Query 014940
Match_columns 415
No_of_seqs 314 out of 1957
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 03:50:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014940.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014940hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4eby_A Chitin elicitor recepto 100.0 8.9E-38 3.1E-42 294.4 20.6 186 33-226 3-198 (212)
2 4eby_A Chitin elicitor recepto 99.9 9.7E-23 3.3E-27 191.8 9.4 138 103-251 8-158 (212)
3 2l9y_A CVNH-LYSM lectin; carbo 99.5 1.5E-15 5E-20 137.9 -1.3 96 103-201 61-156 (167)
4 2gu1_A Zinc peptidase; alpha/b 99.4 6.7E-13 2.3E-17 133.8 7.9 113 103-218 6-154 (361)
5 2djp_A Hypothetical protein SB 99.3 2.5E-12 8.7E-17 101.5 5.4 64 146-221 3-67 (77)
6 1e0g_A Membrane-bound lytic mu 99.2 2.7E-11 9.1E-16 86.5 5.2 46 171-217 3-48 (48)
7 2djp_A Hypothetical protein SB 99.1 6.2E-11 2.1E-15 93.4 4.9 62 83-156 3-64 (77)
8 2gu1_A Zinc peptidase; alpha/b 99.1 1.5E-10 5.1E-15 116.6 8.2 114 37-155 6-153 (361)
9 2l9y_A CVNH-LYSM lectin; carbo 99.1 1.9E-11 6.6E-16 110.8 0.9 94 36-138 60-156 (167)
10 1e0g_A Membrane-bound lytic mu 99.0 3.9E-10 1.3E-14 80.3 5.3 46 104-154 2-47 (48)
11 4a1k_A Putative L, D-transpept 98.3 5.2E-07 1.8E-11 81.3 4.9 47 170-216 2-48 (165)
12 4a1k_A Putative L, D-transpept 98.0 3E-06 1E-10 76.3 4.8 46 105-154 3-48 (165)
13 3slu_A M23 peptidase domain pr 97.4 0.00055 1.9E-08 69.1 10.7 115 101-218 11-162 (371)
14 3slu_A M23 peptidase domain pr 96.5 0.014 4.8E-07 58.8 11.2 115 36-155 12-161 (371)
15 2glo_A Brinker CG9653-PA; prot 57.2 5.8 0.0002 28.3 2.3 26 175-200 18-47 (59)
16 1tc3_C Protein (TC3 transposas 50.0 14 0.00047 24.0 3.2 24 176-199 19-42 (51)
17 2elh_A CG11849-PA, LD40883P; s 46.5 15 0.0005 28.4 3.2 24 176-199 36-59 (87)
18 1tc3_C Protein (TC3 transposas 43.9 19 0.00066 23.2 3.1 23 44-66 19-41 (51)
19 1jko_C HIN recombinase, DNA-in 43.9 13 0.00044 24.6 2.3 25 175-199 18-42 (52)
20 2jn6_A Protein CGL2762, transp 43.4 15 0.0005 28.6 2.8 22 178-199 23-44 (97)
21 2jrt_A Uncharacterized protein 39.7 20 0.00068 28.8 3.1 28 173-200 44-71 (95)
22 2glo_A Brinker CG9653-PA; prot 33.6 31 0.0011 24.3 3.1 24 45-68 20-47 (59)
23 2jrt_A Uncharacterized protein 31.5 35 0.0012 27.3 3.3 26 44-69 47-72 (95)
24 2x48_A CAG38821; archeal virus 30.1 44 0.0015 22.8 3.3 23 176-198 29-51 (55)
25 2lfc_A Fumarate reductase, fla 29.4 31 0.0011 29.7 2.8 27 175-201 92-122 (160)
26 2rn7_A IS629 ORFA; helix, all 27.9 20 0.00069 28.3 1.3 21 179-199 31-51 (108)
27 2x48_A CAG38821; archeal virus 27.4 48 0.0017 22.5 3.1 23 44-66 29-51 (55)
28 2elh_A CG11849-PA, LD40883P; s 26.1 46 0.0016 25.4 3.0 22 45-66 37-58 (87)
29 1pdn_C Protein (PRD paired); p 25.7 43 0.0015 26.3 2.9 24 176-199 31-54 (128)
30 2lfc_A Fumarate reductase, fla 24.3 33 0.0011 29.5 2.0 26 44-69 93-122 (160)
31 2jn6_A Protein CGL2762, transp 23.8 45 0.0015 25.7 2.6 22 46-67 23-44 (97)
32 1zug_A Phage 434 CRO protein; 23.1 1.9E+02 0.0064 19.9 5.9 52 44-136 14-65 (71)
33 1k78_A Paired box protein PAX5 22.2 53 0.0018 27.2 2.9 24 176-199 46-69 (149)
34 1neq_A DNA-binding protein NER 21.7 68 0.0023 24.0 3.1 23 44-66 20-42 (74)
35 2p7v_B Sigma-70, RNA polymeras 21.1 73 0.0025 22.7 3.1 21 45-65 24-44 (68)
No 1
>4eby_A Chitin elicitor receptor kinase 1; pathogen-associated molecular patterns, pattern recognition receptors, LYSM, lysine chitin oligomer; HET: NAG BMA; 1.65A {Arabidopsis thaliana} PDB: 4ebz_A*
Probab=100.00 E-value=8.9e-38 Score=294.39 Aligned_cols=186 Identities=23% Similarity=0.321 Sum_probs=161.4
Q ss_pred CCCC-ccEEEEeCCCCCHHHHHHHcCCCH--------HHHHHhCCCCCCCCCCCCCccCCCceEEeeccccccCCccccc
Q 014940 33 DSCS-ALLGYTLYTDLKVSEVGSLFNVDP--------VSILTANAIDISYSDVENHILPSQLFVRIPVTCACVDGIRKSV 103 (415)
Q Consensus 33 ~~C~-a~~~Ytv~~gdtL~~IA~~fgvs~--------~~L~~~N~l~~t~P~~~~~~L~~Gq~l~IP~~csc~~g~~~~~ 103 (415)
.+|+ +|+.|+|++||||+.||++|+++. ++|+++|+. +. ..+.|.+||.|+||.+|.|..+.....
T Consensus 3 ~~C~~a~~~Y~V~~GDTL~~IA~~~~vsv~~~~~~~~~~I~~~Np~-l~----~~~~l~~Gq~L~IP~~~~~~~~~~~~~ 77 (212)
T 4eby_A 3 TSCPLALASYYLENGTTLSVINQNLNSSIAPYDQINFDPILRYNSN-IK----DKDRIQMGSRVLVPFPCECQPGDFLGH 77 (212)
T ss_dssp CCCSCEEEEEECCTTCCHHHHHHHTCCSSSCCCSSCCHHHHTTCTT-CS----CTTSCCTTCEEEEEECCEEETTTEEEE
T ss_pred CCCccceEEEEeCCCCCHHHHHHHHCCCchhccccCHHHHHHhccC-CC----CcCccCCCCEEEEeccccccCCccccC
Confidence 6799 999999999999999999999998 999999943 22 235789999999999999976665667
Q ss_pred ceeEEeCCCCCHHHHH-HHHhCCCCCHHHHHhhcCCCCCCCccCCcEEEecCCCcCCCCCcCCCCceeeeEEecCCCCHH
Q 014940 104 STHYKTRPSDTLTSIA-NQVYAGLVSADQLREANDIQDPDVLDVGVNLLVPLPCTCFNGTDNSLPAVYLSYVVKDVDTLA 182 (415)
Q Consensus 104 ~~~YtV~~GDTL~~IA-~~~fggLvs~~~L~~~N~l~~~~~L~~Gq~L~IP~~c~c~~~~~~~~~~~~~tY~Vq~GDTL~ 182 (415)
...|+|++|||||.|| ++ |+|++++++|+++|+ .+++.|++||+|.||..|.|+............+|+|++|||||
T Consensus 78 ~~~Y~V~~GDTL~~IA~~~-y~~lvt~~~L~~~N~-~~~~~l~~Gq~L~IP~~~~~~~~~~~~~~~~~~~Y~V~~GDTL~ 155 (212)
T 4eby_A 78 NFSYSVRQEDTYERVAISN-YANLTTMESLQARNP-FPATNIPLSATLNVLVNCSCGDESVSKDFGLFVTYPLRPEDSLS 155 (212)
T ss_dssp EEEEECCTTCCHHHHHHTT-TTTSSCHHHHHHHCC-SCTTCCCTTCEEEEEEECCCCCTTTCSSCCCEEEEECCTTCCHH
T ss_pred ceEEEecCCCcHHHHHHHh-cCCCCCHHHHHHhcC-CCcccCCCCCEEEEcCCCcCCCcccccCCCCeEEEEECCCCcHH
Confidence 7899999999999999 57 999999999999999 46788999999999999998765444444556899999999999
Q ss_pred HHHHHhCCCHHHHHHhcCCCCCCcCCCCEEEECCCCCCCCCCCc
Q 014940 183 GIAARYRTTLTDLMNANAMGSTAVKAGDILAVPLPACATNFPRY 226 (415)
Q Consensus 183 sIA~rfgvt~~~L~~~N~l~~~~I~pGq~L~IPl~~~~ss~~~~ 226 (415)
+||+|||+++++|++||++.+..+..|+ |+||.+.+.+.+++.
T Consensus 156 ~IA~~fgvsv~~L~~~N~~~~~~~~~g~-l~IP~~~~~~~~~~~ 198 (212)
T 4eby_A 156 SIARSSGVSADILQRYNPGVNFNSGNGI-VYVPGRDPNGAFPPF 198 (212)
T ss_dssp HHHHHHTSCHHHHHHHSTTCCTTSCSSE-EEEECCCTTSCCCCC
T ss_pred HHHHHHCcCHHHHHHhcCCCccCCCCCE-EEecCCCCCCccCCc
Confidence 9999999999999999998766666665 999999988766544
No 2
>4eby_A Chitin elicitor receptor kinase 1; pathogen-associated molecular patterns, pattern recognition receptors, LYSM, lysine chitin oligomer; HET: NAG BMA; 1.65A {Arabidopsis thaliana} PDB: 4ebz_A*
Probab=99.87 E-value=9.7e-23 Score=191.85 Aligned_cols=138 Identities=27% Similarity=0.463 Sum_probs=112.5
Q ss_pred cceeEEeCCCCCHHHHHHHHhCCCCCH--------HHHHhhc-CCCCCCCccCCcEEEecCCCcCCCCCcCCCCceeeeE
Q 014940 103 VSTHYKTRPSDTLTSIANQVYAGLVSA--------DQLREAN-DIQDPDVLDVGVNLLVPLPCTCFNGTDNSLPAVYLSY 173 (415)
Q Consensus 103 ~~~~YtV~~GDTL~~IA~~~fggLvs~--------~~L~~~N-~l~~~~~L~~Gq~L~IP~~c~c~~~~~~~~~~~~~tY 173 (415)
.+..|+|++||||+.||++ |+ +++ ++|+++| .+.+++.|++||+|.||..|.|.... ......+|
T Consensus 8 a~~~Y~V~~GDTL~~IA~~-~~--vsv~~~~~~~~~~I~~~Np~l~~~~~l~~Gq~L~IP~~~~~~~~~---~~~~~~~Y 81 (212)
T 4eby_A 8 ALASYYLENGTTLSVINQN-LN--SSIAPYDQINFDPILRYNSNIKDKDRIQMGSRVLVPFPCECQPGD---FLGHNFSY 81 (212)
T ss_dssp EEEEEECCTTCCHHHHHHH-TC--CSSSCCCSSCCHHHHTTCTTCSCTTSCCTTCEEEEEECCEEETTT---EEEEEEEE
T ss_pred ceEEEEeCCCCCHHHHHHH-HC--CCchhccccCHHHHHHhccCCCCcCccCCCCEEEEeccccccCCc---cccCceEE
Confidence 4678999999999999999 99 998 9999999 77667899999999999998886321 12335789
Q ss_pred EecCCCCHHHHH-HHhC--CCHHHHHHhcCCCCCCcCCCCEEEECCCC-CCCCCCCccCCCceeeccceeEEecCceeEE
Q 014940 174 VVKDVDTLAGIA-ARYR--TTLTDLMNANAMGSTAVKAGDILAVPLPA-CATNFPRYALDHGLIVPNGSYAITASHCVQC 249 (415)
Q Consensus 174 ~Vq~GDTL~sIA-~rfg--vt~~~L~~~N~l~~~~I~pGq~L~IPl~~-~~ss~~~~s~~~~l~v~~gsY~~~AG~~v~~ 249 (415)
+|++|||||+|| ++|+ +++++|++||++..+.|++||+|.||... |... ..+.+... ..+|++..||++.-
T Consensus 82 ~V~~GDTL~~IA~~~y~~lvt~~~L~~~N~~~~~~l~~Gq~L~IP~~~~~~~~--~~~~~~~~---~~~Y~V~~GDTL~~ 156 (212)
T 4eby_A 82 SVRQEDTYERVAISNYANLTTMESLQARNPFPATNIPLSATLNVLVNCSCGDE--SVSKDFGL---FVTYPLRPEDSLSS 156 (212)
T ss_dssp ECCTTCCHHHHHHTTTTTSSCHHHHHHHCCSCTTCCCTTCEEEEEEECCCCCT--TTCSSCCC---EEEEECCTTCCHHH
T ss_pred EecCCCcHHHHHHHhcCCCCCHHHHHHhcCCCcccCCCCCEEEEcCCCcCCCc--ccccCCCC---eEEEEECCCCcHHH
Confidence 999999999999 7999 99999999999877899999999999865 3221 11111111 13699999999998
Q ss_pred ee
Q 014940 250 SC 251 (415)
Q Consensus 250 ~~ 251 (415)
++
T Consensus 157 IA 158 (212)
T 4eby_A 157 IA 158 (212)
T ss_dssp HH
T ss_pred HH
Confidence 88
No 3
>2l9y_A CVNH-LYSM lectin; carbohydrate, sugar binding protein; NMR {Magnaporthe oryzae 70-15}
Probab=99.49 E-value=1.5e-15 Score=137.90 Aligned_cols=96 Identities=17% Similarity=0.137 Sum_probs=77.4
Q ss_pred cceeEEeCCCCCHHHHHHHHhCCCCCHHHHHhhcCCCCCCCccCCcEEEecCCCcCCCCCcCCCCceeeeEEecCCCCHH
Q 014940 103 VSTHYKTRPSDTLTSIANQVYAGLVSADQLREANDIQDPDVLDVGVNLLVPLPCTCFNGTDNSLPAVYLSYVVKDVDTLA 182 (415)
Q Consensus 103 ~~~~YtV~~GDTL~~IA~~~fggLvs~~~L~~~N~l~~~~~L~~Gq~L~IP~~c~c~~~~~~~~~~~~~tY~Vq~GDTL~ 182 (415)
....|+||+|||||.||++ |+ +++.+|+++|++.+++.|++||+|+||....-..............|+|++||+|+
T Consensus 61 ~~~~y~V~~GDTL~~IA~~-~~--~~~~~l~~~N~~~~~~~i~~Gq~L~ip~~~~~~~~~~~~~~~~~~~~~v~~GdtL~ 137 (167)
T 2l9y_A 61 GTATVTVQQGDTLRDIGRR-FD--CDFHEIARRNNIQNEDLIYPGQVLQVPTKGGSGGGAGNFWDSARDVRLVDGGKVLE 137 (167)
T ss_dssp SCEEEEECTTCCHHHHHHH-TT--CCHHHHHHHHTCCGGGCCCTTEEEEESCCCCCSSSSCCGGGGEEEEEEETTTTEEE
T ss_pred CCceEEECCCCcHHHHHHH-cC--CCHHHHHHHcCCCCcccccCCCEEEEcCCCCccccccccccccceEEEeCCcCChH
Confidence 4578999999999999999 99 99999999999999899999999999976432110000011234679999999999
Q ss_pred HHHHHhCCCHHHHHHhcCC
Q 014940 183 GIAARYRTTLTDLMNANAM 201 (415)
Q Consensus 183 sIA~rfgvt~~~L~~~N~l 201 (415)
+||++||.+++..+.+|+.
T Consensus 138 aIA~r~G~~v~s~i~Ln~~ 156 (167)
T 2l9y_A 138 AELRYSGGWNRSRIYLDEH 156 (167)
T ss_dssp EEEEETTEEEEEEECGGGT
T ss_pred HHHHHcCCceEEEEEcccc
Confidence 9999999888888888853
No 4
>2gu1_A Zinc peptidase; alpha/beta, beta barrel, structural genomics, PSI, protein structure initiative; 1.90A {Vibrio cholerae}
Probab=99.36 E-value=6.7e-13 Score=133.76 Aligned_cols=113 Identities=17% Similarity=0.142 Sum_probs=87.7
Q ss_pred cceeEEeCCCCCHHHHHHHHhCCCCCHHHHHhhcCCCC----CCCccCCcEEEecCCCcCCC--------C--------C
Q 014940 103 VSTHYKTRPSDTLTSIANQVYAGLVSADQLREANDIQD----PDVLDVGVNLLVPLPCTCFN--------G--------T 162 (415)
Q Consensus 103 ~~~~YtV~~GDTL~~IA~~~fggLvs~~~L~~~N~l~~----~~~L~~Gq~L~IP~~c~c~~--------~--------~ 162 (415)
.+..|+|++||||+.|+++ |+ ++.++|+++|++.. .+.|++||+|.||....-.- . .
T Consensus 6 ~~~~~~Vk~GDTL~~Ia~r-~g--vs~~~l~~~n~~~~~~~~~~~L~~Gq~L~i~~~~~~~l~~l~~~~~~~~~~~~~~~ 82 (361)
T 2gu1_A 6 KRIHYMVKVGDTLSGIFAQ-LG--VPYSILQKILSVDLDHLQLDMIQPGEELELMMDDMGQLSRLIYHMSIVEKAIYTRE 82 (361)
T ss_dssp -CEEEECCTTCCHHHHHHH-TT--CCHHHHHHHHHHGGGTCCGGGCCTTCEEEEEECTTSCEEEEEEEEETTEEEEEEEC
T ss_pred CceEEEECCCCcHHHHHHH-cC--CCHHHHHHHHhhcccccchhcCCCCCEEEEEECCCCcceEEEEEcCccceEEEEec
Confidence 5788999999999999999 99 99999999999742 46799999999996421100 0 0
Q ss_pred cCC----------CCceeeeEEecCCCCHHHHHHHhCCCHHHHHHhcCCCC------CCcCCCCEEEECCCC
Q 014940 163 DNS----------LPAVYLSYVVKDVDTLAGIAARYRTTLTDLMNANAMGS------TAVKAGDILAVPLPA 218 (415)
Q Consensus 163 ~~~----------~~~~~~tY~Vq~GDTL~sIA~rfgvt~~~L~~~N~l~~------~~I~pGq~L~IPl~~ 218 (415)
.++ .......|.|+.|||||.||++||++.++|++||++.. ..|++||+|.|+...
T Consensus 83 ~~g~f~~~~~~~~~~~~~~~~~v~igdSL~~iA~~~Gvs~~~i~~ln~i~~~~idf~~~Lr~GD~l~V~~~~ 154 (361)
T 2gu1_A 83 NDGSFSYDFQEISGEWREILFSGEINGSFSVSARRVGLTSSQVANITQVMKDKIDFSRSLRAGDRFDILVKQ 154 (361)
T ss_dssp TTSCEEEEEEECCCEEEEEEEEEESSSCHHHHHHHTTCCHHHHHHHHHHHTTTCCTTTCCCC-CEEEEEEEE
T ss_pred CCCcceeeecccCceEEEEEEEEEECCcHHHHHHHcCCCHHHHHHHHHhhcccccccccCCCCCEEEEEEEE
Confidence 000 01123578999999999999999999999999998642 469999999998753
No 5
>2djp_A Hypothetical protein SB145; LYSM, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.28 E-value=2.5e-12 Score=101.46 Aligned_cols=64 Identities=23% Similarity=0.308 Sum_probs=55.7
Q ss_pred CCcEEEecCCCcCCCCCcCCCCceeeeEEecCCCCHHHHHHHhCCCHHHHHHhcCCC-CCCcCCCCEEEECCCCCCC
Q 014940 146 VGVNLLVPLPCTCFNGTDNSLPAVYLSYVVKDVDTLAGIAARYRTTLTDLMNANAMG-STAVKAGDILAVPLPACAT 221 (415)
Q Consensus 146 ~Gq~L~IP~~c~c~~~~~~~~~~~~~tY~Vq~GDTL~sIA~rfgvt~~~L~~~N~l~-~~~I~pGq~L~IPl~~~~s 221 (415)
.||.|.||.. ....+|+|++|||||+||++|++++++|+++|++. .+.|++||+|.||......
T Consensus 3 ~Gq~l~ip~~------------~~~~~y~V~~GDTL~~IA~~~~~~~~~l~~~N~l~~~~~l~~Gq~l~iP~~~~~~ 67 (77)
T 2djp_A 3 SGSSGCSPVR------------ERRLEHQLEPGDTLAGLALKYGVTMEQIKRANRLYTNDSIFLKKTLYIPILTEPR 67 (77)
T ss_dssp CCCCCCCCCC------------EEEEEECCCTTCCHHHHHHHHTCCHHHHHHHHTCCCSSCGGGSSCEEEEEECCSC
T ss_pred CCcEeeccCC------------CCcEEEEECCCCcHHHHHHHHCcCHHHHHHHcCCCCccccCCCCEEEECCCCCCC
Confidence 5888888854 23578999999999999999999999999999997 4799999999999877543
No 6
>1e0g_A Membrane-bound lytic murein transglycosylase D; cell WALL, hydrolase, glycosidase, lipoprotein, outer membrane, multigene family; NMR {Escherichia coli} SCOP: d.7.1.1
Probab=99.17 E-value=2.7e-11 Score=86.46 Aligned_cols=46 Identities=28% Similarity=0.486 Sum_probs=43.1
Q ss_pred eeEEecCCCCHHHHHHHhCCCHHHHHHhcCCCCCCcCCCCEEEECCC
Q 014940 171 LSYVVKDVDTLAGIAARYRTTLTDLMNANAMGSTAVKAGDILAVPLP 217 (415)
Q Consensus 171 ~tY~Vq~GDTL~sIA~rfgvt~~~L~~~N~l~~~~I~pGq~L~IPl~ 217 (415)
.+|+|++|||||+||++|+++.++|+++|+ ....|++||+|.||+.
T Consensus 3 ~~y~V~~GDtl~~Ia~~~~~~~~~l~~~N~-~~~~l~~G~~l~ip~~ 48 (48)
T 1e0g_A 3 ITYRVRKGDSLSSIAKRHGVNIKDVMRWNS-DTANLQPGDKLTLFVK 48 (48)
T ss_dssp CEEEECTTCCHHHHHHHHTCCHHHHHHHCS-CGGGCCTTEEEECCCC
T ss_pred EEEEEcCCCcHHHHHHHHCcCHHHHHHhCC-CCCcCCcCCEEEEecC
Confidence 579999999999999999999999999999 6679999999999974
No 7
>2djp_A Hypothetical protein SB145; LYSM, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.10 E-value=6.2e-11 Score=93.42 Aligned_cols=62 Identities=26% Similarity=0.352 Sum_probs=54.4
Q ss_pred CCceEEeeccccccCCcccccceeEEeCCCCCHHHHHHHHhCCCCCHHHHHhhcCCCCCCCccCCcEEEecCCC
Q 014940 83 SQLFVRIPVTCACVDGIRKSVSTHYKTRPSDTLTSIANQVYAGLVSADQLREANDIQDPDVLDVGVNLLVPLPC 156 (415)
Q Consensus 83 ~Gq~l~IP~~csc~~g~~~~~~~~YtV~~GDTL~~IA~~~fggLvs~~~L~~~N~l~~~~~L~~Gq~L~IP~~c 156 (415)
.||.+.+|.. ..+..|+|++|||||.||++ |+ +++++|+++|++.+++.|++||+|.||...
T Consensus 3 ~Gq~l~ip~~---------~~~~~y~V~~GDTL~~IA~~-~~--~~~~~l~~~N~l~~~~~l~~Gq~l~iP~~~ 64 (77)
T 2djp_A 3 SGSSGCSPVR---------ERRLEHQLEPGDTLAGLALK-YG--VTMEQIKRANRLYTNDSIFLKKTLYIPILT 64 (77)
T ss_dssp CCCCCCCCCC---------EEEEEECCCTTCCHHHHHHH-HT--CCHHHHHHHHTCCCSSCGGGSSCEEEEEEC
T ss_pred CCcEeeccCC---------CCcEEEEECCCCcHHHHHHH-HC--cCHHHHHHHcCCCCccccCCCCEEEECCCC
Confidence 5788888863 14578999999999999999 99 999999999999777899999999999753
No 8
>2gu1_A Zinc peptidase; alpha/beta, beta barrel, structural genomics, PSI, protein structure initiative; 1.90A {Vibrio cholerae}
Probab=99.08 E-value=1.5e-10 Score=116.63 Aligned_cols=114 Identities=9% Similarity=0.103 Sum_probs=86.2
Q ss_pred ccEEEEeCCCCCHHHHHHHcCCCHHHHHHhCCCCCCCCCCCCCccCCCceEEeecccccc--------------------
Q 014940 37 ALLGYTLYTDLKVSEVGSLFNVDPVSILTANAIDISYSDVENHILPSQLFVRIPVTCACV-------------------- 96 (415)
Q Consensus 37 a~~~Ytv~~gdtL~~IA~~fgvs~~~L~~~N~l~~t~P~~~~~~L~~Gq~l~IP~~csc~-------------------- 96 (415)
.+..|+|++||||+.|+++||++.++|+++|++.-. .-....|.+||.|+||..-.-.
T Consensus 6 ~~~~~~Vk~GDTL~~Ia~r~gvs~~~l~~~n~~~~~--~~~~~~L~~Gq~L~i~~~~~~~l~~l~~~~~~~~~~~~~~~~ 83 (361)
T 2gu1_A 6 KRIHYMVKVGDTLSGIFAQLGVPYSILQKILSVDLD--HLQLDMIQPGEELELMMDDMGQLSRLIYHMSIVEKAIYTREN 83 (361)
T ss_dssp -CEEEECCTTCCHHHHHHHTTCCHHHHHHHHHHGGG--TCCGGGCCTTCEEEEEECTTSCEEEEEEEEETTEEEEEEECT
T ss_pred CceEEEECCCCcHHHHHHHcCCCHHHHHHHHhhccc--ccchhcCCCCCEEEEEECCCCcceEEEEEcCccceEEEEecC
Confidence 477899999999999999999999999999997200 0013578999999999742100
Q ss_pred CCcc---------cccceeEEeCCCCCHHHHHHHHhCCCCCHHHHHhhcCCCCC-----CCccCCcEEEecCC
Q 014940 97 DGIR---------KSVSTHYKTRPSDTLTSIANQVYAGLVSADQLREANDIQDP-----DVLDVGVNLLVPLP 155 (415)
Q Consensus 97 ~g~~---------~~~~~~YtV~~GDTL~~IA~~~fggLvs~~~L~~~N~l~~~-----~~L~~Gq~L~IP~~ 155 (415)
++.+ ......|+++.|||||.||++ |+ ++.++|++||++... ..|++||+|.|+..
T Consensus 84 ~g~f~~~~~~~~~~~~~~~~~v~igdSL~~iA~~-~G--vs~~~i~~ln~i~~~~idf~~~Lr~GD~l~V~~~ 153 (361)
T 2gu1_A 84 DGSFSYDFQEISGEWREILFSGEINGSFSVSARR-VG--LTSSQVANITQVMKDKIDFSRSLRAGDRFDILVK 153 (361)
T ss_dssp TSCEEEEEEECCCEEEEEEEEEESSSCHHHHHHH-TT--CCHHHHHHHHHHHTTTCCTTTCCCC-CEEEEEEE
T ss_pred CCcceeeecccCceEEEEEEEEEECCcHHHHHHH-cC--CCHHHHHHHHHhhcccccccccCCCCCEEEEEEE
Confidence 0000 001246889999999999999 99 999999999998432 45999999999864
No 9
>2l9y_A CVNH-LYSM lectin; carbohydrate, sugar binding protein; NMR {Magnaporthe oryzae 70-15}
Probab=99.06 E-value=1.9e-11 Score=110.79 Aligned_cols=94 Identities=12% Similarity=0.089 Sum_probs=73.9
Q ss_pred CccEEEEeCCCCCHHHHHHHcCCCHHHHHHhCCCCCCCCCCCCCccCCCceEEeeccccccC--C-cccccceeEEeCCC
Q 014940 36 SALLGYTLYTDLKVSEVGSLFNVDPVSILTANAIDISYSDVENHILPSQLFVRIPVTCACVD--G-IRKSVSTHYKTRPS 112 (415)
Q Consensus 36 ~a~~~Ytv~~gdtL~~IA~~fgvs~~~L~~~N~l~~t~P~~~~~~L~~Gq~l~IP~~csc~~--g-~~~~~~~~YtV~~G 112 (415)
.+...|+|++||||+.||++|+++..+|+++|++. ..+.|.+||+|+||..-.-.. . ........|+|++|
T Consensus 60 ~~~~~y~V~~GDTL~~IA~~~~~~~~~l~~~N~~~------~~~~i~~Gq~L~ip~~~~~~~~~~~~~~~~~~~~~v~~G 133 (167)
T 2l9y_A 60 GGTATVTVQQGDTLRDIGRRFDCDFHEIARRNNIQ------NEDLIYPGQVLQVPTKGGSGGGAGNFWDSARDVRLVDGG 133 (167)
T ss_dssp CSCEEEEECTTCCHHHHHHHTTCCHHHHHHHHTCC------GGGCCCTTEEEEESCCCCCSSSSCCGGGGEEEEEEETTT
T ss_pred CCCceEEECCCCcHHHHHHHcCCCHHHHHHHcCCC------CcccccCCCEEEEcCCCCccccccccccccceEEEeCCc
Confidence 35678999999999999999999999999999872 337889999999997422100 0 01123467999999
Q ss_pred CCHHHHHHHHhCCCCCHHHHHhhcCC
Q 014940 113 DTLTSIANQVYAGLVSADQLREANDI 138 (415)
Q Consensus 113 DTL~~IA~~~fggLvs~~~L~~~N~l 138 (415)
|||+.||++ || .+++.+..+|..
T Consensus 134 dtL~aIA~r-~G--~~v~s~i~Ln~~ 156 (167)
T 2l9y_A 134 KVLEAELRY-SG--GWNRSRIYLDEH 156 (167)
T ss_dssp TEEEEEEEE-TT--EEEEEEECGGGT
T ss_pred CChHHHHHH-cC--CceEEEEEcccc
Confidence 999999999 99 777777777764
No 10
>1e0g_A Membrane-bound lytic murein transglycosylase D; cell WALL, hydrolase, glycosidase, lipoprotein, outer membrane, multigene family; NMR {Escherichia coli} SCOP: d.7.1.1
Probab=99.00 E-value=3.9e-10 Score=80.30 Aligned_cols=46 Identities=30% Similarity=0.405 Sum_probs=42.7
Q ss_pred ceeEEeCCCCCHHHHHHHHhCCCCCHHHHHhhcCCCCCCCccCCcEEEecC
Q 014940 104 STHYKTRPSDTLTSIANQVYAGLVSADQLREANDIQDPDVLDVGVNLLVPL 154 (415)
Q Consensus 104 ~~~YtV~~GDTL~~IA~~~fggLvs~~~L~~~N~l~~~~~L~~Gq~L~IP~ 154 (415)
+..|+|++||||+.||++ |+ +++++|+++|+ +++.|.+||+|.||.
T Consensus 2 ~~~y~V~~GDtl~~Ia~~-~~--~~~~~l~~~N~--~~~~l~~G~~l~ip~ 47 (48)
T 1e0g_A 2 SITYRVRKGDSLSSIAKR-HG--VNIKDVMRWNS--DTANLQPGDKLTLFV 47 (48)
T ss_dssp CCEEEECTTCCHHHHHHH-HT--CCHHHHHHHCS--CGGGCCTTEEEECCC
T ss_pred CEEEEEcCCCcHHHHHHH-HC--cCHHHHHHhCC--CCCcCCcCCEEEEec
Confidence 357999999999999999 99 99999999999 667899999999996
No 11
>4a1k_A Putative L, D-transpeptidase YKUD; transferase, peptidoglycan synthesis; HET: CME; 1.75A {Bacillus subtilis} PDB: 4a1j_A 4a1i_A* 1y7m_A 3zqd_A 4a52_A*
Probab=98.28 E-value=5.2e-07 Score=81.31 Aligned_cols=47 Identities=36% Similarity=0.526 Sum_probs=43.0
Q ss_pred eeeEEecCCCCHHHHHHHhCCCHHHHHHhcCCCCCCcCCCCEEEECC
Q 014940 170 YLSYVVKDVDTLAGIAARYRTTLTDLMNANAMGSTAVKAGDILAVPL 216 (415)
Q Consensus 170 ~~tY~Vq~GDTL~sIA~rfgvt~~~L~~~N~l~~~~I~pGq~L~IPl 216 (415)
..+|+||+||||++||+||++...+|+++|+..+..|.+|+.|.||.
T Consensus 2 ~~~y~V~~GdtL~~IA~~f~~g~~~l~~aNp~vd~~l~~g~~i~ip~ 48 (165)
T 4a1k_A 2 MLTYQVKQGDTLNSIAADFRISTAALLQANPSLQAGLTAGQSIVIPG 48 (165)
T ss_dssp CEEEECCTTCCHHHHHHHTTCCHHHHHHHCGGGGGCCCTTCEEEETT
T ss_pred CEEEEECCCCCHHHHHHHhCCCHHHHHHhCccCCCccCCCccccCcc
Confidence 36899999999999999999999999999986566789999999994
No 12
>4a1k_A Putative L, D-transpeptidase YKUD; transferase, peptidoglycan synthesis; HET: CME; 1.75A {Bacillus subtilis} PDB: 4a1j_A 4a1i_A* 1y7m_A 3zqd_A 4a52_A*
Probab=98.05 E-value=3e-06 Score=76.30 Aligned_cols=46 Identities=30% Similarity=0.478 Sum_probs=41.9
Q ss_pred eeEEeCCCCCHHHHHHHHhCCCCCHHHHHhhcCCCCCCCccCCcEEEecC
Q 014940 105 THYKTRPSDTLTSIANQVYAGLVSADQLREANDIQDPDVLDVGVNLLVPL 154 (415)
Q Consensus 105 ~~YtV~~GDTL~~IA~~~fggLvs~~~L~~~N~l~~~~~L~~Gq~L~IP~ 154 (415)
.+|+||+||||..||++ |+ +++.+|+++|+..++ .|.+|++|.||.
T Consensus 3 ~~y~V~~GdtL~~IA~~-f~--~g~~~l~~aNp~vd~-~l~~g~~i~ip~ 48 (165)
T 4a1k_A 3 LTYQVKQGDTLNSIAAD-FR--ISTAALLQANPSLQA-GLTAGQSIVIPG 48 (165)
T ss_dssp EEEECCTTCCHHHHHHH-TT--CCHHHHHHHCGGGGG-CCCTTCEEEETT
T ss_pred EEEEECCCCCHHHHHHH-hC--CCHHHHHHhCccCCC-ccCCCccccCcc
Confidence 57999999999999999 99 999999999997665 478999999985
No 13
>3slu_A M23 peptidase domain protein; outer membrane, hydrolase; 2.41A {Neisseria meningitidis}
Probab=97.44 E-value=0.00055 Score=69.08 Aligned_cols=115 Identities=13% Similarity=0.098 Sum_probs=80.7
Q ss_pred cccceeEEeCCCCCHHHHHHHHhCCCCCHHHHHhhcCCC----CCCCccCCcEEEecCCCcCCCCC------cC------
Q 014940 101 KSVSTHYKTRPSDTLTSIANQVYAGLVSADQLREANDIQ----DPDVLDVGVNLLVPLPCTCFNGT------DN------ 164 (415)
Q Consensus 101 ~~~~~~YtV~~GDTL~~IA~~~fggLvs~~~L~~~N~l~----~~~~L~~Gq~L~IP~~c~c~~~~------~~------ 164 (415)
...|..|+|++||||..|-++ ++ ++..++.+++... +...|++||+|.+.+...-.-.. ..
T Consensus 11 ~~~W~~~~V~~GDTL~~IL~r-~G--ls~~di~~i~~~~~~~~~l~~LrpGq~l~i~~~~~~~l~~l~~~~~~~~~~~~v 87 (371)
T 3slu_A 11 TAYWVQEAVQPGDSLADVLAR-SG--MARDEIARITEKYGGEADLRHLRADQSVHVLVGGDGGAREVQFFTDEDGERNLV 87 (371)
T ss_dssp CCEEEEEECCTTCCHHHHHHH-TT--CCHHHHHHHHTTC------CCBCSSSEEEEEECTTSCEEEEEEEECCTTEEEEE
T ss_pred CCceEEEEECCCCcHHHHHHH-cC--CCHHHHHHHHHhccccCchhhCCCCCEEEEEECCCCCeEEEEEEecCCCceeEE
Confidence 346889999999999999999 89 9999999987653 44679999999997642100000 00
Q ss_pred ------CCCc----------eeeeEEecCCCCHHHHHHHhCCCHHHHHHhcCCC----C-CCcCCCCEEEECCCC
Q 014940 165 ------SLPA----------VYLSYVVKDVDTLAGIAARYRTTLTDLMNANAMG----S-TAVKAGDILAVPLPA 218 (415)
Q Consensus 165 ------~~~~----------~~~tY~Vq~GDTL~sIA~rfgvt~~~L~~~N~l~----~-~~I~pGq~L~IPl~~ 218 (415)
+... ....+.+.-.++|+..|++.|++.+.+++++++- + ..|++|+.+.|....
T Consensus 88 ~i~~~dg~f~~~~~~~~~~~~~~~~~g~I~~Sl~~a~~~agl~~~~~~~l~~i~~~~idf~~l~~GD~f~v~~~~ 162 (371)
T 3slu_A 88 ALEKKGGIWRRSASEADMKVLPTLRSVVVKTSARGSLARAEVPVEIRESLSGIFAGRFSLDGLKEGDAVRLIYDS 162 (371)
T ss_dssp EEEEETTEEEECCCGGGEEEEEEEEEEECSSCHHHHHHHTTCCHHHHHHHHHHHTTTCCTTCCCTTCEEEEEEEE
T ss_pred EEEecCCeeEEEeeecccceeeeEEEEEEeccHHHHHHHcCCCHHHHHHHHHHHccCcCHHHcCCCCEEEEEEEE
Confidence 0000 0001223347899999999999999888888642 1 369999999998753
No 14
>3slu_A M23 peptidase domain protein; outer membrane, hydrolase; 2.41A {Neisseria meningitidis}
Probab=96.51 E-value=0.014 Score=58.79 Aligned_cols=115 Identities=11% Similarity=0.013 Sum_probs=79.1
Q ss_pred CccEEEEeCCCCCHHHHHHHcCCCHHHHHHhCCCCCCCCCCCCCccCCCceEEeecccccc----------CCccc----
Q 014940 36 SALLGYTLYTDLKVSEVGSLFNVDPVSILTANAIDISYSDVENHILPSQLFVRIPVTCACV----------DGIRK---- 101 (415)
Q Consensus 36 ~a~~~Ytv~~gdtL~~IA~~fgvs~~~L~~~N~l~~t~P~~~~~~L~~Gq~l~IP~~csc~----------~g~~~---- 101 (415)
..+..|+|++||||..|-+++|++..++.+++...- ..-+-..|.+||.+++...-.-. ++...
T Consensus 12 ~~W~~~~V~~GDTL~~IL~r~Gls~~di~~i~~~~~--~~~~l~~LrpGq~l~i~~~~~~~l~~l~~~~~~~~~~~~v~i 89 (371)
T 3slu_A 12 AYWVQEAVQPGDSLADVLARSGMARDEIARITEKYG--GEADLRHLRADQSVHVLVGGDGGAREVQFFTDEDGERNLVAL 89 (371)
T ss_dssp CEEEEEECCTTCCHHHHHHHTTCCHHHHHHHHTTC--------CCBCSSSEEEEEECTTSCEEEEEEEECCTTEEEEEEE
T ss_pred CceEEEEECCCCcHHHHHHHcCCCHHHHHHHHHhcc--ccCchhhCCCCCEEEEEECCCCCeEEEEEEecCCCceeEEEE
Confidence 357889999999999999999999999999877520 00123668999999997642100 00000
Q ss_pred -ccceeEEe----------------CCCCCHHHHHHHHhCCCCCHHHHHhhcCC----CCCCCccCCcEEEecCC
Q 014940 102 -SVSTHYKT----------------RPSDTLTSIANQVYAGLVSADQLREANDI----QDPDVLDVGVNLLVPLP 155 (415)
Q Consensus 102 -~~~~~YtV----------------~~GDTL~~IA~~~fggLvs~~~L~~~N~l----~~~~~L~~Gq~L~IP~~ 155 (415)
.....|++ .-.++|+..+++ .+ ++...+++++.+ .|...|++|+++.|...
T Consensus 90 ~~~dg~f~~~~~~~~~~~~~~~~~g~I~~Sl~~a~~~-ag--l~~~~~~~l~~i~~~~idf~~l~~GD~f~v~~~ 161 (371)
T 3slu_A 90 EKKGGIWRRSASEADMKVLPTLRSVVVKTSARGSLAR-AE--VPVEIRESLSGIFAGRFSLDGLKEGDAVRLIYD 161 (371)
T ss_dssp EEETTEEEECCCGGGEEEEEEEEEEECSSCHHHHHHH-TT--CCHHHHHHHHHHHTTTCCTTCCCTTCEEEEEEE
T ss_pred EecCCeeEEEeeecccceeeeEEEEEEeccHHHHHHH-cC--CCHHHHHHHHHHHccCcCHHHcCCCCEEEEEEE
Confidence 00012222 237899999999 78 899888888876 24446999999999764
No 15
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=57.15 E-value=5.8 Score=28.35 Aligned_cols=26 Identities=8% Similarity=0.089 Sum_probs=22.1
Q ss_pred ecCCCC----HHHHHHHhCCCHHHHHHhcC
Q 014940 175 VKDVDT----LAGIAARYRTTLTDLMNANA 200 (415)
Q Consensus 175 Vq~GDT----L~sIA~rfgvt~~~L~~~N~ 200 (415)
++.|.+ +..||++||++...|..|=.
T Consensus 18 ~~~g~s~~~~~~~vA~~~gIs~~tl~~W~~ 47 (59)
T 2glo_A 18 YRNDNDCKGNQRATARKYNIHRRQIQKWLQ 47 (59)
T ss_dssp HHHCTTTTTCHHHHHHHTTSCHHHHHHHHT
T ss_pred HHcCCCcchHHHHHHHHHCcCHHHHHHHHH
Confidence 356778 99999999999999999843
No 16
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=50.00 E-value=14 Score=24.02 Aligned_cols=24 Identities=4% Similarity=-0.180 Sum_probs=21.4
Q ss_pred cCCCCHHHHHHHhCCCHHHHHHhc
Q 014940 176 KDVDTLAGIAARYRTTLTDLMNAN 199 (415)
Q Consensus 176 q~GDTL~sIA~rfgvt~~~L~~~N 199 (415)
..|-+...||+++|++...+..|=
T Consensus 19 ~~g~s~~~IA~~lgis~~Tv~~~~ 42 (51)
T 1tc3_C 19 LLNVSLHEMSRKISRSRHCIRVYL 42 (51)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHH
Confidence 578999999999999999988774
No 17
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=46.51 E-value=15 Score=28.38 Aligned_cols=24 Identities=17% Similarity=0.084 Sum_probs=21.6
Q ss_pred cCCCCHHHHHHHhCCCHHHHHHhc
Q 014940 176 KDVDTLAGIAARYRTTLTDLMNAN 199 (415)
Q Consensus 176 q~GDTL~sIA~rfgvt~~~L~~~N 199 (415)
..|.++..||++||++...|.+|=
T Consensus 36 ~~g~s~~~iA~~~gIs~sTl~rW~ 59 (87)
T 2elh_A 36 HDGESKASVARDIGVPESTLRGWC 59 (87)
T ss_dssp HHTCCHHHHHHHHTCCHHHHHHHH
T ss_pred HCCCCHHHHHHHHCcCHHHHHHHH
Confidence 578999999999999999998883
No 18
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=43.86 E-value=19 Score=23.24 Aligned_cols=23 Identities=9% Similarity=0.073 Sum_probs=19.9
Q ss_pred CCCCCHHHHHHHcCCCHHHHHHh
Q 014940 44 YTDLKVSEVGSLFNVDPVSILTA 66 (415)
Q Consensus 44 ~~gdtL~~IA~~fgvs~~~L~~~ 66 (415)
..|.+..+||+.+|++...+..+
T Consensus 19 ~~g~s~~~IA~~lgis~~Tv~~~ 41 (51)
T 1tc3_C 19 LLNVSLHEMSRKISRSRHCIRVY 41 (51)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHH
Confidence 36889999999999999888765
No 19
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=43.86 E-value=13 Score=24.61 Aligned_cols=25 Identities=8% Similarity=0.053 Sum_probs=21.8
Q ss_pred ecCCCCHHHHHHHhCCCHHHHHHhc
Q 014940 175 VKDVDTLAGIAARYRTTLTDLMNAN 199 (415)
Q Consensus 175 Vq~GDTL~sIA~rfgvt~~~L~~~N 199 (415)
+..|.+...||+++|++...+.+|=
T Consensus 18 ~~~g~s~~~ia~~lgvs~~Tv~r~l 42 (52)
T 1jko_C 18 LEKGHPRQQLAIIFGIGVSTLYRYF 42 (52)
T ss_dssp HHTTCCHHHHHHTTSCCHHHHHHHS
T ss_pred HHcCCCHHHHHHHHCCCHHHHHHHH
Confidence 3578999999999999999998873
No 20
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=43.39 E-value=15 Score=28.64 Aligned_cols=22 Identities=23% Similarity=0.051 Sum_probs=20.5
Q ss_pred CCCHHHHHHHhCCCHHHHHHhc
Q 014940 178 VDTLAGIAARYRTTLTDLMNAN 199 (415)
Q Consensus 178 GDTL~sIA~rfgvt~~~L~~~N 199 (415)
|.++..||++||++...|.+|=
T Consensus 23 g~s~~~ia~~~gIs~~tl~rW~ 44 (97)
T 2jn6_A 23 GASLQQIANDLGINRVTLKNWI 44 (97)
T ss_dssp GSCHHHHHHHHTSCHHHHHHHH
T ss_pred CChHHHHHHHHCcCHHHHHHHH
Confidence 8899999999999999999884
No 21
>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides}
Probab=39.70 E-value=20 Score=28.77 Aligned_cols=28 Identities=14% Similarity=0.090 Sum_probs=23.8
Q ss_pred EEecCCCCHHHHHHHhCCCHHHHHHhcC
Q 014940 173 YVVKDVDTLAGIAARYRTTLTDLMNANA 200 (415)
Q Consensus 173 Y~Vq~GDTL~sIA~rfgvt~~~L~~~N~ 200 (415)
+....+.++.++|++|+++.++|..|-.
T Consensus 44 ~~~~g~~s~~e~arry~Is~s~i~~W~r 71 (95)
T 2jrt_A 44 AVIHGLITEREALDRYSLSEEEFALWRS 71 (95)
T ss_dssp HHHTTSSCHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHhCCCHHHHHHHHH
Confidence 4445667999999999999999999974
No 22
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=33.57 E-value=31 Score=24.31 Aligned_cols=24 Identities=13% Similarity=0.066 Sum_probs=20.1
Q ss_pred CCCC----HHHHHHHcCCCHHHHHHhCC
Q 014940 45 TDLK----VSEVGSLFNVDPVSILTANA 68 (415)
Q Consensus 45 ~gdt----L~~IA~~fgvs~~~L~~~N~ 68 (415)
.|.+ +.+||+.|||+...|..|=.
T Consensus 20 ~g~s~~~~~~~vA~~~gIs~~tl~~W~~ 47 (59)
T 2glo_A 20 NDNDCKGNQRATARKYNIHRRQIQKWLQ 47 (59)
T ss_dssp HCTTTTTCHHHHHHHTTSCHHHHHHHHT
T ss_pred cCCCcchHHHHHHHHHCcCHHHHHHHHH
Confidence 4566 99999999999999988743
No 23
>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides}
Probab=31.50 E-value=35 Score=27.27 Aligned_cols=26 Identities=4% Similarity=-0.091 Sum_probs=23.0
Q ss_pred CCCCCHHHHHHHcCCCHHHHHHhCCC
Q 014940 44 YTDLKVSEVGSLFNVDPVSILTANAI 69 (415)
Q Consensus 44 ~~gdtL~~IA~~fgvs~~~L~~~N~l 69 (415)
..+.++.++|++|+|+.++|..|-..
T Consensus 47 ~g~~s~~e~arry~Is~s~i~~W~r~ 72 (95)
T 2jrt_A 47 HGLITEREALDRYSLSEEEFALWRSA 72 (95)
T ss_dssp TTSSCHHHHHHHTTCCHHHHHHHHHH
T ss_pred cCCCCHHHHHHHhCCCHHHHHHHHHH
Confidence 45789999999999999999999764
No 24
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=30.05 E-value=44 Score=22.78 Aligned_cols=23 Identities=17% Similarity=-0.013 Sum_probs=20.7
Q ss_pred cCCCCHHHHHHHhCCCHHHHHHh
Q 014940 176 KDVDTLAGIAARYRTTLTDLMNA 198 (415)
Q Consensus 176 q~GDTL~sIA~rfgvt~~~L~~~ 198 (415)
..|-+...||+++|++...+..+
T Consensus 29 ~~g~s~~eIA~~lgis~~TV~~~ 51 (55)
T 2x48_A 29 KMGYTVQQIANALGVSERKVRRY 51 (55)
T ss_dssp HTTCCHHHHHHHHTSCHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHH
Confidence 57899999999999999998776
No 25
>2lfc_A Fumarate reductase, flavoprotein subunit; structural genomics, northeast structural genomics consortiu PSI-biology; NMR {Lactobacillus plantarum}
Probab=29.36 E-value=31 Score=29.72 Aligned_cols=27 Identities=15% Similarity=0.071 Sum_probs=22.2
Q ss_pred ecCCCCHHHHHHHhCCCHH----HHHHhcCC
Q 014940 175 VKDVDTLAGIAARYRTTLT----DLMNANAM 201 (415)
Q Consensus 175 Vq~GDTL~sIA~rfgvt~~----~L~~~N~l 201 (415)
+.++|||..+|++.|++.+ .+.++|..
T Consensus 92 ~~kadTleeLA~~~gid~~~L~~TV~~yN~~ 122 (160)
T 2lfc_A 92 VFVKGSLESAAEQAGIVVDELVQTVKNYQGY 122 (160)
T ss_dssp SEECSSHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred eEecCCHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 4678999999999999875 46788853
No 26
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=27.89 E-value=20 Score=28.31 Aligned_cols=21 Identities=24% Similarity=0.121 Sum_probs=19.2
Q ss_pred CCHHHHHHHhCCCHHHHHHhc
Q 014940 179 DTLAGIAARYRTTLTDLMNAN 199 (415)
Q Consensus 179 DTL~sIA~rfgvt~~~L~~~N 199 (415)
.++..||++|||+...|..|=
T Consensus 31 ~s~~~va~~~gIs~~tl~~W~ 51 (108)
T 2rn7_A 31 ATICSIAPKIGCTPETLRVWV 51 (108)
T ss_dssp HHHHHHHHHHTSCHHHHHHHH
T ss_pred ccHHHHHHHHCcCHHHHHHHH
Confidence 689999999999999999884
No 27
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=27.40 E-value=48 Score=22.55 Aligned_cols=23 Identities=9% Similarity=0.125 Sum_probs=19.7
Q ss_pred CCCCCHHHHHHHcCCCHHHHHHh
Q 014940 44 YTDLKVSEVGSLFNVDPVSILTA 66 (415)
Q Consensus 44 ~~gdtL~~IA~~fgvs~~~L~~~ 66 (415)
..|.+..+||+.+|++...+..+
T Consensus 29 ~~g~s~~eIA~~lgis~~TV~~~ 51 (55)
T 2x48_A 29 KMGYTVQQIANALGVSERKVRRY 51 (55)
T ss_dssp HTTCCHHHHHHHHTSCHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHH
Confidence 36889999999999999887764
No 28
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=26.11 E-value=46 Score=25.43 Aligned_cols=22 Identities=9% Similarity=-0.047 Sum_probs=19.7
Q ss_pred CCCCHHHHHHHcCCCHHHHHHh
Q 014940 45 TDLKVSEVGSLFNVDPVSILTA 66 (415)
Q Consensus 45 ~gdtL~~IA~~fgvs~~~L~~~ 66 (415)
.|.++.+||+.|||+...|..|
T Consensus 37 ~g~s~~~iA~~~gIs~sTl~rW 58 (87)
T 2elh_A 37 DGESKASVARDIGVPESTLRGW 58 (87)
T ss_dssp HTCCHHHHHHHHTCCHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHH
Confidence 5889999999999999888776
No 29
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=25.71 E-value=43 Score=26.31 Aligned_cols=24 Identities=13% Similarity=-0.062 Sum_probs=21.2
Q ss_pred cCCCCHHHHHHHhCCCHHHHHHhc
Q 014940 176 KDVDTLAGIAARYRTTLTDLMNAN 199 (415)
Q Consensus 176 q~GDTL~sIA~rfgvt~~~L~~~N 199 (415)
..|.++..||++||++...+.+|=
T Consensus 31 ~~g~s~~~ia~~lgis~~Tv~~w~ 54 (128)
T 1pdn_C 31 ADGIRPCVISRQLRVSHGCVSKIL 54 (128)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHH
Confidence 579999999999999998887773
No 30
>2lfc_A Fumarate reductase, flavoprotein subunit; structural genomics, northeast structural genomics consortiu PSI-biology; NMR {Lactobacillus plantarum}
Probab=24.26 E-value=33 Score=29.54 Aligned_cols=26 Identities=0% Similarity=-0.028 Sum_probs=21.2
Q ss_pred CCCCCHHHHHHHcCCCHH----HHHHhCCC
Q 014940 44 YTDLKVSEVGSLFNVDPV----SILTANAI 69 (415)
Q Consensus 44 ~~gdtL~~IA~~fgvs~~----~L~~~N~l 69 (415)
..++||.++|+++|++.+ .+.++|..
T Consensus 93 ~kadTleeLA~~~gid~~~L~~TV~~yN~~ 122 (160)
T 2lfc_A 93 FVKGSLESAAEQAGIVVDELVQTVKNYQGY 122 (160)
T ss_dssp EECSSHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred EecCCHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 467999999999999974 66777854
No 31
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=23.80 E-value=45 Score=25.68 Aligned_cols=22 Identities=5% Similarity=0.149 Sum_probs=19.8
Q ss_pred CCCHHHHHHHcCCCHHHHHHhC
Q 014940 46 DLKVSEVGSLFNVDPVSILTAN 67 (415)
Q Consensus 46 gdtL~~IA~~fgvs~~~L~~~N 67 (415)
|.++.+||+.|||+...|..|=
T Consensus 23 g~s~~~ia~~~gIs~~tl~rW~ 44 (97)
T 2jn6_A 23 GASLQQIANDLGINRVTLKNWI 44 (97)
T ss_dssp GSCHHHHHHHHTSCHHHHHHHH
T ss_pred CChHHHHHHHHCcCHHHHHHHH
Confidence 7899999999999999988773
No 32
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=23.09 E-value=1.9e+02 Score=19.91 Aligned_cols=52 Identities=17% Similarity=0.052 Sum_probs=37.4
Q ss_pred CCCCCHHHHHHHcCCCHHHHHHhCCCCCCCCCCCCCccCCCceEEeeccccccCCcccccceeEEeCCCCCHHHHHHHHh
Q 014940 44 YTDLKVSEVGSLFNVDPVSILTANAIDISYSDVENHILPSQLFVRIPVTCACVDGIRKSVSTHYKTRPSDTLTSIANQVY 123 (415)
Q Consensus 44 ~~gdtL~~IA~~fgvs~~~L~~~N~l~~t~P~~~~~~L~~Gq~l~IP~~csc~~g~~~~~~~~YtV~~GDTL~~IA~~~f 123 (415)
..|.|..++|++.|++...|.++=.... .+.+.+..|++. |
T Consensus 14 ~~glsq~~lA~~~gis~~~i~~~e~g~~--------------------------------------~~~~~l~~i~~~-l 54 (71)
T 1zug_A 14 ALKMTQTELATKAGVKQQSIQLIEAGVT--------------------------------------KRPRFLFEIAMA-L 54 (71)
T ss_dssp HTTCCHHHHHHHHTSCHHHHHHHHTTCC--------------------------------------SSCSTHHHHHHH-T
T ss_pred HcCCCHHHHHHHhCCCHHHHHHHHcCCC--------------------------------------CChHHHHHHHHH-H
Confidence 3578889999999999888887744310 012348889988 8
Q ss_pred CCCCCHHHHHhhc
Q 014940 124 AGLVSADQLREAN 136 (415)
Q Consensus 124 ggLvs~~~L~~~N 136 (415)
+ ++.++|..-.
T Consensus 55 ~--~~~~~l~~~~ 65 (71)
T 1zug_A 55 N--CDPVWLQYGT 65 (71)
T ss_dssp T--SCHHHHHHSC
T ss_pred C--CCHHHHhCCC
Confidence 9 9999887643
No 33
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=22.20 E-value=53 Score=27.20 Aligned_cols=24 Identities=8% Similarity=-0.042 Sum_probs=21.6
Q ss_pred cCCCCHHHHHHHhCCCHHHHHHhc
Q 014940 176 KDVDTLAGIAARYRTTLTDLMNAN 199 (415)
Q Consensus 176 q~GDTL~sIA~rfgvt~~~L~~~N 199 (415)
..|.+...||++||++...+.+|=
T Consensus 46 ~~G~s~~~iA~~lgis~~TV~rw~ 69 (149)
T 1k78_A 46 HQGVRPCDISRQLRVSHGCVSKIL 69 (149)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHH
Confidence 579999999999999999988773
No 34
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=21.66 E-value=68 Score=23.99 Aligned_cols=23 Identities=22% Similarity=0.382 Sum_probs=20.4
Q ss_pred CCCCCHHHHHHHcCCCHHHHHHh
Q 014940 44 YTDLKVSEVGSLFNVDPVSILTA 66 (415)
Q Consensus 44 ~~gdtL~~IA~~fgvs~~~L~~~ 66 (415)
+.|.|+.++|++.|++...|..+
T Consensus 20 ~~glT~~~LA~~~Gvs~stls~~ 42 (74)
T 1neq_A 20 KRKLSLSALSRQFGYAPTTLANA 42 (74)
T ss_dssp TTSCCHHHHHHHHSSCHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHH
Confidence 56899999999999999988865
No 35
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=21.08 E-value=73 Score=22.75 Aligned_cols=21 Identities=38% Similarity=0.521 Sum_probs=18.2
Q ss_pred CCCCHHHHHHHcCCCHHHHHH
Q 014940 45 TDLKVSEVGSLFNVDPVSILT 65 (415)
Q Consensus 45 ~gdtL~~IA~~fgvs~~~L~~ 65 (415)
.|.++.+||+.+|++...+..
T Consensus 24 ~g~s~~eIA~~lgis~~tV~~ 44 (68)
T 2p7v_B 24 TDYTLEEVGKQFDVTRERIRQ 44 (68)
T ss_dssp SCCCHHHHHHHHTCCHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHH
Confidence 689999999999999976654
Done!