Query 014938
Match_columns 415
No_of_seqs 340 out of 1999
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 03:48:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014938.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014938hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_L 26S protease subunit RP 99.7 1.8E-17 6.1E-22 170.6 5.4 220 148-414 11-242 (437)
2 4b4t_J 26S protease regulatory 99.4 3.6E-13 1.2E-17 137.0 7.3 64 351-414 141-209 (405)
3 4b4t_I 26S protease regulatory 99.3 4E-13 1.4E-17 137.5 2.7 64 351-414 175-243 (437)
4 4b4t_K 26S protease regulatory 99.3 2.2E-12 7.4E-17 132.5 4.6 64 351-414 165-233 (428)
5 4b4t_M 26S protease regulatory 99.2 7.2E-12 2.5E-16 128.8 7.2 64 351-414 174-242 (434)
6 4b4t_H 26S protease regulatory 99.2 1.8E-11 6.3E-16 126.2 7.2 64 351-414 202-270 (467)
7 1qvr_A CLPB protein; coiled co 99.1 9.2E-10 3.1E-14 121.9 18.7 205 155-411 404-612 (854)
8 2qz4_A Paraplegin; AAA+, SPG7, 99.0 9E-10 3.1E-14 103.5 7.6 61 354-414 2-66 (262)
9 3eie_A Vacuolar protein sortin 98.9 1E-09 3.5E-14 107.7 7.0 64 351-414 11-78 (322)
10 1xwi_A SKD1 protein; VPS4B, AA 98.9 1.5E-09 5.3E-14 106.9 7.6 60 352-411 6-69 (322)
11 3cf0_A Transitional endoplasmi 98.9 1.8E-09 6.3E-14 105.0 7.4 64 351-414 8-76 (301)
12 2r62_A Cell division protease 98.9 2E-09 6.9E-14 102.0 6.6 63 352-414 5-71 (268)
13 2qp9_X Vacuolar protein sortin 98.9 1.9E-09 6.6E-14 107.6 6.4 63 352-414 45-111 (355)
14 1lv7_A FTSH; alpha/beta domain 98.8 3.8E-09 1.3E-13 99.8 7.6 62 353-414 7-72 (257)
15 3cf2_A TER ATPase, transitiona 98.8 2.4E-09 8.2E-14 117.5 6.1 63 352-414 198-265 (806)
16 2c9o_A RUVB-like 1; hexameric 98.8 4.9E-09 1.7E-13 108.0 7.0 58 352-412 31-88 (456)
17 3h4m_A Proteasome-activating n 98.8 6.7E-09 2.3E-13 99.1 7.2 63 352-414 11-78 (285)
18 3b9p_A CG5977-PA, isoform A; A 98.8 6.8E-09 2.3E-13 99.8 6.9 63 352-414 15-81 (297)
19 2zan_A Vacuolar protein sortin 98.8 6.5E-09 2.2E-13 106.9 6.8 60 352-411 128-191 (444)
20 2x8a_A Nuclear valosin-contain 98.7 7.9E-09 2.7E-13 99.6 5.3 61 353-413 5-70 (274)
21 3cf2_A TER ATPase, transitiona 98.7 6.1E-09 2.1E-13 114.3 4.9 64 351-414 470-538 (806)
22 1ixz_A ATP-dependent metallopr 98.7 2.3E-08 8E-13 94.1 8.0 63 351-413 9-75 (254)
23 3d8b_A Fidgetin-like protein 1 98.7 1.4E-08 4.9E-13 101.2 6.8 63 352-414 78-144 (357)
24 2ce7_A Cell division protein F 98.7 2E-08 6.7E-13 104.4 7.8 63 352-414 10-76 (476)
25 3vfd_A Spastin; ATPase, microt 98.7 1.7E-08 5.9E-13 101.5 7.1 63 352-414 109-175 (389)
26 3t15_A Ribulose bisphosphate c 98.7 2.1E-08 7.3E-13 97.3 6.2 31 384-414 33-63 (293)
27 3uk6_A RUVB-like 2; hexameric 98.6 3.3E-08 1.1E-12 97.6 6.9 59 352-413 38-96 (368)
28 2dhr_A FTSH; AAA+ protein, hex 98.6 5.8E-08 2E-12 101.5 8.3 62 353-414 26-91 (499)
29 1iy2_A ATP-dependent metallopr 98.6 7.1E-08 2.4E-12 92.3 8.0 62 352-413 34-99 (278)
30 3pfi_A Holliday junction ATP-d 98.6 7.6E-08 2.6E-12 94.1 7.8 58 354-414 25-82 (338)
31 3syl_A Protein CBBX; photosynt 98.6 5.9E-08 2E-12 93.5 6.7 54 359-412 32-92 (309)
32 3hu3_A Transitional endoplasmi 98.5 1.1E-07 3.7E-12 99.2 6.9 62 353-414 199-265 (489)
33 3hws_A ATP-dependent CLP prote 98.5 2.4E-07 8.2E-12 92.1 8.9 55 360-414 17-78 (363)
34 1iqp_A RFCS; clamp loader, ext 98.5 1.1E-07 3.9E-12 91.6 6.0 50 354-411 21-70 (327)
35 1sxj_A Activator 1 95 kDa subu 98.5 1.5E-07 5E-12 98.5 7.1 61 354-414 35-104 (516)
36 1hqc_A RUVB; extended AAA-ATPa 98.5 2E-07 6.7E-12 90.3 6.9 58 354-414 8-65 (324)
37 1in4_A RUVB, holliday junction 98.4 2.7E-07 9.2E-12 91.0 7.8 59 353-414 20-78 (334)
38 1ofh_A ATP-dependent HSL prote 98.4 2.7E-07 9.1E-12 88.4 7.3 56 359-414 16-77 (310)
39 1um8_A ATP-dependent CLP prote 98.4 2.1E-07 7E-12 92.9 6.7 56 359-414 22-99 (376)
40 1g8p_A Magnesium-chelatase 38 98.4 1.2E-07 4.3E-12 92.6 4.9 53 352-412 18-70 (350)
41 3u61_B DNA polymerase accessor 98.4 2.1E-07 7.1E-12 90.6 6.3 53 354-413 22-74 (324)
42 1g41_A Heat shock protein HSLU 98.4 3.4E-07 1.2E-11 94.3 7.7 56 359-414 16-77 (444)
43 2r44_A Uncharacterized protein 98.4 2.1E-07 7.2E-12 90.9 5.9 49 356-414 25-73 (331)
44 3ec2_A DNA replication protein 98.4 3.6E-07 1.2E-11 81.4 6.8 56 354-411 6-62 (180)
45 1jbk_A CLPB protein; beta barr 98.4 2.9E-07 1E-11 80.6 6.1 50 354-411 18-67 (195)
46 3bos_A Putative DNA replicatio 98.4 2.4E-07 8.3E-12 84.8 5.7 55 353-412 23-77 (242)
47 3pvs_A Replication-associated 98.4 2.1E-07 7.1E-12 96.0 5.6 54 353-414 21-77 (447)
48 2chg_A Replication factor C sm 98.4 3.6E-07 1.2E-11 82.0 6.1 50 354-411 13-62 (226)
49 2p65_A Hypothetical protein PF 98.4 2.5E-07 8.6E-12 81.2 4.5 50 354-411 18-67 (187)
50 2w58_A DNAI, primosome compone 98.3 6.6E-07 2.3E-11 80.9 7.1 57 354-411 21-78 (202)
51 1sxj_D Activator 1 41 kDa subu 98.3 2E-07 6.8E-12 91.1 3.6 52 353-412 32-83 (353)
52 1d2n_A N-ethylmaleimide-sensit 98.3 6.9E-07 2.4E-11 84.9 6.9 31 384-414 61-91 (272)
53 1sxj_C Activator 1 40 kDa subu 98.3 4.9E-07 1.7E-11 88.9 6.0 52 353-412 20-71 (340)
54 1l8q_A Chromosomal replication 98.3 8.4E-07 2.9E-11 86.5 7.3 56 352-411 5-61 (324)
55 1ypw_A Transitional endoplasmi 98.3 4.5E-07 1.6E-11 99.9 5.5 63 352-414 198-265 (806)
56 1njg_A DNA polymerase III subu 98.3 9.5E-07 3.3E-11 79.9 6.7 53 354-413 19-71 (250)
57 2chq_A Replication factor C sm 98.3 4.8E-07 1.6E-11 86.8 4.6 51 353-411 12-62 (319)
58 3n70_A Transport activator; si 98.3 1E-06 3.4E-11 76.3 5.9 25 387-411 24-48 (145)
59 4fcw_A Chaperone protein CLPB; 98.2 1.2E-06 3.9E-11 84.3 6.6 54 359-412 18-72 (311)
60 3pxg_A Negative regulator of g 98.2 9.7E-07 3.3E-11 91.3 6.1 50 354-411 176-225 (468)
61 1jr3_A DNA polymerase III subu 98.2 2.1E-06 7.2E-11 84.4 7.8 53 354-413 12-64 (373)
62 3m6a_A ATP-dependent protease 98.2 1.7E-06 6E-11 91.1 7.5 56 357-414 80-135 (543)
63 2qgz_A Helicase loader, putati 98.2 1.5E-06 5.2E-11 85.0 6.5 57 354-412 120-177 (308)
64 1ypw_A Transitional endoplasmi 98.2 6.5E-07 2.2E-11 98.6 4.2 64 351-414 470-538 (806)
65 3co5_A Putative two-component 98.2 5.1E-07 1.7E-11 78.1 2.6 47 360-412 6-52 (143)
66 1sxj_B Activator 1 37 kDa subu 98.2 1.3E-06 4.5E-11 83.9 5.6 50 354-411 17-66 (323)
67 1sxj_E Activator 1 40 kDa subu 98.1 1.5E-06 5.1E-11 85.2 4.2 52 353-411 9-60 (354)
68 3pxi_A Negative regulator of g 98.1 2.7E-06 9.1E-11 92.8 6.1 50 354-411 176-225 (758)
69 2z4s_A Chromosomal replication 98.1 4.2E-06 1.4E-10 85.8 6.9 56 351-411 98-154 (440)
70 1u0j_A DNA replication protein 98.0 4E-06 1.4E-10 80.7 5.5 26 387-412 104-129 (267)
71 3nbx_X ATPase RAVA; AAA+ ATPas 98.0 3E-06 1E-10 88.5 4.9 43 360-412 24-66 (500)
72 2qby_B CDC6 homolog 3, cell di 98.0 6.1E-06 2.1E-10 81.4 6.8 50 358-411 20-69 (384)
73 1r6b_X CLPA protein; AAA+, N-t 98.0 4.8E-06 1.6E-10 90.7 6.3 56 358-413 458-514 (758)
74 3pxi_A Negative regulator of g 98.0 5.2E-06 1.8E-10 90.5 6.3 54 358-411 491-545 (758)
75 1tue_A Replication protein E1; 98.0 5.4E-06 1.8E-10 77.0 5.0 25 388-412 59-83 (212)
76 2v1u_A Cell division control p 97.9 6.6E-06 2.2E-10 80.7 5.5 52 356-411 17-68 (387)
77 1fnn_A CDC6P, cell division co 97.9 2.1E-05 7.2E-10 77.4 7.7 53 356-412 15-69 (389)
78 2qby_A CDC6 homolog 1, cell di 97.8 1.3E-05 4.6E-10 78.4 5.5 53 355-411 17-69 (386)
79 1qvr_A CLPB protein; coiled co 97.8 1.1E-05 3.9E-10 89.1 5.3 50 354-411 166-215 (854)
80 3te6_A Regulatory protein SIR3 97.8 1.4E-05 4.9E-10 78.8 5.2 27 385-411 43-69 (318)
81 1r6b_X CLPA protein; AAA+, N-t 97.8 1.4E-05 4.8E-10 86.9 5.4 50 354-411 182-231 (758)
82 3k1j_A LON protease, ATP-depen 97.7 1.9E-05 6.6E-10 84.0 5.0 51 353-413 36-86 (604)
83 2kjq_A DNAA-related protein; s 97.7 1.5E-05 5.2E-10 69.6 2.5 26 386-411 35-60 (149)
84 1gvn_B Zeta; postsegregational 97.4 0.00014 4.9E-09 70.2 5.4 26 386-411 32-57 (287)
85 3f9v_A Minichromosome maintena 97.3 2.9E-05 9.9E-10 82.7 -0.2 24 389-412 329-352 (595)
86 2p5t_B PEZT; postsegregational 97.3 0.00018 6.3E-09 67.7 5.3 29 385-413 30-58 (253)
87 3cmw_A Protein RECA, recombina 97.3 0.00017 5.8E-09 84.7 5.9 64 349-412 1011-1107(1706)
88 1w5s_A Origin recognition comp 97.3 0.00032 1.1E-08 69.5 6.6 54 356-411 20-76 (412)
89 2vhj_A Ntpase P4, P4; non- hyd 96.9 0.00037 1.2E-08 68.9 3.1 26 387-412 123-148 (331)
90 3nwj_A ATSK2; P loop, shikimat 96.8 0.00064 2.2E-08 64.6 3.6 28 387-414 48-75 (250)
91 3upu_A ATP-dependent DNA helic 96.8 0.0017 5.8E-08 66.5 7.0 52 352-411 18-69 (459)
92 1svm_A Large T antigen; AAA+ f 96.8 0.0011 3.6E-08 66.8 5.3 28 385-412 167-194 (377)
93 3cmu_A Protein RECA, recombina 96.3 0.0017 5.6E-08 77.4 3.8 27 385-411 1425-1451(2050)
94 4b3f_X DNA-binding protein smu 96.1 0.0057 1.9E-07 65.4 6.2 39 360-408 188-226 (646)
95 2f6r_A COA synthase, bifunctio 96.1 0.003 1E-07 60.6 3.3 27 387-414 75-101 (281)
96 3zvl_A Bifunctional polynucleo 96.0 0.0028 9.7E-08 64.2 3.1 27 387-413 258-284 (416)
97 3a8t_A Adenylate isopentenyltr 95.9 0.0033 1.1E-07 62.4 3.0 26 388-413 41-66 (339)
98 1htw_A HI0065; nucleotide-bind 95.9 0.0054 1.8E-07 54.0 3.9 26 386-411 32-57 (158)
99 3jvv_A Twitching mobility prot 95.9 0.01 3.4E-07 59.1 6.3 26 386-411 122-147 (356)
100 3hr8_A Protein RECA; alpha and 95.9 0.004 1.4E-07 62.1 3.4 25 387-411 61-85 (356)
101 2z43_A DNA repair and recombin 95.8 0.0053 1.8E-07 59.9 3.9 26 386-411 106-131 (324)
102 2zr9_A Protein RECA, recombina 95.7 0.005 1.7E-07 61.1 3.5 26 386-411 60-85 (349)
103 1cr0_A DNA primase/helicase; R 95.7 0.0056 1.9E-07 58.4 3.6 26 386-411 34-59 (296)
104 1p9r_A General secretion pathw 95.7 0.015 5E-07 59.2 6.8 51 354-413 143-193 (418)
105 1v5w_A DMC1, meiotic recombina 95.7 0.0073 2.5E-07 59.6 4.3 26 386-411 121-146 (343)
106 1u94_A RECA protein, recombina 95.6 0.0065 2.2E-07 60.5 3.7 26 386-411 62-87 (356)
107 4akg_A Glutathione S-transfera 95.6 0.015 5.1E-07 71.3 7.5 49 359-414 624-672 (2695)
108 2i1q_A DNA repair and recombin 95.6 0.0063 2.2E-07 59.0 3.4 26 386-411 97-122 (322)
109 2v9p_A Replication protein E1; 95.6 0.009 3.1E-07 58.3 4.5 27 385-411 124-150 (305)
110 3e1s_A Exodeoxyribonuclease V, 95.6 0.0062 2.1E-07 64.4 3.5 24 388-411 205-228 (574)
111 1rj9_A FTSY, signal recognitio 95.5 0.008 2.7E-07 58.5 4.0 26 386-411 101-126 (304)
112 2qmh_A HPR kinase/phosphorylas 95.5 0.0055 1.9E-07 56.5 2.6 25 387-411 34-58 (205)
113 3aez_A Pantothenate kinase; tr 95.5 0.017 5.7E-07 56.4 6.2 25 387-411 90-114 (312)
114 2axn_A 6-phosphofructo-2-kinas 95.5 0.0049 1.7E-07 64.4 2.4 26 387-412 35-60 (520)
115 1pzn_A RAD51, DNA repair and r 95.5 0.0078 2.7E-07 59.6 3.7 26 386-411 130-155 (349)
116 2px0_A Flagellar biosynthesis 95.3 0.0094 3.2E-07 57.7 3.5 26 386-411 104-129 (296)
117 1vma_A Cell division protein F 95.2 0.011 3.6E-07 57.8 3.7 26 386-411 103-128 (306)
118 2ged_A SR-beta, signal recogni 95.2 0.016 5.6E-07 50.7 4.6 25 386-410 47-71 (193)
119 1xp8_A RECA protein, recombina 95.2 0.01 3.4E-07 59.4 3.5 26 386-411 73-98 (366)
120 2v3c_C SRP54, signal recogniti 95.2 0.0092 3.1E-07 61.0 3.3 26 386-411 98-123 (432)
121 3b9q_A Chloroplast SRP recepto 95.2 0.011 3.9E-07 57.3 3.7 26 386-411 99-124 (302)
122 3lda_A DNA repair protein RAD5 95.2 0.012 4E-07 59.7 3.9 26 386-411 177-202 (400)
123 3tqc_A Pantothenate kinase; bi 95.1 0.011 3.8E-07 58.1 3.6 24 389-412 94-117 (321)
124 2gk6_A Regulator of nonsense t 95.1 0.01 3.5E-07 63.2 3.5 24 388-411 196-219 (624)
125 3e70_C DPA, signal recognition 95.1 0.012 4.1E-07 57.9 3.8 26 386-411 128-153 (328)
126 2ewv_A Twitching motility prot 95.0 0.013 4.5E-07 58.5 3.6 26 386-411 135-160 (372)
127 1bif_A 6-phosphofructo-2-kinas 95.0 0.0091 3.1E-07 61.3 2.5 26 387-412 39-64 (469)
128 3kl4_A SRP54, signal recogniti 94.9 0.013 4.5E-07 59.9 3.4 26 386-411 96-121 (433)
129 1lw7_A Transcriptional regulat 94.9 0.01 3.6E-07 58.7 2.6 27 387-413 170-196 (365)
130 1sq5_A Pantothenate kinase; P- 94.8 0.014 4.8E-07 56.5 3.3 25 388-412 81-105 (308)
131 1z6t_A APAF-1, apoptotic prote 94.8 0.026 9E-07 58.8 5.5 46 358-409 124-169 (591)
132 1x6v_B Bifunctional 3'-phospho 94.8 0.016 5.5E-07 62.0 3.9 28 387-414 52-82 (630)
133 2og2_A Putative signal recogni 94.8 0.017 5.7E-07 57.7 3.7 26 386-411 156-181 (359)
134 1w36_D RECD, exodeoxyribonucle 94.7 0.015 5.2E-07 61.8 3.5 24 388-411 165-188 (608)
135 3bh0_A DNAB-like replicative h 94.7 0.021 7.1E-07 55.5 4.0 27 385-411 66-92 (315)
136 2gza_A Type IV secretion syste 94.7 0.015 5.1E-07 57.8 3.0 27 386-412 174-200 (361)
137 1g8f_A Sulfate adenylyltransfe 94.6 0.018 6.2E-07 60.1 3.5 26 388-413 396-421 (511)
138 3dm5_A SRP54, signal recogniti 94.5 0.02 6.7E-07 58.8 3.6 26 386-411 99-124 (443)
139 2oap_1 GSPE-2, type II secreti 94.4 0.017 5.9E-07 60.2 3.0 26 387-412 260-285 (511)
140 1b0u_A Histidine permease; ABC 94.4 0.016 5.4E-07 55.0 2.4 26 386-411 31-56 (262)
141 2yhs_A FTSY, cell division pro 94.4 0.023 8E-07 59.1 3.8 26 386-411 292-317 (503)
142 2pt7_A CAG-ALFA; ATPase, prote 94.4 0.013 4.4E-07 57.6 1.8 26 387-412 171-196 (330)
143 1ny5_A Transcriptional regulat 94.4 0.057 1.9E-06 54.0 6.5 26 387-412 160-185 (387)
144 1sgw_A Putative ABC transporte 94.3 0.016 5.4E-07 53.5 2.2 25 387-411 35-59 (214)
145 1zu4_A FTSY; GTPase, signal re 94.3 0.025 8.5E-07 55.4 3.7 26 386-411 104-129 (320)
146 2r6a_A DNAB helicase, replicat 94.3 0.026 8.9E-07 57.6 4.0 26 386-411 202-227 (454)
147 1g6h_A High-affinity branched- 94.3 0.016 5.4E-07 54.8 2.2 25 387-411 33-57 (257)
148 3cmu_A Protein RECA, recombina 94.3 0.021 7.3E-07 68.1 3.7 26 385-410 1079-1104(2050)
149 2wjy_A Regulator of nonsense t 94.2 0.022 7.7E-07 62.5 3.5 24 388-411 372-395 (800)
150 2pze_A Cystic fibrosis transme 94.2 0.017 6E-07 53.5 2.2 26 386-411 33-58 (229)
151 3f8t_A Predicted ATPase involv 94.2 0.02 6.7E-07 59.4 2.7 47 360-410 215-262 (506)
152 2npi_A Protein CLP1; CLP1-PCF1 94.2 0.043 1.5E-06 56.4 5.3 27 385-411 136-162 (460)
153 1ji0_A ABC transporter; ATP bi 94.1 0.018 6.1E-07 53.9 2.2 25 387-411 32-56 (240)
154 4g1u_C Hemin import ATP-bindin 94.1 0.02 6.8E-07 54.5 2.5 26 386-411 36-61 (266)
155 3cr8_A Sulfate adenylyltranfer 94.1 0.017 5.7E-07 61.0 2.1 26 387-412 369-394 (552)
156 2ff7_A Alpha-hemolysin translo 94.1 0.018 6.2E-07 54.1 2.2 26 386-411 34-59 (247)
157 2ixe_A Antigen peptide transpo 94.1 0.019 6.6E-07 54.8 2.3 26 386-411 44-69 (271)
158 3fmo_B ATP-dependent RNA helic 94.1 0.085 2.9E-06 50.7 6.9 54 351-404 88-148 (300)
159 2olj_A Amino acid ABC transpor 94.1 0.02 6.8E-07 54.5 2.4 26 386-411 49-74 (263)
160 2fz4_A DNA repair protein RAD2 94.1 0.03 1E-06 52.0 3.5 25 388-412 109-133 (237)
161 1z47_A CYSA, putative ABC-tran 94.0 0.022 7.4E-07 56.8 2.7 25 387-411 41-65 (355)
162 2q6t_A DNAB replication FORK h 94.0 0.03 1E-06 57.0 3.8 26 386-411 199-224 (444)
163 2zu0_C Probable ATP-dependent 94.0 0.03 1E-06 53.3 3.5 25 386-410 45-69 (267)
164 3gfo_A Cobalt import ATP-bindi 94.0 0.019 6.6E-07 55.0 2.2 25 387-411 34-58 (275)
165 1v43_A Sugar-binding transport 94.0 0.024 8.1E-07 56.9 2.9 25 387-411 37-61 (372)
166 1vpl_A ABC transporter, ATP-bi 94.0 0.021 7.3E-07 54.0 2.4 26 386-411 40-65 (256)
167 2ihy_A ABC transporter, ATP-bi 93.9 0.021 7.1E-07 54.8 2.2 26 386-411 46-71 (279)
168 2yz2_A Putative ABC transporte 93.9 0.023 7.7E-07 54.0 2.3 26 386-411 32-57 (266)
169 2ghi_A Transport protein; mult 93.8 0.03 1E-06 53.1 3.0 26 386-411 45-70 (260)
170 2xzl_A ATP-dependent helicase 93.8 0.031 1.1E-06 61.4 3.5 22 389-410 377-398 (802)
171 1m8p_A Sulfate adenylyltransfe 93.6 0.034 1.2E-06 58.8 3.3 26 387-412 396-421 (573)
172 1ls1_A Signal recognition part 93.6 0.042 1.4E-06 53.0 3.6 25 387-411 98-122 (295)
173 2hf9_A Probable hydrogenase ni 93.6 0.041 1.4E-06 49.6 3.4 25 387-411 38-62 (226)
174 1tf7_A KAIC; homohexamer, hexa 93.5 0.039 1.3E-06 57.3 3.5 22 386-407 38-59 (525)
175 2j37_W Signal recognition part 93.4 0.041 1.4E-06 57.3 3.5 26 386-411 100-125 (504)
176 2xxa_A Signal recognition part 93.4 0.043 1.5E-06 56.0 3.7 27 385-411 98-124 (433)
177 3cmw_A Protein RECA, recombina 93.4 0.039 1.3E-06 65.0 3.7 27 385-411 730-756 (1706)
178 1tf7_A KAIC; homohexamer, hexa 93.4 0.041 1.4E-06 57.2 3.5 26 386-411 280-305 (525)
179 2qm8_A GTPase/ATPase; G protei 93.3 0.05 1.7E-06 53.5 3.8 26 386-411 54-79 (337)
180 2obl_A ESCN; ATPase, hydrolase 93.3 0.042 1.4E-06 54.4 3.2 27 387-413 71-97 (347)
181 3p32_A Probable GTPase RV1496/ 93.3 0.095 3.3E-06 51.6 5.8 25 387-411 79-103 (355)
182 3gd7_A Fusion complex of cysti 93.2 0.044 1.5E-06 55.3 3.3 25 386-410 46-70 (390)
183 2dpy_A FLII, flagellum-specifi 93.2 0.045 1.5E-06 55.9 3.4 27 387-413 157-183 (438)
184 4a1f_A DNAB helicase, replicat 93.2 0.053 1.8E-06 53.6 3.8 27 385-411 44-70 (338)
185 2a5y_B CED-4; apoptosis; HET: 93.2 0.1 3.5E-06 54.4 6.1 43 362-409 132-174 (549)
186 3b6e_A Interferon-induced heli 93.1 0.031 1.1E-06 49.6 1.7 23 388-410 49-71 (216)
187 1j8m_F SRP54, signal recogniti 93.0 0.045 1.6E-06 52.9 2.9 25 387-411 98-122 (297)
188 3dzd_A Transcriptional regulat 93.0 0.14 4.9E-06 50.8 6.7 49 359-413 130-178 (368)
189 2bbs_A Cystic fibrosis transme 93.0 0.038 1.3E-06 53.3 2.4 27 385-411 62-88 (290)
190 3ice_A Transcription terminati 93.0 0.056 1.9E-06 54.7 3.6 27 385-411 172-198 (422)
191 2ffh_A Protein (FFH); SRP54, s 92.9 0.059 2E-06 54.9 3.6 26 386-411 97-122 (425)
192 1t6n_A Probable ATP-dependent 92.8 0.11 3.8E-06 46.6 5.1 54 355-410 14-74 (220)
193 2gks_A Bifunctional SAT/APS ki 92.7 0.051 1.7E-06 57.1 3.0 26 387-412 372-397 (546)
194 3bgw_A DNAB-like replicative h 92.7 0.064 2.2E-06 54.8 3.7 27 385-411 195-221 (444)
195 4ag6_A VIRB4 ATPase, type IV s 92.7 0.062 2.1E-06 53.4 3.5 25 387-411 35-59 (392)
196 3fht_A ATP-dependent RNA helic 92.7 0.25 8.6E-06 48.1 7.9 58 348-405 18-82 (412)
197 3nh6_A ATP-binding cassette SU 92.7 0.031 1.1E-06 54.4 1.3 27 385-411 78-104 (306)
198 3fmp_B ATP-dependent RNA helic 92.6 0.14 4.7E-06 51.9 6.1 52 353-404 90-148 (479)
199 2qag_B Septin-6, protein NEDD5 92.5 0.046 1.6E-06 55.8 2.3 22 389-410 44-65 (427)
200 1f2t_A RAD50 ABC-ATPase; DNA d 92.5 0.077 2.6E-06 45.7 3.4 23 389-411 25-47 (149)
201 1u0l_A Probable GTPase ENGC; p 92.4 0.048 1.6E-06 52.6 2.2 25 388-412 170-194 (301)
202 2rcn_A Probable GTPase ENGC; Y 92.4 0.06 2E-06 53.7 2.9 25 388-412 216-240 (358)
203 1qde_A EIF4A, translation init 92.4 0.31 1.1E-05 43.7 7.5 51 354-404 13-68 (224)
204 3pey_A ATP-dependent RNA helic 92.3 0.28 9.7E-06 47.3 7.6 23 386-408 43-65 (395)
205 2j1l_A RHO-related GTP-binding 92.3 0.067 2.3E-06 48.1 2.8 23 387-409 34-56 (214)
206 3tui_C Methionine import ATP-b 92.3 0.063 2.2E-06 53.7 2.9 26 386-411 53-78 (366)
207 3llm_A ATP-dependent RNA helic 92.2 0.086 2.9E-06 48.4 3.6 22 387-408 76-97 (235)
208 1tq4_A IIGP1, interferon-induc 92.1 0.14 4.6E-06 52.0 5.2 22 389-410 71-92 (413)
209 2yv5_A YJEQ protein; hydrolase 92.1 0.077 2.6E-06 51.2 3.2 24 388-412 166-189 (302)
210 2p67_A LAO/AO transport system 92.0 0.087 3E-06 51.7 3.6 26 386-411 55-80 (341)
211 1q57_A DNA primase/helicase; d 92.0 0.064 2.2E-06 55.3 2.6 27 386-412 241-267 (503)
212 4akg_A Glutathione S-transfera 91.9 0.17 5.8E-06 62.2 6.5 31 384-414 1606-1636(2695)
213 1yqt_A RNAse L inhibitor; ATP- 91.7 0.089 3.1E-06 55.1 3.4 26 386-411 46-71 (538)
214 2www_A Methylmalonic aciduria 91.7 0.11 3.6E-06 51.3 3.8 25 387-411 74-98 (349)
215 1sky_E F1-ATPase, F1-ATP synth 91.6 0.1 3.5E-06 53.8 3.6 24 388-411 152-175 (473)
216 3sfz_A APAF-1, apoptotic pepti 91.5 0.17 5.8E-06 56.7 5.6 48 357-410 123-170 (1249)
217 2pl3_A Probable ATP-dependent 91.4 0.43 1.5E-05 43.2 7.4 54 353-406 23-81 (236)
218 3b5x_A Lipid A export ATP-bind 91.4 0.1 3.5E-06 54.9 3.4 28 385-412 367-394 (582)
219 3bor_A Human initiation factor 91.4 0.13 4.5E-06 47.1 3.8 54 353-406 28-86 (237)
220 1xti_A Probable ATP-dependent 91.1 0.23 7.8E-06 48.1 5.4 54 356-409 9-67 (391)
221 1h65_A Chloroplast outer envel 90.8 0.17 5.7E-06 47.5 4.0 24 387-410 39-62 (270)
222 1hv8_A Putative ATP-dependent 90.7 0.43 1.5E-05 45.4 7.0 23 388-410 45-67 (367)
223 3b60_A Lipid A export ATP-bind 90.6 0.098 3.3E-06 55.1 2.4 27 385-411 367-393 (582)
224 2gxq_A Heat resistant RNA depe 90.6 0.16 5.6E-06 44.8 3.5 19 388-406 39-57 (207)
225 3iuy_A Probable ATP-dependent 90.4 0.49 1.7E-05 42.6 6.7 20 387-406 57-76 (228)
226 2g3y_A GTP-binding protein GEM 90.4 0.14 5E-06 46.5 3.1 22 388-409 38-59 (211)
227 1rif_A DAR protein, DNA helica 90.3 0.36 1.2E-05 45.3 5.9 22 389-410 130-151 (282)
228 2zuo_A MVP, major vault protei 90.2 22 0.00074 38.9 20.0 12 136-147 703-714 (861)
229 1knx_A Probable HPR(Ser) kinas 90.2 0.13 4.3E-06 50.4 2.6 22 387-408 147-168 (312)
230 1e9r_A Conjugal transfer prote 90.1 0.16 5.4E-06 51.1 3.3 24 387-410 53-76 (437)
231 1s2m_A Putative ATP-dependent 89.9 0.22 7.6E-06 48.5 4.2 54 353-408 19-79 (400)
232 2oxc_A Probable ATP-dependent 89.8 0.28 9.5E-06 44.6 4.5 53 352-404 21-78 (230)
233 1yqt_A RNAse L inhibitor; ATP- 89.7 0.16 5.3E-06 53.2 3.0 25 387-411 312-336 (538)
234 2yl4_A ATP-binding cassette SU 89.7 0.1 3.6E-06 55.0 1.7 27 385-411 368-394 (595)
235 3ozx_A RNAse L inhibitor; ATP 89.6 0.14 4.7E-06 53.7 2.5 25 387-411 294-318 (538)
236 1vt4_I APAF-1 related killer D 89.5 0.38 1.3E-05 54.5 6.0 43 361-410 131-173 (1221)
237 1t9h_A YLOQ, probable GTPase E 89.5 0.053 1.8E-06 52.9 -0.7 25 387-411 173-197 (307)
238 3qf4_B Uncharacterized ABC tra 89.4 0.12 4.1E-06 54.7 1.8 27 385-411 379-405 (598)
239 3vkw_A Replicase large subunit 89.3 0.13 4.5E-06 52.7 2.1 22 387-408 161-182 (446)
240 2qtf_A Protein HFLX, GTP-bindi 89.3 0.26 8.8E-06 49.0 4.1 24 387-410 179-202 (364)
241 1q0u_A Bstdead; DEAD protein, 89.2 0.45 1.5E-05 42.6 5.4 19 388-406 42-60 (219)
242 1vec_A ATP-dependent RNA helic 89.2 0.22 7.5E-06 44.0 3.3 18 388-405 41-58 (206)
243 4aby_A DNA repair protein RECN 89.2 0.1 3.6E-06 51.8 1.1 25 389-413 62-86 (415)
244 2qag_A Septin-2, protein NEDD5 89.1 0.17 5.9E-06 50.0 2.7 22 388-409 38-59 (361)
245 1ko7_A HPR kinase/phosphatase; 89.1 0.2 6.7E-06 49.1 3.0 23 387-409 144-166 (314)
246 2xau_A PRE-mRNA-splicing facto 88.9 0.26 8.7E-06 53.9 4.1 57 354-410 71-132 (773)
247 2j0s_A ATP-dependent RNA helic 88.9 0.54 1.8E-05 46.0 6.1 54 353-408 35-95 (410)
248 3fe2_A Probable ATP-dependent 88.8 0.68 2.3E-05 42.2 6.4 19 388-406 67-85 (242)
249 4a82_A Cystic fibrosis transme 88.7 0.1 3.5E-06 54.9 0.8 27 385-411 365-391 (578)
250 3bk7_A ABC transporter ATP-bin 88.7 0.2 6.9E-06 53.2 3.0 25 387-411 382-406 (607)
251 3l0o_A Transcription terminati 88.6 0.24 8.1E-06 50.2 3.3 25 387-411 175-199 (427)
252 3bk7_A ABC transporter ATP-bin 88.6 0.2 6.8E-06 53.3 2.9 26 386-411 116-141 (607)
253 2e87_A Hypothetical protein PH 88.6 0.38 1.3E-05 47.2 4.7 23 387-409 167-189 (357)
254 3j16_B RLI1P; ribosome recycli 88.5 0.24 8.3E-06 52.6 3.4 25 387-411 103-127 (608)
255 3def_A T7I23.11 protein; chlor 88.4 0.39 1.3E-05 44.8 4.5 24 387-410 36-59 (262)
256 2wkq_A NPH1-1, RAS-related C3 88.3 0.46 1.6E-05 45.0 5.0 24 387-410 155-178 (332)
257 1mky_A Probable GTP-binding pr 88.3 0.23 7.9E-06 50.2 3.0 23 388-410 181-203 (439)
258 3szr_A Interferon-induced GTP- 88.0 0.46 1.6E-05 50.3 5.3 23 388-410 46-68 (608)
259 3qf4_A ABC transporter, ATP-bi 88.0 0.14 4.8E-06 54.1 1.2 28 385-412 367-394 (587)
260 2i4i_A ATP-dependent RNA helic 87.9 1 3.4E-05 44.0 7.3 50 353-404 13-69 (417)
261 2olr_A Phosphoenolpyruvate car 87.7 0.22 7.4E-06 52.1 2.4 19 387-405 241-259 (540)
262 3h1t_A Type I site-specific re 87.7 0.69 2.4E-05 48.2 6.3 46 360-411 177-222 (590)
263 3l0i_B RAS-related protein RAB 87.5 0.07 2.4E-06 47.1 -1.3 22 387-408 33-54 (199)
264 3j16_B RLI1P; ribosome recycli 87.4 0.24 8.4E-06 52.6 2.7 23 389-411 380-402 (608)
265 3eiq_A Eukaryotic initiation f 87.1 1.2 4E-05 43.4 7.2 52 354-407 39-97 (414)
266 1ii2_A Phosphoenolpyruvate car 86.9 0.26 8.9E-06 51.4 2.5 18 387-404 213-230 (524)
267 1ytm_A Phosphoenolpyruvate car 86.8 0.27 9.1E-06 51.4 2.5 17 388-404 236-252 (532)
268 3gee_A MNME, tRNA modification 86.6 0.35 1.2E-05 49.8 3.2 22 389-410 235-256 (476)
269 3geh_A MNME, tRNA modification 86.5 0.39 1.3E-05 49.3 3.5 22 389-410 226-247 (462)
270 1j3b_A ATP-dependent phosphoen 86.4 0.23 7.8E-06 51.9 1.7 19 387-405 225-243 (529)
271 2iw3_A Elongation factor 3A; a 86.3 0.36 1.2E-05 54.1 3.3 24 386-409 460-483 (986)
272 3cnl_A YLQF, putative uncharac 86.3 0.35 1.2E-05 45.7 2.8 23 388-410 100-122 (262)
273 3ly5_A ATP-dependent RNA helic 86.0 0.34 1.2E-05 45.2 2.6 19 388-406 92-110 (262)
274 1fuu_A Yeast initiation factor 85.8 1.1 3.7E-05 43.2 6.2 50 354-405 20-76 (394)
275 3cio_A ETK, tyrosine-protein k 85.8 1.1 3.7E-05 43.0 6.1 44 367-411 85-129 (299)
276 2oca_A DAR protein, ATP-depend 85.6 0.46 1.6E-05 48.3 3.5 23 388-410 129-151 (510)
277 2ius_A DNA translocase FTSK; n 85.4 0.47 1.6E-05 49.4 3.5 23 387-409 167-189 (512)
278 3bfv_A CAPA1, CAPB2, membrane 85.2 1.3 4.4E-05 41.8 6.2 43 368-411 64-107 (271)
279 1wrb_A DJVLGB; RNA helicase, D 84.9 0.58 2E-05 42.9 3.5 18 388-405 61-78 (253)
280 2fwr_A DNA repair protein RAD2 84.8 0.6 2.1E-05 46.9 3.9 25 388-412 109-133 (472)
281 3dkp_A Probable ATP-dependent 84.6 0.54 1.9E-05 42.8 3.2 17 388-404 67-83 (245)
282 1wb9_A DNA mismatch repair pro 84.5 0.55 1.9E-05 51.5 3.7 25 386-410 606-630 (800)
283 1zcb_A G alpha I/13; GTP-bindi 84.5 0.46 1.6E-05 47.1 2.8 24 387-410 33-56 (362)
284 3ber_A Probable ATP-dependent 84.5 0.62 2.1E-05 43.1 3.5 50 354-405 42-98 (249)
285 1udx_A The GTP-binding protein 84.2 0.36 1.2E-05 48.9 1.9 24 387-410 157-180 (416)
286 3o47_A ADP-ribosylation factor 83.7 0.42 1.4E-05 46.4 2.1 20 389-408 167-186 (329)
287 1ewq_A DNA mismatch repair pro 83.6 0.59 2E-05 51.0 3.4 23 388-410 577-599 (765)
288 3oiy_A Reverse gyrase helicase 83.4 0.56 1.9E-05 46.2 2.9 21 388-408 37-57 (414)
289 2i1j_A Moesin; FERM, coiled-co 83.4 1.9 6.4E-05 45.5 7.1 24 114-137 299-322 (575)
290 1goj_A Kinesin, kinesin heavy 82.9 0.83 2.8E-05 45.3 3.9 17 388-404 82-98 (355)
291 3dpu_A RAB family protein; roc 82.9 1.1 3.7E-05 46.4 5.0 22 388-409 42-63 (535)
292 3t34_A Dynamin-related protein 82.7 0.57 2E-05 45.8 2.6 22 388-409 35-56 (360)
293 2iw3_A Elongation factor 3A; a 82.5 0.34 1.2E-05 54.3 1.0 26 386-411 698-723 (986)
294 3end_A Light-independent proto 82.5 0.83 2.8E-05 43.3 3.6 26 386-411 40-65 (307)
295 1bg2_A Kinesin; motor protein, 82.2 0.91 3.1E-05 44.4 3.9 16 389-404 80-95 (325)
296 3vr4_A V-type sodium ATPase ca 82.0 0.85 2.9E-05 48.1 3.7 27 387-413 232-258 (600)
297 3g5u_A MCG1178, multidrug resi 81.8 0.46 1.6E-05 54.8 1.8 28 385-412 414-441 (1284)
298 4a14_A Kinesin, kinesin-like p 81.8 0.96 3.3E-05 44.6 3.9 17 388-404 85-101 (344)
299 2db3_A ATP-dependent RNA helic 81.7 1.5 5.1E-05 43.9 5.3 51 352-404 53-110 (434)
300 4f4c_A Multidrug resistance pr 81.6 0.51 1.8E-05 54.6 2.1 28 385-412 442-469 (1321)
301 2y65_A Kinesin, kinesin heavy 81.6 0.97 3.3E-05 45.0 3.9 16 389-404 87-102 (365)
302 3gqb_A V-type ATP synthase alp 81.3 0.87 3E-05 47.8 3.5 27 387-413 221-247 (578)
303 3mfy_A V-type ATP synthase alp 80.7 0.68 2.3E-05 48.7 2.4 27 387-413 227-253 (588)
304 1puj_A YLQF, conserved hypothe 80.6 0.81 2.8E-05 43.6 2.8 22 388-409 121-142 (282)
305 2wbe_C Bipolar kinesin KRP-130 80.3 1.2 4.2E-05 44.4 4.1 16 389-404 103-118 (373)
306 1t5c_A CENP-E protein, centrom 80.3 0.96 3.3E-05 44.7 3.2 17 388-404 79-95 (349)
307 3ux8_A Excinuclease ABC, A sub 80.3 0.55 1.9E-05 50.2 1.6 23 386-408 347-369 (670)
308 2va8_A SSO2462, SKI2-type heli 80.2 0.97 3.3E-05 48.3 3.5 21 387-407 46-66 (715)
309 3b6u_A Kinesin-like protein KI 79.9 1.1 3.8E-05 44.7 3.6 17 388-404 103-119 (372)
310 1x88_A Kinesin-like protein KI 79.8 1.2 4.1E-05 44.2 3.8 16 389-404 91-106 (359)
311 3fho_A ATP-dependent RNA helic 79.8 1 3.4E-05 46.3 3.3 20 387-406 158-177 (508)
312 3dc4_A Kinesin-like protein NO 79.5 1.2 4E-05 44.1 3.6 17 388-404 96-112 (344)
313 2vvg_A Kinesin-2; motor protei 79.5 1.1 3.7E-05 44.4 3.3 17 388-404 91-107 (350)
314 2ck3_D ATP synthase subunit be 79.3 1 3.6E-05 46.4 3.2 25 387-411 153-177 (482)
315 3lre_A Kinesin-like protein KI 79.1 1.2 4E-05 44.2 3.4 16 389-404 108-123 (355)
316 3bfn_A Kinesin-like protein KI 78.9 1.3 4.4E-05 44.5 3.7 16 389-404 101-116 (388)
317 3thx_A DNA mismatch repair pro 78.7 1.1 3.6E-05 50.1 3.3 23 387-409 662-684 (934)
318 1gm5_A RECG; helicase, replica 78.6 2.5 8.6E-05 46.2 6.2 22 387-408 389-410 (780)
319 3sqw_A ATP-dependent RNA helic 78.5 2.4 8.1E-05 44.1 5.8 19 387-405 60-78 (579)
320 3thx_B DNA mismatch repair pro 78.5 0.86 2.9E-05 50.8 2.5 23 387-409 673-695 (918)
321 3g5u_A MCG1178, multidrug resi 78.3 0.8 2.7E-05 52.8 2.3 27 385-411 1057-1083(1284)
322 4etp_A Kinesin-like protein KA 78.2 1.5 5.2E-05 44.1 4.1 16 389-404 143-158 (403)
323 4f4c_A Multidrug resistance pr 78.1 0.67 2.3E-05 53.6 1.5 28 385-412 1103-1130(1321)
324 2c61_A A-type ATP synthase non 77.9 0.93 3.2E-05 46.7 2.4 27 387-413 152-178 (469)
325 2j69_A Bacterial dynamin-like 77.6 1.8 6.2E-05 46.5 4.7 24 387-410 69-92 (695)
326 3lvq_E ARF-GAP with SH3 domain 77.6 1.2 4.2E-05 45.3 3.2 23 388-410 323-345 (497)
327 1v8k_A Kinesin-like protein KI 77.5 1.1 3.8E-05 45.3 2.7 16 389-404 157-172 (410)
328 1xzp_A Probable tRNA modificat 77.3 0.86 2.9E-05 47.0 1.9 23 388-410 244-266 (482)
329 2hjg_A GTP-binding protein ENG 77.2 1.2 4.2E-05 44.8 3.0 24 387-410 175-198 (436)
330 2zj8_A DNA helicase, putative 77.1 1 3.6E-05 48.2 2.6 19 387-405 39-57 (720)
331 1of1_A Thymidine kinase; trans 76.9 0.99 3.4E-05 45.1 2.2 24 389-412 51-74 (376)
332 2o8b_B DNA mismatch repair pro 76.5 1.4 4.7E-05 49.7 3.4 22 387-408 789-810 (1022)
333 2iut_A DNA translocase FTSK; n 76.3 1.5 5.3E-05 46.2 3.5 24 388-411 215-238 (574)
334 3ux8_A Excinuclease ABC, A sub 76.0 1.2 4.1E-05 47.5 2.7 18 387-404 44-61 (670)
335 1fx0_B ATP synthase beta chain 75.9 1.4 5E-05 45.5 3.2 25 387-411 165-189 (498)
336 2heh_A KIF2C protein; kinesin, 75.8 1.4 4.9E-05 44.1 3.0 16 389-404 137-152 (387)
337 1f9v_A Kinesin-like protein KA 75.8 1.7 5.7E-05 42.9 3.5 16 389-404 87-102 (347)
338 3t0q_A AGR253WP; kinesin, alph 75.5 1.8 6.2E-05 42.7 3.7 16 389-404 88-103 (349)
339 1z63_A Helicase of the SNF2/RA 75.3 5.6 0.00019 40.1 7.4 45 360-411 36-80 (500)
340 3rc3_A ATP-dependent RNA helic 75.2 1.2 4E-05 48.0 2.3 19 387-405 155-173 (677)
341 2p6r_A Afuhel308 helicase; pro 74.9 0.73 2.5E-05 49.2 0.6 19 387-405 40-58 (702)
342 3ec1_A YQEH GTPase; atnos1, at 74.6 1.9 6.3E-05 42.7 3.5 23 388-410 163-185 (369)
343 2eyq_A TRCF, transcription-rep 74.6 4 0.00014 46.5 6.6 22 387-408 624-645 (1151)
344 4ad8_A DNA repair protein RECN 74.5 0.73 2.5E-05 47.6 0.5 25 389-413 62-86 (517)
345 3i5x_A ATP-dependent RNA helic 73.9 1.9 6.6E-05 44.3 3.5 19 387-405 111-129 (563)
346 2v1x_A ATP-dependent DNA helic 73.8 4.4 0.00015 42.6 6.3 21 388-408 60-80 (591)
347 2h58_A Kinesin-like protein KI 73.6 1.5 5.1E-05 43.0 2.5 16 389-404 83-98 (330)
348 3vr4_D V-type sodium ATPase su 73.5 1.5 5.1E-05 45.0 2.5 27 387-413 151-177 (465)
349 2rep_A Kinesin-like protein KI 73.4 2.3 7.9E-05 42.4 3.8 16 389-404 118-133 (376)
350 2qe7_A ATP synthase subunit al 73.3 1.6 5.5E-05 45.3 2.7 26 387-412 162-188 (502)
351 2zuo_A MVP, major vault protei 73.1 1.1E+02 0.0039 33.4 23.3 8 69-76 626-633 (861)
352 3mca_A HBS1, elongation factor 73.1 1.8 6.1E-05 45.7 3.1 27 385-411 175-201 (592)
353 3gqb_B V-type ATP synthase bet 72.5 1.3 4.5E-05 45.4 1.8 27 387-413 147-173 (464)
354 2r9v_A ATP synthase subunit al 72.4 1.5 5.1E-05 45.6 2.2 26 387-412 175-201 (515)
355 2oze_A ORF delta'; para, walke 72.3 2.2 7.7E-05 40.0 3.3 24 388-411 35-61 (298)
356 3u06_A Protein claret segregat 72.3 1.6 5.6E-05 44.1 2.5 17 388-404 140-156 (412)
357 3la6_A Tyrosine-protein kinase 72.1 5.7 0.00019 37.7 6.1 44 367-411 73-117 (286)
358 1ry6_A Internal kinesin; kines 72.1 2.2 7.4E-05 42.4 3.2 15 390-404 88-102 (360)
359 1lnz_A SPO0B-associated GTP-bi 71.9 1.6 5.5E-05 42.8 2.3 22 388-409 159-180 (342)
360 3p26_A Elongation factor 1 alp 71.5 1.9 6.4E-05 44.1 2.7 28 385-412 31-58 (483)
361 3izq_1 HBS1P, elongation facto 71.3 1.9 6.5E-05 45.7 2.8 26 385-410 165-190 (611)
362 3cob_A Kinesin heavy chain-lik 71.3 1.7 5.7E-05 43.4 2.2 16 389-404 82-97 (369)
363 3h2y_A GTPase family protein; 70.7 2.4 8.3E-05 41.8 3.3 23 388-410 161-183 (368)
364 3fkq_A NTRC-like two-domain pr 70.1 4.6 0.00016 39.6 5.1 26 386-411 142-168 (373)
365 1ihu_A Arsenical pump-driving 70.1 2.5 8.6E-05 44.1 3.4 24 388-411 328-351 (589)
366 2qpt_A EH domain-containing pr 69.9 2 6.9E-05 44.8 2.6 24 387-410 65-88 (550)
367 1fx0_A ATP synthase alpha chai 69.8 1.5 5.3E-05 45.4 1.6 26 387-412 163-189 (507)
368 2ck3_A ATP synthase subunit al 69.3 2.1 7.2E-05 44.5 2.5 25 387-411 162-187 (510)
369 2owm_A Nckin3-434, related to 68.9 3.4 0.00012 42.1 4.0 16 389-404 139-154 (443)
370 3gbj_A KIF13B protein; kinesin 68.7 3.8 0.00013 40.5 4.1 16 389-404 95-110 (354)
371 4a2q_A RIG-I, retinoic acid in 68.4 2.9 9.9E-05 45.3 3.5 23 388-410 264-286 (797)
372 2zfi_A Kinesin-like protein KI 68.0 3.2 0.00011 41.2 3.5 16 389-404 92-107 (366)
373 3nwn_A Kinesin-like protein KI 67.9 2.8 9.5E-05 41.6 3.0 16 389-404 107-122 (359)
374 1oyw_A RECQ helicase, ATP-depe 67.5 1 3.5E-05 46.5 -0.2 21 388-408 41-61 (523)
375 2nr8_A Kinesin-like protein KI 67.5 2.8 9.6E-05 41.5 2.9 16 389-404 106-121 (358)
376 3vkg_A Dynein heavy chain, cyt 67.0 2.7E+02 0.0093 35.3 22.7 36 92-127 1932-1967(3245)
377 3dmq_A RNA polymerase-associat 66.6 4.7 0.00016 45.0 4.8 43 360-411 152-194 (968)
378 2i1j_A Moesin; FERM, coiled-co 66.2 7.2 0.00025 41.0 5.9 14 145-158 339-352 (575)
379 4dcu_A GTP-binding protein ENG 64.5 3.5 0.00012 41.7 3.0 23 387-409 195-217 (456)
380 1gku_B Reverse gyrase, TOP-RG; 64.2 2.8 9.4E-05 47.3 2.4 21 388-408 72-92 (1054)
381 3ez2_A Plasmid partition prote 63.6 5.2 0.00018 39.4 4.0 25 387-411 108-133 (398)
382 3oaa_A ATP synthase subunit al 62.3 3.1 0.00011 43.2 2.1 25 387-411 162-187 (513)
383 3l9o_A ATP-dependent RNA helic 62.0 3.9 0.00013 46.4 3.1 21 388-408 200-220 (1108)
384 2wv9_A Flavivirin protease NS2 61.5 2.1 7.3E-05 45.9 0.8 18 387-404 241-258 (673)
385 4a4z_A Antiviral helicase SKI2 61.2 4.2 0.00014 45.6 3.1 18 388-405 55-72 (997)
386 2xgj_A ATP-dependent RNA helic 60.3 5 0.00017 45.1 3.5 18 388-405 102-119 (1010)
387 3mwy_W Chromo domain-containin 60.2 12 0.00041 40.6 6.5 45 360-411 235-279 (800)
388 3qq5_A Small GTP-binding prote 60.0 1.5 5E-05 44.5 -0.8 22 387-408 34-55 (423)
389 4ddu_A Reverse gyrase; topoiso 59.9 4.8 0.00016 45.7 3.3 21 388-408 94-114 (1104)
390 1r5b_A Eukaryotic peptide chai 59.7 4.1 0.00014 41.5 2.5 27 386-412 42-68 (467)
391 1f5n_A Interferon-induced guan 59.2 48 0.0017 34.8 10.7 9 82-90 443-451 (592)
392 4a2w_A RIG-I, retinoic acid in 59.0 5 0.00017 44.6 3.2 23 388-410 264-286 (936)
393 2w00_A HSDR, R.ECOR124I; ATP-b 58.2 13 0.00045 41.8 6.5 25 387-411 300-324 (1038)
394 2whx_A Serine protease/ntpase/ 57.2 3.9 0.00013 43.3 1.9 17 387-403 186-202 (618)
395 4h1g_A Maltose binding protein 56.0 4.6 0.00016 43.4 2.3 16 389-404 465-480 (715)
396 2vf7_A UVRA2, excinuclease ABC 55.1 2.8 9.6E-05 46.2 0.4 22 387-408 523-545 (842)
397 2ygr_A Uvrabc system protein A 53.4 4 0.00014 45.7 1.3 21 387-407 668-688 (993)
398 1cip_A Protein (guanine nucleo 52.8 7.1 0.00024 38.3 2.8 23 387-409 32-54 (353)
399 2r6f_A Excinuclease ABC subuni 51.6 4.1 0.00014 45.5 0.9 20 388-407 651-670 (972)
400 3pih_A Uvrabc system protein A 49.9 9.1 0.00031 42.5 3.4 18 387-404 610-627 (916)
401 3zvr_A Dynamin-1; hydrolase, D 49.6 14 0.00048 40.2 4.8 25 386-410 50-74 (772)
402 3ez9_A Para; DNA binding, wing 46.8 5.7 0.00019 39.2 1.0 25 387-411 111-136 (403)
403 3fwy_A Light-independent proto 46.7 12 0.00042 35.9 3.4 25 387-411 48-72 (314)
404 3o8b_A HCV NS3 protease/helica 46.5 8.9 0.00031 41.1 2.6 20 387-406 232-251 (666)
405 1z3i_X Similar to RAD54-like; 46.4 24 0.00084 37.1 6.0 48 362-411 56-103 (644)
406 4f92_B U5 small nuclear ribonu 45.6 7.7 0.00026 46.1 2.1 19 387-405 942-960 (1724)
407 4f92_B U5 small nuclear ribonu 41.2 9.9 0.00034 45.2 2.1 19 388-406 96-114 (1724)
408 4a0g_A Adenosylmethionine-8-am 41.1 15 0.00051 40.3 3.3 25 387-411 34-59 (831)
409 2vf7_A UVRA2, excinuclease ABC 39.7 12 0.00041 41.2 2.3 17 389-405 38-54 (842)
410 3avx_A Elongation factor TS, e 38.9 15 0.00053 42.0 3.0 26 385-410 294-319 (1289)
411 2r6f_A Excinuclease ABC subuni 38.7 12 0.00041 41.8 2.1 18 388-405 45-62 (972)
412 2ygr_A Uvrabc system protein A 38.7 12 0.00041 41.9 2.1 17 389-405 48-64 (993)
413 1azs_C GS-alpha; complex (lyas 38.4 15 0.00051 36.8 2.6 21 388-408 41-61 (402)
414 1w7j_A Myosin VA; motor protei 38.0 34 0.0011 37.4 5.5 25 387-411 156-180 (795)
415 4db1_A Myosin-7; S1DC, cardiac 37.3 35 0.0012 37.2 5.5 25 387-411 171-195 (783)
416 4a9a_A Ribosome-interacting GT 37.3 13 0.00046 36.8 2.1 21 389-409 74-94 (376)
417 4anj_A Unconventional myosin-V 37.2 34 0.0012 38.6 5.5 25 387-411 144-168 (1052)
418 1lkx_A Myosin IE heavy chain; 37.1 34 0.0012 36.8 5.3 25 387-411 94-118 (697)
419 1kk8_A Myosin heavy chain, str 34.8 22 0.00075 39.1 3.4 25 387-411 169-193 (837)
420 3iox_A AGI/II, PA; alpha helix 34.7 2.4E+02 0.0082 28.9 10.7 67 96-168 18-84 (497)
421 2v26_A Myosin VI; calmodulin-b 34.5 39 0.0013 36.9 5.2 25 387-411 140-164 (784)
422 1f5n_A Interferon-induced guan 34.5 4.2E+02 0.014 27.6 13.3 28 187-214 506-533 (592)
423 1w9i_A Myosin II heavy chain; 34.5 39 0.0013 36.7 5.3 24 387-410 172-195 (770)
424 3q5d_A Atlastin-1; G protein, 33.7 23 0.00078 36.0 3.1 24 387-410 67-90 (447)
425 4ehx_A Tetraacyldisaccharide 4 32.8 19 0.00066 34.7 2.3 25 387-411 35-62 (315)
426 2ycu_A Non muscle myosin 2C, a 31.9 41 0.0014 37.6 5.1 25 387-411 146-170 (995)
427 3vem_A Helicase protein MOM1; 31.9 2.1E+02 0.0073 23.4 9.6 23 197-219 69-91 (115)
428 1g8x_A Myosin II heavy chain f 31.4 42 0.0014 37.6 5.0 25 387-411 172-196 (1010)
429 2b5u_A Colicin E3; high resolu 31.0 4.1E+02 0.014 27.3 11.6 6 256-261 359-364 (551)
430 1kjw_A Postsynaptic density pr 26.5 38 0.0013 32.1 3.2 22 387-411 105-126 (295)
431 3vp9_A General transcriptional 26.1 2.1E+02 0.0073 22.5 6.9 29 136-164 56-84 (92)
432 3msz_A Glutaredoxin 1; alpha-b 24.3 59 0.002 23.6 3.3 26 389-414 5-30 (89)
433 2zci_A Phosphoenolpyruvate car 24.2 23 0.00079 37.2 1.2 17 389-405 265-281 (610)
434 2d7d_A Uvrabc system protein B 23.6 1.3E+02 0.0043 31.8 6.8 27 388-414 33-59 (661)
435 1r7h_A NRDH-redoxin; thioredox 23.4 66 0.0022 22.4 3.3 26 389-414 2-27 (75)
436 2q2f_A Selenoprotein S; anti-p 22.8 2.7E+02 0.0093 21.7 7.2 41 99-140 43-83 (89)
437 4ido_A Atlastin-1; GTPase, GTP 22.2 47 0.0016 33.9 3.0 23 388-410 68-90 (457)
438 1fov_A Glutaredoxin 3, GRX3; a 21.7 74 0.0025 22.7 3.4 26 389-414 2-27 (82)
439 3ic4_A Glutaredoxin (GRX-1); s 21.4 60 0.0021 24.0 2.8 27 388-414 12-38 (92)
440 3czq_A Putative polyphosphate 20.9 1.2E+02 0.004 29.1 5.4 25 388-412 87-111 (304)
No 1
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.67 E-value=1.8e-17 Score=170.59 Aligned_cols=220 Identities=15% Similarity=0.222 Sum_probs=85.7
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHhchHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014938 148 AQGLRNEDELARKRLQTDHEAQRRHNTELVKMQEESSIRKEQARRSTEEQIQAQQRLTEKERAEIERETIRVKAMAEAEG 227 (415)
Q Consensus 148 ~~~a~y~D~L~rkr~q~ele~~~~~~e~~~~~qees~~rqE~~r~~~e~~~~~~r~~~e~e~~~l~~~~~~~k~~ae~~~ 227 (415)
....+++|++.++++.++...+...+++....++++...++..++.+.+ ++..+.... +.++
T Consensus 11 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~l~~~~-------~~e~ 72 (437)
T 4b4t_L 11 GLGETSGDNHTQQSHEQQPEQPQETEEHHEEEPSRVDPEQEAHNKALNQ-----------FKRKLLEHR-------RYDD 72 (437)
T ss_dssp -------------------------------------------------------------------CH-------HHHH
T ss_pred HhccccccchhhccccchhhhhHHhhhhhhhcchhcchhhHHHHHHHHH-----------HHHHHHHHH-------HHHH
Confidence 4456788999999999999888888887777777777777777665544 222221110 1122
Q ss_pred hHHHHHhhh-hhHHHHHHHHHhhhhHHHHHhhhhhhhhhHHHHHHhhccccceeeee-ccc---ceee--eceecccchh
Q 014938 228 RAHEAKLTE-DHNRRMLIERINGEREKWLAAINTTFSHIEEGVRSLLTDRNKLVMTV-GGA---TALA--AGIYTTREGA 300 (415)
Q Consensus 228 r~~~~r~n~-dl~le~i~~ka~e~r~~~le~ik~~~~~lg~gl~all~D~~klv~~v-~g~---t~La--vgvytak~~~ 300 (415)
+++..+++. ++..+. .+ .+..++.|++.+..+|.+++.+ |.++.++.+ +|. +.+. +.....++|.
T Consensus 73 ~~~~~~~~~~~l~~~~--~~----~~~~~~~l~~~~~~vg~~~~~~--~~~~~iv~~~~g~~~~v~~~~~~~~~~l~~g~ 144 (437)
T 4b4t_L 73 QLKQRRQNIRDLEKLY--DK----TENDIKALQSIGQLIGEVMKEL--SEEKYIVKASSGPRYIVGVRNSVDRSKLKKGV 144 (437)
T ss_dssp HHHHHHHHHHHHHHHH--HH----HHHHHHHHHSCCEEEEEEEECS--SSSCEEEEETTSCEEEECBCSSSCTTSCCTTC
T ss_pred HHHHHHHHHHHHHHHH--HH----HHHHHHHhccCCceeeeheeee--cCCcEEEEECCCCEEEEecccccCHhhcCCCc
Confidence 233333322 232222 22 2233788888998888876654 444544444 331 1111 1111122333
Q ss_pred hhhhhHHHHHhCCCcchhhcccCCCCccchhHHHHHHHhhhcccCCCCCCccccCCCccccCChhHHHHHHHHHHHH---
Q 014938 301 RVTWGYVNRILGQPSLIRESSIGKFPWSGLLSQAMNKVIRNKTSAGTAGPVEAIKNNGDIILHPSLQRRIQHLAKAT--- 377 (415)
Q Consensus 301 ~v~~~~ve~~Lg~pslvRetsr~~~p~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ddvv~~~~l~~~l~~l~~~~--- 377 (415)
+|... ..+ +.+...+....+..+. .-.....+..+|+||+|.++.+..|...+.+.
T Consensus 145 ~v~~~-------------~~~---~~~~~~l~~~~d~~~~-----~~~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~ 203 (437)
T 4b4t_L 145 RVTLD-------------ITT---LTIMRILPRETDPLVY-----NMTSFEQGEITFDGIGGLTEQIRELREVIELPLKN 203 (437)
T ss_dssp EEEEC-------------SSS---CSEEEECCCCSCCCCS-----SCEEEESCSSCSGGGCSCHHHHHHHHHHHHHHHHC
T ss_pred eeeEc-------------ccc---hhHHHhcCcccCchhh-----eeeeccCCCCChhHhCChHHHHHHHHHHHHHHHhC
Confidence 32211 111 1111111000000000 00112356789999999999998877766652
Q ss_pred -Hhh-hhhcCCCccEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 378 -ANT-KIHQAPFRNMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 378 -~~~-k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
..+ +.+..|++|||||||||||||++|++||+++|+|
T Consensus 204 p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~ 242 (437)
T 4b4t_L 204 PEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGAN 242 (437)
T ss_dssp HHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE
T ss_pred HHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 222 3345789999999999999999999999999976
No 2
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.38 E-value=3.6e-13 Score=137.01 Aligned_cols=64 Identities=22% Similarity=0.287 Sum_probs=52.7
Q ss_pred ccccCCCccccCChhHHHHHHHHHHHH----Hhh-hhhcCCCccEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 351 VEAIKNNGDIILHPSLQRRIQHLAKAT----ANT-KIHQAPFRNMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 351 ~~~~~~~ddvv~~~~l~~~l~~l~~~~----~~~-k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
..|..+|+||.|.++.+..|...+.+. ..+ +.+..|++|||||||||||||++|++||+++|+|
T Consensus 141 ~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~ 209 (405)
T 4b4t_J 141 KVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCK 209 (405)
T ss_dssp CSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCE
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCC
Confidence 346789999999999999887776652 222 3355788999999999999999999999999975
No 3
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.31 E-value=4e-13 Score=137.49 Aligned_cols=64 Identities=23% Similarity=0.349 Sum_probs=52.8
Q ss_pred ccccCCCccccCChhHHHHHHHHHHHH----Hhh-hhhcCCCccEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 351 VEAIKNNGDIILHPSLQRRIQHLAKAT----ANT-KIHQAPFRNMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 351 ~~~~~~~ddvv~~~~l~~~l~~l~~~~----~~~-k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
..+..+|+||.|.+++++.|...+.+. ..+ ..+..|++|||||||||||||++|++||+++|++
T Consensus 175 ~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~ 243 (437)
T 4b4t_I 175 KSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSAT 243 (437)
T ss_dssp SSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCE
T ss_pred cCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCC
Confidence 456789999999999999887776652 223 3445778999999999999999999999999975
No 4
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.26 E-value=2.2e-12 Score=132.49 Aligned_cols=64 Identities=27% Similarity=0.371 Sum_probs=52.3
Q ss_pred ccccCCCccccCChhHHHHHHHHHHHH----Hhh-hhhcCCCccEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 351 VEAIKNNGDIILHPSLQRRIQHLAKAT----ANT-KIHQAPFRNMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 351 ~~~~~~~ddvv~~~~l~~~l~~l~~~~----~~~-k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
..+..+|+||+|.+++++.|...+.+. ..+ ..+..|++|||||||||||||++|++||+++|++
T Consensus 165 ~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~ 233 (428)
T 4b4t_K 165 EKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAA 233 (428)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCE
T ss_pred CCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 356789999999999998777665542 222 3455789999999999999999999999999975
No 5
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.23 E-value=7.2e-12 Score=128.80 Aligned_cols=64 Identities=22% Similarity=0.277 Sum_probs=52.1
Q ss_pred ccccCCCccccCChhHHHHHHHHHHH----HHhh-hhhcCCCccEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 351 VEAIKNNGDIILHPSLQRRIQHLAKA----TANT-KIHQAPFRNMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 351 ~~~~~~~ddvv~~~~l~~~l~~l~~~----~~~~-k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
..+..+|+||+|.+++++.|...+.+ ...+ +.+..|++|||||||||||||++|++||+++|+|
T Consensus 174 ~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~ 242 (434)
T 4b4t_M 174 EKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNAT 242 (434)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE
T ss_pred CCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCC
Confidence 45678999999999999877765544 2222 3445779999999999999999999999999975
No 6
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.18 E-value=1.8e-11 Score=126.23 Aligned_cols=64 Identities=23% Similarity=0.387 Sum_probs=52.5
Q ss_pred ccccCCCccccCChhHHHHHHHHHHH----HHhh-hhhcCCCccEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 351 VEAIKNNGDIILHPSLQRRIQHLAKA----TANT-KIHQAPFRNMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 351 ~~~~~~~ddvv~~~~l~~~l~~l~~~----~~~~-k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
..+..+|+||+|.+++++.|...+.+ ...+ +.+..|++|||||||||||||++|++||+++|++
T Consensus 202 e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~ 270 (467)
T 4b4t_H 202 EKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDAT 270 (467)
T ss_dssp SSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCE
T ss_pred CCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCC
Confidence 35678999999999999988776554 2223 3345789999999999999999999999999975
No 7
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.14 E-value=9.2e-10 Score=121.87 Aligned_cols=205 Identities=20% Similarity=0.209 Sum_probs=119.0
Q ss_pred HHHHHHHHHHHHHHHHHhchHHHHhhHhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 014938 155 DELARKRLQTDHEAQRRHNTELVKMQEESSIRKEQARRSTE---EQIQAQQRLTEKERAEIERETIRVKAMAEAEGRAHE 231 (415)
Q Consensus 155 D~L~rkr~q~ele~~~~~~e~~~~~qees~~rqE~~r~~~e---~~~~~~r~~~e~e~~~l~~~~~~~k~~ae~~~r~~~ 231 (415)
++++|+.++.+.+...+.++. +..+..|++.++++.. +++..++.+|+.++..+...........+++..+..
T Consensus 404 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (854)
T 1qvr_A 404 DALERKKLQLEIEREALKKEK----DPDSQERLKAIEAEIAKLTEEIAKLRAEWEREREILRKLREAQHRLDEVRREIEL 479 (854)
T ss_dssp HHHHHHHHHHHHHHHHHSSCS----SHHHHSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcc----ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 567777777777777776662 2233344444444443 367778999999999898888888888777777777
Q ss_pred HHhhhhhHHHHHHHHHhhhhHHHHHhhhhhhhhhHHHHHHhhccccceeeeecccceeeeceecccchhhhhhhHHHHHh
Q 014938 232 AKLTEDHNRRMLIERINGEREKWLAAINTTFSHIEEGVRSLLTDRNKLVMTVGGATALAAGIYTTREGARVTWGYVNRIL 311 (415)
Q Consensus 232 ~r~n~dl~le~i~~ka~e~r~~~le~ik~~~~~lg~gl~all~D~~klv~~v~g~t~Lavgvytak~~~~v~~~~ve~~L 311 (415)
+..+.|+ .++.+.++..++.+......+... +....++...... ......|..++
T Consensus 480 ~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~v~~--------------~~l~~~v~~~~ 534 (854)
T 1qvr_A 480 AERQYDL------NRAAELRYGELPKLEAEVEALSEK-----LRGARFVRLEVTE--------------EDIAEIVSRWT 534 (854)
T ss_dssp HTTTTCH------HHHHHHHTTHHHHHHHHHHHHHHH-----SSSCSSCCSEECH--------------HHHHHHHHTTS
T ss_pred HHhcccH------HHHHHHhhhhhHHHHHHHHHHHhh-----hcccccccCCcCH--------------HHHHHHHHHHh
Confidence 7777777 567777888777776554443221 1111122111111 11222233333
Q ss_pred CCCcchhhcccCCCCccchhHHHHHHHhhhcccCCCCCCccccCCCccccCChhHHHHHHHHHHHHH-hhhhhcCCCccE
Q 014938 312 GQPSLIRESSIGKFPWSGLLSQAMNKVIRNKTSAGTAGPVEAIKNNGDIILHPSLQRRIQHLAKATA-NTKIHQAPFRNM 390 (415)
Q Consensus 312 g~pslvRetsr~~~p~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ddvv~~~~l~~~l~~l~~~~~-~~k~~~~p~r~v 390 (415)
|.|.. .+.... ... +..+ ....+++|+|++.....+...+.... .....+.|..+|
T Consensus 535 ~ip~~-------~~~~~~-~~~-l~~l--------------~~~l~~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~v 591 (854)
T 1qvr_A 535 GIPVS-------KLLEGE-REK-LLRL--------------EEELHKRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSF 591 (854)
T ss_dssp SCHHH-------HTTCCH-HHH-HHSH--------------HHHHHHHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEE
T ss_pred CCChH-------hhcHHH-HHH-HHHH--------------HHHHhcccCCcHHHHHHHHHHHHHHhcccCCCCCCceEE
Confidence 32211 000000 000 0000 01123458898888776655444322 122234556799
Q ss_pred EEecCCCCcHHHHHHHHHHHh
Q 014938 391 LFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 391 Ll~GPPGTGKT~lAkaLA~~l 411 (415)
||+||||||||++|++|+..+
T Consensus 592 Ll~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 592 LFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp EEBSCSSSSHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHh
Confidence 999999999999999999987
No 8
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.96 E-value=9e-10 Score=103.50 Aligned_cols=61 Identities=18% Similarity=0.270 Sum_probs=48.9
Q ss_pred cCCCccccCChhHHHHHHHHHHHHHhhh----hhcCCCccEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 354 IKNNGDIILHPSLQRRIQHLAKATANTK----IHQAPFRNMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 354 ~~~~ddvv~~~~l~~~l~~l~~~~~~~k----~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
...|++++|.+.++..|..+........ .+..++++||||||||||||++|++||.+++.+
T Consensus 2 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~ 66 (262)
T 2qz4_A 2 GVSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVP 66 (262)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCC
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4589999999999998888776643322 223567899999999999999999999998865
No 9
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.92 E-value=1e-09 Score=107.72 Aligned_cols=64 Identities=22% Similarity=0.338 Sum_probs=51.2
Q ss_pred ccccCCCccccCChhHHHHHHHHHHHHHh----hhhhcCCCccEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 351 VEAIKNNGDIILHPSLQRRIQHLAKATAN----TKIHQAPFRNMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 351 ~~~~~~~ddvv~~~~l~~~l~~l~~~~~~----~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
..+...|++|+|.+.++..|...+.+... ...+..|+++||||||||||||++|++||++++.+
T Consensus 11 ~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~ 78 (322)
T 3eie_A 11 EKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANST 78 (322)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCE
T ss_pred cCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCC
Confidence 34567899999999999988777654322 22345678899999999999999999999998764
No 10
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.91 E-value=1.5e-09 Score=106.90 Aligned_cols=60 Identities=22% Similarity=0.431 Sum_probs=48.0
Q ss_pred cccCCCccccCChhHHHHHHHHHHHHHh----hhhhcCCCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 352 EAIKNNGDIILHPSLQRRIQHLAKATAN----TKIHQAPFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 352 ~~~~~~ddvv~~~~l~~~l~~l~~~~~~----~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
.+...|+||+|.+++++.|...+.+... ......|+++||||||||||||++|++||+++
T Consensus 6 ~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 6 RPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHc
Confidence 3467899999999999988776654321 12224577999999999999999999999988
No 11
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.89 E-value=1.8e-09 Score=105.05 Aligned_cols=64 Identities=31% Similarity=0.429 Sum_probs=50.2
Q ss_pred ccccCCCccccCChhHHHHHHHHHHHHH-----hhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 351 VEAIKNNGDIILHPSLQRRIQHLAKATA-----NTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 351 ~~~~~~~ddvv~~~~l~~~l~~l~~~~~-----~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
..+...|++|+|.+.++..|..++.+.. ....+..++++||||||||||||++|++||..++.+
T Consensus 8 ~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~ 76 (301)
T 3cf0_A 8 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN 76 (301)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCE
T ss_pred cCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCC
Confidence 3456789999999999988877766531 112234567899999999999999999999998754
No 12
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=98.87 E-value=2e-09 Score=102.00 Aligned_cols=63 Identities=19% Similarity=0.289 Sum_probs=49.9
Q ss_pred cccCCCccccCChhHHHHHHHHHHHHHhhh----hhcCCCccEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 352 EAIKNNGDIILHPSLQRRIQHLAKATANTK----IHQAPFRNMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 352 ~~~~~~ddvv~~~~l~~~l~~l~~~~~~~k----~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
.+...|++++|++...+.+..+.....+.. .+..++++||||||||||||++|++||..++.|
T Consensus 5 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~ 71 (268)
T 2r62_A 5 KPNVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVP 71 (268)
T ss_dssp CCCCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCC
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 345689999999999998887766533222 233557899999999999999999999998865
No 13
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.86 E-value=1.9e-09 Score=107.57 Aligned_cols=63 Identities=22% Similarity=0.329 Sum_probs=49.2
Q ss_pred cccCCCccccCChhHHHHHHHHHHHH----HhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 352 EAIKNNGDIILHPSLQRRIQHLAKAT----ANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 352 ~~~~~~ddvv~~~~l~~~l~~l~~~~----~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
.+...|++|+|.+.++..|...+.+. .....+..|+++||||||||||||++|++||.+++.+
T Consensus 45 ~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~ 111 (355)
T 2qp9_X 45 KPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANST 111 (355)
T ss_dssp --CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCE
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 45678999999999998887766543 2222334677899999999999999999999998864
No 14
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.85 E-value=3.8e-09 Score=99.76 Aligned_cols=62 Identities=23% Similarity=0.317 Sum_probs=48.8
Q ss_pred ccCCCccccCChhHHHHHHHHHHHHHhhh----hhcCCCccEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 353 AIKNNGDIILHPSLQRRIQHLAKATANTK----IHQAPFRNMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 353 ~~~~~ddvv~~~~l~~~l~~l~~~~~~~k----~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
+...|++++|.+.+++.+..++....+.. .+..+++++|||||||||||++|++|++.++.|
T Consensus 7 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~ 72 (257)
T 1lv7_A 7 IKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVP 72 (257)
T ss_dssp SCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCC
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCC
Confidence 45689999999999998887766543322 223457899999999999999999999998865
No 15
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=98.82 E-value=2.4e-09 Score=117.51 Aligned_cols=63 Identities=30% Similarity=0.400 Sum_probs=51.3
Q ss_pred cccCCCccccCChhHHHHHHHHHHH-HHh---h-hhhcCCCccEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 352 EAIKNNGDIILHPSLQRRIQHLAKA-TAN---T-KIHQAPFRNMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 352 ~~~~~~ddvv~~~~l~~~l~~l~~~-~~~---~-k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
.+..+|+||.|.++.+..|..+..+ ..+ + ..+..|++|||||||||||||++|++||+++|++
T Consensus 198 ~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~ 265 (806)
T 3cf2_A 198 LNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF 265 (806)
T ss_dssp SSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCE
T ss_pred CCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 4567999999999998888777665 222 2 2344789999999999999999999999999875
No 16
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=98.79 E-value=4.9e-09 Score=107.99 Aligned_cols=58 Identities=24% Similarity=0.304 Sum_probs=48.3
Q ss_pred cccCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 352 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 352 ~~~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
.+...|++++|++.+++.+..+..... .+..|++|+|||||||||||++|++||+++|
T Consensus 31 ~~~~~~~~iiG~~~~~~~l~~~~~~~~---~~~~~~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 31 LAKQAASGLVGQENAREACGVIVELIK---SKKMAGRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp CBCSEETTEESCHHHHHHHHHHHHHHH---TTCCTTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ChhhchhhccCHHHHHHHHHHHHHHHH---hCCCCCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 445678999999999988877665433 3445678999999999999999999999998
No 17
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.78 E-value=6.7e-09 Score=99.14 Aligned_cols=63 Identities=25% Similarity=0.401 Sum_probs=48.7
Q ss_pred cccCCCccccCChhHHHHHHHHHHHHH-h---hh-hhcCCCccEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 352 EAIKNNGDIILHPSLQRRIQHLAKATA-N---TK-IHQAPFRNMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 352 ~~~~~~ddvv~~~~l~~~l~~l~~~~~-~---~k-~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
.+...|++++|.+..+..|..++.... + .. .+..+++++|||||||||||++|++||..++.+
T Consensus 11 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~ 78 (285)
T 3h4m_A 11 RPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNAT 78 (285)
T ss_dssp SCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCE
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 456789999999999887776654421 1 11 223567899999999999999999999998764
No 18
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.78 E-value=6.8e-09 Score=99.84 Aligned_cols=63 Identities=27% Similarity=0.397 Sum_probs=48.9
Q ss_pred cccCCCccccCChhHHHHHHHHHHHHHh----hhhhcCCCccEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 352 EAIKNNGDIILHPSLQRRIQHLAKATAN----TKIHQAPFRNMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 352 ~~~~~~ddvv~~~~l~~~l~~l~~~~~~----~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
.+...|++++|++.++..|...+..... ......+.++||||||||||||++|++|+..++.+
T Consensus 15 ~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~ 81 (297)
T 3b9p_A 15 GAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSAT 81 (297)
T ss_dssp SSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCE
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCC
Confidence 3567899999999999887776654321 11123567899999999999999999999998754
No 19
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.76 E-value=6.5e-09 Score=106.89 Aligned_cols=60 Identities=22% Similarity=0.410 Sum_probs=47.5
Q ss_pred cccCCCccccCChhHHHHHHHHHHHHH----hhhhhcCCCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 352 EAIKNNGDIILHPSLQRRIQHLAKATA----NTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 352 ~~~~~~ddvv~~~~l~~~l~~l~~~~~----~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
.+...|++|+|++.++..|...+.+.. .......|+++||||||||||||++|++||.++
T Consensus 128 ~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 128 RPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999988776664421 112224577999999999999999999999988
No 20
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.72 E-value=7.9e-09 Score=99.64 Aligned_cols=61 Identities=26% Similarity=0.333 Sum_probs=41.4
Q ss_pred ccCCCccccCChhHHHHHHHHHHHHH-h---hh-hhcCCCccEEEecCCCCcHHHHHHHHHHHhCC
Q 014938 353 AIKNNGDIILHPSLQRRIQHLAKATA-N---TK-IHQAPFRNMLFYGPPGTGKTMVAREIARKSVW 413 (415)
Q Consensus 353 ~~~~~ddvv~~~~l~~~l~~l~~~~~-~---~k-~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~ 413 (415)
+...|+||+|.+++++.|.....+.. + .+ .+..+++|+|||||||||||+|+++||..++.
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~ 70 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGL 70 (274)
T ss_dssp -------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTC
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCC
Confidence 45689999999999888776443322 1 11 23356788999999999999999999999875
No 21
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=98.71 E-value=6.1e-09 Score=114.34 Aligned_cols=64 Identities=31% Similarity=0.444 Sum_probs=52.1
Q ss_pred ccccCCCccccCChhHHHHHHHHHHHHH----hh-hhhcCCCccEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 351 VEAIKNNGDIILHPSLQRRIQHLAKATA----NT-KIHQAPFRNMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 351 ~~~~~~~ddvv~~~~l~~~l~~l~~~~~----~~-k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
..+...|++++|.++++..|...+.+.. .. +.+..|+++||||||||||||++|++||.++|++
T Consensus 470 ~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~ 538 (806)
T 3cf2_A 470 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN 538 (806)
T ss_dssp BCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCE
T ss_pred cCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCc
Confidence 4567789999999999998877766532 11 2344678999999999999999999999999975
No 22
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.70 E-value=2.3e-08 Score=94.09 Aligned_cols=63 Identities=21% Similarity=0.299 Sum_probs=49.2
Q ss_pred ccccCCCccccCChhHHHHHHHHHHHHHhhh----hhcCCCccEEEecCCCCcHHHHHHHHHHHhCC
Q 014938 351 VEAIKNNGDIILHPSLQRRIQHLAKATANTK----IHQAPFRNMLFYGPPGTGKTMVAREIARKSVW 413 (415)
Q Consensus 351 ~~~~~~~ddvv~~~~l~~~l~~l~~~~~~~k----~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~ 413 (415)
..+...|++++|.+.++..+..+........ .+...+++++||||||||||+++++|++.++.
T Consensus 9 ~~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~ 75 (254)
T 1ixz_A 9 EAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV 75 (254)
T ss_dssp CCCSCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred CCCCCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3456799999999999988888776543221 12244678999999999999999999998764
No 23
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.70 E-value=1.4e-08 Score=101.16 Aligned_cols=63 Identities=27% Similarity=0.308 Sum_probs=49.3
Q ss_pred cccCCCccccCChhHHHHHHHHHHHHHh----hhhhcCCCccEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 352 EAIKNNGDIILHPSLQRRIQHLAKATAN----TKIHQAPFRNMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 352 ~~~~~~ddvv~~~~l~~~l~~l~~~~~~----~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
.+...|++++|.+.++..|...+.+... ......++++||||||||||||++|++||..++.+
T Consensus 78 ~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~ 144 (357)
T 3d8b_A 78 GPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGAT 144 (357)
T ss_dssp SCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTCE
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCCe
Confidence 3467899999999999888776654221 11123567899999999999999999999998864
No 24
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.69 E-value=2e-08 Score=104.44 Aligned_cols=63 Identities=22% Similarity=0.289 Sum_probs=51.2
Q ss_pred cccCCCccccCChhHHHHHHHHHHHHHhhh----hhcCCCccEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 352 EAIKNNGDIILHPSLQRRIQHLAKATANTK----IHQAPFRNMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 352 ~~~~~~ddvv~~~~l~~~l~~l~~~~~~~k----~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
.+...|+||+|.++.+..+..+.....+.. .+..++++||||||||||||++|++||++++.|
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~ 76 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVP 76 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCC
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 346689999999999998888876644322 233567899999999999999999999999876
No 25
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.69 E-value=1.7e-08 Score=101.51 Aligned_cols=63 Identities=29% Similarity=0.414 Sum_probs=49.4
Q ss_pred cccCCCccccCChhHHHHHHHHHHHHHhh----hhhcCCCccEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 352 EAIKNNGDIILHPSLQRRIQHLAKATANT----KIHQAPFRNMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 352 ~~~~~~ddvv~~~~l~~~l~~l~~~~~~~----k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
.....|++++|+..+...|..++...... .....+.++||||||||||||++|++||..++.+
T Consensus 109 ~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~ 175 (389)
T 3vfd_A 109 GTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNAT 175 (389)
T ss_dssp SCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCE
T ss_pred CCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCc
Confidence 34668999999999998877766553321 1223567899999999999999999999998864
No 26
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=98.65 E-value=2.1e-08 Score=97.32 Aligned_cols=31 Identities=19% Similarity=0.126 Sum_probs=28.2
Q ss_pred cCCCccEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 384 QAPFRNMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 384 ~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
..+++++|||||||||||++|++||+++|++
T Consensus 33 ~~~p~~lLl~GppGtGKT~la~aiA~~l~~~ 63 (293)
T 3t15_A 33 IKVPLILGIWGGKGQGKSFQCELVFRKMGIN 63 (293)
T ss_dssp CCCCSEEEEEECTTSCHHHHHHHHHHHHTCC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 3567899999999999999999999999876
No 27
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.63 E-value=3.3e-08 Score=97.62 Aligned_cols=59 Identities=22% Similarity=0.238 Sum_probs=47.0
Q ss_pred cccCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhCC
Q 014938 352 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSVW 413 (415)
Q Consensus 352 ~~~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~ 413 (415)
.+...|++++|++.....+..+...... +..|++++|||||||||||++|++|+..++.
T Consensus 38 ~p~~~~~~ivG~~~~~~~l~~l~~~~~~---~~~~~~~vLl~GppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 38 EPRQASQGMVGQLAARRAAGVVLEMIRE---GKIAGRAVLIAGQPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp CBCSEETTEESCHHHHHHHHHHHHHHHT---TCCTTCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred CcCcchhhccChHHHHHHHHHHHHHHHc---CCCCCCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 4455699999999988877666555432 3345689999999999999999999999874
No 28
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.61 E-value=5.8e-08 Score=101.47 Aligned_cols=62 Identities=21% Similarity=0.298 Sum_probs=50.4
Q ss_pred ccCCCccccCChhHHHHHHHHHHHHHhhh----hhcCCCccEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 353 AIKNNGDIILHPSLQRRIQHLAKATANTK----IHQAPFRNMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 353 ~~~~~ddvv~~~~l~~~l~~l~~~~~~~k----~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
+...|+||+|.++.+..+..+.....+.. .+..++++||||||||||||+||++||..++.+
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~ 91 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVP 91 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCC
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 56789999999999998888877654332 222456789999999999999999999998754
No 29
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.60 E-value=7.1e-08 Score=92.33 Aligned_cols=62 Identities=21% Similarity=0.314 Sum_probs=48.9
Q ss_pred cccCCCccccCChhHHHHHHHHHHHHHhhh----hhcCCCccEEEecCCCCcHHHHHHHHHHHhCC
Q 014938 352 EAIKNNGDIILHPSLQRRIQHLAKATANTK----IHQAPFRNMLFYGPPGTGKTMVAREIARKSVW 413 (415)
Q Consensus 352 ~~~~~~ddvv~~~~l~~~l~~l~~~~~~~k----~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~ 413 (415)
.+...|++++|.++++..+..+........ .+...+++++||||||||||+++++|+..++.
T Consensus 34 ~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~ 99 (278)
T 1iy2_A 34 APKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV 99 (278)
T ss_dssp CCCCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCC
Confidence 367789999999999998888876543321 12234678999999999999999999998764
No 30
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.58 E-value=7.6e-08 Score=94.13 Aligned_cols=58 Identities=24% Similarity=0.306 Sum_probs=46.5
Q ss_pred cCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 354 ~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
+..|++++|+..+...+..++.... ....++.+||||||||||||++|++|++.++.+
T Consensus 25 p~~~~~iiG~~~~~~~l~~~l~~~~---~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~ 82 (338)
T 3pfi_A 25 PSNFDGYIGQESIKKNLNVFIAAAK---KRNECLDHILFSGPAGLGKTTLANIISYEMSAN 82 (338)
T ss_dssp CCSGGGCCSCHHHHHHHHHHHHHHH---HTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCC
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHH---hcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCC
Confidence 4589999999998887766554432 223467799999999999999999999998865
No 31
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.57 E-value=5.9e-08 Score=93.46 Aligned_cols=54 Identities=31% Similarity=0.399 Sum_probs=42.3
Q ss_pred cccCChhHHHHHHHHHHHHHhhhhh-------cCCCccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 359 DIILHPSLQRRIQHLAKATANTKIH-------QAPFRNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 359 dvv~~~~l~~~l~~l~~~~~~~k~~-------~~p~r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
+++|++.+++.|..++......... ..+..+||||||||||||++|++||+.++
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~ 92 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLH 92 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 6999999999888777654432211 34567899999999999999999998874
No 32
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=98.50 E-value=1.1e-07 Score=99.17 Aligned_cols=62 Identities=34% Similarity=0.442 Sum_probs=47.8
Q ss_pred ccCCCccccCChhHHHHHHHHHHHH----Hhhh-hhcCCCccEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 353 AIKNNGDIILHPSLQRRIQHLAKAT----ANTK-IHQAPFRNMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 353 ~~~~~ddvv~~~~l~~~l~~l~~~~----~~~k-~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
...+|++++|.......|..++... .... .+..++++||||||||||||++|++|+..++.+
T Consensus 199 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~ 265 (489)
T 3hu3_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF 265 (489)
T ss_dssp TCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSE
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCC
Confidence 3468999999999888777665542 1122 223567899999999999999999999998754
No 33
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=98.49 E-value=2.4e-07 Score=92.08 Aligned_cols=55 Identities=22% Similarity=0.272 Sum_probs=40.7
Q ss_pred ccCChhHHHHHHHHHHHH-Hhhhhh------cCCCccEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 360 IILHPSLQRRIQHLAKAT-ANTKIH------QAPFRNMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 360 vv~~~~l~~~l~~l~~~~-~~~k~~------~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
|+|++..+..+...+... ...+.+ ..+..+||||||||||||++|++||..++.|
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~ 78 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVP 78 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCC
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 789998888666555322 221111 1257899999999999999999999999875
No 34
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.48 E-value=1.1e-07 Score=91.56 Aligned_cols=50 Identities=34% Similarity=0.596 Sum_probs=40.0
Q ss_pred cCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 354 ~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+..|++++|++.....+..++... ...++|||||||||||++|+++++.+
T Consensus 21 p~~~~~~~g~~~~~~~l~~~l~~~--------~~~~~ll~G~~G~GKT~la~~l~~~l 70 (327)
T 1iqp_A 21 PQRLDDIVGQEHIVKRLKHYVKTG--------SMPHLLFAGPPGVGKTTAALALAREL 70 (327)
T ss_dssp CCSTTTCCSCHHHHHHHHHHHHHT--------CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCHHHhhCCHHHHHHHHHHHHcC--------CCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 557999999998888776554321 23469999999999999999999875
No 35
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.47 E-value=1.5e-07 Score=98.48 Aligned_cols=61 Identities=25% Similarity=0.343 Sum_probs=45.7
Q ss_pred cCCCccccCChhHHHHHHHHHHHHHhhh---------hhcCCCccEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 354 IKNNGDIILHPSLQRRIQHLAKATANTK---------IHQAPFRNMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 354 ~~~~ddvv~~~~l~~~l~~l~~~~~~~k---------~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
+..|++++|++.....|..++....... .+..+++++|||||||||||++|++||+++|++
T Consensus 35 P~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~ 104 (516)
T 1sxj_A 35 PTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYD 104 (516)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCE
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 4589999999998887666654322111 111256899999999999999999999998764
No 36
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.45 E-value=2e-07 Score=90.28 Aligned_cols=58 Identities=28% Similarity=0.469 Sum_probs=45.2
Q ss_pred cCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 354 ~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
+..|++++|.+.....+...+.... ....+..+|||+||||||||++|+++++.++.+
T Consensus 8 p~~~~~~ig~~~~~~~l~~~l~~~~---~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~ 65 (324)
T 1hqc_A 8 PKTLDEYIGQERLKQKLRVYLEAAK---ARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVN 65 (324)
T ss_dssp CCSTTTCCSCHHHHHHHHHHHHHHH---HHCSCCCCCEEECCTTCCCHHHHHHHHHHHTCC
T ss_pred cccHHHhhCHHHHHHHHHHHHHHHH---ccCCCCCcEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4589999999988777665554322 123356799999999999999999999998864
No 37
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.45 E-value=2.7e-07 Score=91.02 Aligned_cols=59 Identities=25% Similarity=0.372 Sum_probs=44.3
Q ss_pred ccCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 353 ~~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
.+.+|+++++++.+...+...+... +..+.++.+++|||||||||||++++||+.+|.+
T Consensus 20 r~~~l~~~~g~~~~~~~l~~~i~~~---~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~ 78 (334)
T 1in4_A 20 RPKSLDEFIGQENVKKKLSLALEAA---KMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTN 78 (334)
T ss_dssp SCSSGGGCCSCHHHHHHHHHHHHHH---HHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCC
T ss_pred CCccHHHccCcHHHHHHHHHHHHHH---HhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 3558999999887766655443322 2234566899999999999999999999998753
No 38
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=98.44 E-value=2.7e-07 Score=88.37 Aligned_cols=56 Identities=27% Similarity=0.363 Sum_probs=40.6
Q ss_pred cccCChhHHHHHHHHHHHHHhh------hhhcCCCccEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 359 DIILHPSLQRRIQHLAKATANT------KIHQAPFRNMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 359 dvv~~~~l~~~l~~l~~~~~~~------k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
+|+|++..+..+...+...... .....++.++|||||||||||++|++|+..++.+
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~ 77 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAP 77 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCC
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 3889998888766554431100 0112356799999999999999999999998764
No 39
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=98.43 E-value=2.1e-07 Score=92.92 Aligned_cols=56 Identities=20% Similarity=0.240 Sum_probs=40.4
Q ss_pred cccCChhHHHHHHHHHHH-HHhhh---------------------hhcCCCccEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 359 DIILHPSLQRRIQHLAKA-TANTK---------------------IHQAPFRNMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 359 dvv~~~~l~~~l~~l~~~-~~~~k---------------------~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
+|+|++.+++.|...+.. ....+ ....+..+||||||||||||++|++||..++.|
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~ 99 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIP 99 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCC
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 388999998877655421 11111 112346799999999999999999999999865
No 40
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=98.43 E-value=1.2e-07 Score=92.56 Aligned_cols=53 Identities=19% Similarity=0.244 Sum_probs=39.5
Q ss_pred cccCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 352 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 352 ~~~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
.+..+|++++|++.+...+...... ....+||||||||||||++|++|+..++
T Consensus 18 ~~~~~f~~i~G~~~~~~~l~~~~~~--------~~~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 18 RPVFPFSAIVGQEDMKLALLLTAVD--------PGIGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHC--------GGGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CCCCCchhccChHHHHHHHHHHhhC--------CCCceEEEECCCCccHHHHHHHHHHhCc
Confidence 3567899999998866543222111 1134799999999999999999999886
No 41
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.42 E-value=2.1e-07 Score=90.60 Aligned_cols=53 Identities=21% Similarity=0.204 Sum_probs=42.0
Q ss_pred cCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhCC
Q 014938 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSVW 413 (415)
Q Consensus 354 ~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~ 413 (415)
+..|++++|++.+...+..++.. +.++..+||+||||||||++++++|+.++.
T Consensus 22 P~~~~~ivg~~~~~~~l~~~l~~-------~~~~~~~L~~G~~G~GKT~la~~la~~l~~ 74 (324)
T 3u61_B 22 PSTIDECILPAFDKETFKSITSK-------GKIPHIILHSPSPGTGKTTVAKALCHDVNA 74 (324)
T ss_dssp CCSTTTSCCCHHHHHHHHHHHHT-------TCCCSEEEECSSTTSSHHHHHHHHHHHTTE
T ss_pred CCCHHHHhCcHHHHHHHHHHHHc-------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCC
Confidence 46899999999988777655542 233456788899999999999999999874
No 42
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=98.41 E-value=3.4e-07 Score=94.28 Aligned_cols=56 Identities=27% Similarity=0.412 Sum_probs=41.9
Q ss_pred cccCChhHHHHHHHHHHHHH-hhhh-----hcCCCccEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 359 DIILHPSLQRRIQHLAKATA-NTKI-----HQAPFRNMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 359 dvv~~~~l~~~l~~l~~~~~-~~k~-----~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
+|+|++++++.|...+...+ .... ...+++|||||||||||||++|++||..++++
T Consensus 16 ~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~ 77 (444)
T 1g41_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAP 77 (444)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCC
T ss_pred HhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 48999999987755543321 1110 11357899999999999999999999999876
No 43
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=98.41 E-value=2.1e-07 Score=90.95 Aligned_cols=49 Identities=16% Similarity=0.130 Sum_probs=38.4
Q ss_pred CCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 356 NNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 356 ~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
.+++++|++.+...+...+.. ..++|||||||||||++|++||..++.+
T Consensus 25 ~~~~i~g~~~~~~~l~~~l~~----------~~~vll~G~pGtGKT~la~~la~~~~~~ 73 (331)
T 2r44_A 25 VGKVVVGQKYMINRLLIGICT----------GGHILLEGVPGLAKTLSVNTLAKTMDLD 73 (331)
T ss_dssp HTTTCCSCHHHHHHHHHHHHH----------TCCEEEESCCCHHHHHHHHHHHHHTTCC
T ss_pred hccceeCcHHHHHHHHHHHHc----------CCeEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 356689998887755443322 2599999999999999999999988764
No 44
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.40 E-value=3.6e-07 Score=81.37 Aligned_cols=56 Identities=21% Similarity=0.199 Sum_probs=39.0
Q ss_pred cCCCccccCC-hhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 354 IKNNGDIILH-PSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 354 ~~~~ddvv~~-~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
..+|++++.. +.....+..+..+..+.... +..+++|+|||||||||++++|++.+
T Consensus 6 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 6 NANLDTYHPKNVSQNRALLTIRVFVHNFNPE--EGKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp TCCSSSCCCCSHHHHHHHHHHHHHHHSCCGG--GCCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred hCccccccCCCHHHHHHHHHHHHHHHhcccc--CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 4578888863 44444555554444332222 25689999999999999999999876
No 45
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.40 E-value=2.9e-07 Score=80.62 Aligned_cols=50 Identities=22% Similarity=0.303 Sum_probs=38.2
Q ss_pred cCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 354 ~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
...|++++|.+.....+...+.. ...+++|||||||||||+++++++..+
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~l~~--------~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 18 QGKLDPVIGRDEEIRRTIQVLQR--------RTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHTS--------SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred hccccccccchHHHHHHHHHHhc--------CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 45788899988766655433211 235789999999999999999999886
No 46
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.40 E-value=2.4e-07 Score=84.85 Aligned_cols=55 Identities=13% Similarity=0.185 Sum_probs=37.3
Q ss_pred ccCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 353 ~~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
+..+|+++++.+.....+..+..+... .+.+++|||||||||||+++++++..++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 23 DDETFTSYYPAAGNDELIGALKSAASG-----DGVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp TTCSTTTSCC--CCHHHHHHHHHHHHT-----CSCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCChhhccCCCCCHHHHHHHHHHHhC-----CCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 346888898743223344444333321 2457999999999999999999998764
No 47
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.39 E-value=2.1e-07 Score=95.98 Aligned_cols=54 Identities=31% Similarity=0.432 Sum_probs=41.6
Q ss_pred ccCCCccccCChhHH---HHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 353 AIKNNGDIILHPSLQ---RRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 353 ~~~~~ddvv~~~~l~---~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
.+..|++++|+..+. ..|...+... ...+||||||||||||++|++|++.++.+
T Consensus 21 rP~~l~~ivGq~~~~~~~~~L~~~i~~~--------~~~~vLL~GppGtGKTtlAr~ia~~~~~~ 77 (447)
T 3pvs_A 21 RPENLAQYIGQQHLLAAGKPLPRAIEAG--------HLHSMILWGPPGTGKTTLAEVIARYANAD 77 (447)
T ss_dssp CCCSTTTCCSCHHHHSTTSHHHHHHHHT--------CCCEEEEECSTTSSHHHHHHHHHHHTTCE
T ss_pred CCCCHHHhCCcHHHHhchHHHHHHHHcC--------CCcEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 356899999999887 4444333321 23699999999999999999999998753
No 48
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.37 E-value=3.6e-07 Score=81.98 Aligned_cols=50 Identities=28% Similarity=0.503 Sum_probs=39.3
Q ss_pred cCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 354 ~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+..|++++|.......+...+.. ....++|||||||||||++++.++..+
T Consensus 13 p~~~~~~~g~~~~~~~l~~~l~~--------~~~~~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 13 PRTLDEVVGQDEVIQRLKGYVER--------KNIPHLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHT--------TCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCHHHHcCcHHHHHHHHHHHhC--------CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 45788999998877766655432 123469999999999999999999875
No 49
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.35 E-value=2.5e-07 Score=81.17 Aligned_cols=50 Identities=24% Similarity=0.302 Sum_probs=38.1
Q ss_pred cCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 354 ~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
...|++++|.+.....+...+.. ...+++||+||||||||+++++++..+
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~l~~--------~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 18 AGKLDPVIGRDTEIRRAIQILSR--------RTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHTS--------SSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred ccccchhhcchHHHHHHHHHHhC--------CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 44788899988766644433211 235699999999999999999999886
No 50
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.34 E-value=6.6e-07 Score=80.91 Aligned_cols=57 Identities=19% Similarity=0.233 Sum_probs=37.6
Q ss_pred cCCCccccCCh-hHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 354 IKNNGDIILHP-SLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 354 ~~~~ddvv~~~-~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
..+|+++++.. .....+..+..+....... .++.+++||||||||||++|++|+..+
T Consensus 21 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 21 RASLSDVDLNDDGRIKAIRFAERFVAEYEPG-KKMKGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CCCTTSSCCSSHHHHHHHHHHHHHHHHCCSS-CCCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCHhhccCCChhHHHHHHHHHHHHHHhhhc-cCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 45788888755 3333444333333221111 123799999999999999999999876
No 51
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.33 E-value=2e-07 Score=91.08 Aligned_cols=52 Identities=31% Similarity=0.493 Sum_probs=40.1
Q ss_pred ccCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 353 ~~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
.+..|++++|++.+...+...+.. ....++|||||||||||+++++|++.++
T Consensus 32 ~p~~~~~i~g~~~~~~~l~~~l~~--------~~~~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 32 RPKNLDEVTAQDHAVTVLKKTLKS--------ANLPHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp CCSSTTTCCSCCTTHHHHHHHTTC--------TTCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCHHHhhCCHHHHHHHHHHHhc--------CCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 356899999999887766544321 1234699999999999999999998864
No 52
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.31 E-value=6.9e-07 Score=84.91 Aligned_cols=31 Identities=39% Similarity=0.670 Sum_probs=27.7
Q ss_pred cCCCccEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 384 QAPFRNMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 384 ~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
..++.++|||||||||||++|++||..++.|
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~ 91 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEESNFP 91 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHHHTCS
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 3457899999999999999999999998875
No 53
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.31 E-value=4.9e-07 Score=88.94 Aligned_cols=52 Identities=25% Similarity=0.470 Sum_probs=39.9
Q ss_pred ccCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 353 ~~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
.+..|++++|++.+...|...+.. + ...|+|||||||||||++++++|+.+.
T Consensus 20 rp~~~~~~~g~~~~~~~L~~~i~~------g--~~~~~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 20 RPETLDEVYGQNEVITTVRKFVDE------G--KLPHLLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp CCSSGGGCCSCHHHHHHHHHHHHT------T--CCCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCCcHHHhcCcHHHHHHHHHHHhc------C--CCceEEEECCCCCCHHHHHHHHHHHHc
Confidence 356899999998877766544432 1 123699999999999999999998863
No 54
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.30 E-value=8.4e-07 Score=86.49 Aligned_cols=56 Identities=16% Similarity=0.229 Sum_probs=36.3
Q ss_pred cccCCCcccc-CChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 352 EAIKNNGDII-LHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 352 ~~~~~~ddvv-~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
.+..+|++++ ++.. ...+..+..... .....+.++|||||||||||+++++|++.+
T Consensus 5 ~~~~~f~~fv~g~~~-~~a~~~~~~~~~---~~~~~~~~lll~G~~GtGKT~la~~i~~~~ 61 (324)
T 1l8q_A 5 NPKYTLENFIVGEGN-RLAYEVVKEALE---NLGSLYNPIFIYGSVGTGKTHLLQAAGNEA 61 (324)
T ss_dssp CTTCCSSSCCCCTTT-HHHHHHHHHHHH---TTTTSCSSEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCCCcccCCCCCcH-HHHHHHHHHHHh---CcCCCCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 3456899887 4332 222222222211 112245799999999999999999999987
No 55
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=98.28 E-value=4.5e-07 Score=99.86 Aligned_cols=63 Identities=29% Similarity=0.415 Sum_probs=48.7
Q ss_pred cccCCCccccCChhHHHHHHHHHHHH-Hhhh----hhcCCCccEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 352 EAIKNNGDIILHPSLQRRIQHLAKAT-ANTK----IHQAPFRNMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 352 ~~~~~~ddvv~~~~l~~~l~~l~~~~-~~~k----~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
.+..+|++++|.+.....|..++... .+.. .+..++.+||||||||||||++|++||+.++.+
T Consensus 198 ~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~ 265 (806)
T 1ypw_A 198 LNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF 265 (806)
T ss_dssp SSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCE
T ss_pred cCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCc
Confidence 34678999999999888777766542 2211 133667899999999999999999999988753
No 56
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.28 E-value=9.5e-07 Score=79.94 Aligned_cols=53 Identities=21% Similarity=0.237 Sum_probs=41.0
Q ss_pred cCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhCC
Q 014938 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSVW 413 (415)
Q Consensus 354 ~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~ 413 (415)
+..|++++|.+.....+...... +..+..+|||||||||||++++.++..++.
T Consensus 19 p~~~~~~~g~~~~~~~l~~~l~~-------~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 19 PQTFADVVGQEHVLTALANGLSL-------GRIHHAYLFSGTRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp CCSGGGCCSCHHHHHHHHHHHHH-------TCCCSEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred CccHHHHhCcHHHHHHHHHHHHc-------CCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 45788899999887766655432 223457999999999999999999988753
No 57
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.27 E-value=4.8e-07 Score=86.80 Aligned_cols=51 Identities=27% Similarity=0.496 Sum_probs=39.6
Q ss_pred ccCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 353 ~~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
.+..|++++|++.....+...+.. + ...++|||||||||||++|+++++.+
T Consensus 12 ~p~~~~~~~g~~~~~~~l~~~l~~------~--~~~~~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 12 RPRTLDEVVGQDEVIQRLKGYVER------K--NIPHLLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp SCSSGGGSCSCHHHHHHHHTTTTT------T--CCCCEEEESSSSSSHHHHHHHHHHHH
T ss_pred CCCCHHHHhCCHHHHHHHHHHHhC------C--CCCeEEEECcCCcCHHHHHHHHHHHh
Confidence 456899999999887766544321 1 23469999999999999999999886
No 58
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.25 E-value=1e-06 Score=76.28 Aligned_cols=25 Identities=32% Similarity=0.493 Sum_probs=23.1
Q ss_pred CccEEEecCCCCcHHHHHHHHHHHh
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
..+|||+||||||||++|++|+..+
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEECCCCCCHHHHHHHHHHhC
Confidence 4689999999999999999999876
No 59
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=98.24 E-value=1.2e-06 Score=84.32 Aligned_cols=54 Identities=24% Similarity=0.408 Sum_probs=38.7
Q ss_pred cccCChhHHHHHHHHHHHHH-hhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 359 DIILHPSLQRRIQHLAKATA-NTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 359 dvv~~~~l~~~l~~l~~~~~-~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
+++|+......+...+.... .......|..++||+||||||||++|++|+..+.
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~ 72 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLF 72 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHc
Confidence 37788887776655544332 1122334556899999999999999999999873
No 60
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.22 E-value=9.7e-07 Score=91.25 Aligned_cols=50 Identities=22% Similarity=0.311 Sum_probs=40.2
Q ss_pred cCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 354 ~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+..|++|||.+.....+..++.. ....|+|||||||||||++|++||..+
T Consensus 176 ~~~ld~iiGr~~~i~~l~~~l~r--------~~~~~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 176 EDSLDPVIGRSKEIQRVIEVLSR--------RTKNNPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp SSCSCCCCCCHHHHHHHHHHHHC--------SSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred cCCCCCccCcHHHHHHHHHHHhc--------cCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 45789999999877766544322 235699999999999999999999986
No 61
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.20 E-value=2.1e-06 Score=84.40 Aligned_cols=53 Identities=21% Similarity=0.237 Sum_probs=41.7
Q ss_pred cCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhCC
Q 014938 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSVW 413 (415)
Q Consensus 354 ~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~ 413 (415)
+..|++++|++.....+...+.. +..+..+|||||||||||++++++++.++.
T Consensus 12 p~~~~~~vg~~~~~~~L~~~l~~-------~~~~~~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 12 PQTFADVVGQEHVLTALANGLSL-------GRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp CCSTTTSCSCHHHHHHHHHHHHH-------TCCCSEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred CCchhhccCcHHHHHHHHHHHHh-------CCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 45789999999888876655432 223456899999999999999999998864
No 62
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=98.20 E-value=1.7e-06 Score=91.07 Aligned_cols=56 Identities=25% Similarity=0.248 Sum_probs=41.6
Q ss_pred CccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 357 NGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 357 ~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
+++++|..+++..+........... ..+..++||+||||||||++|++||..++.+
T Consensus 80 ~~di~G~~~vk~~i~~~~~l~~~~~--~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~ 135 (543)
T 3m6a_A 80 DEEHHGLEKVKERILEYLAVQKLTK--SLKGPILCLAGPPGVGKTSLAKSIAKSLGRK 135 (543)
T ss_dssp HHHCSSCHHHHHHHHHHHHHHHHSS--SCCSCEEEEESSSSSSHHHHHHHHHHHHTCE
T ss_pred HHHhccHHHHHHHHHHHHHHHHhcc--cCCCCEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 4568888998887765544332211 1256789999999999999999999988754
No 63
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.20 E-value=1.5e-06 Score=85.03 Aligned_cols=57 Identities=16% Similarity=0.218 Sum_probs=36.6
Q ss_pred cCCCccccCChhH-HHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 354 IKNNGDIILHPSL-QRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 354 ~~~~ddvv~~~~l-~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
..+|+++++.... ...+.....+..... ..+..+++||||||||||+||.+||..+.
T Consensus 120 ~~tfd~f~~~~~~~~~~~~~~~~~i~~~~--~~~~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 120 HIHLSDIDVNNASRMEAFSAILDFVEQYP--SAEQKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp SCCGGGSCCCSHHHHHHHHHHHHHHHHCS--CSSCCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred hCCHhhCcCCChHHHHHHHHHHHHHHhcc--ccCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 3578888875522 223332222222111 11357999999999999999999998653
No 64
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=98.19 E-value=6.5e-07 Score=98.63 Aligned_cols=64 Identities=31% Similarity=0.449 Sum_probs=49.5
Q ss_pred ccccCCCccccCChhHHHHHHHHHHHHHh-----hhhhcCCCccEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 351 VEAIKNNGDIILHPSLQRRIQHLAKATAN-----TKIHQAPFRNMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 351 ~~~~~~~ddvv~~~~l~~~l~~l~~~~~~-----~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
..+...|+++++.+.++..|..+..+... ...+..+..++|||||||||||++|++||..++.+
T Consensus 470 ~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~ 538 (806)
T 1ypw_A 470 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN 538 (806)
T ss_dssp CCCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCC
T ss_pred cCccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCC
Confidence 45677899999999999888766543211 11223567899999999999999999999998865
No 65
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=98.19 E-value=5.1e-07 Score=78.08 Aligned_cols=47 Identities=15% Similarity=0.182 Sum_probs=31.8
Q ss_pred ccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 360 IILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 360 vv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
++|.......+...+.... ....+||||||||||||++|++|+..++
T Consensus 6 ~iG~s~~~~~l~~~~~~~~------~~~~~vll~G~~GtGKt~lA~~i~~~~~ 52 (143)
T 3co5_A 6 KLGNSAAIQEMNREVEAAA------KRTSPVFLTGEAGSPFETVARYFHKNGT 52 (143)
T ss_dssp --CCCHHHHHHHHHHHHHH------TCSSCEEEEEETTCCHHHHHGGGCCTTS
T ss_pred ceeCCHHHHHHHHHHHHHh------CCCCcEEEECCCCccHHHHHHHHHHhCC
Confidence 6676666554444443321 1246899999999999999999987654
No 66
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.18 E-value=1.3e-06 Score=83.88 Aligned_cols=50 Identities=28% Similarity=0.372 Sum_probs=39.5
Q ss_pred cCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 354 ~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+..|++++|++.....+...+.. + ...++|||||||||||++|+++++.+
T Consensus 17 p~~~~~~~g~~~~~~~l~~~l~~-------~-~~~~~ll~G~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 17 PQVLSDIVGNKETIDRLQQIAKD-------G-NMPHMIISGMPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp CSSGGGCCSCTHHHHHHHHHHHS-------C-CCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCHHHHHCCHHHHHHHHHHHHc-------C-CCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 55789999999888776655422 1 23359999999999999999999875
No 67
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.10 E-value=1.5e-06 Score=85.19 Aligned_cols=52 Identities=21% Similarity=0.356 Sum_probs=38.8
Q ss_pred ccCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 353 ~~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
.+..|++++|++.+...+...+. +.+ ...++||+||||||||+++++|++.+
T Consensus 9 rP~~~~~~vg~~~~~~~l~~~~~-----~~~--~~~~~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 9 RPKSLNALSHNEELTNFLKSLSD-----QPR--DLPHLLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp CCCSGGGCCSCHHHHHHHHTTTT-----CTT--CCCCEEEECSTTSSHHHHHHTHHHHH
T ss_pred CCCCHHHhcCCHHHHHHHHHHHh-----hCC--CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999987776654330 111 22359999999999999999999964
No 68
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.08 E-value=2.7e-06 Score=92.82 Aligned_cols=50 Identities=22% Similarity=0.311 Sum_probs=40.4
Q ss_pred cCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 354 ~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
...|+++||.+.....+..++.. ....|+|||||||||||++|++||..+
T Consensus 176 ~~~ld~iiG~~~~i~~l~~~l~~--------~~~~~vLL~G~pGtGKT~la~~la~~l 225 (758)
T 3pxi_A 176 EDSLDPVIGRSKEIQRVIEVLSR--------RTKNNPVLIGEPGVGKTAIAEGLAQQI 225 (758)
T ss_dssp SSCSCCCCCCHHHHHHHHHHHHC--------SSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred hCCCCCccCchHHHHHHHHHHhC--------CCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 45789999999887766554322 235699999999999999999999987
No 69
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.06 E-value=4.2e-06 Score=85.83 Aligned_cols=56 Identities=13% Similarity=0.155 Sum_probs=36.5
Q ss_pred ccccCCCcccc-CChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 351 VEAIKNNGDII-LHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 351 ~~~~~~~ddvv-~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
..+..+|++++ |+.. ...+..+..... ..+. +.++|||||||||||||+++|++.+
T Consensus 98 l~~~~tfd~fv~g~~n-~~a~~~~~~~a~---~~~~-~~~lll~Gp~G~GKTtLa~aia~~l 154 (440)
T 2z4s_A 98 LNPDYTFENFVVGPGN-SFAYHAALEVAK---HPGR-YNPLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_dssp CCTTCSGGGCCCCTTT-HHHHHHHHHHHH---STTS-SCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCCCChhhcCCCCch-HHHHHHHHHHHh---CCCC-CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 34566899988 4333 222222222211 1112 6799999999999999999999987
No 70
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.03 E-value=4e-06 Score=80.74 Aligned_cols=26 Identities=35% Similarity=0.548 Sum_probs=23.1
Q ss_pred CccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
..+||||||||||||+||.+||+.++
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~~~ 129 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHTVP 129 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHhhhc
Confidence 45699999999999999999999754
No 71
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=98.02 E-value=3e-06 Score=88.54 Aligned_cols=43 Identities=21% Similarity=0.294 Sum_probs=34.4
Q ss_pred ccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 360 IILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 360 vv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
|+|++.+.+.+...+.. ..+||||||||||||++|++||..++
T Consensus 24 ivGq~~~i~~l~~al~~----------~~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 24 LYERSHAIRLCLLAALS----------GESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp CSSCHHHHHHHHHHHHH----------TCEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred hHHHHHHHHHHHHHHhc----------CCeeEeecCchHHHHHHHHHHHHHHh
Confidence 78888887755433322 35999999999999999999998874
No 72
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.02 E-value=6.1e-06 Score=81.37 Aligned_cols=50 Identities=24% Similarity=0.272 Sum_probs=37.8
Q ss_pred ccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 358 GDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 358 ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
++++|.+.....+..++..... +.+++++|||||||||||++++.+++.+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~----~~~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVK----NEVKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHT----TCCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHc----CCCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 6788888777766554433221 2345699999999999999999999876
No 73
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.01 E-value=4.8e-06 Score=90.65 Aligned_cols=56 Identities=21% Similarity=0.265 Sum_probs=39.9
Q ss_pred ccccCChhHHHHHHHHHHH-HHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhCC
Q 014938 358 GDIILHPSLQRRIQHLAKA-TANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSVW 413 (415)
Q Consensus 358 ddvv~~~~l~~~l~~l~~~-~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~ 413 (415)
.+|+|++.....+...+.. .......+.|..++||+||||||||++|++|+..++.
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~ 514 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGI 514 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTC
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcC
Confidence 3577888877755444332 2222223356678999999999999999999999874
No 74
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.99 E-value=5.2e-06 Score=90.54 Aligned_cols=54 Identities=24% Similarity=0.402 Sum_probs=39.1
Q ss_pred ccccCChhHHHHHHHHHHHHH-hhhhhcCCCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 358 GDIILHPSLQRRIQHLAKATA-NTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 358 ddvv~~~~l~~~l~~l~~~~~-~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
++|+|++.....+...+.... .......|..+||||||||||||++|++||..+
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 358888888875554444322 222233455589999999999999999999987
No 75
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=97.97 E-value=5.4e-06 Score=77.04 Aligned_cols=25 Identities=24% Similarity=0.420 Sum_probs=22.8
Q ss_pred ccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 388 RNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 388 r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
+++|||||||||||++|.+|++.++
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4699999999999999999999874
No 76
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.95 E-value=6.6e-06 Score=80.73 Aligned_cols=52 Identities=29% Similarity=0.369 Sum_probs=37.7
Q ss_pred CCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 356 NNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 356 ~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
.+++++|.+.....+..++... .....+++++||||||||||++++.+++.+
T Consensus 17 ~p~~~~gr~~~~~~l~~~l~~~----~~~~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 17 VPDVLPHREAELRRLAEVLAPA----LRGEKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCSCCTTCHHHHHHHHHTTGGG----TSSCCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHH----HcCCCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 4477888887666555433221 112346799999999999999999999877
No 77
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.87 E-value=2.1e-05 Score=77.37 Aligned_cols=53 Identities=17% Similarity=0.166 Sum_probs=38.4
Q ss_pred CCccccCChhHHHHHHHHHHHHHhhhhhcCCC--ccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 356 NNGDIILHPSLQRRIQHLAKATANTKIHQAPF--RNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 356 ~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~--r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
.++++++.+.....+...+..... +.++ ++++|+||||||||+++++++..+.
T Consensus 15 ~p~~l~gr~~~~~~l~~~l~~~~~----~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~ 69 (389)
T 1fnn_A 15 VPKRLPHREQQLQQLDILLGNWLR----NPGHHYPRATLLGRPGTGKTVTLRKLWELYK 69 (389)
T ss_dssp CCSCCTTCHHHHHHHHHHHHHHHH----STTSSCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCCChHHHHHHHHHHHHHHHc----CCCCCCCeEEEECCCCCCHHHHHHHHHHHHh
Confidence 447788888877766555443221 1222 3899999999999999999998873
No 78
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.83 E-value=1.3e-05 Score=78.35 Aligned_cols=53 Identities=23% Similarity=0.278 Sum_probs=37.9
Q ss_pred CCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 355 KNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 355 ~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
..+++++|.+.....+...+... .. .....+++||||||||||++++.++..+
T Consensus 17 ~~p~~~~gr~~e~~~l~~~l~~~---~~-~~~~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 17 YIPDELPHREDQIRKIASILAPL---YR-EEKPNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CCCSCCTTCHHHHHHHHHSSGGG---GG-TCCCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCCCCChHHHHHHHHHHHHHH---Hc-CCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 44577888877666554433211 11 2345799999999999999999999876
No 79
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.82 E-value=1.1e-05 Score=89.12 Aligned_cols=50 Identities=22% Similarity=0.305 Sum_probs=39.7
Q ss_pred cCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 354 ~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+..|++++|.+.....+..++.. ...+|+|||||||||||+++++||+.+
T Consensus 166 ~~~ld~viGr~~~i~~l~~~l~~--------~~~~~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 166 EGKLDPVIGRDEEIRRVIQILLR--------RTKNNPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHHC--------SSCCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred cCCCcccCCcHHHHHHHHHHHhc--------CCCCceEEEcCCCCCHHHHHHHHHHHH
Confidence 56899999998777655544321 235689999999999999999999987
No 80
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.81 E-value=1.4e-05 Score=78.77 Aligned_cols=27 Identities=4% Similarity=0.062 Sum_probs=25.0
Q ss_pred CCCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 385 APFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 385 ~p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
.++.++|||||||||||++++.++.++
T Consensus 43 ~~~~~lli~GpPGTGKT~~v~~v~~~L 69 (318)
T 3te6_A 43 SQNKLFYITNADDSTKFQLVNDVMDEL 69 (318)
T ss_dssp TCCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 456899999999999999999999987
No 81
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.80 E-value=1.4e-05 Score=86.93 Aligned_cols=50 Identities=22% Similarity=0.243 Sum_probs=39.3
Q ss_pred cCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 354 ~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
...|++++|.+.....+..++. .....|+|||||||||||++|++|+..+
T Consensus 182 ~~~~d~~iGr~~~i~~l~~~l~--------~~~~~~vlL~G~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 182 VGGIDPLIGREKELERAIQVLC--------RRRKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHT--------SSSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCCCCccCCHHHHHHHHHHHh--------ccCCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence 4588999999887765544332 1245799999999999999999999876
No 82
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=97.72 E-value=1.9e-05 Score=83.99 Aligned_cols=51 Identities=27% Similarity=0.324 Sum_probs=40.7
Q ss_pred ccCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhCC
Q 014938 353 AIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSVW 413 (415)
Q Consensus 353 ~~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~ 413 (415)
.+..|++++|+..+...+...+.. ..++||+||||||||++|++|+..+..
T Consensus 36 rp~~l~~i~G~~~~l~~l~~~i~~----------g~~vll~Gp~GtGKTtlar~ia~~l~~ 86 (604)
T 3k1j_A 36 PEKLIDQVIGQEHAVEVIKTAANQ----------KRHVLLIGEPGTGKSMLGQAMAELLPT 86 (604)
T ss_dssp CSSHHHHCCSCHHHHHHHHHHHHT----------TCCEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred cccccceEECchhhHhhccccccC----------CCEEEEEeCCCCCHHHHHHHHhccCCc
Confidence 456789999998887766544322 359999999999999999999998753
No 83
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.66 E-value=1.5e-05 Score=69.60 Aligned_cols=26 Identities=15% Similarity=0.309 Sum_probs=23.6
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+..+++|+||||||||+|+++|+..+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999999876
No 84
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.38 E-value=0.00014 Score=70.17 Aligned_cols=26 Identities=31% Similarity=0.494 Sum_probs=23.2
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
.+..|+|.||||+|||++|+.|+..+
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35678899999999999999999887
No 85
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=97.33 E-value=2.9e-05 Score=82.69 Aligned_cols=24 Identities=33% Similarity=0.559 Sum_probs=22.5
Q ss_pred cEEEecCCCCcHHHHHHHHHHHhC
Q 014938 389 NMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 389 ~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
||||+||||||||++|++|+..++
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~~ 352 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVAP 352 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTCS
T ss_pred ceEEECCCchHHHHHHHHHHHhCC
Confidence 899999999999999999998765
No 86
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.33 E-value=0.00018 Score=67.73 Aligned_cols=29 Identities=24% Similarity=0.240 Sum_probs=25.2
Q ss_pred CCCccEEEecCCCCcHHHHHHHHHHHhCC
Q 014938 385 APFRNMLFYGPPGTGKTMVAREIARKSVW 413 (415)
Q Consensus 385 ~p~r~vLl~GPPGTGKT~lAkaLA~~lg~ 413 (415)
..+..|+|.||||+|||++++.|+..++.
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~~ 58 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQG 58 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTTT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 34567899999999999999999998863
No 87
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.32 E-value=0.00017 Score=84.71 Aligned_cols=64 Identities=13% Similarity=0.159 Sum_probs=34.5
Q ss_pred CCccccCCCccccCChhHHHHHHHHHHHHH--------------hhhh-----------------hcCCCcc--EEEecC
Q 014938 349 GPVEAIKNNGDIILHPSLQRRIQHLAKATA--------------NTKI-----------------HQAPFRN--MLFYGP 395 (415)
Q Consensus 349 ~~~~~~~~~ddvv~~~~l~~~l~~l~~~~~--------------~~k~-----------------~~~p~r~--vLl~GP 395 (415)
.+.....+|++|.+..+.+..+...+.+.- ..+. .++++++ +|+|||
T Consensus 1011 ~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~ 1090 (1706)
T 3cmw_A 1011 TGSASGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGP 1090 (1706)
T ss_dssp -------------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECS
T ss_pred ccccCCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcC
Confidence 334566899999888877764433333321 1112 2346666 999999
Q ss_pred CCCcHHHHHHHHHHHhC
Q 014938 396 PGTGKTMVAREIARKSV 412 (415)
Q Consensus 396 PGTGKT~lAkaLA~~lg 412 (415)
||||||+||++++.+.+
T Consensus 1091 ~g~GKT~la~~~~~~~~ 1107 (1706)
T 3cmw_A 1091 ESSGKTTLTLQVIAAAQ 1107 (1706)
T ss_dssp TTSSHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHhh
Confidence 99999999999998653
No 88
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=97.27 E-value=0.00032 Score=69.48 Aligned_cols=54 Identities=15% Similarity=0.182 Sum_probs=35.7
Q ss_pred CCccccCChhHHHHHHHHH-HHHHhhhhhcCCCccEEE--ecCCCCcHHHHHHHHHHHh
Q 014938 356 NNGDIILHPSLQRRIQHLA-KATANTKIHQAPFRNMLF--YGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 356 ~~ddvv~~~~l~~~l~~l~-~~~~~~k~~~~p~r~vLl--~GPPGTGKT~lAkaLA~~l 411 (415)
.++++++.+.....|.... ..... .....+.++++ |||||||||++++.+++.+
T Consensus 20 ~p~~l~gR~~el~~l~~~l~~~~~~--~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~ 76 (412)
T 1w5s_A 20 IPPELRVRRGEAEALARIYLNRLLS--GAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRV 76 (412)
T ss_dssp CCSSCSSSCHHHHHHHHHHHHHHHT--SSCBCCEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred CCCCCCChHHHHHHHHHHHhHHHhc--CCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence 3466788776555555443 32111 00023568999 9999999999999999765
No 89
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.92 E-value=0.00037 Score=68.92 Aligned_cols=26 Identities=15% Similarity=0.171 Sum_probs=22.1
Q ss_pred CccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
.+.+||+||||||||+||..+|...|
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~~G 148 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEALG 148 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhCC
Confidence 45679999999999999999997643
No 90
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.81 E-value=0.00064 Score=64.56 Aligned_cols=28 Identities=36% Similarity=0.465 Sum_probs=25.6
Q ss_pred CccEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
...|+|.||||||||++++.|+..+|++
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~ 75 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYT 75 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCc
Confidence 4589999999999999999999999874
No 91
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.80 E-value=0.0017 Score=66.52 Aligned_cols=52 Identities=19% Similarity=0.250 Sum_probs=35.1
Q ss_pred cccCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 352 EAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 352 ~~~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
..+..|+++ +++....+..+..+... ...++|+.||||||||+++..++..+
T Consensus 18 ~~p~~~~~L--n~~Q~~av~~~~~~i~~------~~~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 18 GSHMTFDDL--TEGQKNAFNIVMKAIKE------KKHHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp ---CCSSCC--CHHHHHHHHHHHHHHHS------SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCccccC--CHHHHHHHHHHHHHHhc------CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 345567755 36666666666554332 12389999999999999999998765
No 92
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.79 E-value=0.0011 Score=66.82 Aligned_cols=28 Identities=32% Similarity=0.392 Sum_probs=24.6
Q ss_pred CCCccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 385 APFRNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 385 ~p~r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
.+...++|+||||||||+++++|+..++
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~~ 194 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELCG 194 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 4566899999999999999999998765
No 93
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.35 E-value=0.0017 Score=77.45 Aligned_cols=27 Identities=26% Similarity=0.418 Sum_probs=23.8
Q ss_pred CCCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 385 APFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 385 ~p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
.+.++++|||||||||||||.+++.+.
T Consensus 1425 ~~g~~vll~GppGtGKT~LA~ala~ea 1451 (2050)
T 3cmu_A 1425 PMGRIVEIYGPESSGKTTLTLQVIAAA 1451 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 357899999999999999999998764
No 94
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=96.11 E-value=0.0057 Score=65.36 Aligned_cols=39 Identities=31% Similarity=0.395 Sum_probs=24.3
Q ss_pred ccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHH
Q 014938 360 IILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIA 408 (415)
Q Consensus 360 vv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA 408 (415)
--+++...+.|...+.. ..-.|++||||||||++...+.
T Consensus 188 ~~LN~~Q~~AV~~al~~----------~~~~lI~GPPGTGKT~ti~~~I 226 (646)
T 4b3f_X 188 TCLDTSQKEAVLFALSQ----------KELAIIHGPPGTGKTTTVVEII 226 (646)
T ss_dssp TTCCHHHHHHHHHHHHC----------SSEEEEECCTTSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhcC----------CCceEEECCCCCCHHHHHHHHH
Confidence 34566655555443321 1246899999999998655443
No 95
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.05 E-value=0.003 Score=60.56 Aligned_cols=27 Identities=22% Similarity=0.252 Sum_probs=23.1
Q ss_pred CccEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
+..|.|.||||+|||++|+.|+ .+|++
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La-~lg~~ 101 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK-NLGAY 101 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH-HHTCE
T ss_pred CEEEEEECCCCCCHHHHHHHHH-HCCCc
Confidence 3468899999999999999999 57764
No 96
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.03 E-value=0.0028 Score=64.23 Aligned_cols=27 Identities=22% Similarity=0.294 Sum_probs=23.9
Q ss_pred CccEEEecCCCCcHHHHHHHHHHHhCC
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARKSVW 413 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~lg~ 413 (415)
+.-|+|.||||+|||++|+.|+..+|+
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~~~~ 284 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVSAGY 284 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGGGTC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 456889999999999999999988875
No 97
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.92 E-value=0.0033 Score=62.36 Aligned_cols=26 Identities=23% Similarity=0.448 Sum_probs=23.6
Q ss_pred ccEEEecCCCCcHHHHHHHHHHHhCC
Q 014938 388 RNMLFYGPPGTGKTMVAREIARKSVW 413 (415)
Q Consensus 388 r~vLl~GPPGTGKT~lAkaLA~~lg~ 413 (415)
+.|+|.||+|||||+|+..||..+|.
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~~ 66 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFPL 66 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSCE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCCC
Confidence 47889999999999999999998873
No 98
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.89 E-value=0.0054 Score=53.97 Aligned_cols=26 Identities=23% Similarity=0.302 Sum_probs=22.7
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+..-+.|.||.|+|||+|.++|+..+
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34467899999999999999999887
No 99
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.87 E-value=0.01 Score=59.15 Aligned_cols=26 Identities=27% Similarity=0.415 Sum_probs=22.4
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+...+++.||+|+|||++.++|+..+
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 34578899999999999999998765
No 100
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.87 E-value=0.004 Score=62.14 Aligned_cols=25 Identities=24% Similarity=0.316 Sum_probs=21.7
Q ss_pred CccEEEecCCCCcHHHHHHHHHHHh
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
..-++|+||||||||+|+..++..+
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~ 85 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEA 85 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4568899999999999999998764
No 101
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.80 E-value=0.0053 Score=59.91 Aligned_cols=26 Identities=23% Similarity=0.401 Sum_probs=22.6
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+...++|+||||+|||+||..++...
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 34568899999999999999999865
No 102
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.75 E-value=0.005 Score=61.11 Aligned_cols=26 Identities=35% Similarity=0.473 Sum_probs=21.9
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+.+-++++||||+|||+||..++...
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~ 85 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANA 85 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34568899999999999999998653
No 103
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.73 E-value=0.0056 Score=58.44 Aligned_cols=26 Identities=19% Similarity=0.180 Sum_probs=22.2
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+..-++|.||||+|||+|++.|+..+
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 44568899999999999999998764
No 104
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.69 E-value=0.015 Score=59.23 Aligned_cols=51 Identities=16% Similarity=0.185 Sum_probs=36.3
Q ss_pred cCCCccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhCC
Q 014938 354 IKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSVW 413 (415)
Q Consensus 354 ~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~ 413 (415)
...++++...+.....+..+. ..+...+++.||+|+|||++.++|+..+.-
T Consensus 143 ~~~l~~Lg~~~~~~~~L~~l~---------~~~ggii~I~GpnGSGKTTlL~allg~l~~ 193 (418)
T 1p9r_A 143 RLDLHSLGMTAHNHDNFRRLI---------KRPHGIILVTGPTGSGKSTTLYAGLQELNS 193 (418)
T ss_dssp CCCGGGSCCCHHHHHHHHHHH---------TSSSEEEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred CCCHHHcCCCHHHHHHHHHHH---------HhcCCeEEEECCCCCCHHHHHHHHHhhcCC
Confidence 456777777666555555441 123446889999999999999999988753
No 105
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.66 E-value=0.0073 Score=59.55 Aligned_cols=26 Identities=19% Similarity=0.245 Sum_probs=22.2
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+..-++|+||||+|||+||..+|...
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~ 146 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTA 146 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34567899999999999999999864
No 106
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.61 E-value=0.0065 Score=60.53 Aligned_cols=26 Identities=27% Similarity=0.430 Sum_probs=22.1
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+.+.++|+||||||||+||..++..+
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34578999999999999999988653
No 107
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=95.60 E-value=0.015 Score=71.30 Aligned_cols=49 Identities=24% Similarity=0.354 Sum_probs=36.2
Q ss_pred cccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 359 DIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 359 dvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
.+|..|-..+-...+..+... ..+++++||||||||.+++.||..+|.+
T Consensus 624 rlViTPltdr~~~tl~~Al~~-------~~~~~l~GpaGtGKTe~vk~LA~~lg~~ 672 (2695)
T 4akg_A 624 RLIYTPLLLIGFATLTDSLHQ-------KYGGCFFGPAGTGKTETVKAFGQNLGRV 672 (2695)
T ss_dssp CCCCCHHHHHHHHHHHHHHHT-------TCEEEEECCTTSCHHHHHHHHHHTTTCC
T ss_pred cceecHHHHHHHHHHHHHHHh-------CCCCcccCCCCCCcHHHHHHHHHHhCCc
Confidence 355556665555445444332 3588999999999999999999999975
No 108
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.58 E-value=0.0063 Score=59.00 Aligned_cols=26 Identities=23% Similarity=0.224 Sum_probs=22.2
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+..-++++||||+|||+||..+|...
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34568899999999999999999764
No 109
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.57 E-value=0.009 Score=58.33 Aligned_cols=27 Identities=30% Similarity=0.533 Sum_probs=23.1
Q ss_pred CCCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 385 APFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 385 ~p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
.+...+.|+||+|+|||+|++.|++.+
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 445678899999999999999999764
No 110
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=95.55 E-value=0.0062 Score=64.42 Aligned_cols=24 Identities=33% Similarity=0.627 Sum_probs=21.2
Q ss_pred ccEEEecCCCCcHHHHHHHHHHHh
Q 014938 388 RNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 388 r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+.+++.||||||||+++.+|+..+
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l 228 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLA 228 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 588999999999999999988653
No 111
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.53 E-value=0.008 Score=58.53 Aligned_cols=26 Identities=31% Similarity=0.351 Sum_probs=22.7
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
++.-+.|.||+|||||++++.||..+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 35678899999999999999999765
No 112
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.53 E-value=0.0055 Score=56.49 Aligned_cols=25 Identities=28% Similarity=0.417 Sum_probs=22.2
Q ss_pred CccEEEecCCCCcHHHHHHHHHHHh
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
.+.|||.||||+|||++|..|+...
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 4689999999999999999998754
No 113
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.51 E-value=0.017 Score=56.42 Aligned_cols=25 Identities=20% Similarity=0.077 Sum_probs=21.6
Q ss_pred CccEEEecCCCCcHHHHHHHHHHHh
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
..-|.|.||+|+|||+|++.|+..+
T Consensus 90 g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 90 PFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEECCCCchHHHHHHHHHhhc
Confidence 4456689999999999999999875
No 114
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=95.49 E-value=0.0049 Score=64.45 Aligned_cols=26 Identities=23% Similarity=0.420 Sum_probs=23.3
Q ss_pred CccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
+.-|+|.|+||+|||++|+.|+..+|
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L~ 60 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYLN 60 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 35788999999999999999999874
No 115
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.47 E-value=0.0078 Score=59.59 Aligned_cols=26 Identities=27% Similarity=0.298 Sum_probs=22.6
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+..-++|+||||+|||+|+..++...
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34567899999999999999999876
No 116
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.29 E-value=0.0094 Score=57.72 Aligned_cols=26 Identities=27% Similarity=0.500 Sum_probs=22.6
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
++..++|.||+|+|||+++..||..+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l 129 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAIS 129 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 35678899999999999999999765
No 117
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.23 E-value=0.011 Score=57.77 Aligned_cols=26 Identities=31% Similarity=0.396 Sum_probs=22.4
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
++.-++|.||+|+|||+++..||..+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHH
Confidence 34568899999999999999999765
No 118
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.22 E-value=0.016 Score=50.68 Aligned_cols=25 Identities=20% Similarity=0.355 Sum_probs=21.8
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHH
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARK 410 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~ 410 (415)
+...|+|+|++|+|||+|...|...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3458999999999999999999864
No 119
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.20 E-value=0.01 Score=59.42 Aligned_cols=26 Identities=35% Similarity=0.437 Sum_probs=21.9
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+...++|+||||+|||+||..++..+
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~ 98 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQA 98 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHH
Confidence 34578899999999999999988653
No 120
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.19 E-value=0.0092 Score=61.00 Aligned_cols=26 Identities=35% Similarity=0.448 Sum_probs=22.9
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
++..|+|+||||+|||+++..||..+
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999999864
No 121
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.17 E-value=0.011 Score=57.34 Aligned_cols=26 Identities=23% Similarity=0.303 Sum_probs=22.4
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
++.-++|.||+|+|||++++.||..+
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34567899999999999999999865
No 122
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.16 E-value=0.012 Score=59.65 Aligned_cols=26 Identities=19% Similarity=0.206 Sum_probs=21.3
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+..-++|+||||||||+|+..|+...
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~ 202 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTC 202 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHh
Confidence 44568899999999999999777443
No 123
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.14 E-value=0.011 Score=58.06 Aligned_cols=24 Identities=17% Similarity=0.155 Sum_probs=21.4
Q ss_pred cEEEecCCCCcHHHHHHHHHHHhC
Q 014938 389 NMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 389 ~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
-|.|.||+|||||+++++|+..++
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 466899999999999999998875
No 124
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=95.13 E-value=0.01 Score=63.24 Aligned_cols=24 Identities=42% Similarity=0.612 Sum_probs=19.6
Q ss_pred ccEEEecCCCCcHHHHHHHHHHHh
Q 014938 388 RNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 388 r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+.+|+.||||||||+++..+...+
T Consensus 196 ~~~li~GppGTGKT~~~~~~i~~l 219 (624)
T 2gk6_A 196 PLSLIQGPPGTGKTVTSATIVYHL 219 (624)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHHH
Confidence 368899999999999887776553
No 125
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.13 E-value=0.012 Score=57.94 Aligned_cols=26 Identities=27% Similarity=0.312 Sum_probs=22.6
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
++.-+.|.||+|+|||++++.||..+
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45678899999999999999999765
No 126
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=94.98 E-value=0.013 Score=58.50 Aligned_cols=26 Identities=23% Similarity=0.400 Sum_probs=22.7
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+...+++.||+|+|||++.++|+..+
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 45578999999999999999999764
No 127
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=94.97 E-value=0.0091 Score=61.30 Aligned_cols=26 Identities=23% Similarity=0.410 Sum_probs=23.3
Q ss_pred CccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
+..|+|.|.||+|||++++.|+..++
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~ 64 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLN 64 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 35799999999999999999998865
No 128
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.91 E-value=0.013 Score=59.95 Aligned_cols=26 Identities=27% Similarity=0.249 Sum_probs=22.5
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
++..|+|.||||+|||+++..||..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l 121 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFY 121 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35678899999999999999999765
No 129
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=94.89 E-value=0.01 Score=58.68 Aligned_cols=27 Identities=15% Similarity=0.241 Sum_probs=23.6
Q ss_pred CccEEEecCCCCcHHHHHHHHHHHhCC
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARKSVW 413 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~lg~ 413 (415)
...+.|.||+|||||+|++.|+..+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~ 196 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNT 196 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 457889999999999999999987654
No 130
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.85 E-value=0.014 Score=56.51 Aligned_cols=25 Identities=20% Similarity=0.175 Sum_probs=22.0
Q ss_pred ccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 388 RNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 388 r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
.-|.|.||+|+|||+|++.|+..++
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4567899999999999999998765
No 131
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=94.81 E-value=0.026 Score=58.82 Aligned_cols=46 Identities=22% Similarity=0.211 Sum_probs=32.6
Q ss_pred ccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHH
Q 014938 358 GDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIAR 409 (415)
Q Consensus 358 ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~ 409 (415)
..+||-+.....|....... ....+-|+++||+|+|||+||..+++
T Consensus 124 ~~~vGR~~~l~~L~~~L~~~------~~~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 124 VVFVTRKKLVNAIQQKLSKL------KGEPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp SSCCCCHHHHHHHHHHHTTS------TTSCEEEEEECCTTSSHHHHHHHHHC
T ss_pred CeecccHHHHHHHHHHHhcc------cCCCceEEEEcCCCCCHHHHHHHHHh
Confidence 44788777666665443221 12246788999999999999999874
No 132
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=94.79 E-value=0.016 Score=61.96 Aligned_cols=28 Identities=21% Similarity=0.137 Sum_probs=24.8
Q ss_pred CccEEEecCCCCcHHHHHHHHHHHh---CCC
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARKS---VWC 414 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~l---g~~ 414 (415)
+..|+|.|+||+|||++|+.|+..+ |++
T Consensus 52 g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~ 82 (630)
T 1x6v_B 52 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIP 82 (630)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCC
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHhcCCe
Confidence 4568899999999999999999998 764
No 133
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=94.77 E-value=0.017 Score=57.69 Aligned_cols=26 Identities=23% Similarity=0.303 Sum_probs=22.6
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
++.-++|.||+|+|||++++.||..+
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 34568899999999999999999865
No 134
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=94.72 E-value=0.015 Score=61.76 Aligned_cols=24 Identities=33% Similarity=0.473 Sum_probs=20.0
Q ss_pred ccEEEecCCCCcHHHHHHHHHHHh
Q 014938 388 RNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 388 r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+.+++.||||||||+++..+...+
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHH
Confidence 589999999999999887776543
No 135
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.66 E-value=0.021 Score=55.52 Aligned_cols=27 Identities=26% Similarity=0.246 Sum_probs=22.3
Q ss_pred CCCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 385 APFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 385 ~p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
.|..-+++.|+||+|||+||..+|...
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~~~ 92 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAKNM 92 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 344568899999999999999998654
No 136
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=94.65 E-value=0.015 Score=57.80 Aligned_cols=27 Identities=22% Similarity=0.365 Sum_probs=23.5
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
+...++|.||+|+|||++.++|+....
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 456899999999999999999997654
No 137
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=94.56 E-value=0.018 Score=60.11 Aligned_cols=26 Identities=0% Similarity=-0.027 Sum_probs=24.1
Q ss_pred ccEEEecCCCCcHHHHHHHHHHHhCC
Q 014938 388 RNMLFYGPPGTGKTMVAREIARKSVW 413 (415)
Q Consensus 388 r~vLl~GPPGTGKT~lAkaLA~~lg~ 413 (415)
.+|+|.|++|||||+++++|+..++.
T Consensus 396 ~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 396 FSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp EEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred eEEEecccCCCCHHHHHHHHHHHHHH
Confidence 57899999999999999999999985
No 138
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.53 E-value=0.02 Score=58.78 Aligned_cols=26 Identities=31% Similarity=0.376 Sum_probs=22.6
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
++.-|+|.||||+|||+++..||..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHH
Confidence 35678899999999999999999765
No 139
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=94.42 E-value=0.017 Score=60.21 Aligned_cols=26 Identities=19% Similarity=0.120 Sum_probs=22.8
Q ss_pred CccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
..++++.||+|+|||++.++|+..+.
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i~ 285 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFIP 285 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 45899999999999999999987653
No 140
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=94.37 E-value=0.016 Score=55.04 Aligned_cols=26 Identities=23% Similarity=0.241 Sum_probs=21.7
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+..-+.|.||+|+|||+|.++|+..+
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34567899999999999999998654
No 141
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=94.37 E-value=0.023 Score=59.07 Aligned_cols=26 Identities=31% Similarity=0.364 Sum_probs=22.3
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
++.-++|.||+|+|||+++++|+..+
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHh
Confidence 34567899999999999999999865
No 142
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=94.36 E-value=0.013 Score=57.57 Aligned_cols=26 Identities=27% Similarity=0.360 Sum_probs=22.9
Q ss_pred CccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
...+++.||+|+|||++.++|+....
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~~ 196 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFIP 196 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 45899999999999999999997654
No 143
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=94.36 E-value=0.057 Score=53.97 Aligned_cols=26 Identities=38% Similarity=0.423 Sum_probs=23.0
Q ss_pred CccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
..+||++|++|||||++|++|...++
T Consensus 160 ~~~vli~Ge~GtGK~~lAr~ih~~s~ 185 (387)
T 1ny5_A 160 ECPVLITGESGVGKEVVARLIHKLSD 185 (387)
T ss_dssp CSCEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCeEEecCCCcCHHHHHHHHHHhcC
Confidence 45799999999999999999987764
No 144
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=94.33 E-value=0.016 Score=53.50 Aligned_cols=25 Identities=32% Similarity=0.417 Sum_probs=21.4
Q ss_pred CccEEEecCCCCcHHHHHHHHHHHh
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
..-+.|.||+|+|||+|.++|+..+
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4568899999999999999998654
No 145
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.31 E-value=0.025 Score=55.41 Aligned_cols=26 Identities=27% Similarity=0.363 Sum_probs=22.5
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
++.-++|.||+|+|||+++..||..+
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45678899999999999999999765
No 146
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.31 E-value=0.026 Score=57.61 Aligned_cols=26 Identities=27% Similarity=0.313 Sum_probs=21.9
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+..-++++||||+|||+|+..++..+
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~ 227 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNV 227 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 44568899999999999999988753
No 147
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=94.30 E-value=0.016 Score=54.83 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=21.3
Q ss_pred CccEEEecCCCCcHHHHHHHHHHHh
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
..-+.|.||+|+|||+|.++|+..+
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4467799999999999999998654
No 148
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.29 E-value=0.021 Score=68.11 Aligned_cols=26 Identities=27% Similarity=0.420 Sum_probs=22.9
Q ss_pred CCCccEEEecCCCCcHHHHHHHHHHH
Q 014938 385 APFRNMLFYGPPGTGKTMVAREIARK 410 (415)
Q Consensus 385 ~p~r~vLl~GPPGTGKT~lAkaLA~~ 410 (415)
.+.+++||||||||||||||..++.+
T Consensus 1079 ~~g~~vll~G~~GtGKT~la~~~~~e 1104 (2050)
T 3cmu_A 1079 PMGRIVEIYGPESSGKTTLTLQVIAA 1104 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 35678999999999999999998864
No 149
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=94.24 E-value=0.022 Score=62.53 Aligned_cols=24 Identities=42% Similarity=0.612 Sum_probs=19.4
Q ss_pred ccEEEecCCCCcHHHHHHHHHHHh
Q 014938 388 RNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 388 r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+.+|+.||||||||+++..+...+
T Consensus 372 ~~~lI~GppGTGKT~ti~~~i~~l 395 (800)
T 2wjy_A 372 PLSLIQGPPGTGKTVTSATIVYHL 395 (800)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHH
Confidence 367899999999999877776543
No 150
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.20 E-value=0.017 Score=53.54 Aligned_cols=26 Identities=23% Similarity=0.199 Sum_probs=22.0
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+..-+.|.||+|+|||+|.++|+..+
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34578899999999999999998654
No 151
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=94.16 E-value=0.02 Score=59.38 Aligned_cols=47 Identities=9% Similarity=0.021 Sum_probs=29.4
Q ss_pred ccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHH-HHH
Q 014938 360 IILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREI-ARK 410 (415)
Q Consensus 360 vv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaL-A~~ 410 (415)
|+|++.++..|.-.+ .....+..+ .-||||.|+||| ||++++++ +..
T Consensus 215 I~G~e~vK~aLll~L-~GG~~k~rg--dihVLL~G~PGt-KS~Lar~i~~~i 262 (506)
T 3f8t_A 215 LPGAEEVGKMLALQL-FSCVGKNSE--RLHVLLAGYPVV-CSEILHHVLDHL 262 (506)
T ss_dssp STTCHHHHHHHHHHH-TTCCSSGGG--CCCEEEESCHHH-HHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHH-cCCccccCC--ceeEEEECCCCh-HHHHHHHHHHHh
Confidence 677777665443222 111111111 128999999999 99999999 654
No 152
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=94.16 E-value=0.043 Score=56.44 Aligned_cols=27 Identities=22% Similarity=0.274 Sum_probs=23.0
Q ss_pred CCCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 385 APFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 385 ~p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
.+..-+++.||+|+|||+|++.|++..
T Consensus 136 ~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 136 FEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 345678999999999999999999753
No 153
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.13 E-value=0.018 Score=53.85 Aligned_cols=25 Identities=28% Similarity=0.280 Sum_probs=21.4
Q ss_pred CccEEEecCCCCcHHHHHHHHHHHh
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
..-+.|.||+|+|||+|.++|+..+
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4567899999999999999998643
No 154
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=94.12 E-value=0.02 Score=54.54 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=21.8
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+..-+.|.||+|+|||+|.++|+..+
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34567799999999999999998654
No 155
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=94.12 E-value=0.017 Score=60.96 Aligned_cols=26 Identities=31% Similarity=0.502 Sum_probs=23.2
Q ss_pred CccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
...+.|.||+|||||+++++|+..++
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCChHHHHHHHHHHhhc
Confidence 45788999999999999999998874
No 156
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=94.10 E-value=0.018 Score=54.12 Aligned_cols=26 Identities=23% Similarity=0.275 Sum_probs=21.8
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+..-+.|.||+|+|||+|.++|+..+
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34567899999999999999998654
No 157
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=94.09 E-value=0.019 Score=54.76 Aligned_cols=26 Identities=31% Similarity=0.455 Sum_probs=22.0
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+..-+.|.||+|+|||+|.++|+..+
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44567899999999999999998654
No 158
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=94.08 E-value=0.085 Score=50.67 Aligned_cols=54 Identities=22% Similarity=0.314 Sum_probs=33.5
Q ss_pred ccccCCCccccCChhHHHHHHHHHH-------HHHhhhhhcCCCccEEEecCCCCcHHHHH
Q 014938 351 VEAIKNNGDIILHPSLQRRIQHLAK-------ATANTKIHQAPFRNMLFYGPPGTGKTMVA 404 (415)
Q Consensus 351 ~~~~~~~ddvv~~~~l~~~l~~l~~-------~~~~~k~~~~p~r~vLl~GPPGTGKT~lA 404 (415)
..+...|+++.+++.+...|...-. ..........+.+++|+++|+|+|||+..
T Consensus 88 ~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~ 148 (300)
T 3fmo_B 88 LYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAF 148 (300)
T ss_dssp CCCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHH
T ss_pred cCCcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHH
Confidence 3445678888888887766543200 00011111234589999999999999864
No 159
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=94.07 E-value=0.02 Score=54.54 Aligned_cols=26 Identities=23% Similarity=0.356 Sum_probs=21.8
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+..-+.|.||+|+|||+|.++|+..+
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 34567799999999999999998654
No 160
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=94.05 E-value=0.03 Score=52.02 Aligned_cols=25 Identities=28% Similarity=0.284 Sum_probs=21.7
Q ss_pred ccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 388 RNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 388 r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
+++|++||+|+|||+++..++..++
T Consensus 109 ~~~ll~~~tG~GKT~~a~~~~~~~~ 133 (237)
T 2fz4_A 109 KRGCIVLPTGSGKTHVAMAAINELS 133 (237)
T ss_dssp SEEEEEESSSTTHHHHHHHHHHHSC
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHcC
Confidence 3699999999999999998887654
No 161
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=94.05 E-value=0.022 Score=56.78 Aligned_cols=25 Identities=36% Similarity=0.453 Sum_probs=21.3
Q ss_pred CccEEEecCCCCcHHHHHHHHHHHh
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
..-+.|.||+|||||+|.++|+...
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3467799999999999999999654
No 162
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.04 E-value=0.03 Score=57.01 Aligned_cols=26 Identities=31% Similarity=0.351 Sum_probs=21.6
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+..-++++||||+|||+||..+|...
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~ 224 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNA 224 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 34567899999999999999988653
No 163
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=94.03 E-value=0.03 Score=53.25 Aligned_cols=25 Identities=28% Similarity=0.535 Sum_probs=21.5
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHH
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARK 410 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~ 410 (415)
+..-+.|.||+|+|||+|.++|+..
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4456789999999999999999964
No 164
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=94.03 E-value=0.019 Score=54.99 Aligned_cols=25 Identities=16% Similarity=0.149 Sum_probs=21.3
Q ss_pred CccEEEecCCCCcHHHHHHHHHHHh
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
..-+.|.||+|+|||+|.++|+..+
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCC
Confidence 3467899999999999999998654
No 165
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=94.01 E-value=0.024 Score=56.86 Aligned_cols=25 Identities=36% Similarity=0.482 Sum_probs=21.3
Q ss_pred CccEEEecCCCCcHHHHHHHHHHHh
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
..-+.|.||+|||||+|.++|+...
T Consensus 37 Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 37 GEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCChHHHHHHHHHcCC
Confidence 4467799999999999999999654
No 166
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.96 E-value=0.021 Score=54.04 Aligned_cols=26 Identities=31% Similarity=0.314 Sum_probs=21.8
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+..-+.|.||+|+|||+|.++|+..+
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 34567899999999999999998643
No 167
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=93.93 E-value=0.021 Score=54.84 Aligned_cols=26 Identities=23% Similarity=0.345 Sum_probs=21.7
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+..-+.|.||+|+|||+|.++|+..+
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34467899999999999999998654
No 168
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=93.86 E-value=0.023 Score=54.03 Aligned_cols=26 Identities=23% Similarity=0.286 Sum_probs=21.7
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+..-+.|.||+|+|||+|.++|+..+
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34567799999999999999998643
No 169
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=93.79 E-value=0.03 Score=53.08 Aligned_cols=26 Identities=23% Similarity=0.312 Sum_probs=22.1
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+..-+.|.||+|+|||+|.++|+..+
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 44578899999999999999998653
No 170
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=93.77 E-value=0.031 Score=61.44 Aligned_cols=22 Identities=45% Similarity=0.712 Sum_probs=18.0
Q ss_pred cEEEecCCCCcHHHHHHHHHHH
Q 014938 389 NMLFYGPPGTGKTMVAREIARK 410 (415)
Q Consensus 389 ~vLl~GPPGTGKT~lAkaLA~~ 410 (415)
.+|+.||||||||+++..+...
T Consensus 377 ~~lI~GppGTGKT~~i~~~i~~ 398 (802)
T 2xzl_A 377 LSLIQGPPGTGKTVTSATIVYH 398 (802)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999987666543
No 171
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=93.59 E-value=0.034 Score=58.79 Aligned_cols=26 Identities=19% Similarity=0.199 Sum_probs=23.1
Q ss_pred CccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
+..|+|.|+||+|||++|+.|+..++
T Consensus 396 ~~~I~l~GlsGSGKSTiA~~La~~L~ 421 (573)
T 1m8p_A 396 GFTIFLTGYMNSGKDAIARALQVTLN 421 (573)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ceEEEeecCCCCCHHHHHHHHHHHhc
Confidence 35688999999999999999999875
No 172
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=93.56 E-value=0.042 Score=53.01 Aligned_cols=25 Identities=28% Similarity=0.293 Sum_probs=21.7
Q ss_pred CccEEEecCCCCcHHHHHHHHHHHh
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+.-+.|.||+|+|||+++..||..+
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~ 122 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYY 122 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4567788999999999999999764
No 173
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=93.55 E-value=0.041 Score=49.64 Aligned_cols=25 Identities=24% Similarity=0.437 Sum_probs=22.2
Q ss_pred CccEEEecCCCCcHHHHHHHHHHHh
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
...|+|.|+||+|||+|+..++..+
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998764
No 174
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=93.45 E-value=0.039 Score=57.34 Aligned_cols=22 Identities=36% Similarity=0.489 Sum_probs=19.3
Q ss_pred CCccEEEecCCCCcHHHHHHHH
Q 014938 386 PFRNMLFYGPPGTGKTMVAREI 407 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaL 407 (415)
+...++|+||||||||+|++.+
T Consensus 38 ~Ge~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 38 IGRSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp TTSEEEEEESTTSSHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHH
Confidence 4567889999999999999994
No 175
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=93.43 E-value=0.041 Score=57.34 Aligned_cols=26 Identities=27% Similarity=0.397 Sum_probs=21.8
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+++.|+|+|+||+|||+++..||..+
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l 125 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYY 125 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999999665
No 176
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=93.43 E-value=0.043 Score=55.99 Aligned_cols=27 Identities=26% Similarity=0.356 Sum_probs=23.4
Q ss_pred CCCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 385 APFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 385 ~p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
.+++.|+|.|++|+|||+++-.||..+
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l 124 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFL 124 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 346789999999999999999999765
No 177
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=93.41 E-value=0.039 Score=65.01 Aligned_cols=27 Identities=26% Similarity=0.418 Sum_probs=23.4
Q ss_pred CCCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 385 APFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 385 ~p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
.+...++|+||||+|||+||..+|..+
T Consensus 730 ~~G~lVlI~G~PG~GKTtLal~lA~~a 756 (1706)
T 3cmw_A 730 PMGRIVEIYGPESSGKTTLTLQVIAAA 756 (1706)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCcHHHHHHHHHHH
Confidence 456789999999999999999998764
No 178
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=93.40 E-value=0.041 Score=57.19 Aligned_cols=26 Identities=27% Similarity=0.397 Sum_probs=22.0
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+..-++++||||||||+|++.++...
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 44568899999999999999998653
No 179
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=93.33 E-value=0.05 Score=53.49 Aligned_cols=26 Identities=19% Similarity=0.239 Sum_probs=22.0
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+..-+.|.||||+|||+|.++|+..+
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 34567899999999999999998654
No 180
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=93.27 E-value=0.042 Score=54.44 Aligned_cols=27 Identities=15% Similarity=0.190 Sum_probs=23.5
Q ss_pred CccEEEecCCCCcHHHHHHHHHHHhCC
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARKSVW 413 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~lg~ 413 (415)
..-+.|.||+|+|||+|.+.|++.+.-
T Consensus 71 Gq~~gIiG~nGaGKTTLl~~I~g~~~~ 97 (347)
T 2obl_A 71 GQRIGIFAGSGVGKSTLLGMICNGASA 97 (347)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 457889999999999999999988653
No 181
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=93.26 E-value=0.095 Score=51.61 Aligned_cols=25 Identities=20% Similarity=0.327 Sum_probs=22.2
Q ss_pred CccEEEecCCCCcHHHHHHHHHHHh
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
...|.|.|+||+|||+++..|+..+
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHH
Confidence 4578999999999999999998765
No 182
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=93.23 E-value=0.044 Score=55.26 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=21.6
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHH
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARK 410 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~ 410 (415)
+..-+.|.||+|||||+|.++|+..
T Consensus 46 ~Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCChHHHHHHHHhCC
Confidence 4456889999999999999999954
No 183
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=93.21 E-value=0.045 Score=55.94 Aligned_cols=27 Identities=22% Similarity=0.290 Sum_probs=23.5
Q ss_pred CccEEEecCCCCcHHHHHHHHHHHhCC
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARKSVW 413 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~lg~ 413 (415)
..-+.|.||+|||||+|.+.|++....
T Consensus 157 Gq~~~IvG~sGsGKSTLl~~Iag~~~~ 183 (438)
T 2dpy_A 157 GQRMGLFAGSGVGKSVLLGMMARYTRA 183 (438)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcccCC
Confidence 456889999999999999999988654
No 184
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.20 E-value=0.053 Score=53.59 Aligned_cols=27 Identities=15% Similarity=0.149 Sum_probs=22.4
Q ss_pred CCCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 385 APFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 385 ~p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
.|..-+++.|+||+|||+|+..+|...
T Consensus 44 ~~G~LiiIaG~pG~GKTt~al~ia~~~ 70 (338)
T 4a1f_A 44 NKGSLVIIGARPSMGKTSLMMNMVLSA 70 (338)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 344568899999999999999998763
No 185
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=93.18 E-value=0.1 Score=54.37 Aligned_cols=43 Identities=14% Similarity=0.199 Sum_probs=29.0
Q ss_pred CChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHH
Q 014938 362 LHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIAR 409 (415)
Q Consensus 362 ~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~ 409 (415)
|-+.....|...+... .....+-|.++|++|+|||+||+.+++
T Consensus 132 GR~~~~~~l~~~L~~~-----~~~~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 132 IREYHVDRVIKKLDEM-----CDLDSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp CCHHHHHHHHHHHHHH-----TTSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CchHHHHHHHHHHhcc-----cCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 5555555444443221 112346788999999999999999996
No 186
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=93.05 E-value=0.031 Score=49.65 Aligned_cols=23 Identities=43% Similarity=0.652 Sum_probs=20.1
Q ss_pred ccEEEecCCCCcHHHHHHHHHHH
Q 014938 388 RNMLFYGPPGTGKTMVAREIARK 410 (415)
Q Consensus 388 r~vLl~GPPGTGKT~lAkaLA~~ 410 (415)
+++|+++|+|+|||+++..++..
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~ 71 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKD 71 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHH
Confidence 58999999999999988877654
No 187
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=93.02 E-value=0.045 Score=52.92 Aligned_cols=25 Identities=32% Similarity=0.329 Sum_probs=21.6
Q ss_pred CccEEEecCCCCcHHHHHHHHHHHh
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+.-++|.||+|+|||+++..||..+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~ 122 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFY 122 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4567789999999999999999765
No 188
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=93.02 E-value=0.14 Score=50.75 Aligned_cols=49 Identities=31% Similarity=0.307 Sum_probs=32.3
Q ss_pred cccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHhCC
Q 014938 359 DIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSVW 413 (415)
Q Consensus 359 dvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~ 413 (415)
++++.......+...+.... ....+||++|++||||+++|+++...++.
T Consensus 130 ~~ig~s~~~~~~~~~~~~~a------~~~~~vli~GesGtGKe~lAr~ih~~s~r 178 (368)
T 3dzd_A 130 EFVGEHPKILEIKRLIPKIA------KSKAPVLITGESGTGKEIVARLIHRYSGR 178 (368)
T ss_dssp CCCCCSHHHHHHHHHHHHHH------TSCSCEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred cccccchHHHHHHhhhhhhh------ccchhheEEeCCCchHHHHHHHHHHhccc
Confidence 45665554443333332222 12347999999999999999999887653
No 189
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=93.01 E-value=0.038 Score=53.32 Aligned_cols=27 Identities=22% Similarity=0.192 Sum_probs=22.1
Q ss_pred CCCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 385 APFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 385 ~p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
.+..-+.|.||.|+|||+|.++|+..+
T Consensus 62 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 62 ERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 344568899999999999999998543
No 190
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=92.98 E-value=0.056 Score=54.71 Aligned_cols=27 Identities=33% Similarity=0.465 Sum_probs=23.2
Q ss_pred CCCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 385 APFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 385 ~p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
.+...++++||||||||+|+..|++.+
T Consensus 172 ~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 172 GRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp BTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred cCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 345689999999999999999998764
No 191
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=92.87 E-value=0.059 Score=54.94 Aligned_cols=26 Identities=27% Similarity=0.273 Sum_probs=22.6
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
++..++|.||+|+|||+++..||..+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l 122 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45678889999999999999999875
No 192
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=92.77 E-value=0.11 Score=46.61 Aligned_cols=54 Identities=22% Similarity=0.183 Sum_probs=32.0
Q ss_pred CCCccccCChhHHHHHHHHHHH-------HHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHH
Q 014938 355 KNNGDIILHPSLQRRIQHLAKA-------TANTKIHQAPFRNMLFYGPPGTGKTMVAREIARK 410 (415)
Q Consensus 355 ~~~ddvv~~~~l~~~l~~l~~~-------~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~ 410 (415)
..|+++.+++.+.+.+...-.. ...... ...+++|+.+|+|+|||..+-..+..
T Consensus 14 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~--~~~~~~li~~~TGsGKT~~~~~~~~~ 74 (220)
T 1t6n_A 14 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQA--ILGMDVLCQAKSGMGKTAVFVLATLQ 74 (220)
T ss_dssp CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHH--HTTCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHH--hCCCCEEEECCCCCchhhhhhHHHHH
Confidence 4577777777777666432100 000000 01368999999999999876655433
No 193
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=92.74 E-value=0.051 Score=57.12 Aligned_cols=26 Identities=23% Similarity=0.197 Sum_probs=22.9
Q ss_pred CccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
...|+|.|+||+|||++|+.|+..++
T Consensus 372 ~~~I~l~G~~GsGKSTia~~La~~L~ 397 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILATMLQ 397 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHhh
Confidence 35688999999999999999998765
No 194
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=92.74 E-value=0.064 Score=54.81 Aligned_cols=27 Identities=26% Similarity=0.246 Sum_probs=22.2
Q ss_pred CCCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 385 APFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 385 ~p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
.|..-+++.|+||+|||+||..+|...
T Consensus 195 ~~G~liiIaG~pG~GKTtlal~ia~~~ 221 (444)
T 3bgw_A 195 KRRNFVLIAARPSMGKTAFALKQAKNM 221 (444)
T ss_dssp CSSCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHH
Confidence 344568899999999999999988654
No 195
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=92.72 E-value=0.062 Score=53.38 Aligned_cols=25 Identities=24% Similarity=0.430 Sum_probs=22.0
Q ss_pred CccEEEecCCCCcHHHHHHHHHHHh
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
..|+++.||+|+|||++++.|+..+
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~~~~~~ 59 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKMLLLRE 59 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCceEEEcCCCCCHHHHHHHHHHHH
Confidence 4599999999999999999998654
No 196
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=92.67 E-value=0.25 Score=48.12 Aligned_cols=58 Identities=22% Similarity=0.325 Sum_probs=35.0
Q ss_pred CCCccccCCCccccCChhHHHHHHHHHH-------HHHhhhhhcCCCccEEEecCCCCcHHHHHH
Q 014938 348 AGPVEAIKNNGDIILHPSLQRRIQHLAK-------ATANTKIHQAPFRNMLFYGPPGTGKTMVAR 405 (415)
Q Consensus 348 ~~~~~~~~~~ddvv~~~~l~~~l~~l~~-------~~~~~k~~~~p~r~vLl~GPPGTGKT~lAk 405 (415)
..+..+...|+++.+++.+.+.+...-. ............+++|+.+|+|+|||+.+-
T Consensus 18 ~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~ 82 (412)
T 3fht_A 18 NSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFV 82 (412)
T ss_dssp TSTTCCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHH
T ss_pred CCCccccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHH
Confidence 3344556678888888877776643210 000001111234799999999999998753
No 197
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=92.66 E-value=0.031 Score=54.42 Aligned_cols=27 Identities=30% Similarity=0.525 Sum_probs=23.0
Q ss_pred CCCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 385 APFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 385 ~p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
.+..-+.|.||+|+|||+|.++|+..+
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 455678899999999999999998654
No 198
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=92.62 E-value=0.14 Score=51.88 Aligned_cols=52 Identities=23% Similarity=0.362 Sum_probs=31.0
Q ss_pred ccCCCccccCChhHHHHHHHHH-------HHHHhhhhhcCCCccEEEecCCCCcHHHHH
Q 014938 353 AIKNNGDIILHPSLQRRIQHLA-------KATANTKIHQAPFRNMLFYGPPGTGKTMVA 404 (415)
Q Consensus 353 ~~~~~ddvv~~~~l~~~l~~l~-------~~~~~~k~~~~p~r~vLl~GPPGTGKT~lA 404 (415)
+...|+++.+++.+.+.|...- ...........+.+++|++||+|+|||..+
T Consensus 90 ~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~ 148 (479)
T 3fmp_B 90 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAF 148 (479)
T ss_dssp CCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHH
T ss_pred CcCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHH
Confidence 3457777777777666554210 000000111123579999999999999864
No 199
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=92.53 E-value=0.046 Score=55.80 Aligned_cols=22 Identities=27% Similarity=0.489 Sum_probs=19.7
Q ss_pred cEEEecCCCCcHHHHHHHHHHH
Q 014938 389 NMLFYGPPGTGKTMVAREIARK 410 (415)
Q Consensus 389 ~vLl~GPPGTGKT~lAkaLA~~ 410 (415)
++.|.||+|+|||+|.++|++.
T Consensus 44 ~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 44 NILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEEECSTTSSSHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 3889999999999999999864
No 200
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=92.53 E-value=0.077 Score=45.74 Aligned_cols=23 Identities=26% Similarity=0.302 Sum_probs=20.0
Q ss_pred cEEEecCCCCcHHHHHHHHHHHh
Q 014938 389 NMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 389 ~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
-.+++||.|+|||++..+|.-.+
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 46789999999999999998655
No 201
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=92.43 E-value=0.048 Score=52.59 Aligned_cols=25 Identities=20% Similarity=0.223 Sum_probs=21.0
Q ss_pred ccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 388 RNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 388 r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
.-+.|.||||+|||+|.++|+....
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred CeEEEECCCCCcHHHHHHHhccccc
Confidence 4577999999999999999986543
No 202
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=92.43 E-value=0.06 Score=53.68 Aligned_cols=25 Identities=24% Similarity=0.385 Sum_probs=21.4
Q ss_pred ccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 388 RNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 388 r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
.-+.|.||||+|||+|.++|+....
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CEEEEECCCCccHHHHHHHHhcccc
Confidence 4688999999999999999986543
No 203
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=92.40 E-value=0.31 Score=43.69 Aligned_cols=51 Identities=22% Similarity=0.177 Sum_probs=29.1
Q ss_pred cCCCccccCChhHHHHHHHHHHH--HHhhh---hhcCCCccEEEecCCCCcHHHHH
Q 014938 354 IKNNGDIILHPSLQRRIQHLAKA--TANTK---IHQAPFRNMLFYGPPGTGKTMVA 404 (415)
Q Consensus 354 ~~~~ddvv~~~~l~~~l~~l~~~--~~~~k---~~~~p~r~vLl~GPPGTGKT~lA 404 (415)
...|+++.+++.+.+.+...-.. ..+-. ......+++|+.+|+|+|||..+
T Consensus 13 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~ 68 (224)
T 1qde_A 13 VYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTF 68 (224)
T ss_dssp CCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHH
T ss_pred cCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHH
Confidence 44677777777766655432100 00000 00011368999999999999863
No 204
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=92.32 E-value=0.28 Score=47.28 Aligned_cols=23 Identities=39% Similarity=0.439 Sum_probs=18.4
Q ss_pred CCccEEEecCCCCcHHHHHHHHH
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIA 408 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA 408 (415)
..+++|+.+|+|+|||+.+-..+
T Consensus 43 ~~~~~lv~a~TGsGKT~~~~~~~ 65 (395)
T 3pey_A 43 PPRNMIAQSQSGTGKTAAFSLTM 65 (395)
T ss_dssp SCCCEEEECCTTSCHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHH
Confidence 34799999999999998665443
No 205
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=92.27 E-value=0.067 Score=48.07 Aligned_cols=23 Identities=26% Similarity=0.316 Sum_probs=20.4
Q ss_pred CccEEEecCCCCcHHHHHHHHHH
Q 014938 387 FRNMLFYGPPGTGKTMVAREIAR 409 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~ 409 (415)
.-+|+|.|+||+|||+|...+..
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHc
Confidence 34899999999999999999874
No 206
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=92.26 E-value=0.063 Score=53.65 Aligned_cols=26 Identities=19% Similarity=0.197 Sum_probs=21.6
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+..-+.|.||+|+|||+|.++|+...
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 34567799999999999999998643
No 207
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=92.23 E-value=0.086 Score=48.41 Aligned_cols=22 Identities=23% Similarity=0.342 Sum_probs=17.7
Q ss_pred CccEEEecCCCCcHHHHHHHHH
Q 014938 387 FRNMLFYGPPGTGKTMVAREIA 408 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA 408 (415)
.+++++.||+|||||++...+.
T Consensus 76 g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 76 NSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp CSEEEEECCTTSSHHHHHHHHH
T ss_pred CCEEEEEeCCCCCcHHhHHHHH
Confidence 3689999999999998665543
No 208
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=92.12 E-value=0.14 Score=52.03 Aligned_cols=22 Identities=23% Similarity=0.383 Sum_probs=20.0
Q ss_pred cEEEecCCCCcHHHHHHHHHHH
Q 014938 389 NMLFYGPPGTGKTMVAREIARK 410 (415)
Q Consensus 389 ~vLl~GPPGTGKT~lAkaLA~~ 410 (415)
.+.|.||+|+|||+|.++|++.
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 6779999999999999999964
No 209
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=92.12 E-value=0.077 Score=51.21 Aligned_cols=24 Identities=21% Similarity=0.411 Sum_probs=20.6
Q ss_pred ccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 388 RNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 388 r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
.-+.|.||+|+|||+|.++|+ ...
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~~~ 189 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-GEE 189 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-SCC
T ss_pred cEEEEECCCCCCHHHHHHHHH-Hhh
Confidence 457799999999999999998 543
No 210
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=92.04 E-value=0.087 Score=51.66 Aligned_cols=26 Identities=19% Similarity=0.241 Sum_probs=22.3
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
....|.|.||||+|||++...|+..+
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 35678899999999999999998654
No 211
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=91.98 E-value=0.064 Score=55.29 Aligned_cols=27 Identities=11% Similarity=-0.046 Sum_probs=22.4
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
+..-+++.||||+|||+||..+|...-
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a 267 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWG 267 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHT
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHH
Confidence 344588999999999999999987653
No 212
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=91.87 E-value=0.17 Score=62.24 Aligned_cols=31 Identities=26% Similarity=0.305 Sum_probs=27.7
Q ss_pred cCCCccEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 384 QAPFRNMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 384 ~~p~r~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
..|..|+||+|++||||+++++..|...|+.
T Consensus 1606 ~~p~G~~LLvGvgGsGkqSltrLaa~i~~~~ 1636 (2695)
T 4akg_A 1606 KQVQGHMMLIGASRTGKTILTRFVAWLNGLK 1636 (2695)
T ss_dssp HSSSEEEEEECTTTSCHHHHHHHHHHHTTCE
T ss_pred cCCCCCEEEECCCCCcHHHHHHHHHHHhCCe
Confidence 3677899999999999999999999988864
No 213
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=91.73 E-value=0.089 Score=55.07 Aligned_cols=26 Identities=27% Similarity=0.314 Sum_probs=22.4
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+...+.|.||+|+|||+|.++|+..+
T Consensus 46 ~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 46 EGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45578899999999999999999654
No 214
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=91.70 E-value=0.11 Score=51.32 Aligned_cols=25 Identities=24% Similarity=0.394 Sum_probs=21.5
Q ss_pred CccEEEecCCCCcHHHHHHHHHHHh
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
...|.|.||||+|||+|..+|+..+
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 4468899999999999999998753
No 215
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=91.55 E-value=0.1 Score=53.83 Aligned_cols=24 Identities=25% Similarity=0.535 Sum_probs=20.9
Q ss_pred ccEEEecCCCCcHHHHHHHHHHHh
Q 014938 388 RNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 388 r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
..++|+||||||||+|+..|+...
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhh
Confidence 469999999999999999887653
No 216
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=91.51 E-value=0.17 Score=56.74 Aligned_cols=48 Identities=23% Similarity=0.234 Sum_probs=33.9
Q ss_pred CccccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHH
Q 014938 357 NGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARK 410 (415)
Q Consensus 357 ~ddvv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~ 410 (415)
...++|-+.....|...+... ....+-|.++|++|+|||+||+.+++.
T Consensus 123 ~~~~vgR~~~~~~l~~~l~~~------~~~~~~v~i~G~gG~GKTtLa~~~~~~ 170 (1249)
T 3sfz_A 123 PVIFVTRKKLVHAIQQKLWKL------NGEPGWVTIYGMAGCGKSVLAAEAVRD 170 (1249)
T ss_dssp CSSCCCCHHHHHHHHHHHHTT------TTSCEEEEEECSTTSSHHHHHHHHTCC
T ss_pred CceeccHHHHHHHHHHHHhhc------cCCCCEEEEEeCCCCCHHHHHHHHhcC
Confidence 345788877777665554321 123456889999999999999988754
No 217
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=91.43 E-value=0.43 Score=43.22 Aligned_cols=54 Identities=20% Similarity=0.116 Sum_probs=30.0
Q ss_pred ccCCCccccCChhHHHHHHHHHHH--HHhhh---hhcCCCccEEEecCCCCcHHHHHHH
Q 014938 353 AIKNNGDIILHPSLQRRIQHLAKA--TANTK---IHQAPFRNMLFYGPPGTGKTMVARE 406 (415)
Q Consensus 353 ~~~~~ddvv~~~~l~~~l~~l~~~--~~~~k---~~~~p~r~vLl~GPPGTGKT~lAka 406 (415)
+...|+++.+++.+.+.+...-.. ..+-. ......+++|+.+|+|+|||+.+-.
T Consensus 23 ~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~ 81 (236)
T 2pl3_A 23 EITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLV 81 (236)
T ss_dssp GCSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHH
T ss_pred ccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHH
Confidence 345677777777766655432000 00000 0001136899999999999986443
No 218
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=91.38 E-value=0.1 Score=54.95 Aligned_cols=28 Identities=21% Similarity=0.305 Sum_probs=23.6
Q ss_pred CCCccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 385 APFRNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 385 ~p~r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
.+...+.+.||+|+|||++.+.|++...
T Consensus 367 ~~G~~~~ivG~sGsGKSTll~~l~g~~~ 394 (582)
T 3b5x_A 367 PQGKTVALVGRSGSGKSTIANLFTRFYD 394 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4556788999999999999999997643
No 219
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=91.36 E-value=0.13 Score=47.08 Aligned_cols=54 Identities=26% Similarity=0.201 Sum_probs=30.8
Q ss_pred ccCCCccccCChhHHHHHHHHHHH--HHhhh---hhcCCCccEEEecCCCCcHHHHHHH
Q 014938 353 AIKNNGDIILHPSLQRRIQHLAKA--TANTK---IHQAPFRNMLFYGPPGTGKTMVARE 406 (415)
Q Consensus 353 ~~~~~ddvv~~~~l~~~l~~l~~~--~~~~k---~~~~p~r~vLl~GPPGTGKT~lAka 406 (415)
+...|+++.+++.+.+.+...-.. ...-. ......+++|+++|+|+|||..+-.
T Consensus 28 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l 86 (237)
T 3bor_A 28 IVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAI 86 (237)
T ss_dssp CCCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHH
T ss_pred ccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHH
Confidence 345688777777777655432100 00000 0001136899999999999986443
No 220
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=91.08 E-value=0.23 Score=48.13 Aligned_cols=54 Identities=22% Similarity=0.173 Sum_probs=30.1
Q ss_pred CCccccCChhHHHHHHHHHHH--HHhhh---hhcCCCccEEEecCCCCcHHHHHHHHHH
Q 014938 356 NNGDIILHPSLQRRIQHLAKA--TANTK---IHQAPFRNMLFYGPPGTGKTMVAREIAR 409 (415)
Q Consensus 356 ~~ddvv~~~~l~~~l~~l~~~--~~~~k---~~~~p~r~vLl~GPPGTGKT~lAkaLA~ 409 (415)
+|+++.+++.+.+.|...-.. ..+-. ......+++|+.+|+|+|||+.+-..+.
T Consensus 9 ~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~ 67 (391)
T 1xti_A 9 GFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATL 67 (391)
T ss_dssp CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHH
T ss_pred ChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHH
Confidence 566666667666655432000 00000 0001136899999999999987654443
No 221
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=90.80 E-value=0.17 Score=47.53 Aligned_cols=24 Identities=25% Similarity=0.374 Sum_probs=21.0
Q ss_pred CccEEEecCCCCcHHHHHHHHHHH
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARK 410 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~ 410 (415)
.-+|++.|++|+|||+|..+|...
T Consensus 39 ~~~I~vvG~~g~GKSSLin~l~~~ 62 (270)
T 1h65_A 39 SLTILVMGKGGVGKSSTVNSIIGE 62 (270)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CeEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999998753
No 222
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=90.73 E-value=0.43 Score=45.43 Aligned_cols=23 Identities=22% Similarity=0.148 Sum_probs=18.7
Q ss_pred ccEEEecCCCCcHHHHHHHHHHH
Q 014938 388 RNMLFYGPPGTGKTMVAREIARK 410 (415)
Q Consensus 388 r~vLl~GPPGTGKT~lAkaLA~~ 410 (415)
+++++.+|+|+|||+.+-..+..
T Consensus 45 ~~~l~~~~TGsGKT~~~~~~~~~ 67 (367)
T 1hv8_A 45 YNIVAQARTGSGKTASFAIPLIE 67 (367)
T ss_dssp SEEEEECCSSSSHHHHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHHHHHH
Confidence 58999999999999987655443
No 223
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=90.59 E-value=0.098 Score=55.09 Aligned_cols=27 Identities=26% Similarity=0.389 Sum_probs=23.1
Q ss_pred CCCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 385 APFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 385 ~p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
.+...+.+.||+|+|||+|.+.|++..
T Consensus 367 ~~G~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 367 PAGKTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp CTTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 455678899999999999999998654
No 224
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=90.56 E-value=0.16 Score=44.79 Aligned_cols=19 Identities=26% Similarity=0.385 Sum_probs=16.2
Q ss_pred ccEEEecCCCCcHHHHHHH
Q 014938 388 RNMLFYGPPGTGKTMVARE 406 (415)
Q Consensus 388 r~vLl~GPPGTGKT~lAka 406 (415)
+++++.+|+|+|||..+-.
T Consensus 39 ~~~li~~~TGsGKT~~~~~ 57 (207)
T 2gxq_A 39 KDLIGQARTGTGKTLAFAL 57 (207)
T ss_dssp CCEEEECCTTSCHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHH
Confidence 6899999999999986443
No 225
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=90.40 E-value=0.49 Score=42.62 Aligned_cols=20 Identities=25% Similarity=0.275 Sum_probs=16.6
Q ss_pred CccEEEecCCCCcHHHHHHH
Q 014938 387 FRNMLFYGPPGTGKTMVARE 406 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAka 406 (415)
.+++++.+|+|+|||+.+-.
T Consensus 57 ~~~~l~~apTGsGKT~~~~l 76 (228)
T 3iuy_A 57 GIDLIVVAQTGTGKTLSYLM 76 (228)
T ss_dssp TCCEEEECCTTSCHHHHHHH
T ss_pred CCCEEEECCCCChHHHHHHH
Confidence 36899999999999986543
No 226
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=90.39 E-value=0.14 Score=46.51 Aligned_cols=22 Identities=27% Similarity=0.465 Sum_probs=19.7
Q ss_pred ccEEEecCCCCcHHHHHHHHHH
Q 014938 388 RNMLFYGPPGTGKTMVAREIAR 409 (415)
Q Consensus 388 r~vLl~GPPGTGKT~lAkaLA~ 409 (415)
-.|+|.|+||+|||+|...+..
T Consensus 38 ~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 38 YRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEEECCTTSSHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4799999999999999998873
No 227
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=90.33 E-value=0.36 Score=45.30 Aligned_cols=22 Identities=18% Similarity=0.413 Sum_probs=18.5
Q ss_pred cEEEecCCCCcHHHHHHHHHHH
Q 014938 389 NMLFYGPPGTGKTMVAREIARK 410 (415)
Q Consensus 389 ~vLl~GPPGTGKT~lAkaLA~~ 410 (415)
+.|+.+|+|+|||.++..++..
T Consensus 130 ~~ll~~~tGsGKT~~~~~~~~~ 151 (282)
T 1rif_A 130 RRILNLPTSAGRSLIQALLARY 151 (282)
T ss_dssp EEEECCCTTSCHHHHHHHHHHH
T ss_pred CeEEEcCCCCCcHHHHHHHHHH
Confidence 5688999999999999777654
No 228
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=90.24 E-value=22 Score=38.87 Aligned_cols=12 Identities=17% Similarity=0.338 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHH
Q 014938 136 HRNLVQQKAQAR 147 (415)
Q Consensus 136 ~r~~~~~~~~~~ 147 (415)
|+++++-|++..
T Consensus 703 r~~Llel~a~s~ 714 (861)
T 2zuo_A 703 RKELLELEAMSM 714 (861)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhh
Confidence 445556665554
No 229
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=90.23 E-value=0.13 Score=50.39 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=19.8
Q ss_pred CccEEEecCCCCcHHHHHHHHH
Q 014938 387 FRNMLFYGPPGTGKTMVAREIA 408 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA 408 (415)
.++|||.||+|+|||++|..|.
T Consensus 147 g~gvli~G~sG~GKStlal~l~ 168 (312)
T 1knx_A 147 GVGVLLTGRSGIGKSECALDLI 168 (312)
T ss_dssp TEEEEEEESSSSSHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHH
Confidence 5789999999999999998875
No 230
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=90.08 E-value=0.16 Score=51.07 Aligned_cols=24 Identities=42% Similarity=0.681 Sum_probs=20.1
Q ss_pred CccEEEecCCCCcHHHHHHHHHHH
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARK 410 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~ 410 (415)
..|++++||||+|||.+.+.|...
T Consensus 53 ~~h~~i~G~tGsGKs~~~~~li~~ 76 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLLRELAYT 76 (437)
T ss_dssp GGCEEEEECTTSSHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHH
Confidence 469999999999999998766543
No 231
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=89.92 E-value=0.22 Score=48.55 Aligned_cols=54 Identities=22% Similarity=0.065 Sum_probs=30.5
Q ss_pred ccCCCccccCChhHHHHHHHHHHH-------HHhhhhhcCCCccEEEecCCCCcHHHHHHHHH
Q 014938 353 AIKNNGDIILHPSLQRRIQHLAKA-------TANTKIHQAPFRNMLFYGPPGTGKTMVAREIA 408 (415)
Q Consensus 353 ~~~~~ddvv~~~~l~~~l~~l~~~-------~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA 408 (415)
....|+++.+++.+.+.+...-.. ...... ...+++|+.+|+|+|||+.+-..+
T Consensus 19 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i--~~~~~~li~a~TGsGKT~~~~~~~ 79 (400)
T 1s2m_A 19 KGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVA--ITGRDILARAKNGTGKTAAFVIPT 79 (400)
T ss_dssp --CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHH--HHTCCEEEECCTTSCHHHHHHHHH
T ss_pred ccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHH--hcCCCEEEECCCCcHHHHHHHHHH
Confidence 345677777777776655431000 000000 012589999999999998665444
No 232
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=89.83 E-value=0.28 Score=44.56 Aligned_cols=53 Identities=13% Similarity=0.083 Sum_probs=28.5
Q ss_pred cccCCCccccCChhHHHHHHHHHHH--HHhhh---hhcCCCccEEEecCCCCcHHHHH
Q 014938 352 EAIKNNGDIILHPSLQRRIQHLAKA--TANTK---IHQAPFRNMLFYGPPGTGKTMVA 404 (415)
Q Consensus 352 ~~~~~~ddvv~~~~l~~~l~~l~~~--~~~~k---~~~~p~r~vLl~GPPGTGKT~lA 404 (415)
.+...|+++.+++.+.+.+...-.. ..+-. ......+++|+.+|+|+|||..+
T Consensus 21 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~ 78 (230)
T 2oxc_A 21 AEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVF 78 (230)
T ss_dssp ---CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHH
T ss_pred CCCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHH
Confidence 3445677777777766655432000 00000 00011368999999999999864
No 233
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=89.69 E-value=0.16 Score=53.23 Aligned_cols=25 Identities=28% Similarity=0.343 Sum_probs=21.5
Q ss_pred CccEEEecCCCCcHHHHHHHHHHHh
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
..-+.|.||.|+|||+|.++|+..+
T Consensus 312 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 312 GEVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4567799999999999999999654
No 234
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=89.67 E-value=0.1 Score=55.02 Aligned_cols=27 Identities=26% Similarity=0.336 Sum_probs=23.0
Q ss_pred CCCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 385 APFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 385 ~p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
.+...+.+.||+|+|||+|.+.|++..
T Consensus 368 ~~G~~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 368 PSGSVTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp CTTCEEEEECCTTSSSTHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 455678899999999999999998654
No 235
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=89.59 E-value=0.14 Score=53.71 Aligned_cols=25 Identities=32% Similarity=0.379 Sum_probs=21.3
Q ss_pred CccEEEecCCCCcHHHHHHHHHHHh
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
..-+.|.||+|||||+|.++|+..+
T Consensus 294 Gei~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 294 GEIIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4467799999999999999998654
No 236
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=89.52 E-value=0.38 Score=54.55 Aligned_cols=43 Identities=23% Similarity=0.315 Sum_probs=30.1
Q ss_pred cCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHH
Q 014938 361 ILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARK 410 (415)
Q Consensus 361 v~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~ 410 (415)
+|-+.....|...+... .+.+-|.++||+|+|||+||+.+++.
T Consensus 131 VGRe~eLeeL~elL~~~-------d~~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLEL-------RPAKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp CCCHHHHHHHHHHHHHC-------CSSCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhcc-------CCCeEEEEEcCCCccHHHHHHHHHHh
Confidence 66666666555443321 12467889999999999999999853
No 237
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=89.46 E-value=0.053 Score=52.86 Aligned_cols=25 Identities=24% Similarity=0.430 Sum_probs=20.4
Q ss_pred CccEEEecCCCCcHHHHHHHHHHHh
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
..-+.|.||||+|||+|.++|+...
T Consensus 173 G~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 173 DKTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC--
T ss_pred CCEEEEECCCCCCHHHHHHHhcccc
Confidence 4568899999999999999997543
No 238
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=89.35 E-value=0.12 Score=54.67 Aligned_cols=27 Identities=30% Similarity=0.519 Sum_probs=23.1
Q ss_pred CCCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 385 APFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 385 ~p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
.+...+.+.||+|+|||++.+.|++..
T Consensus 379 ~~G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 379 KPGQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp CTTCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence 455678899999999999999998654
No 239
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=89.35 E-value=0.13 Score=52.67 Aligned_cols=22 Identities=32% Similarity=0.357 Sum_probs=18.0
Q ss_pred CccEEEecCCCCcHHHHHHHHH
Q 014938 387 FRNMLFYGPPGTGKTMVAREIA 408 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA 408 (415)
.+-.+++||||||||++.+.++
T Consensus 161 ~~v~~I~G~aGsGKTt~I~~~~ 182 (446)
T 3vkw_A 161 AKVVLVDGVPGCGKTKEILSRV 182 (446)
T ss_dssp SEEEEEEECTTSCHHHHHHHHC
T ss_pred ccEEEEEcCCCCCHHHHHHHHh
Confidence 3456789999999999987765
No 240
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=89.27 E-value=0.26 Score=48.96 Aligned_cols=24 Identities=17% Similarity=0.220 Sum_probs=20.6
Q ss_pred CccEEEecCCCCcHHHHHHHHHHH
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARK 410 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~ 410 (415)
.+.|.|.|+||+|||+|..+|+..
T Consensus 179 ~~~V~lvG~~naGKSTLln~L~~~ 202 (364)
T 2qtf_A 179 IPSIGIVGYTNSGKTSLFNSLTGL 202 (364)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHCC
Confidence 446889999999999999999853
No 241
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=89.23 E-value=0.45 Score=42.64 Aligned_cols=19 Identities=32% Similarity=0.244 Sum_probs=16.2
Q ss_pred ccEEEecCCCCcHHHHHHH
Q 014938 388 RNMLFYGPPGTGKTMVARE 406 (415)
Q Consensus 388 r~vLl~GPPGTGKT~lAka 406 (415)
+++++.+|+|+|||..+-.
T Consensus 42 ~~~lv~a~TGsGKT~~~~~ 60 (219)
T 1q0u_A 42 ESMVGQSQTGTGKTHAYLL 60 (219)
T ss_dssp CCEEEECCSSHHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHH
Confidence 6899999999999986443
No 242
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=89.22 E-value=0.22 Score=43.98 Aligned_cols=18 Identities=33% Similarity=0.388 Sum_probs=15.8
Q ss_pred ccEEEecCCCCcHHHHHH
Q 014938 388 RNMLFYGPPGTGKTMVAR 405 (415)
Q Consensus 388 r~vLl~GPPGTGKT~lAk 405 (415)
+++++.+|+|+|||..+-
T Consensus 41 ~~~lv~apTGsGKT~~~~ 58 (206)
T 1vec_A 41 RDILARAKNGTGKSGAYL 58 (206)
T ss_dssp CCEEEECCSSSTTHHHHH
T ss_pred CCEEEECCCCCchHHHHH
Confidence 689999999999997554
No 243
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=89.16 E-value=0.1 Score=51.84 Aligned_cols=25 Identities=20% Similarity=0.263 Sum_probs=22.2
Q ss_pred cEEEecCCCCcHHHHHHHHHHHhCC
Q 014938 389 NMLFYGPPGTGKTMVAREIARKSVW 413 (415)
Q Consensus 389 ~vLl~GPPGTGKT~lAkaLA~~lg~ 413 (415)
-+.|+||+|+|||+|.++|+..++.
T Consensus 62 ~~~lvG~NGaGKStLl~aI~~l~~~ 86 (415)
T 4aby_A 62 FCAFTGETGAGKSIIVDALGLLLGG 86 (415)
T ss_dssp EEEEEESHHHHHHHHTHHHHHHTTC
T ss_pred cEEEECCCCCCHHHHHHHHHHHhCC
Confidence 6779999999999999999887763
No 244
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=89.14 E-value=0.17 Score=50.04 Aligned_cols=22 Identities=18% Similarity=0.368 Sum_probs=19.5
Q ss_pred ccEEEecCCCCcHHHHHHHHHH
Q 014938 388 RNMLFYGPPGTGKTMVAREIAR 409 (415)
Q Consensus 388 r~vLl~GPPGTGKT~lAkaLA~ 409 (415)
-+|++.|++|+|||+|...|..
T Consensus 38 ~~I~vvG~~g~GKSTLln~L~~ 59 (361)
T 2qag_A 38 FTLMVVGESGLGKSTLINSLFL 59 (361)
T ss_dssp ECEEECCCTTSCHHHHHHHHTT
T ss_pred EEEEEEcCCCCCHHHHHHHHhC
Confidence 4789999999999999999753
No 245
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=89.12 E-value=0.2 Score=49.06 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=20.8
Q ss_pred CccEEEecCCCCcHHHHHHHHHH
Q 014938 387 FRNMLFYGPPGTGKTMVAREIAR 409 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~ 409 (415)
..+|||.||+|+|||++|..|..
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEEeCCCCCHHHHHHHHHh
Confidence 57899999999999999998865
No 246
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=88.93 E-value=0.26 Score=53.88 Aligned_cols=57 Identities=16% Similarity=0.152 Sum_probs=33.4
Q ss_pred cCCCccccCChhHHHHHHHHHHHHHhhhhh-----cCCCccEEEecCCCCcHHHHHHHHHHH
Q 014938 354 IKNNGDIILHPSLQRRIQHLAKATANTKIH-----QAPFRNMLFYGPPGTGKTMVAREIARK 410 (415)
Q Consensus 354 ~~~~ddvv~~~~l~~~l~~l~~~~~~~k~~-----~~p~r~vLl~GPPGTGKT~lAkaLA~~ 410 (415)
...|++..+++.+.+.+...-......... .....++++.||+|+|||++...+...
T Consensus 71 ~~~f~~~~l~~~~~~~l~~r~~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 71 INPFTGREFTPKYVDILKIRRELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp BCTTTCSBCCHHHHHHHHHHTTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCccccCCCHHHHHHHHHhhcCChHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 456777777777666554322111000000 011357999999999999977666544
No 247
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=88.86 E-value=0.54 Score=46.01 Aligned_cols=54 Identities=22% Similarity=0.150 Sum_probs=32.6
Q ss_pred ccCCCccccCChhHHHHHHHHHHH-------HHhhhhhcCCCccEEEecCCCCcHHHHHHHHH
Q 014938 353 AIKNNGDIILHPSLQRRIQHLAKA-------TANTKIHQAPFRNMLFYGPPGTGKTMVAREIA 408 (415)
Q Consensus 353 ~~~~~ddvv~~~~l~~~l~~l~~~-------~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA 408 (415)
....|+++.+++.+.+.+...-.. ...... ...+++|+.+|+|+|||+.+-..+
T Consensus 35 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i--~~~~~~lv~a~TGsGKT~~~~~~~ 95 (410)
T 2j0s_A 35 VTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQI--IKGRDVIAQSQSGTGKTATFSISV 95 (410)
T ss_dssp CCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHH--HTTCCEEEECCTTSSHHHHHHHHH
T ss_pred CCCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHH--hCCCCEEEECCCCCCchHHHHHHH
Confidence 345788887788777765432100 000000 113689999999999998665443
No 248
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=88.77 E-value=0.68 Score=42.25 Aligned_cols=19 Identities=26% Similarity=0.268 Sum_probs=16.3
Q ss_pred ccEEEecCCCCcHHHHHHH
Q 014938 388 RNMLFYGPPGTGKTMVARE 406 (415)
Q Consensus 388 r~vLl~GPPGTGKT~lAka 406 (415)
+++|+.+|+|+|||+.+-.
T Consensus 67 ~~~l~~apTGsGKT~~~~l 85 (242)
T 3fe2_A 67 LDMVGVAQTGSGKTLSYLL 85 (242)
T ss_dssp CCEEEEECTTSCHHHHHHH
T ss_pred CCEEEECCCcCHHHHHHHH
Confidence 6899999999999987543
No 249
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=88.67 E-value=0.1 Score=54.88 Aligned_cols=27 Identities=26% Similarity=0.304 Sum_probs=22.7
Q ss_pred CCCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 385 APFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 385 ~p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
.+...+.+.||+|+|||++.+.|++..
T Consensus 365 ~~G~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 365 EKGETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp CTTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 455678899999999999999988654
No 250
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=88.65 E-value=0.2 Score=53.21 Aligned_cols=25 Identities=28% Similarity=0.343 Sum_probs=21.5
Q ss_pred CccEEEecCCCCcHHHHHHHHHHHh
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
..-+.|.||.|+|||+|.+.|+..+
T Consensus 382 Gei~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 382 GEVIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4467799999999999999999654
No 251
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=88.60 E-value=0.24 Score=50.18 Aligned_cols=25 Identities=32% Similarity=0.464 Sum_probs=21.9
Q ss_pred CccEEEecCCCCcHHHHHHHHHHHh
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
...++++||||||||+|+..|++..
T Consensus 175 GQR~lIfg~~g~GKT~Ll~~Ia~~i 199 (427)
T 3l0o_A 175 GQRGMIVAPPKAGKTTILKEIANGI 199 (427)
T ss_dssp TCEEEEEECTTCCHHHHHHHHHHHH
T ss_pred CceEEEecCCCCChhHHHHHHHHHH
Confidence 4579999999999999999998754
No 252
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=88.60 E-value=0.2 Score=53.25 Aligned_cols=26 Identities=31% Similarity=0.324 Sum_probs=22.1
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+..-+.|.||+|+|||+|.+.|+..+
T Consensus 116 ~Ge~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 116 DGMVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhCCC
Confidence 34567899999999999999998654
No 253
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=88.56 E-value=0.38 Score=47.20 Aligned_cols=23 Identities=17% Similarity=0.486 Sum_probs=20.3
Q ss_pred CccEEEecCCCCcHHHHHHHHHH
Q 014938 387 FRNMLFYGPPGTGKTMVAREIAR 409 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~ 409 (415)
...|+|.|+||+|||+|...|+.
T Consensus 167 ~~~v~lvG~~gvGKSTLin~L~~ 189 (357)
T 2e87_A 167 IPTVVIAGHPNVGKSTLLKALTT 189 (357)
T ss_dssp SCEEEEECSTTSSHHHHHHHHCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45799999999999999999874
No 254
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=88.46 E-value=0.24 Score=52.65 Aligned_cols=25 Identities=24% Similarity=0.300 Sum_probs=21.4
Q ss_pred CccEEEecCCCCcHHHHHHHHHHHh
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
..-+.|.||+|+|||+|.+.|+..+
T Consensus 103 Gei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 103 GQVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCChHHHHHHHHhcCC
Confidence 4457799999999999999999654
No 255
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=88.41 E-value=0.39 Score=44.77 Aligned_cols=24 Identities=21% Similarity=0.354 Sum_probs=21.2
Q ss_pred CccEEEecCCCCcHHHHHHHHHHH
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARK 410 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~ 410 (415)
.-+|+|.|++|+|||+|..+|...
T Consensus 36 ~~~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 36 SMTVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTS
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999998754
No 256
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=88.33 E-value=0.46 Score=44.99 Aligned_cols=24 Identities=17% Similarity=0.216 Sum_probs=20.7
Q ss_pred CccEEEecCCCCcHHHHHHHHHHH
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARK 410 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~ 410 (415)
.-+|+|.|+||+|||+|...+...
T Consensus 155 ~~~i~i~G~~~~GKssli~~~~~~ 178 (332)
T 2wkq_A 155 LIKCVVVGDGAVGKTCLLISYTTN 178 (332)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCChHHHHHHHHhC
Confidence 458999999999999999888753
No 257
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=88.26 E-value=0.23 Score=50.22 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=20.7
Q ss_pred ccEEEecCCCCcHHHHHHHHHHH
Q 014938 388 RNMLFYGPPGTGKTMVAREIARK 410 (415)
Q Consensus 388 r~vLl~GPPGTGKT~lAkaLA~~ 410 (415)
..|.|.|+||+|||+|..+|...
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~ 203 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNK 203 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS
T ss_pred ceEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999754
No 258
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=88.03 E-value=0.46 Score=50.34 Aligned_cols=23 Identities=17% Similarity=0.303 Sum_probs=20.5
Q ss_pred ccEEEecCCCCcHHHHHHHHHHH
Q 014938 388 RNMLFYGPPGTGKTMVAREIARK 410 (415)
Q Consensus 388 r~vLl~GPPGTGKT~lAkaLA~~ 410 (415)
.-+.+.||+|+|||+|.++|++.
T Consensus 46 p~iaIvG~nGsGKSTLL~~I~Gl 68 (608)
T 3szr_A 46 PAIAVIGDQSSGKSSVLEALSGV 68 (608)
T ss_dssp CCEECCCCTTSCHHHHHHHHHSC
T ss_pred CeEEEECCCCChHHHHHHHHhCC
Confidence 35999999999999999999864
No 259
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=88.02 E-value=0.14 Score=54.07 Aligned_cols=28 Identities=25% Similarity=0.300 Sum_probs=23.3
Q ss_pred CCCccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 385 APFRNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 385 ~p~r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
.+..-+.+.||+|+|||++.+.|++...
T Consensus 367 ~~Ge~~~ivG~sGsGKSTll~~l~g~~~ 394 (587)
T 3qf4_A 367 KPGSLVAVLGETGSGKSTLMNLIPRLID 394 (587)
T ss_dssp CTTCEEEEECSSSSSHHHHHHTTTTSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCcc
Confidence 4556788999999999999999986543
No 260
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=87.85 E-value=1 Score=43.98 Aligned_cols=50 Identities=20% Similarity=0.222 Sum_probs=29.6
Q ss_pred ccCCCccccCChhHHHHHHHHHHH-------HHhhhhhcCCCccEEEecCCCCcHHHHH
Q 014938 353 AIKNNGDIILHPSLQRRIQHLAKA-------TANTKIHQAPFRNMLFYGPPGTGKTMVA 404 (415)
Q Consensus 353 ~~~~~ddvv~~~~l~~~l~~l~~~-------~~~~k~~~~p~r~vLl~GPPGTGKT~lA 404 (415)
+...|+++.+++.+.+.+...-.. ...... ...+++|+.+|+|+|||+.+
T Consensus 13 ~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i--~~~~~~lv~a~TGsGKT~~~ 69 (417)
T 2i4i_A 13 HIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPII--KEKRDLMACAQTGSGKTAAF 69 (417)
T ss_dssp CCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHH--HTTCCEEEECCTTSCHHHHH
T ss_pred ccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHH--ccCCCEEEEcCCCCHHHHHH
Confidence 345677777777776655432100 000000 12469999999999999844
No 261
>2olr_A Phosphoenolpyruvate carboxykinase; carbon dioxide, lyase; HET: ATP; 1.60A {Escherichia coli K12} SCOP: c.91.1.1 c.109.1.1 PDB: 1k3c_A* 1k3d_A* 1aq2_A* 2olq_A* 1os1_A* 2pxz_X* 1ayl_A* 2py7_X* 1oen_A 1ylh_A* 1ygg_A*
Probab=87.71 E-value=0.22 Score=52.09 Aligned_cols=19 Identities=37% Similarity=0.592 Sum_probs=16.5
Q ss_pred CccEEEecCCCCcHHHHHH
Q 014938 387 FRNMLFYGPPGTGKTMVAR 405 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAk 405 (415)
...++|+|++|||||+|+.
T Consensus 241 g~~~lffGlSGtGKTTLs~ 259 (540)
T 2olr_A 241 GDVAVFFGLSGTGKTTLST 259 (540)
T ss_dssp SCEEEEECSTTSSHHHHHC
T ss_pred CCEEEEEccCCCCHHHHhc
Confidence 4679999999999999873
No 262
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=87.69 E-value=0.69 Score=48.18 Aligned_cols=46 Identities=26% Similarity=0.174 Sum_probs=30.3
Q ss_pred ccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 360 IILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 360 vv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+.+.+.....+..+...... ..+++|+++|+|+|||..+-.++..+
T Consensus 177 ~~lr~~Q~~ai~~~~~~~~~------~~~~~ll~~~TGsGKT~~~~~~~~~l 222 (590)
T 3h1t_A 177 YSPRYYQQIAINRAVQSVLQ------GKKRSLITMATGTGKTVVAFQISWKL 222 (590)
T ss_dssp --CCHHHHHHHHHHHHHHHT------TCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHhc------CCCceEEEecCCCChHHHHHHHHHHH
Confidence 44555555566655544321 23679999999999999988777654
No 263
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=87.46 E-value=0.07 Score=47.14 Aligned_cols=22 Identities=27% Similarity=0.504 Sum_probs=18.7
Q ss_pred CccEEEecCCCCcHHHHHHHHH
Q 014938 387 FRNMLFYGPPGTGKTMVAREIA 408 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA 408 (415)
.-+|+|.|+||+|||+|...|.
T Consensus 33 ~~ki~vvG~~~~GKSsli~~l~ 54 (199)
T 3l0i_B 33 LFKLLLIGDSGVGKSCLLLRFA 54 (199)
T ss_dssp EEEEEEECCTTSCCTTTTTSSB
T ss_pred ceEEEEECCCCCCHHHHHHHHh
Confidence 3489999999999999987654
No 264
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=87.42 E-value=0.24 Score=52.62 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=20.3
Q ss_pred cEEEecCCCCcHHHHHHHHHHHh
Q 014938 389 NMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 389 ~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
-+.|.||.|+|||+|.++|+..+
T Consensus 380 iv~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 380 ILVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp EEEEESCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 37799999999999999999654
No 265
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=87.07 E-value=1.2 Score=43.39 Aligned_cols=52 Identities=23% Similarity=0.135 Sum_probs=30.2
Q ss_pred cCCCccccCChhHHHHHHHHHHH-------HHhhhhhcCCCccEEEecCCCCcHHHHHHHH
Q 014938 354 IKNNGDIILHPSLQRRIQHLAKA-------TANTKIHQAPFRNMLFYGPPGTGKTMVAREI 407 (415)
Q Consensus 354 ~~~~ddvv~~~~l~~~l~~l~~~-------~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaL 407 (415)
...|+++.+++.+.+.+...-.. ...... ...+++|+.+|+|+|||+.+-..
T Consensus 39 ~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~--~~~~~~lv~a~TGsGKT~~~~~~ 97 (414)
T 3eiq_A 39 VDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPC--IKGYDVIAQAQSGTGKTATFAIS 97 (414)
T ss_dssp CCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHH--HTTCCEEECCCSCSSSHHHHHHH
T ss_pred hcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHH--hCCCCEEEECCCCCcccHHHHHH
Confidence 45677777777776655432000 000000 11358999999999999875433
No 266
>1ii2_A Phosphoenolpyruvate carboxykinase; phosphate binding loop, lyase; 2.00A {Trypanosoma cruzi} SCOP: c.91.1.1 c.109.1.1
Probab=86.91 E-value=0.26 Score=51.43 Aligned_cols=18 Identities=39% Similarity=0.630 Sum_probs=16.2
Q ss_pred CccEEEecCCCCcHHHHH
Q 014938 387 FRNMLFYGPPGTGKTMVA 404 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lA 404 (415)
...++|+|++|||||+|+
T Consensus 213 g~~~~ffGlSGtGKTTLs 230 (524)
T 1ii2_A 213 GDVTVFFGLSGTGKTTLS 230 (524)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CCEEEEEccCCcchhhhh
Confidence 468999999999999986
No 267
>1ytm_A Phosphoenolpyruvate carboxykinase [ATP], phosphoenolpyruvate; domain closure, nucleotide binding; HET: ATP; 2.20A {Anaerobiospirillum succiniciproducens} PDB: 1yvy_A
Probab=86.79 E-value=0.27 Score=51.43 Aligned_cols=17 Identities=41% Similarity=0.851 Sum_probs=15.7
Q ss_pred ccEEEecCCCCcHHHHH
Q 014938 388 RNMLFYGPPGTGKTMVA 404 (415)
Q Consensus 388 r~vLl~GPPGTGKT~lA 404 (415)
..++|+|++|||||+|+
T Consensus 236 ~~~~ffGlSGtGKTTLs 252 (532)
T 1ytm_A 236 NTAIFFGLSGTGKTTLS 252 (532)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred eEEEEEecCCCCHHHHh
Confidence 58999999999999987
No 268
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=86.56 E-value=0.35 Score=49.81 Aligned_cols=22 Identities=18% Similarity=0.442 Sum_probs=18.5
Q ss_pred cEEEecCCCCcHHHHHHHHHHH
Q 014938 389 NMLFYGPPGTGKTMVAREIARK 410 (415)
Q Consensus 389 ~vLl~GPPGTGKT~lAkaLA~~ 410 (415)
.|+|.|+||+|||+|..+|...
T Consensus 235 kV~ivG~~nvGKSSLln~L~~~ 256 (476)
T 3gee_A 235 STVIAGKPNAGKSTLLNTLLGQ 256 (476)
T ss_dssp EEEEECCTTSSHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5999999999999999988654
No 269
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=86.54 E-value=0.39 Score=49.31 Aligned_cols=22 Identities=18% Similarity=0.403 Sum_probs=20.2
Q ss_pred cEEEecCCCCcHHHHHHHHHHH
Q 014938 389 NMLFYGPPGTGKTMVAREIARK 410 (415)
Q Consensus 389 ~vLl~GPPGTGKT~lAkaLA~~ 410 (415)
+|+|.|+||+|||+|..+|...
T Consensus 226 kV~ivG~~nvGKSSLln~L~~~ 247 (462)
T 3geh_A 226 KVAIVGRPNVGKSSLLNAWSQS 247 (462)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHhCC
Confidence 5999999999999999999865
No 270
>1j3b_A ATP-dependent phosphoenolpyruvate carboxykinase; adenosine triphosphate, T thermophilus; 2.00A {Thermus thermophilus} SCOP: c.91.1.1 c.109.1.1 PDB: 1xkv_A* 2pc9_A*
Probab=86.44 E-value=0.23 Score=51.92 Aligned_cols=19 Identities=37% Similarity=0.592 Sum_probs=16.1
Q ss_pred CccEEEecCCCCcHHHHHH
Q 014938 387 FRNMLFYGPPGTGKTMVAR 405 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAk 405 (415)
...++|+||+|||||+|+.
T Consensus 225 g~~~~ffGlSGtGKTtLs~ 243 (529)
T 1j3b_A 225 GDVAVFFGLSGTGKTTLST 243 (529)
T ss_dssp CCEEEEEECTTSCHHHHTC
T ss_pred CcEEEEEccccCChhhHhh
Confidence 3578899999999999873
No 271
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=86.32 E-value=0.36 Score=54.10 Aligned_cols=24 Identities=38% Similarity=0.560 Sum_probs=20.9
Q ss_pred CCccEEEecCCCCcHHHHHHHHHH
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIAR 409 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~ 409 (415)
+...+.|.||.|+|||+|.++|+.
T Consensus 460 ~Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 460 RARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 445688999999999999999984
No 272
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=86.26 E-value=0.35 Score=45.68 Aligned_cols=23 Identities=30% Similarity=0.574 Sum_probs=20.3
Q ss_pred ccEEEecCCCCcHHHHHHHHHHH
Q 014938 388 RNMLFYGPPGTGKTMVAREIARK 410 (415)
Q Consensus 388 r~vLl~GPPGTGKT~lAkaLA~~ 410 (415)
..++|.|+||+|||+|..+|...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~ 122 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGK 122 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT
T ss_pred hheEEeCCCCCCHHHHHHHHhcc
Confidence 47999999999999999998753
No 273
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=86.00 E-value=0.34 Score=45.17 Aligned_cols=19 Identities=32% Similarity=0.445 Sum_probs=16.3
Q ss_pred ccEEEecCCCCcHHHHHHH
Q 014938 388 RNMLFYGPPGTGKTMVARE 406 (415)
Q Consensus 388 r~vLl~GPPGTGKT~lAka 406 (415)
+++|+.+|+|+|||+.+-.
T Consensus 92 ~~~lv~a~TGsGKT~~~~l 110 (262)
T 3ly5_A 92 RDLLAAAKTGSGKTLAFLI 110 (262)
T ss_dssp CCCEECCCTTSCHHHHHHH
T ss_pred CcEEEEccCCCCchHHHHH
Confidence 6899999999999986543
No 274
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=85.83 E-value=1.1 Score=43.21 Aligned_cols=50 Identities=24% Similarity=0.180 Sum_probs=29.4
Q ss_pred cCCCccccCChhHHHHHHHHHHH-------HHhhhhhcCCCccEEEecCCCCcHHHHHH
Q 014938 354 IKNNGDIILHPSLQRRIQHLAKA-------TANTKIHQAPFRNMLFYGPPGTGKTMVAR 405 (415)
Q Consensus 354 ~~~~ddvv~~~~l~~~l~~l~~~-------~~~~k~~~~p~r~vLl~GPPGTGKT~lAk 405 (415)
...|+++.+++.+.+.+...-.. ...... ...+++|+.+|+|+|||+.+-
T Consensus 20 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i--~~~~~~lv~~~TGsGKT~~~~ 76 (394)
T 1fuu_A 20 VYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPI--IEGHDVLAQAQSGTGKTGTFS 76 (394)
T ss_dssp CCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHH--HHTCCEEECCCSSHHHHHHHH
T ss_pred cCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHH--hCCCCEEEECCCCChHHHHHH
Confidence 44677777777776655432100 000000 012589999999999998743
No 275
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=85.82 E-value=1.1 Score=42.99 Aligned_cols=44 Identities=18% Similarity=0.271 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHhhhhhcCCCccEEEecC-CCCcHHHHHHHHHHHh
Q 014938 367 QRRIQHLAKATANTKIHQAPFRNMLFYGP-PGTGKTMVAREIARKS 411 (415)
Q Consensus 367 ~~~l~~l~~~~~~~k~~~~p~r~vLl~GP-PGTGKT~lAkaLA~~l 411 (415)
.+.++.+........ ...+.+-|++.|+ ||+|||++|..||..+
T Consensus 85 ~Ea~r~lrt~l~~~~-~~~~~kvI~vts~kgG~GKTtva~nLA~~l 129 (299)
T 3cio_A 85 VEAVRALRTSLHFAM-METENNILMITGATPDSGKTFVSSTLAAVI 129 (299)
T ss_dssp HHHHHHHHHHHHHHT-SSCSCCEEEEEESSSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc-cCCCCeEEEEECCCCCCChHHHHHHHHHHH
Confidence 345555544332211 1234567778887 8999999999988764
No 276
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=85.56 E-value=0.46 Score=48.32 Aligned_cols=23 Identities=22% Similarity=0.463 Sum_probs=19.5
Q ss_pred ccEEEecCCCCcHHHHHHHHHHH
Q 014938 388 RNMLFYGPPGTGKTMVAREIARK 410 (415)
Q Consensus 388 r~vLl~GPPGTGKT~lAkaLA~~ 410 (415)
+++|++||+|+|||..+-.++..
T Consensus 129 ~~~ll~~~tGsGKT~~~~~~~~~ 151 (510)
T 2oca_A 129 RRRILNLPTSAGRSLIQALLARY 151 (510)
T ss_dssp SEEEEECCSTTTHHHHHHHHHHH
T ss_pred CCcEEEeCCCCCHHHHHHHHHHH
Confidence 48999999999999998766654
No 277
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=85.45 E-value=0.47 Score=49.39 Aligned_cols=23 Identities=17% Similarity=0.398 Sum_probs=20.6
Q ss_pred CccEEEecCCCCcHHHHHHHHHH
Q 014938 387 FRNMLFYGPPGTGKTMVAREIAR 409 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~ 409 (415)
..|+|+.|++|+|||++.++|..
T Consensus 167 ~pHlLIaG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 167 MPHLLVAGTTGSGASVGVNAMIL 189 (512)
T ss_dssp SCSEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 35999999999999999998865
No 278
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=85.19 E-value=1.3 Score=41.77 Aligned_cols=43 Identities=14% Similarity=0.330 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHhhhhhcCCCccEEEecC-CCCcHHHHHHHHHHHh
Q 014938 368 RRIQHLAKATANTKIHQAPFRNMLFYGP-PGTGKTMVAREIARKS 411 (415)
Q Consensus 368 ~~l~~l~~~~~~~k~~~~p~r~vLl~GP-PGTGKT~lAkaLA~~l 411 (415)
+.++.+........ ...+.+-|++.|+ ||+|||++|..||..+
T Consensus 64 Ea~r~lrt~l~~~~-~~~~~kvI~vts~kgG~GKTt~a~nLA~~l 107 (271)
T 3bfv_A 64 EKFRGIRSNIMFAN-PDSAVQSIVITSEAPGAGKSTIAANLAVAY 107 (271)
T ss_dssp HHHHHHHHHHHHSS-TTCCCCEEEEECSSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhc-cCCCCeEEEEECCCCCCcHHHHHHHHHHHH
Confidence 44554444333221 1234566778877 8999999999888765
No 279
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=84.88 E-value=0.58 Score=42.91 Aligned_cols=18 Identities=28% Similarity=0.466 Sum_probs=15.7
Q ss_pred ccEEEecCCCCcHHHHHH
Q 014938 388 RNMLFYGPPGTGKTMVAR 405 (415)
Q Consensus 388 r~vLl~GPPGTGKT~lAk 405 (415)
+++|+.+|+|+|||+.+-
T Consensus 61 ~~~l~~a~TGsGKT~~~~ 78 (253)
T 1wrb_A 61 RDIMACAQTGSGKTAAFL 78 (253)
T ss_dssp CCEEEECCTTSSHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 689999999999998644
No 280
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=84.81 E-value=0.6 Score=46.95 Aligned_cols=25 Identities=28% Similarity=0.284 Sum_probs=21.2
Q ss_pred ccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 388 RNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 388 r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
.++|+++|+|+|||..+-.++..++
T Consensus 109 ~~~ll~~~TGsGKT~~~l~~i~~~~ 133 (472)
T 2fwr_A 109 KRGCIVLPTGSGKTHVAMAAINELS 133 (472)
T ss_dssp TEEEEECCTTSCHHHHHHHHHHHHC
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHcC
Confidence 3699999999999999888776654
No 281
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=84.55 E-value=0.54 Score=42.82 Aligned_cols=17 Identities=41% Similarity=0.733 Sum_probs=15.3
Q ss_pred ccEEEecCCCCcHHHHH
Q 014938 388 RNMLFYGPPGTGKTMVA 404 (415)
Q Consensus 388 r~vLl~GPPGTGKT~lA 404 (415)
+++|+.+|+|+|||+.+
T Consensus 67 ~~~l~~a~TGsGKT~~~ 83 (245)
T 3dkp_A 67 RELLASAPTGSGKTLAF 83 (245)
T ss_dssp CCEEEECCTTSCHHHHH
T ss_pred CCEEEECCCCCcHHHHH
Confidence 68999999999999864
No 282
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=84.50 E-value=0.55 Score=51.53 Aligned_cols=25 Identities=28% Similarity=0.339 Sum_probs=21.4
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHH
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARK 410 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~ 410 (415)
+.+-++|.||.|+|||++.+.|+..
T Consensus 606 ~g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 606 QRRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCChHHHHHHHHHH
Confidence 3456889999999999999999864
No 283
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=84.49 E-value=0.46 Score=47.13 Aligned_cols=24 Identities=17% Similarity=0.372 Sum_probs=21.0
Q ss_pred CccEEEecCCCCcHHHHHHHHHHH
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARK 410 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~ 410 (415)
...|||.|++|+|||++++.|--.
T Consensus 33 ~~killlG~~~SGKST~~kq~~i~ 56 (362)
T 1zcb_A 33 LVKILLLGAGESGKSTFLKQMRII 56 (362)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ccEEEEECCCCCcHHHHHHHHHHH
Confidence 468999999999999999988643
No 284
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=84.46 E-value=0.62 Score=43.06 Aligned_cols=50 Identities=20% Similarity=0.116 Sum_probs=28.8
Q ss_pred cCCCccccCChhHHHHHHHHHHH-------HHhhhhhcCCCccEEEecCCCCcHHHHHH
Q 014938 354 IKNNGDIILHPSLQRRIQHLAKA-------TANTKIHQAPFRNMLFYGPPGTGKTMVAR 405 (415)
Q Consensus 354 ~~~~ddvv~~~~l~~~l~~l~~~-------~~~~k~~~~p~r~vLl~GPPGTGKT~lAk 405 (415)
...|+++.+++.+.+.+...-.. ...... ...+++|+.+|+|+|||+.+-
T Consensus 42 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i--~~~~~~lv~a~TGsGKT~~~~ 98 (249)
T 3ber_A 42 TKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLA--LQGRDIIGLAETGSGKTGAFA 98 (249)
T ss_dssp HCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHH--HTTCCEEEECCTTSCHHHHHH
T ss_pred cCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHH--hCCCCEEEEcCCCCCchhHhH
Confidence 44677776666666655432100 000000 113689999999999998644
No 285
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=84.20 E-value=0.36 Score=48.92 Aligned_cols=24 Identities=21% Similarity=0.419 Sum_probs=20.6
Q ss_pred CccEEEecCCCCcHHHHHHHHHHH
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARK 410 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~ 410 (415)
...|.|.||||+|||+|.++|+..
T Consensus 157 g~~VgLVG~~gAGKSTLL~~Lsg~ 180 (416)
T 1udx_A 157 IADVGLVGYPNAGKSSLLAAMTRA 180 (416)
T ss_dssp SCSEEEECCGGGCHHHHHHHHCSS
T ss_pred CCEEEEECCCCCcHHHHHHHHHcC
Confidence 346889999999999999998753
No 286
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=83.66 E-value=0.42 Score=46.44 Aligned_cols=20 Identities=25% Similarity=0.458 Sum_probs=18.1
Q ss_pred cEEEecCCCCcHHHHHHHHH
Q 014938 389 NMLFYGPPGTGKTMVAREIA 408 (415)
Q Consensus 389 ~vLl~GPPGTGKT~lAkaLA 408 (415)
.|+|.|+||+|||+|...|.
T Consensus 167 kI~ivG~~~vGKSsLl~~l~ 186 (329)
T 3o47_A 167 RILMVGLDAAGKTTILYKLK 186 (329)
T ss_dssp EEEEEESTTSSHHHHHHHTC
T ss_pred eEEEECCCCccHHHHHHHHh
Confidence 69999999999999998774
No 287
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=83.57 E-value=0.59 Score=51.01 Aligned_cols=23 Identities=30% Similarity=0.378 Sum_probs=20.5
Q ss_pred ccEEEecCCCCcHHHHHHHHHHH
Q 014938 388 RNMLFYGPPGTGKTMVAREIARK 410 (415)
Q Consensus 388 r~vLl~GPPGTGKT~lAkaLA~~ 410 (415)
.-++|.||+|+|||++.+.|+..
T Consensus 577 ~i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 577 ELVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp CEEEEESCSSSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHHhh
Confidence 46789999999999999999864
No 288
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=83.41 E-value=0.56 Score=46.21 Aligned_cols=21 Identities=29% Similarity=0.471 Sum_probs=17.1
Q ss_pred ccEEEecCCCCcHHHHHHHHH
Q 014938 388 RNMLFYGPPGTGKTMVAREIA 408 (415)
Q Consensus 388 r~vLl~GPPGTGKT~lAkaLA 408 (415)
+++|+.+|+|+|||+++-..+
T Consensus 37 ~~~lv~apTGsGKT~~~l~~~ 57 (414)
T 3oiy_A 37 KSFTMVAPTGVGKTTFGMMTA 57 (414)
T ss_dssp CCEECCSCSSSSHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHH
Confidence 589999999999999554443
No 289
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=83.39 E-value=1.9 Score=45.48 Aligned_cols=24 Identities=17% Similarity=0.321 Sum_probs=13.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHH
Q 014938 114 KVHYEAIQSQVDVERQRKLAEEHR 137 (415)
Q Consensus 114 ~~e~~~~~~~~~~~~~~~~~ee~r 137 (415)
..+.+.+.+|++-++.+.+.|+.|
T Consensus 299 ~~e~qqm~~~a~e~~~~~~~e~~~ 322 (575)
T 2i1j_A 299 TIDVQQMKAQAREEKLAKQAQREK 322 (575)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555666666666666433
No 290
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=82.93 E-value=0.83 Score=45.31 Aligned_cols=17 Identities=29% Similarity=0.641 Sum_probs=14.0
Q ss_pred ccEEEecCCCCcHHHHH
Q 014938 388 RNMLFYGPPGTGKTMVA 404 (415)
Q Consensus 388 r~vLl~GPPGTGKT~lA 404 (415)
..|+-||.+|+|||+.-
T Consensus 82 ~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 82 GTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred ceEEEECCCCCCcceEe
Confidence 35777999999999864
No 291
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=82.90 E-value=1.1 Score=46.42 Aligned_cols=22 Identities=18% Similarity=0.270 Sum_probs=19.8
Q ss_pred ccEEEecCCCCcHHHHHHHHHH
Q 014938 388 RNMLFYGPPGTGKTMVAREIAR 409 (415)
Q Consensus 388 r~vLl~GPPGTGKT~lAkaLA~ 409 (415)
-.|+|.|+||+|||+|...+..
T Consensus 42 ~kV~lvG~~~vGKSSLl~~l~~ 63 (535)
T 3dpu_A 42 IKVHLIGDGMAGKTSLLKQLIG 63 (535)
T ss_dssp EEEEEESSSCSSHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4799999999999999999874
No 292
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=82.68 E-value=0.57 Score=45.84 Aligned_cols=22 Identities=23% Similarity=0.329 Sum_probs=20.4
Q ss_pred ccEEEecCCCCcHHHHHHHHHH
Q 014938 388 RNMLFYGPPGTGKTMVAREIAR 409 (415)
Q Consensus 388 r~vLl~GPPGTGKT~lAkaLA~ 409 (415)
..|++.|++|+|||+|..+|..
T Consensus 35 p~I~vvG~~~sGKSSLln~l~g 56 (360)
T 3t34_A 35 PAIAVVGGQSSGKSSVLESIVG 56 (360)
T ss_dssp CEEEEECBTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 3899999999999999999986
No 293
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=82.49 E-value=0.34 Score=54.29 Aligned_cols=26 Identities=19% Similarity=0.358 Sum_probs=21.9
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+..-+.|.||.|+|||+|.+.|+..+
T Consensus 698 ~GeivaIiGpNGSGKSTLLklLaGll 723 (986)
T 2iw3_A 698 LSSRIAVIGPNGAGKSTLINVLTGEL 723 (986)
T ss_dssp TTCEEEECSCCCHHHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34567899999999999999998654
No 294
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=82.47 E-value=0.83 Score=43.34 Aligned_cols=26 Identities=19% Similarity=0.359 Sum_probs=21.4
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
..+-|.++|-.|+|||++|..||..+
T Consensus 40 ~~~vI~v~~KGGvGKTT~a~nLA~~L 65 (307)
T 3end_A 40 GAKVFAVYGKGGIGKSTTSSNLSAAF 65 (307)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCccHHHHHHHHHHHH
Confidence 34567788999999999999888765
No 295
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=82.22 E-value=0.91 Score=44.43 Aligned_cols=16 Identities=31% Similarity=0.609 Sum_probs=13.7
Q ss_pred cEEEecCCCCcHHHHH
Q 014938 389 NMLFYGPPGTGKTMVA 404 (415)
Q Consensus 389 ~vLl~GPPGTGKT~lA 404 (415)
.|+-||.+|+|||+.-
T Consensus 80 tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 80 TIFAYGQTSSGKTHTM 95 (325)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCCceEe
Confidence 5777999999999864
No 296
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=81.98 E-value=0.85 Score=48.15 Aligned_cols=27 Identities=37% Similarity=0.346 Sum_probs=23.4
Q ss_pred CccEEEecCCCCcHHHHHHHHHHHhCC
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARKSVW 413 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~lg~ 413 (415)
...++++||+|||||.|+..|++..+.
T Consensus 232 Gqr~~Ifgg~g~GKT~L~~~ia~~~~~ 258 (600)
T 3vr4_A 232 GGAAAVPGPFGAGKTVVQHQIAKWSDV 258 (600)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHSSC
T ss_pred CCEEeeecCCCccHHHHHHHHHhccCC
Confidence 457999999999999999999987653
No 297
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=81.85 E-value=0.46 Score=54.78 Aligned_cols=28 Identities=18% Similarity=0.239 Sum_probs=23.6
Q ss_pred CCCccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 385 APFRNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 385 ~p~r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
.|...+.+.||+|+|||+|.+.|++...
T Consensus 414 ~~G~~~~ivG~sGsGKSTl~~ll~g~~~ 441 (1284)
T 3g5u_A 414 KSGQTVALVGNSGCGKSTTVQLMQRLYD 441 (1284)
T ss_dssp CTTCEEEEECCSSSSHHHHHHHTTTSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4566788999999999999999986543
No 298
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=81.82 E-value=0.96 Score=44.60 Aligned_cols=17 Identities=35% Similarity=0.686 Sum_probs=14.1
Q ss_pred ccEEEecCCCCcHHHHH
Q 014938 388 RNMLFYGPPGTGKTMVA 404 (415)
Q Consensus 388 r~vLl~GPPGTGKT~lA 404 (415)
-.|+-||.+|+|||+.-
T Consensus 85 ~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 85 ATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp EEEEEESSTTSSHHHHH
T ss_pred eeEEEecccCCCceEee
Confidence 35777999999999864
No 299
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=81.75 E-value=1.5 Score=43.90 Aligned_cols=51 Identities=16% Similarity=0.184 Sum_probs=31.2
Q ss_pred cccCCCccccCChhHHHHHHHHHH-------HHHhhhhhcCCCccEEEecCCCCcHHHHH
Q 014938 352 EAIKNNGDIILHPSLQRRIQHLAK-------ATANTKIHQAPFRNMLFYGPPGTGKTMVA 404 (415)
Q Consensus 352 ~~~~~~ddvv~~~~l~~~l~~l~~-------~~~~~k~~~~p~r~vLl~GPPGTGKT~lA 404 (415)
.+...|++..+++.+.+.|...-. ....... ...+++|+.+|+|+|||+.+
T Consensus 53 ~~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i--~~g~d~i~~a~TGsGKT~a~ 110 (434)
T 2db3_A 53 QPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVI--SSGRDLMACAQTGSGKTAAF 110 (434)
T ss_dssp CCCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHH--HTTCCEEEECCTTSSHHHHH
T ss_pred CCcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHH--hcCCCEEEECCCCCCchHHH
Confidence 455678888887877766543100 0000000 12479999999999999843
No 300
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=81.63 E-value=0.51 Score=54.55 Aligned_cols=28 Identities=18% Similarity=0.252 Sum_probs=24.0
Q ss_pred CCCccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 385 APFRNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 385 ~p~r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
.|...+.++||+|+|||++++.|.+...
T Consensus 442 ~~G~~vaivG~sGsGKSTll~ll~~~~~ 469 (1321)
T 4f4c_A 442 NAGQTVALVGSSGCGKSTIISLLLRYYD 469 (1321)
T ss_dssp CTTCEEEEEECSSSCHHHHHHHHTTSSC
T ss_pred cCCcEEEEEecCCCcHHHHHHHhccccc
Confidence 5567888999999999999999987654
No 301
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=81.62 E-value=0.97 Score=44.98 Aligned_cols=16 Identities=31% Similarity=0.609 Sum_probs=13.7
Q ss_pred cEEEecCCCCcHHHHH
Q 014938 389 NMLFYGPPGTGKTMVA 404 (415)
Q Consensus 389 ~vLl~GPPGTGKT~lA 404 (415)
.|+-||.+|+|||+.-
T Consensus 87 tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 87 TIFAYGQTSSGKTHTM 102 (365)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEeecCCCCCCceEE
Confidence 5677999999999964
No 302
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=81.30 E-value=0.87 Score=47.85 Aligned_cols=27 Identities=26% Similarity=0.298 Sum_probs=23.3
Q ss_pred CccEEEecCCCCcHHHHHHHHHHHhCC
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARKSVW 413 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~lg~ 413 (415)
...++++||+|||||.++..|++..+.
T Consensus 221 Gqr~~Ifg~~g~GKT~l~~~ia~~~~~ 247 (578)
T 3gqb_A 221 GGTAAIPGPFGSGKSVTQQSLAKWSNA 247 (578)
T ss_dssp TCEEEECCCTTSCHHHHHHHHHHHSSC
T ss_pred CCEEeeeCCCCccHHHHHHHHHhccCC
Confidence 357999999999999999999987653
No 303
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=80.69 E-value=0.68 Score=48.71 Aligned_cols=27 Identities=30% Similarity=0.359 Sum_probs=23.2
Q ss_pred CccEEEecCCCCcHHHHHHHHHHHhCC
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARKSVW 413 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~lg~ 413 (415)
...++++||+|||||.|+..|++..+.
T Consensus 227 Gqr~~I~g~~g~GKT~L~~~ia~~~~~ 253 (588)
T 3mfy_A 227 GGTAAIPGPAGSGKTVTQHQLAKWSDA 253 (588)
T ss_dssp TCEEEECSCCSHHHHHHHHHHHHHSSC
T ss_pred CCeEEeecCCCCCHHHHHHHHHhccCC
Confidence 457999999999999999999987543
No 304
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=80.60 E-value=0.81 Score=43.58 Aligned_cols=22 Identities=27% Similarity=0.513 Sum_probs=19.7
Q ss_pred ccEEEecCCCCcHHHHHHHHHH
Q 014938 388 RNMLFYGPPGTGKTMVAREIAR 409 (415)
Q Consensus 388 r~vLl~GPPGTGKT~lAkaLA~ 409 (415)
-.++|.|.||+|||+|..+|..
T Consensus 121 ~~v~~vG~~nvGKSsliN~l~~ 142 (282)
T 1puj_A 121 IRALIIGIPNVGKSTLINRLAK 142 (282)
T ss_dssp EEEEEEESTTSSHHHHHHHHHT
T ss_pred ceEEEEecCCCchHHHHHHHhc
Confidence 4689999999999999999874
No 305
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=80.26 E-value=1.2 Score=44.36 Aligned_cols=16 Identities=44% Similarity=0.739 Sum_probs=13.6
Q ss_pred cEEEecCCCCcHHHHH
Q 014938 389 NMLFYGPPGTGKTMVA 404 (415)
Q Consensus 389 ~vLl~GPPGTGKT~lA 404 (415)
.|+-||.+|+|||+.-
T Consensus 103 tifAYGqTGSGKTyTm 118 (373)
T 2wbe_C 103 TVFAYGQTGTGKTHTM 118 (373)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEeecCCCCCcceec
Confidence 5777999999999864
No 306
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=80.25 E-value=0.96 Score=44.75 Aligned_cols=17 Identities=29% Similarity=0.577 Sum_probs=14.0
Q ss_pred ccEEEecCCCCcHHHHH
Q 014938 388 RNMLFYGPPGTGKTMVA 404 (415)
Q Consensus 388 r~vLl~GPPGTGKT~lA 404 (415)
..|+-||.+|+|||+.-
T Consensus 79 ~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 79 GTIFAYGQTASGKTYTM 95 (349)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred cceeeecCCCCCCCeEE
Confidence 35777999999999864
No 307
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=80.25 E-value=0.55 Score=50.15 Aligned_cols=23 Identities=22% Similarity=0.284 Sum_probs=18.8
Q ss_pred CCccEEEecCCCCcHHHHHHHHH
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIA 408 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA 408 (415)
+..-+.|.||+|+|||+|.++|.
T Consensus 347 ~Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 347 LGTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp TTSEEEEECSTTSSHHHHHTTTH
T ss_pred CCCEEEEEeeCCCCHHHHHHHHH
Confidence 34567899999999999997653
No 308
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=80.23 E-value=0.97 Score=48.28 Aligned_cols=21 Identities=33% Similarity=0.525 Sum_probs=17.8
Q ss_pred CccEEEecCCCCcHHHHHHHH
Q 014938 387 FRNMLFYGPPGTGKTMVAREI 407 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaL 407 (415)
.+++|+.||+|+|||+.+-..
T Consensus 46 ~~~~lv~apTGsGKT~~~~l~ 66 (715)
T 2va8_A 46 GNRLLLTSPTGSGKTLIAEMG 66 (715)
T ss_dssp TCCEEEECCTTSCHHHHHHHH
T ss_pred CCcEEEEcCCCCcHHHHHHHH
Confidence 469999999999999987433
No 309
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=79.88 E-value=1.1 Score=44.66 Aligned_cols=17 Identities=41% Similarity=0.716 Sum_probs=14.0
Q ss_pred ccEEEecCCCCcHHHHH
Q 014938 388 RNMLFYGPPGTGKTMVA 404 (415)
Q Consensus 388 r~vLl~GPPGTGKT~lA 404 (415)
..|+-||.+|+|||+.-
T Consensus 103 ~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 103 GTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred eeEEeecCCCCCCCEeE
Confidence 35677999999999864
No 310
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=79.84 E-value=1.2 Score=44.17 Aligned_cols=16 Identities=44% Similarity=0.818 Sum_probs=13.4
Q ss_pred cEEEecCCCCcHHHHH
Q 014938 389 NMLFYGPPGTGKTMVA 404 (415)
Q Consensus 389 ~vLl~GPPGTGKT~lA 404 (415)
.|+-||.+|+|||+.-
T Consensus 91 tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 91 TIFAYGQTGTGKTFTM 106 (359)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEeCCCCCCCceEE
Confidence 4667999999999864
No 311
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=79.77 E-value=1 Score=46.26 Aligned_cols=20 Identities=40% Similarity=0.345 Sum_probs=16.9
Q ss_pred CccEEEecCCCCcHHHHHHH
Q 014938 387 FRNMLFYGPPGTGKTMVARE 406 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAka 406 (415)
.+++|+.+|+|+|||+.+-.
T Consensus 158 ~~~~ll~apTGsGKT~~~~~ 177 (508)
T 3fho_A 158 PRNMIGQSQSGTGKTAAFAL 177 (508)
T ss_dssp CCCEEEECCSSTTSHHHHHH
T ss_pred CCCEEEECCCCccHHHHHHH
Confidence 47999999999999987543
No 312
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=79.49 E-value=1.2 Score=44.07 Aligned_cols=17 Identities=41% Similarity=0.630 Sum_probs=14.1
Q ss_pred ccEEEecCCCCcHHHHH
Q 014938 388 RNMLFYGPPGTGKTMVA 404 (415)
Q Consensus 388 r~vLl~GPPGTGKT~lA 404 (415)
-.|+-||.+|+|||+.-
T Consensus 96 ~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 96 CTALAYGQTGTGKSYSM 112 (344)
T ss_dssp EEEEEESSTTSSHHHHH
T ss_pred eEEEEecCCCCCCCeEE
Confidence 35777999999999964
No 313
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=79.49 E-value=1.1 Score=44.39 Aligned_cols=17 Identities=35% Similarity=0.679 Sum_probs=13.9
Q ss_pred ccEEEecCCCCcHHHHH
Q 014938 388 RNMLFYGPPGTGKTMVA 404 (415)
Q Consensus 388 r~vLl~GPPGTGKT~lA 404 (415)
..|+-||.+|+|||+.-
T Consensus 91 ~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 91 STIFAYGQTGAGKTWTM 107 (350)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eeEEeecCCCCCCCEEe
Confidence 35777999999999864
No 314
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=79.27 E-value=1 Score=46.42 Aligned_cols=25 Identities=24% Similarity=0.409 Sum_probs=21.6
Q ss_pred CccEEEecCCCCcHHHHHHHHHHHh
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
...++++||+|||||+|+.-|++..
T Consensus 153 GQr~~Ifgg~G~GKT~L~~~i~~~~ 177 (482)
T 2ck3_D 153 GGKIGLFGGAGVGKTVLIMELINNV 177 (482)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CCeeeeecCCCCChHHHHHHHHHhh
Confidence 4579999999999999998888753
No 315
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=79.05 E-value=1.2 Score=44.20 Aligned_cols=16 Identities=44% Similarity=0.752 Sum_probs=13.6
Q ss_pred cEEEecCCCCcHHHHH
Q 014938 389 NMLFYGPPGTGKTMVA 404 (415)
Q Consensus 389 ~vLl~GPPGTGKT~lA 404 (415)
.|+-||.+|+|||+.-
T Consensus 108 tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 108 TVLAYGATGAGKTHTM 123 (355)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEeCCCCCCceeee
Confidence 5777999999999864
No 316
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=78.90 E-value=1.3 Score=44.52 Aligned_cols=16 Identities=50% Similarity=0.912 Sum_probs=13.4
Q ss_pred cEEEecCCCCcHHHHH
Q 014938 389 NMLFYGPPGTGKTMVA 404 (415)
Q Consensus 389 ~vLl~GPPGTGKT~lA 404 (415)
.|+-||.+|+|||+.-
T Consensus 101 tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 101 SVLAYGPTGAGKTHTM 116 (388)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred eEeeecCCCCCCCeEe
Confidence 5667999999999864
No 317
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=78.73 E-value=1.1 Score=50.12 Aligned_cols=23 Identities=22% Similarity=0.219 Sum_probs=19.8
Q ss_pred CccEEEecCCCCcHHHHHHHHHH
Q 014938 387 FRNMLFYGPPGTGKTMVAREIAR 409 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~ 409 (415)
..-++|.||.|+|||++.+.||.
T Consensus 662 g~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 662 QMFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp BCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35688999999999999999863
No 318
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=78.65 E-value=2.5 Score=46.16 Aligned_cols=22 Identities=41% Similarity=0.454 Sum_probs=18.4
Q ss_pred CccEEEecCCCCcHHHHHHHHH
Q 014938 387 FRNMLFYGPPGTGKTMVAREIA 408 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA 408 (415)
+.++|+.||+|+|||..+-..+
T Consensus 389 ~~~~Ll~a~TGSGKTlvall~i 410 (780)
T 1gm5_A 389 PMNRLLQGDVGSGKTVVAQLAI 410 (780)
T ss_dssp CCCCEEECCSSSSHHHHHHHHH
T ss_pred CCcEEEEcCCCCCHHHHHHHHH
Confidence 4699999999999999776544
No 319
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=78.52 E-value=2.4 Score=44.05 Aligned_cols=19 Identities=26% Similarity=0.303 Sum_probs=16.1
Q ss_pred CccEEEecCCCCcHHHHHH
Q 014938 387 FRNMLFYGPPGTGKTMVAR 405 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAk 405 (415)
.+++|+.+|+|+|||+.+-
T Consensus 60 ~~dvlv~apTGsGKTl~~~ 78 (579)
T 3sqw_A 60 DHDVIARAKTGTGKTFAFL 78 (579)
T ss_dssp SEEEEEECCTTSCHHHHHH
T ss_pred CCeEEEEcCCCcHHHHHHH
Confidence 4689999999999998543
No 320
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=78.51 E-value=0.86 Score=50.77 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=20.2
Q ss_pred CccEEEecCCCCcHHHHHHHHHH
Q 014938 387 FRNMLFYGPPGTGKTMVAREIAR 409 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~ 409 (415)
..-++|.||.|+|||++.+.||.
T Consensus 673 g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 673 ERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp CCEEEEESCCCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCchHHHHHHHHH
Confidence 45688999999999999999874
No 321
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=78.33 E-value=0.8 Score=52.79 Aligned_cols=27 Identities=22% Similarity=0.335 Sum_probs=22.8
Q ss_pred CCCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 385 APFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 385 ~p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
.|...+-++||+|+|||+|++.|++..
T Consensus 1057 ~~Ge~v~ivG~sGsGKSTl~~~l~g~~ 1083 (1284)
T 3g5u_A 1057 KKGQTLALVGSSGCGKSTVVQLLERFY 1083 (1284)
T ss_dssp CSSSEEEEECSSSTTHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 455678899999999999999998654
No 322
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=78.25 E-value=1.5 Score=44.12 Aligned_cols=16 Identities=38% Similarity=0.781 Sum_probs=13.6
Q ss_pred cEEEecCCCCcHHHHH
Q 014938 389 NMLFYGPPGTGKTMVA 404 (415)
Q Consensus 389 ~vLl~GPPGTGKT~lA 404 (415)
.|+-||.+|+|||+.-
T Consensus 143 tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 143 AIFAYGQTGSGKTFTM 158 (403)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred EEEEECCCCCCCceEe
Confidence 5677999999999864
No 323
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=78.11 E-value=0.67 Score=53.58 Aligned_cols=28 Identities=29% Similarity=0.451 Sum_probs=24.1
Q ss_pred CCCccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 385 APFRNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 385 ~p~r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
.|...|-++||+|+|||++++.|.+...
T Consensus 1103 ~~Ge~vaIVG~SGsGKSTL~~lL~rl~~ 1130 (1321)
T 4f4c_A 1103 EPGQTLALVGPSGCGKSTVVALLERFYD 1130 (1321)
T ss_dssp CTTCEEEEECSTTSSTTSHHHHHTTSSC
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCcc
Confidence 5667899999999999999999986554
No 324
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=77.88 E-value=0.93 Score=46.66 Aligned_cols=27 Identities=19% Similarity=0.282 Sum_probs=23.0
Q ss_pred CccEEEecCCCCcHHHHHHHHHHHhCC
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARKSVW 413 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~lg~ 413 (415)
...++++|++|||||.|...||+....
T Consensus 152 GQr~~Ifgg~G~GKt~Ll~~Ia~~~~~ 178 (469)
T 2c61_A 152 GQKLPIFSASGLPHNEIALQIARQASV 178 (469)
T ss_dssp TCBCCEEECTTSCHHHHHHHHHHHCBC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 346788899999999999999988764
No 325
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=77.60 E-value=1.8 Score=46.53 Aligned_cols=24 Identities=17% Similarity=0.257 Sum_probs=21.2
Q ss_pred CccEEEecCCCCcHHHHHHHHHHH
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARK 410 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~ 410 (415)
.-+|++.|+||+|||+|..+|.+.
T Consensus 69 ~~~V~VvG~~naGKSSLlNaLlg~ 92 (695)
T 2j69_A 69 VFRLLVLGDMKRGKSTFLNALIGE 92 (695)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 348999999999999999999854
No 326
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=77.57 E-value=1.2 Score=45.31 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=20.3
Q ss_pred ccEEEecCCCCcHHHHHHHHHHH
Q 014938 388 RNMLFYGPPGTGKTMVAREIARK 410 (415)
Q Consensus 388 r~vLl~GPPGTGKT~lAkaLA~~ 410 (415)
-.|+|.|.||+|||+|...|...
T Consensus 323 ~ki~lvG~~nvGKSsLl~~l~~~ 345 (497)
T 3lvq_E 323 MRILMLGLDAAGKTTILYKLKLG 345 (497)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEcCCCCCHHHHHHHHhcC
Confidence 47999999999999999998753
No 327
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=77.53 E-value=1.1 Score=45.34 Aligned_cols=16 Identities=38% Similarity=0.667 Sum_probs=13.5
Q ss_pred cEEEecCCCCcHHHHH
Q 014938 389 NMLFYGPPGTGKTMVA 404 (415)
Q Consensus 389 ~vLl~GPPGTGKT~lA 404 (415)
.|+-||.+|+|||+.-
T Consensus 157 tifAYGQTGSGKTyTM 172 (410)
T 1v8k_A 157 TCFAYGQTGSGKTHTM 172 (410)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred eEEeecCCCCCCCeEe
Confidence 5667999999999864
No 328
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=77.27 E-value=0.86 Score=46.97 Aligned_cols=23 Identities=22% Similarity=0.482 Sum_probs=20.8
Q ss_pred ccEEEecCCCCcHHHHHHHHHHH
Q 014938 388 RNMLFYGPPGTGKTMVAREIARK 410 (415)
Q Consensus 388 r~vLl~GPPGTGKT~lAkaLA~~ 410 (415)
-.|+|.|+||+|||+|..+|...
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~ 266 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNE 266 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHH
T ss_pred CEEEEECcCCCcHHHHHHHHHCC
Confidence 37999999999999999999875
No 329
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=77.22 E-value=1.2 Score=44.80 Aligned_cols=24 Identities=17% Similarity=0.378 Sum_probs=21.0
Q ss_pred CccEEEecCCCCcHHHHHHHHHHH
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARK 410 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~ 410 (415)
..+|+|.|.||+|||+|..+|...
T Consensus 175 ~~ki~lvG~~nvGKSSLin~l~~~ 198 (436)
T 2hjg_A 175 VIQFCLIGRPNVGKSSLVNAMLGE 198 (436)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCC
Confidence 458999999999999999998753
No 330
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=77.10 E-value=1 Score=48.16 Aligned_cols=19 Identities=37% Similarity=0.525 Sum_probs=16.6
Q ss_pred CccEEEecCCCCcHHHHHH
Q 014938 387 FRNMLFYGPPGTGKTMVAR 405 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAk 405 (415)
.+++|+.||+|+|||+.+-
T Consensus 39 ~~~~lv~apTGsGKT~~~~ 57 (720)
T 2zj8_A 39 GKNALISIPTASGKTLIAE 57 (720)
T ss_dssp TCEEEEECCGGGCHHHHHH
T ss_pred CCcEEEEcCCccHHHHHHH
Confidence 3699999999999998773
No 331
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=76.94 E-value=0.99 Score=45.13 Aligned_cols=24 Identities=25% Similarity=0.415 Sum_probs=18.7
Q ss_pred cEEEecCCCCcHHHHHHHHHHHhC
Q 014938 389 NMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 389 ~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
-|.|-|+-|+|||++++.|+..++
T Consensus 51 fIt~EG~dGsGKTT~~~~Lae~L~ 74 (376)
T 1of1_A 51 RVYIDGPHGMGKTTTTQLLVALGS 74 (376)
T ss_dssp EEEECSSTTSSHHHHHHHHHC---
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 355779999999999999998764
No 332
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=76.50 E-value=1.4 Score=49.71 Aligned_cols=22 Identities=27% Similarity=0.372 Sum_probs=19.4
Q ss_pred CccEEEecCCCCcHHHHHHHHH
Q 014938 387 FRNMLFYGPPGTGKTMVAREIA 408 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA 408 (415)
..-++|.||.|+|||++.+.|+
T Consensus 789 g~i~~ItGpNgsGKSTlLr~iG 810 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQAG 810 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHH
Confidence 3568899999999999999985
No 333
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=76.32 E-value=1.5 Score=46.16 Aligned_cols=24 Identities=21% Similarity=0.380 Sum_probs=20.9
Q ss_pred ccEEEecCCCCcHHHHHHHHHHHh
Q 014938 388 RNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 388 r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
.|+|+.|.||+|||.+.+.|...+
T Consensus 215 pHlLIaG~TGSGKS~~L~tlI~sL 238 (574)
T 2iut_A 215 PHLLVAGTTGSGKSVGVNAMLLSI 238 (574)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeeEEECCCCCCHHHHHHHHHHHH
Confidence 599999999999999999876543
No 334
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=76.00 E-value=1.2 Score=47.55 Aligned_cols=18 Identities=28% Similarity=0.462 Sum_probs=15.7
Q ss_pred CccEEEecCCCCcHHHHH
Q 014938 387 FRNMLFYGPPGTGKTMVA 404 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lA 404 (415)
..-+.|.||+|+|||+|.
T Consensus 44 Ge~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 44 GKLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp TSEEEEECSTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHh
Confidence 456789999999999996
No 335
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=75.93 E-value=1.4 Score=45.53 Aligned_cols=25 Identities=24% Similarity=0.399 Sum_probs=21.6
Q ss_pred CccEEEecCCCCcHHHHHHHHHHHh
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
...++++|++|||||+|+.-|++..
T Consensus 165 Gqr~gIfgg~GvGKT~L~~~l~~~~ 189 (498)
T 1fx0_B 165 GGKIGLFGGAGVGKTVLIMELINNI 189 (498)
T ss_dssp TCCEEEEECSSSSHHHHHHHHHHHT
T ss_pred CCeEEeecCCCCCchHHHHHHHHHH
Confidence 4579999999999999998888753
No 336
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=75.76 E-value=1.4 Score=44.12 Aligned_cols=16 Identities=38% Similarity=0.667 Sum_probs=13.5
Q ss_pred cEEEecCCCCcHHHHH
Q 014938 389 NMLFYGPPGTGKTMVA 404 (415)
Q Consensus 389 ~vLl~GPPGTGKT~lA 404 (415)
.|+-||.+|+|||+.-
T Consensus 137 tifAYGQTGSGKTyTM 152 (387)
T 2heh_A 137 TCFAYGQTGSGKTHTM 152 (387)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred EEEEecCCCCCCCeEe
Confidence 5667999999999864
No 337
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=75.75 E-value=1.7 Score=42.95 Aligned_cols=16 Identities=38% Similarity=0.750 Sum_probs=13.4
Q ss_pred cEEEecCCCCcHHHHH
Q 014938 389 NMLFYGPPGTGKTMVA 404 (415)
Q Consensus 389 ~vLl~GPPGTGKT~lA 404 (415)
.|+-||.+|+|||+.-
T Consensus 87 tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 87 CIFAYGQTGSGKTFTM 102 (347)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCCcEec
Confidence 4667999999999854
No 338
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=75.55 E-value=1.8 Score=42.70 Aligned_cols=16 Identities=38% Similarity=0.713 Sum_probs=13.4
Q ss_pred cEEEecCCCCcHHHHH
Q 014938 389 NMLFYGPPGTGKTMVA 404 (415)
Q Consensus 389 ~vLl~GPPGTGKT~lA 404 (415)
.|+-||.+|+|||+.-
T Consensus 88 tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 88 CIFAYGQTGSGKTYTM 103 (349)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred eEEEeCCCCCCCceEe
Confidence 4667999999999865
No 339
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=75.31 E-value=5.6 Score=40.05 Aligned_cols=45 Identities=13% Similarity=0.079 Sum_probs=30.2
Q ss_pred ccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 360 IILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 360 vv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
..+.+...+.+.++..... ...++||.-|+|+|||..+-++...+
T Consensus 36 ~~L~~~Q~~~v~~l~~~~~-------~~~~~ilad~~GlGKT~~ai~~i~~~ 80 (500)
T 1z63_A 36 ANLRPYQIKGFSWMRFMNK-------LGFGICLADDMGLGKTLQTIAVFSDA 80 (500)
T ss_dssp SCCCHHHHHHHHHHHHHHH-------TTCCEEECCCTTSCHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHhh-------CCCCEEEEeCCCCcHHHHHHHHHHHH
Confidence 3445665666665543322 13589999999999999988776553
No 340
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=75.23 E-value=1.2 Score=48.00 Aligned_cols=19 Identities=32% Similarity=0.448 Sum_probs=16.0
Q ss_pred CccEEEecCCCCcHHHHHH
Q 014938 387 FRNMLFYGPPGTGKTMVAR 405 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAk 405 (415)
.+++|+.||+|+|||+.+-
T Consensus 155 rk~vlv~apTGSGKT~~al 173 (677)
T 3rc3_A 155 RKIIFHSGPTNSGKTYHAI 173 (677)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHH
Confidence 4689999999999999543
No 341
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=74.87 E-value=0.73 Score=49.24 Aligned_cols=19 Identities=37% Similarity=0.578 Sum_probs=16.8
Q ss_pred CccEEEecCCCCcHHHHHH
Q 014938 387 FRNMLFYGPPGTGKTMVAR 405 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAk 405 (415)
.+++|+.||+|+|||+.+-
T Consensus 40 ~~~~lv~apTGsGKT~~~~ 58 (702)
T 2p6r_A 40 GKNLLLAMPTAAGKTLLAE 58 (702)
T ss_dssp CSCEEEECSSHHHHHHHHH
T ss_pred CCcEEEEcCCccHHHHHHH
Confidence 3699999999999999874
No 342
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=74.64 E-value=1.9 Score=42.67 Aligned_cols=23 Identities=17% Similarity=0.310 Sum_probs=21.2
Q ss_pred ccEEEecCCCCcHHHHHHHHHHH
Q 014938 388 RNMLFYGPPGTGKTMVAREIARK 410 (415)
Q Consensus 388 r~vLl~GPPGTGKT~lAkaLA~~ 410 (415)
++++|.|+||+|||+|..+|...
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEcCCCCchHHHHHHHHhh
Confidence 58999999999999999999876
No 343
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=74.61 E-value=4 Score=46.47 Aligned_cols=22 Identities=41% Similarity=0.380 Sum_probs=18.2
Q ss_pred CccEEEecCCCCcHHHHHHHHH
Q 014938 387 FRNMLFYGPPGTGKTMVAREIA 408 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA 408 (415)
+.++|++||+|+|||..+-..+
T Consensus 624 p~d~ll~~~TGsGKT~val~aa 645 (1151)
T 2eyq_A 624 AMDRLVCGDVGFGKTEVAMRAA 645 (1151)
T ss_dssp CCEEEEECCCCTTTHHHHHHHH
T ss_pred cCcEEEECCCCCCHHHHHHHHH
Confidence 3589999999999998876444
No 344
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=74.51 E-value=0.73 Score=47.59 Aligned_cols=25 Identities=20% Similarity=0.263 Sum_probs=21.7
Q ss_pred cEEEecCCCCcHHHHHHHHHHHhCC
Q 014938 389 NMLFYGPPGTGKTMVAREIARKSVW 413 (415)
Q Consensus 389 ~vLl~GPPGTGKT~lAkaLA~~lg~ 413 (415)
-.+|+|+.|+|||+|..+|.-.+|-
T Consensus 62 ~n~i~G~NGaGKS~lleAl~~llg~ 86 (517)
T 4ad8_A 62 FCAFTGETGAGKSIIVDALGLLLGG 86 (517)
T ss_dssp EEEEEESHHHHHHHHTHHHHHHTCS
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 4668999999999999999887664
No 345
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=73.91 E-value=1.9 Score=44.25 Aligned_cols=19 Identities=26% Similarity=0.303 Sum_probs=16.2
Q ss_pred CccEEEecCCCCcHHHHHH
Q 014938 387 FRNMLFYGPPGTGKTMVAR 405 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAk 405 (415)
.+++|+.+|+|+|||+.+-
T Consensus 111 ~~~~lv~apTGsGKTl~~~ 129 (563)
T 3i5x_A 111 DHDVIARAKTGTGKTFAFL 129 (563)
T ss_dssp SEEEEEECCTTSCHHHHHH
T ss_pred CCeEEEECCCCCCccHHHH
Confidence 5799999999999998543
No 346
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=73.83 E-value=4.4 Score=42.59 Aligned_cols=21 Identities=24% Similarity=0.449 Sum_probs=17.4
Q ss_pred ccEEEecCCCCcHHHHHHHHH
Q 014938 388 RNMLFYGPPGTGKTMVAREIA 408 (415)
Q Consensus 388 r~vLl~GPPGTGKT~lAkaLA 408 (415)
+++|+.+|+|+|||+.+...+
T Consensus 60 ~d~lv~~pTGsGKTl~~~lpa 80 (591)
T 2v1x_A 60 KEVFLVMPTGGGKSLCYQLPA 80 (591)
T ss_dssp CCEEEECCTTSCTTHHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHH
Confidence 589999999999998665444
No 347
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=73.57 E-value=1.5 Score=42.99 Aligned_cols=16 Identities=38% Similarity=0.694 Sum_probs=13.5
Q ss_pred cEEEecCCCCcHHHHH
Q 014938 389 NMLFYGPPGTGKTMVA 404 (415)
Q Consensus 389 ~vLl~GPPGTGKT~lA 404 (415)
.|+-||.+|+|||+.-
T Consensus 83 tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 83 CIFAYGQTGAGKTYTM 98 (330)
T ss_dssp EEEEESSTTSSHHHHH
T ss_pred EEEeECCCCCCCcEEE
Confidence 5677999999999854
No 348
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=73.53 E-value=1.5 Score=45.05 Aligned_cols=27 Identities=19% Similarity=0.258 Sum_probs=23.0
Q ss_pred CccEEEecCCCCcHHHHHHHHHHHhCC
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARKSVW 413 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~lg~ 413 (415)
...++++|++|+|||.|+..|++....
T Consensus 151 GQr~~Ifgg~G~GKt~L~~~Ia~~~~~ 177 (465)
T 3vr4_D 151 GQKLPVFSGSGLPHKELAAQIARQATV 177 (465)
T ss_dssp TCBCCEEECTTSCHHHHHHHHHHHCBC
T ss_pred CCEEEEeCCCCcChHHHHHHHHHHHHh
Confidence 346889999999999999999988654
No 349
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=73.44 E-value=2.3 Score=42.45 Aligned_cols=16 Identities=38% Similarity=0.750 Sum_probs=13.4
Q ss_pred cEEEecCCCCcHHHHH
Q 014938 389 NMLFYGPPGTGKTMVA 404 (415)
Q Consensus 389 ~vLl~GPPGTGKT~lA 404 (415)
.|+-||.+|+|||+.-
T Consensus 118 tifAYGqTGSGKTyTM 133 (376)
T 2rep_A 118 CIFAYGQTGSGKTFTM 133 (376)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEeCCCCCCCceEe
Confidence 5667999999999864
No 350
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=73.30 E-value=1.6 Score=45.26 Aligned_cols=26 Identities=31% Similarity=0.309 Sum_probs=21.6
Q ss_pred CccEEEecCCCCcHHHHH-HHHHHHhC
Q 014938 387 FRNMLFYGPPGTGKTMVA-REIARKSV 412 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lA-kaLA~~lg 412 (415)
...++++|++|||||+++ ..|+++.+
T Consensus 162 GQR~~Ifg~~g~GKT~Lal~~I~~~~~ 188 (502)
T 2qe7_A 162 GQRELIIGDRQTGKTTIAIDTIINQKG 188 (502)
T ss_dssp TCBCEEEECSSSCHHHHHHHHHHGGGS
T ss_pred CCEEEEECCCCCCchHHHHHHHHHhhc
Confidence 457999999999999995 58887764
No 351
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=73.12 E-value=1.1e+02 Score=33.38 Aligned_cols=8 Identities=25% Similarity=0.389 Sum_probs=3.8
Q ss_pred CCCCchhh
Q 014938 69 SGFDPEAL 76 (415)
Q Consensus 69 ~~fdp~~l 76 (415)
-.|+..+|
T Consensus 626 ~~F~~N~l 633 (861)
T 2zuo_A 626 AVFPQNGL 633 (861)
T ss_dssp EECTTTCE
T ss_pred eEEccCCe
Confidence 34555544
No 352
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=73.11 E-value=1.8 Score=45.69 Aligned_cols=27 Identities=19% Similarity=0.302 Sum_probs=22.5
Q ss_pred CCCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 385 APFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 385 ~p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
.+..+|++.|.||+|||+|...|....
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~ 201 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIMFEL 201 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHHHHH
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999886543
No 353
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=72.53 E-value=1.3 Score=45.42 Aligned_cols=27 Identities=19% Similarity=0.278 Sum_probs=23.1
Q ss_pred CccEEEecCCCCcHHHHHHHHHHHhCC
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARKSVW 413 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~lg~ 413 (415)
...++++|++|+|||.|+..|++....
T Consensus 147 GQr~~Ifgg~G~GKt~L~~~Ia~~~~a 173 (464)
T 3gqb_B 147 GQKLPIFSGSGLPANEIAAQIARQATV 173 (464)
T ss_dssp TCBCCEEEETTSCHHHHHHHHHHHCBC
T ss_pred CCEEEEecCCCCCchHHHHHHHHHHHh
Confidence 346889999999999999999988654
No 354
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=72.42 E-value=1.5 Score=45.57 Aligned_cols=26 Identities=31% Similarity=0.308 Sum_probs=21.5
Q ss_pred CccEEEecCCCCcHHHHH-HHHHHHhC
Q 014938 387 FRNMLFYGPPGTGKTMVA-REIARKSV 412 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lA-kaLA~~lg 412 (415)
...++++|++|||||+|+ ..|++..+
T Consensus 175 GQR~~I~g~~g~GKT~Lal~~I~~~~~ 201 (515)
T 2r9v_A 175 GQRELIIGDRQTGKTAIAIDTIINQKG 201 (515)
T ss_dssp TCBEEEEEETTSSHHHHHHHHHHTTTT
T ss_pred CCEEEEEcCCCCCccHHHHHHHHHhhc
Confidence 457999999999999995 58887654
No 355
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=72.32 E-value=2.2 Score=39.95 Aligned_cols=24 Identities=17% Similarity=0.304 Sum_probs=19.4
Q ss_pred ccEEEec---CCCCcHHHHHHHHHHHh
Q 014938 388 RNMLFYG---PPGTGKTMVAREIARKS 411 (415)
Q Consensus 388 r~vLl~G---PPGTGKT~lAkaLA~~l 411 (415)
+.|.+++ ..|+|||+++..||..+
T Consensus 35 ~~i~v~~~s~KGGvGKTT~a~nLA~~l 61 (298)
T 2oze_A 35 EAIVILNNYFKGGVGKSKLSTMFAYLT 61 (298)
T ss_dssp SCEEEEECCSSSSSSHHHHHHHHHHHH
T ss_pred cEEEEEeccCCCCchHHHHHHHHHHHH
Confidence 4566665 89999999999998765
No 356
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=72.26 E-value=1.6 Score=44.06 Aligned_cols=17 Identities=35% Similarity=0.624 Sum_probs=14.0
Q ss_pred ccEEEecCCCCcHHHHH
Q 014938 388 RNMLFYGPPGTGKTMVA 404 (415)
Q Consensus 388 r~vLl~GPPGTGKT~lA 404 (415)
..|+-||.+|+|||+.-
T Consensus 140 ~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 140 ICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp EEEEEESSTTSSHHHHH
T ss_pred eEEEEecCCCCCCeeEe
Confidence 35777999999999864
No 357
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=72.08 E-value=5.7 Score=37.70 Aligned_cols=44 Identities=23% Similarity=0.277 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHhhhhhcCCCccEEEecC-CCCcHHHHHHHHHHHh
Q 014938 367 QRRIQHLAKATANTKIHQAPFRNMLFYGP-PGTGKTMVAREIARKS 411 (415)
Q Consensus 367 ~~~l~~l~~~~~~~k~~~~p~r~vLl~GP-PGTGKT~lAkaLA~~l 411 (415)
.+.++.+......... ..+.+-|+++|+ ||+|||++|..||..+
T Consensus 73 ~Ea~r~lrt~l~~~~~-~~~~kvI~vts~kgG~GKTtva~nLA~~l 117 (286)
T 3la6_A 73 IEAIRSLRTSLHFAMM-QAQNNVLMMTGVSPSIGMTFVCANLAAVI 117 (286)
T ss_dssp HHHHHHHHHHHHHHST-TTTCCEEEEEESSSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhcc-CCCCeEEEEECCCCCCcHHHHHHHHHHHH
Confidence 3455555444332211 233456777766 8999999999998765
No 358
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=72.06 E-value=2.2 Score=42.36 Aligned_cols=15 Identities=40% Similarity=0.724 Sum_probs=13.2
Q ss_pred EEEecCCCCcHHHHH
Q 014938 390 MLFYGPPGTGKTMVA 404 (415)
Q Consensus 390 vLl~GPPGTGKT~lA 404 (415)
|+-||.+|+|||+.-
T Consensus 88 ifAYGqTGSGKTyTM 102 (360)
T 1ry6_A 88 CFAYGQTGSGKTYTM 102 (360)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEeeCCCCCCCCEEE
Confidence 778999999999864
No 359
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=71.90 E-value=1.6 Score=42.81 Aligned_cols=22 Identities=18% Similarity=0.360 Sum_probs=19.1
Q ss_pred ccEEEecCCCCcHHHHHHHHHH
Q 014938 388 RNMLFYGPPGTGKTMVAREIAR 409 (415)
Q Consensus 388 r~vLl~GPPGTGKT~lAkaLA~ 409 (415)
..|.|.|.||+|||+|..+|..
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~ 180 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSS 180 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEE
T ss_pred CeeeeeCCCCCCHHHHHHHHHc
Confidence 3688999999999999988753
No 360
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=71.52 E-value=1.9 Score=44.10 Aligned_cols=28 Identities=14% Similarity=0.241 Sum_probs=23.6
Q ss_pred CCCccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 385 APFRNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 385 ~p~r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
.+.-+|++.|.||+|||+|...|....+
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~ 58 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLN 58 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTT
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3456999999999999999999976643
No 361
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=71.31 E-value=1.9 Score=45.67 Aligned_cols=26 Identities=15% Similarity=0.314 Sum_probs=21.9
Q ss_pred CCCccEEEecCCCCcHHHHHHHHHHH
Q 014938 385 APFRNMLFYGPPGTGKTMVAREIARK 410 (415)
Q Consensus 385 ~p~r~vLl~GPPGTGKT~lAkaLA~~ 410 (415)
.+.-+|+++|+||+|||+|..+|...
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~ 190 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYD 190 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHh
Confidence 34568999999999999999998744
No 362
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=71.29 E-value=1.7 Score=43.37 Aligned_cols=16 Identities=38% Similarity=0.748 Sum_probs=13.4
Q ss_pred cEEEecCCCCcHHHHH
Q 014938 389 NMLFYGPPGTGKTMVA 404 (415)
Q Consensus 389 ~vLl~GPPGTGKT~lA 404 (415)
.|+-||.+|+|||+.-
T Consensus 82 tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 82 CIFAYGQTGSGKTFTI 97 (369)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCCCCeEee
Confidence 4667999999999864
No 363
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=70.65 E-value=2.4 Score=41.83 Aligned_cols=23 Identities=13% Similarity=0.375 Sum_probs=21.3
Q ss_pred ccEEEecCCCCcHHHHHHHHHHH
Q 014938 388 RNMLFYGPPGTGKTMVAREIARK 410 (415)
Q Consensus 388 r~vLl~GPPGTGKT~lAkaLA~~ 410 (415)
..++|.|+||+|||+|..+|.+.
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~ 183 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKE 183 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhh
Confidence 58999999999999999999876
No 364
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=70.14 E-value=4.6 Score=39.61 Aligned_cols=26 Identities=23% Similarity=0.221 Sum_probs=20.4
Q ss_pred CCccEEEec-CCCCcHHHHHHHHHHHh
Q 014938 386 PFRNMLFYG-PPGTGKTMVAREIARKS 411 (415)
Q Consensus 386 p~r~vLl~G-PPGTGKT~lAkaLA~~l 411 (415)
+.+-|.++| -.|+|||++|..||..+
T Consensus 142 ~~kvIav~s~KGGvGKTT~a~nLA~~L 168 (373)
T 3fkq_A 142 KSSVVIFTSPCGGVGTSTVAAACAIAH 168 (373)
T ss_dssp SCEEEEEECSSTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCChHHHHHHHHHHHH
Confidence 345677775 79999999999888764
No 365
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=70.08 E-value=2.5 Score=44.13 Aligned_cols=24 Identities=33% Similarity=0.476 Sum_probs=19.7
Q ss_pred ccEEEecCCCCcHHHHHHHHHHHh
Q 014938 388 RNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 388 r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
.-+++.|.+|+|||++|..||..+
T Consensus 328 ~~~~~~~~~g~Gktt~a~~lA~~l 351 (589)
T 1ihu_A 328 GLIMLMGKGGVGKTTMAAAIAVRL 351 (589)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEecCCCCChhhHHHHHHHHH
Confidence 345667999999999999998765
No 366
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=69.86 E-value=2 Score=44.85 Aligned_cols=24 Identities=25% Similarity=0.221 Sum_probs=20.9
Q ss_pred CccEEEecCCCCcHHHHHHHHHHH
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARK 410 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~ 410 (415)
...|++.|.||+|||+|..+|...
T Consensus 65 ~~~V~vvG~~n~GKSTLIN~Llg~ 88 (550)
T 2qpt_A 65 KPMVLVAGQYSTGKTSFIQYLLEQ 88 (550)
T ss_dssp CCEEEEEEBTTSCHHHHHHHHHTS
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 357999999999999999998754
No 367
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=69.84 E-value=1.5 Score=45.42 Aligned_cols=26 Identities=35% Similarity=0.308 Sum_probs=21.2
Q ss_pred CccEEEecCCCCcHHHHH-HHHHHHhC
Q 014938 387 FRNMLFYGPPGTGKTMVA-REIARKSV 412 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lA-kaLA~~lg 412 (415)
...++++|++|||||.++ ..|++..+
T Consensus 163 GQR~~Ifg~~g~GKT~Lal~~I~~~~~ 189 (507)
T 1fx0_A 163 GQRELIIGDRQTGKTAVATDTILNQQG 189 (507)
T ss_dssp TCBCBEEESSSSSHHHHHHHHHHTCCT
T ss_pred CCEEEEecCCCCCccHHHHHHHHHhhc
Confidence 457899999999999995 58877654
No 368
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=69.27 E-value=2.1 Score=44.45 Aligned_cols=25 Identities=28% Similarity=0.312 Sum_probs=20.1
Q ss_pred CccEEEecCCCCcHHHH-HHHHHHHh
Q 014938 387 FRNMLFYGPPGTGKTMV-AREIARKS 411 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~l-AkaLA~~l 411 (415)
...++++|++|||||.| ...|++..
T Consensus 162 GQR~~I~g~~g~GKT~Lal~~I~~q~ 187 (510)
T 2ck3_A 162 GQRELIIGDRQTGKTSIAIDTIINQK 187 (510)
T ss_dssp TCBCEEEESTTSSHHHHHHHHHHHTH
T ss_pred CCEEEEecCCCCCchHHHHHHHHHHH
Confidence 45799999999999999 45666654
No 369
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=68.92 E-value=3.4 Score=42.08 Aligned_cols=16 Identities=31% Similarity=0.692 Sum_probs=13.6
Q ss_pred cEEEecCCCCcHHHHH
Q 014938 389 NMLFYGPPGTGKTMVA 404 (415)
Q Consensus 389 ~vLl~GPPGTGKT~lA 404 (415)
.|+-||.+|+|||+.-
T Consensus 139 tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 139 CIFAYGQTGSGKSYTM 154 (443)
T ss_dssp EEEEESSTTSSHHHHH
T ss_pred EEEEeCCCCCCCCEEe
Confidence 5677999999999864
No 370
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=68.68 E-value=3.8 Score=40.48 Aligned_cols=16 Identities=31% Similarity=0.692 Sum_probs=13.7
Q ss_pred cEEEecCCCCcHHHHH
Q 014938 389 NMLFYGPPGTGKTMVA 404 (415)
Q Consensus 389 ~vLl~GPPGTGKT~lA 404 (415)
.|+-||.+|+|||+.-
T Consensus 95 tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 95 CIFAYGQTGSGKSYTM 110 (354)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEeeCCCCCCCceEE
Confidence 5777999999999864
No 371
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=68.45 E-value=2.9 Score=45.34 Aligned_cols=23 Identities=39% Similarity=0.657 Sum_probs=19.0
Q ss_pred ccEEEecCCCCcHHHHHHHHHHH
Q 014938 388 RNMLFYGPPGTGKTMVAREIARK 410 (415)
Q Consensus 388 r~vLl~GPPGTGKT~lAkaLA~~ 410 (415)
+++|+.+|+|+|||..+-..+..
T Consensus 264 ~~~ll~~~TGsGKTl~~~~~i~~ 286 (797)
T 4a2q_A 264 KNALICAPTGSGKTFVSILICEH 286 (797)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHHH
Confidence 58999999999999977665543
No 372
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=67.96 E-value=3.2 Score=41.18 Aligned_cols=16 Identities=31% Similarity=0.673 Sum_probs=13.5
Q ss_pred cEEEecCCCCcHHHHH
Q 014938 389 NMLFYGPPGTGKTMVA 404 (415)
Q Consensus 389 ~vLl~GPPGTGKT~lA 404 (415)
.|+-||.+|+|||+.-
T Consensus 92 tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 92 CIFAYGQTGAGKSYTM 107 (366)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEeCCCCCCCceEe
Confidence 5667999999999864
No 373
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=67.87 E-value=2.8 Score=41.57 Aligned_cols=16 Identities=38% Similarity=0.789 Sum_probs=13.5
Q ss_pred cEEEecCCCCcHHHHH
Q 014938 389 NMLFYGPPGTGKTMVA 404 (415)
Q Consensus 389 ~vLl~GPPGTGKT~lA 404 (415)
.|+-||.+|+|||+.-
T Consensus 107 tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 107 TIMCYGQTGAGKTYTM 122 (359)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEeCCCCCCccEEe
Confidence 5777999999999853
No 374
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=67.55 E-value=1 Score=46.54 Aligned_cols=21 Identities=33% Similarity=0.464 Sum_probs=17.0
Q ss_pred ccEEEecCCCCcHHHHHHHHH
Q 014938 388 RNMLFYGPPGTGKTMVAREIA 408 (415)
Q Consensus 388 r~vLl~GPPGTGKT~lAkaLA 408 (415)
+++|+.+|+|+|||+.+...+
T Consensus 41 ~d~lv~apTGsGKTl~~~lp~ 61 (523)
T 1oyw_A 41 RDCLVVMPTGGGKSLCYQIPA 61 (523)
T ss_dssp CCEEEECSCHHHHHHHHHHHH
T ss_pred CCEEEECCCCcHHHHHHHHHH
Confidence 589999999999998655433
No 375
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=67.47 E-value=2.8 Score=41.52 Aligned_cols=16 Identities=38% Similarity=0.789 Sum_probs=13.5
Q ss_pred cEEEecCCCCcHHHHH
Q 014938 389 NMLFYGPPGTGKTMVA 404 (415)
Q Consensus 389 ~vLl~GPPGTGKT~lA 404 (415)
.|+-||.+|+|||+.-
T Consensus 106 tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 106 TIMCYGQTGAGKTYTM 121 (358)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCCceEe
Confidence 5667999999999864
No 376
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=67.02 E-value=2.7e+02 Score=35.34 Aligned_cols=36 Identities=14% Similarity=0.104 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 014938 92 AREAFDIMRKQEQTRLAELDVEKVHYEAIQSQVDVE 127 (415)
Q Consensus 92 a~~~~~~~~~qe~t~q~e~~~~~~e~~~~~~~~~~~ 127 (415)
+..-.+-|+.+=..+|.+++.+.++.+....+...+
T Consensus 1932 t~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~ 1967 (3245)
T 3vkg_A 1932 TEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQD 1967 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555555666666666555555544443
No 377
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=66.64 E-value=4.7 Score=44.99 Aligned_cols=43 Identities=21% Similarity=0.224 Sum_probs=29.4
Q ss_pred ccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 360 IILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 360 vv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+.+.+.....+.++... ...++||.+|+|+|||..|-+++..+
T Consensus 152 ~~LrpyQ~eav~~~l~~---------~~~~~LLad~tGlGKTi~Ai~~i~~l 194 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRR---------HAPRVLLADEVGLGKTIEAGMILHQQ 194 (968)
T ss_dssp SCCCHHHHHHHHHHHHS---------SSCEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHh---------cCCCEEEECCCCCcHHHHHHHHHHHH
Confidence 44456555555544321 14589999999999999988777553
No 378
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=66.16 E-value=7.2 Score=40.99 Aligned_cols=14 Identities=7% Similarity=0.138 Sum_probs=6.7
Q ss_pred HHHHHHhhhHHHHH
Q 014938 145 QARAQGLRNEDELA 158 (415)
Q Consensus 145 ~~~~~~a~y~D~L~ 158 (415)
+...++.+++++..
T Consensus 339 ~~~~~~~~~~~~~~ 352 (575)
T 2i1j_A 339 EYQDRLRQMQEEME 352 (575)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444455555554
No 379
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=64.52 E-value=3.5 Score=41.66 Aligned_cols=23 Identities=17% Similarity=0.377 Sum_probs=20.5
Q ss_pred CccEEEecCCCCcHHHHHHHHHH
Q 014938 387 FRNMLFYGPPGTGKTMVAREIAR 409 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~ 409 (415)
..+|++.|.||+|||+|..++..
T Consensus 195 ~~ki~ivG~~~vGKSslin~l~~ 217 (456)
T 4dcu_A 195 VIQFCLIGRPNVGKSSLVNAMLG 217 (456)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHT
T ss_pred cceeEEecCCCCCHHHHHHHHhC
Confidence 46899999999999999999874
No 380
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=64.19 E-value=2.8 Score=47.32 Aligned_cols=21 Identities=24% Similarity=0.401 Sum_probs=17.0
Q ss_pred ccEEEecCCCCcHHHHHHHHH
Q 014938 388 RNMLFYGPPGTGKTMVAREIA 408 (415)
Q Consensus 388 r~vLl~GPPGTGKT~lAkaLA 408 (415)
+++|+.+|+|+|||+++-.+.
T Consensus 72 ~dvlv~apTGSGKTl~~lp~l 92 (1054)
T 1gku_B 72 ESFAATAPTGVGKTSFGLAMS 92 (1054)
T ss_dssp CCEECCCCBTSCSHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHH
Confidence 699999999999997554443
No 381
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=63.59 E-value=5.2 Score=39.42 Aligned_cols=25 Identities=16% Similarity=0.093 Sum_probs=19.7
Q ss_pred CccEEEe-cCCCCcHHHHHHHHHHHh
Q 014938 387 FRNMLFY-GPPGTGKTMVAREIARKS 411 (415)
Q Consensus 387 ~r~vLl~-GPPGTGKT~lAkaLA~~l 411 (415)
.+-|.++ |-.|+|||+++..||..+
T Consensus 108 ~~vIav~s~KGGvGKTT~a~nLA~~L 133 (398)
T 3ez2_A 108 AYVIFISNLKGGVSKTVSTVSLAHAM 133 (398)
T ss_dssp CEEEEECCSSSSSSHHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHHH
Confidence 4455565 779999999999998765
No 382
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=62.31 E-value=3.1 Score=43.18 Aligned_cols=25 Identities=32% Similarity=0.344 Sum_probs=20.3
Q ss_pred CccEEEecCCCCcHHHHH-HHHHHHh
Q 014938 387 FRNMLFYGPPGTGKTMVA-REIARKS 411 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lA-kaLA~~l 411 (415)
...++++|++|||||+++ ..|++..
T Consensus 162 GQR~~Ifg~~g~GKT~l~l~~I~n~~ 187 (513)
T 3oaa_A 162 GQRELIIGDRQTGKTALAIDAIINQR 187 (513)
T ss_dssp TCBCEEEESSSSSHHHHHHHHHHTTS
T ss_pred CCEEEeecCCCCCcchHHHHHHHhhc
Confidence 457999999999999996 5777654
No 383
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=61.98 E-value=3.9 Score=46.38 Aligned_cols=21 Identities=29% Similarity=0.341 Sum_probs=17.4
Q ss_pred ccEEEecCCCCcHHHHHHHHH
Q 014938 388 RNMLFYGPPGTGKTMVAREIA 408 (415)
Q Consensus 388 r~vLl~GPPGTGKT~lAkaLA 408 (415)
+++|++||+|+|||+.+-...
T Consensus 200 ~dvLV~ApTGSGKTlva~l~i 220 (1108)
T 3l9o_A 200 ESVLVSAHTSAGKTVVAEYAI 220 (1108)
T ss_dssp CCEEEECCSSSHHHHHHHHHH
T ss_pred CCEEEECCCCCChHHHHHHHH
Confidence 699999999999998765433
No 384
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=61.50 E-value=2.1 Score=45.85 Aligned_cols=18 Identities=28% Similarity=0.239 Sum_probs=16.1
Q ss_pred CccEEEecCCCCcHHHHH
Q 014938 387 FRNMLFYGPPGTGKTMVA 404 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lA 404 (415)
.+++|+.||+|+|||+.+
T Consensus 241 g~dvlv~apTGSGKTl~~ 258 (673)
T 2wv9_A 241 RQLTVLDLHPGAGKTRRI 258 (673)
T ss_dssp TCEEEECCCTTTTTTTTH
T ss_pred CCeEEEEeCCCCCHHHHH
Confidence 579999999999999964
No 385
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=61.23 E-value=4.2 Score=45.58 Aligned_cols=18 Identities=28% Similarity=0.421 Sum_probs=15.6
Q ss_pred ccEEEecCCCCcHHHHHH
Q 014938 388 RNMLFYGPPGTGKTMVAR 405 (415)
Q Consensus 388 r~vLl~GPPGTGKT~lAk 405 (415)
+++|+.+|+|+|||+++.
T Consensus 55 ~~vlv~apTGsGKTlv~~ 72 (997)
T 4a4z_A 55 DSVFVAAHTSAGKTVVAE 72 (997)
T ss_dssp CEEEEECCTTSCSHHHHH
T ss_pred CCEEEEECCCCcHHHHHH
Confidence 589999999999998543
No 386
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=60.28 E-value=5 Score=45.07 Aligned_cols=18 Identities=33% Similarity=0.477 Sum_probs=16.1
Q ss_pred ccEEEecCCCCcHHHHHH
Q 014938 388 RNMLFYGPPGTGKTMVAR 405 (415)
Q Consensus 388 r~vLl~GPPGTGKT~lAk 405 (415)
+++|+.+|+|+|||.++-
T Consensus 102 ~~vLV~apTGSGKTlva~ 119 (1010)
T 2xgj_A 102 ESVLVSAHTSAGKTVVAE 119 (1010)
T ss_dssp CEEEEECCTTSCHHHHHH
T ss_pred CCEEEECCCCCChHHHHH
Confidence 589999999999999764
No 387
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=60.21 E-value=12 Score=40.60 Aligned_cols=45 Identities=18% Similarity=-0.024 Sum_probs=31.6
Q ss_pred ccCChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 360 IILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 360 vv~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
..+.+...+.+.++..... ..+|.||.-+.|+|||..+.++...+
T Consensus 235 ~~Lr~yQ~egv~~l~~~~~-------~~~~~ILademGlGKT~~ai~~i~~l 279 (800)
T 3mwy_W 235 GELRDFQLTGINWMAFLWS-------KGDNGILADEMGLGKTVQTVAFISWL 279 (800)
T ss_dssp SCCCTHHHHHHHHHHHHHT-------TTCCEEECCCTTSSTTHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHhh-------cCCCEEEEeCCCcchHHHHHHHHHHH
Confidence 4455666667776654432 14588999999999999888776543
No 388
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=60.00 E-value=1.5 Score=44.49 Aligned_cols=22 Identities=18% Similarity=0.305 Sum_probs=19.2
Q ss_pred CccEEEecCCCCcHHHHHHHHH
Q 014938 387 FRNMLFYGPPGTGKTMVAREIA 408 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA 408 (415)
..+|+|.|++|+|||+|..+|.
T Consensus 34 ~~kI~IvG~~~vGKSTLin~L~ 55 (423)
T 3qq5_A 34 RRYIVVAGRRNVGKSSFMNALV 55 (423)
T ss_dssp CEEEEEECSCSTTTTTTTTSSC
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 4699999999999999987664
No 389
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=59.93 E-value=4.8 Score=45.66 Aligned_cols=21 Identities=29% Similarity=0.471 Sum_probs=17.4
Q ss_pred ccEEEecCCCCcHHHHHHHHH
Q 014938 388 RNMLFYGPPGTGKTMVAREIA 408 (415)
Q Consensus 388 r~vLl~GPPGTGKT~lAkaLA 408 (415)
+++|+++|+|+|||+++-.+.
T Consensus 94 ~dvlv~ApTGSGKTl~~l~~i 114 (1104)
T 4ddu_A 94 KSFTMVAPTGVGKTTFGMMTA 114 (1104)
T ss_dssp CCEEECCSTTCCHHHHHHHHH
T ss_pred CCEEEEeCCCCcHHHHHHHHH
Confidence 699999999999999664443
No 390
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=59.74 E-value=4.1 Score=41.47 Aligned_cols=27 Identities=22% Similarity=0.308 Sum_probs=22.8
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
+..+|++.|.+++|||+|...|....|
T Consensus 42 ~~~~i~iiG~vd~GKSTLi~~Ll~~~g 68 (467)
T 1r5b_A 42 EHVNIVFIGHVDAGKSTLGGNILFLTG 68 (467)
T ss_dssp EEEEEEEEECGGGTHHHHHHHHHHHTT
T ss_pred CeeEEEEEECCCCCHHHHHHHHHHHhC
Confidence 356899999999999999999876544
No 391
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=59.19 E-value=48 Score=34.84 Aligned_cols=9 Identities=0% Similarity=0.143 Sum_probs=3.6
Q ss_pred HHHHHhcCc
Q 014938 82 ALREFNSSR 90 (415)
Q Consensus 82 a~r~l~~s~ 90 (415)
...+.+..|
T Consensus 443 ~~~~Y~~~~ 451 (592)
T 1f5n_A 443 LKKKYYEEP 451 (592)
T ss_dssp HHHHHHHSS
T ss_pred HHHHHHHhc
Confidence 333444444
No 392
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=58.99 E-value=5 Score=44.55 Aligned_cols=23 Identities=39% Similarity=0.657 Sum_probs=19.2
Q ss_pred ccEEEecCCCCcHHHHHHHHHHH
Q 014938 388 RNMLFYGPPGTGKTMVAREIARK 410 (415)
Q Consensus 388 r~vLl~GPPGTGKT~lAkaLA~~ 410 (415)
+++|+.+|+|+|||..+-..+..
T Consensus 264 ~~~ll~a~TGsGKTl~~~~~i~~ 286 (936)
T 4a2w_A 264 KNALICAPTGSGKTFVSILICEH 286 (936)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHT
T ss_pred CCEEEEeCCCchHHHHHHHHHHH
Confidence 58999999999999887666543
No 393
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=58.20 E-value=13 Score=41.84 Aligned_cols=25 Identities=24% Similarity=0.325 Sum_probs=20.5
Q ss_pred CccEEEecCCCCcHHHHHHHHHHHh
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
.+++|++.|+|||||.++-.++..+
T Consensus 300 ~~~gli~~~TGSGKT~t~~~l~~ll 324 (1038)
T 2w00_A 300 ESGGYIWHTTGSGKTLTSFKAARLA 324 (1038)
T ss_dssp GGSEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEecCCCCHHHHHHHHHHHH
Confidence 3688999999999999987776544
No 394
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=57.17 E-value=3.9 Score=43.32 Aligned_cols=17 Identities=35% Similarity=0.346 Sum_probs=15.4
Q ss_pred CccEEEecCCCCcHHHH
Q 014938 387 FRNMLFYGPPGTGKTMV 403 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~l 403 (415)
.+++|+.+|+|+|||+.
T Consensus 186 g~dvlv~a~TGSGKT~~ 202 (618)
T 2whx_A 186 KRLTIMDLHPGAGKTKR 202 (618)
T ss_dssp TCEEEECCCTTSSTTTT
T ss_pred CCeEEEEcCCCCCHHHH
Confidence 47999999999999985
No 395
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=56.03 E-value=4.6 Score=43.41 Aligned_cols=16 Identities=38% Similarity=0.731 Sum_probs=13.4
Q ss_pred cEEEecCCCCcHHHHH
Q 014938 389 NMLFYGPPGTGKTMVA 404 (415)
Q Consensus 389 ~vLl~GPPGTGKT~lA 404 (415)
.|+-||.+|+|||+.-
T Consensus 465 ~i~ayGqtgsGKT~Tm 480 (715)
T 4h1g_A 465 CVFAYGQTGSGKTFTM 480 (715)
T ss_dssp EEEEESSTTSSHHHHH
T ss_pred EEEccCCCCCchhhcc
Confidence 5677999999999853
No 396
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=55.13 E-value=2.8 Score=46.21 Aligned_cols=22 Identities=18% Similarity=0.250 Sum_probs=18.2
Q ss_pred CccEEEecCCCCcHHHHHHH-HH
Q 014938 387 FRNMLFYGPPGTGKTMVARE-IA 408 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAka-LA 408 (415)
..-+.+.||+|+|||+|++. |+
T Consensus 523 Geiv~I~G~nGSGKSTLl~~~L~ 545 (842)
T 2vf7_A 523 GVMTSVTGVSGSGKSTLVSQALV 545 (842)
T ss_dssp SSEEEEECCTTSSHHHHCCCCCH
T ss_pred CCEEEEEcCCCcCHHHHHHHHHH
Confidence 34577999999999999996 54
No 397
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=53.41 E-value=4 Score=45.70 Aligned_cols=21 Identities=24% Similarity=0.290 Sum_probs=17.9
Q ss_pred CccEEEecCCCCcHHHHHHHH
Q 014938 387 FRNMLFYGPPGTGKTMVAREI 407 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaL 407 (415)
..-+.+.||+|+|||+|++.|
T Consensus 668 GeivaI~G~nGSGKSTLl~~i 688 (993)
T 2ygr_A 668 GVLTSVTGVSGSGKSTLVNDI 688 (993)
T ss_dssp SSEEEEECSTTSSHHHHHTTT
T ss_pred CCEEEEEcCCCCCHHHHHHHH
Confidence 345778999999999999985
No 398
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=52.76 E-value=7.1 Score=38.33 Aligned_cols=23 Identities=17% Similarity=0.403 Sum_probs=19.6
Q ss_pred CccEEEecCCCCcHHHHHHHHHH
Q 014938 387 FRNMLFYGPPGTGKTMVAREIAR 409 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~ 409 (415)
.-.+||.|..++|||++.|-+=-
T Consensus 32 ~~klLlLG~geSGKST~~KQmki 54 (353)
T 1cip_A 32 EVKLLLLGAGESGKSTIVKQMKI 54 (353)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEcCCCCCchhHHHHHHH
Confidence 35899999999999999887643
No 399
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=51.56 E-value=4.1 Score=45.55 Aligned_cols=20 Identities=25% Similarity=0.471 Sum_probs=17.3
Q ss_pred ccEEEecCCCCcHHHHHHHH
Q 014938 388 RNMLFYGPPGTGKTMVAREI 407 (415)
Q Consensus 388 r~vLl~GPPGTGKT~lAkaL 407 (415)
.-+.+.||+|+|||+|++.|
T Consensus 651 eiv~I~G~nGSGKSTLl~~l 670 (972)
T 2r6f_A 651 TFVAVTGVSGSGKSTLVNEV 670 (972)
T ss_dssp SEEECCBCTTSSHHHHHTTT
T ss_pred CEEEEEcCCCCCHHHHHHHH
Confidence 45678999999999999985
No 400
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=49.86 E-value=9.1 Score=42.54 Aligned_cols=18 Identities=22% Similarity=0.244 Sum_probs=15.3
Q ss_pred CccEEEecCCCCcHHHHH
Q 014938 387 FRNMLFYGPPGTGKTMVA 404 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lA 404 (415)
..-+.+.||+|+|||+|+
T Consensus 610 Geiv~I~G~SGSGKSTLl 627 (916)
T 3pih_A 610 GVFVCVTGVSGSGKSSLV 627 (916)
T ss_dssp SSEEEEECSTTSSHHHHH
T ss_pred CcEEEEEccCCCChhhhH
Confidence 345778999999999997
No 401
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=49.61 E-value=14 Score=40.23 Aligned_cols=25 Identities=16% Similarity=0.314 Sum_probs=21.7
Q ss_pred CCccEEEecCCCCcHHHHHHHHHHH
Q 014938 386 PFRNMLFYGPPGTGKTMVAREIARK 410 (415)
Q Consensus 386 p~r~vLl~GPPGTGKT~lAkaLA~~ 410 (415)
....|+++|.+++|||++..+|...
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g~ 74 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVGR 74 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 3458999999999999999999753
No 402
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=46.82 E-value=5.7 Score=39.25 Aligned_cols=25 Identities=16% Similarity=0.058 Sum_probs=11.9
Q ss_pred CccEEEe-cCCCCcHHHHHHHHHHHh
Q 014938 387 FRNMLFY-GPPGTGKTMVAREIARKS 411 (415)
Q Consensus 387 ~r~vLl~-GPPGTGKT~lAkaLA~~l 411 (415)
.+-|.++ |-.|+|||+++..||..+
T Consensus 111 ~~vIav~s~KGGvGKTT~a~nLA~~L 136 (403)
T 3ez9_A 111 PYVIFVVNLKGGVSKTVSTVTLAHAL 136 (403)
T ss_dssp CEEEEECCC--------CHHHHHHHH
T ss_pred ceEEEEEcCCCCchHHHHHHHHHHHH
Confidence 3455565 779999999999998765
No 403
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=46.67 E-value=12 Score=35.93 Aligned_cols=25 Identities=20% Similarity=0.394 Sum_probs=19.9
Q ss_pred CccEEEecCCCCcHHHHHHHHHHHh
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
.+-|-+||-=|+|||+++--||..|
T Consensus 48 aKVIAIaGKGGVGKTTtavNLA~aL 72 (314)
T 3fwy_A 48 AKVFAVYGKGGIGKSTTSSNLSAAF 72 (314)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCccCHHHHHHHHHHHH
Confidence 4556689999999999888777543
No 404
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=46.51 E-value=8.9 Score=41.07 Aligned_cols=20 Identities=25% Similarity=0.468 Sum_probs=16.1
Q ss_pred CccEEEecCCCCcHHHHHHH
Q 014938 387 FRNMLFYGPPGTGKTMVARE 406 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAka 406 (415)
.+++|+.||+|+|||+..-.
T Consensus 232 ~~~vlv~ApTGSGKT~a~~l 251 (666)
T 3o8b_A 232 FQVAHLHAPTGSGKSTKVPA 251 (666)
T ss_dssp CEEEEEECCTTSCTTTHHHH
T ss_pred CCeEEEEeCCchhHHHHHHH
Confidence 46799999999999975543
No 405
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=46.36 E-value=24 Score=37.11 Aligned_cols=48 Identities=15% Similarity=0.193 Sum_probs=30.2
Q ss_pred CChhHHHHHHHHHHHHHhhhhhcCCCccEEEecCCCCcHHHHHHHHHHHh
Q 014938 362 LHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 362 ~~~~l~~~l~~l~~~~~~~k~~~~p~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
+.|...+.+.++........ .....+.||.-+.|+|||..+.++...+
T Consensus 56 LrpyQ~~gv~~l~~~~~~~~--~~~~~g~ILad~mGlGKT~~~i~~i~~l 103 (644)
T 1z3i_X 56 LRPHQREGVKFLWDCVTGRR--IENSYGCIMADEMGLGKTLQCITLIWTL 103 (644)
T ss_dssp CCHHHHHHHHHHHHHHTTSS--STTCCEEEECCCTTSCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhhccc--ccCCCCeEeeeCCCchHHHHHHHHHHHH
Confidence 34555556665544332110 0224689999999999999888776543
No 406
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=45.59 E-value=7.7 Score=46.08 Aligned_cols=19 Identities=37% Similarity=0.572 Sum_probs=16.6
Q ss_pred CccEEEecCCCCcHHHHHH
Q 014938 387 FRNMLFYGPPGTGKTMVAR 405 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAk 405 (415)
..|+|+..|+|+|||+++-
T Consensus 942 ~~nvlv~APTGSGKTliae 960 (1724)
T 4f92_B 942 DDNVFVGAPTGSGKTICAE 960 (1724)
T ss_dssp CSCEEEECCTTSCCHHHHH
T ss_pred CCcEEEEeCCCCCchHHHH
Confidence 3699999999999999764
No 407
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=41.18 E-value=9.9 Score=45.16 Aligned_cols=19 Identities=47% Similarity=0.695 Sum_probs=16.7
Q ss_pred ccEEEecCCCCcHHHHHHH
Q 014938 388 RNMLFYGPPGTGKTMVARE 406 (415)
Q Consensus 388 r~vLl~GPPGTGKT~lAka 406 (415)
.|+|++-|+|+|||++|-.
T Consensus 96 ~N~lv~APTGsGKTlva~l 114 (1724)
T 4f92_B 96 ENLLLCAPTGAGKTNVALM 114 (1724)
T ss_dssp CCEEEECCTTSCCHHHHHH
T ss_pred CcEEEEeCCcchHHHHHHH
Confidence 5999999999999997743
No 408
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=41.10 E-value=15 Score=40.30 Aligned_cols=25 Identities=28% Similarity=0.401 Sum_probs=22.2
Q ss_pred CccEEEecC-CCCcHHHHHHHHHHHh
Q 014938 387 FRNMLFYGP-PGTGKTMVAREIARKS 411 (415)
Q Consensus 387 ~r~vLl~GP-PGTGKT~lAkaLA~~l 411 (415)
.+.+++.|+ +|+|||+++-+|++.+
T Consensus 34 ~~~l~I~gt~s~vGKT~vt~gL~r~l 59 (831)
T 4a0g_A 34 HPTYLIWSANTSLGKTLVSTGIAASF 59 (831)
T ss_dssp SCEEEEEESSSSSCHHHHHHHHHHHH
T ss_pred cccEEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999 9999999999998765
No 409
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=39.72 E-value=12 Score=41.17 Aligned_cols=17 Identities=35% Similarity=0.583 Sum_probs=14.7
Q ss_pred cEEEecCCCCcHHHHHH
Q 014938 389 NMLFYGPPGTGKTMVAR 405 (415)
Q Consensus 389 ~vLl~GPPGTGKT~lAk 405 (415)
=++|.|++|+|||+||-
T Consensus 38 l~viTGvSGSGKSSLaf 54 (842)
T 2vf7_A 38 LVVFTGVSGSGKSSLAF 54 (842)
T ss_dssp EEEEESSTTSSHHHHHT
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46789999999999984
No 410
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=38.87 E-value=15 Score=42.03 Aligned_cols=26 Identities=27% Similarity=0.295 Sum_probs=22.5
Q ss_pred CCCccEEEecCCCCcHHHHHHHHHHH
Q 014938 385 APFRNMLFYGPPGTGKTMVAREIARK 410 (415)
Q Consensus 385 ~p~r~vLl~GPPGTGKT~lAkaLA~~ 410 (415)
.+..+|.+.|++|+|||+|..+|...
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~ 319 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTV 319 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhh
Confidence 44568999999999999999999764
No 411
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=38.73 E-value=12 Score=41.85 Aligned_cols=18 Identities=28% Similarity=0.499 Sum_probs=15.2
Q ss_pred ccEEEecCCCCcHHHHHH
Q 014938 388 RNMLFYGPPGTGKTMVAR 405 (415)
Q Consensus 388 r~vLl~GPPGTGKT~lAk 405 (415)
+=++|.|++|+|||+||-
T Consensus 45 ~lvv~tG~SGSGKSSLaf 62 (972)
T 2r6f_A 45 KLVVLTGLSGSGKSSLAF 62 (972)
T ss_dssp SEEEEEESTTSSHHHHHT
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 347799999999999983
No 412
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=38.66 E-value=12 Score=41.94 Aligned_cols=17 Identities=35% Similarity=0.591 Sum_probs=14.9
Q ss_pred cEEEecCCCCcHHHHHH
Q 014938 389 NMLFYGPPGTGKTMVAR 405 (415)
Q Consensus 389 ~vLl~GPPGTGKT~lAk 405 (415)
=++|.|++|+|||+||-
T Consensus 48 lvv~tG~SGSGKSSLaf 64 (993)
T 2ygr_A 48 LIVFTGLSGSGKSSLAF 64 (993)
T ss_dssp EEEEEESTTSSHHHHHT
T ss_pred EEEEECCCCCcHHHHHH
Confidence 47799999999999983
No 413
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=38.43 E-value=15 Score=36.81 Aligned_cols=21 Identities=19% Similarity=0.570 Sum_probs=18.5
Q ss_pred ccEEEecCCCCcHHHHHHHHH
Q 014938 388 RNMLFYGPPGTGKTMVAREIA 408 (415)
Q Consensus 388 r~vLl~GPPGTGKT~lAkaLA 408 (415)
-.+||.|..++|||++.|-|=
T Consensus 41 ~klLLLG~geSGKSTi~KQmk 61 (402)
T 1azs_C 41 HRLLLLGAGESGKSTIVKQMR 61 (402)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred ceEEEecCCCCchhhHHHHHH
Confidence 479999999999999998763
No 414
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=38.04 E-value=34 Score=37.40 Aligned_cols=25 Identities=28% Similarity=0.403 Sum_probs=21.1
Q ss_pred CccEEEecCCCCcHHHHHHHHHHHh
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
...||+.|-+|.|||.-+|.|-+++
T Consensus 156 nQsIiisGESGAGKTe~tK~i~~yl 180 (795)
T 1w7j_A 156 NQSIIVSGESGAGKTVSAKYAMRYF 180 (795)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCcchHHHHHHHHH
Confidence 3589999999999999988876554
No 415
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=37.32 E-value=35 Score=37.18 Aligned_cols=25 Identities=24% Similarity=0.440 Sum_probs=21.0
Q ss_pred CccEEEecCCCCcHHHHHHHHHHHh
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
...||+.|-+|.|||.-+|.|-+++
T Consensus 171 nQsIiiSGESGAGKTe~tK~im~yl 195 (783)
T 4db1_A 171 NQSILITGESGAGKTVNTKRVIQYF 195 (783)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CceEEEeCCCCCCCchHHHHHHHhh
Confidence 4589999999999999988776554
No 416
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=37.29 E-value=13 Score=36.79 Aligned_cols=21 Identities=24% Similarity=0.469 Sum_probs=19.2
Q ss_pred cEEEecCCCCcHHHHHHHHHH
Q 014938 389 NMLFYGPPGTGKTMVAREIAR 409 (415)
Q Consensus 389 ~vLl~GPPGTGKT~lAkaLA~ 409 (415)
.|-|.|.|.+|||+|-.+|.+
T Consensus 74 ~V~ivG~PNvGKSTL~n~Lt~ 94 (376)
T 4a9a_A 74 SVGFVGFPSVGKSTLLSKLTG 94 (376)
T ss_dssp EEEEECCCCHHHHHHHHHHHS
T ss_pred eEEEECCCCCCHHHHHHHHhC
Confidence 588999999999999999874
No 417
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=37.21 E-value=34 Score=38.59 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=21.1
Q ss_pred CccEEEecCCCCcHHHHHHHHHHHh
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
...||+.|-+|.|||.-++.|-+++
T Consensus 144 nQsIiiSGESGAGKTestK~im~yL 168 (1052)
T 4anj_A 144 SQSIIVSGESGAGKTENTKFVLRYL 168 (1052)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CceEEEecCCCCCHHHHHHHHHHHH
Confidence 3589999999999999988776554
No 418
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=37.10 E-value=34 Score=36.78 Aligned_cols=25 Identities=24% Similarity=0.383 Sum_probs=20.9
Q ss_pred CccEEEecCCCCcHHHHHHHHHHHh
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
...||+.|-+|.|||..+|.|-+++
T Consensus 94 nQsIiisGESGAGKTe~tK~i~~yl 118 (697)
T 1lkx_A 94 NQCVIISGESGAGKTEASKKIMQFL 118 (697)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CcEEEecCCCCCCchhhHHHHHHHH
Confidence 3589999999999999988876554
No 419
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=34.81 E-value=22 Score=39.09 Aligned_cols=25 Identities=24% Similarity=0.324 Sum_probs=20.7
Q ss_pred CccEEEecCCCCcHHHHHHHHHHHh
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
...||+.|-+|.|||.-+|.|-+++
T Consensus 169 nQsIiiSGESGAGKTe~tK~i~~yl 193 (837)
T 1kk8_A 169 NQSCLITGESGAGKTENTKKVIMYL 193 (837)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CcEEEEeCCCCCCchhhHHHHHHHH
Confidence 3579999999999999988775543
No 420
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=34.72 E-value=2.4e+02 Score=28.88 Aligned_cols=67 Identities=16% Similarity=0.169 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 014938 96 FDIMRKQEQTRLAELDVEKVHYEAIQSQVDVERQRKLAEEHRNLVQQKAQARAQGLRNEDELARKRLQTDHEA 168 (415)
Q Consensus 96 ~~~~~~qe~t~q~e~~~~~~e~~~~~~~~~~~~~~~~~ee~r~~~~~~~~~~~~~a~y~D~L~rkr~q~ele~ 168 (415)
++-++.--...+++++++++++.+.-+..+.+-..+. ++..+.+++-++.+++|+..|+ .|+.++..
T Consensus 18 larvqkana~aka~Ye~~~ae~~a~n~~i~aeNeaik----krNa~aka~Ye~~l~kY~~dla--kY~~~~Ae 84 (497)
T 3iox_A 18 LARVQKANADAKAAYEAAVAANNAANAALTAENTAIK----KRNADAKADYEAKLAKYQADLA--KYQKDLAD 84 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
No 421
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=34.53 E-value=39 Score=36.87 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=20.9
Q ss_pred CccEEEecCCCCcHHHHHHHHHHHh
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
...||+.|-+|.|||..+|.|-+++
T Consensus 140 nQsIiiSGESGAGKTe~tK~i~~yl 164 (784)
T 2v26_A 140 SQSIIVSGESGAGKTENTKFVLRYL 164 (784)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CcEEEEcCCCCCCceehHHHHHHHH
Confidence 3589999999999999888776553
No 422
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=34.50 E-value=4.2e+02 Score=27.63 Aligned_cols=28 Identities=11% Similarity=0.285 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014938 187 KEQARRSTEEQIQAQQRLTEKERAEIER 214 (415)
Q Consensus 187 qE~~r~~~e~~~~~~r~~~e~e~~~l~~ 214 (415)
+++..++.++.++...+.++++...|..
T Consensus 506 l~~~~~~~~~~~~~~~~~~~e~~~ql~~ 533 (592)
T 1f5n_A 506 LHEMQRKNEQMMEQKERSYQEHLKQLTE 533 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444433
No 423
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=34.47 E-value=39 Score=36.74 Aligned_cols=24 Identities=25% Similarity=0.462 Sum_probs=20.2
Q ss_pred CccEEEecCCCCcHHHHHHHHHHH
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARK 410 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~ 410 (415)
...||+.|-+|.|||.-+|.|-++
T Consensus 172 nQsIiisGESGAGKTe~tK~i~~y 195 (770)
T 1w9i_A 172 NQSLLITGESGAGKTENTKKVIQY 195 (770)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcEEEEecCCCCcchHHHHHHHHH
Confidence 458999999999999988876554
No 424
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=33.70 E-value=23 Score=35.99 Aligned_cols=24 Identities=17% Similarity=0.156 Sum_probs=19.8
Q ss_pred CccEEEecCCCCcHHHHHHHHHHH
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARK 410 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~ 410 (415)
..-|-+.|||+|||++|...|.+.
T Consensus 67 v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 67 VVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEECCCCCcHHHHHHHHhhh
Confidence 334558999999999999999865
No 425
>4ehx_A Tetraacyldisaccharide 4'-kinase; membrane protein, lipid A, P-loop, P-loop containing nucleoside triphosphate hydrolase; HET: EPE; 1.90A {Aquifex aeolicus} PDB: 4ehy_A* 4ehw_A
Probab=32.84 E-value=19 Score=34.69 Aligned_cols=25 Identities=24% Similarity=0.169 Sum_probs=20.4
Q ss_pred CccEEEec---CCCCcHHHHHHHHHHHh
Q 014938 387 FRNMLFYG---PPGTGKTMVAREIARKS 411 (415)
Q Consensus 387 ~r~vLl~G---PPGTGKT~lAkaLA~~l 411 (415)
+-.|+..| --|||||-++.+|++.+
T Consensus 35 ~vPVI~VGNitvGGTGKTP~vi~L~~~L 62 (315)
T 4ehx_A 35 PVPVISVGNLSVGGSGKTSFVMYLADLL 62 (315)
T ss_dssp SSCEEEEEESBSSCCSHHHHHHHHHHHT
T ss_pred CCCEEEECCEEeCCCChHHHHHHHHHHH
Confidence 34577777 47999999999999876
No 426
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=31.91 E-value=41 Score=37.63 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=21.0
Q ss_pred CccEEEecCCCCcHHHHHHHHHHHh
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
...||+.|-+|.|||..+|.|-+++
T Consensus 146 ~QsIiisGESGAGKTe~~K~i~~yl 170 (995)
T 2ycu_A 146 DQSILCTGESGAGKTENTKKVIQYL 170 (995)
T ss_dssp CEEEEEECBTTSSHHHHHHHHHHHH
T ss_pred CcEEEecCCCCCCchhhHHHHHHHH
Confidence 4589999999999999988876553
No 427
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=31.90 E-value=2.1e+02 Score=23.44 Aligned_cols=23 Identities=17% Similarity=0.114 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 014938 197 QIQAQQRLTEKERAEIERETIRV 219 (415)
Q Consensus 197 ~~~~~r~~~e~e~~~l~~~~~~~ 219 (415)
++.+++++|+....+++.....+
T Consensus 69 E~ae~k~KYD~~lqe~ese~~~k 91 (115)
T 3vem_A 69 KMAEVQAEFRRKFHEVEAEHNTR 91 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444333
No 428
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=31.39 E-value=42 Score=37.64 Aligned_cols=25 Identities=24% Similarity=0.416 Sum_probs=20.7
Q ss_pred CccEEEecCCCCcHHHHHHHHHHHh
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
...||+.|-+|.|||..+|.|-+++
T Consensus 172 ~QsIiisGESGAGKTe~~K~i~~yl 196 (1010)
T 1g8x_A 172 NQSLLITGESGAGKTENTKKVIQYL 196 (1010)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCcchHHHHHHHHH
Confidence 3589999999999999988765543
No 429
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=30.97 E-value=4.1e+02 Score=27.28 Aligned_cols=6 Identities=50% Similarity=0.429 Sum_probs=2.2
Q ss_pred Hhhhhh
Q 014938 256 AAINTT 261 (415)
Q Consensus 256 e~ik~~ 261 (415)
+.+++.
T Consensus 359 ~~~n~~ 364 (551)
T 2b5u_A 359 DAANKT 364 (551)
T ss_dssp HHHHHH
T ss_pred HhhhhH
Confidence 333333
No 430
>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Probab=26.50 E-value=38 Score=32.14 Aligned_cols=22 Identities=18% Similarity=0.371 Sum_probs=18.5
Q ss_pred CccEEEecCCCCcHHHHHHHHHHHh
Q 014938 387 FRNMLFYGPPGTGKTMVAREIARKS 411 (415)
Q Consensus 387 ~r~vLl~GPPGTGKT~lAkaLA~~l 411 (415)
.+-|+|.|| ||+++.+.|....
T Consensus 105 ~r~ivl~GP---gK~tl~~~L~~~~ 126 (295)
T 1kjw_A 105 ARPIIILGP---TKDRANDDLLSEF 126 (295)
T ss_dssp CCCEEEEST---THHHHHHHHHHHC
T ss_pred CCEEEEECC---CHHHHHHHHHhhC
Confidence 467999998 7999999998754
No 431
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=26.07 E-value=2.1e+02 Score=22.50 Aligned_cols=29 Identities=14% Similarity=0.185 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 014938 136 HRNLVQQKAQARAQGLRNEDELARKRLQT 164 (415)
Q Consensus 136 ~r~~~~~~~~~~~~~a~y~D~L~rkr~q~ 164 (415)
|.+.++.+..+.+-...|++++.|=|.++
T Consensus 56 r~tvyeLE~~h~kmKq~YEeEI~rLr~eL 84 (92)
T 3vp9_A 56 RNTVYERELTHRKMKDAYEEEIKHLKLGL 84 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677888889999999999999555533
No 432
>3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A*
Probab=24.32 E-value=59 Score=23.61 Aligned_cols=26 Identities=12% Similarity=0.115 Sum_probs=23.5
Q ss_pred cEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 389 NMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 389 ~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
.|.||+-|+|+-..-++.+-...|++
T Consensus 5 ~v~ly~~~~Cp~C~~~~~~L~~~~i~ 30 (89)
T 3msz_A 5 KVKIYTRNGCPYCVWAKQWFEENNIA 30 (89)
T ss_dssp CEEEEECTTCHHHHHHHHHHHHTTCC
T ss_pred EEEEEEcCCChhHHHHHHHHHHcCCC
Confidence 58899999999999999999988865
No 433
>2zci_A Phosphoenolpyruvate carboxykinase [GTP], phosphoenolpyruvate; GTP-dependent, signaling protein, lyase; 2.30A {Corynebacterium glutamicum}
Probab=24.21 E-value=23 Score=37.19 Aligned_cols=17 Identities=29% Similarity=0.264 Sum_probs=13.5
Q ss_pred cEEEecCCCCcHHHHHH
Q 014938 389 NMLFYGPPGTGKTMVAR 405 (415)
Q Consensus 389 ~vLl~GPPGTGKT~lAk 405 (415)
.|-.-+|+|||||.||-
T Consensus 265 yvaaAfPSacGKTnlAM 281 (610)
T 2zci_A 265 HIAAAFPSACGKTNLAM 281 (610)
T ss_dssp EEEEECSSSHHHHHHHT
T ss_pred EEEEecccccchhhHhh
Confidence 34445899999999985
No 434
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=23.61 E-value=1.3e+02 Score=31.84 Aligned_cols=27 Identities=22% Similarity=0.378 Sum_probs=21.6
Q ss_pred ccEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 388 RNMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 388 r~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
+..++.|.+|+|||+++-.+...++-|
T Consensus 33 ~~~~l~g~~gs~k~~~~a~~~~~~~~~ 59 (661)
T 2d7d_A 33 KHQTLLGATGTGKTFTVSNLIKEVNKP 59 (661)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHHCCC
T ss_pred CcEEEECcCCcHHHHHHHHHHHHhCCC
Confidence 346788999999999998887766543
No 435
>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1
Probab=23.38 E-value=66 Score=22.45 Aligned_cols=26 Identities=8% Similarity=0.226 Sum_probs=22.2
Q ss_pred cEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 389 NMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 389 ~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
.|.+||-|+|+-..-++.+-...|++
T Consensus 2 ~i~~y~~~~C~~C~~~~~~l~~~~i~ 27 (75)
T 1r7h_A 2 SITLYTKPACVQCTATKKALDRAGLA 27 (75)
T ss_dssp CEEEEECTTCHHHHHHHHHHHHTTCC
T ss_pred eEEEEeCCCChHHHHHHHHHHHcCCC
Confidence 37789999999999999888888765
No 436
>2q2f_A Selenoprotein S; anti-parallel coiled-coil, endoplasmic reticulum, membrane, selenocysteine, transmembrane, structural genomics; HET: MSE; 1.50A {Homo sapiens}
Probab=22.83 E-value=2.7e+02 Score=21.65 Aligned_cols=41 Identities=15% Similarity=0.101 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 014938 99 MRKQEQTRLAELDVEKVHYEAIQSQVDVERQRKLAEEHRNLV 140 (415)
Q Consensus 99 ~~~qe~t~q~e~~~~~~e~~~~~~~~~~~~~~~~~ee~r~~~ 140 (415)
.+-||..-..- -.-+.++.|+.++++..+.+.+.|.+|.-+
T Consensus 43 v~RQEAl~aaR-lRMQEeldAqAe~~keKQkqlEEeKR~qkI 83 (89)
T 2q2f_A 43 VKRQEALAAAR-LKMQEELNAQVEKHKEKLKQLEEEKRRQKI 83 (89)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444433333 122445666666666666666655555443
No 437
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=22.17 E-value=47 Score=33.86 Aligned_cols=23 Identities=17% Similarity=0.161 Sum_probs=18.3
Q ss_pred ccEEEecCCCCcHHHHHHHHHHH
Q 014938 388 RNMLFYGPPGTGKTMVAREIARK 410 (415)
Q Consensus 388 r~vLl~GPPGTGKT~lAkaLA~~ 410 (415)
.-|-+.||++||||+|...|-+.
T Consensus 68 ~vvsv~G~~~~gks~l~N~ll~~ 90 (457)
T 4ido_A 68 VAVSVAGAFRKGKSFLMDFMLRY 90 (457)
T ss_dssp EEEEEEEBTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCchhHHHHHHHHH
Confidence 34448999999999999977554
No 438
>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A*
Probab=21.67 E-value=74 Score=22.66 Aligned_cols=26 Identities=12% Similarity=0.015 Sum_probs=22.4
Q ss_pred cEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 389 NMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 389 ~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
.|.+|+-|+|+-...++.+-...|++
T Consensus 2 ~i~~y~~~~C~~C~~~~~~l~~~~i~ 27 (82)
T 1fov_A 2 NVEIYTKETCPYCHRAKALLSSKGVS 27 (82)
T ss_dssp CEEEEECSSCHHHHHHHHHHHHHTCC
T ss_pred cEEEEECCCChhHHHHHHHHHHCCCC
Confidence 57889999999999999888888765
No 439
>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}
Probab=21.42 E-value=60 Score=24.03 Aligned_cols=27 Identities=15% Similarity=0.148 Sum_probs=23.8
Q ss_pred ccEEEecCCCCcHHHHHHHHHHHhCCC
Q 014938 388 RNMLFYGPPGTGKTMVAREIARKSVWC 414 (415)
Q Consensus 388 r~vLl~GPPGTGKT~lAkaLA~~lg~~ 414 (415)
..|.|||-|+|+...-++.+-..+|++
T Consensus 12 ~~v~ly~~~~Cp~C~~~~~~L~~~gi~ 38 (92)
T 3ic4_A 12 AEVLMYGLSTCPHCKRTLEFLKREGVD 38 (92)
T ss_dssp SSSEEEECTTCHHHHHHHHHHHHHTCC
T ss_pred ceEEEEECCCChHHHHHHHHHHHcCCC
Confidence 358899999999999999999888875
No 440
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=20.89 E-value=1.2e+02 Score=29.15 Aligned_cols=25 Identities=16% Similarity=0.122 Sum_probs=20.9
Q ss_pred ccEEEecCCCCcHHHHHHHHHHHhC
Q 014938 388 RNMLFYGPPGTGKTMVAREIARKSV 412 (415)
Q Consensus 388 r~vLl~GPPGTGKT~lAkaLA~~lg 412 (415)
-=|+|-|.-|+||++.++.|...++
T Consensus 87 vlIvfEG~DgAGKgt~Ik~L~e~Ld 111 (304)
T 3czq_A 87 VMAVFEGRDAAGKGGAIHATTANMN 111 (304)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTSC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhc
Confidence 3466789999999999999987664
Done!