Query 014942
Match_columns 415
No_of_seqs 681 out of 3925
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 01:34:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014942.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014942hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1159 Era GTPase [General fu 100.0 3E-70 6.6E-75 505.7 35.1 295 111-410 2-297 (298)
2 PRK15494 era GTPase Era; Provi 100.0 5.1E-61 1.1E-65 470.4 35.9 289 113-407 50-338 (339)
3 PRK00089 era GTPase Era; Revie 100.0 2.2E-59 4.7E-64 452.0 37.9 290 112-408 2-292 (292)
4 TIGR00436 era GTP-binding prot 100.0 5.1E-56 1.1E-60 423.4 34.4 270 116-391 1-270 (270)
5 KOG1423 Ras-like GTPase ERA [C 100.0 2.5E-50 5.3E-55 370.1 28.3 279 112-393 69-379 (379)
6 COG1160 Predicted GTPases [Gen 100.0 8.5E-32 1.8E-36 262.8 15.5 225 116-362 4-235 (444)
7 PRK12298 obgE GTPase CgtA; Rev 100.0 2.3E-27 4.9E-32 235.7 19.5 191 117-314 161-362 (390)
8 COG0486 ThdF Predicted GTPase 99.9 6.1E-26 1.3E-30 222.4 13.2 162 115-285 217-378 (454)
9 PRK03003 GTP-binding protein D 99.9 1.4E-24 3.1E-29 222.4 14.3 224 116-363 39-269 (472)
10 PF02421 FeoB_N: Ferrous iron 99.9 1.3E-24 2.9E-29 188.0 10.7 155 117-278 2-156 (156)
11 COG1160 Predicted GTPases [Gen 99.9 1.1E-22 2.3E-27 199.1 24.1 207 114-334 177-390 (444)
12 TIGR03594 GTPase_EngA ribosome 99.9 6.6E-24 1.4E-28 215.6 14.1 223 117-363 1-230 (429)
13 cd04163 Era Era subfamily. Er 99.9 2.1E-22 4.5E-27 176.0 19.5 166 114-282 2-168 (168)
14 cd01894 EngA1 EngA1 subfamily. 99.9 2.2E-22 4.7E-27 174.9 17.3 157 119-282 1-157 (157)
15 PRK09518 bifunctional cytidyla 99.9 7E-23 1.5E-27 219.3 17.2 227 115-363 275-508 (712)
16 PRK00093 GTP-binding protein D 99.9 8.5E-23 1.8E-27 207.8 15.6 223 116-363 2-231 (435)
17 cd01897 NOG NOG1 is a nucleola 99.9 5E-22 1.1E-26 175.3 17.0 163 116-282 1-167 (168)
18 PLN03071 GTP-binding nuclear p 99.9 1.2E-21 2.6E-26 181.1 19.7 193 113-319 11-214 (219)
19 cd01898 Obg Obg subfamily. Th 99.9 4.3E-22 9.3E-27 175.9 14.5 163 117-282 2-170 (170)
20 KOG0092 GTPase Rab5/YPT51 and 99.9 2.8E-22 6.2E-27 174.0 12.6 163 114-286 4-170 (200)
21 PRK03003 GTP-binding protein D 99.9 1.1E-20 2.5E-25 193.6 26.6 169 114-284 210-383 (472)
22 PRK05291 trmE tRNA modificatio 99.9 1.6E-22 3.4E-27 205.5 12.5 157 115-284 215-371 (449)
23 PRK00093 GTP-binding protein D 99.9 2.7E-20 5.9E-25 189.5 28.2 168 114-283 172-344 (435)
24 cd01895 EngA2 EngA2 subfamily. 99.9 3.5E-21 7.6E-26 169.7 18.6 165 115-281 2-173 (174)
25 TIGR03156 GTP_HflX GTP-binding 99.9 2.1E-21 4.5E-26 191.0 18.2 158 116-281 190-350 (351)
26 TIGR03594 GTPase_EngA ribosome 99.9 3E-21 6.5E-26 196.1 19.4 169 114-284 171-345 (429)
27 cd04171 SelB SelB subfamily. 99.9 4.3E-21 9.2E-26 168.1 17.6 154 117-280 2-163 (164)
28 cd04158 ARD1 ARD1 subfamily. 99.9 2.2E-21 4.8E-26 171.9 15.9 159 117-288 1-166 (169)
29 KOG1144 Translation initiation 99.9 1.8E-21 3.9E-26 196.6 16.6 225 109-371 469-748 (1064)
30 cd04112 Rab26 Rab26 subfamily. 99.9 2E-21 4.4E-26 175.7 15.3 164 117-291 2-171 (191)
31 cd04149 Arf6 Arf6 subfamily. 99.9 4E-21 8.7E-26 170.3 15.8 154 114-280 8-167 (168)
32 cd01861 Rab6 Rab6 subfamily. 99.9 5E-21 1.1E-25 167.5 15.9 155 117-282 2-161 (161)
33 cd04164 trmE TrmE (MnmE, ThdF, 99.9 9.6E-21 2.1E-25 164.4 17.4 154 117-282 3-156 (157)
34 cd04154 Arl2 Arl2 subfamily. 99.9 6.7E-21 1.5E-25 169.4 16.6 155 113-280 12-172 (173)
35 cd01864 Rab19 Rab19 subfamily. 99.9 9.4E-21 2E-25 166.9 16.9 158 115-282 3-165 (165)
36 TIGR00450 mnmE_trmE_thdF tRNA 99.9 1.6E-21 3.4E-26 197.1 13.5 159 114-283 202-360 (442)
37 cd04120 Rab12 Rab12 subfamily. 99.9 9.5E-21 2.1E-25 172.6 17.1 157 117-284 2-164 (202)
38 PRK09518 bifunctional cytidyla 99.9 8.9E-20 1.9E-24 195.5 27.3 169 114-284 449-622 (712)
39 cd04142 RRP22 RRP22 subfamily. 99.9 6.7E-21 1.4E-25 173.4 16.0 166 117-284 2-175 (198)
40 PRK12299 obgE GTPase CgtA; Rev 99.9 5.5E-21 1.2E-25 186.5 16.4 163 117-284 160-329 (335)
41 cd04136 Rap_like Rap-like subf 99.9 5.8E-21 1.3E-25 167.3 14.8 155 116-282 2-162 (163)
42 cd04138 H_N_K_Ras_like H-Ras/N 99.9 9.2E-21 2E-25 165.5 16.0 155 116-282 2-161 (162)
43 cd04160 Arfrp1 Arfrp1 subfamil 99.9 6.9E-21 1.5E-25 167.8 15.1 155 117-280 1-166 (167)
44 smart00173 RAS Ras subfamily o 99.9 5.2E-21 1.1E-25 168.0 14.3 155 117-283 2-162 (164)
45 cd01874 Cdc42 Cdc42 subfamily. 99.9 8.6E-21 1.9E-25 169.3 15.8 155 116-281 2-173 (175)
46 cd01865 Rab3 Rab3 subfamily. 99.9 6.6E-21 1.4E-25 168.0 14.9 157 116-283 2-163 (165)
47 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.9 1.1E-20 2.3E-25 164.2 15.5 166 111-285 18-187 (221)
48 smart00178 SAR Sar1p-like memb 99.9 1E-20 2.3E-25 170.1 16.2 156 113-281 15-183 (184)
49 cd04122 Rab14 Rab14 subfamily. 99.9 7.8E-21 1.7E-25 167.6 15.0 155 116-282 3-163 (166)
50 cd04175 Rap1 Rap1 subgroup. T 99.9 6.3E-21 1.4E-25 167.7 14.2 155 116-282 2-162 (164)
51 cd01867 Rab8_Rab10_Rab13_like 99.9 9.8E-21 2.1E-25 167.2 15.4 155 116-282 4-164 (167)
52 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.9 7.6E-21 1.7E-25 169.1 14.8 156 116-283 3-164 (172)
53 cd04140 ARHI_like ARHI subfami 99.9 1.1E-20 2.4E-25 166.6 15.5 153 116-281 2-163 (165)
54 cd01860 Rab5_related Rab5-rela 99.9 1.6E-20 3.4E-25 164.7 16.4 157 116-283 2-163 (163)
55 PRK04213 GTP-binding protein; 99.9 2.8E-20 6.1E-25 169.4 18.6 163 114-284 8-193 (201)
56 cd04133 Rop_like Rop subfamily 99.9 9.3E-21 2E-25 169.1 15.0 155 117-283 3-173 (176)
57 cd04145 M_R_Ras_like M-Ras/R-R 99.9 1.3E-20 2.8E-25 165.3 15.7 155 116-282 3-163 (164)
58 cd01889 SelB_euk SelB subfamil 99.9 1.6E-20 3.5E-25 169.9 16.6 157 117-284 2-187 (192)
59 cd01890 LepA LepA subfamily. 99.9 1.4E-20 3.1E-25 167.7 16.1 156 117-284 2-178 (179)
60 PLN03118 Rab family protein; P 99.9 9.2E-21 2E-25 174.2 15.1 166 114-290 13-184 (211)
61 cd00877 Ran Ran (Ras-related n 99.9 1.1E-20 2.4E-25 167.1 14.9 158 117-286 2-162 (166)
62 cd00881 GTP_translation_factor 99.9 1.7E-20 3.6E-25 168.3 16.3 157 117-284 1-188 (189)
63 cd01868 Rab11_like Rab11-like. 99.9 1.3E-20 2.7E-25 165.9 15.2 156 116-282 4-164 (165)
64 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 3.7E-20 8E-25 163.1 17.9 156 116-283 1-166 (168)
65 cd01878 HflX HflX subfamily. 99.9 2.9E-20 6.4E-25 169.8 17.6 161 115-282 41-204 (204)
66 cd01875 RhoG RhoG subfamily. 99.9 1.6E-20 3.4E-25 170.0 15.7 159 115-284 3-178 (191)
67 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.9 1.4E-20 3E-25 165.9 14.9 157 116-283 3-164 (166)
68 cd04107 Rab32_Rab38 Rab38/Rab3 99.9 2E-20 4.3E-25 170.6 16.4 158 117-284 2-169 (201)
69 cd04119 RJL RJL (RabJ-Like) su 99.9 1.5E-20 3.2E-25 165.2 15.0 154 117-282 2-166 (168)
70 PF00009 GTP_EFTU: Elongation 99.9 9.4E-21 2E-25 171.0 14.0 158 115-284 3-188 (188)
71 cd04157 Arl6 Arl6 subfamily. 99.9 1.8E-20 3.9E-25 164.1 15.4 151 117-280 1-161 (162)
72 PRK12296 obgE GTPase CgtA; Rev 99.9 1.6E-20 3.5E-25 190.0 17.2 164 116-284 160-341 (500)
73 cd04116 Rab9 Rab9 subfamily. 99.9 2.8E-20 6.1E-25 164.5 16.7 157 116-282 6-170 (170)
74 cd04144 Ras2 Ras2 subfamily. 99.9 8.1E-21 1.8E-25 171.6 13.5 155 117-283 1-163 (190)
75 cd01866 Rab2 Rab2 subfamily. 99.9 1.6E-20 3.4E-25 166.2 15.0 157 116-283 5-166 (168)
76 TIGR02729 Obg_CgtA Obg family 99.8 1.4E-20 3E-25 183.6 15.8 160 116-282 158-328 (329)
77 cd04150 Arf1_5_like Arf1-Arf5- 99.8 3.2E-20 7E-25 162.9 16.7 151 117-280 2-158 (159)
78 smart00177 ARF ARF-like small 99.8 2.8E-20 6.2E-25 165.9 16.3 156 114-282 12-173 (175)
79 cd04134 Rho3 Rho3 subfamily. 99.8 1.5E-20 3.3E-25 169.8 14.6 156 117-284 2-175 (189)
80 cd01871 Rac1_like Rac1-like su 99.8 2.3E-20 5.1E-25 166.3 15.5 155 116-281 2-173 (174)
81 cd04113 Rab4 Rab4 subfamily. 99.8 2.2E-20 4.7E-25 163.7 15.0 155 117-282 2-161 (161)
82 cd04156 ARLTS1 ARLTS1 subfamil 99.8 3.4E-20 7.4E-25 162.2 16.1 152 117-280 1-159 (160)
83 cd04176 Rap2 Rap2 subgroup. T 99.8 1.7E-20 3.8E-25 164.7 14.2 155 116-282 2-162 (163)
84 cd04121 Rab40 Rab40 subfamily. 99.8 2.9E-20 6.3E-25 167.8 15.9 157 115-283 6-167 (189)
85 cd04117 Rab15 Rab15 subfamily. 99.8 2.9E-20 6.3E-25 163.4 15.4 154 117-281 2-160 (161)
86 TIGR03598 GTPase_YsxC ribosome 99.8 4.4E-20 9.5E-25 165.3 16.8 157 111-272 14-179 (179)
87 smart00174 RHO Rho (Ras homolo 99.8 1.6E-20 3.5E-25 166.7 13.9 154 118-282 1-171 (174)
88 cd04128 Spg1 Spg1p. Spg1p (se 99.8 2.8E-20 6.1E-25 167.1 15.4 159 117-288 2-171 (182)
89 PLN00223 ADP-ribosylation fact 99.8 5.9E-20 1.3E-24 164.8 17.3 157 114-283 16-178 (181)
90 cd01881 Obg_like The Obg-like 99.8 1.2E-20 2.7E-25 167.3 12.7 159 120-281 1-175 (176)
91 KOG0084 GTPase Rab1/YPT1, smal 99.8 2.4E-20 5.2E-25 162.6 14.1 161 115-284 9-173 (205)
92 cd04132 Rho4_like Rho4-like su 99.8 4E-20 8.6E-25 166.4 16.1 157 117-284 2-168 (187)
93 cd01879 FeoB Ferrous iron tran 99.8 2.4E-20 5.2E-25 162.4 14.1 156 120-282 1-156 (158)
94 cd04125 RabA_like RabA-like su 99.8 3E-20 6.4E-25 167.5 15.1 158 117-284 2-163 (188)
95 PTZ00369 Ras-like protein; Pro 99.8 2.6E-20 5.7E-25 168.2 14.7 159 114-284 4-168 (189)
96 smart00175 RAB Rab subfamily o 99.8 4.3E-20 9.4E-25 161.8 15.5 155 117-283 2-162 (164)
97 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.8 5.4E-20 1.2E-24 165.3 16.4 161 114-283 2-170 (183)
98 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.8 4.2E-20 9E-25 165.9 15.6 156 114-281 4-178 (182)
99 cd04124 RabL2 RabL2 subfamily. 99.8 5.2E-20 1.1E-24 161.7 15.9 154 117-283 2-158 (161)
100 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.8 6.3E-20 1.4E-24 163.4 16.5 153 115-280 15-173 (174)
101 PRK05306 infB translation init 99.8 8.3E-21 1.8E-25 201.9 12.6 204 112-340 287-496 (787)
102 cd01863 Rab18 Rab18 subfamily. 99.8 7.4E-20 1.6E-24 160.2 16.4 154 117-281 2-160 (161)
103 PRK00454 engB GTP-binding prot 99.8 1.7E-19 3.6E-24 163.4 19.3 166 114-284 23-195 (196)
104 PRK11058 GTPase HflX; Provisio 99.8 5.9E-20 1.3E-24 184.7 17.8 163 116-284 198-363 (426)
105 COG0218 Predicted GTPase [Gene 99.8 2.8E-19 6.1E-24 158.1 19.8 170 110-284 19-198 (200)
106 PRK12297 obgE GTPase CgtA; Rev 99.8 4.5E-20 9.7E-25 184.6 16.7 164 117-287 160-331 (424)
107 cd04108 Rab36_Rab34 Rab34/Rab3 99.8 5.4E-20 1.2E-24 163.3 15.4 156 117-284 2-166 (170)
108 cd01893 Miro1 Miro1 subfamily. 99.8 6.2E-20 1.3E-24 162.0 15.6 156 117-283 2-164 (166)
109 cd00879 Sar1 Sar1 subfamily. 99.8 9E-20 1.9E-24 164.5 16.8 156 114-282 18-190 (190)
110 cd04131 Rnd Rnd subfamily. Th 99.8 5.3E-20 1.1E-24 164.7 15.1 154 116-281 2-174 (178)
111 CHL00189 infB translation init 99.8 2.1E-20 4.5E-25 197.2 14.4 203 113-340 242-454 (742)
112 cd04109 Rab28 Rab28 subfamily. 99.8 6.6E-20 1.4E-24 169.0 16.1 156 117-284 2-167 (215)
113 cd04126 Rab20 Rab20 subfamily. 99.8 5.5E-20 1.2E-24 169.7 15.5 154 117-283 2-190 (220)
114 cd04151 Arl1 Arl1 subfamily. 99.8 9.1E-20 2E-24 159.5 16.0 151 117-280 1-157 (158)
115 cd04101 RabL4 RabL4 (Rab-like4 99.8 1E-19 2.2E-24 159.9 16.4 155 117-282 2-163 (164)
116 cd04106 Rab23_lke Rab23-like s 99.8 8.5E-20 1.8E-24 159.9 15.6 153 117-281 2-161 (162)
117 cd04127 Rab27A Rab27a subfamil 99.8 7.7E-20 1.7E-24 163.3 15.3 157 115-282 4-176 (180)
118 cd01862 Rab7 Rab7 subfamily. 99.8 1.1E-19 2.4E-24 160.6 16.2 158 117-284 2-168 (172)
119 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.8 9.6E-20 2.1E-24 169.1 16.2 158 114-283 12-188 (232)
120 cd04147 Ras_dva Ras-dva subfam 99.8 9.5E-20 2.1E-24 165.8 15.9 163 117-291 1-171 (198)
121 PTZ00133 ADP-ribosylation fact 99.8 1.6E-19 3.4E-24 162.2 16.7 157 114-283 16-178 (182)
122 cd04135 Tc10 TC10 subfamily. 99.8 7.7E-20 1.7E-24 162.3 14.4 155 117-282 2-173 (174)
123 cd00878 Arf_Arl Arf (ADP-ribos 99.8 1.2E-19 2.7E-24 158.4 15.2 151 117-280 1-157 (158)
124 cd00157 Rho Rho (Ras homology) 99.8 8.7E-20 1.9E-24 161.2 14.3 153 117-280 2-170 (171)
125 cd04110 Rab35 Rab35 subfamily. 99.8 1.1E-19 2.3E-24 165.6 15.0 157 115-283 6-167 (199)
126 COG1084 Predicted GTPase [Gene 99.8 1.8E-19 3.8E-24 169.2 16.6 176 105-284 158-337 (346)
127 KOG0394 Ras-related GTPase [Ge 99.8 6.5E-20 1.4E-24 157.8 12.3 161 116-285 10-180 (210)
128 cd00154 Rab Rab family. Rab G 99.8 2.2E-19 4.7E-24 155.5 15.9 154 117-280 2-159 (159)
129 cd04123 Rab21 Rab21 subfamily. 99.8 2E-19 4.3E-24 157.0 15.7 155 117-282 2-161 (162)
130 cd01870 RhoA_like RhoA-like su 99.8 1.5E-19 3.2E-24 160.6 15.0 156 116-282 2-174 (175)
131 cd01892 Miro2 Miro2 subfamily. 99.8 1.1E-19 2.3E-24 161.2 14.0 158 114-283 3-166 (169)
132 TIGR02528 EutP ethanolamine ut 99.8 1.3E-19 2.8E-24 155.5 14.0 140 117-279 2-141 (142)
133 cd04143 Rhes_like Rhes_like su 99.8 2.8E-19 6E-24 168.0 16.8 155 117-283 2-171 (247)
134 TIGR00487 IF-2 translation ini 99.8 1.4E-19 3.1E-24 188.3 16.2 203 113-340 85-294 (587)
135 cd04118 Rab24 Rab24 subfamily. 99.8 2.3E-19 5E-24 162.3 15.6 155 117-283 2-166 (193)
136 PLN03110 Rab GTPase; Provision 99.8 1.6E-19 3.4E-24 166.6 14.8 157 116-283 13-174 (216)
137 smart00176 RAN Ran (Ras-relate 99.8 2.6E-19 5.5E-24 163.0 15.6 150 121-282 1-153 (200)
138 cd00876 Ras Ras family. The R 99.8 3.1E-19 6.6E-24 155.5 15.4 154 117-282 1-160 (160)
139 TIGR00231 small_GTP small GTP- 99.8 3.4E-19 7.3E-24 153.7 15.5 157 116-279 2-160 (161)
140 cd04114 Rab30 Rab30 subfamily. 99.8 3.8E-19 8.2E-24 157.0 16.0 157 115-282 7-168 (169)
141 cd04177 RSR1 RSR1 subgroup. R 99.8 2.9E-19 6.3E-24 158.0 14.9 156 116-282 2-163 (168)
142 KOG1191 Mitochondrial GTPase [ 99.8 7E-20 1.5E-24 179.4 11.8 168 114-282 267-449 (531)
143 cd04115 Rab33B_Rab33A Rab33B/R 99.8 4.4E-19 9.6E-24 157.2 16.1 159 115-283 2-169 (170)
144 PRK09602 translation-associate 99.8 4.7E-19 1E-23 176.5 17.7 190 116-318 2-301 (396)
145 cd01891 TypA_BipA TypA (tyrosi 99.8 6.1E-19 1.3E-23 159.9 16.9 157 116-283 3-192 (194)
146 cd04130 Wrch_1 Wrch-1 subfamil 99.8 2.4E-19 5.1E-24 159.4 13.7 152 117-279 2-170 (173)
147 cd00880 Era_like Era (E. coli 99.8 5.8E-19 1.3E-23 152.4 15.8 159 120-282 1-163 (163)
148 cd04139 RalA_RalB RalA/RalB su 99.8 4.4E-19 9.6E-24 155.3 15.3 153 117-282 2-161 (164)
149 cd01888 eIF2_gamma eIF2-gamma 99.8 6.4E-19 1.4E-23 161.0 16.7 160 117-286 2-202 (203)
150 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.8 5.2E-19 1.1E-23 163.3 16.1 156 116-282 2-175 (222)
151 cd04161 Arl2l1_Arl13_like Arl2 99.8 5.8E-19 1.3E-23 156.2 15.8 151 117-280 1-166 (167)
152 cd04111 Rab39 Rab39 subfamily. 99.8 3.7E-19 8.1E-24 163.5 15.0 157 116-283 3-166 (211)
153 PRK15467 ethanolamine utilizat 99.8 5E-19 1.1E-23 155.3 14.8 146 117-284 3-148 (158)
154 cd04155 Arl3 Arl3 subfamily. 99.8 9.3E-19 2E-23 155.2 16.7 154 114-280 13-172 (173)
155 TIGR01393 lepA GTP-binding pro 99.8 7E-19 1.5E-23 183.9 18.1 201 116-343 4-225 (595)
156 cd04166 CysN_ATPS CysN_ATPS su 99.8 3.8E-19 8.3E-24 163.1 14.0 157 117-291 1-195 (208)
157 cd04146 RERG_RasL11_like RERG/ 99.8 2.6E-19 5.6E-24 157.7 12.3 155 117-282 1-163 (165)
158 cd01884 EF_Tu EF-Tu subfamily. 99.8 1.6E-18 3.5E-23 157.0 17.6 145 116-271 3-171 (195)
159 cd04162 Arl9_Arfrp2_like Arl9/ 99.8 6.1E-19 1.3E-23 155.6 14.1 149 118-280 2-163 (164)
160 PF00025 Arf: ADP-ribosylation 99.8 1.6E-18 3.4E-23 154.7 16.4 156 113-281 12-174 (175)
161 PLN03108 Rab family protein; P 99.8 9E-19 2E-23 160.9 15.2 157 116-283 7-168 (210)
162 PRK12739 elongation factor G; 99.8 5.2E-19 1.1E-23 189.0 15.2 232 114-361 7-360 (691)
163 cd04159 Arl10_like Arl10-like 99.8 1.7E-18 3.7E-23 150.0 15.7 151 118-280 2-158 (159)
164 cd04148 RGK RGK subfamily. Th 99.8 7.6E-19 1.7E-23 162.6 14.3 155 117-283 2-163 (221)
165 KOG0078 GTP-binding protein SE 99.8 8.6E-19 1.9E-23 155.1 13.5 159 114-284 11-175 (207)
166 PRK12317 elongation factor 1-a 99.8 7.6E-19 1.6E-23 178.1 13.9 200 114-340 5-258 (425)
167 PRK09554 feoB ferrous iron tra 99.8 1.8E-18 3.9E-23 185.0 17.3 163 114-283 2-168 (772)
168 cd04103 Centaurin_gamma Centau 99.8 2.1E-18 4.6E-23 151.3 14.7 148 117-281 2-157 (158)
169 PRK00007 elongation factor G; 99.8 1.2E-18 2.5E-23 186.2 15.6 234 114-363 9-365 (693)
170 KOG0098 GTPase Rab2, small G p 99.8 1.1E-18 2.5E-23 150.4 12.2 157 116-282 7-167 (216)
171 PRK00741 prfC peptide chain re 99.8 1.3E-18 2.9E-23 179.2 15.1 237 114-365 9-353 (526)
172 cd04137 RheB Rheb (Ras Homolog 99.8 1.9E-18 4.1E-23 154.3 14.2 157 116-284 2-164 (180)
173 TIGR00484 EF-G translation elo 99.8 1.7E-18 3.7E-23 185.1 16.2 233 114-362 9-362 (689)
174 PRK10218 GTP-binding protein; 99.8 4.3E-18 9.2E-23 177.5 18.4 202 115-342 5-239 (607)
175 cd01873 RhoBTB RhoBTB subfamil 99.8 2.6E-18 5.6E-23 155.9 14.5 154 116-281 3-194 (195)
176 PRK05433 GTP-binding protein L 99.8 5.2E-18 1.1E-22 177.6 18.5 201 115-342 7-228 (600)
177 PTZ00132 GTP-binding nuclear p 99.8 6.6E-18 1.4E-22 155.6 17.1 166 114-291 8-176 (215)
178 TIGR00503 prfC peptide chain r 99.8 1.8E-18 3.9E-23 178.3 14.7 237 114-365 10-354 (527)
179 TIGR00491 aIF-2 translation in 99.8 3.3E-18 7.2E-23 177.8 16.5 156 113-281 2-214 (590)
180 KOG0080 GTPase Rab18, small G 99.8 1.6E-18 3.4E-23 145.8 11.3 165 114-289 10-180 (209)
181 cd04168 TetM_like Tet(M)-like 99.8 6.3E-18 1.4E-22 157.8 16.6 157 117-284 1-236 (237)
182 TIGR00475 selB selenocysteine- 99.8 4.6E-18 1E-22 177.7 17.4 157 117-284 2-167 (581)
183 cd04129 Rho2 Rho2 subfamily. 99.8 4.2E-18 9E-23 153.5 14.5 156 117-283 3-173 (187)
184 TIGR01394 TypA_BipA GTP-bindin 99.8 3.6E-18 7.8E-23 178.2 15.9 201 117-343 3-236 (594)
185 cd01896 DRG The developmentall 99.8 7.4E-18 1.6E-22 157.1 16.2 157 117-283 2-226 (233)
186 cd01876 YihA_EngB The YihA (En 99.8 2.4E-17 5.2E-22 144.3 18.6 160 118-282 2-170 (170)
187 COG0532 InfB Translation initi 99.8 5.6E-18 1.2E-22 168.8 16.1 157 113-282 3-169 (509)
188 PF00071 Ras: Ras family; Int 99.8 2.9E-18 6.3E-23 150.2 12.7 154 117-282 1-160 (162)
189 cd01886 EF-G Elongation factor 99.8 9.3E-18 2E-22 159.5 16.9 113 117-240 1-130 (270)
190 PF01926 MMR_HSR1: 50S ribosom 99.8 7.2E-18 1.6E-22 139.9 13.1 116 117-235 1-116 (116)
191 COG0370 FeoB Fe2+ transport sy 99.8 5.6E-18 1.2E-22 173.1 14.8 165 115-286 3-167 (653)
192 PRK10512 selenocysteinyl-tRNA- 99.8 1.9E-17 4.2E-22 173.6 18.9 157 117-284 2-167 (614)
193 COG2262 HflX GTPases [General 99.8 1.2E-17 2.6E-22 161.4 15.9 164 115-285 192-358 (411)
194 PRK12736 elongation factor Tu; 99.8 1.2E-17 2.5E-22 167.5 16.4 203 114-342 11-245 (394)
195 CHL00071 tufA elongation facto 99.8 1.2E-17 2.7E-22 168.2 15.9 202 114-341 11-254 (409)
196 KOG0087 GTPase Rab11/YPT3, sma 99.8 5.8E-18 1.2E-22 149.2 11.2 157 116-282 15-175 (222)
197 TIGR00437 feoB ferrous iron tr 99.8 1.1E-17 2.4E-22 174.9 15.4 155 122-283 1-155 (591)
198 cd04165 GTPBP1_like GTPBP1-lik 99.8 5E-17 1.1E-21 150.4 17.9 153 117-280 1-220 (224)
199 cd04169 RF3 RF3 subfamily. Pe 99.7 5.4E-17 1.2E-21 154.1 18.2 114 116-240 3-137 (267)
200 PRK13351 elongation factor G; 99.7 1E-17 2.2E-22 179.4 14.5 213 114-342 7-340 (687)
201 PLN03127 Elongation factor Tu; 99.7 4.4E-17 9.4E-22 165.1 17.6 201 114-340 60-294 (447)
202 KOG1489 Predicted GTP-binding 99.7 1.1E-17 2.5E-22 155.8 11.9 160 117-281 198-365 (366)
203 cd01852 AIG1 AIG1 (avrRpt2-ind 99.7 2E-17 4.3E-22 150.3 13.4 174 117-291 2-193 (196)
204 KOG1145 Mitochondrial translat 99.7 1.4E-17 3.1E-22 164.5 12.8 200 112-337 150-357 (683)
205 PRK12735 elongation factor Tu; 99.7 5.7E-17 1.2E-21 162.7 16.6 202 114-341 11-246 (396)
206 PF10662 PduV-EutP: Ethanolami 99.7 5.3E-17 1.2E-21 137.6 13.7 139 117-279 3-142 (143)
207 cd01899 Ygr210 Ygr210 subfamil 99.7 9E-17 1.9E-21 155.6 17.1 168 118-291 1-277 (318)
208 PRK00049 elongation factor Tu; 99.7 9E-17 2E-21 161.1 17.6 203 114-342 11-247 (396)
209 PRK09866 hypothetical protein; 99.7 1E-16 2.3E-21 163.2 18.0 115 163-281 230-351 (741)
210 TIGR00485 EF-Tu translation el 99.7 1.1E-16 2.3E-21 160.8 17.4 203 114-342 11-245 (394)
211 PRK04004 translation initiatio 99.7 1E-16 2.2E-21 167.3 17.8 156 112-280 3-215 (586)
212 KOG0462 Elongation factor-type 99.7 1.9E-16 4.1E-21 156.7 18.4 198 115-339 60-276 (650)
213 KOG0095 GTPase Rab30, small G 99.7 4.3E-17 9.4E-22 135.4 11.5 157 116-282 8-168 (213)
214 KOG0079 GTP-binding protein H- 99.7 3.8E-17 8.2E-22 135.6 10.5 154 117-283 10-169 (198)
215 KOG0093 GTPase Rab3, small G p 99.7 8.3E-17 1.8E-21 133.5 12.5 156 117-283 23-183 (193)
216 TIGR00483 EF-1_alpha translati 99.7 6.3E-17 1.4E-21 164.1 14.4 150 114-273 6-197 (426)
217 KOG0086 GTPase Rab4, small G p 99.7 9.4E-17 2E-21 133.9 12.5 156 116-281 10-169 (214)
218 cd00882 Ras_like_GTPase Ras-li 99.7 1.3E-16 2.8E-21 135.9 13.9 151 120-280 1-157 (157)
219 cd01883 EF1_alpha Eukaryotic e 99.7 4.4E-17 9.5E-22 150.6 11.8 146 117-272 1-194 (219)
220 KOG0073 GTP-binding ADP-ribosy 99.7 2.2E-16 4.9E-21 133.5 14.8 157 114-284 15-179 (185)
221 cd04170 EF-G_bact Elongation f 99.7 2.1E-16 4.6E-21 150.6 16.3 113 117-240 1-130 (268)
222 PRK04000 translation initiatio 99.7 2.3E-16 4.9E-21 158.8 15.9 209 114-342 8-253 (411)
223 TIGR03680 eif2g_arch translati 99.7 3.3E-16 7.1E-21 157.7 16.3 161 114-284 3-197 (406)
224 COG1163 DRG Predicted GTPase [ 99.7 9.7E-17 2.1E-21 150.2 11.2 157 116-282 64-288 (365)
225 COG0536 Obg Predicted GTPase [ 99.7 2E-16 4.4E-21 149.3 12.8 165 117-286 161-336 (369)
226 PLN03126 Elongation factor Tu; 99.7 4E-16 8.7E-21 159.0 15.9 203 114-342 80-324 (478)
227 KOG0088 GTPase Rab21, small G 99.7 2E-17 4.4E-22 138.7 5.2 157 115-284 13-176 (218)
228 PRK12740 elongation factor G; 99.7 1.4E-16 3.1E-21 170.2 13.2 223 121-359 1-340 (668)
229 TIGR02034 CysN sulfate adenyly 99.7 3.8E-16 8.2E-21 157.2 15.3 147 117-273 2-187 (406)
230 PRK05124 cysN sulfate adenylyl 99.7 4.2E-16 9.2E-21 159.3 14.5 151 114-274 26-216 (474)
231 KOG0070 GTP-binding ADP-ribosy 99.7 4.4E-16 9.5E-21 135.2 11.3 160 112-284 14-179 (181)
232 COG3596 Predicted GTPase [Gene 99.7 8.7E-16 1.9E-20 141.3 13.8 171 113-285 37-224 (296)
233 PRK05506 bifunctional sulfate 99.7 5.2E-16 1.1E-20 164.6 14.1 149 115-273 24-211 (632)
234 KOG0091 GTPase Rab39, small G 99.7 5.1E-16 1.1E-20 131.1 10.9 156 116-282 9-172 (213)
235 PTZ00141 elongation factor 1- 99.7 8.7E-16 1.9E-20 155.9 14.7 156 115-281 7-223 (446)
236 KOG0395 Ras-related GTPase [Ge 99.7 8.2E-16 1.8E-20 139.1 12.4 159 114-284 2-166 (196)
237 cd01885 EF2 EF2 (for archaea a 99.7 4E-15 8.7E-20 137.3 16.6 112 117-239 2-138 (222)
238 cd04167 Snu114p Snu114p subfam 99.6 1.4E-15 2.9E-20 140.1 12.1 157 117-284 2-212 (213)
239 KOG0075 GTP-binding ADP-ribosy 99.6 1.2E-15 2.5E-20 126.7 10.2 156 116-283 21-182 (186)
240 cd04105 SR_beta Signal recogni 99.6 5E-15 1.1E-19 135.3 15.0 114 116-240 1-123 (203)
241 cd04104 p47_IIGP_like p47 (47- 99.6 3.2E-15 6.9E-20 135.9 13.3 159 116-284 2-185 (197)
242 COG0481 LepA Membrane GTPase L 99.6 3.5E-15 7.5E-20 145.6 13.7 198 115-340 9-228 (603)
243 PRK09435 membrane ATPase/prote 99.6 6.9E-15 1.5E-19 142.7 15.1 185 114-321 55-296 (332)
244 PTZ00327 eukaryotic translatio 99.6 1E-14 2.2E-19 147.8 15.4 160 115-284 34-234 (460)
245 COG2229 Predicted GTPase [Gene 99.6 3.9E-14 8.4E-19 122.9 16.4 158 113-281 8-176 (187)
246 cd04102 RabL3 RabL3 (Rab-like3 99.6 2.2E-14 4.7E-19 130.7 15.1 140 117-268 2-175 (202)
247 PLN00043 elongation factor 1-a 99.6 1.4E-14 3.1E-19 146.9 14.0 148 115-273 7-203 (447)
248 PRK07560 elongation factor EF- 99.6 5.3E-15 1.2E-19 159.1 10.7 215 114-343 19-326 (731)
249 COG1100 GTPase SAR1 and relate 99.6 6.7E-14 1.5E-18 128.9 16.6 160 116-284 6-186 (219)
250 KOG1490 GTP-binding protein CR 99.6 4.1E-15 8.9E-20 145.9 8.1 170 105-277 158-335 (620)
251 KOG0081 GTPase Rab27, small G 99.6 3.6E-15 7.8E-20 125.3 6.4 156 117-282 11-180 (219)
252 KOG0097 GTPase Rab14, small G 99.6 3E-14 6.5E-19 117.5 11.8 155 116-282 12-172 (215)
253 KOG1424 Predicted GTP-binding 99.6 3.8E-15 8.3E-20 146.9 7.5 155 12-179 216-375 (562)
254 KOG0076 GTP-binding ADP-ribosy 99.6 9.7E-15 2.1E-19 124.9 8.9 161 116-285 18-189 (197)
255 KOG0071 GTP-binding ADP-ribosy 99.6 7.2E-14 1.6E-18 115.2 13.2 158 114-284 16-179 (180)
256 PTZ00099 rab6; Provisional 99.6 2.8E-14 6E-19 127.4 11.5 118 158-286 24-145 (176)
257 COG5256 TEF1 Translation elong 99.5 1.6E-13 3.6E-18 132.9 16.8 204 115-342 7-266 (428)
258 PF08477 Miro: Miro-like prote 99.5 1.7E-14 3.7E-19 119.8 8.5 111 117-237 1-119 (119)
259 PLN00023 GTP-binding protein; 99.5 9.4E-14 2E-18 133.2 14.4 122 111-241 17-166 (334)
260 KOG0083 GTPase Rab26/Rab37, sm 99.5 2.5E-15 5.4E-20 122.7 2.6 155 120-284 2-161 (192)
261 COG0480 FusA Translation elong 99.5 4.2E-14 9.2E-19 148.8 12.1 235 114-364 9-364 (697)
262 COG1217 TypA Predicted membran 99.5 2.4E-13 5.1E-18 132.6 15.4 196 116-338 6-235 (603)
263 cd01882 BMS1 Bms1. Bms1 is an 99.5 3.5E-13 7.5E-18 125.1 15.7 136 115-269 39-182 (225)
264 PTZ00258 GTP-binding protein; 99.5 1.8E-13 3.9E-18 135.2 14.4 90 114-206 20-126 (390)
265 PRK13768 GTPase; Provisional 99.5 3.6E-13 7.9E-18 127.0 14.9 121 164-286 98-250 (253)
266 TIGR00490 aEF-2 translation el 99.5 2.5E-14 5.5E-19 153.6 7.8 116 114-240 18-152 (720)
267 KOG0393 Ras-related small GTPa 99.5 3.8E-14 8.2E-19 126.1 7.6 161 114-285 3-181 (198)
268 cd01853 Toc34_like Toc34-like 99.5 7.4E-13 1.6E-17 124.3 14.7 128 114-241 30-164 (249)
269 COG4108 PrfC Peptide chain rel 99.5 9.3E-13 2E-17 127.8 14.2 118 114-242 11-149 (528)
270 cd01850 CDC_Septin CDC/Septin. 99.5 3.3E-12 7.1E-17 122.0 17.4 128 116-246 5-163 (276)
271 KOG3883 Ras family small GTPas 99.5 1.5E-12 3.3E-17 109.1 13.0 163 114-284 8-176 (198)
272 KOG0074 GTP-binding ADP-ribosy 99.4 4.2E-13 9.1E-18 110.9 9.5 161 113-285 15-181 (185)
273 COG4917 EutP Ethanolamine util 99.4 7.5E-13 1.6E-17 107.4 10.1 142 117-281 3-144 (148)
274 KOG0072 GTP-binding ADP-ribosy 99.4 2.5E-13 5.5E-18 112.6 7.4 158 114-284 17-180 (182)
275 KOG1707 Predicted Ras related/ 99.4 4.8E-14 1E-18 141.0 3.6 161 111-282 5-174 (625)
276 TIGR00991 3a0901s02IAP34 GTP-b 99.4 2.5E-12 5.3E-17 122.7 14.3 132 107-240 30-167 (313)
277 PRK14845 translation initiatio 99.4 1.9E-12 4.1E-17 141.3 14.8 146 126-283 472-673 (1049)
278 PRK09601 GTP-binding protein Y 99.4 4.2E-12 9.1E-17 124.2 15.7 88 116-206 3-107 (364)
279 COG5257 GCD11 Translation init 99.4 8.6E-12 1.9E-16 116.8 14.2 166 114-289 9-208 (415)
280 KOG4252 GTP-binding protein [S 99.4 1.4E-13 3E-18 118.1 1.8 159 114-283 19-181 (246)
281 COG3276 SelB Selenocysteine-sp 99.4 9E-12 2E-16 121.8 14.4 156 117-283 2-162 (447)
282 COG2895 CysN GTPases - Sulfate 99.4 5.9E-12 1.3E-16 119.3 12.1 149 115-273 6-193 (431)
283 PTZ00416 elongation factor 2; 99.4 6.3E-12 1.4E-16 136.9 13.9 115 114-239 18-157 (836)
284 PLN00116 translation elongatio 99.3 8.8E-12 1.9E-16 136.0 13.3 115 114-239 18-163 (843)
285 KOG0410 Predicted GTP binding 99.3 5.3E-12 1.1E-16 118.3 9.8 159 114-284 177-342 (410)
286 PF09439 SRPRB: Signal recogni 99.3 3.6E-12 7.9E-17 112.9 7.1 118 114-242 2-128 (181)
287 KOG0090 Signal recognition par 99.3 3.3E-11 7.2E-16 107.0 12.9 156 116-282 39-238 (238)
288 PF04548 AIG1: AIG1 family; I 99.3 9.4E-12 2E-16 114.4 9.6 167 117-286 2-189 (212)
289 PF00350 Dynamin_N: Dynamin fa 99.3 2.2E-11 4.8E-16 107.4 11.3 112 118-236 1-168 (168)
290 KOG1532 GTPase XAB1, interacts 99.3 1.1E-11 2.4E-16 113.8 8.7 125 163-289 116-270 (366)
291 KOG0077 Vesicle coat complex C 99.3 1.2E-11 2.7E-16 105.2 8.1 155 114-281 19-191 (193)
292 COG0050 TufB GTPases - transla 99.3 1E-10 2.3E-15 108.4 14.7 158 116-284 13-202 (394)
293 KOG0465 Mitochondrial elongati 99.3 1.2E-11 2.7E-16 124.2 9.2 222 114-352 38-382 (721)
294 KOG0461 Selenocysteine-specifi 99.3 7.5E-11 1.6E-15 111.3 13.8 158 116-284 8-194 (522)
295 KOG0458 Elongation factor 1 al 99.3 7.8E-11 1.7E-15 118.4 14.8 212 114-343 176-441 (603)
296 smart00053 DYNc Dynamin, GTPas 99.3 5.8E-11 1.3E-15 110.5 13.0 125 114-241 25-207 (240)
297 PF03029 ATP_bind_1: Conserved 99.3 3.7E-11 8.1E-16 112.1 11.0 115 164-281 92-235 (238)
298 TIGR02836 spore_IV_A stage IV 99.3 4.5E-11 9.7E-16 116.8 11.7 221 116-343 18-310 (492)
299 KOG0096 GTPase Ran/TC4/GSP1 (n 99.2 1.9E-11 4.1E-16 106.2 6.9 159 115-287 10-173 (216)
300 cd01900 YchF YchF subfamily. 99.2 2.4E-11 5.1E-16 115.2 8.2 86 118-206 1-103 (274)
301 PF04670 Gtr1_RagA: Gtr1/RagA 99.2 1.6E-10 3.5E-15 106.8 13.2 163 117-284 1-177 (232)
302 TIGR00073 hypB hydrogenase acc 99.2 6.4E-11 1.4E-15 108.5 10.4 151 114-282 21-206 (207)
303 TIGR00750 lao LAO/AO transport 99.2 3.4E-10 7.4E-15 109.6 15.8 153 113-283 32-238 (300)
304 cd01858 NGP_1 NGP-1. Autoanti 99.2 1.9E-11 4.1E-16 106.9 6.3 148 190-362 3-156 (157)
305 KOG1673 Ras GTPases [General f 99.2 1E-10 2.2E-15 98.4 9.3 169 112-291 17-194 (205)
306 COG0012 Predicted GTPase, prob 99.2 2.7E-10 5.8E-15 110.1 12.7 87 116-207 3-109 (372)
307 PF05049 IIGP: Interferon-indu 99.1 2.5E-10 5.5E-15 111.8 11.3 161 116-285 36-220 (376)
308 TIGR00993 3a0901s04IAP86 chlor 99.1 4.7E-10 1E-14 115.5 13.5 126 114-240 117-250 (763)
309 KOG2486 Predicted GTPase [Gene 99.1 1.5E-10 3.3E-15 106.8 8.3 171 107-282 128-315 (320)
310 PRK10463 hydrogenase nickel in 99.1 1.6E-10 3.4E-15 109.7 7.7 55 227-281 231-287 (290)
311 COG0378 HypB Ni2+-binding GTPa 99.1 1.2E-09 2.5E-14 96.5 12.2 79 198-282 120-200 (202)
312 PF03308 ArgK: ArgK protein; 99.1 6.3E-10 1.4E-14 102.9 10.6 150 113-282 27-229 (266)
313 PF00735 Septin: Septin; Inte 99.1 2E-09 4.4E-14 102.8 14.2 134 116-252 5-168 (281)
314 KOG1486 GTP-binding protein DR 99.1 6.4E-10 1.4E-14 101.0 10.0 90 116-208 63-152 (364)
315 TIGR00101 ureG urease accessor 99.1 1.4E-09 3E-14 99.0 12.3 82 196-283 113-196 (199)
316 KOG4423 GTP-binding protein-li 99.0 2.3E-11 5E-16 105.3 -1.1 156 117-283 27-194 (229)
317 cd01858 NGP_1 NGP-1. Autoanti 99.0 9.1E-10 2E-14 96.3 7.4 56 115-173 102-157 (157)
318 KOG0464 Elongation factor G [T 99.0 5.7E-10 1.2E-14 107.6 5.9 121 108-239 30-167 (753)
319 KOG1954 Endocytosis/signaling 99.0 6.4E-09 1.4E-13 99.3 12.4 133 114-248 57-233 (532)
320 cd04178 Nucleostemin_like Nucl 99.0 1.3E-09 2.8E-14 96.8 7.1 56 115-173 117-172 (172)
321 cd01859 MJ1464 MJ1464. This f 98.9 4.2E-09 9.2E-14 91.8 9.5 92 189-284 6-97 (156)
322 TIGR03596 GTPase_YlqF ribosome 98.9 1.4E-09 3E-14 104.1 6.5 156 186-363 12-173 (276)
323 KOG0468 U5 snRNP-specific prot 98.9 4E-09 8.6E-14 107.1 9.7 121 108-239 121-262 (971)
324 COG1703 ArgK Putative periplas 98.9 1.5E-08 3.2E-13 95.0 12.4 156 110-283 46-254 (323)
325 KOG1487 GTP-binding protein DR 98.9 2.4E-09 5.2E-14 97.7 6.1 156 117-282 61-280 (358)
326 cd01857 HSR1_MMR1 HSR1/MMR1. 98.9 5.2E-09 1.1E-13 89.8 6.8 55 117-174 85-139 (141)
327 KOG0467 Translation elongation 98.8 1.9E-08 4.2E-13 103.8 11.0 114 114-238 8-136 (887)
328 COG1161 Predicted GTPases [Gen 98.8 6E-09 1.3E-13 101.7 6.8 61 114-177 131-191 (322)
329 COG5258 GTPBP1 GTPase [General 98.8 2.8E-08 6.1E-13 95.5 10.7 159 114-284 116-339 (527)
330 cd01855 YqeH YqeH. YqeH is an 98.8 2E-08 4.3E-13 90.6 9.1 95 186-284 25-126 (190)
331 COG5019 CDC3 Septin family pro 98.8 1.7E-07 3.7E-12 90.3 15.3 135 115-252 23-188 (373)
332 cd01849 YlqF_related_GTPase Yl 98.8 1.2E-08 2.6E-13 89.0 6.7 57 114-173 99-155 (155)
333 KOG1547 Septin CDC10 and relat 98.8 2.7E-07 5.8E-12 83.7 14.8 134 116-252 47-210 (336)
334 cd01856 YlqF YlqF. Proteins o 98.8 4.9E-08 1.1E-12 86.6 9.8 93 185-283 9-101 (171)
335 cd01855 YqeH YqeH. YqeH is an 98.7 1.2E-08 2.5E-13 92.2 5.7 57 114-173 126-190 (190)
336 PRK09563 rbgA GTPase YlqF; Rev 98.7 1.8E-08 3.8E-13 97.0 7.2 59 114-175 120-178 (287)
337 TIGR03596 GTPase_YlqF ribosome 98.7 2.2E-08 4.8E-13 95.8 7.8 60 114-176 117-176 (276)
338 TIGR03597 GTPase_YqeH ribosome 98.7 1.4E-08 3E-13 100.8 6.4 131 116-253 155-293 (360)
339 PRK09563 rbgA GTPase YlqF; Rev 98.7 1.3E-08 2.9E-13 97.9 6.1 93 186-284 15-107 (287)
340 cd01849 YlqF_related_GTPase Yl 98.7 4.9E-08 1.1E-12 85.1 9.0 83 197-282 1-84 (155)
341 KOG1143 Predicted translation 98.7 4.1E-08 9E-13 93.9 9.0 181 115-309 167-411 (591)
342 KOG0460 Mitochondrial translat 98.7 1.7E-07 3.6E-12 89.0 13.0 159 115-284 54-246 (449)
343 cd01851 GBP Guanylate-binding 98.7 4.6E-08 1E-12 90.6 9.1 91 115-208 7-104 (224)
344 cd01856 YlqF YlqF. Proteins o 98.7 4E-08 8.7E-13 87.2 7.9 57 114-173 114-170 (171)
345 KOG2655 Septin family protein 98.7 3E-07 6.5E-12 89.3 14.1 134 116-252 22-184 (366)
346 PF07650 KH_2: KH domain syndr 98.7 1.7E-08 3.7E-13 77.5 4.3 53 344-397 26-78 (78)
347 KOG0466 Translation initiation 98.7 6.8E-08 1.5E-12 90.2 8.6 117 164-290 126-248 (466)
348 TIGR00092 GTP-binding protein 98.6 4.9E-08 1.1E-12 95.8 7.0 89 116-206 3-108 (368)
349 cd01857 HSR1_MMR1 HSR1/MMR1. 98.6 1.1E-07 2.4E-12 81.5 8.2 81 188-270 4-84 (141)
350 TIGR00157 ribosome small subun 98.5 3.2E-07 7E-12 86.2 9.1 85 191-280 32-120 (245)
351 PRK12289 GTPase RsgA; Reviewed 98.5 1.2E-07 2.6E-12 93.4 5.9 56 117-175 174-236 (352)
352 cd01859 MJ1464 MJ1464. This f 98.5 2.3E-07 4.9E-12 80.9 6.9 57 114-173 100-156 (156)
353 KOG0448 Mitofusin 1 GTPase, in 98.5 7.7E-07 1.7E-11 91.4 11.6 144 114-266 108-309 (749)
354 TIGR01425 SRP54_euk signal rec 98.5 2.3E-06 5.1E-11 85.9 14.8 120 115-241 100-254 (429)
355 PRK13796 GTPase YqeH; Provisio 98.5 1.9E-07 4.1E-12 92.8 6.6 57 115-174 160-221 (365)
356 PRK12288 GTPase RsgA; Reviewed 98.5 2.7E-07 5.9E-12 90.8 7.4 56 117-175 207-269 (347)
357 cd03112 CobW_like The function 98.5 5.4E-07 1.2E-11 78.9 8.3 117 116-238 1-158 (158)
358 KOG1491 Predicted GTP-binding 98.5 2.4E-07 5.2E-12 88.1 6.2 89 114-207 19-126 (391)
359 KOG3886 GTP-binding protein [S 98.4 4.2E-07 9E-12 82.0 6.9 123 115-241 4-131 (295)
360 PRK12289 GTPase RsgA; Reviewed 98.4 7E-07 1.5E-11 88.0 9.2 85 191-280 85-172 (352)
361 COG5192 BMS1 GTP-binding prote 98.4 2.2E-06 4.7E-11 86.1 12.5 135 114-267 68-210 (1077)
362 cd04178 Nucleostemin_like Nucl 98.4 3.6E-07 7.9E-12 81.1 5.8 56 197-254 1-58 (172)
363 TIGR00157 ribosome small subun 98.4 3.5E-07 7.6E-12 85.9 5.9 56 116-175 121-183 (245)
364 KOG0463 GTP-binding protein GP 98.4 1.6E-06 3.5E-11 83.2 9.4 163 110-284 128-358 (641)
365 PF03193 DUF258: Protein of un 98.4 3.4E-07 7.5E-12 79.7 4.1 57 116-175 36-99 (161)
366 PRK10416 signal recognition pa 98.3 1.5E-05 3.3E-10 77.6 15.4 148 115-274 114-301 (318)
367 TIGR03597 GTPase_YqeH ribosome 98.3 3E-06 6.5E-11 84.1 10.7 92 187-282 55-152 (360)
368 PRK00098 GTPase RsgA; Reviewed 98.3 2.5E-06 5.4E-11 82.6 8.8 83 193-279 78-163 (298)
369 PRK13796 GTPase YqeH; Provisio 98.3 2E-06 4.3E-11 85.6 8.2 90 190-283 63-159 (365)
370 smart00010 small_GTPase Small 98.2 1.5E-06 3.2E-11 72.0 5.3 113 117-272 2-115 (124)
371 TIGR00064 ftsY signal recognit 98.2 3.8E-05 8.3E-10 73.2 15.5 147 115-274 72-259 (272)
372 cd01854 YjeQ_engC YjeQ/EngC. 98.2 4.3E-06 9.2E-11 80.5 8.8 83 193-280 76-161 (287)
373 KOG2423 Nucleolar GTPase [Gene 98.2 8.6E-07 1.9E-11 85.6 3.8 64 111-177 303-366 (572)
374 COG0523 Putative GTPases (G3E 98.2 1.4E-05 3.1E-10 77.7 11.6 154 116-276 2-194 (323)
375 KOG3905 Dynein light intermedi 98.2 3.9E-05 8.4E-10 72.7 13.6 59 225-284 221-291 (473)
376 COG1162 Predicted GTPases [Gen 98.2 2.7E-06 5.8E-11 80.8 6.0 58 115-175 164-228 (301)
377 PRK00098 GTPase RsgA; Reviewed 98.2 2.5E-06 5.4E-11 82.6 5.7 58 115-175 164-228 (298)
378 PRK14974 cell division protein 98.2 4.5E-05 9.7E-10 74.7 14.3 149 114-275 139-322 (336)
379 PF02492 cobW: CobW/HypB/UreG, 98.1 2.6E-05 5.7E-10 69.6 11.3 137 116-261 1-177 (178)
380 KOG0459 Polypeptide release fa 98.1 8.9E-06 1.9E-10 79.1 7.7 154 113-276 77-279 (501)
381 KOG0447 Dynamin-like GTP bindi 98.1 7.6E-05 1.6E-09 75.1 14.0 75 164-240 413-493 (980)
382 cd01854 YjeQ_engC YjeQ/EngC. 98.1 5.6E-06 1.2E-10 79.7 5.9 56 116-174 162-224 (287)
383 KOG2484 GTPase [General functi 98.1 1.7E-06 3.6E-11 84.1 2.2 62 113-177 250-311 (435)
384 PRK14722 flhF flagellar biosyn 98.1 3.2E-05 6.9E-10 76.6 11.0 124 114-240 136-295 (374)
385 PRK12288 GTPase RsgA; Reviewed 98.1 2E-05 4.2E-10 77.7 9.5 84 193-281 118-206 (347)
386 KOG1707 Predicted Ras related/ 98.0 4.4E-05 9.5E-10 77.6 11.5 156 114-284 424-584 (625)
387 KOG2485 Conserved ATP/GTP bind 98.0 9E-06 1.9E-10 76.8 6.0 63 115-177 143-210 (335)
388 PF05783 DLIC: Dynein light in 98.0 0.00012 2.6E-09 74.7 14.0 62 226-288 196-269 (472)
389 PRK01889 GTPase RsgA; Reviewed 98.0 3.1E-05 6.7E-10 76.8 9.5 83 193-279 110-193 (356)
390 KOG0469 Elongation factor 2 [T 97.9 1.9E-05 4E-10 78.7 6.0 113 116-239 20-163 (842)
391 PF00448 SRP54: SRP54-type pro 97.9 0.00011 2.3E-09 66.7 10.6 118 117-241 3-155 (196)
392 PRK11537 putative GTP-binding 97.9 0.00014 3E-09 70.9 11.9 143 114-264 3-186 (318)
393 KOG3859 Septins (P-loop GTPase 97.9 5.9E-05 1.3E-09 70.1 8.4 131 115-248 42-198 (406)
394 PRK12727 flagellar biosynthesi 97.9 0.00019 4.1E-09 73.6 12.7 144 114-271 349-523 (559)
395 cd03115 SRP The signal recogni 97.8 0.00034 7.3E-09 61.9 12.8 117 117-240 2-153 (173)
396 TIGR02475 CobW cobalamin biosy 97.8 0.00028 6.1E-09 69.5 12.9 155 114-276 3-223 (341)
397 PRK11889 flhF flagellar biosyn 97.8 3.9E-05 8.4E-10 75.8 6.6 119 115-240 241-391 (436)
398 COG1161 Predicted GTPases [Gen 97.8 3.6E-05 7.8E-10 75.2 6.3 85 187-276 26-110 (322)
399 cd03114 ArgK-like The function 97.8 0.00016 3.4E-09 62.6 9.4 19 118-136 2-20 (148)
400 TIGR03348 VI_IcmF type VI secr 97.8 6.4E-05 1.4E-09 85.5 8.8 122 114-240 110-257 (1169)
401 COG3640 CooC CO dehydrogenase 97.8 8.4E-05 1.8E-09 67.8 7.7 45 193-239 153-198 (255)
402 KOG2743 Cobalamin synthesis pr 97.8 0.0001 2.2E-09 69.3 8.3 145 109-256 51-241 (391)
403 PRK12726 flagellar biosynthesi 97.7 0.00031 6.7E-09 69.3 11.3 120 114-240 205-356 (407)
404 PRK12724 flagellar biosynthesi 97.7 0.00022 4.9E-09 71.3 9.9 120 115-240 223-373 (432)
405 COG1419 FlhF Flagellar GTP-bin 97.7 0.00025 5.4E-09 70.1 9.9 24 114-137 202-225 (407)
406 PRK12723 flagellar biosynthesi 97.6 0.00063 1.4E-08 67.9 12.4 122 114-241 173-327 (388)
407 COG1618 Predicted nucleotide k 97.6 0.0034 7.4E-08 54.2 14.8 144 116-283 6-176 (179)
408 PRK14721 flhF flagellar biosyn 97.6 0.00017 3.6E-09 72.6 8.1 120 114-240 190-340 (420)
409 PRK00771 signal recognition pa 97.6 0.0005 1.1E-08 69.7 11.3 119 114-240 94-246 (437)
410 PRK10867 signal recognition pa 97.6 0.0011 2.3E-08 67.2 13.3 119 115-240 100-254 (433)
411 KOG1534 Putative transcription 97.5 0.0002 4.3E-09 64.2 6.4 75 164-241 99-179 (273)
412 KOG2484 GTPase [General functi 97.5 0.00044 9.5E-09 67.5 9.1 74 184-257 135-208 (435)
413 cd02038 FleN-like FleN is a me 97.5 0.0014 3.1E-08 55.9 11.3 101 119-239 4-110 (139)
414 PRK05703 flhF flagellar biosyn 97.5 0.0003 6.5E-09 71.3 8.1 120 115-240 221-371 (424)
415 smart00275 G_alpha G protein a 97.5 0.00088 1.9E-08 66.1 10.7 77 155-240 176-265 (342)
416 KOG1533 Predicted GTPase [Gene 97.4 0.00012 2.7E-09 66.5 3.8 123 117-241 4-178 (290)
417 PRK13695 putative NTPase; Prov 97.4 0.0049 1.1E-07 54.6 14.1 87 181-282 82-172 (174)
418 TIGR00959 ffh signal recogniti 97.4 0.0023 5.1E-08 64.7 13.4 72 162-240 182-253 (428)
419 cd03111 CpaE_like This protein 97.4 0.0014 2.9E-08 53.2 9.4 95 118-235 2-106 (106)
420 cd00066 G-alpha G protein alph 97.4 0.00067 1.5E-08 66.3 8.9 76 156-240 154-242 (317)
421 PRK06731 flhF flagellar biosyn 97.4 0.0016 3.4E-08 62.0 10.9 120 114-240 74-225 (270)
422 KOG3887 Predicted small GTPase 97.4 0.0005 1.1E-08 62.8 6.9 116 116-241 28-150 (347)
423 cd03110 Fer4_NifH_child This p 97.4 0.0014 3E-08 58.2 9.8 67 161-240 91-157 (179)
424 PRK06995 flhF flagellar biosyn 97.3 0.00085 1.8E-08 68.7 8.1 147 115-274 256-434 (484)
425 PF09547 Spore_IV_A: Stage IV 97.3 0.0075 1.6E-07 59.9 14.1 159 116-282 18-233 (492)
426 PRK14723 flhF flagellar biosyn 97.2 0.0024 5.2E-08 68.6 10.5 122 115-240 185-337 (767)
427 KOG1424 Predicted GTP-binding 97.1 0.0012 2.6E-08 66.6 7.3 79 187-267 166-244 (562)
428 PRK01889 GTPase RsgA; Reviewed 97.1 0.00038 8.3E-09 69.0 3.3 56 116-174 196-258 (356)
429 PF06858 NOG1: Nucleolar GTP-b 97.0 0.002 4.4E-08 45.6 5.7 44 193-237 11-58 (58)
430 cd02042 ParA ParA and ParB of 97.0 0.0059 1.3E-07 48.9 9.4 66 118-208 2-74 (104)
431 cd01983 Fer4_NifH The Fer4_Nif 97.0 0.0069 1.5E-07 47.1 9.4 71 118-209 2-72 (99)
432 cd02036 MinD Bacterial cell di 97.0 0.0058 1.3E-07 53.9 9.8 109 120-240 5-128 (179)
433 KOG2423 Nucleolar GTPase [Gene 97.0 0.0054 1.2E-07 60.0 9.8 94 189-283 207-300 (572)
434 KOG0780 Signal recognition par 96.8 0.008 1.7E-07 58.8 9.7 93 114-209 100-227 (483)
435 COG3523 IcmF Type VI protein s 96.8 0.0022 4.7E-08 71.7 6.3 119 116-240 126-270 (1188)
436 PF00004 AAA: ATPase family as 96.8 0.0043 9.4E-08 51.5 6.9 21 118-138 1-21 (132)
437 COG1162 Predicted GTPases [Gen 96.7 0.0091 2E-07 57.1 9.5 86 193-282 77-166 (301)
438 KOG0705 GTPase-activating prot 96.7 0.0037 8E-08 63.4 6.9 152 115-281 30-187 (749)
439 PF13401 AAA_22: AAA domain; P 96.7 0.0018 3.9E-08 54.1 3.9 25 115-139 4-28 (131)
440 COG0552 FtsY Signal recognitio 96.6 0.0035 7.7E-08 60.4 5.9 147 114-275 138-327 (340)
441 PRK14737 gmk guanylate kinase; 96.6 0.0015 3.2E-08 58.8 2.6 41 115-155 4-44 (186)
442 COG1116 TauB ABC-type nitrate/ 96.4 0.0024 5.2E-08 59.1 3.0 24 116-139 30-53 (248)
443 PF05621 TniB: Bacterial TniB 96.4 0.016 3.4E-07 55.6 8.4 112 110-235 56-189 (302)
444 cd00009 AAA The AAA+ (ATPases 96.3 0.024 5.3E-07 47.2 8.7 24 116-139 20-43 (151)
445 cd02037 MRP-like MRP (Multiple 96.2 0.028 6E-07 49.4 8.9 107 119-238 4-133 (169)
446 PRK14738 gmk guanylate kinase; 96.2 0.0032 7E-08 57.5 3.0 39 114-152 12-50 (206)
447 PF13207 AAA_17: AAA domain; P 96.2 0.0042 9E-08 51.2 3.3 22 117-138 1-22 (121)
448 cd02032 Bchl_like This family 96.2 0.035 7.7E-07 52.6 10.1 19 117-135 2-20 (267)
449 COG0194 Gmk Guanylate kinase [ 96.2 0.0026 5.6E-08 56.3 1.9 51 116-169 5-55 (191)
450 KOG0446 Vacuolar sorting prote 96.1 0.0032 7E-08 67.0 2.7 96 112-207 26-180 (657)
451 TIGR03263 guanyl_kin guanylate 96.1 0.0054 1.2E-07 54.4 3.5 54 117-172 3-56 (180)
452 COG0541 Ffh Signal recognition 96.0 0.015 3.2E-07 58.0 6.4 90 115-209 100-226 (451)
453 COG1341 Predicted GTPase or GT 96.0 0.03 6.4E-07 55.4 8.4 24 113-136 71-94 (398)
454 PF13555 AAA_29: P-loop contai 96.0 0.0067 1.5E-07 44.0 2.9 20 117-136 25-44 (62)
455 cd00071 GMPK Guanosine monopho 96.0 0.0058 1.3E-07 52.0 3.1 53 118-172 2-55 (137)
456 PRK04195 replication factor C 96.0 0.09 2E-06 54.5 12.5 24 115-138 39-62 (482)
457 PRK13849 putative crown gall t 96.0 0.041 8.8E-07 51.2 8.9 66 161-237 82-151 (231)
458 PF08433 KTI12: Chromatin asso 95.9 0.047 1E-06 52.0 9.4 153 116-284 2-175 (270)
459 PF07015 VirC1: VirC1 protein; 95.9 0.044 9.5E-07 50.5 8.8 101 162-276 83-187 (231)
460 PF00005 ABC_tran: ABC transpo 95.9 0.007 1.5E-07 51.0 3.4 25 116-140 12-36 (137)
461 COG1136 SalX ABC-type antimicr 95.8 0.0067 1.5E-07 55.8 3.0 24 116-139 32-55 (226)
462 PHA02518 ParA-like protein; Pr 95.8 0.089 1.9E-06 47.6 10.5 66 162-239 76-146 (211)
463 COG3840 ThiQ ABC-type thiamine 95.8 0.0069 1.5E-07 53.5 2.7 24 116-139 26-49 (231)
464 KOG0082 G-protein alpha subuni 95.7 0.073 1.6E-06 52.2 9.9 77 155-240 187-276 (354)
465 TIGR03574 selen_PSTK L-seryl-t 95.6 0.23 5E-06 46.6 12.7 20 118-137 2-21 (249)
466 PF05729 NACHT: NACHT domain 95.6 0.035 7.6E-07 47.9 6.7 22 117-138 2-23 (166)
467 PRK00300 gmk guanylate kinase; 95.6 0.012 2.7E-07 53.3 3.8 24 116-139 6-29 (205)
468 PF13671 AAA_33: AAA domain; P 95.6 0.011 2.3E-07 50.2 3.1 20 118-137 2-21 (143)
469 cd02019 NK Nucleoside/nucleoti 95.5 0.011 2.4E-07 43.9 2.7 21 118-138 2-22 (69)
470 PRK07261 topology modulation p 95.5 0.0098 2.1E-07 52.6 2.9 21 117-137 2-22 (171)
471 PF13521 AAA_28: AAA domain; P 95.5 0.008 1.7E-07 52.5 2.2 22 117-138 1-22 (163)
472 PF01656 CbiA: CobQ/CobB/MinD/ 95.5 0.012 2.5E-07 52.6 3.3 73 163-246 95-168 (195)
473 KOG0781 Signal recognition par 95.5 0.032 6.9E-07 56.1 6.3 125 112-241 375-545 (587)
474 PF03205 MobB: Molybdopterin g 95.5 0.013 2.9E-07 50.0 3.3 23 116-138 1-23 (140)
475 PRK08233 hypothetical protein; 95.4 0.012 2.7E-07 52.0 3.2 25 114-138 2-26 (182)
476 PRK08118 topology modulation p 95.4 0.011 2.4E-07 52.1 2.9 22 117-138 3-24 (167)
477 PRK08181 transposase; Validate 95.4 0.026 5.6E-07 53.8 5.5 22 116-137 107-128 (269)
478 smart00382 AAA ATPases associa 95.4 0.013 2.9E-07 48.3 3.2 24 116-139 3-26 (148)
479 KOG2203 GTP-binding protein [G 95.4 0.013 2.9E-07 59.5 3.6 90 111-201 33-126 (772)
480 COG0563 Adk Adenylate kinase a 95.4 0.012 2.6E-07 52.4 2.9 22 117-138 2-23 (178)
481 TIGR01969 minD_arch cell divis 95.4 0.25 5.3E-06 46.1 11.9 64 163-239 109-173 (251)
482 PF13238 AAA_18: AAA domain; P 95.4 0.014 3E-07 48.2 3.0 21 118-138 1-21 (129)
483 KOG2485 Conserved ATP/GTP bind 95.3 0.053 1.2E-06 51.8 7.1 65 186-254 37-101 (335)
484 TIGR01360 aden_kin_iso1 adenyl 95.3 0.014 3.1E-07 51.9 3.1 24 114-137 2-25 (188)
485 CHL00072 chlL photochlorophyll 95.3 0.092 2E-06 50.6 8.9 19 117-135 2-20 (290)
486 KOG0066 eIF2-interacting prote 95.3 0.13 2.9E-06 51.3 9.8 22 117-138 615-636 (807)
487 PRK10751 molybdopterin-guanine 95.2 0.016 3.6E-07 51.2 3.3 25 114-138 5-29 (173)
488 cd02117 NifH_like This family 95.2 0.14 3.1E-06 46.7 9.7 19 117-135 2-20 (212)
489 TIGR00235 udk uridine kinase. 95.2 0.014 3.1E-07 53.2 2.9 25 114-138 5-29 (207)
490 PF02263 GBP: Guanylate-bindin 95.2 0.025 5.5E-07 53.6 4.6 61 115-175 21-86 (260)
491 COG1126 GlnQ ABC-type polar am 95.2 0.018 3.8E-07 52.4 3.3 26 114-139 27-52 (240)
492 COG3839 MalK ABC-type sugar tr 95.2 0.015 3.2E-07 56.9 3.0 24 116-139 30-53 (338)
493 cd00820 PEPCK_HprK Phosphoenol 95.1 0.017 3.8E-07 46.8 2.9 20 117-136 17-36 (107)
494 PF05879 RHD3: Root hair defec 95.1 0.014 3.1E-07 63.3 3.0 83 121-203 1-88 (742)
495 PRK05480 uridine/cytidine kina 95.1 0.016 3.6E-07 52.8 3.0 25 114-138 5-29 (209)
496 TIGR03371 cellulose_yhjQ cellu 95.1 0.22 4.8E-06 46.3 10.7 65 164-239 116-181 (246)
497 COG4525 TauB ABC-type taurine 95.1 0.016 3.4E-07 51.9 2.7 22 117-138 33-54 (259)
498 PRK10078 ribose 1,5-bisphospho 95.1 0.017 3.7E-07 51.7 3.0 22 117-138 4-25 (186)
499 cd03222 ABC_RNaseL_inhibitor T 95.1 0.016 3.5E-07 51.5 2.8 24 116-139 26-49 (177)
500 cd03225 ABC_cobalt_CbiO_domain 95.1 0.017 3.8E-07 52.6 3.0 24 116-139 28-51 (211)
No 1
>COG1159 Era GTPase [General function prediction only]
Probab=100.00 E-value=3e-70 Score=505.70 Aligned_cols=295 Identities=45% Similarity=0.697 Sum_probs=281.6
Q ss_pred CCCCccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHH
Q 014942 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (415)
Q Consensus 111 ~~~~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~ 190 (415)
+.++++.|+|+|+||||||||+|+|+|.+.+++|+.|+|||+.+.++++.++.+++|+||||++ .+.+.+...|++.+.
T Consensus 2 ~~~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih-~pk~~l~~~m~~~a~ 80 (298)
T COG1159 2 MKFKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIH-KPKHALGELMNKAAR 80 (298)
T ss_pred CCceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCC-CcchHHHHHHHHHHH
Confidence 3468999999999999999999999999999999999999999999999999999999999995 568899999999999
Q ss_pred hhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChhH-HHHHHHHHhhcCCCccEEEcccCCCC
Q 014942 191 SAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE-IAKKLEWYEKFTDVDEVIPVSAKYGH 269 (415)
Q Consensus 191 ~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~i~~vSA~~g~ 269 (415)
.++.++|+++||+|+.+++...++++.+.++. .+.|+++++||+|+.++.. +....+.+.....+..++++||++|.
T Consensus 81 ~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~--~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~ 158 (298)
T COG1159 81 SALKDVDLILFVVDADEGWGPGDEFILEQLKK--TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKGD 158 (298)
T ss_pred HHhccCcEEEEEEeccccCCccHHHHHHHHhh--cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeeccccC
Confidence 99999999999999999998889999988877 6789999999999988766 56777888888888899999999999
Q ss_pred CHHHHHHHHHhhCCCCCCCCCCCCccccCCchhHHHHHHHHHHHHhhcCCCCCceEEEEEEEEEecCCCeeEEEEEEEEe
Q 014942 270 GVEDIRDWILTKLPLGPAYYPKFQDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTRPTAKDFIQVEIVVE 349 (415)
Q Consensus 270 gv~eL~~~L~~~l~~~~~~~~~~~~~~t~~~~~~~i~eiireki~~~~~~eipys~~v~i~~~~~~~~~~~~i~~~~~~~ 349 (415)
|++.|.+.|...+|++||+||+ +++||+|++|+++|++||++|..+++|+||++.|.++.++.++++.+.|.+.|+|+
T Consensus 159 n~~~L~~~i~~~Lpeg~~~yp~--d~itD~~~rf~~aEiiREk~~~~l~eElPhsv~VeIe~~~~~~~~~~~I~a~I~Ve 236 (298)
T COG1159 159 NVDTLLEIIKEYLPEGPWYYPE--DQITDRPERFLAAEIIREKLLLLLREELPHSVAVEIEEFEEREKGLLKIHATIYVE 236 (298)
T ss_pred CHHHHHHHHHHhCCCCCCcCCh--hhccCChHHHHHHHHHHHHHHHhcccccCceEEEEEEEEEecCCCeEEEEEEEEEe
Confidence 9999999999999999999999 99999999999999999999999999999999999999999878899999999999
Q ss_pred eCCceeEEeecCChHHHHHHHHHHHHHHHHhCCcEEEEEEEEeCCCcccChHHHhhcCCcc
Q 014942 350 KNSQKIILIGKGGKALKLLATAARLDIEDFLQKKVYLEIEVKVKENWRQDEGLLKHYGYGG 410 (415)
Q Consensus 350 r~~q~~iiiG~~g~~i~~i~~~ar~~l~~~~~~~v~l~l~vk~~~~w~~~~~~l~~~g~~~ 410 (415)
|+|||+|+||++|++||+|+.+||++||++|+++|||.|||||+++||++...|++|||..
T Consensus 237 r~sQK~IiIGk~G~~iK~IG~~AR~~ie~l~~~kV~L~L~VKVk~~W~~~~~~l~~lgy~~ 297 (298)
T COG1159 237 RESQKGIIIGKNGAMIKKIGTAARKDIEKLLGCKVYLELWVKVKKNWRDDEEALRELGYED 297 (298)
T ss_pred cCCccceEECCCcHHHHHHHHHHHHHHHHHhCCceEEEEEEEEccccccCHHHHHHcCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999974
No 2
>PRK15494 era GTPase Era; Provisional
Probab=100.00 E-value=5.1e-61 Score=470.40 Aligned_cols=289 Identities=31% Similarity=0.496 Sum_probs=258.3
Q ss_pred CCccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhh
Q 014942 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (415)
Q Consensus 113 ~~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~ 192 (415)
.+.++|+++|.+|||||||+|+|++.++..+++.++||++...+.+..++.++.||||||+. ..+..+...+.+.+..+
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~-~~~~~l~~~~~r~~~~~ 128 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIF-EPKGSLEKAMVRCAWSS 128 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcC-CCcccHHHHHHHHHHHH
Confidence 46679999999999999999999999998889999999998888888888999999999974 34555666677777778
Q ss_pred hcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHHHHHHHhhcCCCccEEEcccCCCCCHH
Q 014942 193 GINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVE 272 (415)
Q Consensus 193 ~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gv~ 272 (415)
+..||++|+|+|++++......++...++. .+.|.++|+||+|+... ......+.+.....+..++++||++|.|++
T Consensus 129 l~~aDvil~VvD~~~s~~~~~~~il~~l~~--~~~p~IlViNKiDl~~~-~~~~~~~~l~~~~~~~~i~~iSAktg~gv~ 205 (339)
T PRK15494 129 LHSADLVLLIIDSLKSFDDITHNILDKLRS--LNIVPIFLLNKIDIESK-YLNDIKAFLTENHPDSLLFPISALSGKNID 205 (339)
T ss_pred hhhCCEEEEEEECCCCCCHHHHHHHHHHHh--cCCCEEEEEEhhcCccc-cHHHHHHHHHhcCCCcEEEEEeccCccCHH
Confidence 899999999999988777776666666655 56788999999999754 344444555444445689999999999999
Q ss_pred HHHHHHHhhCCCCCCCCCCCCccccCCchhHHHHHHHHHHHHhhcCCCCCceEEEEEEEEEecCCCeeEEEEEEEEeeCC
Q 014942 273 DIRDWILTKLPLGPAYYPKFQDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTRPTAKDFIQVEIVVEKNS 352 (415)
Q Consensus 273 eL~~~L~~~l~~~~~~~~~~~~~~t~~~~~~~i~eiireki~~~~~~eipys~~v~i~~~~~~~~~~~~i~~~~~~~r~~ 352 (415)
+|+++|.+.++++||+||+ +++|++|++|+++|++||++|.++++|+||++.+.++.|++++++.++|.+.|+|+|+|
T Consensus 206 eL~~~L~~~l~~~~~~~~~--~~~td~~~~~~~~eiiRe~~~~~~~~EiP~~~~v~i~~~~~~~~~~~~i~~~i~v~~~s 283 (339)
T PRK15494 206 GLLEYITSKAKISPWLYAE--DDITDLPMRFIAAEITREQLFLNLQKELPYKLTVQTEKWEDLKDKSVKINQVIVVSRES 283 (339)
T ss_pred HHHHHHHHhCCCCCCCCCC--CCCCCCCHHHHHHHHHHHHHHhhCCcccCceEEEEEEEEEEcCCCeEEEEEEEEECCCC
Confidence 9999999999999999999 99999999999999999999999999999999999999999776788999999999999
Q ss_pred ceeEEeecCChHHHHHHHHHHHHHHHHhCCcEEEEEEEEeCCCcccChHHHhhcC
Q 014942 353 QKIILIGKGGKALKLLATAARLDIEDFLQKKVYLEIEVKVKENWRQDEGLLKHYG 407 (415)
Q Consensus 353 q~~iiiG~~g~~i~~i~~~ar~~l~~~~~~~v~l~l~vk~~~~w~~~~~~l~~~g 407 (415)
||.|+||++|++||+|+..||++||++||++|+|.|||||+++||++...|++|.
T Consensus 284 qk~iiiG~~g~~ik~i~~~ar~~le~~~~~~v~l~l~Vkv~~~w~~~~~~l~~~~ 338 (339)
T PRK15494 284 YKTIILGKNGSKIKEIGAKSRMQMERFFGFPVHLFLFVKVRELWENNQEFYQYMK 338 (339)
T ss_pred ceeEEEcCCcHHHHHHHHHHHHHHHHHhCCCeEEEEEEEECCCcccCHHHHhhcc
Confidence 9999999999999999999999999999999999999999999999999999884
No 3
>PRK00089 era GTPase Era; Reviewed
Probab=100.00 E-value=2.2e-59 Score=451.99 Aligned_cols=290 Identities=46% Similarity=0.713 Sum_probs=263.0
Q ss_pred CCCccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHh
Q 014942 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (415)
Q Consensus 112 ~~~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~ 191 (415)
.+|++.|+++|.||||||||+|+|++.+++.++..++||+....++...++.++.|+||||+.. ....+...+...+..
T Consensus 2 ~~~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~-~~~~l~~~~~~~~~~ 80 (292)
T PRK00089 2 GFKSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHK-PKRALNRAMNKAAWS 80 (292)
T ss_pred CceeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCC-chhHHHHHHHHHHHH
Confidence 3588999999999999999999999999999999999999998888887778999999999853 335566666777778
Q ss_pred hhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCC-ChhHHHHHHHHHhhcCCCccEEEcccCCCCC
Q 014942 192 AGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI-KPGEIAKKLEWYEKFTDVDEVIPVSAKYGHG 270 (415)
Q Consensus 192 ~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~-~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~g 270 (415)
++..+|++++|+|++++.......+...+.. .+.|+++|+||+|+. ....+....+.+....++.+++++||++|.|
T Consensus 81 ~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~--~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~g 158 (292)
T PRK00089 81 SLKDVDLVLFVVDADEKIGPGDEFILEKLKK--VKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGDN 158 (292)
T ss_pred HHhcCCEEEEEEeCCCCCChhHHHHHHHHhh--cCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCC
Confidence 8899999999999998766666677666665 578999999999998 4455666666666656677899999999999
Q ss_pred HHHHHHHHHhhCCCCCCCCCCCCccccCCchhHHHHHHHHHHHHhhcCCCCCceEEEEEEEEEecCCCeeEEEEEEEEee
Q 014942 271 VEDIRDWILTKLPLGPAYYPKFQDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTRPTAKDFIQVEIVVEK 350 (415)
Q Consensus 271 v~eL~~~L~~~l~~~~~~~~~~~~~~t~~~~~~~i~eiireki~~~~~~eipys~~v~i~~~~~~~~~~~~i~~~~~~~r 350 (415)
+++|+++|.+.++++||.||. +.+++++++++++|++||++|.++++|+||++.+.++.|+++ +.++|.+.|+|+|
T Consensus 159 v~~L~~~L~~~l~~~~~~y~~--~~~td~~~r~~~~EiiRe~~~~~l~~e~p~~~~v~~~~~~~~--~~~~i~~~i~v~~ 234 (292)
T PRK00089 159 VDELLDVIAKYLPEGPPYYPE--DQITDRPERFLAAEIIREKLLRLLGDELPYSVAVEIEKFEER--GLVRIEATIYVER 234 (292)
T ss_pred HHHHHHHHHHhCCCCCCCCCC--CCCCCCCHHHHHHHHHHHHHHhhCCccCCceEEEEEEEEEEC--CeEEEEEEEEEcc
Confidence 999999999999999999999 999999999999999999999999999999999999999986 5788999999999
Q ss_pred CCceeEEeecCChHHHHHHHHHHHHHHHHhCCcEEEEEEEEeCCCcccChHHHhhcCC
Q 014942 351 NSQKIILIGKGGKALKLLATAARLDIEDFLQKKVYLEIEVKVKENWRQDEGLLKHYGY 408 (415)
Q Consensus 351 ~~q~~iiiG~~g~~i~~i~~~ar~~l~~~~~~~v~l~l~vk~~~~w~~~~~~l~~~g~ 408 (415)
++||.|+||++|++||+|+.+||++||++|+++|||+|||||+++||+++..|++|||
T Consensus 235 ~~~k~i~ig~~g~~i~~i~~~ar~~l~~~~~~~v~l~l~vkv~~~w~~~~~~~~~~g~ 292 (292)
T PRK00089 235 DSQKGIIIGKGGAMLKKIGTEARKDIEKLLGKKVFLELWVKVKKGWRDDEKALRELGY 292 (292)
T ss_pred CCceeEEEeCCcHHHHHHHHHHHHHHHHHhCCCEEEEEEEEECCCccCCHHHHHhcCC
Confidence 9999999999999999999999999999999999999999999999999999999998
No 4
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=100.00 E-value=5.1e-56 Score=423.45 Aligned_cols=270 Identities=40% Similarity=0.568 Sum_probs=239.9
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhcc
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (415)
++|+++|+||||||||+|+|++.++.++++.++||++.+.++...++.++.||||||+.. ....+...+.+.+..++..
T Consensus 1 g~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~-~~~~l~~~~~~~~~~~l~~ 79 (270)
T TIGR00436 1 GFVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHE-KKHSLNRLMMKEARSAIGG 79 (270)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCC-CcchHHHHHHHHHHHHHhh
Confidence 479999999999999999999999998999999999988888888888999999999853 3445566677777888999
Q ss_pred cceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHHHHHHHhhcCCCccEEEcccCCCCCHHHHH
Q 014942 196 ADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIR 275 (415)
Q Consensus 196 aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gv~eL~ 275 (415)
+|++++|+|+++..... ..+...+.. .+.|+++|+||+|+.....+......+.....+.+++++||++|.|+++|+
T Consensus 80 aDvvl~VvD~~~~~~~~-~~i~~~l~~--~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~L~ 156 (270)
T TIGR00436 80 VDLILFVVDSDQWNGDG-EFVLTKLQN--LKRPVVLTRNKLDNKFKDKLLPLIDKYAILEDFKDIVPISALTGDNTSFLA 156 (270)
T ss_pred CCEEEEEEECCCCCchH-HHHHHHHHh--cCCCEEEEEECeeCCCHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHH
Confidence 99999999998765443 555555555 678999999999998665554444455444455689999999999999999
Q ss_pred HHHHhhCCCCCCCCCCCCccccCCchhHHHHHHHHHHHHhhcCCCCCceEEEEEEEEEecCCCeeEEEEEEEEeeCCcee
Q 014942 276 DWILTKLPLGPAYYPKFQDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTRPTAKDFIQVEIVVEKNSQKI 355 (415)
Q Consensus 276 ~~L~~~l~~~~~~~~~~~~~~t~~~~~~~i~eiireki~~~~~~eipys~~v~i~~~~~~~~~~~~i~~~~~~~r~~q~~ 355 (415)
++|.+.++++||.||. +++|+++++++++|++||++|.++++|+||++.+.++.|++++++.++|.+.|+|+|+|||.
T Consensus 157 ~~l~~~l~~~~~~~~~--~~~t~~~~~~~~~e~ire~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~i~~~i~v~~~s~k~ 234 (270)
T TIGR00436 157 AFIEVHLPEGPFRYPE--DYVTDQPDRFKISEIIREKIIRYTKEEIPHSVRVEIERKSFNEKGLLKIHALISVERESQKK 234 (270)
T ss_pred HHHHHhCCCCCCCCCC--cccCCCCHHHHHHHHHHHHHHHhcccccCceEEEEEEEEEECCCCeEEEEEEEEECcCCcee
Confidence 9999999999999999 99999999999999999999999999999999999999999876778999999999999999
Q ss_pred EEeecCChHHHHHHHHHHHHHHHHhCCcEEEEEEEE
Q 014942 356 ILIGKGGKALKLLATAARLDIEDFLQKKVYLEIEVK 391 (415)
Q Consensus 356 iiiG~~g~~i~~i~~~ar~~l~~~~~~~v~l~l~vk 391 (415)
|+||++|++||+|+++||++||++||++|||.||||
T Consensus 235 iiig~~g~~ik~i~~~ar~~l~~~~~~~v~l~l~vk 270 (270)
T TIGR00436 235 IIIGKNGSMIKAIGIAARKDILELFDCDVFLELFVK 270 (270)
T ss_pred EEEcCCcHHHHHHHHHHHHHHHHHhCCCEEEEEEEC
Confidence 999999999999999999999999999999999997
No 5
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=100.00 E-value=2.5e-50 Score=370.10 Aligned_cols=279 Identities=46% Similarity=0.737 Sum_probs=241.3
Q ss_pred CCCccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhh---hhhHhHHHHHH
Q 014942 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK---IHMLDSMMMKN 188 (415)
Q Consensus 112 ~~~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~---~~~l~~~~~~~ 188 (415)
..++..|+++|.||||||||.|.++|.++.+++.++.||+..+.++++.+..+++|+||||+.... .+.+...+.+.
T Consensus 69 ~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~ 148 (379)
T KOG1423|consen 69 AQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQN 148 (379)
T ss_pred cceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhC
Confidence 458889999999999999999999999999999999999999999999999999999999997533 23333445567
Q ss_pred HHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHH-HH----------------HHHHH
Q 014942 189 VRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AK----------------KLEWY 251 (415)
Q Consensus 189 ~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~-~~----------------~~~~~ 251 (415)
.+.++..||++++|+|+++......-.++..+... ...|-++|+||+|......+ .. +.+.+
T Consensus 149 ~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~y-s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~f 227 (379)
T KOG1423|consen 149 PRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEY-SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEKF 227 (379)
T ss_pred HHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHH-hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHHHh
Confidence 88889999999999999864444444444444443 67899999999998754322 11 11111
Q ss_pred hh------------cCCCccEEEcccCCCCCHHHHHHHHHhhCCCCCCCCCCCCccccCCchhHHHHHHHHHHHHhhcCC
Q 014942 252 EK------------FTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKFQDIVSEHPERFFVGEIIREKIFMQYRN 319 (415)
Q Consensus 252 ~~------------~~~~~~i~~vSA~~g~gv~eL~~~L~~~l~~~~~~~~~~~~~~t~~~~~~~i~eiireki~~~~~~ 319 (415)
.. ...|..+|++||++|.||++|.++|...++++||.||. +.+|+++.++++.|++||+++.++++
T Consensus 228 ~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gpW~y~a--~i~T~~s~e~l~~e~VReklLd~~pq 305 (379)
T KOG1423|consen 228 TDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGPWKYPA--DIVTEESPEFLCSESVREKLLDHLPQ 305 (379)
T ss_pred ccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCCCCCCc--ccccccCHHHHHHHHHHHHHHhhCcc
Confidence 11 22356799999999999999999999999999999999 99999999999999999999999999
Q ss_pred CCCceEEEEEEEEEecCCCeeEEEEEEEEeeCCceeEEeecCChHHHHHHHHHHHHHHHHhCCcEEEEEEEEeC
Q 014942 320 EVPYACQVNVVSYKTRPTAKDFIQVEIVVEKNSQKIILIGKGGKALKLLATAARLDIEDFLQKKVYLEIEVKVK 393 (415)
Q Consensus 320 eipys~~v~i~~~~~~~~~~~~i~~~~~~~r~~q~~iiiG~~g~~i~~i~~~ar~~l~~~~~~~v~l~l~vk~~ 393 (415)
||||.+++++..|++++++.++|++++.|.+.+|+.++||++|..|++|+++|+.||++||+++|+|.|.||++
T Consensus 306 EVPY~lq~~i~~w~e~~~g~l~I~~~v~~pK~s~~klliGkgG~ki~qI~~~a~~dL~~if~r~V~l~l~Vk~k 379 (379)
T KOG1423|consen 306 EVPYNLQVRILSWKERPAGVLFIQVEVVCPKNSQKKLLIGKGGKKISQIGTRANEDLEDIFQRKVFLRLSVKLK 379 (379)
T ss_pred ccCcceEEEEEEeeecCCcEEEEEEEEEcCCCcceeEEEcCCCccHHHHHHHHHHHHHHHhhceeeEEEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999975
No 6
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.97 E-value=8.5e-32 Score=262.81 Aligned_cols=225 Identities=31% Similarity=0.462 Sum_probs=185.8
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhcc
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (415)
+.|+|+|.||||||||+|+|++.+.++|++.||+||+++.+...+.+..+.++||+|+.....+.+...+.+++..++..
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~e 83 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEE 83 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHh
Confidence 68999999999999999999999999999999999999999999999999999999996555567888899999999999
Q ss_pred cceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHHHHHHHhhcCCCccEEEcccCCCCCHHHHH
Q 014942 196 ADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIR 275 (415)
Q Consensus 196 aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gv~eL~ 275 (415)
||++|||+|+..+....++.+.+.++. .++|+++|+||+|....+. ...+.+. .++..++++||.+|.|+.+|+
T Consensus 84 ADvilfvVD~~~Git~~D~~ia~~Lr~--~~kpviLvvNK~D~~~~e~--~~~efys--lG~g~~~~ISA~Hg~Gi~dLl 157 (444)
T COG1160 84 ADVILFVVDGREGITPADEEIAKILRR--SKKPVILVVNKIDNLKAEE--LAYEFYS--LGFGEPVPISAEHGRGIGDLL 157 (444)
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHh--cCCCEEEEEEcccCchhhh--hHHHHHh--cCCCCceEeehhhccCHHHHH
Confidence 999999999999999999999999986 7899999999999874332 2233333 366789999999999999999
Q ss_pred HHHHhhCCCCCCCCCCCCccccCCchhHHHHHHHHHHHHhhcCCCCCceEEEEEEEEEec------CC-CeeEEEEEEEE
Q 014942 276 DWILTKLPLGPAYYPKFQDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTR------PT-AKDFIQVEIVV 348 (415)
Q Consensus 276 ~~L~~~l~~~~~~~~~~~~~~t~~~~~~~i~eiireki~~~~~~eipys~~v~i~~~~~~------~~-~~~~i~~~~~~ 348 (415)
+.+.+.+| .+...+. ... +.+.+ ++ ...+|++|+|+.+|.+.++++ ++ |.+.|. ..+
T Consensus 158 d~v~~~l~-~~e~~~~--~~~-~~~ik--ia--------iiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~--~~~ 221 (444)
T COG1160 158 DAVLELLP-PDEEEEE--EEE-TDPIK--IA--------IIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSID--IEF 221 (444)
T ss_pred HHHHhhcC-Ccccccc--ccc-CCceE--EE--------EEeCCCCCchHHHHHhccCceEEecCCCCcccccee--eeE
Confidence 99999997 3322221 100 11221 22 234999999999999988876 33 566675 556
Q ss_pred eeCCceeEEeecCC
Q 014942 349 EKNSQKIILIGKGG 362 (415)
Q Consensus 349 ~r~~q~~iiiG~~g 362 (415)
+++++++.+|++.|
T Consensus 222 e~~~~~~~liDTAG 235 (444)
T COG1160 222 ERDGRKYVLIDTAG 235 (444)
T ss_pred EECCeEEEEEECCC
Confidence 88999999999999
No 7
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.95 E-value=2.3e-27 Score=235.67 Aligned_cols=191 Identities=24% Similarity=0.264 Sum_probs=148.4
Q ss_pred EEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCe-eEEEEeCCCCchhhhh--hHhHHHHHHHHhhh
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEY-QMILYDTPGIIEKKIH--MLDSMMMKNVRSAG 193 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~-~l~liDtpG~~~~~~~--~l~~~~~~~~~~~~ 193 (415)
.|+|+|.||||||||+|+|++.+. .++.+|+||+.++.+++...+. .++|+||||+...... .+... +...+
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~-~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~----~l~~i 235 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKP-KVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIR----FLKHL 235 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcc-cccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHH----HHHHH
Confidence 699999999999999999999875 6899999999999999887654 5999999998642211 13333 33457
Q ss_pred cccceEEEEecCCCC----CchHHHHHHHHhcccC---CCCCEEEEEeCCCCCChhHHHHHHHHHhhcCCC-ccEEEccc
Q 014942 194 INADCIVVLVDACKA----PERIDEILEEGVGDHK---DKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDV-DEVIPVSA 265 (415)
Q Consensus 194 ~~aD~ii~VvD~~~~----~~~~~~~l~~~l~~~~---~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~-~~i~~vSA 265 (415)
..+|++++|+|++.. .......+.+.+.... .++|+++|+||+|+.....+......+...... .+++++||
T Consensus 236 ~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~~~~~~~Vi~ISA 315 (390)
T PRK12298 236 ERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEALGWEGPVYLISA 315 (390)
T ss_pred HhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHHhCCCCCEEEEEC
Confidence 899999999998721 1122223333333211 368999999999998765555444444433333 37899999
Q ss_pred CCCCCHHHHHHHHHhhCCCCCCCCCCCCccccCCchhHHHHHHHHHHHH
Q 014942 266 KYGHGVEDIRDWILTKLPLGPAYYPKFQDIVSEHPERFFVGEIIREKIF 314 (415)
Q Consensus 266 ~~g~gv~eL~~~L~~~l~~~~~~~~~~~~~~t~~~~~~~i~eiireki~ 314 (415)
+++.|+++|++.|.+.++++|++||+ ++.++++++|+++|++||++.
T Consensus 316 ~tg~GIdeLl~~I~~~L~~~~~~~~~--~~~td~~~~~~~~EiiRE~~~ 362 (390)
T PRK12298 316 ASGLGVKELCWDLMTFIEENPREEAE--EAEAPEKVEFMWDDYHREQLE 362 (390)
T ss_pred CCCcCHHHHHHHHHHHhhhCcccCCc--ccccCccHHHHHHHHHHHHhh
Confidence 99999999999999999999999999 999999999999999999985
No 8
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.93 E-value=6.1e-26 Score=222.40 Aligned_cols=162 Identities=32% Similarity=0.451 Sum_probs=139.6
Q ss_pred ccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhc
Q 014942 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (415)
..+++|+|.||||||||+|+|++.+.++|++.|||||+.+...+..+|+.+.++||+|+. +..+.++..+++..+..+.
T Consensus 217 G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiR-et~d~VE~iGIeRs~~~i~ 295 (454)
T COG0486 217 GLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIR-ETDDVVERIGIERAKKAIE 295 (454)
T ss_pred CceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcc-cCccHHHHHHHHHHHHHHH
Confidence 448999999999999999999999999999999999999999999999999999999995 6778899999999999999
Q ss_pred ccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHHHHHHHhhcCCCccEEEcccCCCCCHHHH
Q 014942 195 NADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDI 274 (415)
Q Consensus 195 ~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gv~eL 274 (415)
.||+++||+|++.+....+..+.. .. ..++|+++|+||+|+..+...... +.....+++.+||++|.|++.|
T Consensus 296 ~ADlvL~v~D~~~~~~~~d~~~~~-~~--~~~~~~i~v~NK~DL~~~~~~~~~-----~~~~~~~~i~iSa~t~~Gl~~L 367 (454)
T COG0486 296 EADLVLFVLDASQPLDKEDLALIE-LL--PKKKPIIVVLNKADLVSKIELESE-----KLANGDAIISISAKTGEGLDAL 367 (454)
T ss_pred hCCEEEEEEeCCCCCchhhHHHHH-hc--ccCCCEEEEEechhcccccccchh-----hccCCCceEEEEecCccCHHHH
Confidence 999999999999876666665655 22 267999999999999876543322 1222336899999999999999
Q ss_pred HHHHHhhCCCC
Q 014942 275 RDWILTKLPLG 285 (415)
Q Consensus 275 ~~~L~~~l~~~ 285 (415)
.+.|.+.+...
T Consensus 368 ~~~i~~~~~~~ 378 (454)
T COG0486 368 REAIKQLFGKG 378 (454)
T ss_pred HHHHHHHHhhc
Confidence 99999988764
No 9
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.92 E-value=1.4e-24 Score=222.36 Aligned_cols=224 Identities=26% Similarity=0.337 Sum_probs=161.4
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhcc
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (415)
++|+|+|.||||||||+|+|++.....+...+++|++.........+..+.+|||||+. .....+...+...+..++..
T Consensus 39 ~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~-~~~~~~~~~~~~~~~~~~~~ 117 (472)
T PRK03003 39 PVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWE-PDAKGLQASVAEQAEVAMRT 117 (472)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcC-CcchhHHHHHHHHHHHHHHh
Confidence 58999999999999999999998887788999999998888888888899999999974 22334555566667778999
Q ss_pred cceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHHHHHHHhhcCCCccEEEcccCCCCCHHHHH
Q 014942 196 ADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIR 275 (415)
Q Consensus 196 aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gv~eL~ 275 (415)
||++|+|+|++++....+..+...++. .++|+++|+||+|+..... .....+. .++..+++|||++|.|+++|+
T Consensus 118 aD~il~VvD~~~~~s~~~~~i~~~l~~--~~~piilV~NK~Dl~~~~~--~~~~~~~--~g~~~~~~iSA~~g~gi~eL~ 191 (472)
T PRK03003 118 ADAVLFVVDATVGATATDEAVARVLRR--SGKPVILAANKVDDERGEA--DAAALWS--LGLGEPHPVSALHGRGVGDLL 191 (472)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHH--cCCCEEEEEECccCCccch--hhHHHHh--cCCCCeEEEEcCCCCCcHHHH
Confidence 999999999998876666667777766 6899999999999864321 1112222 233456899999999999999
Q ss_pred HHHHhhCCCCCCCCCCCCccccCCchhHHHHHHHHHHHHhhcCCCCCceEEEEEEEEEec------CC-CeeEEEEEEEE
Q 014942 276 DWILTKLPLGPAYYPKFQDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTR------PT-AKDFIQVEIVV 348 (415)
Q Consensus 276 ~~L~~~l~~~~~~~~~~~~~~t~~~~~~~i~eiireki~~~~~~eipys~~v~i~~~~~~------~~-~~~~i~~~~~~ 348 (415)
++|.+.++..+...+. ...+ + ++....++++|+|+.++.+.+..+ ++ +.+.+.. .+
T Consensus 192 ~~i~~~l~~~~~~~~~-----~~~~--------~--kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~--~~ 254 (472)
T PRK03003 192 DAVLAALPEVPRVGSA-----SGGP--------R--RVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDS--LI 254 (472)
T ss_pred HHHHhhcccccccccc-----cccc--------e--EEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceE--EE
Confidence 9999988653211100 0011 1 233445788888887665544322 23 2333332 33
Q ss_pred eeCCceeEEeecCCh
Q 014942 349 EKNSQKIILIGKGGK 363 (415)
Q Consensus 349 ~r~~q~~iiiG~~g~ 363 (415)
+..++...++++.|-
T Consensus 255 ~~~~~~~~l~DTaG~ 269 (472)
T PRK03003 255 ELGGKTWRFVDTAGL 269 (472)
T ss_pred EECCEEEEEEECCCc
Confidence 456777889999993
No 10
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.91 E-value=1.3e-24 Score=188.02 Aligned_cols=155 Identities=34% Similarity=0.424 Sum_probs=110.9
Q ss_pred EEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhccc
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~a 196 (415)
+|+++|.||||||||+|+|+|.+.. ++++||+|.+...+.+...+..+.++|+||+..-...+..+.....+.. ....
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~~~-v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~-~~~~ 79 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAKQK-VGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLL-SEKP 79 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSEE-EEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHH-HTSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCCce-ecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHh-hcCC
Confidence 7999999999999999999999954 8999999999999999988899999999997553333333333222222 3689
Q ss_pred ceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHHHHHHHhhcCCCccEEEcccCCCCCHHHHHH
Q 014942 197 DCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRD 276 (415)
Q Consensus 197 D~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gv~eL~~ 276 (415)
|++++|+|+++. +.. ..+...+.. .++|+++|+||+|+..+..+.-..+.+.+..+ .|++++||++|.|+++|++
T Consensus 80 D~ii~VvDa~~l-~r~-l~l~~ql~e--~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg-~pvi~~sa~~~~g~~~L~~ 154 (156)
T PF02421_consen 80 DLIIVVVDATNL-ERN-LYLTLQLLE--LGIPVVVVLNKMDEAERKGIEIDAEKLSERLG-VPVIPVSARTGEGIDELKD 154 (156)
T ss_dssp SEEEEEEEGGGH-HHH-HHHHHHHHH--TTSSEEEEEETHHHHHHTTEEE-HHHHHHHHT-S-EEEEBTTTTBTHHHHHH
T ss_pred CEEEEECCCCCH-HHH-HHHHHHHHH--cCCCEEEEEeCHHHHHHcCCEECHHHHHHHhC-CCEEEEEeCCCcCHHHHHh
Confidence 999999999863 222 233333444 68999999999998755433222233333334 4899999999999999998
Q ss_pred HH
Q 014942 277 WI 278 (415)
Q Consensus 277 ~L 278 (415)
.|
T Consensus 155 ~I 156 (156)
T PF02421_consen 155 AI 156 (156)
T ss_dssp HH
T ss_pred hC
Confidence 75
No 11
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.91 E-value=1.1e-22 Score=199.14 Aligned_cols=207 Identities=21% Similarity=0.289 Sum_probs=157.6
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhh--hhhHhHHHHHHHHh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK--IHMLDSMMMKNVRS 191 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~--~~~l~~~~~~~~~~ 191 (415)
...+|+|+|.||||||||+|+|++.+..++++.+|||++.+...+..++..+.++||+|+.... ...++.+-...+..
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~ 256 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLK 256 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHh
Confidence 4579999999999999999999999999999999999999999999999999999999985321 11222333445667
Q ss_pred hhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCCh--hHHHHHHHH---HhhcCCCccEEEcccC
Q 014942 192 AGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP--GEIAKKLEW---YEKFTDVDEVIPVSAK 266 (415)
Q Consensus 192 ~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~--~~~~~~~~~---~~~~~~~~~i~~vSA~ 266 (415)
++..||++++|+|++.+...++..+..+... .+.++++|+||+|+... ......... ......+.+++++||+
T Consensus 257 aI~~a~vvllviDa~~~~~~qD~~ia~~i~~--~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~iSA~ 334 (444)
T COG1160 257 AIERADVVLLVIDATEGISEQDLRIAGLIEE--AGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFISAL 334 (444)
T ss_pred HHhhcCEEEEEEECCCCchHHHHHHHHHHHH--cCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEEEec
Confidence 7899999999999999999999999988887 89999999999999865 233333333 3334567899999999
Q ss_pred CCCCHHHHHHHHHhhCCCCCCCCCCCCccccCCchhHHHHHHHHHHHHhhcCCCCCceEEEEEEEEEe
Q 014942 267 YGHGVEDIRDWILTKLPLGPAYYPKFQDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKT 334 (415)
Q Consensus 267 ~g~gv~eL~~~L~~~l~~~~~~~~~~~~~~t~~~~~~~i~eiireki~~~~~~eipys~~v~i~~~~~ 334 (415)
+|.|+..|++.+.+.........+ .-.+..++...+..+ .|-+.|.-.+++.....
T Consensus 335 ~~~~i~~l~~~i~~~~~~~~~ri~-----------Ts~LN~~l~~a~~~~-pP~~~~G~r~ki~Ya~q 390 (444)
T COG1160 335 TGQGLDKLFEAIKEIYECATRRIS-----------TSLLNRVLEDAVAKH-PPPVRYGRRLKIKYATQ 390 (444)
T ss_pred CCCChHHHHHHHHHHHHHhccccC-----------HHHHHHHHHHHHHhC-CCCccCCceEEEEEEec
Confidence 999999999999886643221111 123445555555444 55565566666665543
No 12
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.91 E-value=6.6e-24 Score=215.60 Aligned_cols=223 Identities=33% Similarity=0.412 Sum_probs=162.2
Q ss_pred EEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhccc
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~a 196 (415)
+|+++|+||||||||+|+|++...+.++..+++|++.........+..+.+|||||+. .....+...+...+..++..+
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~-~~~~~~~~~~~~~~~~~~~~a 79 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIE-EDDDGLDKQIREQAEIAIEEA 79 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCC-CcchhHHHHHHHHHHHHHhhC
Confidence 4899999999999999999999888889999999999888888888899999999974 233445566777788889999
Q ss_pred ceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHHHHHHHhhcCCCccEEEcccCCCCCHHHHHH
Q 014942 197 DCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRD 276 (415)
Q Consensus 197 D~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gv~eL~~ 276 (415)
|++++|+|+..+....+..+...++. .++|+++|+||+|+....... .+ +. ..++.+++++||++|.|++++++
T Consensus 80 d~vl~vvD~~~~~~~~d~~i~~~l~~--~~~piilVvNK~D~~~~~~~~--~~-~~-~lg~~~~~~vSa~~g~gv~~ll~ 153 (429)
T TIGR03594 80 DVILFVVDGREGLTPEDEEIAKWLRK--SGKPVILVANKIDGKKEDAVA--AE-FY-SLGFGEPIPISAEHGRGIGDLLD 153 (429)
T ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHH--hCCCEEEEEECccCCcccccH--HH-HH-hcCCCCeEEEeCCcCCChHHHHH
Confidence 99999999998888877778777776 689999999999987543221 11 21 23556799999999999999999
Q ss_pred HHHhhCCCCCCCCCCCCccccCCchhHHHHHHHHHHHHhhcCCCCCceEEEEEEEEEe------cCCC-eeEEEEEEEEe
Q 014942 277 WILTKLPLGPAYYPKFQDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKT------RPTA-KDFIQVEIVVE 349 (415)
Q Consensus 277 ~L~~~l~~~~~~~~~~~~~~t~~~~~~~i~eiireki~~~~~~eipys~~v~i~~~~~------~~~~-~~~i~~~~~~~ 349 (415)
++.+.++........ . ..+. ++....++.+|+++.++.+.+.. .+++ ...+. ..++
T Consensus 154 ~i~~~l~~~~~~~~~--~---~~~~----------~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~--~~~~ 216 (429)
T TIGR03594 154 AILELLPEEEEEEEE--E---DGPI----------KIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSID--IPFE 216 (429)
T ss_pred HHHHhcCcccccccc--c---CCce----------EEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEe--EEEE
Confidence 999988753211110 0 0000 12223466666666655443322 1222 22222 3345
Q ss_pred eCCceeEEeecCCh
Q 014942 350 KNSQKIILIGKGGK 363 (415)
Q Consensus 350 r~~q~~iiiG~~g~ 363 (415)
..++...++++.|-
T Consensus 217 ~~~~~~~liDT~G~ 230 (429)
T TIGR03594 217 RNGKKYLLIDTAGI 230 (429)
T ss_pred ECCcEEEEEECCCc
Confidence 56778999999993
No 13
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.90 E-value=2.1e-22 Score=175.97 Aligned_cols=166 Identities=42% Similarity=0.613 Sum_probs=131.3
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~ 193 (415)
++.+|+++|.+|+|||||+|+|++.........+.+++..........+..+.+|||||+.. ........+.......+
T Consensus 2 ~~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~-~~~~~~~~~~~~~~~~~ 80 (168)
T cd04163 2 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHK-PKKKLGERMVKAAWSAL 80 (168)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCc-chHHHHHHHHHHHHHHH
Confidence 45689999999999999999999998877777788888777777777778999999999743 22223333444556668
Q ss_pred cccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCC-ChhHHHHHHHHHhhcCCCccEEEcccCCCCCHH
Q 014942 194 INADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI-KPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVE 272 (415)
Q Consensus 194 ~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~-~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gv~ 272 (415)
..+|++++|+|++++......++.+.+.. .+.|+++|+||+|+. ....+......+....+..+++++|++++.|++
T Consensus 81 ~~~d~i~~v~d~~~~~~~~~~~~~~~~~~--~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 158 (168)
T cd04163 81 KDVDLVLFVVDASEPIGEGDEFILELLKK--SKTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGENVD 158 (168)
T ss_pred HhCCEEEEEEECCCccCchHHHHHHHHHH--hCCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCChH
Confidence 89999999999998765555566665555 568999999999998 455556666666666656789999999999999
Q ss_pred HHHHHHHhhC
Q 014942 273 DIRDWILTKL 282 (415)
Q Consensus 273 eL~~~L~~~l 282 (415)
+++++|.+.+
T Consensus 159 ~l~~~l~~~~ 168 (168)
T cd04163 159 ELLEEIVKYL 168 (168)
T ss_pred HHHHHHHhhC
Confidence 9999998753
No 14
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.90 E-value=2.2e-22 Score=174.88 Aligned_cols=157 Identities=35% Similarity=0.475 Sum_probs=121.1
Q ss_pred EEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhcccce
Q 014942 119 AVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADC 198 (415)
Q Consensus 119 ~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD~ 198 (415)
+++|.+|||||||+|+|++.+....+..+++|+..........+..+.+|||||+.... ..+...+...+...+..+|+
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~-~~~~~~~~~~~~~~~~~~d~ 79 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDD-EGISKEIREQAELAIEEADV 79 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCch-hHHHHHHHHHHHHHHHhCCE
Confidence 57999999999999999998876677888899887777777778899999999974322 12444455556667889999
Q ss_pred EEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHHHHHHHhhcCCCccEEEcccCCCCCHHHHHHHH
Q 014942 199 IVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWI 278 (415)
Q Consensus 199 ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gv~eL~~~L 278 (415)
+++|+|+.++.......+...++. .+.|+++|+||+|+...... ...+.. .+..+++++||++|.|+++++++|
T Consensus 80 ii~v~d~~~~~~~~~~~~~~~~~~--~~~piiiv~nK~D~~~~~~~---~~~~~~-~~~~~~~~~Sa~~~~gv~~l~~~l 153 (157)
T cd01894 80 ILFVVDGREGLTPADEEIAKYLRK--SKKPVILVVNKVDNIKEEDE---AAEFYS-LGFGEPIPISAEHGRGIGDLLDAI 153 (157)
T ss_pred EEEEEeccccCCccHHHHHHHHHh--cCCCEEEEEECcccCChHHH---HHHHHh-cCCCCeEEEecccCCCHHHHHHHH
Confidence 999999987765555556666655 57999999999999875443 122222 234478999999999999999999
Q ss_pred HhhC
Q 014942 279 LTKL 282 (415)
Q Consensus 279 ~~~l 282 (415)
.+.+
T Consensus 154 ~~~~ 157 (157)
T cd01894 154 LELL 157 (157)
T ss_pred HhhC
Confidence 8753
No 15
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.90 E-value=7e-23 Score=219.31 Aligned_cols=227 Identities=26% Similarity=0.352 Sum_probs=166.7
Q ss_pred ccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhc
Q 014942 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (415)
.++|+|+|+||||||||+|+|++....+++..+++|++.......+.+..+.+|||||+. .....+...+...+..++.
T Consensus 275 ~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~-~~~~~~~~~~~~~~~~~~~ 353 (712)
T PRK09518 275 VGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWE-ADVEGIDSAIASQAQIAVS 353 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcC-CCCccHHHHHHHHHHHHHH
Confidence 458999999999999999999999888889999999999888888888899999999974 2233456667777788899
Q ss_pred ccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHHHHHHHhhcCCCccEEEcccCCCCCHHHH
Q 014942 195 NADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDI 274 (415)
Q Consensus 195 ~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gv~eL 274 (415)
.||++|||+|++++....+..+...++. .++|+++|+||+|+...... ....+. .++..++++||++|.||++|
T Consensus 354 ~aD~iL~VvDa~~~~~~~d~~i~~~Lr~--~~~pvIlV~NK~D~~~~~~~--~~~~~~--lg~~~~~~iSA~~g~GI~eL 427 (712)
T PRK09518 354 LADAVVFVVDGQVGLTSTDERIVRMLRR--AGKPVVLAVNKIDDQASEYD--AAEFWK--LGLGEPYPISAMHGRGVGDL 427 (712)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHHh--cCCCEEEEEECcccccchhh--HHHHHH--cCCCCeEEEECCCCCCchHH
Confidence 9999999999998887777777777776 78999999999998653221 122222 23445789999999999999
Q ss_pred HHHHHhhCCCCCCCCCCCCccccCCchhHHHHHHHHHHHHhhcCCCCCceEEEEEEEEEec------CC-CeeEEEEEEE
Q 014942 275 RDWILTKLPLGPAYYPKFQDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTR------PT-AKDFIQVEIV 347 (415)
Q Consensus 275 ~~~L~~~l~~~~~~~~~~~~~~t~~~~~~~i~eiireki~~~~~~eipys~~v~i~~~~~~------~~-~~~~i~~~~~ 347 (415)
+++|.+.++...... ..++.... -++....++++|+++.++.+.+..+ ++ +...+. ..
T Consensus 428 l~~i~~~l~~~~~~~----~a~~~~~~---------~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~--~~ 492 (712)
T PRK09518 428 LDEALDSLKVAEKTS----GFLTPSGL---------RRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVD--EI 492 (712)
T ss_pred HHHHHHhcccccccc----cccCCCCC---------cEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcce--eE
Confidence 999999987532110 00001100 1333456888888888775554432 23 333333 23
Q ss_pred EeeCCceeEEeecCCh
Q 014942 348 VEKNSQKIILIGKGGK 363 (415)
Q Consensus 348 ~~r~~q~~iiiG~~g~ 363 (415)
+...++...+++++|-
T Consensus 493 ~~~~~~~~~liDTaG~ 508 (712)
T PRK09518 493 VEIDGEDWLFIDTAGI 508 (712)
T ss_pred EEECCCEEEEEECCCc
Confidence 4457778889999993
No 16
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.89 E-value=8.5e-23 Score=207.84 Aligned_cols=223 Identities=31% Similarity=0.406 Sum_probs=158.7
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhcc
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (415)
++|+++|.+|||||||+|+|++.....+...+++|++.........+..+.+|||||+.. ....+...+...+..++..
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~-~~~~~~~~~~~~~~~~~~~ 80 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEP-DDDGFEKQIREQAELAIEE 80 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCC-cchhHHHHHHHHHHHHHHh
Confidence 489999999999999999999998878889999999988888888889999999999753 2222444455666777899
Q ss_pred cceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHHHHHHHhhcCCCccEEEcccCCCCCHHHHH
Q 014942 196 ADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIR 275 (415)
Q Consensus 196 aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gv~eL~ 275 (415)
+|++|+|+|++++....+..+...++. .+.|+++|+||+|+..... ...+.+ ..++..++++||++|.|+++++
T Consensus 81 ad~il~vvd~~~~~~~~~~~~~~~l~~--~~~piilv~NK~D~~~~~~--~~~~~~--~lg~~~~~~iSa~~g~gv~~l~ 154 (435)
T PRK00093 81 ADVILFVVDGRAGLTPADEEIAKILRK--SNKPVILVVNKVDGPDEEA--DAYEFY--SLGLGEPYPISAEHGRGIGDLL 154 (435)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHH--cCCcEEEEEECccCccchh--hHHHHH--hcCCCCCEEEEeeCCCCHHHHH
Confidence 999999999998887777777777776 6899999999999764221 111222 2244468999999999999999
Q ss_pred HHHHhhCCCCCCCCCCCCccccCCchhHHHHHHHHHHHHhhcCCCCCceEEEEEEEEEe------cCC-CeeEEEEEEEE
Q 014942 276 DWILTKLPLGPAYYPKFQDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKT------RPT-AKDFIQVEIVV 348 (415)
Q Consensus 276 ~~L~~~l~~~~~~~~~~~~~~t~~~~~~~i~eiireki~~~~~~eipys~~v~i~~~~~------~~~-~~~~i~~~~~~ 348 (415)
+.|....+..... .. ....+ ++....++++|+|+.++.+.+.. .++ +...+ ...+
T Consensus 155 ~~I~~~~~~~~~~-----~~---~~~~~--------~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~--~~~~ 216 (435)
T PRK00093 155 DAILEELPEEEEE-----DE---EDEPI--------KIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSI--DTPF 216 (435)
T ss_pred HHHHhhCCccccc-----cc---cccce--------EEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEE--EEEE
Confidence 9999854432110 00 00011 22233477777777766544332 123 22333 2445
Q ss_pred eeCCceeEEeecCCh
Q 014942 349 EKNSQKIILIGKGGK 363 (415)
Q Consensus 349 ~r~~q~~iiiG~~g~ 363 (415)
...++.+.++++.|-
T Consensus 217 ~~~~~~~~lvDT~G~ 231 (435)
T PRK00093 217 ERDGQKYTLIDTAGI 231 (435)
T ss_pred EECCeeEEEEECCCC
Confidence 567888999999993
No 17
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.89 E-value=5e-22 Score=175.26 Aligned_cols=163 Identities=23% Similarity=0.355 Sum_probs=109.4
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHH-HHHHhhhc
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMM-KNVRSAGI 194 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~-~~~~~~~~ 194 (415)
++|+++|++|||||||+|+|.+..+. +...+++|...........+..+.+|||||+....... ...+. ........
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~-~~~~~~~~~~~~~~ 78 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPE-VAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEE-RNTIEMQAITALAH 78 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCc-cCCCCCcccceeEEEEccCceEEEEEECCCcCCccccC-CchHHHHHHHHHHh
Confidence 47999999999999999999998764 45567777766666666677899999999973211100 00000 11111123
Q ss_pred ccceEEEEecCCCCCc---hHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHHHHHHHhhcCCCccEEEcccCCCCCH
Q 014942 195 NADCIVVLVDACKAPE---RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGV 271 (415)
Q Consensus 195 ~aD~ii~VvD~~~~~~---~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gv 271 (415)
.+|++|+|+|+++... .....+...+.....+.|+++|+||+|+.....+.. ...+... ...+++++||++|.|+
T Consensus 79 ~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~-~~~~~~~-~~~~~~~~Sa~~~~gi 156 (168)
T cd01897 79 LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFEDLSE-IEEEEEL-EGEEVLKISTLTEEGV 156 (168)
T ss_pred ccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCchhhHHH-HHHhhhh-ccCceEEEEecccCCH
Confidence 4689999999986532 111223333333224799999999999986655443 2222222 3457999999999999
Q ss_pred HHHHHHHHhhC
Q 014942 272 EDIRDWILTKL 282 (415)
Q Consensus 272 ~eL~~~L~~~l 282 (415)
++++++|.+.+
T Consensus 157 ~~l~~~l~~~~ 167 (168)
T cd01897 157 DEVKNKACELL 167 (168)
T ss_pred HHHHHHHHHHh
Confidence 99999998765
No 18
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.89 E-value=1.2e-21 Score=181.10 Aligned_cols=193 Identities=16% Similarity=0.171 Sum_probs=129.6
Q ss_pred CCccEEEEEecCCCCHHHHHHHHhCCceee-eeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHh
Q 014942 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSI-VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (415)
Q Consensus 113 ~~~~~V~ivG~~~vGKSSLln~l~~~~~~~-~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~ 191 (415)
....+|+++|.+|||||||+++++...+.. ..+..+.+..............+.+|||||. +.+..+ +..
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~-------~~~ 81 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ--EKFGGL-------RDG 81 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCc--hhhhhh-------hHH
Confidence 455699999999999999999998776532 2223333333322223345578999999994 444333 334
Q ss_pred hhcccceEEEEecCCCCC--chHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHHHHHHHhhcCCCccEEEcccCCCC
Q 014942 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGH 269 (415)
Q Consensus 192 ~~~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~ 269 (415)
+++.+|++|+|+|.++.. .....|+..+.+. ..+.|+++|+||+|+........... +... ...++++|||++|.
T Consensus 82 ~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~-~~~~piilvgNK~Dl~~~~v~~~~~~-~~~~-~~~~~~e~SAk~~~ 158 (219)
T PLN03071 82 YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKNRQVKAKQVT-FHRK-KNLQYYEISAKSNY 158 (219)
T ss_pred HcccccEEEEEEeCCCHHHHHHHHHHHHHHHHh-CCCCcEEEEEEchhhhhccCCHHHHH-HHHh-cCCEEEEcCCCCCC
Confidence 578999999999998754 3344454444332 36799999999999864321122222 2222 23479999999999
Q ss_pred CHHHHHHHHHhhCC--------CCCCCCCCCCccccCCchhHHHHHHHHHHHHhhcCC
Q 014942 270 GVEDIRDWILTKLP--------LGPAYYPKFQDIVSEHPERFFVGEIIREKIFMQYRN 319 (415)
Q Consensus 270 gv~eL~~~L~~~l~--------~~~~~~~~~~~~~t~~~~~~~i~eiireki~~~~~~ 319 (415)
|++++|.+|++.+. ++++.++. ....+.+......+.+++.....+..
T Consensus 159 ~i~~~f~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (219)
T PLN03071 159 NFEKPFLYLARKLAGDPNLHFVESPALAPP--EVQIDLAAQQQHEAELAAAAAQPLPD 214 (219)
T ss_pred CHHHHHHHHHHHHHcCcchhcccccccCCc--ccCCCHHHHHHHHHHHHHHHhcCCCC
Confidence 99999999998664 45666666 66677777666777777776554433
No 19
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.88 E-value=4.3e-22 Score=175.90 Aligned_cols=163 Identities=25% Similarity=0.263 Sum_probs=112.5
Q ss_pred EEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCe-eEEEEeCCCCchhhhhhHhHHHHHHHHhhhcc
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEY-QMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~-~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (415)
.|+++|++|||||||+|+|.+... .++..+++|.....+.+...+. .+.+|||||+...... ...+...+...+..
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~-~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~--~~~~~~~~~~~~~~ 78 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKP-KIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASE--GKGLGHRFLRHIER 78 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCc-cccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccc--cCCchHHHHHHHHh
Confidence 589999999999999999998765 3567777887776666666665 9999999997421111 01112223344568
Q ss_pred cceEEEEecCCCCC---chHHHHHHHHhccc--CCCCCEEEEEeCCCCCChhHHHHHHHHHhhcCCCccEEEcccCCCCC
Q 014942 196 ADCIVVLVDACKAP---ERIDEILEEGVGDH--KDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHG 270 (415)
Q Consensus 196 aD~ii~VvD~~~~~---~~~~~~l~~~l~~~--~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~g 270 (415)
+|++++|+|++++. .....+...+.... ..++|+++|+||+|+.+..........+.......+++++||++|.|
T Consensus 79 ~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 158 (170)
T cd01898 79 TRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLKELWGKPVFPISALTGEG 158 (170)
T ss_pred CCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHhhCCCCCEEEEecCCCCC
Confidence 99999999998761 23333332222211 13689999999999976555444443333322245799999999999
Q ss_pred HHHHHHHHHhhC
Q 014942 271 VEDIRDWILTKL 282 (415)
Q Consensus 271 v~eL~~~L~~~l 282 (415)
+++++++|.+.+
T Consensus 159 i~~l~~~i~~~~ 170 (170)
T cd01898 159 LDELLRKLAELL 170 (170)
T ss_pred HHHHHHHHHhhC
Confidence 999999998753
No 20
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=2.8e-22 Score=173.99 Aligned_cols=163 Identities=23% Similarity=0.266 Sum_probs=121.8
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeee-eCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIV-TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~-~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~ 192 (415)
+..||+++|..|||||||+-++....|... .++.|.........+....+++.+|||+| +++++++..+ |
T Consensus 4 ~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAG--QERy~slapM-------Y 74 (200)
T KOG0092|consen 4 REFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAG--QERYHSLAPM-------Y 74 (200)
T ss_pred ceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCC--cccccccccc-------e
Confidence 456999999999999999999999888642 23333333333333444457899999999 6777777544 4
Q ss_pred hcccceEEEEecCCCCC--chHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHH-HHHHHhhcCCCccEEEcccCCCC
Q 014942 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK-KLEWYEKFTDVDEVIPVSAKYGH 269 (415)
Q Consensus 193 ~~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~-~~~~~~~~~~~~~i~~vSA~~g~ 269 (415)
+++|+++|+|+|+++.. .....|+.++.+...+++-+.||+||+||...+.+.. ....+....+ ..+|++||++|.
T Consensus 75 yRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~g-ll~~ETSAKTg~ 153 (200)
T KOG0092|consen 75 YRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQG-LLFFETSAKTGE 153 (200)
T ss_pred ecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcC-CEEEEEeccccc
Confidence 89999999999998643 6777888888777555666778999999987444321 2223333333 479999999999
Q ss_pred CHHHHHHHHHhhCCCCC
Q 014942 270 GVEDIRDWILTKLPLGP 286 (415)
Q Consensus 270 gv~eL~~~L~~~l~~~~ 286 (415)
||+++|..|.+.+|...
T Consensus 154 Nv~~if~~Ia~~lp~~~ 170 (200)
T KOG0092|consen 154 NVNEIFQAIAEKLPCSD 170 (200)
T ss_pred CHHHHHHHHHHhccCcc
Confidence 99999999999998754
No 21
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.88 E-value=1.1e-20 Score=193.59 Aligned_cols=169 Identities=24% Similarity=0.237 Sum_probs=125.6
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHH--HHHh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMK--NVRS 191 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~--~~~~ 191 (415)
...+|+++|.||||||||+|+|++.....++..+++|++.....+...+..+.+|||||+...........+.. ....
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~ 289 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHA 289 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHHH
Confidence 45799999999999999999999998777889999999888777777788899999999742211111111111 2234
Q ss_pred hhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHHHHHHHh---hcCCCccEEEcccCCC
Q 014942 192 AGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYE---KFTDVDEVIPVSAKYG 268 (415)
Q Consensus 192 ~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~---~~~~~~~i~~vSA~~g 268 (415)
+++.+|++|+|+|++++....+..+...+.. .++|+|+|+||+|+............+. ....+.+++++||++|
T Consensus 290 ~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~--~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SAk~g 367 (472)
T PRK03003 290 AIEAAEVAVVLIDASEPISEQDQRVLSMVIE--AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISAKTG 367 (472)
T ss_pred HHhcCCEEEEEEeCCCCCCHHHHHHHHHHHH--cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEECCCC
Confidence 5789999999999998876666555555544 6899999999999975432221111221 1224568999999999
Q ss_pred CCHHHHHHHHHhhCCC
Q 014942 269 HGVEDIRDWILTKLPL 284 (415)
Q Consensus 269 ~gv~eL~~~L~~~l~~ 284 (415)
.|++++++.+.+.+..
T Consensus 368 ~gv~~lf~~i~~~~~~ 383 (472)
T PRK03003 368 RAVDKLVPALETALES 383 (472)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999988764
No 22
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.88 E-value=1.6e-22 Score=205.46 Aligned_cols=157 Identities=30% Similarity=0.378 Sum_probs=123.3
Q ss_pred ccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhc
Q 014942 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (415)
..+|+++|.||||||||+|+|++.+...+++.+++|++.....+..++..+.+|||||+. .....+.......+..++.
T Consensus 215 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~-~~~~~ie~~gi~~~~~~~~ 293 (449)
T PRK05291 215 GLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIR-ETDDEVEKIGIERSREAIE 293 (449)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCC-CCccHHHHHHHHHHHHHHH
Confidence 358999999999999999999999887789999999998888778788899999999974 2333344444455667789
Q ss_pred ccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHHHHHHHhhcCCCccEEEcccCCCCCHHHH
Q 014942 195 NADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDI 274 (415)
Q Consensus 195 ~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gv~eL 274 (415)
.+|++++|+|++++.......++.. . .+.|+++|+||+|+....... .....+++++||++|.|+++|
T Consensus 294 ~aD~il~VvD~s~~~s~~~~~~l~~--~--~~~piiiV~NK~DL~~~~~~~--------~~~~~~~i~iSAktg~GI~~L 361 (449)
T PRK05291 294 EADLVLLVLDASEPLTEEDDEILEE--L--KDKPVIVVLNKADLTGEIDLE--------EENGKPVIRISAKTGEGIDEL 361 (449)
T ss_pred hCCEEEEEecCCCCCChhHHHHHHh--c--CCCCcEEEEEhhhccccchhh--------hccCCceEEEEeeCCCCHHHH
Confidence 9999999999987764333322222 2 678999999999997543322 112347899999999999999
Q ss_pred HHHHHhhCCC
Q 014942 275 RDWILTKLPL 284 (415)
Q Consensus 275 ~~~L~~~l~~ 284 (415)
+++|.+.+..
T Consensus 362 ~~~L~~~l~~ 371 (449)
T PRK05291 362 REAIKELAFG 371 (449)
T ss_pred HHHHHHHHhh
Confidence 9999998864
No 23
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.88 E-value=2.7e-20 Score=189.45 Aligned_cols=168 Identities=25% Similarity=0.319 Sum_probs=131.5
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhh--hhHhHHHHHHHHh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI--HMLDSMMMKNVRS 191 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~--~~l~~~~~~~~~~ 191 (415)
...+|+++|++|+|||||+|+|++.....++..+++|++.+...+...+..+.+|||||+..... ..+..........
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~ 251 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLK 251 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHH
Confidence 45699999999999999999999998888899999999988777777888999999999743211 1223333344556
Q ss_pred hhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHHHHHHHhh---cCCCccEEEcccCCC
Q 014942 192 AGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVSAKYG 268 (415)
Q Consensus 192 ~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~---~~~~~~i~~vSA~~g 268 (415)
++..+|++|+|+|++.+....+..+...+.. .+.|+++|+||+|+............+.. .....+++++||++|
T Consensus 252 ~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~--~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~SA~~~ 329 (435)
T PRK00093 252 AIERADVVLLVIDATEGITEQDLRIAGLALE--AGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFISALTG 329 (435)
T ss_pred HHHHCCEEEEEEeCCCCCCHHHHHHHHHHHH--cCCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEEEEeCCCC
Confidence 7889999999999999887777777766655 67999999999999865444333333332 234568999999999
Q ss_pred CCHHHHHHHHHhhCC
Q 014942 269 HGVEDIRDWILTKLP 283 (415)
Q Consensus 269 ~gv~eL~~~L~~~l~ 283 (415)
.|++++++.+.+...
T Consensus 330 ~gv~~l~~~i~~~~~ 344 (435)
T PRK00093 330 QGVDKLLEAIDEAYE 344 (435)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999987654
No 24
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.88 E-value=3.5e-21 Score=169.72 Aligned_cols=165 Identities=25% Similarity=0.305 Sum_probs=120.2
Q ss_pred ccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhh--hhhHhHHHHHHHHhh
Q 014942 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK--IHMLDSMMMKNVRSA 192 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~--~~~l~~~~~~~~~~~ 192 (415)
..+|+++|.+|+|||||+|+|++.........+++|+......+...+..+.+|||||+.... ...+...........
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~ 81 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKA 81 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHHH
Confidence 358999999999999999999998876677788888877666666677789999999974321 011111111233455
Q ss_pred hcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCCh--hHHHHHHHHHhhcC---CCccEEEcccCC
Q 014942 193 GINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP--GEIAKKLEWYEKFT---DVDEVIPVSAKY 267 (415)
Q Consensus 193 ~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~--~~~~~~~~~~~~~~---~~~~i~~vSA~~ 267 (415)
+..+|++++|+|++++.......+...... .+.|+++|+||+|+... .......+.+.... ...+++++||++
T Consensus 82 ~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~--~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 159 (174)
T cd01895 82 IERADVVLLVIDATEGITEQDLRIAGLILE--EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFISALT 159 (174)
T ss_pred HhhcCeEEEEEeCCCCcchhHHHHHHHHHh--cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEeccC
Confidence 789999999999988765555444444444 57899999999999765 33444344444332 246899999999
Q ss_pred CCCHHHHHHHHHhh
Q 014942 268 GHGVEDIRDWILTK 281 (415)
Q Consensus 268 g~gv~eL~~~L~~~ 281 (415)
|.|++++++++.+.
T Consensus 160 ~~~i~~~~~~l~~~ 173 (174)
T cd01895 160 GQGVDKLFDAIDEV 173 (174)
T ss_pred CCCHHHHHHHHHHh
Confidence 99999999998764
No 25
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.87 E-value=2.1e-21 Score=190.96 Aligned_cols=158 Identities=28% Similarity=0.320 Sum_probs=114.7
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeC-CCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhc
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG-PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~-~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (415)
++|+++|.||||||||+|+|++.. ..+++.+++|+++....+.. ++..+.+|||||+.......+...+ +.+...+.
T Consensus 190 ~~ValvG~~NvGKSSLln~L~~~~-~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f-~~tle~~~ 267 (351)
T TIGR03156 190 PTVALVGYTNAGKSTLFNALTGAD-VYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAF-RATLEEVR 267 (351)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc-eeeccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHH-HHHHHHHH
Confidence 689999999999999999999988 45788889998887776665 5679999999998433222332333 23445688
Q ss_pred ccceEEEEecCCCCCchH-HHHHHHHhcccC-CCCCEEEEEeCCCCCChhHHHHHHHHHhhcCCCccEEEcccCCCCCHH
Q 014942 195 NADCIVVLVDACKAPERI-DEILEEGVGDHK-DKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVE 272 (415)
Q Consensus 195 ~aD~ii~VvD~~~~~~~~-~~~l~~~l~~~~-~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gv~ 272 (415)
+||++++|+|++++.... ...+...+.... .+.|+++|+||+|+.....+.. ... ...+++++||++|.|++
T Consensus 268 ~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~v~~----~~~--~~~~~i~iSAktg~GI~ 341 (351)
T TIGR03156 268 EADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEPRIER----LEE--GYPEAVFVSAKTGEGLD 341 (351)
T ss_pred hCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChHhHHH----HHh--CCCCEEEEEccCCCCHH
Confidence 999999999998765322 222223333221 4789999999999976443321 111 22368999999999999
Q ss_pred HHHHHHHhh
Q 014942 273 DIRDWILTK 281 (415)
Q Consensus 273 eL~~~L~~~ 281 (415)
+|+++|.+.
T Consensus 342 eL~~~I~~~ 350 (351)
T TIGR03156 342 LLLEAIAER 350 (351)
T ss_pred HHHHHHHhh
Confidence 999999765
No 26
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.87 E-value=3e-21 Score=196.13 Aligned_cols=169 Identities=25% Similarity=0.286 Sum_probs=131.0
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhh--hhHhHHHHHHHHh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI--HMLDSMMMKNVRS 191 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~--~~l~~~~~~~~~~ 191 (415)
+..+|+++|.+|+|||||+|+|++.....++..++||++.....+...+..+.+|||||+..... ..+..........
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~ 250 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLK 250 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHH
Confidence 34689999999999999999999998877889999999988777777777999999999743211 1123333344556
Q ss_pred hhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCC-ChhHHHHHHHHHhhc---CCCccEEEcccCC
Q 014942 192 AGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI-KPGEIAKKLEWYEKF---TDVDEVIPVSAKY 267 (415)
Q Consensus 192 ~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~-~~~~~~~~~~~~~~~---~~~~~i~~vSA~~ 267 (415)
+++.||++|+|+|++++....+..+...+.. .+.|+++|+||+|+. ...........+... ....+++++||++
T Consensus 251 ~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~--~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~~SA~~ 328 (429)
T TIGR03594 251 AIERADVVLLVLDATEGITEQDLRIAGLILE--AGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFISALT 328 (429)
T ss_pred HHHhCCEEEEEEECCCCccHHHHHHHHHHHH--cCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEEEeCCC
Confidence 7899999999999999887777766666655 679999999999998 443343433333322 2456899999999
Q ss_pred CCCHHHHHHHHHhhCCC
Q 014942 268 GHGVEDIRDWILTKLPL 284 (415)
Q Consensus 268 g~gv~eL~~~L~~~l~~ 284 (415)
|.|++++++++.+....
T Consensus 329 g~~v~~l~~~i~~~~~~ 345 (429)
T TIGR03594 329 GQGVDKLLDAIDEVYEN 345 (429)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999987643
No 27
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.87 E-value=4.3e-21 Score=168.10 Aligned_cols=154 Identities=21% Similarity=0.241 Sum_probs=103.3
Q ss_pred EEEEEecCCCCHHHHHHHHhCCceeee--eCCCCceEEeEEEEEeCC-CeeEEEEeCCCCchhhhhhHhHHHHHHHHhhh
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQKLSIV--TNKPQTTRHRILGICSGP-EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~~~~~~--~~~~~tt~~~~~~~~~~~-~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~ 193 (415)
.|+++|++|||||||+|+|++...... ...+++|.......+... +..+.+|||||. ..+ ...+..++
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~--~~~-------~~~~~~~~ 72 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGH--EKF-------IKNMLAGA 72 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCCh--HHH-------HHHHHhhh
Confidence 589999999999999999997543222 223455655444444444 678999999995 222 23344567
Q ss_pred cccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHH----HHHHHHHhhc-CCCccEEEcccCCC
Q 014942 194 INADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI----AKKLEWYEKF-TDVDEVIPVSAKYG 268 (415)
Q Consensus 194 ~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~----~~~~~~~~~~-~~~~~i~~vSA~~g 268 (415)
..+|++++|+|++++...........+... ...|+++|+||+|+...... .+..+.+... ....+++++||++|
T Consensus 73 ~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~-~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 151 (164)
T cd04171 73 GGIDLVLLVVAADEGIMPQTREHLEILELL-GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTG 151 (164)
T ss_pred hcCCEEEEEEECCCCccHhHHHHHHHHHHh-CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCC
Confidence 899999999999875533333222233321 22499999999999765322 2222333321 12358999999999
Q ss_pred CCHHHHHHHHHh
Q 014942 269 HGVEDIRDWILT 280 (415)
Q Consensus 269 ~gv~eL~~~L~~ 280 (415)
.|++++++.|.+
T Consensus 152 ~~v~~l~~~l~~ 163 (164)
T cd04171 152 EGIEELKEYLDE 163 (164)
T ss_pred cCHHHHHHHHhh
Confidence 999999999864
No 28
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.87 E-value=2.2e-21 Score=171.90 Aligned_cols=159 Identities=16% Similarity=0.191 Sum_probs=110.2
Q ss_pred EEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhccc
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~a 196 (415)
+|+++|.+|||||||+++|.+..+. . . .+|.......+...+..+.+|||||. ..+. ..+..++..+
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~--~-~-~~T~~~~~~~~~~~~~~i~l~Dt~G~--~~~~-------~~~~~~~~~a 67 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFM--Q-P-IPTIGFNVETVEYKNLKFTIWDVGGK--HKLR-------PLWKHYYLNT 67 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCC--C-c-CCcCceeEEEEEECCEEEEEEECCCC--hhcc-------hHHHHHhccC
Confidence 5899999999999999999987543 2 2 22222222334567789999999995 2222 2345567899
Q ss_pred ceEEEEecCCCC--CchHHHHHHHHhccc-CCCCCEEEEEeCCCCCChhHHHHHHHHHhhc----CCCccEEEcccCCCC
Q 014942 197 DCIVVLVDACKA--PERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEKF----TDVDEVIPVSAKYGH 269 (415)
Q Consensus 197 D~ii~VvD~~~~--~~~~~~~l~~~l~~~-~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~----~~~~~i~~vSA~~g~ 269 (415)
|++++|+|+++. ......++...++.. ..+.|+++|+||+|+.......+....+... .....++++||++|.
T Consensus 68 d~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 147 (169)
T cd04158 68 QAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSLHKLCCGRSWYIQGCDARSGM 147 (169)
T ss_pred CEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHhCCccccCCCcEEEEeCcCCCCC
Confidence 999999999875 344555666665432 1458999999999996543333333332211 112367899999999
Q ss_pred CHHHHHHHHHhhCCCCCCC
Q 014942 270 GVEDIRDWILTKLPLGPAY 288 (415)
Q Consensus 270 gv~eL~~~L~~~l~~~~~~ 288 (415)
||+++|++|.+.+.+++++
T Consensus 148 gv~~~f~~l~~~~~~~~~~ 166 (169)
T cd04158 148 GLYEGLDWLSRQLVAAGVL 166 (169)
T ss_pred CHHHHHHHHHHHHhhcccc
Confidence 9999999999998887654
No 29
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=1.8e-21 Score=196.62 Aligned_cols=225 Identities=21% Similarity=0.254 Sum_probs=154.0
Q ss_pred CCCCCCccEEEEEecCCCCHHHHHHHHhCCceee-----eeCCCCceEEeEEEE------------EeCCCeeEEEEeCC
Q 014942 109 SHPNHKSGYVAVLGKPNVGKSTLANQMIGQKLSI-----VTNKPQTTRHRILGI------------CSGPEYQMILYDTP 171 (415)
Q Consensus 109 ~~~~~~~~~V~ivG~~~vGKSSLln~l~~~~~~~-----~~~~~~tt~~~~~~~------------~~~~~~~l~liDtp 171 (415)
...+.|+|.|||+|+..+|||-|+..|.+.++.. .+...|.|..+...+ ....-..+.+||||
T Consensus 469 ~~~~lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtp 548 (1064)
T KOG1144|consen 469 STENLRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTP 548 (1064)
T ss_pred cchhcCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCC
Confidence 4557899999999999999999999999887652 223333343332211 01122368999999
Q ss_pred CCchhhhhhHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCCh------hHHH
Q 014942 172 GIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP------GEIA 245 (415)
Q Consensus 172 G~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~------~~~~ 245 (415)
| +++|.+++.++ ...||++|+|+|++++++++.....++++. ++.|+||++||+|++.. ..+.
T Consensus 549 g--hEsFtnlRsrg-------sslC~~aIlvvdImhGlepqtiESi~lLR~--rktpFivALNKiDRLYgwk~~p~~~i~ 617 (1064)
T KOG1144|consen 549 G--HESFTNLRSRG-------SSLCDLAILVVDIMHGLEPQTIESINLLRM--RKTPFIVALNKIDRLYGWKSCPNAPIV 617 (1064)
T ss_pred C--chhhhhhhhcc-------ccccceEEEEeehhccCCcchhHHHHHHHh--cCCCeEEeehhhhhhcccccCCCchHH
Confidence 9 68888887776 679999999999999999999888999998 89999999999998521 1111
Q ss_pred ------------H-------HHHHHhh-------------cCCCccEEEcccCCCCCHHHHHHHHHhhCCCCCCCCCCCC
Q 014942 246 ------------K-------KLEWYEK-------------FTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKFQ 293 (415)
Q Consensus 246 ------------~-------~~~~~~~-------------~~~~~~i~~vSA~~g~gv~eL~~~L~~~l~~~~~~~~~~~ 293 (415)
+ +...+.. ...+..++|+||.+|+||.+|+-+|++..+..
T Consensus 618 ~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~-------- 689 (1064)
T KOG1144|consen 618 EALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKT-------- 689 (1064)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHH--------
Confidence 1 1111111 22345789999999999999999999876531
Q ss_pred ccccCCchhHHHHHHHHHHHHhhcCCCCCceEEEEEEEEEecCCCeeEEEEEEEEeeCCceeEEeecCChHHHHHHHH
Q 014942 294 DIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTRPTAKDFIQVEIVVEKNSQKIILIGKGGKALKLLATA 371 (415)
Q Consensus 294 ~~~t~~~~~~~i~eiireki~~~~~~eipys~~v~i~~~~~~~~~~~~i~~~~~~~r~~q~~iiiG~~g~~i~~i~~~ 371 (415)
++. ++. +-.++ -++.+.|-...-...|.+.|.... ..++|...++||.+|..+++|++.
T Consensus 690 ----------m~~-----kl~--y~~ev-~cTVlEVKvieG~GtTIDViLvNG-~L~eGD~IvvcG~~GpIvTtIRaL 748 (1064)
T KOG1144|consen 690 ----------MVE-----KLA--YVDEV-QCTVLEVKVIEGHGTTIDVILVNG-ELHEGDQIVVCGLQGPIVTTIRAL 748 (1064)
T ss_pred ----------HHH-----HHh--hhhhe-eeEEEEEEeecCCCceEEEEEEcc-eeccCCEEEEcCCCCchhHHHHHh
Confidence 111 111 01111 133333322222222344454443 668999999999999999999875
No 30
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.87 E-value=2e-21 Score=175.74 Aligned_cols=164 Identities=21% Similarity=0.190 Sum_probs=110.5
Q ss_pred EEEEEecCCCCHHHHHHHHhCCceeeeeCCCCce-EEeEEE--EEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhh
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTT-RHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt-~~~~~~--~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~ 193 (415)
+|+++|.+|||||||+++|.+..+.. ...+.|+ .+.... .+......+.+||||| +..+..+ ...++
T Consensus 2 Ki~vvG~~~vGKTSli~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G--~~~~~~~-------~~~~~ 71 (191)
T cd04112 2 KVMLLGDSGVGKTCLLVRFKDGAFLN-GNFIATVGIDFRNKVVTVDGVKVKLQIWDTAG--QERFRSV-------THAYY 71 (191)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCc-cCcCCcccceeEEEEEEECCEEEEEEEEeCCC--cHHHHHh-------hHHHc
Confidence 79999999999999999999887642 2222232 222221 2333456899999999 4333322 34457
Q ss_pred cccceEEEEecCCCCC--chHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHH-HHHHHHHhhcCCCccEEEcccCCCCC
Q 014942 194 INADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGHG 270 (415)
Q Consensus 194 ~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g~g 270 (415)
+.+|++|+|+|+++.. .....|+..+......+.|+++|+||+|+.....+ ......+....+ .+++++||++|.|
T Consensus 72 ~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~-~~~~e~Sa~~~~~ 150 (191)
T cd04112 72 RDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYG-VPFMETSAKTGLN 150 (191)
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcC-CeEEEEeCCCCCC
Confidence 8999999999998653 23334444333332357899999999999643221 112222222223 4899999999999
Q ss_pred HHHHHHHHHhhCCCCCCCCCC
Q 014942 271 VEDIRDWILTKLPLGPAYYPK 291 (415)
Q Consensus 271 v~eL~~~L~~~l~~~~~~~~~ 291 (415)
+++++++|.+.+...++.+|.
T Consensus 151 v~~l~~~l~~~~~~~~~~~~~ 171 (191)
T cd04112 151 VELAFTAVAKELKHRKYEQPD 171 (191)
T ss_pred HHHHHHHHHHHHHHhccccCC
Confidence 999999999999887766655
No 31
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.87 E-value=4e-21 Score=170.26 Aligned_cols=154 Identities=19% Similarity=0.185 Sum_probs=104.5
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~ 193 (415)
+..+|+++|.+|||||||+++|....+... .|.+..+. ......+..+.+|||||. ..+..+ +..++
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~~~--~~t~g~~~--~~~~~~~~~~~l~Dt~G~--~~~~~~-------~~~~~ 74 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSVTT--IPTVGFNV--ETVTYKNVKFNVWDVGGQ--DKIRPL-------WRHYY 74 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCccc--cCCcccce--EEEEECCEEEEEEECCCC--HHHHHH-------HHHHh
Confidence 346899999999999999999987665322 22222221 123346789999999994 333322 44568
Q ss_pred cccceEEEEecCCCC--CchHHHHHHHHhccc-CCCCCEEEEEeCCCCCChhHHHHHHHHHhh---cCCCccEEEcccCC
Q 014942 194 INADCIVVLVDACKA--PERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVSAKY 267 (415)
Q Consensus 194 ~~aD~ii~VvD~~~~--~~~~~~~l~~~l~~~-~~~~piilV~NK~Dl~~~~~~~~~~~~~~~---~~~~~~i~~vSA~~ 267 (415)
..||++|+|+|+++. ......++.+.+... ..+.|++||+||+|+.......+....+.. .....+++++||++
T Consensus 75 ~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~ 154 (168)
T cd04149 75 TGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATS 154 (168)
T ss_pred ccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCCCccCCCcEEEEEeeCCC
Confidence 899999999999875 344445555555431 256899999999998643222222232211 11223689999999
Q ss_pred CCCHHHHHHHHHh
Q 014942 268 GHGVEDIRDWILT 280 (415)
Q Consensus 268 g~gv~eL~~~L~~ 280 (415)
|.|+++++++|.+
T Consensus 155 g~gv~~~~~~l~~ 167 (168)
T cd04149 155 GDGLYEGLTWLSS 167 (168)
T ss_pred CCChHHHHHHHhc
Confidence 9999999999975
No 32
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.86 E-value=5e-21 Score=167.54 Aligned_cols=155 Identities=21% Similarity=0.249 Sum_probs=109.1
Q ss_pred EEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCC--eeEEEEeCCCCchhhhhhHhHHHHHHHHhhhc
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (415)
+|+++|++|||||||+++|++.++.. ...+.++.+.....+..++ ..+.+|||||. ..+.. .+...++
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~--~~~~~-------~~~~~~~ 71 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFDN-QYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQ--ERFRS-------LIPSYIR 71 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCc-cCCCceeeeEEEEEEEECCEEEEEEEEECCCc--HHHHH-------HHHHHhc
Confidence 79999999999999999999988753 4455666555554444333 57899999994 33332 2444578
Q ss_pred ccceEEEEecCCCCC--chHHHHHHHHhcccCCCCCEEEEEeCCCCCChhH-HHHHHHHHhhcCCCccEEEcccCCCCCH
Q 014942 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE-IAKKLEWYEKFTDVDEVIPVSAKYGHGV 271 (415)
Q Consensus 195 ~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~i~~vSA~~g~gv 271 (415)
.+|++++|+|++++. .....++.........+.|+++|+||+|+..... .......+....+ .+++++||++|.|+
T Consensus 72 ~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v 150 (161)
T cd01861 72 DSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELN-AMFIETSAKAGHNV 150 (161)
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhC-CEEEEEeCCCCCCH
Confidence 999999999998653 4455555555444223699999999999954322 2222222322223 57999999999999
Q ss_pred HHHHHHHHhhC
Q 014942 272 EDIRDWILTKL 282 (415)
Q Consensus 272 ~eL~~~L~~~l 282 (415)
++++++|.+.+
T Consensus 151 ~~l~~~i~~~l 161 (161)
T cd01861 151 KELFRKIASAL 161 (161)
T ss_pred HHHHHHHHHhC
Confidence 99999998753
No 33
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.86 E-value=9.6e-21 Score=164.36 Aligned_cols=154 Identities=31% Similarity=0.445 Sum_probs=117.3
Q ss_pred EEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhccc
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~a 196 (415)
+|+++|++|+|||||+|+|.+.....+...+++|.......+...+..+.+|||||+.... ..+...........+..+
T Consensus 3 ~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~-~~~~~~~~~~~~~~~~~~ 81 (157)
T cd04164 3 KVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETE-DEIEKIGIERAREAIEEA 81 (157)
T ss_pred EEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCc-chHHHHHHHHHHHHHhhC
Confidence 7999999999999999999999877778888988887766666677899999999974322 222222333455567899
Q ss_pred ceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHHHHHHHhhcCCCccEEEcccCCCCCHHHHHH
Q 014942 197 DCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRD 276 (415)
Q Consensus 197 D~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gv~eL~~ 276 (415)
|++++|+|++++........... . .+.|+++|+||+|+...... .......+++++||+++.|+++|++
T Consensus 82 ~~~v~v~d~~~~~~~~~~~~~~~--~--~~~~vi~v~nK~D~~~~~~~-------~~~~~~~~~~~~Sa~~~~~v~~l~~ 150 (157)
T cd04164 82 DLVLFVIDASRGLDEEDLEILEL--P--ADKPIIVVLNKSDLLPDSEL-------LSLLAGKPIIAISAKTGEGLDELKE 150 (157)
T ss_pred CEEEEEEECCCCCCHHHHHHHHh--h--cCCCEEEEEEchhcCCcccc-------ccccCCCceEEEECCCCCCHHHHHH
Confidence 99999999997665444333332 2 67999999999999865433 1122345899999999999999999
Q ss_pred HHHhhC
Q 014942 277 WILTKL 282 (415)
Q Consensus 277 ~L~~~l 282 (415)
+|.+.+
T Consensus 151 ~l~~~~ 156 (157)
T cd04164 151 ALLELA 156 (157)
T ss_pred HHHHhh
Confidence 998764
No 34
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.86 E-value=6.7e-21 Score=169.37 Aligned_cols=155 Identities=20% Similarity=0.285 Sum_probs=105.7
Q ss_pred CCccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhh
Q 014942 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (415)
Q Consensus 113 ~~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~ 192 (415)
.+..+|+++|++|||||||+++|.+..+..+.+..+.. ...+..++..+.+|||||. ..+.. .+..+
T Consensus 12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~t~g~~----~~~~~~~~~~l~l~D~~G~--~~~~~-------~~~~~ 78 (173)
T cd04154 12 EREMRILILGLDNAGKTTILKKLLGEDIDTISPTLGFQ----IKTLEYEGYKLNIWDVGGQ--KTLRP-------YWRNY 78 (173)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccc----eEEEEECCEEEEEEECCCC--HHHHH-------HHHHH
Confidence 35569999999999999999999987654322222211 1223335678999999994 33222 24456
Q ss_pred hcccceEEEEecCCCCC--chHHHHHHHHhcc-cCCCCCEEEEEeCCCCCChhHHHHHHHHHhh---cCCCccEEEcccC
Q 014942 193 GINADCIVVLVDACKAP--ERIDEILEEGVGD-HKDKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVSAK 266 (415)
Q Consensus 193 ~~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~-~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~---~~~~~~i~~vSA~ 266 (415)
+..+|++++|+|++++. .....++..++.. ...+.|+++|+||+|+.......+....+.. .....+++++||+
T Consensus 79 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 158 (173)
T cd04154 79 FESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELDKISSHHWRIQPCSAV 158 (173)
T ss_pred hCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCccccCCCceEEEeccCC
Confidence 88999999999998753 3333444444332 1257999999999999754333333333321 1234589999999
Q ss_pred CCCCHHHHHHHHHh
Q 014942 267 YGHGVEDIRDWILT 280 (415)
Q Consensus 267 ~g~gv~eL~~~L~~ 280 (415)
+|.|+++++++|.+
T Consensus 159 ~g~gi~~l~~~l~~ 172 (173)
T cd04154 159 TGEGLLQGIDWLVD 172 (173)
T ss_pred CCcCHHHHHHHHhc
Confidence 99999999999864
No 35
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.86 E-value=9.4e-21 Score=166.88 Aligned_cols=158 Identities=19% Similarity=0.183 Sum_probs=105.3
Q ss_pred ccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCC--CeeEEEEeCCCCchhhhhhHhHHHHHHHHhh
Q 014942 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~--~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~ 192 (415)
..+|+++|++|||||||+++|.+..+..... +..+.+.....+... ...+.+|||||. ..+.. .+..+
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~l~i~D~~G~--~~~~~-------~~~~~ 72 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQG-NTIGVDFTMKTLEIEGKRVKLQIWDTAGQ--ERFRT-------ITQSY 72 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCcccCC-CccceEEEEEEEEECCEEEEEEEEECCCh--HHHHH-------HHHHH
Confidence 3589999999999999999999876542211 111112222222223 358899999993 33322 24455
Q ss_pred hcccceEEEEecCCCCC--chHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHH-HHHHHHHhhcCCCccEEEcccCCCC
Q 014942 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGH 269 (415)
Q Consensus 193 ~~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g~ 269 (415)
++.+|++++|+|++++. .....|+.........+.|+++|+||+|+...... ......+.+..+...++++||++|.
T Consensus 73 ~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~ 152 (165)
T cd01864 73 YRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQ 152 (165)
T ss_pred hccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCC
Confidence 78999999999998754 33344554443332357899999999999754321 1222233333444578999999999
Q ss_pred CHHHHHHHHHhhC
Q 014942 270 GVEDIRDWILTKL 282 (415)
Q Consensus 270 gv~eL~~~L~~~l 282 (415)
|+++++++|.+.+
T Consensus 153 ~v~~~~~~l~~~l 165 (165)
T cd01864 153 NVEEAFLLMATEL 165 (165)
T ss_pred CHHHHHHHHHHhC
Confidence 9999999998753
No 36
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.86 E-value=1.6e-21 Score=197.11 Aligned_cols=159 Identities=28% Similarity=0.357 Sum_probs=119.2
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~ 193 (415)
...+|+++|+||||||||+|+|++.....++..|+||++.....+..++..+.+|||||+.. ....+..........++
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~-~~~~ie~~gi~~~~~~~ 280 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIRE-HADFVERLGIEKSFKAI 280 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCccc-chhHHHHHHHHHHHHHH
Confidence 34589999999999999999999988878899999999988888888889999999999742 22333334445566778
Q ss_pred cccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHHHHHHHhhcCCCccEEEcccCCCCCHHH
Q 014942 194 INADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVED 273 (415)
Q Consensus 194 ~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gv~e 273 (415)
+.+|++++|+|++++......++. .+.. .+.|+++|+||+|+... ... .+.... ..+++++||++ .||++
T Consensus 281 ~~aD~il~V~D~s~~~s~~~~~l~-~~~~--~~~piIlV~NK~Dl~~~-~~~----~~~~~~-~~~~~~vSak~-~gI~~ 350 (442)
T TIGR00450 281 KQADLVIYVLDASQPLTKDDFLII-DLNK--SKKPFILVLNKIDLKIN-SLE----FFVSSK-VLNSSNLSAKQ-LKIKA 350 (442)
T ss_pred hhCCEEEEEEECCCCCChhHHHHH-HHhh--CCCCEEEEEECccCCCc-chh----hhhhhc-CCceEEEEEec-CCHHH
Confidence 999999999999877644333333 3333 57899999999999654 211 111111 23689999998 58888
Q ss_pred HHHHHHhhCC
Q 014942 274 IRDWILTKLP 283 (415)
Q Consensus 274 L~~~L~~~l~ 283 (415)
+++.|.+.+.
T Consensus 351 ~~~~L~~~i~ 360 (442)
T TIGR00450 351 LVDLLTQKIN 360 (442)
T ss_pred HHHHHHHHHH
Confidence 8887777553
No 37
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.86 E-value=9.5e-21 Score=172.65 Aligned_cols=157 Identities=18% Similarity=0.207 Sum_probs=106.5
Q ss_pred EEEEEecCCCCHHHHHHHHhCCceeeeeCCCCc-eEEeEEEEEe--CCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhh
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQT-TRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~t-t~~~~~~~~~--~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~ 193 (415)
.|+++|..|||||||++++....+.. .+..| +.+.....+. .....+.+|||+| ++.+..+ +..++
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~~--~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaG--qe~~~~l-------~~~y~ 70 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFCE--ACKSGVGVDFKIKTVELRGKKIRLQIWDTAG--QERFNSI-------TSAYY 70 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCCC--cCCCcceeEEEEEEEEECCEEEEEEEEeCCC--chhhHHH-------HHHHh
Confidence 68999999999999999999887742 22222 2233222233 3347889999999 4444433 44568
Q ss_pred cccceEEEEecCCCCC--chHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHH-HHHHHHhhcCCCccEEEcccCCCCC
Q 014942 194 INADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYGHG 270 (415)
Q Consensus 194 ~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~i~~vSA~~g~g 270 (415)
++||++|+|+|+++.. .....|+..+......+.|+++|+||+|+...+.+. .....+........+++|||++|.|
T Consensus 71 ~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~g 150 (202)
T cd04120 71 RSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFN 150 (202)
T ss_pred cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCC
Confidence 9999999999998754 344444433222222579999999999997543332 1222232222224799999999999
Q ss_pred HHHHHHHHHhhCCC
Q 014942 271 VEDIRDWILTKLPL 284 (415)
Q Consensus 271 v~eL~~~L~~~l~~ 284 (415)
|+++|++|++.+..
T Consensus 151 V~e~F~~l~~~~~~ 164 (202)
T cd04120 151 VDEIFLKLVDDILK 164 (202)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999987643
No 38
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.86 E-value=8.9e-20 Score=195.48 Aligned_cols=169 Identities=22% Similarity=0.239 Sum_probs=127.9
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHH--HHHHh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMM--KNVRS 191 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~--~~~~~ 191 (415)
..++|+++|++|||||||+|+|++.+...++..++||++.....+..++..+.+|||||+...........+. -....
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~ 528 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQA 528 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHHH
Confidence 3479999999999999999999999887788999999998887777788899999999974321111111111 12345
Q ss_pred hhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHHHHHHHhh---cCCCccEEEcccCCC
Q 014942 192 AGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVSAKYG 268 (415)
Q Consensus 192 ~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~---~~~~~~i~~vSA~~g 268 (415)
+++.+|++++|+|++++....+..+...+.. .++|+++|+||+|+.+..........+.. ...+.+++++||++|
T Consensus 529 ~i~~advvilViDat~~~s~~~~~i~~~~~~--~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~ii~iSAktg 606 (712)
T PRK09518 529 AIERSELALFLFDASQPISEQDLKVMSMAVD--AGRALVLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARRVNLSAKTG 606 (712)
T ss_pred HhhcCCEEEEEEECCCCCCHHHHHHHHHHHH--cCCCEEEEEEchhcCChhHHHHHHHHHHHhccCCCCCCEEEEECCCC
Confidence 6789999999999998887666655555544 67999999999999864433322222222 234568899999999
Q ss_pred CCHHHHHHHHHhhCCC
Q 014942 269 HGVEDIRDWILTKLPL 284 (415)
Q Consensus 269 ~gv~eL~~~L~~~l~~ 284 (415)
.|+++|++.+.+.++.
T Consensus 607 ~gv~~L~~~i~~~~~~ 622 (712)
T PRK09518 607 WHTNRLAPAMQEALES 622 (712)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999998764
No 39
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.86 E-value=6.7e-21 Score=173.36 Aligned_cols=166 Identities=20% Similarity=0.237 Sum_probs=105.8
Q ss_pred EEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEE--EeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhc
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~--~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (415)
+|+|+|.+|||||||++++++.++... ..|.++....... +......+.+|||||..... ......+......++.
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~f~~~-~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~-~~~~~e~~~~~~~~~~ 79 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQEFPEE-YIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYP-GTAGQEWMDPRFRGLR 79 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCCCcc-cCCccccccceeEEEECCEEEEEEEEeCCCcccCC-ccchhHHHHHHHhhhc
Confidence 799999999999999999999887532 2333332222222 23333678899999963211 1112222223445578
Q ss_pred ccceEEEEecCCCCC--chHHHHHHHHhccc---CCCCCEEEEEeCCCCCChhHHH-HHHHHHhhcCCCccEEEcccCCC
Q 014942 195 NADCIVVLVDACKAP--ERIDEILEEGVGDH---KDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYG 268 (415)
Q Consensus 195 ~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~---~~~~piilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~i~~vSA~~g 268 (415)
.+|++|+|+|++++. .....++..+.... ..+.|+++|+||+|+...+... .....+.......++++|||++|
T Consensus 80 ~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g 159 (198)
T cd04142 80 NSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYN 159 (198)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCC
Confidence 999999999998754 22333333333221 2578999999999996532221 11222222123458999999999
Q ss_pred CCHHHHHHHHHhhCCC
Q 014942 269 HGVEDIRDWILTKLPL 284 (415)
Q Consensus 269 ~gv~eL~~~L~~~l~~ 284 (415)
.|+++||+.+++.+..
T Consensus 160 ~~v~~lf~~i~~~~~~ 175 (198)
T cd04142 160 WHILLLFKELLISATT 175 (198)
T ss_pred CCHHHHHHHHHHHhhc
Confidence 9999999999976653
No 40
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.86 E-value=5.5e-21 Score=186.52 Aligned_cols=163 Identities=25% Similarity=0.283 Sum_probs=117.6
Q ss_pred EEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeC-CCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhcc
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG-PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~-~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (415)
.|+|+|.||||||||+|+|.+.+.. ++++|.||..+..+.+.. ++.++.+|||||+...... ...+...+...+..
T Consensus 160 dVglVG~PNaGKSTLln~ls~a~~~-va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~--~~gLg~~flrhie~ 236 (335)
T PRK12299 160 DVGLVGLPNAGKSTLISAVSAAKPK-IADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASE--GAGLGHRFLKHIER 236 (335)
T ss_pred CEEEEcCCCCCHHHHHHHHHcCCCc-cCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCc--cccHHHHHHHHhhh
Confidence 7999999999999999999987754 788999999999988876 5568999999998642211 11122334455788
Q ss_pred cceEEEEecCCCCC--chHHHHHHHHhcccC---CCCCEEEEEeCCCCCChhHHHH-HHHHHhhcCCCccEEEcccCCCC
Q 014942 196 ADCIVVLVDACKAP--ERIDEILEEGVGDHK---DKLPILLVLNKKDLIKPGEIAK-KLEWYEKFTDVDEVIPVSAKYGH 269 (415)
Q Consensus 196 aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~---~~~piilV~NK~Dl~~~~~~~~-~~~~~~~~~~~~~i~~vSA~~g~ 269 (415)
++++|+|+|+++.. +....+. ..+.... .++|+++|+||+|+........ ....+.... ..+++++||+++.
T Consensus 237 a~vlI~ViD~s~~~s~e~~~~~~-~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~-~~~i~~iSAktg~ 314 (335)
T PRK12299 237 TRLLLHLVDIEAVDPVEDYKTIR-NELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAAL-GGPVFLISAVTGE 314 (335)
T ss_pred cCEEEEEEcCCCCCCHHHHHHHH-HHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhc-CCCEEEEEcCCCC
Confidence 99999999998643 2332333 3232211 3689999999999976543322 222222222 2479999999999
Q ss_pred CHHHHHHHHHhhCCC
Q 014942 270 GVEDIRDWILTKLPL 284 (415)
Q Consensus 270 gv~eL~~~L~~~l~~ 284 (415)
|+++|+++|.+.+..
T Consensus 315 GI~eL~~~L~~~l~~ 329 (335)
T PRK12299 315 GLDELLRALWELLEE 329 (335)
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999988765
No 41
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.86 E-value=5.8e-21 Score=167.33 Aligned_cols=155 Identities=19% Similarity=0.202 Sum_probs=104.1
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEE--eCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhh
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC--SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~--~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~ 193 (415)
.+|+++|.+|||||||++++++..+. ....+|+.+.....+ ......+.+|||||. +.+..+ ...++
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~-------~~~~~ 70 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFV--EKYDPTIEDSYRKQIEVDGQQCMLEILDTAGT--EQFTAM-------RDLYI 70 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC--cccCCchhhhEEEEEEECCEEEEEEEEECCCc--cccchH-------HHHHh
Confidence 48999999999999999999987764 333444433333223 333456789999994 444433 23347
Q ss_pred cccceEEEEecCCCCC--chHHHHHHHHhccc-CCCCCEEEEEeCCCCCChhHHH-HHHHHHhhcCCCccEEEcccCCCC
Q 014942 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYGH 269 (415)
Q Consensus 194 ~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~-~~~~piilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~i~~vSA~~g~ 269 (415)
+.+|++++|+|.++.. .....++..+.... ..+.|+++|+||+|+.....+. .....+....+ .+++++||++|.
T Consensus 71 ~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 149 (163)
T cd04136 71 KNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWG-CPFYETSAKSKI 149 (163)
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcC-CeEEEecCCCCC
Confidence 8999999999997643 33333333333221 2578999999999996533221 11222323223 589999999999
Q ss_pred CHHHHHHHHHhhC
Q 014942 270 GVEDIRDWILTKL 282 (415)
Q Consensus 270 gv~eL~~~L~~~l 282 (415)
|+++++++|.+.+
T Consensus 150 ~v~~l~~~l~~~~ 162 (163)
T cd04136 150 NVDEVFADLVRQI 162 (163)
T ss_pred CHHHHHHHHHHhc
Confidence 9999999998754
No 42
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.86 E-value=9.2e-21 Score=165.49 Aligned_cols=155 Identities=21% Similarity=0.185 Sum_probs=103.2
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEE--EeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhh
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~--~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~ 193 (415)
.+|+++|.+|||||||+|+|++..+. ....+|+....... +......+.+|||||. +.+..+ +..++
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~l-------~~~~~ 70 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFV--DEYDPTIEDSYRKQVVIDGETCLLDILDTAGQ--EEYSAM-------RDQYM 70 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCc--CCcCCcchheEEEEEEECCEEEEEEEEECCCC--cchHHH-------HHHHH
Confidence 47999999999999999999988764 23334433332222 2233356789999994 344333 33457
Q ss_pred cccceEEEEecCCCCC--chHHHHHHHHhccc-CCCCCEEEEEeCCCCCChhHHHHHHHHHhhcCCCccEEEcccCCCCC
Q 014942 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHG 270 (415)
Q Consensus 194 ~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~-~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~g 270 (415)
+.+|++++|+|.++.. .....++..+.+.. ..+.|+++|+||+|+............+....+ .+++++||++|.|
T Consensus 71 ~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~g 149 (162)
T cd04138 71 RTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLAKSYG-IPYIETSAKTRQG 149 (162)
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHHHHhC-CeEEEecCCCCCC
Confidence 8899999999987643 33334444433321 257899999999999753222222222222222 3799999999999
Q ss_pred HHHHHHHHHhhC
Q 014942 271 VEDIRDWILTKL 282 (415)
Q Consensus 271 v~eL~~~L~~~l 282 (415)
+++++++|.+.+
T Consensus 150 i~~l~~~l~~~~ 161 (162)
T cd04138 150 VEEAFYTLVREI 161 (162)
T ss_pred HHHHHHHHHHHh
Confidence 999999998754
No 43
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.86 E-value=6.9e-21 Score=167.80 Aligned_cols=155 Identities=22% Similarity=0.298 Sum_probs=103.6
Q ss_pred EEEEEecCCCCHHHHHHHHhCCcee---eeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhh
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQKLS---IVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~~~~---~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~ 193 (415)
+|+++|++|||||||+++|.+.... .......+|.......+..++..+.+|||||. ..+. ..+..++
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~--~~~~-------~~~~~~~ 71 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQ--ESLR-------SLWDKYY 71 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCC--hhhH-------HHHHHHh
Confidence 4899999999999999999875321 01122233333333445556789999999995 3322 2344558
Q ss_pred cccceEEEEecCCCCC--chHHHHHHHHhccc-CCCCCEEEEEeCCCCCChhHHHHHHHHHhhcC-----CCccEEEccc
Q 014942 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEKFT-----DVDEVIPVSA 265 (415)
Q Consensus 194 ~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~-~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~-----~~~~i~~vSA 265 (415)
..+|++++|+|+++.. .....++...++.. ..+.|+++|+||+|+............+.... ...+++++||
T Consensus 72 ~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 151 (167)
T cd04160 72 AECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEIGRRDCLVLPVSA 151 (167)
T ss_pred CCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhccccccccCCceEEEEeeC
Confidence 8999999999997643 22333444443321 25799999999999876433333333332211 2247999999
Q ss_pred CCCCCHHHHHHHHHh
Q 014942 266 KYGHGVEDIRDWILT 280 (415)
Q Consensus 266 ~~g~gv~eL~~~L~~ 280 (415)
++|.|+++++++|.+
T Consensus 152 ~~g~gv~e~~~~l~~ 166 (167)
T cd04160 152 LEGTGVREGIEWLVE 166 (167)
T ss_pred CCCcCHHHHHHHHhc
Confidence 999999999999975
No 44
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.86 E-value=5.2e-21 Score=168.04 Aligned_cols=155 Identities=19% Similarity=0.198 Sum_probs=103.1
Q ss_pred EEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEE--EEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhc
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~--~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (415)
+|+++|++|||||||+++|++..+. ....+++.+.... .+......+.+|||||. ..+..+ ...+++
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~--~~~~~~-------~~~~~~ 70 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHFV--DDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQ--EEFSAM-------RDQYMR 70 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCC--cccCCchhhhEEEEEEECCEEEEEEEEECCCc--ccchHH-------HHHHHh
Confidence 7999999999999999999987764 2333333332222 23334467889999994 333333 233478
Q ss_pred ccceEEEEecCCCCC--chHHHHHHHHhccc-CCCCCEEEEEeCCCCCChhHHH-HHHHHHhhcCCCccEEEcccCCCCC
Q 014942 195 NADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYGHG 270 (415)
Q Consensus 195 ~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~-~~~~piilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~i~~vSA~~g~g 270 (415)
.+|++++|+|++++. .....+...+.+.. ..+.|+++|+||+|+.....+. .....+....+ .+++++||++|.|
T Consensus 71 ~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~ 149 (164)
T smart00173 71 TGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWG-CPFLETSAKERVN 149 (164)
T ss_pred hCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcC-CEEEEeecCCCCC
Confidence 899999999998643 23333333322221 1478999999999997533211 12222222223 5899999999999
Q ss_pred HHHHHHHHHhhCC
Q 014942 271 VEDIRDWILTKLP 283 (415)
Q Consensus 271 v~eL~~~L~~~l~ 283 (415)
+++++++|.+.+.
T Consensus 150 i~~l~~~l~~~~~ 162 (164)
T smart00173 150 VDEAFYDLVREIR 162 (164)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998764
No 45
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.86 E-value=8.6e-21 Score=169.29 Aligned_cols=155 Identities=21% Similarity=0.197 Sum_probs=104.2
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEE--EeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhh
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~--~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~ 193 (415)
.+|+++|.+|||||||++++.+..+. ..+.+|........ +......+.+|||||. +.+..+ ...++
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~--~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~-------~~~~~ 70 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFP--SEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ--EDYDRL-------RPLSY 70 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC--CCCCCceeeeeEEEEEECCEEEEEEEEECCCc--cchhhh-------hhhhc
Confidence 47999999999999999999988773 33444443333222 2233467899999994 444333 23357
Q ss_pred cccceEEEEecCCCCC--chHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHH-------------HHHHHHhhcCCCc
Q 014942 194 INADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-------------KKLEWYEKFTDVD 258 (415)
Q Consensus 194 ~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~-------------~~~~~~~~~~~~~ 258 (415)
+.+|++|+|+|.+++. ......+...+.....+.|+++|+||+|+.....+. +....+....+..
T Consensus 71 ~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~ 150 (175)
T cd01874 71 PQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAV 150 (175)
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCc
Confidence 8999999999998754 333332333333323578999999999986532211 1112222233445
Q ss_pred cEEEcccCCCCCHHHHHHHHHhh
Q 014942 259 EVIPVSAKYGHGVEDIRDWILTK 281 (415)
Q Consensus 259 ~i~~vSA~~g~gv~eL~~~L~~~ 281 (415)
.++++||++|.|++++|+.++..
T Consensus 151 ~~~e~SA~tg~~v~~~f~~~~~~ 173 (175)
T cd01874 151 KYVECSALTQKGLKNVFDEAILA 173 (175)
T ss_pred EEEEecCCCCCCHHHHHHHHHHH
Confidence 89999999999999999999874
No 46
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.86 E-value=6.6e-21 Score=168.00 Aligned_cols=157 Identities=13% Similarity=0.145 Sum_probs=103.8
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceE-EeEEE-EEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhh
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTR-HRILG-ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~-~~~~~-~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~ 193 (415)
.+|+++|.+|||||||+++|.+.++... ..+..+. ..... ........+.+|||||. ..+..+ +..++
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~--~~~~~~-------~~~~~ 71 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSA-FVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQ--ERYRTI-------TTAYY 71 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCC-CCCceeeEEEEEEEEECCEEEEEEEEECCCh--HHHHHH-------HHHHc
Confidence 4899999999999999999999886421 1121111 11111 22333468999999994 333322 34558
Q ss_pred cccceEEEEecCCCCC--chHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHH-HHHHHHHhhcCCCccEEEcccCCCCC
Q 014942 194 INADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGHG 270 (415)
Q Consensus 194 ~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g~g 270 (415)
+.+|++++|+|.++.. .....|+..+........|+++|+||+|+.....+ .+....+....+ .+++++||++|.|
T Consensus 72 ~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~g 150 (165)
T cd01865 72 RGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLG-FEFFEASAKENIN 150 (165)
T ss_pred cCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcC-CEEEEEECCCCCC
Confidence 9999999999997643 33344444433322246899999999999754321 111222222233 3799999999999
Q ss_pred HHHHHHHHHhhCC
Q 014942 271 VEDIRDWILTKLP 283 (415)
Q Consensus 271 v~eL~~~L~~~l~ 283 (415)
+++|+++|.+.+.
T Consensus 151 v~~l~~~l~~~~~ 163 (165)
T cd01865 151 VKQVFERLVDIIC 163 (165)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988654
No 47
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=1.1e-20 Score=164.18 Aligned_cols=166 Identities=21% Similarity=0.199 Sum_probs=122.5
Q ss_pred CCCCccEEEEEecCCCCHHHHHHHHhCCceee-eeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHH
Q 014942 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQKLSI-VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNV 189 (415)
Q Consensus 111 ~~~~~~~V~ivG~~~vGKSSLln~l~~~~~~~-~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~ 189 (415)
...+..+|+++|..+||||||+++++...+.. ...+.|.........+....+++.+|||+| +++|+.+ +
T Consensus 18 ~~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAG--QERFrsl-------i 88 (221)
T KOG0094|consen 18 APLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG--QERFRSL-------I 88 (221)
T ss_pred ccceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEeccc--HHHHhhh-------h
Confidence 34466799999999999999999999887742 111122222222223445567899999999 7887776 4
Q ss_pred HhhhcccceEEEEecCCCC--CchHHHHHHHHhcccCC-CCCEEEEEeCCCCCChhHHHHHHHHHhhcCCCccEEEcccC
Q 014942 190 RSAGINADCIVVLVDACKA--PERIDEILEEGVGDHKD-KLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAK 266 (415)
Q Consensus 190 ~~~~~~aD~ii~VvD~~~~--~~~~~~~l~~~l~~~~~-~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~ 266 (415)
..|++++.++|+|+|.++. ++....|+....+.... +.-++||+||.||.+++++...........-...++++||+
T Consensus 89 psY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak 168 (221)
T KOG0094|consen 89 PSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAK 168 (221)
T ss_pred hhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEeccc
Confidence 5569999999999999864 47788898888877544 35688999999999887665443332222222479999999
Q ss_pred CCCCHHHHHHHHHhhCCCC
Q 014942 267 YGHGVEDIRDWILTKLPLG 285 (415)
Q Consensus 267 ~g~gv~eL~~~L~~~l~~~ 285 (415)
.|.||..||..|...+|..
T Consensus 169 ~g~NVk~lFrrIaa~l~~~ 187 (221)
T KOG0094|consen 169 AGENVKQLFRRIAAALPGM 187 (221)
T ss_pred CCCCHHHHHHHHHHhccCc
Confidence 9999999999999998863
No 48
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.86 E-value=1e-20 Score=170.11 Aligned_cols=156 Identities=20% Similarity=0.167 Sum_probs=107.7
Q ss_pred CCccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhh
Q 014942 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (415)
Q Consensus 113 ~~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~ 192 (415)
.+..+|+++|.+|||||||+++|.+..+..+. +|.......+...+.++.+|||||. ..+. ..+..+
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~D~~G~--~~~~-------~~~~~~ 81 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQHQ----PTQHPTSEELAIGNIKFTTFDLGGH--QQAR-------RLWKDY 81 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCcccC----CccccceEEEEECCEEEEEEECCCC--HHHH-------HHHHHH
Confidence 35679999999999999999999988764322 2222233344556789999999995 2222 224456
Q ss_pred hcccceEEEEecCCCCC--chHHHHHHHHhccc-CCCCCEEEEEeCCCCCChhHHHHHHHHHhhc----------CCCcc
Q 014942 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEKF----------TDVDE 259 (415)
Q Consensus 193 ~~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~-~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~----------~~~~~ 259 (415)
+..+|++++|+|++++. .....++.+++... ..+.|+++|+||+|+.......++.+.+... .+...
T Consensus 82 ~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~~~~~~ 161 (184)
T smart00178 82 FPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKGKVGVRPLE 161 (184)
T ss_pred hCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCcccccccccCCceeE
Confidence 88999999999998753 33334444444321 1578999999999986433333333333211 13446
Q ss_pred EEEcccCCCCCHHHHHHHHHhh
Q 014942 260 VIPVSAKYGHGVEDIRDWILTK 281 (415)
Q Consensus 260 i~~vSA~~g~gv~eL~~~L~~~ 281 (415)
+++|||++|.|++++++||.+.
T Consensus 162 i~~~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 162 VFMCSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred EEEeecccCCChHHHHHHHHhh
Confidence 8999999999999999999865
No 49
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.86 E-value=7.8e-21 Score=167.63 Aligned_cols=155 Identities=21% Similarity=0.246 Sum_probs=105.2
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeE---EEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhh
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRI---LGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~---~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~ 192 (415)
.+|+++|++|||||||+++|.+..+. ...+.|+.... ..........+.+|||||. ..+.. .+..+
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~-------~~~~~ 71 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFM--ADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQ--ERFRA-------VTRSY 71 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC--CCCCcccceeEEEEEEEECCEEEEEEEEECCCc--HHHHH-------HHHHH
Confidence 48999999999999999999988764 33343332222 1123334567899999994 33332 23455
Q ss_pred hcccceEEEEecCCCCC--chHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHH-HHHHHHHhhcCCCccEEEcccCCCC
Q 014942 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGH 269 (415)
Q Consensus 193 ~~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g~ 269 (415)
++.+|++|+|+|++++. .....|+.........+.|+++|+||+|+.....+ .+....+....+ .+++++||++|.
T Consensus 72 ~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~e~Sa~~~~ 150 (166)
T cd04122 72 YRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENG-LLFLECSAKTGE 150 (166)
T ss_pred hcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcC-CEEEEEECCCCC
Confidence 78999999999998754 33444544433322357899999999999754332 112222222223 489999999999
Q ss_pred CHHHHHHHHHhhC
Q 014942 270 GVEDIRDWILTKL 282 (415)
Q Consensus 270 gv~eL~~~L~~~l 282 (415)
|+++++..|+..+
T Consensus 151 ~i~e~f~~l~~~~ 163 (166)
T cd04122 151 NVEDAFLETAKKI 163 (166)
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998765
No 50
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.86 E-value=6.3e-21 Score=167.73 Aligned_cols=155 Identities=19% Similarity=0.206 Sum_probs=104.8
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEe--CCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhh
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~--~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~ 193 (415)
.+|+++|.+|||||||+++++...+. ...++|+.+.....+. .....+.+|||||. ..+..+. ..++
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~~-------~~~~ 70 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIFV--EKYDPTIEDSYRKQVEVDGQQCMLEILDTAGT--EQFTAMR-------DLYM 70 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCCC--cccCCcchheEEEEEEECCEEEEEEEEECCCc--ccchhHH-------HHHH
Confidence 48999999999999999999976553 3344455443332333 33456789999994 4444433 3347
Q ss_pred cccceEEEEecCCCCC--chHHHHHHHHhcc-cCCCCCEEEEEeCCCCCChhHHH-HHHHHHhhcCCCccEEEcccCCCC
Q 014942 194 INADCIVVLVDACKAP--ERIDEILEEGVGD-HKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYGH 269 (415)
Q Consensus 194 ~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~-~~~~~piilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~i~~vSA~~g~ 269 (415)
+.+|++++|+|.++.. .....++..+... ...+.|+++|+||+|+.....+. .....+.+..+ .+++++||++|.
T Consensus 71 ~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 149 (164)
T cd04175 71 KNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWG-CAFLETSAKAKI 149 (164)
T ss_pred hhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhC-CEEEEeeCCCCC
Confidence 8899999999987543 3344444444432 12678999999999997532221 11222322223 489999999999
Q ss_pred CHHHHHHHHHhhC
Q 014942 270 GVEDIRDWILTKL 282 (415)
Q Consensus 270 gv~eL~~~L~~~l 282 (415)
|+++++.+|.+.+
T Consensus 150 ~v~~~~~~l~~~l 162 (164)
T cd04175 150 NVNEIFYDLVRQI 162 (164)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998765
No 51
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.86 E-value=9.8e-21 Score=167.25 Aligned_cols=155 Identities=16% Similarity=0.122 Sum_probs=103.5
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeE--EEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhh
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRI--LGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~--~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~ 193 (415)
.+|+++|++|||||||++++.+.++... ..+..+.+.. ...+......+.+|||||. ..+..+ ...++
T Consensus 4 ~ki~vvG~~~~GKSsl~~~~~~~~f~~~-~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~--~~~~~~-------~~~~~ 73 (167)
T cd01867 4 FKLLLIGDSGVGKSCLLLRFSEDSFNPS-FISTIGIDFKIRTIELDGKKIKLQIWDTAGQ--ERFRTI-------TTAYY 73 (167)
T ss_pred eEEEEECCCCCCHHHHHHHHhhCcCCcc-cccCccceEEEEEEEECCEEEEEEEEeCCch--HHHHHH-------HHHHh
Confidence 5899999999999999999998876421 1222221221 1223333467899999994 333322 34457
Q ss_pred cccceEEEEecCCCCC--chHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHH--HHHHHHHhhcCCCccEEEcccCCCC
Q 014942 194 INADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI--AKKLEWYEKFTDVDEVIPVSAKYGH 269 (415)
Q Consensus 194 ~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~i~~vSA~~g~ 269 (415)
+.+|++|+|+|++++. .....|+....+....+.|+++|+||+|+.....+ ........ ..+ .+++++||++|.
T Consensus 74 ~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~-~~~-~~~~~~Sa~~~~ 151 (167)
T cd01867 74 RGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALAD-EYG-IKFLETSAKANI 151 (167)
T ss_pred CCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHH-HcC-CEEEEEeCCCCC
Confidence 8999999999997654 23334444433322357899999999999753321 22222222 223 479999999999
Q ss_pred CHHHHHHHHHhhC
Q 014942 270 GVEDIRDWILTKL 282 (415)
Q Consensus 270 gv~eL~~~L~~~l 282 (415)
|+++++++|.+.+
T Consensus 152 ~v~~~~~~i~~~~ 164 (167)
T cd01867 152 NVEEAFFTLAKDI 164 (167)
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998865
No 52
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.86 E-value=7.6e-21 Score=169.11 Aligned_cols=156 Identities=15% Similarity=0.152 Sum_probs=103.8
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEE--EEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhh
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~--~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~ 193 (415)
.+|+++|.+|||||||++++++..+. .....|....... .+......+.+|||||. ..+..+ +..++
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~l-------~~~~~ 71 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHSFP--DYHDPTIEDAYKQQARIDNEPALLDILDTAGQ--AEFTAM-------RDQYM 71 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCC--CCcCCcccceEEEEEEECCEEEEEEEEeCCCc--hhhHHH-------hHHHh
Confidence 58999999999999999999988764 2222333222222 23334467899999994 444433 34457
Q ss_pred cccceEEEEecCCCCC--chHHHHHHHHhcc-cCCCCCEEEEEeCCCCCChhHHHH-HHHHHhhcCCCccEEEcccCCCC
Q 014942 194 INADCIVVLVDACKAP--ERIDEILEEGVGD-HKDKLPILLVLNKKDLIKPGEIAK-KLEWYEKFTDVDEVIPVSAKYGH 269 (415)
Q Consensus 194 ~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~-~~~~~piilV~NK~Dl~~~~~~~~-~~~~~~~~~~~~~i~~vSA~~g~ 269 (415)
..+|++|+|+|+++.. .....|+..+.+. ...+.|+++|+||+|+.....+.. ....+.+..+ .++++|||++|.
T Consensus 72 ~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~-~~~~e~Sa~~~~ 150 (172)
T cd04141 72 RCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFN-CPFFETSAALRH 150 (172)
T ss_pred hcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhC-CEEEEEecCCCC
Confidence 8999999999998764 2333322222111 125799999999999865432221 1222222223 489999999999
Q ss_pred CHHHHHHHHHhhCC
Q 014942 270 GVEDIRDWILTKLP 283 (415)
Q Consensus 270 gv~eL~~~L~~~l~ 283 (415)
||+++|++|++.+.
T Consensus 151 ~v~~~f~~l~~~~~ 164 (172)
T cd04141 151 YIDDAFHGLVREIR 164 (172)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999997664
No 53
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.86 E-value=1.1e-20 Score=166.62 Aligned_cols=153 Identities=22% Similarity=0.254 Sum_probs=99.9
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEE--eEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhh
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRH--RILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~--~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~ 193 (415)
.+|+++|.+|||||||++++++..+.. ....+... ............+.+|||||. ..+..+ ...++
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~-------~~~~~ 70 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRE--SYIPTIEDTYRQVISCSKNICTLQITDTTGS--HQFPAM-------QRLSI 70 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCC--CcCCcchheEEEEEEECCEEEEEEEEECCCC--CcchHH-------HHHHh
Confidence 479999999999999999999887642 11111111 111223344567899999995 333332 23446
Q ss_pred cccceEEEEecCCCCC--chHHHHHHHHhcc----cCCCCCEEEEEeCCCCCChhHHHH-HHHHHhhcCCCccEEEcccC
Q 014942 194 INADCIVVLVDACKAP--ERIDEILEEGVGD----HKDKLPILLVLNKKDLIKPGEIAK-KLEWYEKFTDVDEVIPVSAK 266 (415)
Q Consensus 194 ~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~----~~~~~piilV~NK~Dl~~~~~~~~-~~~~~~~~~~~~~i~~vSA~ 266 (415)
..+|++|+|+|.++.. .....++ ..++. ...+.|+++|+||+|+.....+.. ....+....+ .+++++||+
T Consensus 71 ~~~~~~ilv~d~~~~~s~~~~~~~~-~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~e~SA~ 148 (165)
T cd04140 71 SKGHAFILVYSVTSKQSLEELKPIY-ELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWN-CAFMETSAK 148 (165)
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHH-HHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhC-CcEEEeecC
Confidence 7899999999998754 2233332 22221 125789999999999975333221 1122222222 478999999
Q ss_pred CCCCHHHHHHHHHhh
Q 014942 267 YGHGVEDIRDWILTK 281 (415)
Q Consensus 267 ~g~gv~eL~~~L~~~ 281 (415)
+|.|+++++++|.+.
T Consensus 149 ~g~~v~~~f~~l~~~ 163 (165)
T cd04140 149 TNHNVQELFQELLNL 163 (165)
T ss_pred CCCCHHHHHHHHHhc
Confidence 999999999999865
No 54
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.86 E-value=1.6e-20 Score=164.68 Aligned_cols=157 Identities=21% Similarity=0.211 Sum_probs=106.5
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCceee-eeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhc
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQKLSI-VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~~~~-~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (415)
.+|+++|++|||||||+|+|++.++.. .....+.+.......+...+..+.+||||| +..+.. ....+++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G--~~~~~~-------~~~~~~~ 72 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAG--QERYRS-------LAPMYYR 72 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCc--hHHHHH-------HHHHHhc
Confidence 489999999999999999999988753 222223222222333444556889999999 333332 2334578
Q ss_pred ccceEEEEecCCCCC--chHHHHHHHHhcccCCCCCEEEEEeCCCCCChh--HHHHHHHHHhhcCCCccEEEcccCCCCC
Q 014942 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG--EIAKKLEWYEKFTDVDEVIPVSAKYGHG 270 (415)
Q Consensus 195 ~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~--~~~~~~~~~~~~~~~~~i~~vSA~~g~g 270 (415)
.+|++++|+|++++. .....++..+........|+++|+||+|+.... ........... .+ .+++++||++|.|
T Consensus 73 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~-~~-~~~~~~Sa~~~~~ 150 (163)
T cd01860 73 GAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADE-NG-LLFFETSAKTGEN 150 (163)
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHH-cC-CEEEEEECCCCCC
Confidence 999999999998653 333444444433322568999999999987322 12222222332 23 5799999999999
Q ss_pred HHHHHHHHHhhCC
Q 014942 271 VEDIRDWILTKLP 283 (415)
Q Consensus 271 v~eL~~~L~~~l~ 283 (415)
+.+++++|.+.+|
T Consensus 151 v~~l~~~l~~~l~ 163 (163)
T cd01860 151 VNELFTEIAKKLP 163 (163)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999998763
No 55
>PRK04213 GTP-binding protein; Provisional
Probab=99.86 E-value=2.8e-20 Score=169.42 Aligned_cols=163 Identities=26% Similarity=0.340 Sum_probs=106.5
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhh------hhhHhHHHHH
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK------IHMLDSMMMK 187 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~------~~~l~~~~~~ 187 (415)
+.++|+++|.+|||||||+|+|.+..+. ++..+++|+...... .. .+.+|||||+.... ...+...+..
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~-~~~~~~~t~~~~~~~--~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 82 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKVR-VGKRPGVTRKPNHYD--WG--DFILTDLPGFGFMSGVPKEVQEKIKDEIVR 82 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCc-cCCCCceeeCceEEe--ec--ceEEEeCCccccccccCHHHHHHHHHHHHH
Confidence 4569999999999999999999998754 567788887654322 22 68999999952100 1112221212
Q ss_pred HHHhhhcccceEEEEecCCCCCc-----------hHHHHHHHHhcccCCCCCEEEEEeCCCCCChh--HHHHHHHHHhhc
Q 014942 188 NVRSAGINADCIVVLVDACKAPE-----------RIDEILEEGVGDHKDKLPILLVLNKKDLIKPG--EIAKKLEWYEKF 254 (415)
Q Consensus 188 ~~~~~~~~aD~ii~VvD~~~~~~-----------~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~--~~~~~~~~~~~~ 254 (415)
.+...+..++++++|+|++.... ..+..+...+.. .++|+++|+||+|+.... ...+....+...
T Consensus 83 ~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~ 160 (201)
T PRK04213 83 YIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE--LGIPPIVAVNKMDKIKNRDEVLDEIAERLGLY 160 (201)
T ss_pred HHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH--cCCCeEEEEECccccCcHHHHHHHHHHHhcCC
Confidence 22233456789999999864321 122334444444 579999999999997543 222222222110
Q ss_pred CC----CccEEEcccCCCCCHHHHHHHHHhhCCC
Q 014942 255 TD----VDEVIPVSAKYGHGVEDIRDWILTKLPL 284 (415)
Q Consensus 255 ~~----~~~i~~vSA~~g~gv~eL~~~L~~~l~~ 284 (415)
.. ..+++++||++| |+++++++|.+.+++
T Consensus 161 ~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~ 193 (201)
T PRK04213 161 PPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHE 193 (201)
T ss_pred ccccccCCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence 01 125899999999 999999999998765
No 56
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.85 E-value=9.3e-21 Score=169.11 Aligned_cols=155 Identities=21% Similarity=0.196 Sum_probs=106.9
Q ss_pred EEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEE--EEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhc
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~--~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (415)
+|+++|.+|||||||+.+++...+. ..+..|....... ........+.+|||+| ++.+..+.. .+++
T Consensus 3 kivv~G~~~vGKTsli~~~~~~~f~--~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G--~~~~~~~~~-------~~~~ 71 (176)
T cd04133 3 KCVTVGDGAVGKTCMLICYTSNKFP--TDYIPTVFDNFSANVSVDGNTVNLGLWDTAG--QEDYNRLRP-------LSYR 71 (176)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCC--CCCCCcceeeeEEEEEECCEEEEEEEEECCC--Cccccccch-------hhcC
Confidence 7999999999999999999988774 2223333222222 2334457889999999 455554433 3488
Q ss_pred ccceEEEEecCCCCC--chH-HHHHHHHhcccCCCCCEEEEEeCCCCCChh-----------HHHHHHHHHhhcCCCccE
Q 014942 195 NADCIVVLVDACKAP--ERI-DEILEEGVGDHKDKLPILLVLNKKDLIKPG-----------EIAKKLEWYEKFTDVDEV 260 (415)
Q Consensus 195 ~aD~ii~VvD~~~~~--~~~-~~~l~~~l~~~~~~~piilV~NK~Dl~~~~-----------~~~~~~~~~~~~~~~~~i 260 (415)
++|++|+|+|.++.. ... ..|+..+ +....+.|++||+||+|+.+.. ...+....+....+..++
T Consensus 72 ~a~~~ilvyd~~~~~Sf~~~~~~w~~~i-~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~ 150 (176)
T cd04133 72 GADVFVLAFSLISRASYENVLKKWVPEL-RHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAY 150 (176)
T ss_pred CCcEEEEEEEcCCHHHHHHHHHHHHHHH-HHhCCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEE
Confidence 999999999998654 333 3344443 3323579999999999996432 112223333333344469
Q ss_pred EEcccCCCCCHHHHHHHHHhhCC
Q 014942 261 IPVSAKYGHGVEDIRDWILTKLP 283 (415)
Q Consensus 261 ~~vSA~~g~gv~eL~~~L~~~l~ 283 (415)
++|||++|.||+++|+.+++.+.
T Consensus 151 ~E~SAk~~~nV~~~F~~~~~~~~ 173 (176)
T cd04133 151 IECSSKTQQNVKAVFDAAIKVVL 173 (176)
T ss_pred EECCCCcccCHHHHHHHHHHHHh
Confidence 99999999999999999998764
No 57
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.85 E-value=1.3e-20 Score=165.25 Aligned_cols=155 Identities=19% Similarity=0.200 Sum_probs=105.2
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEE--EeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhh
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~--~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~ 193 (415)
.+|+++|.+|||||||++++++..+. +..++++....... +......+.+|||||. ..+..+ ...++
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~-------~~~~~ 71 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSYFV--TDYDPTIEDSYTKQCEIDGQWAILDILDTAGQ--EEFSAM-------REQYM 71 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCC--cccCCCccceEEEEEEECCEEEEEEEEECCCC--cchhHH-------HHHHH
Confidence 48999999999999999999987653 44445544433332 3333457889999995 333333 33457
Q ss_pred cccceEEEEecCCCCC--chHHHHHHHHhccc-CCCCCEEEEEeCCCCCChhHHH-HHHHHHhhcCCCccEEEcccCCCC
Q 014942 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYGH 269 (415)
Q Consensus 194 ~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~-~~~~piilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~i~~vSA~~g~ 269 (415)
+.+|++++|+|+++.. .....++..+.+.. ..+.|+++|+||+|+.....+. .....+....+ .+++++||++|.
T Consensus 72 ~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 150 (164)
T cd04145 72 RTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLK-IPYIETSAKDRL 150 (164)
T ss_pred hhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcC-CcEEEeeCCCCC
Confidence 8899999999998754 33334444333221 2578999999999997543221 11222222223 489999999999
Q ss_pred CHHHHHHHHHhhC
Q 014942 270 GVEDIRDWILTKL 282 (415)
Q Consensus 270 gv~eL~~~L~~~l 282 (415)
|+++++++|.+.+
T Consensus 151 ~i~~l~~~l~~~~ 163 (164)
T cd04145 151 NVDKAFHDLVRVI 163 (164)
T ss_pred CHHHHHHHHHHhh
Confidence 9999999998764
No 58
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.85 E-value=1.6e-20 Score=169.94 Aligned_cols=157 Identities=24% Similarity=0.217 Sum_probs=106.7
Q ss_pred EEEEEecCCCCHHHHHHHHhCCc------eeeeeCCCCceEEeEEEEEeC--------------CCeeEEEEeCCCCchh
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQK------LSIVTNKPQTTRHRILGICSG--------------PEYQMILYDTPGIIEK 176 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~~------~~~~~~~~~tt~~~~~~~~~~--------------~~~~l~liDtpG~~~~ 176 (415)
+|+++|++|+|||||+++|++.. .......+++|.......+.. .+..+.+|||||+.
T Consensus 2 ~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~-- 79 (192)
T cd01889 2 NVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHA-- 79 (192)
T ss_pred eEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcH--
Confidence 69999999999999999998731 111233445665544332222 26789999999952
Q ss_pred hhhhHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHH----HHHHHHh
Q 014942 177 KIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA----KKLEWYE 252 (415)
Q Consensus 177 ~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~----~~~~~~~ 252 (415)
. +...+......+|++++|+|++++.............. .+.|+++|+||+|+....... ...+.+.
T Consensus 80 ~-------~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~--~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~ 150 (192)
T cd01889 80 S-------LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEI--LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQ 150 (192)
T ss_pred H-------HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHH--cCCCEEEEEECcccCCHHHHHHHHHHHHHHHH
Confidence 1 23334455678999999999988765444332223333 467999999999997543322 2222221
Q ss_pred hc-----CCCccEEEcccCCCCCHHHHHHHHHhhCCC
Q 014942 253 KF-----TDVDEVIPVSAKYGHGVEDIRDWILTKLPL 284 (415)
Q Consensus 253 ~~-----~~~~~i~~vSA~~g~gv~eL~~~L~~~l~~ 284 (415)
.. ....+++++||++|.|+++|+++|..+++.
T Consensus 151 ~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~ 187 (192)
T cd01889 151 KTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIVL 187 (192)
T ss_pred HHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhcccc
Confidence 11 234589999999999999999999999875
No 59
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.85 E-value=1.4e-20 Score=167.75 Aligned_cols=156 Identities=28% Similarity=0.310 Sum_probs=102.0
Q ss_pred EEEEEecCCCCHHHHHHHHhCCceee--------ee------CCCCceEEeEEEEE-----eCCCeeEEEEeCCCCchhh
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQKLSI--------VT------NKPQTTRHRILGIC-----SGPEYQMILYDTPGIIEKK 177 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~~~~~--------~~------~~~~tt~~~~~~~~-----~~~~~~l~liDtpG~~~~~ 177 (415)
.|+++|++|||||||+++|++..... .. ...+.|.......+ ...+..+.||||||+. .
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~--~ 79 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHV--D 79 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCCh--h
Confidence 69999999999999999998743110 00 11233433222222 3456789999999963 2
Q ss_pred hhhHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHHHHHHHhhcCC-
Q 014942 178 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTD- 256 (415)
Q Consensus 178 ~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~- 256 (415)
+ ...+..++..+|++|+|+|++++........+..+.. .++|+++|+||+|+..... ......+....+
T Consensus 80 ~-------~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~--~~~~iiiv~NK~Dl~~~~~-~~~~~~~~~~~~~ 149 (179)
T cd01890 80 F-------SYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALE--NNLEIIPVINKIDLPSADP-ERVKQQIEDVLGL 149 (179)
T ss_pred h-------HHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHH--cCCCEEEEEECCCCCcCCH-HHHHHHHHHHhCC
Confidence 2 2234556789999999999987654333222222223 5789999999999864321 111222222222
Q ss_pred -CccEEEcccCCCCCHHHHHHHHHhhCCC
Q 014942 257 -VDEVIPVSAKYGHGVEDIRDWILTKLPL 284 (415)
Q Consensus 257 -~~~i~~vSA~~g~gv~eL~~~L~~~l~~ 284 (415)
..+++++||++|.|+++|+++|.+.+|.
T Consensus 150 ~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 178 (179)
T cd01890 150 DPSEAILVSAKTGLGVEDLLEAIVERIPP 178 (179)
T ss_pred CcccEEEeeccCCCCHHHHHHHHHhhCCC
Confidence 2358999999999999999999998764
No 60
>PLN03118 Rab family protein; Provisional
Probab=99.85 E-value=9.2e-21 Score=174.20 Aligned_cols=166 Identities=19% Similarity=0.193 Sum_probs=110.5
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~ 193 (415)
...+|+|+|.+|||||||+++|++..+.......+.+.......+......+.+|||||. ..+..+ +..++
T Consensus 13 ~~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~--~~~~~~-------~~~~~ 83 (211)
T PLN03118 13 LSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQ--ERFRTL-------TSSYY 83 (211)
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCc--hhhHHH-------HHHHH
Confidence 456999999999999999999998876433333333222222223344568899999994 344333 34457
Q ss_pred cccceEEEEecCCCCC--chHHHHHHHHhccc--CCCCCEEEEEeCCCCCChhHH--HHHHHHHhhcCCCccEEEcccCC
Q 014942 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH--KDKLPILLVLNKKDLIKPGEI--AKKLEWYEKFTDVDEVIPVSAKY 267 (415)
Q Consensus 194 ~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~--~~~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~i~~vSA~~ 267 (415)
+.+|++|+|+|+++.. ......+...+... ..+.|+++|+||+|+.....+ ......... .+ .+++++||++
T Consensus 84 ~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~-~~-~~~~e~SAk~ 161 (211)
T PLN03118 84 RNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKE-HG-CLFLECSAKT 161 (211)
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHH-cC-CEEEEEeCCC
Confidence 8999999999998653 22222232222211 246799999999999754332 122222222 22 4789999999
Q ss_pred CCCHHHHHHHHHhhCCCCCCCCC
Q 014942 268 GHGVEDIRDWILTKLPLGPAYYP 290 (415)
Q Consensus 268 g~gv~eL~~~L~~~l~~~~~~~~ 290 (415)
|.|+++++++|.+.+...+..++
T Consensus 162 ~~~v~~l~~~l~~~~~~~~~~~~ 184 (211)
T PLN03118 162 RENVEQCFEELALKIMEVPSLLE 184 (211)
T ss_pred CCCHHHHHHHHHHHHHhhhhhhh
Confidence 99999999999999877665554
No 61
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.85 E-value=1.1e-20 Score=167.08 Aligned_cols=158 Identities=19% Similarity=0.242 Sum_probs=104.5
Q ss_pred EEEEEecCCCCHHHHHHHHhCCceee-eeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhcc
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQKLSI-VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~~~~~-~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (415)
+|+++|.+|||||||+++++...+.. ..+..+................+.+|||||. +.+..+.. .++..
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~~~-------~~~~~ 72 (166)
T cd00877 2 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQ--EKFGGLRD-------GYYIG 72 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCC--hhhccccH-------HHhcC
Confidence 79999999999999999998766431 1111111222222222334568999999995 33433322 23678
Q ss_pred cceEEEEecCCCCC--chHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHHHHHHHhhcCCCccEEEcccCCCCCHHH
Q 014942 196 ADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVED 273 (415)
Q Consensus 196 aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gv~e 273 (415)
+|++|+|+|.+++. .....++..+.+. ..+.|+++|+||+|+..........+ +... ...+++++||++|.|+++
T Consensus 73 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~-~~~~-~~~~~~e~Sa~~~~~v~~ 149 (166)
T cd00877 73 GQCAIIMFDVTSRVTYKNVPNWHRDLVRV-CGNIPIVLCGNKVDIKDRKVKAKQIT-FHRK-KNLQYYEISAKSNYNFEK 149 (166)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHh-CCCCcEEEEEEchhcccccCCHHHHH-HHHH-cCCEEEEEeCCCCCChHH
Confidence 99999999998654 2333444444333 24799999999999974322122222 2222 345799999999999999
Q ss_pred HHHHHHhhCCCCC
Q 014942 274 IRDWILTKLPLGP 286 (415)
Q Consensus 274 L~~~L~~~l~~~~ 286 (415)
++++|.+.+...|
T Consensus 150 ~f~~l~~~~~~~~ 162 (166)
T cd00877 150 PFLWLARKLLGNP 162 (166)
T ss_pred HHHHHHHHHHhcc
Confidence 9999998876544
No 62
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.85 E-value=1.7e-20 Score=168.25 Aligned_cols=157 Identities=22% Similarity=0.270 Sum_probs=112.5
Q ss_pred EEEEEecCCCCHHHHHHHHhCCceeeee---------------CCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhH
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQKLSIVT---------------NKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHML 181 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~~~~~~~---------------~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l 181 (415)
+|+++|.+|+|||||+|+|++....... ...++|.......+...+..+.||||||+..
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~------ 74 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHED------ 74 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHH------
Confidence 4899999999999999999887654211 1233444444444556677999999999632
Q ss_pred hHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHH----HHHHHhhc---
Q 014942 182 DSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK----KLEWYEKF--- 254 (415)
Q Consensus 182 ~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~----~~~~~~~~--- 254 (415)
+...+..++..+|++++|+|++++.......+...+.. .+.|+++|+||+|+........ ..+.+...
T Consensus 75 ---~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~--~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 149 (189)
T cd00881 75 ---FSSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIARE--GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFI 149 (189)
T ss_pred ---HHHHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHH--CCCCeEEEEECCCCcchhcHHHHHHHHHHHHcccccc
Confidence 22234555789999999999988775555555555554 6899999999999986433222 22222221
Q ss_pred ---------CCCccEEEcccCCCCCHHHHHHHHHhhCCC
Q 014942 255 ---------TDVDEVIPVSAKYGHGVEDIRDWILTKLPL 284 (415)
Q Consensus 255 ---------~~~~~i~~vSA~~g~gv~eL~~~L~~~l~~ 284 (415)
....+++++||++|.|+++++++|.+.+|+
T Consensus 150 ~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~~ 188 (189)
T cd00881 150 STKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLPP 188 (189)
T ss_pred chhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhCCC
Confidence 134689999999999999999999999874
No 63
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.85 E-value=1.3e-20 Score=165.88 Aligned_cols=156 Identities=21% Similarity=0.247 Sum_probs=103.9
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEe--CCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhh
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~--~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~ 193 (415)
.+|+++|.+|||||||+++|.+..+... ..+..+.+.....+. .....+.+|||||. ..+..+ ...++
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~--~~~~~~-------~~~~~ 73 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEFNLD-SKSTIGVEFATRSIQIDGKTIKAQIWDTAGQ--ERYRAI-------TSAYY 73 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCC-CCCccceEEEEEEEEECCEEEEEEEEeCCCh--HHHHHH-------HHHHH
Confidence 4899999999999999999998876532 223333222222222 23357899999994 333332 33457
Q ss_pred cccceEEEEecCCCCC--chHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHH-HHHHHHHhhcCCCccEEEcccCCCCC
Q 014942 194 INADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGHG 270 (415)
Q Consensus 194 ~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g~g 270 (415)
..++++|+|+|+++.. .....|+..+......+.|+++|+||+|+.....+ .+....+.... ..+++++||++|.|
T Consensus 74 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~ 152 (165)
T cd01868 74 RGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKN-GLSFIETSALDGTN 152 (165)
T ss_pred CCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHc-CCEEEEEECCCCCC
Confidence 8999999999998543 33344444443332246899999999998753321 11222222222 34799999999999
Q ss_pred HHHHHHHHHhhC
Q 014942 271 VEDIRDWILTKL 282 (415)
Q Consensus 271 v~eL~~~L~~~l 282 (415)
+++++++|.+.+
T Consensus 153 v~~l~~~l~~~i 164 (165)
T cd01868 153 VEEAFKQLLTEI 164 (165)
T ss_pred HHHHHHHHHHHh
Confidence 999999998764
No 64
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.85 E-value=3.7e-20 Score=163.06 Aligned_cols=156 Identities=20% Similarity=0.222 Sum_probs=108.1
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeC---CCeeEEEEeCCCCchhhhhhHhHHHHHHHHhh
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG---PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~---~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~ 192 (415)
|.|+++|++|+|||||+|+|.+..+.. ...+++|.......+.. .+..+.+|||||. ..+..+ +..+
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~--~~~~~~-------~~~~ 70 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVAA-GEAGGITQHIGAFEVPAEVLKIPGITFIDTPGH--EAFTNM-------RARG 70 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhccccc-ccCCCeEEeeccEEEecccCCcceEEEEeCCCc--HHHHHH-------HHHH
Confidence 469999999999999999999877653 33445555543334443 3678999999995 333322 2334
Q ss_pred hcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChh--HHHHHHHHHhh-----cCCCccEEEccc
Q 014942 193 GINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG--EIAKKLEWYEK-----FTDVDEVIPVSA 265 (415)
Q Consensus 193 ~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~--~~~~~~~~~~~-----~~~~~~i~~vSA 265 (415)
+..+|++++|+|++++...........+.. .+.|+++|+||+|+.... .+......+.. .....+++++||
T Consensus 71 ~~~~d~il~v~d~~~~~~~~~~~~~~~~~~--~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 148 (168)
T cd01887 71 ASLTDIAILVVAADDGVMPQTIEAIKLAKA--ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSA 148 (168)
T ss_pred HhhcCEEEEEEECCCCccHHHHHHHHHHHH--cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeec
Confidence 678999999999987654444334444444 678999999999987432 22222222211 122358999999
Q ss_pred CCCCCHHHHHHHHHhhCC
Q 014942 266 KYGHGVEDIRDWILTKLP 283 (415)
Q Consensus 266 ~~g~gv~eL~~~L~~~l~ 283 (415)
++|.|+++|+++|.+...
T Consensus 149 ~~~~gi~~l~~~l~~~~~ 166 (168)
T cd01887 149 KTGEGIDDLLEAILLLAE 166 (168)
T ss_pred ccCCCHHHHHHHHHHhhh
Confidence 999999999999987654
No 65
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.85 E-value=2.9e-20 Score=169.77 Aligned_cols=161 Identities=28% Similarity=0.353 Sum_probs=108.9
Q ss_pred ccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCC-eeEEEEeCCCCchhhhhhHhHHHHHHHHhhh
Q 014942 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE-YQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~-~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~ 193 (415)
.++|+|+|++|||||||+|+|++..+. +...+.+|.......+...+ ..+.+|||||+.......+...+. .....+
T Consensus 41 ~~~I~iiG~~g~GKStLl~~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~-~~~~~~ 118 (204)
T cd01878 41 IPTVALVGYTNAGKSTLFNALTGADVY-AEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFR-STLEEV 118 (204)
T ss_pred CCeEEEECCCCCCHHHHHHHHhcchhc-cCCccceeccceeEEEEecCCceEEEeCCCccccCCCHHHHHHHH-HHHHHH
Confidence 358999999999999999999998753 34455566555444444444 389999999974322222222222 223346
Q ss_pred cccceEEEEecCCCCCchH-HHHHHHHhccc-CCCCCEEEEEeCCCCCChhHHHHHHHHHhhcCCCccEEEcccCCCCCH
Q 014942 194 INADCIVVLVDACKAPERI-DEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGV 271 (415)
Q Consensus 194 ~~aD~ii~VvD~~~~~~~~-~~~l~~~l~~~-~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gv 271 (415)
..+|++++|+|++++.... ...+.+.+... ..+.|+++|+||+|+....... .... ....+++++||++|.|+
T Consensus 119 ~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~~---~~~~--~~~~~~~~~Sa~~~~gi 193 (204)
T cd01878 119 AEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEELE---ERLE--AGRPDAVFISAKTGEGL 193 (204)
T ss_pred hcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHHH---HHhh--cCCCceEEEEcCCCCCH
Confidence 7899999999998765322 22223333322 1468999999999997655433 1222 23457999999999999
Q ss_pred HHHHHHHHhhC
Q 014942 272 EDIRDWILTKL 282 (415)
Q Consensus 272 ~eL~~~L~~~l 282 (415)
++++++|.+.+
T Consensus 194 ~~l~~~L~~~~ 204 (204)
T cd01878 194 DELLEAIEELL 204 (204)
T ss_pred HHHHHHHHhhC
Confidence 99999998754
No 66
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.85 E-value=1.6e-20 Score=169.97 Aligned_cols=159 Identities=19% Similarity=0.194 Sum_probs=107.0
Q ss_pred ccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEE--EEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhh
Q 014942 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~--~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~ 192 (415)
..+|+++|.+|||||||++++....+. ..+..|....... .+......+.+||||| ++.+..+ ...+
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G--~e~~~~l-------~~~~ 71 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFP--KEYIPTVFDNYSAQTAVDGRTVSLNLWDTAG--QEEYDRL-------RTLS 71 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCC--cCCCCceEeeeEEEEEECCEEEEEEEEECCC--chhhhhh-------hhhh
Confidence 458999999999999999999988764 2223333222221 2334456789999999 4555544 3345
Q ss_pred hcccceEEEEecCCCCC--chHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHH-------------HHHHHHHhhcCCC
Q 014942 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-------------AKKLEWYEKFTDV 257 (415)
Q Consensus 193 ~~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~-------------~~~~~~~~~~~~~ 257 (415)
++++|++|+|+|.+++. ......+...+.....+.|++||+||+|+.+.... .+....+....+.
T Consensus 72 ~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~ 151 (191)
T cd01875 72 YPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHA 151 (191)
T ss_pred ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCC
Confidence 78999999999998754 33332233322222357999999999999643211 1112223333344
Q ss_pred ccEEEcccCCCCCHHHHHHHHHhhCCC
Q 014942 258 DEVIPVSAKYGHGVEDIRDWILTKLPL 284 (415)
Q Consensus 258 ~~i~~vSA~~g~gv~eL~~~L~~~l~~ 284 (415)
.+++++||++|.||+++|.+|++.+..
T Consensus 152 ~~~~e~SAk~g~~v~e~f~~l~~~~~~ 178 (191)
T cd01875 152 VKYLECSALNQDGVKEVFAEAVRAVLN 178 (191)
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHhc
Confidence 579999999999999999999987743
No 67
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.85 E-value=1.4e-20 Score=165.86 Aligned_cols=157 Identities=18% Similarity=0.172 Sum_probs=104.8
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEE--eCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhh
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC--SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~--~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~ 193 (415)
.+|+++|.+|||||||++++++..+.. ...+..+.+.....+ ......+.+|||||. ..+.. ....++
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~--~~~~~-------~~~~~~ 72 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYTE-SYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ--ERFRT-------ITSSYY 72 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCccceeEEEEEEEECCEEEEEEEEECCCc--HhHHH-------HHHHHh
Confidence 489999999999999999999887653 222322222222222 233457899999994 33332 234457
Q ss_pred cccceEEEEecCCCCC--chHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHH-HHHHHHhhcCCCccEEEcccCCCCC
Q 014942 194 INADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYGHG 270 (415)
Q Consensus 194 ~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~i~~vSA~~g~g 270 (415)
+.+|++|+|+|+++.. .....|+.........+.|+++|+||+|+.....+. .....+....+ .+++++||++|.|
T Consensus 73 ~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~ 151 (166)
T cd01869 73 RGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELG-IPFLETSAKNATN 151 (166)
T ss_pred CcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcC-CeEEEEECCCCcC
Confidence 8999999999998743 334444444333222568999999999986543321 11222222223 4899999999999
Q ss_pred HHHHHHHHHhhCC
Q 014942 271 VEDIRDWILTKLP 283 (415)
Q Consensus 271 v~eL~~~L~~~l~ 283 (415)
+++++.+|.+.+.
T Consensus 152 v~~~~~~i~~~~~ 164 (166)
T cd01869 152 VEQAFMTMAREIK 164 (166)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987653
No 68
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.85 E-value=2e-20 Score=170.62 Aligned_cols=158 Identities=19% Similarity=0.231 Sum_probs=105.3
Q ss_pred EEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEE--e-CCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhh
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC--S-GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~--~-~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~ 193 (415)
+|+++|.+|||||||+++|++..+.. ...+....+.....+ . .....+.+|||||. +.+..+ +..++
T Consensus 2 KivivG~~~vGKTsli~~l~~~~~~~-~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~--~~~~~~-------~~~~~ 71 (201)
T cd04107 2 KVLVIGDLGVGKTSIIKRYVHGIFSQ-HYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQ--ERFGGM-------TRVYY 71 (201)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCC-CCCCceeEEEEEEEEEECCCCEEEEEEEECCCc--hhhhhh-------HHHHh
Confidence 79999999999999999999877542 112222222222222 2 34568899999994 333332 44558
Q ss_pred cccceEEEEecCCCCC--chHHHHHHHHhcc----cCCCCCEEEEEeCCCCCChh-HHHHHHHHHhhcCCCccEEEcccC
Q 014942 194 INADCIVVLVDACKAP--ERIDEILEEGVGD----HKDKLPILLVLNKKDLIKPG-EIAKKLEWYEKFTDVDEVIPVSAK 266 (415)
Q Consensus 194 ~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~----~~~~~piilV~NK~Dl~~~~-~~~~~~~~~~~~~~~~~i~~vSA~ 266 (415)
+++|++|+|+|++++. .....|+..+... ...+.|+++|+||+|+.... ........+....+..+++++||+
T Consensus 72 ~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak 151 (201)
T cd04107 72 RGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAK 151 (201)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCC
Confidence 9999999999998753 3333333322211 12578999999999996321 112222333333444689999999
Q ss_pred CCCCHHHHHHHHHhhCCC
Q 014942 267 YGHGVEDIRDWILTKLPL 284 (415)
Q Consensus 267 ~g~gv~eL~~~L~~~l~~ 284 (415)
+|.|+++++++|.+.+..
T Consensus 152 ~~~~v~e~f~~l~~~l~~ 169 (201)
T cd04107 152 EGINIEEAMRFLVKNILA 169 (201)
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999987754
No 69
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.85 E-value=1.5e-20 Score=165.18 Aligned_cols=154 Identities=18% Similarity=0.211 Sum_probs=103.3
Q ss_pred EEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeE--EEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhc
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRI--LGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~--~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (415)
+|+++|++|||||||+|+|++.++.. ...+....+.. ..........+.+|||||. +.+.. ....+++
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~-------~~~~~~~ 71 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFVS-KYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGH--PEYLE-------VRNEFYK 71 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC-CCCCccceeEEEEEEEECCeEEEEEEEECCcc--HHHHH-------HHHHHhc
Confidence 79999999999999999999987642 22222222221 2223345578999999994 33332 2344578
Q ss_pred ccceEEEEecCCCCC--chHHHHHHHHhcccC-----CCCCEEEEEeCCCCCChhH--HHHHHHHHhhcCCCccEEEccc
Q 014942 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHK-----DKLPILLVLNKKDLIKPGE--IAKKLEWYEKFTDVDEVIPVSA 265 (415)
Q Consensus 195 ~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~-----~~~piilV~NK~Dl~~~~~--~~~~~~~~~~~~~~~~i~~vSA 265 (415)
.+|++|+|+|.+++. .....|+..+.+... .+.|+++|+||+|+..... .......... .+ .+++++||
T Consensus 72 ~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-~~-~~~~~~Sa 149 (168)
T cd04119 72 DTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAES-KG-FKYFETSA 149 (168)
T ss_pred cCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHH-cC-CeEEEEEC
Confidence 999999999998653 334444444433221 4689999999999973221 2222222222 23 57999999
Q ss_pred CCCCCHHHHHHHHHhhC
Q 014942 266 KYGHGVEDIRDWILTKL 282 (415)
Q Consensus 266 ~~g~gv~eL~~~L~~~l 282 (415)
++|.|+++++++|.+.+
T Consensus 150 ~~~~gi~~l~~~l~~~l 166 (168)
T cd04119 150 CTGEGVNEMFQTLFSSI 166 (168)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999999998765
No 70
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.85 E-value=9.4e-21 Score=170.99 Aligned_cols=158 Identities=26% Similarity=0.380 Sum_probs=113.6
Q ss_pred ccEEEEEecCCCCHHHHHHHHhCCceee-----------------eeCCCCceEEeEEEEEe--CCCeeEEEEeCCCCch
Q 014942 115 SGYVAVLGKPNVGKSTLANQMIGQKLSI-----------------VTNKPQTTRHRILGICS--GPEYQMILYDTPGIIE 175 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~~~~~~~-----------------~~~~~~tt~~~~~~~~~--~~~~~l~liDtpG~~~ 175 (415)
...|+++|+.++|||||+++|++..... .....+.|.......+. ..+..+.|+||||+.
T Consensus 3 ~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~- 81 (188)
T PF00009_consen 3 IRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE- 81 (188)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH-
T ss_pred EEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc-
Confidence 4589999999999999999998543210 00112333333334444 678899999999952
Q ss_pred hhhhhHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHHHHHHHh---
Q 014942 176 KKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYE--- 252 (415)
Q Consensus 176 ~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~--- 252 (415)
. +...+..++..+|++|+|+|+.++........+..+.. .+.|+++|+||+|+.. .......+.+.
T Consensus 82 -~-------f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~--~~~p~ivvlNK~D~~~-~~~~~~~~~~~~~l 150 (188)
T PF00009_consen 82 -D-------FIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRE--LGIPIIVVLNKMDLIE-KELEEIIEEIKEKL 150 (188)
T ss_dssp -H-------HHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHH--TT-SEEEEEETCTSSH-HHHHHHHHHHHHHH
T ss_pred -c-------eeecccceecccccceeeeecccccccccccccccccc--cccceEEeeeeccchh-hhHHHHHHHHHHHh
Confidence 2 34445566899999999999999988888888877777 7899999999999983 33322222222
Q ss_pred --hc--C--CCccEEEcccCCCCCHHHHHHHHHhhCCC
Q 014942 253 --KF--T--DVDEVIPVSAKYGHGVEDIRDWILTKLPL 284 (415)
Q Consensus 253 --~~--~--~~~~i~~vSA~~g~gv~eL~~~L~~~l~~ 284 (415)
.. . ...+++++||++|.|+++|++.|.+.+|.
T Consensus 151 ~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P~ 188 (188)
T PF00009_consen 151 LKEYGENGEEIVPVIPISALTGDGIDELLEALVELLPS 188 (188)
T ss_dssp HHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS--
T ss_pred ccccccCccccceEEEEecCCCCCHHHHHHHHHHhCcC
Confidence 11 1 24689999999999999999999999873
No 71
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.85 E-value=1.8e-20 Score=164.07 Aligned_cols=151 Identities=19% Similarity=0.226 Sum_probs=100.4
Q ss_pred EEEEEecCCCCHHHHHHHHhCCcee--eeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhc
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQKLS--IVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~~~~--~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (415)
+|+++|.+|||||||+++|.+.... ...+..+.+. ..+...+..+.+|||||. ..+.. .+..++.
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~----~~~~~~~~~~~l~Dt~G~--~~~~~-------~~~~~~~ 67 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNV----ESFEKGNLSFTAFDMSGQ--GKYRG-------LWEHYYK 67 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccce----EEEEECCEEEEEEECCCC--HhhHH-------HHHHHHc
Confidence 4899999999999999999987532 2222333222 223456788999999994 33332 2445578
Q ss_pred ccceEEEEecCCCCCc--hHHHHHHHHhccc---CCCCCEEEEEeCCCCCChhHHHHHHHHHhh---cCCCccEEEcccC
Q 014942 195 NADCIVVLVDACKAPE--RIDEILEEGVGDH---KDKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVSAK 266 (415)
Q Consensus 195 ~aD~ii~VvD~~~~~~--~~~~~l~~~l~~~---~~~~piilV~NK~Dl~~~~~~~~~~~~~~~---~~~~~~i~~vSA~ 266 (415)
.+|++|+|+|++++.. ....++..+++.. ..+.|+++|+||+|+............+.. .....+++++||+
T Consensus 68 ~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~Sa~ 147 (162)
T cd04157 68 NIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGLENIKDKPWHIFASNAL 147 (162)
T ss_pred cCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhCCccccCceEEEEEeeCC
Confidence 9999999999987542 2233444433321 257999999999999754322222222211 1112358999999
Q ss_pred CCCCHHHHHHHHHh
Q 014942 267 YGHGVEDIRDWILT 280 (415)
Q Consensus 267 ~g~gv~eL~~~L~~ 280 (415)
+|.|+++++++|.+
T Consensus 148 ~g~gv~~~~~~l~~ 161 (162)
T cd04157 148 TGEGLDEGVQWLQA 161 (162)
T ss_pred CCCchHHHHHHHhc
Confidence 99999999999975
No 72
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.85 E-value=1.6e-20 Score=190.03 Aligned_cols=164 Identities=23% Similarity=0.241 Sum_probs=118.5
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhcc
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (415)
..|+|+|.||||||||+|+|++.+.. ++++|+||+.+..+.+...+.++.++||||+...... ...+...+...+..
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~akpk-IadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~--g~gLg~~fLrhier 236 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAAKPK-IADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASE--GKGLGLDFLRHIER 236 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcCCcc-ccccCcccccceEEEEEECCeEEEEEECCCCccccch--hhHHHHHHHHHHHh
Confidence 37999999999999999999998765 5889999999999999888889999999998532211 11122234445788
Q ss_pred cceEEEEecCCCC------CchHHH---HHHHHhcc--------cCCCCCEEEEEeCCCCCChhHHHHHH-HHHhhcCCC
Q 014942 196 ADCIVVLVDACKA------PERIDE---ILEEGVGD--------HKDKLPILLVLNKKDLIKPGEIAKKL-EWYEKFTDV 257 (415)
Q Consensus 196 aD~ii~VvD~~~~------~~~~~~---~l~~~l~~--------~~~~~piilV~NK~Dl~~~~~~~~~~-~~~~~~~~~ 257 (415)
||++|+|+|+++. ...... .+...... ...++|+|+|+||+|+.....+.+.. ..+... +
T Consensus 237 advLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l~~~-g- 314 (500)
T PRK12296 237 CAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPELEAR-G- 314 (500)
T ss_pred cCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHHHHc-C-
Confidence 9999999999742 122222 22222210 01468999999999997654443332 233322 2
Q ss_pred ccEEEcccCCCCCHHHHHHHHHhhCCC
Q 014942 258 DEVIPVSAKYGHGVEDIRDWILTKLPL 284 (415)
Q Consensus 258 ~~i~~vSA~~g~gv~eL~~~L~~~l~~ 284 (415)
.+++++||+++.|+++|+.+|.+.+..
T Consensus 315 ~~Vf~ISA~tgeGLdEL~~~L~ell~~ 341 (500)
T PRK12296 315 WPVFEVSAASREGLRELSFALAELVEE 341 (500)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 479999999999999999999988764
No 73
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.85 E-value=2.8e-20 Score=164.55 Aligned_cols=157 Identities=17% Similarity=0.167 Sum_probs=104.9
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeE--EEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhh
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRI--LGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~--~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~ 193 (415)
.+|+++|.+|||||||+++|++..+... ..+..+.+.. ...+......+.+||||| ++.+..+ +..++
T Consensus 6 ~ki~vvG~~~~GKTsli~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G--~~~~~~~-------~~~~~ 75 (170)
T cd04116 6 LKVILLGDGGVGKSSLMNRYVTNKFDTQ-LFHTIGVEFLNKDLEVDGHFVTLQIWDTAG--QERFRSL-------RTPFY 75 (170)
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCcC-cCCceeeEEEEEEEEECCeEEEEEEEeCCC--hHHHHHh-------HHHHh
Confidence 5899999999999999999998776421 1222222221 222344556789999999 4444333 33457
Q ss_pred cccceEEEEecCCCCC--chHHHHHHHHhccc----CCCCCEEEEEeCCCCCChhHHHHHHHHHhhcCCCccEEEcccCC
Q 014942 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH----KDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKY 267 (415)
Q Consensus 194 ~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~----~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~ 267 (415)
+.+|++++|+|.+++. .....|...++... ..+.|+++|+||+|+............+....+..+++++||++
T Consensus 76 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~ 155 (170)
T cd04116 76 RGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCRENGDYPYFETSAKD 155 (170)
T ss_pred cCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHHCCCCeEEEEECCC
Confidence 8999999999987653 44444444333221 14689999999999864322222223333333445799999999
Q ss_pred CCCHHHHHHHHHhhC
Q 014942 268 GHGVEDIRDWILTKL 282 (415)
Q Consensus 268 g~gv~eL~~~L~~~l 282 (415)
|.|+.++++.+++.+
T Consensus 156 ~~~v~~~~~~~~~~~ 170 (170)
T cd04116 156 ATNVAAAFEEAVRRV 170 (170)
T ss_pred CCCHHHHHHHHHhhC
Confidence 999999999998753
No 74
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.85 E-value=8.1e-21 Score=171.63 Aligned_cols=155 Identities=21% Similarity=0.207 Sum_probs=102.8
Q ss_pred EEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEE--EEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhc
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~--~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (415)
+|+++|.+|||||||+++|++..+. ...++|+...... .+......+.+|||||. ..+..+ ...+++
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~-------~~~~~~ 69 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFV--ETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQ--EEYTAL-------RDQWIR 69 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC--ccCCCchHhhEEEEEEECCEEEEEEEEECCCc--hhhHHH-------HHHHHH
Confidence 5899999999999999999987764 2233333222222 23333456899999994 444433 334578
Q ss_pred ccceEEEEecCCCCC--chHHHHHHHHhccc---CCCCCEEEEEeCCCCCChhHHHH-HHHHHhhcCCCccEEEcccCCC
Q 014942 195 NADCIVVLVDACKAP--ERIDEILEEGVGDH---KDKLPILLVLNKKDLIKPGEIAK-KLEWYEKFTDVDEVIPVSAKYG 268 (415)
Q Consensus 195 ~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~---~~~~piilV~NK~Dl~~~~~~~~-~~~~~~~~~~~~~i~~vSA~~g 268 (415)
.+|++|+|+|.++.. .....++..+.... ..+.|+++|+||+|+.....+.. ....+....+ .+++++||++|
T Consensus 70 ~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~-~~~~e~SAk~~ 148 (190)
T cd04144 70 EGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLG-CEFIEASAKTN 148 (190)
T ss_pred hCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhC-CEEEEecCCCC
Confidence 999999999997654 33334443332211 25689999999999964333211 1122222223 47999999999
Q ss_pred CCHHHHHHHHHhhCC
Q 014942 269 HGVEDIRDWILTKLP 283 (415)
Q Consensus 269 ~gv~eL~~~L~~~l~ 283 (415)
.|+++++++|++.+.
T Consensus 149 ~~v~~l~~~l~~~l~ 163 (190)
T cd04144 149 VNVERAFYTLVRALR 163 (190)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999998653
No 75
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.85 E-value=1.6e-20 Score=166.17 Aligned_cols=157 Identities=19% Similarity=0.199 Sum_probs=105.4
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCceeeeeC-CCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhc
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTN-KPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~~~~~~~-~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (415)
.+|+++|.+|||||||++++++..+..... ..+.+..............+.+|||||. ..+.. ....+++
T Consensus 5 ~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~-------~~~~~~~ 75 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQ--ESFRS-------ITRSYYR 75 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCc--HHHHH-------HHHHHhc
Confidence 489999999999999999999887643222 1122222222223344468999999993 33322 2445578
Q ss_pred ccceEEEEecCCCCC--chHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHH--HHHHHHHhhcCCCccEEEcccCCCCC
Q 014942 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI--AKKLEWYEKFTDVDEVIPVSAKYGHG 270 (415)
Q Consensus 195 ~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~i~~vSA~~g~g 270 (415)
.+|++|+|+|++++. .....|+.+..+...++.|+++|+||+|+.....+ ......... .+ .+++++||++|.|
T Consensus 76 ~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~-~~-~~~~e~Sa~~~~~ 153 (168)
T cd01866 76 GAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKE-HG-LIFMETSAKTASN 153 (168)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHH-cC-CEEEEEeCCCCCC
Confidence 999999999998643 33444444443332357899999999999743221 222222222 22 4799999999999
Q ss_pred HHHHHHHHHhhCC
Q 014942 271 VEDIRDWILTKLP 283 (415)
Q Consensus 271 v~eL~~~L~~~l~ 283 (415)
+++++.++.+.+.
T Consensus 154 i~~~~~~~~~~~~ 166 (168)
T cd01866 154 VEEAFINTAKEIY 166 (168)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988764
No 76
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.85 E-value=1.4e-20 Score=183.57 Aligned_cols=160 Identities=26% Similarity=0.351 Sum_probs=117.7
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCC-eeEEEEeCCCCchhhhh--hHhHHHHHHHHhh
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE-YQMILYDTPGIIEKKIH--MLDSMMMKNVRSA 192 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~-~~l~liDtpG~~~~~~~--~l~~~~~~~~~~~ 192 (415)
..|+|+|.||||||||+|+|.+.+.. ++.+|.||..+..+.+...+ .++.+|||||+...... .+. ..+...
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~-va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg----~~flrh 232 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPK-IADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLG----HRFLKH 232 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCcc-ccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHH----HHHHHH
Confidence 37999999999999999999987654 68889999988888877666 89999999998532211 232 233445
Q ss_pred hcccceEEEEecCCCC-----CchHHHHHHHHhccc---CCCCCEEEEEeCCCCCChhHHHHHHHHHhhcCCCccEEEcc
Q 014942 193 GINADCIVVLVDACKA-----PERIDEILEEGVGDH---KDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVS 264 (415)
Q Consensus 193 ~~~aD~ii~VvD~~~~-----~~~~~~~l~~~l~~~---~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vS 264 (415)
+..|+++|+|+|+++. .+.... +.+.+... ..++|+++|+||+|+..........+.+....+ .+++++|
T Consensus 233 ierad~ll~VvD~s~~~~~~~~e~l~~-l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~~~~-~~vi~iS 310 (329)
T TIGR02729 233 IERTRVLLHLIDISPLDGRDPIEDYEI-IRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELKKALG-KPVFPIS 310 (329)
T ss_pred HHhhCEEEEEEcCccccccCHHHHHHH-HHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHHHHcC-CcEEEEE
Confidence 6789999999999854 122222 22222221 146899999999999876555555555544333 4799999
Q ss_pred cCCCCCHHHHHHHHHhhC
Q 014942 265 AKYGHGVEDIRDWILTKL 282 (415)
Q Consensus 265 A~~g~gv~eL~~~L~~~l 282 (415)
|+++.|+++|+++|.+.+
T Consensus 311 Aktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 311 ALTGEGLDELLYALAELL 328 (329)
T ss_pred ccCCcCHHHHHHHHHHHh
Confidence 999999999999998765
No 77
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.85 E-value=3.2e-20 Score=162.87 Aligned_cols=151 Identities=19% Similarity=0.210 Sum_probs=101.6
Q ss_pred EEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhccc
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~a 196 (415)
+|+++|.+|||||||++++....+. ...| |+.... ..+......+.+|||||. ..+. ..+..++++|
T Consensus 2 kv~~~G~~~~GKTsli~~l~~~~~~--~~~p-t~g~~~-~~~~~~~~~~~l~D~~G~--~~~~-------~~~~~~~~~a 68 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLGEIV--TTIP-TIGFNV-ETVEYKNISFTVWDVGGQ--DKIR-------PLWRHYFQNT 68 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCc--ccCC-CCCcce-EEEEECCEEEEEEECCCC--HhHH-------HHHHHHhcCC
Confidence 7999999999999999999766653 2222 222212 234456789999999994 3322 2345568999
Q ss_pred ceEEEEecCCCCC--chHHHHHHHHhccc-CCCCCEEEEEeCCCCCChhHHHHHHHHHhh---cCCCccEEEcccCCCCC
Q 014942 197 DCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVSAKYGHG 270 (415)
Q Consensus 197 D~ii~VvD~~~~~--~~~~~~l~~~l~~~-~~~~piilV~NK~Dl~~~~~~~~~~~~~~~---~~~~~~i~~vSA~~g~g 270 (415)
|++|||+|+++.. .....++...+... ..+.|+++|+||+|+.+.....+....+.. ......++++||++|.|
T Consensus 69 d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~g 148 (159)
T cd04150 69 QGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLGLHSLRNRNWYIQATCATSGDG 148 (159)
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCCEEEEEeeCCCCCC
Confidence 9999999998643 34444555554321 146899999999999643222222222211 11223578999999999
Q ss_pred HHHHHHHHHh
Q 014942 271 VEDIRDWILT 280 (415)
Q Consensus 271 v~eL~~~L~~ 280 (415)
+++++++|.+
T Consensus 149 v~~~~~~l~~ 158 (159)
T cd04150 149 LYEGLDWLSN 158 (159)
T ss_pred HHHHHHHHhc
Confidence 9999999975
No 78
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.85 E-value=2.8e-20 Score=165.88 Aligned_cols=156 Identities=21% Similarity=0.221 Sum_probs=105.2
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~ 193 (415)
+..+|+++|.+|||||||+++|....+. ...| |+.... ......+..+.+|||||. ..+.. .+..++
T Consensus 12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~--~~~~-t~~~~~-~~~~~~~~~l~l~D~~G~--~~~~~-------~~~~~~ 78 (175)
T smart00177 12 KEMRILMVGLDAAGKTTILYKLKLGESV--TTIP-TIGFNV-ETVTYKNISFTVWDVGGQ--DKIRP-------LWRHYY 78 (175)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCC--CcCC-ccccce-EEEEECCEEEEEEECCCC--hhhHH-------HHHHHh
Confidence 3568999999999999999999765553 2222 222212 223446789999999994 33322 345558
Q ss_pred cccceEEEEecCCCCC--chHHHHHHHHhccc-CCCCCEEEEEeCCCCCChhHHHHHHHHHh---hcCCCccEEEcccCC
Q 014942 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYE---KFTDVDEVIPVSAKY 267 (415)
Q Consensus 194 ~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~-~~~~piilV~NK~Dl~~~~~~~~~~~~~~---~~~~~~~i~~vSA~~ 267 (415)
++||++|+|+|++++. .....++...+... ..+.|++||+||+|+.......+....+. .......++++||++
T Consensus 79 ~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~ 158 (175)
T smart00177 79 TNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTCATS 158 (175)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHhCccccCCCcEEEEEeeCCC
Confidence 9999999999998753 44455555554431 24689999999999975322222222221 111223577899999
Q ss_pred CCCHHHHHHHHHhhC
Q 014942 268 GHGVEDIRDWILTKL 282 (415)
Q Consensus 268 g~gv~eL~~~L~~~l 282 (415)
|.|++++++||.+.+
T Consensus 159 g~gv~e~~~~l~~~~ 173 (175)
T smart00177 159 GDGLYEGLTWLSNNL 173 (175)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998765
No 79
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.85 E-value=1.5e-20 Score=169.75 Aligned_cols=156 Identities=21% Similarity=0.180 Sum_probs=103.9
Q ss_pred EEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEE--EEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhc
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~--~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (415)
+|+++|.+|||||||+++|.+..+.. ....|....... ........+.+|||||. +.+..+. ..++.
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~--~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~--~~~~~l~-------~~~~~ 70 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQ--VYEPTVFENYVHDIFVDGLHIELSLWDTAGQ--EEFDRLR-------SLSYA 70 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC--ccCCcceeeeEEEEEECCEEEEEEEEECCCC--hhccccc-------ccccc
Confidence 79999999999999999999887742 222222111111 12333468899999994 4443332 23478
Q ss_pred ccceEEEEecCCCCC--chHH-HHHHHHhcccCCCCCEEEEEeCCCCCChhHHHHH-------------HHHHhhcCCCc
Q 014942 195 NADCIVVLVDACKAP--ERID-EILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKK-------------LEWYEKFTDVD 258 (415)
Q Consensus 195 ~aD~ii~VvD~~~~~--~~~~-~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~~-------------~~~~~~~~~~~ 258 (415)
.+|++|+|+|.++.. .... .|+..+ .....+.|+++|+||+|+......... ...+....+..
T Consensus 71 ~a~~~ilv~dv~~~~sf~~~~~~~~~~i-~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 149 (189)
T cd04134 71 DTDVIMLCFSVDSPDSLENVESKWLGEI-REHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINAL 149 (189)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHH-HHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCC
Confidence 999999999988754 2232 243333 332357999999999999754322211 11222223335
Q ss_pred cEEEcccCCCCCHHHHHHHHHhhCCC
Q 014942 259 EVIPVSAKYGHGVEDIRDWILTKLPL 284 (415)
Q Consensus 259 ~i~~vSA~~g~gv~eL~~~L~~~l~~ 284 (415)
++++|||++|.|++++|++|.+.+..
T Consensus 150 ~~~e~SAk~~~~v~e~f~~l~~~~~~ 175 (189)
T cd04134 150 RYLECSAKLNRGVNEAFTEAARVALN 175 (189)
T ss_pred EEEEccCCcCCCHHHHHHHHHHHHhc
Confidence 79999999999999999999987753
No 80
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.85 E-value=2.3e-20 Score=166.31 Aligned_cols=155 Identities=19% Similarity=0.155 Sum_probs=102.2
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEE--EEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhh
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRIL--GICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~--~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~ 193 (415)
.+|+++|.+|||||||+.++++..+. ..+..|...... ..+......+.+|||||. ..+..+ ...++
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~-------~~~~~ 70 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ--EDYDRL-------RPLSY 70 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC--CcCCCcceeeeEEEEEECCEEEEEEEEECCCc--hhhhhh-------hhhhc
Confidence 47999999999999999999987763 223333322222 223334467899999994 444333 23457
Q ss_pred cccceEEEEecCCCCC--chHHHHHHHHhcccCCCCCEEEEEeCCCCCChhH-H------------HHHHHHHhhcCCCc
Q 014942 194 INADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE-I------------AKKLEWYEKFTDVD 258 (415)
Q Consensus 194 ~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~-~------------~~~~~~~~~~~~~~ 258 (415)
..+|++|+|+|++++. ......+...+.....+.|+++|+||+|+..... . ......+....+..
T Consensus 71 ~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 150 (174)
T cd01871 71 PQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAV 150 (174)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCc
Confidence 8999999999998754 2332223333332235799999999999964221 1 11112222233445
Q ss_pred cEEEcccCCCCCHHHHHHHHHhh
Q 014942 259 EVIPVSAKYGHGVEDIRDWILTK 281 (415)
Q Consensus 259 ~i~~vSA~~g~gv~eL~~~L~~~ 281 (415)
++++|||++|.|++++|+.|++.
T Consensus 151 ~~~e~Sa~~~~~i~~~f~~l~~~ 173 (174)
T cd01871 151 KYLECSALTQKGLKTVFDEAIRA 173 (174)
T ss_pred EEEEecccccCCHHHHHHHHHHh
Confidence 89999999999999999999864
No 81
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.85 E-value=2.2e-20 Score=163.68 Aligned_cols=155 Identities=18% Similarity=0.196 Sum_probs=103.5
Q ss_pred EEEEEecCCCCHHHHHHHHhCCceeeee-CCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhcc
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQKLSIVT-NKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~~~~~~~-~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (415)
+|+++|++|||||||+++|++.++.... ...+.........+......+.+|||||. ..+.. .....++.
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~--~~~~~-------~~~~~~~~ 72 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQ--ERFRS-------VTRSYYRG 72 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcch--HHHHH-------hHHHHhcC
Confidence 7999999999999999999988764221 11111112222223334467899999994 33322 23455789
Q ss_pred cceEEEEecCCCCC--chHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHH--HHHHHHHhhcCCCccEEEcccCCCCCH
Q 014942 196 ADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI--AKKLEWYEKFTDVDEVIPVSAKYGHGV 271 (415)
Q Consensus 196 aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~i~~vSA~~g~gv 271 (415)
+|++++|+|++++. .....++.........+.|+++|+||+|+.....+ ........ ..+ .+++++||++|.|+
T Consensus 73 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~-~~~-~~~~~~Sa~~~~~i 150 (161)
T cd04113 73 AAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQ-ENG-LLFLETSALTGENV 150 (161)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHH-HcC-CEEEEEECCCCCCH
Confidence 99999999998754 33444444332222368899999999999753322 22222222 233 58999999999999
Q ss_pred HHHHHHHHhhC
Q 014942 272 EDIRDWILTKL 282 (415)
Q Consensus 272 ~eL~~~L~~~l 282 (415)
+++++++++.+
T Consensus 151 ~~~~~~~~~~~ 161 (161)
T cd04113 151 EEAFLKCARSI 161 (161)
T ss_pred HHHHHHHHHhC
Confidence 99999998753
No 82
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.85 E-value=3.4e-20 Score=162.15 Aligned_cols=152 Identities=20% Similarity=0.235 Sum_probs=101.4
Q ss_pred EEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhccc
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~a 196 (415)
+|+++|.+|||||||+++|.+..+....+..+.+ ...+.......+.+|||||. ..+ ...+..++..+
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~t~~~~---~~~~~~~~~~~l~i~D~~G~--~~~-------~~~~~~~~~~~ 68 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFN---VEMLQLEKHLSLTVWDVGGQ--EKM-------RTVWKCYLENT 68 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccccCccCcc---eEEEEeCCceEEEEEECCCC--HhH-------HHHHHHHhccC
Confidence 4899999999999999999998764322222211 12222234578999999995 222 22344557899
Q ss_pred ceEEEEecCCCCC--chHHHHHHHHhccc-CCCCCEEEEEeCCCCCChhHHHHHHHHHh--hcC--CCccEEEcccCCCC
Q 014942 197 DCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYE--KFT--DVDEVIPVSAKYGH 269 (415)
Q Consensus 197 D~ii~VvD~~~~~--~~~~~~l~~~l~~~-~~~~piilV~NK~Dl~~~~~~~~~~~~~~--~~~--~~~~i~~vSA~~g~ 269 (415)
|++|+|+|++++. .....++.+.++.. ..+.|+++|+||+|+.......+....+. ... ...+++++||++|.
T Consensus 69 ~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~ 148 (160)
T cd04156 69 DGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRDWYVQPCSAVTGE 148 (160)
T ss_pred CEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcCCcccCCCCcEEEEecccccCC
Confidence 9999999998764 33444555554431 15799999999999864322222222221 111 12368999999999
Q ss_pred CHHHHHHHHHh
Q 014942 270 GVEDIRDWILT 280 (415)
Q Consensus 270 gv~eL~~~L~~ 280 (415)
|+++++++|.+
T Consensus 149 gv~~~~~~i~~ 159 (160)
T cd04156 149 GLAEAFRKLAS 159 (160)
T ss_pred ChHHHHHHHhc
Confidence 99999999875
No 83
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.85 E-value=1.7e-20 Score=164.65 Aligned_cols=155 Identities=21% Similarity=0.187 Sum_probs=103.4
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEE--EeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhh
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~--~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~ 193 (415)
.+|+++|.+|||||||++++++..+.. ....|..+..... +......+.+|||||. +.+..+. ..++
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~~-------~~~~ 70 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIE--KYDPTIEDFYRKEIEVDSSPSVLEILDTAGT--EQFASMR-------DLYI 70 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC--CCCCchhheEEEEEEECCEEEEEEEEECCCc--ccccchH-------HHHH
Confidence 479999999999999999999887642 2223332222222 2333456889999994 4444442 3347
Q ss_pred cccceEEEEecCCCCC--chHHHHHHHHhccc-CCCCCEEEEEeCCCCCChhHHH-HHHHHHhhcCCCccEEEcccCCCC
Q 014942 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYGH 269 (415)
Q Consensus 194 ~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~-~~~~piilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~i~~vSA~~g~ 269 (415)
+++|++++|+|.++.. .....++..+.+.. ..+.|+++|+||+|+.....+. .....+....+ .+++++||++|.
T Consensus 71 ~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 149 (163)
T cd04176 71 KNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWG-CPFMETSAKSKT 149 (163)
T ss_pred hhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhC-CEEEEecCCCCC
Confidence 8999999999998754 34444444333321 1579999999999986433221 11222222223 478999999999
Q ss_pred CHHHHHHHHHhhC
Q 014942 270 GVEDIRDWILTKL 282 (415)
Q Consensus 270 gv~eL~~~L~~~l 282 (415)
|+++++.+|++.+
T Consensus 150 ~v~~l~~~l~~~l 162 (163)
T cd04176 150 MVNELFAEIVRQM 162 (163)
T ss_pred CHHHHHHHHHHhc
Confidence 9999999998765
No 84
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.85 E-value=2.9e-20 Score=167.80 Aligned_cols=157 Identities=16% Similarity=0.160 Sum_probs=107.5
Q ss_pred ccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEE--EeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhh
Q 014942 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~--~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~ 192 (415)
..+|+++|..|||||||+.+|.+..+.. ...+..+.+..... +......+.+|||||. +.+..+ +..+
T Consensus 6 ~~KivviG~~~vGKTsll~~~~~~~~~~-~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~--~~~~~l-------~~~~ 75 (189)
T cd04121 6 LLKFLLVGDSDVGKGEILASLQDGSTES-PYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQ--GRFCTI-------FRSY 75 (189)
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCcceeEEEEEEEEECCEEEEEEEEeCCCc--HHHHHH-------HHHH
Confidence 4599999999999999999999876531 11122222222222 2333468899999994 444433 3445
Q ss_pred hcccceEEEEecCCCCC--chHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHH-HHHHHHHhhcCCCccEEEcccCCCC
Q 014942 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGH 269 (415)
Q Consensus 193 ~~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g~ 269 (415)
++.+|++|+|+|.+++. .....|+.++... .++.|+|||+||+|+.....+ .+....+.+..+ .++++|||++|.
T Consensus 76 ~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~-~~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~-~~~~e~SAk~g~ 153 (189)
T cd04121 76 SRGAQGIILVYDITNRWSFDGIDRWIKEIDEH-APGVPKILVGNRLHLAFKRQVATEQAQAYAERNG-MTFFEVSPLCNF 153 (189)
T ss_pred hcCCCEEEEEEECcCHHHHHHHHHHHHHHHHh-CCCCCEEEEEECccchhccCCCHHHHHHHHHHcC-CEEEEecCCCCC
Confidence 78999999999998754 4455555554332 368999999999999653322 222233333333 479999999999
Q ss_pred CHHHHHHHHHhhCC
Q 014942 270 GVEDIRDWILTKLP 283 (415)
Q Consensus 270 gv~eL~~~L~~~l~ 283 (415)
||+++|++|++.+.
T Consensus 154 ~V~~~F~~l~~~i~ 167 (189)
T cd04121 154 NITESFTELARIVL 167 (189)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999998664
No 85
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.85 E-value=2.9e-20 Score=163.43 Aligned_cols=154 Identities=13% Similarity=0.149 Sum_probs=103.4
Q ss_pred EEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEe--CCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhc
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~--~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (415)
+|+++|++|||||||++++++..+.. ...+....+.....+. .....+.+|||||. ..+..+ ...++.
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~--~~~~~~-------~~~~~~ 71 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNEFHS-SHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQ--ERYQTI-------TKQYYR 71 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCC-CCCCceeeEEEEEEEEECCEEEEEEEEeCCCc--HhHHhh-------HHHHhc
Confidence 79999999999999999999887642 1222222222222222 23467889999994 344333 334578
Q ss_pred ccceEEEEecCCCCC--chHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHH-HHHHHHHhhcCCCccEEEcccCCCCCH
Q 014942 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGHGV 271 (415)
Q Consensus 195 ~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g~gv 271 (415)
.+|++++|+|.++.. .....|+.........+.|+++|+||+|+.....+ ......+.+..+ .+++++||++|.|+
T Consensus 72 ~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~-~~~~e~Sa~~~~~v 150 (161)
T cd04117 72 RAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYG-MDFFETSACTNSNI 150 (161)
T ss_pred CCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcC-CEEEEEeCCCCCCH
Confidence 999999999988653 34444444433322246899999999999654332 122233333333 57999999999999
Q ss_pred HHHHHHHHhh
Q 014942 272 EDIRDWILTK 281 (415)
Q Consensus 272 ~eL~~~L~~~ 281 (415)
+++|.+|.+.
T Consensus 151 ~~~f~~l~~~ 160 (161)
T cd04117 151 KESFTRLTEL 160 (161)
T ss_pred HHHHHHHHhh
Confidence 9999999875
No 86
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.85 E-value=4.4e-20 Score=165.26 Aligned_cols=157 Identities=25% Similarity=0.287 Sum_probs=106.7
Q ss_pred CCCCccEEEEEecCCCCHHHHHHHHhCCc-eeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhh-hHhHHHHHH
Q 014942 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQK-LSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIH-MLDSMMMKN 188 (415)
Q Consensus 111 ~~~~~~~V~ivG~~~vGKSSLln~l~~~~-~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~-~l~~~~~~~ 188 (415)
|..+.++|+|+|++|+|||||+|+|++.. ...++..+++|.+....... ..+.+|||||+...... .....+...
T Consensus 14 ~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~---~~~~liDtpG~~~~~~~~~~~~~~~~~ 90 (179)
T TIGR03598 14 PPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVN---DGFRLVDLPGYGYAKVSKEEKEKWQKL 90 (179)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeC---CcEEEEeCCCCccccCChhHHHHHHHH
Confidence 34567799999999999999999999986 45567778888765543332 37999999997421100 011111111
Q ss_pred HHhhh---cccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHHH----HHHHhhcCCCccEE
Q 014942 189 VRSAG---INADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKK----LEWYEKFTDVDEVI 261 (415)
Q Consensus 189 ~~~~~---~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~~----~~~~~~~~~~~~i~ 261 (415)
...++ ..+|++++|+|++++.......+...+.. .+.|+++|+||+|+......... .+.+.......+++
T Consensus 91 ~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~--~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~v~ 168 (179)
T TIGR03598 91 IEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRE--RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPSVQ 168 (179)
T ss_pred HHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHH--cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCceE
Confidence 22222 35689999999998777666666666655 67999999999999865433322 23333332234799
Q ss_pred EcccCCCCCHH
Q 014942 262 PVSAKYGHGVE 272 (415)
Q Consensus 262 ~vSA~~g~gv~ 272 (415)
++||++|+|++
T Consensus 169 ~~Sa~~g~gi~ 179 (179)
T TIGR03598 169 LFSSLKKTGID 179 (179)
T ss_pred EEECCCCCCCC
Confidence 99999999974
No 87
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.85 E-value=1.6e-20 Score=166.67 Aligned_cols=154 Identities=19% Similarity=0.185 Sum_probs=102.1
Q ss_pred EEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEE--EeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhcc
Q 014942 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (415)
Q Consensus 118 V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~--~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (415)
|+|+|.+|||||||++++.+..+.. .+..+........ +......+.+|||||. ..+..+. ..++..
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~~-------~~~~~~ 69 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPE--DYVPTVFENYSADVEVDGKPVELGLWDTAGQ--EDYDRLR-------PLSYPD 69 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCC--CCCCcEEeeeeEEEEECCEEEEEEEEECCCC--cccchhc-------hhhcCC
Confidence 5899999999999999999987642 2222332222222 2333457899999994 3443332 234789
Q ss_pred cceEEEEecCCCCC--chHHHHHHHHhcccCCCCCEEEEEeCCCCCChhH-H------------HHHHHHHhhcCCCccE
Q 014942 196 ADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE-I------------AKKLEWYEKFTDVDEV 260 (415)
Q Consensus 196 aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~-~------------~~~~~~~~~~~~~~~i 260 (415)
+|++|+|+|.++.. ......+...+.....+.|+++|+||+|+..... . ......+....+..++
T Consensus 70 ~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 149 (174)
T smart00174 70 TDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKY 149 (174)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEE
Confidence 99999999998653 3332223333333336899999999999965321 0 0111223333444579
Q ss_pred EEcccCCCCCHHHHHHHHHhhC
Q 014942 261 IPVSAKYGHGVEDIRDWILTKL 282 (415)
Q Consensus 261 ~~vSA~~g~gv~eL~~~L~~~l 282 (415)
+++||++|.|++++++.|.+.+
T Consensus 150 ~e~Sa~~~~~v~~lf~~l~~~~ 171 (174)
T smart00174 150 LECSALTQEGVREVFEEAIRAA 171 (174)
T ss_pred EEecCCCCCCHHHHHHHHHHHh
Confidence 9999999999999999998765
No 88
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.84 E-value=2.8e-20 Score=167.05 Aligned_cols=159 Identities=23% Similarity=0.289 Sum_probs=105.6
Q ss_pred EEEEEecCCCCHHHHHHHHhCCceeeeeCCCCce-EEeEEEE--EeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhh
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTT-RHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt-~~~~~~~--~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~ 193 (415)
+|+++|.+|||||||++++++..+. ..+..|. .+..... .......+.+|||+| ++.+..+ +..++
T Consensus 2 Ki~vlG~~~vGKTsLi~~~~~~~f~--~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G--~~~~~~~-------~~~~~ 70 (182)
T cd04128 2 KIGLLGDAQIGKTSLMVKYVEGEFD--EDYIQTLGVNFMEKTISIRGTEITFSIWDLGG--QREFINM-------LPLVC 70 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC--CCCCCccceEEEEEEEEECCEEEEEEEEeCCC--chhHHHh-------hHHHC
Confidence 7999999999999999999988764 2222232 2222222 233346789999999 4444333 33458
Q ss_pred cccceEEEEecCCCCC--chHHHHHHHHhcccCCCCCEEEEEeCCCCCCh----h--HHHHHHHHHhhcCCCccEEEccc
Q 014942 194 INADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKP----G--EIAKKLEWYEKFTDVDEVIPVSA 265 (415)
Q Consensus 194 ~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~----~--~~~~~~~~~~~~~~~~~i~~vSA 265 (415)
+++|++++|+|+++.. .....|+....+......| ++|+||+|+... . .+......+....+ .+++++||
T Consensus 71 ~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~-~~~~e~SA 148 (182)
T cd04128 71 NDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMK-APLIFCST 148 (182)
T ss_pred cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcC-CEEEEEeC
Confidence 8999999999998754 3333455544332224456 688999999521 1 12222333333334 58999999
Q ss_pred CCCCCHHHHHHHHHhhCCCCCCC
Q 014942 266 KYGHGVEDIRDWILTKLPLGPAY 288 (415)
Q Consensus 266 ~~g~gv~eL~~~L~~~l~~~~~~ 288 (415)
++|.|++++|++|.+.+..-|..
T Consensus 149 k~g~~v~~lf~~l~~~l~~~~~~ 171 (182)
T cd04128 149 SHSINVQKIFKIVLAKAFDLPLT 171 (182)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999887654433
No 89
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.84 E-value=5.9e-20 Score=164.80 Aligned_cols=157 Identities=17% Similarity=0.190 Sum_probs=106.6
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~ 193 (415)
+..+|+++|.+|||||||+++|....+.. ..|..... ...+...+..+.+|||||. ..+. ..+..++
T Consensus 16 ~~~ki~ivG~~~~GKTsl~~~l~~~~~~~--~~pt~g~~--~~~~~~~~~~~~i~D~~Gq--~~~~-------~~~~~~~ 82 (181)
T PLN00223 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT--TIPTIGFN--VETVEYKNISFTVWDVGGQ--DKIR-------PLWRHYF 82 (181)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCcc--ccCCccee--EEEEEECCEEEEEEECCCC--HHHH-------HHHHHHh
Confidence 45689999999999999999998766532 22222222 2234556789999999993 3333 2355568
Q ss_pred cccceEEEEecCCCCC--chHHHHHHHHhcc-cCCCCCEEEEEeCCCCCChhHHHHHHHHHhhc---CCCccEEEcccCC
Q 014942 194 INADCIVVLVDACKAP--ERIDEILEEGVGD-HKDKLPILLVLNKKDLIKPGEIAKKLEWYEKF---TDVDEVIPVSAKY 267 (415)
Q Consensus 194 ~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~-~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~---~~~~~i~~vSA~~ 267 (415)
+++|++|+|+|+++.. .....++...+.. ...+.|++||+||+|+.+.....+....+... .....++++||++
T Consensus 83 ~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~ 162 (181)
T PLN00223 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATS 162 (181)
T ss_pred ccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCceEEEeccCCC
Confidence 9999999999998653 3333444444432 12478999999999997654433333333211 1112467899999
Q ss_pred CCCHHHHHHHHHhhCC
Q 014942 268 GHGVEDIRDWILTKLP 283 (415)
Q Consensus 268 g~gv~eL~~~L~~~l~ 283 (415)
|+||.+++++|.+.+.
T Consensus 163 g~gv~e~~~~l~~~~~ 178 (181)
T PLN00223 163 GEGLYEGLDWLSNNIA 178 (181)
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999988764
No 90
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.84 E-value=1.2e-20 Score=167.28 Aligned_cols=159 Identities=30% Similarity=0.356 Sum_probs=109.9
Q ss_pred EEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCC-CeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhcccce
Q 014942 120 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP-EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADC 198 (415)
Q Consensus 120 ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~-~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD~ 198 (415)
++|++|||||||+|+|.+.+. .+...+++|.......+... +..+.+|||||+..... . .+.+...+...+..+|+
T Consensus 1 iiG~~~~GKStll~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~-~-~~~~~~~~~~~~~~~d~ 77 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP-KVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGAS-E-GRGLGNQFLAHIRRADA 77 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc-cccCCCceeecCcceEEEcCCCCeEEEEeccccchhhh-c-CCCccHHHHHHHhccCE
Confidence 589999999999999999876 45677888887777666666 88999999999742111 0 11112233445678999
Q ss_pred EEEEecCCCCC-----c---hHHHHHHHHhccc-------CCCCCEEEEEeCCCCCChhHHHHHHHHHhhcCCCccEEEc
Q 014942 199 IVVLVDACKAP-----E---RIDEILEEGVGDH-------KDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPV 263 (415)
Q Consensus 199 ii~VvD~~~~~-----~---~~~~~l~~~l~~~-------~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~v 263 (415)
+++|+|+++.. . ....+........ ..+.|+++|+||+|+....................+++++
T Consensus 78 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (176)
T cd01881 78 ILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPI 157 (176)
T ss_pred EEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEE
Confidence 99999998762 1 1222222222111 1368999999999998665544332112222344579999
Q ss_pred ccCCCCCHHHHHHHHHhh
Q 014942 264 SAKYGHGVEDIRDWILTK 281 (415)
Q Consensus 264 SA~~g~gv~eL~~~L~~~ 281 (415)
||++|.|+++++++|...
T Consensus 158 Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 158 SAKTEEGLDELIRAIYEL 175 (176)
T ss_pred ehhhhcCHHHHHHHHHhh
Confidence 999999999999999764
No 91
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=2.4e-20 Score=162.65 Aligned_cols=161 Identities=19% Similarity=0.172 Sum_probs=119.6
Q ss_pred ccEEEEEecCCCCHHHHHHHHhCCceeee-eCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhh
Q 014942 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIV-TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~~~~~~~~-~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~ 193 (415)
..+|+|+|.+|||||.|+.+|.+..+... ..+.|.........+.....++.+|||+| +++++. .+.+++
T Consensus 9 lFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAG--QERFrt-------it~syY 79 (205)
T KOG0084|consen 9 LFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAG--QERFRT-------ITSSYY 79 (205)
T ss_pred EEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccc--cHHHhh-------hhHhhc
Confidence 45899999999999999999999887521 12222222222333556667899999999 666653 367779
Q ss_pred cccceEEEEecCCCC--CchHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHHH-HHHHhhcCCCccEEEcccCCCCC
Q 014942 194 INADCIVVLVDACKA--PERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKK-LEWYEKFTDVDEVIPVSAKYGHG 270 (415)
Q Consensus 194 ~~aD~ii~VvD~~~~--~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~~-~~~~~~~~~~~~i~~vSA~~g~g 270 (415)
++|++||+|+|.++. +.....|+.+.-+....+.|.++|+||||+.....+... .+.+....+...++++||+.+.|
T Consensus 80 R~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~N 159 (205)
T KOG0084|consen 80 RGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTN 159 (205)
T ss_pred cCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccC
Confidence 999999999999864 467778888776665577899999999999866544322 23454444553499999999999
Q ss_pred HHHHHHHHHhhCCC
Q 014942 271 VEDIRDWILTKLPL 284 (415)
Q Consensus 271 v~eL~~~L~~~l~~ 284 (415)
|++.|..|...+..
T Consensus 160 Ve~~F~~la~~lk~ 173 (205)
T KOG0084|consen 160 VEDAFLTLAKELKQ 173 (205)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999876643
No 92
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.84 E-value=4e-20 Score=166.36 Aligned_cols=157 Identities=20% Similarity=0.175 Sum_probs=104.6
Q ss_pred EEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEe---CCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhh
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS---GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~---~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~ 193 (415)
+|+++|.+|||||||+++|++..+. ..+.++........+. .....+.+|||||. +.+..+ ...++
T Consensus 2 ki~vvG~~~vGKTsli~~l~~~~~~--~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~--~~~~~~-------~~~~~ 70 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQGKFP--EEYVPTVFENYVTNIQGPNGKIIELALWDTAGQ--EEYDRL-------RPLSY 70 (187)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCC--CCCCCeeeeeeEEEEEecCCcEEEEEEEECCCc--hhHHHH-------HHHhC
Confidence 7999999999999999999988764 2333333322222222 33457899999994 443333 33347
Q ss_pred cccceEEEEecCCCCC--chHHHHHHHHhcccCCCCCEEEEEeCCCCCChhH-----HHHHHHHHhhcCCCccEEEcccC
Q 014942 194 INADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE-----IAKKLEWYEKFTDVDEVIPVSAK 266 (415)
Q Consensus 194 ~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~-----~~~~~~~~~~~~~~~~i~~vSA~ 266 (415)
..+|++|+|+|+++.. ......+...+.....+.|+++|+||+|+..... .......+....+..+++++||+
T Consensus 71 ~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 150 (187)
T cd04132 71 PDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAK 150 (187)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCC
Confidence 8999999999998654 2222222222222235789999999999864321 11222233333344479999999
Q ss_pred CCCCHHHHHHHHHhhCCC
Q 014942 267 YGHGVEDIRDWILTKLPL 284 (415)
Q Consensus 267 ~g~gv~eL~~~L~~~l~~ 284 (415)
+|.|+++++..|.+.+..
T Consensus 151 ~~~~v~~~f~~l~~~~~~ 168 (187)
T cd04132 151 TMENVEEVFDTAIEEALK 168 (187)
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 999999999999987754
No 93
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.84 E-value=2.4e-20 Score=162.42 Aligned_cols=156 Identities=26% Similarity=0.310 Sum_probs=107.5
Q ss_pred EEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhcccceE
Q 014942 120 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCI 199 (415)
Q Consensus 120 ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD~i 199 (415)
++|++|||||||+|+|.+... .++..+++|.......+..++..+.+|||||+...........+....... ..+|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~-~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQ-KVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLG-EKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcc-cccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcC-CCCcEE
Confidence 589999999999999999863 356778888877666677777899999999964322111111222222111 589999
Q ss_pred EEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHHHHHHHhhcCCCccEEEcccCCCCCHHHHHHHHH
Q 014942 200 VVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWIL 279 (415)
Q Consensus 200 i~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gv~eL~~~L~ 279 (415)
++|+|+++... ...++. .+.. .++|+++|+||+|+.....+......+....+ .+++++||.+|.|+++++++|.
T Consensus 79 i~v~d~~~~~~-~~~~~~-~~~~--~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~-~~~~~iSa~~~~~~~~l~~~l~ 153 (158)
T cd01879 79 VNVVDATNLER-NLYLTL-QLLE--LGLPVVVALNMIDEAEKRGIKIDLDKLSELLG-VPVVPTSARKGEGIDELKDAIA 153 (158)
T ss_pred EEEeeCCcchh-HHHHHH-HHHH--cCCCEEEEEehhhhcccccchhhHHHHHHhhC-CCeEEEEccCCCCHHHHHHHHH
Confidence 99999986432 222222 2333 57899999999999765433322333333223 4799999999999999999998
Q ss_pred hhC
Q 014942 280 TKL 282 (415)
Q Consensus 280 ~~l 282 (415)
+.+
T Consensus 154 ~~~ 156 (158)
T cd01879 154 ELA 156 (158)
T ss_pred HHh
Confidence 764
No 94
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.84 E-value=3e-20 Score=167.52 Aligned_cols=158 Identities=16% Similarity=0.154 Sum_probs=104.5
Q ss_pred EEEEEecCCCCHHHHHHHHhCCceee-eeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhcc
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQKLSI-VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~~~~~-~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (415)
+|+++|.+|||||||+++|.+..+.. .....+.+.......+......+.+|||||. ..+.. .+...++.
T Consensus 2 ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~--~~~~~-------~~~~~~~~ 72 (188)
T cd04125 2 KVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQ--ERFRS-------LNNSYYRG 72 (188)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCc--HHHHh-------hHHHHccC
Confidence 79999999999999999999887742 1112222221122223334567899999994 33332 23445789
Q ss_pred cceEEEEecCCCCC--chHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHH-HHHHHHhhcCCCccEEEcccCCCCCHH
Q 014942 196 ADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYGHGVE 272 (415)
Q Consensus 196 aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~i~~vSA~~g~gv~ 272 (415)
+|++|+|+|++++. .....|+...........|+++|+||+|+.....+. .....+....+. +++++||++|.|++
T Consensus 73 ~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~evSa~~~~~i~ 151 (188)
T cd04125 73 AHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNI-PFFETSAKQSINVE 151 (188)
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCC-eEEEEeCCCCCCHH
Confidence 99999999998654 333344444333222468999999999997543221 112222222333 79999999999999
Q ss_pred HHHHHHHhhCCC
Q 014942 273 DIRDWILTKLPL 284 (415)
Q Consensus 273 eL~~~L~~~l~~ 284 (415)
+++++|.+.+..
T Consensus 152 ~~f~~l~~~~~~ 163 (188)
T cd04125 152 EAFILLVKLIIK 163 (188)
T ss_pred HHHHHHHHHHHH
Confidence 999999987653
No 95
>PTZ00369 Ras-like protein; Provisional
Probab=99.84 E-value=2.6e-20 Score=168.18 Aligned_cols=159 Identities=19% Similarity=0.175 Sum_probs=105.7
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEE--EEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~--~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~ 191 (415)
...+|+++|.+|||||||++++.+..+. .....|....... .+......+.+|||||. ..+..+ +..
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~l-------~~~ 72 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFIQNHFI--DEYDPTIEDSYRKQCVIDEETCLLDILDTAGQ--EEYSAM-------RDQ 72 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCC--cCcCCchhhEEEEEEEECCEEEEEEEEeCCCC--ccchhh-------HHH
Confidence 3469999999999999999999987763 2222222222222 23444567889999994 344433 334
Q ss_pred hhcccceEEEEecCCCCC--chHHHHHHHHhccc-CCCCCEEEEEeCCCCCChhHHHH-HHHHHhhcCCCccEEEcccCC
Q 014942 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAK-KLEWYEKFTDVDEVIPVSAKY 267 (415)
Q Consensus 192 ~~~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~-~~~~piilV~NK~Dl~~~~~~~~-~~~~~~~~~~~~~i~~vSA~~ 267 (415)
+++.+|++++|+|++++. .....|+..+.+.. ..+.|+++|+||+|+.....+.. ....+....+ .+++++||++
T Consensus 73 ~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~-~~~~e~Sak~ 151 (189)
T PTZ00369 73 YMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFG-IPFLETSAKQ 151 (189)
T ss_pred HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhC-CEEEEeeCCC
Confidence 578999999999998754 33444444333321 15789999999999864332211 1112222222 4799999999
Q ss_pred CCCHHHHHHHHHhhCCC
Q 014942 268 GHGVEDIRDWILTKLPL 284 (415)
Q Consensus 268 g~gv~eL~~~L~~~l~~ 284 (415)
|.|+++++++|++.+..
T Consensus 152 ~~gi~~~~~~l~~~l~~ 168 (189)
T PTZ00369 152 RVNVDEAFYELVREIRK 168 (189)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999987753
No 96
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.84 E-value=4.3e-20 Score=161.83 Aligned_cols=155 Identities=20% Similarity=0.199 Sum_probs=103.9
Q ss_pred EEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEe--CCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhc
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~--~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (415)
+|+++|++|||||||+++|++.++.. ...+..+.......+. .....+.+|||||. ..+.. ....++.
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~--~~~~~-------~~~~~~~ 71 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDGKFSE-QYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQ--ERFRS-------ITSSYYR 71 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC-CCCCceeeEEEEEEEEECCEEEEEEEEECCCh--HHHHH-------HHHHHhC
Confidence 79999999999999999999887632 2222222222222222 23357899999993 33332 2344578
Q ss_pred ccceEEEEecCCCCC--chHHHHHHHHhcccCCCCCEEEEEeCCCCCChhH--HHHHHHHHhhcCCCccEEEcccCCCCC
Q 014942 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE--IAKKLEWYEKFTDVDEVIPVSAKYGHG 270 (415)
Q Consensus 195 ~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~--~~~~~~~~~~~~~~~~i~~vSA~~g~g 270 (415)
.+|++++|+|++++. .....|+.........+.|+++|+||+|+..... ...... +....+ .+++++||++|.|
T Consensus 72 ~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~-~~~~~~-~~~~e~Sa~~~~~ 149 (164)
T smart00175 72 GAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEA-FAEEHG-LPFFETSAKTNTN 149 (164)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHH-HHHHcC-CeEEEEeCCCCCC
Confidence 999999999998754 2333344443333225799999999999875322 222222 223333 4799999999999
Q ss_pred HHHHHHHHHhhCC
Q 014942 271 VEDIRDWILTKLP 283 (415)
Q Consensus 271 v~eL~~~L~~~l~ 283 (415)
+++++++|.+.+.
T Consensus 150 i~~l~~~i~~~~~ 162 (164)
T smart00175 150 VEEAFEELAREIL 162 (164)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998764
No 97
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.84 E-value=5.4e-20 Score=165.27 Aligned_cols=161 Identities=18% Similarity=0.200 Sum_probs=103.5
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEE-EeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI-CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~-~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~ 192 (415)
+..+|+++|.+|||||||++++.+..+....+..+.+....... ....+..+.+|||||. ..+.. .+..+
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~--~~~~~-------~~~~~ 72 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQ--EKLRP-------LWKSY 72 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCcCCccccceeEEEeeccCCCceEEEEEECCCc--HhHHH-------HHHHH
Confidence 45689999999999999999999877642211111122111111 1235678999999994 33322 24455
Q ss_pred hcccceEEEEecCCCCC--chHHHHHHHHhccc-CCCCCEEEEEeCCCCCChhHHHHHHHHHh--hcC--CCccEEEccc
Q 014942 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYE--KFT--DVDEVIPVSA 265 (415)
Q Consensus 193 ~~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~-~~~~piilV~NK~Dl~~~~~~~~~~~~~~--~~~--~~~~i~~vSA 265 (415)
++.+|++|+|+|++++. .....++.+..... ..+.|+++|+||+|+............+. ... ...+++++||
T Consensus 73 ~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA 152 (183)
T cd04152 73 TRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLALHELSASTPWHVQPACA 152 (183)
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHHHHHhCccccCCCCceEEEEeec
Confidence 78999999999998752 22333333333221 15789999999999864322222222211 111 1246899999
Q ss_pred CCCCCHHHHHHHHHhhCC
Q 014942 266 KYGHGVEDIRDWILTKLP 283 (415)
Q Consensus 266 ~~g~gv~eL~~~L~~~l~ 283 (415)
++|.|+++++++|.+.+.
T Consensus 153 ~~~~gi~~l~~~l~~~l~ 170 (183)
T cd04152 153 IIGEGLQEGLEKLYEMIL 170 (183)
T ss_pred ccCCCHHHHHHHHHHHHH
Confidence 999999999999998774
No 98
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.84 E-value=4.2e-20 Score=165.86 Aligned_cols=156 Identities=17% Similarity=0.157 Sum_probs=106.0
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEE--EEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~--~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~ 191 (415)
...+|+++|.+|||||||+++++...+. ..+.+|....... .+......+.+|||+| ++.+..+. ..
T Consensus 4 ~~~KivvvGd~~vGKTsli~~~~~~~f~--~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG--~e~~~~~~-------~~ 72 (182)
T cd04172 4 VKCKIVVVGDSQCGKTALLHVFAKDCFP--ENYVPTVFENYTASFEIDTQRIELSLWDTSG--SPYYDNVR-------PL 72 (182)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCCC--CccCCceeeeeEEEEEECCEEEEEEEEECCC--chhhHhhh-------hh
Confidence 3458999999999999999999988764 2333333222222 2334456799999999 45554442 34
Q ss_pred hhcccceEEEEecCCCCC--chH-HHHHHHHhcccCCCCCEEEEEeCCCCCCh------------hHH-HHHHHHHhhcC
Q 014942 192 AGINADCIVVLVDACKAP--ERI-DEILEEGVGDHKDKLPILLVLNKKDLIKP------------GEI-AKKLEWYEKFT 255 (415)
Q Consensus 192 ~~~~aD~ii~VvD~~~~~--~~~-~~~l~~~l~~~~~~~piilV~NK~Dl~~~------------~~~-~~~~~~~~~~~ 255 (415)
+++++|++|+|+|.+++. ... ..|+. .++...++.|++||+||+|+... ..+ .+....+.+..
T Consensus 73 ~~~~ad~~ilvyDit~~~Sf~~~~~~w~~-~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~ 151 (182)
T cd04172 73 SYPDSDAVLICFDISRPETLDSVLKKWKG-EIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQI 151 (182)
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHH-HHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHc
Confidence 588999999999998754 333 23333 33333367999999999998531 111 12233344444
Q ss_pred CCccEEEcccCCCCC-HHHHHHHHHhh
Q 014942 256 DVDEVIPVSAKYGHG-VEDIRDWILTK 281 (415)
Q Consensus 256 ~~~~i~~vSA~~g~g-v~eL~~~L~~~ 281 (415)
+..++++|||++|.| |+++|..+.+.
T Consensus 152 ~~~~~~E~SAk~~~n~v~~~F~~~~~~ 178 (182)
T cd04172 152 GAATYIECSALQSENSVRDIFHVATLA 178 (182)
T ss_pred CCCEEEECCcCCCCCCHHHHHHHHHHH
Confidence 445899999999998 99999998874
No 99
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.84 E-value=5.2e-20 Score=161.74 Aligned_cols=154 Identities=19% Similarity=0.189 Sum_probs=102.5
Q ss_pred EEEEEecCCCCHHHHHHHHhCCceeeeeC-CCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhcc
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTN-KPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~~~~~~~~-~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (415)
+|+++|.+|||||||++++++..+..... ..+.+.......+......+.+|||||. +.+.. .+..+++.
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~-------~~~~~~~~ 72 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQ--ERFQT-------MHASYYHK 72 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCc--hhhhh-------hhHHHhCC
Confidence 79999999999999999999877642111 1111211222223444567899999994 44333 24455889
Q ss_pred cceEEEEecCCCCC--chHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHHHHHHHhhcCCCccEEEcccCCCCCHHH
Q 014942 196 ADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVED 273 (415)
Q Consensus 196 aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gv~e 273 (415)
+|++|+|+|++++. .....|+..+ +....+.|+++|+||+|+.... ...... +.... ..+++++||++|.|+++
T Consensus 73 ~d~~i~v~d~~~~~s~~~~~~~~~~i-~~~~~~~p~ivv~nK~Dl~~~~-~~~~~~-~~~~~-~~~~~~~Sa~~~~gv~~ 148 (161)
T cd04124 73 AHACILVFDVTRKITYKNLSKWYEEL-REYRPEIPCIVVANKIDLDPSV-TQKKFN-FAEKH-NLPLYYVSAADGTNVVK 148 (161)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHH-HHhCCCCcEEEEEECccCchhH-HHHHHH-HHHHc-CCeEEEEeCCCCCCHHH
Confidence 99999999998654 2233344333 3322578999999999985321 122222 22222 24799999999999999
Q ss_pred HHHHHHhhCC
Q 014942 274 IRDWILTKLP 283 (415)
Q Consensus 274 L~~~L~~~l~ 283 (415)
+++.+.+.+.
T Consensus 149 l~~~l~~~~~ 158 (161)
T cd04124 149 LFQDAIKLAV 158 (161)
T ss_pred HHHHHHHHHH
Confidence 9999987664
No 100
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.84 E-value=6.3e-20 Score=163.41 Aligned_cols=153 Identities=18% Similarity=0.210 Sum_probs=104.1
Q ss_pred ccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhc
Q 014942 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (415)
..+|+++|++|||||||+++|.+..+....+..+.+ ...+...+..+.+|||||. ..+ ...+..++.
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~~~~t~~~~----~~~~~~~~~~~~l~D~~G~--~~~-------~~~~~~~~~ 81 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSN----VEEIVYKNIRFLMWDIGGQ--ESL-------RSSWNTYYT 81 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccc----eEEEEECCeEEEEEECCCC--HHH-------HHHHHHHhh
Confidence 458999999999999999999887664322222222 2234455789999999995 322 223445678
Q ss_pred ccceEEEEecCCCCC--chHHHHHHHHhccc-CCCCCEEEEEeCCCCCChhHHHHHHHHHhh---cCCCccEEEcccCCC
Q 014942 195 NADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVSAKYG 268 (415)
Q Consensus 195 ~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~-~~~~piilV~NK~Dl~~~~~~~~~~~~~~~---~~~~~~i~~vSA~~g 268 (415)
.+|++++|+|++++. .....++.+.+... ..+.|+++|+||+|+.......+....+.. .....+++++||++|
T Consensus 82 ~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g 161 (174)
T cd04153 82 NTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCCALTG 161 (174)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEecccCCC
Confidence 999999999998753 23334455554331 146899999999998753222222232221 112246899999999
Q ss_pred CCHHHHHHHHHh
Q 014942 269 HGVEDIRDWILT 280 (415)
Q Consensus 269 ~gv~eL~~~L~~ 280 (415)
.|+++++++|.+
T Consensus 162 ~gi~e~~~~l~~ 173 (174)
T cd04153 162 EGLPEGLDWIAS 173 (174)
T ss_pred CCHHHHHHHHhc
Confidence 999999999975
No 101
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.84 E-value=8.3e-21 Score=201.88 Aligned_cols=204 Identities=19% Similarity=0.224 Sum_probs=137.4
Q ss_pred CCCccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHh
Q 014942 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (415)
Q Consensus 112 ~~~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~ 191 (415)
..|++.|+|+|++|+|||||+++|.+.++. ....++.|.+.....+.+.+..+.||||||+ ..|..+ +..
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~-~~e~~GIT~~iga~~v~~~~~~ItfiDTPGh--e~F~~m-------~~r 356 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVA-AGEAGGITQHIGAYQVETNGGKITFLDTPGH--EAFTAM-------RAR 356 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCcc-ccccCceeeeccEEEEEECCEEEEEEECCCC--ccchhH-------HHh
Confidence 458899999999999999999999987764 2344566666555556666789999999995 444433 234
Q ss_pred hhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCCh--hHHHHHHHHH----hhcCCCccEEEccc
Q 014942 192 AGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP--GEIAKKLEWY----EKFTDVDEVIPVSA 265 (415)
Q Consensus 192 ~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~--~~~~~~~~~~----~~~~~~~~i~~vSA 265 (415)
.+..+|++|+|+|++++........+..... .+.|+|+|+||+|+... ..+...+... ....+..+++++||
T Consensus 357 ga~~aDiaILVVdAddGv~~qT~e~i~~a~~--~~vPiIVviNKiDl~~a~~e~V~~eL~~~~~~~e~~g~~vp~vpvSA 434 (787)
T PRK05306 357 GAQVTDIVVLVVAADDGVMPQTIEAINHAKA--AGVPIIVAINKIDKPGANPDRVKQELSEYGLVPEEWGGDTIFVPVSA 434 (787)
T ss_pred hhhhCCEEEEEEECCCCCCHhHHHHHHHHHh--cCCcEEEEEECccccccCHHHHHHHHHHhcccHHHhCCCceEEEEeC
Confidence 4688999999999998876666555555555 67999999999999642 2222111111 11223468999999
Q ss_pred CCCCCHHHHHHHHHhhCCCCCCCCCCCCccccCCchhHHHHHHHHHHHHhhcCCCCCceEEEEEEEEEecCCCee
Q 014942 266 KYGHGVEDIRDWILTKLPLGPAYYPKFQDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTRPTAKD 340 (415)
Q Consensus 266 ~~g~gv~eL~~~L~~~l~~~~~~~~~~~~~~t~~~~~~~i~eiireki~~~~~~eipys~~v~i~~~~~~~~~~~ 340 (415)
++|.|+++|+++|........ +...+.++....+++ ....+..|..+.+.+..|+.+.+..+
T Consensus 435 ktG~GI~eLle~I~~~~e~~~---------l~~~~~~~~~g~V~e----s~~dkg~G~v~~v~V~sGtLk~Gd~v 496 (787)
T PRK05306 435 KTGEGIDELLEAILLQAEVLE---------LKANPDRPARGTVIE----AKLDKGRGPVATVLVQNGTLKVGDIV 496 (787)
T ss_pred CCCCCchHHHHhhhhhhhhhh---------cccCCCCCcEEEEEE----EEEcCCCeEEEEEEEecCeEecCCEE
Confidence 999999999999975321100 000111111111111 12356788889999999998877554
No 102
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.84 E-value=7.4e-20 Score=160.21 Aligned_cols=154 Identities=19% Similarity=0.206 Sum_probs=102.7
Q ss_pred EEEEEecCCCCHHHHHHHHhCCceee-eeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhcc
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQKLSI-VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~~~~~-~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (415)
+|+++|++|||||||+|+|++..+.. .....+.+.......+......+.+|||||. ..+..+ ....++.
T Consensus 2 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~--~~~~~~-------~~~~~~~ 72 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQ--ERFRTL-------TSSYYRG 72 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCc--hhhhhh-------hHHHhCC
Confidence 79999999999999999999887643 2233333333222233344568999999994 333222 3444789
Q ss_pred cceEEEEecCCCCC--chHHHHHHHHhccc-CCCCCEEEEEeCCCCCChhH-HHHHHHHHhhcCCCccEEEcccCCCCCH
Q 014942 196 ADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGE-IAKKLEWYEKFTDVDEVIPVSAKYGHGV 271 (415)
Q Consensus 196 aD~ii~VvD~~~~~--~~~~~~l~~~l~~~-~~~~piilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~i~~vSA~~g~gv 271 (415)
+|++++|+|++++. .....++....... ..+.|+++|+||+|+..... ......... .. ..+++++||++|.|+
T Consensus 73 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~-~~-~~~~~~~Sa~~~~gi 150 (161)
T cd01863 73 AQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKFAR-KH-NMLFIETSAKTRDGV 150 (161)
T ss_pred CCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHHHH-Hc-CCEEEEEecCCCCCH
Confidence 99999999987643 33333333222221 26789999999999974322 222222222 22 347999999999999
Q ss_pred HHHHHHHHhh
Q 014942 272 EDIRDWILTK 281 (415)
Q Consensus 272 ~eL~~~L~~~ 281 (415)
+++++.+.+.
T Consensus 151 ~~~~~~~~~~ 160 (161)
T cd01863 151 QQAFEELVEK 160 (161)
T ss_pred HHHHHHHHHh
Confidence 9999999875
No 103
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.84 E-value=1.7e-19 Score=163.36 Aligned_cols=166 Identities=28% Similarity=0.326 Sum_probs=113.5
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCc-eeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhh-hhHhHHHHHHHHh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQK-LSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI-HMLDSMMMKNVRS 191 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~-~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~-~~l~~~~~~~~~~ 191 (415)
..++|+++|++|||||||+|+|++.+ ...++..+++|+....... +.++.+|||||+..... ......+......
T Consensus 23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~ 99 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKLIEE 99 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHHHHH
Confidence 45689999999999999999999976 4556777787776443322 36899999999632110 0111112122222
Q ss_pred h---hcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHHHHHHHhhcCC--CccEEEcccC
Q 014942 192 A---GINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTD--VDEVIPVSAK 266 (415)
Q Consensus 192 ~---~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~--~~~i~~vSA~ 266 (415)
+ ...++++++|+|++.+.......+...+.. .+.|+++|+||+|+............+..... ..+++++||+
T Consensus 100 ~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~--~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~Sa~ 177 (196)
T PRK00454 100 YLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKE--YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVILFSSL 177 (196)
T ss_pred HHHhCccceEEEEEEecCCCCCHHHHHHHHHHHH--cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceEEEEcC
Confidence 2 345578999999887766655555555554 67899999999999865444332222222111 3578999999
Q ss_pred CCCCHHHHHHHHHhhCCC
Q 014942 267 YGHGVEDIRDWILTKLPL 284 (415)
Q Consensus 267 ~g~gv~eL~~~L~~~l~~ 284 (415)
+|.|++++++.|.+.+.+
T Consensus 178 ~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 178 KKQGIDELRAAIAKWLAE 195 (196)
T ss_pred CCCCHHHHHHHHHHHhcC
Confidence 999999999999988765
No 104
>PRK11058 GTPase HflX; Provisional
Probab=99.84 E-value=5.9e-20 Score=184.74 Aligned_cols=163 Identities=23% Similarity=0.251 Sum_probs=114.2
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCC-eeEEEEeCCCCchhhhhhHhHHHHHHHHhhhc
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE-YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~-~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (415)
++|+++|.||||||||+|+|++.++. +++.+++|.++....+...+ ..+.+|||||+.......+...+. .+...+.
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~-v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~-~tl~~~~ 275 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVY-AADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFK-ATLQETR 275 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcee-eccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHH-HHHHHhh
Confidence 58999999999999999999998876 67888999888776665544 388999999974331223323333 3456678
Q ss_pred ccceEEEEecCCCCCchHH-HHHHHHhccc-CCCCCEEEEEeCCCCCChhHHHHHHHHHhhcCCCccEEEcccCCCCCHH
Q 014942 195 NADCIVVLVDACKAPERID-EILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVE 272 (415)
Q Consensus 195 ~aD~ii~VvD~~~~~~~~~-~~l~~~l~~~-~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gv~ 272 (415)
.||++|+|+|++++..... ..+...+... ..+.|+++|+||+|+....... ..... .+...++++||++|.|++
T Consensus 276 ~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~~~--~~~~~--~~~~~~v~ISAktG~GId 351 (426)
T PRK11058 276 QATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFEPR--IDRDE--ENKPIRVWLSAQTGAGIP 351 (426)
T ss_pred cCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchhHH--HHHHh--cCCCceEEEeCCCCCCHH
Confidence 9999999999988652221 1122222221 1478999999999997532111 11111 122235889999999999
Q ss_pred HHHHHHHhhCCC
Q 014942 273 DIRDWILTKLPL 284 (415)
Q Consensus 273 eL~~~L~~~l~~ 284 (415)
+|+++|.+.+..
T Consensus 352 eL~e~I~~~l~~ 363 (426)
T PRK11058 352 LLFQALTERLSG 363 (426)
T ss_pred HHHHHHHHHhhh
Confidence 999999998854
No 105
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.84 E-value=2.8e-19 Score=158.11 Aligned_cols=170 Identities=27% Similarity=0.308 Sum_probs=126.7
Q ss_pred CCCCCccEEEEEecCCCCHHHHHHHHhCCc-eeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhh-hhhHhHHHHH
Q 014942 110 HPNHKSGYVAVLGKPNVGKSTLANQMIGQK-LSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK-IHMLDSMMMK 187 (415)
Q Consensus 110 ~~~~~~~~V~ivG~~~vGKSSLln~l~~~~-~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~-~~~l~~~~~~ 187 (415)
.|....+-|+++|++|||||||+|+|++.+ .+.++.+||.|+......+.. .+.++|.||+.-.. .....+.+..
T Consensus 19 ~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~---~~~lVDlPGYGyAkv~k~~~e~w~~ 95 (200)
T COG0218 19 YPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDD---ELRLVDLPGYGYAKVPKEVKEKWKK 95 (200)
T ss_pred CCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecC---cEEEEeCCCcccccCCHHHHHHHHH
Confidence 344466789999999999999999999966 677999999999877655554 48999999984321 1122333333
Q ss_pred HHHhhh---cccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHHHHHHHh----hcCCCc-c
Q 014942 188 NVRSAG---INADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYE----KFTDVD-E 259 (415)
Q Consensus 188 ~~~~~~---~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~----~~~~~~-~ 259 (415)
.+..|+ .+-.++++++|+.++....+..+.+.+.. .+.|+++|+||+|..+..+......... ...... .
T Consensus 96 ~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~--~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~~~~ 173 (200)
T COG0218 96 LIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLE--LGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPDDQW 173 (200)
T ss_pred HHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHH--cCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCCccce
Confidence 333333 34678899999999999999999999888 8999999999999998765544333333 222221 1
Q ss_pred EEEcccCCCCCHHHHHHHHHhhCCC
Q 014942 260 VIPVSAKYGHGVEDIRDWILTKLPL 284 (415)
Q Consensus 260 i~~vSA~~g~gv~eL~~~L~~~l~~ 284 (415)
++..|+.++.|+++|...|.+.+..
T Consensus 174 ~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 174 VVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred EEEEecccccCHHHHHHHHHHHhhc
Confidence 7888999999999999999887643
No 106
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.84 E-value=4.5e-20 Score=184.58 Aligned_cols=164 Identities=26% Similarity=0.307 Sum_probs=116.5
Q ss_pred EEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCC-CeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhcc
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP-EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~-~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (415)
.|+++|.||||||||+|+|++.+.. ++++|.||..+..+.+... +..+.+|||||+...... ...+...+...+..
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~k-Ia~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~--~~gLg~~fLrhier 236 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPK-IANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASE--GVGLGHQFLRHIER 236 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCc-cccCCcceeceEEEEEEEeCCceEEEEECCCCcccccc--cchHHHHHHHHHhh
Confidence 7999999999999999999998765 5789999999988877765 679999999998532111 11122334445678
Q ss_pred cceEEEEecCCCC----CchHHHHHHHHhcccC---CCCCEEEEEeCCCCCChhHHHHHHHHHhhcCCCccEEEcccCCC
Q 014942 196 ADCIVVLVDACKA----PERIDEILEEGVGDHK---DKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYG 268 (415)
Q Consensus 196 aD~ii~VvD~~~~----~~~~~~~l~~~l~~~~---~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g 268 (415)
|+++|+|+|+++. .......+.+.+.... .++|+++|+||+|+..... ..+.+..... .+++++||+++
T Consensus 237 ~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~~e---~l~~l~~~l~-~~i~~iSA~tg 312 (424)
T PRK12297 237 TRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEAEE---NLEEFKEKLG-PKVFPISALTG 312 (424)
T ss_pred CCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCCHH---HHHHHHHHhC-CcEEEEeCCCC
Confidence 9999999999753 1111222333333221 4689999999999854321 1222222222 47999999999
Q ss_pred CCHHHHHHHHHhhCCCCCC
Q 014942 269 HGVEDIRDWILTKLPLGPA 287 (415)
Q Consensus 269 ~gv~eL~~~L~~~l~~~~~ 287 (415)
.|+++|+++|.+.+...++
T Consensus 313 eGI~eL~~~L~~~l~~~~~ 331 (424)
T PRK12297 313 QGLDELLYAVAELLEETPE 331 (424)
T ss_pred CCHHHHHHHHHHHHHhCcc
Confidence 9999999999998876543
No 107
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.84 E-value=5.4e-20 Score=163.30 Aligned_cols=156 Identities=22% Similarity=0.254 Sum_probs=105.5
Q ss_pred EEEEEecCCCCHHHHHHHHhCCceeeeeCCCCce-EEeEEEE--EeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhh
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTT-RHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt-~~~~~~~--~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~ 193 (415)
+|+++|.+|||||||++++++..+. ..+..|. ....... +......+.+|||||. +.+..+ ...++
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~-------~~~~~ 70 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFD--KNYKATIGVDFEMERFEILGVPFSLQLWDTAGQ--ERFKCI-------ASTYY 70 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC--CCCCCceeeEEEEEEEEECCEEEEEEEEeCCCh--HHHHhh-------HHHHh
Confidence 7999999999999999999998764 2222232 2222222 2333467999999994 444333 34458
Q ss_pred cccceEEEEecCCCC--CchHHHHHHHHhccc-CCCCCEEEEEeCCCCCChhHH---HHHHHHHhhcCCCccEEEcccCC
Q 014942 194 INADCIVVLVDACKA--PERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEI---AKKLEWYEKFTDVDEVIPVSAKY 267 (415)
Q Consensus 194 ~~aD~ii~VvD~~~~--~~~~~~~l~~~l~~~-~~~~piilV~NK~Dl~~~~~~---~~~~~~~~~~~~~~~i~~vSA~~ 267 (415)
+.+|++++|+|+++. ......|+...++.. ....|+++|+||+|+.+.... ......+....+ .+++++||++
T Consensus 71 ~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~e~Sa~~ 149 (170)
T cd04108 71 RGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQ-AEYWSVSALS 149 (170)
T ss_pred cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcC-CeEEEEECCC
Confidence 899999999999873 344555555544332 234679999999998654321 222222322223 4789999999
Q ss_pred CCCHHHHHHHHHhhCCC
Q 014942 268 GHGVEDIRDWILTKLPL 284 (415)
Q Consensus 268 g~gv~eL~~~L~~~l~~ 284 (415)
|.|++++++.|.+.+.+
T Consensus 150 g~~v~~lf~~l~~~~~~ 166 (170)
T cd04108 150 GENVREFFFRVAALTFE 166 (170)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999987754
No 108
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.84 E-value=6.2e-20 Score=162.04 Aligned_cols=156 Identities=18% Similarity=0.201 Sum_probs=103.6
Q ss_pred EEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEE-eEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhcc
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRH-RILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~-~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (415)
+|+++|.+|||||||+++|.+..+.. ..+.+... .....+......+.+|||||.. .+. ..+..++..
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~--~~~-------~~~~~~~~~ 70 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEFPE--NVPRVLPEITIPADVTPERVPTTIVDTSSRP--QDR-------ANLAAEIRK 70 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCc--cCCCcccceEeeeeecCCeEEEEEEeCCCch--hhh-------HHHhhhccc
Confidence 79999999999999999999887642 23332211 1122234456789999999953 211 123344689
Q ss_pred cceEEEEecCCCCCchH--HHHHHHHhcccCCCCCEEEEEeCCCCCChhHH---HHHHHHH-hhcCCCccEEEcccCCCC
Q 014942 196 ADCIVVLVDACKAPERI--DEILEEGVGDHKDKLPILLVLNKKDLIKPGEI---AKKLEWY-EKFTDVDEVIPVSAKYGH 269 (415)
Q Consensus 196 aD~ii~VvD~~~~~~~~--~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~---~~~~~~~-~~~~~~~~i~~vSA~~g~ 269 (415)
+|++++|+|++++..-. ...+...++....+.|+++|+||+|+.+.... ......+ .......+++++||++|.
T Consensus 71 ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~ 150 (166)
T cd01893 71 ANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLI 150 (166)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEecccccc
Confidence 99999999988754322 22343444433357999999999999764332 2222222 122223479999999999
Q ss_pred CHHHHHHHHHhhCC
Q 014942 270 GVEDIRDWILTKLP 283 (415)
Q Consensus 270 gv~eL~~~L~~~l~ 283 (415)
|++++++.+.+.+.
T Consensus 151 ~v~~lf~~~~~~~~ 164 (166)
T cd01893 151 NVSEVFYYAQKAVL 164 (166)
T ss_pred CHHHHHHHHHHHhc
Confidence 99999999987653
No 109
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.84 E-value=9e-20 Score=164.47 Aligned_cols=156 Identities=22% Similarity=0.203 Sum_probs=106.9
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~ 193 (415)
+.++|+++|++|||||||+++|.+..+....+ |.......+..++..+.+|||||. ..+. ..+..++
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~~~~~----T~~~~~~~i~~~~~~~~l~D~~G~--~~~~-------~~~~~~~ 84 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDDRLAQHVP----TLHPTSEELTIGNIKFKTFDLGGH--EQAR-------RLWKDYF 84 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCcccCC----ccCcceEEEEECCEEEEEEECCCC--HHHH-------HHHHHHh
Confidence 56799999999999999999999877542222 222222344556788999999994 2222 2345567
Q ss_pred cccceEEEEecCCCCC--chHHHHHHHHhccc-CCCCCEEEEEeCCCCCChhHHHHHHHHHhh--------------cCC
Q 014942 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEK--------------FTD 256 (415)
Q Consensus 194 ~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~-~~~~piilV~NK~Dl~~~~~~~~~~~~~~~--------------~~~ 256 (415)
..+|++++|+|+++.. .....++...++.. ..+.|+++|+||+|+............+.. ...
T Consensus 85 ~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (190)
T cd00879 85 PEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSLKVSGIR 164 (190)
T ss_pred ccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCcccccccccccccccCce
Confidence 8999999999998642 23344555554432 156999999999999743333333333321 112
Q ss_pred CccEEEcccCCCCCHHHHHHHHHhhC
Q 014942 257 VDEVIPVSAKYGHGVEDIRDWILTKL 282 (415)
Q Consensus 257 ~~~i~~vSA~~g~gv~eL~~~L~~~l 282 (415)
..++++|||++|.|+++++++|.+.+
T Consensus 165 ~~~~~~~Sa~~~~gv~e~~~~l~~~~ 190 (190)
T cd00879 165 PIEVFMCSVVKRQGYGEAFRWLSQYL 190 (190)
T ss_pred eEEEEEeEecCCCChHHHHHHHHhhC
Confidence 24689999999999999999998753
No 110
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.84 E-value=5.3e-20 Score=164.65 Aligned_cols=154 Identities=16% Similarity=0.145 Sum_probs=104.0
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEE--EEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhh
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~--~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~ 193 (415)
.+|+++|.+|||||||++++.+..+. ..+.+|....... .+......+.+||||| ++.+..+. ..++
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G--~~~~~~~~-------~~~~ 70 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYP--ETYVPTVFENYTASFEIDEQRIELSLWDTSG--SPYYDNVR-------PLCY 70 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCC--CCcCCceEEEEEEEEEECCEEEEEEEEECCC--chhhhhcc-------hhhc
Confidence 37999999999999999999988764 2333333222221 2334456789999999 44444432 2347
Q ss_pred cccceEEEEecCCCCC--chH-HHHHHHHhcccCCCCCEEEEEeCCCCCCh------------hHH-HHHHHHHhhcCCC
Q 014942 194 INADCIVVLVDACKAP--ERI-DEILEEGVGDHKDKLPILLVLNKKDLIKP------------GEI-AKKLEWYEKFTDV 257 (415)
Q Consensus 194 ~~aD~ii~VvD~~~~~--~~~-~~~l~~~l~~~~~~~piilV~NK~Dl~~~------------~~~-~~~~~~~~~~~~~ 257 (415)
+.+|++|+|+|.+++. ... ..|+.. ++...++.|+++|+||+|+... ..+ .+....+....+.
T Consensus 71 ~~a~~~ilvfdit~~~Sf~~~~~~w~~~-i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~ 149 (178)
T cd04131 71 PDSDAVLICFDISRPETLDSVLKKWRGE-IQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGA 149 (178)
T ss_pred CCCCEEEEEEECCChhhHHHHHHHHHHH-HHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCC
Confidence 8999999999998754 332 334333 3333367999999999998531 011 1223334444444
Q ss_pred ccEEEcccCCCCC-HHHHHHHHHhh
Q 014942 258 DEVIPVSAKYGHG-VEDIRDWILTK 281 (415)
Q Consensus 258 ~~i~~vSA~~g~g-v~eL~~~L~~~ 281 (415)
.++++|||++|.| |+++|..+.+.
T Consensus 150 ~~~~E~SA~~~~~~v~~~F~~~~~~ 174 (178)
T cd04131 150 EIYLECSAFTSEKSVRDIFHVATMA 174 (178)
T ss_pred CEEEECccCcCCcCHHHHHHHHHHH
Confidence 4799999999995 99999998874
No 111
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.84 E-value=2.1e-20 Score=197.20 Aligned_cols=203 Identities=17% Similarity=0.231 Sum_probs=131.4
Q ss_pred CCccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEE--Ee--CCCeeEEEEeCCCCchhhhhhHhHHHHHH
Q 014942 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CS--GPEYQMILYDTPGIIEKKIHMLDSMMMKN 188 (415)
Q Consensus 113 ~~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~--~~--~~~~~l~liDtpG~~~~~~~~l~~~~~~~ 188 (415)
.+.+.|+|+|++|+|||||+++|.+..+.. ...++.|.+..... +. ..+..+.||||||+ ..+..+
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~-~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGh--e~F~~m------- 311 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQ-KEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGH--EAFSSM------- 311 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCcc-ccCCccccccceEEEEEEecCCceEEEEEECCcH--HHHHHH-------
Confidence 477899999999999999999999877642 33344443322111 12 24579999999994 444333
Q ss_pred HHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChh--HHHHHHHHH----hhcCCCccEEE
Q 014942 189 VRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG--EIAKKLEWY----EKFTDVDEVIP 262 (415)
Q Consensus 189 ~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~--~~~~~~~~~----~~~~~~~~i~~ 262 (415)
+..++..+|++|+|+|++++........+..+.. .+.|+|+|+||+|+.... .+...+..+ ....+..++++
T Consensus 312 r~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~--~~iPiIVViNKiDl~~~~~e~v~~eL~~~~ll~e~~g~~vpvv~ 389 (742)
T CHL00189 312 RSRGANVTDIAILIIAADDGVKPQTIEAINYIQA--ANVPIIVAINKIDKANANTERIKQQLAKYNLIPEKWGGDTPMIP 389 (742)
T ss_pred HHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHh--cCceEEEEEECCCccccCHHHHHHHHHHhccchHhhCCCceEEE
Confidence 3445789999999999988876655555555554 679999999999997532 122111111 11223468999
Q ss_pred cccCCCCCHHHHHHHHHhhCCCCCCCCCCCCccccCCchhHHHHHHHHHHHHhhcCCCCCceEEEEEEEEEecCCCee
Q 014942 263 VSAKYGHGVEDIRDWILTKLPLGPAYYPKFQDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTRPTAKD 340 (415)
Q Consensus 263 vSA~~g~gv~eL~~~L~~~l~~~~~~~~~~~~~~t~~~~~~~i~eiireki~~~~~~eipys~~v~i~~~~~~~~~~~ 340 (415)
+||++|.|+++|+++|....... ...+ .+.......+++ ....+..|..+.+.+..|+.+.+..+
T Consensus 390 VSAktG~GIdeLle~I~~l~e~~-~lk~--------~~~~~~~g~V~e----~~iD~~~G~V~~~~V~sGtLr~GD~v 454 (742)
T CHL00189 390 ISASQGTNIDKLLETILLLAEIE-DLKA--------DPTQLAQGIILE----AHLDKTKGPVATILVQNGTLHIGDII 454 (742)
T ss_pred EECCCCCCHHHHHHhhhhhhhhh-cccC--------CCCCCceEEEEE----EEEcCCCceEEEEEEEcCEEecCCEE
Confidence 99999999999999998764310 0000 011110111110 12356778888888999988876544
No 112
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.84 E-value=6.6e-20 Score=169.01 Aligned_cols=156 Identities=19% Similarity=0.166 Sum_probs=104.3
Q ss_pred EEEEEecCCCCHHHHHHHHhCCceeeeeCCCCc-eEEeEEEEEeC---CCeeEEEEeCCCCchhhhhhHhHHHHHHHHhh
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQT-TRHRILGICSG---PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~t-t~~~~~~~~~~---~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~ 192 (415)
+|+++|.+|||||||+++|.+..+. ..+..| +.+.....+.. ....+.+|||||. ..+..+ +..+
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~~~--~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~--~~~~~l-------~~~~ 70 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEGFG--KSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQ--SIGGKM-------LDKY 70 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCC--CCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCc--HHHHHH-------HHHH
Confidence 7999999999999999999988764 222333 33333222222 3568999999994 443333 3344
Q ss_pred hcccceEEEEecCCCCC--chHHHHHHHHhccc---CCCCCEEEEEeCCCCCChhHH-HHHHHHHhhcCCCccEEEcccC
Q 014942 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDH---KDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAK 266 (415)
Q Consensus 193 ~~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~---~~~~piilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~ 266 (415)
++.+|++|+|+|+++.. .....|+..+.+.. ..+.|+++|+||+|+.....+ ......+....+ .+++++||+
T Consensus 71 ~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~-~~~~~iSAk 149 (215)
T cd04109 71 IYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANG-MESCLVSAK 149 (215)
T ss_pred hhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcC-CEEEEEECC
Confidence 78999999999998653 33333333332221 135689999999999743322 122223333333 478999999
Q ss_pred CCCCHHHHHHHHHhhCCC
Q 014942 267 YGHGVEDIRDWILTKLPL 284 (415)
Q Consensus 267 ~g~gv~eL~~~L~~~l~~ 284 (415)
+|.|++++|++|++.+..
T Consensus 150 tg~gv~~lf~~l~~~l~~ 167 (215)
T cd04109 150 TGDRVNLLFQQLAAELLG 167 (215)
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 999999999999987754
No 113
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.84 E-value=5.5e-20 Score=169.65 Aligned_cols=154 Identities=18% Similarity=0.286 Sum_probs=104.9
Q ss_pred EEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhccc
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~a 196 (415)
+|+++|.+|||||||+++|++..+.. ..+...... .........+.+|||||. +.+..+. ..+++.+
T Consensus 2 KIvivG~~~vGKTSLi~r~~~~~f~~--~~~Tig~~~--~~~~~~~~~l~iwDt~G~--e~~~~l~-------~~~~~~a 68 (220)
T cd04126 2 KVVLLGDMNVGKTSLLHRYMERRFKD--TVSTVGGAF--YLKQWGPYNISIWDTAGR--EQFHGLG-------SMYCRGA 68 (220)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCC--CCCccceEE--EEEEeeEEEEEEEeCCCc--ccchhhH-------HHHhccC
Confidence 79999999999999999999988742 222111121 122335568999999994 4444433 3347899
Q ss_pred ceEEEEecCCCCC--chHHHHHHHHhcccCCCCCEEEEEeCCCCCC-------------------hhHH--HHHHHHHhh
Q 014942 197 DCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIK-------------------PGEI--AKKLEWYEK 253 (415)
Q Consensus 197 D~ii~VvD~~~~~--~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~-------------------~~~~--~~~~~~~~~ 253 (415)
|++|+|+|+++.. .....++..+.+....+.|+|+|+||+|+.. .+.+ ++.......
T Consensus 69 d~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~ 148 (220)
T cd04126 69 AAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKR 148 (220)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHH
Confidence 9999999998753 4455555555443335789999999999965 1111 122222222
Q ss_pred cCC------------CccEEEcccCCCCCHHHHHHHHHhhCC
Q 014942 254 FTD------------VDEVIPVSAKYGHGVEDIRDWILTKLP 283 (415)
Q Consensus 254 ~~~------------~~~i~~vSA~~g~gv~eL~~~L~~~l~ 283 (415)
... ..++++|||++|.||+++|..+++.+.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~ 190 (220)
T cd04126 149 INKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVL 190 (220)
T ss_pred hCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 211 147999999999999999999998664
No 114
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.84 E-value=9.1e-20 Score=159.49 Aligned_cols=151 Identities=21% Similarity=0.247 Sum_probs=100.9
Q ss_pred EEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhccc
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~a 196 (415)
+|+++|++|||||||+++|....+.. ..| |.... ...+...+..+.+|||||. ..+. ..+..++..+
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~--~~~-t~~~~-~~~~~~~~~~~~i~Dt~G~--~~~~-------~~~~~~~~~~ 67 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT--TIP-TIGFN-VETVTYKNLKFQVWDLGGQ--TSIR-------PYWRCYYSNT 67 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC--cCC-ccCcC-eEEEEECCEEEEEEECCCC--HHHH-------HHHHHHhcCC
Confidence 58999999999999999997766532 122 21111 1234456789999999995 3322 2345568899
Q ss_pred ceEEEEecCCCCC--chHHHHHHHHhccc-CCCCCEEEEEeCCCCCChhHHHHHHHHHhh---cCCCccEEEcccCCCCC
Q 014942 197 DCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVSAKYGHG 270 (415)
Q Consensus 197 D~ii~VvD~~~~~--~~~~~~l~~~l~~~-~~~~piilV~NK~Dl~~~~~~~~~~~~~~~---~~~~~~i~~vSA~~g~g 270 (415)
|++|+|+|+++.. .....++...++.. ..+.|+++|+||+|+.+.....+....+.. .....+++++||++|.|
T Consensus 68 ~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~g 147 (158)
T cd04151 68 DAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGLSELKDRTWSIFKTSAIKGEG 147 (158)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCccccCCCcEEEEEeeccCCCC
Confidence 9999999998643 22234444444321 147899999999999754322222222211 11123699999999999
Q ss_pred HHHHHHHHHh
Q 014942 271 VEDIRDWILT 280 (415)
Q Consensus 271 v~eL~~~L~~ 280 (415)
+++++++|++
T Consensus 148 i~~l~~~l~~ 157 (158)
T cd04151 148 LDEGMDWLVN 157 (158)
T ss_pred HHHHHHHHhc
Confidence 9999999975
No 115
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.84 E-value=1e-19 Score=159.85 Aligned_cols=155 Identities=18% Similarity=0.255 Sum_probs=101.3
Q ss_pred EEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceE-EeEEE--EE-eCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhh
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTR-HRILG--IC-SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~-~~~~~--~~-~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~ 192 (415)
+|+++|.+|||||||+++|.+........+..++. +.... .+ ......+.+||||| +..+..+ ...+
T Consensus 2 ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G--~~~~~~~-------~~~~ 72 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAG--QELYSDM-------VSNY 72 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCC--HHHHHHH-------HHHH
Confidence 79999999999999999998642111223333332 21111 12 23457899999999 3333322 3445
Q ss_pred hcccceEEEEecCCCCC--chHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHH-HHHHHhhcCCCccEEEcccCCCC
Q 014942 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK-KLEWYEKFTDVDEVIPVSAKYGH 269 (415)
Q Consensus 193 ~~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~-~~~~~~~~~~~~~i~~vSA~~g~ 269 (415)
+..+|++++|+|.++.. .....|+...... ..+.|+++|+||+|+.+...+.. ....+....+ .+++++||++|.
T Consensus 73 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 150 (164)
T cd04101 73 WESPSVFILVYDVSNKASFENCSRWVNKVRTA-SKHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQ-LKFFKTSALRGV 150 (164)
T ss_pred hCCCCEEEEEEECcCHHHHHHHHHHHHHHHHh-CCCCCEEEEEECcccccccCCCHHHHHHHHHHcC-CeEEEEeCCCCC
Confidence 78999999999998653 3333444333222 25689999999999965433222 1122222222 478999999999
Q ss_pred CHHHHHHHHHhhC
Q 014942 270 GVEDIRDWILTKL 282 (415)
Q Consensus 270 gv~eL~~~L~~~l 282 (415)
|++++++.|.+.+
T Consensus 151 gi~~l~~~l~~~~ 163 (164)
T cd04101 151 GYEEPFESLARAF 163 (164)
T ss_pred ChHHHHHHHHHHh
Confidence 9999999998754
No 116
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.83 E-value=8.5e-20 Score=159.87 Aligned_cols=153 Identities=20% Similarity=0.294 Sum_probs=101.9
Q ss_pred EEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEE--EEe--CCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhh
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~--~~~--~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~ 192 (415)
+|+++|.+|+|||||+++|++..+.. ...+....+.... .+. .....+.+||||| ++.+..+ ...+
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G--~~~~~~~-------~~~~ 71 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGIFTK-DYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAG--QEEFDAI-------TKAY 71 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC-CCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCc--hHHHHHh-------HHHH
Confidence 79999999999999999999876542 1122222222221 222 3456899999999 4444333 3445
Q ss_pred hcccceEEEEecCCCCC--chHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHH-HHHHHHhhcCCCccEEEcccCCCC
Q 014942 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYGH 269 (415)
Q Consensus 193 ~~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~i~~vSA~~g~ 269 (415)
++.+|++++|+|++++. .....|+..+ .....+.|+++|+||+|+.....+. +....+....+ .+++++||++|.
T Consensus 72 ~~~~~~~v~v~d~~~~~s~~~l~~~~~~~-~~~~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~ 149 (162)
T cd04106 72 YRGAQACILVFSTTDRESFEAIESWKEKV-EAECGDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQ-LPLFRTSVKDDF 149 (162)
T ss_pred hcCCCEEEEEEECCCHHHHHHHHHHHHHH-HHhCCCCCEEEEEEChhcccccCCCHHHHHHHHHHcC-CeEEEEECCCCC
Confidence 78999999999998653 3333333333 2222579999999999997543321 12222233233 389999999999
Q ss_pred CHHHHHHHHHhh
Q 014942 270 GVEDIRDWILTK 281 (415)
Q Consensus 270 gv~eL~~~L~~~ 281 (415)
|+++++++|...
T Consensus 150 ~v~~l~~~l~~~ 161 (162)
T cd04106 150 NVTELFEYLAEK 161 (162)
T ss_pred CHHHHHHHHHHh
Confidence 999999999764
No 117
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.83 E-value=7.7e-20 Score=163.29 Aligned_cols=157 Identities=17% Similarity=0.159 Sum_probs=102.7
Q ss_pred ccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEE--e----------CCCeeEEEEeCCCCchhhhhhHh
Q 014942 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC--S----------GPEYQMILYDTPGIIEKKIHMLD 182 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~--~----------~~~~~l~liDtpG~~~~~~~~l~ 182 (415)
..+|+++|.+|||||||++++.+..+.. ...+....+.....+ . .....+.+||||| ++.+..+
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G--~~~~~~~- 79 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDNKFNP-KFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAG--QERFRSL- 79 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCc-cCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCC--hHHHHHH-
Confidence 3589999999999999999999876632 111111111111111 1 2346889999999 4443333
Q ss_pred HHHHHHHHhhhcccceEEEEecCCCCC--chHHHHHHHHhcc-cCCCCCEEEEEeCCCCCChhHHH-HHHHHHhhcCCCc
Q 014942 183 SMMMKNVRSAGINADCIVVLVDACKAP--ERIDEILEEGVGD-HKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVD 258 (415)
Q Consensus 183 ~~~~~~~~~~~~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~-~~~~~piilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~ 258 (415)
...+++++|++|+|+|+++.. .....|+...... ...+.|+++|+||+|+.....+. .....+....+ .
T Consensus 80 ------~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~-~ 152 (180)
T cd04127 80 ------TTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYG-I 152 (180)
T ss_pred ------HHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcC-C
Confidence 445578999999999998643 3333444333222 12478999999999997532221 12222333333 4
Q ss_pred cEEEcccCCCCCHHHHHHHHHhhC
Q 014942 259 EVIPVSAKYGHGVEDIRDWILTKL 282 (415)
Q Consensus 259 ~i~~vSA~~g~gv~eL~~~L~~~l 282 (415)
+++++||++|.|+++++++|.+.+
T Consensus 153 ~~~e~Sak~~~~v~~l~~~l~~~~ 176 (180)
T cd04127 153 PYFETSAATGTNVEKAVERLLDLV 176 (180)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHH
Confidence 799999999999999999998755
No 118
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.83 E-value=1.1e-19 Score=160.59 Aligned_cols=158 Identities=23% Similarity=0.247 Sum_probs=103.7
Q ss_pred EEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEE--EEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhc
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~--~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (415)
+|+++|++|||||||+|+|.+..+.. ...+....+.... ........+.+|||||. ..+.. .+..+++
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~--~~~~~-------~~~~~~~ 71 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKKFSN-QYKATIGADFLTKEVTVDDKLVTLQIWDTAGQ--ERFQS-------LGVAFYR 71 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCc-CcCCccceEEEEEEEEECCEEEEEEEEeCCCh--HHHHh-------HHHHHhc
Confidence 79999999999999999999887542 1112212222222 22333457789999994 33332 2445588
Q ss_pred ccceEEEEecCCCCC--chHHHHHHHHhccc----CCCCCEEEEEeCCCCCChhH-HHHHHHHHhhcCCCccEEEcccCC
Q 014942 195 NADCIVVLVDACKAP--ERIDEILEEGVGDH----KDKLPILLVLNKKDLIKPGE-IAKKLEWYEKFTDVDEVIPVSAKY 267 (415)
Q Consensus 195 ~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~----~~~~piilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~i~~vSA~~ 267 (415)
.+|++|+|+|++++. .....|....+... ..+.|+++|+||+|+..+.. .......+....+..+++++||++
T Consensus 72 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 151 (172)
T cd01862 72 GADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKE 151 (172)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCC
Confidence 999999999998654 22223333322221 13789999999999973221 122222333334456899999999
Q ss_pred CCCHHHHHHHHHhhCCC
Q 014942 268 GHGVEDIRDWILTKLPL 284 (415)
Q Consensus 268 g~gv~eL~~~L~~~l~~ 284 (415)
|.|+++++++|.+.+.+
T Consensus 152 ~~gv~~l~~~i~~~~~~ 168 (172)
T cd01862 152 AINVEQAFETIARKALE 168 (172)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999987653
No 119
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.83 E-value=9.6e-20 Score=169.08 Aligned_cols=158 Identities=14% Similarity=0.082 Sum_probs=106.6
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEE--EEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~--~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~ 191 (415)
...+|+++|.+|||||||+++|++..+. ..+.+|....... .+......+.||||+| ++.+..+ ...
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~--~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG--~e~~~~~-------~~~ 80 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCYP--ETYVPTVFENYTAGLETEEQRVELSLWDTSG--SPYYDNV-------RPL 80 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCCC--CCcCCceeeeeEEEEEECCEEEEEEEEeCCC--chhhHHH-------HHH
Confidence 3458999999999999999999988764 2233332222211 2334456899999999 4554443 234
Q ss_pred hhcccceEEEEecCCCCCc--h-HHHHHHHHhcccCCCCCEEEEEeCCCCCCh------------hHH-HHHHHHHhhcC
Q 014942 192 AGINADCIVVLVDACKAPE--R-IDEILEEGVGDHKDKLPILLVLNKKDLIKP------------GEI-AKKLEWYEKFT 255 (415)
Q Consensus 192 ~~~~aD~ii~VvD~~~~~~--~-~~~~l~~~l~~~~~~~piilV~NK~Dl~~~------------~~~-~~~~~~~~~~~ 255 (415)
++++||++|+|+|.++... . ...|+..+.+ ...+.|+++|+||+|+... ..+ .+....+....
T Consensus 81 ~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~-~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~ 159 (232)
T cd04174 81 CYSDSDAVLLCFDISRPETVDSALKKWKAEIMD-YCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQL 159 (232)
T ss_pred HcCCCcEEEEEEECCChHHHHHHHHHHHHHHHH-hCCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHc
Confidence 5899999999999987542 2 2344444332 2257899999999998531 111 12233444444
Q ss_pred CCccEEEcccCCCC-CHHHHHHHHHhhCC
Q 014942 256 DVDEVIPVSAKYGH-GVEDIRDWILTKLP 283 (415)
Q Consensus 256 ~~~~i~~vSA~~g~-gv~eL~~~L~~~l~ 283 (415)
+...+++|||++|. ||+++|..++..+.
T Consensus 160 ~~~~~~EtSAktg~~~V~e~F~~~~~~~~ 188 (232)
T cd04174 160 GAEVYLECSAFTSEKSIHSIFRSASLLCL 188 (232)
T ss_pred CCCEEEEccCCcCCcCHHHHHHHHHHHHH
Confidence 44468999999998 89999999987653
No 120
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.83 E-value=9.5e-20 Score=165.78 Aligned_cols=163 Identities=18% Similarity=0.196 Sum_probs=108.5
Q ss_pred EEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCC--eeEEEEeCCCCchhhhhhHhHHHHHHHHhhhc
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (415)
+|+++|.+|||||||+++|++..+. ..+..++.......+...+ ..+.+|||||. ..+..+ ...++.
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~--~~~~~~-------~~~~~~ 69 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFE--PKYRRTVEEMHRKEYEVGGVSLTLDILDTSGS--YSFPAM-------RKLSIQ 69 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC--ccCCCchhhheeEEEEECCEEEEEEEEECCCc--hhhhHH-------HHHHhh
Confidence 5899999999999999999988764 2233333222222333333 67899999994 333322 233578
Q ss_pred ccceEEEEecCCCCC--chHHHHHHHHhcccC-CCCCEEEEEeCCCCCCh-hHHH--HHHHHHhhcCCCccEEEcccCCC
Q 014942 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHK-DKLPILLVLNKKDLIKP-GEIA--KKLEWYEKFTDVDEVIPVSAKYG 268 (415)
Q Consensus 195 ~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~-~~~piilV~NK~Dl~~~-~~~~--~~~~~~~~~~~~~~i~~vSA~~g 268 (415)
.+|++|+|+|++++. .....++..+..... .+.|+++|+||+|+... ..+. ...+... .....+++++||++|
T Consensus 70 ~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~-~~~~~~~~~~Sa~~g 148 (198)
T cd04147 70 NSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVE-LDWNCGFVETSAKDN 148 (198)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHH-hhcCCcEEEecCCCC
Confidence 999999999998653 223333333332211 57999999999999652 2221 1111111 112247899999999
Q ss_pred CCHHHHHHHHHhhCCCCCCCCCC
Q 014942 269 HGVEDIRDWILTKLPLGPAYYPK 291 (415)
Q Consensus 269 ~gv~eL~~~L~~~l~~~~~~~~~ 291 (415)
.|+++++++|.+.+...++.+|.
T Consensus 149 ~gv~~l~~~l~~~~~~~~~~~~~ 171 (198)
T cd04147 149 ENVLEVFKELLRQANLPYNLSPA 171 (198)
T ss_pred CCHHHHHHHHHHHhhcccccchh
Confidence 99999999999999877777764
No 121
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.83 E-value=1.6e-19 Score=162.22 Aligned_cols=157 Identities=17% Similarity=0.198 Sum_probs=104.8
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~ 193 (415)
+..+|+++|++|||||||++++....+.. ..| |+... ...+...+..+.+|||||. ..+. ..+..++
T Consensus 16 ~~~kv~lvG~~~vGKTsli~~~~~~~~~~--~~~-T~~~~-~~~~~~~~~~~~l~D~~G~--~~~~-------~~~~~~~ 82 (182)
T PTZ00133 16 KEVRILMVGLDAAGKTTILYKLKLGEVVT--TIP-TIGFN-VETVEYKNLKFTMWDVGGQ--DKLR-------PLWRHYY 82 (182)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc--cCC-ccccc-eEEEEECCEEEEEEECCCC--HhHH-------HHHHHHh
Confidence 34689999999999999999997665532 122 22221 2234557789999999994 3332 2345568
Q ss_pred cccceEEEEecCCCCC--chHHHHHHHHhccc-CCCCCEEEEEeCCCCCChhHHHHHHHHHhhc---CCCccEEEcccCC
Q 014942 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEKF---TDVDEVIPVSAKY 267 (415)
Q Consensus 194 ~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~-~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~---~~~~~i~~vSA~~ 267 (415)
+.+|++|+|+|+++.. .....++.+.+... ..+.|+++|+||+|+.......+....+... .....++++||++
T Consensus 83 ~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~t 162 (182)
T PTZ00133 83 QNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGLHSVRQRNWYIQGCCATT 162 (182)
T ss_pred cCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCCCcccCCcEEEEeeeCCC
Confidence 9999999999997643 33344455444321 1468999999999986532222222222211 1112567899999
Q ss_pred CCCHHHHHHHHHhhCC
Q 014942 268 GHGVEDIRDWILTKLP 283 (415)
Q Consensus 268 g~gv~eL~~~L~~~l~ 283 (415)
|.|+++++++|.+.+.
T Consensus 163 g~gv~e~~~~l~~~i~ 178 (182)
T PTZ00133 163 AQGLYEGLDWLSANIK 178 (182)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999997654
No 122
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.83 E-value=7.7e-20 Score=162.29 Aligned_cols=155 Identities=18% Similarity=0.192 Sum_probs=102.7
Q ss_pred EEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEe--CCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhc
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~--~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (415)
+|+++|++|+|||||++++.+..+. ....++........+. .....+.+|||||. ..+..+. ..++.
T Consensus 2 ki~i~G~~~~GKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~~-------~~~~~ 70 (174)
T cd04135 2 KCVVVGDGAVGKTCLLMSYANDAFP--EEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQ--EDYDRLR-------PLSYP 70 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC--CCCCCceeeeeEEEEEECCEEEEEEEEeCCCc--ccccccc-------cccCC
Confidence 7999999999999999999988764 2233343333222222 33356789999994 3333332 23478
Q ss_pred ccceEEEEecCCCCC--chHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHH-------------HHHHHHhhcCCCcc
Q 014942 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-------------KKLEWYEKFTDVDE 259 (415)
Q Consensus 195 ~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~-------------~~~~~~~~~~~~~~ 259 (415)
.+|++++|+|.+++. ......+...+.....+.|+++|+||+|+.+..... .....+....+..+
T Consensus 71 ~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 150 (174)
T cd04135 71 MTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHC 150 (174)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCE
Confidence 999999999998654 223223333333324689999999999986432111 11122233334457
Q ss_pred EEEcccCCCCCHHHHHHHHHhhC
Q 014942 260 VIPVSAKYGHGVEDIRDWILTKL 282 (415)
Q Consensus 260 i~~vSA~~g~gv~eL~~~L~~~l 282 (415)
+++|||++|.|++++++.+++.+
T Consensus 151 ~~e~Sa~~~~gi~~~f~~~~~~~ 173 (174)
T cd04135 151 YVECSALTQKGLKTVFDEAILAI 173 (174)
T ss_pred EEEecCCcCCCHHHHHHHHHHHh
Confidence 99999999999999999998754
No 123
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.83 E-value=1.2e-19 Score=158.38 Aligned_cols=151 Identities=21% Similarity=0.273 Sum_probs=104.5
Q ss_pred EEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhccc
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~a 196 (415)
+|+++|.+|||||||++++++..........+.+. ..+...+..+.+|||||. ..+.. .+..++..+
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~~~~t~~~~~----~~~~~~~~~~~i~D~~G~--~~~~~-------~~~~~~~~~ 67 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVTTIPTIGFNV----ETVEYKNVSFTVWDVGGQ--DKIRP-------LWKHYYENT 67 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcCcce----EEEEECCEEEEEEECCCC--hhhHH-------HHHHHhccC
Confidence 58999999999999999999887432222222222 223445779999999994 33322 234457899
Q ss_pred ceEEEEecCCCCC--chHHHHHHHHhccc-CCCCCEEEEEeCCCCCChhHHHHHHHHHhh---cCCCccEEEcccCCCCC
Q 014942 197 DCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVSAKYGHG 270 (415)
Q Consensus 197 D~ii~VvD~~~~~--~~~~~~l~~~l~~~-~~~~piilV~NK~Dl~~~~~~~~~~~~~~~---~~~~~~i~~vSA~~g~g 270 (415)
|++++|+|++++. .....++....... ..+.|+++|+||+|+.......+....+.. .....+++++||++|.|
T Consensus 68 ~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 147 (158)
T cd00878 68 NGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLEKILGRRWHIQPCSAVTGDG 147 (158)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChhhccCCcEEEEEeeCCCCCC
Confidence 9999999998752 33334444443321 257899999999999865433333333332 22345899999999999
Q ss_pred HHHHHHHHHh
Q 014942 271 VEDIRDWILT 280 (415)
Q Consensus 271 v~eL~~~L~~ 280 (415)
+++++++|..
T Consensus 148 v~~~~~~l~~ 157 (158)
T cd00878 148 LDEGLDWLLQ 157 (158)
T ss_pred HHHHHHHHhh
Confidence 9999999875
No 124
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.83 E-value=8.7e-20 Score=161.16 Aligned_cols=153 Identities=20% Similarity=0.176 Sum_probs=100.5
Q ss_pred EEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEE--EEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhc
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRIL--GICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~--~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (415)
+|+++|.+|||||||+++|++..+. .....+..+... .........+.+|||||.. .+..+. ...++
T Consensus 2 ki~i~G~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~--~~~~~~-------~~~~~ 70 (171)
T cd00157 2 KIVVVGDGAVGKTCLLISYTTGKFP--TEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQE--EYDRLR-------PLSYP 70 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC--CCCCCceeeeeEEEEEECCEEEEEEEEeCCCcc--cccccc-------hhhcC
Confidence 7999999999999999999988763 122222222222 2233445679999999953 222222 22357
Q ss_pred ccceEEEEecCCCCCc--hHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHH------------HHHHHHHhhcCCCccE
Q 014942 195 NADCIVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI------------AKKLEWYEKFTDVDEV 260 (415)
Q Consensus 195 ~aD~ii~VvD~~~~~~--~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~------------~~~~~~~~~~~~~~~i 260 (415)
.+|++++|+|++++.. .....+...+.....+.|+++|+||+|+...... ......+....+..++
T Consensus 71 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 150 (171)
T cd00157 71 NTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGY 150 (171)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEE
Confidence 8999999999986432 2222233333332257999999999999754432 1112223333344489
Q ss_pred EEcccCCCCCHHHHHHHHHh
Q 014942 261 IPVSAKYGHGVEDIRDWILT 280 (415)
Q Consensus 261 ~~vSA~~g~gv~eL~~~L~~ 280 (415)
+++||++|.|+++++++|.+
T Consensus 151 ~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 151 MECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred EEeecCCCCCHHHHHHHHhh
Confidence 99999999999999999875
No 125
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.83 E-value=1.1e-19 Score=165.64 Aligned_cols=157 Identities=17% Similarity=0.177 Sum_probs=104.3
Q ss_pred ccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEE--EeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhh
Q 014942 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~--~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~ 192 (415)
..+|+++|++|||||||+++|.+..+.. ...+....+..... +......+.+|||||. ..+..+ +..+
T Consensus 6 ~~kivvvG~~~vGKTsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~--~~~~~~-------~~~~ 75 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFADNTFSG-SYITTIGVDFKIRTVEINGERVKLQIWDTAGQ--ERFRTI-------TSTY 75 (199)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCC-CcCccccceeEEEEEEECCEEEEEEEEeCCCc--hhHHHH-------HHHH
Confidence 4589999999999999999999887641 11111111211112 2233457899999994 333332 3445
Q ss_pred hcccceEEEEecCCCCC--chHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHH-HHHHHHHhhcCCCccEEEcccCCCC
Q 014942 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGH 269 (415)
Q Consensus 193 ~~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g~ 269 (415)
+..+|++++|+|++++. .....|+..+ .......|+++|+||+|+.....+ ......+....+ .+++++||++|.
T Consensus 76 ~~~a~~iilv~D~~~~~s~~~~~~~~~~i-~~~~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~-~~~~e~Sa~~~~ 153 (199)
T cd04110 76 YRGTHGVIVVYDVTNGESFVNVKRWLQEI-EQNCDDVCKVLVGNKNDDPERKVVETEDAYKFAGQMG-ISLFETSAKENI 153 (199)
T ss_pred hCCCcEEEEEEECCCHHHHHHHHHHHHHH-HHhCCCCCEEEEEECcccccccccCHHHHHHHHHHcC-CEEEEEECCCCc
Confidence 78999999999998754 3333444433 332357899999999999754322 122222222223 579999999999
Q ss_pred CHHHHHHHHHhhCC
Q 014942 270 GVEDIRDWILTKLP 283 (415)
Q Consensus 270 gv~eL~~~L~~~l~ 283 (415)
||++++++|.+.+.
T Consensus 154 gi~~lf~~l~~~~~ 167 (199)
T cd04110 154 NVEEMFNCITELVL 167 (199)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999998764
No 126
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.83 E-value=1.8e-19 Score=169.22 Aligned_cols=176 Identities=23% Similarity=0.268 Sum_probs=138.0
Q ss_pred ccccCCCCCCccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHH
Q 014942 105 FDYASHPNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSM 184 (415)
Q Consensus 105 ~~~~~~~~~~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~ 184 (415)
+..+|.-+...+.|+|.|+||||||||++++.+.+.. +.++|.||+....+.+..+..+++++||||+.+.+...++..
T Consensus 158 l~~LP~Idp~~pTivVaG~PNVGKSSlv~~lT~AkpE-vA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~I 236 (346)
T COG1084 158 LKKLPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKPE-VAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEI 236 (346)
T ss_pred HhcCCCCCCCCCeEEEecCCCCcHHHHHHHHhcCCCc-cCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHH
Confidence 4455666677889999999999999999999998875 789999999999999999999999999999998777776666
Q ss_pred HHHHHHhhhcccceEEEEecCCCCC----chHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHHHHHHHhhcCCCccE
Q 014942 185 MMKNVRSAGINADCIVVLVDACKAP----ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEV 260 (415)
Q Consensus 185 ~~~~~~~~~~~aD~ii~VvD~~~~~----~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i 260 (415)
-.+.+...-.-.++|+|++|.+... +.+...+.+.... .+.|+++|+||+|....+.+.+....+.... ....
T Consensus 237 E~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~--f~~p~v~V~nK~D~~~~e~~~~~~~~~~~~~-~~~~ 313 (346)
T COG1084 237 ERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKEL--FKAPIVVVINKIDIADEEKLEEIEASVLEEG-GEEP 313 (346)
T ss_pred HHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHh--cCCCeEEEEecccccchhHHHHHHHHHHhhc-cccc
Confidence 5555555555689999999998654 3444444444333 4489999999999988777766665544433 3345
Q ss_pred EEcccCCCCCHHHHHHHHHhhCCC
Q 014942 261 IPVSAKYGHGVEDIRDWILTKLPL 284 (415)
Q Consensus 261 ~~vSA~~g~gv~eL~~~L~~~l~~ 284 (415)
..+|+..+.+++.+.+.+...+.+
T Consensus 314 ~~~~~~~~~~~d~~~~~v~~~a~~ 337 (346)
T COG1084 314 LKISATKGCGLDKLREEVRKTALE 337 (346)
T ss_pred cceeeeehhhHHHHHHHHHHHhhc
Confidence 778999999999999888887554
No 127
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.83 E-value=6.5e-20 Score=157.77 Aligned_cols=161 Identities=21% Similarity=0.215 Sum_probs=116.7
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCceeee-eCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhc
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQKLSIV-TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~~~~~-~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (415)
.+|.++|.+|||||||+|++...++... ..+.+...-.....+...-..+.+|||+| +++|.++...+ ++
T Consensus 10 LKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAG--QERFqsLg~aF-------YR 80 (210)
T KOG0394|consen 10 LKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAG--QERFQSLGVAF-------YR 80 (210)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEeccc--HHHhhhcccce-------ec
Confidence 4999999999999999999998876421 11222211122223444556889999999 78888886544 89
Q ss_pred ccceEEEEecCCCC--CchHHHHHHHHhcccC----CCCCEEEEEeCCCCCCh--h-HHHHHHHHHhhcCCCccEEEccc
Q 014942 195 NADCIVVLVDACKA--PERIDEILEEGVGDHK----DKLPILLVLNKKDLIKP--G-EIAKKLEWYEKFTDVDEVIPVSA 265 (415)
Q Consensus 195 ~aD~ii~VvD~~~~--~~~~~~~l~~~l~~~~----~~~piilV~NK~Dl~~~--~-~~~~~~~~~~~~~~~~~i~~vSA 265 (415)
.+|++++|+|...+ ++.+..|-.+.+.... ...|+||++||+|+... + ......+.+....+..|+|++||
T Consensus 81 gaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSA 160 (210)
T KOG0394|consen 81 GADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSA 160 (210)
T ss_pred CCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecc
Confidence 99999999998754 4667777666665432 46799999999999652 2 22233344444556779999999
Q ss_pred CCCCCHHHHHHHHHhhCCCC
Q 014942 266 KYGHGVEDIRDWILTKLPLG 285 (415)
Q Consensus 266 ~~g~gv~eL~~~L~~~l~~~ 285 (415)
+.+.||++.|+.+...+...
T Consensus 161 K~~~NV~~AFe~ia~~aL~~ 180 (210)
T KOG0394|consen 161 KEATNVDEAFEEIARRALAN 180 (210)
T ss_pred cccccHHHHHHHHHHHHHhc
Confidence 99999999999999877543
No 128
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.83 E-value=2.2e-19 Score=155.52 Aligned_cols=154 Identities=21% Similarity=0.237 Sum_probs=102.3
Q ss_pred EEEEEecCCCCHHHHHHHHhCCceeee-eCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhcc
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQKLSIV-TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~~~~~~-~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (415)
+|+++|.+|||||||+|+|.+..+... ....+.+..............+.+||+||. ..+. ..+..++++
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~--~~~~-------~~~~~~~~~ 72 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQ--ERFR-------SITPSYYRG 72 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCCh--HHHH-------HHHHHHhcC
Confidence 799999999999999999998887543 112222222222223334568899999994 2222 234556789
Q ss_pred cceEEEEecCCCCC--chHHHHHHHHhcccCCCCCEEEEEeCCCCC-ChhHHHHHHHHHhhcCCCccEEEcccCCCCCHH
Q 014942 196 ADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLI-KPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVE 272 (415)
Q Consensus 196 aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~~~~piilV~NK~Dl~-~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gv~ 272 (415)
+|++++|+|++++. .....++...........|+++|+||+|+. ...........+... ...+++++||++|.|++
T Consensus 73 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~sa~~~~~i~ 151 (159)
T cd00154 73 AHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKE-NGLLFFETSAKTGENVE 151 (159)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHH-cCCeEEEEecCCCCCHH
Confidence 99999999998743 333444444433322569999999999996 222122222222222 24589999999999999
Q ss_pred HHHHHHHh
Q 014942 273 DIRDWILT 280 (415)
Q Consensus 273 eL~~~L~~ 280 (415)
+++++|.+
T Consensus 152 ~~~~~i~~ 159 (159)
T cd00154 152 ELFQSLAE 159 (159)
T ss_pred HHHHHHhC
Confidence 99999863
No 129
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.83 E-value=2e-19 Score=157.03 Aligned_cols=155 Identities=22% Similarity=0.319 Sum_probs=101.7
Q ss_pred EEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEE--eCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhc
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC--SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~--~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (415)
+|+++|.+|||||||+|+|++..+.. ...+.++.......+ ......+.+||||| +..+..+ +..++.
T Consensus 2 ki~i~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g--~~~~~~~-------~~~~~~ 71 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVENKFNE-KHESTTQASFFQKTVNIGGKRIDLAIWDTAG--QERYHAL-------GPIYYR 71 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC-CcCCccceeEEEEEEEECCEEEEEEEEECCc--hHHHHHh-------hHHHhc
Confidence 79999999999999999999887642 222222222222222 23345789999999 3333333 333468
Q ss_pred ccceEEEEecCCCCC--chHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHH-HHHHHHHhhcCCCccEEEcccCCCCCH
Q 014942 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGHGV 271 (415)
Q Consensus 195 ~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g~gv 271 (415)
.+|++++|+|++++. +....++.++......+.|+++|+||+|+.....+ ......+.... ..+++++||++|.|+
T Consensus 72 ~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~gi 150 (162)
T cd04123 72 DADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSV-GAKHFETSAKTGKGI 150 (162)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHc-CCEEEEEeCCCCCCH
Confidence 899999999998654 23333333333332247899999999999753322 11122222222 247899999999999
Q ss_pred HHHHHHHHhhC
Q 014942 272 EDIRDWILTKL 282 (415)
Q Consensus 272 ~eL~~~L~~~l 282 (415)
++++++|.+.+
T Consensus 151 ~~~~~~l~~~~ 161 (162)
T cd04123 151 EELFLSLAKRM 161 (162)
T ss_pred HHHHHHHHHHh
Confidence 99999998754
No 130
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.82 E-value=1.5e-19 Score=160.58 Aligned_cols=156 Identities=20% Similarity=0.191 Sum_probs=101.4
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEE--EeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhh
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~--~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~ 193 (415)
.+|+++|++|||||||+++|.+..+.. .+.++........ +......+.+|||||. +.+..+ ...++
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~-------~~~~~ 70 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPE--VYVPTVFENYVADIEVDGKQVELALWDTAGQ--EDYDRL-------RPLSY 70 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCC--CCCCccccceEEEEEECCEEEEEEEEeCCCc--hhhhhc-------ccccc
Confidence 489999999999999999999877642 2223332222222 2334457899999994 333322 22346
Q ss_pred cccceEEEEecCCCCC--chHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHH-------------HHHHHhhcCCCc
Q 014942 194 INADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK-------------KLEWYEKFTDVD 258 (415)
Q Consensus 194 ~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~-------------~~~~~~~~~~~~ 258 (415)
.++|++++|+|+++.. ......+...+.....+.|+++|+||+|+........ ....+....+..
T Consensus 71 ~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~ 150 (175)
T cd01870 71 PDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAF 150 (175)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCc
Confidence 8999999999987643 2332223333333235789999999999865322111 111222223345
Q ss_pred cEEEcccCCCCCHHHHHHHHHhhC
Q 014942 259 EVIPVSAKYGHGVEDIRDWILTKL 282 (415)
Q Consensus 259 ~i~~vSA~~g~gv~eL~~~L~~~l 282 (415)
++++|||++|.|+++++++|.+.+
T Consensus 151 ~~~~~Sa~~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 151 GYMECSAKTKEGVREVFEMATRAA 174 (175)
T ss_pred EEEEeccccCcCHHHHHHHHHHHh
Confidence 799999999999999999998754
No 131
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.82 E-value=1.1e-19 Score=161.21 Aligned_cols=158 Identities=18% Similarity=0.183 Sum_probs=103.8
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEe-E--EEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHH
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHR-I--LGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~-~--~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~ 190 (415)
+..+|+++|.+|||||||++++++..+. +..+.+|+... . ...+......+.+|||+|. ..+..+ ..
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~-~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~--~~~~~~-------~~ 72 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSFS-LNAYSPTIKPRYAVNTVEVYGQEKYLILREVGED--EVAILL-------ND 72 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCCC-cccCCCccCcceEEEEEEECCeEEEEEEEecCCc--cccccc-------ch
Confidence 4568999999999999999999998874 12333443221 1 1122333467889999994 333322 23
Q ss_pred hhhcccceEEEEecCCCCCc--hHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHH-HHHHHHHhhcCCCccEEEcccCC
Q 014942 191 SAGINADCIVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKY 267 (415)
Q Consensus 191 ~~~~~aD~ii~VvD~~~~~~--~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~ 267 (415)
.++.++|++++|+|++++.. ....++. .+.. ..+.|+++|+||+|+.+.... ......+....+...++++||++
T Consensus 73 ~~~~~~d~~llv~d~~~~~s~~~~~~~~~-~~~~-~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 150 (169)
T cd01892 73 AELAACDVACLVYDSSDPKSFSYCAEVYK-KYFM-LGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKL 150 (169)
T ss_pred hhhhcCCEEEEEEeCCCHHHHHHHHHHHH-Hhcc-CCCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEecc
Confidence 34789999999999977532 1222332 2222 147999999999999643321 11122333333444569999999
Q ss_pred CCCHHHHHHHHHhhCC
Q 014942 268 GHGVEDIRDWILTKLP 283 (415)
Q Consensus 268 g~gv~eL~~~L~~~l~ 283 (415)
|.|++++++.|.+.+.
T Consensus 151 ~~~v~~lf~~l~~~~~ 166 (169)
T cd01892 151 GDSSNELFTKLATAAQ 166 (169)
T ss_pred CccHHHHHHHHHHHhh
Confidence 9999999999998764
No 132
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.82 E-value=1.3e-19 Score=155.53 Aligned_cols=140 Identities=17% Similarity=0.219 Sum_probs=91.5
Q ss_pred EEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhccc
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~a 196 (415)
+|+++|++|||||||+|+|.+..+. ...|.. .... -.+|||||... .. ..+.+.....++++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~----~~~t~~------~~~~---~~~iDt~G~~~----~~-~~~~~~~~~~~~~a 63 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL----YKKTQA------VEYN---DGAIDTPGEYV----EN-RRLYSALIVTAADA 63 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc----ccccee------EEEc---CeeecCchhhh----hh-HHHHHHHHHHhhcC
Confidence 7999999999999999999987653 111111 1111 16899999521 11 11122233457899
Q ss_pred ceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHHHHHHHhhcCCCccEEEcccCCCCCHHHHHH
Q 014942 197 DCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRD 276 (415)
Q Consensus 197 D~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gv~eL~~ 276 (415)
|++++|+|++++.......+.... ..|+++|+||+|+.+.....+....+.+..+..+++++||++|.|++++++
T Consensus 64 d~vilv~d~~~~~s~~~~~~~~~~-----~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 138 (142)
T TIGR02528 64 DVIALVQSATDPESRFPPGFASIF-----VKPVIGLVTKIDLAEADVDIERAKELLETAGAEPIFEISSVDEQGLEALVD 138 (142)
T ss_pred CEEEEEecCCCCCcCCChhHHHhc-----cCCeEEEEEeeccCCcccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHH
Confidence 999999999877643333333321 349999999999965322222222222223344799999999999999999
Q ss_pred HHH
Q 014942 277 WIL 279 (415)
Q Consensus 277 ~L~ 279 (415)
+|.
T Consensus 139 ~l~ 141 (142)
T TIGR02528 139 YLN 141 (142)
T ss_pred HHh
Confidence 885
No 133
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.82 E-value=2.8e-19 Score=168.01 Aligned_cols=155 Identities=19% Similarity=0.261 Sum_probs=103.8
Q ss_pred EEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEe--CCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhc
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~--~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (415)
+|+++|.+|||||||+++|++..+. ..+.+|+.+.....+. ...+.+.||||+|. ..+..+. ..++.
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~~f~--~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~--~~~~~~~-------~~~~~ 70 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGGRFE--EQYTPTIEDFHRKLYSIRGEVYQLDILDTSGN--HPFPAMR-------RLSIL 70 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcCCCC--CCCCCChhHhEEEEEEECCEEEEEEEEECCCC--hhhhHHH-------HHHhc
Confidence 7999999999999999999987764 2333444333333333 33467889999994 3443332 23467
Q ss_pred ccceEEEEecCCCCC--chHHHHHHHHhcc---------cCCCCCEEEEEeCCCCCChhH--HHHHHHHHhhcCCCccEE
Q 014942 195 NADCIVVLVDACKAP--ERIDEILEEGVGD---------HKDKLPILLVLNKKDLIKPGE--IAKKLEWYEKFTDVDEVI 261 (415)
Q Consensus 195 ~aD~ii~VvD~~~~~--~~~~~~l~~~l~~---------~~~~~piilV~NK~Dl~~~~~--~~~~~~~~~~~~~~~~i~ 261 (415)
.+|++|+|+|+++.. +....++.++... ...+.|+|+|+||+|+..... ..+..+.+... ....++
T Consensus 71 ~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~-~~~~~~ 149 (247)
T cd04143 71 TGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGD-ENCAYF 149 (247)
T ss_pred cCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhc-CCCEEE
Confidence 899999999998653 3333333333221 124789999999999974222 22222322222 235799
Q ss_pred EcccCCCCCHHHHHHHHHhhCC
Q 014942 262 PVSAKYGHGVEDIRDWILTKLP 283 (415)
Q Consensus 262 ~vSA~~g~gv~eL~~~L~~~l~ 283 (415)
++||++|.|+++++++|.+.+.
T Consensus 150 evSAktg~gI~elf~~L~~~~~ 171 (247)
T cd04143 150 EVSAKKNSNLDEMFRALFSLAK 171 (247)
T ss_pred EEeCCCCCCHHHHHHHHHHHhc
Confidence 9999999999999999998764
No 134
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.82 E-value=1.4e-19 Score=188.26 Aligned_cols=203 Identities=19% Similarity=0.195 Sum_probs=133.0
Q ss_pred CCccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCe-eEEEEeCCCCchhhhhhHhHHHHHHHHh
Q 014942 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEY-QMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (415)
Q Consensus 113 ~~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~-~l~liDtpG~~~~~~~~l~~~~~~~~~~ 191 (415)
.|+++|+++|++|+|||||+++|.+.++.. ...++.|.+.....+...+. .+.||||||+ ..+..+ ...
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~-~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGh--e~F~~~-------r~r 154 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQ-GEAGGITQHIGAYHVENEDGKMITFLDTPGH--EAFTSM-------RAR 154 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCccc-ccCCceeecceEEEEEECCCcEEEEEECCCC--cchhhH-------HHh
Confidence 377899999999999999999999887652 34456676654444444333 8999999994 444433 234
Q ss_pred hhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCCh--hHHHHHHHHHh----hcCCCccEEEccc
Q 014942 192 AGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP--GEIAKKLEWYE----KFTDVDEVIPVSA 265 (415)
Q Consensus 192 ~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~--~~~~~~~~~~~----~~~~~~~i~~vSA 265 (415)
.+..+|++++|+|++++........+..... .+.|+++++||+|+... ..+........ ......+++++||
T Consensus 155 ga~~aDiaILVVda~dgv~~qT~e~i~~~~~--~~vPiIVviNKiDl~~~~~e~v~~~L~~~g~~~~~~~~~~~~v~iSA 232 (587)
T TIGR00487 155 GAKVTDIVVLVVAADDGVMPQTIEAISHAKA--ANVPIIVAINKIDKPEANPDRVKQELSEYGLVPEDWGGDTIFVPVSA 232 (587)
T ss_pred hhccCCEEEEEEECCCCCCHhHHHHHHHHHH--cCCCEEEEEECcccccCCHHHHHHHHHHhhhhHHhcCCCceEEEEEC
Confidence 4789999999999998776655555555544 67999999999999642 22222221111 1112347999999
Q ss_pred CCCCCHHHHHHHHHhhCCCCCCCCCCCCccccCCchhHHHHHHHHHHHHhhcCCCCCceEEEEEEEEEecCCCee
Q 014942 266 KYGHGVEDIRDWILTKLPLGPAYYPKFQDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTRPTAKD 340 (415)
Q Consensus 266 ~~g~gv~eL~~~L~~~l~~~~~~~~~~~~~~t~~~~~~~i~eiireki~~~~~~eipys~~v~i~~~~~~~~~~~ 340 (415)
++|.|+++|+++|.....- .. +.. ..+.|.+..+-++ ...+..|..+.+.+..|+.+.+..+
T Consensus 233 ktGeGI~eLl~~I~~~~~~-~~-l~~----~~~~~~~~~V~ev-------~~~~g~G~v~~~~V~~GtL~~Gd~i 294 (587)
T TIGR00487 233 LTGDGIDELLDMILLQSEV-EE-LKA----NPNGQASGVVIEA-------QLDKGRGPVATVLVQSGTLRVGDIV 294 (587)
T ss_pred CCCCChHHHHHhhhhhhhh-cc-ccC----CCCCCceeEEEEE-------EEeCCCcEEEEEEEEeCEEeCCCEE
Confidence 9999999999998753211 00 000 0112222212111 1245678888889999988876543
No 135
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.82 E-value=2.3e-19 Score=162.27 Aligned_cols=155 Identities=19% Similarity=0.272 Sum_probs=101.5
Q ss_pred EEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeE-E--EEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhh
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRI-L--GICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~-~--~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~ 193 (415)
+|+++|.+|||||||+++|++..+.. ..+..|..... . ..+......+.+|||||. ..+..+ ...++
T Consensus 2 ki~vvG~~~vGKSsLi~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~--~~~~~~-------~~~~~ 71 (193)
T cd04118 2 KVVMLGKESVGKTSLVERYVHHRFLV-GPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGS--ERYEAM-------SRIYY 71 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCcCC-cCcccceeeEEEEEEEEECCEEEEEEEEECCCc--hhhhhh-------hHhhc
Confidence 79999999999999999999887642 22333332221 1 222333456789999994 333333 23347
Q ss_pred cccceEEEEecCCCCC--chHHHHHHHHhcccCCCCCEEEEEeCCCCCChh----HH-HHHHHHHhhcCCCccEEEcccC
Q 014942 194 INADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG----EI-AKKLEWYEKFTDVDEVIPVSAK 266 (415)
Q Consensus 194 ~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~----~~-~~~~~~~~~~~~~~~i~~vSA~ 266 (415)
..+|++++|+|+++.. .....|+.. +.....+.|+++|+||+|+.... .+ ......+....+ .+++++||+
T Consensus 72 ~~~d~iilv~d~~~~~s~~~~~~~~~~-i~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~ 149 (193)
T cd04118 72 RGAKAAIVCYDLTDSSSFERAKFWVKE-LQNLEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIK-AQHFETSSK 149 (193)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHH-HHhcCCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcC-CeEEEEeCC
Confidence 8999999999997653 222333333 33333578999999999986422 11 111122222222 478999999
Q ss_pred CCCCHHHHHHHHHhhCC
Q 014942 267 YGHGVEDIRDWILTKLP 283 (415)
Q Consensus 267 ~g~gv~eL~~~L~~~l~ 283 (415)
+|.|+++|+++|.+.+.
T Consensus 150 ~~~gv~~l~~~i~~~~~ 166 (193)
T cd04118 150 TGQNVDELFQKVAEDFV 166 (193)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999999998663
No 136
>PLN03110 Rab GTPase; Provisional
Probab=99.82 E-value=1.6e-19 Score=166.61 Aligned_cols=157 Identities=17% Similarity=0.180 Sum_probs=106.2
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEE--EeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhh
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~--~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~ 193 (415)
.+|+++|++|||||||+++|++..+.. ...+....+..... +......+.+|||||. ..+..+ +..++
T Consensus 13 ~Ki~ivG~~~vGKStLi~~l~~~~~~~-~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~--~~~~~~-------~~~~~ 82 (216)
T PLN03110 13 FKIVLIGDSGVGKSNILSRFTRNEFCL-ESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQ--ERYRAI-------TSAYY 82 (216)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCceeEEEEEEEEEECCEEEEEEEEECCCc--HHHHHH-------HHHHh
Confidence 589999999999999999999887642 22222222322222 3334468999999993 333332 34557
Q ss_pred cccceEEEEecCCCCC--chHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHH-HHHHHHHhhcCCCccEEEcccCCCCC
Q 014942 194 INADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGHG 270 (415)
Q Consensus 194 ~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g~g 270 (415)
+.++++|+|+|+++.. .....|+..+......+.|+++|+||+|+.....+ .+....+.... ..+++++||++|.|
T Consensus 83 ~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~-~~~~~e~SA~~g~~ 161 (216)
T PLN03110 83 RGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKE-GLSFLETSALEATN 161 (216)
T ss_pred CCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHc-CCEEEEEeCCCCCC
Confidence 8999999999997643 33334444333322357999999999998654322 12223333322 35899999999999
Q ss_pred HHHHHHHHHhhCC
Q 014942 271 VEDIRDWILTKLP 283 (415)
Q Consensus 271 v~eL~~~L~~~l~ 283 (415)
+++++++|.+.+.
T Consensus 162 v~~lf~~l~~~i~ 174 (216)
T PLN03110 162 VEKAFQTILLEIY 174 (216)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988764
No 137
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.82 E-value=2.6e-19 Score=162.99 Aligned_cols=150 Identities=19% Similarity=0.259 Sum_probs=100.1
Q ss_pred EecCCCCHHHHHHHHhCCceee-eeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhcccceE
Q 014942 121 LGKPNVGKSTLANQMIGQKLSI-VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCI 199 (415)
Q Consensus 121 vG~~~vGKSSLln~l~~~~~~~-~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD~i 199 (415)
+|.+|||||||+++++...+.. .....+.+.......+......+.+||||| ++.+..+ +..+++.+|++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G--~e~~~~l-------~~~~~~~ad~~ 71 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAG--QEKFGGL-------RDGYYIQGQCA 71 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCC--chhhhhh-------hHHHhcCCCEE
Confidence 6999999999999999776531 111112222222222334567899999999 4444433 34458899999
Q ss_pred EEEecCCCCC--chHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHHHHHHHhhcCCCccEEEcccCCCCCHHHHHHH
Q 014942 200 VVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDW 277 (415)
Q Consensus 200 i~VvD~~~~~--~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gv~eL~~~ 277 (415)
|+|+|++++. .....|+..+.+. ..+.|+++|+||+|+.......+... +.... ..++++|||++|.||+++|.+
T Consensus 72 ilV~D~t~~~S~~~i~~w~~~i~~~-~~~~piilvgNK~Dl~~~~v~~~~~~-~~~~~-~~~~~e~SAk~~~~v~~~F~~ 148 (200)
T smart00176 72 IIMFDVTARVTYKNVPNWHRDLVRV-CENIPIVLCGNKVDVKDRKVKAKSIT-FHRKK-NLQYYDISAKSNYNFEKPFLW 148 (200)
T ss_pred EEEEECCChHHHHHHHHHHHHHHHh-CCCCCEEEEEECcccccccCCHHHHH-HHHHc-CCEEEEEeCCCCCCHHHHHHH
Confidence 9999998764 3344444444332 35799999999999854321122222 22222 347999999999999999999
Q ss_pred HHhhC
Q 014942 278 ILTKL 282 (415)
Q Consensus 278 L~~~l 282 (415)
|++.+
T Consensus 149 l~~~i 153 (200)
T smart00176 149 LARKL 153 (200)
T ss_pred HHHHH
Confidence 99865
No 138
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.82 E-value=3.1e-19 Score=155.51 Aligned_cols=154 Identities=21% Similarity=0.231 Sum_probs=103.9
Q ss_pred EEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCC--CeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhc
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~--~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (415)
+|+++|++|||||||+++|++..+ ......++.+.....+... ...+.+||+||. ..+..+ ....+.
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~--~~~~~~-------~~~~~~ 69 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTF--VEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQ--EEFSAM-------RDLYIR 69 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC--CcCcCCChhHeEEEEEEECCEEEEEEEEECCCh--HHHHHH-------HHHHHh
Confidence 589999999999999999998774 3444555544444444433 467899999994 333222 334477
Q ss_pred ccceEEEEecCCCCC--chHHHHHHHHhcccC-CCCCEEEEEeCCCCCChhHH-HHHHHHHhhcCCCccEEEcccCCCCC
Q 014942 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHK-DKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGHG 270 (415)
Q Consensus 195 ~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~-~~~piilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g~g 270 (415)
.+|++++|+|.+++. .....++..+..... ...|+++|+||+|+...... .+....+..... .+++++||++|.|
T Consensus 70 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~S~~~~~~ 148 (160)
T cd00876 70 QGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWG-CPFIETSAKDNIN 148 (160)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcC-CcEEEeccCCCCC
Confidence 899999999987643 223333333333221 47999999999999763221 112222222222 5899999999999
Q ss_pred HHHHHHHHHhhC
Q 014942 271 VEDIRDWILTKL 282 (415)
Q Consensus 271 v~eL~~~L~~~l 282 (415)
+++++++|.+.+
T Consensus 149 i~~l~~~l~~~i 160 (160)
T cd00876 149 IDEVFKLLVREI 160 (160)
T ss_pred HHHHHHHHHhhC
Confidence 999999998753
No 139
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.82 E-value=3.4e-19 Score=153.69 Aligned_cols=157 Identities=27% Similarity=0.391 Sum_probs=105.7
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCC--eeEEEEeCCCCchhhhhhHhHHHHHHHHhhh
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~ 193 (415)
.+|+++|.+|+|||||+|+|.+.. ......+.++.+.....+..++ ..+.+|||||. ..+..+.......+...+
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~--~~~~~~~~~~~~~~~~~i 78 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK-FITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQ--EDYRAIRRLYYRAVESSL 78 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-CcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCc--ccchHHHHHHHhhhhEEE
Confidence 489999999999999999999988 4456667777777766555566 78899999994 444444444433343444
Q ss_pred cccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHHHHHHHhhcCCCccEEEcccCCCCCHHH
Q 014942 194 INADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVED 273 (415)
Q Consensus 194 ~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gv~e 273 (415)
..+|++++|+|..+........+..... .+.|+++|+||+|+............+.. .+..+++++||++|.|+.+
T Consensus 79 ~~~d~~~~v~~~~~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-~~~~~~~~~sa~~~~gv~~ 154 (161)
T TIGR00231 79 RVFDIVILVLDVEEILEKQTKEIIHHAE---SNVPIILVGNKIDLRDAKLKTHVAFLFAK-LNGEPIIPLSAETGKNIDS 154 (161)
T ss_pred EEEEEeeeehhhhhHhHHHHHHHHHhcc---cCCcEEEEEEcccCCcchhhHHHHHHHhh-ccCCceEEeecCCCCCHHH
Confidence 4555555555544333223333333221 37899999999999764422222233333 3445799999999999999
Q ss_pred HHHHHH
Q 014942 274 IRDWIL 279 (415)
Q Consensus 274 L~~~L~ 279 (415)
++++|.
T Consensus 155 ~~~~l~ 160 (161)
T TIGR00231 155 AFKIVE 160 (161)
T ss_pred HHHHhh
Confidence 999874
No 140
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.82 E-value=3.8e-19 Score=156.97 Aligned_cols=157 Identities=19% Similarity=0.197 Sum_probs=102.8
Q ss_pred ccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCC--CeeEEEEeCCCCchhhhhhHhHHHHHHHHhh
Q 014942 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~--~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~ 192 (415)
..+|+++|++|||||||+++|.+..+.. ...+..+.+.....+... ...+.+|||||. ..+.. ....+
T Consensus 7 ~~~v~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~--~~~~~-------~~~~~ 76 (169)
T cd04114 7 LFKIVLIGNAGVGKTCLVRRFTQGLFPP-GQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQ--ERFRS-------ITQSY 76 (169)
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCceeeEEEEEEEEECCEEEEEEEEECCCc--HHHHH-------HHHHH
Confidence 4689999999999999999998765431 122222223332223333 356889999994 33322 23445
Q ss_pred hcccceEEEEecCCCCC--chHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHH-HHHHHHhhcCCCccEEEcccCCCC
Q 014942 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYGH 269 (415)
Q Consensus 193 ~~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~i~~vSA~~g~ 269 (415)
+..+|++++|+|++++. .....++..+......+.|+++|+||+|+.....+. .....+..... .+++++||++|.
T Consensus 77 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~-~~~~~~Sa~~~~ 155 (169)
T cd04114 77 YRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQD-MYYLETSAKESD 155 (169)
T ss_pred hcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcC-CeEEEeeCCCCC
Confidence 78999999999997643 223333332222122478999999999997543322 22333333333 579999999999
Q ss_pred CHHHHHHHHHhhC
Q 014942 270 GVEDIRDWILTKL 282 (415)
Q Consensus 270 gv~eL~~~L~~~l 282 (415)
|+++++++|.+.+
T Consensus 156 gv~~l~~~i~~~~ 168 (169)
T cd04114 156 NVEKLFLDLACRL 168 (169)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998753
No 141
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.82 E-value=2.9e-19 Score=157.96 Aligned_cols=156 Identities=17% Similarity=0.202 Sum_probs=103.8
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEE--EeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhh
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~--~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~ 193 (415)
.+|+++|.+|||||||++++.+..+. .....++....... +......+.+|||||. ..+..+. ..++
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~~-------~~~~ 70 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFI--ESYDPTIEDSYRKQVEIDGRQCDLEILDTAGT--EQFTAMR-------ELYI 70 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC--cccCCcchheEEEEEEECCEEEEEEEEeCCCc--ccchhhh-------HHHH
Confidence 37999999999999999999987763 22333333332222 2334467899999994 4444433 3346
Q ss_pred cccceEEEEecCCCCC--chHHHHHHHHhcc-cCCCCCEEEEEeCCCCCChhHHH-HHHHHHhhcCCCccEEEcccCCCC
Q 014942 194 INADCIVVLVDACKAP--ERIDEILEEGVGD-HKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYGH 269 (415)
Q Consensus 194 ~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~-~~~~~piilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~i~~vSA~~g~ 269 (415)
..++++++|+|.+++. .....+.....+. ...+.|+++|+||+|+.....+. .....+....+..+++++||++|.
T Consensus 71 ~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~ 150 (168)
T cd04177 71 KSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRT 150 (168)
T ss_pred hhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCC
Confidence 7899999999988643 3333333333221 12579999999999997543221 112222233344589999999999
Q ss_pred CHHHHHHHHHhhC
Q 014942 270 GVEDIRDWILTKL 282 (415)
Q Consensus 270 gv~eL~~~L~~~l 282 (415)
|+++++++|++.+
T Consensus 151 ~i~~~f~~i~~~~ 163 (168)
T cd04177 151 NVDEVFIDLVRQI 163 (168)
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998765
No 142
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=7e-20 Score=179.37 Aligned_cols=168 Identities=29% Similarity=0.334 Sum_probs=129.6
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~ 193 (415)
..+.|+|+|+||||||||+|+|......+|++.+||||+.+...++..+..+.++||+|+.++..+......+..++..+
T Consensus 267 ~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~ 346 (531)
T KOG1191|consen 267 SGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKRI 346 (531)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHHH
Confidence 44699999999999999999999999999999999999999999999999999999999977677778888899999999
Q ss_pred cccceEEEEecCCCCCchHHHHHHHHhcc----c------CCCCCEEEEEeCCCCCCh-hHHHH----HHHHHhhcCCCc
Q 014942 194 INADCIVVLVDACKAPERIDEILEEGVGD----H------KDKLPILLVLNKKDLIKP-GEIAK----KLEWYEKFTDVD 258 (415)
Q Consensus 194 ~~aD~ii~VvD~~~~~~~~~~~l~~~l~~----~------~~~~piilV~NK~Dl~~~-~~~~~----~~~~~~~~~~~~ 258 (415)
..+|++++|+|+.......+..+.+.+.. . ..+.|++++.||+|+..+ ..... .... .....+.
T Consensus 347 ~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~-~~~~~~~ 425 (531)
T KOG1191|consen 347 ERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSA-EGRSVFP 425 (531)
T ss_pred hhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceecccc-ccCcccc
Confidence 99999999999954442222222222221 1 135799999999999765 11111 0111 1112233
Q ss_pred cEEEcccCCCCCHHHHHHHHHhhC
Q 014942 259 EVIPVSAKYGHGVEDIRDWILTKL 282 (415)
Q Consensus 259 ~i~~vSA~~g~gv~eL~~~L~~~l 282 (415)
.+..+|+++++|+..|.+.|.+.+
T Consensus 426 i~~~vs~~tkeg~~~L~~all~~~ 449 (531)
T KOG1191|consen 426 IVVEVSCTTKEGCERLSTALLNIV 449 (531)
T ss_pred eEEEeeechhhhHHHHHHHHHHHH
Confidence 445699999999999999988755
No 143
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.82 E-value=4.4e-19 Score=157.19 Aligned_cols=159 Identities=21% Similarity=0.230 Sum_probs=104.1
Q ss_pred ccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEE--EeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhh
Q 014942 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~--~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~ 192 (415)
..+|+++|++|||||||++++++..+.. ...+....+..... +......+.+|||||. ..+.. ..+..+
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~------~~~~~~ 72 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPE-RTEATIGVDFRERTVEIDGERIKVQLWDTAGQ--ERFRK------SMVQHY 72 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCC-ccccceeEEEEEEEEEECCeEEEEEEEeCCCh--HHHHH------hhHHHh
Confidence 4589999999999999999999876532 11222222222222 3334468999999994 33221 113445
Q ss_pred hcccceEEEEecCCCCC--chHHHHHHHHhccc-CCCCCEEEEEeCCCCCChhHHH-HHHHHHhhcCCCccEEEcccCC-
Q 014942 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKY- 267 (415)
Q Consensus 193 ~~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~-~~~~piilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~i~~vSA~~- 267 (415)
++.+|++++|+|++++. .....|+....... ..+.|+++|+||+|+.....+. .....+..... .+++++||++
T Consensus 73 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~e~Sa~~~ 151 (170)
T cd04115 73 YRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHS-MPLFETSAKDP 151 (170)
T ss_pred hcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcC-CcEEEEeccCC
Confidence 78999999999998654 33334443332221 2579999999999987543321 22223333322 5899999999
Q ss_pred --CCCHHHHHHHHHhhCC
Q 014942 268 --GHGVEDIRDWILTKLP 283 (415)
Q Consensus 268 --g~gv~eL~~~L~~~l~ 283 (415)
+.|++++|..|++.+.
T Consensus 152 ~~~~~i~~~f~~l~~~~~ 169 (170)
T cd04115 152 SENDHVEAIFMTLAHKLK 169 (170)
T ss_pred cCCCCHHHHHHHHHHHhh
Confidence 8999999999987653
No 144
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.81 E-value=4.7e-19 Score=176.47 Aligned_cols=190 Identities=24% Similarity=0.311 Sum_probs=136.9
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEe------------------------CCCeeEEEEeCC
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS------------------------GPEYQMILYDTP 171 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~------------------------~~~~~l~liDtp 171 (415)
.+|+|+|.||||||||+|+|++.... ++.+|++|.++..+... ....++.++|||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~-~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~a 80 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVE-IANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVA 80 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCccc-ccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcC
Confidence 47999999999999999999998764 57889999887776533 122568899999
Q ss_pred CCchhhhhhHhHHHHHHHHhhhcccceEEEEecCCCC---------------CchH-------HH---------------
Q 014942 172 GIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKA---------------PERI-------DE--------------- 214 (415)
Q Consensus 172 G~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~---------------~~~~-------~~--------------- 214 (415)
|+...... ...+...+...++.||++++|+|+... ..+. ..
T Consensus 81 Gl~~ga~~--g~glg~~fL~~ir~ad~ll~Vvd~~~~~~~~~~~~~~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~~ 158 (396)
T PRK09602 81 GLVPGAHE--GRGLGNQFLDDLRQADALIHVVDASGSTDEEGNPVEPGSHDPVEDIKFLEEELDMWIYGILEKNWEKFSR 158 (396)
T ss_pred CcCCCccc--hhhHHHHHHHHHHHCCEEEEEEeCCCCcccCCcccCCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 98542211 112333455668999999999999621 0000 00
Q ss_pred -------------------------HHHHHhcc----------------------cCCCCCEEEEEeCCCCCChhH-HHH
Q 014942 215 -------------------------ILEEGVGD----------------------HKDKLPILLVLNKKDLIKPGE-IAK 246 (415)
Q Consensus 215 -------------------------~l~~~l~~----------------------~~~~~piilV~NK~Dl~~~~~-~~~ 246 (415)
.+.+.+.. +...+|+++|+||+|+..... +..
T Consensus 159 ~~~~~~~~~~~~~~~~l~~~~~~e~~v~~~L~~~g~~~~~~~~~~~~~~~I~~~~l~t~KPvI~VlNK~D~~~~~~~l~~ 238 (396)
T PRK09602 159 KAQAEKFDIEEALAEQLSGLGINEEHVKEALRELGLPEDPSKWTDEDLLELARELRKISKPMVIAANKADLPPAEENIER 238 (396)
T ss_pred HHhcCCcchHHHHHHHHhhhccCHHHHHHHHHHcCCcCcccCCCHHHHHHHHHhhhhcCCCEEEEEEchhcccchHHHHH
Confidence 01111110 113589999999999864322 222
Q ss_pred HHHHHhhcCCCccEEEcccCCCCCHHH-HHHHHHhhCCCCCCCCCCCCccccCCchhHHHHHHHHHHHHhhcC
Q 014942 247 KLEWYEKFTDVDEVIPVSAKYGHGVED-IRDWILTKLPLGPAYYPKFQDIVSEHPERFFVGEIIREKIFMQYR 318 (415)
Q Consensus 247 ~~~~~~~~~~~~~i~~vSA~~g~gv~e-L~~~L~~~l~~~~~~~~~~~~~~t~~~~~~~i~eiireki~~~~~ 318 (415)
+... ++..++++||+.+.|+.+ +++.+.+++|++|++||. +++++++.+ ++|++| ++|..+.
T Consensus 239 ----i~~~-~~~~vvpISA~~e~~l~~~l~~~i~~~lp~~p~~~~~--d~ltd~~~r--~~E~IR-k~l~~~g 301 (396)
T PRK09602 239 ----LKEE-KYYIVVPTSAEAELALRRAAKAGLIDYIPGDSDFEIL--GELSEKQKK--ALEYIR-EVLKKYG 301 (396)
T ss_pred ----HHhc-CCCcEEEEcchhhhhHHHHHHHhHHhhCCCCCccCcc--ccCCHHHHH--HHHHHH-HHHHHhC
Confidence 2222 456799999999999999 899999999999999999 999999988 899999 8877665
No 145
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.81 E-value=6.1e-19 Score=159.89 Aligned_cols=157 Identities=20% Similarity=0.236 Sum_probs=103.4
Q ss_pred cEEEEEecCCCCHHHHHHHHhCC--ceeee-------------eCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhh
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQ--KLSIV-------------TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHM 180 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~--~~~~~-------------~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~ 180 (415)
.+|+++|++|||||||+++|++. .+... ....++|.......+...+..+.+|||||. ..+.
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~--~~~~- 79 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGH--ADFG- 79 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCc--HHHH-
Confidence 37999999999999999999862 22110 012344544444456667889999999995 3322
Q ss_pred HhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChhH---HHHHHHHHhhc---
Q 014942 181 LDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE---IAKKLEWYEKF--- 254 (415)
Q Consensus 181 l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~---~~~~~~~~~~~--- 254 (415)
..+..+++.+|++++|+|++++......++...... .+.|+++|+||+|+..... ..+..+.+...
T Consensus 80 ------~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 151 (194)
T cd01891 80 ------GEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALE--LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGAT 151 (194)
T ss_pred ------HHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHH--cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCc
Confidence 234556889999999999988664544444444433 5789999999999964321 22223333211
Q ss_pred --CCCccEEEcccCCCCCH----------HHHHHHHHhhCC
Q 014942 255 --TDVDEVIPVSAKYGHGV----------EDIRDWILTKLP 283 (415)
Q Consensus 255 --~~~~~i~~vSA~~g~gv----------~eL~~~L~~~l~ 283 (415)
....+++++||++|.|+ .+|++.|.+.+|
T Consensus 152 ~~~~~~~iv~~Sa~~g~~~~~~~~~~~~~~~l~~~~~~~~~ 192 (194)
T cd01891 152 EEQLDFPVLYASAKNGWASLNLEDPSEDLEPLFDTIIEHVP 192 (194)
T ss_pred cccCccCEEEeehhccccccccccchhhHHHHHHHHHhcCC
Confidence 11248999999999765 445555555554
No 146
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.81 E-value=2.4e-19 Score=159.41 Aligned_cols=152 Identities=19% Similarity=0.220 Sum_probs=102.1
Q ss_pred EEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEE--EeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhc
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~--~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (415)
+|+++|.+|+|||||++++.+..+. ..+++|+.+..... +......+.+|||||. ..+..+ ...+++
T Consensus 2 k~~i~G~~~~GKtsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~-------~~~~~~ 70 (173)
T cd04130 2 KCVLVGDGAVGKTSLIVSYTTNGYP--TEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQ--DEFDKL-------RPLCYP 70 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC--CCCCCceeeeeeEEEEECCEEEEEEEEECCCC--hhhccc-------cccccC
Confidence 7999999999999999999887653 34455554433222 3333467889999994 333333 233578
Q ss_pred ccceEEEEecCCCCC--chHHHHHHHHhcccCCCCCEEEEEeCCCCCChhH------------H-HHHHHHHhhcCCCcc
Q 014942 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE------------I-AKKLEWYEKFTDVDE 259 (415)
Q Consensus 195 ~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~------------~-~~~~~~~~~~~~~~~ 259 (415)
.+|++|+|+|.+++. ......+...+.....+.|+++|+||+|+..... + .+....+....+..+
T Consensus 71 ~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~ 150 (173)
T cd04130 71 DTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACE 150 (173)
T ss_pred CCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCe
Confidence 999999999998754 3333323333333235789999999999864321 1 111222333334458
Q ss_pred EEEcccCCCCCHHHHHHHHH
Q 014942 260 VIPVSAKYGHGVEDIRDWIL 279 (415)
Q Consensus 260 i~~vSA~~g~gv~eL~~~L~ 279 (415)
++++||++|.|++++++.+.
T Consensus 151 ~~e~Sa~~~~~v~~lf~~~~ 170 (173)
T cd04130 151 YIECSALTQKNLKEVFDTAI 170 (173)
T ss_pred EEEEeCCCCCCHHHHHHHHH
Confidence 99999999999999998875
No 147
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.81 E-value=5.8e-19 Score=152.35 Aligned_cols=159 Identities=33% Similarity=0.375 Sum_probs=115.0
Q ss_pred EEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCC-CeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhcccce
Q 014942 120 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP-EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADC 198 (415)
Q Consensus 120 ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~-~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD~ 198 (415)
++|++|+|||||+|+|++......+..+++|........... ...+.+|||||+... ..........+..++..+|+
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~--~~~~~~~~~~~~~~~~~~d~ 78 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEA--GGLGREREELARRVLERADL 78 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCcc--ccchhhHHHHHHHHHHhCCE
Confidence 589999999999999999877656677777766665555443 678999999997432 22222222345566789999
Q ss_pred EEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHHHH---HHHhhcCCCccEEEcccCCCCCHHHHH
Q 014942 199 IVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKL---EWYEKFTDVDEVIPVSAKYGHGVEDIR 275 (415)
Q Consensus 199 ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~~~---~~~~~~~~~~~i~~vSA~~g~gv~eL~ 275 (415)
+++|+|++.........+...... .+.|+++|+||+|+.......... ..........+++++||+++.|+.+++
T Consensus 79 il~v~~~~~~~~~~~~~~~~~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l~ 156 (163)
T cd00880 79 ILFVVDADLRADEEEEKLLELLRE--RGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDELR 156 (163)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHh--cCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHHH
Confidence 999999998765544433333333 689999999999998765544332 222333455689999999999999999
Q ss_pred HHHHhhC
Q 014942 276 DWILTKL 282 (415)
Q Consensus 276 ~~L~~~l 282 (415)
++|.+.+
T Consensus 157 ~~l~~~~ 163 (163)
T cd00880 157 EALIEAL 163 (163)
T ss_pred HHHHhhC
Confidence 9998753
No 148
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.81 E-value=4.4e-19 Score=155.26 Aligned_cols=153 Identities=20% Similarity=0.193 Sum_probs=103.3
Q ss_pred EEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEE--EeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhc
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~--~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (415)
+|+++|.+|||||||++++++..+. ....+++.+..... .......+.+|||||. ..+.. ....+++
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~--~~~~~-------~~~~~~~ 70 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDEFV--EDYEPTKADSYRKKVVLDGEDVQLNILDTAGQ--EDYAA-------IRDNYHR 70 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCc--cccCCcchhhEEEEEEECCEEEEEEEEECCCh--hhhhH-------HHHHHhh
Confidence 7999999999999999999987764 33344433322222 3334567999999994 33332 2344578
Q ss_pred ccceEEEEecCCCCC--chHHHHHHHHhccc-CCCCCEEEEEeCCCCCChh--HHHHHHHHHhhcCCCccEEEcccCCCC
Q 014942 195 NADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPG--EIAKKLEWYEKFTDVDEVIPVSAKYGH 269 (415)
Q Consensus 195 ~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~-~~~~piilV~NK~Dl~~~~--~~~~~~~~~~~~~~~~~i~~vSA~~g~ 269 (415)
.+|++++|+|.+++. .....++....+.. ..+.|+++|+||+|+.... ........... .+ .+++++||++|.
T Consensus 71 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~-~~-~~~~~~Sa~~~~ 148 (164)
T cd04139 71 SGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQ-WG-VPYVETSAKTRQ 148 (164)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHH-hC-CeEEEeeCCCCC
Confidence 999999999987643 23344444443321 2579999999999997521 12222222222 22 489999999999
Q ss_pred CHHHHHHHHHhhC
Q 014942 270 GVEDIRDWILTKL 282 (415)
Q Consensus 270 gv~eL~~~L~~~l 282 (415)
|+++++++|.+.+
T Consensus 149 gi~~l~~~l~~~~ 161 (164)
T cd04139 149 NVEKAFYDLVREI 161 (164)
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998765
No 149
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.81 E-value=6.4e-19 Score=161.01 Aligned_cols=160 Identities=23% Similarity=0.316 Sum_probs=101.5
Q ss_pred EEEEEecCCCCHHHHHHHHhCCce--eeeeCCCCceEEeEEEE---------------------------EeCCC-----
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQKL--SIVTNKPQTTRHRILGI---------------------------CSGPE----- 162 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~~~--~~~~~~~~tt~~~~~~~---------------------------~~~~~----- 162 (415)
.|+++|+.|+|||||+.+|.+... .......+.|....... +...+
T Consensus 2 ~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (203)
T cd01888 2 NIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETKL 81 (203)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCcccc
Confidence 689999999999999999976521 00000011110000000 00012
Q ss_pred -eeEEEEeCCCCchhhhhhHhHHHHHHHHhhhcccceEEEEecCCCC-CchHHHHHHHHhcccCCCCCEEEEEeCCCCCC
Q 014942 163 -YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKA-PERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (415)
Q Consensus 163 -~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~-~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~ 240 (415)
.++.||||||. .. +...+..++..+|++++|+|++++ ........+..+... ...|+++|+||+|+..
T Consensus 82 ~~~i~~iDtPG~--~~-------~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~-~~~~iiivvNK~Dl~~ 151 (203)
T cd01888 82 VRHVSFVDCPGH--EI-------LMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM-GLKHIIIVQNKIDLVK 151 (203)
T ss_pred ccEEEEEECCCh--HH-------HHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc-CCCcEEEEEEchhccC
Confidence 68999999994 22 445566777899999999999874 222222233333321 2357999999999986
Q ss_pred hhHHHHHHHHHhhc-----CCCccEEEcccCCCCCHHHHHHHHHhhCCCCC
Q 014942 241 PGEIAKKLEWYEKF-----TDVDEVIPVSAKYGHGVEDIRDWILTKLPLGP 286 (415)
Q Consensus 241 ~~~~~~~~~~~~~~-----~~~~~i~~vSA~~g~gv~eL~~~L~~~l~~~~ 286 (415)
........+.+... ....+++++||++|.|+++|+++|.+.++++|
T Consensus 152 ~~~~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~~~ 202 (203)
T cd01888 152 EEQALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPTPP 202 (203)
T ss_pred HHHHHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCCCC
Confidence 54433322222221 12357999999999999999999999998754
No 150
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.81 E-value=5.2e-19 Score=163.31 Aligned_cols=156 Identities=13% Similarity=0.113 Sum_probs=105.4
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEE--EEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhh
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRIL--GICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~--~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~ 193 (415)
.+|+|+|.+|||||||+++|.+..+. ..+.+|...... ..+......+.+|||+| ++.+..+. ..++
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~--~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G--~e~~~~l~-------~~~~ 70 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYP--GSYVPTVFENYTASFEIDKRRIELNMWDTSG--SSYYDNVR-------PLAY 70 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC--CccCCccccceEEEEEECCEEEEEEEEeCCC--cHHHHHHh-------HHhc
Confidence 48999999999999999999987764 223333322222 22334456789999999 44444443 3348
Q ss_pred cccceEEEEecCCCCC--chHHHHHHHHhcccCCCCCEEEEEeCCCCCChhH------------H-HHHHHHHhhcCCCc
Q 014942 194 INADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE------------I-AKKLEWYEKFTDVD 258 (415)
Q Consensus 194 ~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~------------~-~~~~~~~~~~~~~~ 258 (415)
..+|++|+|+|.+++. ......+...++....+.|++||+||+|+..... + .+....+....+..
T Consensus 71 ~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~ 150 (222)
T cd04173 71 PDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAV 150 (222)
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCC
Confidence 9999999999998764 3332333333343346799999999999964211 1 11223333444545
Q ss_pred cEEEcccCCCCC-HHHHHHHHHhhC
Q 014942 259 EVIPVSAKYGHG-VEDIRDWILTKL 282 (415)
Q Consensus 259 ~i~~vSA~~g~g-v~eL~~~L~~~l 282 (415)
++++|||+++.| |+++|+......
T Consensus 151 ~y~E~SAk~~~~~V~~~F~~~~~~~ 175 (222)
T cd04173 151 SYVECSSRSSERSVRDVFHVATVAS 175 (222)
T ss_pred EEEEcCCCcCCcCHHHHHHHHHHHH
Confidence 899999999985 999999888754
No 151
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.81 E-value=5.8e-19 Score=156.16 Aligned_cols=151 Identities=23% Similarity=0.266 Sum_probs=102.8
Q ss_pred EEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhccc
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~a 196 (415)
.|+++|.+|||||||+++|.+.......+..+.+ ...+...+..+.+|||||. ..+. ..+..+++.|
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~~~~~~t~g~~----~~~~~~~~~~~~i~D~~G~--~~~~-------~~~~~~~~~a 67 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFT----PTKLRLDKYEVCIFDLGGG--ANFR-------GIWVNYYAEA 67 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCCccccCcccce----EEEEEECCEEEEEEECCCc--HHHH-------HHHHHHHcCC
Confidence 3899999999999999999987322222222322 2234456789999999994 3322 2355678999
Q ss_pred ceEEEEecCCCCC--chHHHHHHHHhccc-CCCCCEEEEEeCCCCCChhHHHHHHHHHh--h----cCCCccEEEcccCC
Q 014942 197 DCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYE--K----FTDVDEVIPVSAKY 267 (415)
Q Consensus 197 D~ii~VvD~~~~~--~~~~~~l~~~l~~~-~~~~piilV~NK~Dl~~~~~~~~~~~~~~--~----~~~~~~i~~vSA~~ 267 (415)
|++|+|+|+++.. .....++..++... ..+.|+++|+||+|+.......+..+.+. . ......+++|||++
T Consensus 68 ~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~ 147 (167)
T cd04161 68 HGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIE 147 (167)
T ss_pred CEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEcee
Confidence 9999999998753 33444555544331 14789999999999976543333332211 1 11234688899999
Q ss_pred C------CCHHHHHHHHHh
Q 014942 268 G------HGVEDIRDWILT 280 (415)
Q Consensus 268 g------~gv~eL~~~L~~ 280 (415)
| .|+.+.++||.+
T Consensus 148 g~~~~~~~g~~~~~~wl~~ 166 (167)
T cd04161 148 GLGKKIDPSIVEGLRWLLA 166 (167)
T ss_pred CCCCccccCHHHHHHHHhc
Confidence 8 899999999975
No 152
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.81 E-value=3.7e-19 Score=163.52 Aligned_cols=157 Identities=22% Similarity=0.288 Sum_probs=106.3
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEe---CCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhh
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS---GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~---~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~ 192 (415)
.+|+++|.+|||||||+++|++..+.... .+..+.+.....+. .....+.+|||||. ..+.. ....+
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~~-~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~--~~~~~-------~~~~~ 72 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAEVS-DPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQ--ERFRS-------ITRSY 72 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCC-CceeceEEEEEEEEECCCCEEEEEEEeCCcc--hhHHH-------HHHHH
Confidence 58999999999999999999988765322 22222232222222 23468999999994 33332 23455
Q ss_pred hcccceEEEEecCCCCC--chHHHHHHHHhcccC-CCCCEEEEEeCCCCCChhHH-HHHHHHHhhcCCCccEEEcccCCC
Q 014942 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHK-DKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYG 268 (415)
Q Consensus 193 ~~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~-~~~piilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g 268 (415)
++.+|++|+|+|.+++. .....|+........ ...|+++|+||+|+.....+ ......+.+..+ .+++++||++|
T Consensus 73 ~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~-~~~~e~Sak~g 151 (211)
T cd04111 73 YRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLG-MKYIETSARTG 151 (211)
T ss_pred hcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhC-CEEEEEeCCCC
Confidence 88999999999998753 344445544433321 45778999999999753322 222233333334 58999999999
Q ss_pred CCHHHHHHHHHhhCC
Q 014942 269 HGVEDIRDWILTKLP 283 (415)
Q Consensus 269 ~gv~eL~~~L~~~l~ 283 (415)
.|+++++++|.+.+.
T Consensus 152 ~~v~e~f~~l~~~~~ 166 (211)
T cd04111 152 DNVEEAFELLTQEIY 166 (211)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999998664
No 153
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.81 E-value=5e-19 Score=155.26 Aligned_cols=146 Identities=16% Similarity=0.155 Sum_probs=98.7
Q ss_pred EEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhccc
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~a 196 (415)
+|+++|++|||||||+|+|.+.... . .+|... .+... .+|||||..... ..+......++..+
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~--~---~~~~~v---~~~~~----~~iDtpG~~~~~-----~~~~~~~~~~~~~a 65 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTL--A---RKTQAV---EFNDK----GDIDTPGEYFSH-----PRWYHALITTLQDV 65 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcc--C---ccceEE---EECCC----CcccCCccccCC-----HHHHHHHHHHHhcC
Confidence 7999999999999999999876421 1 112111 11111 269999963211 11223334557899
Q ss_pred ceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHHHHHHHhhcCCCccEEEcccCCCCCHHHHHH
Q 014942 197 DCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRD 276 (415)
Q Consensus 197 D~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gv~eL~~ 276 (415)
|++++|+|++.+......++.... .++|+++++||+|+.+. ......+.+.......|++++||++|.|+++|++
T Consensus 66 d~il~v~d~~~~~s~~~~~~~~~~----~~~~ii~v~nK~Dl~~~-~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~ 140 (158)
T PRK15467 66 DMLIYVHGANDPESRLPAGLLDIG----VSKRQIAVISKTDMPDA-DVAATRKLLLETGFEEPIFELNSHDPQSVQQLVD 140 (158)
T ss_pred CEEEEEEeCCCcccccCHHHHhcc----CCCCeEEEEEccccCcc-cHHHHHHHHHHcCCCCCEEEEECCCccCHHHHHH
Confidence 999999999876544444444321 46799999999998653 2333344444433335899999999999999999
Q ss_pred HHHhhCCC
Q 014942 277 WILTKLPL 284 (415)
Q Consensus 277 ~L~~~l~~ 284 (415)
+|.+.+..
T Consensus 141 ~l~~~~~~ 148 (158)
T PRK15467 141 YLASLTKQ 148 (158)
T ss_pred HHHHhchh
Confidence 99988754
No 154
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.81 E-value=9.3e-19 Score=155.17 Aligned_cols=154 Identities=21% Similarity=0.338 Sum_probs=103.6
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~ 193 (415)
+..+|+++|++|||||||+++|.+..+.......+.+. ..+...+..+.+|||||. ..+ ...+..++
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~----~~i~~~~~~~~~~D~~G~--~~~-------~~~~~~~~ 79 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASEDISHITPTQGFNI----KTVQSDGFKLNVWDIGGQ--RAI-------RPYWRNYF 79 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcce----EEEEECCEEEEEEECCCC--HHH-------HHHHHHHh
Confidence 46789999999999999999999976543333333222 223345678999999994 222 22344557
Q ss_pred cccceEEEEecCCCCC--chHHHHHHHHhccc-CCCCCEEEEEeCCCCCChhHHHHHHHHHhhc---CCCccEEEcccCC
Q 014942 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEKF---TDVDEVIPVSAKY 267 (415)
Q Consensus 194 ~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~-~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~---~~~~~i~~vSA~~ 267 (415)
+.+|++++|+|+++.. .....++...+... ..+.|+++++||+|+..........+.+... ....+++++||++
T Consensus 80 ~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~~ 159 (173)
T cd04155 80 ENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALNLHDLRDRTWHIQACSAKT 159 (173)
T ss_pred cCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHcCCcccCCCeEEEEEeECCC
Confidence 8999999999998642 22233343333321 2468999999999997644333333333211 1123578999999
Q ss_pred CCCHHHHHHHHHh
Q 014942 268 GHGVEDIRDWILT 280 (415)
Q Consensus 268 g~gv~eL~~~L~~ 280 (415)
|.|++++++||++
T Consensus 160 ~~gi~~~~~~l~~ 172 (173)
T cd04155 160 GEGLQEGMNWVCK 172 (173)
T ss_pred CCCHHHHHHHHhc
Confidence 9999999999975
No 155
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.81 E-value=7e-19 Score=183.93 Aligned_cols=201 Identities=24% Similarity=0.268 Sum_probs=129.6
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCceee--------eeC------CCCceEEeEEEEEe-----CCCeeEEEEeCCCCchh
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQKLSI--------VTN------KPQTTRHRILGICS-----GPEYQMILYDTPGIIEK 176 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~~~~--------~~~------~~~tt~~~~~~~~~-----~~~~~l~liDtpG~~~~ 176 (415)
.+++|+|++++|||||+++|+.....+ +.+ ..+.|.......+. ...+.+.||||||+.
T Consensus 4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~-- 81 (595)
T TIGR01393 4 RNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHV-- 81 (595)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcH--
Confidence 479999999999999999998643211 111 12444433222222 234789999999963
Q ss_pred hhhhHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHHHHHHHhhcCC
Q 014942 177 KIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTD 256 (415)
Q Consensus 177 ~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~ 256 (415)
.+ ...+..++..||++|+|+|++++........+..... .+.|+++|+||+|+..... ....+.+....+
T Consensus 82 dF-------~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~--~~ipiIiViNKiDl~~~~~-~~~~~el~~~lg 151 (595)
T TIGR01393 82 DF-------SYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE--NDLEIIPVINKIDLPSADP-ERVKKEIEEVIG 151 (595)
T ss_pred HH-------HHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH--cCCCEEEEEECcCCCccCH-HHHHHHHHHHhC
Confidence 32 2334556889999999999998775544333222223 5789999999999864321 112222222222
Q ss_pred C--ccEEEcccCCCCCHHHHHHHHHhhCCCCCCCCCCCCccccCCchhHHHHHHHHHHHHhhcCCCCCceEEEEEEEEEe
Q 014942 257 V--DEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKFQDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKT 334 (415)
Q Consensus 257 ~--~~i~~vSA~~g~gv~eL~~~L~~~l~~~~~~~~~~~~~~t~~~~~~~i~eiireki~~~~~~eipys~~v~i~~~~~ 334 (415)
. .+++++||++|.|+++|+++|.+.+|... ..+ +.|.+.++-. ..+.+.+|..+.+++.+|+.
T Consensus 152 ~~~~~vi~vSAktG~GI~~Lle~I~~~lp~p~-~~~-------~~pl~~~V~~-------~~~d~~~G~v~~~rV~sG~l 216 (595)
T TIGR01393 152 LDASEAILASAKTGIGIEEILEAIVKRVPPPK-GDP-------DAPLKALIFD-------SHYDNYRGVVALVRVFEGTI 216 (595)
T ss_pred CCcceEEEeeccCCCCHHHHHHHHHHhCCCCC-CCC-------CCCeEEEEEE-------EEEeCCCcEEEEEEEECCEE
Confidence 2 35899999999999999999999987532 111 2232221111 12367888899999999998
Q ss_pred cCCCeeEEE
Q 014942 335 RPTAKDFIQ 343 (415)
Q Consensus 335 ~~~~~~~i~ 343 (415)
+.+..+.+.
T Consensus 217 k~Gd~v~~~ 225 (595)
T TIGR01393 217 KPGDKIRFM 225 (595)
T ss_pred ecCCEEEEe
Confidence 877655443
No 156
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.81 E-value=3.8e-19 Score=163.10 Aligned_cols=157 Identities=23% Similarity=0.203 Sum_probs=106.9
Q ss_pred EEEEEecCCCCHHHHHHHHhCCceeeee------------------------------CCCCceEEeEEEEEeCCCeeEE
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQKLSIVT------------------------------NKPQTTRHRILGICSGPEYQMI 166 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~~~~~~~------------------------------~~~~tt~~~~~~~~~~~~~~l~ 166 (415)
+|+|+|++|+|||||+++|+.....+.+ ...++|++.....+...+.++.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 5899999999999999999764432221 1267788877777778888999
Q ss_pred EEeCCCCchhhhhhHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCC-CCEEEEEeCCCCCChh--H
Q 014942 167 LYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDK-LPILLVLNKKDLIKPG--E 243 (415)
Q Consensus 167 liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~-~piilV~NK~Dl~~~~--~ 243 (415)
+|||||+ .. +...+..++..+|++|+|+|++.+..........++.. .+ .++|+|+||+|+.... .
T Consensus 81 liDTpG~--~~-------~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~--~~~~~iIvviNK~D~~~~~~~~ 149 (208)
T cd04166 81 IADTPGH--EQ-------YTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSL--LGIRHVVVAVNKMDLVDYSEEV 149 (208)
T ss_pred EEECCcH--HH-------HHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHH--cCCCcEEEEEEchhcccCCHHH
Confidence 9999995 22 22234455789999999999998775555444444443 33 4578899999997421 1
Q ss_pred HHHHH---HHHhhcCC--CccEEEcccCCCCCHHHHHHHHHhhCCCCCCCCCC
Q 014942 244 IAKKL---EWYEKFTD--VDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPK 291 (415)
Q Consensus 244 ~~~~~---~~~~~~~~--~~~i~~vSA~~g~gv~eL~~~L~~~l~~~~~~~~~ 291 (415)
..... ..+....+ ..+++++||++|.|+.+. .+..+|++++
T Consensus 150 ~~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~-------~~~~~w~~g~ 195 (208)
T cd04166 150 FEEIVADYLAFAAKLGIEDITFIPISALDGDNVVSR-------SENMPWYSGP 195 (208)
T ss_pred HHHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCccC-------CCCCCCCCCC
Confidence 11111 22222222 246899999999999854 3456777654
No 157
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.81 E-value=2.6e-19 Score=157.67 Aligned_cols=155 Identities=19% Similarity=0.222 Sum_probs=99.3
Q ss_pred EEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEE--eEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhc
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRH--RILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~--~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (415)
+|+++|.+|||||||++++++..+. ..++.++.. .....+......+.+|||||....... ....+++
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~~~ 70 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFI--GEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTE--------QLERSIR 70 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccc--cccCCChHHhceEEEEECCEEEEEEEEECCCCcccccc--------hHHHHHH
Confidence 5899999999999999999986653 233333321 122223444457889999995311111 1233467
Q ss_pred ccceEEEEecCCCCC--chHHHHHHHHhcc--cCCCCCEEEEEeCCCCCChhHHH-HHHHHHhhcCCCccEEEcccCCC-
Q 014942 195 NADCIVVLVDACKAP--ERIDEILEEGVGD--HKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYG- 268 (415)
Q Consensus 195 ~aD~ii~VvD~~~~~--~~~~~~l~~~l~~--~~~~~piilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~i~~vSA~~g- 268 (415)
.+|++|+|+|++++. .....|+..+... ...+.|+++|+||+|+.....+. .....+....+ .+++++||++|
T Consensus 71 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~e~Sa~~~~ 149 (165)
T cd04146 71 WADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELG-CLFFEVSAAEDY 149 (165)
T ss_pred hCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcC-CEEEEeCCCCCc
Confidence 899999999998753 2223332222211 12579999999999986433221 11222222223 47999999999
Q ss_pred CCHHHHHHHHHhhC
Q 014942 269 HGVEDIRDWILTKL 282 (415)
Q Consensus 269 ~gv~eL~~~L~~~l 282 (415)
.|++++|..|++.+
T Consensus 150 ~~v~~~f~~l~~~~ 163 (165)
T cd04146 150 DGVHSVFHELCREV 163 (165)
T ss_pred hhHHHHHHHHHHHH
Confidence 49999999998765
No 158
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.80 E-value=1.6e-18 Score=157.02 Aligned_cols=145 Identities=19% Similarity=0.172 Sum_probs=104.5
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCcee---------------eeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhh
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQKLS---------------IVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHM 180 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~~~---------------~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~ 180 (415)
..|+++|++++|||||+++|++.... ......++|.+.....+...+.++.|+||||+.
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~------ 76 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHA------ 76 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHH------
Confidence 47999999999999999999854100 011245667776666677788899999999952
Q ss_pred HhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCC-EEEEEeCCCCCChhHHHH-----HHHHHhhc
Q 014942 181 LDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKDLIKPGEIAK-----KLEWYEKF 254 (415)
Q Consensus 181 l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~p-iilV~NK~Dl~~~~~~~~-----~~~~~~~~ 254 (415)
.+...+...+..+|++++|+|+..+....+..++..+.. .+.| +|+|+||+|+.......+ ....+...
T Consensus 77 ---~~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~--~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~ 151 (195)
T cd01884 77 ---DYIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQ--VGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKY 151 (195)
T ss_pred ---HHHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHH--cCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHh
Confidence 144556677889999999999998887777777777766 5676 789999999974332221 22222221
Q ss_pred C---CCccEEEcccCCCCCH
Q 014942 255 T---DVDEVIPVSAKYGHGV 271 (415)
Q Consensus 255 ~---~~~~i~~vSA~~g~gv 271 (415)
. ...+++++||++|.|+
T Consensus 152 g~~~~~v~iipiSa~~g~n~ 171 (195)
T cd01884 152 GFDGDNTPIVRGSALKALEG 171 (195)
T ss_pred cccccCCeEEEeeCccccCC
Confidence 1 2368999999999984
No 159
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.80 E-value=6.1e-19 Score=155.60 Aligned_cols=149 Identities=15% Similarity=0.157 Sum_probs=101.7
Q ss_pred EEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhcccc
Q 014942 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINAD 197 (415)
Q Consensus 118 V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD 197 (415)
|+++|.+|||||||+++|.+..+. ..+..|.... ...+...+..+.+|||||. ..+.. .+..+++.+|
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~--~~~~pt~g~~-~~~i~~~~~~l~i~Dt~G~--~~~~~-------~~~~~~~~ad 69 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSL--ESVVPTTGFN-SVAIPTQDAIMELLEIGGS--QNLRK-------YWKRYLSGSQ 69 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCc--ccccccCCcc-eEEEeeCCeEEEEEECCCC--cchhH-------HHHHHHhhCC
Confidence 799999999999999999987653 2222222111 2234566789999999994 33332 2445688999
Q ss_pred eEEEEecCCCCC--chHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHHHHHH-----HhhcCCCccEEEcccCC---
Q 014942 198 CIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEW-----YEKFTDVDEVIPVSAKY--- 267 (415)
Q Consensus 198 ~ii~VvD~~~~~--~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~~~~~-----~~~~~~~~~i~~vSA~~--- 267 (415)
++|+|+|++++. .....++.+++... .++|+++|+||+|+.....+..+... +... ...+++++||++
T Consensus 70 ~ii~V~D~t~~~s~~~~~~~l~~~~~~~-~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~Sa~~~~s 147 (164)
T cd04162 70 GLIFVVDSADSERLPLARQELHQLLQHP-PDLPLVVLANKQDLPAARSVQEIHKELELEPIARG-RRWILQGTSLDDDGS 147 (164)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHhCC-CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCC-CceEEEEeeecCCCC
Confidence 999999998754 33344555554332 67999999999999765444332221 2121 234678888888
Q ss_pred ---CCCHHHHHHHHHh
Q 014942 268 ---GHGVEDIRDWILT 280 (415)
Q Consensus 268 ---g~gv~eL~~~L~~ 280 (415)
++||+++|+.|..
T Consensus 148 ~~~~~~v~~~~~~~~~ 163 (164)
T cd04162 148 PSRMEAVKDLLSQLIN 163 (164)
T ss_pred hhHHHHHHHHHHHHhc
Confidence 9999999998864
No 160
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.80 E-value=1.6e-18 Score=154.69 Aligned_cols=156 Identities=26% Similarity=0.338 Sum_probs=111.8
Q ss_pred CCccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhh
Q 014942 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (415)
Q Consensus 113 ~~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~ 192 (415)
.+..+|+++|..|+||||++++|.......+.++.+ .....+...+..+.+||.+| +..+.. .+..+
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~~~pT~g----~~~~~i~~~~~~~~~~d~gG--~~~~~~-------~w~~y 78 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEISETIPTIG----FNIEEIKYKGYSLTIWDLGG--QESFRP-------LWKSY 78 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEEEEEEESS----EEEEEEEETTEEEEEEEESS--SGGGGG-------GGGGG
T ss_pred CcEEEEEEECCCccchHHHHHHhhhccccccCcccc----cccceeeeCcEEEEEEeccc--cccccc-------cceee
Confidence 366799999999999999999999876543322222 22334556788999999999 433333 35667
Q ss_pred hcccceEEEEecCCCCC--chHHHHHHHHhccc-CCCCCEEEEEeCCCCCChhHHHHHHHHHh--hc--CCCccEEEccc
Q 014942 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYE--KF--TDVDEVIPVSA 265 (415)
Q Consensus 193 ~~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~-~~~~piilV~NK~Dl~~~~~~~~~~~~~~--~~--~~~~~i~~vSA 265 (415)
+..+|++|||+|+++.. ......+.+++... ..+.|+++++||+|+.......+....+. .. .....++.|||
T Consensus 79 ~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~~v~~~sa 158 (175)
T PF00025_consen 79 FQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLKNKRPWSVFSCSA 158 (175)
T ss_dssp HTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTTSSSCEEEEEEBT
T ss_pred ccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhcccCCceEEEeeec
Confidence 89999999999998653 34444555555432 25799999999999976444343333322 11 23457899999
Q ss_pred CCCCCHHHHHHHHHhh
Q 014942 266 KYGHGVEDIRDWILTK 281 (415)
Q Consensus 266 ~~g~gv~eL~~~L~~~ 281 (415)
.+|.|+.+.++||.+.
T Consensus 159 ~~g~Gv~e~l~WL~~~ 174 (175)
T PF00025_consen 159 KTGEGVDEGLEWLIEQ 174 (175)
T ss_dssp TTTBTHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHHHhc
Confidence 9999999999999875
No 161
>PLN03108 Rab family protein; Provisional
Probab=99.80 E-value=9e-19 Score=160.88 Aligned_cols=157 Identities=20% Similarity=0.178 Sum_probs=104.2
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEE--EEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhh
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRIL--GICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~--~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~ 193 (415)
.+|+|+|++|||||||+++|++..+... ..+....+... ..+......+.+|||||. ..+.. ....++
T Consensus 7 ~kivivG~~gvGKStLi~~l~~~~~~~~-~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~--~~~~~-------~~~~~~ 76 (210)
T PLN03108 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPV-HDLTIGVEFGARMITIDNKPIKLQIWDTAGQ--ESFRS-------ITRSYY 76 (210)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCC-CCCCccceEEEEEEEECCEEEEEEEEeCCCc--HHHHH-------HHHHHh
Confidence 5899999999999999999998876532 12222222222 223333457889999994 33332 234557
Q ss_pred cccceEEEEecCCCCC--chHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHH-HHHHHHhhcCCCccEEEcccCCCCC
Q 014942 194 INADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYGHG 270 (415)
Q Consensus 194 ~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~i~~vSA~~g~g 270 (415)
..+|++|+|+|+++.. .....|+.........+.|+++|+||+|+.....+. .....+....+ .+++++||++|.|
T Consensus 77 ~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~e~Sa~~~~~ 155 (210)
T PLN03108 77 RGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHG-LIFMEASAKTAQN 155 (210)
T ss_pred ccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcC-CEEEEEeCCCCCC
Confidence 8999999999998654 333344444333323578999999999997533221 11222222223 4799999999999
Q ss_pred HHHHHHHHHhhCC
Q 014942 271 VEDIRDWILTKLP 283 (415)
Q Consensus 271 v~eL~~~L~~~l~ 283 (415)
++++|.++++.+.
T Consensus 156 v~e~f~~l~~~~~ 168 (210)
T PLN03108 156 VEEAFIKTAAKIY 168 (210)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987664
No 162
>PRK12739 elongation factor G; Reviewed
Probab=99.80 E-value=5.2e-19 Score=188.98 Aligned_cols=232 Identities=17% Similarity=0.141 Sum_probs=153.7
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCc-----eeeee------------CCCCceEEeEEEEEeCCCeeEEEEeCCCCchh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQK-----LSIVT------------NKPQTTRHRILGICSGPEYQMILYDTPGIIEK 176 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~-----~~~~~------------~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~ 176 (415)
+-.+|+|+|++|+|||||+++|+... ...+. ...++|.+.....+.+++.+++|+||||+..
T Consensus 7 ~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~- 85 (691)
T PRK12739 7 KTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVD- 85 (691)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHH-
Confidence 44589999999999999999997431 11111 2456677766667778899999999999632
Q ss_pred hhhhHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChh---HHHHHHHHHh-
Q 014942 177 KIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG---EIAKKLEWYE- 252 (415)
Q Consensus 177 ~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~---~~~~~~~~~~- 252 (415)
+...+..++..+|++|+|+|+..+....+..++..+.. .++|+|+++||+|+.... .+..+...+.
T Consensus 86 --------f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~--~~~p~iv~iNK~D~~~~~~~~~~~~i~~~l~~ 155 (691)
T PRK12739 86 --------FTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADK--YGVPRIVFVNKMDRIGADFFRSVEQIKDRLGA 155 (691)
T ss_pred --------HHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHH--cCCCEEEEEECCCCCCCCHHHHHHHHHHHhCC
Confidence 22346777899999999999999888887777777766 789999999999987421 1111111000
Q ss_pred --------------------------------------------------------------------------------
Q 014942 253 -------------------------------------------------------------------------------- 252 (415)
Q Consensus 253 -------------------------------------------------------------------------------- 252 (415)
T Consensus 156 ~~~~~~iPis~~~~f~g~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yl~~~~~~ 235 (691)
T PRK12739 156 NAVPIQLPIGAEDDFKGVIDLIKMKAIIWDDETLGAKYEEEDIPADLKEKAEEYREKLIEAVAEVDEELMEKYLEGEEIT 235 (691)
T ss_pred CceeEEecccccccceEEEEcchhhhhhccCCCCCCeeEEcCCCHHHHHHHHHHHHHHHHhhhhcCHHHHHHHhccCCCC
Confidence
Q ss_pred ------------hcCCCccEEEcccCCCCCHHHHHHHHHhhCCCCCCCCCCCC------c---cccCCchhHHHHHHHHH
Q 014942 253 ------------KFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKFQ------D---IVSEHPERFFVGEIIRE 311 (415)
Q Consensus 253 ------------~~~~~~~i~~vSA~~g~gv~eL~~~L~~~l~~~~~~~~~~~------~---~~t~~~~~~~i~eiire 311 (415)
....+.|++..||.++.|++.|++.|.+.+|... ..+... + .....|...+++.++
T Consensus 236 ~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~I~~~lPsP~-~~~~~~~~~~~~~~~~~~~~~~~~pl~a~Vf-- 312 (691)
T PRK12739 236 EEEIKAAIRKATINMEFFPVLCGSAFKNKGVQPLLDAVVDYLPSPL-DVPAIKGINPDTEEEIERPASDDEPFAALAF-- 312 (691)
T ss_pred HHHHHHHHHHHHHcCCEEEEEeccccCCccHHHHHHHHHHHCCChh-hccccccccCCCCcceeeccCCCCCeEEEEE--
Confidence 0112347888999999999999999999998632 111100 0 011122233333333
Q ss_pred HHHhhcCCCCCceEEEEEEEEEecCCCeeEEEEEEEEeeCCceeEEeecC
Q 014942 312 KIFMQYRNEVPYACQVNVVSYKTRPTAKDFIQVEIVVEKNSQKIILIGKG 361 (415)
Q Consensus 312 ki~~~~~~eipys~~v~i~~~~~~~~~~~~i~~~~~~~r~~q~~iiiG~~ 361 (415)
|++ ..+..+..+.+++.+|+.+++..+++......++.++.+++.|..
T Consensus 313 K~~--~d~~~G~i~~~RV~sGtL~~g~~v~~~~~~~~~~v~~l~~~~g~~ 360 (691)
T PRK12739 313 KIM--TDPFVGRLTFFRVYSGVLESGSYVLNTTKGKKERIGRLLQMHANK 360 (691)
T ss_pred Eee--eCCCCCeEEEEEEeeeEEcCCCEEEeCCCCceEEecceEEEecCC
Confidence 222 266788899999999999887655443322233444555555543
No 163
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.80 E-value=1.7e-18 Score=150.05 Aligned_cols=151 Identities=20% Similarity=0.291 Sum_probs=101.4
Q ss_pred EEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhcccc
Q 014942 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINAD 197 (415)
Q Consensus 118 V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD 197 (415)
|+++|++|||||||+|+|.+.++.. ...|..... .. ....++..+.+|||||. ..+. ..+..++..+|
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~-~~~~t~~~~-~~-~~~~~~~~~~~~D~~g~--~~~~-------~~~~~~~~~~d 69 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSE-DTIPTVGFN-MR-KVTKGNVTLKVWDLGGQ--PRFR-------SMWERYCRGVN 69 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCc-CccCCCCcc-eE-EEEECCEEEEEEECCCC--HhHH-------HHHHHHHhcCC
Confidence 8999999999999999999987642 222222222 11 23445578999999994 3322 23445578999
Q ss_pred eEEEEecCCCCC--chHHHHHHHHhccc-CCCCCEEEEEeCCCCCChhHHHHHHHHHhh---cCCCccEEEcccCCCCCH
Q 014942 198 CIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVSAKYGHGV 271 (415)
Q Consensus 198 ~ii~VvD~~~~~--~~~~~~l~~~l~~~-~~~~piilV~NK~Dl~~~~~~~~~~~~~~~---~~~~~~i~~vSA~~g~gv 271 (415)
++++|+|+++.. .....++...+... ..+.|+++|+||+|+............+.. .....+++++||++|.|+
T Consensus 70 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 149 (159)
T cd04159 70 AIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREVSCYSISCKEKTNI 149 (159)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCcccccCCceEEEEEEeccCCCh
Confidence 999999997643 22233444443321 157899999999998765433333333211 112347899999999999
Q ss_pred HHHHHHHHh
Q 014942 272 EDIRDWILT 280 (415)
Q Consensus 272 ~eL~~~L~~ 280 (415)
++++++|.+
T Consensus 150 ~~l~~~l~~ 158 (159)
T cd04159 150 DIVLDWLIK 158 (159)
T ss_pred HHHHHHHhh
Confidence 999999975
No 164
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.80 E-value=7.6e-19 Score=162.62 Aligned_cols=155 Identities=24% Similarity=0.274 Sum_probs=100.2
Q ss_pred EEEEEecCCCCHHHHHHHHhCCcee-eeeCCCCc-eEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhc
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQKLS-IVTNKPQT-TRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~~~~-~~~~~~~t-t~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (415)
+|+++|.+|||||||+++|++..+. .....++. ........+......+.+|||||.. ..+.. .++.
T Consensus 2 KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~----~~~~~-------~~~~ 70 (221)
T cd04148 2 RVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE----MWTED-------SCMQ 70 (221)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc----hHHHh-------HHhh
Confidence 7999999999999999999876653 11111111 1111222334456789999999952 11111 1244
Q ss_pred -ccceEEEEecCCCCC--chHHHHHHHHhccc-CCCCCEEEEEeCCCCCChhHHHH-HHHHHhhcCCCccEEEcccCCCC
Q 014942 195 -NADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAK-KLEWYEKFTDVDEVIPVSAKYGH 269 (415)
Q Consensus 195 -~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~-~~~~piilV~NK~Dl~~~~~~~~-~~~~~~~~~~~~~i~~vSA~~g~ 269 (415)
.+|++++|+|++++. .....++..+.... ..+.|+|+|+||+|+.....+.. ....+....+ .+++++||++|.
T Consensus 71 ~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~-~~~~e~SA~~~~ 149 (221)
T cd04148 71 YQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFD-CKFIETSAGLQH 149 (221)
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcC-CeEEEecCCCCC
Confidence 899999999998753 22333333332221 15789999999999975433221 1122222223 478999999999
Q ss_pred CHHHHHHHHHhhCC
Q 014942 270 GVEDIRDWILTKLP 283 (415)
Q Consensus 270 gv~eL~~~L~~~l~ 283 (415)
||++++++|++.+.
T Consensus 150 gv~~l~~~l~~~~~ 163 (221)
T cd04148 150 NVDELLEGIVRQIR 163 (221)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999998775
No 165
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=8.6e-19 Score=155.12 Aligned_cols=159 Identities=18% Similarity=0.154 Sum_probs=114.5
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCce-EEeE--EEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHH
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTT-RHRI--LGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt-~~~~--~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~ 190 (415)
+..+|+++|.+|||||+++.++....+. .....|- .+.. ...+......+.+|||+| ++.+..+ +.
T Consensus 11 ~~~kvlliGDs~vGKt~~l~rf~d~~f~--~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaG--Qerf~ti-------~~ 79 (207)
T KOG0078|consen 11 YLFKLLLIGDSGVGKTCLLLRFSDDSFN--TSFISTIGIDFKIKTIELDGKKIKLQIWDTAG--QERFRTI-------TT 79 (207)
T ss_pred eEEEEEEECCCCCchhHhhhhhhhccCc--CCccceEEEEEEEEEEEeCCeEEEEEEEEccc--chhHHHH-------HH
Confidence 4459999999999999999999988774 2222221 1221 222444556889999999 6665544 66
Q ss_pred hhhcccceEEEEecCCCCC--chHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHH-HHHHHHhhcCCCccEEEcccCC
Q 014942 191 SAGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKY 267 (415)
Q Consensus 191 ~~~~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~i~~vSA~~ 267 (415)
+|++.|+++++|+|.++.. +....|+..+-.....+.|++||+||+|+..++.+. +..+.+....+ .+++++||++
T Consensus 80 sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G-~~F~EtSAk~ 158 (207)
T KOG0078|consen 80 AYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYG-IKFFETSAKT 158 (207)
T ss_pred HHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhC-CeEEEccccC
Confidence 7799999999999998643 556665554444334589999999999998755443 22333444334 4899999999
Q ss_pred CCCHHHHHHHHHhhCCC
Q 014942 268 GHGVEDIRDWILTKLPL 284 (415)
Q Consensus 268 g~gv~eL~~~L~~~l~~ 284 (415)
|.||++.|-.|++.+..
T Consensus 159 ~~NI~eaF~~La~~i~~ 175 (207)
T KOG0078|consen 159 NFNIEEAFLSLARDILQ 175 (207)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999887753
No 166
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.79 E-value=7.6e-19 Score=178.14 Aligned_cols=200 Identities=19% Similarity=0.138 Sum_probs=127.3
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeee------------------------------eCCCCceEEeEEEEEeCCCe
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIV------------------------------TNKPQTTRHRILGICSGPEY 163 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~------------------------------~~~~~tt~~~~~~~~~~~~~ 163 (415)
...+|+++|++|+|||||+++|+.....+. ...+++|++.....+...+.
T Consensus 5 ~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~~ 84 (425)
T PRK12317 5 PHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDKY 84 (425)
T ss_pred CEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCCe
Confidence 345899999999999999999985432221 11578899988888888899
Q ss_pred eEEEEeCCCCchhhhhhHhHHHHHHHHhhhcccceEEEEecCCC--CCchHHHHHHHHhcccCCC-CCEEEEEeCCCCCC
Q 014942 164 QMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACK--APERIDEILEEGVGDHKDK-LPILLVLNKKDLIK 240 (415)
Q Consensus 164 ~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~--~~~~~~~~l~~~l~~~~~~-~piilV~NK~Dl~~ 240 (415)
.+.||||||+ ..+ ...+...+..+|++++|+|+++ +......+...++.. .+ .|+++|+||+|+..
T Consensus 85 ~i~liDtpG~--~~~-------~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~--~~~~~iivviNK~Dl~~ 153 (425)
T PRK12317 85 YFTIVDCPGH--RDF-------VKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLART--LGINQLIVAINKMDAVN 153 (425)
T ss_pred EEEEEECCCc--ccc-------hhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHH--cCCCeEEEEEEcccccc
Confidence 9999999995 222 2223344678999999999988 665555555544444 33 46999999999975
Q ss_pred h--hHHH----HHHHHHhhcC---CCccEEEcccCCCCCHHH------------HHHHHHhhCCCCCCCCCCCCccccCC
Q 014942 241 P--GEIA----KKLEWYEKFT---DVDEVIPVSAKYGHGVED------------IRDWILTKLPLGPAYYPKFQDIVSEH 299 (415)
Q Consensus 241 ~--~~~~----~~~~~~~~~~---~~~~i~~vSA~~g~gv~e------------L~~~L~~~l~~~~~~~~~~~~~~t~~ 299 (415)
. .... +....+.... ...+++++||++|.|+++ |++.|.. ++..+ ...+.
T Consensus 154 ~~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~~~~wy~g~~L~~~l~~-~~~~~--------~~~~~ 224 (425)
T PRK12317 154 YDEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKSENMPWYNGPTLLEALDN-LKPPE--------KPTDK 224 (425)
T ss_pred ccHHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccccCCCcccHHHHHHHHhc-CCCCc--------cccCC
Confidence 2 1111 1222222211 125799999999999986 5555533 33211 11234
Q ss_pred chhHHHHHHHHHHHHhhcCCCCCceEEEEEEEEEecCCCee
Q 014942 300 PERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTRPTAKD 340 (415)
Q Consensus 300 ~~~~~i~eiireki~~~~~~eipys~~v~i~~~~~~~~~~~ 340 (415)
|.++.+.++++ -+.+|......+..|..+.+..+
T Consensus 225 p~r~~i~~~~~-------~~g~G~vv~G~v~~G~v~~Gd~v 258 (425)
T PRK12317 225 PLRIPIQDVYS-------ISGVGTVPVGRVETGVLKVGDKV 258 (425)
T ss_pred CcEEEEEEEEe-------eCCCeEEEEEEEeeccEecCCEE
Confidence 54444433221 23455556667777766655433
No 167
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.79 E-value=1.8e-18 Score=185.03 Aligned_cols=163 Identities=26% Similarity=0.311 Sum_probs=120.7
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhh----hhHhHHHHHHH
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI----HMLDSMMMKNV 189 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~----~~l~~~~~~~~ 189 (415)
+..+|+++|+||||||||+|+|+|.+. .+++.+++|.+...+.+...+.++.+|||||+..-.. ..+++......
T Consensus 2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~-~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~ 80 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGARQ-RVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (772)
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHH
Confidence 456899999999999999999999876 4788999999998888888889999999999743211 12233222111
Q ss_pred HhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHHHHHHHhhcCCCccEEEcccCCCC
Q 014942 190 RSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGH 269 (415)
Q Consensus 190 ~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~ 269 (415)
-....+|++++|+|+++...... +...+.+ .+.|+++|+||+|+.+........+.+.+..+ .+++++||++|.
T Consensus 81 -l~~~~aD~vI~VvDat~ler~l~--l~~ql~e--~giPvIvVlNK~Dl~~~~~i~id~~~L~~~LG-~pVvpiSA~~g~ 154 (772)
T PRK09554 81 -ILSGDADLLINVVDASNLERNLY--LTLQLLE--LGIPCIVALNMLDIAEKQNIRIDIDALSARLG-CPVIPLVSTRGR 154 (772)
T ss_pred -HhccCCCEEEEEecCCcchhhHH--HHHHHHH--cCCCEEEEEEchhhhhccCcHHHHHHHHHHhC-CCEEEEEeecCC
Confidence 11358999999999987543322 2233344 57999999999998755444334444544444 489999999999
Q ss_pred CHHHHHHHHHhhCC
Q 014942 270 GVEDIRDWILTKLP 283 (415)
Q Consensus 270 gv~eL~~~L~~~l~ 283 (415)
|++++++.+.+..+
T Consensus 155 GIdeL~~~I~~~~~ 168 (772)
T PRK09554 155 GIEALKLAIDRHQA 168 (772)
T ss_pred CHHHHHHHHHHhhh
Confidence 99999999988764
No 168
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.79 E-value=2.1e-18 Score=151.26 Aligned_cols=148 Identities=13% Similarity=0.143 Sum_probs=98.1
Q ss_pred EEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCC--CeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhc
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~--~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (415)
+|+++|.+|||||||+.+++...+... .+.+.... ...+..+ ...+.+|||+|.. . ..+++
T Consensus 2 ki~vvG~~gvGKTsli~~~~~~~f~~~--~~~~~~~~-~~~i~~~~~~~~l~i~D~~g~~--~------------~~~~~ 64 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLTGSYVQL--ESPEGGRF-KKEVLVDGQSHLLLIRDEGGAP--D------------AQFAS 64 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCCCCC--CCCCccce-EEEEEECCEEEEEEEEECCCCC--c------------hhHHh
Confidence 799999999999999999987765421 22221111 1222333 3578999999952 1 12256
Q ss_pred ccceEEEEecCCCCC--chHHHHHHHHhccc-CCCCCEEEEEeCCCCCC--hhHHHH-HHHHHhhcCCCccEEEcccCCC
Q 014942 195 NADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIK--PGEIAK-KLEWYEKFTDVDEVIPVSAKYG 268 (415)
Q Consensus 195 ~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~-~~~~piilV~NK~Dl~~--~~~~~~-~~~~~~~~~~~~~i~~vSA~~g 268 (415)
.+|++++|+|.++.. +....|+..+.... ..+.|+++|+||+|+.. .+.+.. ....+.+.....++++|||++|
T Consensus 65 ~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~ 144 (158)
T cd04103 65 WVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYG 144 (158)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCC
Confidence 899999999998755 44444544443321 15689999999999842 222221 1223333333358999999999
Q ss_pred CCHHHHHHHHHhh
Q 014942 269 HGVEDIRDWILTK 281 (415)
Q Consensus 269 ~gv~eL~~~L~~~ 281 (415)
.||+++|..+++.
T Consensus 145 ~~i~~~f~~~~~~ 157 (158)
T cd04103 145 LNVERVFQEAAQK 157 (158)
T ss_pred CCHHHHHHHHHhh
Confidence 9999999999865
No 169
>PRK00007 elongation factor G; Reviewed
Probab=99.79 E-value=1.2e-18 Score=186.24 Aligned_cols=234 Identities=16% Similarity=0.119 Sum_probs=155.1
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCce---e--eee------------CCCCceEEeEEEEEeCCCeeEEEEeCCCCchh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKL---S--IVT------------NKPQTTRHRILGICSGPEYQMILYDTPGIIEK 176 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~---~--~~~------------~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~ 176 (415)
+-.+|+|+|++|+|||||+|+|+...- . .+. ...++|.+.....+.+.+.+++|+||||+.+
T Consensus 9 ~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~- 87 (693)
T PRK00007 9 RYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVD- 87 (693)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHH-
Confidence 345899999999999999999973211 1 112 2556777777777788899999999999632
Q ss_pred hhhhHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChhH---HHHHHHHHh-
Q 014942 177 KIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE---IAKKLEWYE- 252 (415)
Q Consensus 177 ~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~---~~~~~~~~~- 252 (415)
+...+..++..+|++|+|+|+..+....+..++..+.. .++|+++++||+|+..... +..+.+.+.
T Consensus 88 --------f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~--~~~p~iv~vNK~D~~~~~~~~~~~~i~~~l~~ 157 (693)
T PRK00007 88 --------FTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADK--YKVPRIAFVNKMDRTGADFYRVVEQIKDRLGA 157 (693)
T ss_pred --------HHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHH--cCCCEEEEEECCCCCCCCHHHHHHHHHHHhCC
Confidence 22235666889999999999999988888888887777 7899999999999864210 000000000
Q ss_pred --------------------------------------------------------------------------------
Q 014942 253 -------------------------------------------------------------------------------- 252 (415)
Q Consensus 253 -------------------------------------------------------------------------------- 252 (415)
T Consensus 158 ~~~~~~ipisa~~~f~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yle~~~l~ 237 (693)
T PRK00007 158 NPVPIQLPIGAEDDFKGVVDLVKMKAIIWNEADLGATFEYEEIPADLKDKAEEYREKLIEAAAEADEELMEKYLEGEELT 237 (693)
T ss_pred CeeeEEecCccCCcceEEEEcceeeeeecccCCCCCcceEccCCHHHHHHHHHHHHHHHHHHHccCHHHHHHHhCcCCCC
Confidence
Q ss_pred ------------hcCCCccEEEcccCCCCCHHHHHHHHHhhCCCCCCCCCCCCc----------cccCCchhHHHHHHHH
Q 014942 253 ------------KFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKFQD----------IVSEHPERFFVGEIIR 310 (415)
Q Consensus 253 ------------~~~~~~~i~~vSA~~g~gv~eL~~~L~~~l~~~~~~~~~~~~----------~~t~~~~~~~i~eiir 310 (415)
....+.|++..||.++.|+..|++.|.+.+|... ..+.... .....+...+++.++
T Consensus 238 ~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~I~~~lPsP~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~Vf- 315 (693)
T PRK00007 238 EEEIKAALRKATIANEIVPVLCGSAFKNKGVQPLLDAVVDYLPSPL-DVPAIKGILPDGEEEEVERKASDDEPFSALAF- 315 (693)
T ss_pred HHHHHHHHHHHHhcCcEEEEEecccccCcCHHHHHHHHHHHCCChh-hcccccccCCCccccceeecCCCCCCeEEEEE-
Confidence 0113457888899999999999999999998632 2211000 001112222333333
Q ss_pred HHHHhhcCCCCCceEEEEEEEEEecCCCeeEEEEEEEEeeCCceeEEeecCCh
Q 014942 311 EKIFMQYRNEVPYACQVNVVSYKTRPTAKDFIQVEIVVEKNSQKIILIGKGGK 363 (415)
Q Consensus 311 eki~~~~~~eipys~~v~i~~~~~~~~~~~~i~~~~~~~r~~q~~iiiG~~g~ 363 (415)
|+. ..+..+..+.++|.+|+.+++..+++......++.++.+.+.|....
T Consensus 316 -K~~--~d~~~G~ia~~RV~sGtl~~g~~v~~~~~~~~eki~~l~~~~g~~~~ 365 (693)
T PRK00007 316 -KIM--TDPFVGKLTFFRVYSGVLESGSYVLNSTKGKKERIGRILQMHANKRE 365 (693)
T ss_pred -Eee--ecCCCCcEEEEEEeeeEEcCCCEEEeCCCCceeEeceeEEeccCCcc
Confidence 222 26778999999999999988876654332223444555555555443
No 170
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=1.1e-18 Score=150.38 Aligned_cols=157 Identities=20% Similarity=0.244 Sum_probs=116.3
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCceeeeeC-CCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhc
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTN-KPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~~~~~~~-~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (415)
.++.++|..|||||+|+.+++.+.+..+.+ +.|...-.....+.....++.+|||+| ++.+.++ +.++++
T Consensus 7 fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaG--qe~frsv-------~~syYr 77 (216)
T KOG0098|consen 7 FKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAG--QESFRSV-------TRSYYR 77 (216)
T ss_pred EEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCC--cHHHHHH-------HHHHhc
Confidence 489999999999999999999998865443 111111122233556677899999999 5666554 556689
Q ss_pred ccceEEEEecCCCC--CchHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHHH-HHHHhhcCCCccEEEcccCCCCCH
Q 014942 195 NADCIVVLVDACKA--PERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKK-LEWYEKFTDVDEVIPVSAKYGHGV 271 (415)
Q Consensus 195 ~aD~ii~VvD~~~~--~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~~-~~~~~~~~~~~~i~~vSA~~g~gv 271 (415)
.+-++|+|+|.+.. +..+..|+....+....+..++|++||+||...+.+... -+.+.+..++ .++++||++++||
T Consensus 78 ~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgL-ifmETSakt~~~V 156 (216)
T KOG0098|consen 78 GAAGALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGL-IFMETSAKTAENV 156 (216)
T ss_pred cCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCc-eeehhhhhhhhhH
Confidence 99999999999854 367778888776665578889999999999876655433 3344444444 6789999999999
Q ss_pred HHHHHHHHhhC
Q 014942 272 EDIRDWILTKL 282 (415)
Q Consensus 272 ~eL~~~L~~~l 282 (415)
++.|......+
T Consensus 157 EEaF~nta~~I 167 (216)
T KOG0098|consen 157 EEAFINTAKEI 167 (216)
T ss_pred HHHHHHHHHHH
Confidence 99988776544
No 171
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.79 E-value=1.3e-18 Score=179.18 Aligned_cols=237 Identities=19% Similarity=0.133 Sum_probs=152.6
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCc--ee---eee----------C------CCCceEEeEEEEEeCCCeeEEEEeCCC
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQK--LS---IVT----------N------KPQTTRHRILGICSGPEYQMILYDTPG 172 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~--~~---~~~----------~------~~~tt~~~~~~~~~~~~~~l~liDtpG 172 (415)
+..+|+|+|++|+|||||+++|+... .. .+. + ..+.|.......+.+.++.+++|||||
T Consensus 9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG 88 (526)
T PRK00741 9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPG 88 (526)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCC
Confidence 44589999999999999999997321 11 011 0 011122222334667788999999999
Q ss_pred CchhhhhhHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChhH---HHHHHH
Q 014942 173 IIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE---IAKKLE 249 (415)
Q Consensus 173 ~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~---~~~~~~ 249 (415)
+. .+ ...+..++..+|++|+|+|++++.......++..... .++|+++++||+|+..... +.++.+
T Consensus 89 ~~--df-------~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~--~~iPiiv~iNK~D~~~a~~~~~l~~i~~ 157 (526)
T PRK00741 89 HE--DF-------SEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRL--RDTPIFTFINKLDRDGREPLELLDEIEE 157 (526)
T ss_pred ch--hh-------HHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHh--cCCCEEEEEECCcccccCHHHHHHHHHH
Confidence 53 22 2334556789999999999998887777777776666 7899999999999864221 111111
Q ss_pred HHh-----------------------------------------------------------------------------
Q 014942 250 WYE----------------------------------------------------------------------------- 252 (415)
Q Consensus 250 ~~~----------------------------------------------------------------------------- 252 (415)
.+.
T Consensus 158 ~l~~~~~p~~~Pig~~~~f~Gvvdl~~~~~~~~~~~~~~~~~~~e~~~~~dd~lle~~l~~~~~~~l~~~lel~~~~~~~ 237 (526)
T PRK00741 158 VLGIACAPITWPIGMGKRFKGVYDLYNDEVELYQPGEGHTIQEVEIIKGLDNPELDELLGEDLAEQLREELELVQGASNE 237 (526)
T ss_pred HhCCCCeeEEeccccCCceeEEEEeecceeeecccCCCCcceeeeeccCCCHHHHHHHhcccHHHHHHHHHHhhhhcccc
Confidence 000
Q ss_pred ------hcCCCccEEEcccCCCCCHHHHHHHHHhhCCCCCCCCCCCCccccCCchhHHHHHHHHHHHHhh-cCCCCCceE
Q 014942 253 ------KFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKFQDIVSEHPERFFVGEIIREKIFMQ-YRNEVPYAC 325 (415)
Q Consensus 253 ------~~~~~~~i~~vSA~~g~gv~eL~~~L~~~l~~~~~~~~~~~~~~t~~~~~~~i~eiireki~~~-~~~eipys~ 325 (415)
......|+++.||.+|.||..|++.|.+.+|.. ...+.....+...+. .+.+.++ |+... -.+..+..+
T Consensus 238 ~~~~~~~~~~~~PV~~GSA~~n~Gv~~LLd~i~~~~P~P-~~~~~~~~~~~~~~~-~~~~~VF--K~~~~m~~~~~grla 313 (526)
T PRK00741 238 FDLEAFLAGELTPVFFGSALNNFGVQEFLDAFVEWAPAP-QPRQTDEREVEPTEE-KFSGFVF--KIQANMDPKHRDRIA 313 (526)
T ss_pred hhHHHHhcCCeEEEEEeecccCcCHHHHHHHHHHHCCCC-CcccccceeecCCCC-ceEEEEE--EEEecCCCCcCceEE
Confidence 011235799999999999999999999999863 221210011111111 1233333 22111 245778899
Q ss_pred EEEEEEEEecCCCeeEEEEEEEEeeCCceeEEeecCChHH
Q 014942 326 QVNVVSYKTRPTAKDFIQVEIVVEKNSQKIILIGKGGKAL 365 (415)
Q Consensus 326 ~v~i~~~~~~~~~~~~i~~~~~~~r~~q~~iiiG~~g~~i 365 (415)
.++|.+|+.+.+..+++......+|.++.+.+.|.....+
T Consensus 314 fvRV~sG~l~~g~~v~~~~~~k~~ri~~~~~~~g~~~~~v 353 (526)
T PRK00741 314 FVRVCSGKFEKGMKVRHVRTGKDVRISNALTFMAQDREHV 353 (526)
T ss_pred EEEEeccEECCCCEEEeccCCceEEecceEEEecCCceEC
Confidence 9999999998887777666666667777777777665444
No 172
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.79 E-value=1.9e-18 Score=154.34 Aligned_cols=157 Identities=22% Similarity=0.306 Sum_probs=103.2
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEe--CCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhh
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~--~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~ 193 (415)
.+|+++|.+|||||||++++++..+. ....+++......... ..+..+.+|||||. ..+..+ ...++
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~--~~~~~~-------~~~~~ 70 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFV--ESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQ--DEYSIL-------PQKYS 70 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCc--cccCcchhhhEEEEEEECCEEEEEEEEECCCh--HhhHHH-------HHHHH
Confidence 48999999999999999999987653 2233333222222222 23456789999994 333322 23446
Q ss_pred cccceEEEEecCCCCC--chHHHHHHHHhccc-CCCCCEEEEEeCCCCCChhHHH-HHHHHHhhcCCCccEEEcccCCCC
Q 014942 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYGH 269 (415)
Q Consensus 194 ~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~-~~~~piilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~i~~vSA~~g~ 269 (415)
..++++++|+|.++.. +....++..+++.. ..+.|+++|+||+|+.....+. .....+....+ .+++++||++|.
T Consensus 71 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 149 (180)
T cd04137 71 IGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWG-AAFLESSARENE 149 (180)
T ss_pred hhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcC-CeEEEEeCCCCC
Confidence 7899999999988643 33333444443322 2578999999999987433221 11122222222 479999999999
Q ss_pred CHHHHHHHHHhhCCC
Q 014942 270 GVEDIRDWILTKLPL 284 (415)
Q Consensus 270 gv~eL~~~L~~~l~~ 284 (415)
|+.+++.+|.+.+..
T Consensus 150 gv~~l~~~l~~~~~~ 164 (180)
T cd04137 150 NVEEAFELLIEEIEK 164 (180)
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999987654
No 173
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.78 E-value=1.7e-18 Score=185.13 Aligned_cols=233 Identities=15% Similarity=0.075 Sum_probs=153.0
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceee-----ee------------CCCCceEEeEEEEEeCCCeeEEEEeCCCCchh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI-----VT------------NKPQTTRHRILGICSGPEYQMILYDTPGIIEK 176 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~-----~~------------~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~ 176 (415)
+-.+|+|+|++|+|||||+|+|+.....+ +. ...++|.+.....+.+.+.++.+|||||+..
T Consensus 9 ~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~- 87 (689)
T TIGR00484 9 RFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVD- 87 (689)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcc-
Confidence 34489999999999999999997432111 11 1346677776777788899999999999743
Q ss_pred hhhhHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChh---HHHHHHHHHh-
Q 014942 177 KIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG---EIAKKLEWYE- 252 (415)
Q Consensus 177 ~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~---~~~~~~~~~~- 252 (415)
+ ...+..+++.+|++|+|+|+.++....+..++..+.. .+.|+++|+||+|+.... .+..+...+.
T Consensus 88 -~-------~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~--~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~ 157 (689)
T TIGR00484 88 -F-------TVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANR--YEVPRIAFVNKMDKTGANFLRVVNQIKQRLGA 157 (689)
T ss_pred -h-------hHHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHH--cCCCEEEEEECCCCCCCCHHHHHHHHHHHhCC
Confidence 1 2235566889999999999998887777667666665 679999999999986421 1111111000
Q ss_pred --------------------------------------------------------------------------------
Q 014942 253 -------------------------------------------------------------------------------- 252 (415)
Q Consensus 253 -------------------------------------------------------------------------------- 252 (415)
T Consensus 158 ~~~~~~ipis~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yle~~~~~~ 237 (689)
T TIGR00484 158 NAVPIQLPIGAEDNFIGVIDLVEMKAYFFNGDKGTKAIEKEIPSDLLEQAKELRENLVEAVAEFDEELMEKYLEGEELTI 237 (689)
T ss_pred CceeEEeccccCCCceEEEECccceEEecccCCCceeeeccCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCCCCH
Confidence
Q ss_pred -----------hcCCCccEEEcccCCCCCHHHHHHHHHhhCCCCCCCCCCCC---------ccccCCchhHHHHHHHHHH
Q 014942 253 -----------KFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKFQ---------DIVSEHPERFFVGEIIREK 312 (415)
Q Consensus 253 -----------~~~~~~~i~~vSA~~g~gv~eL~~~L~~~l~~~~~~~~~~~---------~~~t~~~~~~~i~eiirek 312 (415)
....+.|++..||.+|.|++.|++.|...+|... ..+... ......|...+++.++ |
T Consensus 238 ~~l~~~l~~~~~~~~~~PV~~gSa~~~~Gv~~LLd~I~~~lPsP~-~~~~~~~~~~~~~~~~~~~~~~~~~l~a~Vf--K 314 (689)
T TIGR00484 238 EEIKNAIRKGVLNCEFFPVLCGSAFKNKGVQLLLDAVVDYLPSPT-DVPAIKGIDPDTEKEIERKASDDEPFSALAF--K 314 (689)
T ss_pred HHHHHHHHHHHhcCCEEEEEeccccCCccHHHHHHHHHHHCCCch-hcccccccCCCCCceeeecCCCCCceEEEEE--E
Confidence 0112347788899999999999999999998632 111100 0011112222333333 2
Q ss_pred HHhhcCCCCCceEEEEEEEEEecCCCeeEEEEEEEEeeCCceeEEeecCC
Q 014942 313 IFMQYRNEVPYACQVNVVSYKTRPTAKDFIQVEIVVEKNSQKIILIGKGG 362 (415)
Q Consensus 313 i~~~~~~eipys~~v~i~~~~~~~~~~~~i~~~~~~~r~~q~~iiiG~~g 362 (415)
+. ..+..|..+.+++.+|+.+.+..+++......++.++.+.+.|...
T Consensus 315 ~~--~d~~~G~i~~~RV~sGtL~~g~~v~~~~~~~~~~i~~l~~~~g~~~ 362 (689)
T TIGR00484 315 VA--TDPFVGQLTFVRVYSGVLKSGSYVKNSRKNKKERVGRLVKMHANNR 362 (689)
T ss_pred ee--ecCCCCeEEEEEEEEeEEcCCCEEEeCCCCceEEecceEEeecCCc
Confidence 22 3677889999999999998877666543333344455566655543
No 174
>PRK10218 GTP-binding protein; Provisional
Probab=99.78 E-value=4.3e-18 Score=177.51 Aligned_cols=202 Identities=17% Similarity=0.187 Sum_probs=139.8
Q ss_pred ccEEEEEecCCCCHHHHHHHHhCCceeee---------------eCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhh
Q 014942 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIV---------------TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIH 179 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~~~~~~~~---------------~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~ 179 (415)
-.+|+|+|+.++|||||+++|+....... ....+.|.......+.+.+..+.+|||||+. .+
T Consensus 5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~--df- 81 (607)
T PRK10218 5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHA--DF- 81 (607)
T ss_pred ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcc--hh-
Confidence 34899999999999999999986321110 1233455555555677888999999999953 32
Q ss_pred hHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCCh---hHHHHHHHHHhhc--
Q 014942 180 MLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP---GEIAKKLEWYEKF-- 254 (415)
Q Consensus 180 ~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~---~~~~~~~~~~~~~-- 254 (415)
...+..+++.+|++|+|+|+.++.......++..+.. .++|.++|+||+|+... ..+.+..+.+...
T Consensus 82 ------~~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~--~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~ 153 (607)
T PRK10218 82 ------GGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFA--YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDA 153 (607)
T ss_pred ------HHHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHH--cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCc
Confidence 2335566899999999999998877666666665555 68899999999998643 2233333333221
Q ss_pred ---CCCccEEEcccCCCC----------CHHHHHHHHHhhCCCCCCCCCCCCccccCCchhHHHHHHHHHHHHhhcCCCC
Q 014942 255 ---TDVDEVIPVSAKYGH----------GVEDIRDWILTKLPLGPAYYPKFQDIVSEHPERFFVGEIIREKIFMQYRNEV 321 (415)
Q Consensus 255 ---~~~~~i~~vSA~~g~----------gv~eL~~~L~~~l~~~~~~~~~~~~~~t~~~~~~~i~eiireki~~~~~~ei 321 (415)
....|++++||++|. |+..|++.|.+.+|.... -+ +.|....+. ++ .+.+.+
T Consensus 154 ~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P~~-~~-------~~Pl~~~V~-----k~--~~d~~~ 218 (607)
T PRK10218 154 TDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAPDV-DL-------DGPFQMQIS-----QL--DYNSYV 218 (607)
T ss_pred cccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCCCC-CC-------CCCeEEEEE-----ee--EecCCC
Confidence 112579999999998 699999999999985321 11 223222222 11 136778
Q ss_pred CceEEEEEEEEEecCCCeeEE
Q 014942 322 PYACQVNVVSYKTRPTAKDFI 342 (415)
Q Consensus 322 pys~~v~i~~~~~~~~~~~~i 342 (415)
|..+..+|.+|+.+.+..+.+
T Consensus 219 G~i~~gRV~sG~lk~Gd~v~~ 239 (607)
T PRK10218 219 GVIGIGRIKRGKVKPNQQVTI 239 (607)
T ss_pred cEEEEEEEEeCcCcCCCEEEE
Confidence 888999999999887766554
No 175
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.78 E-value=2.6e-18 Score=155.89 Aligned_cols=154 Identities=18% Similarity=0.172 Sum_probs=98.1
Q ss_pred cEEEEEecCCCCHHHHHH-HHhCCceee---eeCCCCceE--EeEE-E---------EEeCCCeeEEEEeCCCCchhhhh
Q 014942 116 GYVAVLGKPNVGKSTLAN-QMIGQKLSI---VTNKPQTTR--HRIL-G---------ICSGPEYQMILYDTPGIIEKKIH 179 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln-~l~~~~~~~---~~~~~~tt~--~~~~-~---------~~~~~~~~l~liDtpG~~~~~~~ 179 (415)
.+|+++|.+|||||||+. ++.+..+.. ...+.+|.. +... . .+......+.+|||+|.. .
T Consensus 3 ~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~--~-- 78 (195)
T cd01873 3 IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDH--D-- 78 (195)
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCCh--h--
Confidence 489999999999999996 565443210 122222321 1111 1 234456789999999952 1
Q ss_pred hHhHHHHHHHHhhhcccceEEEEecCCCCC--chHHHHHHHHhcccCCCCCEEEEEeCCCCCCh----------------
Q 014942 180 MLDSMMMKNVRSAGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKP---------------- 241 (415)
Q Consensus 180 ~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~---------------- 241 (415)
.+ ...+++++|++|+|+|.++.. ......+...++....+.|+++|+||+|+...
T Consensus 79 ~~-------~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~ 151 (195)
T cd01873 79 KD-------RRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLARPI 151 (195)
T ss_pred hh-------hcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhccccccccc
Confidence 11 123578999999999998754 33332233333332357899999999998631
Q ss_pred ---hHH-HHHHHHHhhcCCCccEEEcccCCCCCHHHHHHHHHhh
Q 014942 242 ---GEI-AKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTK 281 (415)
Q Consensus 242 ---~~~-~~~~~~~~~~~~~~~i~~vSA~~g~gv~eL~~~L~~~ 281 (415)
..+ .+....+....+. ++++|||++|.||+++|+.+++.
T Consensus 152 ~~~~~V~~~e~~~~a~~~~~-~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 152 KNADILPPETGRAVAKELGI-PYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred ccCCccCHHHHHHHHHHhCC-EEEEcCCCCCCCHHHHHHHHHHh
Confidence 111 1222333333343 89999999999999999999864
No 176
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.78 E-value=5.2e-18 Score=177.61 Aligned_cols=201 Identities=23% Similarity=0.253 Sum_probs=129.9
Q ss_pred ccEEEEEecCCCCHHHHHHHHhCCceee--------ee------CCCCceEEeEEEEE-----eCCCeeEEEEeCCCCch
Q 014942 115 SGYVAVLGKPNVGKSTLANQMIGQKLSI--------VT------NKPQTTRHRILGIC-----SGPEYQMILYDTPGIIE 175 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~~~~~~~--------~~------~~~~tt~~~~~~~~-----~~~~~~l~liDtpG~~~ 175 (415)
..+++|+|+.++|||||+++|+.....+ +. ...+.|.......+ ...++.+.||||||+.
T Consensus 7 iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~- 85 (600)
T PRK05433 7 IRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHV- 85 (600)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcH-
Confidence 3489999999999999999998532110 00 11233322211112 2336789999999963
Q ss_pred hhhhhHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHHHHHHHhhcC
Q 014942 176 KKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFT 255 (415)
Q Consensus 176 ~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~ 255 (415)
.+ ...+..++..||++|+|+|++++.+......+..... .+.|+++|+||+|+..... ....+.+....
T Consensus 86 -dF-------~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~--~~lpiIvViNKiDl~~a~~-~~v~~ei~~~l 154 (600)
T PRK05433 86 -DF-------SYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE--NDLEIIPVLNKIDLPAADP-ERVKQEIEDVI 154 (600)
T ss_pred -HH-------HHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH--CCCCEEEEEECCCCCcccH-HHHHHHHHHHh
Confidence 22 2335556889999999999998876555433333333 5789999999999864321 11222222222
Q ss_pred CC--ccEEEcccCCCCCHHHHHHHHHhhCCCCCCCCCCCCccccCCchhHHHHHHHHHHHHhhcCCCCCceEEEEEEEEE
Q 014942 256 DV--DEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKFQDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYK 333 (415)
Q Consensus 256 ~~--~~i~~vSA~~g~gv~eL~~~L~~~l~~~~~~~~~~~~~~t~~~~~~~i~eiireki~~~~~~eipys~~v~i~~~~ 333 (415)
+. ..++++||++|.|+++|+++|.+.+|.... - .+.|.+.++ + + ..+.+..|..+.+++.+|+
T Consensus 155 g~~~~~vi~iSAktG~GI~~Ll~~I~~~lp~P~~-~-------~~~pl~~~V---f--d--~~~d~~~G~v~~~rV~sG~ 219 (600)
T PRK05433 155 GIDASDAVLVSAKTGIGIEEVLEAIVERIPPPKG-D-------PDAPLKALI---F--D--SWYDNYRGVVVLVRVVDGT 219 (600)
T ss_pred CCCcceEEEEecCCCCCHHHHHHHHHHhCccccC-C-------CCCCceEEE---E--E--EEecCCCceEEEEEEEcCE
Confidence 22 358999999999999999999999875321 1 122322111 1 1 1236788889999999999
Q ss_pred ecCCCeeEE
Q 014942 334 TRPTAKDFI 342 (415)
Q Consensus 334 ~~~~~~~~i 342 (415)
.+.+..+.+
T Consensus 220 Lk~Gd~i~~ 228 (600)
T PRK05433 220 LKKGDKIKM 228 (600)
T ss_pred EecCCEEEE
Confidence 887765544
No 177
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.78 E-value=6.6e-18 Score=155.63 Aligned_cols=166 Identities=18% Similarity=0.214 Sum_probs=109.2
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceee-eeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI-VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~-~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~ 192 (415)
...+|+++|++|||||||+++++...+.. .....+............+...+.+|||+|. ..+..+. ..+
T Consensus 8 ~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~--~~~~~~~-------~~~ 78 (215)
T PTZ00132 8 PEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQ--EKFGGLR-------DGY 78 (215)
T ss_pred CCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCc--hhhhhhh-------HHH
Confidence 44699999999999999998877655421 1222222222222223455678999999994 3443332 334
Q ss_pred hcccceEEEEecCCCCC--chHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHHHHHHHhhcCCCccEEEcccCCCCC
Q 014942 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHG 270 (415)
Q Consensus 193 ~~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~g 270 (415)
+..++++++|+|.++.. .....|+..+... ..+.|+++|+||+|+............. ...+ ..++++||++|.|
T Consensus 79 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~i~lv~nK~Dl~~~~~~~~~~~~~-~~~~-~~~~e~Sa~~~~~ 155 (215)
T PTZ00132 79 YIKGQCAIIMFDVTSRITYKNVPNWHRDIVRV-CENIPIVLVGNKVDVKDRQVKARQITFH-RKKN-LQYYDISAKSNYN 155 (215)
T ss_pred hccCCEEEEEEECcCHHHHHHHHHHHHHHHHh-CCCCCEEEEEECccCccccCCHHHHHHH-HHcC-CEEEEEeCCCCCC
Confidence 67899999999998654 2233344333322 2578999999999986432222222222 2222 4789999999999
Q ss_pred HHHHHHHHHhhCCCCCCCCCC
Q 014942 271 VEDIRDWILTKLPLGPAYYPK 291 (415)
Q Consensus 271 v~eL~~~L~~~l~~~~~~~~~ 291 (415)
+++++.+|++.+...|..+.-
T Consensus 156 v~~~f~~ia~~l~~~p~~~~l 176 (215)
T PTZ00132 156 FEKPFLWLARRLTNDPNLVFV 176 (215)
T ss_pred HHHHHHHHHHHHhhcccceec
Confidence 999999999988877765543
No 178
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.78 E-value=1.8e-18 Score=178.28 Aligned_cols=237 Identities=19% Similarity=0.147 Sum_probs=152.3
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCc--ee---eee----------C------CCCceEEeEEEEEeCCCeeEEEEeCCC
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQK--LS---IVT----------N------KPQTTRHRILGICSGPEYQMILYDTPG 172 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~--~~---~~~----------~------~~~tt~~~~~~~~~~~~~~l~liDtpG 172 (415)
+..+|+|+|++|+|||||+++|+... .. .+. + ..+.|.......+.+.+.++.+|||||
T Consensus 10 ~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTPG 89 (527)
T TIGR00503 10 KRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTPG 89 (527)
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECCC
Confidence 55689999999999999999986321 11 111 0 112222333344677889999999999
Q ss_pred CchhhhhhHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCC--hhHHHHHH-H
Q 014942 173 IIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK--PGEIAKKL-E 249 (415)
Q Consensus 173 ~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~--~~~~~~~~-~ 249 (415)
+ .. +...+..++..+|++|+|+|++.+.......+++.++. .+.|+++++||+|+.. ...+.+.+ .
T Consensus 90 ~--~d-------f~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~--~~~PiivviNKiD~~~~~~~~ll~~i~~ 158 (527)
T TIGR00503 90 H--ED-------FSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRL--RDTPIFTFMNKLDRDIRDPLELLDEVEN 158 (527)
T ss_pred h--hh-------HHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHh--cCCCEEEEEECccccCCCHHHHHHHHHH
Confidence 5 22 23345566889999999999998887777777777666 6899999999999853 21111100 0
Q ss_pred HHh-----------------------------------------------------------------------------
Q 014942 250 WYE----------------------------------------------------------------------------- 252 (415)
Q Consensus 250 ~~~----------------------------------------------------------------------------- 252 (415)
.+.
T Consensus 159 ~l~~~~~~~~~PIg~~~~f~gv~d~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~le~~~~~~~~ 238 (527)
T TIGR00503 159 ELKINCAPITWPIGCGKLFKGVYHLLKDETYLYQSGTGGTIQAVRQVKGLNNPALDSAVGSDLAQQLRDELELVEGASNE 238 (527)
T ss_pred HhCCCCccEEEEecCCCceeEEEEcccCcceecCccCCCceeEeehhccCCChhhhhhhhHHHHHHHHHHHHHHhhhccc
Confidence 000
Q ss_pred ------hcCCCccEEEcccCCCCCHHHHHHHHHhhCCCCCCCCCCCCccccCCchhHHHHHHHHHHHHhhcC-CCCCceE
Q 014942 253 ------KFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKFQDIVSEHPERFFVGEIIREKIFMQYR-NEVPYAC 325 (415)
Q Consensus 253 ------~~~~~~~i~~vSA~~g~gv~eL~~~L~~~l~~~~~~~~~~~~~~t~~~~~~~i~eiireki~~~~~-~eipys~ 325 (415)
......|+|+.||.++.||..|++.|.+.+|.. ...+.....+.. ....+.+.++ |+...++ +..+..+
T Consensus 239 ~~~~~~~~~~~~PV~~GSA~~n~Gv~~LLd~i~~~~PsP-~~~~~~~~~~~~-~~~~~~~~VF--K~~~~mdp~~~gria 314 (527)
T TIGR00503 239 FDLAAFHGGEMTPVFFGTALGNFGVDHFLDGLLQWAPKP-EARQSDTRTVEP-TEEKFSGFVF--KIQANMDPKHRDRVA 314 (527)
T ss_pred cCHHHHhcCCeeEEEEeecccCccHHHHHHHHHHHCCCC-ccccCCceecCC-CCCCeeEEEE--EEEeccCcccCceEE
Confidence 011234789999999999999999999999863 222210011111 1111333333 2222224 4788899
Q ss_pred EEEEEEEEecCCCeeEEEEEEEEeeCCceeEEeecCChHH
Q 014942 326 QVNVVSYKTRPTAKDFIQVEIVVEKNSQKIILIGKGGKAL 365 (415)
Q Consensus 326 ~v~i~~~~~~~~~~~~i~~~~~~~r~~q~~iiiG~~g~~i 365 (415)
.++|.+|+.+.+..+++.....-+|.++.+.+.|+....+
T Consensus 315 f~RV~sG~l~~g~~v~~~~~~k~~ri~~~~~~~g~~~~~v 354 (527)
T TIGR00503 315 FMRVVSGKYEKGMKLKHVRTGKDVVISDALTFMAGDREHV 354 (527)
T ss_pred EEEEeeeEEcCCCEEEecCCCCcEEecchhhhhcCCceEc
Confidence 9999999998887776655555566666666666554433
No 179
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.78 E-value=3.3e-18 Score=177.77 Aligned_cols=156 Identities=23% Similarity=0.274 Sum_probs=105.5
Q ss_pred CCccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCC-ceEEeEEEEEe------------------CCCeeEEEEeCCCC
Q 014942 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQ-TTRHRILGICS------------------GPEYQMILYDTPGI 173 (415)
Q Consensus 113 ~~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~-tt~~~~~~~~~------------------~~~~~l~liDtpG~ 173 (415)
.|+|.|+++|++|+|||||+|+|++..+. ...++ +|++.-...+. ....++.||||||+
T Consensus 2 ~r~piV~IiG~~d~GKTSLln~l~~~~v~--~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~ 79 (590)
T TIGR00491 2 LRSPIVSVLGHVDHGKTTLLDKIRGSAVA--KREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGH 79 (590)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccccc--cccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCc
Confidence 47889999999999999999999988764 23333 33321111110 01124899999994
Q ss_pred chhhhhhHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChhH----------
Q 014942 174 IEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE---------- 243 (415)
Q Consensus 174 ~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~---------- 243 (415)
+.+..+ ...++..+|++++|+|++++...........++. .+.|+++|+||+|+.....
T Consensus 80 --e~f~~l-------~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~--~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~ 148 (590)
T TIGR00491 80 --EAFTNL-------RKRGGALADLAILIVDINEGFKPQTQEALNILRM--YKTPFVVAANKIDRIPGWRSHEGRPFMES 148 (590)
T ss_pred --HhHHHH-------HHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHH--cCCCEEEEEECCCccchhhhccCchHHHH
Confidence 455443 2334689999999999998776665555555555 6789999999999963210
Q ss_pred -------HHH--------HHHHHh-------------hcCCCccEEEcccCCCCCHHHHHHHHHhh
Q 014942 244 -------IAK--------KLEWYE-------------KFTDVDEVIPVSAKYGHGVEDIRDWILTK 281 (415)
Q Consensus 244 -------~~~--------~~~~~~-------------~~~~~~~i~~vSA~~g~gv~eL~~~L~~~ 281 (415)
+.. ....+. ...+..+++++||++|+|+++|+++|...
T Consensus 149 sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l 214 (590)
T TIGR00491 149 FSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGL 214 (590)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHH
Confidence 000 000111 12344689999999999999999998754
No 180
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.78 E-value=1.6e-18 Score=145.78 Aligned_cols=165 Identities=19% Similarity=0.211 Sum_probs=116.5
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCC-CCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNK-PQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~-~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~ 192 (415)
-..+|+++|.+|||||||+-+++...+....+. .|.........+.....++.+|||+| +++|+.+ +.++
T Consensus 10 ~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAG--qErFRtL-------TpSy 80 (209)
T KOG0080|consen 10 TTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAG--QERFRTL-------TPSY 80 (209)
T ss_pred eeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccc--hHhhhcc-------CHhH
Confidence 346999999999999999999998887532222 22222223333556667899999999 6777766 4455
Q ss_pred hcccceEEEEecCCCCC--chHHHHHHHHhccc-CCCCCEEEEEeCCCCCChhHHHHH--HHHHhhcCCCccEEEcccCC
Q 014942 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKK--LEWYEKFTDVDEVIPVSAKY 267 (415)
Q Consensus 193 ~~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~-~~~~piilV~NK~Dl~~~~~~~~~--~~~~~~~~~~~~i~~vSA~~ 267 (415)
++.|.++|+|+|.+... ..++.|+.++--.. .+++-.++|+||+|....+.+... +...++ ..+-++++||++
T Consensus 81 yRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~--h~~LFiE~SAkt 158 (209)
T KOG0080|consen 81 YRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARK--HRCLFIECSAKT 158 (209)
T ss_pred hccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHh--hCcEEEEcchhh
Confidence 89999999999998653 55666665542221 155667899999998754443322 223333 234689999999
Q ss_pred CCCHHHHHHHHHhhCCCCCCCC
Q 014942 268 GHGVEDIRDWILTKLPLGPAYY 289 (415)
Q Consensus 268 g~gv~eL~~~L~~~l~~~~~~~ 289 (415)
.+||+..|+.|+..+-+.|.+.
T Consensus 159 ~~~V~~~FeelveKIi~tp~l~ 180 (209)
T KOG0080|consen 159 RENVQCCFEELVEKIIETPSLW 180 (209)
T ss_pred hccHHHHHHHHHHHHhcCcchh
Confidence 9999999999999887766544
No 181
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.78 E-value=6.3e-18 Score=157.85 Aligned_cols=157 Identities=20% Similarity=0.234 Sum_probs=112.2
Q ss_pred EEEEEecCCCCHHHHHHHHhCCceee-----ee------------CCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhh
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQKLSI-----VT------------NKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIH 179 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~~~~~-----~~------------~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~ 179 (415)
.|+++|++|+|||||+++|+.....+ +. ...+.|.......+.+.+.++.+|||||+.+
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~---- 76 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMD---- 76 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccc----
Confidence 48999999999999999998643211 00 1122333344455677888999999999632
Q ss_pred hHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCCh---hHHHHHHHHHh----
Q 014942 180 MLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP---GEIAKKLEWYE---- 252 (415)
Q Consensus 180 ~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~---~~~~~~~~~~~---- 252 (415)
+...+..+++.+|++++|+|++++.......+++.+.. .+.|+++|+||+|+... ..+.++.+.+.
T Consensus 77 -----f~~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~--~~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~~~~ 149 (237)
T cd04168 77 -----FIAEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRK--LNIPTIIFVNKIDRAGADLEKVYQEIKEKLSSDIV 149 (237)
T ss_pred -----hHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHH--cCCCEEEEEECccccCCCHHHHHHHHHHHHCCCeE
Confidence 23345567889999999999998887777777776666 68999999999998742 11111111111
Q ss_pred -------------------------------------------------------hcCCCccEEEcccCCCCCHHHHHHH
Q 014942 253 -------------------------------------------------------KFTDVDEVIPVSAKYGHGVEDIRDW 277 (415)
Q Consensus 253 -------------------------------------------------------~~~~~~~i~~vSA~~g~gv~eL~~~ 277 (415)
....+.|+++.||.++.|+..|++.
T Consensus 150 ~~~~p~~~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~~ll~~ 229 (237)
T cd04168 150 PMQKVGLAPNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGIGIEELLEG 229 (237)
T ss_pred EEECCcEeeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCcCHHHHHHH
Confidence 1223568999999999999999999
Q ss_pred HHhhCCC
Q 014942 278 ILTKLPL 284 (415)
Q Consensus 278 L~~~l~~ 284 (415)
|.+.+|.
T Consensus 230 ~~~~~p~ 236 (237)
T cd04168 230 ITKLFPT 236 (237)
T ss_pred HHHhcCC
Confidence 9999975
No 182
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.78 E-value=4.6e-18 Score=177.68 Aligned_cols=157 Identities=21% Similarity=0.289 Sum_probs=114.6
Q ss_pred EEEEEecCCCCHHHHHHHHhCCceee--eeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhc
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQKLSI--VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~~~~~--~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (415)
.|+++|++|+|||||+++|++..... ....++.|.+.....+...+..+.||||||+ +. +...+..++.
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGh--e~-------f~~~~~~g~~ 72 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGH--EK-------FISNAIAGGG 72 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCH--HH-------HHHHHHhhhc
Confidence 68999999999999999999754211 1234566766665566666789999999994 32 3444566678
Q ss_pred ccceEEEEecCCCCCchHHHHHHHHhcccCCCCC-EEEEEeCCCCCChhHHHHHH----HHHhhcC--CCccEEEcccCC
Q 014942 195 NADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKDLIKPGEIAKKL----EWYEKFT--DVDEVIPVSAKY 267 (415)
Q Consensus 195 ~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~p-iilV~NK~Dl~~~~~~~~~~----~~~~~~~--~~~~i~~vSA~~ 267 (415)
.+|++++|+|++++...........+.. .+.| +++|+||+|+.+...+.... +.+.... ...+++++||++
T Consensus 73 ~aD~aILVVDa~~G~~~qT~ehl~il~~--lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~t 150 (581)
T TIGR00475 73 GIDAALLVVDADEGVMTQTGEHLAVLDL--LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKT 150 (581)
T ss_pred cCCEEEEEEECCCCCcHHHHHHHHHHHH--cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCC
Confidence 9999999999998775555555555555 5677 99999999998765432222 2222211 146899999999
Q ss_pred CCCHHHHHHHHHhhCCC
Q 014942 268 GHGVEDIRDWILTKLPL 284 (415)
Q Consensus 268 g~gv~eL~~~L~~~l~~ 284 (415)
|.|+++++++|.+.+..
T Consensus 151 G~GI~eL~~~L~~l~~~ 167 (581)
T TIGR00475 151 GQGIGELKKELKNLLES 167 (581)
T ss_pred CCCchhHHHHHHHHHHh
Confidence 99999999999877654
No 183
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.77 E-value=4.2e-18 Score=153.51 Aligned_cols=156 Identities=20% Similarity=0.199 Sum_probs=100.3
Q ss_pred EEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEE--EeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhc
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~--~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (415)
+|+|+|++|+|||||+++|....+.. ....+........ +......+.+|||||. ..+..+.. ..+.
T Consensus 3 Ki~ivG~~g~GKStLl~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~--~~~~~~~~-------~~~~ 71 (187)
T cd04129 3 KLVIVGDGACGKTSLLSVFTLGEFPE--EYHPTVFENYVTDCRVDGKPVQLALWDTAGQ--EEYERLRP-------LSYS 71 (187)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCc--ccCCcccceEEEEEEECCEEEEEEEEECCCC--hhccccch-------hhcC
Confidence 89999999999999999998665532 1222222222222 2333456889999995 33332221 2367
Q ss_pred ccceEEEEecCCCCC--chHHHHHHHHhcccCCCCCEEEEEeCCCCCChh----------HH-HHHHHHHhhcCCCccEE
Q 014942 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG----------EI-AKKLEWYEKFTDVDEVI 261 (415)
Q Consensus 195 ~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~----------~~-~~~~~~~~~~~~~~~i~ 261 (415)
.+|++++|+|.++.. ......+...++....+.|+++|+||+|+.... .+ ......+.+..+..+++
T Consensus 72 ~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (187)
T cd04129 72 KAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYM 151 (187)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEE
Confidence 899999999987543 233222333333323579999999999985311 00 11122333334445799
Q ss_pred EcccCCCCCHHHHHHHHHhhCC
Q 014942 262 PVSAKYGHGVEDIRDWILTKLP 283 (415)
Q Consensus 262 ~vSA~~g~gv~eL~~~L~~~l~ 283 (415)
+|||++|.|++++++++.+.+.
T Consensus 152 e~Sa~~~~~v~~~f~~l~~~~~ 173 (187)
T cd04129 152 ECSALTGEGVDDVFEAATRAAL 173 (187)
T ss_pred EccCCCCCCHHHHHHHHHHHHh
Confidence 9999999999999999997654
No 184
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.77 E-value=3.6e-18 Score=178.22 Aligned_cols=201 Identities=17% Similarity=0.187 Sum_probs=138.9
Q ss_pred EEEEEecCCCCHHHHHHHHhCCceee-----e----------eCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhH
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQKLSI-----V----------TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHML 181 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~~~~~-----~----------~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l 181 (415)
+|+|+|+.++|||||+++|+...-.. + ....+.|.......+.+.+..+.+|||||+ ..
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh--~D---- 76 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGH--AD---- 76 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCH--HH----
Confidence 69999999999999999998532110 0 112345555555567788899999999995 33
Q ss_pred hHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChh--H-HHHHHHHHhhcC---
Q 014942 182 DSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG--E-IAKKLEWYEKFT--- 255 (415)
Q Consensus 182 ~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~--~-~~~~~~~~~~~~--- 255 (415)
+...+..+++.+|++++|+|+..+...+...++..+.. .++|+++|+||+|+.... . ..+....+....
T Consensus 77 ---F~~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~--~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~ 151 (594)
T TIGR01394 77 ---FGGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALE--LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADD 151 (594)
T ss_pred ---HHHHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHH--CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhcccc
Confidence 23345666889999999999998887777766666665 678999999999986432 2 233333332111
Q ss_pred --CCccEEEcccCCCC----------CHHHHHHHHHhhCCCCCCCCCCCCccccCCchhHHHHHHHHHHHHhhcCCCCCc
Q 014942 256 --DVDEVIPVSAKYGH----------GVEDIRDWILTKLPLGPAYYPKFQDIVSEHPERFFVGEIIREKIFMQYRNEVPY 323 (415)
Q Consensus 256 --~~~~i~~vSA~~g~----------gv~eL~~~L~~~l~~~~~~~~~~~~~~t~~~~~~~i~eiireki~~~~~~eipy 323 (415)
...+++++||++|. |+..|++.|.+.+|..... + +.|....+.. + ...+.+|.
T Consensus 152 e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P~~~-~-------~~pl~~~V~~-----i--~~d~~~Gr 216 (594)
T TIGR01394 152 EQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAPKGD-L-------DEPLQMLVTN-----L--DYDEYLGR 216 (594)
T ss_pred ccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCCCCCC-C-------CCCEEEEEEE-----E--EeeCCCce
Confidence 12479999999996 8999999999999863211 1 2232222211 1 13577888
Q ss_pred eEEEEEEEEEecCCCeeEEE
Q 014942 324 ACQVNVVSYKTRPTAKDFIQ 343 (415)
Q Consensus 324 s~~v~i~~~~~~~~~~~~i~ 343 (415)
.+..++.+|+.+.+..+.+.
T Consensus 217 v~~gRV~sG~lk~G~~V~~~ 236 (594)
T TIGR01394 217 IAIGRVHRGTVKKGQQVALM 236 (594)
T ss_pred EEEEEEEeCEEccCCEEEEe
Confidence 89999999999877665543
No 185
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.77 E-value=7.4e-18 Score=157.08 Aligned_cols=157 Identities=28% Similarity=0.360 Sum_probs=112.0
Q ss_pred EEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhccc
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~a 196 (415)
+|+++|.+|+|||||+|+|.+.... +...+++|.....+.+...+..+.+|||||+...... ...+......+++++
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~-v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~--~~~~~~~~l~~~~~a 78 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSE-VAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAAD--GKGRGRQVIAVARTA 78 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCcc-ccCCCCccccceEEEEEECCeEEEEEECCCccccccc--chhHHHHHHHhhccC
Confidence 7999999999999999999987643 5678888988888887788889999999997432211 112233445668999
Q ss_pred ceEEEEecCCCCCchHHH-------------------------------------------HHHHHhccc----------
Q 014942 197 DCIVVLVDACKAPERIDE-------------------------------------------ILEEGVGDH---------- 223 (415)
Q Consensus 197 D~ii~VvD~~~~~~~~~~-------------------------------------------~l~~~l~~~---------- 223 (415)
|++++|+|+++....... .+..+++++
T Consensus 79 d~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~ 158 (233)
T cd01896 79 DLILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIR 158 (233)
T ss_pred CEEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEc
Confidence 999999998764321111 111111110
Q ss_pred ---------------CCCCCEEEEEeCCCCCChhHHHHHHHHHhhcCCCccEEEcccCCCCCHHHHHHHHHhhCC
Q 014942 224 ---------------KDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLP 283 (415)
Q Consensus 224 ---------------~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gv~eL~~~L~~~l~ 283 (415)
....|+++|+||+|+....+... +.. ..+++++||++|.|+++|++.|.+.+.
T Consensus 159 ~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~~~~~~----~~~---~~~~~~~SA~~g~gi~~l~~~i~~~L~ 226 (233)
T cd01896 159 EDITVDDLIDVIEGNRVYIPCLYVYNKIDLISIEELDL----LAR---QPNSVVISAEKGLNLDELKERIWDKLG 226 (233)
T ss_pred cCCCHHHHHHHHhCCceEeeEEEEEECccCCCHHHHHH----Hhc---CCCEEEEcCCCCCCHHHHHHHHHHHhC
Confidence 12368999999999987655442 222 235899999999999999999988663
No 186
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.77 E-value=2.4e-17 Score=144.26 Aligned_cols=160 Identities=28% Similarity=0.385 Sum_probs=105.5
Q ss_pred EEEEecCCCCHHHHHHHHhCC-ceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhh-hhHhHH---HHHHHHhh
Q 014942 118 VAVLGKPNVGKSTLANQMIGQ-KLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI-HMLDSM---MMKNVRSA 192 (415)
Q Consensus 118 V~ivG~~~vGKSSLln~l~~~-~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~-~~l~~~---~~~~~~~~ 192 (415)
|+++|.+|+|||||+|+|.+. .....+..++.|........ .+ .+.+|||||+..... ...... ........
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~--~~-~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~ 78 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNV--ND-KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLEN 78 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEc--cC-eEEEecCCCccccccCHHHHHHHHHHHHHHHHh
Confidence 899999999999999999953 34445666666655433222 22 899999999743210 000111 11122222
Q ss_pred hcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHHHHHH----HhhcCCCccEEEcccCCC
Q 014942 193 GINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEW----YEKFTDVDEVIPVSAKYG 268 (415)
Q Consensus 193 ~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~~~~~----~~~~~~~~~i~~vSA~~g 268 (415)
...++++++++|...........+...+.. .+.|+++|+||+|+............ +.......+++++||+++
T Consensus 79 ~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~--~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~~~ 156 (170)
T cd01876 79 RENLKGVVLLIDSRHGPTEIDLEMLDWLEE--LGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFSSLKG 156 (170)
T ss_pred ChhhhEEEEEEEcCcCCCHhHHHHHHHHHH--cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEecCCC
Confidence 346788999999987665555555555555 56899999999999755443322222 221234468999999999
Q ss_pred CCHHHHHHHHHhhC
Q 014942 269 HGVEDIRDWILTKL 282 (415)
Q Consensus 269 ~gv~eL~~~L~~~l 282 (415)
.|+.+++++|.+.+
T Consensus 157 ~~~~~l~~~l~~~~ 170 (170)
T cd01876 157 QGIDELRALIEKWL 170 (170)
T ss_pred CCHHHHHHHHHHhC
Confidence 99999999998753
No 187
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.77 E-value=5.6e-18 Score=168.75 Aligned_cols=157 Identities=18% Similarity=0.199 Sum_probs=124.1
Q ss_pred CCccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeC---CCeeEEEEeCCCCchhhhhhHhHHHHHHH
Q 014942 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG---PEYQMILYDTPGIIEKKIHMLDSMMMKNV 189 (415)
Q Consensus 113 ~~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~---~~~~l~liDtpG~~~~~~~~l~~~~~~~~ 189 (415)
.|+|.|+++||...|||||+.++.+.++.. ...-+.|.+.-...+.. ....+.|+|||| ++.|..|+.++
T Consensus 3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va~-~EaGGITQhIGA~~v~~~~~~~~~itFiDTPG--HeAFt~mRaRG---- 75 (509)
T COG0532 3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVAA-GEAGGITQHIGAYQVPLDVIKIPGITFIDTPG--HEAFTAMRARG---- 75 (509)
T ss_pred CCCCEEEEeCcccCCccchhhhHhcCcccc-ccCCceeeEeeeEEEEeccCCCceEEEEcCCc--HHHHHHHHhcC----
Confidence 478999999999999999999999988762 34455676655555554 346999999999 68888887776
Q ss_pred HhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHHHHHHHh-------hcCCCccEEE
Q 014942 190 RSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYE-------KFTDVDEVIP 262 (415)
Q Consensus 190 ~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~-------~~~~~~~i~~ 262 (415)
..-+|++++|+|+.++..+++..-.+.++. .+.|+++++||+|+.+.+... ....+. .+.+...+++
T Consensus 76 ---a~vtDIaILVVa~dDGv~pQTiEAI~hak~--a~vP~iVAiNKiDk~~~np~~-v~~el~~~gl~~E~~gg~v~~Vp 149 (509)
T COG0532 76 ---ASVTDIAILVVAADDGVMPQTIEAINHAKA--AGVPIVVAINKIDKPEANPDK-VKQELQEYGLVPEEWGGDVIFVP 149 (509)
T ss_pred ---CccccEEEEEEEccCCcchhHHHHHHHHHH--CCCCEEEEEecccCCCCCHHH-HHHHHHHcCCCHhhcCCceEEEE
Confidence 678999999999999999988887777777 899999999999998543221 122221 2334568899
Q ss_pred cccCCCCCHHHHHHHHHhhC
Q 014942 263 VSAKYGHGVEDIRDWILTKL 282 (415)
Q Consensus 263 vSA~~g~gv~eL~~~L~~~l 282 (415)
+||++|+|+++|++.|.-..
T Consensus 150 vSA~tg~Gi~eLL~~ill~a 169 (509)
T COG0532 150 VSAKTGEGIDELLELILLLA 169 (509)
T ss_pred eeccCCCCHHHHHHHHHHHH
Confidence 99999999999999887543
No 188
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.77 E-value=2.9e-18 Score=150.21 Aligned_cols=154 Identities=26% Similarity=0.363 Sum_probs=106.0
Q ss_pred EEEEEecCCCCHHHHHHHHhCCceeeeeCCCCce-EEeEEEE--EeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhh
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTT-RHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt-~~~~~~~--~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~ 193 (415)
||+++|.++||||||+++|.+..+.. ....|. .+..... .......+.+||++|. +.+..+.. ..+
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~--~~~~~~~~-------~~~ 69 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPE--NYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQ--ERFDSLRD-------IFY 69 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTS--SSETTSSEEEEEEEEEETTEEEEEEEEEETTS--GGGHHHHH-------HHH
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccc--cccccccccccccccccccccccccccccccc--cccccccc-------ccc
Confidence 69999999999999999999877642 222222 3333333 3344567999999994 44444432 337
Q ss_pred cccceEEEEecCCCCC--chHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHH-HHHHHHhhcCCCccEEEcccCCCCC
Q 014942 194 INADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYGHG 270 (415)
Q Consensus 194 ~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~i~~vSA~~g~g 270 (415)
..+|++|+|+|.++.. .....|+.........+.|++||+||+|+.....+. +....+....+ .+++++||+++.|
T Consensus 70 ~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~-~~~~e~Sa~~~~~ 148 (162)
T PF00071_consen 70 RNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELG-VPYFEVSAKNGEN 148 (162)
T ss_dssp TTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTT-SEEEEEBTTTTTT
T ss_pred cccccccccccccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhC-CEEEEEECCCCCC
Confidence 8999999999987643 445555554443332368999999999987633322 12233333334 6899999999999
Q ss_pred HHHHHHHHHhhC
Q 014942 271 VEDIRDWILTKL 282 (415)
Q Consensus 271 v~eL~~~L~~~l 282 (415)
|.++|..+++.+
T Consensus 149 v~~~f~~~i~~i 160 (162)
T PF00071_consen 149 VKEIFQELIRKI 160 (162)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998754
No 189
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.77 E-value=9.3e-18 Score=159.49 Aligned_cols=113 Identities=19% Similarity=0.215 Sum_probs=87.1
Q ss_pred EEEEEecCCCCHHHHHHHHhCCce-----eeee------------CCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhh
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQKL-----SIVT------------NKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIH 179 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~~~-----~~~~------------~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~ 179 (415)
.|+++|++|+|||||+++|+.... ..+. ...+.|.+.....+.+.+.++.+|||||+.+
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~d---- 76 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVD---- 76 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHH----
Confidence 489999999999999999973211 1111 2345666666666778899999999999632
Q ss_pred hHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCC
Q 014942 180 MLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (415)
Q Consensus 180 ~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~ 240 (415)
+...+..+++.+|++|+|+|+..+....+..++..+.. .++|+++++||+|+..
T Consensus 77 -----f~~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~--~~~p~ivviNK~D~~~ 130 (270)
T cd01886 77 -----FTIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADR--YNVPRIAFVNKMDRTG 130 (270)
T ss_pred -----HHHHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHH--cCCCEEEEEECCCCCC
Confidence 33446677899999999999999887777777777666 6899999999999863
No 190
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.76 E-value=7.2e-18 Score=139.91 Aligned_cols=116 Identities=38% Similarity=0.522 Sum_probs=89.5
Q ss_pred EEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhccc
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~a 196 (415)
+|+|+|.+|+|||||+|+|++.+...++..+++|+......+...+..+.++||||+...............+...+..+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 80 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKS 80 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTE
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHC
Confidence 58999999999999999999987777899999999887767777888999999999865322222112334455556899
Q ss_pred ceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeC
Q 014942 197 DCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNK 235 (415)
Q Consensus 197 D~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK 235 (415)
|+++||+|++++.......+.+.++ .+.|+++|+||
T Consensus 81 d~ii~vv~~~~~~~~~~~~~~~~l~---~~~~~i~v~NK 116 (116)
T PF01926_consen 81 DLIIYVVDASNPITEDDKNILRELK---NKKPIILVLNK 116 (116)
T ss_dssp SEEEEEEETTSHSHHHHHHHHHHHH---TTSEEEEEEES
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHh---cCCCEEEEEcC
Confidence 9999999987744444555555553 67999999998
No 191
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.76 E-value=5.6e-18 Score=173.15 Aligned_cols=165 Identities=27% Similarity=0.325 Sum_probs=127.7
Q ss_pred ccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhc
Q 014942 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (415)
..+|+++|+||||||||+|+|+|.+.. +.+.||+|.+...+.+...+.++.++|.||...-...+.++...+.... -.
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q~-VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll-~~ 80 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQK-VGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLL-EG 80 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCce-ecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHh-cC
Confidence 447999999999999999999998876 8999999999999999999999999999998654444444444333222 24
Q ss_pred ccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHHHHHHHhhcCCCccEEEcccCCCCCHHHH
Q 014942 195 NADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDI 274 (415)
Q Consensus 195 ~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gv~eL 274 (415)
.+|++|-|+|+++-..... ...+++ + -+.|+++++|++|...+..+.-..+.+.+..+. |++++||++|.|++++
T Consensus 81 ~~D~ivnVvDAtnLeRnLy-ltlQLl-E--~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LGv-PVv~tvA~~g~G~~~l 155 (653)
T COG0370 81 KPDLIVNVVDATNLERNLY-LTLQLL-E--LGIPMILALNMIDEAKKRGIRIDIEKLSKLLGV-PVVPTVAKRGEGLEEL 155 (653)
T ss_pred CCCEEEEEcccchHHHHHH-HHHHHH-H--cCCCeEEEeccHhhHHhcCCcccHHHHHHHhCC-CEEEEEeecCCCHHHH
Confidence 6899999999987433322 223333 2 589999999999987665554444555555554 9999999999999999
Q ss_pred HHHHHhhCCCCC
Q 014942 275 RDWILTKLPLGP 286 (415)
Q Consensus 275 ~~~L~~~l~~~~ 286 (415)
++.+.+..+...
T Consensus 156 ~~~i~~~~~~~~ 167 (653)
T COG0370 156 KRAIIELAESKT 167 (653)
T ss_pred HHHHHHhccccc
Confidence 999998776644
No 192
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.76 E-value=1.9e-17 Score=173.58 Aligned_cols=157 Identities=17% Similarity=0.175 Sum_probs=112.8
Q ss_pred EEEEEecCCCCHHHHHHHHhCCceee--eeCCCCceEEeEEEEEeC-CCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhh
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQKLSI--VTNKPQTTRHRILGICSG-PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~~~~~--~~~~~~tt~~~~~~~~~~-~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~ 193 (415)
.|+++|++++|||||+++|+|.+... .....+.|.+.....+.. ++..+.||||||+ +. +...+...+
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGh--e~-------fi~~m~~g~ 72 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGH--EK-------FLSNMLAGV 72 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCH--HH-------HHHHHHHHh
Confidence 58999999999999999999754221 223356666554444433 4567899999994 32 344455667
Q ss_pred cccceEEEEecCCCCCchHHHHHHHHhcccCCCCC-EEEEEeCCCCCChhHHHHHHHHHhh----c-CCCccEEEcccCC
Q 014942 194 INADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKDLIKPGEIAKKLEWYEK----F-TDVDEVIPVSAKY 267 (415)
Q Consensus 194 ~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~p-iilV~NK~Dl~~~~~~~~~~~~~~~----~-~~~~~i~~vSA~~ 267 (415)
..+|++++|+|++++...++......+.. .+.| +++|+||+|+.+........+.+.. . ....+++++||++
T Consensus 73 ~~~D~~lLVVda~eg~~~qT~ehl~il~~--lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~t 150 (614)
T PRK10512 73 GGIDHALLVVACDDGVMAQTREHLAILQL--TGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATE 150 (614)
T ss_pred hcCCEEEEEEECCCCCcHHHHHHHHHHHH--cCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCC
Confidence 89999999999998887777766666655 4566 5799999999865444333332222 1 1236899999999
Q ss_pred CCCHHHHHHHHHhhCCC
Q 014942 268 GHGVEDIRDWILTKLPL 284 (415)
Q Consensus 268 g~gv~eL~~~L~~~l~~ 284 (415)
|.|+++|+++|.+..++
T Consensus 151 G~gI~~L~~~L~~~~~~ 167 (614)
T PRK10512 151 GRGIDALREHLLQLPER 167 (614)
T ss_pred CCCCHHHHHHHHHhhcc
Confidence 99999999999876554
No 193
>COG2262 HflX GTPases [General function prediction only]
Probab=99.76 E-value=1.2e-17 Score=161.44 Aligned_cols=164 Identities=30% Similarity=0.334 Sum_probs=120.5
Q ss_pred ccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCC-CeeEEEEeCCCCchhhhhhHhHHHHHHHHhhh
Q 014942 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP-EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~-~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~ 193 (415)
-+.|+++|.+|+|||||+|+|++.... +.+...+|.++....+... +.++.+-||-|+.+.-.+.+-..|. .+....
T Consensus 192 ~p~vaLvGYTNAGKSTL~N~LT~~~~~-~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFk-sTLEE~ 269 (411)
T COG2262 192 IPLVALVGYTNAGKSTLFNALTGADVY-VADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFK-STLEEV 269 (411)
T ss_pred CCeEEEEeeccccHHHHHHHHhccCee-ccccccccccCceeEEEeCCCceEEEecCccCcccCChHHHHHHH-HHHHHh
Confidence 458999999999999999999987754 4667777777666665554 6789999999998765555555553 344456
Q ss_pred cccceEEEEecCCCCC-chHHHHHHHHhcccC-CCCCEEEEEeCCCCCChhHHHHHHHHHhhcCCCccEEEcccCCCCCH
Q 014942 194 INADCIVVLVDACKAP-ERIDEILEEGVGDHK-DKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGV 271 (415)
Q Consensus 194 ~~aD~ii~VvD~~~~~-~~~~~~l~~~l~~~~-~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gv 271 (415)
..||++++|+|++++. ........+.+.... ...|+|+|+||+|+...... ...+....+ ..+++||++|.|+
T Consensus 270 ~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~~---~~~~~~~~~--~~v~iSA~~~~gl 344 (411)
T COG2262 270 KEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEEI---LAELERGSP--NPVFISAKTGEGL 344 (411)
T ss_pred hcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchhh---hhhhhhcCC--CeEEEEeccCcCH
Confidence 7999999999999875 222233334444331 56899999999998865542 222222222 5899999999999
Q ss_pred HHHHHHHHhhCCCC
Q 014942 272 EDIRDWILTKLPLG 285 (415)
Q Consensus 272 ~eL~~~L~~~l~~~ 285 (415)
+.|++.|.+.++..
T Consensus 345 ~~L~~~i~~~l~~~ 358 (411)
T COG2262 345 DLLRERIIELLSGL 358 (411)
T ss_pred HHHHHHHHHHhhhc
Confidence 99999999988753
No 194
>PRK12736 elongation factor Tu; Reviewed
Probab=99.76 E-value=1.2e-17 Score=167.53 Aligned_cols=203 Identities=17% Similarity=0.130 Sum_probs=136.1
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCcee---------------eeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLS---------------IVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI 178 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~---------------~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~ 178 (415)
...+|+++|++++|||||+++|++.... ......+.|.+.....+...+.++.|+||||+ ..
T Consensus 11 ~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh--~~- 87 (394)
T PRK12736 11 PHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGH--AD- 87 (394)
T ss_pred CeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCH--HH-
Confidence 3458999999999999999999863110 01124567777666666667789999999994 22
Q ss_pred hhHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCC-EEEEEeCCCCCChhHHHH-----HHHHHh
Q 014942 179 HMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKDLIKPGEIAK-----KLEWYE 252 (415)
Q Consensus 179 ~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~p-iilV~NK~Dl~~~~~~~~-----~~~~~~ 252 (415)
+...+...+..+|++++|+|+..+....+..++.++.. .+.| +|+|+||+|+.+..+..+ ....+.
T Consensus 88 ------f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~--~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~ 159 (394)
T PRK12736 88 ------YVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQ--VGVPYLVVFLNKVDLVDDEELLELVEMEVRELLS 159 (394)
T ss_pred ------HHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHH--cCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHH
Confidence 33444555688999999999998887777777766666 5788 678999999985433222 112222
Q ss_pred hcC---CCccEEEcccCCCC--------CHHHHHHHHHhhCCCCCCCCCCCCccccCCchhHHHHHHHHHHHHhhcCCCC
Q 014942 253 KFT---DVDEVIPVSAKYGH--------GVEDIRDWILTKLPLGPAYYPKFQDIVSEHPERFFVGEIIREKIFMQYRNEV 321 (415)
Q Consensus 253 ~~~---~~~~i~~vSA~~g~--------gv~eL~~~L~~~l~~~~~~~~~~~~~~t~~~~~~~i~eiireki~~~~~~ei 321 (415)
... ...+++++||++|. ++..|++.|.+.++.... ..+.|.++.+..++ ..+.+
T Consensus 160 ~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp~~~~--------~~~~p~r~~I~~~~-------~~~g~ 224 (394)
T PRK12736 160 EYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIPTPER--------DTDKPFLMPVEDVF-------TITGR 224 (394)
T ss_pred HhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCCCCCC--------CCCCCeEEEEEEEE-------ecCCc
Confidence 211 23589999999983 689999999998874211 11234444333322 13456
Q ss_pred CceEEEEEEEEEecCCCeeEE
Q 014942 322 PYACQVNVVSYKTRPTAKDFI 342 (415)
Q Consensus 322 pys~~v~i~~~~~~~~~~~~i 342 (415)
|.-+...+..|..+.+..+++
T Consensus 225 G~Vv~G~v~~G~l~~gd~v~i 245 (394)
T PRK12736 225 GTVVTGRVERGTVKVGDEVEI 245 (394)
T ss_pred EEEEEEEEeecEEecCCEEEE
Confidence 666777788887776655543
No 195
>CHL00071 tufA elongation factor Tu
Probab=99.76 E-value=1.2e-17 Score=168.16 Aligned_cols=202 Identities=15% Similarity=0.137 Sum_probs=132.6
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceee---------------eeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI---------------VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI 178 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~---------------~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~ 178 (415)
...+|+++|++++|||||+++|++..... .....+.|.+.....+..++.++.|+||||+.
T Consensus 11 ~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~---- 86 (409)
T CHL00071 11 PHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHA---- 86 (409)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChH----
Confidence 34589999999999999999998642211 11236677776666666778899999999942
Q ss_pred hhHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCC-EEEEEeCCCCCChhHHH-----HHHHHHh
Q 014942 179 HMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKDLIKPGEIA-----KKLEWYE 252 (415)
Q Consensus 179 ~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~p-iilV~NK~Dl~~~~~~~-----~~~~~~~ 252 (415)
.+...+...+..+|++++|+|+..+...++..+...+.. .++| +|+|+||+|+.+..... +....+.
T Consensus 87 -----~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~--~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~ 159 (409)
T CHL00071 87 -----DYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQ--VGVPNIVVFLNKEDQVDDEELLELVELEVRELLS 159 (409)
T ss_pred -----HHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHH--cCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHH
Confidence 244555666789999999999998887777777777666 6788 77899999998644322 1222222
Q ss_pred hcC---CCccEEEcccCCCCC------------------HHHHHHHHHhhCCCCCCCCCCCCccccCCchhHHHHHHHHH
Q 014942 253 KFT---DVDEVIPVSAKYGHG------------------VEDIRDWILTKLPLGPAYYPKFQDIVSEHPERFFVGEIIRE 311 (415)
Q Consensus 253 ~~~---~~~~i~~vSA~~g~g------------------v~eL~~~L~~~l~~~~~~~~~~~~~~t~~~~~~~i~eiire 311 (415)
... ...+++++||.+|.+ +..|++.|.+.++. |.. ..+.|.++.+..+.
T Consensus 160 ~~~~~~~~~~ii~~Sa~~g~n~~~~~~~~~~~~~~w~~~~~~ll~~l~~~~~~-p~~-------~~~~p~r~~I~~v~-- 229 (409)
T CHL00071 160 KYDFPGDDIPIVSGSALLALEALTENPKIKRGENKWVDKIYNLMDAVDSYIPT-PER-------DTDKPFLMAIEDVF-- 229 (409)
T ss_pred HhCCCCCcceEEEcchhhcccccccCccccccCCchhhhHHHHHHHHHhhCCC-CCC-------CCCCCEEEEEEEEE--
Confidence 211 136899999999863 56788888776643 111 11234333333221
Q ss_pred HHHhhcCCCCCceEEEEEEEEEecCCCeeE
Q 014942 312 KIFMQYRNEVPYACQVNVVSYKTRPTAKDF 341 (415)
Q Consensus 312 ki~~~~~~eipys~~v~i~~~~~~~~~~~~ 341 (415)
..+.+|.-+...+.+|..+.+..+.
T Consensus 230 -----~~~g~G~Vv~G~V~sG~l~~Gd~v~ 254 (409)
T CHL00071 230 -----SITGRGTVATGRIERGTVKVGDTVE 254 (409)
T ss_pred -----EeCCCeEEEEEEEecCEEeeCCEEE
Confidence 0234554556667777666554443
No 196
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=5.8e-18 Score=149.24 Aligned_cols=157 Identities=18% Similarity=0.213 Sum_probs=115.2
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCceeeee-CCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhc
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVT-NKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~~~~~~-~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (415)
.+|+++|.++||||-|+.++....+..-+ .+.|.........+........||||+| +++++.+ ...|++
T Consensus 15 FKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAG--QERyrAi-------tSaYYr 85 (222)
T KOG0087|consen 15 FKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAG--QERYRAI-------TSAYYR 85 (222)
T ss_pred EEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccc--hhhhccc-------cchhhc
Confidence 47999999999999999999998886432 2233333333444566667889999999 6665544 455689
Q ss_pred ccceEEEEecCCCCC--chHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHHHH-HHHhhcCCCccEEEcccCCCCCH
Q 014942 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKL-EWYEKFTDVDEVIPVSAKYGHGV 271 (415)
Q Consensus 195 ~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~~~-~~~~~~~~~~~i~~vSA~~g~gv 271 (415)
.|-++++|+|++... +....|+.++......++++++|+||+||.+.+.+.... ..+.+. ....++++||..+.||
T Consensus 86 gAvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~-~~l~f~EtSAl~~tNV 164 (222)
T KOG0087|consen 86 GAVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEK-EGLFFLETSALDATNV 164 (222)
T ss_pred ccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHh-cCceEEEecccccccH
Confidence 999999999997654 666677777666555789999999999998744433222 222222 2237899999999999
Q ss_pred HHHHHHHHhhC
Q 014942 272 EDIRDWILTKL 282 (415)
Q Consensus 272 ~eL~~~L~~~l 282 (415)
+..|+.++..+
T Consensus 165 e~aF~~~l~~I 175 (222)
T KOG0087|consen 165 EKAFERVLTEI 175 (222)
T ss_pred HHHHHHHHHHH
Confidence 99998777644
No 197
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.75 E-value=1.1e-17 Score=174.93 Aligned_cols=155 Identities=28% Similarity=0.303 Sum_probs=110.5
Q ss_pred ecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhcccceEEE
Q 014942 122 GKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVV 201 (415)
Q Consensus 122 G~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD~ii~ 201 (415)
|.||||||||+|+|++.+. .+++.+++|.+.....+..++.++.+|||||..........+...+... ....+|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~-~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l-~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQ-TVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYL-LNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCC-eecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHH-hhcCCCEEEE
Confidence 8999999999999999876 4788999999988877777788899999999643211111222222111 1347999999
Q ss_pred EecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHHHHHHHhhcCCCccEEEcccCCCCCHHHHHHHHHhh
Q 014942 202 LVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTK 281 (415)
Q Consensus 202 VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gv~eL~~~L~~~ 281 (415)
|+|+++... ......+. .. .+.|+++|+||+|+.+...+....+.+.+..+ .+++++||++|.|++++++++.+.
T Consensus 79 VvDat~ler-~l~l~~ql-~~--~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~lg-~pvv~tSA~tg~Gi~eL~~~i~~~ 153 (591)
T TIGR00437 79 VVDASNLER-NLYLTLQL-LE--LGIPMILALNLVDEAEKKGIRIDEEKLEERLG-VPVVPTSATEGRGIERLKDAIRKA 153 (591)
T ss_pred EecCCcchh-hHHHHHHH-Hh--cCCCEEEEEehhHHHHhCCChhhHHHHHHHcC-CCEEEEECCCCCCHHHHHHHHHHH
Confidence 999986432 22223332 23 57999999999998654433333344444444 489999999999999999999986
Q ss_pred CC
Q 014942 282 LP 283 (415)
Q Consensus 282 l~ 283 (415)
..
T Consensus 154 ~~ 155 (591)
T TIGR00437 154 IG 155 (591)
T ss_pred hh
Confidence 53
No 198
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.75 E-value=5e-17 Score=150.43 Aligned_cols=153 Identities=19% Similarity=0.232 Sum_probs=104.4
Q ss_pred EEEEEecCCCCHHHHHHHHhCCceeeee-------------CCCCceE------------------------EeEEEEEe
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQKLSIVT-------------NKPQTTR------------------------HRILGICS 159 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~~~~~~~-------------~~~~tt~------------------------~~~~~~~~ 159 (415)
+|+++|+.++|||||+++|....+.... ...|.|. ......+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 5899999999999999999854332100 0001110 00012233
Q ss_pred CCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhh--cccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCC
Q 014942 160 GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG--INADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKD 237 (415)
Q Consensus 160 ~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~--~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~D 237 (415)
..+..+.++||||+ ..+ .+.+...+ ..+|++++|+|+..+....+..+...+.. .++|+++|+||+|
T Consensus 81 ~~~~~i~liDtpG~--~~~-------~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~--~~ip~ivvvNK~D 149 (224)
T cd04165 81 KSSKLVTFIDLAGH--ERY-------LKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALA--LNIPVFVVVTKID 149 (224)
T ss_pred eCCcEEEEEECCCc--HHH-------HHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHH--cCCCEEEEEECcc
Confidence 44668999999995 222 22233334 36899999999998888888777777776 6799999999999
Q ss_pred CCChhHHHHHHHHHhhc----------------------------CCCccEEEcccCCCCCHHHHHHHHHh
Q 014942 238 LIKPGEIAKKLEWYEKF----------------------------TDVDEVIPVSAKYGHGVEDIRDWILT 280 (415)
Q Consensus 238 l~~~~~~~~~~~~~~~~----------------------------~~~~~i~~vSA~~g~gv~eL~~~L~~ 280 (415)
+.+..........+... ....|+|++||.+|.|+++|...|..
T Consensus 150 ~~~~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 150 LAPANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred ccCHHHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 98765554444333221 12348999999999999999988854
No 199
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.75 E-value=5.4e-17 Score=154.09 Aligned_cols=114 Identities=23% Similarity=0.235 Sum_probs=81.0
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCceee-----ee----------CC------CCceEEeEEEEEeCCCeeEEEEeCCCCc
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQKLSI-----VT----------NK------PQTTRHRILGICSGPEYQMILYDTPGII 174 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~~~~-----~~----------~~------~~tt~~~~~~~~~~~~~~l~liDtpG~~ 174 (415)
..|+|+|++|+|||||+++|+.....+ +. +. .+.+.......+.+.+..+.+|||||+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 479999999999999999998532211 10 00 1112222333567788999999999953
Q ss_pred hhhhhhHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCC
Q 014942 175 EKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (415)
Q Consensus 175 ~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~ 240 (415)
.+ ...+..+++.+|++|+|+|++.+.......+++.... .++|+++++||+|+..
T Consensus 83 --df-------~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~--~~~P~iivvNK~D~~~ 137 (267)
T cd04169 83 --DF-------SEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRL--RGIPIITFINKLDREG 137 (267)
T ss_pred --HH-------HHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHh--cCCCEEEEEECCccCC
Confidence 22 2334556789999999999998876666666666655 6899999999999854
No 200
>PRK13351 elongation factor G; Reviewed
Probab=99.75 E-value=1e-17 Score=179.45 Aligned_cols=213 Identities=22% Similarity=0.240 Sum_probs=137.3
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceee-----e------eC------CCCceEEeEEEEEeCCCeeEEEEeCCCCchh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI-----V------TN------KPQTTRHRILGICSGPEYQMILYDTPGIIEK 176 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~-----~------~~------~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~ 176 (415)
+..+|+|+|+.|+|||||+++|+.....+ + .+ ..+.|.......+.+.+..+.+|||||+.+
T Consensus 7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~d- 85 (687)
T PRK13351 7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHID- 85 (687)
T ss_pred cccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHH-
Confidence 34589999999999999999998532110 0 00 122333333344566788999999999632
Q ss_pred hhhhHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChh---HHHHHHHHHh-
Q 014942 177 KIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG---EIAKKLEWYE- 252 (415)
Q Consensus 177 ~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~---~~~~~~~~~~- 252 (415)
+...+..+++.+|++++|+|++.+.......++..+.. .++|+++|+||+|+...+ .+..+...+.
T Consensus 86 --------f~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~--~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~ 155 (687)
T PRK13351 86 --------FTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADR--YGIPRLIFINKMDRVGADLFKVLEDIEERFGK 155 (687)
T ss_pred --------HHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHh--cCCCEEEEEECCCCCCCCHHHHHHHHHHHHCC
Confidence 22345666889999999999998876666666666555 679999999999987421 1111111100
Q ss_pred --------------------------------------------------------------------------------
Q 014942 253 -------------------------------------------------------------------------------- 252 (415)
Q Consensus 253 -------------------------------------------------------------------------------- 252 (415)
T Consensus 156 ~~~~~~~P~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~lle~~l~~~~l~ 235 (687)
T PRK13351 156 RPLPLQLPIGSEDGFEGVVDLITEPELHFSEGDGGSTVEEGPIPEELLEEVEEAREKLIEALAEFDDELLELYLEGEELS 235 (687)
T ss_pred CeEEEEeccccCCceEEEEECccceEEecccCCCCCceEEccCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCCCC
Confidence
Q ss_pred ------------hcCCCccEEEcccCCCCCHHHHHHHHHhhCCCCCCCCCCCCc--------cccCCchhHHHHHHHHHH
Q 014942 253 ------------KFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKFQD--------IVSEHPERFFVGEIIREK 312 (415)
Q Consensus 253 ------------~~~~~~~i~~vSA~~g~gv~eL~~~L~~~l~~~~~~~~~~~~--------~~t~~~~~~~i~eiirek 312 (415)
....+.|++..||++|.|++.|++.|...+|... ..+.... .....+...+++.++ |
T Consensus 236 ~~~l~~~~~~~~~~~~~~PV~~gSA~~~~Gv~~LLd~I~~~lPsP~-~~~~~~~~~~~~~~~~~~~~~~~pl~a~Vf--K 312 (687)
T PRK13351 236 AEQLRAPLREGTRSGHLVPVLFGSALKNIGIEPLLDAVVDYLPSPL-EVPPPRGSKDNGKPVKVDPDPEKPLLALVF--K 312 (687)
T ss_pred HHHHHHHHHHHHHhCCEEEEEecccCcCccHHHHHHHHHHHCCChh-hcccccccCCCCCceeecCCCCCCeEEEEE--E
Confidence 0112457888899999999999999999998742 1111000 000112222233232 2
Q ss_pred HHhhcCCCCCceEEEEEEEEEecCCCeeEE
Q 014942 313 IFMQYRNEVPYACQVNVVSYKTRPTAKDFI 342 (415)
Q Consensus 313 i~~~~~~eipys~~v~i~~~~~~~~~~~~i 342 (415)
+ ...+..|..+.++|.+|+.+++..+++
T Consensus 313 ~--~~d~~~G~i~~~RV~sGtl~~g~~v~~ 340 (687)
T PRK13351 313 V--QYDPYAGKLTYLRVYSGTLRAGSQLYN 340 (687)
T ss_pred e--eecCCCceEEEEEEeEEEEcCCCEEEe
Confidence 2 225667889999999999987766654
No 201
>PLN03127 Elongation factor Tu; Provisional
Probab=99.74 E-value=4.4e-17 Score=165.14 Aligned_cols=201 Identities=16% Similarity=0.136 Sum_probs=132.9
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCC------ceee---------eeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQ------KLSI---------VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI 178 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~------~~~~---------~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~ 178 (415)
...+|+++|++++|||||+++|.+. .... .....+.|.+.....+..++.++.|+||||+..
T Consensus 60 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~--- 136 (447)
T PLN03127 60 PHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHAD--- 136 (447)
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccc---
Confidence 3458999999999999999999732 1111 122367888877777778888999999999632
Q ss_pred hhHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCC-EEEEEeCCCCCChhHHHHHH-HHHhh---
Q 014942 179 HMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKDLIKPGEIAKKL-EWYEK--- 253 (415)
Q Consensus 179 ~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~p-iilV~NK~Dl~~~~~~~~~~-~~~~~--- 253 (415)
+...+...+..+|++++|+|+..+...++..+...+.. .+.| +|+|+||+|+.......+.. ..+..
T Consensus 137 ------f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~--~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~ 208 (447)
T PLN03127 137 ------YVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQ--VGVPSLVVFLNKVDVVDDEELLELVEMELRELLS 208 (447)
T ss_pred ------hHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHH--cCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence 33444445678999999999998887777777777766 6788 57899999998643322221 12211
Q ss_pred c----CCCccEEEcccC---CCCC-------HHHHHHHHHhhCCCCCCCCCCCCccccCCchhHHHHHHHHHHHHhhcCC
Q 014942 254 F----TDVDEVIPVSAK---YGHG-------VEDIRDWILTKLPLGPAYYPKFQDIVSEHPERFFVGEIIREKIFMQYRN 319 (415)
Q Consensus 254 ~----~~~~~i~~vSA~---~g~g-------v~eL~~~L~~~l~~~~~~~~~~~~~~t~~~~~~~i~eiireki~~~~~~ 319 (415)
. ....+++++||. +|.| +..|++.|.+.++.... ..+.|.++.+.++++ -+
T Consensus 209 ~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp~p~r--------~~~~pfr~~I~~vf~-------v~ 273 (447)
T PLN03127 209 FYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIPEPVR--------VLDKPFLMPIEDVFS-------IQ 273 (447)
T ss_pred HhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCCCCCc--------ccccceEeeEEEEEE-------cC
Confidence 1 123578888886 4555 78999999988764211 112344443433321 23
Q ss_pred CCCceEEEEEEEEEecCCCee
Q 014942 320 EVPYACQVNVVSYKTRPTAKD 340 (415)
Q Consensus 320 eipys~~v~i~~~~~~~~~~~ 340 (415)
.+|.-....+..|..+.+..+
T Consensus 274 g~GtVvtG~v~~G~i~~Gd~v 294 (447)
T PLN03127 274 GRGTVATGRVEQGTIKVGEEV 294 (447)
T ss_pred CceEEEEEEEEccEEecCCEE
Confidence 455556667777776655444
No 202
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.74 E-value=1.1e-17 Score=155.79 Aligned_cols=160 Identities=27% Similarity=0.288 Sum_probs=116.1
Q ss_pred EEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCee-EEEEeCCCCchhhhhhHhHHHHHHHHhhhcc
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQ-MILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~-l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (415)
.|++||.||+|||||+|+|...+.. +..++.||..+..+.+.+++.. +.+-|.||++..... +.-+--.....+..
T Consensus 198 dvGLVG~PNAGKSTLL~als~AKpk-Va~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~--nkGlG~~FLrHiER 274 (366)
T KOG1489|consen 198 DVGLVGFPNAGKSTLLNALSRAKPK-VAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHM--NKGLGYKFLRHIER 274 (366)
T ss_pred ccceecCCCCcHHHHHHHhhccCCc-ccccceeeeccccceeeccccceeEeccCccccccccc--cCcccHHHHHHHHh
Confidence 6899999999999999999998874 7899999999988888877765 999999999764322 22122233444789
Q ss_pred cceEEEEecCCCCC----chHHHHHHHHhccc---CCCCCEEEEEeCCCCCChhHHHHHHHHHhhcCCCccEEEcccCCC
Q 014942 196 ADCIVVLVDACKAP----ERIDEILEEGVGDH---KDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYG 268 (415)
Q Consensus 196 aD~ii~VvD~~~~~----~~~~~~l~~~l~~~---~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g 268 (415)
|+.++||+|.+.+. .+....+...+..+ ..+.|.++|+||+|+...+. ..+..+........++++||+++
T Consensus 275 ~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~--~~l~~L~~~lq~~~V~pvsA~~~ 352 (366)
T KOG1489|consen 275 CKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEK--NLLSSLAKRLQNPHVVPVSAKSG 352 (366)
T ss_pred hceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHH--HHHHHHHHHcCCCcEEEeeeccc
Confidence 99999999998762 12222222222221 26789999999999963221 22344444444446999999999
Q ss_pred CCHHHHHHHHHhh
Q 014942 269 HGVEDIRDWILTK 281 (415)
Q Consensus 269 ~gv~eL~~~L~~~ 281 (415)
+|+.+|++.|...
T Consensus 353 egl~~ll~~lr~~ 365 (366)
T KOG1489|consen 353 EGLEELLNGLREL 365 (366)
T ss_pred cchHHHHHHHhhc
Confidence 9999999988754
No 203
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.74 E-value=2e-17 Score=150.29 Aligned_cols=174 Identities=13% Similarity=0.168 Sum_probs=118.3
Q ss_pred EEEEEecCCCCHHHHHHHHhCCceeeee-CCCCceEEeEEEEEeCCCeeEEEEeCCCCchhh--hhhHhHHHHHHHHhhh
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQKLSIVT-NKPQTTRHRILGICSGPEYQMILYDTPGIIEKK--IHMLDSMMMKNVRSAG 193 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~~~~~~~-~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~--~~~l~~~~~~~~~~~~ 193 (415)
+|+++|.+|||||||+|+|+|.+..... ..++.|+..........+.++.++||||+.+.. ...+...+.+.+..+.
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~~ 81 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLSA 81 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhcC
Confidence 6999999999999999999998765433 245667766666566678899999999986532 2234445555555566
Q ss_pred cccceEEEEecCCCCCchHHHHHHHHhccc-C--CCCCEEEEEeCCCCCChhHHHH--------HHHHHhhcCCCccEEE
Q 014942 194 INADCIVVLVDACKAPERIDEILEEGVGDH-K--DKLPILLVLNKKDLIKPGEIAK--------KLEWYEKFTDVDEVIP 262 (415)
Q Consensus 194 ~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~-~--~~~piilV~NK~Dl~~~~~~~~--------~~~~~~~~~~~~~i~~ 262 (415)
..+|++|+|+|+.+ ....+..+.+.++.. . .-.++++|+|++|......+.+ ....+....+...+|.
T Consensus 82 ~g~~~illVi~~~~-~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~~~f~ 160 (196)
T cd01852 82 PGPHAFLLVVPLGR-FTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRYVAFN 160 (196)
T ss_pred CCCEEEEEEEECCC-cCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeEEEEe
Confidence 78999999999887 655555555444432 1 1268899999999875433222 1222222222211221
Q ss_pred c---ccCCCCCHHHHHHHHHhhCCC-CCCCCCC
Q 014942 263 V---SAKYGHGVEDIRDWILTKLPL-GPAYYPK 291 (415)
Q Consensus 263 v---SA~~g~gv~eL~~~L~~~l~~-~~~~~~~ 291 (415)
- |+..+.++.+|++.|.+.+++ ++|.|..
T Consensus 161 ~~~~~~~~~~q~~~Ll~~i~~~~~~~~~~~~~~ 193 (196)
T cd01852 161 NKAKGEEQEQQVKELLAKVESMVKENGGKPYTN 193 (196)
T ss_pred CCCCcchhHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 1 467789999999999999997 7777764
No 204
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.74 E-value=1.4e-17 Score=164.48 Aligned_cols=200 Identities=19% Similarity=0.171 Sum_probs=141.2
Q ss_pred CCCccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEe-CCCeeEEEEeCCCCchhhhhhHhHHHHHHHH
Q 014942 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS-GPEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (415)
Q Consensus 112 ~~~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~-~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~ 190 (415)
..|+|.|.|+|+...|||||+.+|.+..++. ...-|.|.+.-...++ ..+..++|+|||| +..|..|+.++
T Consensus 150 ~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA-~E~GGITQhIGAF~V~~p~G~~iTFLDTPG--HaAF~aMRaRG----- 221 (683)
T KOG1145|consen 150 EPRPPVVTIMGHVDHGKTTLLDALRKSSVAA-GEAGGITQHIGAFTVTLPSGKSITFLDTPG--HAAFSAMRARG----- 221 (683)
T ss_pred CCCCCeEEEeecccCChhhHHHHHhhCceeh-hhcCCccceeceEEEecCCCCEEEEecCCc--HHHHHHHHhcc-----
Confidence 4488999999999999999999999988763 3445566554333222 2567999999999 67788776665
Q ss_pred hhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHHHHHH-------HhhcCCCccEEEc
Q 014942 191 SAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEW-------YEKFTDVDEVIPV 263 (415)
Q Consensus 191 ~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~~~~~-------~~~~~~~~~i~~v 263 (415)
..-+|++++|+.+.++..+++.......+. .+.|+|+++||||.+.... +..... ....++..+++++
T Consensus 222 --A~vtDIvVLVVAadDGVmpQT~EaIkhAk~--A~VpiVvAinKiDkp~a~p-ekv~~eL~~~gi~~E~~GGdVQvipi 296 (683)
T KOG1145|consen 222 --ANVTDIVVLVVAADDGVMPQTLEAIKHAKS--ANVPIVVAINKIDKPGANP-EKVKRELLSQGIVVEDLGGDVQVIPI 296 (683)
T ss_pred --CccccEEEEEEEccCCccHhHHHHHHHHHh--cCCCEEEEEeccCCCCCCH-HHHHHHHHHcCccHHHcCCceeEEEe
Confidence 678999999999999998888777777777 7899999999999875332 222222 2345567799999
Q ss_pred ccCCCCCHHHHHHHHHhhCCCCCCCCCCCCccccCCchhHHHHHHHHHHHHhhcCCCCCceEEEEEEEEEecCC
Q 014942 264 SAKYGHGVEDIRDWILTKLPLGPAYYPKFQDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTRPT 337 (415)
Q Consensus 264 SA~~g~gv~eL~~~L~~~l~~~~~~~~~~~~~~t~~~~~~~i~eiireki~~~~~~eipys~~v~i~~~~~~~~ 337 (415)
||++|.|++.|.+.+.-.+.-- + +...|....-..++. ..+.+.+|..+.+.+-.++.+.+
T Consensus 297 SAl~g~nl~~L~eaill~Ae~m--------d-LkA~p~g~~eg~VIE----S~vdkg~G~~aT~iVkrGTLkKG 357 (683)
T KOG1145|consen 297 SALTGENLDLLEEAILLLAEVM--------D-LKADPKGPAEGWVIE----SSVDKGRGPVATVIVKRGTLKKG 357 (683)
T ss_pred ecccCCChHHHHHHHHHHHHHh--------h-cccCCCCCceEEEEE----eeecCCccceeEEEEeccccccc
Confidence 9999999999999887543210 0 000111110011111 12367778888888888887754
No 205
>PRK12735 elongation factor Tu; Reviewed
Probab=99.73 E-value=5.7e-17 Score=162.67 Aligned_cols=202 Identities=16% Similarity=0.123 Sum_probs=130.3
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCC-------ceee--------eeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQ-------KLSI--------VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI 178 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~-------~~~~--------~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~ 178 (415)
...+|+++|++++|||||+++|++. .+.. .....+.|.+.....+..++.++.|+||||+ .
T Consensus 11 ~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh--~-- 86 (396)
T PRK12735 11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGH--A-- 86 (396)
T ss_pred CeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCH--H--
Confidence 3458999999999999999999862 1100 1124566776655556667789999999995 2
Q ss_pred hhHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEE-EEEeCCCCCChhHHH-----HHHHHHh
Q 014942 179 HMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPIL-LVLNKKDLIKPGEIA-----KKLEWYE 252 (415)
Q Consensus 179 ~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~pii-lV~NK~Dl~~~~~~~-----~~~~~~~ 252 (415)
.+...+...+..+|++++|+|+..+.......++..+.. .++|.+ +|+||+|+....... +....+.
T Consensus 87 -----~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~--~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~ 159 (396)
T PRK12735 87 -----DYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQ--VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLS 159 (396)
T ss_pred -----HHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHH--cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHH
Confidence 234555666789999999999998776666556665555 578865 579999997533221 1222222
Q ss_pred hcC---CCccEEEcccCCCC----------CHHHHHHHHHhhCCCCCCCCCCCCccccCCchhHHHHHHHHHHHHhhcCC
Q 014942 253 KFT---DVDEVIPVSAKYGH----------GVEDIRDWILTKLPLGPAYYPKFQDIVSEHPERFFVGEIIREKIFMQYRN 319 (415)
Q Consensus 253 ~~~---~~~~i~~vSA~~g~----------gv~eL~~~L~~~l~~~~~~~~~~~~~~t~~~~~~~i~eiireki~~~~~~ 319 (415)
... ...+++++||++|. |+..|++.|.+.++.... ..+.|.++.+.+++. -+
T Consensus 160 ~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~~p~~--------~~~~p~r~~I~~~f~-------v~ 224 (396)
T PRK12735 160 KYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIPEPER--------AIDKPFLMPIEDVFS-------IS 224 (396)
T ss_pred HcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCCCCCc--------cCCCCeEEEEEEEEe-------cC
Confidence 221 23689999999984 788999999988763211 112343333332220 13
Q ss_pred CCCceEEEEEEEEEecCCCeeE
Q 014942 320 EVPYACQVNVVSYKTRPTAKDF 341 (415)
Q Consensus 320 eipys~~v~i~~~~~~~~~~~~ 341 (415)
.+|-.....+..|..+.+..+.
T Consensus 225 g~Gtvv~G~v~~G~i~~gd~v~ 246 (396)
T PRK12735 225 GRGTVVTGRVERGIVKVGDEVE 246 (396)
T ss_pred CceEEEEEEEEecEEeCCCEEE
Confidence 3444455667777766654443
No 206
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.73 E-value=5.3e-17 Score=137.59 Aligned_cols=139 Identities=24% Similarity=0.380 Sum_probs=98.4
Q ss_pred EEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhccc
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~a 196 (415)
+|+++|++|+|||||+++|.+.... ...|... .. .=.+|||||-.-+ +..+.........+|
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~~-----~~KTq~i-----~~---~~~~IDTPGEyiE-----~~~~y~aLi~ta~da 64 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEIR-----YKKTQAI-----EY---YDNTIDTPGEYIE-----NPRFYHALIVTAQDA 64 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCCC-----cCcccee-----Ee---cccEEECChhhee-----CHHHHHHHHHHHhhC
Confidence 7999999999999999999997653 1112111 11 1145999993211 223445555667899
Q ss_pred ceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCC-ChhHHHHHHHHHhhcCCCccEEEcccCCCCCHHHHH
Q 014942 197 DCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI-KPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIR 275 (415)
Q Consensus 197 D~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~-~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gv~eL~ 275 (415)
|+|++|.|++.+.....-.+... .++|+|-|+||+|+. +...++...+++.. .+...+|++||.+|+|+++|.
T Consensus 65 d~V~ll~dat~~~~~~pP~fa~~-----f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~-aG~~~if~vS~~~~eGi~eL~ 138 (143)
T PF10662_consen 65 DVVLLLQDATEPRSVFPPGFASM-----FNKPVIGVITKIDLPSDDANIERAKKWLKN-AGVKEIFEVSAVTGEGIEELK 138 (143)
T ss_pred CEEEEEecCCCCCccCCchhhcc-----cCCCEEEEEECccCccchhhHHHHHHHHHH-cCCCCeEEEECCCCcCHHHHH
Confidence 99999999998654433334333 357999999999998 44555555555544 355678999999999999999
Q ss_pred HHHH
Q 014942 276 DWIL 279 (415)
Q Consensus 276 ~~L~ 279 (415)
++|.
T Consensus 139 ~~L~ 142 (143)
T PF10662_consen 139 DYLE 142 (143)
T ss_pred HHHh
Confidence 9985
No 207
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.73 E-value=9e-17 Score=155.65 Aligned_cols=168 Identities=21% Similarity=0.229 Sum_probs=114.9
Q ss_pred EEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeC------------------------CCeeEEEEeCCCC
Q 014942 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG------------------------PEYQMILYDTPGI 173 (415)
Q Consensus 118 V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~------------------------~~~~l~liDtpG~ 173 (415)
|+++|.||||||||+|+|++... .+.++|.+|.++..+.... ....+.+|||||+
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~-~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGl 79 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADV-EIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGL 79 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCC-cccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCC
Confidence 58999999999999999999876 4788899998877654321 2357999999998
Q ss_pred chhhhhhHhHHHHHHHHhhhcccceEEEEecCCCC---------------CchH-------HHH----------------
Q 014942 174 IEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKA---------------PERI-------DEI---------------- 215 (415)
Q Consensus 174 ~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~---------------~~~~-------~~~---------------- 215 (415)
..... ....+...+...+++||++++|+|++.. ..+. ..+
T Consensus 80 v~ga~--~~~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~~~~ 157 (318)
T cd01899 80 VPGAH--EGKGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIVRKA 157 (318)
T ss_pred CCCcc--chhhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 53221 1122334455668999999999999731 0000 000
Q ss_pred ------------------------HHHHhcc----------------------cCCCCCEEEEEeCCCCCChhHHHHHHH
Q 014942 216 ------------------------LEEGVGD----------------------HKDKLPILLVLNKKDLIKPGEIAKKLE 249 (415)
Q Consensus 216 ------------------------l~~~l~~----------------------~~~~~piilV~NK~Dl~~~~~~~~~~~ 249 (415)
+...+.. +...+|+|+|+||+|+........
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~llt~KPvI~VlNK~Dl~~~~~~~~--- 234 (318)
T cd01899 158 DAEKTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLARALRKRSKPMVIAANKADIPDAENNIS--- 234 (318)
T ss_pred hcCCccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEEEHHHccChHHHHH---
Confidence 0000000 013579999999999865444332
Q ss_pred HHhhcCCCccEEEcccCCCCCHHHHHH-HHHhhCCCCCCCCCC
Q 014942 250 WYEKFTDVDEVIPVSAKYGHGVEDIRD-WILTKLPLGPAYYPK 291 (415)
Q Consensus 250 ~~~~~~~~~~i~~vSA~~g~gv~eL~~-~L~~~l~~~~~~~~~ 291 (415)
.+.......+++++||+.+.|+.+|.+ .+.+++|++|+.-..
T Consensus 235 ~l~~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe~~~f~~~ 277 (318)
T cd01899 235 KLRLKYPDEIVVPTSAEAELALRRAAKQGLIKYDPGDSDFEIT 277 (318)
T ss_pred HHHhhCCCCeEEEEeCcccccHHHHHHhhHHHhCCCCCCceec
Confidence 222233456899999999999999998 699999998865433
No 208
>PRK00049 elongation factor Tu; Reviewed
Probab=99.73 E-value=9e-17 Score=161.14 Aligned_cols=203 Identities=17% Similarity=0.133 Sum_probs=135.6
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCcee---------------eeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLS---------------IVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI 178 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~---------------~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~ 178 (415)
...+|+++|++++|||||+++|++.... ......+.|.+.....+..++.++.|+||||+.
T Consensus 11 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~---- 86 (396)
T PRK00049 11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHA---- 86 (396)
T ss_pred CEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHH----
Confidence 4458999999999999999999863110 011245777776666666778899999999952
Q ss_pred hhHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEE-EEEeCCCCCChhHHH-----HHHHHHh
Q 014942 179 HMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPIL-LVLNKKDLIKPGEIA-----KKLEWYE 252 (415)
Q Consensus 179 ~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~pii-lV~NK~Dl~~~~~~~-----~~~~~~~ 252 (415)
.+...+...+..+|++++|+|+..+....+..++..+.. .+.|.+ +++||+|+.+..... +....+.
T Consensus 87 -----~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~--~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~ 159 (396)
T PRK00049 87 -----DYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQ--VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLS 159 (396)
T ss_pred -----HHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHH--cCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHH
Confidence 244555666789999999999998887777777777666 678976 589999998533221 1222222
Q ss_pred hc---CCCccEEEcccCCCC----------CHHHHHHHHHhhCCCCCCCCCCCCccccCCchhHHHHHHHHHHHHhhcCC
Q 014942 253 KF---TDVDEVIPVSAKYGH----------GVEDIRDWILTKLPLGPAYYPKFQDIVSEHPERFFVGEIIREKIFMQYRN 319 (415)
Q Consensus 253 ~~---~~~~~i~~vSA~~g~----------gv~eL~~~L~~~l~~~~~~~~~~~~~~t~~~~~~~i~eiireki~~~~~~ 319 (415)
.. ....+++++||++|. |+..|++.|.+.++. |. ...+.|.++.+.++++ -+
T Consensus 160 ~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~~-p~-------~~~~~p~r~~I~~~f~-------v~ 224 (396)
T PRK00049 160 KYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIPT-PE-------RAIDKPFLMPIEDVFS-------IS 224 (396)
T ss_pred hcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCCC-CC-------CCCCCCeEEEEEEEEe-------eC
Confidence 21 123689999999875 678999999987763 21 1123444443333220 23
Q ss_pred CCCceEEEEEEEEEecCCCeeEE
Q 014942 320 EVPYACQVNVVSYKTRPTAKDFI 342 (415)
Q Consensus 320 eipys~~v~i~~~~~~~~~~~~i 342 (415)
.+|.-....+..|..+.+..+.+
T Consensus 225 g~G~Vv~G~v~~G~i~~gd~v~i 247 (396)
T PRK00049 225 GRGTVVTGRVERGIIKVGEEVEI 247 (396)
T ss_pred CceEEEEEEEeeeEEecCCEEEE
Confidence 45555666777787776655433
No 209
>PRK09866 hypothetical protein; Provisional
Probab=99.73 E-value=1e-16 Score=163.21 Aligned_cols=115 Identities=20% Similarity=0.257 Sum_probs=82.8
Q ss_pred eeEEEEeCCCCchhhhhhHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCCh-
Q 014942 163 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP- 241 (415)
Q Consensus 163 ~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~- 241 (415)
.+++|+||||+.......+...+.+ .+..+|+|+||+|+.......+..+.+.++......|+++|+||+|+.+.
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~e----qL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl~dre 305 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQ----QLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQQDRN 305 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHH----HHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcccCCCcc
Confidence 4789999999954223334444443 58999999999999887766677777777663223599999999999752
Q ss_pred ----hHHHHHHHHH--hhcCCCccEEEcccCCCCCHHHHHHHHHhh
Q 014942 242 ----GEIAKKLEWY--EKFTDVDEVIPVSAKYGHGVEDIRDWILTK 281 (415)
Q Consensus 242 ----~~~~~~~~~~--~~~~~~~~i~~vSA~~g~gv~eL~~~L~~~ 281 (415)
..+....... .....+..++|+||++|.|++.|++.|...
T Consensus 306 eddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~~ 351 (741)
T PRK09866 306 SDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELANN 351 (741)
T ss_pred cchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHhC
Confidence 2233332222 223346789999999999999999999874
No 210
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.73 E-value=1.1e-16 Score=160.78 Aligned_cols=203 Identities=15% Similarity=0.125 Sum_probs=129.9
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCC------cee----e-----eeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQ------KLS----I-----VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI 178 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~------~~~----~-----~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~ 178 (415)
+..+|+++|++++|||||+++|++. ... . .....+.|.+.....+...+.++.||||||+ ..
T Consensus 11 ~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh--~~- 87 (394)
T TIGR00485 11 PHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGH--AD- 87 (394)
T ss_pred ceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCch--HH-
Confidence 4558999999999999999999843 100 0 1123677777666666667788999999995 32
Q ss_pred hhHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEE-EEEeCCCCCChhHHH-----HHHHHHh
Q 014942 179 HMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPIL-LVLNKKDLIKPGEIA-----KKLEWYE 252 (415)
Q Consensus 179 ~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~pii-lV~NK~Dl~~~~~~~-----~~~~~~~ 252 (415)
+...+...+..+|++++|+|+..+....+...+..+.. .+.|.+ +|+||+|+.+..... +....+.
T Consensus 88 ------f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~--~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~ 159 (394)
T TIGR00485 88 ------YVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQ--VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLS 159 (394)
T ss_pred ------HHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHH--cCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHH
Confidence 23344455678999999999998876666666666655 567765 689999998644322 1222222
Q ss_pred hcC---CCccEEEcccCCCC--------CHHHHHHHHHhhCCCCCCCCCCCCccccCCchhHHHHHHHHHHHHhhcCCCC
Q 014942 253 KFT---DVDEVIPVSAKYGH--------GVEDIRDWILTKLPLGPAYYPKFQDIVSEHPERFFVGEIIREKIFMQYRNEV 321 (415)
Q Consensus 253 ~~~---~~~~i~~vSA~~g~--------gv~eL~~~L~~~l~~~~~~~~~~~~~~t~~~~~~~i~eiireki~~~~~~ei 321 (415)
... ...+++++||++|. ++..|++.|.+.++.... ..+.|.++.+..+. ..+.+
T Consensus 160 ~~~~~~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~~~~~~~~--------~~~~p~r~~V~~vf-------~~~g~ 224 (394)
T TIGR00485 160 EYDFPGDDTPIIRGSALKALEGDAEWEAKILELMDAVDEYIPTPER--------ETDKPFLMPIEDVF-------SITGR 224 (394)
T ss_pred hcCCCccCccEEECccccccccCCchhHhHHHHHHHHHhcCCCCCC--------CCCCCeEEEEEEEE-------eeCCc
Confidence 221 12689999999875 456777777766543111 12234443333222 12445
Q ss_pred CceEEEEEEEEEecCCCeeEE
Q 014942 322 PYACQVNVVSYKTRPTAKDFI 342 (415)
Q Consensus 322 pys~~v~i~~~~~~~~~~~~i 342 (415)
|--+...+..|..+.+..+.+
T Consensus 225 G~Vv~G~v~~G~l~~gd~v~i 245 (394)
T TIGR00485 225 GTVVTGRVERGIVKVGEEVEI 245 (394)
T ss_pred eEEEEEEEEeeEEeCCCEEEE
Confidence 555667778887776654443
No 211
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.73 E-value=1e-16 Score=167.32 Aligned_cols=156 Identities=24% Similarity=0.296 Sum_probs=103.3
Q ss_pred CCCccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCC-ceEEeEEEEEeCC------------------CeeEEEEeCCC
Q 014942 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQ-TTRHRILGICSGP------------------EYQMILYDTPG 172 (415)
Q Consensus 112 ~~~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~-tt~~~~~~~~~~~------------------~~~l~liDtpG 172 (415)
..|+|.|+++|++|+|||||+|+|.+..+. ...++ .|++.-....... -..+.||||||
T Consensus 3 ~~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~--~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG 80 (586)
T PRK04004 3 KLRQPIVVVLGHVDHGKTTLLDKIRGTAVA--AKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPG 80 (586)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCcccc--cCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCC
Confidence 358899999999999999999999887643 22322 2222111111000 01378999999
Q ss_pred CchhhhhhHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChhH---------
Q 014942 173 IIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE--------- 243 (415)
Q Consensus 173 ~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~--------- 243 (415)
+ ..+..+. ...+..+|++++|+|++++...........+.. .+.|+++|+||+|+.....
T Consensus 81 ~--e~f~~~~-------~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~--~~vpiIvviNK~D~~~~~~~~~~~~~~e 149 (586)
T PRK04004 81 H--EAFTNLR-------KRGGALADIAILVVDINEGFQPQTIEAINILKR--RKTPFVVAANKIDRIPGWKSTEDAPFLE 149 (586)
T ss_pred h--HHHHHHH-------HHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHH--cCCCEEEEEECcCCchhhhhhcCchHHH
Confidence 4 4444332 234678999999999998776666555555555 6899999999999852110
Q ss_pred --------HH--------HHHHHHh-------------hcCCCccEEEcccCCCCCHHHHHHHHHh
Q 014942 244 --------IA--------KKLEWYE-------------KFTDVDEVIPVSAKYGHGVEDIRDWILT 280 (415)
Q Consensus 244 --------~~--------~~~~~~~-------------~~~~~~~i~~vSA~~g~gv~eL~~~L~~ 280 (415)
+. +....+. ...+..+++++||++|.|+++|++.+..
T Consensus 150 ~~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~ 215 (586)
T PRK04004 150 SIEKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAG 215 (586)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHH
Confidence 00 0111111 1123457999999999999999988864
No 212
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.72 E-value=1.9e-16 Score=156.72 Aligned_cols=198 Identities=25% Similarity=0.235 Sum_probs=135.9
Q ss_pred ccEEEEEecCCCCHHHHHHHHhCCceee--------------eeCCCCceEEeEEEEEeC---CCeeEEEEeCCCCchhh
Q 014942 115 SGYVAVLGKPNVGKSTLANQMIGQKLSI--------------VTNKPQTTRHRILGICSG---PEYQMILYDTPGIIEKK 177 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~~~~~~~--------------~~~~~~tt~~~~~~~~~~---~~~~l~liDtpG~~~~~ 177 (415)
-.+++|+-+...|||||..+|+...-.+ +....|.|.......+.+ ..+-+++|||||+.+..
T Consensus 60 iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDFs 139 (650)
T KOG0462|consen 60 IRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDFS 139 (650)
T ss_pred ccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccccc
Confidence 3479999999999999999997432211 223334444433333333 34789999999976533
Q ss_pred hhhHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCCh--hHHHHHHHHHhhcC
Q 014942 178 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP--GEIAKKLEWYEKFT 255 (415)
Q Consensus 178 ~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~--~~~~~~~~~~~~~~ 255 (415)
. .+.+.+..||++|+|||++++.+.++..-..+.-+ .+..+|.|+||+|++.. +.+......+-..
T Consensus 140 ~---------EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe--~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~- 207 (650)
T KOG0462|consen 140 G---------EVSRSLAACDGALLVVDASQGVQAQTVANFYLAFE--AGLAIIPVLNKIDLPSADPERVENQLFELFDI- 207 (650)
T ss_pred c---------eehehhhhcCceEEEEEcCcCchHHHHHHHHHHHH--cCCeEEEeeeccCCCCCCHHHHHHHHHHHhcC-
Confidence 2 23444778999999999999998776544433333 68899999999999853 3333333322222
Q ss_pred CCccEEEcccCCCCCHHHHHHHHHhhCCCCCCCCCCCCccccCCchhHHHHHHHHHHHHhhcCCCCCceEEEEEEEEEec
Q 014942 256 DVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKFQDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTR 335 (415)
Q Consensus 256 ~~~~i~~vSA~~g~gv~eL~~~L~~~l~~~~~~~~~~~~~~t~~~~~~~i~eiireki~~~~~~eipys~~v~i~~~~~~ 335 (415)
...+++.+||++|.|+.+++++|++.+|+.. ...+.|.+.++-. ..+++..|-...+++..|..+
T Consensus 208 ~~~~~i~vSAK~G~~v~~lL~AII~rVPpP~--------~~~d~plr~Lifd-------s~yD~y~G~I~~vrv~~G~vr 272 (650)
T KOG0462|consen 208 PPAEVIYVSAKTGLNVEELLEAIIRRVPPPK--------GIRDAPLRMLIFD-------SEYDEYRGVIALVRVVDGVVR 272 (650)
T ss_pred CccceEEEEeccCccHHHHHHHHHhhCCCCC--------CCCCcchHHHhhh-------hhhhhhcceEEEEEEeeeeee
Confidence 2347999999999999999999999999632 2234566654433 345677788888899988877
Q ss_pred CCCe
Q 014942 336 PTAK 339 (415)
Q Consensus 336 ~~~~ 339 (415)
.++.
T Consensus 273 kGdk 276 (650)
T KOG0462|consen 273 KGDK 276 (650)
T ss_pred cCCE
Confidence 5543
No 213
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=4.3e-17 Score=135.40 Aligned_cols=157 Identities=20% Similarity=0.216 Sum_probs=111.6
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCceeee-eCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhc
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQKLSIV-TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~~~~~-~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (415)
.+|+++|..|||||.|+.++...-+... +...|.........+..+..++.+|||+| +++++++ +.++++
T Consensus 8 fkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtag--qerfrsi-------tqsyyr 78 (213)
T KOG0095|consen 8 FKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAG--QERFRSI-------TQSYYR 78 (213)
T ss_pred EEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccc--hHHHHHH-------HHHHhh
Confidence 3899999999999999999987766421 11222222222334566778999999999 6776655 556689
Q ss_pred ccceEEEEecCCCCC--chHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHHHH-HHHhhcCCCccEEEcccCCCCCH
Q 014942 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKL-EWYEKFTDVDEVIPVSAKYGHGV 271 (415)
Q Consensus 195 ~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~~~-~~~~~~~~~~~i~~vSA~~g~gv 271 (415)
.|+++|+|+|.+-.+ .-+.+|+.++-.....+.-.|+|+||+|+.+.+++.... +.+... ...-++++||+...||
T Consensus 79 sahalilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~-qdmyfletsakea~nv 157 (213)
T KOG0095|consen 79 SAHALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEA-QDMYFLETSAKEADNV 157 (213)
T ss_pred hcceEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHh-hhhhhhhhcccchhhH
Confidence 999999999987433 455667666544433455678999999998876665443 333332 3335789999999999
Q ss_pred HHHHHHHHhhC
Q 014942 272 EDIRDWILTKL 282 (415)
Q Consensus 272 ~eL~~~L~~~l 282 (415)
+.||..+...+
T Consensus 158 e~lf~~~a~rl 168 (213)
T KOG0095|consen 158 EKLFLDLACRL 168 (213)
T ss_pred HHHHHHHHHHH
Confidence 99999887654
No 214
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.72 E-value=3.8e-17 Score=135.62 Aligned_cols=154 Identities=20% Similarity=0.251 Sum_probs=110.8
Q ss_pred EEEEEecCCCCHHHHHHHHhCCceeeeeCCCCce-EEeEEE--EEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhh
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTT-RHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt-~~~~~~--~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~ 193 (415)
+.+|+|.||||||||+-++....++ ..+..|+ .+.... .+.+....+.||||+| ++.|+.+ +..++
T Consensus 10 kllIigDsgVGKssLl~rF~ddtFs--~sYitTiGvDfkirTv~i~G~~VkLqIwDtAG--qErFrti-------tstyy 78 (198)
T KOG0079|consen 10 KLLIIGDSGVGKSSLLLRFADDTFS--GSYITTIGVDFKIRTVDINGDRVKLQIWDTAG--QERFRTI-------TSTYY 78 (198)
T ss_pred HHHeecCCcccHHHHHHHHhhcccc--cceEEEeeeeEEEEEeecCCcEEEEEEeeccc--HHHHHHH-------HHHHc
Confidence 6799999999999999999988764 2222222 122222 2445667899999999 6666554 44558
Q ss_pred cccceEEEEecCCCCC--chHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHHH-HHHHhhcCCCccEEEcccCCCCC
Q 014942 194 INADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKK-LEWYEKFTDVDEVIPVSAKYGHG 270 (415)
Q Consensus 194 ~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~~-~~~~~~~~~~~~i~~vSA~~g~g 270 (415)
+..+++++|+|.+++. .....|+.+.... ....|-++|+||+|....+.+... ...+....+ ..+|++||+...|
T Consensus 79 rgthgv~vVYDVTn~ESF~Nv~rWLeei~~n-cdsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mg-ie~FETSaKe~~N 156 (198)
T KOG0079|consen 79 RGTHGVIVVYDVTNGESFNNVKRWLEEIRNN-CDSVPKVLVGNKNDDPERRVVDTEDARAFALQMG-IELFETSAKENEN 156 (198)
T ss_pred cCCceEEEEEECcchhhhHhHHHHHHHHHhc-CccccceecccCCCCccceeeehHHHHHHHHhcC-chheehhhhhccc
Confidence 9999999999998765 4555666655443 368899999999999876544322 223333333 4789999999999
Q ss_pred HHHHHHHHHhhCC
Q 014942 271 VEDIRDWILTKLP 283 (415)
Q Consensus 271 v~eL~~~L~~~l~ 283 (415)
++..|..|.+++.
T Consensus 157 vE~mF~cit~qvl 169 (198)
T KOG0079|consen 157 VEAMFHCITKQVL 169 (198)
T ss_pred chHHHHHHHHHHH
Confidence 9999999887653
No 215
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=8.3e-17 Score=133.50 Aligned_cols=156 Identities=13% Similarity=0.203 Sum_probs=108.2
Q ss_pred EEEEEecCCCCHHHHHHHHhCCceeee-eCCCCceEEeEEEEEe-CCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhc
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQKLSIV-TNKPQTTRHRILGICS-GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~~~~~~-~~~~~tt~~~~~~~~~-~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (415)
++.|+|.+.||||||+-+.++..+.+. -...|.. ..+..++. .....+.+|||+| ++.++.+ +..+++
T Consensus 23 KlliiGnssvGKTSfl~ry~ddSFt~afvsTvGid-FKvKTvyr~~kRiklQiwDTag--qEryrti-------TTayyR 92 (193)
T KOG0093|consen 23 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGID-FKVKTVYRSDKRIKLQIWDTAG--QERYRTI-------TTAYYR 92 (193)
T ss_pred eEEEEccCCccchhhhHHhhccccccceeeeeeee-EEEeEeeecccEEEEEEEeccc--chhhhHH-------HHHHhh
Confidence 899999999999999999999877531 0111111 11122232 3456899999999 4544433 455689
Q ss_pred ccceEEEEecCCCCC--chHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHH-HHHHHHhhcCCCccEEEcccCCCCCH
Q 014942 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYGHGV 271 (415)
Q Consensus 195 ~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~i~~vSA~~g~gv 271 (415)
+++++|+++|+++.. .....|+.......-.+.|+|+|+||||+...+.+. +....+....++ .+|++||+.+.||
T Consensus 93 gamgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGf-efFEtSaK~NinV 171 (193)
T KOG0093|consen 93 GAMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGF-EFFETSAKENINV 171 (193)
T ss_pred ccceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhCh-HHhhhcccccccH
Confidence 999999999998643 334444443332223689999999999998765443 222334444565 7999999999999
Q ss_pred HHHHHHHHhhCC
Q 014942 272 EDIRDWILTKLP 283 (415)
Q Consensus 272 ~eL~~~L~~~l~ 283 (415)
.++|+.|+..+-
T Consensus 172 k~~Fe~lv~~Ic 183 (193)
T KOG0093|consen 172 KQVFERLVDIIC 183 (193)
T ss_pred HHHHHHHHHHHH
Confidence 999999987664
No 216
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.72 E-value=6.3e-17 Score=164.11 Aligned_cols=150 Identities=21% Similarity=0.219 Sum_probs=99.9
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceee------------------------------eeCCCCceEEeEEEEEeCCCe
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI------------------------------VTNKPQTTRHRILGICSGPEY 163 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~------------------------------~~~~~~tt~~~~~~~~~~~~~ 163 (415)
...+|+++|++++|||||+++|+.....+ .....+.|.+.....+..++.
T Consensus 6 ~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~~ 85 (426)
T TIGR00483 6 EHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDKY 85 (426)
T ss_pred ceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCCe
Confidence 34589999999999999999998422110 012346777777777888889
Q ss_pred eEEEEeCCCCchhhhhhHhHHHHHHHHhhhcccceEEEEecCCCC---CchHHHHHHHHhcccCCCCCEEEEEeCCCCCC
Q 014942 164 QMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKA---PERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (415)
Q Consensus 164 ~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~---~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~ 240 (415)
.+.||||||+ .. +...+...+..+|++++|+|++++ ..........+.+.. ...|+++|+||+|+..
T Consensus 86 ~i~iiDtpGh--~~-------f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~-~~~~iIVviNK~Dl~~ 155 (426)
T TIGR00483 86 EVTIVDCPGH--RD-------FIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTL-GINQLIVAINKMDSVN 155 (426)
T ss_pred EEEEEECCCH--HH-------HHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHc-CCCeEEEEEEChhccC
Confidence 9999999994 32 233445557899999999999887 333332222233331 2357999999999974
Q ss_pred --hhHHH----HHHHHHhhcC---CCccEEEcccCCCCCHHH
Q 014942 241 --PGEIA----KKLEWYEKFT---DVDEVIPVSAKYGHGVED 273 (415)
Q Consensus 241 --~~~~~----~~~~~~~~~~---~~~~i~~vSA~~g~gv~e 273 (415)
..... +....+.... ...+++++||++|.|+.+
T Consensus 156 ~~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~ 197 (426)
T TIGR00483 156 YDEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIK 197 (426)
T ss_pred ccHHHHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccc
Confidence 22222 1222222221 235799999999999986
No 217
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=9.4e-17 Score=133.92 Aligned_cols=156 Identities=19% Similarity=0.181 Sum_probs=110.3
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCceee-eeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhc
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQKLSI-VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~~~~-~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (415)
.+++++|+.|+|||.|+.+++..++.. ++...|.........+.....++.+|||+| ++.|++. +++|++
T Consensus 10 fKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAG--QErFRSV-------tRsYYR 80 (214)
T KOG0086|consen 10 FKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAG--QERFRSV-------TRSYYR 80 (214)
T ss_pred heeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeeccc--HHHHHHH-------HHHHhc
Confidence 379999999999999999999887752 222222222222222344567899999999 6666554 667799
Q ss_pred ccceEEEEecCCCCC--chHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHHHH-HHHhhcCCCccEEEcccCCCCCH
Q 014942 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKL-EWYEKFTDVDEVIPVSAKYGHGV 271 (415)
Q Consensus 195 ~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~~~-~~~~~~~~~~~i~~vSA~~g~gv 271 (415)
.|-.+++|+|+++.. ..+..|+........+++-+++++||.||...+++.-.. ..+.+... ..+.++||++|+||
T Consensus 81 GAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEne-l~flETSa~TGeNV 159 (214)
T KOG0086|consen 81 GAAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENE-LMFLETSALTGENV 159 (214)
T ss_pred cccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccc-eeeeeecccccccH
Confidence 999999999998543 666777766544444778899999999998776654332 22333222 26789999999999
Q ss_pred HHHHHHHHhh
Q 014942 272 EDIRDWILTK 281 (415)
Q Consensus 272 ~eL~~~L~~~ 281 (415)
++.|-...+.
T Consensus 160 EEaFl~c~~t 169 (214)
T KOG0086|consen 160 EEAFLKCART 169 (214)
T ss_pred HHHHHHHHHH
Confidence 9987655543
No 218
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.72 E-value=1.3e-16 Score=135.87 Aligned_cols=151 Identities=23% Similarity=0.225 Sum_probs=96.4
Q ss_pred EEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEE--EEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhcccc
Q 014942 120 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINAD 197 (415)
Q Consensus 120 ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~--~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD 197 (415)
++|++|+|||||+|+|.+..... .....+....... .....+..+.+|||||... ... .....+..+|
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~--~~~-------~~~~~~~~~~ 70 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVP-EEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQER--FRS-------LRRLYYRGAD 70 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCC-cccccchhheeeEEEEECCEEEEEEEEecCChHH--HHh-------HHHHHhcCCC
Confidence 58999999999999999877521 1111111222222 2223366899999999532 111 1244578999
Q ss_pred eEEEEecCCCCCchHH--HH-HHHHhcccCCCCCEEEEEeCCCCCChhHHHHHH-HHHhhcCCCccEEEcccCCCCCHHH
Q 014942 198 CIVVLVDACKAPERID--EI-LEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKL-EWYEKFTDVDEVIPVSAKYGHGVED 273 (415)
Q Consensus 198 ~ii~VvD~~~~~~~~~--~~-l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~~~-~~~~~~~~~~~i~~vSA~~g~gv~e 273 (415)
++++|+|++++..... .+ ..........+.|+++|+||+|+.......... ..........+++++||.++.|+.+
T Consensus 71 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~ 150 (157)
T cd00882 71 GIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEE 150 (157)
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHH
Confidence 9999999987652222 22 111112223789999999999997654433221 1122223446899999999999999
Q ss_pred HHHHHHh
Q 014942 274 IRDWILT 280 (415)
Q Consensus 274 L~~~L~~ 280 (415)
++++|.+
T Consensus 151 ~~~~l~~ 157 (157)
T cd00882 151 LFEELAE 157 (157)
T ss_pred HHHHHhC
Confidence 9999863
No 219
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.71 E-value=4.4e-17 Score=150.64 Aligned_cols=146 Identities=19% Similarity=0.188 Sum_probs=96.9
Q ss_pred EEEEEecCCCCHHHHHHHHhCCcee------------------------------eeeCCCCceEEeEEEEEeCCCeeEE
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQKLS------------------------------IVTNKPQTTRHRILGICSGPEYQMI 166 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~~~~------------------------------~~~~~~~tt~~~~~~~~~~~~~~l~ 166 (415)
.|+++|++++|||||+.+|+..... ......++|++.....+...+..+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 3899999999999999999632110 0112456778877777888899999
Q ss_pred EEeCCCCchhhhhhHhHHHHHHHHhhhcccceEEEEecCCCC-------CchHHHHHHHHhcccCCCCCEEEEEeCCCCC
Q 014942 167 LYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKA-------PERIDEILEEGVGDHKDKLPILLVLNKKDLI 239 (415)
Q Consensus 167 liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~-------~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~ 239 (415)
+|||||+. . +...+..++..+|++|+|+|++++ ............... ...|+++|+||+|+.
T Consensus 81 liDtpG~~--~-------~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~iiivvNK~Dl~ 150 (219)
T cd01883 81 ILDAPGHR--D-------FVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTL-GVKQLIVAVNKMDDV 150 (219)
T ss_pred EEECCChH--H-------HHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHc-CCCeEEEEEEccccc
Confidence 99999952 2 223344557889999999999874 222222233333331 236899999999997
Q ss_pred C----hhHHHHHHHH----HhhcC---CCccEEEcccCCCCCHH
Q 014942 240 K----PGEIAKKLEW----YEKFT---DVDEVIPVSAKYGHGVE 272 (415)
Q Consensus 240 ~----~~~~~~~~~~----~~~~~---~~~~i~~vSA~~g~gv~ 272 (415)
. ........+. +.... ...+++++||++|.|++
T Consensus 151 ~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 151 TVNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred cccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 3 2222222222 22221 12579999999999987
No 220
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.71 E-value=2.2e-16 Score=133.52 Aligned_cols=157 Identities=22% Similarity=0.291 Sum_probs=112.1
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~ 193 (415)
|..+|.++|..|+||||++++|.+.....++ .|.-........+++++.+||..| +.. +...|++|+
T Consensus 15 rE~riLiLGLdNsGKTti~~kl~~~~~~~i~----pt~gf~Iktl~~~~~~L~iwDvGG--q~~-------lr~~W~nYf 81 (185)
T KOG0073|consen 15 REVRILILGLDNSGKTTIVKKLLGEDTDTIS----PTLGFQIKTLEYKGYTLNIWDVGG--QKT-------LRSYWKNYF 81 (185)
T ss_pred heeEEEEEecCCCCchhHHHHhcCCCccccC----CccceeeEEEEecceEEEEEEcCC--cch-------hHHHHHHhh
Confidence 4568999999999999999999998743322 334444455667888999999999 433 445588899
Q ss_pred cccceEEEEecCCCCC--chHHHHHHHHhccc-CCCCCEEEEEeCCCCCC---hhHHHHHH--HHHhhcCCCccEEEccc
Q 014942 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIK---PGEIAKKL--EWYEKFTDVDEVIPVSA 265 (415)
Q Consensus 194 ~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~-~~~~piilV~NK~Dl~~---~~~~~~~~--~~~~~~~~~~~i~~vSA 265 (415)
..+|++|||+|++++. +.....+..++..- ..+.|+++++||.|+.. .+.+.... +.+. ...-++++-|||
T Consensus 82 estdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~-ks~~~~l~~cs~ 160 (185)
T KOG0073|consen 82 ESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELA-KSHHWRLVKCSA 160 (185)
T ss_pred hccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhc-cccCceEEEEec
Confidence 9999999999997654 23333343333321 15689999999999974 33333222 2221 123358999999
Q ss_pred CCCCCHHHHHHHHHhhCCC
Q 014942 266 KYGHGVEDIRDWILTKLPL 284 (415)
Q Consensus 266 ~~g~gv~eL~~~L~~~l~~ 284 (415)
.+|+++.+-++||...+..
T Consensus 161 ~tge~l~~gidWL~~~l~~ 179 (185)
T KOG0073|consen 161 VTGEDLLEGIDWLCDDLMS 179 (185)
T ss_pred cccccHHHHHHHHHHHHHH
Confidence 9999999999999876643
No 221
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.71 E-value=2.1e-16 Score=150.59 Aligned_cols=113 Identities=25% Similarity=0.272 Sum_probs=79.7
Q ss_pred EEEEEecCCCCHHHHHHHHhCCceeee---eCCC--------------CceEEeEEEEEeCCCeeEEEEeCCCCchhhhh
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQKLSIV---TNKP--------------QTTRHRILGICSGPEYQMILYDTPGIIEKKIH 179 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~~~~~~---~~~~--------------~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~ 179 (415)
+|+++|++|+|||||+|+|++...... +... +.+.......+.+.+..+.+|||||.. .
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~--~-- 76 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYA--D-- 76 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHH--H--
Confidence 489999999999999999975432110 0011 122222334456678899999999953 2
Q ss_pred hHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCC
Q 014942 180 MLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (415)
Q Consensus 180 ~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~ 240 (415)
+...+..++..+|++++|+|++.+.......+++.+.. .+.|+++|+||+|+..
T Consensus 77 -----f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~--~~~p~iivvNK~D~~~ 130 (268)
T cd04170 77 -----FVGETRAALRAADAALVVVSAQSGVEVGTEKLWEFADE--AGIPRIIFINKMDRER 130 (268)
T ss_pred -----HHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHH--cCCCEEEEEECCccCC
Confidence 22345566889999999999998876665555555555 6789999999999864
No 222
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.70 E-value=2.3e-16 Score=158.82 Aligned_cols=209 Identities=16% Similarity=0.144 Sum_probs=121.9
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCcee--eeeCCCCceEEeEEEE--------------E------eC-C-----CeeE
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLS--IVTNKPQTTRHRILGI--------------C------SG-P-----EYQM 165 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~--~~~~~~~tt~~~~~~~--------------~------~~-~-----~~~l 165 (415)
...+|+++|+.++|||||+.+|.+.... .-....+.|....... + .. + ...+
T Consensus 8 ~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 87 (411)
T PRK04000 8 PEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRRV 87 (411)
T ss_pred CcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccEE
Confidence 3458999999999999999999663111 0011223333211100 0 00 0 2579
Q ss_pred EEEeCCCCchhhhhhHhHHHHHHHHhhhcccceEEEEecCCCCC-chHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHH
Q 014942 166 ILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP-ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI 244 (415)
Q Consensus 166 ~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~-~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~ 244 (415)
.||||||. .. +...+......+|++++|+|++++. .......+..+... ...|+++|+||+|+.+....
T Consensus 88 ~liDtPG~--~~-------f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~-~i~~iiVVlNK~Dl~~~~~~ 157 (411)
T PRK04000 88 SFVDAPGH--ET-------LMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDII-GIKNIVIVQNKIDLVSKERA 157 (411)
T ss_pred EEEECCCH--HH-------HHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHc-CCCcEEEEEEeeccccchhH
Confidence 99999994 32 3334555567889999999999765 34433344444331 22468999999999864433
Q ss_pred HHHHHHHhhc-----CCCccEEEcccCCCCCHHHHHHHHHhhCCCCCCCCCCCCccccCCchhHHHHHHHHHHHHh---h
Q 014942 245 AKKLEWYEKF-----TDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKFQDIVSEHPERFFVGEIIREKIFM---Q 316 (415)
Q Consensus 245 ~~~~~~~~~~-----~~~~~i~~vSA~~g~gv~eL~~~L~~~l~~~~~~~~~~~~~~t~~~~~~~i~eiireki~~---~ 316 (415)
....+.+... ....+++++||++|.|+++|+++|...++.... ..+.|.++.+..++. +.. .
T Consensus 158 ~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~~~~--------~~~~~~r~~I~~~f~--v~~~g~~ 227 (411)
T PRK04000 158 LENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIPTPER--------DLDKPPRMYVARSFD--VNKPGTP 227 (411)
T ss_pred HHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCCCCCC--------CCCCCceEEEEeeee--ecCCCcc
Confidence 2222222211 123589999999999999999999998764211 123454443332210 000 0
Q ss_pred cCCCCCceEEEEEEEEEecCCCeeEE
Q 014942 317 YRNEVPYACQVNVVSYKTRPTAKDFI 342 (415)
Q Consensus 317 ~~~eipys~~v~i~~~~~~~~~~~~i 342 (415)
+++..|-.....+..|..+.+..+.+
T Consensus 228 ~~~~~G~Vv~G~v~~G~l~~gd~v~i 253 (411)
T PRK04000 228 PEKLKGGVIGGSLIQGVLKVGDEIEI 253 (411)
T ss_pred ccCCcceEEEEEEEeCEEecCCEEEE
Confidence 12234444566777777765544444
No 223
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.70 E-value=3.3e-16 Score=157.70 Aligned_cols=161 Identities=19% Similarity=0.217 Sum_probs=101.9
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceee--eeCCCCceEEeE--------------------EEEEeC------CCeeE
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI--VTNKPQTTRHRI--------------------LGICSG------PEYQM 165 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~--~~~~~~tt~~~~--------------------~~~~~~------~~~~l 165 (415)
...+|+++|++++|||||+++|.+..... .....+.|...- ...+.. .+..+
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 82 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRV 82 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEE
Confidence 34589999999999999999997642110 001111221110 000011 14579
Q ss_pred EEEeCCCCchhhhhhHhHHHHHHHHhhhcccceEEEEecCCCCC-chHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHH
Q 014942 166 ILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP-ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI 244 (415)
Q Consensus 166 ~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~-~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~ 244 (415)
.+|||||+ +. +...+...+..+|++++|+|++++. .......+..+... ...|+++|+||+|+.+....
T Consensus 83 ~liDtPGh--~~-------f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~-gi~~iIVvvNK~Dl~~~~~~ 152 (406)
T TIGR03680 83 SFVDAPGH--ET-------LMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEII-GIKNIVIVQNKIDLVSKEKA 152 (406)
T ss_pred EEEECCCH--HH-------HHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHc-CCCeEEEEEEccccCCHHHH
Confidence 99999994 32 3344555677899999999999765 33333333333331 23579999999999865433
Q ss_pred HHHHHHHhhc-----CCCccEEEcccCCCCCHHHHHHHHHhhCCC
Q 014942 245 AKKLEWYEKF-----TDVDEVIPVSAKYGHGVEDIRDWILTKLPL 284 (415)
Q Consensus 245 ~~~~~~~~~~-----~~~~~i~~vSA~~g~gv~eL~~~L~~~l~~ 284 (415)
......+... ....+++++||++|.|+++|+++|...++.
T Consensus 153 ~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~~ 197 (406)
T TIGR03680 153 LENYEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIPT 197 (406)
T ss_pred HHHHHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCCC
Confidence 2222222211 123579999999999999999999998764
No 224
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.70 E-value=9.7e-17 Score=150.24 Aligned_cols=157 Identities=31% Similarity=0.405 Sum_probs=118.1
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhcc
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (415)
..|+++|.|+||||||+|+|++.+.. +..++.||..++.+.+.+.+.+++++|+||+......... .-+++.+..+.
T Consensus 64 a~v~lVGfPsvGKStLL~~LTnt~se-va~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~g--rG~~vlsv~R~ 140 (365)
T COG1163 64 ATVALVGFPSVGKSTLLNKLTNTKSE-VADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRG--RGRQVLSVARN 140 (365)
T ss_pred eEEEEEcCCCccHHHHHHHHhCCCcc-ccccCceecccccceEeecCceEEEEcCcccccCcccCCC--Ccceeeeeecc
Confidence 38999999999999999999998764 7899999999999999999999999999999754332211 12345667899
Q ss_pred cceEEEEecCCCCCchH---HH----------------------------------------HHHHHh------------
Q 014942 196 ADCIVVLVDACKAPERI---DE----------------------------------------ILEEGV------------ 220 (415)
Q Consensus 196 aD~ii~VvD~~~~~~~~---~~----------------------------------------~l~~~l------------ 220 (415)
||++++|+|+....... .. .+..++
T Consensus 141 ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~I 220 (365)
T COG1163 141 ADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLI 220 (365)
T ss_pred CCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEE
Confidence 99999999997543210 00 111111
Q ss_pred -------------cccCCCCCEEEEEeCCCCCChhHHHHHHHHHhhcCCCccEEEcccCCCCCHHHHHHHHHhhC
Q 014942 221 -------------GDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKL 282 (415)
Q Consensus 221 -------------~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gv~eL~~~L~~~l 282 (415)
.....-+|.+.|+||+|+...+.+....+. ..++++||..|.|+++|.+.|.+.+
T Consensus 221 r~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~e~~~~l~~~-------~~~v~isa~~~~nld~L~e~i~~~L 288 (365)
T COG1163 221 REDVTLDDLIDALEGNRVYKPALYVVNKIDLPGLEELERLARK-------PNSVPISAKKGINLDELKERIWDVL 288 (365)
T ss_pred ecCCcHHHHHHHHhhcceeeeeEEEEecccccCHHHHHHHHhc-------cceEEEecccCCCHHHHHHHHHHhh
Confidence 111134799999999999986554443322 2689999999999999999999876
No 225
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.69 E-value=2e-16 Score=149.29 Aligned_cols=165 Identities=21% Similarity=0.227 Sum_probs=121.0
Q ss_pred EEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeC-CCeeEEEEeCCCCchhhhh--hHhHHHHHHHHhhh
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG-PEYQMILYDTPGIIEKKIH--MLDSMMMKNVRSAG 193 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~-~~~~l~liDtpG~~~~~~~--~l~~~~~~~~~~~~ 193 (415)
-|++||.||+|||||++++...+.. +.++|.||..+..+++.. .+..+++-|.||++..... .+...|.+ .+
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPK-IadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLr----HI 235 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPK-IADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLR----HI 235 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCc-ccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHH----HH
Confidence 5899999999999999999988866 689999999999888774 5567999999999864432 34444433 36
Q ss_pred cccceEEEEecCCCCC----chHHHHHHHHhccc---CCCCCEEEEEeCCCCC-ChhHHHHHHHHHhhcCCCccEEEccc
Q 014942 194 INADCIVVLVDACKAP----ERIDEILEEGVGDH---KDKLPILLVLNKKDLI-KPGEIAKKLEWYEKFTDVDEVIPVSA 265 (415)
Q Consensus 194 ~~aD~ii~VvD~~~~~----~~~~~~l~~~l~~~---~~~~piilV~NK~Dl~-~~~~~~~~~~~~~~~~~~~~i~~vSA 265 (415)
..|-++++|+|.+... ......+...+..+ -.++|.++|+||+|+. ..+..+.....+.........+++||
T Consensus 236 ERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa 315 (369)
T COG0536 236 ERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISA 315 (369)
T ss_pred HhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeeh
Confidence 7899999999997432 12222333333322 1578999999999965 44555555666665444433344999
Q ss_pred CCCCCHHHHHHHHHhhCCCCC
Q 014942 266 KYGHGVEDIRDWILTKLPLGP 286 (415)
Q Consensus 266 ~~g~gv~eL~~~L~~~l~~~~ 286 (415)
.++.|+++|+..+.+.+...+
T Consensus 316 ~t~~g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 316 LTREGLDELLRALAELLEETK 336 (369)
T ss_pred hcccCHHHHHHHHHHHHHHhh
Confidence 999999999999998886643
No 226
>PLN03126 Elongation factor Tu; Provisional
Probab=99.69 E-value=4e-16 Score=158.99 Aligned_cols=203 Identities=16% Similarity=0.144 Sum_probs=130.5
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceee---------------eeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI---------------VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI 178 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~---------------~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~ 178 (415)
...+|+++|++++|||||+++|++....+ .....+.|.+.....+...+.++.||||||+ ..
T Consensus 80 ~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh--~~- 156 (478)
T PLN03126 80 PHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGH--AD- 156 (478)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCH--HH-
Confidence 34589999999999999999998532211 1223455665555556677889999999995 22
Q ss_pred hhHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCC-EEEEEeCCCCCChhHHHH-----HHHHHh
Q 014942 179 HMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKDLIKPGEIAK-----KLEWYE 252 (415)
Q Consensus 179 ~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~p-iilV~NK~Dl~~~~~~~~-----~~~~~~ 252 (415)
+...+...+..+|++++|+|+..+...+...++..+.. .++| +|+++||+|+.+.++..+ +...+.
T Consensus 157 ------f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~--~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~ 228 (478)
T PLN03126 157 ------YVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQ--VGVPNMVVFLNKQDQVDDEELLELVELEVRELLS 228 (478)
T ss_pred ------HHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHH--cCCCeEEEEEecccccCHHHHHHHHHHHHHHHHH
Confidence 34455566789999999999999887777777776666 6778 778999999986433221 222222
Q ss_pred hc---CCCccEEEcccCCCCC------------------HHHHHHHHHhhCCCCCCCCCCCCccccCCchhHHHHHHHHH
Q 014942 253 KF---TDVDEVIPVSAKYGHG------------------VEDIRDWILTKLPLGPAYYPKFQDIVSEHPERFFVGEIIRE 311 (415)
Q Consensus 253 ~~---~~~~~i~~vSA~~g~g------------------v~eL~~~L~~~l~~~~~~~~~~~~~~t~~~~~~~i~eiire 311 (415)
.. ....+++++||.+|.+ +..|++.|.+..+.... ..+.|.++.+.++++
T Consensus 229 ~~g~~~~~~~~vp~Sa~~g~n~~~~~~~~~~g~~~wy~~i~~Ll~~l~~~~~~p~r--------~~~~p~r~~I~~vf~- 299 (478)
T PLN03126 229 SYEFPGDDIPIISGSALLALEALMENPNIKRGDNKWVDKIYELMDAVDSYIPIPQR--------QTDLPFLLAVEDVFS- 299 (478)
T ss_pred hcCCCcCcceEEEEEccccccccccccccccCCCchhhhHHHHHHHHHHhCCCCCC--------ccccceeeEEEEEEE-
Confidence 21 1245899999998843 45677777765432111 123455544443321
Q ss_pred HHHhhcCCCCCceEEEEEEEEEecCCCeeEE
Q 014942 312 KIFMQYRNEVPYACQVNVVSYKTRPTAKDFI 342 (415)
Q Consensus 312 ki~~~~~~eipys~~v~i~~~~~~~~~~~~i 342 (415)
-+.+|.-....+..|..+.+..+.+
T Consensus 300 ------v~g~GtVv~G~V~sG~i~~Gd~v~i 324 (478)
T PLN03126 300 ------ITGRGTVATGRVERGTVKVGETVDI 324 (478)
T ss_pred ------eCCceEEEEEEEEcCeEecCCEEEE
Confidence 2344544556677777666554444
No 227
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.69 E-value=2e-17 Score=138.67 Aligned_cols=157 Identities=18% Similarity=0.237 Sum_probs=115.1
Q ss_pred ccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceE----EeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHH
Q 014942 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTR----HRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~----~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~ 190 (415)
..+|+++|..-||||||+-+++..+|.. +.-+|. ......+.....++.+|||+| ++.|+.+...+
T Consensus 13 ~FK~VLLGEGCVGKtSLVLRy~EnkFn~---kHlsTlQASF~~kk~n~ed~ra~L~IWDTAG--QErfHALGPIY----- 82 (218)
T KOG0088|consen 13 KFKIVLLGEGCVGKTSLVLRYVENKFNC---KHLSTLQASFQNKKVNVEDCRADLHIWDTAG--QERFHALGPIY----- 82 (218)
T ss_pred eeEEEEEcCCccchhHHHHHHHHhhcch---hhHHHHHHHHhhcccccccceeeeeeeeccc--hHhhhccCceE-----
Confidence 3589999999999999999999887642 111110 000111233445889999999 78888887665
Q ss_pred hhhcccceEEEEecCCCC--CchHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHHHH-HHHhhcCCCccEEEcccCC
Q 014942 191 SAGINADCIVVLVDACKA--PERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKL-EWYEKFTDVDEVIPVSAKY 267 (415)
Q Consensus 191 ~~~~~aD~ii~VvD~~~~--~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~~~-~~~~~~~~~~~i~~vSA~~ 267 (415)
++.++.+++|+|+++. ++....|+.++...+...+-+++|+||+||...+.+.... ..+.+..+ ..++++||+.
T Consensus 83 --YRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvG-A~y~eTSAk~ 159 (218)
T KOG0088|consen 83 --YRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVG-ALYMETSAKD 159 (218)
T ss_pred --EeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhc-hhheeccccc
Confidence 8999999999999864 4677788888776665678899999999998665554322 23333323 4789999999
Q ss_pred CCCHHHHHHHHHhhCCC
Q 014942 268 GHGVEDIRDWILTKLPL 284 (415)
Q Consensus 268 g~gv~eL~~~L~~~l~~ 284 (415)
+.||.+||+.|...+-+
T Consensus 160 N~Gi~elFe~Lt~~MiE 176 (218)
T KOG0088|consen 160 NVGISELFESLTAKMIE 176 (218)
T ss_pred ccCHHHHHHHHHHHHHH
Confidence 99999999999876543
No 228
>PRK12740 elongation factor G; Reviewed
Probab=99.69 E-value=1.4e-16 Score=170.24 Aligned_cols=223 Identities=20% Similarity=0.164 Sum_probs=139.1
Q ss_pred EecCCCCHHHHHHHHhCCceeee-----------e------CCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhH
Q 014942 121 LGKPNVGKSTLANQMIGQKLSIV-----------T------NKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDS 183 (415)
Q Consensus 121 vG~~~vGKSSLln~l~~~~~~~~-----------~------~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~ 183 (415)
+|++|+|||||+++|+.....+. . ...+.|.......+.+.+..+.+|||||...
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~-------- 72 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVD-------- 72 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHH--------
Confidence 59999999999999964432111 1 1233444444455677889999999999632
Q ss_pred HHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChh---HHHHHHHHHh--------
Q 014942 184 MMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG---EIAKKLEWYE-------- 252 (415)
Q Consensus 184 ~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~---~~~~~~~~~~-------- 252 (415)
+...+..++..+|++++|+|++.+.......++..+.. .+.|+++|+||+|+.... .+....+.+.
T Consensus 73 -~~~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~--~~~p~iiv~NK~D~~~~~~~~~~~~l~~~l~~~~~~~~~ 149 (668)
T PRK12740 73 -FTGEVERALRVLDGAVVVVCAVGGVEPQTETVWRQAEK--YGVPRIIFVNKMDRAGADFFRVLAQLQEKLGAPVVPLQL 149 (668)
T ss_pred -HHHHHHHHHHHhCeEEEEEeCCCCcCHHHHHHHHHHHH--cCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCceeEEe
Confidence 22345566789999999999998876666656555555 678999999999986321 1111111000
Q ss_pred --------------------------------------------------------------------------------
Q 014942 253 -------------------------------------------------------------------------------- 252 (415)
Q Consensus 253 -------------------------------------------------------------------------------- 252 (415)
T Consensus 150 p~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~~le~~l~~~~l~~~~~~~~~~~ 229 (668)
T PRK12740 150 PIGEGDDFTGVVDLLSMKAYRYDEGGPSEEIEIPAELLDRAEEAREELLEALAEFDDELMEKYLEGEELSEEEIKAGLRK 229 (668)
T ss_pred cccCCCCceEEEECccceEEEecCCCeeEEecCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHCCCCCCHHHHHHHHHH
Confidence
Q ss_pred --hcCCCccEEEcccCCCCCHHHHHHHHHhhCCCCCCCCCCCCc-------cccCCchhHHHHHHHHHHHHhhcCCCCCc
Q 014942 253 --KFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKFQD-------IVSEHPERFFVGEIIREKIFMQYRNEVPY 323 (415)
Q Consensus 253 --~~~~~~~i~~vSA~~g~gv~eL~~~L~~~l~~~~~~~~~~~~-------~~t~~~~~~~i~eiireki~~~~~~eipy 323 (415)
....+.|++..||++|.|++.|++.|...+|.... .+.... .....+...+++.++ |++ ..+.+|.
T Consensus 230 ~~~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~lPsp~~-~~~~~~~~~~~~~~~~~~~~~~l~a~v~--k~~--~~~~~G~ 304 (668)
T PRK12740 230 ATLAGEIVPVFCGSALKNKGVQRLLDAVVDYLPSPLE-VPPVDGEDGEEGAELAPDPDGPLVALVF--KTM--DDPFVGK 304 (668)
T ss_pred HHHcCCEEEEEeccccCCccHHHHHHHHHHHCCChhh-cccccCCCCccccccccCCCCCeEEEEE--Eee--ecCCCCc
Confidence 01124578999999999999999999999986421 110000 001112222222222 222 2567788
Q ss_pred eEEEEEEEEEecCCCeeEEEEEEEEeeCCceeEEee
Q 014942 324 ACQVNVVSYKTRPTAKDFIQVEIVVEKNSQKIILIG 359 (415)
Q Consensus 324 s~~v~i~~~~~~~~~~~~i~~~~~~~r~~q~~iiiG 359 (415)
.+.+++.+|+.+.+..+++......++.++.+.+.|
T Consensus 305 i~~~RV~sG~L~~g~~v~~~~~~~~~~i~~l~~l~g 340 (668)
T PRK12740 305 LSLVRVYSGTLKKGDTLYNSGTGKKERVGRLYRMHG 340 (668)
T ss_pred EEEEEEeeeEEcCCCEEEeCCCCCcEEecceeeecC
Confidence 999999999999877665543222233344444444
No 229
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.69 E-value=3.8e-16 Score=157.18 Aligned_cols=147 Identities=24% Similarity=0.211 Sum_probs=99.4
Q ss_pred EEEEEecCCCCHHHHHHHHhCCceeee--------------------------------eCCCCceEEeEEEEEeCCCee
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQKLSIV--------------------------------TNKPQTTRHRILGICSGPEYQ 164 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~~~~~~--------------------------------~~~~~tt~~~~~~~~~~~~~~ 164 (415)
+|+++|++++|||||+++|+.....+. ....+.|.+.....+...+.+
T Consensus 2 ~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~~ 81 (406)
T TIGR02034 2 RFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKRK 81 (406)
T ss_pred eEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCeE
Confidence 799999999999999999974322110 012234566556667778889
Q ss_pred EEEEeCCCCchhhhhhHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChh--
Q 014942 165 MILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG-- 242 (415)
Q Consensus 165 l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~-- 242 (415)
+.|+||||+ .. +...+...+..+|++++|+|+..+...++...+.++... ...++++|+||+|+....
T Consensus 82 ~~liDtPGh--~~-------f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~-~~~~iivviNK~D~~~~~~~ 151 (406)
T TIGR02034 82 FIVADTPGH--EQ-------YTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLL-GIRHVVLAVNKMDLVDYDEE 151 (406)
T ss_pred EEEEeCCCH--HH-------HHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHc-CCCcEEEEEEecccccchHH
Confidence 999999994 32 233344567899999999999988866665555544442 234688999999997422
Q ss_pred HHHHHHHHHh---hcCC--CccEEEcccCCCCCHHH
Q 014942 243 EIAKKLEWYE---KFTD--VDEVIPVSAKYGHGVED 273 (415)
Q Consensus 243 ~~~~~~~~~~---~~~~--~~~i~~vSA~~g~gv~e 273 (415)
.+....+.+. ...+ ..+++++||++|.|+++
T Consensus 152 ~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 152 VFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 2222222221 2122 24799999999999985
No 230
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.68 E-value=4.2e-16 Score=159.33 Aligned_cols=151 Identities=21% Similarity=0.167 Sum_probs=100.1
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeee--------------------------------CCCCceEEeEEEEEeCC
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVT--------------------------------NKPQTTRHRILGICSGP 161 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~--------------------------------~~~~tt~~~~~~~~~~~ 161 (415)
...+|+++|++++|||||+++|+.....+.. ...+.|.+.....+..+
T Consensus 26 ~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~~ 105 (474)
T PRK05124 26 SLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTE 105 (474)
T ss_pred CceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEeccC
Confidence 3458999999999999999999855422211 01233445545556677
Q ss_pred CeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCCh
Q 014942 162 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (415)
Q Consensus 162 ~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~ 241 (415)
+.++.||||||+ .. +...+...+..+|++++|+|+..+...++.....++... ...|+|+|+||+|+...
T Consensus 106 ~~~i~~iDTPGh--~~-------f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~l-g~~~iIvvvNKiD~~~~ 175 (474)
T PRK05124 106 KRKFIIADTPGH--EQ-------YTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLL-GIKHLVVAVNKMDLVDY 175 (474)
T ss_pred CcEEEEEECCCc--HH-------HHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHh-CCCceEEEEEeeccccc
Confidence 889999999994 32 233344456899999999999988755444333333332 22478999999999742
Q ss_pred --hHHHHHHHHHhh---c---CCCccEEEcccCCCCCHHHH
Q 014942 242 --GEIAKKLEWYEK---F---TDVDEVIPVSAKYGHGVEDI 274 (415)
Q Consensus 242 --~~~~~~~~~~~~---~---~~~~~i~~vSA~~g~gv~eL 274 (415)
..+......+.. . ....+++++||++|.|+.++
T Consensus 176 ~~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 176 SEEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred hhHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 223333332221 1 12468999999999999764
No 231
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=4.4e-16 Score=135.16 Aligned_cols=160 Identities=19% Similarity=0.226 Sum_probs=118.2
Q ss_pred CCCccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHh
Q 014942 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (415)
Q Consensus 112 ~~~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~ 191 (415)
..+..+|+++|-.|+||||++++|...++..+ -.|.......+.+.+..+.+||..| +.+.+. .+..
T Consensus 14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt----vPTiGfnVE~v~ykn~~f~vWDvGG--q~k~R~-------lW~~ 80 (181)
T KOG0070|consen 14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTT----VPTIGFNVETVEYKNISFTVWDVGG--QEKLRP-------LWKH 80 (181)
T ss_pred CcceEEEEEEeccCCCceeeeEeeccCCcccC----CCccccceeEEEEcceEEEEEecCC--Cccccc-------chhh
Confidence 44667999999999999999999987776432 2233334445666788999999999 444333 3777
Q ss_pred hhcccceEEEEecCCCCC--chHHHHHHHHhcccC-CCCCEEEEEeCCCCCChh---HHHHHHHHHhhcCCCccEEEccc
Q 014942 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHK-DKLPILLVLNKKDLIKPG---EIAKKLEWYEKFTDVDEVIPVSA 265 (415)
Q Consensus 192 ~~~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~-~~~piilV~NK~Dl~~~~---~~~~~~~~~~~~~~~~~i~~vSA 265 (415)
|+.+.+++|||+|+++.. ....+.+..++.... .+.|+++.+||.|+...- ++........-......+..|+|
T Consensus 81 Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~iq~~~a 160 (181)
T KOG0070|consen 81 YFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWHIQSTCA 160 (181)
T ss_pred hccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCcEEeeccc
Confidence 899999999999998764 445556666665532 579999999999997543 34443333333334457899999
Q ss_pred CCCCCHHHHHHHHHhhCCC
Q 014942 266 KYGHGVEDIRDWILTKLPL 284 (415)
Q Consensus 266 ~~g~gv~eL~~~L~~~l~~ 284 (415)
.+|+|+.+.++||.+.+..
T Consensus 161 ~~G~GL~egl~wl~~~~~~ 179 (181)
T KOG0070|consen 161 ISGEGLYEGLDWLSNNLKK 179 (181)
T ss_pred cccccHHHHHHHHHHHHhc
Confidence 9999999999999988754
No 232
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.67 E-value=8.7e-16 Score=141.33 Aligned_cols=171 Identities=24% Similarity=0.265 Sum_probs=121.8
Q ss_pred CCccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhh
Q 014942 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (415)
Q Consensus 113 ~~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~ 192 (415)
..+.+|.++|.+|+|||||+|+|.+.+...++..+.++........+.++..+++|||||+.+.. .-...+.+.++.+
T Consensus 37 ~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~--~~D~~~r~~~~d~ 114 (296)
T COG3596 37 KEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGK--DKDAEHRQLYRDY 114 (296)
T ss_pred cCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccceEEecCCCcccch--hhhHHHHHHHHHH
Confidence 34557889999999999999999987777677666555555555556677799999999985522 1233345557777
Q ss_pred hcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChh------------HH----HHHHHHHh-hcC
Q 014942 193 GINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG------------EI----AKKLEWYE-KFT 255 (415)
Q Consensus 193 ~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~------------~~----~~~~~~~~-~~~ 255 (415)
+...|++++++|+.++.-..+..+++-+.....+.|+++++|.+|+..+. .+ ++..+... ...
T Consensus 115 l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~~q 194 (296)
T COG3596 115 LPKLDLVLWLIKADDRALGTDEDFLRDVIILGLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRLFQ 194 (296)
T ss_pred hhhccEEEEeccCCCccccCCHHHHHHHHHhccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 89999999999998887555554444333333568999999999986431 11 11111111 122
Q ss_pred CCccEEEcccCCCCCHHHHHHHHHhhCCCC
Q 014942 256 DVDEVIPVSAKYGHGVEDIRDWILTKLPLG 285 (415)
Q Consensus 256 ~~~~i~~vSA~~g~gv~eL~~~L~~~l~~~ 285 (415)
...|++.+|+..+.|++.|...+++.+|..
T Consensus 195 ~V~pV~~~~~r~~wgl~~l~~ali~~lp~e 224 (296)
T COG3596 195 EVKPVVAVSGRLPWGLKELVRALITALPVE 224 (296)
T ss_pred hcCCeEEeccccCccHHHHHHHHHHhCccc
Confidence 345888899999999999999999999854
No 233
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.67 E-value=5.2e-16 Score=164.63 Aligned_cols=149 Identities=23% Similarity=0.226 Sum_probs=99.0
Q ss_pred ccEEEEEecCCCCHHHHHHHHhCCceeeee----------CCCC----------------------ceEEeEEEEEeCCC
Q 014942 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVT----------NKPQ----------------------TTRHRILGICSGPE 162 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~~~~~~~~~----------~~~~----------------------tt~~~~~~~~~~~~ 162 (415)
..+|+++|++|+|||||+++|+.....+.. ...+ .|.+.....+...+
T Consensus 24 ~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~~~ 103 (632)
T PRK05506 24 LLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFATPK 103 (632)
T ss_pred eeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEccCC
Confidence 347999999999999999999865443321 1233 34444444566777
Q ss_pred eeEEEEeCCCCchhhhhhHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCC--
Q 014942 163 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK-- 240 (415)
Q Consensus 163 ~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~-- 240 (415)
.++.|+||||+ .. +.......+..+|++++|+|+..+....+.....++... ...|+++|+||+|+..
T Consensus 104 ~~~~liDtPG~--~~-------f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~-~~~~iivvvNK~D~~~~~ 173 (632)
T PRK05506 104 RKFIVADTPGH--EQ-------YTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLL-GIRHVVLAVNKMDLVDYD 173 (632)
T ss_pred ceEEEEECCCh--HH-------HHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHh-CCCeEEEEEEecccccch
Confidence 89999999995 22 222333457899999999999887755544444444431 2357889999999974
Q ss_pred hhHHHHHHHHHh---hcCCC--ccEEEcccCCCCCHHH
Q 014942 241 PGEIAKKLEWYE---KFTDV--DEVIPVSAKYGHGVED 273 (415)
Q Consensus 241 ~~~~~~~~~~~~---~~~~~--~~i~~vSA~~g~gv~e 273 (415)
..........+. ...++ .+++++||++|.|+.+
T Consensus 174 ~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 174 QEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred hHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 222232322222 22222 4699999999999974
No 234
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.66 E-value=5.1e-16 Score=131.07 Aligned_cols=156 Identities=21% Similarity=0.314 Sum_probs=112.6
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEe---EEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhh
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHR---ILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~---~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~ 192 (415)
.++.++|.+-||||||+..+...+++..++ |....+. ....-.+...++.+|||+| ++.++++ +++|
T Consensus 9 frlivigdstvgkssll~~ft~gkfaelsd-ptvgvdffarlie~~pg~riklqlwdtag--qerfrsi-------tksy 78 (213)
T KOG0091|consen 9 FRLIVIGDSTVGKSSLLRYFTEGKFAELSD-PTVGVDFFARLIELRPGYRIKLQLWDTAG--QERFRSI-------TKSY 78 (213)
T ss_pred EEEEEEcCCcccHHHHHHHHhcCcccccCC-CccchHHHHHHHhcCCCcEEEEEEeeccc--hHHHHHH-------HHHH
Confidence 478999999999999999999988875442 2222111 1122334556899999999 6776655 6667
Q ss_pred hcccceEEEEecCCCCC--chHHHHHHHHhcccC-CCCC-EEEEEeCCCCCChhHHHH-HHHHHhhcCCCccEEEcccCC
Q 014942 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHK-DKLP-ILLVLNKKDLIKPGEIAK-KLEWYEKFTDVDEVIPVSAKY 267 (415)
Q Consensus 193 ~~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~-~~~p-iilV~NK~Dl~~~~~~~~-~~~~~~~~~~~~~i~~vSA~~ 267 (415)
++++-++++|+|.++.. +....|+.+...... +.++ +.+|+.|+||...+.+.. ..+.+....+. .++++||++
T Consensus 79 yrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM-~FVETSak~ 157 (213)
T KOG0091|consen 79 YRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGM-AFVETSAKN 157 (213)
T ss_pred hhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCc-eEEEecccC
Confidence 99999999999998654 666777776554432 3344 678999999987665543 23444444443 799999999
Q ss_pred CCCHHHHHHHHHhhC
Q 014942 268 GHGVEDIRDWILTKL 282 (415)
Q Consensus 268 g~gv~eL~~~L~~~l 282 (415)
|.||++.++.|.+.+
T Consensus 158 g~NVeEAF~mlaqeI 172 (213)
T KOG0091|consen 158 GCNVEEAFDMLAQEI 172 (213)
T ss_pred CCcHHHHHHHHHHHH
Confidence 999999999887654
No 235
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.66 E-value=8.7e-16 Score=155.89 Aligned_cols=156 Identities=19% Similarity=0.189 Sum_probs=105.6
Q ss_pred ccEEEEEecCCCCHHHHHHHHhCCcee------------------------ee------eCCCCceEEeEEEEEeCCCee
Q 014942 115 SGYVAVLGKPNVGKSTLANQMIGQKLS------------------------IV------TNKPQTTRHRILGICSGPEYQ 164 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~~~~~~------------------------~~------~~~~~tt~~~~~~~~~~~~~~ 164 (415)
..+|+++|+.++|||||+.+|+...-. .+ ....+.|.+.....+.+.+..
T Consensus 7 ~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~~~ 86 (446)
T PTZ00141 7 HINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYY 86 (446)
T ss_pred eEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCCeE
Confidence 457999999999999999999742110 00 122345555555567778889
Q ss_pred EEEEeCCCCchhhhhhHhHHHHHHHHhhhcccceEEEEecCCCCC-------chHHHHHHHHhcccCCCCC-EEEEEeCC
Q 014942 165 MILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP-------ERIDEILEEGVGDHKDKLP-ILLVLNKK 236 (415)
Q Consensus 165 l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~-------~~~~~~l~~~l~~~~~~~p-iilV~NK~ 236 (415)
+.|+||||+ .. +...+...+..+|++++|+|+..+. ..+....+.++.. .++| +|+++||+
T Consensus 87 i~lIDtPGh--~~-------f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~--~gi~~iiv~vNKm 155 (446)
T PTZ00141 87 FTIIDAPGH--RD-------FIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT--LGVKQMIVCINKM 155 (446)
T ss_pred EEEEECCCh--HH-------HHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH--cCCCeEEEEEEcc
Confidence 999999994 22 4455666688999999999999875 2455555656655 5666 67899999
Q ss_pred CCCC----hhHHHHHHHH----HhhcC---CCccEEEcccCCCCCHHH------------HHHHHHhh
Q 014942 237 DLIK----PGEIAKKLEW----YEKFT---DVDEVIPVSAKYGHGVED------------IRDWILTK 281 (415)
Q Consensus 237 Dl~~----~~~~~~~~~~----~~~~~---~~~~i~~vSA~~g~gv~e------------L~~~L~~~ 281 (415)
|+.. ........+. +.... ...+++++||.+|.|+.+ |++.|...
T Consensus 156 D~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~~~~~~~Wy~G~tL~~~l~~~ 223 (446)
T PTZ00141 156 DDKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIEKSDNMPWYKGPTLLEALDTL 223 (446)
T ss_pred ccccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCcccCCCCCcccchHHHHHHHhCC
Confidence 9532 2222222222 22211 136899999999999964 77776543
No 236
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.66 E-value=8.2e-16 Score=139.15 Aligned_cols=159 Identities=21% Similarity=0.279 Sum_probs=109.8
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEE--EEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~--~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~ 191 (415)
+..+|+++|.+|||||+|+.++++..+. ..+.+|..+.... .+......+.|+||+| +..+..+...
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~--~~y~ptied~y~k~~~v~~~~~~l~ilDt~g--~~~~~~~~~~------- 70 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFV--EDYDPTIEDSYRKELTVDGEVCMLEILDTAG--QEEFSAMRDL------- 70 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccc--cccCCCccccceEEEEECCEEEEEEEEcCCC--cccChHHHHH-------
Confidence 4568999999999999999999998885 4444444443333 3445567889999999 4455544433
Q ss_pred hhcccceEEEEecCCCCC--chHHHHHHHHhccc-CCCCCEEEEEeCCCCCChhHHHHHH-HHHhhcCCCccEEEcccCC
Q 014942 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKL-EWYEKFTDVDEVIPVSAKY 267 (415)
Q Consensus 192 ~~~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~-~~~~piilV~NK~Dl~~~~~~~~~~-~~~~~~~~~~~i~~vSA~~ 267 (415)
++..+|+.++|++.++.. +........+++.. ....|+++|+||+|+...+.+.... ..+..... ++++++||+.
T Consensus 71 ~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~-~~f~E~Sak~ 149 (196)
T KOG0395|consen 71 YIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWG-CAFIETSAKL 149 (196)
T ss_pred hhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcC-CcEEEeeccC
Confidence 377889999999988654 33333333332221 1568999999999998644433222 22333333 4699999999
Q ss_pred CCCHHHHHHHHHhhCCC
Q 014942 268 GHGVEDIRDWILTKLPL 284 (415)
Q Consensus 268 g~gv~eL~~~L~~~l~~ 284 (415)
+.+++++|..|...+..
T Consensus 150 ~~~v~~~F~~L~r~~~~ 166 (196)
T KOG0395|consen 150 NYNVDEVFYELVREIRL 166 (196)
T ss_pred CcCHHHHHHHHHHHHHh
Confidence 99999999999986643
No 237
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.65 E-value=4e-15 Score=137.27 Aligned_cols=112 Identities=24% Similarity=0.309 Sum_probs=77.4
Q ss_pred EEEEEecCCCCHHHHHHHHhCCceeeeeCCCC---------------ceEE--eEEEEEe--------CCCeeEEEEeCC
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQ---------------TTRH--RILGICS--------GPEYQMILYDTP 171 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~---------------tt~~--~~~~~~~--------~~~~~l~liDtp 171 (415)
.|+++|+.++|||||+++|+.....+.....+ .|.. .+...+. ..+..+.+||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 69999999999999999997543211111111 1111 1111222 226789999999
Q ss_pred CCchhhhhhHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCC
Q 014942 172 GIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI 239 (415)
Q Consensus 172 G~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~ 239 (415)
|+.. +...+..+++.+|++++|+|+..+.......+...... .+.|+++|+||+|+.
T Consensus 82 G~~~---------f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~--~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVD---------FSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALK--ERVKPVLVINKIDRL 138 (222)
T ss_pred Cccc---------cHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHH--cCCCEEEEEECCCcc
Confidence 9632 33445667899999999999998887666666655544 578999999999985
No 238
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.64 E-value=1.4e-15 Score=140.08 Aligned_cols=157 Identities=24% Similarity=0.306 Sum_probs=96.6
Q ss_pred EEEEEecCCCCHHHHHHHHhCCceeee---eCC---------------CCceEEeEEEE--E---eCCCeeEEEEeCCCC
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQKLSIV---TNK---------------PQTTRHRILGI--C---SGPEYQMILYDTPGI 173 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~~~~~~---~~~---------------~~tt~~~~~~~--~---~~~~~~l~liDtpG~ 173 (415)
+|+++|++|+|||||+++|+....... ... .+.|....... + ......+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 689999999999999999986543321 000 11111111111 1 133578999999995
Q ss_pred chhhhhhHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCC-------hhH---
Q 014942 174 IEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK-------PGE--- 243 (415)
Q Consensus 174 ~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~-------~~~--- 243 (415)
. .+ ...+..++..+|++|+|+|++++.......+...... .+.|+++|+||+|+.. .+.
T Consensus 82 ~--~f-------~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~--~~~p~iiviNK~D~~~~~~~l~~~~~~~~ 150 (213)
T cd04167 82 V--NF-------MDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAIL--EGLPIVLVINKIDRLILELKLPPNDAYFK 150 (213)
T ss_pred c--ch-------HHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHH--cCCCEEEEEECcccCcccccCCHHHHHHH
Confidence 3 22 2334556789999999999988775554444444433 4689999999999851 111
Q ss_pred HHHHHHHHh---hcCC------Cc----cEEEcccCCCCCHH--------HHHHHHHhhCCC
Q 014942 244 IAKKLEWYE---KFTD------VD----EVIPVSAKYGHGVE--------DIRDWILTKLPL 284 (415)
Q Consensus 244 ~~~~~~~~~---~~~~------~~----~i~~vSA~~g~gv~--------eL~~~L~~~l~~ 284 (415)
+.+..+.+. .... +. .+++.||+.|.++. +|++.|.+.+|.
T Consensus 151 l~~~i~~~n~~~~~~~~~~~~~~~p~~~nv~~~s~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 212 (213)
T cd04167 151 LRHIIDEVNNIIASFSTTLSFLFSPENGNVCFASSKFGFCFTLESFAKKYGLVDSIVSNIPS 212 (213)
T ss_pred HHHHHHHHHHHHHHhcCCCceEeccCCCeEEEEecCCCeEEecHHHHhhhhHHHHHHhhCCC
Confidence 111111111 1111 12 37788999988776 777777776653
No 239
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.64 E-value=1.2e-15 Score=126.74 Aligned_cols=156 Identities=19% Similarity=0.188 Sum_probs=113.4
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhcc
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (415)
..+.++|-.++|||||+|.+....+. .....|.......++.+...+.+||.|| +..+..+ |..+.+.
T Consensus 21 mel~lvGLq~sGKtt~Vn~ia~g~~~---edmiptvGfnmrk~tkgnvtiklwD~gG--q~rfrsm-------WerycR~ 88 (186)
T KOG0075|consen 21 MELSLVGLQNSGKTTLVNVIARGQYL---EDMIPTVGFNMRKVTKGNVTIKLWDLGG--QPRFRSM-------WERYCRG 88 (186)
T ss_pred eeEEEEeeccCCcceEEEEEeeccch---hhhcccccceeEEeccCceEEEEEecCC--CccHHHH-------HHHHhhc
Confidence 47999999999999999998765543 3334454445556677888999999999 5555544 5566899
Q ss_pred cceEEEEecCCCCC--chHHHHHHHHhcccC-CCCCEEEEEeCCCCCChhHHHHHHHHHhh---cCCCccEEEcccCCCC
Q 014942 196 ADCIVVLVDACKAP--ERIDEILEEGVGDHK-DKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVSAKYGH 269 (415)
Q Consensus 196 aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~-~~~piilV~NK~Dl~~~~~~~~~~~~~~~---~~~~~~i~~vSA~~g~ 269 (415)
+++++||+|+.++. +....++..++.... .++|+++++||.|+...-.-......+.. ...-..+|.+|++...
T Consensus 89 v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sitdREvcC~siScke~~ 168 (186)
T KOG0075|consen 89 VSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLSSITDREVCCFSISCKEKV 168 (186)
T ss_pred CcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhCccccccceEEEEEEEEcCCc
Confidence 99999999998754 444556666655432 68999999999999765333333333221 1122357999999999
Q ss_pred CHHHHHHHHHhhCC
Q 014942 270 GVEDIRDWILTKLP 283 (415)
Q Consensus 270 gv~eL~~~L~~~l~ 283 (415)
|++.+++||.++..
T Consensus 169 Nid~~~~Wli~hsk 182 (186)
T KOG0075|consen 169 NIDITLDWLIEHSK 182 (186)
T ss_pred cHHHHHHHHHHHhh
Confidence 99999999998653
No 240
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.64 E-value=5e-15 Score=135.26 Aligned_cols=114 Identities=26% Similarity=0.355 Sum_probs=74.2
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEe--CCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhh
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~--~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~ 193 (415)
+.|+++|++|||||||+++|.+.++.. ..+.++......... ..+..+.+|||||+ ..+ ...+..++
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~~~~--t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~--~~~-------~~~~~~~~ 69 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKYRS--TVTSIEPNVATFILNSEGKGKKFRLVDVPGH--PKL-------RDKLLETL 69 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCCC--ccCcEeecceEEEeecCCCCceEEEEECCCC--HHH-------HHHHHHHH
Confidence 369999999999999999999876532 122222222111121 34568999999995 332 22234456
Q ss_pred ccc-ceEEEEecCCCCC---chHHHHHHHHhcc---cCCCCCEEEEEeCCCCCC
Q 014942 194 INA-DCIVVLVDACKAP---ERIDEILEEGVGD---HKDKLPILLVLNKKDLIK 240 (415)
Q Consensus 194 ~~a-D~ii~VvD~~~~~---~~~~~~l~~~l~~---~~~~~piilV~NK~Dl~~ 240 (415)
+.+ +++|||+|+++.. .....++..++.. ...+.|+++|+||+|+..
T Consensus 70 ~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~ 123 (203)
T cd04105 70 KNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT 123 (203)
T ss_pred hccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence 777 9999999998753 2222333333221 125799999999999864
No 241
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.63 E-value=3.2e-15 Score=135.94 Aligned_cols=159 Identities=19% Similarity=0.150 Sum_probs=100.9
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCceee-ee---CCCCceEEeEEEEEe-CCCeeEEEEeCCCCchhhhhhHhHHHHHHHH
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQKLSI-VT---NKPQTTRHRILGICS-GPEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~~~~-~~---~~~~tt~~~~~~~~~-~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~ 190 (415)
.+|+++|.+|||||||+|+|++..... .. ....+|.... .+. .....+.+|||||+... ...... +.+.
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~--~~~~~~~~~l~l~DtpG~~~~-~~~~~~-~l~~-- 75 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRT--PYPHPKFPNVTLWDLPGIGST-AFPPDD-YLEE-- 75 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCce--eeecCCCCCceEEeCCCCCcc-cCCHHH-HHHH--
Confidence 479999999999999999999854321 11 1111222211 111 12347899999997431 111222 2221
Q ss_pred hhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChhH-------------HHHHHHHHhh----
Q 014942 191 SAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE-------------IAKKLEWYEK---- 253 (415)
Q Consensus 191 ~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~-------------~~~~~~~~~~---- 253 (415)
..+..+|++++|.| .++...+..+.+.++. .+.|+++|+||+|+..+.. +....+.+..
T Consensus 76 ~~~~~~d~~l~v~~--~~~~~~d~~~~~~l~~--~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~ 151 (197)
T cd04104 76 MKFSEYDFFIIISS--TRFSSNDVKLAKAIQC--MGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQE 151 (197)
T ss_pred hCccCcCEEEEEeC--CCCCHHHHHHHHHHHH--hCCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHH
Confidence 22568899999864 3466666667766666 5789999999999953211 1112222221
Q ss_pred c-CCCccEEEcccC--CCCCHHHHHHHHHhhCCC
Q 014942 254 F-TDVDEVIPVSAK--YGHGVEDIRDWILTKLPL 284 (415)
Q Consensus 254 ~-~~~~~i~~vSA~--~g~gv~eL~~~L~~~l~~ 284 (415)
. ....++|.+|+. .+.|+..|.+.|...+|.
T Consensus 152 ~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~ 185 (197)
T cd04104 152 AGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPA 185 (197)
T ss_pred cCCCCCCEEEEeCCChhhcChHHHHHHHHHHhhH
Confidence 1 234589999998 689999999999999885
No 242
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.63 E-value=3.5e-15 Score=145.64 Aligned_cols=198 Identities=24% Similarity=0.278 Sum_probs=132.3
Q ss_pred ccEEEEEecCCCCHHHHHHHHhCCceee--------------eeCCCCceEEeEEEE--Ee---CCCeeEEEEeCCCCch
Q 014942 115 SGYVAVLGKPNVGKSTLANQMIGQKLSI--------------VTNKPQTTRHRILGI--CS---GPEYQMILYDTPGIIE 175 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~~~~~~~--------------~~~~~~tt~~~~~~~--~~---~~~~~l~liDtpG~~~ 175 (415)
-.+.+|+-+-..|||||..+|+...... .....|.|....... +. +..+.+.++||||+.+
T Consensus 9 IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVD 88 (603)
T COG0481 9 IRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 88 (603)
T ss_pred ccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccc
Confidence 3478999999999999999997543221 122334443322222 22 2457899999999876
Q ss_pred hhhhhHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHHHHHHHhhcC
Q 014942 176 KKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFT 255 (415)
Q Consensus 176 ~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~ 255 (415)
.++. +.+.+..|.++++|||++++.+.++.. +....+..+.-+|-|+||+||+..+ .+.....+....
T Consensus 89 FsYE---------VSRSLAACEGalLvVDAsQGveAQTlA--N~YlAle~~LeIiPViNKIDLP~Ad-pervk~eIe~~i 156 (603)
T COG0481 89 FSYE---------VSRSLAACEGALLVVDASQGVEAQTLA--NVYLALENNLEIIPVLNKIDLPAAD-PERVKQEIEDII 156 (603)
T ss_pred eEEE---------ehhhHhhCCCcEEEEECccchHHHHHH--HHHHHHHcCcEEEEeeecccCCCCC-HHHHHHHHHHHh
Confidence 4443 233467899999999999998765532 2211222678899999999998532 233333444333
Q ss_pred CC--ccEEEcccCCCCCHHHHHHHHHhhCCCCCCCCCCCCccccCCchhHHHHHHHHHHHH-hhcCCCCCceEEEEEEEE
Q 014942 256 DV--DEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKFQDIVSEHPERFFVGEIIREKIF-MQYRNEVPYACQVNVVSY 332 (415)
Q Consensus 256 ~~--~~i~~vSA~~g~gv~eL~~~L~~~l~~~~~~~~~~~~~~t~~~~~~~i~eiireki~-~~~~~eipys~~v~i~~~ 332 (415)
+. ...+.+||++|.||+++++.|++.+|+.. --+ +.|.+- -+| .++++..|--+.+++..|
T Consensus 157 Gid~~dav~~SAKtG~gI~~iLe~Iv~~iP~P~-g~~-------~~pLkA--------LifDS~yD~Y~GVv~~vRi~dG 220 (603)
T COG0481 157 GIDASDAVLVSAKTGIGIEDVLEAIVEKIPPPK-GDP-------DAPLKA--------LIFDSWYDNYLGVVVLVRIFDG 220 (603)
T ss_pred CCCcchheeEecccCCCHHHHHHHHHhhCCCCC-CCC-------CCcceE--------EEEeccccccceEEEEEEEeec
Confidence 32 35799999999999999999999998632 111 233321 112 356888999999999999
Q ss_pred EecCCCee
Q 014942 333 KTRPTAKD 340 (415)
Q Consensus 333 ~~~~~~~~ 340 (415)
+.+++..+
T Consensus 221 ~ik~gdki 228 (603)
T COG0481 221 TLKKGDKI 228 (603)
T ss_pred eecCCCEE
Confidence 98876543
No 243
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.62 E-value=6.9e-15 Score=142.70 Aligned_cols=185 Identities=22% Similarity=0.272 Sum_probs=119.3
Q ss_pred CccEEEEEecCCCCHHHHHHHHh------CCceeeeeCCCCceE-------------------E-eEEEE----------
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMI------GQKLSIVTNKPQTTR-------------------H-RILGI---------- 157 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~------~~~~~~~~~~~~tt~-------------------~-~~~~~---------- 157 (415)
+...|+|.|.||+|||||+++|. +.++..+...|.+.. . .+...
T Consensus 55 ~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallgd~~r~~~~~~~~~~~~r~~~~~~~l~~~a 134 (332)
T PRK09435 55 NALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFIRPSPSSGTLGGVA 134 (332)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccccchhhhchHhHHHhhcCCCCeEEEecCCcccccchH
Confidence 45689999999999999999874 334444443332221 0 11110
Q ss_pred ---------EeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCC
Q 014942 158 ---------CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP 228 (415)
Q Consensus 158 ---------~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~p 228 (415)
+...++.++|+||+|..+.... ....||++++|++...+..- ..+..- . -...
T Consensus 135 ~~~~~~~~~~~~~g~d~viieT~Gv~qs~~~------------i~~~aD~vlvv~~p~~gd~i--q~~k~g--i--~E~a 196 (332)
T PRK09435 135 RKTRETMLLCEAAGYDVILVETVGVGQSETA------------VAGMVDFFLLLQLPGAGDEL--QGIKKG--I--MELA 196 (332)
T ss_pred HHHHHHHHHHhccCCCEEEEECCCCccchhH------------HHHhCCEEEEEecCCchHHH--HHHHhh--h--hhhh
Confidence 1123568999999998532111 24579999999863332211 111110 1 1223
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHhhcC---------CCccEEEcccCCCCCHHHHHHHHHhhCCCCCCCCCCCCccccC-
Q 014942 229 ILLVLNKKDLIKPGEIAKKLEWYEKFT---------DVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKFQDIVSE- 298 (415)
Q Consensus 229 iilV~NK~Dl~~~~~~~~~~~~~~~~~---------~~~~i~~vSA~~g~gv~eL~~~L~~~l~~~~~~~~~~~~~~t~- 298 (415)
-++|+||+|+............+.... ...+++++||++|.|+++|++.|.+.++ +.+++ +.+++
T Consensus 197 DIiVVNKaDl~~~~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~---~l~~s--g~l~~~ 271 (332)
T PRK09435 197 DLIVINKADGDNKTAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA---ALTAS--GEFAAR 271 (332)
T ss_pred heEEeehhcccchhHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH---HhccC--ChHHHH
Confidence 489999999986443322222222111 1258999999999999999999999876 67777 88887
Q ss_pred --CchhHHHHHHHHHHHHhhcCCCC
Q 014942 299 --HPERFFVGEIIREKIFMQYRNEV 321 (415)
Q Consensus 299 --~~~~~~i~eiireki~~~~~~ei 321 (415)
++.++++.+++|++++..++...
T Consensus 272 r~~~~~~~v~elire~l~~~~~~~~ 296 (332)
T PRK09435 272 RREQQVDWMWEMVEEGLLDRLFADP 296 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCc
Confidence 67888999999999998775433
No 244
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.61 E-value=1e-14 Score=147.82 Aligned_cols=160 Identities=21% Similarity=0.313 Sum_probs=104.7
Q ss_pred ccEEEEEecCCCCHHHHHHHHhCCceee--eeCCCCceEEeEE---------------------------EEEe------
Q 014942 115 SGYVAVLGKPNVGKSTLANQMIGQKLSI--VTNKPQTTRHRIL---------------------------GICS------ 159 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~~~~~~~--~~~~~~tt~~~~~---------------------------~~~~------ 159 (415)
...|+++|+..+|||||+.+|++..... -....+.|.+.-. ..+.
T Consensus 34 ~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (460)
T PTZ00327 34 TINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGHKM 113 (460)
T ss_pred cEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccccc
Confidence 4489999999999999999999753211 0011111110000 0000
Q ss_pred CCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhcccceEEEEecCCCC-CchHHHHHHHHhcccCCCCCEEEEEeCCCC
Q 014942 160 GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKA-PERIDEILEEGVGDHKDKLPILLVLNKKDL 238 (415)
Q Consensus 160 ~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~-~~~~~~~l~~~l~~~~~~~piilV~NK~Dl 238 (415)
.....+.|+||||+ . .+.+.+...+..+|++++|+|+..+ ...+....+..+..+ .-.|+|+|+||+|+
T Consensus 114 ~~~~~i~~IDtPGH--~-------~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~l-gi~~iIVvlNKiDl 183 (460)
T PTZ00327 114 TLKRHVSFVDCPGH--D-------ILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIM-KLKHIIILQNKIDL 183 (460)
T ss_pred cccceEeeeeCCCH--H-------HHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHc-CCCcEEEEEecccc
Confidence 00237899999994 2 2455666667899999999999975 444444444443331 22468999999999
Q ss_pred CChhHHHHHHHHHhhc-----CCCccEEEcccCCCCCHHHHHHHHHhhCCC
Q 014942 239 IKPGEIAKKLEWYEKF-----TDVDEVIPVSAKYGHGVEDIRDWILTKLPL 284 (415)
Q Consensus 239 ~~~~~~~~~~~~~~~~-----~~~~~i~~vSA~~g~gv~eL~~~L~~~l~~ 284 (415)
.+.....+..+.+... ....+++++||++|.|++.|++.|.+.++.
T Consensus 184 v~~~~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~ 234 (460)
T PTZ00327 184 VKEAQAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIPI 234 (460)
T ss_pred cCHHHHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCCC
Confidence 8655444433333321 235689999999999999999999987765
No 245
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.60 E-value=3.9e-14 Score=122.89 Aligned_cols=158 Identities=23% Similarity=0.270 Sum_probs=116.0
Q ss_pred CCccEEEEEecCCCCHHHHHHHHhCCceeee-------eCC--CCceEEeEEEEEeCC-CeeEEEEeCCCCchhhhhhHh
Q 014942 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIV-------TNK--PQTTRHRILGICSGP-EYQMILYDTPGIIEKKIHMLD 182 (415)
Q Consensus 113 ~~~~~V~ivG~~~vGKSSLln~l~~~~~~~~-------~~~--~~tt~~~~~~~~~~~-~~~l~liDtpG~~~~~~~~l~ 182 (415)
.+..+|+|.|+.++||||++.++.......+ +.. ..||...-.+.+... +..+.++|||| |.+++-+
T Consensus 8 ~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPG--q~RF~fm- 84 (187)
T COG2229 8 MIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPG--QERFKFM- 84 (187)
T ss_pred ccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCC--cHHHHHH-
Confidence 4567999999999999999999987764222 111 124433333334443 47999999999 5666544
Q ss_pred HHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCC-CCEEEEEeCCCCCChhHHHHHHHHHhhcCCCccEE
Q 014942 183 SMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDK-LPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVI 261 (415)
Q Consensus 183 ~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~-~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~ 261 (415)
+.-+.+.++.+|+++|++.+.......+.+.+.. .+ .|+++++||.|+.+....+.+.+.+.......+++
T Consensus 85 ------~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~--~~~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~~~~~vi 156 (187)
T COG2229 85 ------WEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTS--RNPIPVVVAINKQDLFDALPPEKIREALKLELLSVPVI 156 (187)
T ss_pred ------HHHHhCCcceEEEEEecCCCcchHHHHHHHHHhh--ccCCCEEEEeeccccCCCCCHHHHHHHHHhccCCCcee
Confidence 3344788999999999998876555566666655 44 99999999999987666666556555543345899
Q ss_pred EcccCCCCCHHHHHHHHHhh
Q 014942 262 PVSAKYGHGVEDIRDWILTK 281 (415)
Q Consensus 262 ~vSA~~g~gv~eL~~~L~~~ 281 (415)
+++|..+.|+.+.++.|...
T Consensus 157 ~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 157 EIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred eeecccchhHHHHHHHHHhh
Confidence 99999999999999998877
No 246
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.60 E-value=2.2e-14 Score=130.68 Aligned_cols=140 Identities=17% Similarity=0.217 Sum_probs=87.9
Q ss_pred EEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceE-EeEEEEEe-------CCCeeEEEEeCCCCchhhhhhHhHHHHHH
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTR-HRILGICS-------GPEYQMILYDTPGIIEKKIHMLDSMMMKN 188 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~-~~~~~~~~-------~~~~~l~liDtpG~~~~~~~~l~~~~~~~ 188 (415)
+|+++|.++||||||++++++..+.. ....|.. ......+. ...+.+.+|||+| ++.+..+.
T Consensus 2 KIvlvGd~gVGKTSLi~~~~~~~f~~--~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG--~e~~~~l~------ 71 (202)
T cd04102 2 RVLVVGDSGVGKSSLVHLICKNQVLG--RPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGG--SESVKSTR------ 71 (202)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCC--CCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCC--chhHHHHH------
Confidence 79999999999999999999887642 2222221 11111111 2346789999999 45554443
Q ss_pred HHhhhcccceEEEEecCCCCC--chHHHHHHHHhcc-------------------cCCCCCEEEEEeCCCCCChhHHHH-
Q 014942 189 VRSAGINADCIVVLVDACKAP--ERIDEILEEGVGD-------------------HKDKLPILLVLNKKDLIKPGEIAK- 246 (415)
Q Consensus 189 ~~~~~~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~-------------------~~~~~piilV~NK~Dl~~~~~~~~- 246 (415)
..+++.+|++|+|+|.++.. ..+..|+.+.... ...+.|++||+||+|+.+.+.+..
T Consensus 72 -~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~ 150 (202)
T cd04102 72 -AVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGN 150 (202)
T ss_pred -HHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchH
Confidence 34488999999999998764 4455565555431 114689999999999975432211
Q ss_pred ----HHHHHhhcCCCccEEEcccCCC
Q 014942 247 ----KLEWYEKFTDVDEVIPVSAKYG 268 (415)
Q Consensus 247 ----~~~~~~~~~~~~~i~~vSA~~g 268 (415)
....+....+. +.+..++..+
T Consensus 151 ~~~~~~~~ia~~~~~-~~i~~~c~~~ 175 (202)
T cd04102 151 LVLTARGFVAEQGNA-EEINLNCTNG 175 (202)
T ss_pred HHhhHhhhHHHhcCC-ceEEEecCCc
Confidence 12233333333 4566666544
No 247
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.59 E-value=1.4e-14 Score=146.93 Aligned_cols=148 Identities=21% Similarity=0.250 Sum_probs=97.2
Q ss_pred ccEEEEEecCCCCHHHHHHHHhCCcee------------------------ee------eCCCCceEEeEEEEEeCCCee
Q 014942 115 SGYVAVLGKPNVGKSTLANQMIGQKLS------------------------IV------TNKPQTTRHRILGICSGPEYQ 164 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~~~~~~------------------------~~------~~~~~tt~~~~~~~~~~~~~~ 164 (415)
...|+++|+.++|||||+.+|+...-. .+ ....+.|.+.....+...+..
T Consensus 7 ~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~~~ 86 (447)
T PLN00043 7 HINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYY 86 (447)
T ss_pred eEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCCEE
Confidence 347999999999999999998632110 00 112244555545556778889
Q ss_pred EEEEeCCCCchhhhhhHhHHHHHHHHhhhcccceEEEEecCCCCC-c------hHHHHHHHHhcccCCCCC-EEEEEeCC
Q 014942 165 MILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP-E------RIDEILEEGVGDHKDKLP-ILLVLNKK 236 (415)
Q Consensus 165 l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~-~------~~~~~l~~~l~~~~~~~p-iilV~NK~ 236 (415)
+.++||||+ .. +...+..++..+|++|+|+|+..+. + .+....+.++.. .++| +|+++||+
T Consensus 87 i~liDtPGh--~d-------f~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~--~gi~~iIV~vNKm 155 (447)
T PLN00043 87 CTVIDAPGH--RD-------FIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFT--LGVKQMICCCNKM 155 (447)
T ss_pred EEEEECCCH--HH-------HHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHH--cCCCcEEEEEEcc
Confidence 999999994 32 4455666788999999999998763 1 344444444444 5664 78899999
Q ss_pred CCCCh----hHH----HHHHHHHhhcC---CCccEEEcccCCCCCHHH
Q 014942 237 DLIKP----GEI----AKKLEWYEKFT---DVDEVIPVSAKYGHGVED 273 (415)
Q Consensus 237 Dl~~~----~~~----~~~~~~~~~~~---~~~~i~~vSA~~g~gv~e 273 (415)
|+... ... .+....+.... ...+++++||++|.|+.+
T Consensus 156 D~~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 156 DATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred cCCchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 98621 112 22222233222 125799999999999853
No 248
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.58 E-value=5.3e-15 Score=159.10 Aligned_cols=215 Identities=20% Similarity=0.219 Sum_probs=130.3
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCCC---------------CceEEeEEE--E--EeCCCeeEEEEeCCCCc
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKP---------------QTTRHRILG--I--CSGPEYQMILYDTPGII 174 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~---------------~tt~~~~~~--~--~~~~~~~l~liDtpG~~ 174 (415)
+-..|+++|+.++|||||+++|+.....+..... +.|...... . ....+..++|+||||+.
T Consensus 19 ~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 98 (731)
T PRK07560 19 QIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHV 98 (731)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCcc
Confidence 4458999999999999999999754322111111 112111111 1 13356789999999974
Q ss_pred hhhhhhHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCCh------hHHHH--
Q 014942 175 EKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP------GEIAK-- 246 (415)
Q Consensus 175 ~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~------~~~~~-- 246 (415)
+ +...+..++..+|++|+|+|+..+....+..++..... .+.|.|+++||+|+... ..+..
T Consensus 99 d---------f~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~--~~~~~iv~iNK~D~~~~~~~~~~~~~~~~~ 167 (731)
T PRK07560 99 D---------FGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALR--ERVKPVLFINKVDRLIKELKLTPQEMQQRL 167 (731)
T ss_pred C---------hHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHH--cCCCeEEEEECchhhcccccCCHHHHHHHH
Confidence 3 23445667889999999999998887777777766544 46788999999998621 11111
Q ss_pred ---------HHHHHhh---------cCCCccEEEcccCCCCCHH----------------------------------HH
Q 014942 247 ---------KLEWYEK---------FTDVDEVIPVSAKYGHGVE----------------------------------DI 274 (415)
Q Consensus 247 ---------~~~~~~~---------~~~~~~i~~vSA~~g~gv~----------------------------------eL 274 (415)
....+.. ......++..||..+.|+. .|
T Consensus 168 ~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~~l~~~~Pv~~~L 247 (731)
T PRK07560 168 LKIIKDVNKLIKGMAPEEFKEKWKVDVEDGTVAFGSALYNWAISVPMMQKTGIKFKDIIDYYEKGKQKELAEKAPLHEVV 247 (731)
T ss_pred HHHHHHHHHHHHHhhhhhhhcceeecCCCCcEeeeecccccceeHHHHHHhCCCHHHHHHHHhcCCHHHHHhhccchhHH
Confidence 1111110 0111346778999887775 78
Q ss_pred HHHHHhhCCCCCCCC----CCC-----Cc-----cccCCchhHHHHHHHHHHHHhhcCCCCCceEEEEEEEEEecCCCee
Q 014942 275 RDWILTKLPLGPAYY----PKF-----QD-----IVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTRPTAKD 340 (415)
Q Consensus 275 ~~~L~~~l~~~~~~~----~~~-----~~-----~~t~~~~~~~i~eiireki~~~~~~eipys~~v~i~~~~~~~~~~~ 340 (415)
++.|.+.+|...... +.+ .+ ..+..+...+++.++ |++ ..+..|..+.+++.+|+.+.+..+
T Consensus 248 ld~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~Vf--K~~--~d~~~G~va~~RV~sGtL~~Gd~v 323 (731)
T PRK07560 248 LDMVVKHLPNPIEAQKYRIPKIWKGDLNSEVGKAMLNCDPNGPLVMMVT--DII--VDPHAGEVATGRVFSGTLRKGQEV 323 (731)
T ss_pred HHHHHHhCCChhhhhhhcccccccCCCCccccceeeccCCCCCEEEEEE--eeE--EcCCCCeEEEEEEEEeEEcCCCEE
Confidence 999999998642110 000 00 000112222233333 222 256778889999999999887666
Q ss_pred EEE
Q 014942 341 FIQ 343 (415)
Q Consensus 341 ~i~ 343 (415)
++.
T Consensus 324 ~~~ 326 (731)
T PRK07560 324 YLV 326 (731)
T ss_pred EEc
Confidence 544
No 249
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.58 E-value=6.7e-14 Score=128.90 Aligned_cols=160 Identities=24% Similarity=0.255 Sum_probs=102.8
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeC-CCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhc
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG-PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~-~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (415)
.+|+++|.+|||||||+++|.+..+.................... ....+.+|||+| +..++.+ +..++.
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~g--q~~~~~~-------~~~y~~ 76 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAG--QEEYRSL-------RPEYYR 76 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCC--HHHHHHH-------HHHHhc
Confidence 689999999999999999999988753222111112222222222 156799999999 4444433 445579
Q ss_pred ccceEEEEecCCCCC--chHHHHHHHHhcccC-CCCCEEEEEeCCCCCChhHHHHH--------------HHHHhhc-CC
Q 014942 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHK-DKLPILLVLNKKDLIKPGEIAKK--------------LEWYEKF-TD 256 (415)
Q Consensus 195 ~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~-~~~piilV~NK~Dl~~~~~~~~~--------------~~~~~~~-~~ 256 (415)
.++++++|+|.+... ......+...+.... ...|+++|+||+|+......... ....... ..
T Consensus 77 ~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (219)
T COG1100 77 GANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVA 156 (219)
T ss_pred CCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhc
Confidence 999999999987532 333333333333322 36899999999999865321110 0000011 01
Q ss_pred CccEEEcccC--CCCCHHHHHHHHHhhCCC
Q 014942 257 VDEVIPVSAK--YGHGVEDIRDWILTKLPL 284 (415)
Q Consensus 257 ~~~i~~vSA~--~g~gv~eL~~~L~~~l~~ 284 (415)
...++.+||+ ++.|+.+++..+...+..
T Consensus 157 ~~~~~~~s~~~~~~~~v~~~~~~~~~~~~~ 186 (219)
T COG1100 157 NPALLETSAKSLTGPNVNELFKELLRKLLE 186 (219)
T ss_pred ccceeEeecccCCCcCHHHHHHHHHHHHHH
Confidence 2238999999 999999999999887753
No 250
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.57 E-value=4.1e-15 Score=145.93 Aligned_cols=170 Identities=21% Similarity=0.224 Sum_probs=122.4
Q ss_pred ccccCCCCCCccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHH
Q 014942 105 FDYASHPNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSM 184 (415)
Q Consensus 105 ~~~~~~~~~~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~ 184 (415)
++..|..+...+.++|+|.||||||||+|.+...... +.+++.||+....+.+.+.-..+.++||||+.+.+....+..
T Consensus 158 l~rlPsIDp~trTlllcG~PNVGKSSf~~~vtradve-vqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~I 236 (620)
T KOG1490|consen 158 LSRLPAIDPNTRTLLVCGYPNVGKSSFNNKVTRADDE-VQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNII 236 (620)
T ss_pred HhcCCCCCCCcCeEEEecCCCCCcHhhcccccccccc-cCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHH
Confidence 3455655677789999999999999999998877765 789999999888888877777899999999987665544444
Q ss_pred HHHHHHhhhcccceEEEEecCCCCC----chHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHH----HHHHHhhcCC
Q 014942 185 MMKNVRSAGINADCIVVLVDACKAP----ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK----KLEWYEKFTD 256 (415)
Q Consensus 185 ~~~~~~~~~~~aD~ii~VvD~~~~~----~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~----~~~~~~~~~~ 256 (415)
.+..+......-.+|+|++|.+... ..+. .+..-++.+..++|.|+|+||+|+..++++.+ ..+.+... +
T Consensus 237 EmqsITALAHLraaVLYfmDLSe~CGySva~Qv-kLfhsIKpLFaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~-~ 314 (620)
T KOG1490|consen 237 EMQIITALAHLRSAVLYFMDLSEMCGYSVAAQV-KLYHSIKPLFANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDD-G 314 (620)
T ss_pred HHHHHHHHHHhhhhheeeeechhhhCCCHHHHH-HHHHHhHHHhcCCceEEEeecccccCccccCHHHHHHHHHHHhc-c
Confidence 4443333344456789999998654 2222 23333444447899999999999987655433 33333333 3
Q ss_pred CccEEEcccCCCCCHHHHHHH
Q 014942 257 VDEVIPVSAKYGHGVEDIRDW 277 (415)
Q Consensus 257 ~~~i~~vSA~~g~gv~eL~~~ 277 (415)
..+++.+|+.+.+||-++...
T Consensus 315 ~v~v~~tS~~~eegVm~Vrt~ 335 (620)
T KOG1490|consen 315 NVKVVQTSCVQEEGVMDVRTT 335 (620)
T ss_pred CceEEEecccchhceeeHHHH
Confidence 358999999999998775443
No 251
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=3.6e-15 Score=125.33 Aligned_cols=156 Identities=18% Similarity=0.185 Sum_probs=103.1
Q ss_pred EEEEEecCCCCHHHHHHHHhCCceeee-eCCCCceEEeEEEEEe---------CCCeeEEEEeCCCCchhhhhhHhHHHH
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQKLSIV-TNKPQTTRHRILGICS---------GPEYQMILYDTPGIIEKKIHMLDSMMM 186 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~~~~~~-~~~~~tt~~~~~~~~~---------~~~~~l~liDtpG~~~~~~~~l~~~~~ 186 (415)
+...+|.+||||||++.++...++... -...+........++. .....+.+|||+| ++.++++...+
T Consensus 11 kfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAG--QERFRSLTTAF- 87 (219)
T KOG0081|consen 11 KFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAG--QERFRSLTTAF- 87 (219)
T ss_pred HHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeecccc--HHHHHHHHHHH-
Confidence 567889999999999999987765310 0000100000011111 1124688999999 78888775555
Q ss_pred HHHHhhhcccceEEEEecCCCCC--chHHHHHHHHhcc-cCCCCCEEEEEeCCCCCChhHHHHH-HHHHhhcCCCccEEE
Q 014942 187 KNVRSAGINADCIVVLVDACKAP--ERIDEILEEGVGD-HKDKLPILLVLNKKDLIKPGEIAKK-LEWYEKFTDVDEVIP 262 (415)
Q Consensus 187 ~~~~~~~~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~-~~~~~piilV~NK~Dl~~~~~~~~~-~~~~~~~~~~~~i~~ 262 (415)
+++|-..++++|.++.. -....|+.++... +..+.-+++++||+|+.+.+.+.+. ...+....+ .|+|+
T Consensus 88 ------fRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyg-lPYfE 160 (219)
T KOG0081|consen 88 ------FRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYG-LPYFE 160 (219)
T ss_pred ------HHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhC-CCeee
Confidence 78888999999987533 4455566554322 2255669999999999877665433 233444444 49999
Q ss_pred cccCCCCCHHHHHHHHHhhC
Q 014942 263 VSAKYGHGVEDIRDWILTKL 282 (415)
Q Consensus 263 vSA~~g~gv~eL~~~L~~~l 282 (415)
+||-+|.||++..+.|+..+
T Consensus 161 TSA~tg~Nv~kave~Lldlv 180 (219)
T KOG0081|consen 161 TSACTGTNVEKAVELLLDLV 180 (219)
T ss_pred eccccCcCHHHHHHHHHHHH
Confidence 99999999998777776654
No 252
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=3e-14 Score=117.47 Aligned_cols=155 Identities=22% Similarity=0.252 Sum_probs=107.9
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceE---EeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhh
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTR---HRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~---~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~ 192 (415)
.+-.|+|.-|||||.|+..+...++. .+.|.|.. ......+.....++.+|||+| ++.++ ..++++
T Consensus 12 fkyiiigdmgvgkscllhqftekkfm--adcphtigvefgtriievsgqkiklqiwdtag--qerfr-------avtrsy 80 (215)
T KOG0097|consen 12 FKYIIIGDMGVGKSCLLHQFTEKKFM--ADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAG--QERFR-------AVTRSY 80 (215)
T ss_pred EEEEEEccccccHHHHHHHHHHHHHh--hcCCcccceecceeEEEecCcEEEEEEeeccc--HHHHH-------HHHHHH
Confidence 37889999999999999999988874 45554432 122233566677899999999 55554 346777
Q ss_pred hcccceEEEEecCCCCC--chHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHH-HHHHHhhcCCCccEEEcccCCCC
Q 014942 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK-KLEWYEKFTDVDEVIPVSAKYGH 269 (415)
Q Consensus 193 ~~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~-~~~~~~~~~~~~~i~~vSA~~g~ 269 (415)
++.+-..++|+|.+... ..+..|+......-.++..+++++||.|+...+++.. ....+.+..+ ..++++||++|.
T Consensus 81 yrgaagalmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeeng-l~fle~saktg~ 159 (215)
T KOG0097|consen 81 YRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENG-LMFLEASAKTGQ 159 (215)
T ss_pred hccccceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcC-eEEEEecccccC
Confidence 99999999999998654 3344555443322236777999999999986655432 1223333333 368999999999
Q ss_pred CHHHHHHHHHhhC
Q 014942 270 GVEDIRDWILTKL 282 (415)
Q Consensus 270 gv~eL~~~L~~~l 282 (415)
||++.|-.-.+.+
T Consensus 160 nvedafle~akki 172 (215)
T KOG0097|consen 160 NVEDAFLETAKKI 172 (215)
T ss_pred cHHHHHHHHHHHH
Confidence 9999776554443
No 253
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=99.57 E-value=3.8e-15 Score=146.86 Aligned_cols=155 Identities=19% Similarity=0.166 Sum_probs=91.5
Q ss_pred CCCCccccchh--hhhhcCceEEeechhhhhhhhhhhhhhhhhhhhhhhhhccccccCCCCCCCCCCcCCccchhcccCC
Q 014942 12 GSLFPHYSTLT--AYREIKFGFQGRSSSITCRSNEHQSLVLSEKEVQQQKLWSNQREMDLDDGDEMEFDDASSFLSLSEK 89 (415)
Q Consensus 12 ~~~~~~~~~~~--~~~~~~i~~~f~sa~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~ 89 (415)
--|+||.+-.| ||.+++|.|.||||..|.+..+.+...++-..-+....... .-...++|.. ..+....+ ..
T Consensus 216 DLl~~~qr~aWa~YF~~~ni~~vf~SA~~at~~~~~~~~~e~~r~~d~~~~~~~---~~~~~~~d~~-i~r~~~d~--~e 289 (562)
T KOG1424|consen 216 DLLPPEQRVAWAEYFRQNNIPVVFFSALAATEQLESKVLKEDRRSLDGVSRALG---AIFVGEVDLK-IARDKGDG--EE 289 (562)
T ss_pred hcCCHHHHHHHHHHHHhcCceEEEEecccccccccccchhhhhhcccchhhhcc---ccccccchhh-hhhhcccc--cc
Confidence 35899999999 69999999999999987776655322111111111100010 0001111100 00000000 00
Q ss_pred CCcCCCCCChh-hhhhcc-ccCCCCCCc-cEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEE
Q 014942 90 PDRNMASPDDY-EIEEFD-YASHPNHKS-GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMI 166 (415)
Q Consensus 90 ~~~~~~~~~~~-~~~~~~-~~~~~~~~~-~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~ 166 (415)
+.. ++.. ....+. ....+..+. ..|++||.|||||||+||+|.|.+...|+.+||.|++..+..++. .+.
T Consensus 290 ~~~----v~~~~~~s~~~~~~t~~~~~~~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls~---~v~ 362 (562)
T KOG1424|consen 290 IED----VEQLRLISAMEPTPTGERYKDVVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFLSP---SVC 362 (562)
T ss_pred hhh----HHhhhhhhccccCCCCcCCCceeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEcCC---Cce
Confidence 000 0000 000000 011122232 589999999999999999999999999999999999998877766 789
Q ss_pred EEeCCCCchhhhh
Q 014942 167 LYDTPGIIEKKIH 179 (415)
Q Consensus 167 liDtpG~~~~~~~ 179 (415)
++||||+.-.++.
T Consensus 363 LCDCPGLVfPSf~ 375 (562)
T KOG1424|consen 363 LCDCPGLVFPSFS 375 (562)
T ss_pred ecCCCCccccCCC
Confidence 9999999765544
No 254
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=9.7e-15 Score=124.85 Aligned_cols=161 Identities=24% Similarity=0.275 Sum_probs=110.8
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCceee----eeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHh
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQKLSI----VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~~~~----~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~ 191 (415)
..|+|+|..|+|||||+.++-...... ......+|.....+.+...+..+.|||..| ++..+++ +..
T Consensus 18 y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~~~~l~fwdlgG--Qe~lrSl-------w~~ 88 (197)
T KOG0076|consen 18 YSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVCNAPLSFWDLGG--QESLRSL-------WKK 88 (197)
T ss_pred hhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeeccceeEEEEcCC--hHHHHHH-------HHH
Confidence 469999999999999999875432211 112233444444555555577999999999 5443333 666
Q ss_pred hhcccceEEEEecCCCCC--chHHHHHHHHhcc-cCCCCCEEEEEeCCCCCChhHHHHHHHHHh--h--cCCCccEEEcc
Q 014942 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGD-HKDKLPILLVLNKKDLIKPGEIAKKLEWYE--K--FTDVDEVIPVS 264 (415)
Q Consensus 192 ~~~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~-~~~~~piilV~NK~Dl~~~~~~~~~~~~~~--~--~~~~~~i~~vS 264 (415)
++..|++++|+||++++. +.....+..+... ...+.|+++.+||.|+.+.....++...+. . .....++.|||
T Consensus 89 yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~rd~~~~pvS 168 (197)
T KOG0076|consen 89 YYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIPRRDNPFQPVS 168 (197)
T ss_pred HHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcCCccCccccch
Confidence 789999999999998754 2222222222211 126899999999999987655554443333 1 12345789999
Q ss_pred cCCCCCHHHHHHHHHhhCCCC
Q 014942 265 AKYGHGVEDIRDWILTKLPLG 285 (415)
Q Consensus 265 A~~g~gv~eL~~~L~~~l~~~ 285 (415)
|.+|+||++-..|++..++.+
T Consensus 169 al~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 169 ALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred hhhcccHHHHHHHHHHHHhhc
Confidence 999999999999999998865
No 255
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=7.2e-14 Score=115.25 Aligned_cols=158 Identities=19% Similarity=0.180 Sum_probs=114.0
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~ 193 (415)
+..+|+.+|-.++||||++..|.-..... .. . |.......+++.+..+++||..| +.. ....|+.|+
T Consensus 16 KE~~ilmlGLd~aGKTtiLyKLkl~~~~~--~i-p-TvGFnvetVtykN~kfNvwdvGG--qd~-------iRplWrhYy 82 (180)
T KOG0071|consen 16 KEMRILMLGLDAAGKTTILYKLKLGQSVT--TI-P-TVGFNVETVTYKNVKFNVWDVGG--QDK-------IRPLWRHYY 82 (180)
T ss_pred ccceEEEEecccCCceehhhHHhcCCCcc--cc-c-ccceeEEEEEeeeeEEeeeeccC--chh-------hhHHHHhhc
Confidence 46689999999999999999998665421 11 2 22233445677888999999999 433 334478889
Q ss_pred cccceEEEEecCCCCC--chHHHHHHHHhccc-CCCCCEEEEEeCCCCCChhHHHHHHHHHh---hcCCCccEEEcccCC
Q 014942 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYE---KFTDVDEVIPVSAKY 267 (415)
Q Consensus 194 ~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~-~~~~piilV~NK~Dl~~~~~~~~~~~~~~---~~~~~~~i~~vSA~~ 267 (415)
....++|||+|+.++. ++...++...+... ....|+++.+||.|++......++...+. ......-+.|+||.+
T Consensus 83 ~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~~r~~~W~vqp~~a~~ 162 (180)
T KOG0071|consen 83 TGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELERIRDRNWYVQPSCALS 162 (180)
T ss_pred cCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhccccccCCccEeecccccc
Confidence 9999999999987653 44555566555442 25789999999999986544444333332 233445689999999
Q ss_pred CCCHHHHHHHHHhhCCC
Q 014942 268 GHGVEDIRDWILTKLPL 284 (415)
Q Consensus 268 g~gv~eL~~~L~~~l~~ 284 (415)
|.|+.+-+.||.+.+.+
T Consensus 163 gdgL~eglswlsnn~~~ 179 (180)
T KOG0071|consen 163 GDGLKEGLSWLSNNLKE 179 (180)
T ss_pred chhHHHHHHHHHhhccC
Confidence 99999999999987653
No 256
>PTZ00099 rab6; Provisional
Probab=99.56 E-value=2.8e-14 Score=127.36 Aligned_cols=118 Identities=21% Similarity=0.227 Sum_probs=82.8
Q ss_pred EeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhcccceEEEEecCCCC--CchHHHHHHHHhcccCCCCCEEEEEeC
Q 014942 158 CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKA--PERIDEILEEGVGDHKDKLPILLVLNK 235 (415)
Q Consensus 158 ~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~--~~~~~~~l~~~l~~~~~~~piilV~NK 235 (415)
+.....++.||||||. +.+..+ +..+++.||++|+|+|++++ +.....|+..+++....+.|++||+||
T Consensus 24 ~~~~~v~l~iwDt~G~--e~~~~~-------~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK 94 (176)
T PTZ00099 24 LDEGPVRLQLWDTAGQ--ERFRSL-------IPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNK 94 (176)
T ss_pred ECCEEEEEEEEECCCh--HHhhhc-------cHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEEC
Confidence 3445678999999994 444433 33447899999999999874 355556666655443357899999999
Q ss_pred CCCCChhH--HHHHHHHHhhcCCCccEEEcccCCCCCHHHHHHHHHhhCCCCC
Q 014942 236 KDLIKPGE--IAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGP 286 (415)
Q Consensus 236 ~Dl~~~~~--~~~~~~~~~~~~~~~~i~~vSA~~g~gv~eL~~~L~~~l~~~~ 286 (415)
+|+..... ..+....... .+ ..++++||++|.||+++|++|.+.+++.+
T Consensus 95 ~DL~~~~~v~~~e~~~~~~~-~~-~~~~e~SAk~g~nV~~lf~~l~~~l~~~~ 145 (176)
T PTZ00099 95 TDLGDLRKVTYEEGMQKAQE-YN-TMFHETSAKAGHNIKVLFKKIAAKLPNLD 145 (176)
T ss_pred cccccccCCCHHHHHHHHHH-cC-CEEEEEECCCCCCHHHHHHHHHHHHHhcc
Confidence 99964221 1222222222 22 36899999999999999999999987654
No 257
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.55 E-value=1.6e-13 Score=132.88 Aligned_cols=204 Identities=18% Similarity=0.183 Sum_probs=126.2
Q ss_pred ccEEEEEecCCCCHHHHHHHHhCCc------------------------eeeee------CCCCceEEeEEEEEeCCCee
Q 014942 115 SGYVAVLGKPNVGKSTLANQMIGQK------------------------LSIVT------NKPQTTRHRILGICSGPEYQ 164 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~~~~------------------------~~~~~------~~~~tt~~~~~~~~~~~~~~ 164 (415)
..+++++|++++|||||+-+|+-.- ++.+. ...|.|.+.....+..+...
T Consensus 7 h~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k~~ 86 (428)
T COG5256 7 HLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDKYN 86 (428)
T ss_pred ceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCCce
Confidence 3489999999999999999986321 11122 22345555556667777788
Q ss_pred EEEEeCCCCchhhhhhHhHHHHHHHHhhhcccceEEEEecCCCC-------CchHHHHHHHHhcccCCCCCEEEEEeCCC
Q 014942 165 MILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKA-------PERIDEILEEGVGDHKDKLPILLVLNKKD 237 (415)
Q Consensus 165 l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~-------~~~~~~~l~~~l~~~~~~~piilV~NK~D 237 (415)
+.++|+||+.+ +...+.....+||++|+|+|++.+ ...++....-+.+.+ .-..+|+++||+|
T Consensus 87 ~tIiDaPGHrd---------FvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tl-Gi~~lIVavNKMD 156 (428)
T COG5256 87 FTIIDAPGHRD---------FVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTL-GIKQLIVAVNKMD 156 (428)
T ss_pred EEEeeCCchHH---------HHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhc-CCceEEEEEEccc
Confidence 99999999422 445556667899999999999987 344444444444442 2345899999999
Q ss_pred CCChh--HHHHHH---HHHhhcCCC----ccEEEcccCCCCCHHHHHHHHHhhCCCCCCCCCC-C---------CccccC
Q 014942 238 LIKPG--EIAKKL---EWYEKFTDV----DEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPK-F---------QDIVSE 298 (415)
Q Consensus 238 l~~~~--~~~~~~---~~~~~~~~~----~~i~~vSA~~g~gv~eL~~~L~~~l~~~~~~~~~-~---------~~~~t~ 298 (415)
+.+.+ ...++. ..+.+..++ .+++||||.+|.|+.+.- ...||+-.. + ...-.+
T Consensus 157 ~v~wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~s-------~~~pWY~GpTLleaLd~~~~p~~~~d 229 (428)
T COG5256 157 LVSWDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKKS-------ENMPWYKGPTLLEALDQLEPPERPLD 229 (428)
T ss_pred ccccCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccccC-------cCCcCccCChHHHHHhccCCCCCCCC
Confidence 98522 222222 223332222 469999999999987632 122332211 0 011234
Q ss_pred CchhHHHHHHHHHHHHhhcCCCCCceEEEEEEEEEecCCCeeEE
Q 014942 299 HPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTRPTAKDFI 342 (415)
Q Consensus 299 ~~~~~~i~eiireki~~~~~~eipys~~v~i~~~~~~~~~~~~i 342 (415)
.|.+..+.++.+ -..+++...-+++.|..+++..+.+
T Consensus 230 ~Plr~pI~~v~~-------i~~~gtv~vGrVEsG~i~~g~~v~~ 266 (428)
T COG5256 230 KPLRLPIQDVYS-------ISGIGTVPVGRVESGVIKPGQKVTF 266 (428)
T ss_pred CCeEeEeeeEEE-------ecCCceEEEEEEeeeeeccCCEEEE
Confidence 555554544331 1566777777888888777655444
No 258
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.54 E-value=1.7e-14 Score=119.77 Aligned_cols=111 Identities=22% Similarity=0.338 Sum_probs=69.4
Q ss_pred EEEEEecCCCCHHHHHHHHhCCcee---eeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhh
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQKLS---IVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~~~~---~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~ 193 (415)
+|+|+|.+|||||||+++|++.... ......+.+..............+.+||++|. ..+..... ..+
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~--~~~~~~~~-------~~~ 71 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQ--EEFYSQHQ-------FFL 71 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSS--HCHHCTSH-------HHH
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCcc--ceeccccc-------chh
Confidence 6999999999999999999988765 12233333333333334444446899999995 32222211 126
Q ss_pred cccceEEEEecCCCCC--chHHH---HHHHHhcccCCCCCEEEEEeCCC
Q 014942 194 INADCIVVLVDACKAP--ERIDE---ILEEGVGDHKDKLPILLVLNKKD 237 (415)
Q Consensus 194 ~~aD~ii~VvD~~~~~--~~~~~---~l~~~l~~~~~~~piilV~NK~D 237 (415)
..+|++|+|+|.+++. ..... ++... +....+.|+++|+||.|
T Consensus 72 ~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~-~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 72 KKADAVILVYDLSDPESLEYLSQLLKWLKNI-RKRDKNIPIILVGNKSD 119 (119)
T ss_dssp HHSCEEEEEEECCGHHHHHHHHHHHHHHHHH-HHHSSCSEEEEEEE-TC
T ss_pred hcCcEEEEEEcCCChHHHHHHHHHHHHHHHH-HccCCCCCEEEEEeccC
Confidence 7899999999998754 22211 22222 22225699999999998
No 259
>PLN00023 GTP-binding protein; Provisional
Probab=99.54 E-value=9.4e-14 Score=133.17 Aligned_cols=122 Identities=16% Similarity=0.155 Sum_probs=79.8
Q ss_pred CCCCccEEEEEecCCCCHHHHHHHHhCCceeee-eCCCCceEEeEEEEEe-------------CCCeeEEEEeCCCCchh
Q 014942 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIV-TNKPQTTRHRILGICS-------------GPEYQMILYDTPGIIEK 176 (415)
Q Consensus 111 ~~~~~~~V~ivG~~~vGKSSLln~l~~~~~~~~-~~~~~tt~~~~~~~~~-------------~~~~~l~liDtpG~~~~ 176 (415)
+.....+|+++|..|||||||+++|++..+... ..+.+.+.......+. ...+.+.||||+| ++
T Consensus 17 ~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAG--qE 94 (334)
T PLN00023 17 PPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSG--HE 94 (334)
T ss_pred CCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCC--Ch
Confidence 445667999999999999999999998776321 1111212111111111 1245799999999 55
Q ss_pred hhhhHhHHHHHHHHhhhcccceEEEEecCCCCC--chHHHHHHHHhccc------------CCCCCEEEEEeCCCCCCh
Q 014942 177 KIHMLDSMMMKNVRSAGINADCIVVLVDACKAP--ERIDEILEEGVGDH------------KDKLPILLVLNKKDLIKP 241 (415)
Q Consensus 177 ~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~------------~~~~piilV~NK~Dl~~~ 241 (415)
.+..+ +..+++.+|++|+|+|.++.. ..+..|+..+.... ..++|++||+||+||...
T Consensus 95 rfrsL-------~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~ 166 (334)
T PLN00023 95 RYKDC-------RSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPK 166 (334)
T ss_pred hhhhh-------hHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccc
Confidence 55544 334488999999999998743 44445554443321 025899999999999653
No 260
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.54 E-value=2.5e-15 Score=122.72 Aligned_cols=155 Identities=18% Similarity=0.169 Sum_probs=103.0
Q ss_pred EEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEE--EeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhcccc
Q 014942 120 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINAD 197 (415)
Q Consensus 120 ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~--~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD 197 (415)
++|.+++|||.|+-++....+....-......+..... +....+++.+|||+| ++.+++. +..+++++|
T Consensus 2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtag--qerfrsv-------t~ayyrda~ 72 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAG--QERFRSV-------THAYYRDAD 72 (192)
T ss_pred ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccc--hHHHhhh-------hHhhhcccc
Confidence 68999999999998876544431111111111222222 334456899999999 6666655 455689999
Q ss_pred eEEEEecCCCCC--chHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHH-HHHHHHhhcCCCccEEEcccCCCCCHHHH
Q 014942 198 CIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYGHGVEDI 274 (415)
Q Consensus 198 ~ii~VvD~~~~~--~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~i~~vSA~~g~gv~eL 274 (415)
++++++|+.+.. .....|+.++-........+.+++||||+.+.+.+. +.-+.+.+..+ .|++++||++|.||+-.
T Consensus 73 allllydiankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~-ipfmetsaktg~nvd~a 151 (192)
T KOG0083|consen 73 ALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYG-IPFMETSAKTGFNVDLA 151 (192)
T ss_pred eeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHHC-CCceeccccccccHhHH
Confidence 999999997643 556666665544333567789999999997644332 11122222223 38999999999999999
Q ss_pred HHHHHhhCCC
Q 014942 275 RDWILTKLPL 284 (415)
Q Consensus 275 ~~~L~~~l~~ 284 (415)
|-.|.+.+..
T Consensus 152 f~~ia~~l~k 161 (192)
T KOG0083|consen 152 FLAIAEELKK 161 (192)
T ss_pred HHHHHHHHHH
Confidence 9999886644
No 261
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=4.2e-14 Score=148.75 Aligned_cols=235 Identities=20% Similarity=0.192 Sum_probs=154.9
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceee-----ee------------CCCCceEEeEEEEEeCCC-eeEEEEeCCCCch
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI-----VT------------NKPQTTRHRILGICSGPE-YQMILYDTPGIIE 175 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~-----~~------------~~~~tt~~~~~~~~~~~~-~~l~liDtpG~~~ 175 (415)
+..+|+|+||..+|||||..+|+-..-.+ +. ...|.|.......+.+.+ +.+++|||||+.+
T Consensus 9 ~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGHVD 88 (697)
T COG0480 9 RIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGHVD 88 (697)
T ss_pred cceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCccc
Confidence 45589999999999999999997432111 11 112334444444566774 9999999999765
Q ss_pred hhhhhHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChh---HHHH------
Q 014942 176 KKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG---EIAK------ 246 (415)
Q Consensus 176 ~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~---~~~~------ 246 (415)
+...+.++++-+|++|+|+|+..+.+.+.+.+++.... .+.|.++++||+|+...+ .+..
T Consensus 89 ---------Ft~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~--~~vp~i~fiNKmDR~~a~~~~~~~~l~~~l~ 157 (697)
T COG0480 89 ---------FTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADK--YGVPRILFVNKMDRLGADFYLVVEQLKERLG 157 (697)
T ss_pred ---------cHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhh--cCCCeEEEEECccccccChhhhHHHHHHHhC
Confidence 34456677899999999999999999999999988887 899999999999985311 0000
Q ss_pred ------------------------------------------------------------------HHHHHhh-------
Q 014942 247 ------------------------------------------------------------------KLEWYEK------- 253 (415)
Q Consensus 247 ------------------------------------------------------------------~~~~~~~------- 253 (415)
..+.+..
T Consensus 158 ~~~~~v~~pIg~~~~f~g~idl~~~~~~~~~~~~~~~~~~ip~~~~~~~~e~r~~~~e~i~e~de~l~e~yl~g~e~~~~ 237 (697)
T COG0480 158 ANPVPVQLPIGAEEEFEGVIDLVEMKAVAFGDGAKYEWIEIPADLKEIAEEAREKLLEALAEFDEELMEKYLEGEEPTEE 237 (697)
T ss_pred CCceeeeccccCccccCceeEhhhcCeEEEcCCcccceeeCCHHHHhHHHHHHHHHHHHHhhcCHHHHHHHhcCCCccHH
Confidence 0000000
Q ss_pred -----------cCCCccEEEcccCCCCCHHHHHHHHHhhCCCCCCCCCCCCccc--------cCC--chhHHHHHHHHHH
Q 014942 254 -----------FTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKFQDIV--------SEH--PERFFVGEIIREK 312 (415)
Q Consensus 254 -----------~~~~~~i~~vSA~~g~gv~eL~~~L~~~l~~~~~~~~~~~~~~--------t~~--~~~~~i~eiirek 312 (415)
...+.|+++-||.++.|+..|++.+.+.+|.. ...+...... ... .+..+++.++ |
T Consensus 238 ~i~~~i~~~~~~~~~~pvl~gsa~kn~gv~~lLdav~~~lPsP-~e~~~~~g~~~~~~~~~~~~~~~~e~p~~a~vf--K 314 (697)
T COG0480 238 EIKKALRKGTIAGKIVPVLCGSAFKNKGVQPLLDAVVDYLPSP-LDVPPIKGDLDDEIEKAVLRKASDEGPLSALVF--K 314 (697)
T ss_pred HHHHHHHHhhhccceeeEEeeecccCCcHHHHHHHHHHHCCCh-hhcccccccCCccccchhcccCCCCCceEEEEE--E
Confidence 01256788899999999999999999999863 2221100100 001 1122222222 2
Q ss_pred HHhhcCCCCCceEEEEEEEEEecCCCeeEEEEEEEEeeCCceeEEeecCChH
Q 014942 313 IFMQYRNEVPYACQVNVVSYKTRPTAKDFIQVEIVVEKNSQKIILIGKGGKA 364 (415)
Q Consensus 313 i~~~~~~eipys~~v~i~~~~~~~~~~~~i~~~~~~~r~~q~~iiiG~~g~~ 364 (415)
+.. .+.++..+.+++.+++.+.+..+++......+|.++.+.+.|..-..
T Consensus 315 i~~--d~~~g~l~~~RvysGtl~~G~~v~n~~~~~~erv~~l~~~~~~~~~~ 364 (697)
T COG0480 315 IMT--DPFVGKLTFVRVYSGTLKSGSEVLNSTKGKKERVGRLLLMHGNEREE 364 (697)
T ss_pred eEe--cCCCCeEEEEEEeccEEcCCCEEEeCCCCccEEEEEEEEccCCceee
Confidence 322 77888888899999999887666665444445555555555554433
No 262
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.52 E-value=2.4e-13 Score=132.61 Aligned_cols=196 Identities=18% Similarity=0.220 Sum_probs=134.8
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCceee---------------eeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhh
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQKLSI---------------VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHM 180 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~~~~---------------~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~ 180 (415)
..|+|+-+...|||||++.|+.+.-.. .....|.|.-.....+.+.++.++++||||+.+ |.
T Consensus 6 RNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHAD--FG- 82 (603)
T COG1217 6 RNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHAD--FG- 82 (603)
T ss_pred ceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCC--cc-
Confidence 379999999999999999998653211 112234454444455778899999999999643 22
Q ss_pred HhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChh---HHHHHHHHHhh----
Q 014942 181 LDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG---EIAKKLEWYEK---- 253 (415)
Q Consensus 181 l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~---~~~~~~~~~~~---- 253 (415)
..+.+.+.-+|.+++++|+.+++.++...+....-. .+.+-|+|+||+|.+..+ .+.+..+.+-.
T Consensus 83 ------GEVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~--~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~ 154 (603)
T COG1217 83 ------GEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALA--LGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGAT 154 (603)
T ss_pred ------chhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHH--cCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCC
Confidence 234444788999999999999998888877654333 677889999999998543 33444444432
Q ss_pred --cCCCccEEEcccCCC----------CCHHHHHHHHHhhCCCCCCCCCCCCccccCCchhHHHHHHHHHHHHhhcCCCC
Q 014942 254 --FTDVDEVIPVSAKYG----------HGVEDIRDWILTKLPLGPAYYPKFQDIVSEHPERFFVGEIIREKIFMQYRNEV 321 (415)
Q Consensus 254 --~~~~~~i~~vSA~~g----------~gv~eL~~~L~~~l~~~~~~~~~~~~~~t~~~~~~~i~eiireki~~~~~~ei 321 (415)
+..| |++..||+.| .++.-||+.|.+.+|... -.+ +.|..+.+.. .-+.+.+
T Consensus 155 deQLdF-PivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~-~~~-------d~PlQ~qvt~-------Ldyn~y~ 218 (603)
T COG1217 155 DEQLDF-PIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPK-GDL-------DEPLQMQVTQ-------LDYNSYV 218 (603)
T ss_pred hhhCCC-cEEEeeccCceeccCccccccchhHHHHHHHHhCCCCC-CCC-------CCCeEEEEEe-------ecccccc
Confidence 2333 8899999887 368889999999998633 211 2333322221 2346778
Q ss_pred CceEEEEEEEEEecCCC
Q 014942 322 PYACQVNVVSYKTRPTA 338 (415)
Q Consensus 322 pys~~v~i~~~~~~~~~ 338 (415)
|.....++..++.+++.
T Consensus 219 GrIgigRi~~G~vk~~q 235 (603)
T COG1217 219 GRIGIGRIFRGTVKPNQ 235 (603)
T ss_pred ceeEEEEEecCcccCCC
Confidence 88888888888777653
No 263
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.52 E-value=3.5e-13 Score=125.05 Aligned_cols=136 Identities=21% Similarity=0.237 Sum_probs=92.2
Q ss_pred ccEEEEEecCCCCHHHHHHHHhCCc-eeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhh
Q 014942 115 SGYVAVLGKPNVGKSTLANQMIGQK-LSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~~~~-~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~ 193 (415)
...|+++|.+|+|||||+|.|++.. ...+....++ + .+....+.++.++||||.. ..+...+
T Consensus 39 ~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~----i-~i~~~~~~~i~~vDtPg~~------------~~~l~~a 101 (225)
T cd01882 39 PLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP----I-TVVTGKKRRLTFIECPNDI------------NAMIDIA 101 (225)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc----E-EEEecCCceEEEEeCCchH------------HHHHHHH
Confidence 3479999999999999999998752 1112222232 1 1233467789999999842 1223346
Q ss_pred cccceEEEEecCCCCCchHHHHHHHHhcccCCCCCE-EEEEeCCCCCChh-HHHHHHHHH-----hhcCCCccEEEcccC
Q 014942 194 INADCIVVLVDACKAPERIDEILEEGVGDHKDKLPI-LLVLNKKDLIKPG-EIAKKLEWY-----EKFTDVDEVIPVSAK 266 (415)
Q Consensus 194 ~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~pi-ilV~NK~Dl~~~~-~~~~~~~~~-----~~~~~~~~i~~vSA~ 266 (415)
..+|++++|+|++.+....+..+...+.. .+.|. ++|+||+|+.+.. ........+ .....+.+++++||+
T Consensus 102 k~aDvVllviDa~~~~~~~~~~i~~~l~~--~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~ 179 (225)
T cd01882 102 KVADLVLLLIDASFGFEMETFEFLNILQV--HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGI 179 (225)
T ss_pred HhcCEEEEEEecCcCCCHHHHHHHHHHHH--cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeec
Confidence 78999999999998887777777777765 56785 4599999997432 222222222 224456799999999
Q ss_pred CCC
Q 014942 267 YGH 269 (415)
Q Consensus 267 ~g~ 269 (415)
+.-
T Consensus 180 ~~~ 182 (225)
T cd01882 180 VHG 182 (225)
T ss_pred cCC
Confidence 864
No 264
>PTZ00258 GTP-binding protein; Provisional
Probab=99.51 E-value=1.8e-13 Score=135.22 Aligned_cols=90 Identities=24% Similarity=0.216 Sum_probs=70.9
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCC-----------------CeeEEEEeCCCCchh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP-----------------EYQMILYDTPGIIEK 176 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~-----------------~~~l~liDtpG~~~~ 176 (415)
...+|+|+|.||||||||+|+|.+... .++++|+||+++..+.+... ..++.++||||+...
T Consensus 20 ~~~kvgIVG~PNvGKSTLfnaLt~~~~-~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g 98 (390)
T PTZ00258 20 NNLKMGIVGLPNVGKSTTFNALCKQQV-PAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG 98 (390)
T ss_pred CCcEEEEECCCCCChHHHHHHHhcCcc-cccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence 456899999999999999999988775 57899999999888887654 235999999998643
Q ss_pred hhhhHhHHHHHHHHhhhcccceEEEEecCC
Q 014942 177 KIHMLDSMMMKNVRSAGINADCIVVLVDAC 206 (415)
Q Consensus 177 ~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~ 206 (415)
... ...+...+...++.||++++|+|+.
T Consensus 99 a~~--g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 99 ASE--GEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred Ccc--hhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 221 2233445666789999999999984
No 265
>PRK13768 GTPase; Provisional
Probab=99.50 E-value=3.6e-13 Score=127.03 Aligned_cols=121 Identities=29% Similarity=0.368 Sum_probs=78.1
Q ss_pred eEEEEeCCCCchhh-hhhHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHh---cccCCCCCEEEEEeCCCCC
Q 014942 164 QMILYDTPGIIEKK-IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGV---GDHKDKLPILLVLNKKDLI 239 (415)
Q Consensus 164 ~l~liDtpG~~~~~-~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l---~~~~~~~piilV~NK~Dl~ 239 (415)
.+.+|||||..+.. .......+.+..... .++++++|+|++......+......+ .....+.|+++|+||+|+.
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~--~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~ 175 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGS--SKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLL 175 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhc--CCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhc
Confidence 68999999963311 222333333332221 18999999999775544332222111 1112579999999999998
Q ss_pred ChhHHHHHHHH----------------------------HhhcCCCccEEEcccCCCCCHHHHHHHHHhhCCCCC
Q 014942 240 KPGEIAKKLEW----------------------------YEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGP 286 (415)
Q Consensus 240 ~~~~~~~~~~~----------------------------~~~~~~~~~i~~vSA~~g~gv~eL~~~L~~~l~~~~ 286 (415)
+..+....... +.......+++++||+++.|+++|+++|.+.++.+.
T Consensus 176 ~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~~~~ 250 (253)
T PRK13768 176 SEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFCGGE 250 (253)
T ss_pred CchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcCCCC
Confidence 76544333222 222234458999999999999999999999998754
No 266
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.50 E-value=2.5e-14 Score=153.56 Aligned_cols=116 Identities=21% Similarity=0.247 Sum_probs=80.4
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCcee---------eeeC------CCCceEEeE----EEEEeCCCeeEEEEeCCCCc
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLS---------IVTN------KPQTTRHRI----LGICSGPEYQMILYDTPGII 174 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~---------~~~~------~~~tt~~~~----~~~~~~~~~~l~liDtpG~~ 174 (415)
+..+|+++|+.++|||||+++|+...-. ...+ ..+.|.... ...+.+.+.++++|||||+.
T Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~ 97 (720)
T TIGR00490 18 FIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHV 97 (720)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCcc
Confidence 3458999999999999999999742110 0011 122232211 11245678899999999964
Q ss_pred hhhhhhHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCC
Q 014942 175 EKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (415)
Q Consensus 175 ~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~ 240 (415)
+ + ...+..++..+|++|+|+|+..+.......++..... .+.|+++|+||+|+..
T Consensus 98 ~--f-------~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~--~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 98 D--F-------GGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALK--ENVKPVLFINKVDRLI 152 (720)
T ss_pred c--c-------HHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHH--cCCCEEEEEEChhccc
Confidence 3 2 2335566899999999999998876666666655544 5788899999999863
No 267
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.50 E-value=3.8e-14 Score=126.14 Aligned_cols=161 Identities=18% Similarity=0.178 Sum_probs=111.6
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEe---CCCeeEEEEeCCCCchhhhhhHhHHHHHHHH
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS---GPEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~---~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~ 190 (415)
+..+++|||..++|||+|+..+....+. ..+..|-.+.....+. ...+.+.+|||+| ++.++.++..
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp--~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAG--qedYDrlRpl------ 72 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTNAFP--EEYVPTVFDNYSANVTVDDGKPVELGLWDTAG--QEDYDRLRPL------ 72 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccCcCc--ccccCeEEccceEEEEecCCCEEEEeeeecCC--Cccccccccc------
Confidence 4569999999999999999998877664 3444444343333322 4456789999999 5666655421
Q ss_pred hhhcccceEEEEecCCCCC--chHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHH-H------------HHHHHHhhcC
Q 014942 191 SAGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-A------------KKLEWYEKFT 255 (415)
Q Consensus 191 ~~~~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~-~------------~~~~~~~~~~ 255 (415)
.+.++|+++++++..++. ......+...++...++.|+|+|++|.||...... . .....+.+..
T Consensus 73 -sY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~i 151 (198)
T KOG0393|consen 73 -SYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEI 151 (198)
T ss_pred -CCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHh
Confidence 478999999999887654 33333344444555589999999999999743211 1 1112333444
Q ss_pred CCccEEEcccCCCCCHHHHHHHHHhhCCCC
Q 014942 256 DVDEVIPVSAKYGHGVEDIRDWILTKLPLG 285 (415)
Q Consensus 256 ~~~~i~~vSA~~g~gv~eL~~~L~~~l~~~ 285 (415)
+...+++|||++..|+.++|+.-+..+-..
T Consensus 152 ga~~y~EcSa~tq~~v~~vF~~a~~~~l~~ 181 (198)
T KOG0393|consen 152 GAVKYLECSALTQKGVKEVFDEAIRAALRP 181 (198)
T ss_pred CcceeeeehhhhhCCcHHHHHHHHHHHhcc
Confidence 556899999999999999999888766543
No 268
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.48 E-value=7.4e-13 Score=124.30 Aligned_cols=128 Identities=19% Similarity=0.225 Sum_probs=86.5
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhh-hhHhHHHHHHHHhh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI-HMLDSMMMKNVRSA 192 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~-~~l~~~~~~~~~~~ 192 (415)
...+|+++|.+|||||||+|+|++.....++...++|...........+..+.+|||||+.+... ..........+..+
T Consensus 30 ~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~~~ 109 (249)
T cd01853 30 FSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSIKRY 109 (249)
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHHHHH
Confidence 45699999999999999999999998776777777777666666667788999999999864321 11222233334444
Q ss_pred hc--ccceEEEEecCCC-CCchHHHHHHHHhcc-cC--CCCCEEEEEeCCCCCCh
Q 014942 193 GI--NADCIVVLVDACK-APERIDEILEEGVGD-HK--DKLPILLVLNKKDLIKP 241 (415)
Q Consensus 193 ~~--~aD~ii~VvD~~~-~~~~~~~~l~~~l~~-~~--~~~piilV~NK~Dl~~~ 241 (415)
+. ..|+++||...+. .....+..+.+.+.. +. --.++++|+||+|...+
T Consensus 110 l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p 164 (249)
T cd01853 110 LKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPP 164 (249)
T ss_pred HhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCC
Confidence 43 5788888875543 233343334433332 11 12579999999998643
No 269
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.46 E-value=9.3e-13 Score=127.80 Aligned_cols=118 Identities=21% Similarity=0.267 Sum_probs=88.3
Q ss_pred CccEEEEEecCCCCHHHHHHHHh--CCceee-------------ee------CCCCceEEeEEEEEeCCCeeEEEEeCCC
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMI--GQKLSI-------------VT------NKPQTTRHRILGICSGPEYQMILYDTPG 172 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~--~~~~~~-------------~~------~~~~tt~~~~~~~~~~~~~~l~liDtpG 172 (415)
|....+|+-+|.+|||||..+|+ |..+.. .| ...|.......-.+.+.++.++++||||
T Consensus 11 rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPG 90 (528)
T COG4108 11 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPG 90 (528)
T ss_pred hhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCC
Confidence 44579999999999999999986 221110 11 1112222222334678899999999999
Q ss_pred CchhhhhhHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChh
Q 014942 173 IIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG 242 (415)
Q Consensus 173 ~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~ 242 (415)
+.+ | .+.+.+.+-.+|.+|+|+|+..+.+.+...+.+.++. +++|++-++||.|.....
T Consensus 91 HeD--F-------SEDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrl--R~iPI~TFiNKlDR~~rd 149 (528)
T COG4108 91 HED--F-------SEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRL--RDIPIFTFINKLDREGRD 149 (528)
T ss_pred ccc--c-------chhHHHHHHhhheeeEEEecccCccHHHHHHHHHHhh--cCCceEEEeeccccccCC
Confidence 633 2 3445556778999999999999999999999999998 999999999999987543
No 270
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.45 E-value=3.3e-12 Score=122.01 Aligned_cols=128 Identities=16% Similarity=0.238 Sum_probs=80.4
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCceeeeeC--------CCCceE-EeEEEEEeCCC--eeEEEEeCCCCchhhh-----h
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTN--------KPQTTR-HRILGICSGPE--YQMILYDTPGIIEKKI-----H 179 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~~~~~~~--------~~~tt~-~~~~~~~~~~~--~~l~liDtpG~~~~~~-----~ 179 (415)
.+|+++|.+|+|||||+|+|++..+..... ...|+. ......+...+ .++.+|||||+.+... .
T Consensus 5 f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~~ 84 (276)
T cd01850 5 FNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCWK 84 (276)
T ss_pred EEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhHH
Confidence 489999999999999999999988654322 233332 22222333334 5799999999854211 1
Q ss_pred hHhHHHHHHHH------------hhh--cccceEEEEecCCC-CCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHH
Q 014942 180 MLDSMMMKNVR------------SAG--INADCIVVLVDACK-APERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI 244 (415)
Q Consensus 180 ~l~~~~~~~~~------------~~~--~~aD~ii~VvD~~~-~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~ 244 (415)
.+..++..+.. ..+ ..+|+++|+++.+. +....+..+.+.+. .+.|+++|+||+|+....++
T Consensus 85 ~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~---~~v~vi~VinK~D~l~~~e~ 161 (276)
T cd01850 85 PIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLS---KRVNIIPVIAKADTLTPEEL 161 (276)
T ss_pred HHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHh---ccCCEEEEEECCCcCCHHHH
Confidence 11111111111 111 15899999999874 55666555555554 36899999999999876554
Q ss_pred HH
Q 014942 245 AK 246 (415)
Q Consensus 245 ~~ 246 (415)
..
T Consensus 162 ~~ 163 (276)
T cd01850 162 KE 163 (276)
T ss_pred HH
Confidence 43
No 271
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.45 E-value=1.5e-12 Score=109.06 Aligned_cols=163 Identities=21% Similarity=0.222 Sum_probs=111.3
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCC---CeeEEEEeCCCCchhhhhhHhHHHHHHHH
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP---EYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~---~~~l~liDtpG~~~~~~~~l~~~~~~~~~ 190 (415)
+.++|+++|.-+||||+++..|+..+....+....|..+.+...+..+ .-++.|+||.|+... .. +.-+
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~-~~-------eLpr 79 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGG-QQ-------ELPR 79 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCc-hh-------hhhH
Confidence 567999999999999999999987665444444455555554444432 237899999998442 22 2245
Q ss_pred hhhcccceEEEEecCCCCCchH-HHHHHHHhccc--CCCCCEEEEEeCCCCCChhHHHHHHHHHhhcCCCccEEEcccCC
Q 014942 191 SAGINADCIVVLVDACKAPERI-DEILEEGVGDH--KDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKY 267 (415)
Q Consensus 191 ~~~~~aD~ii~VvD~~~~~~~~-~~~l~~~l~~~--~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~ 267 (415)
.++.-+|++++|++..++..-. .+.+...+... ....|+++++||+|+..+..+.......-........++++|..
T Consensus 80 hy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~d 159 (198)
T KOG3883|consen 80 HYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMD 159 (198)
T ss_pred hHhccCceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEecc
Confidence 5688999999999988754221 12222222222 26789999999999976554433322222222345789999999
Q ss_pred CCCHHHHHHHHHhhCCC
Q 014942 268 GHGVEDIRDWILTKLPL 284 (415)
Q Consensus 268 g~gv~eL~~~L~~~l~~ 284 (415)
...+-+.|.+|...+..
T Consensus 160 R~sL~epf~~l~~rl~~ 176 (198)
T KOG3883|consen 160 RPSLYEPFTYLASRLHQ 176 (198)
T ss_pred chhhhhHHHHHHHhccC
Confidence 99999999999987753
No 272
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.45 E-value=4.2e-13 Score=110.90 Aligned_cols=161 Identities=20% Similarity=0.259 Sum_probs=113.3
Q ss_pred CCccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhh
Q 014942 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (415)
Q Consensus 113 ~~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~ 192 (415)
.|..+++++|-.|+|||||+..|.+....-+.+..|... ..+-..+...+++||..|. .. ....|..|
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~sED~~hltpT~GFn~---k~v~~~g~f~LnvwDiGGq--r~-------IRpyWsNY 82 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLKSEDPRHLTPTNGFNT---KKVEYDGTFHLNVWDIGGQ--RG-------IRPYWSNY 82 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHccCChhhccccCCcce---EEEeecCcEEEEEEecCCc--cc-------cchhhhhh
Confidence 467799999999999999999999988754444444332 2222334579999999993 22 22346778
Q ss_pred hcccceEEEEecCCCCC--chHHHHHHHHhcccC-CCCCEEEEEeCCCCCChhHHHHHHHHHh---hcCCCccEEEcccC
Q 014942 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHK-DKLPILLVLNKKDLIKPGEIAKKLEWYE---KFTDVDEVIPVSAK 266 (415)
Q Consensus 193 ~~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~-~~~piilV~NK~Dl~~~~~~~~~~~~~~---~~~~~~~i~~vSA~ 266 (415)
+.+.|.+|||+|+++.. ++..+.+.+++.... ...|+++..||.|++....+++....+. .......+-.+||.
T Consensus 83 yenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRswhIq~csal 162 (185)
T KOG0074|consen 83 YENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECSAL 162 (185)
T ss_pred hhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceEEeeeCccc
Confidence 99999999999976542 444445555554422 5789999999999986544443332221 11234578899999
Q ss_pred CCCCHHHHHHHHHhhCCCC
Q 014942 267 YGHGVEDIRDWILTKLPLG 285 (415)
Q Consensus 267 ~g~gv~eL~~~L~~~l~~~ 285 (415)
+++|+.+-.+|+......+
T Consensus 163 s~eg~~dg~~wv~sn~~~~ 181 (185)
T KOG0074|consen 163 SLEGSTDGSDWVQSNPETG 181 (185)
T ss_pred cccCccCcchhhhcCCCCC
Confidence 9999999999998776543
No 273
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.44 E-value=7.5e-13 Score=107.38 Aligned_cols=142 Identities=20% Similarity=0.250 Sum_probs=101.2
Q ss_pred EEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhccc
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~a 196 (415)
+++++|..|+|||||.++|.|.... +..|. . +.+. .=-.+||||..- . +..+.........++
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~l-----ykKTQ---A--ve~~--d~~~IDTPGEy~---~--~~~~Y~aL~tt~~da 65 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTL-----YKKTQ---A--VEFN--DKGDIDTPGEYF---E--HPRWYHALITTLQDA 65 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhh-----hcccc---e--eecc--CccccCCchhhh---h--hhHHHHHHHHHhhcc
Confidence 7999999999999999999987643 11111 1 1111 112589999421 1 122333444557899
Q ss_pred ceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHHHHHHHhhcCCCccEEEcccCCCCCHHHHHH
Q 014942 197 DCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRD 276 (415)
Q Consensus 197 D~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gv~eL~~ 276 (415)
|++++|-.+.++.....--+... ..+|+|-|++|+|+..+.++.....++.+.+ ..++|.+||..+.|+++|++
T Consensus 66 dvi~~v~~and~~s~f~p~f~~~-----~~k~vIgvVTK~DLaed~dI~~~~~~L~eaG-a~~IF~~s~~d~~gv~~l~~ 139 (148)
T COG4917 66 DVIIYVHAANDPESRFPPGFLDI-----GVKKVIGVVTKADLAEDADISLVKRWLREAG-AEPIFETSAVDNQGVEELVD 139 (148)
T ss_pred ceeeeeecccCccccCCcccccc-----cccceEEEEecccccchHhHHHHHHHHHHcC-CcceEEEeccCcccHHHHHH
Confidence 99999999887755443333322 3467999999999998778877777777655 66999999999999999999
Q ss_pred HHHhh
Q 014942 277 WILTK 281 (415)
Q Consensus 277 ~L~~~ 281 (415)
+|...
T Consensus 140 ~L~~~ 144 (148)
T COG4917 140 YLASL 144 (148)
T ss_pred HHHhh
Confidence 99764
No 274
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.44 E-value=2.5e-13 Score=112.55 Aligned_cols=158 Identities=18% Similarity=0.241 Sum_probs=109.8
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~ 193 (415)
+..++.++|-.|+||||++.++.-.+.. ...|... .....+.+.+.++.+||..|. .+ +...|+.|+
T Consensus 17 ~e~rililgldGaGkttIlyrlqvgevv--ttkPtig--fnve~v~yKNLk~~vwdLggq--tS-------irPyWRcYy 83 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGEVV--TTKPTIG--FNVETVPYKNLKFQVWDLGGQ--TS-------IRPYWRCYY 83 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCccc--ccCCCCC--cCccccccccccceeeEccCc--cc-------ccHHHHHHh
Confidence 6668999999999999999988765553 2333222 122345567889999999993 32 334578889
Q ss_pred cccceEEEEecCCCCC--chHHHHHHHHhcccC-CCCCEEEEEeCCCCCChh---HHHHHHHHHhhcCCCccEEEcccCC
Q 014942 194 INADCIVVLVDACKAP--ERIDEILEEGVGDHK-DKLPILLVLNKKDLIKPG---EIAKKLEWYEKFTDVDEVIPVSAKY 267 (415)
Q Consensus 194 ~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~-~~~piilV~NK~Dl~~~~---~~~~~~~~~~~~~~~~~i~~vSA~~ 267 (415)
.+.|.+|||||+++.. ......+..++.+.. .+..+++++||.|....- ++...+...+.......+|.+||.+
T Consensus 84 ~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~k 163 (182)
T KOG0072|consen 84 ADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTSAVK 163 (182)
T ss_pred cccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeecccc
Confidence 9999999999998754 233344444444421 457789999999986432 2222222222223446899999999
Q ss_pred CCCHHHHHHHHHhhCCC
Q 014942 268 GHGVEDIRDWILTKLPL 284 (415)
Q Consensus 268 g~gv~eL~~~L~~~l~~ 284 (415)
|+|++..++||.+-++.
T Consensus 164 g~Gld~~~DWL~~~l~~ 180 (182)
T KOG0072|consen 164 GEGLDPAMDWLQRPLKS 180 (182)
T ss_pred ccCCcHHHHHHHHHHhc
Confidence 99999999999987754
No 275
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.43 E-value=4.8e-14 Score=140.99 Aligned_cols=161 Identities=18% Similarity=0.179 Sum_probs=109.7
Q ss_pred CCCCccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCC-ceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHH
Q 014942 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQ-TTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNV 189 (415)
Q Consensus 111 ~~~~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~-tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~ 189 (415)
...+..+|+++|..|||||||+.+|+...+.. ..|. ..+..+..-++.+.....++||+.-.+ .. ...
T Consensus 5 ~t~kdVRIvliGD~G~GKtSLImSL~~eef~~--~VP~rl~~i~IPadvtPe~vpt~ivD~ss~~~-~~--------~~l 73 (625)
T KOG1707|consen 5 ETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVD--AVPRRLPRILIPADVTPENVPTSIVDTSSDSD-DR--------LCL 73 (625)
T ss_pred cCccceEEEEECCCCccHHHHHHHHHhhhccc--cccccCCccccCCccCcCcCceEEEecccccc-hh--------HHH
Confidence 34466799999999999999999999988742 2121 111122233444556789999986321 11 123
Q ss_pred HhhhcccceEEEEecCCCCC--chHHHHHHHHhcccC---CCCCEEEEEeCCCCCChhHH--H-HHHHHHhhcCCCccEE
Q 014942 190 RSAGINADCIVVLVDACKAP--ERIDEILEEGVGDHK---DKLPILLVLNKKDLIKPGEI--A-KKLEWYEKFTDVDEVI 261 (415)
Q Consensus 190 ~~~~~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~---~~~piilV~NK~Dl~~~~~~--~-~~~~~~~~~~~~~~i~ 261 (415)
...++.||++++|++.+++. ......|+.+++... .+.|+|+|+||+|....... + .....+.+......++
T Consensus 74 ~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtci 153 (625)
T KOG1707|consen 74 RKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCI 153 (625)
T ss_pred HHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHH
Confidence 34478999999999877643 445556667777655 68999999999999743211 1 1333333344455789
Q ss_pred EcccCCCCCHHHHHHHHHhhC
Q 014942 262 PVSAKYGHGVEDIRDWILTKL 282 (415)
Q Consensus 262 ~vSA~~g~gv~eL~~~L~~~l 282 (415)
.|||++-.++.++|.+-.+.+
T Consensus 154 ecSA~~~~n~~e~fYyaqKaV 174 (625)
T KOG1707|consen 154 ECSALTLANVSELFYYAQKAV 174 (625)
T ss_pred hhhhhhhhhhHhhhhhhhhee
Confidence 999999999999999888765
No 276
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.42 E-value=2.5e-12 Score=122.73 Aligned_cols=132 Identities=18% Similarity=0.247 Sum_probs=87.1
Q ss_pred ccCCCCCCccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHH
Q 014942 107 YASHPNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMM 186 (415)
Q Consensus 107 ~~~~~~~~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~ 186 (415)
..+..+....+|+++|.+||||||++|+|+|.....++...+++...........+..+.+|||||+.+.. .+.....
T Consensus 30 ~l~~~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~--~~~e~~~ 107 (313)
T TIGR00991 30 KLKEEDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGG--YINDQAV 107 (313)
T ss_pred hcccccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchH--HHHHHHH
Confidence 34455567789999999999999999999999877666666655554444445578899999999986432 2222222
Q ss_pred HHHHhhh--cccceEEEEecCCC-CCchHHHHHHHHhccc-C--CCCCEEEEEeCCCCCC
Q 014942 187 KNVRSAG--INADCIVVLVDACK-APERIDEILEEGVGDH-K--DKLPILLVLNKKDLIK 240 (415)
Q Consensus 187 ~~~~~~~--~~aD~ii~VvD~~~-~~~~~~~~l~~~l~~~-~--~~~piilV~NK~Dl~~ 240 (415)
..+..++ ...|++|||..... .....+..+.+.+... . .-.++|+|+|++|...
T Consensus 108 ~~ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~ 167 (313)
T TIGR00991 108 NIIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSP 167 (313)
T ss_pred HHHHHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCC
Confidence 3333222 36899999955432 3444444444433332 1 2357999999999764
No 277
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.42 E-value=1.9e-12 Score=141.31 Aligned_cols=146 Identities=22% Similarity=0.244 Sum_probs=95.9
Q ss_pred CCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCC------------------CeeEEEEeCCCCchhhhhhHhHHHHH
Q 014942 126 VGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP------------------EYQMILYDTPGIIEKKIHMLDSMMMK 187 (415)
Q Consensus 126 vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~------------------~~~l~liDtpG~~~~~~~~l~~~~~~ 187 (415)
++||||+.+|.+.+++. ...-|.|.+.-...+... -..+.|||||| +..+..+.
T Consensus 472 ~~KTtLLD~iR~t~v~~-~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPG--he~F~~lr----- 543 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAK-KEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPG--HEAFTSLR----- 543 (1049)
T ss_pred cccccHHHHHhCCCccc-ccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCC--cHHHHHHH-----
Confidence 44999999999988752 223333433222221111 12489999999 45554432
Q ss_pred HHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChhH------------------HHHH--
Q 014942 188 NVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE------------------IAKK-- 247 (415)
Q Consensus 188 ~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~------------------~~~~-- 247 (415)
...+..+|++++|+|++++...........+.. .+.|+++|+||+|+..... ..+.
T Consensus 544 --~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~--~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~ 619 (1049)
T PRK14845 544 --KRGGSLADLAVLVVDINEGFKPQTIEAINILRQ--YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEI 619 (1049)
T ss_pred --HhhcccCCEEEEEEECcccCCHhHHHHHHHHHH--cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHH
Confidence 223678999999999998877766666666666 5789999999999963110 0111
Q ss_pred -----HHHH-------------hhcCCCccEEEcccCCCCCHHHHHHHHHhhCC
Q 014942 248 -----LEWY-------------EKFTDVDEVIPVSAKYGHGVEDIRDWILTKLP 283 (415)
Q Consensus 248 -----~~~~-------------~~~~~~~~i~~vSA~~g~gv~eL~~~L~~~l~ 283 (415)
...+ ....+..+++++||++|+|+++|+.+|....+
T Consensus 620 ~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~ 673 (1049)
T PRK14845 620 KLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQ 673 (1049)
T ss_pred HHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhH
Confidence 0001 11234568999999999999999998875543
No 278
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.42 E-value=4.2e-12 Score=124.18 Aligned_cols=88 Identities=24% Similarity=0.298 Sum_probs=69.7
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCC-----------------eeEEEEeCCCCchhhh
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE-----------------YQMILYDTPGIIEKKI 178 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~-----------------~~l~liDtpG~~~~~~ 178 (415)
.+|+|+|.||||||||+|+|++.+ ..++++|+||+++..+.+...+ .++.++||||+.....
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~-~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~ 81 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAG-AEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGAS 81 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-CeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCC
Confidence 489999999999999999999988 5688999999988877765444 2589999999964321
Q ss_pred hhHhHHHHHHHHhhhcccceEEEEecCC
Q 014942 179 HMLDSMMMKNVRSAGINADCIVVLVDAC 206 (415)
Q Consensus 179 ~~l~~~~~~~~~~~~~~aD~ii~VvD~~ 206 (415)
. ...+.......++.||++++|+|+.
T Consensus 82 ~--g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 82 K--GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred h--HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 1 2233445666789999999999985
No 279
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.38 E-value=8.6e-12 Score=116.78 Aligned_cols=166 Identities=17% Similarity=0.207 Sum_probs=109.8
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCcee-----------eeeCCCCceEE-----------eEEEEEeCC------CeeE
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLS-----------IVTNKPQTTRH-----------RILGICSGP------EYQM 165 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~-----------~~~~~~~tt~~-----------~~~~~~~~~------~~~l 165 (415)
...+|+++|+...|||||..+|.|-... +--.+..++.. .....+... -..+
T Consensus 9 p~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~V 88 (415)
T COG5257 9 PEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRRV 88 (415)
T ss_pred cceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEEE
Confidence 4458999999999999999999874211 10011111100 000011111 1268
Q ss_pred EEEeCCCCchhhhhhHhHHHHHHHHhhhcccceEEEEecCCCCC-chHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHH
Q 014942 166 ILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP-ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI 244 (415)
Q Consensus 166 ~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~-~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~ 244 (415)
.|+|.||+ + .++..+.+...-.|++++|+.++.+. +++....+-.+.-. .-+.+|+|-||+|++.++..
T Consensus 89 SfVDaPGH--e-------~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIi-gik~iiIvQNKIDlV~~E~A 158 (415)
T COG5257 89 SFVDAPGH--E-------TLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEII-GIKNIIIVQNKIDLVSRERA 158 (415)
T ss_pred EEeeCCch--H-------HHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhh-ccceEEEEecccceecHHHH
Confidence 89999994 2 24455555566779999999998776 44554443333321 33679999999999987766
Q ss_pred HHHHHHHhhcC-----CCccEEEcccCCCCCHHHHHHHHHhhCCCCCCCC
Q 014942 245 AKKLEWYEKFT-----DVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYY 289 (415)
Q Consensus 245 ~~~~~~~~~~~-----~~~~i~~vSA~~g~gv~eL~~~L~~~l~~~~~~~ 289 (415)
.+..+++++.. ...|++|+||..+.|++.|+++|.+.+|..+...
T Consensus 159 lE~y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~rd~ 208 (415)
T COG5257 159 LENYEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTPERDL 208 (415)
T ss_pred HHHHHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCCccCC
Confidence 55555554432 3469999999999999999999999998754433
No 280
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.37 E-value=1.4e-13 Score=118.14 Aligned_cols=159 Identities=17% Similarity=0.190 Sum_probs=104.7
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeee-eCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIV-TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~-~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~ 192 (415)
+..+++|+|..+|||||++.+++..-+..- ....++..-.-...+...+..+.+|||+| ++.++.+ +..|
T Consensus 19 ~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtag--qeEfDaI-------tkAy 89 (246)
T KOG4252|consen 19 RAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAG--QEEFDAI-------TKAY 89 (246)
T ss_pred hhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhcc--chhHHHH-------HHHH
Confidence 456999999999999999999996544210 01111110000111334556788999999 5665544 5567
Q ss_pred hcccceEEEEecCCCCC--chHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHHHH-HHHhhcCCCccEEEcccCCCC
Q 014942 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKL-EWYEKFTDVDEVIPVSAKYGH 269 (415)
Q Consensus 193 ~~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~~~-~~~~~~~~~~~i~~vSA~~g~ 269 (415)
+++|.+.++|+..++.. +....|....... ...+|.++|-||+|++....+..-. +-+.+.. ...++.+|++...
T Consensus 90 yrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e-~~~IPtV~vqNKIDlveds~~~~~evE~lak~l-~~RlyRtSvked~ 167 (246)
T KOG4252|consen 90 YRGAQASVLVFSTTDRYSFEATLEWYNKVQKE-TERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKL-HKRLYRTSVKEDF 167 (246)
T ss_pred hccccceEEEEecccHHHHHHHHHHHHHHHHH-hccCCeEEeeccchhhHhhhcchHHHHHHHHHh-hhhhhhhhhhhhh
Confidence 89999999999887654 4444444444333 2679999999999998654332111 1111111 2367899999999
Q ss_pred CHHHHHHHHHhhCC
Q 014942 270 GVEDIRDWILTKLP 283 (415)
Q Consensus 270 gv~eL~~~L~~~l~ 283 (415)
||..+|.+|++.+.
T Consensus 168 NV~~vF~YLaeK~~ 181 (246)
T KOG4252|consen 168 NVMHVFAYLAEKLT 181 (246)
T ss_pred hhHHHHHHHHHHHH
Confidence 99999999987653
No 281
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.37 E-value=9e-12 Score=121.76 Aligned_cols=156 Identities=19% Similarity=0.153 Sum_probs=122.5
Q ss_pred EEEEEecCCCCHHHHHHHHhCCcee--eeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhc
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQKLS--IVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~~~~--~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (415)
.|+..|+-..|||||+.++.|..-. .-..+.|+|.+.-......++..+.|+|+||+.. +...+...+.
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~---------~i~~miag~~ 72 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPD---------FISNLLAGLG 72 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHH---------HHHHHHhhhc
Confidence 4788999999999999999986532 2346778898887777888888999999999632 3445556678
Q ss_pred ccceEEEEecCCCCCchHHHHHHHHhcccCCCCC-EEEEEeCCCCCChhHHHHHHHHHhhc--CCCccEEEcccCCCCCH
Q 014942 195 NADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKDLIKPGEIAKKLEWYEKF--TDVDEVIPVSAKYGHGV 271 (415)
Q Consensus 195 ~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~p-iilV~NK~Dl~~~~~~~~~~~~~~~~--~~~~~i~~vSA~~g~gv 271 (415)
..|.+++|||+.++...++.+.+..++. .+++ .++|+||+|+.+...++.....+... ....++|.+||.+|.||
T Consensus 73 ~~d~alLvV~~deGl~~qtgEhL~iLdl--lgi~~giivltk~D~~d~~r~e~~i~~Il~~l~l~~~~i~~~s~~~g~GI 150 (447)
T COG3276 73 GIDYALLVVAADEGLMAQTGEHLLILDL--LGIKNGIIVLTKADRVDEARIEQKIKQILADLSLANAKIFKTSAKTGRGI 150 (447)
T ss_pred CCceEEEEEeCccCcchhhHHHHHHHHh--cCCCceEEEEeccccccHHHHHHHHHHHHhhcccccccccccccccCCCH
Confidence 8999999999999998888777777766 4444 59999999999876555544443332 23457899999999999
Q ss_pred HHHHHHHHhhCC
Q 014942 272 EDIRDWILTKLP 283 (415)
Q Consensus 272 ~eL~~~L~~~l~ 283 (415)
++|.+.|.+...
T Consensus 151 ~~Lk~~l~~L~~ 162 (447)
T COG3276 151 EELKNELIDLLE 162 (447)
T ss_pred HHHHHHHHHhhh
Confidence 999999998883
No 282
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.36 E-value=5.9e-12 Score=119.30 Aligned_cols=149 Identities=21% Similarity=0.186 Sum_probs=100.2
Q ss_pred ccEEEEEecCCCCHHHHHHHHhCCceeee--------------------------------eCCCCceEEeEEEEEeCCC
Q 014942 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIV--------------------------------TNKPQTTRHRILGICSGPE 162 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~~~~~~~~--------------------------------~~~~~tt~~~~~~~~~~~~ 162 (415)
..+++.+|...-|||||+-+|+....++. ....|.|.+.....+....
T Consensus 6 lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT~K 85 (431)
T COG2895 6 LLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFSTEK 85 (431)
T ss_pred ceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccccc
Confidence 34899999999999999999986543320 1122456666666677788
Q ss_pred eeEEEEeCCCCchhhhhhHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChh
Q 014942 163 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG 242 (415)
Q Consensus 163 ~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~ 242 (415)
.+|++.||||+.+ +.+++.....-||++|+++|+..+...+.....-+...+ .=..+++++||+||.+..
T Consensus 86 RkFIiADTPGHeQ---------YTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLL-GIrhvvvAVNKmDLvdy~ 155 (431)
T COG2895 86 RKFIIADTPGHEQ---------YTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLL-GIRHVVVAVNKMDLVDYS 155 (431)
T ss_pred ceEEEecCCcHHH---------HhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHh-CCcEEEEEEeeecccccC
Confidence 8999999999532 344455556789999999999988865554332222221 224589999999998632
Q ss_pred --HHHHHHHH---HhhcCC--CccEEEcccCCCCCHHH
Q 014942 243 --EIAKKLEW---YEKFTD--VDEVIPVSAKYGHGVED 273 (415)
Q Consensus 243 --~~~~~~~~---~~~~~~--~~~i~~vSA~~g~gv~e 273 (415)
....+... +....+ ...++|+||..|.||-.
T Consensus 156 e~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~ 193 (431)
T COG2895 156 EEVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVVS 193 (431)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcceEEechhccCCcccc
Confidence 22222222 222222 23689999999999854
No 283
>PTZ00416 elongation factor 2; Provisional
Probab=99.35 E-value=6.3e-12 Score=136.87 Aligned_cols=115 Identities=20% Similarity=0.224 Sum_probs=83.0
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceE---------------EeEEEEEeC----------CCeeEEEE
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTR---------------HRILGICSG----------PEYQMILY 168 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~---------------~~~~~~~~~----------~~~~l~li 168 (415)
+..+|+|+|+.++|||||+++|+.....+.....++++ ......+.+ .+..++|+
T Consensus 18 ~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~li 97 (836)
T PTZ00416 18 QIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLI 97 (836)
T ss_pred CcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEE
Confidence 44489999999999999999998644322112222221 111111122 25679999
Q ss_pred eCCCCchhhhhhHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCC
Q 014942 169 DTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI 239 (415)
Q Consensus 169 DtpG~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~ 239 (415)
||||+.+ +...+..+++.+|++|+|+|+..+....++.+++.+.. .++|+++++||+|+.
T Consensus 98 DtPG~~~---------f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~--~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 98 DSPGHVD---------FSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQ--ERIRPVLFINKVDRA 157 (836)
T ss_pred cCCCHHh---------HHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHH--cCCCEEEEEEChhhh
Confidence 9999633 34456677899999999999999988888888777766 678999999999997
No 284
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.33 E-value=8.8e-12 Score=136.00 Aligned_cols=115 Identities=23% Similarity=0.239 Sum_probs=82.7
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCc---------------eEEeEEEEEe----------------CCC
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQT---------------TRHRILGICS----------------GPE 162 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~t---------------t~~~~~~~~~----------------~~~ 162 (415)
+-.+|+|+|+.++|||||+++|+.....+.....++ |.......+. ..+
T Consensus 18 ~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
T PLN00116 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGNE 97 (843)
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCCc
Confidence 455899999999999999999986543211111211 2111111111 136
Q ss_pred eeEEEEeCCCCchhhhhhHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCC
Q 014942 163 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI 239 (415)
Q Consensus 163 ~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~ 239 (415)
..++|+||||+.+ +...+..+++.+|++|+|+|+..+....++.+++.+.. .++|+++++||+|+.
T Consensus 98 ~~inliDtPGh~d---------F~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~--~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 98 YLINLIDSPGHVD---------FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALG--ERIRPVLTVNKMDRC 163 (843)
T ss_pred eEEEEECCCCHHH---------HHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHH--CCCCEEEEEECCccc
Confidence 6889999999532 34455667899999999999999988888777777666 789999999999997
No 285
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.33 E-value=5.3e-12 Score=118.34 Aligned_cols=159 Identities=23% Similarity=0.191 Sum_probs=106.5
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEe-CCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS-GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~-~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~ 192 (415)
..+.|+++|.+|+|||||+++|++.... ..+.-..|.++...... ..+..+.+.||-|+...-...+-..|.. +..-
T Consensus 177 s~pviavVGYTNaGKsTLikaLT~Aal~-p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFisdLP~~LvaAF~A-TLee 254 (410)
T KOG0410|consen 177 SSPVIAVVGYTNAGKSTLIKALTKAALY-PNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFISDLPIQLVAAFQA-TLEE 254 (410)
T ss_pred CCceEEEEeecCccHHHHHHHHHhhhcC-ccchhheeccchhhhccCCCCcEEEEeechhhhhhCcHHHHHHHHH-HHHH
Confidence 4568999999999999999999965543 23333344443332222 2455789999999977555555444433 3444
Q ss_pred hcccceEEEEecCCCCC-chHHHHHHHHhcccC-CCCC----EEEEEeCCCCCChhHHHHHHHHHhhcCCCccEEEcccC
Q 014942 193 GINADCIVVLVDACKAP-ERIDEILEEGVGDHK-DKLP----ILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAK 266 (415)
Q Consensus 193 ~~~aD~ii~VvD~~~~~-~~~~~~l~~~l~~~~-~~~p----iilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~ 266 (415)
...+|+++.|+|+++|. +.+...++..++... +..| ++=|-||+|......-. . . ...+++||+
T Consensus 255 VaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e~--------E-~-n~~v~isal 324 (410)
T KOG0410|consen 255 VAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVEE--------E-K-NLDVGISAL 324 (410)
T ss_pred HhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCcc--------c-c-CCccccccc
Confidence 67899999999999987 455556666666532 2233 45677888865432111 0 1 126899999
Q ss_pred CCCCHHHHHHHHHhhCCC
Q 014942 267 YGHGVEDIRDWILTKLPL 284 (415)
Q Consensus 267 ~g~gv~eL~~~L~~~l~~ 284 (415)
+|.|++++++.+-..+..
T Consensus 325 tgdgl~el~~a~~~kv~~ 342 (410)
T KOG0410|consen 325 TGDGLEELLKAEETKVAS 342 (410)
T ss_pred cCccHHHHHHHHHHHhhh
Confidence 999999999999876643
No 286
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.31 E-value=3.6e-12 Score=112.93 Aligned_cols=118 Identities=27% Similarity=0.388 Sum_probs=66.0
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeee-eCCCCceEEeEEEE-E-eCCCeeEEEEeCCCCchhhhhhHhHHHHHHHH
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIV-TNKPQTTRHRILGI-C-SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~-~~~~~tt~~~~~~~-~-~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~ 190 (415)
+.+.|+++|++|+|||+|+.+|.......+ +.. ...... + ...+..+.++|+||+ .+ ++..+....
T Consensus 2 k~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-----e~n~~~~~~~~~~~~~~lvD~PGH--~r---lr~~~~~~~- 70 (181)
T PF09439_consen 2 KRPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-----ENNIAYNVNNSKGKKLRLVDIPGH--PR---LRSKLLDEL- 70 (181)
T ss_dssp ---EEEEE-STTSSHHHHHHHHHHSS---B---S-----SEEEECCGSSTCGTCECEEEETT---HC---CCHHHHHHH-
T ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-----cCCceEEeecCCCCEEEEEECCCc--HH---HHHHHHHhh-
Confidence 445899999999999999999998754211 111 111111 1 224568999999995 33 222222221
Q ss_pred hhhcccceEEEEecCCCCC---chHHHHHHHHhcc---cCCCCCEEEEEeCCCCCChh
Q 014942 191 SAGINADCIVVLVDACKAP---ERIDEILEEGVGD---HKDKLPILLVLNKKDLIKPG 242 (415)
Q Consensus 191 ~~~~~aD~ii~VvD~~~~~---~~~~~~l~~~l~~---~~~~~piilV~NK~Dl~~~~ 242 (415)
.+...+.+||||+|++... ....+.+..++.. .....|++|++||.|+....
T Consensus 71 ~~~~~~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~ 128 (181)
T PF09439_consen 71 KYLSNAKGIIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAK 128 (181)
T ss_dssp HHHGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT--
T ss_pred hchhhCCEEEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccC
Confidence 1367899999999987422 2222333333322 23678999999999997643
No 287
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.31 E-value=3.3e-11 Score=106.95 Aligned_cols=156 Identities=24% Similarity=0.337 Sum_probs=96.3
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhcc
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (415)
..|.++|..++|||+|+-.|...... ...|...+..+.+..+.....++|.||+. + ++..+.+..... ..
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~----~TvtSiepn~a~~r~gs~~~~LVD~PGH~--r---lR~kl~e~~~~~-~~ 108 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSHR----GTVTSIEPNEATYRLGSENVTLVDLPGHS--R---LRRKLLEYLKHN-YS 108 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCcc----CeeeeeccceeeEeecCcceEEEeCCCcH--H---HHHHHHHHcccc-cc
Confidence 47999999999999999999876432 11122233344455555568999999952 2 222222222211 37
Q ss_pred cceEEEEecCCCCC---chHHHHHHHHhccc---CCCCCEEEEEeCCCCCChhH---H----HHHHHHHhh---------
Q 014942 196 ADCIVVLVDACKAP---ERIDEILEEGVGDH---KDKLPILLVLNKKDLIKPGE---I----AKKLEWYEK--------- 253 (415)
Q Consensus 196 aD~ii~VvD~~~~~---~~~~~~l~~~l~~~---~~~~piilV~NK~Dl~~~~~---~----~~~~~~~~~--------- 253 (415)
+-++|||+|+..-. ....+.+...+-.. ....|+++++||.|+..... + +..+..+..
T Consensus 109 akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~ 188 (238)
T KOG0090|consen 109 AKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSIS 188 (238)
T ss_pred ceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 88999999986543 33444454444332 36789999999999964221 1 111111110
Q ss_pred ---------------------cC-CCccEEEcccCCCCCHHHHHHHHHhhC
Q 014942 254 ---------------------FT-DVDEVIPVSAKYGHGVEDIRDWILTKL 282 (415)
Q Consensus 254 ---------------------~~-~~~~i~~vSA~~g~gv~eL~~~L~~~l 282 (415)
.. ....+.++|+++| +++++.+||.+.+
T Consensus 189 ~ed~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~l 238 (238)
T KOG0090|consen 189 DEDIAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREAL 238 (238)
T ss_pred cccccccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHhC
Confidence 00 1235788899988 8999999998753
No 288
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.30 E-value=9.4e-12 Score=114.45 Aligned_cols=167 Identities=15% Similarity=0.133 Sum_probs=97.9
Q ss_pred EEEEEecCCCCHHHHHHHHhCCceeeee-CCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhh--hhHhHHHHHHHHhhh
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQKLSIVT-NKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI--HMLDSMMMKNVRSAG 193 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~~~~~~~-~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~--~~l~~~~~~~~~~~~ 193 (415)
+|+++|.+|+||||++|.|+|....... .....|...........+..+.+|||||+.+... ..+...+.+.+....
T Consensus 2 ~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~ 81 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLCS 81 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhcc
Confidence 7999999999999999999998865433 2233444444445577888999999999965322 122222333333345
Q ss_pred cccceEEEEecCCCCCchHHHHHHHHhccc-C--CCCCEEEEEeCCCCCChhHHHHH---------HHHHhhcCCCccEE
Q 014942 194 INADCIVVLVDACKAPERIDEILEEGVGDH-K--DKLPILLVLNKKDLIKPGEIAKK---------LEWYEKFTDVDEVI 261 (415)
Q Consensus 194 ~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~-~--~~~piilV~NK~Dl~~~~~~~~~---------~~~~~~~~~~~~i~ 261 (415)
...+++|+|+... .+...+....+.+... . .-..++||+|..|......+.+. .+.+....+ .++
T Consensus 82 ~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~--R~~ 158 (212)
T PF04548_consen 82 PGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGG--RYH 158 (212)
T ss_dssp T-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTT--CEE
T ss_pred CCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCC--EEE
Confidence 6799999999987 5544444333333221 1 22468999999997765433222 222333333 344
Q ss_pred EcccC------CCCCHHHHHHHHHhhCCCCC
Q 014942 262 PVSAK------YGHGVEDIRDWILTKLPLGP 286 (415)
Q Consensus 262 ~vSA~------~g~gv~eL~~~L~~~l~~~~ 286 (415)
..+.+ ....+.+|++.+-+.+....
T Consensus 159 ~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~ 189 (212)
T PF04548_consen 159 VFNNKTKDKEKDESQVSELLEKIEEMVQENG 189 (212)
T ss_dssp ECCTTHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEeccccchhhhHHHHHHHHHHHHHHHHHcC
Confidence 44443 33568888888888776543
No 289
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.29 E-value=2.2e-11 Score=107.35 Aligned_cols=112 Identities=29% Similarity=0.317 Sum_probs=71.2
Q ss_pred EEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEE----------------------------------------
Q 014942 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI---------------------------------------- 157 (415)
Q Consensus 118 V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~---------------------------------------- 157 (415)
|+|+|..++|||||+|+|+|..+..++..+.|........
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPILPSGVGPCTAVPTEISYGDEPEIEHEEAIIEFKDGSEEFEELNELREQIDEEFDSIE 80 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS-SSSSSSSTTSSEEEEEEEESSSCCTSEEEECEEEETEEBCCHHHHHHHHHHHHHHHH
T ss_pred CEEEcCCCCCHHHHHHHHHhcccCcccccccccceeEEEecccCccccccccccccccccchhhHHHHHHhhhccccccc
Confidence 7899999999999999999987654333333221110000
Q ss_pred ---------------EeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhcccceEEEEecCCCCCch-HHHHHHHHhc
Q 014942 158 ---------------CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPER-IDEILEEGVG 221 (415)
Q Consensus 158 ---------------~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~-~~~~l~~~l~ 221 (415)
.......+.|+||||+.... .... ..+..++..+|++|||+++.+.... ....+.+...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~lvDtPG~~~~~--~~~~---~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~ 155 (168)
T PF00350_consen 81 GKLEQISSKVIVISISSPLLRNLTLVDTPGLNSTN--SEHT---EITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLD 155 (168)
T ss_dssp TSSS-S-SSEEEEEEEETTSCSEEEEEEEEBHSSH--TTTS---HHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHT
T ss_pred ccccccccceeEEeeccccccceEEEeCCccccch--hhhH---HHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhc
Confidence 01112368999999984311 1111 3356667999999999999887653 3445555555
Q ss_pred ccCCCCCEEEEEeCC
Q 014942 222 DHKDKLPILLVLNKK 236 (415)
Q Consensus 222 ~~~~~~piilV~NK~ 236 (415)
. ....+++|+||+
T Consensus 156 ~--~~~~~i~V~nk~ 168 (168)
T PF00350_consen 156 P--DKSRTIFVLNKA 168 (168)
T ss_dssp T--TCSSEEEEEE-G
T ss_pred C--CCCeEEEEEcCC
Confidence 5 455699999995
No 290
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.28 E-value=1.1e-11 Score=113.79 Aligned_cols=125 Identities=22% Similarity=0.259 Sum_probs=74.2
Q ss_pred eeEEEEeCCCCchhh-hhhHhHHHHHHHHhhhcccceEEEEecCCCCCch---HHHHHHHHhcccCCCCCEEEEEeCCCC
Q 014942 163 YQMILYDTPGIIEKK-IHMLDSMMMKNVRSAGINADCIVVLVDACKAPER---IDEILEEGVGDHKDKLPILLVLNKKDL 238 (415)
Q Consensus 163 ~~l~liDtpG~~~~~-~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~---~~~~l~~~l~~~~~~~piilV~NK~Dl 238 (415)
...+++||||.+.-- ...-...+.+... ....-+++||+|....... ....+...--.+..+.|+|+|.||+|+
T Consensus 116 ~~~~liDTPGQIE~FtWSAsGsIIte~la--ss~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyktklp~ivvfNK~Dv 193 (366)
T KOG1532|consen 116 FDYVLIDTPGQIEAFTWSASGSIITETLA--SSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYKTKLPFIVVFNKTDV 193 (366)
T ss_pred cCEEEEcCCCceEEEEecCCccchHhhHh--hcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHhccCCeEEEEecccc
Confidence 468999999965311 1111112222221 2345689999998654422 222222211112378999999999999
Q ss_pred CChhHHHHHHHH-------Hh-------------------hcCCCccEEEcccCCCCCHHHHHHHHHhhCCCCCCCC
Q 014942 239 IKPGEIAKKLEW-------YE-------------------KFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYY 289 (415)
Q Consensus 239 ~~~~~~~~~~~~-------~~-------------------~~~~~~~i~~vSA~~g~gv~eL~~~L~~~l~~~~~~~ 289 (415)
.+..-..++... +. ........+.+||.+|.|.++++..+.+.+.+....|
T Consensus 194 ~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdEy~~~y 270 (366)
T KOG1532|consen 194 SDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDEYEEEY 270 (366)
T ss_pred cccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHHHHHHh
Confidence 865432222211 11 1112346799999999999999999998887644444
No 291
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.27 E-value=1.2e-11 Score=105.15 Aligned_cols=155 Identities=23% Similarity=0.202 Sum_probs=103.8
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~ 193 (415)
|.++++++|-.|+|||||++.|-...... -..|.++....+...+..+..+|..|+.+ -.+.++.++
T Consensus 19 K~gKllFlGLDNAGKTTLLHMLKdDrl~q----hvPTlHPTSE~l~Ig~m~ftt~DLGGH~q---------Arr~wkdyf 85 (193)
T KOG0077|consen 19 KFGKLLFLGLDNAGKTTLLHMLKDDRLGQ----HVPTLHPTSEELSIGGMTFTTFDLGGHLQ---------ARRVWKDYF 85 (193)
T ss_pred cCceEEEEeecCCchhhHHHHHccccccc----cCCCcCCChHHheecCceEEEEccccHHH---------HHHHHHHHH
Confidence 66799999999999999999998877543 22344454556677888999999999533 234477788
Q ss_pred cccceEEEEecCCCCC--chHHHHHHHHhccc-CCCCCEEEEEeCCCCCChhH---HHHHHHHHhhc------------C
Q 014942 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGE---IAKKLEWYEKF------------T 255 (415)
Q Consensus 194 ~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~-~~~~piilV~NK~Dl~~~~~---~~~~~~~~~~~------------~ 255 (415)
..+|.+++++|+.+.. .+....+..++... -.+.|+++.+||+|.+.... +.......... .
T Consensus 86 ~~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se~~l~~~l~l~~~t~~~~~v~~~~~~~ 165 (193)
T KOG0077|consen 86 PQVDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRFHLGLSNFTTGKGKVNLTDSNV 165 (193)
T ss_pred hhhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccHHHHHHHHHHHHHhcccccccccCCCC
Confidence 9999999999997643 22222222222111 16799999999999986432 22111111110 1
Q ss_pred CCccEEEcccCCCCCHHHHHHHHHhh
Q 014942 256 DVDEVIPVSAKYGHGVEDIRDWILTK 281 (415)
Q Consensus 256 ~~~~i~~vSA~~g~gv~eL~~~L~~~ 281 (415)
....+|.||...+.|..+-+.|+...
T Consensus 166 rp~evfmcsi~~~~gy~e~fkwl~qy 191 (193)
T KOG0077|consen 166 RPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
T ss_pred CeEEEEEEEEEccCccceeeeehhhh
Confidence 12356889999888877777776544
No 292
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=1e-10 Score=108.36 Aligned_cols=158 Identities=20% Similarity=0.211 Sum_probs=108.0
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCc----------eee-----eeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhh
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQK----------LSI-----VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHM 180 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~----------~~~-----~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~ 180 (415)
.+|+.+|+.+.|||||..+|...- +.. -....+.|.+.....+...+..+-.+|+||+.+
T Consensus 13 VNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaD----- 87 (394)
T COG0050 13 VNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHAD----- 87 (394)
T ss_pred eEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHH-----
Confidence 489999999999999999986321 100 112235566666666777888999999999532
Q ss_pred HhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCC-EEEEEeCCCCCChhHHHHH-----HHHHhhc
Q 014942 181 LDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKDLIKPGEIAKK-----LEWYEKF 254 (415)
Q Consensus 181 l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~p-iilV~NK~Dl~~~~~~~~~-----~~~~~~~ 254 (415)
+.++......+.|..|+|+.+.++..++.....-+.++ .+.| +++++||+|+.+..++.+. .+.+..+
T Consensus 88 ----YvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarq--vGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y 161 (394)
T COG0050 88 ----YVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQ--VGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEY 161 (394)
T ss_pred ----HHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhh--cCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHc
Confidence 44555555678999999999999987666555444455 6676 6778999999985544322 2222222
Q ss_pred ---CCCccEEEcccCCCC--------CHHHHHHHHHhhCCC
Q 014942 255 ---TDVDEVIPVSAKYGH--------GVEDIRDWILTKLPL 284 (415)
Q Consensus 255 ---~~~~~i~~vSA~~g~--------gv~eL~~~L~~~l~~ 284 (415)
....|++.-||..-- .|.+|++.+-+++|.
T Consensus 162 ~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~ 202 (394)
T COG0050 162 GFPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPT 202 (394)
T ss_pred CCCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCC
Confidence 234577777876422 367888888888875
No 293
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=1.2e-11 Score=124.16 Aligned_cols=222 Identities=18% Similarity=0.133 Sum_probs=146.7
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceee-----e------------eCCCCceEEeEEEEEeCCCeeEEEEeCCCCchh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI-----V------------TNKPQTTRHRILGICSGPEYQMILYDTPGIIEK 176 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~-----~------------~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~ 176 (415)
+-..|.++-+-.+||||+.++++.....+ + ....+.|.......+.+.++.+++|||||+.+.
T Consensus 38 k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDF 117 (721)
T KOG0465|consen 38 KIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDF 117 (721)
T ss_pred hhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeE
Confidence 44579999999999999999987432111 1 112233444444456778899999999997654
Q ss_pred hhhhHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHH---HHHHHHHh-
Q 014942 177 KIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI---AKKLEWYE- 252 (415)
Q Consensus 177 ~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~---~~~~~~~~- 252 (415)
.+. +..+++--|.+|+|+|+..+.+.+...+++..+. .+.|.|..+||+|....... ..+...+.
T Consensus 118 T~E---------VeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~r--y~vP~i~FiNKmDRmGa~~~~~l~~i~~kl~~ 186 (721)
T KOG0465|consen 118 TFE---------VERALRVLDGAVLVLDAVAGVESQTETVWRQMKR--YNVPRICFINKMDRMGASPFRTLNQIRTKLNH 186 (721)
T ss_pred EEE---------ehhhhhhccCeEEEEEcccceehhhHHHHHHHHh--cCCCeEEEEehhhhcCCChHHHHHHHHhhcCC
Confidence 332 4455788899999999999999999888888887 89999999999998643211 11000000
Q ss_pred --------------------------------------------------------------------------------
Q 014942 253 -------------------------------------------------------------------------------- 252 (415)
Q Consensus 253 -------------------------------------------------------------------------------- 252 (415)
T Consensus 187 ~~a~vqiPig~e~~f~GvvDlv~~kai~~~g~~g~~i~~~eIP~~l~~~~~e~R~~LIE~lad~DE~l~e~fLee~~ps~ 266 (721)
T KOG0465|consen 187 KPAVVQIPIGSESNFKGVVDLVNGKAIYWDGENGEIVRKDEIPEDLEELAEEKRQALIETLADVDETLAEMFLEEEEPSA 266 (721)
T ss_pred chheeEccccccccchhHHhhhhceEEEEcCCCCceeEeccCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhccCCCCH
Confidence
Q ss_pred -----------hcCCCccEEEcccCCCCCHHHHHHHHHhhCCCCCCCCCCCCcc-ccCC---------chh-HHHHHHHH
Q 014942 253 -----------KFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKFQDI-VSEH---------PER-FFVGEIIR 310 (415)
Q Consensus 253 -----------~~~~~~~i~~vSA~~g~gv~eL~~~L~~~l~~~~~~~~~~~~~-~t~~---------~~~-~~i~eiir 310 (415)
-...+.|+++-||..+.||+-|++++++++|.. .......-. .++. ++. ++++-
T Consensus 267 ~~l~~aIRr~Ti~r~fvPVl~GSAlKNkGVQPlLDAVvdYLPsP-~Ev~n~a~~ke~~~~ekv~l~~~~d~~Pfv~L--- 342 (721)
T KOG0465|consen 267 QQLKAAIRRATIKRSFVPVLCGSALKNKGVQPLLDAVVDYLPSP-SEVENYALNKETNSKEKVTLSPSRDKDPFVAL--- 342 (721)
T ss_pred HHHHHHHHHHHhhcceeeEEechhhcccCcchHHHHHHHhCCCh-hhhcccccccCCCCccceEeccCCCCCceeee---
Confidence 022467999999999999999999999999863 222210000 0111 111 23321
Q ss_pred HHHHhhcCCCCCceEEEEEEEEEecCCCeeEEEEEEEEeeCC
Q 014942 311 EKIFMQYRNEVPYACQVNVVSYKTRPTAKDFIQVEIVVEKNS 352 (415)
Q Consensus 311 eki~~~~~~eipys~~v~i~~~~~~~~~~~~i~~~~~~~r~~ 352 (415)
.|..-....|..+.+++..++.+.+..+++..+....|.+
T Consensus 343 --AFKle~g~fGqLTyvRvYqG~L~kG~~iyN~rtgKKvrv~ 382 (721)
T KOG0465|consen 343 --AFKLEEGRFGQLTYVRVYQGTLSKGDTIYNVRTGKKVRVG 382 (721)
T ss_pred --EEEeeecCccceEEEEEeeeeecCCcEEEecCCCceeEhH
Confidence 2222234458899999999999877666665444443433
No 294
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=7.5e-11 Score=111.33 Aligned_cols=158 Identities=18% Similarity=0.215 Sum_probs=101.9
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCc--ee----eeeCCCCceEEeEEEEE---------eCCCeeEEEEeCCCCchhhhhh
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQK--LS----IVTNKPQTTRHRILGIC---------SGPEYQMILYDTPGIIEKKIHM 180 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~--~~----~~~~~~~tt~~~~~~~~---------~~~~~~l~liDtpG~~~~~~~~ 180 (415)
.+++++|+..+|||||..+|..-. .+ ..+...+.|.+.-...+ ..+..++.++|+||+.
T Consensus 8 ~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHa------ 81 (522)
T KOG0461|consen 8 LNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHA------ 81 (522)
T ss_pred eeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcH------
Confidence 589999999999999999996422 11 11222233332211111 2234578999999952
Q ss_pred HhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHH----HHHHHHHhh---
Q 014942 181 LDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI----AKKLEWYEK--- 253 (415)
Q Consensus 181 l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~----~~~~~~~~~--- 253 (415)
.+.+.+.....-.|+.++|+|+..+.+.+....+-+-.. .....++|+||+|....... ++....+.+
T Consensus 82 ---sLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~--~c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe 156 (522)
T KOG0461|consen 82 ---SLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGEL--LCKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLE 156 (522)
T ss_pred ---HHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhh--hccceEEEEeccccccchhhhhHHHHHHHHHHHHHH
Confidence 144555555677899999999998875554433222222 33567899999998765332 222222221
Q ss_pred ---cCCCccEEEcccCCC----CCHHHHHHHHHhhCCC
Q 014942 254 ---FTDVDEVIPVSAKYG----HGVEDIRDWILTKLPL 284 (415)
Q Consensus 254 ---~~~~~~i~~vSA~~g----~gv~eL~~~L~~~l~~ 284 (415)
..+..|++++||+.| +++.+|.+.|.+.+..
T Consensus 157 ~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~ 194 (522)
T KOG0461|consen 157 STGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFE 194 (522)
T ss_pred hcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcC
Confidence 235579999999999 8999999999988754
No 295
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=7.8e-11 Score=118.38 Aligned_cols=212 Identities=18% Similarity=0.220 Sum_probs=129.1
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCc------------------------eeee------eCCCCceEEeEEEEEeCCCe
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQK------------------------LSIV------TNKPQTTRHRILGICSGPEY 163 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~------------------------~~~~------~~~~~tt~~~~~~~~~~~~~ 163 (415)
....++++|+.++|||||+-+|+..- ++-+ ....|.|.+.....+.....
T Consensus 176 ~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~~ 255 (603)
T KOG0458|consen 176 DHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKSK 255 (603)
T ss_pred cceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCce
Confidence 34489999999999999999885210 0001 12234555655666777778
Q ss_pred eEEEEeCCCCchhhhhhHhHHHHHHHHhhhcccceEEEEecCCCCC-------chHHHHHHHHhcccCCCCCEEEEEeCC
Q 014942 164 QMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP-------ERIDEILEEGVGDHKDKLPILLVLNKK 236 (415)
Q Consensus 164 ~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~-------~~~~~~l~~~l~~~~~~~piilV~NK~ 236 (415)
.++++|+||+.+ |...+......||++++|+|++.+. ..+......+++.+ .-..+|+++||+
T Consensus 256 ~~tliDaPGhkd---------Fi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~L-gi~qlivaiNKm 325 (603)
T KOG0458|consen 256 IVTLIDAPGHKD---------FIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSL-GISQLIVAINKM 325 (603)
T ss_pred eEEEecCCCccc---------cchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHc-CcceEEEEeecc
Confidence 999999999532 3344555578899999999998543 23344555555553 235689999999
Q ss_pred CCCCh--hHHHHHHH----HHhhcCCC----ccEEEcccCCCCCHHHHH-H-HHHhhCCCCCCCCCCCC-----ccccCC
Q 014942 237 DLIKP--GEIAKKLE----WYEKFTDV----DEVIPVSAKYGHGVEDIR-D-WILTKLPLGPAYYPKFQ-----DIVSEH 299 (415)
Q Consensus 237 Dl~~~--~~~~~~~~----~~~~~~~~----~~i~~vSA~~g~gv~eL~-~-~L~~~l~~~~~~~~~~~-----~~~t~~ 299 (415)
|++.- +...++.. .+.+..+| ..++|||+.+|+|+...- + .+. ....||.+...+. ..-.+.
T Consensus 326 D~V~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~~~~~~l~-~WY~Gp~LL~~id~~~~p~~~~~k 404 (603)
T KOG0458|consen 326 DLVSWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKIEQENELS-QWYKGPTLLSQIDSFKIPERPIDK 404 (603)
T ss_pred cccCccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCcccccccchhhh-hhhcCChHHHHHhhccCCCCcccC
Confidence 99853 22333322 22132232 378999999999986531 1 111 1111111110000 111345
Q ss_pred chhHHHHHHHHHHHHhhcCCCCCceEEEEEEEEEecCCCeeEEE
Q 014942 300 PERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTRPTAKDFIQ 343 (415)
Q Consensus 300 ~~~~~i~eiireki~~~~~~eipys~~v~i~~~~~~~~~~~~i~ 343 (415)
|.++-|.++.+ -+..+.++...+++|..+++..++|.
T Consensus 405 Pl~ltIsdi~~-------~~~~~~~i~gkiesG~iq~gqkl~i~ 441 (603)
T KOG0458|consen 405 PLRLTISDIYP-------LPSSGVSISGKIESGYIQPGQKLYIM 441 (603)
T ss_pred CeEEEhhheee-------cCCCeeEEEEEEeccccccCCEEEEe
Confidence 76666776653 45566788888999888877666654
No 296
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.27 E-value=5.8e-11 Score=110.46 Aligned_cols=125 Identities=19% Similarity=0.215 Sum_probs=82.5
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEE--------------------------------------
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRIL-------------------------------------- 155 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~-------------------------------------- 155 (415)
..|.++++|+.|+||||++++|.|..+....... .|+.++.
T Consensus 25 ~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~-~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 103 (240)
T smart00053 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGI-VTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRV 103 (240)
T ss_pred CCCeEEEEcCCCccHHHHHHHHhCCCccccCCCc-ccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHh
Confidence 4568999999999999999999987532111000 0100000
Q ss_pred -------------E-EEeCCCeeEEEEeCCCCchhh----hhhHhHHHHHHHHhhhc-ccceEEEEecCCCCCchHH-HH
Q 014942 156 -------------G-ICSGPEYQMILYDTPGIIEKK----IHMLDSMMMKNVRSAGI-NADCIVVLVDACKAPERID-EI 215 (415)
Q Consensus 156 -------------~-~~~~~~~~l~liDtpG~~~~~----~~~l~~~~~~~~~~~~~-~aD~ii~VvD~~~~~~~~~-~~ 215 (415)
. +.......+.++||||+.... ...+...+.+.+..|++ ..+++++|+|++......+ ..
T Consensus 104 ~~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ 183 (240)
T smart00053 104 TGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALK 183 (240)
T ss_pred cCCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHH
Confidence 0 001112478999999996321 13344556666778888 4569999999987765544 35
Q ss_pred HHHHhcccCCCCCEEEEEeCCCCCCh
Q 014942 216 LEEGVGDHKDKLPILLVLNKKDLIKP 241 (415)
Q Consensus 216 l~~~l~~~~~~~piilV~NK~Dl~~~ 241 (415)
+.+.++. .+.|+++|+||+|...+
T Consensus 184 ia~~ld~--~~~rti~ViTK~D~~~~ 207 (240)
T smart00053 184 LAKEVDP--QGERTIGVITKLDLMDE 207 (240)
T ss_pred HHHHHHH--cCCcEEEEEECCCCCCc
Confidence 6666655 67899999999999864
No 297
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.25 E-value=3.7e-11 Score=112.11 Aligned_cols=115 Identities=25% Similarity=0.251 Sum_probs=57.6
Q ss_pred eEEEEeCCCCchhhhhhHhHHHHHHHHhhh-cccceEEEEecCCCCCch---HHHHHHHHhcccCCCCCEEEEEeCCCCC
Q 014942 164 QMILYDTPGIIEKKIHMLDSMMMKNVRSAG-INADCIVVLVDACKAPER---IDEILEEGVGDHKDKLPILLVLNKKDLI 239 (415)
Q Consensus 164 ~l~liDtpG~~~~~~~~l~~~~~~~~~~~~-~~aD~ii~VvD~~~~~~~---~~~~l~~~l~~~~~~~piilV~NK~Dl~ 239 (415)
.+.++||||. -........+..-+.... ...-++++++|+...... ....+....-....+.|.|.|+||+|+.
T Consensus 92 ~y~l~DtPGQ--iElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~ 169 (238)
T PF03029_consen 92 DYLLFDTPGQ--IELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLL 169 (238)
T ss_dssp SEEEEE--SS--HHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS
T ss_pred cEEEEeCCCC--EEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcc
Confidence 7899999995 344333333322222222 235578999998643322 1122222222222579999999999998
Q ss_pred ChhHHHHHHH---------------------HHh---hcCCCc-cEEEcccCCCCCHHHHHHHHHhh
Q 014942 240 KPGEIAKKLE---------------------WYE---KFTDVD-EVIPVSAKYGHGVEDIRDWILTK 281 (415)
Q Consensus 240 ~~~~~~~~~~---------------------~~~---~~~~~~-~i~~vSA~~g~gv~eL~~~L~~~ 281 (415)
+.. .....+ .+. ...... +++++|+.+++|+.+|+..+-+.
T Consensus 170 ~~~-~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a 235 (238)
T PF03029_consen 170 SKY-LEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKA 235 (238)
T ss_dssp -HH-HHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHH
T ss_pred cch-hHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHH
Confidence 732 111111 111 112333 78999999999999999988654
No 298
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.25 E-value=4.5e-11 Score=116.78 Aligned_cols=221 Identities=17% Similarity=0.216 Sum_probs=126.3
Q ss_pred cEEEEEecCCCCHHHHHHHHhCC----cee-----------eeeCCCC---ceEEeEE---E---E--EeCCCeeEEEEe
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQ----KLS-----------IVTNKPQ---TTRHRIL---G---I--CSGPEYQMILYD 169 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~----~~~-----------~~~~~~~---tt~~~~~---~---~--~~~~~~~l~liD 169 (415)
..|+++|+.++|||||+|+|.+. +.. .+++.+| +|.++.. . + ...-..++.++|
T Consensus 18 IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~VrlID 97 (492)
T TIGR02836 18 IYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRLVD 97 (492)
T ss_pred EEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEEEE
Confidence 48999999999999999999998 666 6778888 6665544 1 1 122235899999
Q ss_pred CCCCchhhhhhHhHHHHHH----------------------HHhhhc-ccceEEEEe-cCC------CCCchHHHHHHHH
Q 014942 170 TPGIIEKKIHMLDSMMMKN----------------------VRSAGI-NADCIVVLV-DAC------KAPERIDEILEEG 219 (415)
Q Consensus 170 tpG~~~~~~~~l~~~~~~~----------------------~~~~~~-~aD~ii~Vv-D~~------~~~~~~~~~l~~~ 219 (415)
|+|+.... .+...-... ++..+. .+|+.|+|. |.+ .........+.+.
T Consensus 98 cvG~~v~G--alG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~e 175 (492)
T TIGR02836 98 CVGYTVKG--ALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEE 175 (492)
T ss_pred CCCcccCC--CccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHH
Confidence 99985421 111100011 445566 899999998 875 3344555566666
Q ss_pred hcccCCCCCEEEEEeCCCCCChhHHHHHHHHHhhcCCCccEEEcccCC--CCCHHHHHHHHHhhCCCCC--CCCCCCCcc
Q 014942 220 VGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKY--GHGVEDIRDWILTKLPLGP--AYYPKFQDI 295 (415)
Q Consensus 220 l~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~--g~gv~eL~~~L~~~l~~~~--~~~~~~~~~ 295 (415)
++. .++|+++|+||+|-..+. .......+....+ .+++++|+.. ...|..+++.++-..|-.. -..|.+-+.
T Consensus 176 Lk~--~~kPfiivlN~~dp~~~e-t~~l~~~l~eky~-vpvl~v~c~~l~~~DI~~il~~vL~EFPv~Ei~~~~P~Wve~ 251 (492)
T TIGR02836 176 LKE--LNKPFIILLNSTHPYHPE-TEALRQELEEKYD-VPVLAMDVESMRESDILSVLEEVLYEFPILEINIDLPSWVEV 251 (492)
T ss_pred HHh--cCCCEEEEEECcCCCCch-hHHHHHHHHHHhC-CceEEEEHHHcCHHHHHHHHHHHHhcCCceEEEeeCchHHHh
Confidence 666 799999999999943322 2222233333333 4778887753 3344445544444333221 112222222
Q ss_pred c-cCCchhHHHHHHHHHHHHh--h---------cCCCCCceEEEEEEEEEecCCCeeEEE
Q 014942 296 V-SEHPERFFVGEIIREKIFM--Q---------YRNEVPYACQVNVVSYKTRPTAKDFIQ 343 (415)
Q Consensus 296 ~-t~~~~~~~i~eiireki~~--~---------~~~eipys~~v~i~~~~~~~~~~~~i~ 343 (415)
+ .++..+.-+.+.+|+.+-. + ...+.+|...+.+.....- +|...|.
T Consensus 252 L~~~Hwlk~~~~~~i~~~~~~i~~irDv~~~~~~~~~~e~i~~~~l~~i~lg-~G~~~i~ 310 (492)
T TIGR02836 252 LDENHWLKENFQSSVKETVKDVYRLRDVDNVVGQLKENEFIESVGLAGIEMG-EGVAEID 310 (492)
T ss_pred cCCCchHHHHHHHHHHHHHHhhhHHhhHHhhhccccccchhhhheeeeEecC-CcEEEEE
Confidence 2 3345544444455543211 1 1245566665655555432 3445454
No 299
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.23 E-value=1.9e-11 Score=106.24 Aligned_cols=159 Identities=21% Similarity=0.271 Sum_probs=107.7
Q ss_pred ccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceE---EeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHh
Q 014942 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTR---HRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~---~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~ 191 (415)
..+++++|..|.||||++++.+...+. ..++.|+. +.....-..+..++..|||.| ++.+..++..
T Consensus 10 ~fklvlvGdgg~gKtt~vkr~ltgeFe--~~y~at~Gv~~~pl~f~tn~g~irf~~wdtag--qEk~gglrdg------- 78 (216)
T KOG0096|consen 10 TFKLVLVGDGGTGKTTFVKRHLTGEFE--KTYPATLGVEVHPLLFDTNRGQIRFNVWDTAG--QEKKGGLRDG------- 78 (216)
T ss_pred eEEEEEecCCcccccchhhhhhcccce--ecccCcceeEEeeeeeecccCcEEEEeeeccc--ceeecccccc-------
Confidence 348999999999999999999988775 23333333 222222222347899999999 4444433322
Q ss_pred hhcccceEEEEecCCCCC--chHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHHHHHHHhhcCCCccEEEcccCCCC
Q 014942 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGH 269 (415)
Q Consensus 192 ~~~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~ 269 (415)
++-.+.++++++|.+... .....|...+.+.. .++|+++++||.|...+..-..-..... .....++++||+++.
T Consensus 79 yyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~-~NiPiv~cGNKvDi~~r~~k~k~v~~~r--kknl~y~~iSaksn~ 155 (216)
T KOG0096|consen 79 YYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVR-ENIPIVLCGNKVDIKARKVKAKPVSFHR--KKNLQYYEISAKSNY 155 (216)
T ss_pred cEEecceeEEEeeeeehhhhhcchHHHHHHHHHh-cCCCeeeeccceeccccccccccceeee--cccceeEEeeccccc
Confidence 245677888899987655 44555555555443 5699999999999865441111111111 134578999999999
Q ss_pred CHHHHHHHHHhhCCCCCC
Q 014942 270 GVEDIRDWILTKLPLGPA 287 (415)
Q Consensus 270 gv~eL~~~L~~~l~~~~~ 287 (415)
|.+.-|-||.+.+..+|.
T Consensus 156 NfekPFl~LarKl~G~p~ 173 (216)
T KOG0096|consen 156 NFERPFLWLARKLTGDPS 173 (216)
T ss_pred ccccchHHHhhhhcCCCC
Confidence 999999999998876654
No 300
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.23 E-value=2.4e-11 Score=115.24 Aligned_cols=86 Identities=26% Similarity=0.325 Sum_probs=67.6
Q ss_pred EEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCe-----------------eEEEEeCCCCchhhhhh
Q 014942 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEY-----------------QMILYDTPGIIEKKIHM 180 (415)
Q Consensus 118 V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~-----------------~l~liDtpG~~~~~~~~ 180 (415)
|+|+|.||||||||+|+|++.+. .++++|++|.++..+.+...+. ++.++||||+......
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~-~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~- 78 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGA-EAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK- 78 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCC-ccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCch-
Confidence 58999999999999999999987 5789999999888877665443 5999999998643211
Q ss_pred HhHHHHHHHHhhhcccceEEEEecCC
Q 014942 181 LDSMMMKNVRSAGINADCIVVLVDAC 206 (415)
Q Consensus 181 l~~~~~~~~~~~~~~aD~ii~VvD~~ 206 (415)
...+.......++.||++++|+|+.
T Consensus 79 -~~glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 79 -GEGLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred -hhHHHHHHHHHHHhCCEEEEEEeCc
Confidence 2223344566688999999999975
No 301
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.22 E-value=1.6e-10 Score=106.83 Aligned_cols=163 Identities=13% Similarity=0.109 Sum_probs=94.1
Q ss_pred EEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEE-eCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhcc
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC-SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~-~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (415)
||+++|+.++||||+.+.+.++..+.-+..-+.|.+.....+ ..+...+.+||+||... .... .+.......+++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~-~~~~---~~~~~~~~if~~ 76 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDD-FMEN---YFNSQREEIFSN 76 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCS-TTHT---THTCCHHHHHCT
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccc-cccc---cccccHHHHHhc
Confidence 689999999999999999998754433344444544444444 35677999999999632 1111 111223334789
Q ss_pred cceEEEEecCC-CCCchHHHHHHH---HhcccCCCCCEEEEEeCCCCCChhHHHHHH--------HHHhhcC-CCccEEE
Q 014942 196 ADCIVVLVDAC-KAPERIDEILEE---GVGDHKDKLPILLVLNKKDLIKPGEIAKKL--------EWYEKFT-DVDEVIP 262 (415)
Q Consensus 196 aD~ii~VvD~~-~~~~~~~~~l~~---~l~~~~~~~piilV~NK~Dl~~~~~~~~~~--------~~~~~~~-~~~~i~~ 262 (415)
+.++|||+|+. .........+.. .+....++..+.+++.|+|+.......... +...... ....++.
T Consensus 77 v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~ 156 (232)
T PF04670_consen 77 VGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFL 156 (232)
T ss_dssp ESEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEE
T ss_pred cCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEe
Confidence 99999999998 333322222222 223334788999999999998654332222 1122211 1246788
Q ss_pred cccCCCCCHHHHHHHHHhhCCC
Q 014942 263 VSAKYGHGVEDIRDWILTKLPL 284 (415)
Q Consensus 263 vSA~~g~gv~eL~~~L~~~l~~ 284 (415)
||-.. ..+-+.+..++..+-+
T Consensus 157 TSI~D-~Sly~A~S~Ivq~LiP 177 (232)
T PF04670_consen 157 TSIWD-ESLYEAWSKIVQKLIP 177 (232)
T ss_dssp E-TTS-THHHHHHHHHHHTTST
T ss_pred ccCcC-cHHHHHHHHHHHHHcc
Confidence 88776 5788888777776654
No 302
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.22 E-value=6.4e-11 Score=108.50 Aligned_cols=151 Identities=19% Similarity=0.259 Sum_probs=85.7
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCC-----ceeeeeCCCCceEEe---------EEEE-------------------EeC
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQ-----KLSIVTNKPQTTRHR---------ILGI-------------------CSG 160 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~-----~~~~~~~~~~tt~~~---------~~~~-------------------~~~ 160 (415)
..+.|+++|++|+|||||+++++.. ........++...+. +... ...
T Consensus 21 ~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~~~ 100 (207)
T TIGR00073 21 GLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDLPL 100 (207)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHhcc
Confidence 4568999999999999999999743 122222222111110 0000 000
Q ss_pred CCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCC
Q 014942 161 PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (415)
Q Consensus 161 ~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~ 240 (415)
.+..+++++|.|....+. .+....+..+.|+|+.+....... .... ...|.++++||+|+..
T Consensus 101 ~~~d~IiIEt~G~l~~~~------------~~~~~~~~~i~Vvd~~~~d~~~~~----~~~~--~~~a~iiv~NK~Dl~~ 162 (207)
T TIGR00073 101 DDIDLLFIENVGNLVCPA------------DFDLGEHMRVVLLSVTEGDDKPLK----YPGM--FKEADLIVINKADLAE 162 (207)
T ss_pred CCCCEEEEecCCCcCCCc------------ccccccCeEEEEEecCcccchhhh----hHhH--HhhCCEEEEEHHHccc
Confidence 123566666666211110 001123444556666544322111 1111 3467899999999975
Q ss_pred h--hHHHHHHHHHhhcCCCccEEEcccCCCCCHHHHHHHHHhhC
Q 014942 241 P--GEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKL 282 (415)
Q Consensus 241 ~--~~~~~~~~~~~~~~~~~~i~~vSA~~g~gv~eL~~~L~~~l 282 (415)
. .......+.+....+..+++++||++|.|++++++++.+..
T Consensus 163 ~~~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~~ 206 (207)
T TIGR00073 163 AVGFDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQV 206 (207)
T ss_pred cchhhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3 22344444555545567899999999999999999998753
No 303
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.21 E-value=3.4e-10 Score=109.60 Aligned_cols=153 Identities=21% Similarity=0.289 Sum_probs=90.7
Q ss_pred CCccEEEEEecCCCCHHHHHHHHhC------CceeeeeCCCCceE-------E-------------eEEEE---------
Q 014942 113 HKSGYVAVLGKPNVGKSTLANQMIG------QKLSIVTNKPQTTR-------H-------------RILGI--------- 157 (415)
Q Consensus 113 ~~~~~V~ivG~~~vGKSSLln~l~~------~~~~~~~~~~~tt~-------~-------------~~~~~--------- 157 (415)
.+...|+|+|++|+|||||++.|.. .++..+...+..+. + .+...
T Consensus 32 ~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (300)
T TIGR00750 32 GNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSSPFTGGSILGDRTRMQRLATDPGAFIRSMPTRGHLGGL 111 (300)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCcchhhhcccchhhhhcccCCCceeeecCccccccch
Confidence 3556899999999999999999763 23332222211110 0 00000
Q ss_pred ----------EeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCC
Q 014942 158 ----------CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKL 227 (415)
Q Consensus 158 ----------~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~ 227 (415)
+...++.++|+||||..+... ..+..+|.++++.+...+ .... .+...+ .++
T Consensus 112 ~~~~~~~~~~l~~~g~D~viidT~G~~~~e~------------~i~~~aD~i~vv~~~~~~-~el~-~~~~~l----~~~ 173 (300)
T TIGR00750 112 SQATRELILLLDAAGYDVIIVETVGVGQSEV------------DIANMADTFVVVTIPGTG-DDLQ-GIKAGL----MEI 173 (300)
T ss_pred hHHHHHHHHHHHhCCCCEEEEeCCCCchhhh------------HHHHhhceEEEEecCCcc-HHHH-HHHHHH----hhh
Confidence 112356899999999753221 125678888888654322 1211 112211 357
Q ss_pred CEEEEEeCCCCCChhHHHHHH-------HHHhhc-CCC-ccEEEcccCCCCCHHHHHHHHHhhCC
Q 014942 228 PILLVLNKKDLIKPGEIAKKL-------EWYEKF-TDV-DEVIPVSAKYGHGVEDIRDWILTKLP 283 (415)
Q Consensus 228 piilV~NK~Dl~~~~~~~~~~-------~~~~~~-~~~-~~i~~vSA~~g~gv~eL~~~L~~~l~ 283 (415)
|.++|+||+|+.......... ..+... ..+ .+++++||++|.|+++|+++|.+...
T Consensus 174 ~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 174 ADIYVVNKADGEGATNVTIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred ccEEEEEcccccchhHHHHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 889999999998654321111 111111 111 36899999999999999999988643
No 304
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.21 E-value=1.9e-11 Score=106.93 Aligned_cols=148 Identities=18% Similarity=0.104 Sum_probs=95.5
Q ss_pred HhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHHHHHHHhhcCCCccEEEcccCCCC
Q 014942 190 RSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGH 269 (415)
Q Consensus 190 ~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~ 269 (415)
+.++.++|++++|+|++.+.......+.+.+.....++|+++|+||+|+.++..+......+.....+ .++++||+++.
T Consensus 3 ~~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~~~~~-~~~~iSa~~~~ 81 (157)
T cd01858 3 YKVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLVPTWVTARWVKILSKEYPT-IAFHASINNPF 81 (157)
T ss_pred hHhhhhCCEEEEEEECCCCccccCHHHHHHHHhccCCCCEEEEEEchhcCCHHHHHHHHHHHhcCCcE-EEEEeeccccc
Confidence 45688999999999999876544555555554432458999999999998766655556666554433 26889999999
Q ss_pred CHHHHHHHHHhhCCCCCCCCCCCCccccCCchhHHHHHHHHHHHHhhcCCCCCceEEEEEEEEEec------CCCeeEEE
Q 014942 270 GVEDIRDWILTKLPLGPAYYPKFQDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTR------PTAKDFIQ 343 (415)
Q Consensus 270 gv~eL~~~L~~~l~~~~~~~~~~~~~~t~~~~~~~i~eiireki~~~~~~eipys~~v~i~~~~~~------~~~~~~i~ 343 (415)
|+++|++.|.+.+..... +. .. .++....+++|+||.+|.+.+... +++ ....
T Consensus 82 ~~~~L~~~l~~~~~~~~~--~~--------~~----------~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~-T~~~ 140 (157)
T cd01858 82 GKGSLIQLLRQFSKLHSD--KK--------QI----------SVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGE-TKVW 140 (157)
T ss_pred cHHHHHHHHHHHHhhhcc--cc--------ce----------EEEEEeCCCCChHHHHHHHhcCCceeeCCCCCe-eEeE
Confidence 999999999876431000 00 00 112345788888888776654322 232 2222
Q ss_pred EEEEEeeCCceeEEeecCC
Q 014942 344 VEIVVEKNSQKIILIGKGG 362 (415)
Q Consensus 344 ~~~~~~r~~q~~iiiG~~g 362 (415)
..+ ..++...+++++|
T Consensus 141 ~~~---~~~~~~~liDtPG 156 (157)
T cd01858 141 QYI---TLMKRIYLIDCPG 156 (157)
T ss_pred EEE---EcCCCEEEEECcC
Confidence 122 1345578888887
No 305
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.19 E-value=1e-10 Score=98.42 Aligned_cols=169 Identities=22% Similarity=0.280 Sum_probs=112.5
Q ss_pred CCCccEEEEEecCCCCHHHHHHHHhCCceee-eeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHH
Q 014942 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKLSI-VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (415)
Q Consensus 112 ~~~~~~V~ivG~~~vGKSSLln~l~~~~~~~-~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~ 190 (415)
+.-+.+|.++|.+.+|||||+-.+++..... .....|.........+...+..+.+||..| ++.+. ....
T Consensus 17 n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG--~~~~~-------n~lP 87 (205)
T KOG1673|consen 17 NLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGG--QREFI-------NMLP 87 (205)
T ss_pred cceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCC--cHhhh-------ccCc
Confidence 3456799999999999999999999877631 111222211111223445566889999999 43332 2344
Q ss_pred hhhcccceEEEEecCCCCC--chHHHHHHHHhcccCCCCCEEEEEeCCCCC---Chh---HHHHHHHHHhhcCCCccEEE
Q 014942 191 SAGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLI---KPG---EIAKKLEWYEKFTDVDEVIP 262 (415)
Q Consensus 191 ~~~~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~~~~piilV~NK~Dl~---~~~---~~~~~~~~~~~~~~~~~i~~ 262 (415)
-+..++-+++|++|.+.+. ....+|..+........+| |+|++|-|+. +++ .+......+.+..+ .+.|.
T Consensus 88 iac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~NktAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mn-AsL~F 165 (205)
T KOG1673|consen 88 IACKDSVAILFMFDLTRRSTLNSIKEWYRQARGLNKTAIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMN-ASLFF 165 (205)
T ss_pred eeecCcEEEEEEEecCchHHHHHHHHHHHHHhccCCccce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhC-CcEEE
Confidence 4577899999999998765 4455555554433334455 6789999974 221 22222333433333 58899
Q ss_pred cccCCCCCHHHHHHHHHhhCCCCCCCCCC
Q 014942 263 VSAKYGHGVEDIRDWILTKLPLGPAYYPK 291 (415)
Q Consensus 263 vSA~~g~gv~eL~~~L~~~l~~~~~~~~~ 291 (415)
+|+....||+.+|..+...+..-||..|+
T Consensus 166 ~Sts~sINv~KIFK~vlAklFnL~~ti~~ 194 (205)
T KOG1673|consen 166 CSTSHSINVQKIFKIVLAKLFNLPWTIPE 194 (205)
T ss_pred eeccccccHHHHHHHHHHHHhCCceeccc
Confidence 99999999999999999999888887765
No 306
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.17 E-value=2.7e-10 Score=110.07 Aligned_cols=87 Identities=24% Similarity=0.308 Sum_probs=67.5
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCC------------------eeEEEEeCCCCchhh
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE------------------YQMILYDTPGIIEKK 177 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~------------------~~l~liDtpG~~~~~ 177 (415)
.+++|||.||||||||+|+++... ....++|.+|.++..++..-.+ ..+.|+|.+|+....
T Consensus 3 l~~GIVGlPNVGKSTlFnAlT~~~-a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 3 LKIGIVGLPNVGKSTLFNALTKAG-AEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred ceeEEecCCCCcHHHHHHHHHcCC-ccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 579999999999999999999988 5578999999988877643211 267899999997533
Q ss_pred --hhhHhHHHHHHHHhhhcccceEEEEecCCC
Q 014942 178 --IHMLDSMMMKNVRSAGINADCIVVLVDACK 207 (415)
Q Consensus 178 --~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~ 207 (415)
...|...| ..-++++|+++.|||+..
T Consensus 82 s~GeGLGNkF----L~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 82 SKGEGLGNKF----LDNIREVDAIIHVVRCFG 109 (372)
T ss_pred ccCCCcchHH----HHhhhhcCeEEEEEEecC
Confidence 23354444 344789999999999873
No 307
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.14 E-value=2.5e-10 Score=111.81 Aligned_cols=161 Identities=19% Similarity=0.128 Sum_probs=89.7
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCc----eeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHh
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQK----LSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~----~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~ 191 (415)
..|+|+|.+|+|||||+|+|.|-. -+.......||..+..... ..-..+.+||.||+....+ ....++ +. .
T Consensus 36 l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~-p~~pnv~lWDlPG~gt~~f-~~~~Yl-~~--~ 110 (376)
T PF05049_consen 36 LNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPH-PKFPNVTLWDLPGIGTPNF-PPEEYL-KE--V 110 (376)
T ss_dssp EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE--SS-TTEEEEEE--GGGSS---HHHHH-HH--T
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCC-CCCCCCeEEeCCCCCCCCC-CHHHHH-HH--c
Confidence 489999999999999999997631 1111222234444333222 2223699999999743322 223333 22 1
Q ss_pred hhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCC------------ChhH-HHHHH----HHHhhc
Q 014942 192 AGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI------------KPGE-IAKKL----EWYEKF 254 (415)
Q Consensus 192 ~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~------------~~~~-~~~~~----~~~~~~ 254 (415)
.+...|.+|++.+ ..+...+.++...++. .++|+.+|-+|+|.. ..+. +..+. +.+...
T Consensus 111 ~~~~yD~fiii~s--~rf~~ndv~La~~i~~--~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~ 186 (376)
T PF05049_consen 111 KFYRYDFFIIISS--ERFTENDVQLAKEIQR--MGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQKA 186 (376)
T ss_dssp TGGG-SEEEEEES--SS--HHHHHHHHHHHH--TT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHCT
T ss_pred cccccCEEEEEeC--CCCchhhHHHHHHHHH--cCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHHc
Confidence 3678898888765 3466777778777777 789999999999961 1111 22222 222222
Q ss_pred -CCCccEEEcccCC--CCCHHHHHHHHHhhCCCC
Q 014942 255 -TDVDEVIPVSAKY--GHGVEDIRDWILTKLPLG 285 (415)
Q Consensus 255 -~~~~~i~~vSA~~--g~gv~eL~~~L~~~l~~~ 285 (415)
....++|-+|+.. ......|.+.|.+.+|..
T Consensus 187 gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~ 220 (376)
T PF05049_consen 187 GVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAH 220 (376)
T ss_dssp T-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GG
T ss_pred CCCcCceEEEeCCCcccCChHHHHHHHHHHhHHH
Confidence 1334789999875 456888999999988863
No 308
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.14 E-value=4.7e-10 Score=115.48 Aligned_cols=126 Identities=18% Similarity=0.087 Sum_probs=79.8
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCC-CCceEEeEEEEEeCCCeeEEEEeCCCCchhhhh-hHhHHHHHHHHh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNK-PQTTRHRILGICSGPEYQMILYDTPGIIEKKIH-MLDSMMMKNVRS 191 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~-~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~-~l~~~~~~~~~~ 191 (415)
-+.+|+++|.+||||||++|+|++.+...++.. ++||+. ........+..+.+|||||+...... .....+...+..
T Consensus 117 fslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~-~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~ 195 (763)
T TIGR00993 117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSV-QEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKK 195 (763)
T ss_pred cceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEE-EEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHH
Confidence 345899999999999999999999876555543 566654 22233445778999999999653211 123334444444
Q ss_pred hhc--ccceEEEEecCCCCCc-hHHHHHHHHhcc-cC--CCCCEEEEEeCCCCCC
Q 014942 192 AGI--NADCIVVLVDACKAPE-RIDEILEEGVGD-HK--DKLPILLVLNKKDLIK 240 (415)
Q Consensus 192 ~~~--~aD~ii~VvD~~~~~~-~~~~~l~~~l~~-~~--~~~piilV~NK~Dl~~ 240 (415)
++. .+|++|||........ ..+....+.+.. +. --..+|||+|..|...
T Consensus 196 ~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 196 FIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred HHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 444 5899999986643222 122222222222 11 2356899999999875
No 309
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=99.13 E-value=1.5e-10 Score=106.75 Aligned_cols=171 Identities=22% Similarity=0.092 Sum_probs=109.3
Q ss_pred ccCCCCCCccEEEEEecCCCCHHHHHHHHhCCceee--eeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhh-hhHhH
Q 014942 107 YASHPNHKSGYVAVLGKPNVGKSTLANQMIGQKLSI--VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI-HMLDS 183 (415)
Q Consensus 107 ~~~~~~~~~~~V~ivG~~~vGKSSLln~l~~~~~~~--~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~-~~l~~ 183 (415)
..++|..+.+.++++|.+|||||||+|.++..+... ...+++.|+..... .-+..+.++|.||+....+ ..+..
T Consensus 128 ~~D~Pk~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f---~v~~~~~~vDlPG~~~a~y~~~~~~ 204 (320)
T KOG2486|consen 128 AEDCPKDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHF---HVGKSWYEVDLPGYGRAGYGFELPA 204 (320)
T ss_pred eccCCCCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeee---eccceEEEEecCCcccccCCccCcc
Confidence 445666677899999999999999999998766432 22366666554332 2344899999999422110 01111
Q ss_pred HHHHHHHhhh---cccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChhH------HHHHHHHHhhc
Q 014942 184 MMMKNVRSAG---INADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE------IAKKLEWYEKF 254 (415)
Q Consensus 184 ~~~~~~~~~~---~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~------~~~~~~~~~~~ 254 (415)
.+...+..|+ ++--.+++++|++.+....+....+++.+ .+.|+.+|+||||...... ...+...+...
T Consensus 205 d~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge--~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l 282 (320)
T KOG2486|consen 205 DWDKFTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGE--NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGL 282 (320)
T ss_pred hHhHhHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhh--cCCCeEEeeehhhhhhhccccccCccccceeehhhc
Confidence 1122222222 23345677889999998888888888888 8999999999999853211 11111111111
Q ss_pred C-----CCccEEEcccCCCCCHHHHHHHHHhhC
Q 014942 255 T-----DVDEVIPVSAKYGHGVEDIRDWILTKL 282 (415)
Q Consensus 255 ~-----~~~~i~~vSA~~g~gv~eL~~~L~~~l 282 (415)
. ...|.+.+|+.++.|++.|+-.+.+..
T Consensus 283 ~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q~~ 315 (320)
T KOG2486|consen 283 IRGVFLVDLPWIYVSSVTSLGRDLLLLHIAQLR 315 (320)
T ss_pred cccceeccCCceeeecccccCceeeeeehhhhh
Confidence 1 112566799999999999887776543
No 310
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=99.11 E-value=1.6e-10 Score=109.69 Aligned_cols=55 Identities=27% Similarity=0.432 Sum_probs=46.7
Q ss_pred CCEEEEEeCCCCCC--hhHHHHHHHHHhhcCCCccEEEcccCCCCCHHHHHHHHHhh
Q 014942 227 LPILLVLNKKDLIK--PGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTK 281 (415)
Q Consensus 227 ~piilV~NK~Dl~~--~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gv~eL~~~L~~~ 281 (415)
.+-++|+||+|+.. ..++....+.+....+..+++++||++|.|+++|++||.+.
T Consensus 231 ~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 231 AASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred cCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 55699999999986 34567777777777778899999999999999999999874
No 311
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=99.10 E-value=1.2e-09 Score=96.49 Aligned_cols=79 Identities=20% Similarity=0.196 Sum_probs=54.9
Q ss_pred eEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCCh--hHHHHHHHHHhhcCCCccEEEcccCCCCCHHHHH
Q 014942 198 CIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP--GEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIR 275 (415)
Q Consensus 198 ~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~--~~~~~~~~~~~~~~~~~~i~~vSA~~g~gv~eL~ 275 (415)
.-|+|+|.+.+...-.. .-.. --..=++|+||.|+.+. .+++.+.+...+..+..+++.+|+++|+|+++++
T Consensus 120 ~~v~VidvteGe~~P~K-~gP~-----i~~aDllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~ 193 (202)
T COG0378 120 LRVVVIDVTEGEDIPRK-GGPG-----IFKADLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWL 193 (202)
T ss_pred eEEEEEECCCCCCCccc-CCCc-----eeEeeEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHH
Confidence 67778887766422110 0000 00124799999999864 3346666777777788899999999999999999
Q ss_pred HHHHhhC
Q 014942 276 DWILTKL 282 (415)
Q Consensus 276 ~~L~~~l 282 (415)
+|+...+
T Consensus 194 ~~i~~~~ 200 (202)
T COG0378 194 RFIEPQA 200 (202)
T ss_pred HHHHhhc
Confidence 9997654
No 312
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.09 E-value=6.3e-10 Score=102.85 Aligned_cols=150 Identities=20% Similarity=0.290 Sum_probs=86.5
Q ss_pred CCccEEEEEecCCCCHHHHHHHHh------CCceeeeeCCCC--ce------------------EEeEEEE---------
Q 014942 113 HKSGYVAVLGKPNVGKSTLANQMI------GQKLSIVTNKPQ--TT------------------RHRILGI--------- 157 (415)
Q Consensus 113 ~~~~~V~ivG~~~vGKSSLln~l~------~~~~~~~~~~~~--tt------------------~~~~~~~--------- 157 (415)
-+...|+|.|+||+|||||+++|. |.++....-.|. .| ..++...
T Consensus 27 g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGl 106 (266)
T PF03308_consen 27 GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGL 106 (266)
T ss_dssp T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHH
T ss_pred CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCc
Confidence 356799999999999999999985 445443322221 11 1111111
Q ss_pred ----------EeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhcccceEEEEecCCCCC--chHHHHHHHHhcccCC
Q 014942 158 ----------CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP--ERIDEILEEGVGDHKD 225 (415)
Q Consensus 158 ----------~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~~ 225 (415)
+...++.++|+.|-|..+.... ...-||.+++|+-...+. +....-+.++
T Consensus 107 s~~t~~~v~ll~aaG~D~IiiETVGvGQsE~~------------I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi------ 168 (266)
T PF03308_consen 107 SRATRDAVRLLDAAGFDVIIIETVGVGQSEVD------------IADMADTVVLVLVPGLGDEIQAIKAGIMEI------ 168 (266)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEEEESSSTHHHH------------HHTTSSEEEEEEESSTCCCCCTB-TTHHHH------
T ss_pred cHhHHHHHHHHHHcCCCEEEEeCCCCCccHHH------------HHHhcCeEEEEecCCCccHHHHHhhhhhhh------
Confidence 2234568999999998653221 146789999998765432 3333333333
Q ss_pred CCCEEEEEeCCCCCChhHHH-HHHHHHhhc---C--CCccEEEcccCCCCCHHHHHHHHHhhC
Q 014942 226 KLPILLVLNKKDLIKPGEIA-KKLEWYEKF---T--DVDEVIPVSAKYGHGVEDIRDWILTKL 282 (415)
Q Consensus 226 ~~piilV~NK~Dl~~~~~~~-~~~~~~~~~---~--~~~~i~~vSA~~g~gv~eL~~~L~~~l 282 (415)
+=++|+||+|+...+... +....+... . ...|++.+||.+|.|+++|.+.|.++.
T Consensus 169 --aDi~vVNKaD~~gA~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~ 229 (266)
T PF03308_consen 169 --ADIFVVNKADRPGADRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHR 229 (266)
T ss_dssp ---SEEEEE--SHHHHHHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred --ccEEEEeCCChHHHHHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 338999999965433322 222222211 1 124899999999999999999998754
No 313
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.08 E-value=2e-09 Score=102.80 Aligned_cols=134 Identities=13% Similarity=0.192 Sum_probs=77.9
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCceeeee-C-------CCCce-EEeEEEEEeCC--CeeEEEEeCCCCchhh-----hh
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVT-N-------KPQTT-RHRILGICSGP--EYQMILYDTPGIIEKK-----IH 179 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~~~~~~-~-------~~~tt-~~~~~~~~~~~--~~~l~liDtpG~~~~~-----~~ 179 (415)
.+|+|+|.+|+|||||+|.|++....... . ...++ .......+... ...+.++||||+.+.- ..
T Consensus 5 fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~~ 84 (281)
T PF00735_consen 5 FNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCWE 84 (281)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhhH
Confidence 47999999999999999999987654332 0 11111 11112222323 3478899999985411 12
Q ss_pred hHhHHHHHHHHhhh-------------cccceEEEEecCC-CCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHH
Q 014942 180 MLDSMMMKNVRSAG-------------INADCIVVLVDAC-KAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA 245 (415)
Q Consensus 180 ~l~~~~~~~~~~~~-------------~~aD~ii~VvD~~-~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~ 245 (415)
.+..+...+...++ ...|++||+++++ ++..+.+...+..+. ...++|-|+.|+|.....++.
T Consensus 85 ~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls---~~vNvIPvIaKaD~lt~~el~ 161 (281)
T PF00735_consen 85 PIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLS---KRVNVIPVIAKADTLTPEELQ 161 (281)
T ss_dssp HHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHT---TTSEEEEEESTGGGS-HHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhc---ccccEEeEEecccccCHHHHH
Confidence 22222222222221 2579999999986 456777766655554 468899999999999888776
Q ss_pred HHHHHHh
Q 014942 246 KKLEWYE 252 (415)
Q Consensus 246 ~~~~~~~ 252 (415)
.....+.
T Consensus 162 ~~k~~i~ 168 (281)
T PF00735_consen 162 AFKQRIR 168 (281)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6555443
No 314
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.08 E-value=6.4e-10 Score=100.99 Aligned_cols=90 Identities=31% Similarity=0.362 Sum_probs=71.2
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhcc
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (415)
.+|+++|.|.||||||+..+.+..-. ...+..||...+.+++.+.+..+.++|.||+.......-. --+++.+..+.
T Consensus 63 aRValIGfPSVGKStlLs~iT~T~Se-aA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkG--RGRQviavArt 139 (364)
T KOG1486|consen 63 ARVALIGFPSVGKSTLLSKITSTHSE-AASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKG--RGRQVIAVART 139 (364)
T ss_pred eEEEEecCCCccHHHHHHHhhcchhh-hhceeeeEEEeecceEEecCceEEEecCcccccccccCCC--CCceEEEEeec
Confidence 38999999999999999999876643 4567889999999999999999999999999764322111 11234455678
Q ss_pred cceEEEEecCCCC
Q 014942 196 ADCIVVLVDACKA 208 (415)
Q Consensus 196 aD~ii~VvD~~~~ 208 (415)
||++++|.|++.+
T Consensus 140 aDlilMvLDatk~ 152 (364)
T KOG1486|consen 140 ADLILMVLDATKS 152 (364)
T ss_pred ccEEEEEecCCcc
Confidence 9999999999865
No 315
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.08 E-value=1.4e-09 Score=98.97 Aligned_cols=82 Identities=21% Similarity=0.198 Sum_probs=56.5
Q ss_pred cceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCCh--hHHHHHHHHHhhcCCCccEEEcccCCCCCHHH
Q 014942 196 ADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP--GEIAKKLEWYEKFTDVDEVIPVSAKYGHGVED 273 (415)
Q Consensus 196 aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~--~~~~~~~~~~~~~~~~~~i~~vSA~~g~gv~e 273 (415)
+|.+|.|+|+.+....... ... . -...-++++||+|+.+. ..+....+......+..+++++||++|.|+++
T Consensus 113 ~~~~i~vvD~~~~~~~~~~-~~~---q--i~~ad~~~~~k~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~e 186 (199)
T TIGR00101 113 ADLTIFVIDVAAGDKIPRK-GGP---G--ITRSDLLVINKIDLAPMVGADLGVMERDAKKMRGEKPFIFTNLKTKEGLDT 186 (199)
T ss_pred hCcEEEEEEcchhhhhhhh-hHh---H--hhhccEEEEEhhhccccccccHHHHHHHHHHhCCCCCEEEEECCCCCCHHH
Confidence 5779999999765432211 111 1 11223899999999852 34444455555555667999999999999999
Q ss_pred HHHHHHhhCC
Q 014942 274 IRDWILTKLP 283 (415)
Q Consensus 274 L~~~L~~~l~ 283 (415)
++++|.+.+.
T Consensus 187 l~~~i~~~~~ 196 (199)
T TIGR00101 187 VIDWIEHYAL 196 (199)
T ss_pred HHHHHHhhcC
Confidence 9999997654
No 316
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.04 E-value=2.3e-11 Score=105.33 Aligned_cols=156 Identities=17% Similarity=0.228 Sum_probs=109.6
Q ss_pred EEEEEecCCCCHHHHHHHHhCCceeee-eCCCCceEEeEEEEEeCCC---eeEEEEeCCCCchhhhhhHhHHHHHHHHhh
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQKLSIV-TNKPQTTRHRILGICSGPE---YQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~~~~~~-~~~~~tt~~~~~~~~~~~~---~~l~liDtpG~~~~~~~~l~~~~~~~~~~~ 192 (415)
++.|+|.-++|||+++.+.+...+... ....+ .+....++.+++ .++.+||..| ++.+.+| .+-+
T Consensus 27 k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIg--vdfalkVl~wdd~t~vRlqLwdIag--Qerfg~m-------trVy 95 (229)
T KOG4423|consen 27 KVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIG--VDFALKVLQWDDKTIVRLQLWDIAG--QERFGNM-------TRVY 95 (229)
T ss_pred hhheeeeccccchhHHHHHHHHHHHHHHHHHHh--HHHHHHHhccChHHHHHHHHhcchh--hhhhcce-------EEEE
Confidence 899999999999999999987665410 01111 112222333333 3678999999 5555544 4456
Q ss_pred hcccceEEEEecCCCCC--chHHHHHHHHhccc----CCCCCEEEEEeCCCCCChhHHH--HHHHHHhhcCCCccEEEcc
Q 014942 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDH----KDKLPILLVLNKKDLIKPGEIA--KKLEWYEKFTDVDEVIPVS 264 (415)
Q Consensus 193 ~~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~----~~~~piilV~NK~Dl~~~~~~~--~~~~~~~~~~~~~~i~~vS 264 (415)
++.+.+..+|+|.+++. +....|..++-... ....|+++..||||..+..... .....+.+..++...+++|
T Consensus 96 ykea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets 175 (229)
T KOG4423|consen 96 YKEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETS 175 (229)
T ss_pred ecCCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeec
Confidence 88999999999998765 44445554433221 2457799999999987543332 4566677778888999999
Q ss_pred cCCCCCHHHHHHHHHhhCC
Q 014942 265 AKYGHGVEDIRDWILTKLP 283 (415)
Q Consensus 265 A~~g~gv~eL~~~L~~~l~ 283 (415)
|+.+.++++..+.|++.+.
T Consensus 176 ~Kenkni~Ea~r~lVe~~l 194 (229)
T KOG4423|consen 176 AKENKNIPEAQRELVEKIL 194 (229)
T ss_pred cccccChhHHHHHHHHHHH
Confidence 9999999999999988653
No 317
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.00 E-value=9.1e-10 Score=96.28 Aligned_cols=56 Identities=30% Similarity=0.412 Sum_probs=46.9
Q ss_pred ccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCC
Q 014942 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGI 173 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~ 173 (415)
...|+++|.||||||||+|+|.+.+...++..+++|+....... +..+.++||||+
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~~---~~~~~liDtPGi 157 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYITL---MKRIYLIDCPGV 157 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEEc---CCCEEEEECcCC
Confidence 45789999999999999999999998889999999987654332 235899999995
No 318
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.98 E-value=5.7e-10 Score=107.59 Aligned_cols=121 Identities=18% Similarity=0.170 Sum_probs=88.5
Q ss_pred cCCCCCCccEEEEEecCCCCHHHHHHHHhCCceee-----------------eeCCCCceEEeEEEEEeCCCeeEEEEeC
Q 014942 108 ASHPNHKSGYVAVLGKPNVGKSTLANQMIGQKLSI-----------------VTNKPQTTRHRILGICSGPEYQMILYDT 170 (415)
Q Consensus 108 ~~~~~~~~~~V~ivG~~~vGKSSLln~l~~~~~~~-----------------~~~~~~tt~~~~~~~~~~~~~~l~liDt 170 (415)
++++..+-..|+|+.+..+||||...+++.....+ .....|.|.......+.+.++++++|||
T Consensus 30 ~~p~~akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidt 109 (753)
T KOG0464|consen 30 INPAIAKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDT 109 (753)
T ss_pred CCCchhhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecC
Confidence 34444566689999999999999999986322111 1122344555555568899999999999
Q ss_pred CCCchhhhhhHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCC
Q 014942 171 PGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI 239 (415)
Q Consensus 171 pG~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~ 239 (415)
||+.+... .+.+.++--|+++.|+|++.+.+.+...+++.... .++|.+..+||+|..
T Consensus 110 pghvdf~l---------everclrvldgavav~dasagve~qtltvwrqadk--~~ip~~~finkmdk~ 167 (753)
T KOG0464|consen 110 PGHVDFRL---------EVERCLRVLDGAVAVFDASAGVEAQTLTVWRQADK--FKIPAHCFINKMDKL 167 (753)
T ss_pred CCcceEEE---------EHHHHHHHhcCeEEEEeccCCcccceeeeehhccc--cCCchhhhhhhhhhh
Confidence 99754221 13344677899999999999988877777776666 789999999999975
No 319
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.97 E-value=6.4e-09 Score=99.31 Aligned_cols=133 Identities=20% Similarity=0.296 Sum_probs=86.3
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCC-------------------------------
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE------------------------------- 162 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~------------------------------- 162 (415)
..|.|.++|.-..||||+++.|+...+......|..|.+....+..+..
T Consensus 57 ~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf 136 (532)
T KOG1954|consen 57 AKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRF 136 (532)
T ss_pred cCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHH
Confidence 3468999999999999999999998876433333333333332221110
Q ss_pred ----------eeEEEEeCCCCchhhhhhHhHH--HHHHHHhhhcccceEEEEecCCCCC-chHHHHHHHHhcccCCCCCE
Q 014942 163 ----------YQMILYDTPGIIEKKIHMLDSM--MMKNVRSAGINADCIVVLVDACKAP-ERIDEILEEGVGDHKDKLPI 229 (415)
Q Consensus 163 ----------~~l~liDtpG~~~~~~~~l~~~--~~~~~~~~~~~aD~ii~VvD~~~~~-~~~~~~l~~~l~~~~~~~pi 229 (415)
-.+.++||||+.......+.+. +.....-....||.|++++|+..-. ......+...++. ..-.+
T Consensus 137 ~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG--~Edki 214 (532)
T KOG1954|consen 137 MCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKG--HEDKI 214 (532)
T ss_pred HHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhC--Cccee
Confidence 1689999999976443322211 2333444578999999999986422 3344445555555 55678
Q ss_pred EEEEeCCCCCChhHHHHHH
Q 014942 230 LLVLNKKDLIKPGEIAKKL 248 (415)
Q Consensus 230 ilV~NK~Dl~~~~~~~~~~ 248 (415)
-+|+||.|.++..++....
T Consensus 215 RVVLNKADqVdtqqLmRVy 233 (532)
T KOG1954|consen 215 RVVLNKADQVDTQQLMRVY 233 (532)
T ss_pred EEEeccccccCHHHHHHHH
Confidence 8999999999877765443
No 320
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.96 E-value=1.3e-09 Score=96.77 Aligned_cols=56 Identities=36% Similarity=0.421 Sum_probs=48.2
Q ss_pred ccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCC
Q 014942 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGI 173 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~ 173 (415)
..+|+++|.||||||||+|+|.+.+...++..|++|+........ .++.++||||+
T Consensus 117 ~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~~---~~~~l~DtPGi 172 (172)
T cd04178 117 SITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHLD---KKVKLLDSPGI 172 (172)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEeC---CCEEEEECcCC
Confidence 358999999999999999999999988899999999986654432 37899999995
No 321
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.94 E-value=4.2e-09 Score=91.83 Aligned_cols=92 Identities=26% Similarity=0.184 Sum_probs=66.3
Q ss_pred HHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHHHHHHHhhcCCCccEEEcccCCC
Q 014942 189 VRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYG 268 (415)
Q Consensus 189 ~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g 268 (415)
.+..+.++|++|+|+|++++.......+...+.. .++|+++|+||+|+.......... .+... ...+++++||++|
T Consensus 6 ~~~i~~~aD~vl~V~D~~~~~~~~~~~l~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~-~~~~~-~~~~~~~iSa~~~ 81 (156)
T cd01859 6 VRRIIKESDVVLEVLDARDPELTRSRKLERYVLE--LGKKLLIVLNKADLVPKEVLEKWK-SIKES-EGIPVVYVSAKER 81 (156)
T ss_pred HHHHHhhCCEEEEEeeCCCCcccCCHHHHHHHHh--CCCcEEEEEEhHHhCCHHHHHHHH-HHHHh-CCCcEEEEEcccc
Confidence 4555778999999999987654444444444443 578999999999997654333222 22222 2347899999999
Q ss_pred CCHHHHHHHHHhhCCC
Q 014942 269 HGVEDIRDWILTKLPL 284 (415)
Q Consensus 269 ~gv~eL~~~L~~~l~~ 284 (415)
.|+++|++.|.+.++.
T Consensus 82 ~gi~~L~~~l~~~~~~ 97 (156)
T cd01859 82 LGTKILRRTIKELAKI 97 (156)
T ss_pred ccHHHHHHHHHHHHhh
Confidence 9999999999998875
No 322
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.93 E-value=1.4e-09 Score=104.13 Aligned_cols=156 Identities=22% Similarity=0.238 Sum_probs=95.6
Q ss_pred HHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHHHHHHHhhcCCCccEEEccc
Q 014942 186 MKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSA 265 (415)
Q Consensus 186 ~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA 265 (415)
.+++...+..+|++++|+|++.+.......+.+.+ .++|+++|+||+|+.+........+.+... ..+++++||
T Consensus 12 ~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l----~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~--~~~vi~iSa 85 (276)
T TIGR03596 12 RREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIR----GNKPRLIVLNKADLADPAVTKQWLKYFEEK--GIKALAINA 85 (276)
T ss_pred HHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHH----CCCCEEEEEEccccCCHHHHHHHHHHHHHc--CCeEEEEEC
Confidence 34566678999999999999877655444555544 357999999999997654444444444331 236899999
Q ss_pred CCCCCHHHHHHHHHhhCCCCCCCCCCCCccccCCchhHHHHHHHHHHHHhhcCCCCCceEEEEEEEEEe------cCCCe
Q 014942 266 KYGHGVEDIRDWILTKLPLGPAYYPKFQDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKT------RPTAK 339 (415)
Q Consensus 266 ~~g~gv~eL~~~L~~~l~~~~~~~~~~~~~~t~~~~~~~i~eiireki~~~~~~eipys~~v~i~~~~~------~~~~~ 339 (415)
+++.|+++|++.|.+.++........ ....... + +++....+++|+|+.+|.+.... .++ .
T Consensus 86 ~~~~gi~~L~~~i~~~~~~~~~~~~~--~~~~~~~--------~--~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g-~ 152 (276)
T TIGR03596 86 KKGKGVKKIIKAAKKLLKEKNEKLKA--KGLKNRP--------I--RAMIVGIPNVGKSTLINRLAGKKVAKVGNRPG-V 152 (276)
T ss_pred CCcccHHHHHHHHHHHHHHhhhhhhh--ccCCCCC--------e--EEEEECCCCCCHHHHHHHHhCCCccccCCCCC-e
Confidence 99999999999999887653211100 0000000 0 12233467777777766554322 122 2
Q ss_pred eEEEEEEEEeeCCceeEEeecCCh
Q 014942 340 DFIQVEIVVEKNSQKIILIGKGGK 363 (415)
Q Consensus 340 ~~i~~~~~~~r~~q~~iiiG~~g~ 363 (415)
....+.+.+ +....++++.|-
T Consensus 153 T~~~~~~~~---~~~~~l~DtPG~ 173 (276)
T TIGR03596 153 TKGQQWIKL---SDGLELLDTPGI 173 (276)
T ss_pred ecceEEEEe---CCCEEEEECCCc
Confidence 222222222 346788898885
No 323
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=98.92 E-value=4e-09 Score=107.07 Aligned_cols=121 Identities=21% Similarity=0.302 Sum_probs=81.5
Q ss_pred cCCCCCCccEEEEEecCCCCHHHHHHHHhCCceeeee-------CCC---------CceEE--eEEEEE---eCCCeeEE
Q 014942 108 ASHPNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVT-------NKP---------QTTRH--RILGIC---SGPEYQMI 166 (415)
Q Consensus 108 ~~~~~~~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~-------~~~---------~tt~~--~~~~~~---~~~~~~l~ 166 (415)
.-..+.+...|+++|+-.+|||+|+..|........+ .++ +.+.. +....+ ....+-++
T Consensus 121 l~~~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~n 200 (971)
T KOG0468|consen 121 LMDNPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMN 200 (971)
T ss_pred hccCcceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeee
Confidence 3344456668999999999999999999865432110 000 11110 111112 22345688
Q ss_pred EEeCCCCchhhhhhHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCC
Q 014942 167 LYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI 239 (415)
Q Consensus 167 liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~ 239 (415)
++||||+.. +...+...++.+|++++|+|+..+..-..+.+....-+ .+.|+++|+||+|++
T Consensus 201 ilDTPGHVn---------F~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq--~~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 201 ILDTPGHVN---------FSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQ--NRLPIVVVINKVDRL 262 (971)
T ss_pred eecCCCccc---------chHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHh--ccCcEEEEEehhHHH
Confidence 999999754 34445666899999999999999886666655554444 689999999999974
No 324
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.91 E-value=1.5e-08 Score=95.03 Aligned_cols=156 Identities=20% Similarity=0.295 Sum_probs=92.2
Q ss_pred CCCCCccEEEEEecCCCCHHHHHHHHh------CCceeeeeCCCC--ceEEe---------------EEEE---------
Q 014942 110 HPNHKSGYVAVLGKPNVGKSTLANQMI------GQKLSIVTNKPQ--TTRHR---------------ILGI--------- 157 (415)
Q Consensus 110 ~~~~~~~~V~ivG~~~vGKSSLln~l~------~~~~~~~~~~~~--tt~~~---------------~~~~--------- 157 (415)
+..-+...|+|.|.||+|||||+.+|. |.+++...-.|. .|.-. ...+
T Consensus 46 p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~l 125 (323)
T COG1703 46 PRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTL 125 (323)
T ss_pred hcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccc
Confidence 334466799999999999999999985 344443322222 11100 0000
Q ss_pred -------------EeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccC
Q 014942 158 -------------CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHK 224 (415)
Q Consensus 158 -------------~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~ 224 (415)
+.-.++.++|+.|-|..+..-. ...-+|.+++|.=..-+.. .+.+..-+
T Consensus 126 GGlS~at~~~i~~ldAaG~DvIIVETVGvGQsev~------------I~~~aDt~~~v~~pg~GD~--~Q~iK~Gi---- 187 (323)
T COG1703 126 GGLSRATREAIKLLDAAGYDVIIVETVGVGQSEVD------------IANMADTFLVVMIPGAGDD--LQGIKAGI---- 187 (323)
T ss_pred hhhhHHHHHHHHHHHhcCCCEEEEEecCCCcchhH------------HhhhcceEEEEecCCCCcH--HHHHHhhh----
Confidence 2233468899999987552211 1356888888875443321 11122111
Q ss_pred CCCCEEEEEeCCCCCChhH----HHHHHHHH----hhcCCCccEEEcccCCCCCHHHHHHHHHhhCC
Q 014942 225 DKLPILLVLNKKDLIKPGE----IAKKLEWY----EKFTDVDEVIPVSAKYGHGVEDIRDWILTKLP 283 (415)
Q Consensus 225 ~~~piilV~NK~Dl~~~~~----~~~~~~~~----~~~~~~~~i~~vSA~~g~gv~eL~~~L~~~l~ 283 (415)
-..-=|+|+||.|+...+. +...+... .......+++.+||.+|+|+++|++.|.+...
T Consensus 188 mEiaDi~vINKaD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~ 254 (323)
T COG1703 188 MEIADIIVINKADRKGAEKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRK 254 (323)
T ss_pred hhhhheeeEeccChhhHHHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHH
Confidence 1233489999999754322 12222222 12223458999999999999999999988654
No 325
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.89 E-value=2.4e-09 Score=97.73 Aligned_cols=156 Identities=26% Similarity=0.327 Sum_probs=111.1
Q ss_pred EEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhccc
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~a 196 (415)
+|.++|.|.+|||||+..|.+..- .+..+.+||..++.+.....+.++.+.|.||+.+...+.-.+ -+++....+.|
T Consensus 61 ~vg~vgFPSvGksTl~~~l~g~~s-~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgr--g~qviavartc 137 (358)
T KOG1487|consen 61 RVGFVGFPSVGKSTLLSKLTGTFS-EVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGR--GKQVIAVARTC 137 (358)
T ss_pred eeeEEecCccchhhhhhhhcCCCC-ccccccceeEEEecceEeccccceeeecCcchhcccccCCCC--ccEEEEEeecc
Confidence 799999999999999999998654 467888999999999999999999999999997644332111 12344456789
Q ss_pred ceEEEEecCCCCCch--------------------------------------HHH-HHHHH------------------
Q 014942 197 DCIVVLVDACKAPER--------------------------------------IDE-ILEEG------------------ 219 (415)
Q Consensus 197 D~ii~VvD~~~~~~~--------------------------------------~~~-~l~~~------------------ 219 (415)
+++++|.|+..+... ++. .....
T Consensus 138 nli~~vld~~kp~~hk~~ie~eleg~girlnk~pp~i~~kkKdkgGInlt~~~LdlD~~rsil~eyR~hsAdi~Lr~DaT 217 (358)
T KOG1487|consen 138 NLIFIVLDVLKPLSHKKIIEKELEGFGIRLNKQPPNIGTKKKDKGGINLTGTHLDLDLQRSILSEYRIHSADIALRFDAT 217 (358)
T ss_pred cEEEEEeeccCcccHHHHHHHhhhcceeeccCCCCCccccccccCceeeecchhhHHHHHHHHHHhhhcchheeeecCcc
Confidence 999999998765311 000 00000
Q ss_pred -------hcccCCCCCEEEEEeCCCCCChhHHHHHHHHHhhcCCCccEEEcccCCCCCHHHHHHHHHhhC
Q 014942 220 -------VGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKL 282 (415)
Q Consensus 220 -------l~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gv~eL~~~L~~~l 282 (415)
+.....-.|.+.++||+|-..-+++.- .......+++||.++.|+++|++.+-+.+
T Consensus 218 ~DdLIdvVegnr~yVp~iyvLNkIdsISiEELdi-------i~~iphavpISA~~~wn~d~lL~~mweyL 280 (358)
T KOG1487|consen 218 ADDLIDVVEGNRIYVPCIYVLNKIDSISIEELDI-------IYTIPHAVPISAHTGWNFDKLLEKMWEYL 280 (358)
T ss_pred hhhhhhhhccCceeeeeeeeecccceeeeeccce-------eeeccceeecccccccchHHHHHHHhhcc
Confidence 001012468899999999775443321 12334679999999999999999998866
No 326
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.85 E-value=5.2e-09 Score=89.80 Aligned_cols=55 Identities=35% Similarity=0.594 Sum_probs=46.7
Q ss_pred EEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCc
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGII 174 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~ 174 (415)
+++++|.+|||||||+|+|++.....++..+++|++.....+.. .+.+|||||+.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~DtpG~~ 139 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFLTP---TITLCDCPGLV 139 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEeCC---CEEEEECCCcC
Confidence 89999999999999999999998877888899998865544422 68999999974
No 327
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.83 E-value=1.9e-08 Score=103.76 Aligned_cols=114 Identities=22% Similarity=0.239 Sum_probs=82.7
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceE---------------EeEEEEEeCCCeeEEEEeCCCCchhhh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTR---------------HRILGICSGPEYQMILYDTPGIIEKKI 178 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~---------------~~~~~~~~~~~~~l~liDtpG~~~~~~ 178 (415)
....+|++-+...|||||+..|+..+..+.+...|+-| .......-..++.+++||+||+.+ |
T Consensus 8 ~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvd--f 85 (887)
T KOG0467|consen 8 GIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVD--F 85 (887)
T ss_pred ceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccc--h
Confidence 34489999999999999999998766544333333221 111111234678999999999765 2
Q ss_pred hhHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCC
Q 014942 179 HMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDL 238 (415)
Q Consensus 179 ~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl 238 (415)
...+.++.+-+|.+++++|+..+...++..+.+.... .+...++|+||+|.
T Consensus 86 -------~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~--~~~~~~lvinkidr 136 (887)
T KOG0467|consen 86 -------SSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWI--EGLKPILVINKIDR 136 (887)
T ss_pred -------hhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHH--ccCceEEEEehhhh
Confidence 2335566789999999999999998888777765444 67788999999995
No 328
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.82 E-value=6e-09 Score=101.67 Aligned_cols=61 Identities=43% Similarity=0.603 Sum_probs=52.7
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~ 177 (415)
+..+|.++|.||||||||||+|++.+...++..||+|+......... .+.++||||+....
T Consensus 131 ~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~~---~i~LlDtPGii~~~ 191 (322)
T COG1161 131 RKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLDD---GIYLLDTPGIIPPK 191 (322)
T ss_pred cceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcCC---CeEEecCCCcCCCC
Confidence 44579999999999999999999999999999999999877665554 58999999986533
No 329
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.81 E-value=2.8e-08 Score=95.46 Aligned_cols=159 Identities=19% Similarity=0.222 Sum_probs=100.1
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeee-------------eCCCCceEEeEEEEE----------------------
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIV-------------TNKPQTTRHRILGIC---------------------- 158 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~-------------~~~~~tt~~~~~~~~---------------------- 158 (415)
....|++.|+.++|||||+-.|........ .-..+.|.+....++
T Consensus 116 ~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~~v 195 (527)
T COG5258 116 EHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKAAV 195 (527)
T ss_pred ceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHhHh
Confidence 345799999999999999998864332100 000111111111111
Q ss_pred -eCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhh--hcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeC
Q 014942 159 -SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA--GINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNK 235 (415)
Q Consensus 159 -~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~--~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK 235 (415)
...+.-+.|+||.|+ +++ .+.+... -+..|-.++++-+.++.+......+-+.-. ...|+|+|++|
T Consensus 196 v~~aDklVsfVDtvGH--Epw-------LrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~a--~~lPviVvvTK 264 (527)
T COG5258 196 VKRADKLVSFVDTVGH--EPW-------LRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIALA--MELPVIVVVTK 264 (527)
T ss_pred hhhcccEEEEEecCCc--cHH-------HHHHHHHHhccccceEEEEEEccCCcchhhhHhhhhhhh--hcCCEEEEEEe
Confidence 112235789999994 332 2222221 357899999999999998777766655544 68999999999
Q ss_pred CCCCChhHHHHHHHHHhh---------------------------cCCCccEEEcccCCCCCHHHHHHHHHhhCCC
Q 014942 236 KDLIKPGEIAKKLEWYEK---------------------------FTDVDEVIPVSAKYGHGVEDIRDWILTKLPL 284 (415)
Q Consensus 236 ~Dl~~~~~~~~~~~~~~~---------------------------~~~~~~i~~vSA~~g~gv~eL~~~L~~~l~~ 284 (415)
+|+.+.+.+....+.+.. .....|+|.+|+.+|.|++-|.+.+. .+|.
T Consensus 265 ~D~~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~-~Lp~ 339 (527)
T COG5258 265 IDMVPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFL-LLPK 339 (527)
T ss_pred cccCcHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHHH-hCCc
Confidence 999876544333222211 11256999999999999977666555 4444
No 330
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.80 E-value=2e-08 Score=90.65 Aligned_cols=95 Identities=25% Similarity=0.287 Sum_probs=64.8
Q ss_pred HHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHHHH-HHH-----hh-cCCCc
Q 014942 186 MKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKL-EWY-----EK-FTDVD 258 (415)
Q Consensus 186 ~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~~~-~~~-----~~-~~~~~ 258 (415)
...+..++..+|++++|+|+++........+.. .. .+.|+++|+||+|+.......... ... .. .....
T Consensus 25 ~~~l~~~~~~ad~il~VvD~~~~~~~~~~~l~~--~~--~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (190)
T cd01855 25 LNLLSSISPKKALVVHVVDIFDFPGSLIPRLRL--FG--GNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGLKPK 100 (190)
T ss_pred HHHHHhcccCCcEEEEEEECccCCCccchhHHH--hc--CCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcCCCcc
Confidence 445667789999999999998765333333321 12 468999999999997533221111 111 11 11224
Q ss_pred cEEEcccCCCCCHHHHHHHHHhhCCC
Q 014942 259 EVIPVSAKYGHGVEDIRDWILTKLPL 284 (415)
Q Consensus 259 ~i~~vSA~~g~gv~eL~~~L~~~l~~ 284 (415)
+++++||++|.|+++|+++|.+.++.
T Consensus 101 ~i~~vSA~~~~gi~eL~~~l~~~l~~ 126 (190)
T cd01855 101 DVILISAKKGWGVEELINAIKKLAKK 126 (190)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhc
Confidence 68999999999999999999998863
No 331
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.79 E-value=1.7e-07 Score=90.32 Aligned_cols=135 Identities=15% Similarity=0.172 Sum_probs=84.7
Q ss_pred ccEEEEEecCCCCHHHHHHHHhCCceeeee----CCC-----CceEEeEEEEEeCCC--eeEEEEeCCCCchh-----hh
Q 014942 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVT----NKP-----QTTRHRILGICSGPE--YQMILYDTPGIIEK-----KI 178 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~~~~~~~~~----~~~-----~tt~~~~~~~~~~~~--~~l~liDtpG~~~~-----~~ 178 (415)
...|.++|.+|.|||||+|.|++....... ..+ ..........+..++ .+++++||||+.+. .+
T Consensus 23 ~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~w 102 (373)
T COG5019 23 DFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKCW 102 (373)
T ss_pred ceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccccH
Confidence 348999999999999999999987432111 111 111222222333344 46889999998642 12
Q ss_pred hhHhHHHHHHHHhhh--------------cccceEEEEecCC-CCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChhH
Q 014942 179 HMLDSMMMKNVRSAG--------------INADCIVVLVDAC-KAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE 243 (415)
Q Consensus 179 ~~l~~~~~~~~~~~~--------------~~aD~ii~VvD~~-~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~ 243 (415)
..+-.++..+...++ ..++++||.+..+ ++....+...+..+. ..+.+|-|+-|+|.....+
T Consensus 103 e~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls---~~vNlIPVI~KaD~lT~~E 179 (373)
T COG5019 103 EPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLS---KRVNLIPVIAKADTLTDDE 179 (373)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHh---cccCeeeeeeccccCCHHH
Confidence 222222323333322 2479999999865 556777766555443 4688999999999998887
Q ss_pred HHHHHHHHh
Q 014942 244 IAKKLEWYE 252 (415)
Q Consensus 244 ~~~~~~~~~ 252 (415)
+....+.+.
T Consensus 180 l~~~K~~I~ 188 (373)
T COG5019 180 LAEFKERIR 188 (373)
T ss_pred HHHHHHHHH
Confidence 766554443
No 332
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.78 E-value=1.2e-08 Score=89.02 Aligned_cols=57 Identities=40% Similarity=0.477 Sum_probs=48.1
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCC
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGI 173 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~ 173 (415)
+...++++|.||+|||||+|+|++.....++..+++|+......+. ..+.++||||+
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~~---~~~~liDtPG~ 155 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKLD---NKIKLLDTPGI 155 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEec---CCEEEEECCCC
Confidence 4468999999999999999999998866678889999987765443 47999999995
No 333
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.77 E-value=2.7e-07 Score=83.66 Aligned_cols=134 Identities=16% Similarity=0.242 Sum_probs=83.3
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCceee-------eeCCCCceEEeEE-EEEeCCCe--eEEEEeCCCCchhh-----hhh
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQKLSI-------VTNKPQTTRHRIL-GICSGPEY--QMILYDTPGIIEKK-----IHM 180 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~~~~-------~~~~~~tt~~~~~-~~~~~~~~--~l~liDtpG~~~~~-----~~~ 180 (415)
..|.+||.+|.|||||+|.|....+.. ....|.||.-... ..+..+++ ++.++||||+.+.- ...
T Consensus 47 FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncWeP 126 (336)
T KOG1547|consen 47 FNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCWEP 126 (336)
T ss_pred eEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchhHH
Confidence 379999999999999999997654332 1234555543332 23344443 67899999985421 122
Q ss_pred HhHHHHHHHHhhhc--------------ccceEEEEecCC-CCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHH
Q 014942 181 LDSMMMKNVRSAGI--------------NADCIVVLVDAC-KAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA 245 (415)
Q Consensus 181 l~~~~~~~~~~~~~--------------~aD~ii~VvD~~-~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~ 245 (415)
+..+..++..+|++ .+++++|.+..+ +.+..++..++..+.. -..++-|+-|.|...-++..
T Consensus 127 I~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~---vvNvvPVIakaDtlTleEr~ 203 (336)
T KOG1547|consen 127 IEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTE---VVNVVPVIAKADTLTLEERS 203 (336)
T ss_pred HHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhh---hheeeeeEeecccccHHHHH
Confidence 33333333333332 478999999876 4456666655544432 46788899999988765555
Q ss_pred HHHHHHh
Q 014942 246 KKLEWYE 252 (415)
Q Consensus 246 ~~~~~~~ 252 (415)
...+.+.
T Consensus 204 ~FkqrI~ 210 (336)
T KOG1547|consen 204 AFKQRIR 210 (336)
T ss_pred HHHHHHH
Confidence 4444443
No 334
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.75 E-value=4.9e-08 Score=86.61 Aligned_cols=93 Identities=26% Similarity=0.349 Sum_probs=67.4
Q ss_pred HHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHHHHHHHhhcCCCccEEEcc
Q 014942 185 MMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVS 264 (415)
Q Consensus 185 ~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vS 264 (415)
.+++++..+.+||++++|+|++.+.......+...+ .++|+++|+||+|+..........+.+... ...++.+|
T Consensus 9 ~~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~--~~~vi~iS 82 (171)
T cd01856 9 ALRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKIL----GNKPRIIVLNKADLADPKKTKKWLKYFESK--GEKVLFVN 82 (171)
T ss_pred HHHHHHHHHhhCCEEEEEeeccCccCcCChhhHhHh----cCCCEEEEEehhhcCChHHHHHHHHHHHhc--CCeEEEEE
Confidence 345567778999999999999876644333343332 357999999999997654443333333332 24689999
Q ss_pred cCCCCCHHHHHHHHHhhCC
Q 014942 265 AKYGHGVEDIRDWILTKLP 283 (415)
Q Consensus 265 A~~g~gv~eL~~~L~~~l~ 283 (415)
|+++.|+++|.+.|.+.++
T Consensus 83 a~~~~gi~~L~~~l~~~l~ 101 (171)
T cd01856 83 AKSGKGVKKLLKAAKKLLK 101 (171)
T ss_pred CCCcccHHHHHHHHHHHHH
Confidence 9999999999999998764
No 335
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.75 E-value=1.2e-08 Score=92.17 Aligned_cols=57 Identities=42% Similarity=0.482 Sum_probs=46.0
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCce--------eeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCC
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKL--------SIVTNKPQTTRHRILGICSGPEYQMILYDTPGI 173 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~--------~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~ 173 (415)
+...++++|.+|||||||+|+|++... ..++..|+||++.....+.. .+.++||||+
T Consensus 126 ~~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~DtPG~ 190 (190)
T cd01855 126 KGGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTPGI 190 (190)
T ss_pred cCCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC---CCEEEeCcCC
Confidence 345899999999999999999997542 34678899999987665543 5799999995
No 336
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.75 E-value=1.8e-08 Score=97.04 Aligned_cols=59 Identities=36% Similarity=0.524 Sum_probs=49.4
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCch
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIE 175 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~ 175 (415)
+..+|+++|.||||||||+|+|.+.+...++..|++|+........ .++.++||||+..
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~~---~~~~l~DtPGi~~ 178 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKLG---KGLELLDTPGILW 178 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEEeC---CcEEEEECCCcCC
Confidence 3458999999999999999999999887789999999987543332 3689999999864
No 337
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.74 E-value=2.2e-08 Score=95.82 Aligned_cols=60 Identities=38% Similarity=0.519 Sum_probs=49.6
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEK 176 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~ 176 (415)
+..+|+++|.||||||||+|+|.+.+...++..|++|+......+. ..+.++||||+...
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~---~~~~l~DtPG~~~~ 176 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKLS---DGLELLDTPGILWP 176 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEEeC---CCEEEEECCCcccC
Confidence 3458999999999999999999999887789999999887644332 26899999998543
No 338
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.74 E-value=1.4e-08 Score=100.78 Aligned_cols=131 Identities=23% Similarity=0.188 Sum_probs=76.8
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCc-----eeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHH
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQK-----LSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~-----~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~ 190 (415)
..|.++|.+|||||||+|+|++.. ...++..|+||+......+. ..+.++||||+... +.+...+.....
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~---~~~~l~DtPG~~~~--~~~~~~l~~~~l 229 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLD---DGHSLYDTPGIINS--HQMAHYLDKKDL 229 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeC---CCCEEEECCCCCCh--hHhhhhcCHHHH
Confidence 489999999999999999999753 34578999999987654442 25689999998542 222222211111
Q ss_pred hh---hcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHHHHHHHhh
Q 014942 191 SA---GINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEK 253 (415)
Q Consensus 191 ~~---~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~ 253 (415)
.. -.....+.+.+|..+...-........+.. .+..+.+.++|.+..+....+...+.+..
T Consensus 230 ~~~~~~~~i~~~~~~l~~~q~~~~ggl~~~d~~~~--~~~~~~~~~~~~~~~h~t~~~~a~~~~~~ 293 (360)
T TIGR03597 230 KYITPKKEIKPKTYQLNPNQTLFLGGLARFDYLKG--EKTSFTFYVSNELNIHRTKLENADELYNK 293 (360)
T ss_pred hhcCCCCccCceEEEeCCCCEEEEceEEEEEEecC--CceEEEEEccCCceeEeechhhhHHHHHh
Confidence 11 134566777777654331111111111222 34556777788776655444444444443
No 339
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.74 E-value=1.3e-08 Score=97.87 Aligned_cols=93 Identities=24% Similarity=0.335 Sum_probs=68.7
Q ss_pred HHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHHHHHHHhhcCCCccEEEccc
Q 014942 186 MKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSA 265 (415)
Q Consensus 186 ~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA 265 (415)
.++....+..||++|+|+|++.+.......+...+ .++|+++|+||+|+.+........+.+... ..+++++||
T Consensus 15 ~~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~----~~kp~iiVlNK~DL~~~~~~~~~~~~~~~~--~~~vi~vSa 88 (287)
T PRK09563 15 RREIKENLKLVDVVIEVLDARIPLSSENPMIDKII----GNKPRLLILNKSDLADPEVTKKWIEYFEEQ--GIKALAINA 88 (287)
T ss_pred HHHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHh----CCCCEEEEEEchhcCCHHHHHHHHHHHHHc--CCeEEEEEC
Confidence 34456678999999999999877655444555444 368999999999997654444444444332 246899999
Q ss_pred CCCCCHHHHHHHHHhhCCC
Q 014942 266 KYGHGVEDIRDWILTKLPL 284 (415)
Q Consensus 266 ~~g~gv~eL~~~L~~~l~~ 284 (415)
+++.|+++|++.|.+.++.
T Consensus 89 ~~~~gi~~L~~~l~~~l~~ 107 (287)
T PRK09563 89 KKGQGVKKILKAAKKLLKE 107 (287)
T ss_pred CCcccHHHHHHHHHHHHHH
Confidence 9999999999999887754
No 340
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.73 E-value=4.9e-08 Score=85.13 Aligned_cols=83 Identities=23% Similarity=0.263 Sum_probs=61.2
Q ss_pred ceEEEEecCCCCCchHHHHHH-HHhcccCCCCCEEEEEeCCCCCChhHHHHHHHHHhhcCCCccEEEcccCCCCCHHHHH
Q 014942 197 DCIVVLVDACKAPERIDEILE-EGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIR 275 (415)
Q Consensus 197 D~ii~VvD~~~~~~~~~~~l~-~~l~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gv~eL~ 275 (415)
|++++|+|++.+......++. ..+.. .++|+++|+||+|+.....+......+.... ...++++||++|.|+++|+
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~--~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~~~-~~~ii~vSa~~~~gi~~L~ 77 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKE--KGKKLILVLNKADLVPKEVLRKWLAYLRHSY-PTIPFKISATNGQGIEKKE 77 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHhc--CCCCEEEEEechhcCCHHHHHHHHHHHHhhC-CceEEEEeccCCcChhhHH
Confidence 789999999877655444454 34444 6799999999999987655444443343332 3578999999999999999
Q ss_pred HHHHhhC
Q 014942 276 DWILTKL 282 (415)
Q Consensus 276 ~~L~~~l 282 (415)
+.|.+..
T Consensus 78 ~~i~~~~ 84 (155)
T cd01849 78 SAFTKQT 84 (155)
T ss_pred HHHHHHh
Confidence 9997654
No 341
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.73 E-value=4.1e-08 Score=93.92 Aligned_cols=181 Identities=19% Similarity=0.183 Sum_probs=110.4
Q ss_pred ccEEEEEecCCCCHHHHHHHHhCCceee-------------eeCCCCceEEeEEEE---------E------------eC
Q 014942 115 SGYVAVLGKPNVGKSTLANQMIGQKLSI-------------VTNKPQTTRHRILGI---------C------------SG 160 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~~~~~~~-------------~~~~~~tt~~~~~~~---------~------------~~ 160 (415)
..+|+++|...+|||||+--|....... -.-..+.|......+ + ..
T Consensus 167 evRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~ 246 (591)
T KOG1143|consen 167 EVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEK 246 (591)
T ss_pred EEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHhh
Confidence 3489999999999999998887543211 001111111110000 1 11
Q ss_pred CCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhh--cccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCC
Q 014942 161 PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG--INADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDL 238 (415)
Q Consensus 161 ~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~--~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl 238 (415)
...-+.|+|.+|.. .+ .+.+...+ ...|.+++|+.+..+.....+..+.+... .+.|++++++|+|+
T Consensus 247 SSKlvTfiDLAGh~--kY-------~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEHLgl~~A--L~iPfFvlvtK~Dl 315 (591)
T KOG1143|consen 247 SSKLVTFIDLAGHA--KY-------QKTTIHGLTGYTPHFACLVVSADRGITWTTREHLGLIAA--LNIPFFVLVTKMDL 315 (591)
T ss_pred hcceEEEeecccch--hh-------heeeeeecccCCCceEEEEEEcCCCCccccHHHHHHHHH--hCCCeEEEEEeecc
Confidence 12357899999952 22 22222212 24688899999988887666666666666 78999999999999
Q ss_pred CChhHHHHHHHHHh----------------------------hcCCCccEEEcccCCCCCHHHHHHHHHhhCCCCCCCCC
Q 014942 239 IKPGEIAKKLEWYE----------------------------KFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYP 290 (415)
Q Consensus 239 ~~~~~~~~~~~~~~----------------------------~~~~~~~i~~vSA~~g~gv~eL~~~L~~~l~~~~~~~~ 290 (415)
..+..+......+. ...+..|+|.+|+.+|+|++-|...|. .+++......
T Consensus 316 ~~~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~fLn-~Lsp~~~~~e 394 (591)
T KOG1143|consen 316 VDRQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTFLN-CLSPAGTAEE 394 (591)
T ss_pred ccchhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHHHh-hcCCcCChHH
Confidence 87644433322222 123456999999999999987666554 4443322222
Q ss_pred CCCccccCCchhHHHHHHH
Q 014942 291 KFQDIVSEHPERFFVGEII 309 (415)
Q Consensus 291 ~~~~~~t~~~~~~~i~eii 309 (415)
. +++...|..|.+.||.
T Consensus 395 ~--~~L~q~~~eFqvdEiy 411 (591)
T KOG1143|consen 395 R--IQLVQLPAEFQVDEIY 411 (591)
T ss_pred H--HHHhcCcceeeHhHee
Confidence 2 4556667777677654
No 342
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=98.73 E-value=1.7e-07 Score=88.98 Aligned_cols=159 Identities=21% Similarity=0.211 Sum_probs=105.0
Q ss_pred ccEEEEEecCCCCHHHHHHHHhCC-------ce---ee-----eeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhh
Q 014942 115 SGYVAVLGKPNVGKSTLANQMIGQ-------KL---SI-----VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIH 179 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~~~-------~~---~~-----~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~ 179 (415)
..+|+-+|+...|||||..++..- ++ .. -....|.|.+.....+......+--+|+||+.+
T Consensus 54 HvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHAD---- 129 (449)
T KOG0460|consen 54 HVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHAD---- 129 (449)
T ss_pred cccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHH----
Confidence 347999999999999999988521 11 11 122335565555555666677888999999532
Q ss_pred hHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCC-CEEEEEeCCCCCChhHHHHH-----HHHHhh
Q 014942 180 MLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKL-PILLVLNKKDLIKPGEIAKK-----LEWYEK 253 (415)
Q Consensus 180 ~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~-piilV~NK~Dl~~~~~~~~~-----~~~~~~ 253 (415)
+.++......+-|++|+|+.++++..++....+-+.++ -+. .+++.+||.|++++.+..+. .+.+..
T Consensus 130 -----YIKNMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQ--VGV~~ivvfiNKvD~V~d~e~leLVEmE~RElLse 202 (449)
T KOG0460|consen 130 -----YIKNMITGAAQMDGAILVVAATDGPMPQTREHLLLARQ--VGVKHIVVFINKVDLVDDPEMLELVEMEIRELLSE 202 (449)
T ss_pred -----HHHHhhcCccccCceEEEEEcCCCCCcchHHHHHHHHH--cCCceEEEEEecccccCCHHHHHHHHHHHHHHHHH
Confidence 45555555678899999999999997777665555555 344 47888999999954433221 222222
Q ss_pred ---cCCCccEEEcccC---CCC----C---HHHHHHHHHhhCCC
Q 014942 254 ---FTDVDEVIPVSAK---YGH----G---VEDIRDWILTKLPL 284 (415)
Q Consensus 254 ---~~~~~~i~~vSA~---~g~----g---v~eL~~~L~~~l~~ 284 (415)
.....|++.-||+ .|. | |..|++.+-+++|.
T Consensus 203 ~gf~Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip~ 246 (449)
T KOG0460|consen 203 FGFDGDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIPT 246 (449)
T ss_pred cCCCCCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccCCC
Confidence 2344688887775 332 2 56677777777765
No 343
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.73 E-value=4.6e-08 Score=90.65 Aligned_cols=91 Identities=20% Similarity=0.142 Sum_probs=63.6
Q ss_pred ccEEEEEecCCCCHHHHHHHHhCC--ceeeeeCCCCceEEeEEEEEeC---CCeeEEEEeCCCCchhhhhhHhHHHHHHH
Q 014942 115 SGYVAVLGKPNVGKSTLANQMIGQ--KLSIVTNKPQTTRHRILGICSG---PEYQMILYDTPGIIEKKIHMLDSMMMKNV 189 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~~~--~~~~~~~~~~tt~~~~~~~~~~---~~~~l~liDtpG~~~~~~~~l~~~~~~~~ 189 (415)
-..|+|+|++++|||+|+|+|++. .+........+|+......... .+..++++||||+.+..... ......
T Consensus 7 v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~---~~~~~~ 83 (224)
T cd01851 7 VAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGE---FEDDAR 83 (224)
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCc---hhhhhH
Confidence 347999999999999999999999 7876667777887655444443 35789999999985432221 011122
Q ss_pred Hhhhc--ccceEEEEecCCCC
Q 014942 190 RSAGI--NADCIVVLVDACKA 208 (415)
Q Consensus 190 ~~~~~--~aD~ii~VvD~~~~ 208 (415)
..++. -+|++||.++....
T Consensus 84 ~~~l~~llss~~i~n~~~~~~ 104 (224)
T cd01851 84 LFALATLLSSVLIYNSWETIL 104 (224)
T ss_pred HHHHHHHHhCEEEEeccCccc
Confidence 22233 48999999887543
No 344
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.71 E-value=4e-08 Score=87.16 Aligned_cols=57 Identities=44% Similarity=0.542 Sum_probs=47.9
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCC
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGI 173 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~ 173 (415)
...+++++|.+|+|||||+|+|.+..+..++..+++|+......+. ..+.+|||||+
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 3458999999999999999999998877778889999886654443 47899999996
No 345
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.70 E-value=3e-07 Score=89.26 Aligned_cols=134 Identities=16% Similarity=0.190 Sum_probs=84.1
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCceeee------eCCCCce--EEeEEEEEeCCC--eeEEEEeCCCCchh-----hhhh
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQKLSIV------TNKPQTT--RHRILGICSGPE--YQMILYDTPGIIEK-----KIHM 180 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~~~~~------~~~~~tt--~~~~~~~~~~~~--~~l~liDtpG~~~~-----~~~~ 180 (415)
..+.++|.+|.|||||+|.|++..+... ...+..| .......+..++ .+++++||||+.+. .+..
T Consensus 22 ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w~p 101 (366)
T KOG2655|consen 22 FTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCWRP 101 (366)
T ss_pred eEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccchh
Confidence 4799999999999999999988754321 1112112 111222233333 46789999998542 1222
Q ss_pred HhHHHHHHHHhhh-----------c--ccceEEEEecCC-CCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHH
Q 014942 181 LDSMMMKNVRSAG-----------I--NADCIVVLVDAC-KAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK 246 (415)
Q Consensus 181 l~~~~~~~~~~~~-----------~--~aD~ii~VvD~~-~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~ 246 (415)
+......+...|+ . .+++++|.+..+ +++.+.+..+...+. ...++|-|+-|.|...+.++..
T Consensus 102 i~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~---~~vNiIPVI~KaD~lT~~El~~ 178 (366)
T KOG2655|consen 102 IVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLS---KKVNLIPVIAKADTLTKDELNQ 178 (366)
T ss_pred hhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHh---ccccccceeeccccCCHHHHHH
Confidence 2222222222222 2 689999999876 457777766655443 5788999999999998877765
Q ss_pred HHHHHh
Q 014942 247 KLEWYE 252 (415)
Q Consensus 247 ~~~~~~ 252 (415)
....+.
T Consensus 179 ~K~~I~ 184 (366)
T KOG2655|consen 179 FKKRIR 184 (366)
T ss_pred HHHHHH
Confidence 554443
No 346
>PF07650 KH_2: KH domain syndrome, contains KH motifs.; InterPro: IPR004044 The K homology (KH) domain was first identified in the human heterogeneous nuclear ribonucleoprotein (hnRNP) K. It is a domain of around 70 amino acids that is present in a wide variety of quite diverse nucleic acid-binding proteins []. It has been shown to bind RNA [, ]. Like many other RNA-binding motifs, KH motifs are found in one or multiple copies (14 copies in chicken vigilin) and, at least for hnRNP K (three copies) and FMR-1 (two copies), each motif is necessary for in vitro RNA binding activity, suggesting that they may function cooperatively or, in the case of single KH motif proteins (for example, Mer1p), independently []. According to structural [, , ] analysis the KH domain can be separated in two groups. The first group or type-1 contain a beta-alpha-alpha-beta-beta-alpha structure, whereas in the type-2 the two last beta-sheet are located in the N-terminal part of the domain (alpha-beta-beta-alpha-alpha-beta). Sequence similarity between these two folds are limited to a short region (VIGXXGXXI) in the RNA binding motif. This motif is located between helice 1 and 2 in type-1 and between helice 2 and 3 in type-2. Proteins known to contain a type-2 KH domain include eukaryotic and prokaryotic S3 family of ribosomal proteins, and the prokaryotic GTP-binding protein, era.; GO: 0003723 RNA binding; PDB: 2XR1_B 3OAR_C 3OFX_C 1VS7_C 3I1O_C 2WWL_C 3R8O_C 2QAL_C 3J00_C 3J0V_F ....
Probab=98.69 E-value=1.7e-08 Score=77.46 Aligned_cols=53 Identities=43% Similarity=0.660 Sum_probs=50.1
Q ss_pred EEEEEeeCCceeEEeecCChHHHHHHHHHHHHHHHHhCCcEEEEEEEEeCCCcc
Q 014942 344 VEIVVEKNSQKIILIGKGGKALKLLATAARLDIEDFLQKKVYLEIEVKVKENWR 397 (415)
Q Consensus 344 ~~~~~~r~~q~~iiiG~~g~~i~~i~~~ar~~l~~~~~~~v~l~l~vk~~~~w~ 397 (415)
+.+++.+.+|+.++||++|++|++|+..++++|+.+++++|+|+++ +|++.|+
T Consensus 26 ~~~i~i~~~~~~ivIGk~G~~ik~i~~~~~k~l~~~~~~~V~l~v~-~V~~~~~ 78 (78)
T PF07650_consen 26 QIIIVIKASQPGIVIGKKGSNIKKIREELRKELEKLLNKKVFLNVV-KVKKPWR 78 (78)
T ss_dssp EEEEEEEESSHHHHHTGGGHHHHHHHHHHHHHHHHHCSSSEEEEEE-EESSCGG
T ss_pred eEEEEEeCCCccHhHHhhhHHHHHHHHHHHHHHhhcCCCcEEEEEE-EecCCCC
Confidence 3466889999999999999999999999999999999999999999 9999997
No 347
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.68 E-value=6.8e-08 Score=90.24 Aligned_cols=117 Identities=21% Similarity=0.335 Sum_probs=78.6
Q ss_pred eEEEEeCCCCchhhhhhHhHHHHHHHHhhhcccceEEEEecCCCCC-chHHHHHHHHhcccCCCCCEEEEEeCCCCCChh
Q 014942 164 QMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP-ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG 242 (415)
Q Consensus 164 ~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~-~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~ 242 (415)
.+.|+|+||+ + .++..+.....-.|++++++.++.+. +++....+...... .-+.++++-||+|+....
T Consensus 126 HVSfVDCPGH--D-------iLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM-~LkhiiilQNKiDli~e~ 195 (466)
T KOG0466|consen 126 HVSFVDCPGH--D-------ILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIM-KLKHIIILQNKIDLIKES 195 (466)
T ss_pred EEEeccCCch--H-------HHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHh-hhceEEEEechhhhhhHH
Confidence 5779999994 1 23344444445568888888887654 33332222222110 335689999999999876
Q ss_pred HHHHHHHHHhhc-----CCCccEEEcccCCCCCHHHHHHHHHhhCCCCCCCCC
Q 014942 243 EIAKKLEWYEKF-----TDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYP 290 (415)
Q Consensus 243 ~~~~~~~~~~~~-----~~~~~i~~vSA~~g~gv~eL~~~L~~~l~~~~~~~~ 290 (415)
...+..+.+... ....|++|+||.-+.|++.+.++|++.+|..+..|.
T Consensus 196 ~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvPvRdf~ 248 (466)
T KOG0466|consen 196 QALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVPVRDFT 248 (466)
T ss_pred HHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCCccccC
Confidence 555444444432 234599999999999999999999999998666553
No 348
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.65 E-value=4.9e-08 Score=95.82 Aligned_cols=89 Identities=21% Similarity=0.166 Sum_probs=67.6
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCC-----------------eeEEEEeCCCCchhhh
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE-----------------YQMILYDTPGIIEKKI 178 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~-----------------~~l~liDtpG~~~~~~ 178 (415)
.+++|+|.||+|||||+|+|++.....+..+|.+|..+..+.+...+ ..+.++|.||+.....
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 47999999999999999999998863567889998888777765443 3689999999965332
Q ss_pred hhHhHHHHHHHHhhhcccceEEEEecCC
Q 014942 179 HMLDSMMMKNVRSAGINADCIVVLVDAC 206 (415)
Q Consensus 179 ~~l~~~~~~~~~~~~~~aD~ii~VvD~~ 206 (415)
.. .-+.......++.+|++++|+|+.
T Consensus 83 ~g--~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KG--EGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cc--cCcchHHHHHHHhCCEEEEEEeCC
Confidence 21 112223445578999999999985
No 349
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.64 E-value=1.1e-07 Score=81.53 Aligned_cols=81 Identities=23% Similarity=0.163 Sum_probs=59.4
Q ss_pred HHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHHHHHHHhhcCCCccEEEcccCC
Q 014942 188 NVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKY 267 (415)
Q Consensus 188 ~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~ 267 (415)
.+...+..+|++++|+|++.+.......+.+.+.....++|+++|+||+|+..+..+....+.+.... .+++++||++
T Consensus 4 ~~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~~~~~~~~~~~~~~~~~--~~ii~iSa~~ 81 (141)
T cd01857 4 QLWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLLTEEQRKAWAEYFKKEG--IVVVFFSALK 81 (141)
T ss_pred HHHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcCCHHHHHHHHHHHHhcC--CeEEEEEecC
Confidence 45666899999999999988775555455555544224789999999999987665555555554432 4789999999
Q ss_pred CCC
Q 014942 268 GHG 270 (415)
Q Consensus 268 g~g 270 (415)
|.+
T Consensus 82 ~~~ 84 (141)
T cd01857 82 ENA 84 (141)
T ss_pred CCc
Confidence 876
No 350
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.54 E-value=3.2e-07 Score=86.16 Aligned_cols=85 Identities=22% Similarity=0.368 Sum_probs=61.9
Q ss_pred hhhcccceEEEEecCCCCC---chHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHH-HHHHHHhhcCCCccEEEcccC
Q 014942 191 SAGINADCIVVLVDACKAP---ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAK 266 (415)
Q Consensus 191 ~~~~~aD~ii~VvD~~~~~---~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~i~~vSA~ 266 (415)
.+++++|.+++|+|++++. ...+.|+. .+.. .++|+++|+||+||....... +....+.. .+ .+++++||+
T Consensus 32 ~~~~n~D~viiV~d~~~p~~s~~~l~r~l~-~~~~--~~i~~vIV~NK~DL~~~~~~~~~~~~~~~~-~g-~~v~~~SAk 106 (245)
T TIGR00157 32 PIVANIDQIVIVSSAVLPELSLNQLDRFLV-VAEA--QNIEPIIVLNKIDLLDDEDMEKEQLDIYRN-IG-YQVLMTSSK 106 (245)
T ss_pred cccccCCEEEEEEECCCCCCCHHHHHHHHH-HHHH--CCCCEEEEEECcccCCCHHHHHHHHHHHHH-CC-CeEEEEecC
Confidence 3578999999999998654 33444443 3333 679999999999997544433 33444443 23 479999999
Q ss_pred CCCCHHHHHHHHHh
Q 014942 267 YGHGVEDIRDWILT 280 (415)
Q Consensus 267 ~g~gv~eL~~~L~~ 280 (415)
+|.|+++|++.|..
T Consensus 107 tg~gi~eLf~~l~~ 120 (245)
T TIGR00157 107 NQDGLKELIEALQN 120 (245)
T ss_pred CchhHHHHHhhhcC
Confidence 99999999998865
No 351
>PRK12289 GTPase RsgA; Reviewed
Probab=98.52 E-value=1.2e-07 Score=93.37 Aligned_cols=56 Identities=36% Similarity=0.352 Sum_probs=42.6
Q ss_pred EEEEEecCCCCHHHHHHHHhCCceeeeeCCCC-------ceEEeEEEEEeCCCeeEEEEeCCCCch
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQ-------TTRHRILGICSGPEYQMILYDTPGIIE 175 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~-------tt~~~~~~~~~~~~~~l~liDtpG~~~ 175 (415)
.++|+|.||||||||+|+|++.....+...++ ||++.....+..+ ..++||||+..
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g---~~liDTPG~~~ 236 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNG---GLLADTPGFNQ 236 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCC---cEEEeCCCccc
Confidence 58999999999999999999887665666666 7777644433322 27999999854
No 352
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.51 E-value=2.3e-07 Score=80.86 Aligned_cols=57 Identities=37% Similarity=0.561 Sum_probs=44.4
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCC
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGI 173 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~ 173 (415)
...+++++|.+|+|||||+|+|.+.....++..+++|+..... .. +..+.+|||||+
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~~--~~-~~~~~~~DtpGi 156 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLV--KI-TSKIYLLDTPGV 156 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEEE--Ec-CCCEEEEECcCC
Confidence 3458999999999999999999987766677788887664322 22 237999999995
No 353
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=7.7e-07 Score=91.44 Aligned_cols=144 Identities=26% Similarity=0.308 Sum_probs=82.2
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEe----------------------------------------
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHR---------------------------------------- 153 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~---------------------------------------- 153 (415)
+..+|+|.|..++||||++|+++..++-.. ....+|.-.
T Consensus 108 ~~mKV~ifGrts~GKSt~iNAmL~~klLP~-g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~ 186 (749)
T KOG0448|consen 108 RHMKVAIFGRTSAGKSTVINAMLHKKLLPS-GIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDL 186 (749)
T ss_pred cccEEEEeCCCCCcHHHHHHHHHHHhhCcc-cccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccccc
Confidence 455999999999999999999987654321 111111000
Q ss_pred ----EEEEEeCCC------eeEEEEeCCCCchhhhhhHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhccc
Q 014942 154 ----ILGICSGPE------YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDH 223 (415)
Q Consensus 154 ----~~~~~~~~~------~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~ 223 (415)
...++-.++ ..+.++|.||+.-. ......+-+...++|++|||+.+.+........+......
T Consensus 187 ~~~sLlrV~~p~~~csLLrnDivliDsPGld~~------se~tswid~~cldaDVfVlV~NaEntlt~sek~Ff~~vs~- 259 (749)
T KOG0448|consen 187 GAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVD------SELTSWIDSFCLDADVFVLVVNAENTLTLSEKQFFHKVSE- 259 (749)
T ss_pred CcceEEEEEecCccchhhhccceeccCCCCCCc------hhhhHHHHHHhhcCCeEEEEecCccHhHHHHHHHHHHhhc-
Confidence 001111111 26889999997321 1122223444679999999999877665444444433333
Q ss_pred CCCCCEEEEEeCCCCCCh--hHHHHHHHHHhhc------CCCccEEEcccC
Q 014942 224 KDKLPILLVLNKKDLIKP--GEIAKKLEWYEKF------TDVDEVIPVSAK 266 (415)
Q Consensus 224 ~~~~piilV~NK~Dl~~~--~~~~~~~~~~~~~------~~~~~i~~vSA~ 266 (415)
.+..++++.||+|.... +-.+....++... .-...++.+||+
T Consensus 260 -~KpniFIlnnkwDasase~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~ 309 (749)
T KOG0448|consen 260 -EKPNIFILNNKWDASASEPECKEDVLKQIHELSVVTEKEAADRVFFVSAK 309 (749)
T ss_pred -cCCcEEEEechhhhhcccHHHHHHHHHHHHhcCcccHhhhcCeeEEEecc
Confidence 34557788899998643 2222222222211 112368999975
No 354
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.51 E-value=2.3e-06 Score=85.85 Aligned_cols=120 Identities=18% Similarity=0.238 Sum_probs=70.3
Q ss_pred ccEEEEEecCCCCHHHHHHHHh------CCceeeeeCCCCc-----------eEE--eEEEEEe----------------
Q 014942 115 SGYVAVLGKPNVGKSTLANQMI------GQKLSIVTNKPQT-----------TRH--RILGICS---------------- 159 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~------~~~~~~~~~~~~t-----------t~~--~~~~~~~---------------- 159 (415)
+..|+++|.+||||||++..|. |.++..++..+.. .+. +......
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~ 179 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFK 179 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHH
Confidence 4589999999999999999985 5555555433211 111 1111111
Q ss_pred CCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCC
Q 014942 160 GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI 239 (415)
Q Consensus 160 ~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~ 239 (415)
..++.++|+||||..+.... +-..+... .. ...+|.+++|+|++.+..... ..+.... .-.+.-+|+||.|..
T Consensus 180 ~~~~DvViIDTaGr~~~d~~-lm~El~~i-~~-~~~p~e~lLVlda~~Gq~a~~--~a~~F~~--~~~~~g~IlTKlD~~ 252 (429)
T TIGR01425 180 KENFDIIIVDTSGRHKQEDS-LFEEMLQV-AE-AIQPDNIIFVMDGSIGQAAEA--QAKAFKD--SVDVGSVIITKLDGH 252 (429)
T ss_pred hCCCCEEEEECCCCCcchHH-HHHHHHHH-hh-hcCCcEEEEEeccccChhHHH--HHHHHHh--ccCCcEEEEECccCC
Confidence 12568999999997543222 22222221 11 346789999999986643321 2222222 224677899999986
Q ss_pred Ch
Q 014942 240 KP 241 (415)
Q Consensus 240 ~~ 241 (415)
..
T Consensus 253 ar 254 (429)
T TIGR01425 253 AK 254 (429)
T ss_pred CC
Confidence 43
No 355
>PRK13796 GTPase YqeH; Provisional
Probab=98.50 E-value=1.9e-07 Score=92.85 Aligned_cols=57 Identities=42% Similarity=0.507 Sum_probs=45.0
Q ss_pred ccEEEEEecCCCCHHHHHHHHhCCc-----eeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCc
Q 014942 115 SGYVAVLGKPNVGKSTLANQMIGQK-----LSIVTNKPQTTRHRILGICSGPEYQMILYDTPGII 174 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~~~~-----~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~ 174 (415)
...+.++|.+|||||||+|+|++.. ...++..||||++.+...+.. ...++||||+.
T Consensus 160 ~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~---~~~l~DTPGi~ 221 (365)
T PRK13796 160 GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDD---GSFLYDTPGII 221 (365)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCC---CcEEEECCCcc
Confidence 3479999999999999999998542 334789999999877654433 35899999985
No 356
>PRK12288 GTPase RsgA; Reviewed
Probab=98.49 E-value=2.7e-07 Score=90.78 Aligned_cols=56 Identities=29% Similarity=0.333 Sum_probs=40.9
Q ss_pred EEEEEecCCCCHHHHHHHHhCCceeeeeCCCC-------ceEEeEEEEEeCCCeeEEEEeCCCCch
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQ-------TTRHRILGICSGPEYQMILYDTPGIIE 175 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~-------tt~~~~~~~~~~~~~~l~liDtpG~~~ 175 (415)
.++|+|.||||||||+|+|++.....+...++ ||+......+..+ ..++||||+..
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~---~~liDTPGir~ 269 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHG---GDLIDSPGVRE 269 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCC---CEEEECCCCCc
Confidence 58999999999999999999887655544443 5666554444332 35999999854
No 357
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.48 E-value=5.4e-07 Score=78.88 Aligned_cols=117 Identities=20% Similarity=0.311 Sum_probs=67.1
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCc----eeeeeCCCCce----------EEeEEEE----------------E-------
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQK----LSIVTNKPQTT----------RHRILGI----------------C------- 158 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~----~~~~~~~~~tt----------~~~~~~~----------------~------- 158 (415)
|.++++|..|+|||||+++++... ........+.. ...+... +
T Consensus 1 p~~~l~G~~GsGKTtl~~~l~~~~~~~~~~~i~~~~G~~~~d~~~~~~~~~~v~~l~~GCiCC~~~~~l~~~l~~l~~~~ 80 (158)
T cd03112 1 PVTVLTGFLGAGKTTLLNHILTEQHGRKIAVIENEFGEVGIDNQLVVDTDEEIIEMNNGCICCTVRGDLIRALLDLLERL 80 (158)
T ss_pred CEEEEEECCCCCHHHHHHHHHhcccCCcEEEEecCCCccchhHHHHhCCCceEEEeCCCEeEeeCchhHHHHHHHHHHHH
Confidence 368899999999999999987652 11111111100 0001110 0
Q ss_pred --eCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhcccceEEEEecCCCCCchH--HHHHHHHhcccCCCCCEEEEEe
Q 014942 159 --SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERI--DEILEEGVGDHKDKLPILLVLN 234 (415)
Q Consensus 159 --~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~--~~~l~~~l~~~~~~~piilV~N 234 (415)
.....+..++||||+.+ +...+...+..........+|.+++++|+.+..... ...+...+.. -=++|+|
T Consensus 81 ~~~~~~~d~I~IEt~G~~~-p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~-----ad~ivln 154 (158)
T cd03112 81 DAGKIAFDRIVIETTGLAD-PGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAF-----ADRILLN 154 (158)
T ss_pred HhccCCCCEEEEECCCcCC-HHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHH-----CCEEEEe
Confidence 01345789999999853 444443333344445567899999999986533221 1223333332 2267999
Q ss_pred CCCC
Q 014942 235 KKDL 238 (415)
Q Consensus 235 K~Dl 238 (415)
|+|+
T Consensus 155 k~dl 158 (158)
T cd03112 155 KTDL 158 (158)
T ss_pred cccC
Confidence 9996
No 358
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.47 E-value=2.4e-07 Score=88.06 Aligned_cols=89 Identities=26% Similarity=0.299 Sum_probs=67.7
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCC-----------------eeEEEEeCCCCchh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE-----------------YQMILYDTPGIIEK 176 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~-----------------~~l~liDtpG~~~~ 176 (415)
.+.+++|||.||||||||+|+|+..... ...+|.+|.++....+...+ ..+.++|++|+...
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~-~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkG 97 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKAG-AANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKG 97 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCCC-ccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccC
Confidence 4569999999999999999999998877 78999999888766543221 36899999998653
Q ss_pred h--hhhHhHHHHHHHHhhhcccceEEEEecCCC
Q 014942 177 K--IHMLDSMMMKNVRSAGINADCIVVLVDACK 207 (415)
Q Consensus 177 ~--~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~ 207 (415)
. ...+...+ .+-++.+|+++.|+++..
T Consensus 98 As~G~GLGN~F----Ls~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 98 ASAGEGLGNKF----LSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred cccCcCchHHH----HHhhhhccceeEEEEecC
Confidence 3 22343333 445789999999998753
No 359
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.45 E-value=4.2e-07 Score=82.02 Aligned_cols=123 Identities=15% Similarity=0.203 Sum_probs=81.5
Q ss_pred ccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeC-CCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhh
Q 014942 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG-PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~-~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~ 193 (415)
..+|.++|.+|+||||+=..+.....+.-...+|.|.+.....+.. ++.-+.+||+.| ++.+ +...+..+-...+
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGg--qe~f--men~~~~q~d~iF 79 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGG--QEEF--MENYLSSQEDNIF 79 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCC--cHHH--HHHHHhhcchhhh
Confidence 3489999999999999877776555444455677777766665544 346789999999 4321 2333333334457
Q ss_pred cccceEEEEecCCCCCchHH----HHHHHHhcccCCCCCEEEEEeCCCCCCh
Q 014942 194 INADCIVVLVDACKAPERID----EILEEGVGDHKDKLPILLVLNKKDLIKP 241 (415)
Q Consensus 194 ~~aD~ii~VvD~~~~~~~~~----~~l~~~l~~~~~~~piilV~NK~Dl~~~ 241 (415)
++.+++++|+|++...-..+ +..++.+....+...+++.+.|+|+...
T Consensus 80 ~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~ 131 (295)
T KOG3886|consen 80 RNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQE 131 (295)
T ss_pred eeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhccc
Confidence 89999999999976531111 1122233333366778999999999854
No 360
>PRK12289 GTPase RsgA; Reviewed
Probab=98.45 E-value=7e-07 Score=87.95 Aligned_cols=85 Identities=24% Similarity=0.365 Sum_probs=61.6
Q ss_pred hhhcccceEEEEecCCCCC-ch--HHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHHHHHHHhhcCCCccEEEcccCC
Q 014942 191 SAGINADCIVVLVDACKAP-ER--IDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKY 267 (415)
Q Consensus 191 ~~~~~aD~ii~VvD~~~~~-~~--~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~ 267 (415)
.++.++|.+++|+|+.++. .. ++.++.. ... .++|+++|+||+||............+.. .++ +++++||++
T Consensus 85 ~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~-a~~--~~ip~ILVlNK~DLv~~~~~~~~~~~~~~-~g~-~v~~iSA~t 159 (352)
T PRK12289 85 PPVANADQILLVFALAEPPLDPWQLSRFLVK-AES--TGLEIVLCLNKADLVSPTEQQQWQDRLQQ-WGY-QPLFISVET 159 (352)
T ss_pred hhhhcCCEEEEEEECCCCCCCHHHHHHHHHH-HHH--CCCCEEEEEEchhcCChHHHHHHHHHHHh-cCC-eEEEEEcCC
Confidence 3478999999999997654 22 2344332 233 67999999999999876555444444443 233 789999999
Q ss_pred CCCHHHHHHHHHh
Q 014942 268 GHGVEDIRDWILT 280 (415)
Q Consensus 268 g~gv~eL~~~L~~ 280 (415)
|.|+++|++.|..
T Consensus 160 g~GI~eL~~~L~~ 172 (352)
T PRK12289 160 GIGLEALLEQLRN 172 (352)
T ss_pred CCCHHHHhhhhcc
Confidence 9999999998864
No 361
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.45 E-value=2.2e-06 Score=86.12 Aligned_cols=135 Identities=19% Similarity=0.257 Sum_probs=88.7
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceee-eeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI-VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~-~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~ 192 (415)
.+..|+|+|+||+|||||+..|+..-... .+...| + ..++.....+++|+.+|. + . ......
T Consensus 68 PPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~G----P-iTvvsgK~RRiTflEcp~--D--l--------~~miDv 130 (1077)
T COG5192 68 PPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRG----P-ITVVSGKTRRITFLECPS--D--L--------HQMIDV 130 (1077)
T ss_pred CCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCC----c-eEEeecceeEEEEEeChH--H--H--------HHHHhH
Confidence 34477899999999999999987543211 111111 1 123456667899999995 2 1 112233
Q ss_pred hcccceEEEEecCCCCCchHHHHHHHHhcccCCCCC-EEEEEeCCCCCCh-hHHHHHHH-----HHhhcCCCccEEEccc
Q 014942 193 GINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKDLIKP-GEIAKKLE-----WYEKFTDVDEVIPVSA 265 (415)
Q Consensus 193 ~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~p-iilV~NK~Dl~~~-~~~~~~~~-----~~~~~~~~~~i~~vSA 265 (415)
..-||++++++|+.-+++...-.++.++.. .+.| ++-|++..|+... ..+..... .+........+|.+|.
T Consensus 131 aKIaDLVlLlIdgnfGfEMETmEFLnil~~--HGmPrvlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiyqGaKlFylsg 208 (1077)
T COG5192 131 AKIADLVLLLIDGNFGFEMETMEFLNILIS--HGMPRVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIYQGAKLFYLSG 208 (1077)
T ss_pred HHhhheeEEEeccccCceehHHHHHHHHhh--cCCCceEEEEeecccccChHHHHHHHHHHhhhHHHHHcCCceEEEecc
Confidence 567999999999998888777778887776 6777 5569999999753 33333222 2333444557788876
Q ss_pred CC
Q 014942 266 KY 267 (415)
Q Consensus 266 ~~ 267 (415)
..
T Consensus 209 V~ 210 (1077)
T COG5192 209 VE 210 (1077)
T ss_pred cc
Confidence 54
No 362
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.42 E-value=3.6e-07 Score=81.07 Aligned_cols=56 Identities=27% Similarity=0.325 Sum_probs=42.4
Q ss_pred ceEEEEecCCCCCchHHHHHHHH--hcccCCCCCEEEEEeCCCCCChhHHHHHHHHHhhc
Q 014942 197 DCIVVLVDACKAPERIDEILEEG--VGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKF 254 (415)
Q Consensus 197 D~ii~VvD~~~~~~~~~~~l~~~--l~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~ 254 (415)
|++++|+|+..+.......+.+. +.. .++|+|+|+||+|+.++..+..+.+.+...
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~l~~--~~kp~IlVlNK~DL~~~~~l~~~~~~~~~~ 58 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQAG--GNKKLVLVLNKIDLVPKENVEKWLKYLRRE 58 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHhcc--CCCCEEEEEehhhcCCHHHHHHHHHHHHhh
Confidence 78999999998775555555555 333 568999999999999877777666666554
No 363
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.41 E-value=3.5e-07 Score=85.91 Aligned_cols=56 Identities=30% Similarity=0.293 Sum_probs=40.4
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCceeee---eC----CCCceEEeEEEEEeCCCeeEEEEeCCCCch
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQKLSIV---TN----KPQTTRHRILGICSGPEYQMILYDTPGIIE 175 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~~~~~---~~----~~~tt~~~~~~~~~~~~~~l~liDtpG~~~ 175 (415)
..++++|.+|||||||+|+|++.....+ +. ...||++.....+ . .-.++||||+..
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l-~---~~~liDtPG~~~ 183 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF-H---GGLIADTPGFNE 183 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc-C---CcEEEeCCCccc
Confidence 4799999999999999999998754332 22 2337776655444 2 237999999855
No 364
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=98.38 E-value=1.6e-06 Score=83.24 Aligned_cols=163 Identities=20% Similarity=0.276 Sum_probs=98.0
Q ss_pred CCCCCccEEEEEecCCCCHHHHHHHHhCCceee----------------ee--------------------CCCCceE--
Q 014942 110 HPNHKSGYVAVLGKPNVGKSTLANQMIGQKLSI----------------VT--------------------NKPQTTR-- 151 (415)
Q Consensus 110 ~~~~~~~~V~ivG~~~vGKSSLln~l~~~~~~~----------------~~--------------------~~~~tt~-- 151 (415)
..++-..+|+++|...+|||||+--|....... .+ .+|..-.
T Consensus 128 ~~DF~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~ 207 (641)
T KOG0463|consen 128 EKDFIEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHN 207 (641)
T ss_pred CccceeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCc
Confidence 344556699999999999999998776432210 00 0010000
Q ss_pred EeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHH--hhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCE
Q 014942 152 HRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVR--SAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPI 229 (415)
Q Consensus 152 ~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~--~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~pi 229 (415)
-....++.....-+.|||.+|+ +.+ .+.+. ..-...|...+++-+.-+.--.....+.+.-. ...|+
T Consensus 208 LdWvkIce~saKviTFIDLAGH--EkY-------LKTTvFGMTGH~PDf~MLMiGaNaGIiGmTKEHLgLALa--L~VPV 276 (641)
T KOG0463|consen 208 LDWVKICEDSAKVITFIDLAGH--EKY-------LKTTVFGMTGHMPDFTMLMIGANAGIIGMTKEHLGLALA--LHVPV 276 (641)
T ss_pred ccceeeccccceeEEEEeccch--hhh-------hheeeeccccCCCCceEEEecccccceeccHHhhhhhhh--hcCcE
Confidence 0011122233346889999994 332 11111 11345788899998877663333333333222 67999
Q ss_pred EEEEeCCCCCChhHHHHHHHHHhhc----------------------------CCCccEEEcccCCCCCHHHHHHHHHhh
Q 014942 230 LLVLNKKDLIKPGEIAKKLEWYEKF----------------------------TDVDEVIPVSAKYGHGVEDIRDWILTK 281 (415)
Q Consensus 230 ilV~NK~Dl~~~~~~~~~~~~~~~~----------------------------~~~~~i~~vSA~~g~gv~eL~~~L~~~ 281 (415)
++|++|+|+.....+.+....+... ...+|+|.+|-.+|.|++-|..+| ..
T Consensus 277 fvVVTKIDMCPANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkmFL-Nl 355 (641)
T KOG0463|consen 277 FVVVTKIDMCPANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKMFL-NL 355 (641)
T ss_pred EEEEEeeccCcHHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHHHH-hh
Confidence 9999999999877766555443321 124689999999999997665554 45
Q ss_pred CCC
Q 014942 282 LPL 284 (415)
Q Consensus 282 l~~ 284 (415)
++.
T Consensus 356 ls~ 358 (641)
T KOG0463|consen 356 LSL 358 (641)
T ss_pred cCc
Confidence 544
No 365
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.36 E-value=3.4e-07 Score=79.68 Aligned_cols=57 Identities=30% Similarity=0.387 Sum_probs=34.9
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCceee---eeC----CCCceEEeEEEEEeCCCeeEEEEeCCCCch
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQKLSI---VTN----KPQTTRHRILGICSGPEYQMILYDTPGIIE 175 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~~~~---~~~----~~~tt~~~~~~~~~~~~~~l~liDtpG~~~ 175 (415)
..++++|++|||||||+|+|++..... ++. -..||+......+.. ...++||||+..
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~---g~~iIDTPGf~~ 99 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPD---GGYIIDTPGFRS 99 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETT---SEEEECSHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCC---CcEEEECCCCCc
Confidence 479999999999999999999874322 222 223555544333322 568999999743
No 366
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.34 E-value=1.5e-05 Score=77.61 Aligned_cols=148 Identities=15% Similarity=0.228 Sum_probs=80.6
Q ss_pred ccEEEEEecCCCCHHHHHHHHhC------CceeeeeCCCCc-----------eEEeEEEEE------------------e
Q 014942 115 SGYVAVLGKPNVGKSTLANQMIG------QKLSIVTNKPQT-----------TRHRILGIC------------------S 159 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~~------~~~~~~~~~~~t-----------t~~~~~~~~------------------~ 159 (415)
...++++|++|+||||++..|.+ .++..+...+.. .+..+.... .
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~~ 193 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAAK 193 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHHH
Confidence 44899999999999999988853 233333222110 000011000 1
Q ss_pred CCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhh-----hcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEe
Q 014942 160 GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA-----GINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLN 234 (415)
Q Consensus 160 ~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~-----~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~N 234 (415)
..++.++++||||..+.....+. .+. .+... -..++.+++|+|++.+...... ....... -.+.-+|+|
T Consensus 194 ~~~~D~ViIDTaGr~~~~~~l~~-eL~-~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~-a~~f~~~---~~~~giIlT 267 (318)
T PRK10416 194 ARGIDVLIIDTAGRLHNKTNLME-ELK-KIKRVIKKADPDAPHEVLLVLDATTGQNALSQ-AKAFHEA---VGLTGIILT 267 (318)
T ss_pred hCCCCEEEEeCCCCCcCCHHHHH-HHH-HHHHHHhhhcCCCCceEEEEEECCCChHHHHH-HHHHHhh---CCCCEEEEE
Confidence 24468999999997543222221 111 11111 1346789999999866543332 2222221 234578999
Q ss_pred CCCCCChhHHHHHHHHHhhcCCCccEEEcccCCCCCHHHH
Q 014942 235 KKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDI 274 (415)
Q Consensus 235 K~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gv~eL 274 (415)
|.|...... ......... ..|+..++ +|+++++|
T Consensus 268 KlD~t~~~G--~~l~~~~~~--~~Pi~~v~--~Gq~~~Dl 301 (318)
T PRK10416 268 KLDGTAKGG--VVFAIADEL--GIPIKFIG--VGEGIDDL 301 (318)
T ss_pred CCCCCCCcc--HHHHHHHHH--CCCEEEEe--CCCChhhC
Confidence 999654321 112222221 24788887 88888775
No 367
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.34 E-value=3e-06 Score=84.14 Aligned_cols=92 Identities=29% Similarity=0.297 Sum_probs=63.0
Q ss_pred HHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChh----HHHHHHHHHhhcCCC--ccE
Q 014942 187 KNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG----EIAKKLEWYEKFTDV--DEV 260 (415)
Q Consensus 187 ~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~----~~~~~~~~~~~~~~~--~~i 260 (415)
.....+...++++++|+|+.+........+.+.+ .+.|+++|+||+|+.... .+......+....+. ..+
T Consensus 55 ~~l~~~~~~~~~Il~VvD~~d~~~s~~~~l~~~~----~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~~~~i 130 (360)
T TIGR03597 55 NLLNSLGDSNALIVYVVDIFDFEGSLIPELKRFV----GGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLKPVDI 130 (360)
T ss_pred HHHhhcccCCcEEEEEEECcCCCCCccHHHHHHh----CCCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcCCCcCcE
Confidence 3344556789999999999876655545555443 367999999999997532 222222222222232 258
Q ss_pred EEcccCCCCCHHHHHHHHHhhC
Q 014942 261 IPVSAKYGHGVEDIRDWILTKL 282 (415)
Q Consensus 261 ~~vSA~~g~gv~eL~~~L~~~l 282 (415)
+.+||++|.|+++|++.|.+..
T Consensus 131 ~~vSAk~g~gv~eL~~~l~~~~ 152 (360)
T TIGR03597 131 ILVSAKKGNGIDELLDKIKKAR 152 (360)
T ss_pred EEecCCCCCCHHHHHHHHHHHh
Confidence 9999999999999999997753
No 368
>PRK00098 GTPase RsgA; Reviewed
Probab=98.29 E-value=2.5e-06 Score=82.58 Aligned_cols=83 Identities=23% Similarity=0.334 Sum_probs=57.6
Q ss_pred hcccceEEEEecCCCCC--chHHHHHHHHhcccCCCCCEEEEEeCCCCCC-hhHHHHHHHHHhhcCCCccEEEcccCCCC
Q 014942 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIK-PGEIAKKLEWYEKFTDVDEVIPVSAKYGH 269 (415)
Q Consensus 193 ~~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~-~~~~~~~~~~~~~~~~~~~i~~vSA~~g~ 269 (415)
+.++|++++|+|+.++. ......++..+.. .++|+++|+||+|+.. ..........+... + .+++++||++|.
T Consensus 78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~~--~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~~-g-~~v~~vSA~~g~ 153 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA--NGIKPIIVLNKIDLLDDLEEARELLALYRAI-G-YDVLELSAKEGE 153 (298)
T ss_pred eecCCEEEEEEECCCCCCCHHHHHHHHHHHHH--CCCCEEEEEEhHHcCCCHHHHHHHHHHHHHC-C-CeEEEEeCCCCc
Confidence 58999999999997653 2222223333344 6799999999999973 33333333444332 3 479999999999
Q ss_pred CHHHHHHHHH
Q 014942 270 GVEDIRDWIL 279 (415)
Q Consensus 270 gv~eL~~~L~ 279 (415)
|+++|++.|.
T Consensus 154 gi~~L~~~l~ 163 (298)
T PRK00098 154 GLDELKPLLA 163 (298)
T ss_pred cHHHHHhhcc
Confidence 9999998874
No 369
>PRK13796 GTPase YqeH; Provisional
Probab=98.29 E-value=2e-06 Score=85.56 Aligned_cols=90 Identities=26% Similarity=0.233 Sum_probs=61.1
Q ss_pred Hhhhcccc-eEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChh----HHHHHHHHHhhcCC--CccEEE
Q 014942 190 RSAGINAD-CIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG----EIAKKLEWYEKFTD--VDEVIP 262 (415)
Q Consensus 190 ~~~~~~aD-~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~----~~~~~~~~~~~~~~--~~~i~~ 262 (415)
...+..+| ++++|+|+.+........+.+.. .+.|+++|+||+|+.... .+......+....+ ...++.
T Consensus 63 l~~i~~~~~lIv~VVD~~D~~~s~~~~L~~~~----~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~~~~v~~ 138 (365)
T PRK13796 63 LNGIGDSDALVVNVVDIFDFNGSWIPGLHRFV----GNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRPVDVVL 138 (365)
T ss_pred HHhhcccCcEEEEEEECccCCCchhHHHHHHh----CCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCCcCcEEE
Confidence 34456566 99999999876555444444433 367999999999997532 22222222222222 236899
Q ss_pred cccCCCCCHHHHHHHHHhhCC
Q 014942 263 VSAKYGHGVEDIRDWILTKLP 283 (415)
Q Consensus 263 vSA~~g~gv~eL~~~L~~~l~ 283 (415)
+||++|.|+++|++.|.+...
T Consensus 139 vSAk~g~gI~eL~~~I~~~~~ 159 (365)
T PRK13796 139 ISAQKGHGIDELLEAIEKYRE 159 (365)
T ss_pred EECCCCCCHHHHHHHHHHhcC
Confidence 999999999999999987653
No 370
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=98.25 E-value=1.5e-06 Score=71.99 Aligned_cols=113 Identities=22% Similarity=0.175 Sum_probs=65.7
Q ss_pred EEEEEecCCCCHHHHHHHHhCCceeeeeCCCC-ceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhcc
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQ-TTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~-tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (415)
+|+++|..|+|||+|+.++....+. ..+. .|.. +..+| ..+.+.
T Consensus 2 kvv~~G~~gvGKt~l~~~~~~~~~~---~~~~~~t~~------------~~~~~--------------------~~~~~s 46 (124)
T smart00010 2 KVVGIGDSGVGKVGKSARFVQFPFD---YVPTVFTIG------------IDVYD--------------------PTSYES 46 (124)
T ss_pred EEEEECCCChhHHHHHHHHhcCCcc---ccCceehhh------------hhhcc--------------------ccccCC
Confidence 7999999999999999999665543 1111 1110 11111 112467
Q ss_pred cceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHHHHHHHhhcCCCccEEEcccCCCCCHH
Q 014942 196 ADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVE 272 (415)
Q Consensus 196 aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gv~ 272 (415)
++.++.|++..........|...++.....+.|.++++||.|+.....+.. + . ..+++.+||++|.|+.
T Consensus 47 ~~~~~~v~~~~~~~s~~~~~~~~i~~~~k~dl~~~~~~nk~dl~~~~~~~~--~-~-----~~~~~~~s~~~~~~~~ 115 (124)
T smart00010 47 FDVVLQCWRVDDRDSADNKNVPEVLVGNKSDLPILVGGNRDVLEEERQVAT--E-E-----GLEFAETSAKTPEEGE 115 (124)
T ss_pred CCEEEEEEEccCHHHHHHHhHHHHHhcCCCCCcEEEEeechhhHhhCcCCH--H-H-----HHHHHHHhCCCcchhh
Confidence 788888787664332111133333322235688999999999843222111 1 1 1145678999999984
No 371
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.24 E-value=3.8e-05 Score=73.24 Aligned_cols=147 Identities=17% Similarity=0.225 Sum_probs=79.5
Q ss_pred ccEEEEEecCCCCHHHHHHHHh------CCceeeeeCCCCc-----------eEEeEEEEE------------------e
Q 014942 115 SGYVAVLGKPNVGKSTLANQMI------GQKLSIVTNKPQT-----------TRHRILGIC------------------S 159 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~------~~~~~~~~~~~~t-----------t~~~~~~~~------------------~ 159 (415)
...|+++|++|+||||++..|. |.++..+...+.. .+....... .
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~~ 151 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAK 151 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHHH
Confidence 3478999999999999888774 3334333322110 000000000 1
Q ss_pred CCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhh-----cccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEe
Q 014942 160 GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG-----INADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLN 234 (415)
Q Consensus 160 ~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~-----~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~N 234 (415)
..++.++++||||..+.....+ ..+ +.+.... ..+|.+++|+|++.+.... .......+. . .+.-+|+|
T Consensus 152 ~~~~D~ViIDT~G~~~~d~~~~-~el-~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~-~~~~~f~~~--~-~~~g~IlT 225 (272)
T TIGR00064 152 ARNIDVVLIDTAGRLQNKVNLM-DEL-KKIKRVIKKVDKDAPDEVLLVLDATTGQNAL-EQAKVFNEA--V-GLTGIILT 225 (272)
T ss_pred HCCCCEEEEeCCCCCcchHHHH-HHH-HHHHHHHhcccCCCCceEEEEEECCCCHHHH-HHHHHHHhh--C-CCCEEEEE
Confidence 2456899999999754221111 111 1111212 2489999999997554333 223333322 1 24678999
Q ss_pred CCCCCChhH-HHHHHHHHhhcCCCccEEEcccCCCCCHHHH
Q 014942 235 KKDLIKPGE-IAKKLEWYEKFTDVDEVIPVSAKYGHGVEDI 274 (415)
Q Consensus 235 K~Dl~~~~~-~~~~~~~~~~~~~~~~i~~vSA~~g~gv~eL 274 (415)
|+|...... +....... + .|+..++ +|+++++|
T Consensus 226 KlDe~~~~G~~l~~~~~~----~-~Pi~~~~--~Gq~~~dl 259 (272)
T TIGR00064 226 KLDGTAKGGIILSIAYEL----K-LPIKFIG--VGEKIDDL 259 (272)
T ss_pred ccCCCCCccHHHHHHHHH----C-cCEEEEe--CCCChHhC
Confidence 999864322 22222211 2 4777776 78888765
No 372
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.23 E-value=4.3e-06 Score=80.50 Aligned_cols=83 Identities=25% Similarity=0.343 Sum_probs=58.6
Q ss_pred hcccceEEEEecCCCCC---chHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHHHHHHHhhcCCCccEEEcccCCCC
Q 014942 193 GINADCIVVLVDACKAP---ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGH 269 (415)
Q Consensus 193 ~~~aD~ii~VvD~~~~~---~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~ 269 (415)
+.++|++++|+|+.++. ...+.++. .+.. .++|+++|+||+|+............+.. .+ .+++++||++|.
T Consensus 76 ~anvD~vllV~d~~~p~~s~~~ldr~L~-~~~~--~~ip~iIVlNK~DL~~~~~~~~~~~~~~~-~g-~~v~~vSA~~g~ 150 (287)
T cd01854 76 AANVDQLVIVVSLNEPFFNPRLLDRYLV-AAEA--AGIEPVIVLTKADLLDDEEEELELVEALA-LG-YPVLAVSAKTGE 150 (287)
T ss_pred EEeCCEEEEEEEcCCCCCCHHHHHHHHH-HHHH--cCCCEEEEEEHHHCCChHHHHHHHHHHHh-CC-CeEEEEECCCCc
Confidence 78999999999998765 33334333 3333 57899999999999765332222222222 23 489999999999
Q ss_pred CHHHHHHHHHh
Q 014942 270 GVEDIRDWILT 280 (415)
Q Consensus 270 gv~eL~~~L~~ 280 (415)
|+++|+..|..
T Consensus 151 gi~~L~~~L~~ 161 (287)
T cd01854 151 GLDELREYLKG 161 (287)
T ss_pred cHHHHHhhhcc
Confidence 99999988764
No 373
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=98.22 E-value=8.6e-07 Score=85.65 Aligned_cols=64 Identities=28% Similarity=0.403 Sum_probs=52.5
Q ss_pred CCCCccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhh
Q 014942 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177 (415)
Q Consensus 111 ~~~~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~ 177 (415)
++.+...|+++|.||+||||++|.|...+++.+.+.||.|....+..+.. +|.+|||||+...+
T Consensus 303 ~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQYItLmk---rIfLIDcPGvVyps 366 (572)
T KOG2423|consen 303 SDKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQYITLMK---RIFLIDCPGVVYPS 366 (572)
T ss_pred cCccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHHHHHHh---ceeEecCCCccCCC
Confidence 35567789999999999999999999999999999999997654433332 88999999986543
No 374
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=98.19 E-value=1.4e-05 Score=77.67 Aligned_cols=154 Identities=21% Similarity=0.343 Sum_probs=92.4
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCc----eeeeeCCCC-----------c----eEEeEEEE--Ee---------------
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQK----LSIVTNKPQ-----------T----TRHRILGI--CS--------------- 159 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~----~~~~~~~~~-----------t----t~~~~~~~--~~--------------- 159 (415)
|..+|.|.=|+|||||+|.|+... ++..-+..| . ......+. ++
T Consensus 2 pVtvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~~ 81 (323)
T COG0523 2 PVTVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLRR 81 (323)
T ss_pred CEEEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHhc
Confidence 357888999999999999998543 332111110 0 01111111 11
Q ss_pred CCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhcccceEEEEecCCCCCchHH---HHHHHHhcccCCCCCEEEEEeCC
Q 014942 160 GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERID---EILEEGVGDHKDKLPILLVLNKK 236 (415)
Q Consensus 160 ~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~---~~l~~~l~~~~~~~piilV~NK~ 236 (415)
.+....++|.|.|+.+ +...+...+........-..|.+|-|||+.+...... .....++.. -=++|+||+
T Consensus 82 ~~~~D~ivIEtTGlA~-P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~-----AD~ivlNK~ 155 (323)
T COG0523 82 RDRPDRLVIETTGLAD-PAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAF-----ADVIVLNKT 155 (323)
T ss_pred cCCCCEEEEeCCCCCC-CHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHh-----CcEEEEecc
Confidence 2235688999999854 3232222222111122335688999999987554332 333333332 237899999
Q ss_pred CCCChhHHHHHHHHHhhcCCCccEEEcccCCCCCHHHHHH
Q 014942 237 DLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRD 276 (415)
Q Consensus 237 Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gv~eL~~ 276 (415)
|+.++..+......+....+..+++.+|. .+.+..+++.
T Consensus 156 Dlv~~~~l~~l~~~l~~lnp~A~i~~~~~-~~~~~~~ll~ 194 (323)
T COG0523 156 DLVDAEELEALEARLRKLNPRARIIETSY-GDVDLAELLD 194 (323)
T ss_pred cCCCHHHHHHHHHHHHHhCCCCeEEEccc-cCCCHHHhhc
Confidence 99998887777888888888889999887 4444444443
No 375
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=98.18 E-value=3.9e-05 Score=72.73 Aligned_cols=59 Identities=17% Similarity=0.171 Sum_probs=40.6
Q ss_pred CCCCEEEEEeCCCCCCh---------hHHH---HHHHHHhhcCCCccEEEcccCCCCCHHHHHHHHHhhCCC
Q 014942 225 DKLPILLVLNKKDLIKP---------GEIA---KKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPL 284 (415)
Q Consensus 225 ~~~piilV~NK~Dl~~~---------~~~~---~~~~~~~~~~~~~~i~~vSA~~g~gv~eL~~~L~~~l~~ 284 (415)
-++|+++|++|||...- +... ..+..++...+ ...|.+|++...|++-|..+|+.....
T Consensus 221 lGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~G-aaLiyTSvKE~KNidllyKYivhr~yG 291 (473)
T KOG3905|consen 221 LGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYG-AALIYTSVKETKNIDLLYKYIVHRSYG 291 (473)
T ss_pred CCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcC-ceeEEeecccccchHHHHHHHHHHhcC
Confidence 46899999999998421 1111 11222222223 368999999999999999999987654
No 376
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.18 E-value=2.7e-06 Score=80.81 Aligned_cols=58 Identities=31% Similarity=0.385 Sum_probs=39.5
Q ss_pred ccEEEEEecCCCCHHHHHHHHhCCcee---eeeC----CCCceEEeEEEEEeCCCeeEEEEeCCCCch
Q 014942 115 SGYVAVLGKPNVGKSTLANQMIGQKLS---IVTN----KPQTTRHRILGICSGPEYQMILYDTPGIIE 175 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~~~~~~---~~~~----~~~tt~~~~~~~~~~~~~~l~liDtpG~~~ 175 (415)
....+++|++|||||||+|+|.+.... .++. ...||++.....+..++ .++||||+..
T Consensus 164 ~~~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~ 228 (301)
T COG1162 164 GKITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRS 228 (301)
T ss_pred CCeEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCc
Confidence 347899999999999999999874322 2222 23466665544443332 5899999854
No 377
>PRK00098 GTPase RsgA; Reviewed
Probab=98.16 E-value=2.5e-06 Score=82.58 Aligned_cols=58 Identities=31% Similarity=0.311 Sum_probs=39.4
Q ss_pred ccEEEEEecCCCCHHHHHHHHhCCceeeeeCCC-------CceEEeEEEEEeCCCeeEEEEeCCCCch
Q 014942 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKP-------QTTRHRILGICSGPEYQMILYDTPGIIE 175 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~-------~tt~~~~~~~~~~~~~~l~liDtpG~~~ 175 (415)
...++++|++|||||||+|+|++.....+...+ .||+......+.. ...++||||+..
T Consensus 164 gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~---~~~~~DtpG~~~ 228 (298)
T PRK00098 164 GKVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPG---GGLLIDTPGFSS 228 (298)
T ss_pred CceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCC---CcEEEECCCcCc
Confidence 347999999999999999999987543322222 3565544333332 347899999863
No 378
>PRK14974 cell division protein FtsY; Provisional
Probab=98.16 E-value=4.5e-05 Score=74.68 Aligned_cols=149 Identities=16% Similarity=0.178 Sum_probs=78.6
Q ss_pred CccEEEEEecCCCCHHHHHHHHhC------CceeeeeCCCC---ce----------EEeEEEE----------------E
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIG------QKLSIVTNKPQ---TT----------RHRILGI----------------C 158 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~------~~~~~~~~~~~---tt----------~~~~~~~----------------~ 158 (415)
+...|+++|.+|+||||++..|.. .++..+..... .. ...+... .
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~ 218 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHA 218 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHH
Confidence 345899999999999997777642 23322221110 00 0000000 0
Q ss_pred eCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCC
Q 014942 159 SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDL 238 (415)
Q Consensus 159 ~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl 238 (415)
...+..++++||+|..+.....+ ..+ +.+.. ....|.+++|+|+..+... .......... -..--+++||.|.
T Consensus 219 ~~~~~DvVLIDTaGr~~~~~~lm-~eL-~~i~~-~~~pd~~iLVl~a~~g~d~-~~~a~~f~~~---~~~~giIlTKlD~ 291 (336)
T PRK14974 219 KARGIDVVLIDTAGRMHTDANLM-DEL-KKIVR-VTKPDLVIFVGDALAGNDA-VEQAREFNEA---VGIDGVILTKVDA 291 (336)
T ss_pred HhCCCCEEEEECCCccCCcHHHH-HHH-HHHHH-hhCCceEEEeeccccchhH-HHHHHHHHhc---CCCCEEEEeeecC
Confidence 11245799999999754322222 111 11111 2357899999999765322 2222222221 1235688999998
Q ss_pred CChhHHHHHHHHHhhcCCCccEEEcccCCCCCHHHHH
Q 014942 239 IKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIR 275 (415)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gv~eL~ 275 (415)
...-.. ........ ..|+..++ +|+++++|.
T Consensus 292 ~~~~G~--~ls~~~~~--~~Pi~~i~--~Gq~v~Dl~ 322 (336)
T PRK14974 292 DAKGGA--ALSIAYVI--GKPILFLG--VGQGYDDLI 322 (336)
T ss_pred CCCccH--HHHHHHHH--CcCEEEEe--CCCChhhcc
Confidence 643221 11111111 24777776 799997763
No 379
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=98.14 E-value=2.6e-05 Score=69.59 Aligned_cols=137 Identities=22% Similarity=0.357 Sum_probs=76.4
Q ss_pred cEEEEEecCCCCHHHHHHHHh-----CCceeeeeCCCCce----------EEeEEEE--------------------EeC
Q 014942 116 GYVAVLGKPNVGKSTLANQMI-----GQKLSIVTNKPQTT----------RHRILGI--------------------CSG 160 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~-----~~~~~~~~~~~~tt----------~~~~~~~--------------------~~~ 160 (415)
|.++|.|..|+|||||+++++ +.+...+....+.. ...+... ...
T Consensus 1 Pv~ii~GfLGsGKTTli~~ll~~~~~~~~~~vI~ne~g~~~iD~~~l~~~~~~v~~l~~gcicc~~~~~~~~~l~~l~~~ 80 (178)
T PF02492_consen 1 PVIIITGFLGSGKTTLINHLLKRNRQGERVAVIVNEFGEVNIDAELLQEDGVPVVELNNGCICCTLRDDLVEALRRLLRE 80 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHTTTS-EEEEECSTTSTHHHHHHHHTTT-EEEEECTTTESS-TTS-HHHHHHHHCCC
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHhcCCceeEEEEccccccccchhhhcccceEEEEecCCCcccccHHHHHHHHHHHHHh
Confidence 468899999999999999999 34444433333210 0011111 112
Q ss_pred C--CeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhcccceEEEEecCCCCC--chHHHHHHHHhcccCCCCCEEEEEeCC
Q 014942 161 P--EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKK 236 (415)
Q Consensus 161 ~--~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~~~~piilV~NK~ 236 (415)
. .....|+.+.|+.+ +.. + .+........-..+.+|.|+|+.+-. ......+...+.. -=++|+||+
T Consensus 81 ~~~~~d~IiIE~sG~a~-p~~-l--~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~-----ADvIvlnK~ 151 (178)
T PF02492_consen 81 YEERPDRIIIETSGLAD-PAP-L--ILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAF-----ADVIVLNKI 151 (178)
T ss_dssp CHGC-SEEEEEEECSSG-GGG-H--HHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT------SEEEEE-G
T ss_pred cCCCcCEEEECCccccc-cch-h--hhccccccccccccceeEEeccccccccccchhhhhhcchh-----cCEEEEecc
Confidence 2 45788999999744 222 2 11112222234678999999996421 2223344444443 237899999
Q ss_pred CCCChh-HHHHHHHHHhhcCCCccEE
Q 014942 237 DLIKPG-EIAKKLEWYEKFTDVDEVI 261 (415)
Q Consensus 237 Dl~~~~-~~~~~~~~~~~~~~~~~i~ 261 (415)
|+.+.. .+....+.++...+..+++
T Consensus 152 D~~~~~~~i~~~~~~ir~lnp~a~Iv 177 (178)
T PF02492_consen 152 DLVSDEQKIERVREMIRELNPKAPIV 177 (178)
T ss_dssp GGHHHH--HHHHHHHHHHH-TTSEEE
T ss_pred ccCChhhHHHHHHHHHHHHCCCCEEe
Confidence 998766 3466666777666666654
No 380
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=98.09 E-value=8.9e-06 Score=79.08 Aligned_cols=154 Identities=18% Similarity=0.184 Sum_probs=91.1
Q ss_pred CCccEEEEEecCCCCHHHHHHHHhCCceee------------------------eeC------CCCceEEeEEEEEeCCC
Q 014942 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSI------------------------VTN------KPQTTRHRILGICSGPE 162 (415)
Q Consensus 113 ~~~~~V~ivG~~~vGKSSLln~l~~~~~~~------------------------~~~------~~~tt~~~~~~~~~~~~ 162 (415)
....+++++|+..+||||+-..|+...... .-+ ..+.|...-...+....
T Consensus 77 k~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte~ 156 (501)
T KOG0459|consen 77 KEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETEN 156 (501)
T ss_pred CCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEecc
Confidence 345589999999999999988775322110 111 11233333344566667
Q ss_pred eeEEEEeCCCCchhhhhhHhHHHHHHHHhhhcccceEEEEecCCCCCc-------hHHHHHHHHhcccCCCCCEEEEEeC
Q 014942 163 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPE-------RIDEILEEGVGDHKDKLPILLVLNK 235 (415)
Q Consensus 163 ~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~-------~~~~~l~~~l~~~~~~~piilV~NK 235 (415)
..+.+.|+||+ .++ ...+.....+||+.++|+.+..+.. -+......+.+.. .-...|+++||
T Consensus 157 ~~ftiLDApGH--k~f-------v~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~-gv~~lVv~vNK 226 (501)
T KOG0459|consen 157 KRFTILDAPGH--KSF-------VPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTA-GVKHLIVLINK 226 (501)
T ss_pred eeEEeeccCcc--ccc-------chhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhh-ccceEEEEEEe
Confidence 79999999994 332 2333444678999999999864431 0112222222221 34568999999
Q ss_pred CCCCChh----HHHHHH----HHHhhc----CCCccEEEcccCCCCCHHHHHH
Q 014942 236 KDLIKPG----EIAKKL----EWYEKF----TDVDEVIPVSAKYGHGVEDIRD 276 (415)
Q Consensus 236 ~Dl~~~~----~~~~~~----~~~~~~----~~~~~i~~vSA~~g~gv~eL~~ 276 (415)
+|-+..+ ...+.. ..+... ..-..++++|..+|.++.+..+
T Consensus 227 MddPtvnWs~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 227 MDDPTVNWSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred ccCCccCcchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 9976321 111111 222211 1223579999999999988765
No 381
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=98.07 E-value=7.6e-05 Score=75.09 Aligned_cols=75 Identities=20% Similarity=0.271 Sum_probs=46.4
Q ss_pred eEEEEeCCCCchhhh----hhHhHHHHHHHHhhhcccceEEEEecCCCC--CchHHHHHHHHhcccCCCCCEEEEEeCCC
Q 014942 164 QMILYDTPGIIEKKI----HMLDSMMMKNVRSAGINADCIVVLVDACKA--PERIDEILEEGVGDHKDKLPILLVLNKKD 237 (415)
Q Consensus 164 ~l~liDtpG~~~~~~----~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~--~~~~~~~l~~~l~~~~~~~piilV~NK~D 237 (415)
+++++|.||+...-. ...........+.++.+.++||+|+--..- .......+...+.. .+...|+|++|+|
T Consensus 413 RMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAERSnVTDLVsq~DP--~GrRTIfVLTKVD 490 (980)
T KOG0447|consen 413 RMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAERSIVTDLVSQMDP--HGRRTIFVLTKVD 490 (980)
T ss_pred eeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchhhhhHHHHHHhcCC--CCCeeEEEEeecc
Confidence 689999999864211 112233445677889999999999853211 11111122222333 6788999999999
Q ss_pred CCC
Q 014942 238 LIK 240 (415)
Q Consensus 238 l~~ 240 (415)
+..
T Consensus 491 lAE 493 (980)
T KOG0447|consen 491 LAE 493 (980)
T ss_pred hhh
Confidence 864
No 382
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.07 E-value=5.6e-06 Score=79.67 Aligned_cols=56 Identities=34% Similarity=0.396 Sum_probs=38.9
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCceeee---e----CCCCceEEeEEEEEeCCCeeEEEEeCCCCc
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQKLSIV---T----NKPQTTRHRILGICSGPEYQMILYDTPGII 174 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~~~~~---~----~~~~tt~~~~~~~~~~~~~~l~liDtpG~~ 174 (415)
..++++|++|||||||+|+|++.....+ + ...+||+......+.. ...++||||+.
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~---~~~liDtPG~~ 224 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPG---GGLLIDTPGFR 224 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCC---CCEEEECCCCC
Confidence 4799999999999999999998754322 1 1233666554433332 23689999984
No 383
>KOG2484 consensus GTPase [General function prediction only]
Probab=98.07 E-value=1.7e-06 Score=84.05 Aligned_cols=62 Identities=34% Similarity=0.442 Sum_probs=51.4
Q ss_pred CCccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhh
Q 014942 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177 (415)
Q Consensus 113 ~~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~ 177 (415)
.++.+|+|+|.|||||||+||+|...+...+...||.|+......+ +..+.|+|.||+.-.+
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~L---dk~i~llDsPgiv~~~ 311 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVKL---DKKIRLLDSPGIVPPS 311 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhheec---cCCceeccCCceeecC
Confidence 4567999999999999999999999998889999999986554333 3489999999986543
No 384
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.05 E-value=3.2e-05 Score=76.56 Aligned_cols=124 Identities=16% Similarity=0.234 Sum_probs=67.0
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCC--------ceeeeeCCCCc-------------eEEeEEEE----------EeCCC
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQ--------KLSIVTNKPQT-------------TRHRILGI----------CSGPE 162 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~--------~~~~~~~~~~t-------------t~~~~~~~----------~~~~~ 162 (415)
+...++++|++||||||++.+|... ++..++..... ........ ....+
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~ 215 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRN 215 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcC
Confidence 4458999999999999999998642 22222211100 00001111 11245
Q ss_pred eeEEEEeCCCCchhhhhhHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccC-C----CCCEEEEEeCCC
Q 014942 163 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHK-D----KLPILLVLNKKD 237 (415)
Q Consensus 163 ~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~-~----~~piilV~NK~D 237 (415)
..+++|||||..+... .+.+.+ ... .....++-.++|++++.+.......+..+..... + ..+-=+|+||.|
T Consensus 216 ~DlVLIDTaG~~~~d~-~l~e~L-a~L-~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlD 292 (374)
T PRK14722 216 KHMVLIDTIGMSQRDR-TVSDQI-AML-HGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLD 292 (374)
T ss_pred CCEEEEcCCCCCcccH-HHHHHH-HHH-hccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccc
Confidence 6899999999753211 121111 111 1123445678999998877665555444432210 0 012357889999
Q ss_pred CCC
Q 014942 238 LIK 240 (415)
Q Consensus 238 l~~ 240 (415)
-..
T Consensus 293 Et~ 295 (374)
T PRK14722 293 EAS 295 (374)
T ss_pred cCC
Confidence 764
No 385
>PRK12288 GTPase RsgA; Reviewed
Probab=98.05 E-value=2e-05 Score=77.74 Aligned_cols=84 Identities=26% Similarity=0.379 Sum_probs=58.6
Q ss_pred hcccceEEEEecCCCCC--chHHHHHHHHhcccCCCCCEEEEEeCCCCCChhH---HHHHHHHHhhcCCCccEEEcccCC
Q 014942 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE---IAKKLEWYEKFTDVDEVIPVSAKY 267 (415)
Q Consensus 193 ~~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~---~~~~~~~~~~~~~~~~i~~vSA~~ 267 (415)
..++|.+++|++..... ...+.++. .... .++|.++|+||+|+..... .......+... + .+++++||++
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~-~a~~--~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~-g-~~v~~vSA~t 192 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLV-ACET--LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNI-G-YRVLMVSSHT 192 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHH-HHHh--cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhC-C-CeEEEEeCCC
Confidence 56899999999876443 33444443 3333 6789999999999986432 22233333332 2 4899999999
Q ss_pred CCCHHHHHHHHHhh
Q 014942 268 GHGVEDIRDWILTK 281 (415)
Q Consensus 268 g~gv~eL~~~L~~~ 281 (415)
|.|+++|+++|...
T Consensus 193 g~GideL~~~L~~k 206 (347)
T PRK12288 193 GEGLEELEAALTGR 206 (347)
T ss_pred CcCHHHHHHHHhhC
Confidence 99999999999753
No 386
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=98.02 E-value=4.4e-05 Score=77.61 Aligned_cols=156 Identities=21% Similarity=0.207 Sum_probs=92.3
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEe--EEEE-EeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHH
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHR--ILGI-CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~--~~~~-~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~ 190 (415)
+-..+.++|+.++|||.|+++++|+.+.. ...+++... +..+ .......+++-|.+-. ....+.. .
T Consensus 424 ~Vf~C~V~G~k~~GKs~lL~sflgr~~~~--~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~---~~~~l~~------k 492 (625)
T KOG1707|consen 424 KVFQCFVVGPKNCGKSALLQSFLGRSMSD--NNTGTTKPRYAVNSVEVKGQQKYLILREIGED---DQDFLTS------K 492 (625)
T ss_pred eeeeEEEEcCCcCchHHHHHHHhcccccc--ccccCCCCceeeeeeeeccccceEEEeecCcc---ccccccC------c
Confidence 34479999999999999999999987653 222222111 1111 1233445566666532 1111100 0
Q ss_pred hhhcccceEEEEecCCCCCchH-HHHHHHHhcccCCCCCEEEEEeCCCCCChhH-HHHHHHHHhhcCCCccEEEcccCCC
Q 014942 191 SAGINADCIVVLVDACKAPERI-DEILEEGVGDHKDKLPILLVLNKKDLIKPGE-IAKKLEWYEKFTDVDEVIPVSAKYG 268 (415)
Q Consensus 191 ~~~~~aD~ii~VvD~~~~~~~~-~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~i~~vSA~~g 268 (415)
-..||++++++|++++..-. ...+.+.-.. ....|+++|+.|+|+....+ ..-....+....+..+.+.+|.++
T Consensus 493 --e~~cDv~~~~YDsS~p~sf~~~a~v~~~~~~-~~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S~~~- 568 (625)
T KOG1707|consen 493 --EAACDVACLVYDSSNPRSFEYLAEVYNKYFD-LYKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHISSKT- 568 (625)
T ss_pred --cceeeeEEEecccCCchHHHHHHHHHHHhhh-ccCCceEEEeeccccchhhhccCCChHHHHHhcCCCCCeeeccCC-
Confidence 15799999999998654221 1122222111 26899999999999965321 111124455555666778888875
Q ss_pred CCHHHHHHHHHhhCCC
Q 014942 269 HGVEDIRDWILTKLPL 284 (415)
Q Consensus 269 ~gv~eL~~~L~~~l~~ 284 (415)
.+=.++|..|+..+..
T Consensus 569 ~~s~~lf~kL~~~A~~ 584 (625)
T KOG1707|consen 569 LSSNELFIKLATMAQY 584 (625)
T ss_pred CCCchHHHHHHHhhhC
Confidence 2228899999987754
No 387
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=98.01 E-value=9e-06 Score=76.83 Aligned_cols=63 Identities=37% Similarity=0.420 Sum_probs=49.4
Q ss_pred ccEEEEEecCCCCHHHHHHHHhCC-----ceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhh
Q 014942 115 SGYVAVLGKPNVGKSTLANQMIGQ-----KLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~~~-----~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~ 177 (415)
.+.|.|+|-||||||||+|++... +.+.+...||.|+.....+.-.....+.++||||+...+
T Consensus 143 ~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPGil~P~ 210 (335)
T KOG2485|consen 143 EYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRPPVYLIDTPGILVPS 210 (335)
T ss_pred ceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCCceEEecCCCcCCCC
Confidence 458999999999999999998532 455678999999887665544455579999999987543
No 388
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=97.99 E-value=0.00012 Score=74.71 Aligned_cols=62 Identities=23% Similarity=0.231 Sum_probs=42.1
Q ss_pred CCCEEEEEeCCCCCCh---------hHHH---HHHHHHhhcCCCccEEEcccCCCCCHHHHHHHHHhhCCCCCCC
Q 014942 226 KLPILLVLNKKDLIKP---------GEIA---KKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAY 288 (415)
Q Consensus 226 ~~piilV~NK~Dl~~~---------~~~~---~~~~~~~~~~~~~~i~~vSA~~g~gv~eL~~~L~~~l~~~~~~ 288 (415)
++|++||++|+|.... .... ..+..+....+ +.+|.||++...+++-|+.+|...+...|..
T Consensus 196 Gipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yG-AsL~yts~~~~~n~~~L~~yi~h~l~~~~f~ 269 (472)
T PF05783_consen 196 GIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYG-ASLIYTSVKEEKNLDLLYKYILHRLYGFPFK 269 (472)
T ss_pred CcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcC-CeEEEeeccccccHHHHHHHHHHHhccCCCC
Confidence 4799999999997421 1111 12222222222 4688899999999999999999988665543
No 389
>PRK01889 GTPase RsgA; Reviewed
Probab=97.98 E-value=3.1e-05 Score=76.79 Aligned_cols=83 Identities=22% Similarity=0.241 Sum_probs=58.3
Q ss_pred hcccceEEEEecCCCCCch-HHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHHHHHHHhhcCCCccEEEcccCCCCCH
Q 014942 193 GINADCIVVLVDACKAPER-IDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGV 271 (415)
Q Consensus 193 ~~~aD~ii~VvD~~~~~~~-~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gv 271 (415)
..++|.+++|+++...+.. ..+.++..... .+.|.++|+||+||.+... .....+.......+++++||++|.|+
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~--~~i~piIVLNK~DL~~~~~--~~~~~~~~~~~g~~Vi~vSa~~g~gl 185 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWE--SGAEPVIVLTKADLCEDAE--EKIAEVEALAPGVPVLAVSALDGEGL 185 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHH--cCCCEEEEEEChhcCCCHH--HHHHHHHHhCCCCcEEEEECCCCccH
Confidence 5789999999999755543 33344444444 6788899999999986421 12223333233468999999999999
Q ss_pred HHHHHHHH
Q 014942 272 EDIRDWIL 279 (415)
Q Consensus 272 ~eL~~~L~ 279 (415)
++|..+|.
T Consensus 186 ~~L~~~L~ 193 (356)
T PRK01889 186 DVLAAWLS 193 (356)
T ss_pred HHHHHHhh
Confidence 99999985
No 390
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=97.89 E-value=1.9e-05 Score=78.66 Aligned_cols=113 Identities=24% Similarity=0.309 Sum_probs=74.3
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEe---------------E-EEE---------------EeCCCee
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHR---------------I-LGI---------------CSGPEYQ 164 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~---------------~-~~~---------------~~~~~~~ 164 (415)
..+.++.+...|||||...|.....-+.....|.+|.. . ... -...+.-
T Consensus 20 RNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~~FL 99 (842)
T KOG0469|consen 20 RNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGNGFL 99 (842)
T ss_pred ccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCccee
Confidence 36889999999999999999865433322333332211 0 000 1123456
Q ss_pred EEEEeCCCCchhhhhhHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCC
Q 014942 165 MILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI 239 (415)
Q Consensus 165 l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~ 239 (415)
+++||.||+.+. ...+..+++-.|++++|+|.-++.--+.+.++...-. ..+.-++|+||+|..
T Consensus 100 iNLIDSPGHVDF---------SSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~--ERIkPvlv~NK~DRA 163 (842)
T KOG0469|consen 100 INLIDSPGHVDF---------SSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIA--ERIKPVLVMNKMDRA 163 (842)
T ss_pred EEeccCCCcccc---------hhhhhheeEeccCcEEEEEccCceEechHHHHHHHHH--hhccceEEeehhhHH
Confidence 899999997652 2345667899999999999998886666655543322 344446789999963
No 391
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.89 E-value=0.00011 Score=66.73 Aligned_cols=118 Identities=19% Similarity=0.230 Sum_probs=63.6
Q ss_pred EEEEEecCCCCHHHHHHHHh------CCceeeeeCCCCc---e----------EEeEEEE----------------EeCC
Q 014942 117 YVAVLGKPNVGKSTLANQMI------GQKLSIVTNKPQT---T----------RHRILGI----------------CSGP 161 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~------~~~~~~~~~~~~t---t----------~~~~~~~----------------~~~~ 161 (415)
.|+++|++||||||.+-+|. +.++..++..... . ..+.... ....
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~~ 82 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRKK 82 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhhc
Confidence 68999999999999988774 3333333221110 0 0000000 0123
Q ss_pred CeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCCh
Q 014942 162 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (415)
Q Consensus 162 ~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~ 241 (415)
+..++++||||........+ ..+. .+.... ..+-+++|++++.+..... .+...... .+ +-=++++|.|-...
T Consensus 83 ~~D~vlIDT~Gr~~~d~~~~-~el~-~~~~~~-~~~~~~LVlsa~~~~~~~~-~~~~~~~~--~~-~~~lIlTKlDet~~ 155 (196)
T PF00448_consen 83 GYDLVLIDTAGRSPRDEELL-EELK-KLLEAL-NPDEVHLVLSATMGQEDLE-QALAFYEA--FG-IDGLILTKLDETAR 155 (196)
T ss_dssp TSSEEEEEE-SSSSTHHHHH-HHHH-HHHHHH-SSSEEEEEEEGGGGGHHHH-HHHHHHHH--SS-TCEEEEESTTSSST
T ss_pred CCCEEEEecCCcchhhHHHH-HHHH-HHhhhc-CCccceEEEecccChHHHH-HHHHHhhc--cc-CceEEEEeecCCCC
Confidence 45799999999754332222 2221 222222 5778999999987655444 33333332 12 33567999998643
No 392
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.88 E-value=0.00014 Score=70.92 Aligned_cols=143 Identities=20% Similarity=0.327 Sum_probs=77.3
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCC----ceeeeeCCCCce----------EEeEEE-----EEeC--------------
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQ----KLSIVTNKPQTT----------RHRILG-----ICSG-------------- 160 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~----~~~~~~~~~~tt----------~~~~~~-----~~~~-------------- 160 (415)
+-|..+|.|.-|+|||||+|+++.. +++.+.+..|.. ...+.. +++.
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~~~~~riaVi~NEfG~v~iD~~ll~~~~~~v~eL~~GCiCCs~~~~l~~~l~~l~~ 82 (318)
T PRK11537 3 PIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLD 82 (318)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhcccCCcccccccCcCCccccHHHHhCcCceEEEECCCEEEEccCchHHHHHHHHHH
Confidence 3467899999999999999999853 222221111110 000111 0100
Q ss_pred ------CCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhcccceEEEEecCCCCCchHH--HHHHHHhcccCCCCCEEEE
Q 014942 161 ------PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERID--EILEEGVGDHKDKLPILLV 232 (415)
Q Consensus 161 ------~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~--~~l~~~l~~~~~~~piilV 232 (415)
.....+++.|.|+.+ +..-+...+........-..+.++.|+|+.+...... ......+.. -=++|
T Consensus 83 ~~~~~~~~~d~IvIEttG~a~-p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~-----AD~Iv 156 (318)
T PRK11537 83 NLDKGNIQFDRLVIECTGMAD-PGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGY-----ADRIL 156 (318)
T ss_pred HHhccCCCCCEEEEECCCccC-HHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHh-----CCEEE
Confidence 024578999999853 3222222111111111224588999999975432211 112222222 23789
Q ss_pred EeCCCCCChhHHHHHHHHHhhcCCCccEEEcc
Q 014942 233 LNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVS 264 (415)
Q Consensus 233 ~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vS 264 (415)
+||+|+.... ....+.+....+..+++.++
T Consensus 157 lnK~Dl~~~~--~~~~~~l~~lnp~a~i~~~~ 186 (318)
T PRK11537 157 LTKTDVAGEA--EKLRERLARINARAPVYTVV 186 (318)
T ss_pred EeccccCCHH--HHHHHHHHHhCCCCEEEEec
Confidence 9999998743 45556666666677777654
No 393
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.87 E-value=5.9e-05 Score=70.09 Aligned_cols=131 Identities=15% Similarity=0.198 Sum_probs=77.9
Q ss_pred ccEEEEEecCCCCHHHHHHHHhCCceeee---eCCCCceEEeEEEEEeCC--CeeEEEEeCCCCchh-----hhhhHhHH
Q 014942 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIV---TNKPQTTRHRILGICSGP--EYQMILYDTPGIIEK-----KIHMLDSM 184 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~~~~~~~~---~~~~~tt~~~~~~~~~~~--~~~l~liDtpG~~~~-----~~~~l~~~ 184 (415)
+..|..+|.+|.|||||++.|.+.++... ...|+.........+... ..++.++||.|+.+. ++..+-.+
T Consensus 42 ~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iVdy 121 (406)
T KOG3859|consen 42 CFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIVDY 121 (406)
T ss_pred eEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHHHH
Confidence 45899999999999999999999887421 111111111111112222 347899999998542 22222222
Q ss_pred HHHHHHh-------------hh--cccceEEEEecCC-CCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHHHH
Q 014942 185 MMKNVRS-------------AG--INADCIVVLVDAC-KAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKL 248 (415)
Q Consensus 185 ~~~~~~~-------------~~--~~aD~ii~VvD~~-~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~~~ 248 (415)
...+... .+ ...++++|.+..+ +++...+......+. .+..+|-|+-|.|.....++....
T Consensus 122 idaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~LKslDLvtmk~Ld---skVNIIPvIAKaDtisK~eL~~FK 198 (406)
T KOG3859|consen 122 IDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSLKSLDLVTMKKLD---SKVNIIPVIAKADTISKEELKRFK 198 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcchhHHHHHHHHHHh---hhhhhHHHHHHhhhhhHHHHHHHH
Confidence 2222222 12 2467888888776 455555554444333 567888899999998777665443
No 394
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.85 E-value=0.00019 Score=73.64 Aligned_cols=144 Identities=20% Similarity=0.274 Sum_probs=74.9
Q ss_pred CccEEEEEecCCCCHHHHHHHHhC--------CceeeeeCCCCce-----------EE--eEEEEE----------eCCC
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIG--------QKLSIVTNKPQTT-----------RH--RILGIC----------SGPE 162 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~--------~~~~~~~~~~~tt-----------~~--~~~~~~----------~~~~ 162 (415)
+...|+|+|++|+||||++..|.. .++..++..+... .. ...... ...+
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~ 428 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRD 428 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhcc
Confidence 445899999999999999988863 2333333221110 00 001100 1235
Q ss_pred eeEEEEeCCCCchhhhhhHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChh
Q 014942 163 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG 242 (415)
Q Consensus 163 ~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~ 242 (415)
+.++||||||....... +...+ ....... ....++|++++.........+..+ . ...+.-+|+||+|....
T Consensus 429 ~DLVLIDTaG~s~~D~~-l~eeL-~~L~aa~--~~a~lLVLpAtss~~Dl~eii~~f-~---~~~~~gvILTKlDEt~~- 499 (559)
T PRK12727 429 YKLVLIDTAGMGQRDRA-LAAQL-NWLRAAR--QVTSLLVLPANAHFSDLDEVVRRF-A---HAKPQGVVLTKLDETGR- 499 (559)
T ss_pred CCEEEecCCCcchhhHH-HHHHH-HHHHHhh--cCCcEEEEECCCChhHHHHHHHHH-H---hhCCeEEEEecCcCccc-
Confidence 68999999997532221 11111 1122222 234677788776555544433332 2 23467799999997542
Q ss_pred HHHHHHHHHhhcCCCccEEEcccCCCCCH
Q 014942 243 EIAKKLEWYEKFTDVDEVIPVSAKYGHGV 271 (415)
Q Consensus 243 ~~~~~~~~~~~~~~~~~i~~vSA~~g~gv 271 (415)
.-..+....... .++..++ +|.+|
T Consensus 500 -lG~aLsv~~~~~--LPI~yvt--~GQ~V 523 (559)
T PRK12727 500 -FGSALSVVVDHQ--MPITWVT--DGQRV 523 (559)
T ss_pred -hhHHHHHHHHhC--CCEEEEe--CCCCc
Confidence 222333333221 2555544 46666
No 395
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.84 E-value=0.00034 Score=61.92 Aligned_cols=117 Identities=17% Similarity=0.281 Sum_probs=62.7
Q ss_pred EEEEEecCCCCHHHHHHHHh------CCceeeeeCCCCce-----------EE--eEEEE----------------EeCC
Q 014942 117 YVAVLGKPNVGKSTLANQMI------GQKLSIVTNKPQTT-----------RH--RILGI----------------CSGP 161 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~------~~~~~~~~~~~~tt-----------~~--~~~~~----------------~~~~ 161 (415)
.++++|++|+||||++..+. +.++..+...+... .. .+... ....
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHAREE 81 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHHHHHhC
Confidence 47899999999999977764 23333332221110 00 00000 0123
Q ss_pred CeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCC
Q 014942 162 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (415)
Q Consensus 162 ~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~ 240 (415)
+..++++||||........+.. + ..... ....|.+++|+|+..... .........+. .+ ..-+|+||+|...
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~-l-~~l~~-~~~~~~~~lVv~~~~~~~-~~~~~~~~~~~--~~-~~~viltk~D~~~ 153 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEE-L-KKIKR-VVKPDEVLLVVDAMTGQD-AVNQAKAFNEA--LG-ITGVILTKLDGDA 153 (173)
T ss_pred CCCEEEEECcccchhhHHHHHH-H-HHHHh-hcCCCeEEEEEECCCChH-HHHHHHHHHhh--CC-CCEEEEECCcCCC
Confidence 4568999999964321111111 1 11111 234899999999865433 33344444333 23 3567889999864
No 396
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.81 E-value=0.00028 Score=69.50 Aligned_cols=155 Identities=18% Similarity=0.223 Sum_probs=85.2
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCC----ceeeeeCCCCce----------------EEeEEEE----------------
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQ----KLSIVTNKPQTT----------------RHRILGI---------------- 157 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~----~~~~~~~~~~tt----------------~~~~~~~---------------- 157 (415)
+-|..+|.|.-|+|||||+|+++.. ++..+....+.. ...+...
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~~~~~~iavi~Ne~G~~~ID~~ll~~~~~~~~~~~~v~el~nGCiCCs~~~dl~~~ 82 (341)
T TIGR02475 3 KIPVTIVTGFLGAGKTTLIRHLLQNAAGRRIAVIVNEFGDLGIDGEILKACGIEGCSEENIVELANGCICCTVADDFIPT 82 (341)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhccCCCcEEEEECCCccccchHHHHhccccccCCcceEEEeCCCCccccCcHHHHHH
Confidence 4467899999999999999999743 233222221110 0011111
Q ss_pred ----E-eCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhcccceEEEEecCCCCCc----------------------
Q 014942 158 ----C-SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPE---------------------- 210 (415)
Q Consensus 158 ----~-~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~---------------------- 210 (415)
. .......+++.|.|+.+ +. .+-..+........-..|.+|.|+|+.+...
T Consensus 83 l~~l~~~~~~~d~IvIEtsG~a~-P~-~i~~~~~~~~l~~~~~l~~vvtvVDa~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (341)
T TIGR02475 83 MTKLLARRQRPDHILIETSGLAL-PK-PLVQAFQWPEIRSRVTVDGVVTVVDGPAVAAGRFAADPDALDAQRAADDNLDH 160 (341)
T ss_pred HHHHHhccCCCCEEEEeCCCCCC-HH-HHHHHhcCccccceEEeeeEEEEEECchhhhhccccchhhhhhhccccccccc
Confidence 0 01234678999999843 22 2222221001111225688999999974321
Q ss_pred --hHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHHHHHHHhhcCC-CccEEEcccCCCCCHHHHHH
Q 014942 211 --RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTD-VDEVIPVSAKYGHGVEDIRD 276 (415)
Q Consensus 211 --~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~-~~~i~~vSA~~g~gv~eL~~ 276 (415)
.....+...+.. .=++|+||+|+.....+....+.+....+ ..+++.++ ........++.
T Consensus 161 ~~~~~~~~~~Qi~~-----AD~IvlnK~Dl~~~~~l~~~~~~l~~~~~~~a~i~~~~-~~~v~~~~ll~ 223 (341)
T TIGR02475 161 ETPLEELFEDQLAC-----ADLVILNKADLLDAAGLARVRAEIAAELPRAVKIVEAS-HGEVDARVLLG 223 (341)
T ss_pred cchHHHHHHHHHHh-----CCEEEEeccccCCHHHHHHHHHHHHHhCCCCCEEEEcc-cCCCCHHHHhC
Confidence 001122222222 24789999999998888887777776444 34666654 22344444444
No 397
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.81 E-value=3.9e-05 Score=75.84 Aligned_cols=119 Identities=19% Similarity=0.274 Sum_probs=64.8
Q ss_pred ccEEEEEecCCCCHHHHHHHHhC------CceeeeeCCCCc--------e-----EEeEEEEE------------e-CCC
Q 014942 115 SGYVAVLGKPNVGKSTLANQMIG------QKLSIVTNKPQT--------T-----RHRILGIC------------S-GPE 162 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~~------~~~~~~~~~~~t--------t-----~~~~~~~~------------~-~~~ 162 (415)
...|+++|++||||||++..|.. .++..++..+.. + ..++.... . ..+
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~ 320 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 320 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccC
Confidence 45899999999999999999852 233333222210 0 00000000 0 114
Q ss_pred eeEEEEeCCCCchhhhhhHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCC
Q 014942 163 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (415)
Q Consensus 163 ~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~ 240 (415)
..++||||||..+.....+.+ +.+... ....+.+++|+|++.........+.. ... -..-=+++||.|-..
T Consensus 321 ~DvVLIDTaGRs~kd~~lm~E-L~~~lk--~~~PdevlLVLsATtk~~d~~~i~~~-F~~---~~idglI~TKLDET~ 391 (436)
T PRK11889 321 VDYILIDTAGKNYRASETVEE-MIETMG--QVEPDYICLTLSASMKSKDMIEIITN-FKD---IHIDGIVFTKFDETA 391 (436)
T ss_pred CCEEEEeCccccCcCHHHHHH-HHHHHh--hcCCCeEEEEECCccChHHHHHHHHH-hcC---CCCCEEEEEcccCCC
Confidence 589999999964433222222 111111 12457789999987554443333322 222 123457899999764
No 398
>COG1161 Predicted GTPases [General function prediction only]
Probab=97.80 E-value=3.6e-05 Score=75.24 Aligned_cols=85 Identities=32% Similarity=0.341 Sum_probs=64.9
Q ss_pred HHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHHHHHHHhhcCCCccEEEcccC
Q 014942 187 KNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAK 266 (415)
Q Consensus 187 ~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~ 266 (415)
+.....+..+|+|+.|+|+..+.......+.+... +.|.++|+||+|+.+......+.+.+....+. ..+.+|++
T Consensus 26 ~~~~~~~~~~d~vvevvDar~P~~s~~~~l~~~v~----~k~~i~vlNK~DL~~~~~~~~W~~~~~~~~~~-~~~~v~~~ 100 (322)
T COG1161 26 RQLKEVLKSVDVVVEVVDARDPLGTRNPELERIVK----EKPKLLVLNKADLAPKEVTKKWKKYFKKEEGI-KPIFVSAK 100 (322)
T ss_pred HHHHHhcccCCEEEEEEeccccccccCccHHHHHc----cCCcEEEEehhhcCCHHHHHHHHHHHHhcCCC-ccEEEEee
Confidence 44556688999999999999887665555555553 45669999999999988877777777766433 56788888
Q ss_pred CCCCHHHHHH
Q 014942 267 YGHGVEDIRD 276 (415)
Q Consensus 267 ~g~gv~eL~~ 276 (415)
.+.+...+..
T Consensus 101 ~~~~~~~i~~ 110 (322)
T COG1161 101 SRQGGKKIRK 110 (322)
T ss_pred cccCccchHH
Confidence 8888777774
No 399
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.78 E-value=0.00016 Score=62.59 Aligned_cols=19 Identities=42% Similarity=0.788 Sum_probs=17.5
Q ss_pred EEEEecCCCCHHHHHHHHh
Q 014942 118 VAVLGKPNVGKSTLANQMI 136 (415)
Q Consensus 118 V~ivG~~~vGKSSLln~l~ 136 (415)
|+++|.+|+||||++..+.
T Consensus 2 i~~~G~~GsGKTt~~~~l~ 20 (148)
T cd03114 2 IGITGVPGAGKSTLIDALI 20 (148)
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 7899999999999999885
No 400
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=97.78 E-value=6.4e-05 Score=85.47 Aligned_cols=122 Identities=24% Similarity=0.266 Sum_probs=70.6
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeC-------CCCceEEeEEEEEeCCCeeEEEEeCCCCchhh------hhh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTN-------KPQTTRHRILGICSGPEYQMILYDTPGIIEKK------IHM 180 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~-------~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~------~~~ 180 (415)
.-|=.+|+|++|+||||+++.- |..+..... ..+.|++.-. .+. .+-+++||+|..-.. ...
T Consensus 110 ~LPWYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~w-wf~---~~avliDtaG~y~~~~~~~~~~~~ 184 (1169)
T TIGR03348 110 DLPWYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDW-WFT---DEAVLIDTAGRYTTQDSDPEEDAA 184 (1169)
T ss_pred cCCCEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccce-Eec---CCEEEEcCCCccccCCCcccccHH
Confidence 3456899999999999999986 544432110 1122322111 111 267899999943111 111
Q ss_pred HhHHHHHHHHhh--hcccceEEEEecCCCCCc-----------hHHHHHHHHhcccCCCCCEEEEEeCCCCCC
Q 014942 181 LDSMMMKNVRSA--GINADCIVVLVDACKAPE-----------RIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (415)
Q Consensus 181 l~~~~~~~~~~~--~~~aD~ii~VvD~~~~~~-----------~~~~~l~~~l~~~~~~~piilV~NK~Dl~~ 240 (415)
.-..+....+.+ -+-.++||+++|+.+-.. .....+.++...+....|+.||+||||+..
T Consensus 185 ~W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 185 AWLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLA 257 (1169)
T ss_pred HHHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhc
Confidence 122233333322 245899999999864331 122233344444557899999999999874
No 401
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.77 E-value=8.4e-05 Score=67.82 Aligned_cols=45 Identities=29% Similarity=0.248 Sum_probs=34.1
Q ss_pred hcccceEEEEecCCCCCchHHHHHHHHhcccCCC-CCEEEEEeCCCCC
Q 014942 193 GINADCIVVLVDACKAPERIDEILEEGVGDHKDK-LPILLVLNKKDLI 239 (415)
Q Consensus 193 ~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~-~piilV~NK~Dl~ 239 (415)
.+.+|.+|+|+|.+...-...+.+.++... .+ +++.+|+||+|-.
T Consensus 153 ~~~vD~vivVvDpS~~sl~taeri~~L~~e--lg~k~i~~V~NKv~e~ 198 (255)
T COG3640 153 IEGVDLVIVVVDPSYKSLRTAERIKELAEE--LGIKRIFVVLNKVDEE 198 (255)
T ss_pred ccCCCEEEEEeCCcHHHHHHHHHHHHHHHH--hCCceEEEEEeeccch
Confidence 678999999999886544444556666555 45 7899999999954
No 402
>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]
Probab=97.77 E-value=0.0001 Score=69.28 Aligned_cols=145 Identities=19% Similarity=0.293 Sum_probs=77.4
Q ss_pred CCCCCCccEEEEEecCCCCHHHHHHHHhCC----ceeeeeCCCCceEE------------------------eEEEEE--
Q 014942 109 SHPNHKSGYVAVLGKPNVGKSTLANQMIGQ----KLSIVTNKPQTTRH------------------------RILGIC-- 158 (415)
Q Consensus 109 ~~~~~~~~~V~ivG~~~vGKSSLln~l~~~----~~~~~~~~~~tt~~------------------------~~~~~~-- 158 (415)
..+..+-|.-.|.|.-|+|||||+|.++.. +++..-...|...+ .....+
T Consensus 51 ~~~~~rIPvtIITGyLGaGKtTLLn~Il~~~hgKRIAVIlNEfGes~die~sl~~~~~gg~lyEewv~L~NGClCCtVk~ 130 (391)
T KOG2743|consen 51 SSLGARIPVTIITGYLGAGKTTLLNYILTGQHGKRIAVILNEFGESSDIEKSLAVSQEGGELYEEWVELRNGCLCCTVKD 130 (391)
T ss_pred cCCCCccceEEEEecccCChHHHHHHHHccCCCceEEEEhhhcccchhhhHHHHhccccchHHHHHHHhcCCeEEEEecc
Confidence 344556778889999999999999999743 23322222111000 000001
Q ss_pred -----------eCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhcccceEEEEecCCCCCchHH-----HHHHHHhcc
Q 014942 159 -----------SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERID-----EILEEGVGD 222 (415)
Q Consensus 159 -----------~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~-----~~l~~~l~~ 222 (415)
..+.....++.|.|+.. +..-....+...-...--.-|++|-|+|+.+....++ -.+.+...+
T Consensus 131 ~gvraie~lvqkkGkfD~IllETTGlAn-PaPia~~Fw~dd~l~sdVkLDGIVTvvD~K~~~~~Lde~k~~g~i~EA~~Q 209 (391)
T KOG2743|consen 131 NGVRAIENLVQKKGKFDHILLETTGLAN-PAPIASMFWLDDELGSDVKLDGIVTVVDAKHILKHLDEEKPDGLINEATRQ 209 (391)
T ss_pred hHHHHHHHHHhcCCCcceEEEeccCCCC-cHHHHHHHhhhhhhcCceeeeeEEEEEehhhHHhhhcccCcccchHHHHHH
Confidence 12234678999999854 2222222222222222235699999999975331111 111111111
Q ss_pred cCCCCCEEEEEeCCCCCChhHHHHHHHHHhhcCC
Q 014942 223 HKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTD 256 (415)
Q Consensus 223 ~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~ 256 (415)
-...=-+++||.|+...+.+....+.+.....
T Consensus 210 --iA~AD~II~NKtDli~~e~~~~l~q~I~~INs 241 (391)
T KOG2743|consen 210 --IALADRIIMNKTDLVSEEEVKKLRQRIRSINS 241 (391)
T ss_pred --HhhhheeeeccccccCHHHHHHHHHHHHHhhh
Confidence 01112467999999988777766666554433
No 403
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.72 E-value=0.00031 Score=69.31 Aligned_cols=120 Identities=13% Similarity=0.119 Sum_probs=62.8
Q ss_pred CccEEEEEecCCCCHHHHHHHHhC------CceeeeeCCCCce-------------EEeEEEEEe-------------CC
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIG------QKLSIVTNKPQTT-------------RHRILGICS-------------GP 161 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~------~~~~~~~~~~~tt-------------~~~~~~~~~-------------~~ 161 (415)
+...++++|++||||||++..|.. .++..++..+... ..++....+ ..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~ 284 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVN 284 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcC
Confidence 345789999999999999998852 2333333222111 001111100 13
Q ss_pred CeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCC
Q 014942 162 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (415)
Q Consensus 162 ~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~ 240 (415)
++.++||||||..+.....+.. + ...... ...+.+++|+++.......... .+.+..-.+--+|+||.|-..
T Consensus 285 ~~D~VLIDTAGr~~~d~~~l~E-L-~~l~~~-~~p~~~~LVLsag~~~~d~~~i----~~~f~~l~i~glI~TKLDET~ 356 (407)
T PRK12726 285 CVDHILIDTVGRNYLAEESVSE-I-SAYTDV-VHPDLTCFTFSSGMKSADVMTI----LPKLAEIPIDGFIITKMDETT 356 (407)
T ss_pred CCCEEEEECCCCCccCHHHHHH-H-HHHhhc-cCCceEEEECCCcccHHHHHHH----HHhcCcCCCCEEEEEcccCCC
Confidence 4689999999974422222211 1 111111 2457778888764433333222 222112223467899999764
No 404
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.68 E-value=0.00022 Score=71.27 Aligned_cols=120 Identities=16% Similarity=0.162 Sum_probs=64.8
Q ss_pred ccEEEEEecCCCCHHHHHHHHhCC-------ceeeeeCCCCce-----------E--EeEEEE---------EeCCCeeE
Q 014942 115 SGYVAVLGKPNVGKSTLANQMIGQ-------KLSIVTNKPQTT-----------R--HRILGI---------CSGPEYQM 165 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~~~-------~~~~~~~~~~tt-----------~--~~~~~~---------~~~~~~~l 165 (415)
...++++|++||||||++..|... ++..++..+..+ . ...... +...+..+
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~ 302 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL 302 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence 346899999999999999988632 232222222100 0 000000 11235688
Q ss_pred EEEeCCCCchhhhhhHhHHHHHHHHhhh--cccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCC
Q 014942 166 ILYDTPGIIEKKIHMLDSMMMKNVRSAG--INADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (415)
Q Consensus 166 ~liDtpG~~~~~~~~l~~~~~~~~~~~~--~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~ 240 (415)
++|||||..+.....+.. +. .+.... ....-.++|+|++.+........... .. --+-=+|+||.|-..
T Consensus 303 VLIDTaGr~~rd~~~l~e-L~-~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f-~~---~~~~glIlTKLDEt~ 373 (432)
T PRK12724 303 ILIDTAGYSHRNLEQLER-MQ-SFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAY-ES---LNYRRILLTKLDEAD 373 (432)
T ss_pred EEEeCCCCCccCHHHHHH-HH-HHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHh-cC---CCCCEEEEEcccCCC
Confidence 999999975432222211 11 111212 12346788999987655544433332 22 223467899999764
No 405
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.67 E-value=0.00025 Score=70.07 Aligned_cols=24 Identities=25% Similarity=0.466 Sum_probs=20.6
Q ss_pred CccEEEEEecCCCCHHHHHHHHhC
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~ 137 (415)
+.+.|++||++||||||.+-.|..
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAa 225 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAA 225 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHH
Confidence 366899999999999999888753
No 406
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.63 E-value=0.00063 Score=67.93 Aligned_cols=122 Identities=20% Similarity=0.209 Sum_probs=65.6
Q ss_pred CccEEEEEecCCCCHHHHHHHHhC----------CceeeeeCCCCc--------e-----EEeEEEE----------EeC
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIG----------QKLSIVTNKPQT--------T-----RHRILGI----------CSG 160 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~----------~~~~~~~~~~~t--------t-----~~~~~~~----------~~~ 160 (415)
+...|+++|++||||||.+..|.. .++..++..+.. + ..++... -..
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 345899999999999999987752 233333222210 0 0011111 012
Q ss_pred CCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCC
Q 014942 161 PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (415)
Q Consensus 161 ~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~ 240 (415)
.++.++++||||..+.....+. .+ ..+........-+++|+|++.+.......+.... .-.+-=+++||.|-..
T Consensus 253 ~~~DlVLIDTaGr~~~~~~~l~-el-~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~~----~~~~~~~I~TKlDet~ 326 (388)
T PRK12723 253 KDFDLVLVDTIGKSPKDFMKLA-EM-KELLNACGRDAEFHLAVSSTTKTSDVKEIFHQFS----PFSYKTVIFTKLDETT 326 (388)
T ss_pred CCCCEEEEcCCCCCccCHHHHH-HH-HHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHhc----CCCCCEEEEEeccCCC
Confidence 4568999999997542111111 11 1122222222358899999877555554443321 1124467899999764
Q ss_pred h
Q 014942 241 P 241 (415)
Q Consensus 241 ~ 241 (415)
.
T Consensus 327 ~ 327 (388)
T PRK12723 327 C 327 (388)
T ss_pred c
Confidence 3
No 407
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.62 E-value=0.0034 Score=54.24 Aligned_cols=144 Identities=22% Similarity=0.266 Sum_probs=77.0
Q ss_pred cEEEEEecCCCCHHHHHHHHhCC---c-eeeeeCCCCceEEeEEEEEe--CCCeeEEEEeCC-C------------Cchh
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQ---K-LSIVTNKPQTTRHRILGICS--GPEYQMILYDTP-G------------IIEK 176 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~---~-~~~~~~~~~tt~~~~~~~~~--~~~~~l~liDtp-G------------~~~~ 176 (415)
.+|.|.|+||||||||+.++... + +.. .. .+...+. .....|.++|.. | ..-.
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g~kv-gG-------f~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvG 77 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKGYKV-GG-------FITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVG 77 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcCcee-ee-------EEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccc
Confidence 48999999999999999888631 1 110 00 0000011 111234444443 1 1000
Q ss_pred ----hhhhHhHHHHHHHHhhhcccceEEEEecCCCCCch----HHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHHHH
Q 014942 177 ----KIHMLDSMMMKNVRSAGINADCIVVLVDACKAPER----IDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKL 248 (415)
Q Consensus 177 ----~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~----~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~~~ 248 (415)
.-..+.+.+....+.++..||++| +|--.+.+- ....+.+.+. .++|+|.++.+-+.- ...
T Consensus 78 kY~V~v~~le~i~~~al~rA~~~aDvII--IDEIGpMElks~~f~~~ve~vl~---~~kpliatlHrrsr~------P~v 146 (179)
T COG1618 78 KYGVNVEGLEEIAIPALRRALEEADVII--IDEIGPMELKSKKFREAVEEVLK---SGKPLIATLHRRSRH------PLV 146 (179)
T ss_pred eEEeeHHHHHHHhHHHHHHHhhcCCEEE--EecccchhhccHHHHHHHHHHhc---CCCcEEEEEecccCC------hHH
Confidence 123455566677777888889776 454333322 2223333332 578888888877652 123
Q ss_pred HHHhhcCCCccEEEcccCCCCCHHHHHHHHHhhCC
Q 014942 249 EWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLP 283 (415)
Q Consensus 249 ~~~~~~~~~~~i~~vSA~~g~gv~eL~~~L~~~l~ 283 (415)
+.+...... ++. .+-.|-+.++..+...+.
T Consensus 147 ~~ik~~~~v--~v~---lt~~NR~~i~~~Il~~L~ 176 (179)
T COG1618 147 QRIKKLGGV--YVF---LTPENRNRILNEILSVLK 176 (179)
T ss_pred HHhhhcCCE--EEE---EccchhhHHHHHHHHHhc
Confidence 334433322 222 566777788888877664
No 408
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.62 E-value=0.00017 Score=72.61 Aligned_cols=120 Identities=18% Similarity=0.238 Sum_probs=63.7
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCc--------eeeeeCCCCc-----------eE--EeEEE----------EEeCCC
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQK--------LSIVTNKPQT-----------TR--HRILG----------ICSGPE 162 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~--------~~~~~~~~~t-----------t~--~~~~~----------~~~~~~ 162 (415)
+..+|+++|++|+||||++..|.+.. ...+...... .. ..... .....+
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~ 269 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRG 269 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcC
Confidence 44589999999999999999886531 1111100000 00 00000 011234
Q ss_pred eeEEEEeCCCCchhhhhhHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCC
Q 014942 163 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (415)
Q Consensus 163 ~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~ 240 (415)
..++++||+|..+... .+...+ ..+. ......-.++|+|++.........+... .. --+-=+++||.|-..
T Consensus 270 ~d~VLIDTaGrsqrd~-~~~~~l-~~l~-~~~~~~~~~LVl~at~~~~~~~~~~~~f-~~---~~~~~~I~TKlDEt~ 340 (420)
T PRK14721 270 KHMVLIDTVGMSQRDQ-MLAEQI-AMLS-QCGTQVKHLLLLNATSSGDTLDEVISAY-QG---HGIHGCIITKVDEAA 340 (420)
T ss_pred CCEEEecCCCCCcchH-HHHHHH-HHHh-ccCCCceEEEEEcCCCCHHHHHHHHHHh-cC---CCCCEEEEEeeeCCC
Confidence 5789999999754222 121211 1111 1223456788999886555544433322 22 123457899999764
No 409
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.60 E-value=0.0005 Score=69.70 Aligned_cols=119 Identities=17% Similarity=0.236 Sum_probs=63.2
Q ss_pred CccEEEEEecCCCCHHHHHHHHh------CCceeeeeCCCCce-------------EEeEEEEE--------------eC
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMI------GQKLSIVTNKPQTT-------------RHRILGIC--------------SG 160 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~------~~~~~~~~~~~~tt-------------~~~~~~~~--------------~~ 160 (415)
++..|+++|.+|+||||++..|. |.++..++...... ..+..... ..
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~ 173 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKF 173 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHh
Confidence 34589999999999999988774 22333222211100 00001000 01
Q ss_pred CCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCC-EEEEEeCCCCC
Q 014942 161 PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKDLI 239 (415)
Q Consensus 161 ~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~p-iilV~NK~Dl~ 239 (415)
....++++||||..+.....+.+ +. . ...+..+|.+++|+|++.+. ........ .. ...+ .-+|+||.|..
T Consensus 174 ~~~DvVIIDTAGr~~~d~~lm~E-l~-~-l~~~~~pdevlLVvda~~gq-~av~~a~~-F~---~~l~i~gvIlTKlD~~ 245 (437)
T PRK00771 174 KKADVIIVDTAGRHALEEDLIEE-MK-E-IKEAVKPDEVLLVIDATIGQ-QAKNQAKA-FH---EAVGIGGIIITKLDGT 245 (437)
T ss_pred hcCCEEEEECCCcccchHHHHHH-HH-H-HHHHhcccceeEEEeccccH-HHHHHHHH-HH---hcCCCCEEEEecccCC
Confidence 22478999999965432222211 11 1 12244689999999997753 22222222 11 2233 45789999975
Q ss_pred C
Q 014942 240 K 240 (415)
Q Consensus 240 ~ 240 (415)
.
T Consensus 246 a 246 (437)
T PRK00771 246 A 246 (437)
T ss_pred C
Confidence 3
No 410
>PRK10867 signal recognition particle protein; Provisional
Probab=97.58 E-value=0.0011 Score=67.20 Aligned_cols=119 Identities=18% Similarity=0.239 Sum_probs=61.2
Q ss_pred ccEEEEEecCCCCHHHHHHHHh-------CCceeeeeCCCCce-----------EE--eEEEE----------------E
Q 014942 115 SGYVAVLGKPNVGKSTLANQMI-------GQKLSIVTNKPQTT-----------RH--RILGI----------------C 158 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~-------~~~~~~~~~~~~tt-----------~~--~~~~~----------------~ 158 (415)
...|+++|.+|+||||++-.|. |.++..++..+... .. .+... .
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~~a 179 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALEEA 179 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHHHH
Confidence 3479999999999999666553 33444333221110 00 00000 0
Q ss_pred eCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCC
Q 014942 159 SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDL 238 (415)
Q Consensus 159 ~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl 238 (415)
...++.++++||||..+.....+ ..+ ..+.. .-..+-+++|+|+..+ +............ . ...-+|+||.|-
T Consensus 180 ~~~~~DvVIIDTaGrl~~d~~lm-~eL-~~i~~-~v~p~evllVlda~~g-q~av~~a~~F~~~--~-~i~giIlTKlD~ 252 (433)
T PRK10867 180 KENGYDVVIVDTAGRLHIDEELM-DEL-KAIKA-AVNPDEILLVVDAMTG-QDAVNTAKAFNEA--L-GLTGVILTKLDG 252 (433)
T ss_pred HhcCCCEEEEeCCCCcccCHHHH-HHH-HHHHH-hhCCCeEEEEEecccH-HHHHHHHHHHHhh--C-CCCEEEEeCccC
Confidence 11345799999999643221212 111 11222 2256788999998654 2222222222211 1 124577899996
Q ss_pred CC
Q 014942 239 IK 240 (415)
Q Consensus 239 ~~ 240 (415)
..
T Consensus 253 ~~ 254 (433)
T PRK10867 253 DA 254 (433)
T ss_pred cc
Confidence 53
No 411
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=97.54 E-value=0.0002 Score=64.19 Aligned_cols=75 Identities=21% Similarity=0.301 Sum_probs=39.5
Q ss_pred eEEEEeCCCCchhhhh--hHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHH----HHhcccCCCCCEEEEEeCCC
Q 014942 164 QMILYDTPGIIEKKIH--MLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILE----EGVGDHKDKLPILLVLNKKD 237 (415)
Q Consensus 164 ~l~liDtpG~~~~~~~--~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~----~~l~~~~~~~piilV~NK~D 237 (415)
.+.++|+||... -+. ..-..+.+...+ ..---+++|++|+. -.....+.+. .+........|.|=|++|+|
T Consensus 99 dylifDcPGQIE-LytH~pVm~~iv~hl~~-~~F~~c~Vylldsq-f~vD~~KfiSG~lsAlsAMi~lE~P~INvlsKMD 175 (273)
T KOG1534|consen 99 DYLIFDCPGQIE-LYTHLPVMPQIVEHLKQ-WNFNVCVVYLLDSQ-FLVDSTKFISGCLSALSAMISLEVPHINVLSKMD 175 (273)
T ss_pred CEEEEeCCCeeE-EeecChhHHHHHHHHhc-ccCceeEEEEeccc-hhhhHHHHHHHHHHHHHHHHHhcCcchhhhhHHH
Confidence 688999999653 111 122223333333 11123567777753 1222222221 11111125789999999999
Q ss_pred CCCh
Q 014942 238 LIKP 241 (415)
Q Consensus 238 l~~~ 241 (415)
|.+.
T Consensus 176 Llk~ 179 (273)
T KOG1534|consen 176 LLKD 179 (273)
T ss_pred Hhhh
Confidence 9865
No 412
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.52 E-value=0.00044 Score=67.54 Aligned_cols=74 Identities=23% Similarity=0.219 Sum_probs=54.3
Q ss_pred HHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHHHHHHHhhcCCC
Q 014942 184 MMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDV 257 (415)
Q Consensus 184 ~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~ 257 (415)
.+.+.++..+..+|+||.|+|+.++...-...+.+.......++..|+|+||+|+++.+.+..+..++...++-
T Consensus 135 aY~ke~rkvve~sDVVleVlDARDPlgtR~~~vE~~V~~~~gnKkLILVLNK~DLVPrEv~e~Wl~YLr~~~pt 208 (435)
T KOG2484|consen 135 AYDKEFRKVVEASDVVLEVLDARDPLGTRCPEVEEAVLQAHGNKKLILVLNKIDLVPREVVEKWLVYLRREGPT 208 (435)
T ss_pred HHHHHHHHHHhhhheEEEeeeccCCCCCCChhHHHHHHhccCCceEEEEeehhccCCHHHHHHHHHHHHhhCCc
Confidence 34556677788999999999999987332222333222222458899999999999999999999988876543
No 413
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.51 E-value=0.0014 Score=55.88 Aligned_cols=101 Identities=20% Similarity=0.261 Sum_probs=57.8
Q ss_pred EEEecCCCCHHHHHHHHh------CCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhh
Q 014942 119 AVLGKPNVGKSTLANQMI------GQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (415)
Q Consensus 119 ~ivG~~~vGKSSLln~l~------~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~ 192 (415)
..-|.+|+||||+.-.+. |.....+...++.+. -.+.++++|||+.... .....
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~~~---------~~yd~VIiD~p~~~~~-----------~~~~~ 63 (139)
T cd02038 4 VTSGKGGVGKTNISANLALALAKLGKRVLLLDADLGLAN---------LDYDYIIIDTGAGISD-----------NVLDF 63 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCCCC---------CCCCEEEEECCCCCCH-----------HHHHH
Confidence 345679999999876653 222333332222111 0168999999984321 12244
Q ss_pred hcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCC
Q 014942 193 GINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI 239 (415)
Q Consensus 193 ~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~ 239 (415)
+..+|.++++++.+...-.......+.+.......++.+|+|+++..
T Consensus 64 l~~aD~vviv~~~~~~s~~~~~~~l~~l~~~~~~~~~~lVvN~~~~~ 110 (139)
T cd02038 64 FLAADEVIVVTTPEPTSITDAYALIKKLAKQLRVLNFRVVVNRAESP 110 (139)
T ss_pred HHhCCeEEEEcCCChhHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCH
Confidence 78899999999876433211122222222212456788999999743
No 414
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.50 E-value=0.0003 Score=71.31 Aligned_cols=120 Identities=18% Similarity=0.218 Sum_probs=62.8
Q ss_pred ccEEEEEecCCCCHHHHHHHHhC--------CceeeeeCCCCce-------------EEeEEEE----------EeCCCe
Q 014942 115 SGYVAVLGKPNVGKSTLANQMIG--------QKLSIVTNKPQTT-------------RHRILGI----------CSGPEY 163 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~~--------~~~~~~~~~~~tt-------------~~~~~~~----------~~~~~~ 163 (415)
...++++|++||||||++..|.. .++..++..+... ....... -...+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~~ 300 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRDC 300 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCCC
Confidence 34799999999999998777632 2333333333100 0000000 012346
Q ss_pred eEEEEeCCCCchhhhhhHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCC
Q 014942 164 QMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (415)
Q Consensus 164 ~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~ 240 (415)
.++||||||..+.....+. .+. .+........-+++|++++.........+.. ... .+ +--+++||+|-..
T Consensus 301 DlVlIDt~G~~~~d~~~~~-~L~-~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~-f~~--~~-~~~vI~TKlDet~ 371 (424)
T PRK05703 301 DVILIDTAGRSQRDKRLIE-ELK-ALIEFSGEPIDVYLVLSATTKYEDLKDIYKH-FSR--LP-LDGLIFTKLDETS 371 (424)
T ss_pred CEEEEeCCCCCCCCHHHHH-HHH-HHHhccCCCCeEEEEEECCCCHHHHHHHHHH-hCC--CC-CCEEEEecccccc
Confidence 8999999997443222111 111 1111112335677888887654444433322 222 11 2358899999754
No 415
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=97.46 E-value=0.00088 Score=66.07 Aligned_cols=77 Identities=18% Similarity=0.112 Sum_probs=52.0
Q ss_pred EEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhcccceEEEEecCCCCC------------chHHHHHHHHhcc
Q 014942 155 LGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP------------ERIDEILEEGVGD 222 (415)
Q Consensus 155 ~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~------------~~~~~~l~~~l~~ 222 (415)
...+...+..+.+||.+|.. . ..+.|..++.+++++|||+|.++.. ......+..++..
T Consensus 176 ~~~f~~~~~~~~~~DvgGqr--~-------~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~ 246 (342)
T smart00275 176 ETAFIVKKLFFRMFDVGGQR--S-------ERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNS 246 (342)
T ss_pred EEEEEECCeEEEEEecCCch--h-------hhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcC
Confidence 33456677889999999942 2 2244667789999999999998531 1222233333332
Q ss_pred -cCCCCCEEEEEeCCCCCC
Q 014942 223 -HKDKLPILLVLNKKDLIK 240 (415)
Q Consensus 223 -~~~~~piilV~NK~Dl~~ 240 (415)
...+.|++|++||.|+..
T Consensus 247 ~~~~~~piil~~NK~D~~~ 265 (342)
T smart00275 247 RWFANTSIILFLNKIDLFE 265 (342)
T ss_pred ccccCCcEEEEEecHHhHH
Confidence 126799999999999863
No 416
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=97.43 E-value=0.00012 Score=66.54 Aligned_cols=123 Identities=26% Similarity=0.321 Sum_probs=64.7
Q ss_pred EEEEEecCCCCHHHHHHHH------hCCceeeeeCCCCceEEeEEEE---------------------------------
Q 014942 117 YVAVLGKPNVGKSTLANQM------IGQKLSIVTNKPQTTRHRILGI--------------------------------- 157 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l------~~~~~~~~~~~~~tt~~~~~~~--------------------------------- 157 (415)
-.+|+|+||+||||..+.+ +|+.+..+.-.|..........
T Consensus 4 gqvVIGPPgSGKsTYc~g~~~fls~~gr~~~vVNLDPaNd~~~Y~~~v~I~elit~edvm~~~~LGPNg~l~yc~E~l~~ 83 (290)
T KOG1533|consen 4 GQVVIGPPGSGKSTYCNGMSQFLSAIGRPVAVVNLDPANDNLPYECAVDIRELITVEDVMEELGLGPNGALKYCMEYLEA 83 (290)
T ss_pred ceEEEcCCCCCccchhhhHHHHHHHhCCceEEEecCCcccCCCCCCcccHHHHccHHHHHHHhCCCCchhHHHHHHHHHh
Confidence 3689999999999998765 4666666655554332221100
Q ss_pred --------EeCCCeeEEEEeCCCCchh--hhhhHhHHHHHHHHhhhcccceEEEEecCC---CCCchHHHHHHHHhcccC
Q 014942 158 --------CSGPEYQMILYDTPGIIEK--KIHMLDSMMMKNVRSAGINADCIVVLVDAC---KAPERIDEILEEGVGDHK 224 (415)
Q Consensus 158 --------~~~~~~~l~liDtpG~~~~--~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~---~~~~~~~~~l~~~l~~~~ 224 (415)
+......+.++|+||..+- ....+...+. ...+ ..-.-+++-++|+. ++..-+...+..+...+.
T Consensus 84 ~idwl~~~l~~~~~~Y~lFDcPGQVELft~h~~l~~I~~-~Lek-~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl~ 161 (290)
T KOG1533|consen 84 NIDWLLEKLKPLTDHYVLFDCPGQVELFTHHDSLNKIFR-KLEK-LDYRLVAVNLIDSHYCSDPSKFISSLLVSLATMLH 161 (290)
T ss_pred hhHHHHHHhhhccCcEEEEeCCCcEEEEeccchHHHHHH-HHHH-cCceEEEEEeeeceeeCChHHHHHHHHHHHHHHHh
Confidence 0111236889999996431 1122222221 1111 22223445556642 222222222222222222
Q ss_pred CCCCEEEEEeCCCCCCh
Q 014942 225 DKLPILLVLNKKDLIKP 241 (415)
Q Consensus 225 ~~~piilV~NK~Dl~~~ 241 (415)
-..|-|=|+.|+|+...
T Consensus 162 melphVNvlSK~Dl~~~ 178 (290)
T KOG1533|consen 162 MELPHVNVLSKADLLKK 178 (290)
T ss_pred hcccchhhhhHhHHHHh
Confidence 57899999999998643
No 417
>PRK13695 putative NTPase; Provisional
Probab=97.43 E-value=0.0049 Score=54.59 Aligned_cols=87 Identities=16% Similarity=0.225 Sum_probs=46.5
Q ss_pred HhHHHHHHHHhhhcccceEEEEecC---CCCCchH-HHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHHHHHHHhhcCC
Q 014942 181 LDSMMMKNVRSAGINADCIVVLVDA---CKAPERI-DEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTD 256 (415)
Q Consensus 181 l~~~~~~~~~~~~~~aD~ii~VvD~---~~~~~~~-~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~ 256 (415)
+...........+..+++ +++|- .+..... ...+...+ . .+.|++++.||.... ...+.+.....
T Consensus 82 le~~~~~l~~~~l~~~~~--lllDE~~~~e~~~~~~~~~l~~~~-~--~~~~~i~v~h~~~~~------~~~~~i~~~~~ 150 (174)
T PRK13695 82 LERIGIPALERALEEADV--IIIDEIGKMELKSPKFVKAVEEVL-D--SEKPVIATLHRRSVH------PFVQEIKSRPG 150 (174)
T ss_pred HHHHHHHHHHhccCCCCE--EEEECCCcchhhhHHHHHHHHHHH-h--CCCeEEEEECchhhH------HHHHHHhccCC
Confidence 334444445556677887 46773 2222221 22233333 3 678999999985321 12223333333
Q ss_pred CccEEEcccCCCCCHHHHHHHHHhhC
Q 014942 257 VDEVIPVSAKYGHGVEDIRDWILTKL 282 (415)
Q Consensus 257 ~~~i~~vSA~~g~gv~eL~~~L~~~l 282 (415)
..++.+ +.+|-+++...+.+.+
T Consensus 151 -~~i~~~---~~~~r~~~~~~~~~~~ 172 (174)
T PRK13695 151 -GRVYEL---TPENRDSLPFEILNRL 172 (174)
T ss_pred -cEEEEE---cchhhhhHHHHHHHHH
Confidence 245555 5567778877777654
No 418
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.43 E-value=0.0023 Score=64.75 Aligned_cols=72 Identities=18% Similarity=0.179 Sum_probs=38.9
Q ss_pred CeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCC
Q 014942 162 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (415)
Q Consensus 162 ~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~ 240 (415)
++.++++||||..+.....+ ..+ ..+.. .-.+|.+++|+|++.+. ............ - ...=+|+||.|-..
T Consensus 182 ~~DvVIIDTaGr~~~d~~l~-~eL-~~i~~-~~~p~e~lLVvda~tgq-~~~~~a~~f~~~--v-~i~giIlTKlD~~~ 253 (428)
T TIGR00959 182 GFDVVIVDTAGRLQIDEELM-EEL-AAIKE-ILNPDEILLVVDAMTGQ-DAVNTAKTFNER--L-GLTGVVLTKLDGDA 253 (428)
T ss_pred CCCEEEEeCCCccccCHHHH-HHH-HHHHH-hhCCceEEEEEeccchH-HHHHHHHHHHhh--C-CCCEEEEeCccCcc
Confidence 45799999999643222211 111 11222 23578899999987542 222222222212 1 23457799999643
No 419
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.40 E-value=0.0014 Score=53.25 Aligned_cols=95 Identities=23% Similarity=0.220 Sum_probs=55.0
Q ss_pred EEEE-ecCCCCHHHHHHHHh-------CCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHH
Q 014942 118 VAVL-GKPNVGKSTLANQMI-------GQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNV 189 (415)
Q Consensus 118 V~iv-G~~~vGKSSLln~l~-------~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~ 189 (415)
|+++ +..|+||||+.-.|. |.....+...++.. ..++++|||+.... ..
T Consensus 2 i~~~~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~~~------------~D~IIiDtpp~~~~-----------~~ 58 (106)
T cd03111 2 IAFIGAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQFG------------DDYVVVDLGRSLDE-----------VS 58 (106)
T ss_pred EEEECCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCCCC------------CCEEEEeCCCCcCH-----------HH
Confidence 3444 568899999776663 33333333333221 17899999985321 12
Q ss_pred HhhhcccceEEEEecCCCCCchHHHHHHHHhcccC-C-CCCEEEEEeC
Q 014942 190 RSAGINADCIVVLVDACKAPERIDEILEEGVGDHK-D-KLPILLVLNK 235 (415)
Q Consensus 190 ~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~-~-~~piilV~NK 235 (415)
...+..||.++++++.+.........+.+.++... . ..++.+|+|+
T Consensus 59 ~~~l~~aD~vlvvv~~~~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 59 LAALDQADRVFLVTQQDLPSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred HHHHHHcCeEEEEecCChHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 23467899999999876543333333333333321 2 3567788886
No 420
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=97.40 E-value=0.00067 Score=66.26 Aligned_cols=76 Identities=17% Similarity=0.183 Sum_probs=51.1
Q ss_pred EEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhcccceEEEEecCCCCC------------chHHHHHHHHhccc
Q 014942 156 GICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP------------ERIDEILEEGVGDH 223 (415)
Q Consensus 156 ~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~------------~~~~~~l~~~l~~~ 223 (415)
..+..++..+.+||++|.. . ..+.|..++.++++++||+|.++.. ......+..++...
T Consensus 154 ~~f~~~~~~~~~~DvgGq~--~-------~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~ 224 (317)
T cd00066 154 TKFTIKNLKFRMFDVGGQR--S-------ERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSR 224 (317)
T ss_pred EEEEecceEEEEECCCCCc--c-------cchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCc
Confidence 3455677899999999942 2 2244667789999999999998531 11122233333221
Q ss_pred -CCCCCEEEEEeCCCCCC
Q 014942 224 -KDKLPILLVLNKKDLIK 240 (415)
Q Consensus 224 -~~~~piilV~NK~Dl~~ 240 (415)
..+.|+++++||.|+..
T Consensus 225 ~~~~~pill~~NK~D~f~ 242 (317)
T cd00066 225 WFANTSIILFLNKKDLFE 242 (317)
T ss_pred cccCCCEEEEccChHHHH
Confidence 25799999999999864
No 421
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.38 E-value=0.0016 Score=62.00 Aligned_cols=120 Identities=20% Similarity=0.249 Sum_probs=65.9
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCC------ceeeeeCCCCc--------e----EE-eEEEEE-------------eCC
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQ------KLSIVTNKPQT--------T----RH-RILGIC-------------SGP 161 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~------~~~~~~~~~~t--------t----~~-~~~~~~-------------~~~ 161 (415)
+..+++++|++|+||||++..+... ....++..+.. + .. ...... ...
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~ 153 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 153 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcC
Confidence 3359999999999999999887532 22222221110 0 00 000000 112
Q ss_pred CeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCC
Q 014942 162 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (415)
Q Consensus 162 ~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~ 240 (415)
+..++++||||..+.....+.+ +.. ... ....+-+++|+|++.........+... .. -.+-=+++||.|-..
T Consensus 154 ~~D~ViIDt~Gr~~~~~~~l~e-l~~-~~~-~~~~~~~~LVl~a~~~~~d~~~~~~~f-~~---~~~~~~I~TKlDet~ 225 (270)
T PRK06731 154 RVDYILIDTAGKNYRASETVEE-MIE-TMG-QVEPDYICLTLSASMKSKDMIEIITNF-KD---IHIDGIVFTKFDETA 225 (270)
T ss_pred CCCEEEEECCCCCcCCHHHHHH-HHH-HHh-hhCCCeEEEEEcCccCHHHHHHHHHHh-CC---CCCCEEEEEeecCCC
Confidence 5689999999965422222222 211 111 224567899999876544444433332 22 233467899999765
No 422
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.37 E-value=0.0005 Score=62.81 Aligned_cols=116 Identities=13% Similarity=0.144 Sum_probs=67.3
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCcee----eeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHh
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQKLS----IVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~~~----~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~ 191 (415)
|+|.++|..-+||||+-.-...+--+ ....+...|++. ++..-..+.+||.||....-...+.. ..
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~----is~sfinf~v~dfPGQ~~~Fd~s~D~------e~ 97 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDH----ISNSFINFQVWDFPGQMDFFDPSFDY------EM 97 (347)
T ss_pred ceEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhh----hhhhhcceEEeecCCccccCCCccCH------HH
Confidence 46999999999999987655432211 011222222222 22233478999999965321112221 22
Q ss_pred hhcccceEEEEecCCCCCchHH-HHHHHHhcc--cCCCCCEEEEEeCCCCCCh
Q 014942 192 AGINADCIVVLVDACKAPERID-EILEEGVGD--HKDKLPILLVLNKKDLIKP 241 (415)
Q Consensus 192 ~~~~aD~ii~VvD~~~~~~~~~-~~l~~~l~~--~~~~~piilV~NK~Dl~~~ 241 (415)
.++.+-+++||+|+.+...... ....-..+. ..+++.+=+.+.|+|-+..
T Consensus 98 iF~~~gALifvIDaQddy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsd 150 (347)
T KOG3887|consen 98 IFRGVGALIFVIDAQDDYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSD 150 (347)
T ss_pred HHhccCeEEEEEechHHHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCch
Confidence 3678999999999876442222 222212222 2367788899999998753
No 423
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.36 E-value=0.0014 Score=58.22 Aligned_cols=67 Identities=24% Similarity=0.185 Sum_probs=45.4
Q ss_pred CCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCC
Q 014942 161 PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (415)
Q Consensus 161 ~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~ 240 (415)
..+.++++|||+.... .....+..+|.+++++..+.........+.+.++. .+.|+.+|+||+|...
T Consensus 91 ~~~d~viiDtpp~~~~-----------~~~~~l~~aD~vliv~~~~~~~~~~~~~~~~~l~~--~~~~~~vV~N~~~~~~ 157 (179)
T cd03110 91 EGAELIIIDGPPGIGC-----------PVIASLTGADAALLVTEPTPSGLHDLERAVELVRH--FGIPVGVVINKYDLND 157 (179)
T ss_pred cCCCEEEEECcCCCcH-----------HHHHHHHcCCEEEEEecCCcccHHHHHHHHHHHHH--cCCCEEEEEeCCCCCc
Confidence 5678999999964221 12334678999999998875433333344445554 4678899999999754
No 424
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.26 E-value=0.00085 Score=68.68 Aligned_cols=147 Identities=18% Similarity=0.245 Sum_probs=72.6
Q ss_pred ccEEEEEecCCCCHHHHHHHHhCC--------ceeeeeCCCC-c-------e---EE--eEEE----------EEeCCCe
Q 014942 115 SGYVAVLGKPNVGKSTLANQMIGQ--------KLSIVTNKPQ-T-------T---RH--RILG----------ICSGPEY 163 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~~~--------~~~~~~~~~~-t-------t---~~--~~~~----------~~~~~~~ 163 (415)
...++++|++||||||++..|.+. ++..+...+. . + .. .... .....+.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~~L~d~ 335 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALSELRNK 335 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHHHhccCC
Confidence 458999999999999999988632 2333322221 0 0 00 0000 0112345
Q ss_pred eEEEEeCCCCchhhhhhHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChhH
Q 014942 164 QMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE 243 (415)
Q Consensus 164 ~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~ 243 (415)
.++++||+|..+... .+...+ ..... .....-.++|+|++.......+..... . ....--+|+||+|-...-
T Consensus 336 d~VLIDTaGr~~~d~-~~~e~~-~~l~~-~~~p~e~~LVLdAt~~~~~l~~i~~~f-~---~~~~~g~IlTKlDet~~~- 407 (484)
T PRK06995 336 HIVLIDTIGMSQRDR-MVSEQI-AMLHG-AGAPVKRLLLLNATSHGDTLNEVVQAY-R---GPGLAGCILTKLDEAASL- 407 (484)
T ss_pred CeEEeCCCCcChhhH-HHHHHH-HHHhc-cCCCCeeEEEEeCCCcHHHHHHHHHHh-c---cCCCCEEEEeCCCCcccc-
Confidence 789999999644221 111111 11111 111233788999876544333332222 2 223445779999975422
Q ss_pred HHHHHHHHhhcCCCccEEEcccCCCCCH-HHH
Q 014942 244 IAKKLEWYEKFTDVDEVIPVSAKYGHGV-EDI 274 (415)
Q Consensus 244 ~~~~~~~~~~~~~~~~i~~vSA~~g~gv-~eL 274 (415)
-......... + .|+..++ +|++| ++|
T Consensus 408 -G~~l~i~~~~-~-lPI~yvt--~GQ~VPeDL 434 (484)
T PRK06995 408 -GGALDVVIRY-K-LPLHYVS--NGQRVPEDL 434 (484)
T ss_pred -hHHHHHHHHH-C-CCeEEEe--cCCCChhhh
Confidence 1222222221 1 2555543 57777 443
No 425
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=97.25 E-value=0.0075 Score=59.91 Aligned_cols=159 Identities=21% Similarity=0.202 Sum_probs=82.0
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCcee---------------eeeCCCCceEEe----------EEEEE-eCCCeeEEEEe
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQKLS---------------IVTNKPQTTRHR----------ILGIC-SGPEYQMILYD 169 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~~~---------------~~~~~~~tt~~~----------~~~~~-~~~~~~l~liD 169 (415)
..+++||+.-+|||||+.+|...-+- ...+..|.|..+ +...+ ..-..++.++|
T Consensus 18 IYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRLiD 97 (492)
T PF09547_consen 18 IYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRLID 97 (492)
T ss_pred eEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEEEe
Confidence 48999999999999999999632110 001111222111 11111 23346889999
Q ss_pred CCCCchhh-----------------------hhhHhHHHHHHHHhhhc--ccceEEEEecCCCCC------chHHHHHHH
Q 014942 170 TPGIIEKK-----------------------IHMLDSMMMKNVRSAGI--NADCIVVLVDACKAP------ERIDEILEE 218 (415)
Q Consensus 170 tpG~~~~~-----------------------~~~l~~~~~~~~~~~~~--~aD~ii~VvD~~~~~------~~~~~~l~~ 218 (415)
|-|+.-+. |..-...+ ++..+. ..=++++--|.+-+. ....+...+
T Consensus 98 CVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiG---T~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~ 174 (492)
T PF09547_consen 98 CVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIG---TRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIE 174 (492)
T ss_pred ecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhc---ccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHH
Confidence 98873210 11111111 111222 223455555654221 222334444
Q ss_pred HhcccCCCCCEEEEEeCCCCCChhHHHHHHHHHhhcCCCccEEEcccCCCCCHHHHHHHHHhhC
Q 014942 219 GVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKL 282 (415)
Q Consensus 219 ~l~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gv~eL~~~L~~~l 282 (415)
.++. -++|+++++|=.+-... +.......+....+ .+++++++.. ..-+++...|.+.+
T Consensus 175 ELk~--igKPFvillNs~~P~s~-et~~L~~eL~ekY~-vpVlpvnc~~-l~~~DI~~Il~~vL 233 (492)
T PF09547_consen 175 ELKE--IGKPFVILLNSTKPYSE-ETQELAEELEEKYD-VPVLPVNCEQ-LREEDITRILEEVL 233 (492)
T ss_pred HHHH--hCCCEEEEEeCCCCCCH-HHHHHHHHHHHHhC-CcEEEeehHH-cCHHHHHHHHHHHH
Confidence 4555 68999999999875443 33444455555444 4888887753 33344444444443
No 426
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.16 E-value=0.0024 Score=68.57 Aligned_cols=122 Identities=15% Similarity=0.205 Sum_probs=63.3
Q ss_pred ccEEEEEecCCCCHHHHHHHHhCCc--------eeeeeCCCCc---e--------EE--eEEEE----------EeCCCe
Q 014942 115 SGYVAVLGKPNVGKSTLANQMIGQK--------LSIVTNKPQT---T--------RH--RILGI----------CSGPEY 163 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~~~~--------~~~~~~~~~t---t--------~~--~~~~~----------~~~~~~ 163 (415)
...|+++|++||||||++..|.+.. +..++..... . .. ..... -...+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~ 264 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDK 264 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCC
Confidence 3478999999999999999887432 2222111100 0 00 00000 012345
Q ss_pred eEEEEeCCCCchhhhhhHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCC
Q 014942 164 QMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (415)
Q Consensus 164 ~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~ 240 (415)
.++||||||..+.... +...+. .+.. ....+-+++|+|++.......+.+..+ +....-.+-=+|+||.|-..
T Consensus 265 D~VLIDTAGRs~~d~~-l~eel~-~l~~-~~~p~e~~LVLsAt~~~~~l~~i~~~f-~~~~~~~i~glIlTKLDEt~ 337 (767)
T PRK14723 265 HLVLIDTVGMSQRDRN-VSEQIA-MLCG-VGRPVRRLLLLNAASHGDTLNEVVHAY-RHGAGEDVDGCIITKLDEAT 337 (767)
T ss_pred CEEEEeCCCCCccCHH-HHHHHH-HHhc-cCCCCeEEEEECCCCcHHHHHHHHHHH-hhcccCCCCEEEEeccCCCC
Confidence 7999999996442222 222211 1111 234667899999886444333333222 21000023457899999764
No 427
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=97.13 E-value=0.0012 Score=66.55 Aligned_cols=79 Identities=23% Similarity=0.203 Sum_probs=58.8
Q ss_pred HHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHHHHHHHhhcCCCccEEEcccC
Q 014942 187 KNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAK 266 (415)
Q Consensus 187 ~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~ 266 (415)
++.+..+..+|+||.+||+.++.--....+..+.......+..+|++||+||..+.....+.+++.... .+++..||.
T Consensus 166 RQLWRVlErSDivvqIVDARnPllfr~~dLe~Yvke~d~~K~~~LLvNKaDLl~~~qr~aWa~YF~~~n--i~~vf~SA~ 243 (562)
T KOG1424|consen 166 RQLWRVLERSDIVVQIVDARNPLLFRSPDLEDYVKEVDPSKANVLLVNKADLLPPEQRVAWAEYFRQNN--IPVVFFSAL 243 (562)
T ss_pred HHHHHHHhhcceEEEEeecCCccccCChhHHHHHhccccccceEEEEehhhcCCHHHHHHHHHHHHhcC--ceEEEEecc
Confidence 455667899999999999999873333334444444335577899999999999888887777776633 688888987
Q ss_pred C
Q 014942 267 Y 267 (415)
Q Consensus 267 ~ 267 (415)
.
T Consensus 244 ~ 244 (562)
T KOG1424|consen 244 A 244 (562)
T ss_pred c
Confidence 6
No 428
>PRK01889 GTPase RsgA; Reviewed
Probab=97.07 E-value=0.00038 Score=69.04 Aligned_cols=56 Identities=39% Similarity=0.535 Sum_probs=35.3
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCceeeeeC-------CCCceEEeEEEEEeCCCeeEEEEeCCCCc
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTN-------KPQTTRHRILGICSGPEYQMILYDTPGII 174 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~~~~~~~-------~~~tt~~~~~~~~~~~~~~l~liDtpG~~ 174 (415)
..++++|.+|+|||||+|.|++........ ...+|.......+.. ...++||||+.
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~tt~~~~l~~l~~---~~~l~DtpG~~ 258 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHTTTHRELHPLPS---GGLLIDTPGMR 258 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcchhhhccEEEecC---CCeecCCCchh
Confidence 379999999999999999999754321111 112333332223322 23588999973
No 429
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.04 E-value=0.002 Score=45.61 Aligned_cols=44 Identities=25% Similarity=0.362 Sum_probs=24.9
Q ss_pred hcccceEEEEecCCCCC----chHHHHHHHHhcccCCCCCEEEEEeCCC
Q 014942 193 GINADCIVVLVDACKAP----ERIDEILEEGVGDHKDKLPILLVLNKKD 237 (415)
Q Consensus 193 ~~~aD~ii~VvD~~~~~----~~~~~~l~~~l~~~~~~~piilV~NK~D 237 (415)
..-.++++|++|.+... +.+...+ +.++....++|+++|+||+|
T Consensus 11 ~hL~~~ilfi~D~Se~CGysie~Q~~L~-~~ik~~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 11 AHLADAILFIIDPSEQCGYSIEEQLSLF-KEIKPLFPNKPVIVVLNKID 58 (58)
T ss_dssp GGT-SEEEEEE-TT-TTSS-HHHHHHHH-HHHHHHTTTS-EEEEE--TT
T ss_pred HhhcceEEEEEcCCCCCCCCHHHHHHHH-HHHHHHcCCCCEEEEEeccC
Confidence 34678999999998655 2233333 33333335899999999998
No 430
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.03 E-value=0.0059 Score=48.94 Aligned_cols=66 Identities=30% Similarity=0.443 Sum_probs=42.0
Q ss_pred EEEEe-cCCCCHHHHHHHHhC------CceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHH
Q 014942 118 VAVLG-KPNVGKSTLANQMIG------QKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (415)
Q Consensus 118 V~ivG-~~~vGKSSLln~l~~------~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~ 190 (415)
|++.| ..|+||||+.-.|.. .++..+...++ +.++++|+|+..... ..
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~~~~~vl~~d~d~~--------------~d~viiD~p~~~~~~-----------~~ 56 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALARRGKRVLLIDLDPQ--------------YDYIIIDTPPSLGLL-----------TR 56 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHhCCCcEEEEeCCCC--------------CCEEEEeCcCCCCHH-----------HH
Confidence 56676 679999998776642 22222222111 589999999853211 22
Q ss_pred hhhcccceEEEEecCCCC
Q 014942 191 SAGINADCIVVLVDACKA 208 (415)
Q Consensus 191 ~~~~~aD~ii~VvD~~~~ 208 (415)
..+..+|.++++++.+..
T Consensus 57 ~~l~~ad~viv~~~~~~~ 74 (104)
T cd02042 57 NALAAADLVLIPVQPSPL 74 (104)
T ss_pred HHHHHCCEEEEeccCCHH
Confidence 446789999999987643
No 431
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.00 E-value=0.0069 Score=47.13 Aligned_cols=71 Identities=24% Similarity=0.294 Sum_probs=44.1
Q ss_pred EEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhcccc
Q 014942 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINAD 197 (415)
Q Consensus 118 V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD 197 (415)
+++.|.+|+||||+...+...-.. .+.. ...+. .+.++|+|+....... + .......+|
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~-----~g~~----v~~~~----d~iivD~~~~~~~~~~-~-------~~~~~~~~~ 60 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK-----RGKR----VLLID----DYVLIDTPPGLGLLVL-L-------CLLALLAAD 60 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-----CCCe----EEEEC----CEEEEeCCCCccchhh-h-------hhhhhhhCC
Confidence 678899999999999887643111 0000 01111 8899999985432110 0 133467889
Q ss_pred eEEEEecCCCCC
Q 014942 198 CIVVLVDACKAP 209 (415)
Q Consensus 198 ~ii~VvD~~~~~ 209 (415)
.++++++.....
T Consensus 61 ~vi~v~~~~~~~ 72 (99)
T cd01983 61 LVIIVTTPEALA 72 (99)
T ss_pred EEEEecCCchhh
Confidence 999999876544
No 432
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=96.98 E-value=0.0058 Score=53.87 Aligned_cols=109 Identities=20% Similarity=0.177 Sum_probs=59.4
Q ss_pred EEecCCCCHHHHHHHHh------CCceeeeeCCCC-ceEEeEEE--------EEeCCCeeEEEEeCCCCchhhhhhHhHH
Q 014942 120 VLGKPNVGKSTLANQMI------GQKLSIVTNKPQ-TTRHRILG--------ICSGPEYQMILYDTPGIIEKKIHMLDSM 184 (415)
Q Consensus 120 ivG~~~vGKSSLln~l~------~~~~~~~~~~~~-tt~~~~~~--------~~~~~~~~l~liDtpG~~~~~~~~l~~~ 184 (415)
.-+.+|+||||+.-.|. |.+...+...++ ........ ....-...++++|||+....
T Consensus 5 ~~~kgG~GKtt~a~~la~~l~~~g~~vllvD~D~~~~~~~~~~~~~~~~~~~~~~~~~~d~viiD~p~~~~~-------- 76 (179)
T cd02036 5 TSGKGGVGKTTTTANLGTALAQLGYKVVLIDADLGLRNLDLILGLENRVVYTLHDVLAGDYILIDSPAGIER-------- 76 (179)
T ss_pred eeCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCchhhccccccCCcchhhcccCCEEEEECCCCCcH--------
Confidence 34579999999887763 444444433332 11111000 00000117999999974321
Q ss_pred HHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCC
Q 014942 185 MMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (415)
Q Consensus 185 ~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~ 240 (415)
.....+..+|.+|++++...........+.+.+... ......+|+|++|...
T Consensus 77 ---~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~~~~~-~~~~~~iv~N~~~~~~ 128 (179)
T cd02036 77 ---GFITAIAPADEALLVTTPEISSLRDADRVKGLLEAL-GIKVVGVIVNRVRPDM 128 (179)
T ss_pred ---HHHHHHHhCCcEEEEeCCCcchHHHHHHHHHHHHHc-CCceEEEEEeCCcccc
Confidence 122346789999999987654332223333443331 2234678999998653
No 433
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=96.96 E-value=0.0054 Score=60.00 Aligned_cols=94 Identities=19% Similarity=0.113 Sum_probs=68.6
Q ss_pred HHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHHHHHHHhhcCCCccEEEcccCCC
Q 014942 189 VRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYG 268 (415)
Q Consensus 189 ~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g 268 (415)
....+..+|++|-|+|+.++.......+.+.++...+.+.+|+|+|||||++......+...+....+- -.|..|-...
T Consensus 207 LyKViDSSDVvvqVlDARDPmGTrc~~ve~ylkke~phKHli~vLNKvDLVPtwvt~~Wv~~lSkeyPT-iAfHAsi~ns 285 (572)
T KOG2423|consen 207 LYKVIDSSDVVVQVLDARDPMGTRCKHVEEYLKKEKPHKHLIYVLNKVDLVPTWVTAKWVRHLSKEYPT-IAFHASINNS 285 (572)
T ss_pred HHHhhcccceeEEeeeccCCcccccHHHHHHHhhcCCcceeEEEeeccccccHHHHHHHHHHHhhhCcc-eeeehhhcCc
Confidence 445577899999999999988666666777777655778899999999999876666666666554332 1355566666
Q ss_pred CCHHHHHHHHHhhCC
Q 014942 269 HGVEDIRDWILTKLP 283 (415)
Q Consensus 269 ~gv~eL~~~L~~~l~ 283 (415)
.|-..|+..|.+...
T Consensus 286 fGKgalI~llRQf~k 300 (572)
T KOG2423|consen 286 FGKGALIQLLRQFAK 300 (572)
T ss_pred cchhHHHHHHHHHHh
Confidence 777777777776554
No 434
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.82 E-value=0.008 Score=58.78 Aligned_cols=93 Identities=25% Similarity=0.381 Sum_probs=54.6
Q ss_pred CccEEEEEecCCCCHHHHHHHHh------CCceeeeeCCC---C----------ceEEeEEEE----------------E
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMI------GQKLSIVTNKP---Q----------TTRHRILGI----------------C 158 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~------~~~~~~~~~~~---~----------tt~~~~~~~----------------~ 158 (415)
++-.|.++|-.|+||||.+-.|. |.+...+.... + .++.++.+. +
T Consensus 100 kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~f 179 (483)
T KOG0780|consen 100 KPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRF 179 (483)
T ss_pred CCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHH
Confidence 34479999999999999887764 22332221111 0 112222222 2
Q ss_pred eCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhcccceEEEEecCCCCC
Q 014942 159 SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP 209 (415)
Q Consensus 159 ~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~ 209 (415)
..+++.++|+||.|-++... ++-+.+.+ +..+ -..|-+|||+|++-+.
T Consensus 180 Kke~fdvIIvDTSGRh~qe~-sLfeEM~~-v~~a-i~Pd~vi~VmDasiGQ 227 (483)
T KOG0780|consen 180 KKENFDVIIVDTSGRHKQEA-SLFEEMKQ-VSKA-IKPDEIIFVMDASIGQ 227 (483)
T ss_pred HhcCCcEEEEeCCCchhhhH-HHHHHHHH-HHhh-cCCCeEEEEEeccccH
Confidence 34557899999999754332 23233322 2222 3589999999998765
No 435
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.78 E-value=0.0022 Score=71.69 Aligned_cols=119 Identities=22% Similarity=0.271 Sum_probs=65.3
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCceeee-------eCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhh--hhhHh----
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQKLSIV-------TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK--IHMLD---- 182 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~~~~~-------~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~--~~~l~---- 182 (415)
|=-+|+|+||+||||++..- |.++... ...++ |++.- .+-+..-++|||.|-.... .....
T Consensus 126 PWy~viG~pgsGKTtal~~s-gl~Fpl~~~~~~~~~~~~g-T~~cd----wwf~deaVlIDtaGry~~q~s~~~~~~~~W 199 (1188)
T COG3523 126 PWYMVIGPPGSGKTTALLNS-GLQFPLAEQMGALGLAGPG-TRNCD----WWFTDEAVLIDTAGRYITQDSADEVDRAEW 199 (1188)
T ss_pred CceEEecCCCCCcchHHhcc-cccCcchhhhccccccCCC-CcccC----cccccceEEEcCCcceecccCcchhhHHHH
Confidence 35789999999999998753 3333221 11222 33322 1122367899999943211 10111
Q ss_pred HHHHHHHH--hhhcccceEEEEecCCCCCch-----------HHHHHHHHhcccCCCCCEEEEEeCCCCCC
Q 014942 183 SMMMKNVR--SAGINADCIVVLVDACKAPER-----------IDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (415)
Q Consensus 183 ~~~~~~~~--~~~~~aD~ii~VvD~~~~~~~-----------~~~~l~~~l~~~~~~~piilV~NK~Dl~~ 240 (415)
..+....+ ...+-.++||+.+|+.+-... +...+.++...+....|+.|++||.|+..
T Consensus 200 ~~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 200 LGFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLP 270 (1188)
T ss_pred HHHHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccccc
Confidence 11111111 124567999999998643311 11112233333446899999999999975
No 436
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.77 E-value=0.0043 Score=51.54 Aligned_cols=21 Identities=33% Similarity=0.562 Sum_probs=18.8
Q ss_pred EEEEecCCCCHHHHHHHHhCC
Q 014942 118 VAVLGKPNVGKSTLANQMIGQ 138 (415)
Q Consensus 118 V~ivG~~~vGKSSLln~l~~~ 138 (415)
|++.|+||+|||+++..+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 689999999999999998753
No 437
>COG1162 Predicted GTPases [General function prediction only]
Probab=96.75 E-value=0.0091 Score=57.06 Aligned_cols=86 Identities=27% Similarity=0.308 Sum_probs=57.1
Q ss_pred hcccceEEEEecCCCCCch--HHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHH--HHHHHhhcCCCccEEEcccCCC
Q 014942 193 GINADCIVVLVDACKAPER--IDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK--KLEWYEKFTDVDEVIPVSAKYG 268 (415)
Q Consensus 193 ~~~aD~ii~VvD~~~~~~~--~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~--~~~~~~~~~~~~~i~~vSA~~g 268 (415)
..+.|-+++|+.+..+.-. ....++-.... .++.-++|+||+||........ ....+... + .+++.+||+++
T Consensus 77 v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~--~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~-g-y~v~~~s~~~~ 152 (301)
T COG1162 77 VANNDQAIIVVSLVDPDFNTNLLDRYLVLAEA--GGIEPVIVLNKIDLLDDEEAAVKELLREYEDI-G-YPVLFVSAKNG 152 (301)
T ss_pred ccccceEEEEEeccCCCCCHHHHHHHHHHHHH--cCCcEEEEEEccccCcchHHHHHHHHHHHHhC-C-eeEEEecCcCc
Confidence 3457777777777665522 22222223333 6777788899999997665552 33333332 2 47899999999
Q ss_pred CCHHHHHHHHHhhC
Q 014942 269 HGVEDIRDWILTKL 282 (415)
Q Consensus 269 ~gv~eL~~~L~~~l 282 (415)
.|+++|.++|...+
T Consensus 153 ~~~~~l~~~l~~~~ 166 (301)
T COG1162 153 DGLEELAELLAGKI 166 (301)
T ss_pred ccHHHHHHHhcCCe
Confidence 99999999887654
No 438
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=96.73 E-value=0.0037 Score=63.39 Aligned_cols=152 Identities=15% Similarity=0.223 Sum_probs=90.2
Q ss_pred ccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhc
Q 014942 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (415)
..+++|+|..++|||+|+.+++...+.. ...|.-.+.....+......-+.+-|-.|..+. .+..
T Consensus 30 elk~givg~~~sgktalvhr~ltgty~~-~e~~e~~~~kkE~vv~gqs~lLlirdeg~~~~a--------------Qft~ 94 (749)
T KOG0705|consen 30 ELKLGIVGTSQSGKTALVHRYLTGTYTQ-DESPEGGRFKKEVVVDGQSHLLLIRDEGGHPDA--------------QFCQ 94 (749)
T ss_pred hhheeeeecccCCceeeeeeeccceecc-ccCCcCccceeeEEeeccceEeeeecccCCchh--------------hhhh
Confidence 3489999999999999999988776642 223333344444555666666777788773221 1245
Q ss_pred ccceEEEEecCCCCC--chHHHHHHHHhcc-cCCCCCEEEEEeCCCCCC--hhH-HHHHHHHHhhcCCCccEEEcccCCC
Q 014942 195 NADCIVVLVDACKAP--ERIDEILEEGVGD-HKDKLPILLVLNKKDLIK--PGE-IAKKLEWYEKFTDVDEVIPVSAKYG 268 (415)
Q Consensus 195 ~aD~ii~VvD~~~~~--~~~~~~l~~~l~~-~~~~~piilV~NK~Dl~~--~~~-~~~~~~~~~~~~~~~~i~~vSA~~g 268 (415)
.+|++|||+...+-. +.+......+... ....+|+++|+++-=... .+. ..............+.+|+++|.+|
T Consensus 95 wvdavIfvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyG 174 (749)
T KOG0705|consen 95 WVDAVVFVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYG 174 (749)
T ss_pred hccceEEEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhh
Confidence 677888887765433 2222222222111 125678888887743211 111 1111222223334457899999999
Q ss_pred CCHHHHHHHHHhh
Q 014942 269 HGVEDIRDWILTK 281 (415)
Q Consensus 269 ~gv~eL~~~L~~~ 281 (415)
.++...|..+...
T Consensus 175 lnv~rvf~~~~~k 187 (749)
T KOG0705|consen 175 LNVERVFQEVAQK 187 (749)
T ss_pred hhHHHHHHHHHHH
Confidence 9999988877653
No 439
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.69 E-value=0.0018 Score=54.06 Aligned_cols=25 Identities=28% Similarity=0.472 Sum_probs=19.0
Q ss_pred ccEEEEEecCCCCHHHHHHHHhCCc
Q 014942 115 SGYVAVLGKPNVGKSTLANQMIGQK 139 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~~~~ 139 (415)
...+.|.|.+|+|||++++++....
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~ 28 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQL 28 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHh
Confidence 4478999999999999999998653
No 440
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.64 E-value=0.0035 Score=60.37 Aligned_cols=147 Identities=21% Similarity=0.297 Sum_probs=76.9
Q ss_pred CccEEEEEecCCCCHHHHHHHHhC------CceeeeeCCC----------------Cce-------EEeEEEE------E
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIG------QKLSIVTNKP----------------QTT-------RHRILGI------C 158 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~------~~~~~~~~~~----------------~tt-------~~~~~~~------~ 158 (415)
++..++++|-.|+||||.+-.|.. .++.+..... +.. .++.... -
T Consensus 138 ~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~A 217 (340)
T COG0552 138 KPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQAA 217 (340)
T ss_pred CcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHHH
Confidence 455899999999999998887742 2221110000 000 0000000 0
Q ss_pred eCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhcccce-----EEEEecCCCCCchH--HHHHHHHhcccCCCCCEEE
Q 014942 159 SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADC-----IVVLVDACKAPERI--DEILEEGVGDHKDKLPILL 231 (415)
Q Consensus 159 ~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD~-----ii~VvD~~~~~~~~--~~~l~~~l~~~~~~~piil 231 (415)
...++.++++||+|-.+...+.|.+ + +.+.+.+...+. +++++|++.+.... .+.+.+... . -=+
T Consensus 218 kar~~DvvliDTAGRLhnk~nLM~E-L-~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F~eav~-----l-~Gi 289 (340)
T COG0552 218 KARGIDVVLIDTAGRLHNKKNLMDE-L-KKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIFNEAVG-----L-DGI 289 (340)
T ss_pred HHcCCCEEEEeCcccccCchhHHHH-H-HHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHHHHhcC-----C-ceE
Confidence 1234589999999977655444432 2 223333443333 88888998775332 223333322 1 247
Q ss_pred EEeCCCCCChhH-HHHHHHHHhhcCCCccEEEcccCCCCCHHHHH
Q 014942 232 VLNKKDLIKPGE-IAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIR 275 (415)
Q Consensus 232 V~NK~Dl~~~~~-~~~~~~~~~~~~~~~~i~~vSA~~g~gv~eL~ 275 (415)
+++|+|-..... +..+...+ + .|+..+. -|+++++|.
T Consensus 290 IlTKlDgtAKGG~il~I~~~l----~-~PI~fiG--vGE~~~DL~ 327 (340)
T COG0552 290 ILTKLDGTAKGGIILSIAYEL----G-IPIKFIG--VGEGYDDLR 327 (340)
T ss_pred EEEecccCCCcceeeeHHHHh----C-CCEEEEe--CCCChhhcc
Confidence 899999653322 11222222 1 2555553 477887764
No 441
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.56 E-value=0.0015 Score=58.76 Aligned_cols=41 Identities=17% Similarity=0.154 Sum_probs=29.9
Q ss_pred ccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEE
Q 014942 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRIL 155 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~ 155 (415)
...|+|+|++|||||||+++|+..........+.|||.+-.
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~r~ 44 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAPRP 44 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCCCC
Confidence 34799999999999999999987643223345667765543
No 442
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.40 E-value=0.0024 Score=59.12 Aligned_cols=24 Identities=42% Similarity=0.666 Sum_probs=21.8
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCc
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~ 139 (415)
-.|+|+|++|||||||+|.+.|-.
T Consensus 30 EfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 30 EFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 389999999999999999998854
No 443
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.38 E-value=0.016 Score=55.57 Aligned_cols=112 Identities=11% Similarity=0.157 Sum_probs=64.5
Q ss_pred CCCCCccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhh-h----------
Q 014942 110 HPNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK-I---------- 178 (415)
Q Consensus 110 ~~~~~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~-~---------- 178 (415)
++..|.+.++|+|++|.|||+++++|....... .+ +. .....++.+.+|.-.... +
T Consensus 56 P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~-~d-~~-----------~~~~PVv~vq~P~~p~~~~~Y~~IL~~lga 122 (302)
T PF05621_consen 56 PKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQ-SD-ED-----------AERIPVVYVQMPPEPDERRFYSAILEALGA 122 (302)
T ss_pred CcccCCCceEEecCCCCcHHHHHHHHHHHCCCC-CC-CC-----------CccccEEEEecCCCCChHHHHHHHHHHhCc
Confidence 355677899999999999999999998654321 11 11 112367777777532211 0
Q ss_pred -----hhHhHHHHHHHHhhhcccceEEEEecCCCCC----chHHHHHHHHhccc--CCCCCEEEEEeC
Q 014942 179 -----HMLDSMMMKNVRSAGINADCIVVLVDACKAP----ERIDEILEEGVGDH--KDKLPILLVLNK 235 (415)
Q Consensus 179 -----~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~----~~~~~~l~~~l~~~--~~~~piilV~NK 235 (415)
... ......+...++.+.+=++++|--+.. ......+++.++.+ ..++|+|.|+++
T Consensus 123 P~~~~~~~-~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 123 PYRPRDRV-AKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred ccCCCCCH-HHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence 011 112233445677788888888864432 22223333333332 157888888765
No 444
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.31 E-value=0.024 Score=47.22 Aligned_cols=24 Identities=29% Similarity=0.499 Sum_probs=21.0
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCc
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~ 139 (415)
..+.|.|++|+|||+|++.+...-
T Consensus 20 ~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999997643
No 445
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=96.25 E-value=0.028 Score=49.43 Aligned_cols=107 Identities=18% Similarity=0.170 Sum_probs=59.8
Q ss_pred EEEecCCCCHHHHHHHHh------CCceeeeeCCCCce-EEe-EEE---------E---EeCCCeeEEEEeCCCCchhhh
Q 014942 119 AVLGKPNVGKSTLANQMI------GQKLSIVTNKPQTT-RHR-ILG---------I---CSGPEYQMILYDTPGIIEKKI 178 (415)
Q Consensus 119 ~ivG~~~vGKSSLln~l~------~~~~~~~~~~~~tt-~~~-~~~---------~---~~~~~~~l~liDtpG~~~~~~ 178 (415)
+.-+.+|+||||+.-.|. |.+...+...++.+ ... ... . ....++.++++|||+.....
T Consensus 4 v~s~kgG~GKTt~a~~LA~~la~~g~~vllvD~D~q~~~~~~~~~~~~~~~~l~~~~~~~~~~~yD~VIiD~pp~~~~~- 82 (169)
T cd02037 4 VMSGKGGVGKSTVAVNLALALAKLGYKVGLLDADIYGPSIPKMWRGPMKMGAIKQFLTDVDWGELDYLVIDMPPGTGDE- 82 (169)
T ss_pred EecCCCcCChhHHHHHHHHHHHHcCCcEEEEeCCCCCCCchHHHhCcchHHHHHHHHHHhhcCCCCEEEEeCCCCCcHH-
Confidence 344678999999876653 45554443333221 110 000 0 11246789999999853211
Q ss_pred hhHhHHHHHHHHhh--hcccceEEEEecCCCCCchHHHHHHHHhcccCCCCC-EEEEEeCCCC
Q 014942 179 HMLDSMMMKNVRSA--GINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKDL 238 (415)
Q Consensus 179 ~~l~~~~~~~~~~~--~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~p-iilV~NK~Dl 238 (415)
.... +..+|.+++|+............+.+.++. .+.+ .-+|+|+++.
T Consensus 83 ----------~~~~~~~~~ad~viiV~~p~~~s~~~~~~~~~~l~~--~~~~~~gvv~N~~~~ 133 (169)
T cd02037 83 ----------HLTLAQSLPIDGAVIVTTPQEVALDDVRKAIDMFKK--VNIPILGVVENMSYF 133 (169)
T ss_pred ----------HHHHHhccCCCeEEEEECCchhhHHHHHHHHHHHHh--cCCCeEEEEEcCCcc
Confidence 1111 257899999997764433333344445554 3445 4578999885
No 446
>PRK14738 gmk guanylate kinase; Provisional
Probab=96.24 E-value=0.0032 Score=57.48 Aligned_cols=39 Identities=31% Similarity=0.328 Sum_probs=26.7
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEE
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRH 152 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~ 152 (415)
+...|+|+|++|||||||+++|...........+.||+.
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~~~~~~~~~~~ttr~ 50 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRERKLPFHFVVTATTRP 50 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhcCCcccccccccCCC
Confidence 444788999999999999999975432222334445543
No 447
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.21 E-value=0.0042 Score=51.18 Aligned_cols=22 Identities=36% Similarity=0.626 Sum_probs=19.8
Q ss_pred EEEEEecCCCCHHHHHHHHhCC
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQ 138 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~ 138 (415)
.|+|.|.|||||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999764
No 448
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=96.21 E-value=0.035 Score=52.63 Aligned_cols=19 Identities=42% Similarity=0.648 Sum_probs=16.0
Q ss_pred EEEEEecCCCCHHHHHHHH
Q 014942 117 YVAVLGKPNVGKSTLANQM 135 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l 135 (415)
.|+|.|..||||||+.-.|
T Consensus 2 ~i~v~gKGGvGKTT~a~nL 20 (267)
T cd02032 2 VLAVYGKGGIGKSTTSSNL 20 (267)
T ss_pred EEEEecCCCCCHHHHHHHH
Confidence 5888999999999976654
No 449
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=96.17 E-value=0.0026 Score=56.33 Aligned_cols=51 Identities=22% Similarity=0.276 Sum_probs=33.5
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEe
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYD 169 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liD 169 (415)
.-+++.|++|||||||+.+|+... ...-....|||.+-.+... |..+.|++
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~-~l~~SVS~TTR~pR~gEv~--G~dY~Fvs 55 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDD-KLRFSVSATTRKPRPGEVD--GVDYFFVT 55 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhc-CeEEEEEeccCCCCCCCcC--CceeEeCC
Confidence 468999999999999999998776 3333444566655444333 33444443
No 450
>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=96.13 E-value=0.0032 Score=66.97 Aligned_cols=96 Identities=19% Similarity=0.258 Sum_probs=59.7
Q ss_pred CCCccEEEEEecCCCCHHHHHHHHhCCceee-----eeCCCCce-----------------EEe----------------
Q 014942 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKLSI-----VTNKPQTT-----------------RHR---------------- 153 (415)
Q Consensus 112 ~~~~~~V~ivG~~~vGKSSLln~l~~~~~~~-----~~~~~~tt-----------------~~~---------------- 153 (415)
....|.|+++|..++||||.++.++|..+.. ++..|-.- ...
T Consensus 26 ~i~lP~I~vvG~QSsGKSSvLE~lvG~~flpRg~givTRrPlvlqL~~~~~~~~e~~~f~~h~~~~~~~D~~~vrkeI~~ 105 (657)
T KOG0446|consen 26 FIPLPQIVVVGGQSSGKSSVLESLVGFVFLPRGVGIVTRRPLILQLSIVAGGDEEEASFLTHDKKKRFTDFEEVRKEIRS 105 (657)
T ss_pred cccCCceEEecCCCCcchhHHHHhhccccccccccceecccceeecccccCCcccchhccccccccccCCHHHHHHHHHh
Confidence 3456799999999999999999999976542 11111000 000
Q ss_pred -----------------EEEEEeCCCeeEEEEeCCCCchh----hhhhHhHHHHHHHHhhhcccceEEEEecCCC
Q 014942 154 -----------------ILGICSGPEYQMILYDTPGIIEK----KIHMLDSMMMKNVRSAGINADCIVVLVDACK 207 (415)
Q Consensus 154 -----------------~~~~~~~~~~~l~liDtpG~~~~----~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~ 207 (415)
...+....-..+.++|.||+... ....+..........++....++++.+...+
T Consensus 106 et~~~~g~~kgiS~~pI~L~i~s~~v~~lTLvDlPG~tkvpv~dqp~di~~qI~~mi~~yi~~~~~iILav~~an 180 (657)
T KOG0446|consen 106 ETDRITGSNKGISPVPITLKIFSALVANLTLVDLPGLTKVPVADQPDDIEEEIKSMIEEYIEKPNRIILAVTPAN 180 (657)
T ss_pred hHHHhcCCCCCcCCCCceeeecCCCCchhhhcCCCCCcccccCCCCccHHHHHHHHHHHhccccchhhhhccchh
Confidence 00011111236789999998542 2334555566667778888888888877643
No 451
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.06 E-value=0.0054 Score=54.42 Aligned_cols=54 Identities=20% Similarity=0.259 Sum_probs=32.8
Q ss_pred EEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCC
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPG 172 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG 172 (415)
.|+|+|++|+|||||++.|.+...........+|+.+..+. ..+..+.+++...
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~~~g~--~~~~~~~~~~~~~ 56 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPRPGE--VDGVDYFFVSKEE 56 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccCccccccccceeeCCCCCC--cCCcEEEEecHHH
Confidence 68999999999999999998854322223333444433222 1233555555433
No 452
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.01 E-value=0.015 Score=58.03 Aligned_cols=90 Identities=22% Similarity=0.393 Sum_probs=51.1
Q ss_pred ccEEEEEecCCCCHHHHHHHHh------CCceeeeeCCC---Cc----------eEEeEEEE----------------Ee
Q 014942 115 SGYVAVLGKPNVGKSTLANQMI------GQKLSIVTNKP---QT----------TRHRILGI----------------CS 159 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~------~~~~~~~~~~~---~t----------t~~~~~~~----------------~~ 159 (415)
+..|.++|--|+||||.+-.|. +.+...++... .. +...+... ..
T Consensus 100 P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~ak 179 (451)
T COG0541 100 PTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEKAK 179 (451)
T ss_pred CeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHHHH
Confidence 3479999999999999876663 23333222111 00 00000000 11
Q ss_pred CCCeeEEEEeCCCCchhhhhhHhHHHHHHHH--hhhcccceEEEEecCCCCC
Q 014942 160 GPEYQMILYDTPGIIEKKIHMLDSMMMKNVR--SAGINADCIVVLVDACKAP 209 (415)
Q Consensus 160 ~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~--~~~~~aD~ii~VvD~~~~~ 209 (415)
...+.++|+||+|-.+-. +.++.... ...-+.|=+++|+|+.-+.
T Consensus 180 ~~~~DvvIvDTAGRl~id-----e~Lm~El~~Ik~~~~P~E~llVvDam~GQ 226 (451)
T COG0541 180 EEGYDVVIVDTAGRLHID-----EELMDELKEIKEVINPDETLLVVDAMIGQ 226 (451)
T ss_pred HcCCCEEEEeCCCccccc-----HHHHHHHHHHHhhcCCCeEEEEEecccch
Confidence 233589999999964432 22222222 2245789999999998765
No 453
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=95.99 E-value=0.03 Score=55.43 Aligned_cols=24 Identities=42% Similarity=0.549 Sum_probs=20.3
Q ss_pred CCccEEEEEecCCCCHHHHHHHHh
Q 014942 113 HKSGYVAVLGKPNVGKSTLANQMI 136 (415)
Q Consensus 113 ~~~~~V~ivG~~~vGKSSLln~l~ 136 (415)
.+.++|+|+|+.++|||||...|.
T Consensus 71 ~~~~~vmvvG~vDSGKSTLt~~La 94 (398)
T COG1341 71 GKVGVVMVVGPVDSGKSTLTTYLA 94 (398)
T ss_pred cCCcEEEEECCcCcCHHHHHHHHH
Confidence 356799999999999999876664
No 454
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=95.98 E-value=0.0067 Score=43.97 Aligned_cols=20 Identities=30% Similarity=0.400 Sum_probs=18.6
Q ss_pred EEEEEecCCCCHHHHHHHHh
Q 014942 117 YVAVLGKPNVGKSTLANQMI 136 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~ 136 (415)
..+|.|+.|+|||||++++.
T Consensus 25 ~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999975
No 455
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.97 E-value=0.0058 Score=52.00 Aligned_cols=53 Identities=21% Similarity=0.194 Sum_probs=31.5
Q ss_pred EEEEecCCCCHHHHHHHHhCCce-eeeeCCCCceEEeEEEEEeCCCeeEEEEeCCC
Q 014942 118 VAVLGKPNVGKSTLANQMIGQKL-SIVTNKPQTTRHRILGICSGPEYQMILYDTPG 172 (415)
Q Consensus 118 V~ivG~~~vGKSSLln~l~~~~~-~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG 172 (415)
|+|+|++|+|||||++.|..... ......+.+|+.+..+. .++..+.++|...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~~~~~~v~~tTr~p~~~e--~~g~~~~~v~~~~ 55 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGE--VDGVDYHFVSKEE 55 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCccceecccccccCCCCCc--cCCceeEEeCHHH
Confidence 78999999999999999987521 11123333454432221 2344556665433
No 456
>PRK04195 replication factor C large subunit; Provisional
Probab=95.97 E-value=0.09 Score=54.46 Aligned_cols=24 Identities=29% Similarity=0.558 Sum_probs=20.9
Q ss_pred ccEEEEEecCCCCHHHHHHHHhCC
Q 014942 115 SGYVAVLGKPNVGKSTLANQMIGQ 138 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~~~ 138 (415)
...++|.|+||+||||++++|...
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~e 62 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALAND 62 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 347999999999999999999754
No 457
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=95.96 E-value=0.041 Score=51.21 Aligned_cols=66 Identities=9% Similarity=0.023 Sum_probs=39.9
Q ss_pred CCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhcccceEEEEecCCCCCc-h---HHHHHHHHhcccCCCCCEEEEEeCC
Q 014942 161 PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPE-R---IDEILEEGVGDHKDKLPILLVLNKK 236 (415)
Q Consensus 161 ~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~-~---~~~~l~~~l~~~~~~~piilV~NK~ 236 (415)
+++.++|+||||... .....++..||.+|+.+..+...- . ....+.+..+....+.|..+++|.+
T Consensus 82 ~~yD~iiID~pp~~~-----------~~~~~al~~aD~vliP~~ps~~d~~~~~~~~~~v~~~~~~~~~~l~~~iv~~~~ 150 (231)
T PRK13849 82 QGFDYALADTHGGSS-----------ELNNTIIASSNLLLIPTMLTPLDIDEALSTYRYVIELLLSENLAIPTAILRQRV 150 (231)
T ss_pred CCCCEEEEeCCCCcc-----------HHHHHHHHHCCEEEEeccCcHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEec
Confidence 457899999999532 113344678999998876643221 1 1112222222223567888999998
Q ss_pred C
Q 014942 237 D 237 (415)
Q Consensus 237 D 237 (415)
+
T Consensus 151 ~ 151 (231)
T PRK13849 151 P 151 (231)
T ss_pred c
Confidence 7
No 458
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=95.95 E-value=0.047 Score=52.03 Aligned_cols=153 Identities=15% Similarity=0.112 Sum_probs=69.8
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCc-hhhhhhHhHHHHHHHHhhhc
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGII-EKKIHMLDSMMMKNVRSAGI 194 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~-~~~~~~l~~~~~~~~~~~~~ 194 (415)
|-|++.|.|++||||+.+.|...-.. .+.. ..++..+... ++.-.+. .......+..+...+...+.
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~-----~~~~----v~~i~~~~~~---~~~~~y~~~~~Ek~~R~~l~s~v~r~ls 69 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEE-----KGKE----VVIISDDSLG---IDRNDYADSKKEKEARGSLKSAVERALS 69 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHH-----TT------EEEE-THHHH----TTSSS--GGGHHHHHHHHHHHHHHHHT
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHh-----cCCE----EEEEcccccc---cchhhhhchhhhHHHHHHHHHHHHHhhc
Confidence 46899999999999999998753111 0000 0011111101 1111110 01122334445555555555
Q ss_pred ccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCC---------------ChhHHHHHHHHHhhcCC---
Q 014942 195 NADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI---------------KPGEIAKKLEWYEKFTD--- 256 (415)
Q Consensus 195 ~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~---------------~~~~~~~~~~~~~~~~~--- 256 (415)
.-+ |+++|...-.......+..+.+. .+.+..+|.-.+++. +.+.+..+...++.-..
T Consensus 70 ~~~--iVI~Dd~nYiKg~RYelyclAr~--~~~~~c~i~~~~~~e~~~~~N~~R~~~~~~~~e~i~~m~~RfE~P~~~nr 145 (270)
T PF08433_consen 70 KDT--IVILDDNNYIKGMRYELYCLARA--YGTTFCVIYCDCPLETCLQRNSKRPEPERYPEETIDDMIQRFEEPDPKNR 145 (270)
T ss_dssp T-S--EEEE-S---SHHHHHHHHHHHHH--TT-EEEEEEEE--HHHHHHHHHHTT-S--S-HHHHHHHHHH---TTSS-G
T ss_pred cCe--EEEEeCCchHHHHHHHHHHHHHH--cCCCEEEEEECCCHHHHHHhhhccCCCCCCCHHHHHHHHHHhcCCCCCCC
Confidence 443 44578877677777777777777 778888888887752 11222333333332211
Q ss_pred -CccEEEcc-cCCCCCHHHHHHHHHhhCCC
Q 014942 257 -VDEVIPVS-AKYGHGVEDIRDWILTKLPL 284 (415)
Q Consensus 257 -~~~i~~vS-A~~g~gv~eL~~~L~~~l~~ 284 (415)
-.|.|.+. .-....++++.+.|...-+.
T Consensus 146 WD~plf~i~~~~~~~~~~~I~~~l~~~~~~ 175 (270)
T PF08433_consen 146 WDSPLFTIDSSDEELPLEEIWNALFENKPL 175 (270)
T ss_dssp GGS-SEEEE-TTS---HHHHHHHHHHHHTS
T ss_pred ccCCeEEEecCCCCCCHHHHHHHHHhcCCC
Confidence 11445554 55666788899888654443
No 459
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=95.95 E-value=0.044 Score=50.53 Aligned_cols=101 Identities=7% Similarity=0.089 Sum_probs=55.9
Q ss_pred CeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhcccceEEEEecCCCCC----chHHHHHHHHhcccCCCCCEEEEEeCCC
Q 014942 162 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP----ERIDEILEEGVGDHKDKLPILLVLNKKD 237 (415)
Q Consensus 162 ~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~----~~~~~~l~~~l~~~~~~~piilV~NK~D 237 (415)
++.++|+||+|.... + ...++..+|++|+=+-.+... .....++.+..+...+.+|.-++.|++.
T Consensus 83 ~~d~VlvDleG~as~--------~---~~~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~~~~ip~~Vl~Tr~~ 151 (231)
T PF07015_consen 83 GFDFVLVDLEGGASE--------L---NDYAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEKAERRDIPAAVLFTRVP 151 (231)
T ss_pred CCCEEEEeCCCCCch--------h---HHHHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHHhhCCCCCeeEEEecCC
Confidence 457899999995221 1 222366899888754333211 1122344444444447899999999997
Q ss_pred CCChhHHHHHHHHHhhcCCCccEEEcccCCCCCHHHHHH
Q 014942 238 LIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRD 276 (415)
Q Consensus 238 l~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gv~eL~~ 276 (415)
-............+.. ..|+|.+.-.......+++.
T Consensus 152 ~~~~~~~~~~~~e~~~---~lpvl~t~l~eR~Af~~m~~ 187 (231)
T PF07015_consen 152 AARLTRAQRIISEQLE---SLPVLDTELHERDAFRAMFS 187 (231)
T ss_pred cchhhHHHHHHHHHHh---cCCccccccccHHHHHHHHH
Confidence 4422222222222222 24777777766655555554
No 460
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=95.93 E-value=0.007 Score=50.99 Aligned_cols=25 Identities=36% Similarity=0.457 Sum_probs=22.3
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCce
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQKL 140 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~~ 140 (415)
-.++|+|+.|+|||||++.|.|...
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g~~~ 36 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAGLLP 36 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTSSH
T ss_pred CEEEEEccCCCccccceeeeccccc
Confidence 3799999999999999999998653
No 461
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.83 E-value=0.0067 Score=55.84 Aligned_cols=24 Identities=42% Similarity=0.613 Sum_probs=21.2
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCc
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~ 139 (415)
-.|+|+|++|+|||||+|-+-+-.
T Consensus 32 e~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 32 EFVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred CEEEEECCCCCCHHHHHHHHhccc
Confidence 389999999999999999987643
No 462
>PHA02518 ParA-like protein; Provisional
Probab=95.81 E-value=0.089 Score=47.64 Aligned_cols=66 Identities=17% Similarity=0.199 Sum_probs=37.3
Q ss_pred CeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhcccceEEEEecCCCCC-c---hHHHHHHHHhcccCCCCC-EEEEEeCC
Q 014942 162 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP-E---RIDEILEEGVGDHKDKLP-ILLVLNKK 236 (415)
Q Consensus 162 ~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~-~---~~~~~l~~~l~~~~~~~p-iilV~NK~ 236 (415)
.+.++++||||... .....++..||.+|+++..+... . .....+.. ......+.| ..++.|+.
T Consensus 76 ~~d~viiD~p~~~~-----------~~~~~~l~~aD~viip~~ps~~~~~~~~~~~~~~~~-~~~~~~~~~~~~iv~n~~ 143 (211)
T PHA02518 76 GYDYVVVDGAPQDS-----------ELARAALRIADMVLIPVQPSPFDIWAAPDLVELIKA-RQEVTDGLPKFAFIISRA 143 (211)
T ss_pred cCCEEEEeCCCCcc-----------HHHHHHHHHCCEEEEEeCCChhhHHHHHHHHHHHHH-HHhhCCCCceEEEEEecc
Confidence 45899999998421 11344578999999999876432 1 12222222 111113444 45677877
Q ss_pred CCC
Q 014942 237 DLI 239 (415)
Q Consensus 237 Dl~ 239 (415)
+..
T Consensus 144 ~~~ 146 (211)
T PHA02518 144 IKN 146 (211)
T ss_pred CCc
Confidence 643
No 463
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=95.78 E-value=0.0069 Score=53.54 Aligned_cols=24 Identities=46% Similarity=0.621 Sum_probs=21.6
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCc
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~ 139 (415)
-+|+|+|++|+|||||+|-+.|-.
T Consensus 26 e~vAi~GpSGaGKSTLLnLIAGF~ 49 (231)
T COG3840 26 EIVAILGPSGAGKSTLLNLIAGFE 49 (231)
T ss_pred cEEEEECCCCccHHHHHHHHHhcc
Confidence 389999999999999999998754
No 464
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=95.73 E-value=0.073 Score=52.20 Aligned_cols=77 Identities=17% Similarity=0.178 Sum_probs=50.6
Q ss_pred EEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhcccceEEEEecCCCCCc-----hHH-------HHHHHHhcc
Q 014942 155 LGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPE-----RID-------EILEEGVGD 222 (415)
Q Consensus 155 ~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~-----~~~-------~~l~~~l~~ 222 (415)
...+...+..+.++|++|...+ .+.|...+.++++||||++.++-.+ ... ..+..++..
T Consensus 187 e~~F~~k~~~f~~~DvGGQRse---------RrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~ 257 (354)
T KOG0082|consen 187 EVEFTIKGLKFRMFDVGGQRSE---------RKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNN 257 (354)
T ss_pred EEEEEeCCCceEEEeCCCcHHH---------hhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcC
Confidence 3446677789999999994322 2446667899999999999874221 111 112222221
Q ss_pred -cCCCCCEEEEEeCCCCCC
Q 014942 223 -HKDKLPILLVLNKKDLIK 240 (415)
Q Consensus 223 -~~~~~piilV~NK~Dl~~ 240 (415)
.-.+.++||++||.|+..
T Consensus 258 ~~F~~tsiiLFLNK~DLFe 276 (354)
T KOG0082|consen 258 KWFANTSIILFLNKKDLFE 276 (354)
T ss_pred cccccCcEEEEeecHHHHH
Confidence 126789999999999864
No 465
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.63 E-value=0.23 Score=46.60 Aligned_cols=20 Identities=35% Similarity=0.662 Sum_probs=18.2
Q ss_pred EEEEecCCCCHHHHHHHHhC
Q 014942 118 VAVLGKPNVGKSTLANQMIG 137 (415)
Q Consensus 118 V~ivG~~~vGKSSLln~l~~ 137 (415)
|+++|.||+||||+...|..
T Consensus 2 Ivl~G~pGSGKST~a~~La~ 21 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAK 21 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 78999999999999999863
No 466
>PF05729 NACHT: NACHT domain
Probab=95.61 E-value=0.035 Score=47.88 Aligned_cols=22 Identities=36% Similarity=0.542 Sum_probs=19.4
Q ss_pred EEEEEecCCCCHHHHHHHHhCC
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQ 138 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~ 138 (415)
.++|.|.+|+||||++..++..
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~ 23 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQ 23 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHH
Confidence 5889999999999999998753
No 467
>PRK00300 gmk guanylate kinase; Provisional
Probab=95.60 E-value=0.012 Score=53.32 Aligned_cols=24 Identities=25% Similarity=0.437 Sum_probs=21.4
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCc
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~ 139 (415)
..|+|+|++|+|||||++.|.+..
T Consensus 6 ~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 6 LLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 479999999999999999998753
No 468
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.56 E-value=0.011 Score=50.20 Aligned_cols=20 Identities=40% Similarity=0.662 Sum_probs=18.5
Q ss_pred EEEEecCCCCHHHHHHHHhC
Q 014942 118 VAVLGKPNVGKSTLANQMIG 137 (415)
Q Consensus 118 V~ivG~~~vGKSSLln~l~~ 137 (415)
|+++|+||+|||||+..|..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999973
No 469
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.54 E-value=0.011 Score=43.88 Aligned_cols=21 Identities=38% Similarity=0.596 Sum_probs=19.0
Q ss_pred EEEEecCCCCHHHHHHHHhCC
Q 014942 118 VAVLGKPNVGKSTLANQMIGQ 138 (415)
Q Consensus 118 V~ivG~~~vGKSSLln~l~~~ 138 (415)
|++.|.+|+||||+.++|...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998754
No 470
>PRK07261 topology modulation protein; Provisional
Probab=95.54 E-value=0.0098 Score=52.62 Aligned_cols=21 Identities=38% Similarity=0.577 Sum_probs=19.4
Q ss_pred EEEEEecCCCCHHHHHHHHhC
Q 014942 117 YVAVLGKPNVGKSTLANQMIG 137 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~ 137 (415)
+|+|+|.+|+|||||...|..
T Consensus 2 ri~i~G~~GsGKSTla~~l~~ 22 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQ 22 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999999864
No 471
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=95.50 E-value=0.008 Score=52.51 Aligned_cols=22 Identities=27% Similarity=0.590 Sum_probs=17.6
Q ss_pred EEEEEecCCCCHHHHHHHHhCC
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQ 138 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~ 138 (415)
||+|+|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 6999999999999999999755
No 472
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=95.49 E-value=0.012 Score=52.63 Aligned_cols=73 Identities=26% Similarity=0.261 Sum_probs=44.0
Q ss_pred eeEEEEeCCCCchhhhhhHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCC-CCEEEEEeCCCCCCh
Q 014942 163 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDK-LPILLVLNKKDLIKP 241 (415)
Q Consensus 163 ~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~-~piilV~NK~Dl~~~ 241 (415)
+.++++|||+..... +...+..+|.+|++++.+...-.....+.+.++..... ..+.+|+||++....
T Consensus 95 yD~iiiD~~~~~~~~-----------~~~~l~~ad~viv~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~vv~N~v~~~~~ 163 (195)
T PF01656_consen 95 YDYIIIDTPPGLSDP-----------VRNALAAADYVIVPIEPDPSSIEGAERLIELLKRLGKKLKIIGVVINRVDPGNE 163 (195)
T ss_dssp SSEEEEEECSSSSHH-----------HHHHHHTSSEEEEEEESSHHHHHHHHHHHHHHHHHTHTEEEEEEEEEEETSCCH
T ss_pred ccceeecccccccHH-----------HHHHHHhCceeeeecCCcHHHHHHHHHHHHHHHHhccccceEEEEEeeeCCCcc
Confidence 789999999853321 33446799999999987642222222233333331111 246789999987755
Q ss_pred hHHHH
Q 014942 242 GEIAK 246 (415)
Q Consensus 242 ~~~~~ 246 (415)
.....
T Consensus 164 ~~~~~ 168 (195)
T PF01656_consen 164 SKLQE 168 (195)
T ss_dssp HHHHH
T ss_pred chHHH
Confidence 54443
No 473
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.46 E-value=0.032 Score=56.06 Aligned_cols=125 Identities=19% Similarity=0.314 Sum_probs=69.3
Q ss_pred CCCccEEEEEecCCCCHHHHHHHHh----CCceeeeeCCCCceEE------------------eEEEE------------
Q 014942 112 NHKSGYVAVLGKPNVGKSTLANQMI----GQKLSIVTNKPQTTRH------------------RILGI------------ 157 (415)
Q Consensus 112 ~~~~~~V~ivG~~~vGKSSLln~l~----~~~~~~~~~~~~tt~~------------------~~~~~------------ 157 (415)
..++..|+++|-.||||||-+..+. ..++...-.--.|.|. .....
T Consensus 375 ~krPYVi~fvGVNGVGKSTNLAKIayWLlqNkfrVLIAACDTFRsGAvEQLrtHv~rl~~l~~~~v~lfekGYgkd~a~v 454 (587)
T KOG0781|consen 375 RKRPYVISFVGVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTFRSGAVEQLRTHVERLSALHGTMVELFEKGYGKDAAGV 454 (587)
T ss_pred cCCCeEEEEEeecCccccchHHHHHHHHHhCCceEEEEeccchhhhHHHHHHHHHHHHHHhccchhHHHhhhcCCChHHH
Confidence 3366689999999999999887763 4443321000000000 00000
Q ss_pred -------EeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhcccceEEEEecCCCCCchHH--HHHHHHhcccCCCCC
Q 014942 158 -------CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERID--EILEEGVGDHKDKLP 228 (415)
Q Consensus 158 -------~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~--~~l~~~l~~~~~~~p 228 (415)
-...+..++++||+|-.+.....|.. +.+. .-....|.|+||-.+--+....+ ..+.+.+.. ...|
T Consensus 455 ak~AI~~a~~~gfDVvLiDTAGR~~~~~~lm~~-l~k~--~~~~~pd~i~~vgealvg~dsv~q~~~fn~al~~--~~~~ 529 (587)
T KOG0781|consen 455 AKEAIQEARNQGFDVVLIDTAGRMHNNAPLMTS-LAKL--IKVNKPDLILFVGEALVGNDSVDQLKKFNRALAD--HSTP 529 (587)
T ss_pred HHHHHHHHHhcCCCEEEEeccccccCChhHHHH-HHHH--HhcCCCceEEEehhhhhCcHHHHHHHHHHHHHhc--CCCc
Confidence 12345689999999976644333321 1111 12457899999987754443333 234444444 2233
Q ss_pred ---EEEEEeCCCCCCh
Q 014942 229 ---ILLVLNKKDLIKP 241 (415)
Q Consensus 229 ---iilV~NK~Dl~~~ 241 (415)
=-++++|+|.++.
T Consensus 530 r~id~~~ltk~dtv~d 545 (587)
T KOG0781|consen 530 RLIDGILLTKFDTVDD 545 (587)
T ss_pred cccceEEEEeccchhh
Confidence 2468999998764
No 474
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.46 E-value=0.013 Score=50.02 Aligned_cols=23 Identities=39% Similarity=0.603 Sum_probs=19.8
Q ss_pred cEEEEEecCCCCHHHHHHHHhCC
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~ 138 (415)
|.|+|+|+.|+|||||+..|+..
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999998753
No 475
>PRK08233 hypothetical protein; Provisional
Probab=95.44 E-value=0.012 Score=52.01 Aligned_cols=25 Identities=20% Similarity=0.373 Sum_probs=21.4
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCC
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQ 138 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~ 138 (415)
+...|+|.|.+|+|||||.++|...
T Consensus 2 ~~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 2 KTKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhh
Confidence 3457899999999999999999753
No 476
>PRK08118 topology modulation protein; Reviewed
Probab=95.43 E-value=0.011 Score=52.05 Aligned_cols=22 Identities=36% Similarity=0.489 Sum_probs=19.9
Q ss_pred EEEEEecCCCCHHHHHHHHhCC
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQ 138 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~ 138 (415)
+|+|+|++|+|||||...|...
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999998743
No 477
>PRK08181 transposase; Validated
Probab=95.43 E-value=0.026 Score=53.75 Aligned_cols=22 Identities=32% Similarity=0.386 Sum_probs=19.9
Q ss_pred cEEEEEecCCCCHHHHHHHHhC
Q 014942 116 GYVAVLGKPNVGKSTLANQMIG 137 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~ 137 (415)
..++++|++|+|||.|+.++..
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~ 128 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGL 128 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHH
Confidence 3699999999999999999864
No 478
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=95.43 E-value=0.013 Score=48.31 Aligned_cols=24 Identities=29% Similarity=0.540 Sum_probs=21.3
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCc
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~ 139 (415)
..++++|++|+||||++..+...-
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~ 26 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALAREL 26 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhcc
Confidence 479999999999999999998654
No 479
>KOG2203 consensus GTP-binding protein [General function prediction only]
Probab=95.40 E-value=0.013 Score=59.48 Aligned_cols=90 Identities=26% Similarity=0.311 Sum_probs=52.9
Q ss_pred CCCCccEEEEEecCCCCHHHHHHHHhCCceeeeeC---CCCceEEeEEEEEeCCCeeEEEEeCCCCch-hhhhhHhHHHH
Q 014942 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTN---KPQTTRHRILGICSGPEYQMILYDTPGIIE-KKIHMLDSMMM 186 (415)
Q Consensus 111 ~~~~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~---~~~tt~~~~~~~~~~~~~~l~liDtpG~~~-~~~~~l~~~~~ 186 (415)
....-..|+|+|+-.+|||||+|.|.|.++..+.. ..+||.......+.+-..-+.+.|.-|-.. ++... ...-.
T Consensus 33 ~Gl~YhVVavmG~QSSGKSTLLN~LFgTnF~~MDA~~gRqQTTKGIWlar~~~i~p~i~vmDvEGTDGrERGED-qdFEr 111 (772)
T KOG2203|consen 33 CGLSYHVVAVMGSQSSGKSTLLNHLFGTNFREMDAFKGRQQTTKGIWLARCAGIEPCILVMDVEGTDGRERGED-QDFER 111 (772)
T ss_pred cCcceeEEEEecCcccchHHHHHHHhccChHHHHhhhccccccchhhHHhhcCCCCceEEEecccCCccccccc-ccHHH
Confidence 33444589999999999999999999999875432 334554433333333333467778776421 11111 11122
Q ss_pred HHHHhhhcccceEEE
Q 014942 187 KNVRSAGINADCIVV 201 (415)
Q Consensus 187 ~~~~~~~~~aD~ii~ 201 (415)
+.+.-++.-+|++|+
T Consensus 112 ksALFaiavSevviv 126 (772)
T KOG2203|consen 112 KSALFAIAVSEVVIV 126 (772)
T ss_pred HhHHHHHhhhheehh
Confidence 334455666776664
No 480
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.37 E-value=0.012 Score=52.44 Aligned_cols=22 Identities=41% Similarity=0.711 Sum_probs=20.4
Q ss_pred EEEEEecCCCCHHHHHHHHhCC
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQ 138 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~ 138 (415)
+|+|+|+||+||||+..+|...
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999999865
No 481
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=95.36 E-value=0.25 Score=46.06 Aligned_cols=64 Identities=17% Similarity=0.107 Sum_probs=37.7
Q ss_pred eeEEEEeCCCCchhhhhhHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCC-EEEEEeCCCCC
Q 014942 163 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKDLI 239 (415)
Q Consensus 163 ~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~p-iilV~NK~Dl~ 239 (415)
+.++++|||+-... .....+..||.+|++++.+...-.......+..+. .+.+ +.+|+|+++..
T Consensus 109 yD~VIiD~p~~~~~-----------~~~~~l~~ad~vliv~~~~~~s~~~~~~~~~~~~~--~~~~~~~vv~N~~~~~ 173 (251)
T TIGR01969 109 TDFLLIDAPAGLER-----------DAVTALAAADELLLVVNPEISSITDALKTKIVAEK--LGTAILGVVLNRVTRD 173 (251)
T ss_pred CCEEEEeCCCccCH-----------HHHHHHHhCCeEEEEECCCCchHHHHHHHHHHHHh--cCCceEEEEEECCCch
Confidence 57899999974321 12233567899999998764322111122233333 3444 56899999864
No 482
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.35 E-value=0.014 Score=48.24 Aligned_cols=21 Identities=29% Similarity=0.640 Sum_probs=19.0
Q ss_pred EEEEecCCCCHHHHHHHHhCC
Q 014942 118 VAVLGKPNVGKSTLANQMIGQ 138 (415)
Q Consensus 118 V~ivG~~~vGKSSLln~l~~~ 138 (415)
|+|.|.+||||||+++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999754
No 483
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=95.31 E-value=0.053 Score=51.79 Aligned_cols=65 Identities=26% Similarity=0.387 Sum_probs=49.9
Q ss_pred HHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHHHHHHHhhc
Q 014942 186 MKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKF 254 (415)
Q Consensus 186 ~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~ 254 (415)
.+.....+...|++|=|-|+.-++......+...+ ..+|-|+|+||+||.+..+.....+.+...
T Consensus 37 lr~i~~~l~~~D~iiEvrDaRiPLssrn~~~~~~~----~~k~riiVlNK~DLad~~~~k~~iq~~~~~ 101 (335)
T KOG2485|consen 37 LRAIQNRLPLVDCIIEVRDARIPLSSRNELFQDFL----PPKPRIIVLNKMDLADPKEQKKIIQYLEWQ 101 (335)
T ss_pred HHHHHhhcccccEEEEeeccccCCccccHHHHHhc----CCCceEEEEecccccCchhhhHHHHHHHhh
Confidence 34556668999999999999988866666565554 468999999999999876666666666654
No 484
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.28 E-value=0.014 Score=51.87 Aligned_cols=24 Identities=25% Similarity=0.535 Sum_probs=21.1
Q ss_pred CccEEEEEecCCCCHHHHHHHHhC
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~ 137 (415)
+.+.|+|+|.||+||||+++.|..
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999973
No 485
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=95.28 E-value=0.092 Score=50.61 Aligned_cols=19 Identities=42% Similarity=0.578 Sum_probs=16.5
Q ss_pred EEEEEecCCCCHHHHHHHH
Q 014942 117 YVAVLGKPNVGKSTLANQM 135 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l 135 (415)
+|++.|..||||||+.-.|
T Consensus 2 ~ia~~gKGGVGKTTta~nL 20 (290)
T CHL00072 2 KLAVYGKGGIGKSTTSCNI 20 (290)
T ss_pred eEEEECCCCCcHHHHHHHH
Confidence 5899999999999977655
No 486
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=95.27 E-value=0.13 Score=51.34 Aligned_cols=22 Identities=45% Similarity=0.741 Sum_probs=20.9
Q ss_pred EEEEEecCCCCHHHHHHHHhCC
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQ 138 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~ 138 (415)
+|+|||+.|||||||+..|+|.
T Consensus 615 RiaIVGPNGVGKSTlLkLL~Gk 636 (807)
T KOG0066|consen 615 RIAIVGPNGVGKSTLLKLLIGK 636 (807)
T ss_pred eeEEECCCCccHHHHHHHHhcC
Confidence 8999999999999999999985
No 487
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.25 E-value=0.016 Score=51.21 Aligned_cols=25 Identities=24% Similarity=0.308 Sum_probs=21.9
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCC
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQ 138 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~ 138 (415)
+.+.++|+|.+|+|||||+.+|+..
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHH
Confidence 4558999999999999999999854
No 488
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=95.24 E-value=0.14 Score=46.71 Aligned_cols=19 Identities=37% Similarity=0.651 Sum_probs=15.9
Q ss_pred EEEEEecCCCCHHHHHHHH
Q 014942 117 YVAVLGKPNVGKSTLANQM 135 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l 135 (415)
.|+|.|..||||||+.-.|
T Consensus 2 ~iav~gKGGvGKTt~~~nL 20 (212)
T cd02117 2 QIAIYGKGGIGKSTTSQNL 20 (212)
T ss_pred EEEEECCCcCcHHHHHHHH
Confidence 5889999999999976554
No 489
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.19 E-value=0.014 Score=53.19 Aligned_cols=25 Identities=28% Similarity=0.395 Sum_probs=21.5
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCC
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQ 138 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~ 138 (415)
+...|+|+|++|+|||||++.|.+.
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 3447999999999999999999763
No 490
>PF02263 GBP: Guanylate-binding protein, N-terminal domain; InterPro: IPR015894 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function, and an alpha-helical finger-like C-terminal domain (IPR003191 from INTERPRO). Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3QOF_A 3Q5E_C 3QNU_A 3Q5D_A 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=95.19 E-value=0.025 Score=53.58 Aligned_cols=61 Identities=26% Similarity=0.376 Sum_probs=38.9
Q ss_pred ccEEEEEecCCCCHHHHHHHHhCCc--eeeeeCCCCceEE-eEEEE--EeCCCeeEEEEeCCCCch
Q 014942 115 SGYVAVLGKPNVGKSTLANQMIGQK--LSIVTNKPQTTRH-RILGI--CSGPEYQMILYDTPGIIE 175 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~~~~--~~~~~~~~~tt~~-~~~~~--~~~~~~~l~liDtpG~~~ 175 (415)
-..|+|+|...+|||.|+|.|++.. +.........|.. .+... ...++..+.++||.|+.+
T Consensus 21 v~vvsi~G~~rtGKSfLln~l~~~~~gF~~~~~~~~~T~Giw~w~~~~~~~~~~~v~llDteG~~~ 86 (260)
T PF02263_consen 21 VAVVSIVGPYRTGKSFLLNQLLGPQSGFSWGPTVEPCTKGIWMWSEPLPDGEKVAVVLLDTEGLGD 86 (260)
T ss_dssp EEEEEEEEETTSSHHHHHHHHCCBSSSSESSSCSSST-SCEEEECCE-TTSTCEEEEEEEEECBTT
T ss_pred EEEEEeecCCccchHHHHHHHhcccccccccCCCCCCCcceeeeecccccccceeEEEecchhccc
Confidence 3479999999999999999999753 2211212222322 21111 133567899999999854
No 491
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.18 E-value=0.018 Score=52.38 Aligned_cols=26 Identities=35% Similarity=0.492 Sum_probs=22.2
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCc
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQK 139 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~ 139 (415)
+.-.|+|+|++|+|||||+..|-+-+
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~LE 52 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNGLE 52 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCc
Confidence 44489999999999999999997654
No 492
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=95.18 E-value=0.015 Score=56.87 Aligned_cols=24 Identities=38% Similarity=0.624 Sum_probs=21.6
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCc
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~ 139 (415)
-.++++|++|||||||++.+.|-.
T Consensus 30 ef~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 30 EFVVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 379999999999999999998754
No 493
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=95.15 E-value=0.017 Score=46.77 Aligned_cols=20 Identities=35% Similarity=0.569 Sum_probs=19.0
Q ss_pred EEEEEecCCCCHHHHHHHHh
Q 014942 117 YVAVLGKPNVGKSTLANQMI 136 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~ 136 (415)
.++++|++|+|||||++.+.
T Consensus 17 ~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 17 GVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEcCCCCCHHHHHHHhh
Confidence 69999999999999999986
No 494
>PF05879 RHD3: Root hair defective 3 GTP-binding protein (RHD3); InterPro: IPR008803 This family consists of several eukaryotic root hair defective 3 like GTP-binding proteins. It has been speculated that the RHD3 protein is a member of a novel class of GTP-binding proteins that is widespread in eukaryotes and required for regulated cell enlargement []. The family also contains the homologous Saccharomyces cerevisiae synthetic construct enhancement of YOP1 (SEY1) protein which is involved in membrane trafficking [].; GO: 0016817 hydrolase activity, acting on acid anhydrides
Probab=95.12 E-value=0.014 Score=63.33 Aligned_cols=83 Identities=20% Similarity=0.305 Sum_probs=49.3
Q ss_pred EecCCCCHHHHHHHHhCCceeeeeC--CCCceEEeEEEEEeC---CCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhcc
Q 014942 121 LGKPNVGKSTLANQMIGQKLSIVTN--KPQTTRHRILGICSG---PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (415)
Q Consensus 121 vG~~~vGKSSLln~l~~~~~~~~~~--~~~tt~~~~~~~~~~---~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (415)
+|+-++|||||+|.|.|..+..+.. ..+||+......... ....+.++|+-|........-...-.+.+.-++.-
T Consensus 1 ~g~qssgkstlln~lf~t~f~~m~~~~r~qtt~gi~~~~~~~~~~~~~~~~v~d~eg~d~~er~~~~~fe~~~alf~la~ 80 (742)
T PF05879_consen 1 FGSQSSGKSTLLNHLFGTQFDVMDESGRQQTTKGIWMAKAKEVESSESNILVLDVEGTDGRERGEDQDFERKSALFALAV 80 (742)
T ss_pred CCCCCCcHHHHHHHHHCCCccccccccccccchhhHHHhccccccCCCceEEEeCCCCCchhhccccchHHHHHHHHHHh
Confidence 5899999999999999999875443 334664322222221 23478889998863211111111122334555677
Q ss_pred cceEEEEe
Q 014942 196 ADCIVVLV 203 (415)
Q Consensus 196 aD~ii~Vv 203 (415)
+|++|+-+
T Consensus 81 s~~~iiN~ 88 (742)
T PF05879_consen 81 SDVLIINM 88 (742)
T ss_pred hhheeeeh
Confidence 88887755
No 495
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.10 E-value=0.016 Score=52.78 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=22.1
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCC
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQ 138 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~ 138 (415)
+...|+|.|.+|+|||||++.|.+.
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 5568999999999999999999763
No 496
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=95.10 E-value=0.22 Score=46.32 Aligned_cols=65 Identities=20% Similarity=0.162 Sum_probs=37.4
Q ss_pred eEEEEeCCCCchhhhhhHhHHHHHHHHhhhcccceEEEEecCCCCC-chHHHHHHHHhcccCCCCCEEEEEeCCCCC
Q 014942 164 QMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP-ERIDEILEEGVGDHKDKLPILLVLNKKDLI 239 (415)
Q Consensus 164 ~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~-~~~~~~l~~~l~~~~~~~piilV~NK~Dl~ 239 (415)
.++++|||+... .....++..||.+++++..+... ......+.+++.......++-+|+|++|..
T Consensus 116 D~viiD~pp~~~-----------~~~~~~l~~ad~vii~~~~~~~s~~~~~~~~~~l~~~~~~~~~~~iv~n~~~~~ 181 (246)
T TIGR03371 116 DWVLIDVPRGPS-----------PITRQALAAADLVLVVVNADAACYATLHQQALALFAGSGPRIGPHFLINQFDPA 181 (246)
T ss_pred CEEEEECCCCch-----------HHHHHHHHhCCeEEEEeCCCHHHHHHHHHHHHHHhhcccccccceEEeeccCcc
Confidence 688999987322 11334467899999998765322 111112323333212345577899999864
No 497
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.09 E-value=0.016 Score=51.90 Aligned_cols=22 Identities=45% Similarity=0.640 Sum_probs=20.4
Q ss_pred EEEEEecCCCCHHHHHHHHhCC
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQ 138 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~ 138 (415)
.|+++|++|||||||+|-+.|-
T Consensus 33 ~vv~lGpSGcGKTTLLnl~AGf 54 (259)
T COG4525 33 LVVVLGPSGCGKTTLLNLIAGF 54 (259)
T ss_pred EEEEEcCCCccHHHHHHHHhcC
Confidence 7999999999999999999874
No 498
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=95.08 E-value=0.017 Score=51.72 Aligned_cols=22 Identities=18% Similarity=0.379 Sum_probs=20.2
Q ss_pred EEEEEecCCCCHHHHHHHHhCC
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQ 138 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~ 138 (415)
.|+|+|++|+|||||++.|.+.
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999999764
No 499
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.07 E-value=0.016 Score=51.54 Aligned_cols=24 Identities=25% Similarity=0.458 Sum_probs=21.7
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCc
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~ 139 (415)
-.++|+|+.|+|||||++.|.|..
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCC
Confidence 389999999999999999999853
No 500
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.06 E-value=0.017 Score=52.60 Aligned_cols=24 Identities=33% Similarity=0.484 Sum_probs=21.6
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCc
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~ 139 (415)
-.++|+|+.|+|||||++.|.|..
T Consensus 28 ~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 28 EFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 379999999999999999999853
Done!