BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014939
(415 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4GYG|A Chain A, Crystal Structure Of The Rio2 Kinase From Chaetomium
Thermophilum
Length = 397
Score = 320 bits (820), Expect = 8e-88, Method: Compositional matrix adjust.
Identities = 166/341 (48%), Positives = 222/341 (65%), Gaps = 33/341 (9%)
Query: 1 MKLDVDVLRYLSKDDFRVLTAVEMGMRNHEIVPSELVHRIASLKHG--GTYKVLKNLLRY 58
MKLD +R+L+ +D+RVLTAVEMG +NHEIVP+ L+ +IA L+ G G +K + L +
Sbjct: 2 MKLDTRAMRHLTAEDWRVLTAVEMGSKNHEIVPTPLIEKIARLRGGSSGVHKSIATLAKA 61
Query: 59 KLLHH-DSSKYDGFRLTYLGYDFLAIKTLVNRGVFTAVGRQLGVGKESDIFEVAREDGTV 117
L+ +KYDG+RLTY G D+LA+ T R +VG ++GVGKESDI VA E G
Sbjct: 62 GLIARMKEAKYDGYRLTYGGLDYLALHTHAARKDVYSVGSRIGVGKESDIMIVADEKGKQ 121
Query: 118 LAMKLHRLGRTSFRAVKSKRDYLRHRNSYNWLYLSRLAALKEFAFMKALEDHGFPVPNAV 177
+K+HRLGR SFR VK+ RDYLR+R++ +W+YLSRLAA+KEFAFMKAL + GFPVP +
Sbjct: 122 KVLKIHRLGRISFRTVKANRDYLRNRSTGSWMYLSRLAAIKEFAFMKALYEEGFPVPEPI 181
Query: 178 DCNRHCVIMSLVQGYPLVQVNQLQNPDSVFETIIGLVVRLAEHGLIHCDFNEFNIMI--- 234
+RH ++MSLV P+ QV+ + +P S++ +I L++RLA+HGLIH DFNEFNI+I
Sbjct: 182 AQSRHTIVMSLVDALPMRQVSSVPDPASLYADLIALILRLAKHGLIHGDFNEFNILIREE 241
Query: 235 ---DDDEKVTM----IDFPQMVSVSHQNAQMYFDRDVECIFKFFRKRFHLNFQXXXXXXX 287
+D +T+ IDFPQMVS+ H NA+MYFDRDV+CI +FF +RFH
Sbjct: 242 KDAEDPSSITLTPIIIDFPQMVSMDHPNAEMYFDRDVQCIKRFFERRFHFVSTTPGPF-- 299
Query: 288 XXXXXXXXXXRLSFASISKTAG-----FLDKELAASGFTRK 323
+ KT G LD L ASGFT+K
Sbjct: 300 -------------YKDAKKTVGKDGAKRLDAALEASGFTKK 327
>pdb|4GYI|A Chain A, Crystal Structure Of The Rio2
Kinase-AdpMG2+-Phosphoaspartate Complex From Chaetomium
Thermophilum
Length = 397
Score = 317 bits (813), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 165/341 (48%), Positives = 221/341 (64%), Gaps = 33/341 (9%)
Query: 1 MKLDVDVLRYLSKDDFRVLTAVEMGMRNHEIVPSELVHRIASLKHG--GTYKVLKNLLRY 58
MKLD +R+L+ +D+RVLTAVEMG +NHEIVP+ L+ +IA L+ G G +K + L +
Sbjct: 2 MKLDTRAMRHLTAEDWRVLTAVEMGSKNHEIVPTPLIEKIARLRGGSSGVHKSIATLAKA 61
Query: 59 KLLHH-DSSKYDGFRLTYLGYDFLAIKTLVNRGVFTAVGRQLGVGKESDIFEVAREDGTV 117
L+ +KYDG+RLTY G D+LA+ T R +VG ++GVGKESDI VA E G
Sbjct: 62 GLIARMKEAKYDGYRLTYGGLDYLALHTHAARKDVYSVGSRIGVGKESDIMIVADEKGKQ 121
Query: 118 LAMKLHRLGRTSFRAVKSKRDYLRHRNSYNWLYLSRLAALKEFAFMKALEDHGFPVPNAV 177
+K+HRLGR SFR VK+ RDYLR+R++ +W+YLSRLAA+KEFAFMKAL + GFPVP +
Sbjct: 122 KVLKIHRLGRISFRTVKANRDYLRNRSTGSWMYLSRLAAIKEFAFMKALYEEGFPVPEPI 181
Query: 178 DCNRHCVIMSLVQGYPLVQVNQLQNPDSVFETIIGLVVRLAEHGLIHCDFNEFNIMI--- 234
+RH ++MSLV P+ QV+ + +P S++ +I L++RLA+HGLIH DFNEFNI+I
Sbjct: 182 AQSRHTIVMSLVDALPMRQVSSVPDPASLYADLIALILRLAKHGLIHGDFNEFNILIREE 241
Query: 235 ---DDDEKVTM----IDFPQMVSVSHQNAQMYFDRDVECIFKFFRKRFHLNFQXXXXXXX 287
+D +T+ I FPQMVS+ H NA+MYFDRDV+CI +FF +RFH
Sbjct: 242 KDAEDPSSITLTPIIIXFPQMVSMDHPNAEMYFDRDVQCIKRFFERRFHFVSTTPGPF-- 299
Query: 288 XXXXXXXXXXRLSFASISKTAG-----FLDKELAASGFTRK 323
+ KT G LD L ASGFT+K
Sbjct: 300 -------------YKDAKKTVGKDGAKRLDAALEASGFTKK 327
>pdb|1TQI|A Chain A, Crystal Structure Of A. Fulgidus Rio2 Serine Protein
Kinase
pdb|1TQM|A Chain A, Crystal Structure Of A. Fulgidus Rio2 Serine Protein
Kinase Bound To Amppnp
pdb|1ZAO|A Chain A, Crystal Structure Of A.Fulgidus Rio2 Kinase Complexed With
Atp And Manganese Ions
pdb|1ZAR|A Chain A, Crystal Structure Of A.Fulgidus Rio2 Kinase Complexed With
Adp And Manganese Ions
Length = 282
Score = 132 bits (331), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 75/265 (28%), Positives = 138/265 (52%), Gaps = 8/265 (3%)
Query: 11 LSKDDFRVLTAVEMGMRNHEIVPSELVHRIASLKHGGTYKVLKNLLRYKLLHHDSSKYDG 70
+ K +R++ A+ + ++E VP +L+ A + +LK L +++ + Y+G
Sbjct: 10 MGKHSWRIMDAIFKNLWDYEYVPLQLISSHARIGEEKARNILKYLSDLRVVQNRQKDYEG 69
Query: 71 FRLTYLGYDFLAIKTLVNRGVFTAVGRQLGVGKESDIFEVAREDGTVLAMKLHRLGRTSF 130
T++G ++ LV G A+G+ +G GKES +F E +K H++G TSF
Sbjct: 70 STFTFIGLSLYSLHRLVRSGKVDAIGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSF 129
Query: 131 RAVKSKRDYLRHRNSYNWLYLSRLAALKEFAFMKALEDHGFPVPNAVDCNRHCVIMSLVQ 190
+ VK KRDY ++ L+ +A EF ++ L+ G VP + V+M L+
Sbjct: 130 KKVKEKRDY----GDLHFSVLAIRSARNEFRALQKLQ--GLAVPKVYAWEGNAVLMELID 183
Query: 191 GYPLVQVNQLQNPDSVFETIIGLVVRLAEHGLIHCDFNEFNIMIDDDEKVTMIDFPQMVS 250
L +V +++NPD V + I+ V + G++H D +++N+++ +E + +IDFPQ V
Sbjct: 184 AKELYRV-RVENPDEVLDMILEEVAKFYHRGIVHGDLSQYNVLV-SEEGIWIIDFPQSVE 241
Query: 251 VSHQNAQMYFDRDVECIFKFFRKRF 275
V + + +RDV I +F + +
Sbjct: 242 VGEEGWREILERDVRNIITYFSRTY 266
>pdb|1TQP|A Chain A, Crystal Structure Of A. Fulgidus Rio2 Serine Protein
Kinase Bound To Atp
Length = 282
Score = 126 bits (317), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 74/264 (28%), Positives = 134/264 (50%), Gaps = 8/264 (3%)
Query: 12 SKDDFRVLTAVEMGMRNHEIVPSELVHRIASLKHGGTYKVLKNLLRYKLLHHDSSKYDGF 71
K +R+ A+ + ++E VP +L+ A + +LK L +++ + Y+G
Sbjct: 11 GKHSWRIXDAIFKNLWDYEYVPLQLISSHARIGEEKARNILKYLSDLRVVQNRQKDYEGS 70
Query: 72 RLTYLGYDFLAIKTLVNRGVFTAVGRQLGVGKESDIFEVAREDGTVLAMKLHRLGRTSFR 131
T++G ++ LV G A+G+ G GKES +F E +K H++G TSF+
Sbjct: 71 TFTFIGLSLYSLHRLVRSGKVDAIGKLXGEGKESAVFNCYSEKFGECVVKFHKVGHTSFK 130
Query: 132 AVKSKRDYLRHRNSYNWLYLSRLAALKEFAFMKALEDHGFPVPNAVDCNRHCVIMSLVQG 191
VK KRDY ++ L+ +A EF ++ L+ G VP + V+ L+
Sbjct: 131 KVKEKRDY----GDLHFSVLAIRSARNEFRALQKLQ--GLAVPKVYAWEGNAVLXELIDA 184
Query: 192 YPLVQVNQLQNPDSVFETIIGLVVRLAEHGLIHCDFNEFNIMIDDDEKVTMIDFPQMVSV 251
L +V +++NPD V + I+ V + G++H D +++N+++ +E + +IDFPQ V V
Sbjct: 185 KELYRV-RVENPDEVLDXILEEVAKFYHRGIVHGDLSQYNVLV-SEEGIWIIDFPQSVEV 242
Query: 252 SHQNAQMYFDRDVECIFKFFRKRF 275
+ + +RDV I +F + +
Sbjct: 243 GEEGWREILERDVRNIITYFSRTY 266
>pdb|3RE4|A Chain A, Crystal Structure Of Archaeoglobus Fulgidus Rio1 Kinase
Bound To Toyocamycin.
pdb|3RE4|B Chain B, Crystal Structure Of Archaeoglobus Fulgidus Rio1 Kinase
Bound To Toyocamycin
Length = 258
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 100/205 (48%), Gaps = 22/205 (10%)
Query: 86 LVNRGVFTAVGRQLGVGKESDIFEV-AREDGTVLAM--KLHRLGRTSFRAVKSKRDYLRH 142
L +G TA+G + GKE+++F DG +AM K++R+ + F + +YL
Sbjct: 42 LSAKGYITAMGGVISTGKEANVFYADGVFDGKPVAMAVKIYRIETSEFDKMD---EYLYG 98
Query: 143 RNSYNWLYLSR-----LAALKEFAFMKALEDHGFPVPNAVDCNRHCVIMSLV-----QGY 192
++ +S + KEF ++ ++ G VP ++ ++M +
Sbjct: 99 DERFDMRRISPKEKVFIWTEKEFRNLERAKEAGVSVPQPYTYMKNVLLMEFIGEDELPAP 158
Query: 193 PLVQVN-QLQNPD--SVFETIIGLVVRL-AEHGLIHCDFNEFNIMIDDDEKVTMIDFPQM 248
LV++ +L+ D +F ++ V RL E L+H D +E+NIM D KV ID Q
Sbjct: 159 TLVELGRELKELDVEGIFNDVVENVKRLYQEAELVHADLSEYNIMYID--KVYFIDMGQA 216
Query: 249 VSVSHQNAQMYFDRDVECIFKFFRK 273
V++ H A+ Y +RDV I +FF K
Sbjct: 217 VTLRHPMAESYLERDVRNIIRFFSK 241
>pdb|1ZP9|A Chain A, Crystal Structure Of Full-Legnth A.Fulgidus Rio1 Serine
Kinase Bound To Atp And Mn2+ Ions.
pdb|1ZP9|B Chain B, Crystal Structure Of Full-Legnth A.Fulgidus Rio1 Serine
Kinase Bound To Atp And Mn2+ Ions.
pdb|1ZP9|C Chain C, Crystal Structure Of Full-Legnth A.Fulgidus Rio1 Serine
Kinase Bound To Atp And Mn2+ Ions.
pdb|1ZP9|D Chain D, Crystal Structure Of Full-Legnth A.Fulgidus Rio1 Serine
Kinase Bound To Atp And Mn2+ Ions.
pdb|1ZTF|A Chain A, Crystal Structure Of A.Fulgidus Rio1 Serine Protein Kinase
pdb|1ZTH|A Chain A, Crystal Structure Of A.Fulgidus Rio1 Serine Protein Kinase
Bound To Adp And Manganese Ion
pdb|1ZTH|B Chain B, Crystal Structure Of A.Fulgidus Rio1 Serine Protein Kinase
Bound To Adp And Manganese Ion
pdb|1ZTH|C Chain C, Crystal Structure Of A.Fulgidus Rio1 Serine Protein Kinase
Bound To Adp And Manganese Ion
pdb|1ZTH|D Chain D, Crystal Structure Of A.Fulgidus Rio1 Serine Protein Kinase
Bound To Adp And Manganese Ion
Length = 258
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 95/208 (45%), Gaps = 28/208 (13%)
Query: 86 LVNRGVFTAVGRQLGVGKESDIFEVAREDGT------VLAMKLHRLGRTSFRAVKSKRDY 139
L +G TA G + GKE+++F DG A+K++R+ + F +Y
Sbjct: 42 LSAKGYITAXGGVISTGKEANVFYA---DGVFDGKPVAXAVKIYRIETSEF---DKXDEY 95
Query: 140 LRHRNSYNWLYLSR-----LAALKEFAFMKALEDHGFPVPNAVDCNRHCVIMSLV----- 189
L ++ +S + KEF ++ ++ G VP ++ ++ +
Sbjct: 96 LYGDERFDXRRISPKEKVFIWTEKEFRNLERAKEAGVSVPQPYTYXKNVLLXEFIGEDEL 155
Query: 190 QGYPLVQVN-QLQNPD--SVFETIIGLVVRL-AEHGLIHCDFNEFNIMIDDDEKVTMIDF 245
LV++ +L+ D +F ++ V RL E L+H D +E+NI D KV ID
Sbjct: 156 PAPTLVELGRELKELDVEGIFNDVVENVKRLYQEAELVHADLSEYNIXYID--KVYFIDX 213
Query: 246 PQMVSVSHQNAQMYFDRDVECIFKFFRK 273
Q V++ H A+ Y +RDV I +FF K
Sbjct: 214 GQAVTLRHPXAESYLERDVRNIIRFFSK 241
>pdb|3CEK|A Chain A, Crystal Structure Of Human Dual Specificity Protein Kinase
(ttk)
pdb|3GFW|A Chain A, Crystal Structure Of Human Dual Specificity Protein Kinase
(Ttk) In Complex With A Pyrolo-Pyridin Ligand
Length = 313
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 36/179 (20%), Positives = 73/179 (40%), Gaps = 30/179 (16%)
Query: 76 LGYDFLAIKTLVNRGVFTAVGRQLGVGKESDIFEVAREDGTVLAMKLHRLGRTSFRAVKS 135
LG + L +++ +G ++ +Q+G G S +F+V E + A+K L + + S
Sbjct: 13 LGTENLYFQSMSVKGRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDS 72
Query: 136 KRDYLRHRNSYNWLYLSRLAALKEFAFMKALEDHGFPVPNAVDCNRHCVIMSLVQGYPLV 195
R+ E A++ L+ H + D + +V +
Sbjct: 73 YRN--------------------EIAYLNKLQQHSDKIIRLYDYEITDQYIYMVMECGNI 112
Query: 196 QVNQ-LQNPDSV--------FETIIGLVVRLAEHGLIHCDFNEFNIMIDDDEKVTMIDF 245
+N L+ S+ ++ ++ V + +HG++H D N +I D + +IDF
Sbjct: 113 DLNSWLKKKKSIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANFLIVDG-MLKLIDF 170
>pdb|3H9F|A Chain A, Crystal Structure Of Human Dual Specificity Protein Kinase
(Ttk) In Complex With A Pyrimido-Diazepin Ligand
Length = 313
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 36/179 (20%), Positives = 73/179 (40%), Gaps = 30/179 (16%)
Query: 76 LGYDFLAIKTLVNRGVFTAVGRQLGVGKESDIFEVAREDGTVLAMKLHRLGRTSFRAVKS 135
LG + L +++ +G ++ +Q+G G S +F+V E + A+K L + + S
Sbjct: 13 LGTENLYFQSMSVKGRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDS 72
Query: 136 KRDYLRHRNSYNWLYLSRLAALKEFAFMKALEDHGFPVPNAVDCNRHCVIMSLVQGYPLV 195
R+ E A++ L+ H + D + +V +
Sbjct: 73 YRN--------------------EIAYLNKLQQHSDKIIRLYDYEITDQYIYMVMECGNI 112
Query: 196 QVNQ-LQNPDSV--------FETIIGLVVRLAEHGLIHCDFNEFNIMIDDDEKVTMIDF 245
+N L+ S+ ++ ++ V + +HG++H D N +I D + +IDF
Sbjct: 113 DLNSWLKKKKSIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANFLIVDG-MLKLIDF 170
>pdb|3ORM|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain D76a Mutant
Length = 311
Score = 32.3 bits (72), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 64/161 (39%), Gaps = 26/161 (16%)
Query: 95 VGRQLGVGKESDIFEVAREDGTVLAMKLHRLGRTSFRAVKSKRD---YLR-HRNSYNWLY 150
+G LG G S++ +AR+ ++LHR RD YLR R + N
Sbjct: 16 LGEILGFGGMSEV-HLARD------LRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAA 68
Query: 151 LSRLAALKEFAFMKALEDHGFPVPNAVDCNRHCVIMSLVQGYPL---VQVNQLQNPDSVF 207
L+ A + +A +A E P+P ++M V G L V P
Sbjct: 69 LNHPAIVAVYATGEA-ETPAGPLP--------YIVMEYVDGVTLRDIVHTEGPMTPKRAI 119
Query: 208 ETIIGLVVRLA---EHGLIHCDFNEFNIMIDDDEKVTMIDF 245
E I L ++G+IH D NIMI V ++DF
Sbjct: 120 EVIADACQALNFSHQNGIIHRDVKPANIMISATNAVKVMDF 160
>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein
Kinase C Beta Ii
Length = 674
Score = 32.0 bits (71), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 8/68 (11%)
Query: 185 IMSLVQG----YPLVQVNQLQNPDSVF---ETIIGLVVRLAEHGLIHCDFNEFNIMIDDD 237
+M V G Y + QV + + P +VF E IGL L G+I+ D N+M+D +
Sbjct: 420 VMEYVNGGDLMYHIQQVGRFKEPHAVFYAAEIAIGLFF-LQSKGIIYRDLKLDNVMLDSE 478
Query: 238 EKVTMIDF 245
+ + DF
Sbjct: 479 GHIKIADF 486
>pdb|4AZS|A Chain A, High Resolution (2.2 A) Crystal Structure Of Wbdd.
pdb|4AZT|A Chain A, Co-Crystal Structure Of Wbdd And Kinase Inhibitor
Ly294002.
pdb|4AZV|A Chain A, Co-crystal Structure Of Wbdd And Kinase Inhibitor
Gw435821x
Length = 569
Score = 31.6 bits (70), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Query: 208 ETIIGLVVR----LAEHGLIHCDFNEFNIMIDDDEKVTMIDFPQMVSVSHQNAQMYFDRD 263
E I+G ++R L + G H D +N+M+D + +IDF +V+ + +
Sbjct: 342 EKILGSLLRSLAALEKQGFWHDDVRPWNVMVDARQHARLIDFGSIVTTPQDCS--WPTNL 399
Query: 264 VECIFKFFRKRFHLN 278
V+ F F + F N
Sbjct: 400 VQSFFVFVNELFAEN 414
>pdb|4AX8|A Chain A, Medium Resolution Structure Of The Bifunctional Kinase-
Methyltransferase Wbdd
Length = 569
Score = 31.6 bits (70), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Query: 208 ETIIGLVVR----LAEHGLIHCDFNEFNIMIDDDEKVTMIDFPQMVSVSHQNAQMYFDRD 263
E I+G ++R L + G H D +N+M+D + +IDF +V+ + +
Sbjct: 342 EKILGSLLRSLAALEKQGFWHDDVRPWNVMVDARQHARLIDFGSIVTTPQDCS--WPTNL 399
Query: 264 VECIFKFFRKRFHLN 278
V+ F F + F N
Sbjct: 400 VQSFFVFVNELFAEN 414
>pdb|2I0E|A Chain A, Structure Of Catalytic Domain Of Human Protein Kinase C
Beta Ii Complexed With A Bisindolylmaleimide Inhibitor
pdb|2I0E|B Chain B, Structure Of Catalytic Domain Of Human Protein Kinase C
Beta Ii Complexed With A Bisindolylmaleimide Inhibitor
Length = 353
Score = 31.6 bits (70), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 8/73 (10%)
Query: 180 NRHCVIMSLVQG----YPLVQVNQLQNPDSVF---ETIIGLVVRLAEHGLIHCDFNEFNI 232
+R +M V G Y + QV + + P +VF E IGL L G+I+ D N+
Sbjct: 94 DRLYFVMEYVNGGDLMYHIQQVGRFKEPHAVFYAAEIAIGLFF-LQSKGIIYRDLKLDNV 152
Query: 233 MIDDDEKVTMIDF 245
M+D + + + DF
Sbjct: 153 MLDSEGHIKIADF 165
>pdb|3IW4|A Chain A, Crystal Structure Of Pkc Alpha In Complex With Nvp-Aeb071
pdb|3IW4|B Chain B, Crystal Structure Of Pkc Alpha In Complex With Nvp-Aeb071
pdb|3IW4|C Chain C, Crystal Structure Of Pkc Alpha In Complex With Nvp-Aeb071
Length = 360
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 8/73 (10%)
Query: 180 NRHCVIMSLVQG----YPLVQVNQLQNPDSVF---ETIIGLVVRLAEHGLIHCDFNEFNI 232
+R +M V G Y + QV + + P +VF E IGL L + G+I+ D N+
Sbjct: 93 DRLYFVMEYVNGGDLMYHIQQVGKFKEPQAVFYAAEISIGLFF-LHKRGIIYRDLKLDNV 151
Query: 233 MIDDDEKVTMIDF 245
M+D + + + DF
Sbjct: 152 MLDSEGHIKIADF 164
>pdb|3T8O|A Chain A, Rhodopsin Kinase (grk1) L166k Mutant At 2.5a Resolution
Length = 543
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 10/72 (13%)
Query: 183 CVIMSLVQG----YPLVQVNQ----LQNPDSVFET--IIGLVVRLAEHGLIHCDFNEFNI 232
C++M+++ G Y + V++ Q P ++F T I+ + L + +I+ D N+
Sbjct: 261 CLVMTIMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEHLHQRNIIYRDLKPENV 320
Query: 233 MIDDDEKVTMID 244
++DDD V + D
Sbjct: 321 LLDDDGNVRISD 332
>pdb|3C4X|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 1
Bound To Atp And Magnesium Chloride At 2.9a
pdb|3C4X|B Chain B, Crystal Structure Of G Protein Coupled Receptor Kinase 1
Bound To Atp And Magnesium Chloride At 2.9a
pdb|3C4Y|A Chain A, Crystal Structure Of Apo Form Of G Protein Coupled
Receptor Kinase 1 At 7.51a
pdb|3C4Y|B Chain B, Crystal Structure Of Apo Form Of G Protein Coupled
Receptor Kinase 1 At 7.51a
pdb|3C4Z|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 1
Bound To Adp And Magnesium Chloride At 1.84a
pdb|3C50|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 1
Bound To Adp And Magnesium Chloride At 2.6a
pdb|3C50|B Chain B, Crystal Structure Of G Protein Coupled Receptor Kinase 1
Bound To Adp And Magnesium Chloride At 2.6a
pdb|3C51|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 1
Bound To Adp And Magnesium Chloride At 3.55a
pdb|3C51|B Chain B, Crystal Structure Of G Protein Coupled Receptor Kinase 1
Bound To Adp And Magnesium Chloride At 3.55a
Length = 543
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 10/72 (13%)
Query: 183 CVIMSLVQG----YPLVQVNQ----LQNPDSVFET--IIGLVVRLAEHGLIHCDFNEFNI 232
C++M+++ G Y + V++ Q P ++F T I+ + L + +I+ D N+
Sbjct: 261 CLVMTIMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEHLHQRNIIYRDLKPENV 320
Query: 233 MIDDDEKVTMID 244
++DDD V + D
Sbjct: 321 LLDDDGNVRISD 332
>pdb|4AZW|A Chain A, Crystal Structure Of Monomeric Wbdd
Length = 471
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 208 ETIIGLVVR----LAEHGLIHCDFNEFNIMIDDDEKVTMIDFPQMVSVSH 253
E I+G ++R L + G H D +N+M+D + +IDF +V+
Sbjct: 342 EKILGSLLRSLAALEKKGFWHDDVRPWNVMVDARQHARLIDFGSIVTTPQ 391
>pdb|3C4W|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 1
Bound To Atp And Magnesium Chloride At 2.7a
pdb|3C4W|B Chain B, Crystal Structure Of G Protein Coupled Receptor Kinase 1
Bound To Atp And Magnesium Chloride At 2.7a
Length = 543
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 10/72 (13%)
Query: 183 CVIMSLVQG----YPLVQVNQ----LQNPDSVFET--IIGLVVRLAEHGLIHCDFNEFNI 232
C++M+++ G Y + V++ Q P ++F T I+ + L + +I+ D N+
Sbjct: 261 CLVMTIMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEHLHQRNIIYRDLKPENV 320
Query: 233 MIDDDEKVTMID 244
++DDD V + D
Sbjct: 321 LLDDDGNVRISD 332
>pdb|3QC9|A Chain A, Crystal Structure Of Cross-Linked Bovine Grk1 T8cN480C
DOUBLE MUTANT Complexed With Adp And Mg
pdb|3QC9|B Chain B, Crystal Structure Of Cross-Linked Bovine Grk1 T8cN480C
DOUBLE MUTANT Complexed With Adp And Mg
pdb|3QC9|C Chain C, Crystal Structure Of Cross-Linked Bovine Grk1 T8cN480C
DOUBLE MUTANT Complexed With Adp And Mg
pdb|3QC9|D Chain D, Crystal Structure Of Cross-Linked Bovine Grk1 T8cN480C
DOUBLE MUTANT Complexed With Adp And Mg
Length = 543
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 10/72 (13%)
Query: 183 CVIMSLVQG----YPLVQVNQ----LQNPDSVFET--IIGLVVRLAEHGLIHCDFNEFNI 232
C++M+++ G Y + V++ Q P ++F T I+ + L + +I+ D N+
Sbjct: 261 CLVMTIMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEHLHQRNIIYRDLKPENV 320
Query: 233 MIDDDEKVTMID 244
++DDD V + D
Sbjct: 321 LLDDDGNVRISD 332
>pdb|3DBQ|A Chain A, Crystal Structure Of Ttk Kinase Domain
Length = 343
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 33/166 (19%), Positives = 66/166 (39%), Gaps = 30/166 (18%)
Query: 89 RGVFTAVGRQLGVGKESDIFEVAREDGTVLAMKLHRLGRTSFRAVKSKRDYLRHRNSYNW 148
+G ++ +Q+G G S +F+V E + A+K L + + S R+
Sbjct: 7 KGRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRN---------- 56
Query: 149 LYLSRLAALKEFAFMKALEDHGFPVPNAVDCNRHCVIMSLVQGYPLVQVNQ-LQNPDSV- 206
E A++ L+ H + D + +V + +N L+ S+
Sbjct: 57 ----------EIAYLNKLQQHSDKIIRLYDYEITDQYIYMVMECGNIDLNSWLKKKKSID 106
Query: 207 -------FETIIGLVVRLAEHGLIHCDFNEFNIMIDDDEKVTMIDF 245
++ ++ V + +HG++H D N +I D + +IDF
Sbjct: 107 PWERKSYWKNMLEAVHTIHQHGIVHSDLKPANFLIVDG-MLKLIDF 151
>pdb|2W1Z|A Chain A, Rop2 From Toxoplasma Gondii: A Virulence Factor With A
Protein-Kinase Fold And No Enzymatic Activity.
pdb|2W1Z|B Chain B, Rop2 From Toxoplasma Gondii: A Virulence Factor With A
Protein-Kinase Fold And No Enzymatic Activity
Length = 368
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 210 IIGLVVRLAEHGLIHCDFNEFNIMIDDDEKVTMIDFPQMV 249
+I L L +GL+H DF NI++D V + F +V
Sbjct: 200 LIRLAASLQHYGLVHADFQVRNILLDQRGGVFLTGFEHLV 239
>pdb|4F5X|W Chain W, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
Length = 1089
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 9/57 (15%)
Query: 227 FNEFNIMIDDDEKVTMIDFPQMVSVSHQNAQMYFDRDVE---CIFKFFRKRFHLNFQ 280
F+E N M+D+ K ++D P+M+ DR +E + K + FH+ F+
Sbjct: 285 FDELNQMLDNMRKAGLVDIPKMIQ------DWLVDRSIEKFPLMAKIYSWSFHVGFR 335
>pdb|2R7Q|A Chain A, Crystal Structure Of Vp1 Apoenzyme Of Rotavirus Sa11 (C-
Terminal Hexahistidine-Tagged)
pdb|2R7R|A Chain A, Crystal Structure Of Rotavirus Sa11 Vp1RNA (UGUGACC)
Complex
pdb|2R7S|A Chain A, Crystal Structure Of Rotavirus Sa11 Vp1 RNA (UGUGCC)
Complex
pdb|2R7T|A Chain A, Crystal Structure Of Rotavirus Sa11 Vp1RNA (UGUGAACC)
Complex
pdb|2R7U|A Chain A, Crystal Structure Of Rotavirus Sa11 Vp1RNA (AAAAGCC)
Complex
pdb|2R7V|A Chain A, Crystal Structure Of Rotavirus Sa11 Vp1RNA (GGCUUU)
COMPLEX
pdb|2R7W|A Chain A, Crystal Structure Of Rotavirus Sa11 Vp1RNA (UGUGACC)MRNA
5'-Cap (M7gpppg) Complex
pdb|2R7X|A Chain A, Crystal Structure Of Rotavirus Sa11 Vp1RNA (UGUGACC)GTP
Complex
pdb|2R7X|B Chain B, Crystal Structure Of Rotavirus Sa11 Vp1RNA (UGUGACC)GTP
Complex
Length = 1095
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 9/57 (15%)
Query: 227 FNEFNIMIDDDEKVTMIDFPQMVSVSHQNAQMYFDRDVE---CIFKFFRKRFHLNFQ 280
F+E N M+D+ K ++D P+M+ DR +E + K + FH+ F+
Sbjct: 285 FDELNQMLDNMRKAGLVDIPKMIQ------DWLVDRSIEKFPLMAKIYSWSFHVGFR 335
>pdb|2R7O|A Chain A, Crystal Structure Of Vp1 Apoenzyme Of Rotavirus Sa11 (N-
Terminal Hexahistidine-Tagged)
pdb|4AU6|A Chain A, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
pdb|4AU6|B Chain B, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
pdb|4AU6|C Chain C, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
pdb|4AU6|D Chain D, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
pdb|4AU6|E Chain E, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
Length = 1095
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 9/57 (15%)
Query: 227 FNEFNIMIDDDEKVTMIDFPQMVSVSHQNAQMYFDRDVE---CIFKFFRKRFHLNFQ 280
F+E N M+D+ K ++D P+M+ DR +E + K + FH+ F+
Sbjct: 291 FDELNQMLDNMRKAGLVDIPKMIQ------DWLVDRSIEKFPLMAKIYSWSFHVGFR 341
>pdb|2ZMD|A Chain A, Crystal Structure Of Human Mps1 Catalytic Domain T686a
Mutant In Complex With Sp600125 Inhibitor
Length = 390
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 33/166 (19%), Positives = 66/166 (39%), Gaps = 30/166 (18%)
Query: 89 RGVFTAVGRQLGVGKESDIFEVAREDGTVLAMKLHRLGRTSFRAVKSKRDYLRHRNSYNW 148
+G ++ +Q+G G S +F+V E + A+K L + + S R+
Sbjct: 54 KGRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRN---------- 103
Query: 149 LYLSRLAALKEFAFMKALEDHGFPVPNAVDCNRHCVIMSLVQGYPLVQVNQ-LQNPDSV- 206
E A++ L+ H + D + +V + +N L+ S+
Sbjct: 104 ----------EIAYLNKLQQHSDKIIRLYDYEITDQYIYMVMECGNIDLNSWLKKKKSID 153
Query: 207 -------FETIIGLVVRLAEHGLIHCDFNEFNIMIDDDEKVTMIDF 245
++ ++ V + +HG++H D N +I D + +IDF
Sbjct: 154 PWERKSYWKNMLEAVHTIHQHGIVHSDLKPANFLIVDG-MLKLIDF 198
>pdb|2ZMC|A Chain A, Crystal Structure Of Human Mitotic Checkpoint Kinase Mps1
Catalytic Domain Apo Form
Length = 390
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 33/166 (19%), Positives = 66/166 (39%), Gaps = 30/166 (18%)
Query: 89 RGVFTAVGRQLGVGKESDIFEVAREDGTVLAMKLHRLGRTSFRAVKSKRDYLRHRNSYNW 148
+G ++ +Q+G G S +F+V E + A+K L + + S R+
Sbjct: 54 KGRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRN---------- 103
Query: 149 LYLSRLAALKEFAFMKALEDHGFPVPNAVDCNRHCVIMSLVQGYPLVQVNQ-LQNPDSV- 206
E A++ L+ H + D + +V + +N L+ S+
Sbjct: 104 ----------EIAYLNKLQQHSDKIIRLYDYEITDQYIYMVMECGNIDLNSWLKKKKSID 153
Query: 207 -------FETIIGLVVRLAEHGLIHCDFNEFNIMIDDDEKVTMIDF 245
++ ++ V + +HG++H D N +I D + +IDF
Sbjct: 154 PWERKSYWKNMLEAVHTIHQHGIVHSDLKPANFLIVDG-MLKLIDF 198
>pdb|2C1G|A Chain A, Structure Of Streptococcus Pneumoniae Peptidoglycan
Deacetylase (Sppgda)
Length = 431
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 21/85 (24%)
Query: 4 DVDVLRYLSKDDFRVLTAVEMGMRNHEIVPSELVHRIASLKHGGTYKVLKNLLRYKLLHH 63
DVD L + SK++ +LT ++ + N IV L+H I H T L ++ Y
Sbjct: 354 DVDSLDWKSKNEASILTEIQHQVANGSIV---LMHDI----HSPTVNALPRVIEY----- 401
Query: 64 DSSKYDGFRLTYLGYDFLAIKTLVN 88
L GY F+ I ++N
Sbjct: 402 ---------LKNQGYTFVTIPEMLN 417
>pdb|2C1I|A Chain A, Structure Of Streptococcus Pnemoniae Peptidoglycan
Deacetylase (Sppgda) D 275 N Mutant
Length = 431
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 21/85 (24%)
Query: 4 DVDVLRYLSKDDFRVLTAVEMGMRNHEIVPSELVHRIASLKHGGTYKVLKNLLRYKLLHH 63
DVD L + SK++ +LT ++ + N IV L+H I H T L ++ Y
Sbjct: 354 DVDSLDWKSKNEASILTEIQHQVANGSIV---LMHDI----HSPTVNALPRVIEY----- 401
Query: 64 DSSKYDGFRLTYLGYDFLAIKTLVN 88
L GY F+ I ++N
Sbjct: 402 ---------LKNQGYTFVTIPEMLN 417
>pdb|3UIB|A Chain A, Map Kinase Lmampk10 From Leishmania Major In Complex With
Sb203580
Length = 362
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 206 VFETIIGLVVRLAEHGLIHCDFNEFNIMIDDDEKVTMIDF 245
++ ++GL V L E G++H D + NI++ D+ +T+ DF
Sbjct: 140 MYHILLGLHV-LHEAGVVHRDLHPGNILLADNNDITICDF 178
>pdb|3PG1|A Chain A, Map Kinase Lmampk10 From Leishmania Major (1.95 Angs
Resolution)
Length = 362
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 206 VFETIIGLVVRLAEHGLIHCDFNEFNIMIDDDEKVTMIDF 245
++ ++GL V L E G++H D + NI++ D+ +T+ DF
Sbjct: 140 MYHILLGLHV-LHEAGVVHRDLHPGNILLADNNDITICDF 178
>pdb|3HMN|A Chain A, Crystal Structure Of Human Mps1 Catalytic Domain In
Complex With Atp
pdb|3HMO|A Chain A, Crystal Structure Of Human Mps1 Catalytic Domain In
Complex With The Inhibitor Staurosporine
pdb|3HMP|A Chain A, Crystal Structure Of Human Mps1 Catalytic Domain In
Complex With A Quinazolin Ligand Compound 4
Length = 342
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 33/166 (19%), Positives = 66/166 (39%), Gaps = 30/166 (18%)
Query: 89 RGVFTAVGRQLGVGKESDIFEVAREDGTVLAMKLHRLGRTSFRAVKSKRDYLRHRNSYNW 148
+G ++ +Q+G G S +F+V E + A+K L + + S R+
Sbjct: 54 KGRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRN---------- 103
Query: 149 LYLSRLAALKEFAFMKALEDHGFPVPNAVDCNRHCVIMSLVQGYPLVQVNQ-LQNPDSV- 206
E A++ L+ H + D + +V + +N L+ S+
Sbjct: 104 ----------EIAYLNKLQQHSDKIIRLYDYEITDQYIYMVMECGNIDLNSWLKKKKSID 153
Query: 207 -------FETIIGLVVRLAEHGLIHCDFNEFNIMIDDDEKVTMIDF 245
++ ++ V + +HG++H D N +I D + +IDF
Sbjct: 154 PWERKSYWKNMLEAVHTIHQHGIVHSDLKPANFLIVDG-MLKLIDF 198
>pdb|2X9E|A Chain A, Human Mps1 In Complex With Nms-P715
Length = 317
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 33/166 (19%), Positives = 66/166 (39%), Gaps = 30/166 (18%)
Query: 89 RGVFTAVGRQLGVGKESDIFEVAREDGTVLAMKLHRLGRTSFRAVKSKRDYLRHRNSYNW 148
+G ++ +Q+G G S +F+V E + A+K L + + S R+
Sbjct: 10 KGRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRN---------- 59
Query: 149 LYLSRLAALKEFAFMKALEDHGFPVPNAVDCNRHCVIMSLVQGYPLVQVNQ-LQNPDSV- 206
E A++ L+ H + D + +V + +N L+ S+
Sbjct: 60 ----------EIAYLNKLQQHSDKIIRLYDYEITDQYIYMVMECGNIDLNSWLKKKKSID 109
Query: 207 -------FETIIGLVVRLAEHGLIHCDFNEFNIMIDDDEKVTMIDF 245
++ ++ V + +HG++H D N +I D + +IDF
Sbjct: 110 PWERKSYWKNMLEAVHTIHQHGIVHSDLKPANFLIVDG-MLKLIDF 154
>pdb|2HRB|A Chain A, Crystal Structure Of Human Carbonyl Reductase 3, Complexed
With Nadp+
Length = 274
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 11/72 (15%)
Query: 81 LAIKTLVNRGVFTAVGRQLGVGKESDIF----EVAREDGTV-------LAMKLHRLGRTS 129
+A+ T NRG+ A+ R+L D+ +VAR V L+ + H+L
Sbjct: 4 VALVTGANRGIGLAIARELCRQFSGDVVLTARDVARGQAAVQQLQAEGLSPRFHQLDIDD 63
Query: 130 FRAVKSKRDYLR 141
+++++ RD+LR
Sbjct: 64 LQSIRALRDFLR 75
>pdb|3VQU|A Chain A, Crystal Structure Of Human Mps1 Catalytic Domain In
Complex With 4- [(4-Amino-5-Cyano-6-Ethoxypyridin-2-
Yl)amino]benzamide
Length = 320
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 33/166 (19%), Positives = 66/166 (39%), Gaps = 30/166 (18%)
Query: 89 RGVFTAVGRQLGVGKESDIFEVAREDGTVLAMKLHRLGRTSFRAVKSKRDYLRHRNSYNW 148
+G ++ +Q+G G S +F+V E + A+K L + + S R+
Sbjct: 6 KGRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRN---------- 55
Query: 149 LYLSRLAALKEFAFMKALEDHGFPVPNAVDCNRHCVIMSLVQGYPLVQVNQ-LQNPDSV- 206
E A++ L+ H + D + +V + +N L+ S+
Sbjct: 56 ----------EIAYLNKLQQHSDKIIRLYDYEITDQYIYMVMECGNIDLNSWLKKKKSID 105
Query: 207 -------FETIIGLVVRLAEHGLIHCDFNEFNIMIDDDEKVTMIDF 245
++ ++ V + +HG++H D N +I D + +IDF
Sbjct: 106 PWERKSYWKNMLEAVHTIHQHGIVHSDLKPANFLIVDG-MLKLIDF 150
>pdb|1ZYC|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type In Apo Form.
pdb|1ZYC|B Chain B, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type In Apo Form.
pdb|1ZYC|C Chain C, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type In Apo Form.
pdb|1ZYC|D Chain D, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type In Apo Form.
pdb|1ZYD|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type Complexed With Atp.
pdb|1ZYD|B Chain B, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type Complexed With Atp
Length = 303
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 206 VFETIIGLVVRLAEHGLIHCDFNEFNIMIDDDEKVTMIDF 245
+F I+ + + G+IH D NI ID+ V + DF
Sbjct: 121 LFRQILEALSYIHSQGIIHRDLKPMNIFIDESRNVKIGDF 160
>pdb|1ZY4|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: R794g
Hyperactivating Mutant In Apo Form.
pdb|1ZY4|B Chain B, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: R794g
Hyperactivating Mutant In Apo Form.
pdb|1ZY5|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: R794g
Hyperactivating Mutant Complexed With Amppnp.
pdb|1ZY5|B Chain B, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: R794g
Hyperactivating Mutant Complexed With Amppnp
Length = 303
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 206 VFETIIGLVVRLAEHGLIHCDFNEFNIMIDDDEKVTMIDF 245
+F I+ + + G+IH D NI ID+ V + DF
Sbjct: 121 LFRQILEALSYIHSQGIIHRDLKPMNIFIDESRNVKIGDF 160
>pdb|3ZGW|A Chain A, Crystal Structure Of Maternal Embryonic Leucine Zipper
Kinase (melk) In Complex With Amp-pnp
Length = 347
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 206 VFETIIGLVVRLAEHGLIHCDFNEFNIMIDDDEKVTMIDF 245
VF I+ V + G H D N++ D+ K+ +IDF
Sbjct: 113 VFRQIVSAVAYVHSQGYAHRDLKPENLLFDEYHKLKLIDF 152
>pdb|2JCH|A Chain A, Structural And Mechanistic Basis Of Penicillin Binding
Protein Inhibition By Lactivicins
Length = 461
Score = 28.1 bits (61), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 10/87 (11%)
Query: 109 EVAREDGTVLAMKLHRLGRTSFRAVKSKRDYLRHRNSYNWLYLSRLAALKEF---AFMKA 165
E+ DGTV+A + T A + DYL R++ + AA ++F K
Sbjct: 2 EITYSDGTVIASIDYLYFTTLAEAQERMYDYLAQRDNVS-------AATQKFYRDLAAKE 54
Query: 166 LEDHGFPVPNAVDCNRHCVIMSLVQGY 192
+E+ G+ + +D H + S V Y
Sbjct: 55 IENGGYKITTTIDQKIHSAMQSAVADY 81
>pdb|2DYL|A Chain A, Crystal Structure Of Human Mitogen-Activated Protein
Kinase Kinase 7 Activated Mutant (S287d, T291d)
Length = 318
Score = 28.1 bits (61), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 219 EHGLIHCDFNEFNIMIDDDEKVTMIDF 245
+HG+IH D NI++D+ ++ + DF
Sbjct: 143 KHGVIHRDVKPSNILLDERGQIKLCDF 169
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,785,829
Number of Sequences: 62578
Number of extensions: 401429
Number of successful extensions: 1387
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 1337
Number of HSP's gapped (non-prelim): 53
length of query: 415
length of database: 14,973,337
effective HSP length: 101
effective length of query: 314
effective length of database: 8,652,959
effective search space: 2717029126
effective search space used: 2717029126
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)