|+..+.
T Consensus 178 ~~~ili~G~tGsGKTTll~al~~~i~ 203 (340)
T TIGR03819 178 RLAFLISGGTGSGKTTLLSALLALVA 203 (340)
T ss_pred CCeEEEECCCCCCHHHHHHHHHccCC
Confidence 46999999999999999999987653
No 332
>PRK06851 hypothetical protein; Provisional
Probab=93.94 E-value=0.044 Score=56.20 Aligned_cols=25 Identities=32% Similarity=0.616 Sum_probs=22.3
Q ss_pred CccEEEecCCCCcHHHHHHHHHHHh
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
.+-++|-||||||||++.+.++..+
T Consensus 214 ~~~~~i~G~pG~GKstl~~~i~~~a 238 (367)
T PRK06851 214 KNRYFLKGRPGTGKSTMLKKIAKAA 238 (367)
T ss_pred ceEEEEeCCCCCcHHHHHHHHHHHH
Confidence 3578999999999999999999876
No 333
>PRK09354 recA recombinase A; Provisional
Probab=93.94 E-value=0.052 Score=55.34 Aligned_cols=23 Identities=35% Similarity=0.554 Sum_probs=18.8
Q ss_pred ccEEEecCCCCcHHHHHHHHHHH
Q 014938 388 RNMLFYGPPGTGKTMVAREIARK 410 (415)
Q Consensus 388 r~vLl~GPPGTGKT~lAkaLA~~ 410 (415)
+-+++|||||||||+||-.++..
T Consensus 61 ~IteI~G~~GsGKTtLal~~~~~ 83 (349)
T PRK09354 61 RIVEIYGPESSGKTTLALHAIAE 83 (349)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 45669999999999999877643
No 334
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=93.93 E-value=0.039 Score=56.09 Aligned_cols=25 Identities=24% Similarity=0.223 Sum_probs=20.2
Q ss_pred CccEEEecCCCCcHHHHHHHHHHHh
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
..-+++|||||||||.||..+|...
T Consensus 123 g~i~~i~G~~g~GKT~l~~~l~~~~ 147 (342)
T PLN03186 123 GSITEIYGEFRTGKTQLCHTLCVTC 147 (342)
T ss_pred ceEEEEECCCCCCccHHHHHHHHHh
Confidence 3446699999999999999888543
No 335
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=93.90 E-value=0.048 Score=53.07 Aligned_cols=27 Identities=26% Similarity=0.475 Sum_probs=23.4
Q ss_pred CCCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 385 APFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 385 ~p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
.+...+.|.||+|+|||+|.++|+...
T Consensus 44 ~~Ge~~~I~G~nGsGKSTLl~~l~Gl~ 70 (267)
T PRK14237 44 EKNKITALIGPSGSGKSTYLRSLNRMN 70 (267)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 345678899999999999999999765
No 336
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=93.89 E-value=0.043 Score=53.29 Aligned_cols=26 Identities=27% Similarity=0.392 Sum_probs=22.7
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+...+.|+||+|+|||+|.++|+...
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 57 (265)
T PRK10253 32 DGHFTAIIGPNGCGKSTLLRTLSRLM 57 (265)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 45678899999999999999999654
No 337
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=93.85 E-value=0.054 Score=52.72 Aligned_cols=28 Identities=29% Similarity=0.411 Sum_probs=23.9
Q ss_pred CCCccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 385 APFRNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 385 ~p~r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
.|...+.|.||+|+|||+|.+.|+....
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 70 (267)
T PRK14235 43 PEKTVTAFIGPSGCGKSTFLRCLNRMND 70 (267)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 3556788999999999999999998653
No 338
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.84 E-value=0.05 Score=53.07 Aligned_cols=27 Identities=26% Similarity=0.320 Sum_probs=22.9
Q ss_pred CCCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 385 APFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 385 ~p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
.+...+.|.||+|+|||+|.++|+..+
T Consensus 48 ~~Ge~~~l~G~nGsGKSTLl~~L~Gl~ 74 (269)
T cd03294 48 REGEIFVIMGLSGSGKSTLLRCINRLI 74 (269)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345678899999999999999999654
No 339
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=93.83 E-value=0.047 Score=53.17 Aligned_cols=26 Identities=31% Similarity=0.396 Sum_probs=22.5
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+...+.|.||+|+|||+|.+.|+...
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 57 (269)
T PRK11831 32 RGKITAIMGPSGIGKTTLLRLIGGQI 57 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44578899999999999999999654
No 340
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.81 E-value=0.048 Score=52.48 Aligned_cols=26 Identities=27% Similarity=0.442 Sum_probs=22.8
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+...+.|.||+|+|||+|.++|+..+
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 57 (254)
T PRK14273 32 KNSITALIGPSGCGKSTFLRTLNRMN 57 (254)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 45678899999999999999999754
No 341
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.80 E-value=0.053 Score=52.69 Aligned_cols=26 Identities=31% Similarity=0.502 Sum_probs=22.6
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+...+.|.||+|+|||+|.++|+...
T Consensus 46 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 71 (268)
T PRK14248 46 KHAVTALIGPSGCGKSTFLRSINRMN 71 (268)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 45678899999999999999999754
No 342
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=93.79 E-value=0.047 Score=56.23 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=22.1
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+..-+.|.||+|||||+|.++||...
T Consensus 44 ~Ge~~~llGpsGsGKSTLLr~IaGl~ 69 (377)
T PRK11607 44 KGEIFALLGASGCGKSTLLRMLAGFE 69 (377)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 44578899999999999999999543
No 343
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=93.79 E-value=0.051 Score=61.52 Aligned_cols=26 Identities=31% Similarity=0.415 Sum_probs=23.8
Q ss_pred cEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 389 NMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 389 ~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
.|.+-||||||||++|+.||..+|+.
T Consensus 36 ~i~idG~~gsGKst~~~~la~~l~~~ 61 (863)
T PRK12269 36 IIALDGPAGSGKSSVCRLLASRLGAQ 61 (863)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 67788999999999999999999874
No 344
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=93.77 E-value=0.053 Score=50.36 Aligned_cols=23 Identities=26% Similarity=0.511 Sum_probs=18.7
Q ss_pred cEEEecCCCCcHHHHHHHHHHHh
Q 014938 389 NMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 389 ~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
|+|++|+||+|||.+.+.|...+
T Consensus 40 h~li~G~tgsGKS~~l~~ll~~l 62 (205)
T PF01580_consen 40 HLLIAGATGSGKSTLLRTLLLSL 62 (205)
T ss_dssp SEEEE--TTSSHHHHHHHHHHHH
T ss_pred eEEEEcCCCCCccHHHHHHHHHH
Confidence 99999999999999999887654
No 345
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=93.73 E-value=0.048 Score=56.12 Aligned_cols=26 Identities=38% Similarity=0.431 Sum_probs=22.2
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+..-+.|.||+|||||+|.++||...
T Consensus 39 ~Ge~~~LlGpsGsGKSTLLr~IaGl~ 64 (375)
T PRK09452 39 NGEFLTLLGPSGCGKTTVLRLIAGFE 64 (375)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34578899999999999999999654
No 346
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=93.68 E-value=0.061 Score=52.24 Aligned_cols=27 Identities=30% Similarity=0.443 Sum_probs=23.3
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
+...+.|.||+|+|||+|.+.|+...+
T Consensus 35 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 61 (264)
T PRK14243 35 KNQITAFIGPSGCGKSTILRCFNRLND 61 (264)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhhc
Confidence 456788999999999999999997644
No 347
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=93.66 E-value=0.052 Score=51.77 Aligned_cols=27 Identities=26% Similarity=0.310 Sum_probs=22.8
Q ss_pred CCCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 385 APFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 385 ~p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
.+...+.|.||+|+|||+|.+.|+..+
T Consensus 45 ~~Ge~~~i~G~NGsGKSTLl~~i~Gl~ 71 (236)
T cd03267 45 EKGEIVGFIGPNGAGKTTTLKILSGLL 71 (236)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 345678899999999999999999653
No 348
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.66 E-value=0.059 Score=52.08 Aligned_cols=27 Identities=26% Similarity=0.417 Sum_probs=23.6
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
+...+.|.||+|+|||+|.+.|+..+.
T Consensus 32 ~Ge~~~l~G~nGsGKSTLlk~l~Gl~~ 58 (259)
T PRK14260 32 RNKVTAIIGPSGCGKSTFIKTLNRISE 58 (259)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 456899999999999999999998643
No 349
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=93.65 E-value=0.052 Score=52.48 Aligned_cols=26 Identities=31% Similarity=0.498 Sum_probs=22.7
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+...+.|.||+|+|||+|.+.|+..+
T Consensus 38 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 63 (260)
T PRK10744 38 KNQVTAFIGPSGCGKSTLLRTFNRMY 63 (260)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 45678899999999999999999764
No 350
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=93.58 E-value=0.062 Score=52.44 Aligned_cols=27 Identities=22% Similarity=0.362 Sum_probs=23.3
Q ss_pred CCCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 385 APFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 385 ~p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
.+..-+.|.||+|+|||+|.+.|+..+
T Consensus 48 ~~Ge~~~I~G~nGsGKSTLl~~i~Gl~ 74 (271)
T PRK14238 48 HENEVTAIIGPSGCGKSTYIKTLNRMV 74 (271)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 345678899999999999999999765
No 351
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.57 E-value=0.059 Score=52.88 Aligned_cols=27 Identities=22% Similarity=0.198 Sum_probs=23.2
Q ss_pred CCCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 385 APFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 385 ~p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
.+...+.|.||+|+|||+|.+.|+..+
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 57 (279)
T PRK13650 31 KQGEWLSIIGHNGSGKSTTVRLIDGLL 57 (279)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345688999999999999999999654
No 352
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.57 E-value=0.054 Score=53.01 Aligned_cols=26 Identities=19% Similarity=0.280 Sum_probs=22.0
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+...+.|.||+|+|||+|.+.|+..+
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~i~Gl~ 57 (280)
T PRK13649 32 DGSYTAFIGHTGSGKSTIMQLLNGLH 57 (280)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34567899999999999999999654
No 353
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=93.52 E-value=0.057 Score=51.76 Aligned_cols=25 Identities=28% Similarity=0.426 Sum_probs=22.4
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHH
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARK 410 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~ 410 (415)
+...+.|.||+|+|||+|.+.|+..
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~i~Gl 56 (252)
T CHL00131 32 KGEIHAIMGPNGSGKSTLSKVIAGH 56 (252)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcCC
Confidence 4567889999999999999999985
No 354
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=93.50 E-value=0.063 Score=52.36 Aligned_cols=27 Identities=33% Similarity=0.522 Sum_probs=23.3
Q ss_pred CCCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 385 APFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 385 ~p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
.+...+.+.||+|+|||+|.++|+...
T Consensus 49 ~~Ge~~~I~G~nGsGKSTLl~~laGl~ 75 (272)
T PRK14236 49 PKNRVTAFIGPSGCGKSTLLRCFNRMN 75 (272)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 355678899999999999999999764
No 355
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.48 E-value=0.058 Score=52.78 Aligned_cols=28 Identities=29% Similarity=0.483 Sum_probs=23.5
Q ss_pred CCCccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 385 APFRNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 385 ~p~r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
.+...+.|.||+|+|||+|.++|+..+.
T Consensus 44 ~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~ 71 (274)
T PRK14265 44 PAKKIIAFIGPSGCGKSTLLRCFNRMND 71 (274)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 3456788999999999999999996543
No 356
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=93.43 E-value=0.063 Score=53.03 Aligned_cols=27 Identities=22% Similarity=0.202 Sum_probs=23.0
Q ss_pred CCCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 385 APFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 385 ~p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
.+...+.|.||+|+|||+|+++|+..+
T Consensus 61 ~~Ge~~~liG~NGsGKSTLl~~I~Gl~ 87 (282)
T cd03291 61 EKGEMLAITGSTGSGKTSLLMLILGEL 87 (282)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345678899999999999999999654
No 357
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=93.41 E-value=0.065 Score=54.30 Aligned_cols=24 Identities=21% Similarity=0.346 Sum_probs=20.6
Q ss_pred ccEEEecCCCCcHHHHHHHHHHHh
Q 014938 388 RNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 388 r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
.-|-|.||||+|||+|+..|...+
T Consensus 57 ~~igi~G~~GaGKSTl~~~l~~~l 80 (332)
T PRK09435 57 LRIGITGVPGVGKSTFIEALGMHL 80 (332)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 457789999999999999988765
No 358
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=93.41 E-value=0.059 Score=59.44 Aligned_cols=26 Identities=27% Similarity=0.385 Sum_probs=24.2
Q ss_pred cEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 389 NMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 389 ~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
.|.+.||+|+|||++++.||..+|++
T Consensus 444 ~i~i~g~~~~gks~~~~~l~~~~~~~ 469 (661)
T PRK11860 444 VICIDGPTASGKGTVAARVAEALGYH 469 (661)
T ss_pred eEEeeCCCCCCHHHHHHHHHHHhCCe
Confidence 67789999999999999999999986
No 359
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.35 E-value=0.068 Score=52.50 Aligned_cols=26 Identities=19% Similarity=0.210 Sum_probs=22.3
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+...+.|.||+|+|||+|.++|+..+
T Consensus 32 ~Ge~~~i~G~nGaGKSTLl~~i~G~~ 57 (279)
T PRK13635 32 EGEWVAIVGHNGSGKSTLAKLLNGLL 57 (279)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34578899999999999999999654
No 360
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=93.34 E-value=0.047 Score=56.23 Aligned_cols=20 Identities=40% Similarity=0.816 Sum_probs=18.3
Q ss_pred CCCccEEEecCCCCcHHHHH
Q 014938 385 APFRNMLFYGPPGTGKTMVA 404 (415)
Q Consensus 385 ~p~r~vLl~GPPGTGKT~lA 404 (415)
.|++|+.|||.-|||||||-
T Consensus 112 ~~PkGlYlYG~VGcGKTmLM 131 (467)
T KOG2383|consen 112 GPPKGLYLYGSVGCGKTMLM 131 (467)
T ss_pred CCCceEEEecccCcchhHHH
Confidence 56899999999999999974
No 361
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=93.34 E-value=0.072 Score=52.67 Aligned_cols=29 Identities=28% Similarity=0.456 Sum_probs=22.1
Q ss_pred CCCccEE--EecCCCCcHHHHHHHHHHHhCC
Q 014938 385 APFRNML--FYGPPGTGKTMVAREIARKSVW 413 (415)
Q Consensus 385 ~p~r~vL--l~GPPGTGKT~lAkaLA~~lg~ 413 (415)
+.+++.+ +|||+|+|||++|-.++-....
T Consensus 56 Gl~~g~ItEiyG~~gsGKT~lal~~~~~aq~ 86 (279)
T COG0468 56 GLPRGRITEIYGPESSGKTTLALQLVANAQK 86 (279)
T ss_pred CcccceEEEEecCCCcchhhHHHHHHHHhhc
Confidence 3344544 8999999999999988866544
No 362
>PLN02796 D-glycerate 3-kinase
Probab=93.33 E-value=0.069 Score=54.33 Aligned_cols=23 Identities=22% Similarity=0.228 Sum_probs=20.3
Q ss_pred EEEecCCCCcHHHHHHHHHHHhC
Q 014938 390 MLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 390 vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
|-+.||+|||||++++.|...+.
T Consensus 103 IGI~G~sGSGKSTLa~~L~~lL~ 125 (347)
T PLN02796 103 IGISAPQGCGKTTLVFALVYLFN 125 (347)
T ss_pred EEEECCCCCcHHHHHHHHHHHhc
Confidence 55789999999999999998764
No 363
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.33 E-value=0.065 Score=52.87 Aligned_cols=26 Identities=15% Similarity=0.211 Sum_probs=22.7
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+...+.|.||+|+|||+|.+.|+..+
T Consensus 31 ~Ge~v~i~G~nGsGKSTLl~~l~Gl~ 56 (288)
T PRK13643 31 KGSYTALIGHTGSGKSTLLQHLNGLL 56 (288)
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCC
Confidence 45678999999999999999999654
No 364
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=93.32 E-value=0.064 Score=51.83 Aligned_cols=26 Identities=27% Similarity=0.345 Sum_probs=21.5
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+...+=+.||+|||||+++++|+...
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~Gl~ 57 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAGLE 57 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhccc
Confidence 44566699999999999999998643
No 365
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=93.32 E-value=0.11 Score=57.87 Aligned_cols=24 Identities=38% Similarity=0.686 Sum_probs=20.5
Q ss_pred ccEEEecCCCCcHHHHHHHHHHHh
Q 014938 388 RNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 388 r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+.+++.|+||||||+++++|...+
T Consensus 339 ~~~iitGgpGTGKTt~l~~i~~~~ 362 (720)
T TIGR01448 339 KVVILTGGPGTGKTTITRAIIELA 362 (720)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 478899999999999999886644
No 366
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.31 E-value=0.064 Score=52.08 Aligned_cols=26 Identities=35% Similarity=0.519 Sum_probs=23.0
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
|...+.|.||+|+|||+|.++|+..+
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (261)
T PRK14263 33 KNEITGFIGPSGCGKSTVLRSLNRMN 58 (261)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHccc
Confidence 45688899999999999999999765
No 367
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.25 E-value=0.072 Score=52.15 Aligned_cols=26 Identities=27% Similarity=0.222 Sum_probs=22.9
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+...+.|.||+|+|||+|.++|+...
T Consensus 32 ~Ge~~~I~G~nGsGKSTLl~~l~Gl~ 57 (277)
T PRK13642 32 KGEWVSIIGQNGSGKSTTARLIDGLF 57 (277)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 45689999999999999999999654
No 368
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.24 E-value=0.073 Score=52.29 Aligned_cols=26 Identities=19% Similarity=0.202 Sum_probs=22.6
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+...+.|.||+|+|||+|.++|+..+
T Consensus 32 ~Ge~~~I~G~nGaGKSTLl~~l~G~~ 57 (282)
T PRK13640 32 RGSWTALIGHNGSGKSTISKLINGLL 57 (282)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhccc
Confidence 44578899999999999999999764
No 369
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.20 E-value=0.07 Score=52.57 Aligned_cols=27 Identities=30% Similarity=0.412 Sum_probs=23.1
Q ss_pred CCCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 385 APFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 385 ~p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
.+...+.|.||+|+|||+|.+.|+...
T Consensus 63 ~~Ge~~~l~G~nGsGKSTLl~~L~Gl~ 89 (286)
T PRK14275 63 LSKYVTAIIGPSGCGKSTFLRAINRMN 89 (286)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 455678899999999999999999753
No 370
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=93.19 E-value=0.078 Score=56.61 Aligned_cols=26 Identities=38% Similarity=0.745 Sum_probs=19.9
Q ss_pred CCccEE-EecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNML-FYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vL-l~GPPGTGKT~lAkaLA~~l 411 (415)
|+.-|+ +.||||||||+|.+.|-+.+
T Consensus 67 PPPfIvavvGPpGtGKsTLirSlVrr~ 93 (1077)
T COG5192 67 PPPFIVAVVGPPGTGKSTLIRSLVRRF 93 (1077)
T ss_pred CCCeEEEeecCCCCChhHHHHHHHHHH
Confidence 344444 78999999999999887643
No 371
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=93.16 E-value=0.067 Score=58.51 Aligned_cols=23 Identities=35% Similarity=0.524 Sum_probs=18.8
Q ss_pred ccEEEecCCCCcHHHHHHHHHHH
Q 014938 388 RNMLFYGPPGTGKTMVAREIARK 410 (415)
Q Consensus 388 r~vLl~GPPGTGKT~lAkaLA~~ 410 (415)
+-+++.|+||||||++.+.|-..
T Consensus 168 ~~~vItGgpGTGKTt~v~~ll~~ 190 (615)
T PRK10875 168 RISVISGGPGTGKTTTVAKLLAA 190 (615)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHH
Confidence 35788999999999988776544
No 372
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=93.15 E-value=0.071 Score=53.21 Aligned_cols=26 Identities=19% Similarity=0.227 Sum_probs=22.6
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+...+.|.||+|+|||+|.+.|+..+
T Consensus 32 ~Ge~v~iiG~nGsGKSTLl~~L~Gl~ 57 (305)
T PRK13651 32 QGEFIAIIGQTGSGKTTFIEHLNALL 57 (305)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 45689999999999999999999653
No 373
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.15 E-value=0.07 Score=52.04 Aligned_cols=26 Identities=31% Similarity=0.502 Sum_probs=22.4
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+...+.|.||+|+|||+|.+.|+...
T Consensus 38 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 63 (269)
T PRK14259 38 RGKVTALIGPSGCGKSTVLRSLNRMN 63 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 45578899999999999999999753
No 374
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=93.12 E-value=0.085 Score=50.99 Aligned_cols=27 Identities=22% Similarity=0.341 Sum_probs=23.3
Q ss_pred CCCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 385 APFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 385 ~p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
.|...+.+.||+|+|||+|.++|+...
T Consensus 45 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 71 (257)
T cd03288 45 KPGQKVGICGRTGSGKSSLSLAFFRMV 71 (257)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHccc
Confidence 456688899999999999999999754
No 375
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.03 E-value=0.079 Score=52.16 Aligned_cols=26 Identities=19% Similarity=0.284 Sum_probs=22.5
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+...+.|.||+|+|||+|.++|+..+
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~L~Gl~ 57 (286)
T PRK13646 32 QGKYYAIVGQTGSGKSTLIQNINALL 57 (286)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45578899999999999999999654
No 376
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.01 E-value=0.079 Score=52.30 Aligned_cols=26 Identities=15% Similarity=0.239 Sum_probs=22.7
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+...+.|.||+|+|||+|.+.|+..+
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 57 (290)
T PRK13634 32 SGSYVAIIGHTGSGKSTLLQHLNGLL 57 (290)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 45688999999999999999999654
No 377
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=92.99 E-value=0.16 Score=53.21 Aligned_cols=51 Identities=25% Similarity=0.335 Sum_probs=33.0
Q ss_pred CCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 356 NNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 356 ~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
.+.++++.......+...+.... .....||+.|++|||||++|++|...+.
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~~~------~~~~~vli~Ge~GtGK~~lA~~ih~~s~ 186 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGRLS------RSSISVLINGESGTGKELVAHALHRHSP 186 (469)
T ss_pred ccccceecCHHHHHHHHHHHHHh------ccCCeEEEEeCCCCcHHHHHHHHHhcCC
Confidence 45567766544443332222111 2245799999999999999999987654
No 378
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=92.94 E-value=0.11 Score=54.84 Aligned_cols=26 Identities=31% Similarity=0.459 Sum_probs=21.2
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+..-+|++|+||+|||+|+..++...
T Consensus 93 ~GsvilI~G~pGsGKTTL~lq~a~~~ 118 (454)
T TIGR00416 93 PGSLILIGGDPGIGKSTLLLQVACQL 118 (454)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34567889999999999999887653
No 379
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.91 E-value=0.083 Score=53.11 Aligned_cols=27 Identities=15% Similarity=0.262 Sum_probs=23.0
Q ss_pred CCCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 385 APFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 385 ~p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
.+...+.|.||+|+|||+|.++|+..+
T Consensus 50 ~~Ge~~~I~G~nGsGKSTLl~~L~Gl~ 76 (320)
T PRK13631 50 EKNKIYFIIGNSGSGKSTLVTHFNGLI 76 (320)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345678899999999999999999654
No 380
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.91 E-value=0.084 Score=51.17 Aligned_cols=26 Identities=23% Similarity=0.374 Sum_probs=22.7
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+...+.|.||+|+|||+|.+.|+...
T Consensus 35 ~Ge~~~i~G~nGsGKSTLl~~iaG~~ 60 (257)
T PRK14246 35 NNSIFGIMGPSGSGKSTLLKVLNRLI 60 (257)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45678899999999999999999654
No 381
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.90 E-value=0.08 Score=51.34 Aligned_cols=26 Identities=27% Similarity=0.396 Sum_probs=22.7
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+...+.|.||+|+|||+|.+.|+...
T Consensus 41 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 66 (265)
T PRK14252 41 EKQVTALIGPSGCGKSTFLRCFNRMH 66 (265)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccc
Confidence 45678899999999999999999654
No 382
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=92.90 E-value=0.084 Score=51.78 Aligned_cols=26 Identities=19% Similarity=0.344 Sum_probs=22.3
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+...+.|.||+|+|||+|.++|+..+
T Consensus 35 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 60 (280)
T PRK13633 35 KGEFLVILGRNGSGKSTIAKHMNALL 60 (280)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44578899999999999999999654
No 383
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.88 E-value=0.078 Score=51.98 Aligned_cols=26 Identities=31% Similarity=0.484 Sum_probs=22.6
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+...+.|.||+|+|||+|.+.|+..+
T Consensus 46 ~Ge~~~I~G~nGsGKSTLl~~l~Gl~ 71 (276)
T PRK14271 46 ARAVTSLMGPTGSGKTTFLRTLNRMN 71 (276)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccC
Confidence 45678899999999999999999653
No 384
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=92.86 E-value=0.093 Score=55.75 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=20.4
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHH
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARK 410 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~ 410 (415)
+...+|+.||||||||+|+-.++..
T Consensus 262 ~gs~~li~G~~G~GKt~l~~~f~~~ 286 (484)
T TIGR02655 262 KDSIILATGATGTGKTLLVSKFLEN 286 (484)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3456888999999999999887754
No 385
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=92.82 E-value=0.19 Score=52.19 Aligned_cols=26 Identities=35% Similarity=0.484 Sum_probs=22.7
Q ss_pred CccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
..+|+++|+|||||+++|+++-..++
T Consensus 162 ~~~vli~Ge~GtGK~~lA~~ih~~s~ 187 (445)
T TIGR02915 162 DITVLLLGESGTGKEVLARALHQLSD 187 (445)
T ss_pred CCCEEEECCCCcCHHHHHHHHHHhCC
Confidence 45899999999999999999987654
No 386
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=92.82 E-value=0.08 Score=54.98 Aligned_cols=27 Identities=22% Similarity=0.329 Sum_probs=22.9
Q ss_pred CCCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 385 APFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 385 ~p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
.+...+.|.||+|||||+|.++|+..+
T Consensus 52 ~~Gei~~LvG~NGsGKSTLLr~I~Gl~ 78 (400)
T PRK10070 52 EEGEIFVIMGLSGSGKSTMVRLLNRLI 78 (400)
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 345678899999999999999999654
No 387
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.79 E-value=0.083 Score=52.08 Aligned_cols=26 Identities=31% Similarity=0.446 Sum_probs=22.7
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+...+.|.||+|+|||+|.+.|+...
T Consensus 64 ~Ge~~~I~G~nGsGKSTLl~~l~Gl~ 89 (285)
T PRK14254 64 ENQVTAMIGPSGCGKSTFLRCINRMN 89 (285)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 45678899999999999999999764
No 388
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=92.76 E-value=0.085 Score=57.44 Aligned_cols=23 Identities=35% Similarity=0.453 Sum_probs=18.8
Q ss_pred ccEEEecCCCCcHHHHHHHHHHH
Q 014938 388 RNMLFYGPPGTGKTMVAREIARK 410 (415)
Q Consensus 388 r~vLl~GPPGTGKT~lAkaLA~~ 410 (415)
+-+++.|+||||||++...|...
T Consensus 161 ~~~vitGgpGTGKTt~v~~ll~~ 183 (586)
T TIGR01447 161 NFSLITGGPGTGKTTTVARLLLA 183 (586)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHH
Confidence 46788999999999988776543
No 389
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=92.76 E-value=0.14 Score=57.44 Aligned_cols=40 Identities=18% Similarity=0.251 Sum_probs=27.7
Q ss_pred cCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHH
Q 014938 361 ILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARK 410 (415)
Q Consensus 361 v~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~ 410 (415)
.+.++....+..+... .+-++|.|+||||||++.+++...
T Consensus 352 ~Ls~~Q~~Av~~i~~s----------~~~~il~G~aGTGKTtll~~i~~~ 391 (744)
T TIGR02768 352 RLSEEQYEAVRHVTGS----------GDIAVVVGRAGTGKSTMLKAAREA 391 (744)
T ss_pred CCCHHHHHHHHHHhcC----------CCEEEEEecCCCCHHHHHHHHHHH
Confidence 3456655555544311 236789999999999999998754
No 390
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.75 E-value=0.09 Score=51.69 Aligned_cols=26 Identities=15% Similarity=0.166 Sum_probs=22.8
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+...+.|.||+|+|||+|.++|+..+
T Consensus 31 ~Ge~~~i~G~nGaGKSTLl~~i~Gl~ 56 (283)
T PRK13636 31 KGEVTAILGGNGAGKSTLFQNLNGIL 56 (283)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45688999999999999999999754
No 391
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.72 E-value=0.14 Score=57.23 Aligned_cols=25 Identities=28% Similarity=0.472 Sum_probs=21.1
Q ss_pred CccEEEecCCCCcHHHHHHHHHHHh
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
.+-|+|+||+|+|||+++..||..+
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~ 209 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARC 209 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhH
Confidence 3467899999999999999998654
No 392
>COG1485 Predicted ATPase [General function prediction only]
Probab=92.70 E-value=0.15 Score=51.69 Aligned_cols=26 Identities=31% Similarity=0.600 Sum_probs=21.2
Q ss_pred cCCCccEEEecCCCCcHHHHHHHHHH
Q 014938 384 QAPFRNMLFYGPPGTGKTMVAREIAR 409 (415)
Q Consensus 384 ~~p~r~vLl~GPPGTGKT~lAkaLA~ 409 (415)
..|++|+.||||-|+|||+|--..-.
T Consensus 62 ~~~~~GlYl~GgVGrGKT~LMD~Fy~ 87 (367)
T COG1485 62 HGPVRGLYLWGGVGRGKTMLMDLFYE 87 (367)
T ss_pred CCCCceEEEECCCCccHHHHHHHHHh
Confidence 34789999999999999998655443
No 393
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.64 E-value=0.094 Score=50.66 Aligned_cols=26 Identities=27% Similarity=0.418 Sum_probs=22.5
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+...+.|.||+|+|||+|.++|+...
T Consensus 37 ~Ge~~~i~G~nGsGKSTLl~~i~Gl~ 62 (258)
T PRK14268 37 KNSVTALIGPSGCGKSTFIRCLNRMN 62 (258)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45678899999999999999999654
No 394
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.60 E-value=0.091 Score=50.89 Aligned_cols=27 Identities=22% Similarity=0.381 Sum_probs=23.5
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
+...+.|.||+|+|||+|.+.|+....
T Consensus 32 ~Ge~~~I~G~nGsGKSTLl~~l~Gl~~ 58 (261)
T PRK14258 32 QSKVTAIIGPSGCGKSTFLKCLNRMNE 58 (261)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcccC
Confidence 456899999999999999999997643
No 395
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=92.51 E-value=0.13 Score=57.28 Aligned_cols=49 Identities=24% Similarity=0.352 Sum_probs=35.2
Q ss_pred cCCCccccCChhHHHHHHHH-HHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 354 IKNNGDIILHPSLQRRIQHL-AKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 354 ~~~~ddvv~~~~l~~~l~~l-~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
...+|-|||-++-..++-++ .+-+ ..|-+|.|+||+|||-++-.||...
T Consensus 166 ~gklDPvIGRd~EI~r~iqIL~RR~---------KNNPvLiGEpGVGKTAIvEGLA~rI 215 (786)
T COG0542 166 EGKLDPVIGRDEEIRRTIQILSRRT---------KNNPVLVGEPGVGKTAIVEGLAQRI 215 (786)
T ss_pred cCCCCCCcChHHHHHHHHHHHhccC---------CCCCeEecCCCCCHHHHHHHHHHHH
Confidence 44667788877665544333 3222 3488999999999999999999764
No 396
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=92.46 E-value=0.21 Score=53.34 Aligned_cols=56 Identities=32% Similarity=0.336 Sum_probs=38.4
Q ss_pred ccccCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 351 VEAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 351 ~~~~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
......|+++++....-.++...+.- .-....+||++|-+||||-+||+++=+.+.
T Consensus 238 ~~a~y~f~~Iig~S~~m~~~~~~akr------~A~tdstVLi~GESGTGKElfA~~IH~~S~ 293 (560)
T COG3829 238 LKAKYTFDDIIGESPAMLRVLELAKR------IAKTDSTVLILGESGTGKELFARAIHNLSP 293 (560)
T ss_pred cccccchhhhccCCHHHHHHHHHHHh------hcCCCCcEEEecCCCccHHHHHHHHHhcCc
Confidence 34567899999866544433333222 122356899999999999999999866543
No 397
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=92.45 E-value=0.1 Score=52.62 Aligned_cols=26 Identities=23% Similarity=0.346 Sum_probs=22.9
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+...+.|.||+|+|||+|+++|+..+
T Consensus 32 ~Ge~~~ivG~sGsGKSTLl~~i~Gl~ 57 (330)
T PRK15093 32 EGEIRGLVGESGSGKSLIAKAICGVT 57 (330)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHccC
Confidence 45578899999999999999999875
No 398
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=92.44 E-value=0.12 Score=50.84 Aligned_cols=26 Identities=27% Similarity=0.491 Sum_probs=22.9
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+...++|+||+|+|||+++..|+..+
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l 99 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQF 99 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHH
Confidence 45689999999999999999998764
No 399
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=92.44 E-value=0.1 Score=55.73 Aligned_cols=28 Identities=21% Similarity=0.354 Sum_probs=24.2
Q ss_pred CCCccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 385 APFRNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 385 ~p~r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
.|...+.+.||+|+|||+|++.|++...
T Consensus 359 ~~G~~vaIvG~SGsGKSTLl~lL~g~~~ 386 (529)
T TIGR02868 359 PPGERVAILGPSGSGKSTLLMLLTGLLD 386 (529)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4667899999999999999999986543
No 400
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.43 E-value=0.21 Score=52.87 Aligned_cols=51 Identities=24% Similarity=0.264 Sum_probs=34.3
Q ss_pred cCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhCC
Q 014938 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSVW 413 (415)
Q Consensus 354 ~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~ 413 (415)
..+|+++.+.+.....+..++. .|..=||+.||+|+|||+...++-..++-
T Consensus 234 ~l~l~~Lg~~~~~~~~~~~~~~---------~p~GliLvTGPTGSGKTTTLY~~L~~ln~ 284 (500)
T COG2804 234 ILDLEKLGMSPFQLARLLRLLN---------RPQGLILVTGPTGSGKTTTLYAALSELNT 284 (500)
T ss_pred cCCHHHhCCCHHHHHHHHHHHh---------CCCeEEEEeCCCCCCHHHHHHHHHHHhcC
Confidence 4456666666665555554442 34445667899999999988877766653
No 401
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.40 E-value=0.11 Score=51.28 Aligned_cols=26 Identities=15% Similarity=0.202 Sum_probs=22.5
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+...+.|.||+|+|||+|.++|+..+
T Consensus 32 ~Ge~~~iiG~NGaGKSTLl~~l~Gl~ 57 (287)
T PRK13641 32 EGSFVALVGHTGSGKSTLMQHFNALL 57 (287)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45678899999999999999999654
No 402
>PRK11519 tyrosine kinase; Provisional
Probab=92.40 E-value=3.9 Score=45.77 Aligned_cols=44 Identities=25% Similarity=0.283 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHhhhhhcCCCccEEEecC-CCCcHHHHHHHHHHHh
Q 014938 367 QRRIQHLAKATANTKIHQAPFRNMLFYGP-PGTGKTMVAREIARKS 411 (415)
Q Consensus 367 ~~~l~~l~~~~~~~k~~~~p~r~vLl~GP-PGTGKT~lAkaLA~~l 411 (415)
.+.++.+........ ...+.+-|++.++ ||.|||+++..||..+
T Consensus 507 ~Ea~r~lrt~l~~~~-~~~~~kvi~vts~~~geGKTt~a~nLA~~l 551 (719)
T PRK11519 507 IEAIRSLRTSLHFAM-MQAQNNVLMMTGVSPSIGKTFVCANLAAVI 551 (719)
T ss_pred HHHHHHHHHHhhhhc-cCCCceEEEEECCCCCCCHHHHHHHHHHHH
Confidence 345555554433221 1234567778884 9999999999998765
No 403
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.37 E-value=0.1 Score=51.91 Aligned_cols=27 Identities=26% Similarity=0.400 Sum_probs=23.2
Q ss_pred CCCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 385 APFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 385 ~p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
.+...+.|.||+|+|||+|.++|+..+
T Consensus 69 ~~Ge~~~IvG~nGsGKSTLl~~L~Gl~ 95 (305)
T PRK14264 69 PEKSVTALIGPSGCGKSTFLRCLNRMN 95 (305)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 355678899999999999999999754
No 404
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=92.34 E-value=4.5 Score=45.30 Aligned_cols=45 Identities=18% Similarity=0.266 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHhhhhhcCCCccEEEecC-CCCcHHHHHHHHHHHhC
Q 014938 367 QRRIQHLAKATANTKIHQAPFRNMLFYGP-PGTGKTMVAREIARKSV 412 (415)
Q Consensus 367 ~~~l~~l~~~~~~~k~~~~p~r~vLl~GP-PGTGKT~lAkaLA~~lg 412 (415)
.+.++.+........ ...+.+-|++.|+ ||+|||++|..||..+.
T Consensus 512 ~Ea~r~lrt~l~~~~-~~~~~kvI~vtS~~~g~GKTtva~nLA~~la 557 (726)
T PRK09841 512 VEAVRALRTSLHFAM-METENNILMITGATPDSGKTFVSSTLAAVIA 557 (726)
T ss_pred HHHHHHHHHHhhhhc-cCCCCeEEEEecCCCCCCHHHHHHHHHHHHH
Confidence 345555555433221 1234567888887 79999999999987653
No 405
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=92.29 E-value=0.11 Score=51.83 Aligned_cols=26 Identities=27% Similarity=0.327 Sum_probs=22.2
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+...+.|.||.|+|||+|.+.|+..+
T Consensus 32 ~Gei~gllGpNGaGKSTLl~~l~Gl~ 57 (306)
T PRK13537 32 RGECFGLLGPNGAGKTTTLRMLLGLT 57 (306)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 34568899999999999999999654
No 406
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=92.24 E-value=0.12 Score=52.17 Aligned_cols=26 Identities=23% Similarity=0.346 Sum_probs=22.5
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+...+.|.||+|+|||+|+++|+..+
T Consensus 40 ~Ge~~~IvG~sGsGKSTLl~~l~gl~ 65 (327)
T PRK11308 40 RGKTLAVVGESGCGKSTLARLLTMIE 65 (327)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHcCC
Confidence 45678899999999999999998654
No 407
>PLN02318 phosphoribulokinase/uridine kinase
Probab=92.24 E-value=0.15 Score=55.40 Aligned_cols=24 Identities=25% Similarity=0.351 Sum_probs=20.6
Q ss_pred ccEEEecCCCCcHHHHHHHHHHHh
Q 014938 388 RNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 388 r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
.-|.+.||+|+|||+|++.|+..+
T Consensus 66 iIIGIaGpSGSGKTTLAk~LaglL 89 (656)
T PLN02318 66 ILVGVAGPSGAGKTVFTEKVLNFM 89 (656)
T ss_pred EEEEEECCCCCcHHHHHHHHHhhC
Confidence 345678999999999999999875
No 408
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.22 E-value=0.11 Score=51.10 Aligned_cols=26 Identities=15% Similarity=0.188 Sum_probs=22.4
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+...+.|.||+|+|||+|.++|+..+
T Consensus 32 ~Ge~~~i~G~nGaGKSTLl~~l~Gl~ 57 (287)
T PRK13637 32 DGEFVGLIGHTGSGKSTLIQHLNGLL 57 (287)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 45678899999999999999999654
No 409
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=92.10 E-value=0.12 Score=47.02 Aligned_cols=24 Identities=17% Similarity=0.462 Sum_probs=21.2
Q ss_pred ccEEEecCCCCcHHHHHHHHHHHh
Q 014938 388 RNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 388 r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+-++|.||+|+|||+|..+|....
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 689999999999999999987543
No 410
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=92.06 E-value=0.12 Score=55.54 Aligned_cols=28 Identities=29% Similarity=0.386 Sum_probs=24.5
Q ss_pred CCCccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 385 APFRNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 385 ~p~r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
.|...+.+.||+|+|||+|++.|++...
T Consensus 342 ~~G~~~~ivG~sGsGKSTL~~ll~g~~~ 369 (544)
T TIGR01842 342 QAGEALAIIGPSGSGKSTLARLIVGIWP 369 (544)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4677899999999999999999997653
No 411
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=92.05 E-value=0.1 Score=52.63 Aligned_cols=27 Identities=19% Similarity=0.192 Sum_probs=23.0
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
+...+.|.||+|||||+|+++|+..+.
T Consensus 41 ~Ge~~~ivG~sGsGKSTL~~~l~Gl~~ 67 (330)
T PRK09473 41 AGETLGIVGESGSGKSQTAFALMGLLA 67 (330)
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCCC
Confidence 455788999999999999999997653
No 412
>PF06431 Polyoma_lg_T_C: Polyomavirus large T antigen C-terminus; InterPro: IPR010932 The group of polyomaviruses is formed by the homonymous murine virus (Py) as well as other representative members such as the simian virus 40 (SV40) and the human BK and JC viruses []. Their large T antigen (T-ag) protein binds to and activates DNA replication from the origin of DNA replication (ori). Insofar as is known, the T-ag binds to the origin first as a monomer to its pentanucleotide recognition element. The monomers are then thought to assemble into hexamers and double hexamers, which constitute the form that is active in initiation of DNA replication. When bound to the ori, T-ag double hexamers encircle DNA []. T-ag is a multidomain protein that contains an N-terminal J domain, which mediates protein interactions (see PDOC00553 from PROSITEDOC, IPR001623 from INTERPRO), a central origin-binding domain (OBD), and a C-terminal superfamily 3 helicase domain (see PDOC51206 from PROSITEDOC, IPR010932 from INTERPRO) []. This entry represents the helicase domain of LTag, which assembles into a hexameric structure containing a positively charged central channel that can bind both single- and double-stranded DNA []. ATP binding and hydrolysis trigger large conformational changes which are thought to be coupled to the melting of origin DNA and the unwinding of duplex DNA []. These conformational changes cause the angles and orientations between regions of a monomer to alter, creating what was described as an "iris"-like motion in the hexamer. In addition to this, six beta hairpins on the channel surface move longitudinally along the central channel, possibly serving as a motor for pulling DNA into the LTag double hexamer for unwinding.; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 2H1L_H 1SVO_A 1SVM_E 1SVL_B 1N25_A 4E2I_K.
Probab=92.02 E-value=0.3 Score=50.04 Aligned_cols=26 Identities=35% Similarity=0.431 Sum_probs=20.9
Q ss_pred CccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
.|++||-||--||||++|-+|=..+|
T Consensus 155 kRy~lFkGPvNsGKTTlAAAlLdL~g 180 (417)
T PF06431_consen 155 KRYWLFKGPVNSGKTTLAAALLDLCG 180 (417)
T ss_dssp B-EEEEE-STTSSHHHHHHHHHHHH-
T ss_pred ceeEEEecCcCCchHHHHHHHHHhcC
Confidence 68999999999999999999977655
No 413
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=92.01 E-value=0.23 Score=51.73 Aligned_cols=26 Identities=38% Similarity=0.553 Sum_probs=22.4
Q ss_pred CccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
..++|++|++||||+++|+++...+.
T Consensus 166 ~~~vli~Ge~GtGK~~lA~~ih~~s~ 191 (457)
T PRK11361 166 QASVLISGESGTGKELIARAIHYNSR 191 (457)
T ss_pred CcEEEEEcCCCccHHHHHHHHHHhCC
Confidence 45899999999999999999976543
No 414
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=91.95 E-value=0.13 Score=52.05 Aligned_cols=26 Identities=27% Similarity=0.286 Sum_probs=22.2
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+...+.|.||+|+|||+|+++|+..+
T Consensus 46 ~Ge~~~lvG~sGsGKSTLlk~i~Gl~ 71 (331)
T PRK15079 46 EGETLGVVGESGCGKSTFARAIIGLV 71 (331)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 34578899999999999999998654
No 415
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=91.94 E-value=0.12 Score=52.17 Aligned_cols=27 Identities=19% Similarity=0.135 Sum_probs=22.7
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
+..-+-|.||+|+|||+|+++|+..+.
T Consensus 32 ~Ge~~~lvG~sGsGKSTL~~~l~Gll~ 58 (326)
T PRK11022 32 QGEVVGIVGESGSGKSVSSLAIMGLID 58 (326)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 345677999999999999999997653
No 416
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=91.94 E-value=0.12 Score=52.20 Aligned_cols=28 Identities=25% Similarity=0.434 Sum_probs=23.9
Q ss_pred CCCccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 385 APFRNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 385 ~p~r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
.+...+.|.||+|+|||+|.++|++...
T Consensus 106 ~~Ge~v~IvG~~GsGKSTLl~~L~g~~~ 133 (329)
T PRK14257 106 KRNKVTAFIGPSGCGKSTFLRNLNQLND 133 (329)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 4556799999999999999999997653
No 417
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=91.90 E-value=0.15 Score=55.12 Aligned_cols=28 Identities=21% Similarity=0.332 Sum_probs=24.4
Q ss_pred CCCccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 385 APFRNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 385 ~p~r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
.|...+.+.||+|+|||+|++.|++...
T Consensus 367 ~~G~~~aIvG~sGsGKSTLl~ll~gl~~ 394 (582)
T PRK11176 367 PAGKTVALVGRSGSGKSTIANLLTRFYD 394 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 4567899999999999999999997654
No 418
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=91.83 E-value=0.15 Score=54.40 Aligned_cols=24 Identities=38% Similarity=0.505 Sum_probs=20.2
Q ss_pred CccEEEecCCCCcHHHHHHHHHHH
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARK 410 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~ 410 (415)
...+|++||||||||+|+..++..
T Consensus 273 g~~~li~G~~G~GKT~l~~~~~~~ 296 (509)
T PRK09302 273 GSIILVSGATGTGKTLLASKFAEA 296 (509)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 456788999999999999888754
No 419
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=91.82 E-value=0.13 Score=55.60 Aligned_cols=28 Identities=18% Similarity=0.260 Sum_probs=24.5
Q ss_pred CCCccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 385 APFRNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 385 ~p~r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
.|...+.+.||+|+|||+|++.|++...
T Consensus 364 ~~G~~~aivG~sGsGKSTL~~ll~g~~~ 391 (574)
T PRK11160 364 KAGEKVALLGRTGCGKSTLLQLLTRAWD 391 (574)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4667899999999999999999997653
No 420
>PRK12678 transcription termination factor Rho; Provisional
Probab=91.79 E-value=0.13 Score=55.59 Aligned_cols=25 Identities=32% Similarity=0.436 Sum_probs=22.3
Q ss_pred CccEEEecCCCCcHHHHHHHHHHHh
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
...+|++||||||||+|+..||+.+
T Consensus 416 GQR~LIvgpp~aGKTtLL~~IAn~i 440 (672)
T PRK12678 416 GQRGLIVSPPKAGKTTILQNIANAI 440 (672)
T ss_pred CCEeEEeCCCCCCHHHHHHHHHHHH
Confidence 4579999999999999999999855
No 421
>KOG3928 consensus Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 [Translation, ribosomal structure and biogenesis]
Probab=91.70 E-value=0.13 Score=53.17 Aligned_cols=18 Identities=39% Similarity=0.909 Sum_probs=16.2
Q ss_pred CCCccEEEecCCCCcHHH
Q 014938 385 APFRNMLFYGPPGTGKTM 402 (415)
Q Consensus 385 ~p~r~vLl~GPPGTGKT~ 402 (415)
.|-..++|||+||||||.
T Consensus 177 ~P~~r~vL~Ge~GtGKSi 194 (461)
T KOG3928|consen 177 HPVKRFVLDGEPGTGKSI 194 (461)
T ss_pred CcceEEEEeCCCCCchhh
Confidence 567789999999999996
No 422
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=91.66 E-value=0.16 Score=54.64 Aligned_cols=28 Identities=25% Similarity=0.393 Sum_probs=24.5
Q ss_pred CCCccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 385 APFRNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 385 ~p~r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
.|...+++.||+|+|||+|++.|++.+.
T Consensus 364 ~~Ge~i~IvG~sGsGKSTLlklL~gl~~ 391 (576)
T TIGR02204 364 RPGETVALVGPSGAGKSTLFQLLLRFYD 391 (576)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 4677899999999999999999997653
No 423
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=91.62 E-value=0.16 Score=52.53 Aligned_cols=25 Identities=32% Similarity=0.541 Sum_probs=19.0
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHH
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARK 410 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~ 410 (415)
+.+.|.|.||+|+|||+..--||..
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar 226 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAAR 226 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHH
Confidence 3578899999999999855545543
No 424
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=91.58 E-value=0.15 Score=56.02 Aligned_cols=26 Identities=27% Similarity=0.468 Sum_probs=22.9
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
++.-|+|+|+||+|||++|+.|+..+
T Consensus 459 ~~~~i~~~G~~gsGKst~a~~l~~~l 484 (632)
T PRK05506 459 KPATVWFTGLSGSGKSTIANLVERRL 484 (632)
T ss_pred CcEEEEecCCCCchHHHHHHHHHHHH
Confidence 35667889999999999999999886
No 425
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=91.55 E-value=0.13 Score=54.75 Aligned_cols=26 Identities=19% Similarity=0.153 Sum_probs=22.3
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+..-+.|.||+|+|||+|.++|+..+
T Consensus 288 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 313 (510)
T PRK09700 288 RGEILGFAGLVGSGRTELMNCLFGVD 313 (510)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 44568899999999999999999654
No 426
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=91.52 E-value=0.15 Score=51.67 Aligned_cols=26 Identities=31% Similarity=0.441 Sum_probs=22.4
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+..-+.|.||+|+|||+|.+.|+..+
T Consensus 66 ~Gei~gLlGpNGaGKSTLl~~L~Gl~ 91 (340)
T PRK13536 66 SGECFGLLGPNGAGKSTIARMILGMT 91 (340)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 45578899999999999999999754
No 427
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=91.49 E-value=0.16 Score=54.98 Aligned_cols=27 Identities=30% Similarity=0.460 Sum_probs=23.7
Q ss_pred CCCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 385 APFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 385 ~p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
.|...+.+.||+|+|||+|++.|++..
T Consensus 339 ~~G~~~~ivG~sGsGKSTLl~ll~g~~ 365 (569)
T PRK10789 339 KPGQMLGICGPTGSGKSTLLSLIQRHF 365 (569)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 456789999999999999999998764
No 428
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=91.37 E-value=0.15 Score=54.40 Aligned_cols=25 Identities=32% Similarity=0.546 Sum_probs=22.6
Q ss_pred CCCccEEEecCCCCcHHHHHHHHHH
Q 014938 385 APFRNMLFYGPPGTGKTMVAREIAR 409 (415)
Q Consensus 385 ~p~r~vLl~GPPGTGKT~lAkaLA~ 409 (415)
.|.-++|+.||.||||+++=+.|+.
T Consensus 506 ~~G~hLLItGPNGCGKSSLfRILgg 530 (728)
T KOG0064|consen 506 EPGMHLLITGPNGCGKSSLFRILGG 530 (728)
T ss_pred cCCceEEEECCCCccHHHHHHHHhc
Confidence 5677999999999999999999985
No 429
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=91.29 E-value=0.15 Score=54.91 Aligned_cols=26 Identities=27% Similarity=0.353 Sum_probs=22.5
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+...+.|.||+|+|||+|.++|+..+
T Consensus 32 ~Ge~~~iiG~NGsGKSTLlk~i~G~~ 57 (556)
T PRK11819 32 PGAKIGVLGLNGAGKSTLLRIMAGVD 57 (556)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44578899999999999999999654
No 430
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=91.25 E-value=0.15 Score=57.49 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=0.0
Q ss_pred EEecCCCCcHHHHHHHHHHHhCCCC
Q 014938 391 LFYGPPGTGKTMVAREIARKSVWCS 415 (415)
Q Consensus 391 Ll~GPPGTGKT~lAkaLA~~lg~~~ 415 (415)
|+.||.||||++++++||--+|.++
T Consensus 46 mIiGpNGSGKSSiVcAIcLglgG~P 70 (1072)
T KOG0979|consen 46 MIIGPNGSGKSSIVCAICLGLGGKP 70 (1072)
T ss_pred eEECCCCCCchHHHHHHHHHcCCCh
No 431
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=91.23 E-value=0.16 Score=55.85 Aligned_cols=27 Identities=22% Similarity=0.367 Sum_probs=23.1
Q ss_pred CCCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 385 APFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 385 ~p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
.+...+.|.||+|+|||+|.++|+..+
T Consensus 336 ~~Ge~~~l~G~NGsGKSTLlk~l~G~~ 362 (638)
T PRK10636 336 VPGSRIGLLGRNGAGKSTLIKLLAGEL 362 (638)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345678899999999999999999754
No 432
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=91.23 E-value=0.17 Score=54.07 Aligned_cols=28 Identities=21% Similarity=0.343 Sum_probs=24.2
Q ss_pred CCCccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 385 APFRNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 385 ~p~r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
.|...+.+.||+|+|||+|++.|++...
T Consensus 346 ~~G~~~~ivG~sGsGKSTL~~ll~g~~~ 373 (529)
T TIGR02857 346 PPGERVALVGPSGAGKSTLLNLLLGFVD 373 (529)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5667899999999999999999987543
No 433
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=91.13 E-value=0.19 Score=57.11 Aligned_cols=52 Identities=19% Similarity=0.198 Sum_probs=31.1
Q ss_pred cccCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHH
Q 014938 352 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMV 403 (415)
Q Consensus 352 ~~~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~l 403 (415)
...+.||.|.|+..-.+.|-.-+.......--.+---.|+-||++|||||+.
T Consensus 94 ~k~ftFDkVFGpes~Q~d~Y~~~v~p~i~eVl~GyNCTIFAYGQTGTGKTyT 145 (1041)
T KOG0243|consen 94 DKTFTFDKVFGPESQQEDLYDQAVSPIIKEVLEGYNCTIFAYGQTGTGKTYT 145 (1041)
T ss_pred cceeecceeeCcchhHHHHHHHHHHHHHHHHhccCCceEEEecCCCCCceee
Confidence 3457899888877665544333333222111112223688899999999974
No 434
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=91.11 E-value=0.16 Score=54.27 Aligned_cols=26 Identities=23% Similarity=0.353 Sum_probs=22.2
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+...+.|.||+|+|||+|.++|+..+
T Consensus 344 ~Ge~~~l~G~NGsGKSTLl~~i~G~~ 369 (530)
T PRK15064 344 AGERLAIIGENGVGKTTLLRTLVGEL 369 (530)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45578899999999999999999643
No 435
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=91.11 E-value=0.15 Score=50.92 Aligned_cols=20 Identities=35% Similarity=0.738 Sum_probs=17.0
Q ss_pred cEEEecCCCCcHHHHHHHHH
Q 014938 389 NMLFYGPPGTGKTMVAREIA 408 (415)
Q Consensus 389 ~vLl~GPPGTGKT~lAkaLA 408 (415)
-.++|||+||||+.|.+.|-
T Consensus 89 I~~VYGPTG~GKSqLlRNLi 108 (369)
T PF02456_consen 89 IGVVYGPTGSGKSQLLRNLI 108 (369)
T ss_pred EEEEECCCCCCHHHHHHHhh
Confidence 35679999999999999763
No 436
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=91.01 E-value=0.24 Score=50.24 Aligned_cols=24 Identities=29% Similarity=0.429 Sum_probs=22.0
Q ss_pred ccEEEecCCCCcHHHHHHHHHHHh
Q 014938 388 RNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 388 r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
.|+|+.|-.|+|||++..+|..+.
T Consensus 174 ~NILisGGTGSGKTTlLNal~~~i 197 (355)
T COG4962 174 CNILISGGTGSGKTTLLNALSGFI 197 (355)
T ss_pred eeEEEeCCCCCCHHHHHHHHHhcC
Confidence 599999999999999999998654
No 437
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=90.98 E-value=0.18 Score=54.27 Aligned_cols=27 Identities=19% Similarity=0.224 Sum_probs=23.7
Q ss_pred CCCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 385 APFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 385 ~p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
.|...+.+.||+|+|||+|++.|++..
T Consensus 347 ~~G~~~aivG~sGsGKSTL~~ll~g~~ 373 (547)
T PRK10522 347 KRGELLFLIGGNGSGKSTLAMLLTGLY 373 (547)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456789999999999999999999654
No 438
>KOG1433 consensus DNA repair protein RAD51/RHP55 [Replication, recombination and repair]
Probab=90.82 E-value=0.17 Score=51.03 Aligned_cols=20 Identities=40% Similarity=0.757 Sum_probs=18.2
Q ss_pred EEecCCCCcHHHHHHHHHHH
Q 014938 391 LFYGPPGTGKTMVAREIARK 410 (415)
Q Consensus 391 Ll~GPPGTGKT~lAkaLA~~ 410 (415)
.||||||||||-||..++..
T Consensus 115 Ei~G~p~~GKtQlc~~~~v~ 134 (326)
T KOG1433|consen 115 ELVGPPGSGKTQLCHTLAVT 134 (326)
T ss_pred EEecCCCccHHHHHHHHHHh
Confidence 48999999999999998875
No 439
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=90.80 E-value=0.19 Score=54.41 Aligned_cols=27 Identities=26% Similarity=0.468 Sum_probs=23.7
Q ss_pred CCCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 385 APFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 385 ~p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
.|...+.+.||+|+|||+|++.|++..
T Consensus 359 ~~G~~v~IvG~sGsGKSTLl~lL~gl~ 385 (588)
T PRK13657 359 KPGQTVAIVGPTGAGKSTLINLLQRVF 385 (588)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 466789999999999999999998654
No 440
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=90.74 E-value=0.18 Score=54.56 Aligned_cols=27 Identities=22% Similarity=0.349 Sum_probs=24.0
Q ss_pred CCCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 385 APFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 385 ~p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
.|...+.+.||+|+|||+|++.|++..
T Consensus 374 ~~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 374 PAGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 466789999999999999999998765
No 441
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=90.71 E-value=0.23 Score=53.40 Aligned_cols=28 Identities=25% Similarity=0.368 Sum_probs=24.2
Q ss_pred CCCccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 385 APFRNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 385 ~p~r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
.+...+.+.||+|+|||+|.+.|++...
T Consensus 356 ~~G~~v~IvG~sGsGKSTLl~lL~gl~~ 383 (571)
T TIGR02203 356 EPGETVALVGRSGSGKSTLVNLIPRFYE 383 (571)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 4567899999999999999999997653
No 442
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=90.71 E-value=0.19 Score=55.40 Aligned_cols=27 Identities=26% Similarity=0.413 Sum_probs=23.5
Q ss_pred CCCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 385 APFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 385 ~p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
.+...+.+.||+|+|||+|.+.|++..
T Consensus 476 ~~Ge~~~IvG~nGsGKSTLl~lL~Gl~ 502 (659)
T TIGR00954 476 PSGNHLLICGPNGCGKSSLFRILGELW 502 (659)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456789999999999999999999754
No 443
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=90.64 E-value=0.19 Score=53.64 Aligned_cols=26 Identities=23% Similarity=0.235 Sum_probs=22.0
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+..-+.|.||+|+|||+|.++|+..+
T Consensus 36 ~Ge~~~liG~NGsGKSTLl~~l~Gl~ 61 (510)
T PRK15439 36 AGEVHALLGGNGAGKSTLMKIIAGIV 61 (510)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34568899999999999999999654
No 444
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=90.63 E-value=0.17 Score=54.13 Aligned_cols=26 Identities=27% Similarity=0.382 Sum_probs=22.4
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+...+.|.||+|+|||+|++.|+..+
T Consensus 34 ~Ge~~~iiG~nGsGKSTLl~~i~G~~ 59 (529)
T PRK15134 34 AGETLALVGESGSGKSVTALSILRLL 59 (529)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34578899999999999999999764
No 445
>PLN03140 ABC transporter G family member; Provisional
Probab=90.63 E-value=0.15 Score=61.24 Aligned_cols=27 Identities=41% Similarity=0.635 Sum_probs=23.6
Q ss_pred CCCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 385 APFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 385 ~p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
.|.+-++|.||||+|||+|.++|++.+
T Consensus 189 ~~Ge~~~llGpnGSGKSTLLk~LaG~l 215 (1470)
T PLN03140 189 KPSRMTLLLGPPSSGKTTLLLALAGKL 215 (1470)
T ss_pred eCCeEEEEEcCCCCCHHHHHHHHhCCC
Confidence 456678899999999999999999765
No 446
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=90.60 E-value=0.2 Score=51.79 Aligned_cols=26 Identities=19% Similarity=0.299 Sum_probs=22.3
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+..-+.|.||+|+|||+|.++|+..+
T Consensus 49 ~Gei~~I~G~nGsGKSTLlr~L~Gl~ 74 (382)
T TIGR03415 49 EGEICVLMGLSGSGKSSLLRAVNGLN 74 (382)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 44568899999999999999999754
No 447
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=90.48 E-value=0.2 Score=55.06 Aligned_cols=26 Identities=23% Similarity=0.364 Sum_probs=22.3
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+...+.|.||+|+|||+|.++|+..+
T Consensus 344 ~Ge~~~l~G~NGsGKSTLlk~l~G~~ 369 (635)
T PRK11147 344 RGDKIALIGPNGCGKTTLLKLMLGQL 369 (635)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34568899999999999999999754
No 448
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=90.48 E-value=0.21 Score=55.22 Aligned_cols=27 Identities=26% Similarity=0.413 Sum_probs=24.0
Q ss_pred CCCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 385 APFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 385 ~p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
.|...+.+.||+|||||+|++.|++..
T Consensus 477 ~~Ge~vaIvG~sGsGKSTLlklL~gl~ 503 (686)
T TIGR03797 477 EPGEFVAIVGPSGSGKSTLLRLLLGFE 503 (686)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 567789999999999999999998654
No 449
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=90.45 E-value=0.19 Score=53.39 Aligned_cols=26 Identities=15% Similarity=0.083 Sum_probs=22.1
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+..-+.|.||+|+|||+|.++|+..+
T Consensus 277 ~Ge~~~liG~NGsGKSTLl~~l~G~~ 302 (501)
T PRK10762 277 KGEILGVSGLMGAGRTELMKVLYGAL 302 (501)
T ss_pred CCcEEEEecCCCCCHHHHHHHHhCCC
Confidence 44567899999999999999999654
No 450
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=90.42 E-value=0.24 Score=49.33 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=19.8
Q ss_pred cEEEecCCCCcHHHHHHHHHHHh
Q 014938 389 NMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 389 ~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
-|-|.|+||+|||+|...+...+
T Consensus 106 ~v~l~G~pGsGKTTLl~~l~~~l 128 (290)
T PRK10463 106 VLNLVSSPGSGKTTLLTETLMRL 128 (290)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 45578999999999999998775
No 451
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=90.39 E-value=0.22 Score=54.62 Aligned_cols=26 Identities=23% Similarity=0.342 Sum_probs=22.5
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+...+.|.||+|+|||+|+++|+..+
T Consensus 41 ~Ge~~~lvG~nGsGKSTLl~~l~Gll 66 (623)
T PRK10261 41 RGETLAIVGESGSGKSVTALALMRLL 66 (623)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Confidence 34578899999999999999999764
No 452
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=90.36 E-value=0.46 Score=50.18 Aligned_cols=52 Identities=27% Similarity=0.407 Sum_probs=36.5
Q ss_pred CCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 355 KNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 355 ~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
..+.++||.......+...+..... ..-+||++|.+||||-++|++|-..+.
T Consensus 138 ~~~~~liG~S~am~~l~~~i~kvA~------s~a~VLI~GESGtGKElvAr~IH~~S~ 189 (464)
T COG2204 138 SLGGELVGESPAMQQLRRLIAKVAP------SDASVLITGESGTGKELVARAIHQASP 189 (464)
T ss_pred cccCCceecCHHHHHHHHHHHHHhC------CCCCEEEECCCCCcHHHHHHHHHhhCc
Confidence 3556677766665555544443332 235899999999999999999987654
No 453
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=90.34 E-value=0.27 Score=45.59 Aligned_cols=28 Identities=21% Similarity=0.335 Sum_probs=23.0
Q ss_pred CccEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
...++|+||+|.||+++.+.|-.....|
T Consensus 37 GECvvL~G~SG~GKStllr~LYaNY~~d 64 (235)
T COG4778 37 GECVVLHGPSGSGKSTLLRSLYANYLPD 64 (235)
T ss_pred ccEEEeeCCCCCcHHHHHHHHHhccCCC
Confidence 4579999999999999999987655444
No 454
>PLN03073 ABC transporter F family; Provisional
Probab=90.27 E-value=0.2 Score=55.98 Aligned_cols=26 Identities=35% Similarity=0.317 Sum_probs=22.4
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+...+.|.||.|+|||||.+.|+...
T Consensus 202 ~Ge~~gLvG~NGsGKSTLLr~l~g~~ 227 (718)
T PLN03073 202 FGRHYGLVGRNGTGKTTFLRYMAMHA 227 (718)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 45579999999999999999999643
No 455
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=90.27 E-value=0.26 Score=52.19 Aligned_cols=20 Identities=20% Similarity=0.423 Sum_probs=17.3
Q ss_pred CCccEEEecCCCCcHHHHHH
Q 014938 386 PFRNMLFYGPPGTGKTMVAR 405 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAk 405 (415)
+..-+.|+||+|||||||.+
T Consensus 31 ~GEiv~L~G~SGsGKSTLLr 50 (504)
T TIGR03238 31 SSSLLFLCGSSGDGKSEILA 50 (504)
T ss_pred CCCEEEEECCCCCCHHHHHh
Confidence 45678899999999999976
No 456
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=90.26 E-value=0.22 Score=53.70 Aligned_cols=28 Identities=21% Similarity=0.277 Sum_probs=23.9
Q ss_pred CCCccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 385 APFRNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 385 ~p~r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
.+...+.+.||+|+|||++++.|++...
T Consensus 366 ~~G~~~aivG~sGsGKSTl~~ll~g~~~ 393 (555)
T TIGR01194 366 AQGDIVFIVGENGCGKSTLAKLFCGLYI 393 (555)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4566899999999999999999997554
No 457
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=90.23 E-value=0.24 Score=54.96 Aligned_cols=28 Identities=18% Similarity=0.174 Sum_probs=24.3
Q ss_pred CCCccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 385 APFRNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 385 ~p~r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
.|...+.+.||+|+|||+|++.|++...
T Consensus 498 ~~G~~vaIvG~SGsGKSTLlklL~gl~~ 525 (708)
T TIGR01193 498 KMNSKTTIVGMSGSGKSTLAKLLVGFFQ 525 (708)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 5677899999999999999999987543
No 458
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=90.14 E-value=0.26 Score=54.77 Aligned_cols=28 Identities=29% Similarity=0.409 Sum_probs=24.7
Q ss_pred CCCccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 385 APFRNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 385 ~p~r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
.|...+.+.||+|+|||++++.|++...
T Consensus 505 ~~Ge~vaIvG~SGsGKSTLl~lL~gl~~ 532 (711)
T TIGR00958 505 HPGEVVALVGPSGSGKSTVAALLQNLYQ 532 (711)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 5677899999999999999999997654
No 459
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=90.07 E-value=0.21 Score=52.85 Aligned_cols=25 Identities=28% Similarity=0.457 Sum_probs=21.9
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHH
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARK 410 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~ 410 (415)
+...+.|.||+|+|||+|.++|+..
T Consensus 285 ~Ge~~~i~G~NGsGKSTLl~~l~G~ 309 (490)
T PRK10938 285 PGEHWQIVGPNGAGKSTLLSLITGD 309 (490)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCC
Confidence 4567889999999999999999974
No 460
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=90.06 E-value=0.31 Score=46.37 Aligned_cols=27 Identities=30% Similarity=0.588 Sum_probs=23.2
Q ss_pred CCCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 385 APFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 385 ~p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
.|+..|.+.|+||+|||+|..+|...+
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~ 63 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNY 63 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 567788999999999999999888653
No 461
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=90.00 E-value=0.2 Score=53.24 Aligned_cols=27 Identities=11% Similarity=0.207 Sum_probs=23.0
Q ss_pred CCCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 385 APFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 385 ~p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
.+...+.|.||.|+|||+|.+.|+..+
T Consensus 277 ~~Ge~~~iiG~NGsGKSTLlk~l~G~~ 303 (501)
T PRK11288 277 RAGEIVGLFGLVGAGRSELMKLLYGAT 303 (501)
T ss_pred eCCcEEEEEcCCCCCHHHHHHHHcCCC
Confidence 345678899999999999999999654
No 462
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=89.96 E-value=0.25 Score=52.77 Aligned_cols=26 Identities=27% Similarity=0.252 Sum_probs=22.1
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+..-+.|.||+|+|||+|.++|+..+
T Consensus 309 ~Ge~~~l~G~NGsGKSTLl~~l~Gl~ 334 (520)
T TIGR03269 309 EGEIFGIVGTSGAGKTTLSKIIAGVL 334 (520)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34568899999999999999999653
No 463
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=89.92 E-value=0.25 Score=54.45 Aligned_cols=26 Identities=15% Similarity=0.231 Sum_probs=23.1
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
|...+.|.||+|||||+|.++|+...
T Consensus 33 ~Ge~~~l~G~nGsGKSTLl~~i~Gl~ 58 (648)
T PRK10535 33 AGEMVAIVGASGSGKSTLMNILGCLD 58 (648)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 56689999999999999999999664
No 464
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=89.88 E-value=0.25 Score=54.62 Aligned_cols=28 Identities=18% Similarity=0.254 Sum_probs=24.3
Q ss_pred CCCccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 385 APFRNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 385 ~p~r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
.|...+.+.||+|+|||+|++.|++...
T Consensus 489 ~~G~~iaIvG~sGsGKSTLlklL~gl~~ 516 (694)
T TIGR03375 489 RPGEKVAIIGRIGSGKSTLLKLLLGLYQ 516 (694)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5677899999999999999999986543
No 465
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=89.88 E-value=0.26 Score=54.61 Aligned_cols=28 Identities=25% Similarity=0.433 Sum_probs=24.4
Q ss_pred CCCccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 385 APFRNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 385 ~p~r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
.|...+.+.||+|+|||+|++.|++...
T Consensus 481 ~~G~~vaivG~sGsGKSTL~~ll~g~~~ 508 (694)
T TIGR01846 481 KPGEFIGIVGPSGSGKSTLTKLLQRLYT 508 (694)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4667899999999999999999997653
No 466
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=89.88 E-value=0.22 Score=53.64 Aligned_cols=26 Identities=31% Similarity=0.436 Sum_probs=22.0
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+..-+.|.||+|+|||+|.++|+..+
T Consensus 347 ~Ge~~~l~G~NGsGKSTLl~~l~G~~ 372 (552)
T TIGR03719 347 PGGIVGVIGPNGAGKSTLFRMITGQE 372 (552)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 34568899999999999999998653
No 467
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=89.85 E-value=0.25 Score=54.73 Aligned_cols=27 Identities=26% Similarity=0.438 Sum_probs=24.0
Q ss_pred CCCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 385 APFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 385 ~p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
.|...+.+.||+|+|||+|++.|++..
T Consensus 503 ~~Ge~vaIvG~sGsGKSTLlklL~gl~ 529 (710)
T TIGR03796 503 QPGQRVALVGGSGSGKSTIAKLVAGLY 529 (710)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 567789999999999999999999754
No 468
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=89.67 E-value=0.26 Score=43.73 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=20.1
Q ss_pred ccEEEecCCCCcHHHHHHHHHHH
Q 014938 388 RNMLFYGPPGTGKTMVAREIARK 410 (415)
Q Consensus 388 r~vLl~GPPGTGKT~lAkaLA~~ 410 (415)
..|+|.|+||+|||+|..+|...
T Consensus 103 ~~v~~~G~~nvGKStliN~l~~~ 125 (157)
T cd01858 103 ISVGFIGYPNVGKSSIINTLRSK 125 (157)
T ss_pred eEEEEEeCCCCChHHHHHHHhcC
Confidence 46889999999999999999753
No 469
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=89.63 E-value=0.29 Score=51.20 Aligned_cols=22 Identities=27% Similarity=0.356 Sum_probs=19.2
Q ss_pred EEEecCCCCcHHHHHHHHHHHh
Q 014938 390 MLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 390 vLl~GPPGTGKT~lAkaLA~~l 411 (415)
|-+.||+|+|||+|++.|...+
T Consensus 215 IGIsG~qGSGKSTLa~~L~~lL 236 (460)
T PLN03046 215 IGFSAPQGCGKTTLVFALDYLF 236 (460)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4478999999999999998765
No 470
>PLN03073 ABC transporter F family; Provisional
Probab=89.59 E-value=0.26 Score=54.99 Aligned_cols=26 Identities=23% Similarity=0.387 Sum_probs=22.3
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+..-+.|.||+|+|||+|.+.|+..+
T Consensus 534 ~Ge~i~LvG~NGsGKSTLLk~L~Gll 559 (718)
T PLN03073 534 LDSRIAMVGPNGIGKSTILKLISGEL 559 (718)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 44568899999999999999999654
No 471
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=89.57 E-value=0.27 Score=53.38 Aligned_cols=27 Identities=26% Similarity=0.401 Sum_probs=23.6
Q ss_pred CCCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 385 APFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 385 ~p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
.+...+.+.||+|+|||+|++.|++..
T Consensus 359 ~~G~~~~ivG~sGsGKSTL~~ll~g~~ 385 (585)
T TIGR01192 359 KAGQTVAIVGPTGAGKTTLINLLQRVY 385 (585)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHccCC
Confidence 456789999999999999999998654
No 472
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=89.50 E-value=0.29 Score=53.05 Aligned_cols=28 Identities=18% Similarity=0.188 Sum_probs=24.3
Q ss_pred CCCccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 385 APFRNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 385 ~p~r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
.|...+.+.||+|||||+|.+.|++...
T Consensus 365 ~~Ge~iaIvG~SGsGKSTLl~lL~gl~~ 392 (592)
T PRK10790 365 PSRGFVALVGHTGSGKSTLASLLMGYYP 392 (592)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 5667899999999999999999987553
No 473
>PRK15115 response regulator GlrR; Provisional
Probab=89.47 E-value=0.5 Score=49.07 Aligned_cols=25 Identities=36% Similarity=0.553 Sum_probs=22.3
Q ss_pred ccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 388 RNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 388 r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
.+|+++|++|||||++|+++-..++
T Consensus 158 ~~vli~Ge~GtGk~~lA~~ih~~s~ 182 (444)
T PRK15115 158 VSVLINGQSGTGKEILAQAIHNASP 182 (444)
T ss_pred CeEEEEcCCcchHHHHHHHHHHhcC
Confidence 4799999999999999999987654
No 474
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=89.43 E-value=0.29 Score=52.42 Aligned_cols=26 Identities=23% Similarity=0.368 Sum_probs=21.9
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+..-+.|.||+|+|||+|.++|+..+
T Consensus 311 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 336 (529)
T PRK15134 311 PGETLGLVGESGSGKSTTGLALLRLI 336 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcC
Confidence 34568899999999999999999653
No 475
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=89.39 E-value=0.19 Score=54.68 Aligned_cols=22 Identities=45% Similarity=0.712 Sum_probs=16.8
Q ss_pred cEEEecCCCCcHHHHHHHHHHH
Q 014938 389 NMLFYGPPGTGKTMVAREIARK 410 (415)
Q Consensus 389 ~vLl~GPPGTGKT~lAkaLA~~ 410 (415)
--|+-||||||||...-.|-.+
T Consensus 427 lsLIQGPPGTGKTvtsa~IVyh 448 (935)
T KOG1802|consen 427 LSLIQGPPGTGKTVTSATIVYH 448 (935)
T ss_pred ceeeecCCCCCceehhHHHHHH
Confidence 4578999999999876655443
No 476
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=89.32 E-value=0.32 Score=42.50 Aligned_cols=21 Identities=19% Similarity=0.384 Sum_probs=19.0
Q ss_pred cEEEecCCCCcHHHHHHHHHH
Q 014938 389 NMLFYGPPGTGKTMVAREIAR 409 (415)
Q Consensus 389 ~vLl~GPPGTGKT~lAkaLA~ 409 (415)
.++|.|+||+|||++..+|..
T Consensus 85 ~~~~~G~~~vGKstlin~l~~ 105 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVG 105 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 688999999999999998864
No 477
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=89.32 E-value=0.28 Score=52.74 Aligned_cols=26 Identities=23% Similarity=0.222 Sum_probs=22.4
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+...+.|.||+|+|||+|.++|+..+
T Consensus 49 ~GEivgIiGpNGSGKSTLLkiLaGLl 74 (549)
T PRK13545 49 EGEIVGIIGLNGSGKSTLSNLIAGVT 74 (549)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 45578899999999999999999654
No 478
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=89.30 E-value=0.28 Score=52.89 Aligned_cols=26 Identities=27% Similarity=0.422 Sum_probs=22.2
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+..-+.|.||+|+|||+|.+.|+..+
T Consensus 349 ~Ge~~~l~G~NGsGKSTLl~~i~G~~ 374 (556)
T PRK11819 349 PGGIVGIIGPNGAGKSTLFKMITGQE 374 (556)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44578899999999999999999654
No 479
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=89.28 E-value=0.32 Score=47.72 Aligned_cols=27 Identities=22% Similarity=0.249 Sum_probs=22.5
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
....+-|.|.+|||||++++.|.+...
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~~ 64 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLEE 64 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCcC
Confidence 345788999999999999999986543
No 480
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=89.19 E-value=0.33 Score=52.37 Aligned_cols=29 Identities=24% Similarity=0.376 Sum_probs=24.5
Q ss_pred CCCccEEEecCCCCcHHHHHHHHHHHhCC
Q 014938 385 APFRNMLFYGPPGTGKTMVAREIARKSVW 413 (415)
Q Consensus 385 ~p~r~vLl~GPPGTGKT~lAkaLA~~lg~ 413 (415)
.|...+-+.||+|+|||++++.|.+....
T Consensus 353 ~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~ 381 (567)
T COG1132 353 EPGEKVAIVGPSGSGKSTLIKLLLRLYDP 381 (567)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccCCC
Confidence 45667889999999999999999976654
No 481
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=89.11 E-value=0.33 Score=54.42 Aligned_cols=22 Identities=41% Similarity=0.552 Sum_probs=18.1
Q ss_pred CccEEEecCCCCcHHHHHHHHH
Q 014938 387 FRNMLFYGPPGTGKTMVAREIA 408 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA 408 (415)
.+-+++|||||||||+||..++
T Consensus 60 GsiteI~G~~GsGKTtLal~~~ 81 (790)
T PRK09519 60 GRVIEIYGPESSGKTTVALHAV 81 (790)
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4567799999999999996544
No 482
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=89.09 E-value=0.25 Score=54.62 Aligned_cols=26 Identities=46% Similarity=0.754 Sum_probs=23.4
Q ss_pred ccEEEecCCCCcHHHHHHHHHHHhCC
Q 014938 388 RNMLFYGPPGTGKTMVAREIARKSVW 413 (415)
Q Consensus 388 r~vLl~GPPGTGKT~lAkaLA~~lg~ 413 (415)
..++|.|.||+|||++++.|+..+++
T Consensus 216 ~~~~~vglp~~GKStia~~L~~~l~~ 241 (664)
T PTZ00322 216 LIVIMVGLPGRGKTYVARQIQRYFQW 241 (664)
T ss_pred eeEEecccCCCChhHHHHHHHHHHHh
Confidence 46889999999999999999999854
No 483
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=89.00 E-value=0.34 Score=47.02 Aligned_cols=26 Identities=27% Similarity=0.447 Sum_probs=23.0
Q ss_pred CCCccEEEecCCCCcHHHHHHHHHHH
Q 014938 385 APFRNMLFYGPPGTGKTMVAREIARK 410 (415)
Q Consensus 385 ~p~r~vLl~GPPGTGKT~lAkaLA~~ 410 (415)
.|..+-.++||.|.|||+|.+.++.+
T Consensus 55 ~~ge~W~I~G~NGsGKTTLL~ll~~~ 80 (257)
T COG1119 55 NPGEHWAIVGPNGAGKTTLLSLLTGE 80 (257)
T ss_pred cCCCcEEEECCCCCCHHHHHHHHhcc
Confidence 46779999999999999999998854
No 484
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=88.98 E-value=0.31 Score=51.84 Aligned_cols=26 Identities=15% Similarity=0.077 Sum_probs=22.1
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+..-+.|.||+|+|||+|.++|+..+
T Consensus 287 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 312 (506)
T PRK13549 287 RGEILGIAGLVGAGRTELVQCLFGAY 312 (506)
T ss_pred CCcEEEEeCCCCCCHHHHHHHHhCCC
Confidence 34578899999999999999999653
No 485
>PTZ00491 major vault protein; Provisional
Probab=88.98 E-value=47 Score=37.80 Aligned_cols=63 Identities=22% Similarity=0.293 Sum_probs=28.3
Q ss_pred HHHHHHhcCcChHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH----HHHHH-HHHHHHHHHHHHHHH
Q 014938 81 KALREFNSSRHAREAFDIM-RKQEQTRLAELDVEKVHYEAIQSQVDVERQR----KLAEE-HRNLVQQKAQARAQG 150 (415)
Q Consensus 81 ka~r~l~~s~~a~~~~~~~-~~qe~t~q~e~~~~~~e~~~~~~~~~~~~~~----~~~ee-~r~~~~~~~~~~~~~ 150 (415)
+-...|.+|= +-|+|++ +.||.+-+++.+. ..+.+...+++++ ++.|+ |+++++.|++-..-.
T Consensus 644 ~tr~~LqkSV--qlAiEItt~sqEa~A~h~a~~-----~eQea~g~Lerqk~~d~~~aE~~r~~llel~a~s~ave 712 (850)
T PTZ00491 644 RTRDSLQKSV--QLAIEITTKSQEAAARHQAEL-----LEQEARGRLERQKMHDKAKAEEQRTKLLELQAESAAVE 712 (850)
T ss_pred HHHHHHHHHH--HHhhhhhchhHHHHHHHHHHH-----HHHHhhchhHHHhhhhHHHHHHHHHHHHHHHhHHHHHh
Confidence 3334444442 3354443 4555555554222 2222333333333 33444 555667777655443
No 486
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=88.97 E-value=0.31 Score=48.20 Aligned_cols=25 Identities=16% Similarity=0.349 Sum_probs=21.6
Q ss_pred ccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 388 RNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 388 r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
+.++|.||||+|||+|...|.....
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~ 186 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLD 186 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhh
Confidence 5789999999999999999886543
No 487
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=88.94 E-value=0.28 Score=52.36 Aligned_cols=26 Identities=19% Similarity=0.165 Sum_probs=22.0
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+...+.|.||+|+|||+|.+.|+..+
T Consensus 288 ~Ge~~~l~G~NGsGKSTLl~~i~Gl~ 313 (510)
T PRK15439 288 AGEILGLAGVVGAGRTELAETLYGLR 313 (510)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcCCC
Confidence 44568899999999999999999643
No 488
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=88.92 E-value=0.33 Score=53.19 Aligned_cols=26 Identities=27% Similarity=0.496 Sum_probs=22.1
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+..-+.|.||+|+|||+|.++|+..+
T Consensus 349 ~Ge~~~lvG~nGsGKSTLlk~i~Gl~ 374 (623)
T PRK10261 349 PGETLSLVGESGSGKSTTGRALLRLV 374 (623)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 34567899999999999999999654
No 489
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=88.89 E-value=0.39 Score=49.96 Aligned_cols=26 Identities=27% Similarity=0.263 Sum_probs=21.4
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
|..-+++.|+||+|||+|+..+|..+
T Consensus 193 ~g~liviag~pg~GKT~~al~ia~~~ 218 (421)
T TIGR03600 193 KGDLIVIGARPSMGKTTLALNIAENV 218 (421)
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHHH
Confidence 44567889999999999999998543
No 490
>PRK00098 GTPase RsgA; Reviewed
Probab=88.86 E-value=0.3 Score=48.62 Aligned_cols=24 Identities=21% Similarity=0.407 Sum_probs=20.7
Q ss_pred ccEEEecCCCCcHHHHHHHHHHHh
Q 014938 388 RNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 388 r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
.-++|.||||+|||+|..+|....
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~~ 188 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPDL 188 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCCc
Confidence 468899999999999999997654
No 491
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=88.82 E-value=0.27 Score=52.03 Aligned_cols=26 Identities=12% Similarity=0.009 Sum_probs=22.1
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+..-+.|.||+|+|||+|.++|+...
T Consensus 273 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 298 (491)
T PRK10982 273 KGEILGIAGLVGAKRTDIVETLFGIR 298 (491)
T ss_pred CCcEEEEecCCCCCHHHHHHHHcCCC
Confidence 34578899999999999999998654
No 492
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=88.82 E-value=0.37 Score=45.22 Aligned_cols=22 Identities=23% Similarity=0.502 Sum_probs=19.1
Q ss_pred cEEEecCCCCcHHHHHHHHHHH
Q 014938 389 NMLFYGPPGTGKTMVAREIARK 410 (415)
Q Consensus 389 ~vLl~GPPGTGKT~lAkaLA~~ 410 (415)
-++|.|+-|||||++.+.|+..
T Consensus 54 ~lvl~G~QG~GKStf~~~L~~~ 75 (198)
T PF05272_consen 54 VLVLVGKQGIGKSTFFRKLGPE 75 (198)
T ss_pred eeeEecCCcccHHHHHHHHhHH
Confidence 4668999999999999999755
No 493
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=88.67 E-value=0.49 Score=54.50 Aligned_cols=40 Identities=18% Similarity=0.238 Sum_probs=26.8
Q ss_pred ccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHH
Q 014938 360 IILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIAR 409 (415)
Q Consensus 360 vv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~ 409 (415)
+.+.++....+..++.. ..-+++.|+||||||++.+++..
T Consensus 345 ~~Ls~eQr~Av~~il~s----------~~v~vv~G~AGTGKTT~l~~~~~ 384 (988)
T PRK13889 345 LVLSGEQADALAHVTDG----------RDLGVVVGYAGTGKSAMLGVARE 384 (988)
T ss_pred CCCCHHHHHHHHHHhcC----------CCeEEEEeCCCCCHHHHHHHHHH
Confidence 34556666666544321 12567999999999999887654
No 494
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=88.60 E-value=0.87 Score=45.22 Aligned_cols=26 Identities=19% Similarity=0.341 Sum_probs=22.5
Q ss_pred CccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
..-++|||+.|+|||++...|...+|
T Consensus 76 ~~~~~l~G~g~nGKStl~~~l~~l~G 101 (304)
T TIGR01613 76 QKLFFLYGNGGNGKSTFQNLLSNLLG 101 (304)
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHhC
Confidence 34577899999999999999988776
No 495
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=88.60 E-value=0.42 Score=51.08 Aligned_cols=30 Identities=20% Similarity=0.158 Sum_probs=25.6
Q ss_pred CCCccEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 385 APFRNMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 385 ~p~r~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
.+..+|-+.|++|||||++...|++.+..+
T Consensus 362 ~~GEkvAIlG~SGsGKSTllqLl~~~~~~~ 391 (573)
T COG4987 362 AQGEKVAILGRSGSGKSTLLQLLAGAWDPQ 391 (573)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHhccCCC
Confidence 567799999999999999999999765543
No 496
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=88.54 E-value=0.37 Score=49.31 Aligned_cols=28 Identities=25% Similarity=0.279 Sum_probs=23.9
Q ss_pred CccEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
...+++.||+|||||.++..|+++.+.+
T Consensus 157 Gqr~~I~G~~G~GKT~L~~~Iak~~~~d 184 (369)
T cd01134 157 GGTAAIPGPFGCGKTVIQQSLSKYSNSD 184 (369)
T ss_pred CCEEEEECCCCCChHHHHHHHHhCCCCC
Confidence 3478999999999999999999876643
No 497
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=88.44 E-value=0.42 Score=49.84 Aligned_cols=25 Identities=32% Similarity=0.454 Sum_probs=20.5
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHH
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARK 410 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~ 410 (415)
|..-+++.|+||+|||+|+..++..
T Consensus 194 ~G~l~vi~g~pg~GKT~~~l~~a~~ 218 (434)
T TIGR00665 194 PSDLIILAARPSMGKTAFALNIAEN 218 (434)
T ss_pred CCeEEEEEeCCCCChHHHHHHHHHH
Confidence 3446778999999999999988765
No 498
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=88.25 E-value=0.35 Score=50.92 Aligned_cols=27 Identities=19% Similarity=0.320 Sum_probs=22.7
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
+..-+.|+||+|||||+|.+.|+....
T Consensus 164 ~Gqri~I~G~SGsGKTTLL~~Ia~l~~ 190 (450)
T PRK06002 164 AGQRIGIFAGSGVGKSTLLAMLARADA 190 (450)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 345789999999999999999986543
No 499
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=88.25 E-value=0.83 Score=48.53 Aligned_cols=53 Identities=30% Similarity=0.381 Sum_probs=37.3
Q ss_pred cCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 354 ~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
...+.++||.......+...+.-... ..-+||+.|-+||||-.+|++|=+.++
T Consensus 219 ~~~~~~iIG~S~am~~ll~~i~~VA~------Sd~tVLi~GETGtGKElvAraIH~~S~ 271 (550)
T COG3604 219 VLEVGGIIGRSPAMRQLLKEIEVVAK------SDSTVLIRGETGTGKELVARAIHQLSP 271 (550)
T ss_pred hcccccceecCHHHHHHHHHHHHHhc------CCCeEEEecCCCccHHHHHHHHHhhCc
Confidence 55777888876665544333333221 134899999999999999999977654
No 500
>PLN02772 guanylate kinase
Probab=88.14 E-value=0.41 Score=49.58 Aligned_cols=25 Identities=20% Similarity=0.436 Sum_probs=0.0
Q ss_pred CccEEEecCCCCcHHHHHHHHHHHh
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
.+-++|.||+|+||++|.+.|....
T Consensus 135 ~k~iVlsGPSGvGKsTL~~~L~~~~ 159 (398)
T PLN02772 135 EKPIVISGPSGVGKGTLISMLMKEF 159 (398)
T ss_pred CcEEEEECCCCCCHHHHHHHHhhhc
Done!