Query 014942
Match_columns 415
No_of_seqs 681 out of 3925
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 03:53:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014942.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014942hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iev_A GTP-binding protein ERA 100.0 4E-59 1.4E-63 451.9 29.5 296 110-409 5-307 (308)
2 1wf3_A GTP-binding protein; GT 100.0 1.8E-58 6.3E-63 445.4 27.3 292 113-410 5-298 (301)
3 1ega_A Protein (GTP-binding pr 100.0 2.7E-55 9.1E-60 423.7 27.5 295 112-411 5-300 (301)
4 2dyk_A GTP-binding protein; GT 99.9 2.3E-24 7.8E-29 186.4 12.1 160 116-283 2-161 (161)
5 4dhe_A Probable GTP-binding pr 99.9 1.4E-23 4.7E-28 192.1 16.1 171 113-285 27-212 (223)
6 1mky_A Probable GTP-binding pr 99.9 4.9E-24 1.7E-28 215.7 13.6 165 116-284 2-166 (439)
7 2aka_B Dynamin-1; fusion prote 99.9 1.2E-24 4E-29 208.6 7.4 206 113-325 24-292 (299)
8 2qpt_A EH domain-containing pr 99.9 6.6E-26 2.3E-30 234.8 -4.5 230 114-369 64-340 (550)
9 3pqc_A Probable GTP-binding pr 99.9 1.4E-22 4.9E-27 180.7 17.6 167 113-284 21-194 (195)
10 2qu8_A Putative nucleolar GTP- 99.9 1.9E-22 6.5E-27 185.8 18.6 175 109-284 23-205 (228)
11 1svi_A GTP-binding protein YSX 99.9 1.7E-22 5.7E-27 180.7 17.2 166 113-283 21-194 (195)
12 2gj8_A MNME, tRNA modification 99.9 3.5E-23 1.2E-27 182.5 12.5 162 115-284 4-166 (172)
13 2hjg_A GTP-binding protein ENG 99.9 2.3E-23 7.7E-28 210.6 11.2 223 116-363 4-233 (436)
14 4dkx_A RAS-related protein RAB 99.9 3.3E-23 1.1E-27 189.8 11.2 162 112-284 10-176 (216)
15 1zj6_A ADP-ribosylation factor 99.9 4E-22 1.4E-26 177.5 17.9 164 114-290 15-184 (187)
16 1f6b_A SAR1; gtpases, N-termin 99.9 2.6E-22 8.9E-27 181.0 16.3 157 113-282 23-197 (198)
17 2fg5_A RAB-22B, RAS-related pr 99.9 1.7E-22 5.8E-27 180.9 14.4 163 114-287 22-189 (192)
18 3q72_A GTP-binding protein RAD 99.9 1.3E-22 4.4E-27 176.4 12.5 157 115-282 2-162 (166)
19 1jwy_B Dynamin A GTPase domain 99.9 3.8E-23 1.3E-27 199.7 10.0 206 113-325 22-298 (315)
20 2nzj_A GTP-binding protein REM 99.9 1.3E-22 4.4E-27 177.8 12.5 161 114-283 3-168 (175)
21 3iby_A Ferrous iron transport 99.9 8.6E-23 3E-27 191.9 12.1 166 116-291 2-173 (256)
22 1r2q_A RAS-related protein RAB 99.9 1.8E-22 6.1E-27 175.7 13.0 160 114-284 5-169 (170)
23 3gee_A MNME, tRNA modification 99.9 2.7E-22 9.1E-27 204.0 16.2 161 115-283 233-397 (476)
24 1fzq_A ADP-ribosylation factor 99.9 1.5E-21 5.1E-26 173.3 19.1 159 113-284 14-178 (181)
25 2xtp_A GTPase IMAP family memb 99.9 1.2E-23 4.1E-28 197.9 5.5 185 112-301 19-224 (260)
26 2h17_A ADP-ribosylation factor 99.9 6.3E-22 2.1E-26 175.4 16.0 158 111-281 17-180 (181)
27 1c1y_A RAS-related protein RAP 99.9 4.5E-22 1.6E-26 172.8 14.3 158 114-282 2-165 (167)
28 4bas_A ADP-ribosylation factor 99.9 5.2E-22 1.8E-26 177.9 15.0 162 110-284 12-189 (199)
29 1m2o_B GTP-binding protein SAR 99.9 9.4E-22 3.2E-26 176.0 16.5 156 114-282 22-190 (190)
30 3izq_1 HBS1P, elongation facto 99.9 1.9E-22 6.6E-27 211.1 13.6 211 113-341 165-437 (611)
31 2efe_B Small GTP-binding prote 99.9 4.7E-22 1.6E-26 175.3 13.9 162 113-285 10-176 (181)
32 1z0j_A RAB-22, RAS-related pro 99.9 3.8E-22 1.3E-26 173.8 13.0 161 114-284 5-169 (170)
33 2wji_A Ferrous iron transport 99.9 1.3E-22 4.4E-27 177.3 10.0 161 114-283 2-164 (165)
34 2hjg_A GTP-binding protein ENG 99.9 2.1E-22 7.1E-27 203.5 12.4 169 114-284 174-349 (436)
35 1upt_A ARL1, ADP-ribosylation 99.9 1.5E-21 5E-26 170.4 16.1 158 114-284 6-169 (171)
36 1ek0_A Protein (GTP-binding pr 99.9 3.5E-22 1.2E-26 173.8 12.0 160 115-284 3-169 (170)
37 1r8s_A ADP-ribosylation factor 99.9 1E-21 3.5E-26 170.4 14.7 155 117-284 2-162 (164)
38 3gj0_A GTP-binding nuclear pro 99.9 7.5E-23 2.6E-27 187.3 7.9 166 112-289 12-180 (221)
39 4dcu_A GTP-binding protein ENG 99.9 2.4E-22 8.3E-27 204.2 12.4 167 111-284 19-185 (456)
40 2h57_A ADP-ribosylation factor 99.9 1.4E-21 4.9E-26 174.3 16.0 160 113-283 19-186 (190)
41 1zd9_A ADP-ribosylation factor 99.9 2.1E-21 7.1E-26 173.2 17.1 159 114-284 21-185 (188)
42 1wms_A RAB-9, RAB9, RAS-relate 99.9 1.2E-21 4.3E-26 172.0 15.0 161 114-284 6-174 (177)
43 2g6b_A RAS-related protein RAB 99.9 4.1E-22 1.4E-26 175.6 11.9 160 114-284 9-174 (180)
44 2b6h_A ADP-ribosylation factor 99.9 2E-21 6.9E-26 174.2 16.4 159 113-284 27-191 (192)
45 3tkl_A RAS-related protein RAB 99.9 8.7E-22 3E-26 176.0 13.9 160 114-284 15-179 (196)
46 1x3s_A RAS-related protein RAB 99.9 6.4E-22 2.2E-26 176.6 12.9 167 114-291 14-185 (195)
47 3a1s_A Iron(II) transport prot 99.9 4.4E-22 1.5E-26 187.3 12.1 163 114-283 4-166 (258)
48 3i8s_A Ferrous iron transport 99.9 2.1E-22 7.2E-27 191.2 9.7 165 114-285 2-170 (274)
49 1ksh_A ARF-like protein 2; sma 99.9 1.8E-21 6.1E-26 172.8 15.1 159 114-285 17-181 (186)
50 2y8e_A RAB-protein 6, GH09086P 99.9 6.5E-22 2.2E-26 173.8 12.0 160 113-284 12-177 (179)
51 4djt_A GTP-binding nuclear pro 99.9 8.1E-22 2.8E-26 179.8 13.0 167 114-290 10-181 (218)
52 3tw8_B RAS-related protein RAB 99.9 5.1E-22 1.7E-26 174.8 10.9 157 114-283 8-170 (181)
53 2fn4_A P23, RAS-related protei 99.9 9E-22 3.1E-26 173.2 12.6 161 111-283 5-171 (181)
54 2il1_A RAB12; G-protein, GDP, 99.9 1.5E-21 5E-26 174.9 14.1 160 113-282 24-188 (192)
55 2lkc_A Translation initiation 99.9 5.3E-22 1.8E-26 174.5 10.8 158 113-283 6-170 (178)
56 1g16_A RAS-related protein SEC 99.9 1.2E-21 3.9E-26 170.7 12.8 158 115-283 3-164 (170)
57 4dsu_A GTPase KRAS, isoform 2B 99.9 1.5E-21 5.1E-26 173.1 13.7 158 114-283 3-165 (189)
58 1mh1_A RAC1; GTP-binding, GTPa 99.9 8.3E-22 2.8E-26 174.3 12.0 163 114-287 4-183 (186)
59 1z0f_A RAB14, member RAS oncog 99.9 1.4E-21 4.8E-26 171.6 13.0 159 114-283 14-177 (179)
60 2j1l_A RHO-related GTP-binding 99.9 1.2E-21 4.1E-26 178.7 12.6 161 113-284 32-209 (214)
61 1wxq_A GTP-binding protein; st 99.9 5.5E-23 1.9E-27 204.7 4.0 247 117-383 2-369 (397)
62 1xzp_A Probable tRNA modificat 99.9 2.8E-22 9.7E-27 204.0 9.2 161 116-283 244-404 (482)
63 1u8z_A RAS-related protein RAL 99.9 1E-21 3.5E-26 170.4 11.4 157 114-283 3-166 (168)
64 3geh_A MNME, tRNA modification 99.9 6.8E-22 2.3E-26 200.3 11.9 163 115-286 224-386 (462)
65 1kao_A RAP2A; GTP-binding prot 99.9 6.4E-22 2.2E-26 171.5 9.7 157 114-282 2-164 (167)
66 2bme_A RAB4A, RAS-related prot 99.9 2.3E-21 7.7E-26 171.9 13.3 158 114-283 9-172 (186)
67 3kkq_A RAS-related protein M-R 99.9 1.9E-21 6.6E-26 172.0 12.8 160 110-282 13-180 (183)
68 3reg_A RHO-like small GTPase; 99.9 1.2E-21 4E-26 175.5 11.4 160 114-284 22-188 (194)
69 1moz_A ARL1, ADP-ribosylation 99.9 4E-21 1.4E-25 169.8 14.8 158 113-283 16-179 (183)
70 4dcu_A GTP-binding protein ENG 99.9 1.1E-21 3.7E-26 199.4 12.6 169 114-284 194-369 (456)
71 2oil_A CATX-8, RAS-related pro 99.9 1.3E-21 4.4E-26 174.9 11.6 159 114-282 24-186 (193)
72 1mky_A Probable GTP-binding pr 99.9 7.8E-21 2.7E-25 192.2 18.7 169 114-284 179-355 (439)
73 3t5g_A GTP-binding protein RHE 99.9 6.6E-22 2.3E-26 174.7 9.5 162 113-286 4-171 (181)
74 3tr5_A RF-3, peptide chain rel 99.9 1.6E-22 5.4E-27 208.2 5.8 231 114-359 12-349 (528)
75 2hup_A RAS-related protein RAB 99.9 3.7E-21 1.3E-25 173.7 14.1 159 114-283 28-192 (201)
76 2wjg_A FEOB, ferrous iron tran 99.9 1.6E-21 5.6E-26 173.2 11.5 166 112-286 4-171 (188)
77 3clv_A RAB5 protein, putative; 99.9 6.6E-21 2.2E-25 170.7 15.4 156 114-283 6-203 (208)
78 2fh5_B SR-beta, signal recogni 99.9 3.2E-21 1.1E-25 175.3 13.6 159 114-282 6-214 (214)
79 4gzl_A RAS-related C3 botulinu 99.9 2.2E-21 7.4E-26 175.7 12.2 158 114-282 29-203 (204)
80 2atx_A Small GTP binding prote 99.9 2.7E-21 9.4E-26 172.9 12.7 159 114-283 17-192 (194)
81 2ce2_X GTPase HRAS; signaling 99.9 4.8E-21 1.7E-25 165.5 13.8 157 115-283 3-164 (166)
82 2iwr_A Centaurin gamma 1; ANK 99.9 2.9E-21 1E-25 170.0 12.6 155 113-283 5-168 (178)
83 2x77_A ADP-ribosylation factor 99.9 3.2E-21 1.1E-25 171.7 13.0 158 114-284 21-184 (189)
84 3cph_A RAS-related protein SEC 99.9 2.7E-21 9.3E-26 175.3 12.7 159 114-283 19-181 (213)
85 2ew1_A RAS-related protein RAB 99.9 2.6E-21 9E-26 175.0 12.2 159 114-283 25-188 (201)
86 1z06_A RAS-related protein RAB 99.9 3.2E-21 1.1E-25 171.9 12.6 163 113-284 18-188 (189)
87 2erx_A GTP-binding protein DI- 99.9 2.8E-21 9.5E-26 168.4 11.9 158 115-284 3-167 (172)
88 2a5j_A RAS-related protein RAB 99.9 2E-21 6.9E-26 173.6 11.2 159 114-283 20-183 (191)
89 1vg8_A RAS-related protein RAB 99.9 2.9E-21 9.8E-26 174.3 12.3 161 114-284 7-175 (207)
90 3q3j_B RHO-related GTP-binding 99.9 9.8E-22 3.3E-26 179.5 9.3 163 113-286 25-205 (214)
91 2a9k_A RAS-related protein RAL 99.9 3.5E-21 1.2E-25 170.3 12.5 158 113-283 16-180 (187)
92 2gf9_A RAS-related protein RAB 99.9 3.1E-21 1.1E-25 172.0 12.0 159 115-283 22-184 (189)
93 3dz8_A RAS-related protein RAB 99.8 1.1E-21 3.8E-26 175.3 9.0 160 114-283 22-185 (191)
94 3b1v_A Ferrous iron uptake tra 99.8 1.3E-21 4.3E-26 185.5 9.7 160 115-284 3-164 (272)
95 2o52_A RAS-related protein RAB 99.8 2.4E-21 8.1E-26 174.7 11.1 158 114-283 24-187 (200)
96 1zbd_A Rabphilin-3A; G protein 99.8 3.7E-21 1.3E-25 173.3 12.3 160 114-283 7-170 (203)
97 2q3h_A RAS homolog gene family 99.8 2.1E-21 7.2E-26 174.7 10.6 160 113-283 18-194 (201)
98 3k53_A Ferrous iron transport 99.8 2.9E-21 9.9E-26 182.9 12.1 166 114-285 2-167 (271)
99 2x2e_A Dynamin-1; nitration, h 99.8 1.7E-22 5.8E-27 198.7 3.4 214 113-333 29-315 (353)
100 3q85_A GTP-binding protein REM 99.8 3.8E-21 1.3E-25 167.6 11.6 157 116-282 3-165 (169)
101 3bwd_D RAC-like GTP-binding pr 99.8 7.5E-22 2.6E-26 174.2 7.1 159 114-283 7-180 (182)
102 2fu5_C RAS-related protein RAB 99.8 1E-21 3.6E-26 173.7 7.8 158 114-283 7-170 (183)
103 1ky3_A GTP-binding protein YPT 99.8 5.4E-21 1.8E-25 168.3 12.2 159 114-282 7-176 (182)
104 2hxs_A RAB-26, RAS-related pro 99.8 1.5E-21 5.1E-26 171.6 8.6 161 114-286 5-175 (178)
105 3oes_A GTPase rhebl1; small GT 99.8 1.2E-21 4.2E-26 176.6 8.2 160 113-284 22-187 (201)
106 3ihw_A Centg3; RAS, centaurin, 99.8 8.6E-21 2.9E-25 169.0 13.6 155 111-282 16-178 (184)
107 2p5s_A RAS and EF-hand domain 99.8 4.8E-21 1.6E-25 172.4 12.0 160 114-283 27-196 (199)
108 2j0v_A RAC-like GTP-binding pr 99.8 3.1E-21 1.1E-25 175.1 10.9 160 114-284 8-180 (212)
109 1z08_A RAS-related protein RAB 99.8 1.8E-21 6E-26 169.7 8.8 158 114-283 5-168 (170)
110 2bov_A RAla, RAS-related prote 99.8 5.2E-21 1.8E-25 172.3 12.0 159 112-283 11-176 (206)
111 3con_A GTPase NRAS; structural 99.8 1E-20 3.5E-25 168.5 13.8 160 112-283 18-182 (190)
112 1z2a_A RAS-related protein RAB 99.8 5E-21 1.7E-25 166.3 11.3 156 114-282 4-165 (168)
113 3bc1_A RAS-related protein RAB 99.8 1E-20 3.5E-25 168.3 13.6 158 114-283 10-184 (195)
114 2gf0_A GTP-binding protein DI- 99.8 1.1E-20 3.7E-25 169.3 13.8 160 114-285 7-172 (199)
115 3llu_A RAS-related GTP-binding 99.8 1.5E-20 5.1E-25 168.9 14.6 166 110-282 15-195 (196)
116 3cbq_A GTP-binding protein REM 99.8 5.9E-21 2E-25 171.7 12.0 161 113-284 21-188 (195)
117 3zvr_A Dynamin-1; hydrolase, D 99.8 1.8E-21 6.3E-26 205.8 9.8 212 114-333 50-335 (772)
118 2gco_A H9, RHO-related GTP-bin 99.8 8.2E-21 2.8E-25 171.2 12.7 159 114-282 24-198 (201)
119 3qq5_A Small GTP-binding prote 99.8 1.1E-21 3.9E-26 196.3 7.5 164 114-285 33-197 (423)
120 2fv8_A H6, RHO-related GTP-bin 99.8 7.7E-21 2.6E-25 172.2 11.9 160 114-284 24-200 (207)
121 3o47_A ADP-ribosylation factor 99.8 2E-20 6.9E-25 182.1 15.6 158 114-284 164-327 (329)
122 2bcg_Y Protein YP2, GTP-bindin 99.8 6.4E-21 2.2E-25 172.3 11.1 159 114-283 7-170 (206)
123 2g3y_A GTP-binding protein GEM 99.8 6.6E-21 2.3E-25 173.9 10.9 161 114-283 36-202 (211)
124 2atv_A RERG, RAS-like estrogen 99.8 1.3E-20 4.6E-25 168.9 12.8 157 113-283 26-190 (196)
125 3j2k_7 ERF3, eukaryotic polype 99.8 3.7E-20 1.3E-24 187.0 17.4 200 114-341 16-276 (439)
126 3t1o_A Gliding protein MGLA; G 99.8 4.4E-21 1.5E-25 171.2 9.5 159 114-283 13-191 (198)
127 2e87_A Hypothetical protein PH 99.8 9.5E-20 3.2E-24 179.4 19.0 167 113-283 165-335 (357)
128 2f7s_A C25KG, RAS-related prot 99.8 1.1E-20 3.7E-25 172.2 11.2 159 114-283 24-198 (217)
129 1m7b_A RND3/RHOE small GTP-bin 99.8 6E-21 2.1E-25 169.5 8.4 158 114-282 6-181 (184)
130 3cpj_B GTP-binding protein YPT 99.8 7.5E-21 2.6E-25 174.4 8.9 159 114-284 12-176 (223)
131 2yc2_C IFT27, small RAB-relate 99.8 8.4E-21 2.9E-25 171.1 9.0 159 114-283 19-191 (208)
132 1lnz_A SPO0B-associated GTP-bi 99.8 1.2E-20 4E-25 184.2 10.5 168 116-291 159-339 (342)
133 3c5c_A RAS-like protein 12; GD 99.8 1.1E-20 3.9E-25 168.4 9.0 157 113-283 19-185 (187)
134 3mca_A HBS1, elongation factor 99.8 4E-22 1.4E-26 208.2 -1.1 200 114-341 176-437 (592)
135 2cxx_A Probable GTP-binding pr 99.8 1.6E-19 5.4E-24 160.3 15.5 160 116-284 2-184 (190)
136 3l0i_B RAS-related protein RAB 99.8 4.8E-22 1.6E-26 179.0 -1.2 160 114-284 32-196 (199)
137 3lxw_A GTPase IMAP family memb 99.8 3.1E-20 1.1E-24 173.5 11.1 175 114-291 20-216 (247)
138 3lvq_E ARF-GAP with SH3 domain 99.8 9.3E-20 3.2E-24 187.1 15.6 161 114-287 321-487 (497)
139 2cjw_A GTP-binding protein GEM 99.8 2.5E-20 8.5E-25 167.2 9.5 161 114-283 5-171 (192)
140 1gwn_A RHO-related GTP-binding 99.8 1.8E-20 6.1E-25 170.0 8.3 158 114-282 27-202 (205)
141 1f60_A Elongation factor EEF1A 99.8 4.2E-21 1.4E-25 195.0 4.0 230 114-363 6-329 (458)
142 1wb1_A Translation elongation 99.8 1.2E-19 4.2E-24 185.2 14.7 161 112-283 16-188 (482)
143 2zej_A Dardarin, leucine-rich 99.8 1.2E-19 4.2E-24 161.2 12.7 159 116-284 3-178 (184)
144 3r7w_A Gtpase1, GTP-binding pr 99.8 3.4E-19 1.2E-23 171.8 16.7 163 115-283 3-180 (307)
145 2qtf_A Protein HFLX, GTP-bindi 99.8 1.9E-19 6.5E-24 177.3 13.6 169 117-287 181-357 (364)
146 3th5_A RAS-related C3 botulinu 99.7 2.9E-21 9.8E-26 174.4 0.0 158 114-282 29-203 (204)
147 3sjy_A Translation initiation 99.8 4.1E-19 1.4E-23 177.6 15.3 162 114-285 7-193 (403)
148 3t5d_A Septin-7; GTP-binding p 99.8 6.1E-19 2.1E-23 167.2 15.4 167 115-284 8-204 (274)
149 3p26_A Elongation factor 1 alp 99.8 3.8E-20 1.3E-24 189.3 6.5 211 114-341 32-303 (483)
150 3cb4_D GTP-binding protein LEP 99.8 1.3E-19 4.3E-24 188.7 10.6 199 115-340 4-223 (599)
151 2ywe_A GTP-binding protein LEP 99.8 4.5E-19 1.5E-23 184.3 14.5 200 114-340 5-225 (600)
152 2elf_A Protein translation elo 99.8 7.8E-20 2.7E-24 180.5 8.4 191 117-341 23-226 (370)
153 3vqt_A RF-3, peptide chain rel 99.8 7.3E-20 2.5E-24 189.3 8.1 236 114-364 30-372 (548)
154 3izy_P Translation initiation 99.8 1.1E-20 3.7E-25 194.0 1.3 159 114-284 3-168 (537)
155 1dar_A EF-G, elongation factor 99.8 1.5E-19 5.1E-24 192.0 10.1 231 114-360 11-361 (691)
156 2c78_A Elongation factor TU-A; 99.8 1.3E-19 4.4E-24 181.4 8.7 201 114-340 10-253 (405)
157 1zo1_I IF2, translation initia 99.8 7.9E-21 2.7E-25 193.5 -0.1 254 113-396 2-262 (501)
158 2rdo_7 EF-G, elongation factor 99.8 8E-19 2.7E-23 186.7 15.2 236 114-365 9-374 (704)
159 2wkq_A NPH1-1, RAS-related C3 99.8 3.1E-19 1.1E-23 172.8 11.1 159 114-283 154-329 (332)
160 2h5e_A Peptide chain release f 99.8 2.4E-19 8.1E-24 184.7 9.5 232 114-360 12-351 (529)
161 1kk1_A EIF2gamma; initiation o 99.8 5.3E-18 1.8E-22 169.9 17.0 211 114-342 9-251 (410)
162 2xex_A Elongation factor G; GT 99.8 2.3E-19 7.9E-24 190.6 7.2 232 114-361 9-362 (693)
163 3lxx_A GTPase IMAP family memb 99.8 2.9E-18 1E-22 159.0 12.4 168 114-284 28-214 (239)
164 1s0u_A EIF-2-gamma, translatio 99.8 9.6E-18 3.3E-22 167.9 17.1 162 114-285 7-199 (408)
165 1pui_A ENGB, probable GTP-bind 99.8 1.7E-17 6E-22 149.9 17.2 167 114-286 25-201 (210)
166 1d2e_A Elongation factor TU (E 99.8 6.5E-18 2.2E-22 168.5 15.2 201 115-341 3-237 (397)
167 1g7s_A Translation initiation 99.7 2.1E-18 7.1E-23 179.7 10.2 207 113-342 3-266 (594)
168 3dpu_A RAB family protein; roc 99.7 2.6E-18 9E-23 177.9 10.1 160 113-287 39-211 (535)
169 1jny_A EF-1-alpha, elongation 99.7 1.4E-18 4.7E-23 175.5 7.7 149 114-273 5-202 (435)
170 1zun_B Sulfate adenylate trans 99.7 2.4E-17 8.2E-22 166.3 15.6 148 115-273 24-213 (434)
171 2www_A Methylmalonic aciduria 99.7 5.1E-19 1.7E-23 173.4 2.9 188 114-324 73-317 (349)
172 3c5h_A Glucocorticoid receptor 99.7 1.3E-18 4.3E-23 163.3 5.1 168 112-282 16-253 (255)
173 3p32_A Probable GTPase RV1496/ 99.7 1.4E-18 4.9E-23 170.7 5.8 184 114-319 78-317 (355)
174 2f9l_A RAB11B, member RAS onco 99.7 1.9E-17 6.6E-22 148.8 12.3 157 115-283 5-167 (199)
175 3avx_A Elongation factor TS, e 99.7 7.6E-18 2.6E-22 183.2 11.1 203 113-341 294-528 (1289)
176 2dy1_A Elongation factor G; tr 99.7 1.9E-17 6.5E-22 175.2 11.7 115 114-239 8-139 (665)
177 2j69_A Bacterial dynamin-like 99.7 1.8E-17 6E-22 176.2 11.5 162 114-283 68-324 (695)
178 3r7w_B Gtpase2, GTP-binding pr 99.7 4.5E-17 1.5E-21 156.6 12.8 160 117-284 1-174 (331)
179 2p67_A LAO/AO transport system 99.7 2E-17 6.9E-22 161.6 7.1 184 114-320 55-295 (341)
180 1nrj_B SR-beta, signal recogni 99.7 4.7E-17 1.6E-21 148.1 9.0 144 114-270 11-170 (218)
181 4a9a_A Ribosome-interacting GT 99.7 1.4E-16 4.9E-21 156.5 12.4 120 116-238 73-194 (376)
182 1oix_A RAS-related protein RAB 99.7 1.8E-16 6E-21 141.8 11.6 156 115-282 29-190 (191)
183 1r5b_A Eukaryotic peptide chai 99.7 2.5E-16 8.6E-21 160.2 11.8 150 115-275 43-243 (467)
184 1h65_A Chloroplast outer envel 99.7 6.6E-16 2.3E-20 145.9 13.3 127 114-242 38-170 (270)
185 3def_A T7I23.11 protein; chlor 99.6 8.1E-16 2.8E-20 144.7 12.9 126 113-240 34-165 (262)
186 1udx_A The GTP-binding protein 99.6 1.5E-15 5.3E-20 151.4 15.1 164 116-286 158-327 (416)
187 3t34_A Dynamin-related protein 99.6 1.1E-15 3.8E-20 150.4 13.5 160 114-277 33-254 (360)
188 4fn5_A EF-G 1, elongation fact 99.6 9.7E-17 3.3E-21 171.1 6.4 116 114-240 12-151 (709)
189 2qag_A Septin-2, protein NEDD5 99.6 1E-15 3.5E-20 150.6 12.4 166 115-284 37-237 (361)
190 3j25_A Tetracycline resistance 99.6 3.7E-16 1.3E-20 164.6 6.1 200 116-341 3-281 (638)
191 2ged_A SR-beta, signal recogni 99.6 1.2E-15 4.1E-20 135.8 8.4 125 114-250 47-180 (193)
192 1yrb_A ATP(GTP)binding protein 99.6 2.7E-15 9.2E-20 140.5 11.1 169 112-286 11-259 (262)
193 2qm8_A GTPase/ATPase; G protei 99.6 1.3E-15 4.5E-20 148.4 8.9 185 114-321 54-296 (337)
194 2v3c_C SRP54, signal recogniti 99.6 2.6E-17 9E-22 165.2 -5.2 244 116-381 100-414 (432)
195 2wsm_A Hydrogenase expression/ 99.6 3.5E-15 1.2E-19 136.0 8.3 153 114-284 29-214 (221)
196 1jal_A YCHF protein; nucleotid 99.5 6.6E-14 2.3E-18 136.8 13.1 89 116-207 3-108 (363)
197 2qag_C Septin-7; cell cycle, c 99.5 1.9E-13 6.7E-18 136.3 13.9 163 116-283 32-226 (418)
198 2qnr_A Septin-2, protein NEDD5 99.5 1.7E-13 5.6E-18 131.5 12.4 163 115-283 18-213 (301)
199 2j37_W Signal recognition part 99.5 1.1E-15 3.7E-20 155.8 -4.7 258 114-381 100-422 (504)
200 2ohf_A Protein OLA1, GTP-bindi 99.4 4.8E-14 1.6E-18 139.1 4.5 190 114-328 21-232 (396)
201 2dby_A GTP-binding protein; GD 99.4 3.2E-13 1.1E-17 132.7 9.3 87 116-207 2-111 (368)
202 1n0u_A EF-2, elongation factor 99.4 7.8E-14 2.7E-18 151.1 5.4 115 114-239 18-163 (842)
203 2hf9_A Probable hydrogenase ni 99.4 8.1E-13 2.8E-17 120.6 9.1 57 226-282 164-222 (226)
204 1tq4_A IIGP1, interferon-induc 99.3 6.5E-12 2.2E-16 125.0 13.2 191 114-315 68-288 (413)
205 3ec1_A YQEH GTPase; atnos1, at 99.3 5.6E-14 1.9E-18 138.6 -3.4 149 116-271 163-318 (369)
206 3h2y_A GTPase family protein; 99.3 1.1E-13 3.9E-18 136.3 -1.7 144 116-266 161-312 (368)
207 1ni3_A YCHF GTPase, YCHF GTP-b 99.2 2.1E-13 7.3E-18 134.8 -3.7 183 114-329 19-235 (392)
208 4fid_A G protein alpha subunit 99.2 2.1E-11 7.3E-16 118.0 9.1 76 156-240 154-242 (340)
209 2qag_B Septin-6, protein NEDD5 99.2 1.7E-10 5.9E-15 114.7 14.5 146 117-265 44-217 (427)
210 3ohm_A Guanine nucleotide-bind 99.1 1.5E-10 5.2E-15 111.6 11.4 118 157-283 161-317 (327)
211 1u0l_A Probable GTPase ENGC; p 99.0 5.4E-10 1.8E-14 107.0 9.5 135 130-280 32-169 (301)
212 3sop_A Neuronal-specific septi 99.0 1.5E-09 5.2E-14 102.1 11.8 131 116-249 3-163 (270)
213 1cip_A Protein (guanine nucleo 99.0 2.1E-10 7.4E-15 112.0 5.6 118 157-283 187-343 (353)
214 1zcb_A G alpha I/13; GTP-bindi 98.9 8.1E-10 2.8E-14 108.3 5.3 117 157-282 195-351 (362)
215 1azs_C GS-alpha; complex (lyas 98.9 3.3E-09 1.1E-13 104.9 7.8 116 158-282 212-383 (402)
216 1puj_A YLQF, conserved hypothe 98.9 5.3E-10 1.8E-14 105.9 2.0 59 114-175 119-177 (282)
217 2xtz_A Guanine nucleotide-bind 98.8 2.7E-09 9.1E-14 104.2 6.2 113 161-282 181-343 (354)
218 3l82_B F-box only protein 4; T 98.8 2.8E-08 9.5E-13 88.8 9.7 100 185-284 115-223 (227)
219 1f5n_A Interferon-induced guan 98.7 1.2E-08 4.2E-13 105.5 6.8 60 114-175 37-103 (592)
220 3dm5_A SRP54, signal recogniti 98.7 6.4E-08 2.2E-12 96.7 11.3 148 114-274 99-281 (443)
221 2xxa_A Signal recognition part 98.7 7.1E-10 2.4E-14 111.2 -2.9 240 115-376 100-410 (433)
222 1puj_A YLQF, conserved hypothe 98.7 7E-08 2.4E-12 91.3 9.7 102 168-283 4-105 (282)
223 2yv5_A YJEQ protein; hydrolase 98.6 1.3E-07 4.4E-12 90.4 8.8 85 191-280 75-165 (302)
224 3cnl_A YLQF, putative uncharac 98.5 3E-08 1E-12 92.8 3.4 57 116-175 100-156 (262)
225 3h2y_A GTPase family protein; 98.5 2.2E-07 7.7E-12 91.2 8.1 93 187-283 61-159 (368)
226 3l2o_B F-box only protein 4; s 98.5 3.5E-07 1.2E-11 85.6 8.5 98 187-284 202-308 (312)
227 3ec1_A YQEH GTPase; atnos1, at 98.4 5E-07 1.7E-11 88.7 8.9 91 189-283 65-161 (369)
228 3kl4_A SRP54, signal recogniti 98.4 4.7E-07 1.6E-11 90.4 8.2 145 115-272 97-278 (433)
229 3cnl_A YLQF, putative uncharac 98.3 3.9E-07 1.3E-11 85.2 4.1 86 188-282 14-99 (262)
230 3szr_A Interferon-induced GTP- 98.3 1.6E-06 5.6E-11 90.6 8.7 78 163-242 147-230 (608)
231 1j8m_F SRP54, signal recogniti 98.2 3.6E-06 1.2E-10 80.1 9.8 145 115-273 98-280 (297)
232 3q5d_A Atlastin-1; G protein, 98.2 2.5E-06 8.5E-11 85.4 8.4 63 112-175 64-152 (447)
233 1t9h_A YLOQ, probable GTPase E 97.8 8.8E-06 3E-10 77.6 3.4 84 192-278 83-171 (307)
234 3e70_C DPA, signal recognition 97.7 0.00017 5.7E-09 69.4 10.0 147 114-273 128-309 (328)
235 1rj9_A FTSY, signal recognitio 97.6 0.00035 1.2E-08 66.4 11.8 122 115-240 102-261 (304)
236 2yhs_A FTSY, cell division pro 97.5 0.00041 1.4E-08 70.0 10.8 121 115-239 293-451 (503)
237 2px0_A Flagellar biosynthesis 97.5 0.00021 7.1E-09 67.8 8.1 119 114-241 104-254 (296)
238 1zu4_A FTSY; GTPase, signal re 97.5 0.0011 3.9E-08 63.3 12.9 118 115-240 105-268 (320)
239 2rcn_A Probable GTPase ENGC; Y 97.4 0.00034 1.2E-08 67.9 8.5 83 192-278 127-213 (358)
240 1t9h_A YLOQ, probable GTPase E 97.3 6.3E-05 2.1E-09 71.7 1.9 55 116-174 174-235 (307)
241 4dzz_A Plasmid partitioning pr 97.3 0.00034 1.2E-08 61.8 6.4 111 117-239 3-143 (206)
242 2ffh_A Protein (FFH); SRP54, s 97.2 0.0013 4.4E-08 65.4 9.5 118 115-240 98-251 (425)
243 1nij_A Hypothetical protein YJ 97.1 0.0021 7.2E-08 61.4 10.2 25 114-138 3-27 (318)
244 2rcn_A Probable GTPase ENGC; Y 97.0 0.00035 1.2E-08 67.8 3.8 25 116-140 216-240 (358)
245 3ney_A 55 kDa erythrocyte memb 97.0 0.00014 4.9E-09 64.6 0.6 59 112-172 16-75 (197)
246 1vma_A Cell division protein F 97.0 0.0032 1.1E-07 59.8 10.0 21 116-136 105-125 (306)
247 2og2_A Putative signal recogni 96.9 0.0051 1.7E-07 59.7 11.2 122 115-240 157-317 (359)
248 2yv5_A YJEQ protein; hydrolase 96.9 0.00086 2.9E-08 63.7 5.7 23 116-139 166-188 (302)
249 3b9q_A Chloroplast SRP recepto 96.9 0.0041 1.4E-07 59.0 10.3 22 116-137 101-122 (302)
250 1u0l_A Probable GTPase ENGC; p 96.8 0.00085 2.9E-08 63.6 4.5 25 116-140 170-194 (301)
251 3end_A Light-independent proto 96.8 0.005 1.7E-07 58.1 9.7 67 162-238 156-225 (307)
252 3cwq_A Para family chromosome 96.7 0.0042 1.4E-07 55.4 7.9 111 117-240 2-134 (209)
253 1ls1_A Signal recognition part 96.7 0.0054 1.9E-07 57.9 8.9 118 115-240 98-251 (295)
254 1bif_A 6-phosphofructo-2-kinas 96.6 0.00026 8.9E-09 71.5 -1.1 111 115-233 39-156 (469)
255 4ido_A Atlastin-1; GTPase, GTP 96.4 0.0083 2.8E-07 59.8 8.9 24 113-136 65-88 (457)
256 1kgd_A CASK, peripheral plasma 96.3 0.002 7E-08 55.9 3.1 24 115-138 5-28 (180)
257 3kjh_A CO dehydrogenase/acetyl 96.2 0.0031 1.1E-07 57.2 4.0 65 161-237 130-194 (254)
258 1ex7_A Guanylate kinase; subst 96.1 0.00099 3.4E-08 58.6 0.4 38 117-154 3-41 (186)
259 1ye8_A Protein THEP1, hypothet 96.1 0.0024 8.3E-08 55.6 2.6 22 117-138 2-23 (178)
260 3ea0_A ATPase, para family; al 96.0 0.072 2.4E-06 47.9 12.1 67 163-240 119-186 (245)
261 1lvg_A Guanylate kinase, GMP k 95.9 0.0029 1E-07 55.9 2.4 22 117-138 6-27 (198)
262 3cio_A ETK, tyrosine-protein k 95.8 0.057 1.9E-06 50.9 11.1 65 163-239 214-279 (299)
263 1zp6_A Hypothetical protein AT 95.8 0.0056 1.9E-07 53.2 3.7 23 116-138 10-32 (191)
264 3la6_A Tyrosine-protein kinase 95.8 0.053 1.8E-06 50.7 10.5 66 163-240 202-268 (286)
265 1znw_A Guanylate kinase, GMP k 95.7 0.0042 1.4E-07 55.2 2.6 22 117-138 22-43 (207)
266 4b4t_L 26S protease subunit RP 95.7 0.045 1.5E-06 54.4 10.2 23 116-138 216-238 (437)
267 3tr0_A Guanylate kinase, GMP k 95.7 0.005 1.7E-07 54.1 3.0 23 116-138 8-30 (205)
268 1z6g_A Guanylate kinase; struc 95.7 0.0042 1.5E-07 55.8 2.6 24 115-138 23-46 (218)
269 1jbk_A CLPB protein; beta barr 95.7 0.016 5.4E-07 49.5 6.0 23 116-138 44-66 (195)
270 3a00_A Guanylate kinase, GMP k 95.6 0.0044 1.5E-07 54.0 2.3 22 117-138 3-24 (186)
271 3c8u_A Fructokinase; YP_612366 95.6 0.0053 1.8E-07 54.5 2.9 25 114-138 21-45 (208)
272 2oze_A ORF delta'; para, walke 95.6 0.083 2.8E-06 49.3 11.2 68 162-240 154-226 (298)
273 3tau_A Guanylate kinase, GMP k 95.6 0.0061 2.1E-07 54.2 3.0 24 116-139 9-32 (208)
274 3q9l_A Septum site-determining 95.6 0.049 1.7E-06 49.5 9.3 66 162-238 113-185 (260)
275 1s96_A Guanylate kinase, GMP k 95.6 0.0059 2E-07 55.0 2.9 24 116-139 17-40 (219)
276 3tif_A Uncharacterized ABC tra 95.5 0.0066 2.3E-07 55.3 3.2 24 116-139 32-55 (235)
277 2pcj_A ABC transporter, lipopr 95.5 0.0071 2.4E-07 54.6 3.4 23 117-139 32-54 (224)
278 4gp7_A Metallophosphoesterase; 95.5 0.0074 2.5E-07 51.9 3.1 21 117-137 11-31 (171)
279 2onk_A Molybdate/tungstate ABC 95.3 0.0089 3E-07 54.6 3.2 24 116-139 25-48 (240)
280 2cbz_A Multidrug resistance-as 95.3 0.0089 3E-07 54.5 3.2 24 116-139 32-55 (237)
281 3asz_A Uridine kinase; cytidin 95.3 0.0088 3E-07 52.9 3.0 23 116-138 7-29 (211)
282 2j41_A Guanylate kinase; GMP, 95.3 0.0089 3E-07 52.5 3.0 24 116-139 7-30 (207)
283 1b0u_A Histidine permease; ABC 95.2 0.0094 3.2E-07 55.2 3.2 24 116-139 33-56 (262)
284 1mv5_A LMRA, multidrug resista 95.2 0.0096 3.3E-07 54.4 3.2 24 116-139 29-52 (243)
285 3gfo_A Cobalt import ATP-bindi 95.2 0.0095 3.3E-07 55.6 3.2 24 116-139 35-58 (275)
286 1g6h_A High-affinity branched- 95.2 0.0097 3.3E-07 54.9 3.2 24 116-139 34-57 (257)
287 2ff7_A Alpha-hemolysin translo 95.2 0.0097 3.3E-07 54.6 3.2 24 116-139 36-59 (247)
288 4g1u_C Hemin import ATP-bindin 95.2 0.0099 3.4E-07 55.2 3.2 24 116-139 38-61 (266)
289 1htw_A HI0065; nucleotide-bind 95.2 0.0088 3E-07 51.0 2.6 24 116-139 34-57 (158)
290 2pze_A Cystic fibrosis transme 95.2 0.01 3.5E-07 53.8 3.2 24 116-139 35-58 (229)
291 1knq_A Gluconate kinase; ALFA/ 95.2 0.011 3.9E-07 50.5 3.4 23 115-137 8-30 (175)
292 1sgw_A Putative ABC transporte 95.2 0.0098 3.4E-07 53.4 3.0 23 117-139 37-59 (214)
293 2bbw_A Adenylate kinase 4, AK4 95.2 0.011 3.9E-07 53.7 3.5 21 116-136 28-48 (246)
294 1ji0_A ABC transporter; ATP bi 95.1 0.011 3.8E-07 54.0 3.2 23 117-139 34-56 (240)
295 2olj_A Amino acid ABC transpor 95.1 0.011 3.7E-07 54.8 3.2 24 116-139 51-74 (263)
296 2ghi_A Transport protein; mult 95.1 0.011 3.8E-07 54.6 3.2 23 116-138 47-69 (260)
297 2eyu_A Twitching motility prot 95.1 0.01 3.6E-07 54.9 3.0 25 114-138 24-48 (261)
298 2qi9_C Vitamin B12 import ATP- 95.1 0.011 3.9E-07 54.2 3.2 23 117-139 28-50 (249)
299 3lw7_A Adenylate kinase relate 95.1 0.012 4E-07 49.9 3.1 20 116-135 2-21 (179)
300 2d2e_A SUFC protein; ABC-ATPas 95.0 0.012 4E-07 54.1 3.2 22 117-138 31-52 (250)
301 1vpl_A ABC transporter, ATP-bi 95.0 0.012 4E-07 54.4 3.2 24 116-139 42-65 (256)
302 2qor_A Guanylate kinase; phosp 95.0 0.011 3.8E-07 52.1 3.0 24 114-137 11-34 (204)
303 2ixe_A Antigen peptide transpo 95.0 0.012 4E-07 54.8 3.2 24 116-139 46-69 (271)
304 4b4t_J 26S protease regulatory 95.0 0.19 6.6E-06 49.2 11.9 22 117-138 184-205 (405)
305 2zu0_C Probable ATP-dependent 95.0 0.012 4.2E-07 54.6 3.2 23 116-138 47-69 (267)
306 2ihy_A ABC transporter, ATP-bi 95.0 0.012 4.2E-07 55.0 3.2 24 116-139 48-71 (279)
307 3t15_A Ribulose bisphosphate c 95.0 0.043 1.5E-06 51.4 7.0 21 117-137 38-58 (293)
308 1kag_A SKI, shikimate kinase I 95.0 0.01 3.4E-07 50.6 2.4 21 117-137 6-26 (173)
309 3b85_A Phosphate starvation-in 95.0 0.0089 3E-07 53.4 2.1 22 117-138 24-45 (208)
310 4eun_A Thermoresistant glucoki 95.0 0.012 4E-07 51.8 2.9 22 116-137 30-51 (200)
311 2qz4_A Paraplegin; AAA+, SPG7, 94.9 0.17 5.9E-06 45.8 10.9 22 116-137 40-61 (262)
312 1np6_A Molybdopterin-guanine d 94.9 0.015 5.1E-07 50.3 3.3 24 115-138 6-29 (174)
313 2nq2_C Hypothetical ABC transp 94.9 0.013 4.6E-07 53.9 3.2 23 117-139 33-55 (253)
314 2yz2_A Putative ABC transporte 94.9 0.014 4.8E-07 54.2 3.2 24 116-139 34-57 (266)
315 2bdt_A BH3686; alpha-beta prot 94.9 0.012 4.1E-07 51.1 2.6 21 117-137 4-24 (189)
316 2i3b_A HCR-ntpase, human cance 94.8 0.01 3.6E-07 52.1 2.2 22 117-138 3-24 (189)
317 3kb2_A SPBC2 prophage-derived 94.8 0.015 5E-07 49.3 3.0 21 117-137 3-23 (173)
318 2v9p_A Replication protein E1; 94.8 0.014 4.6E-07 55.4 3.0 25 114-138 125-149 (305)
319 1y63_A LMAJ004144AAA protein; 94.8 0.019 6.7E-07 49.7 3.8 25 114-138 9-33 (184)
320 2wwf_A Thymidilate kinase, put 94.8 0.022 7.6E-07 50.1 4.2 24 114-137 9-32 (212)
321 1d2n_A N-ethylmaleimide-sensit 94.7 0.14 4.9E-06 46.9 9.8 24 114-137 63-86 (272)
322 2pjz_A Hypothetical protein ST 94.7 0.017 5.7E-07 53.6 3.2 23 117-139 32-54 (263)
323 1kht_A Adenylate kinase; phosp 94.7 0.017 5.9E-07 49.8 3.2 22 116-137 4-25 (192)
324 4a74_A DNA repair and recombin 94.7 0.015 5.2E-07 51.8 2.8 22 116-137 26-47 (231)
325 2f1r_A Molybdopterin-guanine d 94.6 0.0084 2.9E-07 51.8 1.0 22 117-138 4-25 (171)
326 3lnc_A Guanylate kinase, GMP k 94.6 0.012 4.1E-07 53.0 2.1 23 116-138 28-51 (231)
327 2bbs_A Cystic fibrosis transme 94.6 0.019 6.4E-07 54.0 3.4 25 115-139 64-88 (290)
328 1qhx_A CPT, protein (chloramph 94.6 0.021 7.1E-07 48.8 3.5 22 116-137 4-25 (178)
329 2jeo_A Uridine-cytidine kinase 94.6 0.017 5.7E-07 52.7 3.0 24 114-137 24-47 (245)
330 3n70_A Transport activator; si 94.6 0.03 1E-06 46.5 4.3 23 116-138 25-47 (145)
331 3aez_A Pantothenate kinase; tr 94.6 0.017 5.9E-07 54.9 3.1 25 114-138 89-113 (312)
332 4b4t_K 26S protease regulatory 94.6 0.068 2.3E-06 53.0 7.5 22 117-138 208-229 (428)
333 3fvq_A Fe(3+) IONS import ATP- 94.5 0.019 6.6E-07 55.6 3.4 24 116-139 31-54 (359)
334 3h4m_A Proteasome-activating n 94.5 0.1 3.4E-06 48.2 8.3 22 116-137 52-73 (285)
335 2qt1_A Nicotinamide riboside k 94.5 0.027 9.1E-07 49.6 4.2 24 115-138 21-44 (207)
336 1ly1_A Polynucleotide kinase; 94.5 0.019 6.7E-07 48.9 3.2 21 117-137 4-24 (181)
337 3uie_A Adenylyl-sulfate kinase 94.5 0.018 6E-07 50.7 2.9 24 115-138 25-48 (200)
338 3jvv_A Twitching mobility prot 94.5 0.017 5.8E-07 56.0 3.0 25 114-138 122-146 (356)
339 3nh6_A ATP-binding cassette SU 94.5 0.012 4.2E-07 55.7 1.9 25 115-139 80-104 (306)
340 3ec2_A DNA replication protein 94.5 0.014 4.7E-07 50.3 2.0 23 116-138 39-61 (180)
341 3iij_A Coilin-interacting nucl 94.5 0.024 8.1E-07 48.7 3.5 23 114-136 10-32 (180)
342 2rhm_A Putative kinase; P-loop 94.4 0.024 8.2E-07 49.0 3.5 22 116-137 6-27 (193)
343 2plr_A DTMP kinase, probable t 94.4 0.023 7.7E-07 49.9 3.4 23 115-137 4-26 (213)
344 1cke_A CK, MSSA, protein (cyti 94.4 0.019 6.6E-07 51.2 2.9 22 116-137 6-27 (227)
345 4b4t_H 26S protease regulatory 94.4 0.11 3.9E-06 51.7 8.6 22 117-138 245-266 (467)
346 3zvl_A Bifunctional polynucleo 94.4 0.11 3.8E-06 51.3 8.6 23 115-137 258-280 (416)
347 3t61_A Gluconokinase; PSI-biol 94.4 0.023 7.9E-07 49.8 3.3 22 116-137 19-40 (202)
348 2if2_A Dephospho-COA kinase; a 94.4 0.02 6.7E-07 50.3 2.8 21 117-137 3-23 (204)
349 2ehv_A Hypothetical protein PH 94.3 0.022 7.4E-07 51.5 3.1 22 116-137 31-52 (251)
350 1tev_A UMP-CMP kinase; ploop, 94.3 0.023 7.8E-07 49.1 3.1 23 115-137 3-25 (196)
351 1z47_A CYSA, putative ABC-tran 94.3 0.022 7.5E-07 55.1 3.2 24 116-139 42-65 (355)
352 1nks_A Adenylate kinase; therm 94.3 0.024 8.2E-07 48.9 3.2 21 117-137 3-23 (194)
353 3vaa_A Shikimate kinase, SK; s 94.3 0.025 8.5E-07 49.6 3.3 22 116-137 26-47 (199)
354 4b4t_M 26S protease regulatory 94.3 0.11 3.8E-06 51.5 8.3 23 116-138 216-238 (434)
355 2cdn_A Adenylate kinase; phosp 94.3 0.03 1E-06 49.1 3.8 24 114-137 19-42 (201)
356 1sq5_A Pantothenate kinase; P- 94.2 0.025 8.6E-07 53.5 3.5 24 114-137 79-102 (308)
357 3tui_C Methionine import ATP-b 94.2 0.023 7.9E-07 55.1 3.2 25 115-139 54-78 (366)
358 2yyz_A Sugar ABC transporter, 94.2 0.023 7.9E-07 55.0 3.2 24 116-139 30-53 (359)
359 1xjc_A MOBB protein homolog; s 94.2 0.027 9.2E-07 48.5 3.3 23 115-137 4-26 (169)
360 1rz3_A Hypothetical protein rb 94.2 0.028 9.4E-07 49.5 3.4 24 114-137 21-44 (201)
361 2chg_A Replication factor C sm 94.2 0.096 3.3E-06 45.7 7.0 21 117-137 40-60 (226)
362 2jaq_A Deoxyguanosine kinase; 94.2 0.025 8.5E-07 49.3 3.1 21 117-137 2-22 (205)
363 2it1_A 362AA long hypothetical 94.2 0.024 8.3E-07 55.0 3.2 24 116-139 30-53 (362)
364 3rlf_A Maltose/maltodextrin im 94.1 0.024 8.4E-07 55.3 3.2 24 116-139 30-53 (381)
365 1jjv_A Dephospho-COA kinase; P 94.1 0.026 9E-07 49.6 3.2 21 117-137 4-24 (206)
366 1lw7_A Transcriptional regulat 94.1 0.02 6.9E-07 55.5 2.6 24 115-138 170-193 (365)
367 1g29_1 MALK, maltose transport 94.1 0.025 8.6E-07 55.1 3.2 24 116-139 30-53 (372)
368 3cm0_A Adenylate kinase; ATP-b 94.1 0.026 8.9E-07 48.6 3.0 22 116-137 5-26 (186)
369 4b4t_I 26S protease regulatory 94.1 0.13 4.5E-06 50.7 8.4 23 116-138 217-239 (437)
370 2pt7_A CAG-ALFA; ATPase, prote 94.1 0.023 8E-07 54.4 3.0 23 116-138 172-194 (330)
371 2c95_A Adenylate kinase 1; tra 94.1 0.032 1.1E-06 48.3 3.7 24 114-137 8-31 (196)
372 2gza_A Type IV secretion syste 94.1 0.025 8.5E-07 54.9 3.1 23 116-138 176-198 (361)
373 1v43_A Sugar-binding transport 94.1 0.026 8.8E-07 55.0 3.2 24 116-139 38-61 (372)
374 2v1u_A Cell division control p 94.1 0.14 4.8E-06 49.1 8.5 24 115-138 44-67 (387)
375 2vp4_A Deoxynucleoside kinase; 94.0 0.028 9.7E-07 50.6 3.2 25 114-138 19-43 (230)
376 2kjq_A DNAA-related protein; s 94.0 0.02 6.9E-07 48.1 2.0 23 116-138 37-59 (149)
377 2v54_A DTMP kinase, thymidylat 94.0 0.031 1.1E-06 48.8 3.3 24 115-138 4-27 (204)
378 2xj4_A MIPZ; replication, cell 94.0 0.039 1.3E-06 51.5 4.1 33 163-206 104-136 (286)
379 2yvu_A Probable adenylyl-sulfa 93.9 0.038 1.3E-06 47.7 3.8 24 114-137 12-35 (186)
380 1uf9_A TT1252 protein; P-loop, 93.9 0.035 1.2E-06 48.4 3.6 25 114-138 7-31 (203)
381 1nn5_A Similar to deoxythymidy 93.9 0.036 1.2E-06 48.8 3.7 24 114-137 8-31 (215)
382 3gd7_A Fusion complex of cysti 93.9 0.03 1E-06 54.9 3.4 24 116-139 48-71 (390)
383 3tqc_A Pantothenate kinase; bi 93.9 0.03 1E-06 53.4 3.3 24 114-137 91-114 (321)
384 2ewv_A Twitching motility prot 93.9 0.026 9E-07 55.0 2.9 25 114-138 135-159 (372)
385 1ukz_A Uridylate kinase; trans 93.9 0.042 1.4E-06 48.1 4.0 24 114-137 14-37 (203)
386 3trf_A Shikimate kinase, SK; a 93.9 0.033 1.1E-06 48.0 3.2 21 116-136 6-26 (185)
387 1odf_A YGR205W, hypothetical 3 93.9 0.031 1.1E-06 52.5 3.3 24 114-137 30-53 (290)
388 3cf0_A Transitional endoplasmi 93.8 0.11 3.6E-06 48.9 7.0 22 116-137 50-71 (301)
389 1zd8_A GTP:AMP phosphotransfer 93.8 0.035 1.2E-06 49.8 3.4 22 115-136 7-28 (227)
390 3kta_A Chromosome segregation 93.8 0.036 1.2E-06 47.6 3.4 23 115-137 26-48 (182)
391 3fb4_A Adenylate kinase; psych 93.7 0.033 1.1E-06 49.3 3.1 21 117-137 2-22 (216)
392 1p9r_A General secretion pathw 93.7 0.029 9.9E-07 55.5 2.9 25 114-138 166-190 (418)
393 4e22_A Cytidylate kinase; P-lo 93.7 0.039 1.3E-06 50.5 3.6 22 115-136 27-48 (252)
394 3d31_A Sulfate/molybdate ABC t 93.7 0.022 7.7E-07 54.9 2.0 24 116-139 27-50 (348)
395 2vli_A Antibiotic resistance p 93.7 0.025 8.6E-07 48.5 2.2 23 114-136 4-26 (183)
396 2x8a_A Nuclear valosin-contain 93.7 0.026 8.9E-07 52.5 2.3 21 118-138 47-67 (274)
397 1aky_A Adenylate kinase; ATP:A 93.7 0.038 1.3E-06 49.2 3.3 23 115-137 4-26 (220)
398 3dl0_A Adenylate kinase; phosp 93.6 0.036 1.2E-06 49.1 3.1 21 117-137 2-22 (216)
399 1gvn_B Zeta; postsegregational 93.6 0.04 1.4E-06 51.6 3.5 24 114-137 32-55 (287)
400 1zak_A Adenylate kinase; ATP:A 93.5 0.039 1.3E-06 49.2 3.2 22 116-137 6-27 (222)
401 1qf9_A UMP/CMP kinase, protein 93.5 0.053 1.8E-06 46.6 3.9 22 116-137 7-28 (194)
402 1ixz_A ATP-dependent metallopr 93.5 0.031 1E-06 51.0 2.4 21 118-138 52-72 (254)
403 1xwi_A SKD1 protein; VPS4B, AA 93.5 0.25 8.6E-06 46.8 8.9 22 116-137 46-67 (322)
404 2bwj_A Adenylate kinase 5; pho 93.5 0.04 1.4E-06 47.9 3.1 22 116-137 13-34 (199)
405 2oap_1 GSPE-2, type II secreti 93.4 0.036 1.2E-06 56.3 3.1 22 117-138 262-283 (511)
406 1oxx_K GLCV, glucose, ABC tran 93.4 0.022 7.5E-07 55.1 1.3 24 116-139 32-55 (353)
407 2pez_A Bifunctional 3'-phospho 93.4 0.045 1.6E-06 46.9 3.2 23 115-137 5-27 (179)
408 3b9p_A CG5977-PA, isoform A; A 93.4 0.38 1.3E-05 44.5 9.9 22 116-137 55-76 (297)
409 1gtv_A TMK, thymidylate kinase 93.3 0.024 8.3E-07 49.9 1.4 21 117-137 2-22 (214)
410 3be4_A Adenylate kinase; malar 93.3 0.043 1.5E-06 48.8 3.0 23 115-137 5-27 (217)
411 3qf7_A RAD50; ABC-ATPase, ATPa 93.3 0.16 5.3E-06 49.3 7.2 22 115-136 23-44 (365)
412 3a4m_A L-seryl-tRNA(SEC) kinas 93.2 0.046 1.6E-06 50.2 3.2 23 115-137 4-26 (260)
413 3tlx_A Adenylate kinase 2; str 93.2 0.048 1.6E-06 49.6 3.3 24 114-137 28-51 (243)
414 2iyv_A Shikimate kinase, SK; t 93.2 0.042 1.4E-06 47.3 2.7 21 117-137 4-24 (184)
415 3eie_A Vacuolar protein sortin 93.2 0.16 5.6E-06 48.0 7.1 22 116-137 52-73 (322)
416 1via_A Shikimate kinase; struc 93.2 0.042 1.4E-06 46.9 2.7 21 117-137 6-26 (175)
417 2w0m_A SSO2452; RECA, SSPF, un 93.1 0.038 1.3E-06 49.1 2.4 23 116-138 24-46 (235)
418 1e4v_A Adenylate kinase; trans 93.1 0.053 1.8E-06 48.0 3.3 21 117-137 2-22 (214)
419 2pt5_A Shikimate kinase, SK; a 93.1 0.05 1.7E-06 45.9 3.0 21 117-137 2-22 (168)
420 3umf_A Adenylate kinase; rossm 93.0 0.065 2.2E-06 48.0 3.8 24 114-137 28-51 (217)
421 1cr0_A DNA primase/helicase; R 93.0 0.042 1.4E-06 51.4 2.6 23 116-138 36-58 (296)
422 2z0h_A DTMP kinase, thymidylat 93.0 0.052 1.8E-06 47.0 3.1 21 117-137 2-22 (197)
423 2pbr_A DTMP kinase, thymidylat 92.9 0.053 1.8E-06 46.8 3.0 21 117-137 2-22 (195)
424 2npi_A Protein CLP1; CLP1-PCF1 92.9 0.044 1.5E-06 54.9 2.8 25 114-138 137-161 (460)
425 1vht_A Dephospho-COA kinase; s 92.9 0.056 1.9E-06 48.0 3.2 22 116-137 5-26 (218)
426 2f6r_A COA synthase, bifunctio 92.9 0.072 2.5E-06 49.6 4.0 23 114-136 74-96 (281)
427 3vfd_A Spastin; ATPase, microt 92.9 0.3 1E-05 47.5 8.7 22 116-137 149-170 (389)
428 1iy2_A ATP-dependent metallopr 92.8 0.043 1.5E-06 50.8 2.4 21 118-138 76-96 (278)
429 2p5t_B PEZT; postsegregational 92.8 0.046 1.6E-06 50.0 2.5 24 114-137 31-54 (253)
430 1in4_A RUVB, holliday junction 92.8 0.043 1.5E-06 52.5 2.3 23 116-138 52-74 (334)
431 1sxj_A Activator 1 95 kDa subu 92.7 0.29 1E-05 49.6 8.6 22 116-137 78-99 (516)
432 3hu3_A Transitional endoplasmi 92.7 0.12 4.3E-06 52.1 5.7 22 116-137 239-260 (489)
433 3ozx_A RNAse L inhibitor; ATP 92.7 0.07 2.4E-06 54.6 3.9 23 117-139 27-49 (538)
434 1e6c_A Shikimate kinase; phosp 92.7 0.055 1.9E-06 45.8 2.7 21 117-137 4-24 (173)
435 1ak2_A Adenylate kinase isoenz 92.6 0.07 2.4E-06 48.0 3.5 23 115-137 16-38 (233)
436 1f2t_A RAD50 ABC-ATPase; DNA d 92.6 0.067 2.3E-06 44.8 3.1 22 115-136 23-44 (149)
437 3sr0_A Adenylate kinase; phosp 92.5 0.068 2.3E-06 47.5 3.2 21 117-137 2-22 (206)
438 2obl_A ESCN; ATPase, hydrolase 92.5 0.061 2.1E-06 51.8 3.1 27 113-139 69-95 (347)
439 2ze6_A Isopentenyl transferase 92.5 0.06 2E-06 49.3 2.9 21 117-137 3-23 (253)
440 2b8t_A Thymidine kinase; deoxy 92.5 0.15 5.3E-06 45.8 5.5 23 114-136 11-33 (223)
441 2p65_A Hypothetical protein PF 92.5 0.056 1.9E-06 45.9 2.5 24 115-138 43-66 (187)
442 3bos_A Putative DNA replicatio 92.5 0.074 2.5E-06 47.3 3.4 23 115-137 52-74 (242)
443 2cvh_A DNA repair and recombin 92.4 0.067 2.3E-06 47.1 3.0 22 116-137 21-42 (220)
444 1m7g_A Adenylylsulfate kinase; 92.4 0.075 2.6E-06 46.9 3.3 23 115-137 25-47 (211)
445 3u61_B DNA polymerase accessor 92.4 0.32 1.1E-05 45.8 7.9 21 117-137 50-70 (324)
446 2xb4_A Adenylate kinase; ATP-b 92.4 0.07 2.4E-06 47.7 3.1 21 117-137 2-22 (223)
447 1yqt_A RNAse L inhibitor; ATP- 92.4 0.066 2.2E-06 54.8 3.2 24 116-139 48-71 (538)
448 3b60_A Lipid A export ATP-bind 92.3 0.07 2.4E-06 55.1 3.4 24 116-139 370-393 (582)
449 4eaq_A DTMP kinase, thymidylat 92.3 0.088 3E-06 47.5 3.7 24 114-137 25-48 (229)
450 1uj2_A Uridine-cytidine kinase 92.3 0.076 2.6E-06 48.4 3.2 24 114-137 21-44 (252)
451 1iqp_A RFCS; clamp loader, ext 92.2 0.18 6.1E-06 47.2 5.9 23 116-138 47-69 (327)
452 3r20_A Cytidylate kinase; stru 92.2 0.079 2.7E-06 48.0 3.2 23 114-136 8-30 (233)
453 3euj_A Chromosome partition pr 92.1 0.061 2.1E-06 54.1 2.6 22 116-137 30-51 (483)
454 1n0w_A DNA repair protein RAD5 92.1 0.066 2.3E-06 48.0 2.6 23 116-138 25-47 (243)
455 3cf2_A TER ATPase, transitiona 92.1 0.22 7.5E-06 53.2 7.0 23 116-138 239-261 (806)
456 3nwj_A ATSK2; P loop, shikimat 92.0 0.077 2.6E-06 48.6 2.9 23 115-137 48-70 (250)
457 2w58_A DNAI, primosome compone 92.0 0.089 3E-06 45.9 3.3 22 116-137 55-76 (202)
458 1lv7_A FTSH; alpha/beta domain 91.9 0.074 2.5E-06 48.4 2.8 21 117-137 47-67 (257)
459 2dpy_A FLII, flagellum-specifi 91.9 0.085 2.9E-06 52.5 3.3 28 111-138 153-180 (438)
460 1zuh_A Shikimate kinase; alpha 91.8 0.089 3.1E-06 44.4 3.0 22 116-137 8-29 (168)
461 3b5x_A Lipid A export ATP-bind 91.8 0.077 2.6E-06 54.8 3.0 24 116-139 370-393 (582)
462 3j16_B RLI1P; ribosome recycli 91.8 0.083 2.8E-06 54.8 3.2 24 116-139 104-127 (608)
463 1svm_A Large T antigen; AAA+ f 91.8 0.082 2.8E-06 51.5 3.0 23 115-137 169-191 (377)
464 2qmh_A HPR kinase/phosphorylas 91.7 0.13 4.5E-06 45.4 3.9 26 116-141 35-60 (205)
465 2yl4_A ATP-binding cassette SU 91.6 0.071 2.4E-06 55.3 2.5 25 115-139 370-394 (595)
466 3qf4_B Uncharacterized ABC tra 91.6 0.076 2.6E-06 55.1 2.7 25 115-139 381-405 (598)
467 3ug7_A Arsenical pump-driving 91.5 6.5 0.00022 37.4 16.2 86 196-283 237-334 (349)
468 3bk7_A ABC transporter ATP-bin 91.5 0.093 3.2E-06 54.5 3.2 24 116-139 118-141 (607)
469 3tqf_A HPR(Ser) kinase; transf 91.5 0.14 4.7E-06 44.2 3.7 28 117-144 18-45 (181)
470 1q3t_A Cytidylate kinase; nucl 91.4 0.12 4E-06 46.6 3.5 24 114-137 15-38 (236)
471 3ozx_A RNAse L inhibitor; ATP 91.4 0.096 3.3E-06 53.5 3.2 23 117-139 296-318 (538)
472 3d8b_A Fidgetin-like protein 1 91.4 0.21 7.2E-06 48.1 5.4 22 116-137 118-139 (357)
473 1qvr_A CLPB protein; coiled co 91.3 0.41 1.4E-05 51.7 8.2 23 116-138 192-214 (854)
474 3k9g_A PF-32 protein; ssgcid, 91.3 0.42 1.4E-05 43.6 7.2 66 162-238 144-209 (267)
475 3qf4_A ABC transporter, ATP-bi 91.3 0.082 2.8E-06 54.7 2.5 25 115-139 369-393 (587)
476 4a82_A Cystic fibrosis transme 91.2 0.082 2.8E-06 54.6 2.5 25 115-139 367-391 (578)
477 3exa_A TRNA delta(2)-isopenten 91.2 0.12 4E-06 49.1 3.3 24 115-138 3-26 (322)
478 1yqt_A RNAse L inhibitor; ATP- 91.0 0.11 3.8E-06 53.1 3.2 24 116-139 313-336 (538)
479 3syl_A Protein CBBX; photosynt 91.0 0.16 5.4E-06 47.4 4.1 23 115-137 67-89 (309)
480 2grj_A Dephospho-COA kinase; T 91.0 0.13 4.4E-06 45.1 3.2 24 114-137 11-34 (192)
481 1nlf_A Regulatory protein REPA 91.0 0.12 4E-06 47.9 3.1 23 115-137 30-52 (279)
482 1tue_A Replication protein E1; 91.0 0.1 3.6E-06 46.3 2.6 21 117-137 60-80 (212)
483 3ake_A Cytidylate kinase; CMP 91.0 0.13 4.4E-06 44.8 3.2 21 117-137 4-24 (208)
484 1njg_A DNA polymerase III subu 90.9 0.13 4.5E-06 45.3 3.2 21 117-137 47-67 (250)
485 3zq6_A Putative arsenical pump 90.9 11 0.00036 35.4 17.6 83 197-281 223-317 (324)
486 2ce7_A Cell division protein F 90.8 0.49 1.7E-05 47.5 7.6 22 117-138 51-72 (476)
487 2zan_A Vacuolar protein sortin 90.8 0.56 1.9E-05 46.5 8.0 22 116-137 168-189 (444)
488 4fcw_A Chaperone protein CLPB; 90.7 0.16 5.6E-06 47.3 3.8 22 116-137 48-69 (311)
489 3bk7_A ABC transporter ATP-bin 90.6 0.13 4.3E-06 53.5 3.2 23 117-139 384-406 (607)
490 2qp9_X Vacuolar protein sortin 90.6 0.32 1.1E-05 46.7 6.0 22 117-138 86-107 (355)
491 3qks_A DNA double-strand break 90.6 0.14 4.8E-06 45.1 3.1 22 115-136 23-44 (203)
492 3pvs_A Replication-associated 90.6 0.63 2.2E-05 46.3 8.2 22 116-137 51-72 (447)
493 2ocp_A DGK, deoxyguanosine kin 90.5 0.16 5.4E-06 45.8 3.4 22 116-137 3-24 (241)
494 2dr3_A UPF0273 protein PH0284; 90.5 0.14 4.8E-06 45.8 3.1 22 116-137 24-45 (247)
495 1ltq_A Polynucleotide kinase; 90.5 0.14 4.7E-06 47.8 3.1 21 117-137 4-24 (301)
496 2qby_A CDC6 homolog 1, cell di 90.4 0.13 4.6E-06 49.1 3.0 24 115-138 45-68 (386)
497 1sxj_E Activator 1 40 kDa subu 90.4 0.11 3.6E-06 49.6 2.2 21 117-137 38-58 (354)
498 1ko7_A HPR kinase/phosphatase; 90.3 0.18 6.2E-06 47.7 3.7 30 116-145 145-174 (314)
499 3lv8_A DTMP kinase, thymidylat 90.3 0.18 6.2E-06 45.7 3.6 26 112-137 24-49 (236)
500 1fnn_A CDC6P, cell division co 90.2 0.13 4.4E-06 49.5 2.7 22 117-138 46-67 (389)
No 1
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=100.00 E-value=4e-59 Score=451.93 Aligned_cols=296 Identities=36% Similarity=0.591 Sum_probs=264.9
Q ss_pred CCCCCccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCC-CeeEEEEeCCCCchhh-hhhHhHHHHH
Q 014942 110 HPNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP-EYQMILYDTPGIIEKK-IHMLDSMMMK 187 (415)
Q Consensus 110 ~~~~~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~-~~~l~liDtpG~~~~~-~~~l~~~~~~ 187 (415)
+++...+.|+++|.||||||||+|+|++.++.+++..+++|++......... +.++.||||||+.... ...+...+..
T Consensus 5 ~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~ 84 (308)
T 3iev_A 5 HHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVE 84 (308)
T ss_dssp --CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHH
Confidence 4556778999999999999999999999999888999999999998888888 9999999999985321 1456677778
Q ss_pred HHHhhhcccceEEEEecCCCCCchHHHHH-HHHhcccCCCCCEEEEEeCCCCC-ChhHHHHHHHHHhhcC-CCccEEEcc
Q 014942 188 NVRSAGINADCIVVLVDACKAPERIDEIL-EEGVGDHKDKLPILLVLNKKDLI-KPGEIAKKLEWYEKFT-DVDEVIPVS 264 (415)
Q Consensus 188 ~~~~~~~~aD~ii~VvD~~~~~~~~~~~l-~~~l~~~~~~~piilV~NK~Dl~-~~~~~~~~~~~~~~~~-~~~~i~~vS 264 (415)
.+..++..+|++++|+|++++....+..+ .+.+.. .+.|+++|+||+|+. ...........+.... .+.+++++|
T Consensus 85 ~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~--~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~vS 162 (308)
T 3iev_A 85 IAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP--LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPIS 162 (308)
T ss_dssp HHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG--GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEECB
T ss_pred HHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh--cCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEEEe
Confidence 88889999999999999998776655555 666666 679999999999998 5666666666666555 567899999
Q ss_pred cCCCCCHHHHHHHHHhhCCCCCCCCCCCCccccCCchhHHHHHHHHHHHHhhcCCCCCceEEEEEEEEEecC--CCeeEE
Q 014942 265 AKYGHGVEDIRDWILTKLPLGPAYYPKFQDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTRP--TAKDFI 342 (415)
Q Consensus 265 A~~g~gv~eL~~~L~~~l~~~~~~~~~~~~~~t~~~~~~~i~eiireki~~~~~~eipys~~v~i~~~~~~~--~~~~~i 342 (415)
|++|.|+++|+++|.+.++++++.||. +.+++++.+++++|++||+++..+++|+||++.+.+..|++++ ++.+.|
T Consensus 163 A~~g~gv~~L~~~l~~~l~~~~~~~~~--~~~td~~~~~~~~e~irek~~~~~~~eiP~~~~v~i~~~~~~~~~~~~~~i 240 (308)
T 3iev_A 163 ALKGANLDELVKTILKYLPEGEPLFPE--DMITDLPLRLLAAEIVREKAMMLTREEVPTSIAVKINEIKPGDANPNMLVI 240 (308)
T ss_dssp TTTTBSHHHHHHHHHHHSCBCCCSSCT--TCCBCCCHHHHHHHHHHHHHHHTCCTTHHHHCEEEEEEEEECSSCTTSEEE
T ss_pred CCCCCCHHHHHHHHHHhCccCCCCCCc--ccccCCCHHHHHHHHHHHHHHhhhhhhcCCeeEEEeEEEEEccCCCCeEEE
Confidence 999999999999999999999999999 9999999999999999999999999999999999999999876 367899
Q ss_pred EEEEEEeeCCceeEEeecCChHHHHHHHHHHHHHHHHhCCcEEEEEEEEeCCCcccChHHHhhcCCc
Q 014942 343 QVEIVVEKNSQKIILIGKGGKALKLLATAARLDIEDFLQKKVYLEIEVKVKENWRQDEGLLKHYGYG 409 (415)
Q Consensus 343 ~~~~~~~r~~q~~iiiG~~g~~i~~i~~~ar~~l~~~~~~~v~l~l~vk~~~~w~~~~~~l~~~g~~ 409 (415)
.+.++|+|++||.|+||++|++||+|++.||++||++||++|||+|||||+++||++...|++|||.
T Consensus 241 ~a~i~ve~~~~k~i~ig~~g~~ik~i~~~ar~~~~~~~~~~v~l~l~vkv~~~w~~~~~~~~~~g~~ 307 (308)
T 3iev_A 241 KGEIIVDRENLKPIIIGKKGQRLKEIGKRARQELELILGRPVYLELWVKVVPDWRRRPEYVRLFGYA 307 (308)
T ss_dssp EEEEEESSGGGHHHHHCGGGHHHHHHHHHHHHHHHHHHTSCEEEEEEEEECTTGGGCHHHHHHTTCC
T ss_pred EEEEEEccCCcceEEEcCCcHHHHHHHHHHHHHHHHHhCCceEEEEEEEECCCcccCHHHHHHcCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999995
No 2
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=100.00 E-value=1.8e-58 Score=445.41 Aligned_cols=292 Identities=37% Similarity=0.563 Sum_probs=262.3
Q ss_pred CCccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhh
Q 014942 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (415)
Q Consensus 113 ~~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~ 192 (415)
.++++|+|+|+||||||||+|+|++.++.+++..++||++.+..++...+.++.||||||+.. ....+...+...+..+
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~-~~~~l~~~~~~~~~~~ 83 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHK-PMDALGEFMDQEVYEA 83 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCC-CCSHHHHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccc-hhhHHHHHHHHHHHHH
Confidence 578899999999999999999999999988889999999988888888899999999999853 4456667777888889
Q ss_pred hcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChhH-HHHHHHHHhhcCCCccEEEcccCCCCCH
Q 014942 193 GINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE-IAKKLEWYEKFTDVDEVIPVSAKYGHGV 271 (415)
Q Consensus 193 ~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~i~~vSA~~g~gv 271 (415)
++.+|++++|+|++++....+.++.+.+.....+.|+++|+||+|+..... +....+.+ .++.+++++||++|.|+
T Consensus 84 l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~---~~~~~~~~iSA~~g~gv 160 (301)
T 1wf3_A 84 LADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYPEEAMKAYHEL---LPEAEPRMLSALDERQV 160 (301)
T ss_dssp TSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSSHHHHHHHHHHT---STTSEEEECCTTCHHHH
T ss_pred HhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCCchHHHHHHHHHh---cCcCcEEEEeCCCCCCH
Confidence 999999999999998887777787776665323799999999999986544 43333333 45568999999999999
Q ss_pred HHHHHHHHhhCCCCCCCCCCCCccc-cCCchhHHHHHHHHHHHHhhcCCCCCceEEEEEEEEEecCCCeeEEEEEEEEee
Q 014942 272 EDIRDWILTKLPLGPAYYPKFQDIV-SEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTRPTAKDFIQVEIVVEK 350 (415)
Q Consensus 272 ~eL~~~L~~~l~~~~~~~~~~~~~~-t~~~~~~~i~eiireki~~~~~~eipys~~v~i~~~~~~~~~~~~i~~~~~~~r 350 (415)
++|+++|.+.++++++.||+ +.+ ++.|.++.++|++||+++..+.+++||++.+.+..|+.++++.++|.+.++|+|
T Consensus 161 ~~l~~~l~~~l~~~~~~y~~--~~~~td~~~~~~~~e~~Re~~~~~l~~eiP~~~~v~i~~~~~~~~~~~~i~~~i~ve~ 238 (301)
T 1wf3_A 161 AELKADLLALMPEGPFFYPE--DYAKSDQTFGEWVAEILREEAMKRLWHEVPYAVATKVEEVAERENGVLYIKAILYVER 238 (301)
T ss_dssp HHHHHHHHTTCCBCCCSSCT--TCCSBSSCHHHHHHHHHHHHHHHTCCTTHHHHCEEEEEEEEEETTTEEEEEEEEEESS
T ss_pred HHHHHHHHHhcccCCCCCCc--ccccCCCCHHHHHHHHHHHHHHHHhhcccCceEEEEEEEEEecCCCeEEEEEEEEEee
Confidence 99999999999999999998 888 999999999999999999999999999999999999987677899999999999
Q ss_pred CCceeEEeecCChHHHHHHHHHHHHHHHHhCCcEEEEEEEEeCCCcccChHHHhhcCCcc
Q 014942 351 NSQKIILIGKGGKALKLLATAARLDIEDFLQKKVYLEIEVKVKENWRQDEGLLKHYGYGG 410 (415)
Q Consensus 351 ~~q~~iiiG~~g~~i~~i~~~ar~~l~~~~~~~v~l~l~vk~~~~w~~~~~~l~~~g~~~ 410 (415)
++|+.|+||++|.+||+|+.+||++||++|+++|||+|||||+++||++...|++|||..
T Consensus 239 ~~~k~iiig~~g~~lk~i~~~ar~~~~~~~~~~v~l~l~vkv~~~w~~~~~~~~~~g~~~ 298 (301)
T 1wf3_A 239 PSQKAIVIGEGGRKIKEIGQATRKQLEALLGKKVYLDLEVKVYPDWRKDPEALRELGYRS 298 (301)
T ss_dssp HHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTSEEEEEEEEEECTTGGGCHHHHHHHTCCC
T ss_pred CCceEEEEeCCchHHHHHHHHHHHHHHHHHCCceEEEEEEEECCCcccCHHHHHHcCCCc
Confidence 999999999999999999999999999999999999999999999999999999999964
No 3
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=100.00 E-value=2.7e-55 Score=423.73 Aligned_cols=295 Identities=32% Similarity=0.568 Sum_probs=258.9
Q ss_pred CCCccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHh
Q 014942 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (415)
Q Consensus 112 ~~~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~ 191 (415)
..++++|+|+|++|||||||+|+|++.++.+++..+++|++...+++...+.++.+|||||+.......+...+...+..
T Consensus 5 ~~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~ 84 (301)
T 1ega_A 5 KSYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASS 84 (301)
T ss_dssp CCEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTS
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHH
Confidence 35778999999999999999999999999888889999998888888888899999999998423444555556566677
Q ss_pred hhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCC-hhHHHHHHHHHhhcCCCccEEEcccCCCCC
Q 014942 192 AGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK-PGEIAKKLEWYEKFTDVDEVIPVSAKYGHG 270 (415)
Q Consensus 192 ~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~-~~~~~~~~~~~~~~~~~~~i~~vSA~~g~g 270 (415)
++..+|++++|+|+++ ....+.++.+.+.. .+.|+++|+||+|+.. ...+......+....++..++++||++|.|
T Consensus 85 ~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~--~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~ 161 (301)
T 1ega_A 85 SIGDVELVIFVVEGTR-WTPDDEMVLNKLRE--GKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLN 161 (301)
T ss_dssp CCCCEEEEEEEEETTC-CCHHHHHHHHHHHS--SSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTT
T ss_pred HHhcCCEEEEEEeCCC-CCHHHHHHHHHHHh--cCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCC
Confidence 8899999999999987 77777777777765 6799999999999987 455555556565555556799999999999
Q ss_pred HHHHHHHHHhhCCCCCCCCCCCCccccCCchhHHHHHHHHHHHHhhcCCCCCceEEEEEEEEEecCCCeeEEEEEEEEee
Q 014942 271 VEDIRDWILTKLPLGPAYYPKFQDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTRPTAKDFIQVEIVVEK 350 (415)
Q Consensus 271 v~eL~~~L~~~l~~~~~~~~~~~~~~t~~~~~~~i~eiireki~~~~~~eipys~~v~i~~~~~~~~~~~~i~~~~~~~r 350 (415)
+++|++.|.+.++++++.||. +.+++.|.++.++|++||+++..+.+++||++.+.+..|.++.++.++|.+.++|+|
T Consensus 162 v~~l~~~i~~~l~~~~~~~~~--~~~~d~~~~~~~~e~~re~l~~~l~~e~p~~~~v~i~~~~~~~~~~~~i~~~i~v~~ 239 (301)
T 1ega_A 162 VDTIAAIVRKHLPEATHHFPE--DYITDRSQRFMASEIIREKLMRFLGAELPYSVTVEIERFVSNERGGYDINGLILVER 239 (301)
T ss_dssp HHHHHHHHHTTCCBCCCSSCT--TCCSCCSHHHHHHHHHHHHHHHHHGGGCCTTEEEEEEEEECCSSCSEEEEEEEEESS
T ss_pred HHHHHHHHHHhCCcCCCCCCc--cccCCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEEEEEecCCCeEEEEEEEEEEE
Confidence 999999999999999999998 899999999999999999999999999999999999999976667889999999999
Q ss_pred CCceeEEeecCChHHHHHHHHHHHHHHHHhCCcEEEEEEEEeCCCcccChHHHhhcCCccc
Q 014942 351 NSQKIILIGKGGKALKLLATAARLDIEDFLQKKVYLEIEVKVKENWRQDEGLLKHYGYGGQ 411 (415)
Q Consensus 351 ~~q~~iiiG~~g~~i~~i~~~ar~~l~~~~~~~v~l~l~vk~~~~w~~~~~~l~~~g~~~~ 411 (415)
++||+|+||++|.+||+|+.+||.+||++||++|+|+|||||+++||+++..|++|||..+
T Consensus 240 ~~~k~i~ig~~G~~~k~ig~~ar~~i~~~~~~~v~l~l~vkv~~~w~~~~~~~~~~g~~~~ 300 (301)
T 1ega_A 240 EGQKKMVIGNKGAKIKTIGIEARKDMQEMFEAPVHLELWVKVKSGWADDERALRSLGYVDD 300 (301)
T ss_dssp HHHHHHHHCGGGHHHHHHHHHHHHHHHHHTTSCEEEEEEEEETTCCCHHHHHHTTC-----
T ss_pred CCceEEEECCCcHHHHHHHHHHHHHHHHHHCCCeEEEEEEEECCCcccCHHHHHHcCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999654
No 4
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.91 E-value=2.3e-24 Score=186.43 Aligned_cols=160 Identities=26% Similarity=0.340 Sum_probs=116.1
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhcc
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (415)
++|+++|.+|||||||+|+|.+..+..+...+++|.+.....+...+..+.+|||||... ...+...+...+..++..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--~~~~~~~~~~~~~~~~~~ 79 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWS--GDKWEKKIQEKVDRALED 79 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCS--SSSCCHHHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCC--ccchHHHHHHHHHHHHHh
Confidence 489999999999999999999988766677788887777777777778999999999642 112333344556667899
Q ss_pred cceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHHHHHHHhhcCCCccEEEcccCCCCCHHHHH
Q 014942 196 ADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIR 275 (415)
Q Consensus 196 aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gv~eL~ 275 (415)
+|++++|+|++++......++...+.. .+.|+++|+||+|+..... ....+. ..+..+++++||++|.|+++++
T Consensus 80 ~~~~i~v~d~~~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~---~~~~~~-~~~~~~~~~~Sa~~~~gv~~l~ 153 (161)
T 2dyk_A 80 AEVVLFAVDGRAELTQADYEVAEYLRR--KGKPVILVATKVDDPKHEL---YLGPLY-GLGFGDPIPTSSEHARGLEELL 153 (161)
T ss_dssp CSEEEEEEESSSCCCHHHHHHHHHHHH--HTCCEEEEEECCCSGGGGG---GCGGGG-GGSSCSCEECBTTTTBSHHHHH
T ss_pred CCEEEEEEECCCcccHhHHHHHHHHHh--cCCCEEEEEECcccccchH---hHHHHH-hCCCCCeEEEecccCCChHHHH
Confidence 999999999998877777777776665 6799999999999975421 111222 2234478999999999999999
Q ss_pred HHHHhhCC
Q 014942 276 DWILTKLP 283 (415)
Q Consensus 276 ~~L~~~l~ 283 (415)
++|.+.+|
T Consensus 154 ~~l~~~l~ 161 (161)
T 2dyk_A 154 EAIWERLP 161 (161)
T ss_dssp HHHHHHCC
T ss_pred HHHHHhCc
Confidence 99998874
No 5
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.91 E-value=1.4e-23 Score=192.14 Aligned_cols=171 Identities=22% Similarity=0.216 Sum_probs=125.3
Q ss_pred CCccEEEEEecCCCCHHHHHHHHhCCc-eeeeeCCCCceEEeEEEEEe-CCCeeEEEEeCCCCchhhh-hhHhH---HHH
Q 014942 113 HKSGYVAVLGKPNVGKSTLANQMIGQK-LSIVTNKPQTTRHRILGICS-GPEYQMILYDTPGIIEKKI-HMLDS---MMM 186 (415)
Q Consensus 113 ~~~~~V~ivG~~~vGKSSLln~l~~~~-~~~~~~~~~tt~~~~~~~~~-~~~~~l~liDtpG~~~~~~-~~l~~---~~~ 186 (415)
.+.++|+|+|.+|||||||+|+|++.. ...++..+++|......... ..+..+.||||||+..... ..... .+.
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 106 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLL 106 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHH
Confidence 356799999999999999999999987 45677888888876655554 6678999999999743110 00011 122
Q ss_pred HHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHHHH----HHHhhc-----CCC
Q 014942 187 KNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKL----EWYEKF-----TDV 257 (415)
Q Consensus 187 ~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~~~----~~~~~~-----~~~ 257 (415)
..+......+|++++|+|++++.......+...+.. .+.|+++|+||+|+.......... +.+... ...
T Consensus 107 ~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~--~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 184 (223)
T 4dhe_A 107 SSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAP--TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYAGK 184 (223)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGG--GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCCSC
T ss_pred HHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHh--cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccCCC
Confidence 222233455899999999998877777777777766 679999999999998765543322 233332 345
Q ss_pred ccEEEcccCCCCCHHHHHHHHHhhCCCC
Q 014942 258 DEVIPVSAKYGHGVEDIRDWILTKLPLG 285 (415)
Q Consensus 258 ~~i~~vSA~~g~gv~eL~~~L~~~l~~~ 285 (415)
.+++++||++|.|+++|+++|.+.++..
T Consensus 185 ~~~~~~SA~~g~gv~~l~~~l~~~~~~~ 212 (223)
T 4dhe_A 185 LTVQLFSALKRTGLDDAHALIESWLRPA 212 (223)
T ss_dssp EEEEEEBTTTTBSHHHHHHHHHHHHC--
T ss_pred CeEEEeecCCCcCHHHHHHHHHHhcCcc
Confidence 6899999999999999999999998753
No 6
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.90 E-value=4.9e-24 Score=215.67 Aligned_cols=165 Identities=25% Similarity=0.313 Sum_probs=120.3
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhcc
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (415)
++|+|+|.||||||||+|+|++.+.+.+++.|++|++.....+.+.+..+.+|||||+.......+...+...+..+++.
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIRE 81 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHh
Confidence 58999999999999999999999988889999999999988888888999999999975322233445566777888999
Q ss_pred cceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHHHHHHHhhcCCCccEEEcccCCCCCHHHHH
Q 014942 196 ADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIR 275 (415)
Q Consensus 196 aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gv~eL~ 275 (415)
||++|+|+|++.+....+.++...++. .++|+++|+||+|+..... ......+.. .++.+++++||++|.|+++|+
T Consensus 82 ad~il~V~D~~~~~~~~d~~i~~~l~~--~~~p~ilv~NK~D~~~~~~-~~~~~~~~~-lg~~~~~~iSA~~g~gv~~L~ 157 (439)
T 1mky_A 82 ADLVLFVVDGKRGITKEDESLADFLRK--STVDTILVANKAENLREFE-REVKPELYS-LGFGEPIPVSAEHNINLDTML 157 (439)
T ss_dssp CSEEEEEEETTTCCCHHHHHHHHHHHH--HTCCEEEEEESCCSHHHHH-HHTHHHHGG-GSSCSCEECBTTTTBSHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHH--cCCCEEEEEeCCCCccccH-HHHHHHHHh-cCCCCEEEEeccCCCCHHHHH
Confidence 999999999998888777777777766 6799999999999853211 112022222 244478999999999999999
Q ss_pred HHHHhhCCC
Q 014942 276 DWILTKLPL 284 (415)
Q Consensus 276 ~~L~~~l~~ 284 (415)
++|.+.+++
T Consensus 158 ~~i~~~l~~ 166 (439)
T 1mky_A 158 ETIIKKLEE 166 (439)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHhccc
Confidence 999988864
No 7
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.90 E-value=1.2e-24 Score=208.59 Aligned_cols=206 Identities=18% Similarity=0.243 Sum_probs=141.2
Q ss_pred CCccEEEEEecCCCCHHHHHHHHhCCcee-----eeeCCCC----------------------ceEEeE-----------
Q 014942 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLS-----IVTNKPQ----------------------TTRHRI----------- 154 (415)
Q Consensus 113 ~~~~~V~ivG~~~vGKSSLln~l~~~~~~-----~~~~~~~----------------------tt~~~~----------- 154 (415)
...++|+|+|.+|||||||+|+|++..+. .++..|+ +|++.+
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i 103 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 103 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence 45679999999999999999999998874 3444454 222200
Q ss_pred -------------EEEEeCCCeeEEEEeCCCCchhh----hhhHhHHHHHHHHhhhcccceEE-EEecCCCCCchHHH-H
Q 014942 155 -------------LGICSGPEYQMILYDTPGIIEKK----IHMLDSMMMKNVRSAGINADCIV-VLVDACKAPERIDE-I 215 (415)
Q Consensus 155 -------------~~~~~~~~~~l~liDtpG~~~~~----~~~l~~~~~~~~~~~~~~aD~ii-~VvD~~~~~~~~~~-~ 215 (415)
..+.......+.||||||+.... ...+...+...+..++..++.++ +|+|++.+....+. .
T Consensus 104 ~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~ 183 (299)
T 2aka_B 104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 183 (299)
T ss_dssp CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHH
T ss_pred cccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHH
Confidence 00111124689999999975311 12222334455667777887666 79999877654442 3
Q ss_pred HHHHhcccCCCCCEEEEEeCCCCCChhH-HHHHHHH-Hhh-cCCCccEEEcccCCCCCHHHHHHHHHhhCCCCCCCCCCC
Q 014942 216 LEEGVGDHKDKLPILLVLNKKDLIKPGE-IAKKLEW-YEK-FTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKF 292 (415)
Q Consensus 216 l~~~l~~~~~~~piilV~NK~Dl~~~~~-~~~~~~~-~~~-~~~~~~i~~vSA~~g~gv~eL~~~L~~~l~~~~~~~~~~ 292 (415)
+...+.. .+.|+++|+||+|+..... ....... +.. ..++.+++++||++|.|+++|+++|.+ ++++.|+.
T Consensus 184 ~~~~~~~--~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~---~~~~~~~~- 257 (299)
T 2aka_B 184 IAKEVDP--QGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA---ERKFFLSH- 257 (299)
T ss_dssp HHHHHCT--TCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHH---HHHHHHHC-
T ss_pred HHHHhCC--CCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHH---HHHHHhcC-
Confidence 4555554 6789999999999976433 2222111 000 013457899999999999999999987 44566666
Q ss_pred CccccCCchh---HHHHHHHHHHHHhhcCCCCCceE
Q 014942 293 QDIVSEHPER---FFVGEIIREKIFMQYRNEVPYAC 325 (415)
Q Consensus 293 ~~~~t~~~~~---~~i~eiireki~~~~~~eipys~ 325 (415)
+..++.+.+ +.+.+++|++++.++++++||..
T Consensus 258 -~~~~~~~~r~~~~~l~~~l~~~l~~~~~~~lP~~~ 292 (299)
T 2aka_B 258 -PSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLR 292 (299)
T ss_dssp -TTTGGGGGGCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CccccchhhhCHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 667777777 88999999999999999999864
No 8
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.90 E-value=6.6e-26 Score=234.76 Aligned_cols=230 Identities=18% Similarity=0.218 Sum_probs=159.4
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCcee--eeeCCCCceEEeEEEEEeCCC-----------------------------
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLS--IVTNKPQTTRHRILGICSGPE----------------------------- 162 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~--~~~~~~~tt~~~~~~~~~~~~----------------------------- 162 (415)
..++|+|+|.+|||||||+|+|++.++. .++..++|++.... .....
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i--~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~ 141 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAV--MHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLN 141 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEE--ECCSSSEEECCC------------------CCCT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEE--EECCcccccCCceeeecCcccHHHHhhhcccccc
Confidence 4569999999999999999999999875 46777777543211 11100
Q ss_pred ------------eeEEEEeCCCCchhhhhhHhHH--HHHHHHhhhcccceEEEEecCCCC-CchHHHHHHHHhcccCCCC
Q 014942 163 ------------YQMILYDTPGIIEKKIHMLDSM--MMKNVRSAGINADCIVVLVDACKA-PERIDEILEEGVGDHKDKL 227 (415)
Q Consensus 163 ------------~~l~liDtpG~~~~~~~~l~~~--~~~~~~~~~~~aD~ii~VvD~~~~-~~~~~~~l~~~l~~~~~~~ 227 (415)
.++.||||||+.......+... +...+..++..+|++|+|+|+++. .......+...+.. .+.
T Consensus 142 ~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~--~~~ 219 (550)
T 2qpt_A 142 RFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG--HED 219 (550)
T ss_dssp TEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT--CGG
T ss_pred cceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh--cCC
Confidence 3689999999853221111111 334456668899999999999873 45555556666655 568
Q ss_pred CEEEEEeCCCCCChhHHHHHHHHHhhcCCCccEEEcccCCCCCHHHHHHHHHhhCCCCCCCCCCCCccccCCchhHHHHH
Q 014942 228 PILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKFQDIVSEHPERFFVGE 307 (415)
Q Consensus 228 piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gv~eL~~~L~~~l~~~~~~~~~~~~~~t~~~~~~~i~e 307 (415)
|+++|+||+|+....++......+.. .+..++++|.... ++.+++.++. ... +.+.+++.+|
T Consensus 220 pvilVlNK~Dl~~~~el~~~~~~l~~--s~~~i~~vs~l~~-------------~~~~~~~~~~--~~~-~~~~~~~~~E 281 (550)
T 2qpt_A 220 KIRVVLNKADMVETQQLMRVYGALMW--ALGKVVGTPEVLR-------------VYIGSFWSQP--LLV-PDNRRLFELE 281 (550)
T ss_dssp GEEEEEECGGGSCHHHHHHHHHHHHH--HHHHHHCCSSCCC-------------EEESCCSSSC--CSS-CTTHHHHHHH
T ss_pred CEEEEEECCCccCHHHHHHHHHHhhc--chhheeechHhhh-------------hccccCCCCc--ccC-CCCHHHHHHH
Confidence 99999999999987766655554431 1223445553221 1344555554 444 6889999999
Q ss_pred HHHHHHHhhcCCCCCceEEEE-EEEEEecCCCeeEEEEEEEEeeCCceeEEeecCChHHHHHH
Q 014942 308 IIREKIFMQYRNEVPYACQVN-VVSYKTRPTAKDFIQVEIVVEKNSQKIILIGKGGKALKLLA 369 (415)
Q Consensus 308 iireki~~~~~~eipys~~v~-i~~~~~~~~~~~~i~~~~~~~r~~q~~iiiG~~g~~i~~i~ 369 (415)
+ |++|..+ +++||++.++ +..+..+. +.+.|.+.|+|+|.+|+.|+||++|...+.+.
T Consensus 282 ~--e~l~~~l-~elP~~~~v~~i~~~~~~~-~~~~I~a~I~v~~~sqk~i~iGk~g~~~~li~ 340 (550)
T 2qpt_A 282 E--QDLFRDI-QGLPRHAALRKLNDLVKRA-RLVRVHAYIISYLKKEMPTVFGKENKKKQLIL 340 (550)
T ss_dssp H--HHHHHHH-HTTGGGHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHH
T ss_pred H--HHHHHHh-hhccHHHHHHHHHHHhccC-CeEEEEEEEEEeecccceeEECCchHHHHHHH
Confidence 8 8999886 9999999988 44554432 45678889999999999999999998876554
No 9
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.89 E-value=1.4e-22 Score=180.66 Aligned_cols=167 Identities=29% Similarity=0.372 Sum_probs=118.6
Q ss_pred CCccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhh----hhHhHHHHHH
Q 014942 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI----HMLDSMMMKN 188 (415)
Q Consensus 113 ~~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~----~~l~~~~~~~ 188 (415)
...++|+++|.+|||||||+|+|++.....+...+++|........ +.++.+|||||+..... ......+...
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~---~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~ 97 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLV---NSKYYFVDLPGYGYAKVSKKERMLWKRLVED 97 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEE---TTTEEEEECCCBSSSCCCHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEE---CCcEEEEECCCCccccCChhhHHHHHHHHHH
Confidence 3556999999999999999999999987767778887776544333 34789999999632110 1111112222
Q ss_pred HHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHHHHHH---HhhcCCCccEEEccc
Q 014942 189 VRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEW---YEKFTDVDEVIPVSA 265 (415)
Q Consensus 189 ~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~~~~~---~~~~~~~~~i~~vSA 265 (415)
.......+|++++|+|++.+.......+...+.. .+.|+++|+||+|+..........+. .....+..+++++||
T Consensus 98 ~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~--~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 175 (195)
T 3pqc_A 98 YFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKS--LNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIPTSS 175 (195)
T ss_dssp HHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH--TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEEECCT
T ss_pred HHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHH--cCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceEEEec
Confidence 2233356699999999988776666666666665 57999999999999865544333222 222334458999999
Q ss_pred CCCCCHHHHHHHHHhhCCC
Q 014942 266 KYGHGVEDIRDWILTKLPL 284 (415)
Q Consensus 266 ~~g~gv~eL~~~L~~~l~~ 284 (415)
++|.|+++++++|.+.+++
T Consensus 176 ~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 176 VTGEGISELLDLISTLLKE 194 (195)
T ss_dssp TTCTTHHHHHHHHHHHHC-
T ss_pred CCCCCHHHHHHHHHHHhhc
Confidence 9999999999999988754
No 10
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.89 E-value=1.9e-22 Score=185.83 Aligned_cols=175 Identities=18% Similarity=0.189 Sum_probs=114.8
Q ss_pred CCCCCCccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHH
Q 014942 109 SHPNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKN 188 (415)
Q Consensus 109 ~~~~~~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~ 188 (415)
|..+.+.++|+|+|.+|||||||+|+|++..+. +...+++|+..........+..+.+|||||+...............
T Consensus 23 P~~~~~~~kI~vvG~~~vGKSsLin~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~ 101 (228)
T 2qu8_A 23 PSINPHKKTIILSGAPNVGKSSFMNIVSRANVD-VQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTT 101 (228)
T ss_dssp CSCCTTSEEEEEECSTTSSHHHHHHHHTTTCEE-EECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHH
T ss_pred CCCCCCCCEEEEECCCCCCHHHHHHHHhCCCCc-cCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHH
Confidence 333456789999999999999999999999876 5677888887777666767789999999997431111111111122
Q ss_pred HHhhhcccceEEEEecCCCCCc---hHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHH----HHHHHHhhcC-CCccE
Q 014942 189 VRSAGINADCIVVLVDACKAPE---RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA----KKLEWYEKFT-DVDEV 260 (415)
Q Consensus 189 ~~~~~~~aD~ii~VvD~~~~~~---~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~----~~~~~~~~~~-~~~~i 260 (415)
+..++..+|++|+|+|++++.. .....+...+.....+.|+++|+||+|+.....+. .....+.... ...++
T Consensus 102 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (228)
T 2qu8_A 102 ITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKF 181 (228)
T ss_dssp HHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEE
T ss_pred HHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceE
Confidence 2334678899999999987642 11222333333322479999999999997643321 1222232222 23589
Q ss_pred EEcccCCCCCHHHHHHHHHhhCCC
Q 014942 261 IPVSAKYGHGVEDIRDWILTKLPL 284 (415)
Q Consensus 261 ~~vSA~~g~gv~eL~~~L~~~l~~ 284 (415)
++|||++|.|+++++++|.+.+..
T Consensus 182 ~~~SA~~g~gi~~l~~~l~~~i~~ 205 (228)
T 2qu8_A 182 SSFSTLTGVGVEQAKITACELLKN 205 (228)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHH
T ss_pred EEEecccCCCHHHHHHHHHHHHHH
Confidence 999999999999999999987753
No 11
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.89 E-value=1.7e-22 Score=180.73 Aligned_cols=166 Identities=23% Similarity=0.272 Sum_probs=108.9
Q ss_pred CCccEEEEEecCCCCHHHHHHHHhCCc-eeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhh-hHhHHHHHHHH
Q 014942 113 HKSGYVAVLGKPNVGKSTLANQMIGQK-LSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIH-MLDSMMMKNVR 190 (415)
Q Consensus 113 ~~~~~V~ivG~~~vGKSSLln~l~~~~-~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~-~l~~~~~~~~~ 190 (415)
.+.++|+++|.+|||||||+|+|++.. ...+...+++|........ +..+.+|||||+...... .....+...+.
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 97 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYII---NDELHFVDVPGYGFAKVSKSEREAWGRMIE 97 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEE---TTTEEEEECCCBCCCSSCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEE---CCcEEEEECCCCCccccCHHHHHHHHHHHH
Confidence 356799999999999999999999987 4445667777765544333 237999999996421100 00111222233
Q ss_pred hhhc---ccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHHHHHHHhh---cCCCccEEEcc
Q 014942 191 SAGI---NADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVS 264 (415)
Q Consensus 191 ~~~~---~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~---~~~~~~i~~vS 264 (415)
.++. .+|++++|+|++++.......+...+.. .+.|+++|+||+|+.....+....+.+.. .....+++++|
T Consensus 98 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~--~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 175 (195)
T 1svi_A 98 TYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKY--YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFS 175 (195)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH--TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEECC
T ss_pred HHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHH--cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceEEEE
Confidence 3344 4499999999998776666656666655 68999999999999876655433333322 12345899999
Q ss_pred cCCCCCHHHHHHHHHhhCC
Q 014942 265 AKYGHGVEDIRDWILTKLP 283 (415)
Q Consensus 265 A~~g~gv~eL~~~L~~~l~ 283 (415)
|++|.|+++++++|.+.++
T Consensus 176 a~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 176 SETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp TTTCTTHHHHHHHHHHHHT
T ss_pred ccCCCCHHHHHHHHHHHhc
Confidence 9999999999999988764
No 12
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.89 E-value=3.5e-23 Score=182.47 Aligned_cols=162 Identities=26% Similarity=0.342 Sum_probs=115.8
Q ss_pred ccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhc
Q 014942 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (415)
..+|+++|.+|||||||+|+|.+.....++..+++|++.....+..++..+.+|||||+.. ....+..........+++
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~~~~~~~~ 82 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRE-ASDEVERIGIERAWQEIE 82 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSC-CSSHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCccc-chhHHHHHHHHHHHHHHH
Confidence 3589999999999999999999988766778889998877777777778899999999742 112222222333445678
Q ss_pred ccceEEEEecCCCCCchHH-HHHHHHhcccCCCCCEEEEEeCCCCCChhHHHHHHHHHhhcCCCccEEEcccCCCCCHHH
Q 014942 195 NADCIVVLVDACKAPERID-EILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVED 273 (415)
Q Consensus 195 ~aD~ii~VvD~~~~~~~~~-~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gv~e 273 (415)
.+|++++|+|++++..... .++..+......+.|+++|+||+|+..... . +... ...+++++||++|.|+++
T Consensus 83 ~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~-----~-~~~~-~~~~~~~~SA~~g~gv~~ 155 (172)
T 2gj8_A 83 QADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETL-----G-MSEV-NGHALIRLSARTGEGVDV 155 (172)
T ss_dssp TCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCC-----E-EEEE-TTEEEEECCTTTCTTHHH
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCCcchh-----h-hhhc-cCCceEEEeCCCCCCHHH
Confidence 9999999999987653222 333222222224799999999999853210 0 0111 235799999999999999
Q ss_pred HHHHHHhhCCC
Q 014942 274 IRDWILTKLPL 284 (415)
Q Consensus 274 L~~~L~~~l~~ 284 (415)
++++|.+.+..
T Consensus 156 l~~~l~~~~~~ 166 (172)
T 2gj8_A 156 LRNHLKQSMGF 166 (172)
T ss_dssp HHHHHHHHC--
T ss_pred HHHHHHHHhhh
Confidence 99999998764
No 13
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.89 E-value=2.3e-23 Score=210.64 Aligned_cols=223 Identities=26% Similarity=0.342 Sum_probs=140.5
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhcc
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (415)
++|+++|+||||||||+|+|++...+.+.+.+++|++.......+.+..+.+|||||+.... ..+...+...+..++..
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~-~~~~~~~~~~~~~~~~~ 82 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGD-EPFLAQIRQQAEIAMDE 82 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC----------CHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcc-hhHHHHHHHHHHHHHHh
Confidence 58999999999999999999999888889999999999988888888999999999974222 22455566777888999
Q ss_pred cceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHHHHHHHhhcCCCccEEEcccCCCCCHHHHH
Q 014942 196 ADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIR 275 (415)
Q Consensus 196 aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gv~eL~ 275 (415)
||++|+|+|++++....+.++...++. .++|+++|+||+|+..... ...+.+ . .++.+++++||++|.|+++|+
T Consensus 83 ad~il~vvD~~~~~~~~d~~~~~~l~~--~~~pvilv~NK~D~~~~~~--~~~~~~-~-lg~~~~~~iSA~~g~gv~~L~ 156 (436)
T 2hjg_A 83 ADVIIFMVNGREGVTAADEEVAKILYR--TKKPVVLAVNKLDNTEMRA--NIYDFY-S-LGFGEPYPISGTHGLGLGDLL 156 (436)
T ss_dssp CSEEEEEEETTTCSCHHHHHHHHHHTT--CCSCEEEEEECCCC-------CCCSSG-G-GSSCCCEECBTTTTBTHHHHH
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHH--cCCCEEEEEECccCccchh--hHHHHH-H-cCCCCeEEEeCcCCCChHHHH
Confidence 999999999999888888888887776 7899999999999875321 011111 1 234478999999999999999
Q ss_pred HHHHhhCCCCCCCCCCCCccccCCchhHHHHHHHHHHHHhhcCCCCCceEEEEEEEEEe------cCC-CeeEEEEEEEE
Q 014942 276 DWILTKLPLGPAYYPKFQDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKT------RPT-AKDFIQVEIVV 348 (415)
Q Consensus 276 ~~L~~~l~~~~~~~~~~~~~~t~~~~~~~i~eiireki~~~~~~eipys~~v~i~~~~~------~~~-~~~~i~~~~~~ 348 (415)
++|.+.+++.+.... .+.+. ++....++++|+|+.++.+.+.. .++ +...+. ..+
T Consensus 157 ~~i~~~l~~~~~~~~------~~~~~----------ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~--~~~ 218 (436)
T 2hjg_A 157 DAVAEHFKNIPETKY------NEEVI----------QFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVD--TSF 218 (436)
T ss_dssp HHHHHTGGGCCSSCC------CTTCE----------EEEEECSTTSSHHHHHHHHHTSTTEEEC---------CC--EEE
T ss_pred HHHHHhcCccccccc------cccCc----------EEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeE--EEE
Confidence 999998875321100 01111 11223355555555544332211 112 222222 234
Q ss_pred eeCCceeEEeecCCh
Q 014942 349 EKNSQKIILIGKGGK 363 (415)
Q Consensus 349 ~r~~q~~iiiG~~g~ 363 (415)
+..++...++++.|.
T Consensus 219 ~~~~~~~~l~DT~G~ 233 (436)
T 2hjg_A 219 TYNQQEFVIVDTAGM 233 (436)
T ss_dssp EETTEEEEETTHHHH
T ss_pred EECCeEEEEEECCCc
Confidence 567788899999884
No 14
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.89 E-value=3.3e-23 Score=189.84 Aligned_cols=162 Identities=20% Similarity=0.225 Sum_probs=109.1
Q ss_pred CCCccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeE--EEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHH
Q 014942 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRI--LGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNV 189 (415)
Q Consensus 112 ~~~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~--~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~ 189 (415)
+.+..+|+|+|.+|||||||+++|+...+.. ...|....+.. ........+.+.||||+| ++.+..+..
T Consensus 10 P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~-~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaG--qe~~~~l~~------ 80 (216)
T 4dkx_A 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDN-TYQATIGIDFLSKTMYLEDRTIRLQLWDTAG--LERFRSLIP------ 80 (216)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCCC-----------CEEEEEECSSCEEEEEEECCSC--TTTCGGGHH------
T ss_pred CCCcEEEEEECcCCcCHHHHHHHHHhCCCCC-CcCCccceEEEEEEEEecceEEEEEEEECCC--chhhhhHHH------
Confidence 3467799999999999999999999877642 11121112222 223344556889999999 566666543
Q ss_pred HhhhcccceEEEEecCCCCC--chHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHH-HHHHHHhhcCCCccEEEcccC
Q 014942 190 RSAGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAK 266 (415)
Q Consensus 190 ~~~~~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~i~~vSA~ 266 (415)
.+++.++++++|+|.++.. .....|+..+......+.|++||+||+|+...+.+. +....+....+ .++++|||+
T Consensus 81 -~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~-~~~~e~SAk 158 (216)
T 4dkx_A 81 -SYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELN-VMFIETSAK 158 (216)
T ss_dssp -HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHT-CEEEEEBTT
T ss_pred -HHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhC-CeeEEEeCC
Confidence 3488999999999998643 455566665544444689999999999997543321 11222222223 479999999
Q ss_pred CCCCHHHHHHHHHhhCCC
Q 014942 267 YGHGVEDIRDWILTKLPL 284 (415)
Q Consensus 267 ~g~gv~eL~~~L~~~l~~ 284 (415)
+|.||+++|+.|++.++.
T Consensus 159 tg~nV~e~F~~i~~~i~~ 176 (216)
T 4dkx_A 159 AGYNVKQLFRRVAAALPG 176 (216)
T ss_dssp TTBSHHHHHHHHHHHC--
T ss_pred CCcCHHHHHHHHHHHHHh
Confidence 999999999999998864
No 15
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.89 E-value=4e-22 Score=177.49 Aligned_cols=164 Identities=16% Similarity=0.192 Sum_probs=112.0
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~ 193 (415)
+..+|+++|.+|||||||+|+|++..+....+..+.+. ..+..++..+.+|||||. ..+..+ +..++
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~----~~~~~~~~~~~i~Dt~G~--~~~~~~-------~~~~~ 81 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNV----EEIVINNTRFLMWDIGGQ--ESLRSS-------WNTYY 81 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSC----EEEEETTEEEEEEECCC------CGG-------GHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCccce----EEEEECCEEEEEEECCCC--HhHHHH-------HHHHh
Confidence 56799999999999999999999877654444433332 223346789999999995 333333 23447
Q ss_pred cccceEEEEecCCCCC--chHHHHHHHHhccc-CCCCCEEEEEeCCCCCChhHHHHHHHHHhh---cCCCccEEEcccCC
Q 014942 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVSAKY 267 (415)
Q Consensus 194 ~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~-~~~~piilV~NK~Dl~~~~~~~~~~~~~~~---~~~~~~i~~vSA~~ 267 (415)
..+|++|+|+|++++. .....++...+... ..+.|+++|+||+|+.......+..+.+.. .....+++++||++
T Consensus 82 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~ 161 (187)
T 1zj6_A 82 TNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALT 161 (187)
T ss_dssp TTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTT
T ss_pred cCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCcEEEEccCCC
Confidence 8999999999998763 44555666555431 257999999999999764333333333322 11234899999999
Q ss_pred CCCHHHHHHHHHhhCCCCCCCCC
Q 014942 268 GHGVEDIRDWILTKLPLGPAYYP 290 (415)
Q Consensus 268 g~gv~eL~~~L~~~l~~~~~~~~ 290 (415)
|.|+++++++|.+.+...++..|
T Consensus 162 g~gi~~l~~~l~~~~~~~~~~~~ 184 (187)
T 1zj6_A 162 GEGLCQGLEWMMSRLKIRLEHHH 184 (187)
T ss_dssp TBTHHHHHHHHHHHHCC------
T ss_pred CcCHHHHHHHHHHHHHHHhhhhc
Confidence 99999999999999887665544
No 16
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.89 E-value=2.6e-22 Score=180.95 Aligned_cols=157 Identities=21% Similarity=0.212 Sum_probs=106.9
Q ss_pred CCccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhh
Q 014942 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (415)
Q Consensus 113 ~~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~ 192 (415)
.+..+|+++|++|||||||+++|.+..+....+..+.+ ...+..++..+.+|||||. ..+..+ +..+
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~----~~~~~~~~~~l~i~Dt~G~--~~~~~~-------~~~~ 89 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT----SEELTIAGMTFTTFDLGGH--IQARRV-------WKNY 89 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC------CCCCCS----CEEEEETTEEEEEEEECC------CCG-------GGGG
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCce----eEEEEECCEEEEEEECCCc--HhhHHH-------HHHH
Confidence 35679999999999999999999988765444333333 2334456689999999994 333322 3456
Q ss_pred hcccceEEEEecCCCCC--chHHHHHHHHhccc-CCCCCEEEEEeCCCCCChhHHHHHHHHHhhc---------------
Q 014942 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEKF--------------- 254 (415)
Q Consensus 193 ~~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~-~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~--------------- 254 (415)
++.+|++++|+|++++. .....++...+... ..+.|+++|+||+|+.......+..+.+...
T Consensus 90 ~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (198)
T 1f6b_A 90 LPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELN 169 (198)
T ss_dssp GGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCC
T ss_pred HhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCccccccccccccccccc
Confidence 78999999999998753 34455555554431 2579999999999997532233333333321
Q ss_pred CCCccEEEcccCCCCCHHHHHHHHHhhC
Q 014942 255 TDVDEVIPVSAKYGHGVEDIRDWILTKL 282 (415)
Q Consensus 255 ~~~~~i~~vSA~~g~gv~eL~~~L~~~l 282 (415)
....++++|||++|.|+++++++|.+.+
T Consensus 170 ~~~~~~~~~SA~~g~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 170 ARPLEVFMCSVLKRQGYGEGFRWMAQYI 197 (198)
T ss_dssp SCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred CceEEEEEEECCCCCCHHHHHHHHHHhc
Confidence 1335799999999999999999998765
No 17
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.88 E-value=1.7e-22 Score=180.90 Aligned_cols=163 Identities=18% Similarity=0.232 Sum_probs=113.2
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCcee-eeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLS-IVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~-~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~ 192 (415)
+..+|+|+|.+|||||||+|+|++..+. ......+++.......+......+.+|||||. ..+..+ +..+
T Consensus 22 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~-------~~~~ 92 (192)
T 2fg5_A 22 RELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQ--ERFHSL-------APMY 92 (192)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCS--GGGGGG-------THHH
T ss_pred CceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCc--hhhHhh-------hHHh
Confidence 4569999999999999999999987753 34455566655544445556778999999994 344433 2344
Q ss_pred hcccceEEEEecCCCCC--chHHHHHHHHhcccCCCCCEEEEEeCCCCCChhH--HHHHHHHHhhcCCCccEEEcccCCC
Q 014942 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE--IAKKLEWYEKFTDVDEVIPVSAKYG 268 (415)
Q Consensus 193 ~~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~--~~~~~~~~~~~~~~~~i~~vSA~~g 268 (415)
+..+|++|+|+|++++. .....++..+......+.|+++|+||+|+..... ........ ...+ .+++++||++|
T Consensus 93 ~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~-~~~~-~~~~~~Sa~~~ 170 (192)
T 2fg5_A 93 YRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYA-ESIG-AIVVETSAKNA 170 (192)
T ss_dssp HTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHH-HTTT-CEEEECBTTTT
T ss_pred hccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHH-HHcC-CEEEEEeCCCC
Confidence 78999999999998754 2333344333332225789999999999964322 22223333 3233 58999999999
Q ss_pred CCHHHHHHHHHhhCCCCCC
Q 014942 269 HGVEDIRDWILTKLPLGPA 287 (415)
Q Consensus 269 ~gv~eL~~~L~~~l~~~~~ 287 (415)
.|+++++++|.+.++..++
T Consensus 171 ~gi~~l~~~l~~~i~~~~~ 189 (192)
T 2fg5_A 171 INIEELFQGISRQIPPLDP 189 (192)
T ss_dssp BSHHHHHHHHHHTCC----
T ss_pred cCHHHHHHHHHHHHHhhCC
Confidence 9999999999999976543
No 18
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.88 E-value=1.3e-22 Score=176.40 Aligned_cols=157 Identities=24% Similarity=0.272 Sum_probs=96.4
Q ss_pred ccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhc
Q 014942 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (415)
..+|+++|.+|||||||+|+|.+.........++++.... ..+......+.+|||||. ..+..+ ...++.
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~D~~g~--~~~~~~-------~~~~~~ 71 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRS-IVVDGEEASLMVYDIWEQ--DGGRWL-------PGHCMA 71 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEEEEE-EEETTEEEEEEEEECC-----------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEEE-EEECCEEEEEEEEECCCC--ccchhh-------hhhhhh
Confidence 3589999999999999999999988776677777776432 234555678999999994 333322 334578
Q ss_pred ccceEEEEecCCCCC--chHHHHHHHHhccc-CCCCCEEEEEeCCCCCChhHHH-HHHHHHhhcCCCccEEEcccCCCCC
Q 014942 195 NADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYGHG 270 (415)
Q Consensus 195 ~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~-~~~~piilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~i~~vSA~~g~g 270 (415)
.+|++++|+|++++. .....++..+.... ..+.|+++|+||+|+.....+. .....+....+ .+++++||++|.|
T Consensus 72 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~g 150 (166)
T 3q72_A 72 MGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFD-CKFIETSAALHHN 150 (166)
T ss_dssp -CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTT-CEEEECBGGGTBS
T ss_pred hCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhC-CcEEEeccCCCCC
Confidence 999999999998653 33344444443321 2579999999999997543221 12222333233 4899999999999
Q ss_pred HHHHHHHHHhhC
Q 014942 271 VEDIRDWILTKL 282 (415)
Q Consensus 271 v~eL~~~L~~~l 282 (415)
+++++++|.+.+
T Consensus 151 i~~l~~~l~~~~ 162 (166)
T 3q72_A 151 VQALFEGVVRQI 162 (166)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998765
No 19
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.88 E-value=3.8e-23 Score=199.74 Aligned_cols=206 Identities=19% Similarity=0.232 Sum_probs=136.8
Q ss_pred CCccEEEEEecCCCCHHHHHHHHhCCce-----eeeeCCC---CceEEe-------------------------------
Q 014942 113 HKSGYVAVLGKPNVGKSTLANQMIGQKL-----SIVTNKP---QTTRHR------------------------------- 153 (415)
Q Consensus 113 ~~~~~V~ivG~~~vGKSSLln~l~~~~~-----~~~~~~~---~tt~~~------------------------------- 153 (415)
...++|+|+|.+|||||||+|+|+|..+ ..++..| .+++..
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREE 101 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHH
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHH
Confidence 3557999999999999999999999887 4444555 233320
Q ss_pred -------EE-------------EEEeCCCeeEEEEeCCCCchhh----hhhHhHHHHHHHHhhhcccceEEEEecC-CCC
Q 014942 154 -------IL-------------GICSGPEYQMILYDTPGIIEKK----IHMLDSMMMKNVRSAGINADCIVVLVDA-CKA 208 (415)
Q Consensus 154 -------~~-------------~~~~~~~~~l~liDtpG~~~~~----~~~l~~~~~~~~~~~~~~aD~ii~VvD~-~~~ 208 (415)
+. .+....+.++.||||||+.... ...+...+...+..++..+|++++|+|+ +.+
T Consensus 102 i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~ 181 (315)
T 1jwy_B 102 IIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTD 181 (315)
T ss_dssp HHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSC
T ss_pred HHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcc
Confidence 00 0123345689999999985311 1234455667788889999999999997 444
Q ss_pred Cc-hHHHHHHHHhcccCCCCCEEEEEeCCCCCChhH-HHHHHHH-Hhhc-CCCccEEEcccCC---CCCHHHHHHHHHhh
Q 014942 209 PE-RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE-IAKKLEW-YEKF-TDVDEVIPVSAKY---GHGVEDIRDWILTK 281 (415)
Q Consensus 209 ~~-~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~-~~~~~~~-~~~~-~~~~~i~~vSA~~---g~gv~eL~~~L~~~ 281 (415)
.. .....+...+.. .+.|+++|+||+|+..... ....... +... .++.+++++||.+ +.|+.++++.+.+.
T Consensus 182 ~~~~~~~~i~~~~~~--~~~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~ 259 (315)
T 1jwy_B 182 LANSDALQLAKEVDP--EGKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILY 259 (315)
T ss_dssp STTCSHHHHHHHHCS--SCSSEEEEEECTTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHhCC--CCCcEEEEEcCcccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHH
Confidence 33 222345555555 6789999999999986443 2222211 0000 2233445556666 89999999999999
Q ss_pred CCCCCCCCCCCCccccCCchhHHHHHHHHHHHHhhcCCCCCceE
Q 014942 282 LPLGPAYYPKFQDIVSEHPERFFVGEIIREKIFMQYRNEVPYAC 325 (415)
Q Consensus 282 l~~~~~~~~~~~~~~t~~~~~~~i~eiireki~~~~~~eipys~ 325 (415)
++.+++ |+ +..++.+.+++..+ +|++++.++++++||..
T Consensus 260 ~~~~~~-~~---~~~~~~~~~~l~~~-lre~l~~~~~~elP~~~ 298 (315)
T 1jwy_B 260 FKNHPI-YK---SIANRSGTAYLSKT-LNKLLMFHIRDTLPDLK 298 (315)
T ss_dssp HHTCTT-GG---GSGGGCSHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred HhCCCc-cc---cchhccCHHHHHHH-HHHHHHHHHHHHhHHHH
Confidence 998877 44 34566778777775 99999999999999864
No 20
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.88 E-value=1.3e-22 Score=177.80 Aligned_cols=161 Identities=22% Similarity=0.221 Sum_probs=103.0
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~ 193 (415)
+..+|+++|++|||||||+|+|++..+......++++.......+......+.+|||||.....+..+ ...++
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~-------~~~~~ 75 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWS-------QESCL 75 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHH-------HHHTT
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhh-------HHhhc
Confidence 34689999999999999999999998776666666665444334444456889999999532112211 23457
Q ss_pred cccceEEEEecCCCCC--chHHHHHHHHhccc-CCCCCEEEEEeCCCCCChhHH--HHHHHHHhhcCCCccEEEcccCCC
Q 014942 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEI--AKKLEWYEKFTDVDEVIPVSAKYG 268 (415)
Q Consensus 194 ~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~-~~~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~i~~vSA~~g 268 (415)
..+|++++|+|++++. .....++..+.... ..+.|+++|+||+|+.....+ ......... .+ .+++++||++|
T Consensus 76 ~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~-~~-~~~~~~Sa~~g 153 (175)
T 2nzj_A 76 QGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVV-FD-CKFIETSATLQ 153 (175)
T ss_dssp TSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHH-HT-SEEEECBTTTT
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHH-cC-CeEEEEecCCC
Confidence 8899999999998643 23333443333221 247999999999999754322 121222222 22 47999999999
Q ss_pred CCHHHHHHHHHhhCC
Q 014942 269 HGVEDIRDWILTKLP 283 (415)
Q Consensus 269 ~gv~eL~~~L~~~l~ 283 (415)
.|+++++++|.+.+.
T Consensus 154 ~gi~~l~~~l~~~~~ 168 (175)
T 2nzj_A 154 HNVAELFEGVVRQLR 168 (175)
T ss_dssp BSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999988663
No 21
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.88 E-value=8.6e-23 Score=191.88 Aligned_cols=166 Identities=23% Similarity=0.296 Sum_probs=119.1
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhh----hHhHHHHHHHHh
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIH----MLDSMMMKNVRS 191 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~----~l~~~~~~~~~~ 191 (415)
++|+++|.+|||||||+|+|+|.... ++..|++|.+.....+...+..+.+|||||+...... .....+ +..
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~-v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i---~~~ 77 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQR-VGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQI---AAQ 77 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEE-EEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHH---HHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC-ccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHH---HHH
Confidence 48999999999999999999998754 7888999998888888888889999999997432211 233323 223
Q ss_pred hh--cccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHHHHHHHhhcCCCccEEEcccCCCC
Q 014942 192 AG--INADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGH 269 (415)
Q Consensus 192 ~~--~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~ 269 (415)
++ ..+|++|+|+|+++. .....+...+.. .+.|+++|+||+|+.....+......+....+ .+++++||++|.
T Consensus 78 ~~~~~~~d~vi~VvDas~~--~~~~~l~~~l~~--~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg-~~vi~~SA~~g~ 152 (256)
T 3iby_A 78 SVIDLEYDCIINVIDACHL--ERHLYLTSQLFE--LGKPVVVALNMMDIAEHRGISIDTEKLESLLG-CSVIPIQAHKNI 152 (256)
T ss_dssp HHHHSCCSEEEEEEEGGGH--HHHHHHHHHHTT--SCSCEEEEEECHHHHHHTTCEECHHHHHHHHC-SCEEECBGGGTB
T ss_pred HHhhCCCCEEEEEeeCCCc--hhHHHHHHHHHH--cCCCEEEEEEChhcCCcCCcHHHHHHHHHHcC-CCEEEEECCCCC
Confidence 34 789999999999873 222233444444 58999999999998644322111222222223 489999999999
Q ss_pred CHHHHHHHHHhhCCCCCCCCCC
Q 014942 270 GVEDIRDWILTKLPLGPAYYPK 291 (415)
Q Consensus 270 gv~eL~~~L~~~l~~~~~~~~~ 291 (415)
|+++|+++|.+. ......|+.
T Consensus 153 gi~el~~~i~~~-~~~~~~y~~ 173 (256)
T 3iby_A 153 GIPALQQSLLHC-SQKIKPLKL 173 (256)
T ss_dssp SHHHHHHHHHTC-CSCCCCCCC
T ss_pred CHHHHHHHHHhh-hcCcccCCH
Confidence 999999999998 433324443
No 22
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.88 E-value=1.8e-22 Score=175.67 Aligned_cols=160 Identities=20% Similarity=0.194 Sum_probs=110.4
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeee-eCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIV-TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~-~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~ 192 (415)
+..+|+++|.+|||||||+|+|++..+... ....+.+.......+...+..+.+|||||. ..+..+ +..+
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~--~~~~~~-------~~~~ 75 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ--ERYHSL-------APMY 75 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCS--GGGGGG-------HHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCc--HHhhhh-------hHHh
Confidence 456899999999999999999998765432 223333333333334444678999999995 343333 3445
Q ss_pred hcccceEEEEecCCCCC--chHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHH--HHHHHHHhhcCCCccEEEcccCCC
Q 014942 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI--AKKLEWYEKFTDVDEVIPVSAKYG 268 (415)
Q Consensus 193 ~~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~i~~vSA~~g 268 (415)
+..+|++++|+|++++. .....++..+......+.|+++|+||+|+.....+ ......... .+ .+++++||++|
T Consensus 76 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~-~~-~~~~~~Sa~~g 153 (170)
T 1r2q_A 76 YRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADD-NS-LLFMETSAKTS 153 (170)
T ss_dssp HTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHH-TT-CEEEECCTTTC
T ss_pred ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHH-cC-CeEEEEeCCCC
Confidence 78999999999998753 33444554444433367899999999998643221 222222222 22 47999999999
Q ss_pred CCHHHHHHHHHhhCCC
Q 014942 269 HGVEDIRDWILTKLPL 284 (415)
Q Consensus 269 ~gv~eL~~~L~~~l~~ 284 (415)
.|+++++++|.+.+++
T Consensus 154 ~gi~~l~~~i~~~~~~ 169 (170)
T 1r2q_A 154 MNVNEIFMAIAKKLPK 169 (170)
T ss_dssp TTHHHHHHHHHHTSCC
T ss_pred CCHHHHHHHHHHHHhh
Confidence 9999999999998864
No 23
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.88 E-value=2.7e-22 Score=204.04 Aligned_cols=161 Identities=27% Similarity=0.266 Sum_probs=98.7
Q ss_pred ccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhc
Q 014942 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (415)
..+|+|+|.||||||||+|+|++.+...++..++||++.....+...+..+.+|||||+.. ....+...+...+..++.
T Consensus 233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~-~~~~ve~~gi~~~~~~~~ 311 (476)
T 3gee_A 233 GVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLRE-AGEEIEHEGIRRSRMKMA 311 (476)
T ss_dssp CEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC---------------------CCCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCc-chhHHHHHHHHHHHhhcc
Confidence 3479999999999999999999998878899999999998888888899999999999743 223334444556677889
Q ss_pred ccceEEEEecCCCCCch----HHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHHHHHHHhhcCCCccEEEcccCCCCC
Q 014942 195 NADCIVVLVDACKAPER----IDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHG 270 (415)
Q Consensus 195 ~aD~ii~VvD~~~~~~~----~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~g 270 (415)
.+|++|+|+|++++... ....+...+ .+.|+++|+||+|+........ +.+... ++.+++++||++|.|
T Consensus 312 ~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l----~~~piIvV~NK~Dl~~~~~~~~--~~l~~~-~~~~~i~vSAktg~G 384 (476)
T 3gee_A 312 EADLILYLLDLGTERLDDELTEIRELKAAH----PAAKFLTVANKLDRAANADALI--RAIADG-TGTEVIGISALNGDG 384 (476)
T ss_dssp SCSEEEEEEETTTCSSGGGHHHHHHHHHHC----TTSEEEEEEECTTSCTTTHHHH--HHHHHH-HTSCEEECBTTTTBS
T ss_pred cCCEEEEEEECCCCcchhhhHHHHHHHHhc----CCCCEEEEEECcCCCCccchhH--HHHHhc-CCCceEEEEECCCCC
Confidence 99999999999987643 222333322 3689999999999987654432 222222 225799999999999
Q ss_pred HHHHHHHHHhhCC
Q 014942 271 VEDIRDWILTKLP 283 (415)
Q Consensus 271 v~eL~~~L~~~l~ 283 (415)
+++|+++|.+.+.
T Consensus 385 I~eL~~~i~~~~~ 397 (476)
T 3gee_A 385 IDTLKQHMGDLVK 397 (476)
T ss_dssp HHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999886
No 24
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.88 E-value=1.5e-21 Score=173.27 Aligned_cols=159 Identities=23% Similarity=0.330 Sum_probs=113.2
Q ss_pred CCccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhh
Q 014942 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (415)
Q Consensus 113 ~~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~ 192 (415)
.+..+|+++|++|||||||+++|.+..+..+.+..+.+.. .+...+..+.+|||||. ..+.. .+..+
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~~----~~~~~~~~l~i~Dt~G~--~~~~~-------~~~~~ 80 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIK----SVQSQGFKLNVWDIGGQ--RKIRP-------YWRSY 80 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEE----EEEETTEEEEEEECSSC--GGGHH-------HHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeEEE----EEEECCEEEEEEECCCC--HHHHH-------HHHHH
Confidence 3567999999999999999999999877655555554322 23345789999999995 33322 24456
Q ss_pred hcccceEEEEecCCCCC--chHHHHHHHHhccc-CCCCCEEEEEeCCCCCChhHHHHHHHHHhh---cCCCccEEEcccC
Q 014942 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVSAK 266 (415)
Q Consensus 193 ~~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~-~~~~piilV~NK~Dl~~~~~~~~~~~~~~~---~~~~~~i~~vSA~ 266 (415)
+..+|++++|+|++++. .....++...+... ..+.|+++|+||+|+.......+..+.+.. .....++++|||+
T Consensus 81 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 160 (181)
T 1fzq_A 81 FENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSAL 160 (181)
T ss_dssp HTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTT
T ss_pred hCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhCchhccCCceEEEEccCC
Confidence 78999999999998753 33445555554432 257899999999999765433333333221 1123478999999
Q ss_pred CCCCHHHHHHHHHhhCCC
Q 014942 267 YGHGVEDIRDWILTKLPL 284 (415)
Q Consensus 267 ~g~gv~eL~~~L~~~l~~ 284 (415)
+|.|+++++++|.+.+..
T Consensus 161 ~g~gi~~l~~~l~~~~~~ 178 (181)
T 1fzq_A 161 TGEGVQDGMNWVCKNVNA 178 (181)
T ss_dssp TCTTHHHHHHHHHHTC--
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 999999999999988754
No 25
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.88 E-value=1.2e-23 Score=197.85 Aligned_cols=185 Identities=14% Similarity=0.109 Sum_probs=125.7
Q ss_pred CCCccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCC-ceEEeEEEEEeCCCeeEEEEeCCCCchhhh--hhHhHHHHHH
Q 014942 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQ-TTRHRILGICSGPEYQMILYDTPGIIEKKI--HMLDSMMMKN 188 (415)
Q Consensus 112 ~~~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~-tt~~~~~~~~~~~~~~l~liDtpG~~~~~~--~~l~~~~~~~ 188 (415)
..+..+|+|+|++|||||||+|+|++......+..+. +|+......+...+.++.||||||+.+... ......+.+.
T Consensus 19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~ 98 (260)
T 2xtp_A 19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRC 98 (260)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHH
Confidence 3456799999999999999999999988655555555 777777777778889999999999753211 1111223445
Q ss_pred HHhhhcccceEEEEecCCCCCchHHHHHHHHhcccC---CCCCEEEEEe-CCCCCChhHHHH---------HHHHHhhcC
Q 014942 189 VRSAGINADCIVVLVDACKAPERIDEILEEGVGDHK---DKLPILLVLN-KKDLIKPGEIAK---------KLEWYEKFT 255 (415)
Q Consensus 189 ~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~---~~~piilV~N-K~Dl~~~~~~~~---------~~~~~~~~~ 255 (415)
+..+++.+|++|+|+|++. ......++...+.... ...|.++|+| |+|+.... +.. .........
T Consensus 99 ~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~-~~~~i~~~~~~~~~~~~~~~~ 176 (260)
T 2xtp_A 99 YLLSAPGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGS-LMDYMHDSDNKALSKLVAACG 176 (260)
T ss_dssp HHHHTTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCC-HHHHHHHCCCHHHHHHHHHTT
T ss_pred HHhcCCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCcc-HHHHHHhcchHHHHHHHHHhC
Confidence 5567889999999999985 5555554444443310 1457777777 99997532 222 111222222
Q ss_pred C----CccEEEcccCCCCCHHHHHHHHHhhCCCCC-CCCCCCCccccCCch
Q 014942 256 D----VDEVIPVSAKYGHGVEDIRDWILTKLPLGP-AYYPKFQDIVSEHPE 301 (415)
Q Consensus 256 ~----~~~i~~vSA~~g~gv~eL~~~L~~~l~~~~-~~~~~~~~~~t~~~~ 301 (415)
. +.+ +++||++|.|+++++++|.+.++..+ +.|+. +..++.|.
T Consensus 177 ~~~~~~~~-~~~SA~~~~gv~~l~~~i~~~~~~~~~~~~~~--~~~~~~~~ 224 (260)
T 2xtp_A 177 GRICAFNN-RAEGSNQDDQVKELMDCIEDLLMEKNGDHYTN--GLYSLIQR 224 (260)
T ss_dssp TCEEECCT-TCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCC--HHHHHC--
T ss_pred CeEEEecC-cccccccHHHHHHHHHHHHHHHHhCCCCcCCH--HHHHHHHH
Confidence 1 222 89999999999999999999998776 77776 66666655
No 26
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.88 E-value=6.3e-22 Score=175.39 Aligned_cols=158 Identities=16% Similarity=0.206 Sum_probs=111.4
Q ss_pred CCCCccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHH
Q 014942 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (415)
Q Consensus 111 ~~~~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~ 190 (415)
+..+..+|+++|.+|||||||+|+|++..+.......+.+.. .+...+..+.+|||||. ..+..+ +.
T Consensus 17 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~----~~~~~~~~~~i~Dt~G~--~~~~~~-------~~ 83 (181)
T 2h17_A 17 RGSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVE----EIVINNTRFLMWDIGGQ--ESLRSS-------WN 83 (181)
T ss_dssp ----CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSCE----EEEETTEEEEEEEESSS--GGGTCG-------GG
T ss_pred CCCceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceeeE----EEEECCEEEEEEECCCC--HhHHHH-------HH
Confidence 344667999999999999999999999887655555554432 23336689999999995 333322 34
Q ss_pred hhhcccceEEEEecCCCCC--chHHHHHHHHhccc-CCCCCEEEEEeCCCCCChhHHHHHHHHHhh---cCCCccEEEcc
Q 014942 191 SAGINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVS 264 (415)
Q Consensus 191 ~~~~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~-~~~~piilV~NK~Dl~~~~~~~~~~~~~~~---~~~~~~i~~vS 264 (415)
.++..+|++++|+|++++. .....++...+... ..+.|+++|+||+|+.......+..+.+.. .....+++++|
T Consensus 84 ~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~S 163 (181)
T 2h17_A 84 TYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACC 163 (181)
T ss_dssp GGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECB
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCceEEEEcc
Confidence 5688999999999998763 44455565555432 267999999999999764323333332211 11224789999
Q ss_pred cCCCCCHHHHHHHHHhh
Q 014942 265 AKYGHGVEDIRDWILTK 281 (415)
Q Consensus 265 A~~g~gv~eL~~~L~~~ 281 (415)
|++|.|+++++++|.+.
T Consensus 164 a~~g~gi~~l~~~l~~~ 180 (181)
T 2h17_A 164 ALTGEGLCQGLEWMMSR 180 (181)
T ss_dssp TTTTBTHHHHHHHHHTC
T ss_pred CCCCcCHHHHHHHHHhh
Confidence 99999999999999865
No 27
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.88 E-value=4.5e-22 Score=172.76 Aligned_cols=158 Identities=17% Similarity=0.166 Sum_probs=106.3
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEE--EeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~--~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~ 191 (415)
+..+|+++|.+|||||||+|+|++..+. .....|+....... +......+.+|||||. ..+..+ +..
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~--~~~~~~-------~~~ 70 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFV--EKYDPTIEDSYRKQVEVDCQQCMLEILDTAGT--EQFTAM-------RDL 70 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCC--CSCCCCSEEEEEEEEESSSCEEEEEEEEECSS--CSSTTH-------HHH
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCC--CCCCCCccceEEEEEEECCEEEEEEEEECCCh--HHHHHH-------HHH
Confidence 4568999999999999999999987653 23333443333332 3334568999999995 333333 233
Q ss_pred hhcccceEEEEecCCCCC--chHHHHHHHHhccc-CCCCCEEEEEeCCCCCChhHH-HHHHHHHhhcCCCccEEEcccCC
Q 014942 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKY 267 (415)
Q Consensus 192 ~~~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~-~~~~piilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~ 267 (415)
++..+|++++|+|++++. .....++..+.... ..+.|+++|+||+|+.....+ ......+....+..+++++||++
T Consensus 71 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 150 (167)
T 1c1y_A 71 YMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKS 150 (167)
T ss_dssp HHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTT
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCC
Confidence 467899999999998643 23333333333211 257999999999999754322 12222233333345899999999
Q ss_pred CCCHHHHHHHHHhhC
Q 014942 268 GHGVEDIRDWILTKL 282 (415)
Q Consensus 268 g~gv~eL~~~L~~~l 282 (415)
|.|+++++++|.+.+
T Consensus 151 ~~gi~~l~~~l~~~i 165 (167)
T 1c1y_A 151 KINVNEIFYDLVRQI 165 (167)
T ss_dssp TBSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999998765
No 28
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.88 E-value=5.2e-22 Score=177.94 Aligned_cols=162 Identities=19% Similarity=0.189 Sum_probs=110.8
Q ss_pred CCCCCccEEEEEecCCCCHHHHHHHHhCCceeee--eCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHH
Q 014942 110 HPNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIV--TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMK 187 (415)
Q Consensus 110 ~~~~~~~~V~ivG~~~vGKSSLln~l~~~~~~~~--~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~ 187 (415)
.+....++|+|+|.+|||||||+|+|++..+..+ ....+ .....+...+..+.+|||||. ..+..+
T Consensus 12 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~----~~~~~~~~~~~~~~i~Dt~G~--~~~~~~------ 79 (199)
T 4bas_A 12 GQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVG----YNVETFEKGRVAFTVFDMGGA--KKFRGL------ 79 (199)
T ss_dssp ----CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSS----EEEEEEEETTEEEEEEEECCS--GGGGGG------
T ss_pred cCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccc----eeEEEEEeCCEEEEEEECCCC--HhHHHH------
Confidence 4455677999999999999999999999887643 22223 222334577889999999995 333332
Q ss_pred HHHhhhcccceEEEEecCCCCC--chHHHHHHHHhcccC--------CCCCEEEEEeCCCCCChhHHHHHHHHHhh----
Q 014942 188 NVRSAGINADCIVVLVDACKAP--ERIDEILEEGVGDHK--------DKLPILLVLNKKDLIKPGEIAKKLEWYEK---- 253 (415)
Q Consensus 188 ~~~~~~~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~--------~~~piilV~NK~Dl~~~~~~~~~~~~~~~---- 253 (415)
+..++..+|++|+|+|++++. .....++..++.... .+.|+++|+||+|+.......+....+..
T Consensus 80 -~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~ 158 (199)
T 4bas_A 80 -WETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLM 158 (199)
T ss_dssp -GGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHH
T ss_pred -HHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhc
Confidence 345588999999999998764 344455655544311 27899999999999865333322222210
Q ss_pred cCCCccEEEcccCCCCCHHHHHHHHHhhCCC
Q 014942 254 FTDVDEVIPVSAKYGHGVEDIRDWILTKLPL 284 (415)
Q Consensus 254 ~~~~~~i~~vSA~~g~gv~eL~~~L~~~l~~ 284 (415)
.....++++|||++|.||++++++|.+.+..
T Consensus 159 ~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 189 (199)
T 4bas_A 159 GDHPFVIFASNGLKGTGVHEGFSWLQETASR 189 (199)
T ss_dssp TTSCEEEEECBTTTTBTHHHHHHHHHHHHHH
T ss_pred cCCeeEEEEeeCCCccCHHHHHHHHHHHHHH
Confidence 1233589999999999999999999987643
No 29
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.88 E-value=9.4e-22 Score=176.04 Aligned_cols=156 Identities=20% Similarity=0.182 Sum_probs=109.7
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~ 193 (415)
+..+|+++|++|||||||+++|.+..+....+..+.+ ...+..++..+.+|||||. ..+..+ +..++
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~----~~~~~~~~~~~~i~Dt~G~--~~~~~~-------~~~~~ 88 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPT----SEELAIGNIKFTTFDLGGH--IQARRL-------WKDYF 88 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCE----EEEEEETTEEEEEEECCCS--GGGTTS-------GGGGC
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCccccCCCCC----eEEEEECCEEEEEEECCCC--HHHHHH-------HHHHH
Confidence 4569999999999999999999988765443333333 3344556789999999995 333322 34557
Q ss_pred cccceEEEEecCCCCC--chHHHHHHHHhccc-CCCCCEEEEEeCCCCCChhHHHHHHHHHhhc----------CCCccE
Q 014942 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEKF----------TDVDEV 260 (415)
Q Consensus 194 ~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~-~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~----------~~~~~i 260 (415)
+.+|++++|+|++++. .....++...+... ..+.|+++|+||+|+.......+..+.+... ....++
T Consensus 89 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (190)
T 1m2o_B 89 PEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEV 168 (190)
T ss_dssp TTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSSCCC---CCSSCCEEE
T ss_pred hcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCccccccccccccceEEE
Confidence 8999999999998764 34445555554421 2679999999999997633333333333221 133579
Q ss_pred EEcccCCCCCHHHHHHHHHhhC
Q 014942 261 IPVSAKYGHGVEDIRDWILTKL 282 (415)
Q Consensus 261 ~~vSA~~g~gv~eL~~~L~~~l 282 (415)
++|||++|.|+++++++|.+.+
T Consensus 169 ~~~Sa~~g~gi~~l~~~l~~~l 190 (190)
T 1m2o_B 169 FMCSVVMRNGYLEAFQWLSQYI 190 (190)
T ss_dssp EECBTTTTBSHHHHHHHHHTTC
T ss_pred EEeECCcCCCHHHHHHHHHhhC
Confidence 9999999999999999998753
No 30
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.88 E-value=1.9e-22 Score=211.12 Aligned_cols=211 Identities=18% Similarity=0.109 Sum_probs=136.0
Q ss_pred CCccEEEEEecCCCCHHHHHHHHhCCceeeeeC------------------------------CCCceEEeEEEEEeCCC
Q 014942 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTN------------------------------KPQTTRHRILGICSGPE 162 (415)
Q Consensus 113 ~~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~------------------------------~~~tt~~~~~~~~~~~~ 162 (415)
....+|+++|++|+|||||+|+|++....+... .+|+|.+.....+...+
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 345699999999999999999999775432221 25677776666777788
Q ss_pred eeEEEEeCCCCchhhhhhHhHHHHHHHHhhhcccceEEEEecCCCC-------CchHHHHHHHHhcccCCCC-CEEEEEe
Q 014942 163 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKA-------PERIDEILEEGVGDHKDKL-PILLVLN 234 (415)
Q Consensus 163 ~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~-------~~~~~~~l~~~l~~~~~~~-piilV~N 234 (415)
.++.||||||+.. +...+..++..+|++|+|+|++++ ...+.......+.. .+. |+|+|+|
T Consensus 245 ~~~~iiDTPG~e~---------f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~--lgi~~iIVVvN 313 (611)
T 3izq_1 245 ANFTIVDAPGHRD---------FVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS--LGIHNLIIAMN 313 (611)
T ss_dssp CEEEEEECCSSSC---------HHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHT--TTCCEEEEEEE
T ss_pred ceEEEEECCCCcc---------cHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHH--cCCCeEEEEEe
Confidence 8999999999632 345566778999999999999864 22344444444444 344 4999999
Q ss_pred CCCCCCh--hHHHHHH----HHHhhcC---CCccEEEcccCCCCCHHHH---------------HHHHHhhCCCCCCCCC
Q 014942 235 KKDLIKP--GEIAKKL----EWYEKFT---DVDEVIPVSAKYGHGVEDI---------------RDWILTKLPLGPAYYP 290 (415)
Q Consensus 235 K~Dl~~~--~~~~~~~----~~~~~~~---~~~~i~~vSA~~g~gv~eL---------------~~~L~~~l~~~~~~~~ 290 (415)
|+|+... ....... ..+.... ...+++++||++|.|+.++ ++.|...+...| .++
T Consensus 314 KiDl~~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el~~~~~~~~Wy~g~~L~~~L~~l~~~~p-~~~ 392 (611)
T 3izq_1 314 KMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKIS-KEN 392 (611)
T ss_dssp CTTTTTTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSCTTSCTTCCSCCSCCHHHHHTTSCCCCC-CSS
T ss_pred cccccchhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCccccCccccccccccCCcHHHHHHHHhhccc-ccC
Confidence 9999862 2222222 2222211 1358999999999999865 333433333322 222
Q ss_pred CCCccccCCchhHHHHHHHHHHHHhhcCCCCCceEEEEEEEEEecCCCeeE
Q 014942 291 KFQDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTRPTAKDF 341 (415)
Q Consensus 291 ~~~~~~t~~~~~~~i~eiireki~~~~~~eipys~~v~i~~~~~~~~~~~~ 341 (415)
. ...++.|.++.+.+++|-. .....|-....++..|..+.+..+.
T Consensus 393 p--~~~~~~p~r~~V~~v~~~~----~~~g~g~v~~G~V~~G~lk~Gd~v~ 437 (611)
T 3izq_1 393 E--GINKDDPFLFSVLEIIPSK----KTSNDLALVSGKLESGSIQPGESLT 437 (611)
T ss_dssp S--CCSCCSCCEEECCEEECCS----SSCSSSSEEEEEEEESEECTTCEEE
T ss_pred c--ccccccchhhheeeeeccC----ccCCCeeEEEEEEEeceeccCCEEE
Confidence 2 3456778777676654200 0002455677888888887665443
No 31
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.87 E-value=4.7e-22 Score=175.31 Aligned_cols=162 Identities=18% Similarity=0.218 Sum_probs=109.1
Q ss_pred CCccEEEEEecCCCCHHHHHHHHhCCceeeee-CCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHh
Q 014942 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVT-NKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (415)
Q Consensus 113 ~~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~-~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~ 191 (415)
.+..+|+++|.+|||||||+|+|++..+.... ...+.+.......+......+.+|||||. ..+..+ +..
T Consensus 10 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~-------~~~ 80 (181)
T 2efe_B 10 SINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQ--ERYHSL-------APM 80 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCS--GGGGGG-------THH
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCC--hhhhhh-------hHH
Confidence 35569999999999999999999987764221 22222333222233344568999999994 344433 334
Q ss_pred hhcccceEEEEecCCCCC--chHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHH--HHHHHHHhhcCCCccEEEcccCC
Q 014942 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI--AKKLEWYEKFTDVDEVIPVSAKY 267 (415)
Q Consensus 192 ~~~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~i~~vSA~~ 267 (415)
+++.+|++|+|+|++++. .....++..+......+.|+++|+||+|+.....+ ......... .+ .+++++||++
T Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~-~~-~~~~~~Sa~~ 158 (181)
T 2efe_B 81 YYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQE-NG-LFFMETSAKT 158 (181)
T ss_dssp HHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHH-TT-CEEEECCSSS
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHH-cC-CEEEEEECCC
Confidence 478999999999998653 33334444443332357899999999999754321 222222222 23 4799999999
Q ss_pred CCCHHHHHHHHHhhCCCC
Q 014942 268 GHGVEDIRDWILTKLPLG 285 (415)
Q Consensus 268 g~gv~eL~~~L~~~l~~~ 285 (415)
|.|+++++++|.+.++..
T Consensus 159 g~gi~~l~~~l~~~~~~~ 176 (181)
T 2efe_B 159 ATNVKEIFYEIARRLPRV 176 (181)
T ss_dssp CTTHHHHHHHHHHTCC--
T ss_pred CCCHHHHHHHHHHHHHhc
Confidence 999999999999988753
No 32
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.87 E-value=3.8e-22 Score=173.78 Aligned_cols=161 Identities=16% Similarity=0.199 Sum_probs=110.8
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceee-eeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI-VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~-~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~ 192 (415)
+..+|+++|.+|||||||+|+|++..+.. .....+++.......+......+.+|||||. ..+..+ +..+
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~--~~~~~~-------~~~~ 75 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGL--ERFRAL-------APMY 75 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCS--GGGGGG-------THHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCc--hhhhcc-------cHhh
Confidence 45699999999999999999999887532 2344444544444444445578999999996 333333 2344
Q ss_pred hcccceEEEEecCCCCC--chHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHH-HHHHHHHhhcCCCccEEEcccCCCC
Q 014942 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGH 269 (415)
Q Consensus 193 ~~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g~ 269 (415)
+..+|++++|+|++++. .....++..+........|+++|+||+|+.....+ ......+....+ .+++++||++|.
T Consensus 76 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~ 154 (170)
T 1z0j_A 76 YRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIH-AIFVETSAKNAI 154 (170)
T ss_dssp HTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTT-CEEEECBTTTTB
T ss_pred CcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcC-CEEEEEeCCCCc
Confidence 78999999999998754 22333333333222367899999999999754322 222222333233 489999999999
Q ss_pred CHHHHHHHHHhhCCC
Q 014942 270 GVEDIRDWILTKLPL 284 (415)
Q Consensus 270 gv~eL~~~L~~~l~~ 284 (415)
|+++++++|.+.++.
T Consensus 155 ~i~~l~~~i~~~i~~ 169 (170)
T 1z0j_A 155 NINELFIEISRRIPS 169 (170)
T ss_dssp SHHHHHHHHHHHCCC
T ss_pred CHHHHHHHHHHHHhc
Confidence 999999999998763
No 33
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.87 E-value=1.3e-22 Score=177.30 Aligned_cols=161 Identities=29% Similarity=0.365 Sum_probs=105.1
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~ 193 (415)
+..+|+++|++|||||||+|+|.+..+. ++..+++|.+.....+...+..+.+|||||............+ ...++
T Consensus 2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~---~~~~~ 77 (165)
T 2wji_A 2 KSYEIALIGNPNVGKSTIFNALTGENVY-IGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEII---ARDYI 77 (165)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHCCSSS-CC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSHHHHH---HHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCee-ccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcchhHHH---HHHHH
Confidence 3468999999999999999999987653 4566777766666666666789999999996432111111111 12223
Q ss_pred --cccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHHHHHHHhhcCCCccEEEcccCCCCCH
Q 014942 194 --INADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGV 271 (415)
Q Consensus 194 --~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gv 271 (415)
..+|++++|+|+++. .....++.. +.. .+.|+++|+||+|+.....+......+....+ .+++++||++|.|+
T Consensus 78 ~~~~~~~~i~v~D~~~~-~~~~~~~~~-~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~SA~~~~~v 152 (165)
T 2wji_A 78 INEKPDLVVNIVDATAL-ERNLYLTLQ-LME--MGANLLLALNKMDLAKSLGIEIDVDKLEKILG-VKVVPLSAAKKMGI 152 (165)
T ss_dssp HHHCCSEEEEEEETTCH-HHHHHHHHH-HHH--TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHT-SCEEECBGGGTBSH
T ss_pred hcCCCCEEEEEecCCch-hHhHHHHHH-HHh--cCCCEEEEEEchHhccccChhhHHHHHHHHhC-CCEEEEEcCCCCCH
Confidence 379999999999763 223333333 333 57999999999998533211101112222122 47999999999999
Q ss_pred HHHHHHHHhhCC
Q 014942 272 EDIRDWILTKLP 283 (415)
Q Consensus 272 ~eL~~~L~~~l~ 283 (415)
++++++|.+.+.
T Consensus 153 ~~l~~~l~~~~~ 164 (165)
T 2wji_A 153 EELKKAISIAVK 164 (165)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHhh
Confidence 999999998764
No 34
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.87 E-value=2.1e-22 Score=203.55 Aligned_cols=169 Identities=21% Similarity=0.263 Sum_probs=119.7
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhh--hhHhHHHHHHHHh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI--HMLDSMMMKNVRS 191 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~--~~l~~~~~~~~~~ 191 (415)
...+|+++|++|||||||+|+|++.....++..+++|++.....+..++..+.+|||||+..... ..++.........
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~ 253 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALK 253 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHH
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHHH
Confidence 45699999999999999999999998877889999999988877888888999999999632111 1112222223345
Q ss_pred hhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChhH--HHHHHHHHhh---cCCCccEEEcccC
Q 014942 192 AGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE--IAKKLEWYEK---FTDVDEVIPVSAK 266 (415)
Q Consensus 192 ~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~--~~~~~~~~~~---~~~~~~i~~vSA~ 266 (415)
+++.+|++|+|+|++++....+..+...+.. .++|+++|+||+|+..... ..+..+.+.. .....+++++||+
T Consensus 254 ~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~--~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~ 331 (436)
T 2hjg_A 254 AIDRSEVVAVVLDGEEGIIEQDKRIAGYAHE--AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSAL 331 (436)
T ss_dssp HHHHCSEEEEEEETTTCCCHHHHHHHHHHHH--TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEECCTT
T ss_pred HHHhCCEEEEEEcCCcCCcHHHHHHHHHHHH--cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEEEecc
Confidence 6789999999999999887666666665555 6899999999999976432 2222222222 2234689999999
Q ss_pred CCCCHHHHHHHHHhhCCC
Q 014942 267 YGHGVEDIRDWILTKLPL 284 (415)
Q Consensus 267 ~g~gv~eL~~~L~~~l~~ 284 (415)
+|.|++++++.+.+.+..
T Consensus 332 tg~~v~~l~~~i~~~~~~ 349 (436)
T 2hjg_A 332 TKKRIHTLMPAIIKASEN 349 (436)
T ss_dssp TCTTGGGHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHH
Confidence 999999999999987754
No 35
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.87 E-value=1.5e-21 Score=170.39 Aligned_cols=158 Identities=16% Similarity=0.218 Sum_probs=111.3
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~ 193 (415)
+..+|+++|.+|||||||+|+|++..+....+..+ .....+...+..+.+|||||. ..+..+ +..++
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~----~~~~~~~~~~~~~~~~Dt~G~--~~~~~~-------~~~~~ 72 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVVTTIPTIG----FNVETVTYKNLKFQVWDLGGL--TSIRPY-------WRCYY 72 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSS----EEEEEEEETTEEEEEEEECCC--GGGGGG-------GGGGC
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCcCCcCc----cceEEEEECCEEEEEEECCCC--hhhhHH-------HHHHh
Confidence 45699999999999999999999877642222222 222334556889999999995 333322 34567
Q ss_pred cccceEEEEecCCCCC--chHHHHHHHHhccc-CCCCCEEEEEeCCCCCChhHHHHHHHHHhh---cCCCccEEEcccCC
Q 014942 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVSAKY 267 (415)
Q Consensus 194 ~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~-~~~~piilV~NK~Dl~~~~~~~~~~~~~~~---~~~~~~i~~vSA~~ 267 (415)
..+|++++|+|++++. .....++...+... ..+.|+++|+||+|+............+.. .....+++++||++
T Consensus 73 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 152 (171)
T 1upt_A 73 SNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATK 152 (171)
T ss_dssp TTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTT
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceEEEECcCCC
Confidence 8999999999998763 44555665555432 157899999999999865333333333221 11223799999999
Q ss_pred CCCHHHHHHHHHhhCCC
Q 014942 268 GHGVEDIRDWILTKLPL 284 (415)
Q Consensus 268 g~gv~eL~~~L~~~l~~ 284 (415)
|.|+++++++|.+.+..
T Consensus 153 ~~gi~~l~~~l~~~i~~ 169 (171)
T 1upt_A 153 GTGLDEAMEWLVETLKS 169 (171)
T ss_dssp CTTHHHHHHHHHHHHHT
T ss_pred CcCHHHHHHHHHHHHhh
Confidence 99999999999987753
No 36
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.87 E-value=3.5e-22 Score=173.79 Aligned_cols=160 Identities=21% Similarity=0.195 Sum_probs=108.0
Q ss_pred ccEEEEEecCCCCHHHHHHHHhCCceee-eeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhh
Q 014942 115 SGYVAVLGKPNVGKSTLANQMIGQKLSI-VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~~~~~~~-~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~ 193 (415)
..+|+++|++|||||||+|+|++..+.. .....+.+.......+......+.+|||||. ..+..+ +..++
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~--~~~~~~-------~~~~~ 73 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQ--ERFASL-------APXYY 73 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCS--GGGGGG-------HHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCC--hhhhhh-------hhhhh
Confidence 4589999999999999999999877542 1223333333333333444568999999995 333333 34457
Q ss_pred cccceEEEEecCCCCC--chHHHHHHHHhcccCCCCCEEEEEeCCCCCCh---hHH-HHHHHHHhhcCCCccEEEcccCC
Q 014942 194 INADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKP---GEI-AKKLEWYEKFTDVDEVIPVSAKY 267 (415)
Q Consensus 194 ~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~---~~~-~~~~~~~~~~~~~~~i~~vSA~~ 267 (415)
+.+|++++|+|++++. .....++..+......+.|+++|+||+|+... ..+ ......+....+ .+++++||++
T Consensus 74 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~ 152 (170)
T 1ek0_A 74 RNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKG-LLFFETSAKT 152 (170)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHT-CEEEECCTTT
T ss_pred ccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcC-CEEEEEeCCC
Confidence 8999999999998753 33334444444333367899999999998643 111 112222222222 3799999999
Q ss_pred CCCHHHHHHHHHhhCCC
Q 014942 268 GHGVEDIRDWILTKLPL 284 (415)
Q Consensus 268 g~gv~eL~~~L~~~l~~ 284 (415)
|.|+++++++|.+.++.
T Consensus 153 ~~gi~~l~~~l~~~i~~ 169 (170)
T 1ek0_A 153 GENVNDVFLGIGEKIPL 169 (170)
T ss_dssp CTTHHHHHHHHHTTSCC
T ss_pred CCCHHHHHHHHHHHHhh
Confidence 99999999999988753
No 37
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.87 E-value=1e-21 Score=170.37 Aligned_cols=155 Identities=18% Similarity=0.172 Sum_probs=108.0
Q ss_pred EEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhccc
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~a 196 (415)
+|+++|++|||||||+|+|++..+.. ..| |.......+...+..+.+|||||. ..+.. .+..++..+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~~~~--~~~--t~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~-------~~~~~~~~~ 68 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGEIVT--TIP--TIGFNVETVEYKNISFTVWDVGGQ--DKIRP-------LWRHYFQNT 68 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCSSC--CCC--CSSCCEEEEECSSCEEEEEECCCC--GGGHH-------HHHHHTTTC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCcCc--ccC--cCceeEEEEEECCEEEEEEEcCCC--hhhHH-------HHHHHhccC
Confidence 79999999999999999999876542 222 222223345567789999999995 33322 244568999
Q ss_pred ceEEEEecCCCCC--chHHHHHHHHhcc-cCCCCCEEEEEeCCCCCChhHHHHHHHHHhh---cCCCccEEEcccCCCCC
Q 014942 197 DCIVVLVDACKAP--ERIDEILEEGVGD-HKDKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVSAKYGHG 270 (415)
Q Consensus 197 D~ii~VvD~~~~~--~~~~~~l~~~l~~-~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~---~~~~~~i~~vSA~~g~g 270 (415)
|++++|+|++++. .....++...+.. ...+.|+++|+||+|+............+.. .....+++++||++|.|
T Consensus 69 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 148 (164)
T 1r8s_A 69 QGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDG 148 (164)
T ss_dssp SEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCcccccCccEEEEEcccCCCcC
Confidence 9999999998763 4444555555443 1257899999999999764333333332221 11234789999999999
Q ss_pred HHHHHHHHHhhCCC
Q 014942 271 VEDIRDWILTKLPL 284 (415)
Q Consensus 271 v~eL~~~L~~~l~~ 284 (415)
+++++++|.+.+..
T Consensus 149 i~~l~~~l~~~i~~ 162 (164)
T 1r8s_A 149 LYEGLDWLSNQLRN 162 (164)
T ss_dssp HHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999988753
No 38
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.87 E-value=7.5e-23 Score=187.34 Aligned_cols=166 Identities=19% Similarity=0.213 Sum_probs=118.5
Q ss_pred CCCccEEEEEecCCCCHHHHHHHHhCCc-eeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHH
Q 014942 112 NHKSGYVAVLGKPNVGKSTLANQMIGQK-LSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (415)
Q Consensus 112 ~~~~~~V~ivG~~~vGKSSLln~l~~~~-~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~ 190 (415)
..+..+|+++|.+|||||||+|+|+... .......++++.......+...+..+.+|||||. ..+..+..
T Consensus 12 ~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~~~------- 82 (221)
T 3gj0_A 12 PQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ--EKFGGLRD------- 82 (221)
T ss_dssp CCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSG--GGTSCCCH-------
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCh--HHHhHHHH-------
Confidence 3456799999999999999999966444 3445677888887777666777789999999994 44444322
Q ss_pred hhhcccceEEEEecCCCCC--chHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHHHHHHHhhcCCCccEEEcccCCC
Q 014942 191 SAGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYG 268 (415)
Q Consensus 191 ~~~~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g 268 (415)
.++..+|++|+|+|++++. .....|+..+... ..+.|+++|+||+|+................ + .+++++||++|
T Consensus 83 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-~-~~~~~~Sa~~~ 159 (221)
T 3gj0_A 83 GYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV-CENIPIVLCGNKVDIKDRKVKAKSIVFHRKK-N-LQYYDISAKSN 159 (221)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHH-STTCCEEEEEECTTSSSCSSCGGGCCHHHHH-T-CEEEECBGGGT
T ss_pred HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHh-CCCCCEEEEEECCccccccccHHHHHHHHHc-C-CEEEEEeCCCC
Confidence 3477999999999998753 3333444444332 2579999999999997543221111111111 2 47999999999
Q ss_pred CCHHHHHHHHHhhCCCCCCCC
Q 014942 269 HGVEDIRDWILTKLPLGPAYY 289 (415)
Q Consensus 269 ~gv~eL~~~L~~~l~~~~~~~ 289 (415)
.|+++++++|.+.+...++..
T Consensus 160 ~gi~~l~~~l~~~l~~~~~~~ 180 (221)
T 3gj0_A 160 YNFEKPFLWLARKLIGDPNLE 180 (221)
T ss_dssp BTTTHHHHHHHHHHHTCTTCC
T ss_pred CCHHHHHHHHHHHHHhCcccc
Confidence 999999999999887665543
No 39
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.87 E-value=2.4e-22 Score=204.23 Aligned_cols=167 Identities=28% Similarity=0.388 Sum_probs=118.6
Q ss_pred CCCCccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHH
Q 014942 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (415)
Q Consensus 111 ~~~~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~ 190 (415)
+.++.++|+|+|.+|||||||+|+|++..+..+.+.+++|++.......+.+..+.+|||||+. .....+...+...+.
T Consensus 19 ~~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~-~~~~~~~~~~~~~~~ 97 (456)
T 4dcu_A 19 SHMGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGID-IGDEPFLAQIRQQAE 97 (456)
T ss_dssp ----CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC-------CCHHHHHHHHH
T ss_pred hhcCCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCC-CcchHHHHHHHHHHH
Confidence 3456779999999999999999999999988889999999999988888889999999999974 233334555667778
Q ss_pred hhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHHHHHHHhhcCCCccEEEcccCCCCC
Q 014942 191 SAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHG 270 (415)
Q Consensus 191 ~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~g 270 (415)
.++..+|++|+|+|+..+....+.++.+.++. .++|+++|+||+|+..... ...+.+. .++..++++||++|.|
T Consensus 98 ~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~--~~~pvilV~NK~D~~~~~~--~~~e~~~--lg~~~~~~iSA~~g~g 171 (456)
T 4dcu_A 98 IAMDEADVIIFMVNGREGVTAADEEVAKILYR--TKKPVVLAVNKLDNTEMRA--NIYDFYS--LGFGEPYPISGTHGLG 171 (456)
T ss_dssp HHHHHCSEEEEEEESSSCSCHHHHHHHHHHTT--CCSCEEEEEECC-----------CCSGG--GSSSSEEECCTTTCTT
T ss_pred hhHhhCCEEEEEEeCCCCCChHHHHHHHHHHH--cCCCEEEEEECccchhhhh--hHHHHHH--cCCCceEEeecccccc
Confidence 88999999999999999888888999988887 7899999999999864321 1111111 2344678999999999
Q ss_pred HHHHHHHHHhhCCC
Q 014942 271 VEDIRDWILTKLPL 284 (415)
Q Consensus 271 v~eL~~~L~~~l~~ 284 (415)
+.+|++.+.+.++.
T Consensus 172 v~~L~~~i~~~l~~ 185 (456)
T 4dcu_A 172 LGDLLDAVAEHFKN 185 (456)
T ss_dssp HHHHHHHHHTTGGG
T ss_pred hHHHHHHHHhhccc
Confidence 99999999988764
No 40
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.87 E-value=1.4e-21 Score=174.33 Aligned_cols=160 Identities=19% Similarity=0.224 Sum_probs=111.4
Q ss_pred CCccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhh
Q 014942 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (415)
Q Consensus 113 ~~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~ 192 (415)
.+..+|+++|.+|||||||+|+|++....... .. +|.......+...+..+.+|||||. ..+..+ +..+
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~-~~-~t~~~~~~~~~~~~~~~~l~Dt~G~--~~~~~~-------~~~~ 87 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQN-IL-PTIGFSIEKFKSSSLSFTVFDMSGQ--GRYRNL-------WEHY 87 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGGCCSS-CC-CCSSEEEEEEECSSCEEEEEEECCS--TTTGGG-------GGGG
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCCC-cC-CccceeEEEEEECCEEEEEEECCCC--HHHHHH-------HHHH
Confidence 35679999999999999999999988732222 22 2223334455666789999999995 333322 3456
Q ss_pred hcccceEEEEecCCCC--CchHHHHHHHHhcccC---CCCCEEEEEeCCCCCChhHHHHHHHHHh--hc-CCCccEEEcc
Q 014942 193 GINADCIVVLVDACKA--PERIDEILEEGVGDHK---DKLPILLVLNKKDLIKPGEIAKKLEWYE--KF-TDVDEVIPVS 264 (415)
Q Consensus 193 ~~~aD~ii~VvD~~~~--~~~~~~~l~~~l~~~~---~~~piilV~NK~Dl~~~~~~~~~~~~~~--~~-~~~~~i~~vS 264 (415)
+..+|++|+|+|++++ ......++..++.... .+.|+++|+||+|+.......+..+.+. .. ....+++++|
T Consensus 88 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 167 (190)
T 2h57_A 88 YKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASD 167 (190)
T ss_dssp GGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECB
T ss_pred HhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCceEEEEcc
Confidence 7899999999999875 3444455555554322 4789999999999976433333333332 11 1235799999
Q ss_pred cCCCCCHHHHHHHHHhhCC
Q 014942 265 AKYGHGVEDIRDWILTKLP 283 (415)
Q Consensus 265 A~~g~gv~eL~~~L~~~l~ 283 (415)
|++|.|+++++++|.+.+.
T Consensus 168 a~~~~gi~~l~~~l~~~i~ 186 (190)
T 2h57_A 168 AIKGEGLQEGVDWLQDQIQ 186 (190)
T ss_dssp TTTTBTHHHHHHHHHHHC-
T ss_pred CCCCcCHHHHHHHHHHHHH
Confidence 9999999999999998875
No 41
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.87 E-value=2.1e-21 Score=173.18 Aligned_cols=159 Identities=16% Similarity=0.183 Sum_probs=110.3
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~ 193 (415)
+..+|+|+|.+|||||||+|+|++..+.. ....|.... ...+...+..+.+|||||. ..+.. .+..++
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~--~~~~t~~~~-~~~~~~~~~~~~l~Dt~G~--~~~~~-------~~~~~~ 88 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASGQFNE--DMIPTVGFN-MRKITKGNVTIKLWDIGGQ--PRFRS-------MWERYC 88 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCC--SCCCCCSEE-EEEEEETTEEEEEEEECCS--HHHHT-------THHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHHcCCCCC--ccCCCCcee-EEEEEeCCEEEEEEECCCC--HhHHH-------HHHHHH
Confidence 45699999999999999999999877641 111222111 2234567889999999995 33322 244557
Q ss_pred cccceEEEEecCCCCC--chHHHHHHHHhccc-CCCCCEEEEEeCCCCCChhHHHHHHHHHhh---cCCCccEEEcccCC
Q 014942 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVSAKY 267 (415)
Q Consensus 194 ~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~-~~~~piilV~NK~Dl~~~~~~~~~~~~~~~---~~~~~~i~~vSA~~ 267 (415)
..+|++|+|+|+++.. .....++..++... ..+.|+++|+||+|+............+.. .....+++++||++
T Consensus 89 ~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~ 168 (188)
T 1zd9_A 89 RGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKE 168 (188)
T ss_dssp TTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTT
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChhhhccCCeeEEEEECCC
Confidence 8999999999998653 44445565555432 267999999999999764332333332221 11234789999999
Q ss_pred CCCHHHHHHHHHhhCCC
Q 014942 268 GHGVEDIRDWILTKLPL 284 (415)
Q Consensus 268 g~gv~eL~~~L~~~l~~ 284 (415)
|.|+++++++|.+.+..
T Consensus 169 g~gv~~l~~~l~~~~~~ 185 (188)
T 1zd9_A 169 KDNIDITLQWLIQHSKS 185 (188)
T ss_dssp CTTHHHHHHHHHHTCC-
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999998864
No 42
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.87 E-value=1.2e-21 Score=171.97 Aligned_cols=161 Identities=16% Similarity=0.119 Sum_probs=106.5
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCC--CeeEEEEeCCCCchhhhhhHhHHHHHHHHh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~--~~~l~liDtpG~~~~~~~~l~~~~~~~~~~ 191 (415)
+..+|+++|.+|||||||+|+|++..+.. ...+..+.......+... ...+.+|||||. ..+. ..+..
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~-------~~~~~ 75 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTNKFDT-QLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ--ERFR-------SLRTP 75 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCC-----CCSEEEEEEEEEETTEEEEEEEEECCCC--GGGH-------HHHGG
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCceeeeEEEEEEEECCEEEEEEEEeCCCc--hhhh-------hhHHH
Confidence 45699999999999999999999876542 222333333333333333 368999999995 3332 23456
Q ss_pred hhcccceEEEEecCCCCC--chHHHHHHHHhccc----CCCCCEEEEEeCCCCCChhHHHHHHHHHhhcCCCccEEEccc
Q 014942 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDH----KDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSA 265 (415)
Q Consensus 192 ~~~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~----~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA 265 (415)
++..+|++++|+|++++. .....++..+.... ..+.|+++|+||+|+............+.......+++++||
T Consensus 76 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 155 (177)
T 1wms_A 76 FYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSA 155 (177)
T ss_dssp GGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHHTTCCCEEECCT
T ss_pred HHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHHhcCCceEEEEeC
Confidence 688999999999998754 22333333332211 157899999999999743222222222322233458999999
Q ss_pred CCCCCHHHHHHHHHhhCCC
Q 014942 266 KYGHGVEDIRDWILTKLPL 284 (415)
Q Consensus 266 ~~g~gv~eL~~~L~~~l~~ 284 (415)
++|.|+++++++|.+.+..
T Consensus 156 ~~~~gi~~l~~~l~~~~~~ 174 (177)
T 1wms_A 156 KDATNVAAAFEEAVRRVLA 174 (177)
T ss_dssp TTCTTHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 9999999999999987653
No 43
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.87 E-value=4.1e-22 Score=175.56 Aligned_cols=160 Identities=17% Similarity=0.133 Sum_probs=106.7
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCC--CeeEEEEeCCCCchhhhhhHhHHHHHHHHh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~--~~~l~liDtpG~~~~~~~~l~~~~~~~~~~ 191 (415)
+..+|+++|.+|||||||+|+|++..+......+.++.+.....+... ...+.+|||||. ..+. ..+..
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~--~~~~-------~~~~~ 79 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQ--ERFR-------SVTHA 79 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC-----------------C
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCc--HHHH-------HHHHH
Confidence 456999999999999999999998877533334444444333333333 458999999994 3322 23556
Q ss_pred hhcccceEEEEecCCCCC--chHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHH--HHHHHHHhhcCCCccEEEcccCC
Q 014942 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI--AKKLEWYEKFTDVDEVIPVSAKY 267 (415)
Q Consensus 192 ~~~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~i~~vSA~~ 267 (415)
++..+|++++|+|++++. .....++..+......+.|+++|+||+|+.....+ ......... .+ .+++++||++
T Consensus 80 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-~~-~~~~~~Sa~~ 157 (180)
T 2g6b_A 80 YYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKE-YG-LPFMETSAKT 157 (180)
T ss_dssp CGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHH-HT-CCEEECCTTT
T ss_pred HccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHH-cC-CeEEEEeCCC
Confidence 688999999999998753 23334443333322257899999999999753321 122222222 23 3799999999
Q ss_pred CCCHHHHHHHHHhhCCC
Q 014942 268 GHGVEDIRDWILTKLPL 284 (415)
Q Consensus 268 g~gv~eL~~~L~~~l~~ 284 (415)
|.|+++++++|.+.+..
T Consensus 158 ~~gi~~l~~~l~~~~~~ 174 (180)
T 2g6b_A 158 GLNVDLAFTAIAKELKR 174 (180)
T ss_dssp CTTHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999987754
No 44
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.87 E-value=2e-21 Score=174.16 Aligned_cols=159 Identities=18% Similarity=0.181 Sum_probs=109.1
Q ss_pred CCccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhh
Q 014942 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (415)
Q Consensus 113 ~~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~ 192 (415)
.+..+|+++|.+|||||||+|+|++..+....+ |.......+...+..+.+|||||. +.+..+ +..+
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~-------~~~~ 93 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGEIVTTIP----TIGFNVETVEYKNICFTVWDVGGQ--DKIRPL-------WRHY 93 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSCCEEEEE----ETTEEEEEEEETTEEEEEEECC-------CTT-------HHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCCccccCC----cCceeEEEEEECCEEEEEEECCCC--HhHHHH-------HHHH
Confidence 356799999999999999999999887653222 222223345557789999999995 333322 3345
Q ss_pred hcccceEEEEecCCCCC--chHHHHHHHHhccc-CCCCCEEEEEeCCCCCChhHHHHHHHHHhh---cCCCccEEEcccC
Q 014942 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVSAK 266 (415)
Q Consensus 193 ~~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~-~~~~piilV~NK~Dl~~~~~~~~~~~~~~~---~~~~~~i~~vSA~ 266 (415)
+..+|++++|+|++++. .....++...+... ..+.|+++|+||+|+.......+....+.. .....+++++||+
T Consensus 94 ~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~ 173 (192)
T 2b6h_A 94 FQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCAT 173 (192)
T ss_dssp HHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTT
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEECcCC
Confidence 78999999999998763 44445555554431 257999999999999765333333332221 1123478999999
Q ss_pred CCCCHHHHHHHHHhhCCC
Q 014942 267 YGHGVEDIRDWILTKLPL 284 (415)
Q Consensus 267 ~g~gv~eL~~~L~~~l~~ 284 (415)
+|.|+++++++|.+.+..
T Consensus 174 ~g~gi~~l~~~l~~~i~~ 191 (192)
T 2b6h_A 174 QGTGLYDGLDWLSHELSK 191 (192)
T ss_dssp TTBTHHHHHHHHHHHTTT
T ss_pred CcCCHHHHHHHHHHHHhc
Confidence 999999999999988753
No 45
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.87 E-value=8.7e-22 Score=176.05 Aligned_cols=160 Identities=18% Similarity=0.140 Sum_probs=110.3
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCC--eeEEEEeCCCCchhhhhhHhHHHHHHHHh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~l~liDtpG~~~~~~~~l~~~~~~~~~~ 191 (415)
...+|+|+|.+|||||||+|+|++..+.. ...+.++.+.....+...+ ..+.+|||||. ..+..+ +..
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~-------~~~ 84 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADDTYTE-SYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ--ERFRTI-------TSS 84 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCS-CCCCCSSEEEEEEEEEETTEEEEEEEEEECCS--GGGCTT-------HHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCC-CCCCcccceEEEEEEEECCEEEEEEEEECCCc--Hhhhhh-------HHH
Confidence 45699999999999999999999877642 3344444444444444443 67999999994 343333 334
Q ss_pred hhcccceEEEEecCCCCC--chHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHH-HHHHHHhhcCCCccEEEcccCCC
Q 014942 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYG 268 (415)
Q Consensus 192 ~~~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~i~~vSA~~g 268 (415)
++..+|++|+|+|++++. .....++..+......+.|+++|+||+|+.....+. .....+....+ .+++++||++|
T Consensus 85 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~g 163 (196)
T 3tkl_A 85 YYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLG-IPFLETSAKNA 163 (196)
T ss_dssp HHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTT-CCEEEECTTTC
T ss_pred HHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcC-CcEEEEeCCCC
Confidence 578999999999998743 233344433333323578999999999997543321 12222333333 48999999999
Q ss_pred CCHHHHHHHHHhhCCC
Q 014942 269 HGVEDIRDWILTKLPL 284 (415)
Q Consensus 269 ~gv~eL~~~L~~~l~~ 284 (415)
.|+++++++|.+.+..
T Consensus 164 ~gv~~l~~~l~~~i~~ 179 (196)
T 3tkl_A 164 TNVEQSFMTMAAEIKK 179 (196)
T ss_dssp TTHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999987643
No 46
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.87 E-value=6.4e-22 Score=176.62 Aligned_cols=167 Identities=19% Similarity=0.216 Sum_probs=113.2
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceee-eeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI-VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~-~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~ 192 (415)
+..+|+|+|.+|||||||+|+|++..+.. .....+.+.......+......+.+|||||. ..+..+ +..+
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~-------~~~~ 84 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQ--ERFRTL-------TPSY 84 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSS--GGGCCS-------HHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCc--hhhhhh-------hHHH
Confidence 45699999999999999999999877542 1222233333333333444578999999995 333333 3345
Q ss_pred hcccceEEEEecCCCCC--chHHHHHHHHhccc-CCCCCEEEEEeCCCCCChhH-HHHHHHHHhhcCCCccEEEcccCCC
Q 014942 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGE-IAKKLEWYEKFTDVDEVIPVSAKYG 268 (415)
Q Consensus 193 ~~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~-~~~~piilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~i~~vSA~~g 268 (415)
++.+|++|+|+|++++. .....++..+.... ..+.|+++|+||+|+..... .......... .+ .+++++||++|
T Consensus 85 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-~~-~~~~~~Sa~~~ 162 (195)
T 1x3s_A 85 YRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARK-HS-MLFIEASAKTC 162 (195)
T ss_dssp HTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHH-TT-CEEEECCTTTC
T ss_pred hccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHHHH-cC-CEEEEecCCCC
Confidence 78999999999998753 33344444444322 15789999999999954321 1222222222 23 47999999999
Q ss_pred CCHHHHHHHHHhhCCCCCCCCCC
Q 014942 269 HGVEDIRDWILTKLPLGPAYYPK 291 (415)
Q Consensus 269 ~gv~eL~~~L~~~l~~~~~~~~~ 291 (415)
.|+++++++|.+.+...++.++.
T Consensus 163 ~gi~~l~~~l~~~~~~~~~~~~~ 185 (195)
T 1x3s_A 163 DGVQCAFEELVEKIIQTPGLWES 185 (195)
T ss_dssp TTHHHHHHHHHHHHHTSGGGTCC
T ss_pred CCHHHHHHHHHHHHHhhhhhhcc
Confidence 99999999999988876665554
No 47
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.87 E-value=4.4e-22 Score=187.30 Aligned_cols=163 Identities=23% Similarity=0.287 Sum_probs=116.2
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~ 193 (415)
+..+|+++|.+|||||||+|+|++..+. +...|++|.......+...+..+.+|||||............+...... .
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~~-~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~-~ 81 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTGTKQY-VANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLL-K 81 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHTTCEE-EEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHH-H
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCc-ccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHh-h
Confidence 4568999999999999999999998875 6788999988888888888889999999997432221222222222111 1
Q ss_pred cccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHHHHHHHhhcCCCccEEEcccCCCCCHHH
Q 014942 194 INADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVED 273 (415)
Q Consensus 194 ~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gv~e 273 (415)
..+|++++|+|+++.. ....++.. +.. .+.|+++|+||+|+.....+......+....+ .+++++||++|.|+++
T Consensus 82 ~~~d~ii~V~D~t~~~-~~~~~~~~-l~~--~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg-~~vi~~SA~~g~gi~e 156 (258)
T 3a1s_A 82 GDADLVILVADSVNPE-QSLYLLLE-ILE--MEKKVILAMTAIDEAKKTGMKIDRYELQKHLG-IPVVFTSSVTGEGLEE 156 (258)
T ss_dssp SCCSEEEEEEETTSCH-HHHHHHHH-HHT--TTCCEEEEEECHHHHHHTTCCBCHHHHHHHHC-SCEEECCTTTCTTHHH
T ss_pred cCCCEEEEEeCCCchh-hHHHHHHH-HHh--cCCCEEEEEECcCCCCccchHHHHHHHHHHcC-CCEEEEEeeCCcCHHH
Confidence 6899999999998743 22233333 333 57999999999998543222111122222223 4899999999999999
Q ss_pred HHHHHHhhCC
Q 014942 274 IRDWILTKLP 283 (415)
Q Consensus 274 L~~~L~~~l~ 283 (415)
|+++|.+.+.
T Consensus 157 l~~~i~~~~~ 166 (258)
T 3a1s_A 157 LKEKIVEYAQ 166 (258)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 9999998764
No 48
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.87 E-value=2.1e-22 Score=191.16 Aligned_cols=165 Identities=27% Similarity=0.297 Sum_probs=118.7
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhh----hhHhHHHHHHH
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI----HMLDSMMMKNV 189 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~----~~l~~~~~~~~ 189 (415)
+..+|+++|.+|||||||+|+|++... .++..+++|.+.....+...+..+.+|||||+..... ..+...+...
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~-~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~- 79 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQ-RVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACH- 79 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCE-EEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHH-
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCc-ccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHH-
Confidence 456899999999999999999999885 5788999999988888888888999999999743221 1222222221
Q ss_pred HhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHHHHHHHhhcCCCccEEEcccCCCC
Q 014942 190 RSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGH 269 (415)
Q Consensus 190 ~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~ 269 (415)
......+|++|+|+|+++. ... ..+...+.. .+.|+++|+||+|+.....+......+....+ .+++++||++|.
T Consensus 80 ~~~~~~~d~ii~VvD~~~~-~~~-~~~~~~l~~--~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg-~~~i~~SA~~g~ 154 (274)
T 3i8s_A 80 YILSGDADLLINVVDASNL-ERN-LYLTLQLLE--LGIPCIVALNMLDIAEKQNIRIEIDALSARLG-CPVIPLVSTRGR 154 (274)
T ss_dssp HHHHTCCSEEEEEEEGGGH-HHH-HHHHHHHHH--HTCCEEEEEECHHHHHHTTEEECHHHHHHHHT-SCEEECCCGGGH
T ss_pred HHhhcCCCEEEEEecCCCh-HHH-HHHHHHHHh--cCCCEEEEEECccchhhhhHHHHHHHHHHhcC-CCEEEEEcCCCC
Confidence 1224799999999999863 222 223333333 47999999999998643321111122222223 489999999999
Q ss_pred CHHHHHHHHHhhCCCC
Q 014942 270 GVEDIRDWILTKLPLG 285 (415)
Q Consensus 270 gv~eL~~~L~~~l~~~ 285 (415)
|+++|+++|.+.++..
T Consensus 155 gi~el~~~i~~~~~~~ 170 (274)
T 3i8s_A 155 GIEALKLAIDRYKANE 170 (274)
T ss_dssp HHHHHHHHHHTCCCCC
T ss_pred CHHHHHHHHHHHHhcC
Confidence 9999999999998764
No 49
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.87 E-value=1.8e-21 Score=172.83 Aligned_cols=159 Identities=18% Similarity=0.203 Sum_probs=112.0
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~ 193 (415)
+..+|+++|.+|||||||+|+|++.......+..+ .....+..++..+.+|||||. ..+. ..+..++
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~----~~~~~~~~~~~~~~~~Dt~G~--~~~~-------~~~~~~~ 83 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLG----FNIKTLEHRGFKLNIWDVGGQ--KSLR-------SYWRNYF 83 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSS----EEEEEEEETTEEEEEEEECCS--HHHH-------TTGGGGC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCCCCcccccCc----cceEEEEECCEEEEEEECCCC--HhHH-------HHHHHHh
Confidence 56799999999999999999999877322222222 222334446789999999995 2222 2345668
Q ss_pred cccceEEEEecCCCCC--chHHHHHHHHhccc-CCCCCEEEEEeCCCCCChhHHHHHHHHHhh---cCCCccEEEcccCC
Q 014942 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVSAKY 267 (415)
Q Consensus 194 ~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~-~~~~piilV~NK~Dl~~~~~~~~~~~~~~~---~~~~~~i~~vSA~~ 267 (415)
..+|++++|+|++++. .....++...+... ..+.|+++|+||+|+.......+..+.+.. .....+++++||++
T Consensus 84 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 163 (186)
T 1ksh_A 84 ESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVT 163 (186)
T ss_dssp TTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTT
T ss_pred cCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhccCCceEEEEeeCCC
Confidence 8999999999998764 34445555554431 257999999999999765444333333321 12234799999999
Q ss_pred CCCHHHHHHHHHhhCCCC
Q 014942 268 GHGVEDIRDWILTKLPLG 285 (415)
Q Consensus 268 g~gv~eL~~~L~~~l~~~ 285 (415)
|.|+++++++|.+.+++.
T Consensus 164 ~~gi~~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 164 GEDLLPGIDWLLDDISSR 181 (186)
T ss_dssp CTTHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHhc
Confidence 999999999999988653
No 50
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.87 E-value=6.5e-22 Score=173.76 Aligned_cols=160 Identities=19% Similarity=0.230 Sum_probs=108.7
Q ss_pred CCccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCC--CeeEEEEeCCCCchhhhhhHhHHHHHHHH
Q 014942 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (415)
Q Consensus 113 ~~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~--~~~l~liDtpG~~~~~~~~l~~~~~~~~~ 190 (415)
.+..+|+++|.+|||||||+|+|++..+.. ...+..+.+.....+... ...+.+|||||. ..+..+ +.
T Consensus 12 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~--~~~~~~-------~~ 81 (179)
T 2y8e_A 12 LRKFKLVFLGEQSVGKTSLITRFMYDSFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ--ERFRSL-------IP 81 (179)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSCCCS-SCCCCCSEEEEEEEEEETTEEEEEEEEEECCS--GGGGGG-------SH
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCceeeEEEEEEEEECCeEEEEEEEECCCc--HHHHHH-------HH
Confidence 355699999999999999999999877642 223344444433333333 358999999995 333333 23
Q ss_pred hhhcccceEEEEecCCCCC--chHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHH--HHHHHHHhhcCCCccEEEcccC
Q 014942 191 SAGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI--AKKLEWYEKFTDVDEVIPVSAK 266 (415)
Q Consensus 191 ~~~~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~i~~vSA~ 266 (415)
.++..+|++++|+|++++. .....++..+......+.|+++|+||+|+.....+ .......... + .+++++||+
T Consensus 82 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~-~~~~~~Sa~ 159 (179)
T 2y8e_A 82 SYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKEL-N-VMFIETSAK 159 (179)
T ss_dssp HHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHH-T-CEEEEEBTT
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHc-C-CeEEEEeCC
Confidence 4467899999999998643 33444444443322357899999999999753322 2222222222 2 489999999
Q ss_pred CCCCHHHHHHHHHhhCCC
Q 014942 267 YGHGVEDIRDWILTKLPL 284 (415)
Q Consensus 267 ~g~gv~eL~~~L~~~l~~ 284 (415)
+|.|+++++++|.+.++.
T Consensus 160 ~~~~i~~l~~~l~~~~~~ 177 (179)
T 2y8e_A 160 AGYNVKQLFRRVAAALPG 177 (179)
T ss_dssp TTBSHHHHHHHHHHTCC-
T ss_pred CCCCHHHHHHHHHHHHhh
Confidence 999999999999998764
No 51
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.87 E-value=8.1e-22 Score=179.80 Aligned_cols=167 Identities=18% Similarity=0.165 Sum_probs=110.3
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceee-eeCCCCceEEeEEEEEeCCC-eeEEEEeCCCCchhhhhhHhHHHHHHHHh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI-VTNKPQTTRHRILGICSGPE-YQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~-~~~~~~tt~~~~~~~~~~~~-~~l~liDtpG~~~~~~~~l~~~~~~~~~~ 191 (415)
...+|+|+|.+|||||||+|+|++..+.. .....+++............ ..+.+|||||. ..+..+.. .
T Consensus 10 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~--~~~~~~~~-------~ 80 (218)
T 4djt_A 10 LTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQ--EKKAVLKD-------V 80 (218)
T ss_dssp CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSG--GGTSCCCH-------H
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCc--hhhchHHH-------H
Confidence 45699999999999999999999876542 23334444333332222222 67999999994 34443332 3
Q ss_pred hhcccceEEEEecCCCCC--chHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHH-HHHHHHhhcCCCccEEEcccCCC
Q 014942 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYG 268 (415)
Q Consensus 192 ~~~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~i~~vSA~~g 268 (415)
++..+|++|+|+|++++. .....|+..+......+.|+++|+||+|+.....+. .....+... ...+++++||++|
T Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~g 159 (218)
T 4djt_A 81 YYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKG-KNYEYFEISAKTA 159 (218)
T ss_dssp HHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTT-CCCEEEEEBTTTT
T ss_pred HhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHH-cCCcEEEEecCCC
Confidence 367899999999998754 233334433333223568999999999997653322 222233333 3358999999999
Q ss_pred CCHHHHHHHHHhhCCCCCCCCC
Q 014942 269 HGVEDIRDWILTKLPLGPAYYP 290 (415)
Q Consensus 269 ~gv~eL~~~L~~~l~~~~~~~~ 290 (415)
.|+++++++|.+.+.......+
T Consensus 160 ~gv~~l~~~l~~~~~~~~~~~~ 181 (218)
T 4djt_A 160 HNFGLPFLHLARIFTGRPDLIF 181 (218)
T ss_dssp BTTTHHHHHHHHHHHCCTTCCB
T ss_pred CCHHHHHHHHHHHHhccccccc
Confidence 9999999999998876554443
No 52
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.86 E-value=5.1e-22 Score=174.79 Aligned_cols=157 Identities=17% Similarity=0.170 Sum_probs=107.7
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCC--eeEEEEeCCCCchhhhhhHhHHHHHHHHh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~l~liDtpG~~~~~~~~l~~~~~~~~~~ 191 (415)
+..+|+++|.+|||||||+|+|++..+. ....+..+.+.....+...+ ..+.+|||||. ..+..+ +..
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~-------~~~ 77 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADNTFS-GSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQ--ERFRTI-------TST 77 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSCC----CCTTTBSEEEEEEEEEETTEEEEEEEEEETTG--GGCSSC-------CGG
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCC-CccCCCceeEEEEEEEEECCEEEEEEEEcCCCc--hhhhhh-------HHH
Confidence 4569999999999999999999998875 34445555555444444444 68999999994 333322 344
Q ss_pred hhcccceEEEEecCCCCC--chHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHH--HHHHHHHhhcCCCccEEEcccCC
Q 014942 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI--AKKLEWYEKFTDVDEVIPVSAKY 267 (415)
Q Consensus 192 ~~~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~i~~vSA~~ 267 (415)
++..+|++++|+|++++. .....++..+... ..+.|+++|+||+|+.....+ ......... .+ .+++++||++
T Consensus 78 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~-~~-~~~~~~Sa~~ 154 (181)
T 3tw8_B 78 YYRGTHGVIVVYDVTSAESFVNVKRWLHEINQN-CDDVCRILVGNKNDDPERKVVETEDAYKFAGQ-MG-IQLFETSAKE 154 (181)
T ss_dssp GGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH-CTTSEEEEEEECTTCGGGCCSCHHHHHHHHHH-HT-CCEEECBTTT
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHh-CCCCCEEEEEECCCCchhcccCHHHHHHHHHH-cC-CeEEEEECCC
Confidence 578999999999998753 2233344333322 257899999999998754322 122222222 22 3799999999
Q ss_pred CCCHHHHHHHHHhhCC
Q 014942 268 GHGVEDIRDWILTKLP 283 (415)
Q Consensus 268 g~gv~eL~~~L~~~l~ 283 (415)
|.|+++++++|.+.+.
T Consensus 155 ~~gi~~l~~~l~~~~~ 170 (181)
T 3tw8_B 155 NVNVEEMFNCITELVL 170 (181)
T ss_dssp TBSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999988764
No 53
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.86 E-value=9e-22 Score=173.17 Aligned_cols=161 Identities=18% Similarity=0.255 Sum_probs=111.4
Q ss_pred CCCCccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCC--eeEEEEeCCCCchhhhhhHhHHHHHH
Q 014942 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKN 188 (415)
Q Consensus 111 ~~~~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~l~liDtpG~~~~~~~~l~~~~~~~ 188 (415)
+..+..+|+++|.+|||||||+|+|++..+. ....+|+.......+...+ ..+.+|||||. ..+..+.
T Consensus 5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~--~~~~~~~------ 74 (181)
T 2fn4_A 5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFV--SDYDPTIEDSYTKICSVDGIPARLDILDTAGQ--EEFGAMR------ 74 (181)
T ss_dssp CSSCEEEEEEEECTTSSHHHHHHHHHHSSCC--SSCCTTCCEEEEEEEEETTEEEEEEEEECCCT--TTTSCCH------
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhCcCc--cccCCCcCceEEEEEEECCEEEEEEEEECCCc--hhhHHHH------
Confidence 3446679999999999999999999988653 4555665554444444443 57899999995 3343332
Q ss_pred HHhhhcccceEEEEecCCCCC--chHHHHHHHHhccc-CCCCCEEEEEeCCCCCChhHH-HHHHHHHhhcCCCccEEEcc
Q 014942 189 VRSAGINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVS 264 (415)
Q Consensus 189 ~~~~~~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~-~~~~piilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vS 264 (415)
..++..+|++++|+|+++.. .....++..+++.. ..+.|+++|+||+|+.....+ ......+....+ .+++++|
T Consensus 75 -~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~S 152 (181)
T 2fn4_A 75 -EQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHH-VAYFEAS 152 (181)
T ss_dssp -HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTT-CEEEECB
T ss_pred -HHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcC-CeEEEec
Confidence 33467899999999998743 33444444443321 257899999999999754322 122222322223 4899999
Q ss_pred cCCCCCHHHHHHHHHhhCC
Q 014942 265 AKYGHGVEDIRDWILTKLP 283 (415)
Q Consensus 265 A~~g~gv~eL~~~L~~~l~ 283 (415)
|++|.|+++++++|.+.+.
T Consensus 153 a~~~~gv~~l~~~l~~~~~ 171 (181)
T 2fn4_A 153 AKLRLNVDEAFEQLVRAVR 171 (181)
T ss_dssp TTTTBSHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999998764
No 54
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.86 E-value=1.5e-21 Score=174.88 Aligned_cols=160 Identities=18% Similarity=0.201 Sum_probs=102.9
Q ss_pred CCccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEe--CCCeeEEEEeCCCCchhhhhhHhHHHHHHHH
Q 014942 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (415)
Q Consensus 113 ~~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~--~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~ 190 (415)
.+..+|+|+|.+|||||||+|+|++..+... ..+..+.+.....+. .....+.+|||||. ..+..+ +.
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~--~~~~~~-------~~ 93 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEA-CKSTVGVDFKIKTVELRGKKIRLQIWDTAGQ--ERFNSI-------TS 93 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC---------CCTTEEEEEEEEEETTEEEEEEEEEECCS--GGGHHH-------HH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcC-CCCccceeEEEEEEEECCeEEEEEEEeCCCc--HHHHHH-------HH
Confidence 3456899999999999999999998876532 222222233222333 33468999999995 333322 44
Q ss_pred hhhcccceEEEEecCCCCC--chHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHH-HHHHHHHhhcCCCccEEEcccCC
Q 014942 191 SAGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKY 267 (415)
Q Consensus 191 ~~~~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~ 267 (415)
.++..+|++|+|+|++++. .....|+..+......+.|+++|+||+|+.....+ ......+.......+++++||++
T Consensus 94 ~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~ 173 (192)
T 2il1_A 94 AYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKD 173 (192)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTT
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCC
Confidence 5578999999999998754 22333332222222257899999999999754322 12223333333345899999999
Q ss_pred CCCHHHHHHHHHhhC
Q 014942 268 GHGVEDIRDWILTKL 282 (415)
Q Consensus 268 g~gv~eL~~~L~~~l 282 (415)
|.|+++++++|.+.+
T Consensus 174 g~gi~~l~~~l~~~i 188 (192)
T 2il1_A 174 NFNVDEIFLKLVDDI 188 (192)
T ss_dssp TBSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999998765
No 55
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.86 E-value=5.3e-22 Score=174.50 Aligned_cols=158 Identities=17% Similarity=0.214 Sum_probs=110.4
Q ss_pred CCccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhh
Q 014942 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (415)
Q Consensus 113 ~~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~ 192 (415)
.+.++|+++|.+|||||||+|+|++..+. ....+++|.+.....+...+..+.+|||||. ..+..+ +..+
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~--~~~~~~-------~~~~ 75 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVT-EQEAGGITQHIGAYQVTVNDKKITFLDTPGH--EAFTTM-------RARG 75 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSS-CSSCCSSSTTCCCCEEEETTEEEEESCCCSS--SSSSCS-------CCSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCccc-cCCCCceeEeeeEEEEEeCCceEEEEECCCC--HHHHHH-------HHHH
Confidence 35679999999999999999999988765 2334444444333344556778999999995 333322 2345
Q ss_pred hcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHHHHHHHhhcC-------CCccEEEccc
Q 014942 193 GINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFT-------DVDEVIPVSA 265 (415)
Q Consensus 193 ~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~-------~~~~i~~vSA 265 (415)
+..+|++++|+|++++...........+.. .+.|+++|+||+|+.... .......+.... ...+++++||
T Consensus 76 ~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~--~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 152 (178)
T 2lkc_A 76 AQVTDIVILVVAADDGVMPQTVEAINHAKA--ANVPIIVAINKMDKPEAN-PDRVMQELMEYNLVPEEWGGDTIFCKLSA 152 (178)
T ss_dssp CCCCCEEEEEEETTCCCCHHHHHHHHHHGG--GSCCEEEEEETTTSSCSC-HHHHHHHHTTTTCCBTTTTSSEEEEECCS
T ss_pred HhhCCEEEEEEECCCCCcHHHHHHHHHHHh--CCCCEEEEEECccCCcCC-HHHHHHHHHhcCcChhHcCCcccEEEEec
Confidence 788999999999987664444333344443 579999999999997632 112222222211 1247999999
Q ss_pred CCCCCHHHHHHHHHhhCC
Q 014942 266 KYGHGVEDIRDWILTKLP 283 (415)
Q Consensus 266 ~~g~gv~eL~~~L~~~l~ 283 (415)
++|.|+++++++|.+.+.
T Consensus 153 ~~~~gv~~l~~~l~~~~~ 170 (178)
T 2lkc_A 153 KTKEGLDHLLEMILLVSE 170 (178)
T ss_dssp SSSHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhhh
Confidence 999999999999988664
No 56
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.86 E-value=1.2e-21 Score=170.70 Aligned_cols=158 Identities=19% Similarity=0.161 Sum_probs=103.5
Q ss_pred ccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeC--CCeeEEEEeCCCCchhhhhhHhHHHHHHHHhh
Q 014942 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG--PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~--~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~ 192 (415)
..+|+++|.+|||||||+|+|++..+.. ...+..+.+.....+.. ....+.+|||||. ..+..+ +..+
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~--~~~~~~-------~~~~ 72 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKFNP-SFITTIGIDFKIKTVDINGKKVKLQIWDTAGQ--ERFRTI-------TTAY 72 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCC--------CCEEEEEEESSSCEEEEEEECCTTG--GGTSCC-------CHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCC-CCCCccceeEEEEEEEECCEEEEEEEEeCCCC--hhhhhh-------HHHH
Confidence 3589999999999999999999877642 22333333333333333 3468999999994 343333 2344
Q ss_pred hcccceEEEEecCCCCC--chHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHHHHHHHhhcCCCccEEEcccCCCCC
Q 014942 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHG 270 (415)
Q Consensus 193 ~~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~g 270 (415)
+..+|++++|+|++++. .....++..+......+.|+++|+||+|+............+....+ .+++++||++|.|
T Consensus 73 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~g 151 (170)
T 1g16_A 73 YRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELG-IPFIESSAKNDDN 151 (170)
T ss_dssp HTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHHHHHHHHHT-CCEEECBTTTTBS
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcCccCHHHHHHHHHHcC-CeEEEEECCCCCC
Confidence 78999999999998653 23334444433332357899999999999542221222222222223 3799999999999
Q ss_pred HHHHHHHHHhhCC
Q 014942 271 VEDIRDWILTKLP 283 (415)
Q Consensus 271 v~eL~~~L~~~l~ 283 (415)
+++++++|.+.+.
T Consensus 152 v~~l~~~l~~~~~ 164 (170)
T 1g16_A 152 VNEIFFTLAKLIQ 164 (170)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998764
No 57
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.86 E-value=1.5e-21 Score=173.15 Aligned_cols=158 Identities=20% Similarity=0.162 Sum_probs=106.8
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCC--CeeEEEEeCCCCchhhhhhHhHHHHHHHHh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~--~~~l~liDtpG~~~~~~~~l~~~~~~~~~~ 191 (415)
+..+|+++|.+|||||||+|+|++..+. ...++++........... ...+.+|||||. ..+..+ +..
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~-------~~~ 71 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHFV--DEYDPTIEDSYRKQVVIDGETCLLDILDTAGQ--EEYSAM-------RDQ 71 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSCC--CCCCTTCCEEEEEEEEETTEEEEEEEEECCCC-----CTT-------HHH
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCCchheEEEEEEECCcEEEEEEEECCCc--HHHHHH-------HHH
Confidence 4568999999999999999999987753 444555544444433333 345788999994 344333 334
Q ss_pred hhcccceEEEEecCCCCC--chHHHHHHHHhccc-CCCCCEEEEEeCCCCCChhHHHHHHHHHhhcCCCccEEEcccCCC
Q 014942 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYG 268 (415)
Q Consensus 192 ~~~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~-~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g 268 (415)
++..+|++++|+|++++. .....++..+.... ..+.|+++|+||+|+............+....+ .+++++||++|
T Consensus 72 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~g 150 (189)
T 4dsu_A 72 YMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYG-IPFIETSAKTR 150 (189)
T ss_dssp HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHHHHT-CCEEECCTTTC
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHHHcC-CeEEEEeCCCC
Confidence 467899999999998653 23333333333211 257999999999999754322222333332223 47999999999
Q ss_pred CCHHHHHHHHHhhCC
Q 014942 269 HGVEDIRDWILTKLP 283 (415)
Q Consensus 269 ~gv~eL~~~L~~~l~ 283 (415)
.|+++++++|.+.+.
T Consensus 151 ~gi~~l~~~l~~~~~ 165 (189)
T 4dsu_A 151 QGVDDAFYTLVREIR 165 (189)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999998774
No 58
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.86 E-value=8.3e-22 Score=174.35 Aligned_cols=163 Identities=18% Similarity=0.150 Sum_probs=109.2
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEE--EeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~--~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~ 191 (415)
+..+|+++|.+|||||||+++|++..+. .....++....... +......+.+|||||. ..+..+ +..
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~-------~~~ 72 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ--EDYDRL-------RPL 72 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCC--SSCCCCSCCEEEEEEEETTEEEEEEEECCCCS--GGGTTT-------GGG
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCC--CCcCCcccceeEEEEEECCEEEEEEEEECCCC--HhHHHH-------HHH
Confidence 5569999999999999999999977653 23333333322222 3334467889999995 333322 334
Q ss_pred hhcccceEEEEecCCCCC--chHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHH-------------HHHHHhhcCC
Q 014942 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK-------------KLEWYEKFTD 256 (415)
Q Consensus 192 ~~~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~-------------~~~~~~~~~~ 256 (415)
++..+|++++|+|++++. ......+...+.....+.|+++|+||+|+........ ....+....+
T Consensus 73 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 152 (186)
T 1mh1_A 73 SYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 152 (186)
T ss_dssp GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTT
T ss_pred hccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcC
Confidence 578999999999998753 2222223333333224899999999999965422111 1112222334
Q ss_pred CccEEEcccCCCCCHHHHHHHHHhhCCCCCC
Q 014942 257 VDEVIPVSAKYGHGVEDIRDWILTKLPLGPA 287 (415)
Q Consensus 257 ~~~i~~vSA~~g~gv~eL~~~L~~~l~~~~~ 287 (415)
..+++++||++|.|+++++++|.+.+...++
T Consensus 153 ~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~ 183 (186)
T 1mh1_A 153 AVKYLECSALTQRGLKTVFDEAIRAVLCPPP 183 (186)
T ss_dssp CSEEEECCTTTCTTHHHHHHHHHHHHSCCCC
T ss_pred CcEEEEecCCCccCHHHHHHHHHHHHhcccc
Confidence 4589999999999999999999999876543
No 59
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.86 E-value=1.4e-21 Score=171.59 Aligned_cols=159 Identities=21% Similarity=0.207 Sum_probs=106.9
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeee-eCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIV-TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~-~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~ 192 (415)
+..+|+++|.+|||||||+|+|++..+... ....+.+.......+......+.+|||||. ..+..+ +..+
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~--~~~~~~-------~~~~ 84 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQ--ERFRAV-------TRSY 84 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTG--GGTCHH-------HHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCC--hHhhhh-------HHHH
Confidence 456999999999999999999998776421 122222322222233344568999999994 333332 4455
Q ss_pred hcccceEEEEecCCCCC--chHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHH--HHHHHHHhhcCCCccEEEcccCCC
Q 014942 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI--AKKLEWYEKFTDVDEVIPVSAKYG 268 (415)
Q Consensus 193 ~~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~i~~vSA~~g 268 (415)
+..+|++++|+|++++. .....++..+......+.|+++|+||+|+.....+ ....+.... .+ .+++++||++|
T Consensus 85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-~~-~~~~~~Sa~~~ 162 (179)
T 1z0f_A 85 YRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEE-NG-LLFLEASAKTG 162 (179)
T ss_dssp HHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH-TT-CEEEECCTTTC
T ss_pred hccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHH-cC-CEEEEEeCCCC
Confidence 78999999999998753 23333443333322267899999999999643222 222233322 23 48999999999
Q ss_pred CCHHHHHHHHHhhCC
Q 014942 269 HGVEDIRDWILTKLP 283 (415)
Q Consensus 269 ~gv~eL~~~L~~~l~ 283 (415)
.|+++++++|.+.+.
T Consensus 163 ~gi~~l~~~l~~~i~ 177 (179)
T 1z0f_A 163 ENVEDAFLEAAKKIY 177 (179)
T ss_dssp TTHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999988764
No 60
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.86 E-value=1.2e-21 Score=178.67 Aligned_cols=161 Identities=18% Similarity=0.157 Sum_probs=96.8
Q ss_pred CCccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEE--EeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHH
Q 014942 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (415)
Q Consensus 113 ~~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~--~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~ 190 (415)
.+..+|+++|.+|||||||+|+|++..+. .....|+....... +......+.+|||||. ..+..+ +.
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~--~~~~~~-------~~ 100 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFP--ESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQ--DDYDRL-------RP 100 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC---------CCCCCEEEEEEEEETTEEEEEEEEEC--------------------
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCC--CCCCCccceeEEEEEEECCEEEEEEEEECCCc--hhhhHH-------HH
Confidence 35679999999999999999999987764 22333333332222 2333457999999994 333322 33
Q ss_pred hhhcccceEEEEecCCCCC--chHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHHH-------------HHHHhhcC
Q 014942 191 SAGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKK-------------LEWYEKFT 255 (415)
Q Consensus 191 ~~~~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~~-------------~~~~~~~~ 255 (415)
.++..+|++|+|+|++++. ......+...+.....+.|+++|+||+|+......... ...+....
T Consensus 101 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 180 (214)
T 2j1l_A 101 LFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSV 180 (214)
T ss_dssp ----CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHT
T ss_pred HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhc
Confidence 4578999999999998653 22222233333332357999999999999765432111 12233333
Q ss_pred CCccEEEcccCCCCCHHHHHHHHHhhCCC
Q 014942 256 DVDEVIPVSAKYGHGVEDIRDWILTKLPL 284 (415)
Q Consensus 256 ~~~~i~~vSA~~g~gv~eL~~~L~~~l~~ 284 (415)
+..+++++||++|.|+++++++|.+.+..
T Consensus 181 ~~~~~~~~SA~~g~gi~el~~~l~~~~~~ 209 (214)
T 2j1l_A 181 GAVAYLECSARLHDNVHAVFQEAAEVALS 209 (214)
T ss_dssp TCSEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 44589999999999999999999987653
No 61
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.86 E-value=5.5e-23 Score=204.68 Aligned_cols=247 Identities=19% Similarity=0.213 Sum_probs=131.0
Q ss_pred EEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeC---------------------C---CeeEEEEeCCC
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG---------------------P---EYQMILYDTPG 172 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~---------------------~---~~~l~liDtpG 172 (415)
+|+|+|.||||||||+|+|++.+ ..++.+|++|++...+.... . ..++.||||||
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~-~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD-VEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC---------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCC-CcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 79999999999999999999988 56788999998877665321 1 35799999999
Q ss_pred CchhhhhhHhHHHHHHHHhhhcccceEEEEecCCCCCc----------hHH-----------------------------
Q 014942 173 IIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPE----------RID----------------------------- 213 (415)
Q Consensus 173 ~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~----------~~~----------------------------- 213 (415)
+.... .....+...+..+++.+|++++|+|++++.. +..
T Consensus 81 ~~~~a--~~~~~l~~~~l~~i~~aD~il~VvD~~~~~~~~g~~~~~~dp~~d~~~i~~EL~~~d~~~l~~~~~~~~k~~~ 158 (397)
T 1wxq_A 81 LVPGA--HEGRGLGNKFLDDLRMASALIHVVDATGKTDPEGQPTDYHDPVEDIEFLEREIDYWIYGILSKGWDKFAKRIK 158 (397)
T ss_dssp ----------------CCCSSTTCSEEEEEEETTCCBCTTSCBCSCCCHHHHHHHHHHHHHHHHHHHHHTTTHHHHSTTT
T ss_pred cccch--hhhhhHHHHHHHHHhcCCEEEEEEecccccCCCCcccCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHh
Confidence 74311 1112222334456799999999999987510 000
Q ss_pred ---------------------------------------------HHHHHHhcccCCCCCEEEEEeCCCCCChhHHHHHH
Q 014942 214 ---------------------------------------------EILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKL 248 (415)
Q Consensus 214 ---------------------------------------------~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~~~ 248 (415)
..+...+.. ..+|+++|+||+|+.....+....
T Consensus 159 ~~~~~~~~~~~~~l~g~~~~~~~~~~~l~~l~~~~~~~~~~~~e~~~l~~~~~~--~~kP~i~v~NK~D~~~~~~l~~l~ 236 (397)
T 1wxq_A 159 LQKIKLESAIAEHLSGIGVNENDVWEAMHKLNLPEDPTKWSQDDLLAFASEIRR--VNKPMVIAANKADAASDEQIKRLV 236 (397)
T ss_dssp SSCCCHHHHHHHHTGGGTCCHHHHHHHHHHTTCCSCGGGCCHHHHHHHHHHHHH--HHSCEEEEEECGGGSCHHHHHHHH
T ss_pred hcCccHHHHHHHHhcccCCCHHHHHHHHHHhccCCccccCCHHHHHHHHHhhhc--cCCCEEEEEeCccccchHHHHHHH
Confidence 000000111 348999999999987443344444
Q ss_pred HHHhhcCCCccEEEcccCCCCCHHHHHH-HHHhhCCCCCCCCCCCCccccCCchhHHHHHHHHHHHHhhcCCCCC-----
Q 014942 249 EWYEKFTDVDEVIPVSAKYGHGVEDIRD-WILTKLPLGPAYYPKFQDIVSEHPERFFVGEIIREKIFMQYRNEVP----- 322 (415)
Q Consensus 249 ~~~~~~~~~~~i~~vSA~~g~gv~eL~~-~L~~~l~~~~~~~~~~~~~~t~~~~~~~i~eiireki~~~~~~eip----- 322 (415)
+.+... ..+++++||+.+.|+.+|++ .|.+++|.+++.||. +++++++.+ +.|++||++|..+. +-+
T Consensus 237 ~~~~~~--~~~vv~iSA~~e~~l~~L~~~~l~~~~p~~~~~~~~--~~l~~~~~~--~~e~ire~~l~~~g-~~g~~~~i 309 (397)
T 1wxq_A 237 REEEKR--GYIVIPTSAAAELTLRKAAKAGFIEYIPGASEFKVL--RDMSEKQKR--ALMVIKEKVLDRFG-STGVQEVI 309 (397)
T ss_dssp HHHHHT--TCEEEEECHHHHHHHHSCSSSCCCCSCC---------------------CTTHHHHHHTSSSS-SCSHHHHH
T ss_pred HHHhhc--CCcEEEEeccchhhHHHHHhhhhhhhcCCCcccccc--ccCCHHHHH--HHHHHHHHHHHHhC-cchHHHHH
Confidence 433322 24799999999999999988 899999999999999 888887766 67889988877655 211
Q ss_pred ----ceEEEEEEEEEecCCCeeEEEEEEEEeeCC---ceeEEeecCChHHHHHHHHHHHHHHHHhCCc
Q 014942 323 ----YACQVNVVSYKTRPTAKDFIQVEIVVEKNS---QKIILIGKGGKALKLLATAARLDIEDFLQKK 383 (415)
Q Consensus 323 ----ys~~v~i~~~~~~~~~~~~i~~~~~~~r~~---q~~iiiG~~g~~i~~i~~~ar~~l~~~~~~~ 383 (415)
|...--+.-++-.+.... ....+ ...+++ ++|.++.++....-.|+++-|-+-
T Consensus 310 ~~~~~~~L~li~vft~~~~~~~-------~~~~g~~~~~~~~l-~~G~t~~d~a~~iH~d~~~~f~~a 369 (397)
T 1wxq_A 310 NRVVFDLLKLIPVYPVHDENKL-------TDQFGNVLPHVFLM-KKGSTPRDLAFKVHTDLGKGFLYA 369 (397)
T ss_dssp HHHHHTTSCEEEEEEESCC------------CCSCSSCCCEEE-ETTCCHHHHHHHHCHHHHHTEEEE
T ss_pred HHHHHHHhCCeEEEeecccccc-------cCCcCcccceeEEe-CCCCCHHHHHHHHhHHHHhhhhhh
Confidence 221111111221100000 00111 123333 789999999999999999866543
No 62
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.86 E-value=2.8e-22 Score=203.98 Aligned_cols=161 Identities=24% Similarity=0.323 Sum_probs=122.9
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhcc
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (415)
.+|+|+|.||||||||+|+|++.++.++++.++||++.....+..++..+.+|||||+...............+..++..
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~ 323 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEK 323 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHH
T ss_pred CEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHhhc
Confidence 58999999999999999999998887889999999998888888888999999999975122222222223344566889
Q ss_pred cceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHHHHHHHhhcCCCccEEEcccCCCCCHHHHH
Q 014942 196 ADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIR 275 (415)
Q Consensus 196 aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gv~eL~ 275 (415)
+|++|+|+|++++.......+++.+ .++|+++|+||+|+............. . ...+++++||++|.|+++|+
T Consensus 324 aD~vl~VvD~s~~~s~~~~~il~~l----~~~piivV~NK~DL~~~~~~~~~~~~~-~--~~~~~i~iSAktg~Gi~eL~ 396 (482)
T 1xzp_A 324 ADIVLFVLDASSPLDEEDRKILERI----KNKRYLVVINKVDVVEKINEEEIKNKL-G--TDRHMVKISALKGEGLEKLE 396 (482)
T ss_dssp CSEEEEEEETTSCCCHHHHHHHHHH----TTSSEEEEEEECSSCCCCCHHHHHHHH-T--CSTTEEEEEGGGTCCHHHHH
T ss_pred ccEEEEEecCCCCCCHHHHHHHHHh----cCCCEEEEEECcccccccCHHHHHHHh-c--CCCcEEEEECCCCCCHHHHH
Confidence 9999999999887655444444444 468999999999997542222222221 1 22479999999999999999
Q ss_pred HHHHhhCC
Q 014942 276 DWILTKLP 283 (415)
Q Consensus 276 ~~L~~~l~ 283 (415)
++|.+.+.
T Consensus 397 ~~l~~~~~ 404 (482)
T 1xzp_A 397 ESIYRETQ 404 (482)
T ss_dssp HHHHHHTH
T ss_pred HHHHHHHh
Confidence 99999765
No 63
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.86 E-value=1e-21 Score=170.36 Aligned_cols=157 Identities=18% Similarity=0.212 Sum_probs=104.7
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEE--EeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~--~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~ 191 (415)
+..+|+++|.+|||||||+|+|++..+. ....+++....... +......+.+|||||. ..+..+ +..
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~--~~~~~~-------~~~ 71 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFV--EDYEPTKADSYRKKVVLDGEEVQIDILDTAGQ--EDYAAI-------RDN 71 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----CHHH-------HHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccC--CCCCCCcceEEEEEEEECCEEEEEEEEECCCc--chhHHH-------HHH
Confidence 4568999999999999999999987753 33344443333332 2333458999999994 333322 344
Q ss_pred hhcccceEEEEecCCCCC--chHHHHHHHHhcccC-CCCCEEEEEeCCCCCChhH--HHHHHHHHhhcCCCccEEEcccC
Q 014942 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHK-DKLPILLVLNKKDLIKPGE--IAKKLEWYEKFTDVDEVIPVSAK 266 (415)
Q Consensus 192 ~~~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~-~~~piilV~NK~Dl~~~~~--~~~~~~~~~~~~~~~~i~~vSA~ 266 (415)
++..+|++++|+|++++. .....++..+..... .+.|+++|+||+|+..... ..+........ + .+++++||+
T Consensus 72 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~-~~~~~~Sa~ 149 (168)
T 1u8z_A 72 YFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQW-N-VNYVETSAK 149 (168)
T ss_dssp HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHH-T-CEEEECCTT
T ss_pred HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHc-C-CeEEEeCCC
Confidence 578899999999998653 223333333332211 4799999999999965322 22222223222 2 379999999
Q ss_pred CCCCHHHHHHHHHhhCC
Q 014942 267 YGHGVEDIRDWILTKLP 283 (415)
Q Consensus 267 ~g~gv~eL~~~L~~~l~ 283 (415)
+|.|+++++++|.+.+.
T Consensus 150 ~~~gi~~l~~~l~~~i~ 166 (168)
T 1u8z_A 150 TRANVDKVFFDLMREIR 166 (168)
T ss_dssp TCTTHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999999987653
No 64
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.86 E-value=6.8e-22 Score=200.30 Aligned_cols=163 Identities=28% Similarity=0.374 Sum_probs=117.5
Q ss_pred ccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhc
Q 014942 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (415)
..+|+++|+||||||||+|+|++..+.+++..+++|++.....+..++..+.+|||||+.. ....+.....+.+..++.
T Consensus 224 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~-~~~~ve~~gi~~~~~~~~ 302 (462)
T 3geh_A 224 GLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRE-TSDQVEKIGVERSRQAAN 302 (462)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC---------------------CCCC
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCcccc-chhHHHHHHHHHHhhhhh
Confidence 3479999999999999999999988887889999998877666777888999999999732 333344444566677889
Q ss_pred ccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHHHHHHHhhcCCCccEEEcccCCCCCHHHH
Q 014942 195 NADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDI 274 (415)
Q Consensus 195 ~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gv~eL 274 (415)
.+|++|+|+|++++.......+...+. ..|+++|+||+|+....... .........+++++||++|.|+++|
T Consensus 303 ~aD~vl~VvD~s~~~~~~~~~i~~~l~----~~piivV~NK~Dl~~~~~~~----~~~~~~~~~~~i~iSAktg~Gi~eL 374 (462)
T 3geh_A 303 TADLVLLTIDAATGWTTGDQEIYEQVK----HRPLILVMNKIDLVEKQLIT----SLEYPENITQIVHTAAAQKQGIDSL 374 (462)
T ss_dssp SCSEEEEEEETTTCSCHHHHHHHHHHT----TSCEEEEEECTTSSCGGGST----TCCCCTTCCCEEEEBTTTTBSHHHH
T ss_pred cCCEEEEEeccCCCCCHHHHHHHHhcc----CCcEEEEEECCCCCcchhhH----HHHHhccCCcEEEEECCCCCCHHHH
Confidence 999999999999888776666665553 37999999999998765432 1112223457999999999999999
Q ss_pred HHHHHhhCCCCC
Q 014942 275 RDWILTKLPLGP 286 (415)
Q Consensus 275 ~~~L~~~l~~~~ 286 (415)
+++|.+.+....
T Consensus 375 ~~~i~~~~~~~~ 386 (462)
T 3geh_A 375 ETAILEIVQTGK 386 (462)
T ss_dssp HHHHHHHHTTSS
T ss_pred HHHHHHHHhccC
Confidence 999999887543
No 65
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.86 E-value=6.4e-22 Score=171.46 Aligned_cols=157 Identities=19% Similarity=0.181 Sum_probs=103.8
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEE--eCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC--SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~--~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~ 191 (415)
+..+|+++|++|||||||+|+|++..+.. ....++.......+ ......+.+|||||. ..+..+ ...
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~--~~~~~~-------~~~ 70 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIE--KYDPTIEDFYRKEIEVDSSPSVLEILDTAGT--EQFASM-------RDL 70 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCS--CCCTTCCEEEEEEEEETTEEEEEEEEECCCT--TCCHHH-------HHH
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcc--cCCCCcceeEEEEEEECCEEEEEEEEECCCc--hhhHHH-------HHH
Confidence 45689999999999999999999877642 22333332222223 333456999999994 333332 334
Q ss_pred hhcccceEEEEecCCCCC--chHHHHHHHHhccc-CCCCCEEEEEeCCCCCChhHH-HHHHHHHhhcCCCccEEEcccCC
Q 014942 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKY 267 (415)
Q Consensus 192 ~~~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~-~~~~piilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~ 267 (415)
++..+|++++|+|++++. .....++..+.... ..+.|+++|+||+|+.....+ ......+....+ .+++++||++
T Consensus 71 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~ 149 (167)
T 1kao_A 71 YIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWG-CPFMETSAKS 149 (167)
T ss_dssp HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHT-SCEEEECTTC
T ss_pred HhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhC-CCEEEecCCC
Confidence 477899999999998743 23333443333321 157999999999998643322 111122222222 3799999999
Q ss_pred CCCHHHHHHHHHhhC
Q 014942 268 GHGVEDIRDWILTKL 282 (415)
Q Consensus 268 g~gv~eL~~~L~~~l 282 (415)
|.|+++++++|.+.+
T Consensus 150 ~~gi~~l~~~l~~~~ 164 (167)
T 1kao_A 150 KTMVDELFAEIVRQM 164 (167)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHH
Confidence 999999999998765
No 66
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.86 E-value=2.3e-21 Score=171.87 Aligned_cols=158 Identities=20% Similarity=0.168 Sum_probs=107.5
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCC--eeEEEEeCCCCchhhhhhHhHHHHHHHHh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~l~liDtpG~~~~~~~~l~~~~~~~~~~ 191 (415)
+..+|+++|.+|||||||+|+|++..+.. ...+..+.+.....+...+ ..+.+|||||. ..+. ..+..
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~--~~~~-------~~~~~ 78 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEKKFKD-DSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQ--ERFR-------SVTRS 78 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCT-TCCCCSEEEEEEEEEEETTEEEEEEEEEECCS--GGGH-------HHHHT
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCccceEEEEEEEEECCEEEEEEEEeCCCc--HHHH-------HHHHH
Confidence 45699999999999999999999877642 2233333333333333333 68999999995 3332 23556
Q ss_pred hhcccceEEEEecCCCCC--chHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHH--HHHHHHHhhcCCCccEEEcccCC
Q 014942 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI--AKKLEWYEKFTDVDEVIPVSAKY 267 (415)
Q Consensus 192 ~~~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~i~~vSA~~ 267 (415)
++..+|++|+|+|++++. .....++..+......+.|+++|+||+|+.....+ .+....... .+ .+++++||++
T Consensus 79 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-~~-~~~~~~Sa~~ 156 (186)
T 2bme_A 79 YYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQE-NE-LMFLETSALT 156 (186)
T ss_dssp TSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHH-TT-CEEEECCTTT
T ss_pred HHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHH-cC-CEEEEecCCC
Confidence 789999999999998753 22333443332222267899999999999643222 222222222 23 4899999999
Q ss_pred CCCHHHHHHHHHhhCC
Q 014942 268 GHGVEDIRDWILTKLP 283 (415)
Q Consensus 268 g~gv~eL~~~L~~~l~ 283 (415)
|.|+++++++|.+.+.
T Consensus 157 ~~gi~~l~~~l~~~~~ 172 (186)
T 2bme_A 157 GENVEEAFVQCARKIL 172 (186)
T ss_dssp CTTHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999988764
No 67
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.86 E-value=1.9e-21 Score=172.00 Aligned_cols=160 Identities=19% Similarity=0.213 Sum_probs=106.4
Q ss_pred CCCCCccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCC--CeeEEEEeCCCCchhhhhhHhHHHHH
Q 014942 110 HPNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMK 187 (415)
Q Consensus 110 ~~~~~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~--~~~l~liDtpG~~~~~~~~l~~~~~~ 187 (415)
.+..+..+|+++|.+|||||||+|+|++..+. .....++........... ...+.+|||||. ..+..+.
T Consensus 13 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~~----- 83 (183)
T 3kkq_A 13 SENLPTYKLVVVGDGGVGKSALTIQFFQKIFV--DDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQ--EEFSAMR----- 83 (183)
T ss_dssp -CCCCEEEEEEECSTTSSHHHHHHHHHHSCCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCSC--GGGCSSH-----
T ss_pred ccCCCceEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCCccceeEEEEEeCCcEEEEEEEECCCc--hhhHHHH-----
Confidence 34456679999999999999999999987653 333334333333333333 345677999994 4444332
Q ss_pred HHHhhhcccceEEEEecCCCCC--chHHHHHHHHhcc-cCCCCCEEEEEeCCCCCChhHH--HHHHHHHhhcCCCccEEE
Q 014942 188 NVRSAGINADCIVVLVDACKAP--ERIDEILEEGVGD-HKDKLPILLVLNKKDLIKPGEI--AKKLEWYEKFTDVDEVIP 262 (415)
Q Consensus 188 ~~~~~~~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~-~~~~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~i~~ 262 (415)
..+++.+|++++|+|++++. .....++..+... ...+.|+++|+||+|+.....+ .......... + .++++
T Consensus 84 --~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~-~-~~~~~ 159 (183)
T 3kkq_A 84 --EQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKY-N-IPYIE 159 (183)
T ss_dssp --HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHH-T-CCEEE
T ss_pred --HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHh-C-CeEEE
Confidence 33467899999999998753 3334444433321 1267899999999999753221 2222222222 3 57999
Q ss_pred cccC-CCCCHHHHHHHHHhhC
Q 014942 263 VSAK-YGHGVEDIRDWILTKL 282 (415)
Q Consensus 263 vSA~-~g~gv~eL~~~L~~~l 282 (415)
+||+ +|.|+++++++|.+.+
T Consensus 160 ~Sa~~~~~~v~~l~~~l~~~i 180 (183)
T 3kkq_A 160 TSAKDPPLNVDKTFHDLVRVI 180 (183)
T ss_dssp EBCSSSCBSHHHHHHHHHHHH
T ss_pred eccCCCCCCHHHHHHHHHHHH
Confidence 9999 9999999999998765
No 68
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.86 E-value=1.2e-21 Score=175.50 Aligned_cols=160 Identities=18% Similarity=0.128 Sum_probs=109.2
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeC--CCeeEEEEeCCCCchhhhhhHhHHHHHHHHh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG--PEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~--~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~ 191 (415)
+..+|+++|.+|||||||+|+|++..+. ....+|+.......... ....+.+|||||. +.+..+ +..
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~-------~~~ 90 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKGEIP--TAYVPTVFENFSHVMKYKNEEFILHLWDTAGQ--EEYDRL-------RPL 90 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCC--SSCCCCSEEEEEEEEEETTEEEEEEEEEECCS--GGGTTT-------GGG
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCCC--CccCCeeeeeeEEEEEECCEEEEEEEEECCCc--HHHHHH-------hHh
Confidence 5569999999999999999999988753 34444444443333333 3456799999994 444332 345
Q ss_pred hhcccceEEEEecCCCCCc--hHHHHHHHHhcccCCCCCEEEEEeCCCCCCh--h-HHHHHHHHHhhcCCCccEEEcccC
Q 014942 192 AGINADCIVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKP--G-EIAKKLEWYEKFTDVDEVIPVSAK 266 (415)
Q Consensus 192 ~~~~aD~ii~VvD~~~~~~--~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~--~-~~~~~~~~~~~~~~~~~i~~vSA~ 266 (415)
++..+|++|+|+|++++.. .....+...+.....+.|+++|+||+|+... . ........+....+...++++||+
T Consensus 91 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 170 (194)
T 3reg_A 91 SYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSV 170 (194)
T ss_dssp GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTT
T ss_pred hccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecC
Confidence 6889999999999987542 2212333333333367999999999999742 1 112222223333344459999999
Q ss_pred CCCCHHHHHHHHHhhCCC
Q 014942 267 YGHGVEDIRDWILTKLPL 284 (415)
Q Consensus 267 ~g~gv~eL~~~L~~~l~~ 284 (415)
+|.|+++++++|.+.+..
T Consensus 171 ~~~gi~~l~~~l~~~i~~ 188 (194)
T 3reg_A 171 AKIGLNEVFEKSVDCIFS 188 (194)
T ss_dssp TTBSHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 999999999999987754
No 69
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.86 E-value=4e-21 Score=169.82 Aligned_cols=158 Identities=15% Similarity=0.176 Sum_probs=110.5
Q ss_pred CCccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhh
Q 014942 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (415)
Q Consensus 113 ~~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~ 192 (415)
.+..+|+++|++|||||||+|+|++..+....+..+.+. ..+...+..+.+|||||.. .+..+ +..+
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~----~~~~~~~~~~~i~Dt~G~~--~~~~~-------~~~~ 82 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNV----ETLSYKNLKLNVWDLGGQT--SIRPY-------WRCY 82 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCE----EEEEETTEEEEEEEEC------CCTT-------GGGT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCccce----EEEEECCEEEEEEECCCCH--hHHHH-------HHHH
Confidence 356799999999999999999999888755555555332 2233456899999999953 22222 3456
Q ss_pred hcccceEEEEecCCCCC--chHHHHHHHHhccc-CCCCCEEEEEeCCCCCChhHHHHHHHHHhhc---CCCccEEEcccC
Q 014942 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEKF---TDVDEVIPVSAK 266 (415)
Q Consensus 193 ~~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~-~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~---~~~~~i~~vSA~ 266 (415)
+..+|++++|+|++++. .....++...+... ..+.|+++|+||+|+.......+..+.+... ....+++++||+
T Consensus 83 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~ 162 (183)
T 1moz_A 83 YADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAI 162 (183)
T ss_dssp TTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEBGG
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEEccCC
Confidence 78999999999998764 44455566555432 2678999999999997643333333333211 122478999999
Q ss_pred CCCCHHHHHHHHHhhCC
Q 014942 267 YGHGVEDIRDWILTKLP 283 (415)
Q Consensus 267 ~g~gv~eL~~~L~~~l~ 283 (415)
+|.|+++++++|.+.+.
T Consensus 163 ~~~gi~~l~~~l~~~~~ 179 (183)
T 1moz_A 163 KGEGITEGLDWLIDVIK 179 (183)
T ss_dssp GTBTHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHH
Confidence 99999999999988654
No 70
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.86 E-value=1.1e-21 Score=199.42 Aligned_cols=169 Identities=20% Similarity=0.242 Sum_probs=125.7
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhh--hhHhHHHHHHHHh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI--HMLDSMMMKNVRS 191 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~--~~l~~~~~~~~~~ 191 (415)
...+|+++|.+|||||||+|+|++.....++..+++|++.....+...+..+.+|||||+..... .............
T Consensus 194 ~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~ 273 (456)
T 4dcu_A 194 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALK 273 (456)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHHH
T ss_pred ccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHHH
Confidence 45699999999999999999999988777899999999987777777888999999999643110 0112222223445
Q ss_pred hhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChh--HHHHHHHHHhhc---CCCccEEEcccC
Q 014942 192 AGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG--EIAKKLEWYEKF---TDVDEVIPVSAK 266 (415)
Q Consensus 192 ~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~--~~~~~~~~~~~~---~~~~~i~~vSA~ 266 (415)
++..||++|+|+|++++....+..+...+.. .++|+++|+||+|+.... ...+..+.+... ....+++++||+
T Consensus 274 ~~~~ad~~llviD~~~~~~~~~~~~~~~~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~ 351 (456)
T 4dcu_A 274 AIDRSEVVAVVLDGEEGIIEQDKRIAGYAHE--AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSAL 351 (456)
T ss_dssp HHHHCSEEEEEEETTTCCCHHHHHHHHHHHH--TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEECCTT
T ss_pred HHhhCCEEEEEEeCCCCcCHHHHHHHHHHHH--cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEEEcCC
Confidence 6789999999999999888888888877776 789999999999997532 223333333332 235689999999
Q ss_pred CCCCHHHHHHHHHhhCCC
Q 014942 267 YGHGVEDIRDWILTKLPL 284 (415)
Q Consensus 267 ~g~gv~eL~~~L~~~l~~ 284 (415)
+|.|+++|+++|.+.+..
T Consensus 352 ~g~gv~~l~~~i~~~~~~ 369 (456)
T 4dcu_A 352 TKKRIHTLMPAIIKASEN 369 (456)
T ss_dssp TCTTGGGHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHH
Confidence 999999999999987754
No 71
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.86 E-value=1.3e-21 Score=174.95 Aligned_cols=159 Identities=17% Similarity=0.183 Sum_probs=107.6
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeC-CCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTN-KPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~-~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~ 192 (415)
+..+|+|+|.+|||||||+|+|++..+..... ..+.+.......+......+.+|||||.. .+..+ +..+
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~--~~~~~-------~~~~ 94 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE--RYRAI-------TSAY 94 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCC--TTCTT-------HHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCch--hhhhh-------hHHH
Confidence 45699999999999999999999887653222 22333333333344456789999999963 33332 3345
Q ss_pred hcccceEEEEecCCCCC--chHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHH-HHHHHHHhhcCCCccEEEcccCCCC
Q 014942 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGH 269 (415)
Q Consensus 193 ~~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g~ 269 (415)
+..+|++|+|+|++++. .....++..+......+.|+++|+||+|+.....+ ......+....+ .+++++||++|.
T Consensus 95 ~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 173 (193)
T 2oil_A 95 YRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNG-LLFLETSALDST 173 (193)
T ss_dssp HTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTT-CEEEEECTTTCT
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcC-CEEEEEeCCCCC
Confidence 78999999999998753 23334444444332357899999999999753221 111222222223 489999999999
Q ss_pred CHHHHHHHHHhhC
Q 014942 270 GVEDIRDWILTKL 282 (415)
Q Consensus 270 gv~eL~~~L~~~l 282 (415)
|+++++++|.+.+
T Consensus 174 gi~~l~~~l~~~i 186 (193)
T 2oil_A 174 NVELAFETVLKEI 186 (193)
T ss_dssp THHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998765
No 72
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.86 E-value=7.8e-21 Score=192.18 Aligned_cols=169 Identities=25% Similarity=0.311 Sum_probs=119.7
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhh---hhHhHHHHHHHH
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI---HMLDSMMMKNVR 190 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~---~~l~~~~~~~~~ 190 (415)
...+|+|+|++|||||||+|+|++.....+++.+++|++...+.+...+..+.+|||||+..... ..+.........
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~ 258 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVV 258 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHH
Confidence 45699999999999999999999998888899999999988888888888999999999732110 000000011233
Q ss_pred hhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChhH--HHHHHHHHhh---cCCCccEEEccc
Q 014942 191 SAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE--IAKKLEWYEK---FTDVDEVIPVSA 265 (415)
Q Consensus 191 ~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~--~~~~~~~~~~---~~~~~~i~~vSA 265 (415)
.++..+|++++|+|++.+....+..+...+.. .++|+++|+||+|+..... ..+....+.. .....+++++||
T Consensus 259 ~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA 336 (439)
T 1mky_A 259 DSIEKADVVVIVLDATQGITRQDQRMAGLMER--RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSA 336 (439)
T ss_dssp HHHHHCSEEEEEEETTTCCCHHHHHHHHHHHH--TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEECBT
T ss_pred HHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHH--cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEEEEEC
Confidence 45788999999999998776666666666655 6899999999999976432 2222222221 224468999999
Q ss_pred CCCCCHHHHHHHHHhhCCC
Q 014942 266 KYGHGVEDIRDWILTKLPL 284 (415)
Q Consensus 266 ~~g~gv~eL~~~L~~~l~~ 284 (415)
++|.|+++|++.+.+.+..
T Consensus 337 ~~g~gv~~l~~~i~~~~~~ 355 (439)
T 1mky_A 337 DKGWNIDRMIDAMNLAYAS 355 (439)
T ss_dssp TTTBSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 9999999999999987754
No 73
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.86 E-value=6.6e-22 Score=174.69 Aligned_cols=162 Identities=23% Similarity=0.233 Sum_probs=107.9
Q ss_pred CCccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCC--eeEEEEeCCCCchhhhhhHhHHHHHHHH
Q 014942 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (415)
Q Consensus 113 ~~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~l~liDtpG~~~~~~~~l~~~~~~~~~ 190 (415)
.+..+|+++|.+|||||||+|+|++..+. ....+++.......+...+ ..+.+|||||.. .+..+ ..
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~--~~~~~-------~~ 72 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFV--DSYDPTIENTFTKLITVNGQEYHLQLVDTAGQD--EYSIF-------PQ 72 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSSCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCCCC--TTCCC-------CG
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCCCC--CCCCCCccccEEEEEEECCEEEEEEEEeCCCch--hhhHH-------HH
Confidence 35679999999999999999999976653 3444444443344444443 678999999953 33322 33
Q ss_pred hhhcccceEEEEecCCCCC--chHHHHHHHHhccc-CCCCCEEEEEeCCCCCChhHH-HHHHHHHhhcCCCccEEEcccC
Q 014942 191 SAGINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAK 266 (415)
Q Consensus 191 ~~~~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~-~~~~piilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~ 266 (415)
.+++.+|++++|+|+++.. .....++..+.... ..+.|+++|+||+|+.....+ ......+....+ .+++++||+
T Consensus 73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~ 151 (181)
T 3t5g_A 73 TYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWN-AAFLESSAK 151 (181)
T ss_dssp GGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTT-CEEEECCTT
T ss_pred HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhC-CcEEEEecC
Confidence 4578999999999998643 23333433333322 157899999999999644322 122222323233 379999999
Q ss_pred CCCCHHHHHHHHHhhCCCCC
Q 014942 267 YGHGVEDIRDWILTKLPLGP 286 (415)
Q Consensus 267 ~g~gv~eL~~~L~~~l~~~~ 286 (415)
+|.|+++++++|.+.+....
T Consensus 152 ~~~~v~~l~~~l~~~~~~~~ 171 (181)
T 3t5g_A 152 ENQTAVDVFRRIILEAEKMD 171 (181)
T ss_dssp SHHHHHHHHHHHHHHHHTC-
T ss_pred CCCCHHHHHHHHHHHHHHhc
Confidence 99999999999999876543
No 74
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.86 E-value=1.6e-22 Score=208.22 Aligned_cols=231 Identities=17% Similarity=0.150 Sum_probs=146.0
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceee---------------e------eCCCCceEEeEEEEEeCCCeeEEEEeCCC
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI---------------V------TNKPQTTRHRILGICSGPEYQMILYDTPG 172 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~---------------~------~~~~~tt~~~~~~~~~~~~~~l~liDtpG 172 (415)
+.++|+|+|++|||||||+|+|++....+ + ...++.|.......+.+.+..+.||||||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG 91 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPG 91 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCC
Confidence 44689999999999999999996211100 0 11234444444455677788999999999
Q ss_pred CchhhhhhHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChhH---HHHHHH
Q 014942 173 IIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE---IAKKLE 249 (415)
Q Consensus 173 ~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~---~~~~~~ 249 (415)
+. .+. ..+..+++.+|++|+|+|++++.......++..+.. .++|+++|+||+|+..... +.++.+
T Consensus 92 ~~--df~-------~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~--~~iPiivviNK~Dl~~~~~~~~l~ei~~ 160 (528)
T 3tr5_A 92 HA--DFT-------EDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRL--RHTPIMTFINKMDRDTRPSIELLDEIES 160 (528)
T ss_dssp ST--TCC-------HHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHT--TTCCEEEEEECTTSCCSCHHHHHHHHHH
T ss_pred ch--hHH-------HHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH--cCCCEEEEEeCCCCccccHHHHHHHHHH
Confidence 63 322 235667899999999999999888777777777766 6899999999999975322 222222
Q ss_pred HHhh----------------------------------------------------------------------------
Q 014942 250 WYEK---------------------------------------------------------------------------- 253 (415)
Q Consensus 250 ~~~~---------------------------------------------------------------------------- 253 (415)
.+..
T Consensus 161 ~l~~~~~~~~~pig~~~~f~gv~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~e~~~l~~~~~~~~ 240 (528)
T 3tr5_A 161 ILRIHCAPVTWPIGMGKYFKGIYHLIEDAIYLYQPGKHERVGESERIEGINNPELDKKLGDLASELRNEIELVKGASHPF 240 (528)
T ss_dssp HHCCEEEESEEEESCGGGCCEEEETTTTEEEECCTTSSSSTTCSCEEECTTCHHHHHHHTHHHHHHHHHHHHHHHHSCCC
T ss_pred hhCCCceeeecccccCCceeEEEEeecCEEEEecCCCCCcccccccccccchHHHHHHHHHHHHHHhhhcchhhhhhhHH
Confidence 1110
Q ss_pred ------cCCCccEEEcccCCCCCHHHHHHHHHhhCCCCCCCCCCCCccccCCchhHHHHHHHHHHHHhhcCC-CCCceEE
Q 014942 254 ------FTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKFQDIVSEHPERFFVGEIIREKIFMQYRN-EVPYACQ 326 (415)
Q Consensus 254 ------~~~~~~i~~vSA~~g~gv~eL~~~L~~~l~~~~~~~~~~~~~~t~~~~~~~i~eiireki~~~~~~-eipys~~ 326 (415)
.....|++++||++|.||++|++.|.+.+|... ..+.....+.. ....+.+.++ |+...+++ .++..+.
T Consensus 241 ~~~~~~~~~~~PV~~gSA~~~~GV~~Lld~i~~~~p~p~-~~~~~~~~~~~-~~~~~~~~VF--Ki~~~~dp~~~g~l~~ 316 (528)
T 3tr5_A 241 EREGYLKGELTPIFFGSAINNFGVGELLDAFVKEAPPPQ-GRETNSRLVKP-EEEKFSGFVF--KIQANMDPGHRDRIAF 316 (528)
T ss_dssp CHHHHHTTSEEEEEECBGGGTBSHHHHHHHHHHHSCCCC-CBCBSSSCBCT-TSSSCEEEEE--EEEECCC-CCCCEEEE
T ss_pred HHHHHhcCceeEEEeccccCCccHHHHHHHHHHhCCCCC-cccccceeeCC-CcccceeEEE--EEecccCccCCceEEE
Confidence 112337899999999999999999999998632 22110011100 0111122122 22112355 7788999
Q ss_pred EEEEEEEecCCCeeEEEEEEEEeeCCceeEEee
Q 014942 327 VNVVSYKTRPTAKDFIQVEIVVEKNSQKIILIG 359 (415)
Q Consensus 327 v~i~~~~~~~~~~~~i~~~~~~~r~~q~~iiiG 359 (415)
++|.+|+.+.+..+++......+|.++...+.|
T Consensus 317 ~RV~sG~l~~g~~v~~~~~~~~~rv~~~~~~~~ 349 (528)
T 3tr5_A 317 LRIASGQYQKGMKAYHVRLKKEIQINNALTFMA 349 (528)
T ss_dssp EEEEESCEETTEEEEETTTTEEEEESSCBCCBT
T ss_pred EEEecCeEcCCCEEEecCCCceEEEeeeEEEeC
Confidence 999999988776555432222334444444333
No 75
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.86 E-value=3.7e-21 Score=173.73 Aligned_cols=159 Identities=19% Similarity=0.171 Sum_probs=105.1
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCC--CeeEEEEeCCCCchhhhhhHhHHHHHHHHh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~--~~~l~liDtpG~~~~~~~~l~~~~~~~~~~ 191 (415)
+..+|+|+|.+|||||||+|+|++..+.. ...+..+.+.....+... ...+.+|||||. ..+..+ +..
T Consensus 28 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~-------~~~ 97 (201)
T 2hup_A 28 FLFKLVLVGDASVGKTCVVQRFKTGAFSE-RQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQ--ERFRTI-------TQS 97 (201)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCC-----------CEEEEEEEETTEEEEEEEECCTTC--GGGHHH-------HHH
T ss_pred cceEEEEECcCCCCHHHHHHHHhhCCCCC-CCCCCcceEEEEEEEEECCEEEEEEEEECCCc--HhHHHH-------HHH
Confidence 45699999999999999999999877642 111222222322333333 368999999995 333322 445
Q ss_pred hhcccceEEEEecCCCCC--chHHHHHHHHhcccCCCCCEEEEEeCCCCCChhH--HHHHHHHHhhcCCCccEEEcccCC
Q 014942 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE--IAKKLEWYEKFTDVDEVIPVSAKY 267 (415)
Q Consensus 192 ~~~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~--~~~~~~~~~~~~~~~~i~~vSA~~ 267 (415)
+++.+|++|+|+|++++. .....|+..+......+.|+++|+||+|+...+. ..+..+ +....+..+++++||++
T Consensus 98 ~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~-~~~~~~~~~~~~~SA~~ 176 (201)
T 2hup_A 98 YYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQS-LAEHYDILCAIETSAKD 176 (201)
T ss_dssp HHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHH-HHHHTTCSEEEECBTTT
T ss_pred HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHH-HHHHcCCCEEEEEeCCC
Confidence 578999999999998643 3334444444333236789999999999975322 222222 22333444899999999
Q ss_pred CCCHHHHHHHHHhhCC
Q 014942 268 GHGVEDIRDWILTKLP 283 (415)
Q Consensus 268 g~gv~eL~~~L~~~l~ 283 (415)
|.|+++++++|.+.+.
T Consensus 177 g~gi~~l~~~l~~~i~ 192 (201)
T 2hup_A 177 SSNVEEAFLRVATELI 192 (201)
T ss_dssp TBSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999998764
No 76
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.85 E-value=1.6e-21 Score=173.22 Aligned_cols=166 Identities=28% Similarity=0.341 Sum_probs=114.2
Q ss_pred CCCccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHh
Q 014942 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (415)
Q Consensus 112 ~~~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~ 191 (415)
.++..+|+++|++|||||||+|+|++..+. ++..+++|.+.....+...+..+.+|||||............+ ...
T Consensus 4 ~~~~~~i~lvG~~gvGKStL~~~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~---~~~ 79 (188)
T 2wjg_A 4 HMKSYEIALIGNPNVGKSTIFNALTGENVY-IGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEII---ARD 79 (188)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHTTCEE-EEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHH---HHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCcc-ccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHHHHH---HHH
Confidence 346679999999999999999999997754 5677888877777777777889999999996432111111111 112
Q ss_pred hh--cccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHHHHHHHhhcCCCccEEEcccCCCC
Q 014942 192 AG--INADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGH 269 (415)
Q Consensus 192 ~~--~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~ 269 (415)
++ ..+|++++|+|+++ ......++.. +.. .+.|+++|+||+|+.....+......+....+ .+++++||++|.
T Consensus 80 ~~~~~~~~~~i~v~d~~~-~~~~~~~~~~-~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 154 (188)
T 2wjg_A 80 YIINEKPDLVVNIVDATA-LERNLYLTLQ-LME--MGANLLLALNKMDLAKSLGIEIDVDKLEKILG-VKVVPLSAAKKM 154 (188)
T ss_dssp HHHHHCCSEEEEEEEGGG-HHHHHHHHHH-HHT--TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHT-SCEEECBGGGTB
T ss_pred HHhccCCCEEEEEecchh-HHHHHHHHHH-HHh--cCCCEEEEEEhhhccccccchHHHHHHHHHhC-CCeEEEEecCCC
Confidence 22 35899999999875 2333333333 333 57899999999998543221111122222222 379999999999
Q ss_pred CHHHHHHHHHhhCCCCC
Q 014942 270 GVEDIRDWILTKLPLGP 286 (415)
Q Consensus 270 gv~eL~~~L~~~l~~~~ 286 (415)
|+++++++|.+.+....
T Consensus 155 ~v~~l~~~i~~~~~~~~ 171 (188)
T 2wjg_A 155 GIEELKKAISIAVKDKK 171 (188)
T ss_dssp SHHHHHHHHHHHHTTC-
T ss_pred CHHHHHHHHHHHHHhcc
Confidence 99999999999887644
No 77
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.85 E-value=6.6e-21 Score=170.68 Aligned_cols=156 Identities=19% Similarity=0.223 Sum_probs=104.3
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCC-------------------------------
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE------------------------------- 162 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~------------------------------- 162 (415)
+..+|+|+|++|||||||+|+|++..+.. ...+.+..+.....+...+
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDTFHE-NTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN 84 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSCCCS-SCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCC-CcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence 45699999999999999999999887541 1122222222222222222
Q ss_pred --------eeEEEEeCCCCchhhhhhHhHHHHHHHHhhhcccceEEEEecCCCCC--chHHHHHHHHhcccCCCCCEEEE
Q 014942 163 --------YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLV 232 (415)
Q Consensus 163 --------~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~~~~piilV 232 (415)
..+.+|||||. ..+..+ +..++..+|++|+|+|++++. .....++..+... .+.|+++|
T Consensus 85 ~~~~~~~~~~~~i~Dt~G~--~~~~~~-------~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~--~~~piilv 153 (208)
T 3clv_A 85 NYNENLCNIKFDIWDTAGQ--ERYASI-------VPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKIS--SNYIIILV 153 (208)
T ss_dssp CCCTTTCEEEEEEEECTTG--GGCTTT-------HHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH--SCCEEEEE
T ss_pred cccCccceeEEEEEECCCc--HHHHHH-------HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhh--CCCcEEEE
Confidence 68999999994 343332 344578999999999998763 3334444444443 35899999
Q ss_pred EeCCCCCChh-HHHHHHHHHhhcCCCccEEEcccCCCCCHHHHHHHHHhhCC
Q 014942 233 LNKKDLIKPG-EIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLP 283 (415)
Q Consensus 233 ~NK~Dl~~~~-~~~~~~~~~~~~~~~~~i~~vSA~~g~gv~eL~~~L~~~l~ 283 (415)
+||+|+.... ...+....... .+ .+++++||++|.|+++++++|.+.+.
T Consensus 154 ~NK~D~~~~~~~~~~~~~~~~~-~~-~~~~~~Sa~~~~~i~~l~~~l~~~~~ 203 (208)
T 3clv_A 154 ANKIDKNKFQVDILEVQKYAQD-NN-LLFIQTSAKTGTNIKNIFYMLAEEIY 203 (208)
T ss_dssp EECTTCC-CCSCHHHHHHHHHH-TT-CEEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred EECCCcccccCCHHHHHHHHHH-cC-CcEEEEecCCCCCHHHHHHHHHHHHH
Confidence 9999943211 22333333333 23 48999999999999999999987653
No 78
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.85 E-value=3.2e-21 Score=175.29 Aligned_cols=159 Identities=19% Similarity=0.250 Sum_probs=101.8
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCC-CeeEEEEeCCCCchhhhhhHhHHHHHHHHhh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP-EYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~-~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~ 192 (415)
+..+|+++|++|||||||+++|++..+. ...+.++.......+... +..+.+|||||. ..+.. ..+..+
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~------~~~~~~ 75 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQYR--DTQTSITDSSAIYKVNNNRGNSLTLIDLPGH--ESLRF------QLLDRF 75 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCCC--CBCCCCSCEEEEEECSSTTCCEEEEEECCCC--HHHHH------HHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcc--cccCCcceeeEEEEecCCCccEEEEEECCCC--hhHHH------HHHHHH
Confidence 4569999999999999999999987754 333444433333222222 678999999995 33322 023445
Q ss_pred hcccceEEEEecCCCCCc---hHHHHHHHHhcc---cCCCCCEEEEEeCCCCCChhHHHHHHHHHh--------------
Q 014942 193 GINADCIVVLVDACKAPE---RIDEILEEGVGD---HKDKLPILLVLNKKDLIKPGEIAKKLEWYE-------------- 252 (415)
Q Consensus 193 ~~~aD~ii~VvD~~~~~~---~~~~~l~~~l~~---~~~~~piilV~NK~Dl~~~~~~~~~~~~~~-------------- 252 (415)
++.+|++|+|+|+++... ....++...+.. ...+.|+++|+||+|+..........+.+.
T Consensus 76 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 155 (214)
T 2fh5_B 76 KSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAP 155 (214)
T ss_dssp GGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC---
T ss_pred HhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhcc
Confidence 889999999999986221 222333333221 125789999999999975433222222111
Q ss_pred ---------h-cCC-------------CccEEEcccCCC------CCHHHHHHHHHhhC
Q 014942 253 ---------K-FTD-------------VDEVIPVSAKYG------HGVEDIRDWILTKL 282 (415)
Q Consensus 253 ---------~-~~~-------------~~~i~~vSA~~g------~gv~eL~~~L~~~l 282 (415)
. ... ..++++|||++| .||++++++|.+.+
T Consensus 156 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~~ 214 (214)
T 2fh5_B 156 STLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKIA 214 (214)
T ss_dssp ---------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHHC
T ss_pred ccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHhC
Confidence 0 111 457999999999 99999999998754
No 79
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.85 E-value=2.2e-21 Score=175.66 Aligned_cols=158 Identities=17% Similarity=0.133 Sum_probs=108.3
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCC--CeeEEEEeCCCCchhhhhhHhHHHHHHHHh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~--~~~l~liDtpG~~~~~~~~l~~~~~~~~~~ 191 (415)
+..+|+++|.+|||||||+++|++..+. ....+++.+.....+... ...+.+|||||. +.+..+ +..
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~-------~~~ 97 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGL--EDYDRL-------RPL 97 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHHSCCC--C-CCCCSEEEEEEEEECC-CEEEEEEEEECCS--GGGTTT-------GGG
T ss_pred CeEEEEEECcCCCCHHHHHHHHHhCCCC--CCcCCeecceeEEEEEECCEEEEEEEEECCCc--hhhHHH-------HHH
Confidence 4569999999999999999999977663 344555555544444443 456679999995 333322 344
Q ss_pred hhcccceEEEEecCCCCCc--hHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHH-------------HHHHHhhcCC
Q 014942 192 AGINADCIVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK-------------KLEWYEKFTD 256 (415)
Q Consensus 192 ~~~~aD~ii~VvD~~~~~~--~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~-------------~~~~~~~~~~ 256 (415)
++..+|++++|+|++++.. .....+...+.....+.|+++|+||+|+.......+ ....+....+
T Consensus 98 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 177 (204)
T 4gzl_A 98 SYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 177 (204)
T ss_dssp GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTT
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcC
Confidence 5889999999999987542 222233333333235899999999999976443211 1122333345
Q ss_pred CccEEEcccCCCCCHHHHHHHHHhhC
Q 014942 257 VDEVIPVSAKYGHGVEDIRDWILTKL 282 (415)
Q Consensus 257 ~~~i~~vSA~~g~gv~eL~~~L~~~l 282 (415)
..+++++||++|.|+++++++|.+.+
T Consensus 178 ~~~~~~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 178 AVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp CSEEEECCTTTCTTHHHHHHHHHHTT
T ss_pred CcEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 55799999999999999999998764
No 80
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.85 E-value=2.7e-21 Score=172.92 Aligned_cols=159 Identities=16% Similarity=0.139 Sum_probs=107.5
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCC--CeeEEEEeCCCCchhhhhhHhHHHHHHHHh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~--~~~l~liDtpG~~~~~~~~l~~~~~~~~~~ 191 (415)
+..+|+++|.+|||||||+++|++..+. ....+|+.......+... ...+.+|||||. ..+..+ +..
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~--~~~~~~-------~~~ 85 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDAFP--EEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQ--EDYDRL-------RPL 85 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCC--CSCCCSSCCCEEEEEESSSCEEEEEEECCCCS--SSSTTT-------GGG
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCcccceeEEEEEECCEEEEEEEEECCCC--cchhHH-------HHH
Confidence 4569999999999999999999987653 344445444433334443 368899999995 333322 345
Q ss_pred hhcccceEEEEecCCCCC--chHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHH-------------HHHHHHHhhcCC
Q 014942 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-------------AKKLEWYEKFTD 256 (415)
Q Consensus 192 ~~~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~-------------~~~~~~~~~~~~ 256 (415)
+++.+|++|+|+|++++. ......+...+.....+.|+++|+||+|+...... ......+....+
T Consensus 86 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 165 (194)
T 2atx_A 86 SYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIG 165 (194)
T ss_dssp GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHT
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcC
Confidence 588999999999998753 23332233333332258999999999999754211 111122222223
Q ss_pred CccEEEcccCCCCCHHHHHHHHHhhCC
Q 014942 257 VDEVIPVSAKYGHGVEDIRDWILTKLP 283 (415)
Q Consensus 257 ~~~i~~vSA~~g~gv~eL~~~L~~~l~ 283 (415)
..+++++||++|.|+++++++|.+.+.
T Consensus 166 ~~~~~~~Sa~~g~gi~~l~~~l~~~i~ 192 (194)
T 2atx_A 166 ACCYVECSALTQKGLKTVFDEAIIAIL 192 (194)
T ss_dssp CSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CcEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence 447999999999999999999987653
No 81
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.85 E-value=4.8e-21 Score=165.51 Aligned_cols=157 Identities=21% Similarity=0.204 Sum_probs=103.5
Q ss_pred ccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEE--eCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhh
Q 014942 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC--SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~--~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~ 192 (415)
..+|+++|.+|||||||+|+|++..+. ....+++.......+ ......+.+|||||. ..+..+ +..+
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~--~~~~~~-------~~~~ 71 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFV--DECDPTIEDSYRKQVVIDGETCLLDILDTAGQ--EEYSAM-------RDQY 71 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCCC--SSCCHH-------HHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCc--cccCCccceEEEEEEEECCEEEEEEEEECCCc--hhhhHH-------HHHh
Confidence 458999999999999999999987654 233333333322222 233457899999995 333332 2334
Q ss_pred hcccceEEEEecCCCCC--chHHHHHHHHhccc-CCCCCEEEEEeCCCCCChhHHHHHHHHHhhcCCCccEEEcccCCCC
Q 014942 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGH 269 (415)
Q Consensus 193 ~~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~-~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~ 269 (415)
+..+|++++|+|+++.. .....++..+.... ..+.|+++|+||+|+............+....+ .+++++||++|.
T Consensus 72 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 150 (166)
T 2ce2_X 72 MRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLARSYG-IPYIETSAKTRQ 150 (166)
T ss_dssp HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHT-CCEEEECTTTCT
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHHHcC-CeEEEecCCCCC
Confidence 67899999999998643 22233333322221 147999999999998763222222222222223 379999999999
Q ss_pred CHHHHHHHHHhhCC
Q 014942 270 GVEDIRDWILTKLP 283 (415)
Q Consensus 270 gv~eL~~~L~~~l~ 283 (415)
|+++++++|.+.+.
T Consensus 151 gi~~l~~~l~~~~~ 164 (166)
T 2ce2_X 151 GVEDAFYTLVREIR 164 (166)
T ss_dssp THHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999988654
No 82
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.85 E-value=2.9e-21 Score=170.03 Aligned_cols=155 Identities=15% Similarity=0.213 Sum_probs=101.7
Q ss_pred CCccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhh
Q 014942 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (415)
Q Consensus 113 ~~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~ 192 (415)
.+..+|+++|.+|||||||+++|++..+....+..+... .....+......+.+|||||... ..+
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~--------------~~~ 69 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQY-KKEMLVDGQTHLVLIREEAGAPD--------------AKF 69 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCCCSSCSSSEE-EEEEEETTEEEEEEEEECSSSCC--------------HHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCcCCCcceeE-EEEEEECCEEEEEEEEECCCCch--------------hHH
Confidence 356799999999999999999999887754222222221 11112233346789999999532 123
Q ss_pred hcccceEEEEecCCCCC--chHHHH---HHHHhcccCCCCCEEEEEeCCCCCC--hh--HHHHHHHHHhhcCCCccEEEc
Q 014942 193 GINADCIVVLVDACKAP--ERIDEI---LEEGVGDHKDKLPILLVLNKKDLIK--PG--EIAKKLEWYEKFTDVDEVIPV 263 (415)
Q Consensus 193 ~~~aD~ii~VvD~~~~~--~~~~~~---l~~~l~~~~~~~piilV~NK~Dl~~--~~--~~~~~~~~~~~~~~~~~i~~v 263 (415)
++.+|++|+|+|++++. .....| +.........+.|+++|+||+|+.. .. ............ ...+++++
T Consensus 70 ~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~-~~~~~~~~ 148 (178)
T 2iwr_A 70 SGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADM-KRCSYYET 148 (178)
T ss_dssp HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHH-SSEEEEEE
T ss_pred HHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhh-cCCeEEEE
Confidence 67899999999998754 233332 2222222225789999999999842 11 112222222222 23589999
Q ss_pred ccCCCCCHHHHHHHHHhhCC
Q 014942 264 SAKYGHGVEDIRDWILTKLP 283 (415)
Q Consensus 264 SA~~g~gv~eL~~~L~~~l~ 283 (415)
||++|.|+++++++|.+.+.
T Consensus 149 Sa~~~~~i~~lf~~l~~~~~ 168 (178)
T 2iwr_A 149 XATYGLNVDRVFQEVAQKVV 168 (178)
T ss_dssp BTTTTBTHHHHHHHHHHHHH
T ss_pred eccccCCHHHHHHHHHHHHH
Confidence 99999999999999987653
No 83
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.85 E-value=3.2e-21 Score=171.73 Aligned_cols=158 Identities=18% Similarity=0.210 Sum_probs=111.1
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~ 193 (415)
+..+|+++|++|||||||+|+|.+..+....+..+.+ ...+...+..+.+|||||.. .+..+ +..++
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~----~~~~~~~~~~~~~~Dt~G~~--~~~~~-------~~~~~ 87 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVN----LETLQYKNISFEVWDLGGQT--GVRPY-------WRCYF 87 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCCEEECSSTTCC----EEEEEETTEEEEEEEECCSS--SSCCC-------CSSSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCcCCCCceE----EEEEEECCEEEEEEECCCCH--hHHHH-------HHHHh
Confidence 5679999999999999999999987765433333322 22344467899999999953 33222 33457
Q ss_pred cccceEEEEecCCCCC--chHHHHHHHHhccc-CCCCCEEEEEeCCCCCChhHHHHHHHHHhh---cCCCccEEEcccCC
Q 014942 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVSAKY 267 (415)
Q Consensus 194 ~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~-~~~~piilV~NK~Dl~~~~~~~~~~~~~~~---~~~~~~i~~vSA~~ 267 (415)
+.+|++++|+|++++. .....++...+... ..+.|+++|+||+|+.......+....+.. .....+++++||++
T Consensus 88 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 167 (189)
T 2x77_A 88 SDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSSKT 167 (189)
T ss_dssp TTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTT
T ss_pred hcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCceEEEEccCCC
Confidence 8999999999998763 44455565555432 257899999999999765333333332221 11223799999999
Q ss_pred CCCHHHHHHHHHhhCCC
Q 014942 268 GHGVEDIRDWILTKLPL 284 (415)
Q Consensus 268 g~gv~eL~~~L~~~l~~ 284 (415)
|.|+++++++|.+.++.
T Consensus 168 ~~gi~~l~~~l~~~i~~ 184 (189)
T 2x77_A 168 GDGLVEGMDWLVERLRE 184 (189)
T ss_dssp CTTHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHh
Confidence 99999999999987753
No 84
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.85 E-value=2.7e-21 Score=175.28 Aligned_cols=159 Identities=19% Similarity=0.161 Sum_probs=106.5
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCC--eeEEEEeCCCCchhhhhhHhHHHHHHHHh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~l~liDtpG~~~~~~~~l~~~~~~~~~~ 191 (415)
+..+|+|+|.+|||||||+|+|++..+. ....+..+.+.....+...+ ..+.+|||||. ..+..+ +..
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~--~~~~~~-------~~~ 88 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVEDKFN-PSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQ--ERFRTI-------TTA 88 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHCCCC-CSSSCCCSCCEEEEEEEETTEEEEEEEECCTTG--GGGTCC-------CHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCC-cccCCcccceEEEEEEEECCEEEEEEEEeCCCc--HHHHHH-------HHH
Confidence 4569999999999999999999987764 23333333333333334344 68999999994 343333 334
Q ss_pred hhcccceEEEEecCCCCC--chHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHHHHHHHhhcCCCccEEEcccCCCC
Q 014942 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGH 269 (415)
Q Consensus 192 ~~~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~ 269 (415)
++..+|++|+|+|++++. .....++..+......+.|+++|+||+|+............+....+ .+++++||++|.
T Consensus 89 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 167 (213)
T 3cph_A 89 YYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELG-IPFIESSAKNDD 167 (213)
T ss_dssp HHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSSCCSCHHHHHHHHHHHT-CCEEECBTTTTB
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccccCHHHHHHHHHHcC-CEEEEEeCCCCC
Confidence 478999999999998653 23334444433332247899999999999532221122222222223 379999999999
Q ss_pred CHHHHHHHHHhhCC
Q 014942 270 GVEDIRDWILTKLP 283 (415)
Q Consensus 270 gv~eL~~~L~~~l~ 283 (415)
|+++++++|.+.+.
T Consensus 168 gi~~l~~~l~~~~~ 181 (213)
T 3cph_A 168 NVNEIFFTLAKLIQ 181 (213)
T ss_dssp SSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999988764
No 85
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.85 E-value=2.6e-21 Score=175.04 Aligned_cols=159 Identities=19% Similarity=0.179 Sum_probs=106.6
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCC--CeeEEEEeCCCCchhhhhhHhHHHHHHHHh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~--~~~l~liDtpG~~~~~~~~l~~~~~~~~~~ 191 (415)
+..+|+++|.+|||||||+|+|++..+.. ...+..+.+.....+..+ ...+.+|||||. ..+. ..+..
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~--~~~~-------~~~~~ 94 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQGLFPP-GQGATIGVDFMIKTVEINGEKVKLQIWDTAGQ--ERFR-------SITQS 94 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCT-TCCCCCSEEEEEEEEEETTEEEEEEEEEECCS--GGGH-------HHHGG
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCC-CCCCccceeEEEEEEEECCEEEEEEEEECCCc--HHHH-------HHHHH
Confidence 45699999999999999999999877642 222333333333333333 468999999994 3332 23556
Q ss_pred hhcccceEEEEecCCCCC--chHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHH-HHHHHHHhhcCCCccEEEcccCCC
Q 014942 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYG 268 (415)
Q Consensus 192 ~~~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g 268 (415)
+++.+|++|+|+|++++. .....|+..+......+.|+++|+||+|+.....+ ......+....+ .+++++||++|
T Consensus 95 ~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~g 173 (201)
T 2ew1_A 95 YYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQD-MYYLETSAKES 173 (201)
T ss_dssp GSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHT-CCEEECCTTTC
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcC-CEEEEEeCCCC
Confidence 789999999999998653 22334444333322357899999999999743222 111222222222 47999999999
Q ss_pred CCHHHHHHHHHhhCC
Q 014942 269 HGVEDIRDWILTKLP 283 (415)
Q Consensus 269 ~gv~eL~~~L~~~l~ 283 (415)
.|+++++++|.+.+.
T Consensus 174 ~gv~~l~~~l~~~i~ 188 (201)
T 2ew1_A 174 DNVEKLFLDLACRLI 188 (201)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999987764
No 86
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.85 E-value=3.2e-21 Score=171.87 Aligned_cols=163 Identities=21% Similarity=0.205 Sum_probs=103.5
Q ss_pred CCccEEEEEecCCCCHHHHHHHHhCCceeeee-CCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHh
Q 014942 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVT-NKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (415)
Q Consensus 113 ~~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~-~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~ 191 (415)
.+..+|+++|.+|||||||+|+|++..+.... ...+.+.......+......+.+|||||. ..+. ...+..
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~--~~~~------~~~~~~ 89 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ--ERFR------KSMVQH 89 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCS--HHHH------TTTHHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCc--hhhh------hhhhHH
Confidence 35569999999999999999999987764221 12222222222222333468999999994 3332 022345
Q ss_pred hhcccceEEEEecCCCCC--chHHHHHHHHhccc-CCCCCEEEEEeCCCCCChhHH-HHHHHHHhhcCCCccEEEcccCC
Q 014942 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKY 267 (415)
Q Consensus 192 ~~~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~-~~~~piilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~ 267 (415)
+++.+|++|+|+|+++.. .....|+..+.... ..+.|+++|+||+|+.....+ ......+....+ .+++++||++
T Consensus 90 ~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~ 168 (189)
T 1z06_A 90 YYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHS-MPLFETSAKN 168 (189)
T ss_dssp HHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTT-CCEEECCSSS
T ss_pred HhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcC-CEEEEEeCCc
Confidence 578999999999998643 23334444433322 267999999999999654222 122223333233 3799999999
Q ss_pred C---CCHHHHHHHHHhhCCC
Q 014942 268 G---HGVEDIRDWILTKLPL 284 (415)
Q Consensus 268 g---~gv~eL~~~L~~~l~~ 284 (415)
| .|+++++++|.+.++.
T Consensus 169 ~~~~~~i~~l~~~l~~~i~~ 188 (189)
T 1z06_A 169 PNDNDHVEAIFMTLAHKLKS 188 (189)
T ss_dssp GGGGSCHHHHHHHHC-----
T ss_pred CCcccCHHHHHHHHHHHHhh
Confidence 9 9999999999887753
No 87
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.85 E-value=2.8e-21 Score=168.40 Aligned_cols=158 Identities=21% Similarity=0.222 Sum_probs=101.3
Q ss_pred ccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEE--EEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhh
Q 014942 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~--~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~ 192 (415)
..+|+++|.+|||||||+|+|++..+.. ....+....... ........+.+|||||.. .+..+ +..+
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~--~~~~~-------~~~~ 71 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRE--SYIPTVEDTYRQVISCDKSICTLQITDTTGSH--QFPAM-------QRLS 71 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCS--SCCCCSCEEEEEEEEETTEEEEEEEEECCSCS--SCHHH-------HHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCC--CCCCCccccEEEEEEECCEEEEEEEEECCCch--hhHHH-------HHHh
Confidence 4589999999999999999999877532 111111111111 223334578999999953 33322 3345
Q ss_pred hcccceEEEEecCCCCC--chHHHHHHHHhcc--cCCCCCEEEEEeCCCCCChhHHH-HHHHHHhhcCCCccEEEcccCC
Q 014942 193 GINADCIVVLVDACKAP--ERIDEILEEGVGD--HKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKY 267 (415)
Q Consensus 193 ~~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~--~~~~~piilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~i~~vSA~~ 267 (415)
+..+|++++|+|++++. .....++..+... ...+.|+++|+||+|+.....+. .....+....+ .+++++||++
T Consensus 72 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~ 150 (172)
T 2erx_A 72 ISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWK-CAFMETSAKL 150 (172)
T ss_dssp HHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHT-CEEEECBTTT
T ss_pred cccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhC-CeEEEecCCC
Confidence 67899999999998643 2223333222221 11478999999999986543221 11112222222 4799999999
Q ss_pred CCCHHHHHHHHHhhCCC
Q 014942 268 GHGVEDIRDWILTKLPL 284 (415)
Q Consensus 268 g~gv~eL~~~L~~~l~~ 284 (415)
|.|+++++++|.+.+..
T Consensus 151 ~~gi~~l~~~l~~~~~~ 167 (172)
T 2erx_A 151 NHNVKELFQELLNLEKR 167 (172)
T ss_dssp TBSHHHHHHHHHHTCCS
T ss_pred CcCHHHHHHHHHHHHhh
Confidence 99999999999998764
No 88
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.85 E-value=2e-21 Score=173.62 Aligned_cols=159 Identities=18% Similarity=0.192 Sum_probs=105.0
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeC-CCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTN-KPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~-~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~ 192 (415)
+..+|+|+|.+|||||||+|+|++..+..... ..+.+.......+......+.+|||||. ..+..+ +..+
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~-------~~~~ 90 (191)
T 2a5j_A 20 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQ--ESFRSI-------TRSY 90 (191)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTG--GGTSCC-------CHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCc--hhhhhh-------HHHH
Confidence 45699999999999999999999887653222 1222222222223333468999999994 444433 2344
Q ss_pred hcccceEEEEecCCCCC--chHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHH--HHHHHHHhhcCCCccEEEcccCCC
Q 014942 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI--AKKLEWYEKFTDVDEVIPVSAKYG 268 (415)
Q Consensus 193 ~~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~i~~vSA~~g 268 (415)
+..+|++|+|+|++++. .....++..+......+.|+++|+||+|+.....+ ......... .+ .+++++||++|
T Consensus 91 ~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~-~~-~~~~~~Sa~~~ 168 (191)
T 2a5j_A 91 YRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFARE-HG-LIFMETSAKTA 168 (191)
T ss_dssp HTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH-HT-CEEEEECTTTC
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHH-cC-CEEEEEeCCCC
Confidence 78999999999998643 33334444443332357899999999999643221 122222222 22 37999999999
Q ss_pred CCHHHHHHHHHhhCC
Q 014942 269 HGVEDIRDWILTKLP 283 (415)
Q Consensus 269 ~gv~eL~~~L~~~l~ 283 (415)
.|+++++++|.+.+.
T Consensus 169 ~gi~~l~~~l~~~i~ 183 (191)
T 2a5j_A 169 CNVEEAFINTAKEIY 183 (191)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999987653
No 89
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.85 E-value=2.9e-21 Score=174.32 Aligned_cols=161 Identities=22% Similarity=0.208 Sum_probs=108.8
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEe--CCCeeEEEEeCCCCchhhhhhHhHHHHHHHHh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~--~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~ 191 (415)
+..+|+|+|.+|||||||+|+|++..+.. ...+..+.+.....+. .....+.+|||||. ..+..+ +..
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~--~~~~~~-------~~~ 76 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKKFSN-QYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ--ERFQSL-------GVA 76 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCS-SCCCCCSEEEEEEEEESSSCEEEEEEEEECSS--GGGSCS-------CCG
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCC-CCCCcccceEEEEEEEECCEEEEEEEEeCCCc--HHHHHh-------HHH
Confidence 45699999999999999999999887642 2223333333333333 33468999999995 333322 334
Q ss_pred hhcccceEEEEecCCCCC--chHHHHHHHHhccc----CCCCCEEEEEeCCCCCChhHHHHHHHHHhhcCCCccEEEccc
Q 014942 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDH----KDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSA 265 (415)
Q Consensus 192 ~~~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~----~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA 265 (415)
++..+|++|+|+|++++. .....++..+.... ..+.|+++|+||+|+............+.......+++++||
T Consensus 77 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 156 (207)
T 1vg8_A 77 FYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSA 156 (207)
T ss_dssp GGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCCEEECBT
T ss_pred HHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHHhcCCceEEEEeC
Confidence 578999999999998653 23334443333221 146899999999999743322222333333234458999999
Q ss_pred CCCCCHHHHHHHHHhhCCC
Q 014942 266 KYGHGVEDIRDWILTKLPL 284 (415)
Q Consensus 266 ~~g~gv~eL~~~L~~~l~~ 284 (415)
++|.|+++++++|.+.+..
T Consensus 157 ~~g~gi~~l~~~l~~~~~~ 175 (207)
T 1vg8_A 157 KEAINVEQAFQTIARNALK 175 (207)
T ss_dssp TTTBSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999987753
No 90
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.85 E-value=9.8e-22 Score=179.45 Aligned_cols=163 Identities=13% Similarity=0.030 Sum_probs=107.5
Q ss_pred CCccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEE--EEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHH
Q 014942 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (415)
Q Consensus 113 ~~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~--~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~ 190 (415)
.+..+|+|+|.+|||||||+++|++..+. .....|+...... .+......+.+|||||. ..+..+ +.
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~-------~~ 93 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKDCYP--ETYVPTVFENYTACLETEEQRVELSLWDTSGS--PYYDNV-------RP 93 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCC--SSCCCCSEEEEEEEEEC--CEEEEEEEEECCS--GGGTTT-------GG
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCC--CCcCCeeeeeEEEEEEECCEEEEEEEEECCCC--HhHHHH-------HH
Confidence 35669999999999999999999988764 3333343333332 23345578999999994 444333 34
Q ss_pred hhhcccceEEEEecCCCCCc--hHHHHHHHHhcccCCCCCEEEEEeCCCCCChh-------------HHHHHHHHHhhcC
Q 014942 191 SAGINADCIVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPG-------------EIAKKLEWYEKFT 255 (415)
Q Consensus 191 ~~~~~aD~ii~VvD~~~~~~--~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~-------------~~~~~~~~~~~~~ 255 (415)
.+++.+|++|+|+|++++.. .....+...+.....+.|+++|+||+|+.... ........+....
T Consensus 94 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 173 (214)
T 3q3j_B 94 LCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQL 173 (214)
T ss_dssp GGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHH
T ss_pred HHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHc
Confidence 55889999999999987542 21122333333323689999999999996421 1111122222333
Q ss_pred CCccEEEcccCCCCC-HHHHHHHHHhhCCCCC
Q 014942 256 DVDEVIPVSAKYGHG-VEDIRDWILTKLPLGP 286 (415)
Q Consensus 256 ~~~~i~~vSA~~g~g-v~eL~~~L~~~l~~~~ 286 (415)
+..++++|||++|.| |++++++|.+.+....
T Consensus 174 ~~~~~~e~SA~~g~g~v~~lf~~l~~~~~~~~ 205 (214)
T 3q3j_B 174 GAEIYLEGSAFTSEKSIHSIFRTASMLCLNKP 205 (214)
T ss_dssp TCSEEEECCTTTCHHHHHHHHHHHHHHHHC--
T ss_pred CCCEEEEeccCCCcccHHHHHHHHHHHHhccC
Confidence 444899999999998 9999999999876543
No 91
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.85 E-value=3.5e-21 Score=170.28 Aligned_cols=158 Identities=18% Similarity=0.170 Sum_probs=107.3
Q ss_pred CCccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeC--CCeeEEEEeCCCCchhhhhhHhHHHHHHHH
Q 014942 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG--PEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (415)
Q Consensus 113 ~~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~--~~~~l~liDtpG~~~~~~~~l~~~~~~~~~ 190 (415)
.+..+|+++|.+|||||||+|+|++..+. ...+.++.......+.. ....+.+|||||. ..+..+ +.
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~--~~~~~~-------~~ 84 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYDEFV--EDYEPTKADSYRKKVVLDGEEVQIDILDTAGQ--EDYAAI-------RD 84 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHSCCC--CSCCTTCCEEEEEEEEETTEEEEEEEEECCCT--TCCHHH-------HH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCC--CcCCCccceEEEEEEEECCEEEEEEEEECCCC--cccHHH-------HH
Confidence 45679999999999999999999987753 34444444433333333 3358999999995 333322 34
Q ss_pred hhhcccceEEEEecCCCCC--chHHHHHHHHhcccC-CCCCEEEEEeCCCCCChhH--HHHHHHHHhhcCCCccEEEccc
Q 014942 191 SAGINADCIVVLVDACKAP--ERIDEILEEGVGDHK-DKLPILLVLNKKDLIKPGE--IAKKLEWYEKFTDVDEVIPVSA 265 (415)
Q Consensus 191 ~~~~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~-~~~piilV~NK~Dl~~~~~--~~~~~~~~~~~~~~~~i~~vSA 265 (415)
.++..+|++++|+|+++.. .....++..+..... .+.|+++|+||+|+..... ..+....... .+ .+++++||
T Consensus 85 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-~~-~~~~~~Sa 162 (187)
T 2a9k_A 85 NYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQ-WN-VNYVETSA 162 (187)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHH-TT-CEEEECCT
T ss_pred HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHH-cC-CeEEEeCC
Confidence 4578899999999998643 233333333333221 4799999999999865322 2223333333 23 48999999
Q ss_pred CCCCCHHHHHHHHHhhCC
Q 014942 266 KYGHGVEDIRDWILTKLP 283 (415)
Q Consensus 266 ~~g~gv~eL~~~L~~~l~ 283 (415)
++|.|+++++++|.+.+.
T Consensus 163 ~~~~gi~~l~~~l~~~i~ 180 (187)
T 2a9k_A 163 KTRANVDKVFFDLMREIR 180 (187)
T ss_dssp TTCTTHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999988664
No 92
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.85 E-value=3.1e-21 Score=171.96 Aligned_cols=159 Identities=14% Similarity=0.113 Sum_probs=106.8
Q ss_pred ccEEEEEecCCCCHHHHHHHHhCCceeee-eCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhh
Q 014942 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIV-TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~~~~~~~~-~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~ 193 (415)
..+|+|+|.+|||||||+|+|++..+... ....+++..............+.+|||||. ..+..+ +..++
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~--~~~~~~-------~~~~~ 92 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQ--ERYRTI-------TTAYY 92 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSC--CSSCCS-------GGGGG
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCc--HHHhhh-------HHHhc
Confidence 45999999999999999999998876422 223333333333333444668999999995 333322 34557
Q ss_pred cccceEEEEecCCCCC--chHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHH-HHHHHHHhhcCCCccEEEcccCCCCC
Q 014942 194 INADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGHG 270 (415)
Q Consensus 194 ~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g~g 270 (415)
..+|++|+|+|++++. .....++..+......+.|+++|+||+|+.....+ ......+....+ .+++++||++|.|
T Consensus 93 ~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~g~g 171 (189)
T 2gf9_A 93 RGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLG-FEFFEASAKENIN 171 (189)
T ss_dssp TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHT-CEEEECBTTTTBS
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcC-CeEEEEECCCCCC
Confidence 8999999999997653 23334443333322257899999999999753221 111222222223 3899999999999
Q ss_pred HHHHHHHHHhhCC
Q 014942 271 VEDIRDWILTKLP 283 (415)
Q Consensus 271 v~eL~~~L~~~l~ 283 (415)
+++++++|.+.+.
T Consensus 172 i~~l~~~l~~~i~ 184 (189)
T 2gf9_A 172 VKQVFERLVDVIC 184 (189)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988664
No 93
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.85 E-value=1.1e-21 Score=175.29 Aligned_cols=160 Identities=13% Similarity=0.108 Sum_probs=109.6
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceee-eeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI-VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~-~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~ 192 (415)
...+|+|+|.+|||||||+|+|++..+.. .....+++..............+.+||||| +..+.. .+..+
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G--~~~~~~-------~~~~~ 92 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAG--QERYRT-------ITTAY 92 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHH--HHHCHH-------HHHHH
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCC--hHHHHH-------HHHHH
Confidence 34599999999999999999999866432 223334444444445566778999999999 443332 24455
Q ss_pred hcccceEEEEecCCCCC--chHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHH-HHHHHHHhhcCCCccEEEcccCCCC
Q 014942 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGH 269 (415)
Q Consensus 193 ~~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g~ 269 (415)
+..+|++|+|+|+++.. .....++..+......+.|+++|+||+|+.....+ ......+....+ .+++++||++|.
T Consensus 93 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 171 (191)
T 3dz8_A 93 YRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLG-FDFFEASAKENI 171 (191)
T ss_dssp HTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHT-CEEEECBTTTTB
T ss_pred HccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcC-CeEEEEECCCCC
Confidence 88999999999998643 33334443333322257899999999998643221 111222222223 389999999999
Q ss_pred CHHHHHHHHHhhCC
Q 014942 270 GVEDIRDWILTKLP 283 (415)
Q Consensus 270 gv~eL~~~L~~~l~ 283 (415)
|+++++++|.+.+.
T Consensus 172 gi~~l~~~l~~~i~ 185 (191)
T 3dz8_A 172 SVRQAFERLVDAIC 185 (191)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999988653
No 94
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.85 E-value=1.3e-21 Score=185.46 Aligned_cols=160 Identities=23% Similarity=0.271 Sum_probs=111.7
Q ss_pred ccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhh-
Q 014942 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG- 193 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~- 193 (415)
..+|+++|+||||||||+|+|++.... ++..|++|.....+.+.. +..+.+|||||............+ +..++
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~-v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v---~~~~~~ 77 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQR-VGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKV---ARDYLL 77 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCC-CCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHH---HHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCc-ccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHH---HHHHHh
Confidence 358999999999999999999997643 678899998877777766 779999999996432211122222 22223
Q ss_pred -cccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHHHHHHHhhcCCCccEEEcccCCCCCHH
Q 014942 194 -INADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVE 272 (415)
Q Consensus 194 -~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gv~ 272 (415)
..+|++++|+|+++. .....+. ..+.. .+.|+++|+||+|+.....+......+....+ .+++++||++|.|++
T Consensus 78 ~~~~d~vi~V~D~t~~-e~~~~~~-~~l~~--~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg-~~vi~~SA~~g~gi~ 152 (272)
T 3b1v_A 78 SQRADSILNVVDATNL-ERNLYLT-TQLIE--TGIPVTIALNMIDVLDGQGKKINVDKLSYHLG-VPVVATSALKQTGVD 152 (272)
T ss_dssp TTCCSEEEEEEEGGGH-HHHHHHH-HHHHH--TCSCEEEEEECHHHHHHTTCCCCHHHHHHHHT-SCEEECBTTTTBSHH
T ss_pred cCCCCEEEEEecCCch-HhHHHHH-HHHHh--cCCCEEEEEEChhhCCcCCcHHHHHHHHHHcC-CCEEEEEccCCCCHH
Confidence 369999999999763 2222232 23333 57999999999998543221111122222223 489999999999999
Q ss_pred HHHHHHHhhCCC
Q 014942 273 DIRDWILTKLPL 284 (415)
Q Consensus 273 eL~~~L~~~l~~ 284 (415)
+|+++|.+.+..
T Consensus 153 el~~~i~~~~~~ 164 (272)
T 3b1v_A 153 QVVKKAAHTTTS 164 (272)
T ss_dssp HHHHHHHHSCTT
T ss_pred HHHHHHHHHHhh
Confidence 999999998754
No 95
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.85 E-value=2.4e-21 Score=174.74 Aligned_cols=158 Identities=18% Similarity=0.157 Sum_probs=101.5
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCC--CeeEEEEeCCCCchhhhhhHhHHHHHHHHh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~--~~~l~liDtpG~~~~~~~~l~~~~~~~~~~ 191 (415)
+..+|+|+|.+|||||||+|+|++..+... ..+..+.+.....+... ...+.+|||||. ..+..+ +..
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~--~~~~~~-------~~~ 93 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIENKFKQD-SNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQ--ERFRSV-------TRS 93 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC-------------CCEEEEEEEETTEEEEEEEECCTTH--HHHSCC-------CHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCcc-CCCcccceeEEEEEEECCeeeEEEEEcCCCc--HhHHHH-------HHH
Confidence 456999999999999999999998876532 22222222222223333 368999999993 333333 334
Q ss_pred hhcccceEEEEecCCCCC--chHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHH--HHHHHHHhhcCCCccEEEcccCC
Q 014942 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI--AKKLEWYEKFTDVDEVIPVSAKY 267 (415)
Q Consensus 192 ~~~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~i~~vSA~~ 267 (415)
+++.+|++|+|+|++++. .....++..+......+.|+++|+||+|+.....+ .+....... .+ .+++++||++
T Consensus 94 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~-~~-~~~~~~SA~~ 171 (200)
T 2o52_A 94 YYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQE-NE-LMFLETSALT 171 (200)
T ss_dssp HHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHH-TT-CEEEEECTTT
T ss_pred HhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHH-cC-CEEEEEeCCC
Confidence 578999999999998754 33334444433322357899999999999643222 222222222 22 4899999999
Q ss_pred CCCHHHHHHHHHhhCC
Q 014942 268 GHGVEDIRDWILTKLP 283 (415)
Q Consensus 268 g~gv~eL~~~L~~~l~ 283 (415)
|.|+++++++|.+.+.
T Consensus 172 g~gi~~l~~~l~~~i~ 187 (200)
T 2o52_A 172 GENVEEAFLKCARTIL 187 (200)
T ss_dssp CTTHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999988764
No 96
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.85 E-value=3.7e-21 Score=173.30 Aligned_cols=160 Identities=13% Similarity=0.114 Sum_probs=107.3
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeee-eCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIV-TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~-~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~ 192 (415)
...+|+|+|.+|||||||+|+|++..+... ....+.+..............+.+|||||. ..+. ..+..+
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~--~~~~-------~~~~~~ 77 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGL--ERYR-------TITTAY 77 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCS--GGGH-------HHHHTT
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCc--hhhc-------chHHHh
Confidence 346899999999999999999999876422 222333333333333444568999999995 3332 235566
Q ss_pred hcccceEEEEecCCCCC--chHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHH-HHHHHHHhhcCCCccEEEcccCCCC
Q 014942 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGH 269 (415)
Q Consensus 193 ~~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g~ 269 (415)
+..+|++|+|+|++++. .....++..+......+.|+++|+||+|+.....+ ......+....+ .+++++||++|.
T Consensus 78 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 156 (203)
T 1zbd_A 78 YRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLG-FEFFEASAKDNI 156 (203)
T ss_dssp GGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHT-CEEEECBTTTTB
T ss_pred hcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCC-CeEEEEECCCCC
Confidence 88999999999998753 22333443333322257899999999999753221 111222222223 389999999999
Q ss_pred CHHHHHHHHHhhCC
Q 014942 270 GVEDIRDWILTKLP 283 (415)
Q Consensus 270 gv~eL~~~L~~~l~ 283 (415)
|+++++++|.+.+.
T Consensus 157 gi~~l~~~l~~~i~ 170 (203)
T 1zbd_A 157 NVKQTFERLVDVIC 170 (203)
T ss_dssp SSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999987653
No 97
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.85 E-value=2.1e-21 Score=174.68 Aligned_cols=160 Identities=18% Similarity=0.162 Sum_probs=103.0
Q ss_pred CCccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCC--eeEEEEeCCCCchhhhhhHhHHHHHHHH
Q 014942 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (415)
Q Consensus 113 ~~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~l~liDtpG~~~~~~~~l~~~~~~~~~ 190 (415)
.+..+|+++|.+|||||||+++|++..+. ...++|+.+.....+...+ ..+.+|||||. ..+..+ +.
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~-------~~ 86 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTTNGYP--TEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQ--DEFDKL-------RP 86 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC----------CCSSEEEEEEEEETTEEEEEEEEECCCS--TTCSSS-------GG
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCcccceeEEEEEECCEEEEEEEEECCCC--HHHHHH-------hH
Confidence 35669999999999999999999988753 4455555554444444444 56789999995 333332 33
Q ss_pred hhhcccceEEEEecCCCCC--chHHHHHHHHhcccCCCCCEEEEEeCCCCCChhH-------------HHHHHHHHhhcC
Q 014942 191 SAGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE-------------IAKKLEWYEKFT 255 (415)
Q Consensus 191 ~~~~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~-------------~~~~~~~~~~~~ 255 (415)
.++..+|++|+|+|++++. ......+...+.....+.|+++|+||+|+..... .......+....
T Consensus 87 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 166 (201)
T 2q3h_A 87 LCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEI 166 (201)
T ss_dssp GGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHH
T ss_pred hhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhc
Confidence 4578999999999998754 2222123222332225899999999999964211 011122222223
Q ss_pred CCccEEEcccCCCCCHHHHHHHHHhhCC
Q 014942 256 DVDEVIPVSAKYGHGVEDIRDWILTKLP 283 (415)
Q Consensus 256 ~~~~i~~vSA~~g~gv~eL~~~L~~~l~ 283 (415)
+..+++++||++|.|+++++++|.+.+.
T Consensus 167 ~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 194 (201)
T 2q3h_A 167 KAASYIECSALTQKNLKEVFDAAIVAGI 194 (201)
T ss_dssp TCSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CCcEEEEEecCCCCCHHHHHHHHHHHHh
Confidence 4458999999999999999999988664
No 98
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.85 E-value=2.9e-21 Score=182.92 Aligned_cols=166 Identities=33% Similarity=0.358 Sum_probs=116.9
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~ 193 (415)
+..+|+++|++|||||||+|+|++..+ .+...+++|.+.....+...+..+.+|||||+................ -..
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~-~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~-~~~ 79 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQ-HVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNF-ILD 79 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCE-EEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHH-HHT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCc-ccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHh-hhc
Confidence 456899999999999999999999887 578889999888888888888899999999975322222222221111 113
Q ss_pred cccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHHHHHHHhhcCCCccEEEcccCCCCCHHH
Q 014942 194 INADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVED 273 (415)
Q Consensus 194 ~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gv~e 273 (415)
..+|++++|+|+++.. ....++...... ...|+++|+||+|+............+....+ .+++++||++|.|+++
T Consensus 80 ~~~d~vi~v~D~~~~~-~~~~~~~~~~~~--~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg-~~~~~~Sa~~g~gi~~ 155 (271)
T 3k53_A 80 GNADVIVDIVDSTCLM-RNLFLTLELFEM--EVKNIILVLNKFDLLKKKGAKIDIKKMRKELG-VPVIPTNAKKGEGVEE 155 (271)
T ss_dssp TCCSEEEEEEEGGGHH-HHHHHHHHHHHT--TCCSEEEEEECHHHHHHHTCCCCHHHHHHHHS-SCEEECBGGGTBTHHH
T ss_pred cCCcEEEEEecCCcch-hhHHHHHHHHhc--CCCCEEEEEEChhcCcccccHHHHHHHHHHcC-CcEEEEEeCCCCCHHH
Confidence 6899999999998742 222333333332 23999999999997643221111222222223 4899999999999999
Q ss_pred HHHHHHhhCCCC
Q 014942 274 IRDWILTKLPLG 285 (415)
Q Consensus 274 L~~~L~~~l~~~ 285 (415)
++++|.+.+...
T Consensus 156 l~~~i~~~~~~~ 167 (271)
T 3k53_A 156 LKRMIALMAEGK 167 (271)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHhcc
Confidence 999999877543
No 99
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.85 E-value=1.7e-22 Score=198.69 Aligned_cols=214 Identities=19% Similarity=0.222 Sum_probs=138.4
Q ss_pred CCccEEEEEecCCCCHHHHHHHHhCCcee-----eeeCCCC----------------------ceEEe------------
Q 014942 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLS-----IVTNKPQ----------------------TTRHR------------ 153 (415)
Q Consensus 113 ~~~~~V~ivG~~~vGKSSLln~l~~~~~~-----~~~~~~~----------------------tt~~~------------ 153 (415)
...++|+|+|.+|||||||+|+|+|.++. .++..|+ +|++.
T Consensus 29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i 108 (353)
T 2x2e_A 29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 108 (353)
T ss_dssp CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence 35679999999999999999999998875 3444454 22210
Q ss_pred ------------EEEEEeCCCeeEEEEeCCCCchhh----hhhHhHHHHHHHHhhhcc-cceEEEEecCCCCCchHHH-H
Q 014942 154 ------------ILGICSGPEYQMILYDTPGIIEKK----IHMLDSMMMKNVRSAGIN-ADCIVVLVDACKAPERIDE-I 215 (415)
Q Consensus 154 ------------~~~~~~~~~~~l~liDtpG~~~~~----~~~l~~~~~~~~~~~~~~-aD~ii~VvD~~~~~~~~~~-~ 215 (415)
...+......++.||||||+.... .......+...+..++.. ++++++|+|++......+. .
T Consensus 109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~ 188 (353)
T 2x2e_A 109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 188 (353)
T ss_dssp HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHH
T ss_pred cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHH
Confidence 011112224689999999985321 111222233344455544 4567777887766544443 2
Q ss_pred HHHHhcccCCCCCEEEEEeCCCCCChhH-HHHHHHH--HhhcCCCccEEEcccCCCCCHHHHHHHHHhhCCCCCCCCCCC
Q 014942 216 LEEGVGDHKDKLPILLVLNKKDLIKPGE-IAKKLEW--YEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKF 292 (415)
Q Consensus 216 l~~~l~~~~~~~piilV~NK~Dl~~~~~-~~~~~~~--~~~~~~~~~i~~vSA~~g~gv~eL~~~L~~~l~~~~~~~~~~ 292 (415)
+.+.+.. .+.|+++|+||+|+..... ....... +....++.+++++||++|.|+++|++++.+ ++++.++.
T Consensus 189 i~~~~~~--~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~---e~~~f~~~- 262 (353)
T 2x2e_A 189 VAKEVDP--QGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA---ERKFFLSH- 262 (353)
T ss_dssp HHHHHCT--TCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH---HHHHHHHC-
T ss_pred HHHHhCc--CCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH---HHHHhccC-
Confidence 4555544 6789999999999976432 2222110 000123457889999999999999999987 33344443
Q ss_pred CccccCCchh---HHHHHHHHHHHHhhcCCCCCc----------eEEEEEEEEE
Q 014942 293 QDIVSEHPER---FFVGEIIREKIFMQYRNEVPY----------ACQVNVVSYK 333 (415)
Q Consensus 293 ~~~~t~~~~~---~~i~eiireki~~~~~~eipy----------s~~v~i~~~~ 333 (415)
+..++.+.+ +.+++++|++++.++++++|| ++.+.+..+.
T Consensus 263 -~~~~~~~~r~~~~~l~~~l~e~l~~~i~~~lP~l~~~i~~~~~~~~~~l~~~~ 315 (353)
T 2x2e_A 263 -PSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQLLSIEKEVEEYK 315 (353)
T ss_dssp -TTTGGGGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CcccccHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 444555555 789999999999999999999 6666655543
No 100
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.85 E-value=3.8e-21 Score=167.57 Aligned_cols=157 Identities=19% Similarity=0.187 Sum_probs=98.4
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEE--EeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhh
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~--~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~ 193 (415)
.+|+++|.+|||||||+|+|++.........+ ++.+..... +......+.+|||||.. .+... ....++
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~g~~--~~~~~------~~~~~~ 73 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGLQGDHAHEME-NSEDTYERRIMVDKEEVTLIVYDIWEQG--DAGGW------LQDHCL 73 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC-------------CEEEEEEEETTEEEEEEEECCCCC----------------CHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHhccCcccccCC-CcCCeeeEEEEECCeEEEEEEEECCCcc--ccchh------hhhhhh
Confidence 48999999999999999999987654333222 223333332 33335688899999953 22210 122336
Q ss_pred cccceEEEEecCCCCC--chHHHHHHHHhcccC-CCCCEEEEEeCCCCCChhHH-HHHHHHHhhcCCCccEEEcccCCCC
Q 014942 194 INADCIVVLVDACKAP--ERIDEILEEGVGDHK-DKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGH 269 (415)
Q Consensus 194 ~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~-~~~piilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g~ 269 (415)
..+|++++|+|++++. .....++..+..... .+.|+++|+||+|+.....+ ......+....+ .+++++||++|.
T Consensus 74 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 152 (169)
T 3q85_A 74 QTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLS-CKHIETSAALHH 152 (169)
T ss_dssp HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTT-CEEEECBTTTTB
T ss_pred ccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcC-CcEEEecCccCC
Confidence 6799999999998743 344455555544321 47999999999999743222 122222333333 389999999999
Q ss_pred CHHHHHHHHHhhC
Q 014942 270 GVEDIRDWILTKL 282 (415)
Q Consensus 270 gv~eL~~~L~~~l 282 (415)
|+++++++|.+.+
T Consensus 153 ~v~~l~~~l~~~i 165 (169)
T 3q85_A 153 NTRELFEGAVRQI 165 (169)
T ss_dssp SHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998765
No 101
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.85 E-value=7.5e-22 Score=174.19 Aligned_cols=159 Identities=19% Similarity=0.178 Sum_probs=99.2
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEE--EeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~--~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~ 191 (415)
+..+|+++|++|||||||+++|++..+. ....+|+....... .......+.+|||||. ..+..+ +..
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~-------~~~ 75 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNTFP--TDYVPTVFDNFSANVVVNGATVNLGLWDTAGQ--EDYNRL-------RPL 75 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSCCC------------CBCCCC-------CEEECCCC---CTTTTT-------GGG
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCeeeeeEEEEEEECCEEEEEEEEECCCC--hhhhhh-------HHh
Confidence 5569999999999999999999987653 33334433322211 2233456779999994 333322 345
Q ss_pred hhcccceEEEEecCCCCC--chHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHH-----------HHHHHHHhhcCCCc
Q 014942 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-----------AKKLEWYEKFTDVD 258 (415)
Q Consensus 192 ~~~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~-----------~~~~~~~~~~~~~~ 258 (415)
++..+|++++|+|++++. ......+...+.....+.|+++|+||+|+...... ......+....+..
T Consensus 76 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 155 (182)
T 3bwd_D 76 SYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAP 155 (182)
T ss_dssp GGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCS
T ss_pred hccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCC
Confidence 578999999999998653 22222233333332257999999999998754332 11222233323445
Q ss_pred cEEEcccCCCCCHHHHHHHHHhhCC
Q 014942 259 EVIPVSAKYGHGVEDIRDWILTKLP 283 (415)
Q Consensus 259 ~i~~vSA~~g~gv~eL~~~L~~~l~ 283 (415)
+++++||++|.|+++++++|.+.+.
T Consensus 156 ~~~~~Sa~~~~gi~~l~~~l~~~i~ 180 (182)
T 3bwd_D 156 AYIECSSKSQENVKGVFDAAIRVVL 180 (182)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHh
Confidence 8999999999999999999998764
No 102
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.85 E-value=1e-21 Score=173.74 Aligned_cols=158 Identities=13% Similarity=0.074 Sum_probs=84.7
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCC--eeEEEEeCCCCchhhhhhHhHHHHHHHHh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~l~liDtpG~~~~~~~~l~~~~~~~~~~ 191 (415)
...+|+++|.+|||||||+|+|++..+. ....+.++.+.....+..++ ..+.+|||||. ..+. ..+..
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~--~~~~-------~~~~~ 76 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSEDAFN-STFISTIGIDFKIRTIELDGKRIKLQIWDTAGQ--ERFR-------TITTA 76 (183)
T ss_dssp EEEEEEEECCCCC-----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC------------------CCT
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCcccceeEEEEEEECCEEEEEEEEcCCCC--hhhh-------hhHHH
Confidence 3468999999999999999999987653 22233334443333333333 78999999994 3322 22445
Q ss_pred hhcccceEEEEecCCCCC--chHHHHHHHHhcccCCCCCEEEEEeCCCCCChhH--HHHHHHHHhhcCCCccEEEcccCC
Q 014942 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE--IAKKLEWYEKFTDVDEVIPVSAKY 267 (415)
Q Consensus 192 ~~~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~--~~~~~~~~~~~~~~~~i~~vSA~~ 267 (415)
+++.+|++|+|+|++++. .....|+..+......+.|+++|+||+|+..... .......... .+ .+++++||++
T Consensus 77 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~-~~-~~~~~~Sa~~ 154 (183)
T 2fu5_C 77 YYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALD-YG-IKFMETSAKA 154 (183)
T ss_dssp TTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHH-HT-CEEEECCC--
T ss_pred HHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHH-cC-CeEEEEeCCC
Confidence 688999999999998753 2333444443332235789999999999975322 1222222222 23 4799999999
Q ss_pred CCCHHHHHHHHHhhCC
Q 014942 268 GHGVEDIRDWILTKLP 283 (415)
Q Consensus 268 g~gv~eL~~~L~~~l~ 283 (415)
|.|+++++++|.+.+.
T Consensus 155 ~~~i~~l~~~l~~~i~ 170 (183)
T 2fu5_C 155 NINVENAFFTLARDIK 170 (183)
T ss_dssp -CCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999987664
No 103
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.85 E-value=5.4e-21 Score=168.33 Aligned_cols=159 Identities=21% Similarity=0.206 Sum_probs=100.6
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEe---CCCeeEEEEeCCCCchhhhhhHhHHHHHHHH
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS---GPEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~---~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~ 190 (415)
+..+|+++|.+|||||||+|+|++..+.. ...+..+.+.....+. .....+.+|||||. ..+. ..+.
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~--~~~~-------~~~~ 76 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDKYSQ-QYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ--ERFQ-------SLGV 76 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCT-TC---CCCSCEEEEECCSSSCCEEEEEECCC-------------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCcCCc-ccCCccceEEEEEEEEEcCCcEEEEEEEECCCC--hHhh-------hhhH
Confidence 45699999999999999999999877542 1122222222223333 23468999999994 3322 2345
Q ss_pred hhhcccceEEEEecCCCCC--chHHHHHHHHhccc----CCCCCEEEEEeCCCCCChhH--HHHHHHHHhhcCCCccEEE
Q 014942 191 SAGINADCIVVLVDACKAP--ERIDEILEEGVGDH----KDKLPILLVLNKKDLIKPGE--IAKKLEWYEKFTDVDEVIP 262 (415)
Q Consensus 191 ~~~~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~----~~~~piilV~NK~Dl~~~~~--~~~~~~~~~~~~~~~~i~~ 262 (415)
.++..+|++|+|+|++++. .....++..+.... ..+.|+++|+||+|+..... .......+.......++++
T Consensus 77 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~ 156 (182)
T 1ky3_A 77 AFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFL 156 (182)
T ss_dssp CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEE
T ss_pred HHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEE
Confidence 6688999999999998754 23333433333221 15789999999999964321 1122223333234458999
Q ss_pred cccCCCCCHHHHHHHHHhhC
Q 014942 263 VSAKYGHGVEDIRDWILTKL 282 (415)
Q Consensus 263 vSA~~g~gv~eL~~~L~~~l 282 (415)
+||++|.|+++++++|.+.+
T Consensus 157 ~Sa~~~~gi~~l~~~l~~~~ 176 (182)
T 1ky3_A 157 TSAKNAINVDTAFEEIARSA 176 (182)
T ss_dssp EBTTTTBSHHHHHHHHHHHH
T ss_pred EecCCCCCHHHHHHHHHHHH
Confidence 99999999999999998765
No 104
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.85 E-value=1.5e-21 Score=171.64 Aligned_cols=161 Identities=19% Similarity=0.148 Sum_probs=104.9
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCC---CeeEEEEeCCCCchhhhhhHhHHHHHHHH
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP---EYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~---~~~l~liDtpG~~~~~~~~l~~~~~~~~~ 190 (415)
+..+|+++|.+|||||||+|+|++..+.. ...+..+.+.....+... ...+.+|||||. ..+..+ +.
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~--~~~~~~-------~~ 74 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQETFGK-QYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQ--TIGGKM-------LD 74 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGGGTTH-HHHHTTTSSEEEEEEEETTTEEEEEEEEECTTC--CTTCTT-------HH
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhCcCCC-CCCCceeEEEEEEEEEeCCCCEEEEEEEECCCC--ccccch-------hh
Confidence 55799999999999999999999877531 111222222222333333 378999999995 333333 33
Q ss_pred hhhcccceEEEEecCCCCC--chHHHHHHHHhccc--CCCCC-EEEEEeCCCCCChhHH--HHHHHHHhhcCCCccEEEc
Q 014942 191 SAGINADCIVVLVDACKAP--ERIDEILEEGVGDH--KDKLP-ILLVLNKKDLIKPGEI--AKKLEWYEKFTDVDEVIPV 263 (415)
Q Consensus 191 ~~~~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~--~~~~p-iilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~i~~v 263 (415)
.++..+|++++|+|++++. .....++..+.... ..+.| +++|+||+|+.....+ ......... .+ .+++++
T Consensus 75 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~-~~-~~~~~~ 152 (178)
T 2hxs_A 75 KYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQE-NG-FSSHFV 152 (178)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHH-HT-CEEEEE
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHH-cC-CcEEEE
Confidence 4478999999999998753 23333333322211 02456 8999999999653221 122222222 22 479999
Q ss_pred ccCCCCCHHHHHHHHHhhCCCCC
Q 014942 264 SAKYGHGVEDIRDWILTKLPLGP 286 (415)
Q Consensus 264 SA~~g~gv~eL~~~L~~~l~~~~ 286 (415)
||++|.|+++++++|.+.+...+
T Consensus 153 Sa~~~~gi~~l~~~l~~~~~~~~ 175 (178)
T 2hxs_A 153 SAKTGDSVFLCFQKVAAEILGIK 175 (178)
T ss_dssp CTTTCTTHHHHHHHHHHHHTTCC
T ss_pred eCCCCCCHHHHHHHHHHHHHhhh
Confidence 99999999999999999887644
No 105
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.85 E-value=1.2e-21 Score=176.59 Aligned_cols=160 Identities=22% Similarity=0.258 Sum_probs=106.9
Q ss_pred CCccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEE--eCCCeeEEEEeCCCCchhhhhhHhHHHHHHHH
Q 014942 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC--SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (415)
Q Consensus 113 ~~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~--~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~ 190 (415)
.+..+|+|+|.+|||||||+|+|++..+. .....++........ ......+.+|||||. ..+..+ +.
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~--~~~~~~-------~~ 90 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEGEFS--EGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQ--DEYSIL-------PY 90 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCC--SCCCCCSEEEEEEEEC----CEEEEEEEECCC--CTTCCC-------CG
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhCCCC--CCCCCccceEEEEEEEECCEEEEEEEEECCCc--cchHHH-------HH
Confidence 45679999999999999999999988765 333344443333333 345678899999995 333322 34
Q ss_pred hhhcccceEEEEecCCCCC--chHHHHHHHHhccc-CCCCCEEEEEeCCCCCChhHHH-HHHHHHhhcCCCccEEEcccC
Q 014942 191 SAGINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAK 266 (415)
Q Consensus 191 ~~~~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~-~~~~piilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~i~~vSA~ 266 (415)
.++..+|++++|+|+++.. .....++..+.... ..+.|+++|+||+|+.....+. .....+....+ .+++++||+
T Consensus 91 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~ 169 (201)
T 3oes_A 91 SFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWG-ATFMESSAR 169 (201)
T ss_dssp GGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHT-CEEEECCTT
T ss_pred HHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhC-CeEEEEeCC
Confidence 5578999999999998643 33334444433321 2478999999999997543221 11222222223 389999999
Q ss_pred CCCCHHHHHHHHHhhCCC
Q 014942 267 YGHGVEDIRDWILTKLPL 284 (415)
Q Consensus 267 ~g~gv~eL~~~L~~~l~~ 284 (415)
+|.|+++++++|.+.+..
T Consensus 170 ~~~~v~~l~~~l~~~i~~ 187 (201)
T 3oes_A 170 ENQLTQGIFTKVIQEIAR 187 (201)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 999999999999987754
No 106
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.85 E-value=8.6e-21 Score=168.96 Aligned_cols=155 Identities=15% Similarity=0.171 Sum_probs=103.8
Q ss_pred CCCCccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEe--CCCeeEEEEeCCCCchhhhhhHhHHHHHH
Q 014942 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKN 188 (415)
Q Consensus 111 ~~~~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~--~~~~~l~liDtpG~~~~~~~~l~~~~~~~ 188 (415)
+..+..+|+|+|.+|||||||+|+|++..+... ...|. ......+. .....+.+|||||.. .+.
T Consensus 16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~--~~~t~-~~~~~~~~~~~~~~~l~i~Dt~G~~--~~~--------- 81 (184)
T 3ihw_A 16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQE--ESPEG-GRFKKEIVVDGQSYLLLIRDEGGPP--ELQ--------- 81 (184)
T ss_dssp CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCC--CCTTC-EEEEEEEEETTEEEEEEEEECSSSC--CHH---------
T ss_pred CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCC--cCCCc-ceEEEEEEECCEEEEEEEEECCCCh--hhh---------
Confidence 344667999999999999999999998876421 22222 22222333 334678889999952 222
Q ss_pred HHhhhcccceEEEEecCCCCC--chHHHHHHHHhccc-CCCCCEEEEEeCCCCCC--hhHH-HHHHHHHhhcCCCccEEE
Q 014942 189 VRSAGINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIK--PGEI-AKKLEWYEKFTDVDEVIP 262 (415)
Q Consensus 189 ~~~~~~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~-~~~~piilV~NK~Dl~~--~~~~-~~~~~~~~~~~~~~~i~~ 262 (415)
+++.+|++++|+|++++. .....|+..+.... ..+.|+++|+||+|+.. ...+ ......+....+..++++
T Consensus 82 ---~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e 158 (184)
T 3ihw_A 82 ---FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYE 158 (184)
T ss_dssp ---HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEE
T ss_pred ---eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEE
Confidence 367899999999998754 33344444443321 14789999999999842 1111 112222333334458999
Q ss_pred cccCCCCCHHHHHHHHHhhC
Q 014942 263 VSAKYGHGVEDIRDWILTKL 282 (415)
Q Consensus 263 vSA~~g~gv~eL~~~L~~~l 282 (415)
+||++|.|+++++++|.+.+
T Consensus 159 ~Sa~~~~gv~~lf~~l~~~i 178 (184)
T 3ihw_A 159 TCATYGLNVERVFQDVAQKV 178 (184)
T ss_dssp EBTTTTBTHHHHHHHHHHHH
T ss_pred ecCCCCCCHHHHHHHHHHHH
Confidence 99999999999999998765
No 107
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.85 E-value=4.8e-21 Score=172.39 Aligned_cols=160 Identities=19% Similarity=0.182 Sum_probs=100.9
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceee-eeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI-VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~-~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~ 192 (415)
+..+|+|+|.+|||||||+|+|++..+.. .....+.+.......+......+.+|||||. ..+.. .+..+
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~-------~~~~~ 97 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQ--ERFRS-------IAKSY 97 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTC--TTCHH-------HHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCC--cchhh-------hHHHH
Confidence 45699999999999999999999877532 2223333333233333444567999999995 33332 24455
Q ss_pred hcccceEEEEecCCCCC--chHHHHHHHHhcccCCCCCEEEEEeCCCCCCh------hHH-HHHHHHHhhcCCCccEEEc
Q 014942 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKP------GEI-AKKLEWYEKFTDVDEVIPV 263 (415)
Q Consensus 193 ~~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~------~~~-~~~~~~~~~~~~~~~i~~v 263 (415)
+..+|++|+|+|++++. .....|+..+......+.|+++|+||+|+... ..+ ......+....+ .+++++
T Consensus 98 ~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~ 176 (199)
T 2p5s_A 98 FRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYG-ALFCET 176 (199)
T ss_dssp HHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHT-CEEEEC
T ss_pred HhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcC-CeEEEe
Confidence 78899999999998653 23333333332222257899999999998521 111 111122222222 379999
Q ss_pred ccCCCCCHHHHHHHHHhhCC
Q 014942 264 SAKYGHGVEDIRDWILTKLP 283 (415)
Q Consensus 264 SA~~g~gv~eL~~~L~~~l~ 283 (415)
||++|.|+++++++|.+.+.
T Consensus 177 SA~~g~gv~el~~~l~~~i~ 196 (199)
T 2p5s_A 177 SAKDGSNIVEAVLHLAREVK 196 (199)
T ss_dssp CTTTCTTHHHHHHHHHHHHT
T ss_pred eCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999998765
No 108
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.85 E-value=3.1e-21 Score=175.13 Aligned_cols=160 Identities=20% Similarity=0.147 Sum_probs=108.7
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEE--eCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC--SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~--~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~ 191 (415)
+..+|+++|.+|||||||+++|++..+. ....+|+.......+ ......+.+|||||. +.+..+ +..
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~-------~~~ 76 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKFP--TDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQ--EDYSRL-------RPL 76 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCC--SSCCCSSCCCEEEEEECSSCEEEEEEECCCCC--CCCCC---------CG
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCC--ccCCCccceeEEEEEEECCEEEEEEEEECCCc--HHHHHH-------HHh
Confidence 5569999999999999999999987753 333444443333333 334468999999995 333332 344
Q ss_pred hhcccceEEEEecCCCCC--chHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHH---------HHHHHHHhhcCCCccE
Q 014942 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI---------AKKLEWYEKFTDVDEV 260 (415)
Q Consensus 192 ~~~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~---------~~~~~~~~~~~~~~~i 260 (415)
++..+|++|+|+|++++. ......+...+.....+.|+++|+||+|+.....+ ......+....+..++
T Consensus 77 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 156 (212)
T 2j0v_A 77 SYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAY 156 (212)
T ss_dssp GGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEE
T ss_pred hccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceE
Confidence 588999999999998653 22222233333332258999999999998754331 2222223333344589
Q ss_pred EEcccCCCCCHHHHHHHHHhhCCC
Q 014942 261 IPVSAKYGHGVEDIRDWILTKLPL 284 (415)
Q Consensus 261 ~~vSA~~g~gv~eL~~~L~~~l~~ 284 (415)
+++||++|.|+++++++|.+.+..
T Consensus 157 ~~~Sa~~g~gi~~l~~~l~~~~~~ 180 (212)
T 2j0v_A 157 IECSSKTQQNVKAVFDTAIKVVLQ 180 (212)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHC
T ss_pred EEccCCCCCCHHHHHHHHHHHHhh
Confidence 999999999999999999998765
No 109
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.84 E-value=1.8e-21 Score=169.70 Aligned_cols=158 Identities=18% Similarity=0.191 Sum_probs=103.3
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEE--eCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC--SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~--~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~ 191 (415)
+..+|+++|.+|||||||+|+|++..+.. ...+..+.+.....+ ......+.+|||||. ..+. .....
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~-------~~~~~ 74 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCENKFND-KHITTLGASFLTKKLNIGGKRVNLAIWDTAGQ--ERFH-------ALGPI 74 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCCS-SCCCCCSCEEEEEEEESSSCEEEEEEEECCCC----------------CC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCc-CCCCccceEEEEEEEEECCEEEEEEEEECCCc--Hhhh-------hhHHH
Confidence 45689999999999999999999876542 222222222222233 334468899999994 3322 22445
Q ss_pred hhcccceEEEEecCCCCC--chHHHHHHHHhcccCCCCCEEEEEeCCCCCChhH--HHHHHHHHhhcCCCccEEEcccCC
Q 014942 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE--IAKKLEWYEKFTDVDEVIPVSAKY 267 (415)
Q Consensus 192 ~~~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~--~~~~~~~~~~~~~~~~i~~vSA~~ 267 (415)
++..+|++++|+|++++. .....++..+......+.|+++|+||+|+..... .......... .+ .+++++||++
T Consensus 75 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-~~-~~~~~~Sa~~ 152 (170)
T 1z08_A 75 YYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAES-VG-AKHYHTSAKQ 152 (170)
T ss_dssp SSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHH-TT-CEEEEEBTTT
T ss_pred HhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHH-cC-CeEEEecCCC
Confidence 678999999999998754 2333343333222225789999999999975322 1222222222 23 4899999999
Q ss_pred CCCHHHHHHHHHhhCC
Q 014942 268 GHGVEDIRDWILTKLP 283 (415)
Q Consensus 268 g~gv~eL~~~L~~~l~ 283 (415)
|.|+++++++|.+.+.
T Consensus 153 ~~gi~~l~~~l~~~~~ 168 (170)
T 1z08_A 153 NKGIEELFLDLCKRMI 168 (170)
T ss_dssp TBSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999988764
No 110
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.84 E-value=5.2e-21 Score=172.33 Aligned_cols=159 Identities=18% Similarity=0.184 Sum_probs=108.7
Q ss_pred CCCccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCC--CeeEEEEeCCCCchhhhhhHhHHHHHHH
Q 014942 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNV 189 (415)
Q Consensus 112 ~~~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~--~~~l~liDtpG~~~~~~~~l~~~~~~~~ 189 (415)
..+..+|+|+|.+|||||||+|+|++..+. ...++++.......+... ...+.+|||||. ..+..+ +
T Consensus 11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~--~~~~~~-------~ 79 (206)
T 2bov_A 11 SLALHKVIMVGSGGVGKSALTLQFMYDEFV--EDYEPTKADSYRKKVVLDGEEVQIDILDTAGQ--EDYAAI-------R 79 (206)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCC--TTCCTTCCEEEEEEEEETTEEEEEEEEECCCT--TCCHHH-------H
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCccceEEEEEEEECCEEEEEEEEcCCCh--hhhHHH-------H
Confidence 345679999999999999999999987753 344455444433333333 358999999995 333322 3
Q ss_pred HhhhcccceEEEEecCCCCC--chHHHHHHHHhccc-CCCCCEEEEEeCCCCCChhH--HHHHHHHHhhcCCCccEEEcc
Q 014942 190 RSAGINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGE--IAKKLEWYEKFTDVDEVIPVS 264 (415)
Q Consensus 190 ~~~~~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~-~~~~piilV~NK~Dl~~~~~--~~~~~~~~~~~~~~~~i~~vS 264 (415)
..++..+|++++|+|+++.. .....++..+.... ..+.|+++|+||+|+..... ........... + .+++++|
T Consensus 80 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~-~~~~~~S 157 (206)
T 2bov_A 80 DNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQW-N-VNYVETS 157 (206)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHH-T-CEEEEEC
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHh-C-CeEEEEe
Confidence 44577899999999998643 23334444433321 14799999999999975322 22223333222 2 3799999
Q ss_pred cCCCCCHHHHHHHHHhhCC
Q 014942 265 AKYGHGVEDIRDWILTKLP 283 (415)
Q Consensus 265 A~~g~gv~eL~~~L~~~l~ 283 (415)
|++|.|+++++++|.+.+.
T Consensus 158 a~~g~gi~~l~~~l~~~i~ 176 (206)
T 2bov_A 158 AKTRANVDKVFFDLMREIR 176 (206)
T ss_dssp TTTCTTHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999998764
No 111
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.84 E-value=1e-20 Score=168.46 Aligned_cols=160 Identities=21% Similarity=0.144 Sum_probs=101.8
Q ss_pred CCCccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeC--CCeeEEEEeCCCCchhhhhhHhHHHHHHH
Q 014942 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG--PEYQMILYDTPGIIEKKIHMLDSMMMKNV 189 (415)
Q Consensus 112 ~~~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~--~~~~l~liDtpG~~~~~~~~l~~~~~~~~ 189 (415)
.++..+|+++|.+|||||||+|+|++..+. ....+++.......+.. ....+.+|||||. ..+. ..+
T Consensus 18 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~--~~~~-------~~~ 86 (190)
T 3con_A 18 GMTEYKLVVVGAGGVGKSALTIQLIQNHFV--DEYDPTIEDSYRKQVVIDGETCLLDILDTAGQ--EEYS-------AMR 86 (190)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSSCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------------
T ss_pred ccceeEEEEECcCCCCHHHHHHHHHcCCCc--cccCCccceEEEEEEEECCEEEEEEEEECCCh--HHHH-------HHH
Confidence 345679999999999999999999987653 33344444433333333 3356999999994 3322 224
Q ss_pred HhhhcccceEEEEecCCCCC--chHHHHHHHHhccc-CCCCCEEEEEeCCCCCChhHHHHHHHHHhhcCCCccEEEcccC
Q 014942 190 RSAGINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAK 266 (415)
Q Consensus 190 ~~~~~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~-~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~ 266 (415)
..++..+|++++|+|+++.. .....++..+.... ..+.|+++|+||+|+............+....+ .+++++||+
T Consensus 87 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~Sa~ 165 (190)
T 3con_A 87 DQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKSYG-IPFIETSAK 165 (190)
T ss_dssp ---CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHT-CCEEECCTT
T ss_pred HHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHHHHcC-CeEEEEeCC
Confidence 45688999999999998654 22333333222211 147899999999998753211112222222223 379999999
Q ss_pred CCCCHHHHHHHHHhhCC
Q 014942 267 YGHGVEDIRDWILTKLP 283 (415)
Q Consensus 267 ~g~gv~eL~~~L~~~l~ 283 (415)
+|.|+++++++|.+.+.
T Consensus 166 ~~~gi~~l~~~l~~~~~ 182 (190)
T 3con_A 166 TRQGVEDAFYTLVREIR 182 (190)
T ss_dssp TCTTHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999999988764
No 112
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.84 E-value=5e-21 Score=166.32 Aligned_cols=156 Identities=18% Similarity=0.210 Sum_probs=103.9
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEE--EeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~--~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~ 191 (415)
+..+|+++|++|||||||+|+|++..+.. ...+..+.+..... +......+.+|||||. ..+..+ +..
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~--~~~~~~-------~~~ 73 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTK-DYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQ--EEFDAI-------TKA 73 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCC-CSSCCCSSSEEEEEEEETTEEEEEEEECCTTG--GGTTCC-------CHH
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCCCC-CCCCceEEEEEEEEEEECCEEEEEEEEcCCCc--HhHHHH-------HHH
Confidence 45689999999999999999999876542 12222222222222 2333568999999994 343333 233
Q ss_pred hhcccceEEEEecCCCCC--chHHHHHHHHhcccCCCCCEEEEEeCCCCCChhH--HHHHHHHHhhcCCCccEEEcccCC
Q 014942 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE--IAKKLEWYEKFTDVDEVIPVSAKY 267 (415)
Q Consensus 192 ~~~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~--~~~~~~~~~~~~~~~~i~~vSA~~ 267 (415)
++..+|++++|+|++++. .....++..+.... .+.|+++|+||+|+..... .......... .+ .+++++||++
T Consensus 74 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-~~-~~~~~~Sa~~ 150 (168)
T 1z2a_A 74 YYRGAQACVLVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDDSCIKNEEAEGLAKR-LK-LRFYRTSVKE 150 (168)
T ss_dssp HHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEEECGGGGGGCSSCHHHHHHHHHH-HT-CEEEECBTTT
T ss_pred HhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccCcccccCHHHHHHHHHH-cC-CeEEEEecCC
Confidence 478999999999998753 33333443333322 5789999999999875322 1222222222 23 3899999999
Q ss_pred CCCHHHHHHHHHhhC
Q 014942 268 GHGVEDIRDWILTKL 282 (415)
Q Consensus 268 g~gv~eL~~~L~~~l 282 (415)
|.|+++++++|.+.+
T Consensus 151 ~~~i~~l~~~l~~~~ 165 (168)
T 1z2a_A 151 DLNVSEVFKYLAEKH 165 (168)
T ss_dssp TBSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999998765
No 113
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.84 E-value=1e-20 Score=168.26 Aligned_cols=158 Identities=17% Similarity=0.143 Sum_probs=104.7
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeE-EEEEeCC-----------CeeEEEEeCCCCchhhhhhH
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRI-LGICSGP-----------EYQMILYDTPGIIEKKIHML 181 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~-~~~~~~~-----------~~~l~liDtpG~~~~~~~~l 181 (415)
+..+|+|+|.+|||||||+|+|++..+.. ...+....+.. ...+... ...+.+|||||. ..+.
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~--~~~~-- 84 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTDGKFNS-KFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGL--ERFR-- 84 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCC-SCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCS--GGGH--
T ss_pred eeEEEEEECCCCCCHHHHHHHHhcCCCCc-CcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCc--HHHH--
Confidence 45699999999999999999999876532 11222222222 2222222 458999999995 3332
Q ss_pred hHHHHHHHHhhhcccceEEEEecCCCCC--chHHHHHHHHhcccC-CCCCEEEEEeCCCCCChhHH--HHHHHHHhhcCC
Q 014942 182 DSMMMKNVRSAGINADCIVVLVDACKAP--ERIDEILEEGVGDHK-DKLPILLVLNKKDLIKPGEI--AKKLEWYEKFTD 256 (415)
Q Consensus 182 ~~~~~~~~~~~~~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~-~~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~ 256 (415)
..+..++..+|++|+|+|++++. .....++..+..... .+.|+++|+||+|+.....+ ......... .+
T Consensus 85 -----~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-~~ 158 (195)
T 3bc1_A 85 -----SLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEK-YG 158 (195)
T ss_dssp -----HHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHH-HT
T ss_pred -----HHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHH-cC
Confidence 23556689999999999998654 223334433333221 57899999999999753221 222222222 22
Q ss_pred CccEEEcccCCCCCHHHHHHHHHhhCC
Q 014942 257 VDEVIPVSAKYGHGVEDIRDWILTKLP 283 (415)
Q Consensus 257 ~~~i~~vSA~~g~gv~eL~~~L~~~l~ 283 (415)
.+++++||++|.|+++++++|.+.+.
T Consensus 159 -~~~~~~Sa~~~~~v~~l~~~l~~~~~ 184 (195)
T 3bc1_A 159 -IPYFETSAANGTNISHAIEMLLDLIM 184 (195)
T ss_dssp -CCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred -CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 37999999999999999999988663
No 114
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.84 E-value=1.1e-20 Score=169.30 Aligned_cols=160 Identities=18% Similarity=0.174 Sum_probs=103.3
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEE--EEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRIL--GICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~--~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~ 191 (415)
+..+|+++|.+|||||||+|+|++..+.. ....+...... .........+.+|||||. ..+..+ +..
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~--~~~~~~-------~~~ 75 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGTFRD--TYIPTIEDTYRQVISCDKSVCTLQITDTTGS--HQFPAM-------QRL 75 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSCCCC--TTSCCCCEEEEEEEEETTEEEEEEEEECCGG--GSCHHH-------HHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCCCCC--cccCccccceeEEEEECCEEEEEEEEeCCCh--HHhHHH-------HHH
Confidence 45699999999999999999999876542 11112111111 122334558999999994 333322 334
Q ss_pred hhcccceEEEEecCCCCC--chHHHHHHHHhc--ccCCCCCEEEEEeCCCCCChhHHHHHHHHHhhcCCCccEEEcccCC
Q 014942 192 AGINADCIVVLVDACKAP--ERIDEILEEGVG--DHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKY 267 (415)
Q Consensus 192 ~~~~aD~ii~VvD~~~~~--~~~~~~l~~~l~--~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~ 267 (415)
++..+|++++|+|++++. .....++..+.. ....+.|+++|+||+|+............+....+ .+++++||++
T Consensus 76 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~ 154 (199)
T 2gf0_A 76 SISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQEWK-CAFMETSAKM 154 (199)
T ss_dssp HHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHHHHHT-CEEEECBTTT
T ss_pred hhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHHHHhC-CeEEEEecCC
Confidence 467899999999998643 222233222211 11146899999999999753221112222222222 3799999999
Q ss_pred CCCHHHHHHHHHhhCCCC
Q 014942 268 GHGVEDIRDWILTKLPLG 285 (415)
Q Consensus 268 g~gv~eL~~~L~~~l~~~ 285 (415)
|.|+++++++|.+.+...
T Consensus 155 ~~gi~~l~~~l~~~~~~~ 172 (199)
T 2gf0_A 155 NYNVKELFQELLTLETRR 172 (199)
T ss_dssp TBSHHHHHHHHHHHCSSS
T ss_pred CCCHHHHHHHHHHHHhhh
Confidence 999999999999988653
No 115
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.84 E-value=1.5e-20 Score=168.87 Aligned_cols=166 Identities=12% Similarity=0.035 Sum_probs=103.4
Q ss_pred CCCCCccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEE-eCCCeeEEEEeCCCCchhhhhhHhHHHHHH
Q 014942 110 HPNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC-SGPEYQMILYDTPGIIEKKIHMLDSMMMKN 188 (415)
Q Consensus 110 ~~~~~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~-~~~~~~l~liDtpG~~~~~~~~l~~~~~~~ 188 (415)
.+..+..+|+++|.+|||||||++++.+......+.....+.......+ ......+.+|||||. +.+..+.. .
T Consensus 15 ~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~~~----~ 88 (196)
T 3llu_A 15 YFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQ--MDFFDPTF----D 88 (196)
T ss_dssp -----CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSS--CCTTCTTC----C
T ss_pred cccCcceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCC--HHHHhhhh----h
Confidence 3445667999999999999999999988643321211222222222222 256679999999994 34333210 0
Q ss_pred HHhhhcccceEEEEecCCCCCchHHHHHHHHhcc---cCCCCCEEEEEeCCCCCChhH-------HH-HHHHHHhhc---
Q 014942 189 VRSAGINADCIVVLVDACKAPERIDEILEEGVGD---HKDKLPILLVLNKKDLIKPGE-------IA-KKLEWYEKF--- 254 (415)
Q Consensus 189 ~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~---~~~~~piilV~NK~Dl~~~~~-------~~-~~~~~~~~~--- 254 (415)
...+++.+|++|+|+|++++.......+...+.. ...+.|+++|+||+|+..... +. .....+...
T Consensus 89 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~ 168 (196)
T 3llu_A 89 YEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLE 168 (196)
T ss_dssp HHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCT
T ss_pred cccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhh
Confidence 0344788999999999998643333333232222 126899999999999976432 11 111222221
Q ss_pred CCCccEEEcccCCCCCHHHHHHHHHhhC
Q 014942 255 TDVDEVIPVSAKYGHGVEDIRDWILTKL 282 (415)
Q Consensus 255 ~~~~~i~~vSA~~g~gv~eL~~~L~~~l 282 (415)
....++++|||++ .||+++|+.|++.+
T Consensus 169 ~~~~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 169 KLHLSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp TSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred cCCcceEEEEech-hhHHHHHHHHHHHh
Confidence 2235899999999 99999999998764
No 116
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.84 E-value=5.9e-21 Score=171.70 Aligned_cols=161 Identities=19% Similarity=0.222 Sum_probs=107.0
Q ss_pred CCccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEE--EeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHH
Q 014942 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (415)
Q Consensus 113 ~~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~--~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~ 190 (415)
....+|+++|.+|||||||+|+|++..... ...+.++.+..... +......+.+|||||.. .+.. .+ ..
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~--~~~~---~~---~~ 91 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFGGLQGDS-AHEPENPEDTYERRIMVDKEEVTLVVYDIWEQG--DAGG---WL---RD 91 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTCCEECCG-GGTTTSCTTEEEEEEEETTEEEEEEEECCCCCS--GGGH---HH---HH
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhccCCc-cCCCCcccceEEEEEEECCEEEEEEEEecCCCc--cchh---hh---HH
Confidence 345699999999999999999998755432 23344443333333 33334678899999953 2221 11 22
Q ss_pred hhhcccceEEEEecCCCCC--chHHHHHHHHhcccC-CCCCEEEEEeCCCCCChhHH--HHHHHHHhhcCCCccEEEccc
Q 014942 191 SAGINADCIVVLVDACKAP--ERIDEILEEGVGDHK-DKLPILLVLNKKDLIKPGEI--AKKLEWYEKFTDVDEVIPVSA 265 (415)
Q Consensus 191 ~~~~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~-~~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~i~~vSA 265 (415)
.+++.+|++|+|+|+++.. .....|+..+..... .+.|+++|+||+|+.....+ .+... +....+ .+++++||
T Consensus 92 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~-~a~~~~-~~~~e~Sa 169 (195)
T 3cbq_A 92 HCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRH-LAGTLS-CKHIETSA 169 (195)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHH-HHHHTT-CEEEEEBT
T ss_pred HhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHH-HHHHhC-CEEEEEcC
Confidence 3467899999999998643 344455554433211 47999999999999754322 22222 222223 48999999
Q ss_pred CCCCCHHHHHHHHHhhCCC
Q 014942 266 KYGHGVEDIRDWILTKLPL 284 (415)
Q Consensus 266 ~~g~gv~eL~~~L~~~l~~ 284 (415)
++|.|+++++++|.+.+..
T Consensus 170 ~~~~~v~~lf~~l~~~i~~ 188 (195)
T 3cbq_A 170 ALHHNTRELFEGAVRQIRL 188 (195)
T ss_dssp TTTBSHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999987753
No 117
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.84 E-value=1.8e-21 Score=205.84 Aligned_cols=212 Identities=18% Similarity=0.204 Sum_probs=147.9
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEE-----------------------------------------
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRH----------------------------------------- 152 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~----------------------------------------- 152 (415)
..|+|+|+|.+|+|||||+|+|+|..+......+ +|+.
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~-~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~ 128 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGI-VTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 128 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSC-SCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccCcCCcc-ccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence 4569999999999999999999998763222211 1111
Q ss_pred ----------eEE-EEEeCCCeeEEEEeCCCCchhh----hhhHhHHHHHHHHhhh-cccceEEEEecCCCCCchHHH-H
Q 014942 153 ----------RIL-GICSGPEYQMILYDTPGIIEKK----IHMLDSMMMKNVRSAG-INADCIVVLVDACKAPERIDE-I 215 (415)
Q Consensus 153 ----------~~~-~~~~~~~~~l~liDtpG~~~~~----~~~l~~~~~~~~~~~~-~~aD~ii~VvD~~~~~~~~~~-~ 215 (415)
.+. .+......+++|+||||+.... ...+...+...+..++ ..+|++++|+|++.+....+. .
T Consensus 129 ~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ 208 (772)
T 3zvr_A 129 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 208 (772)
T ss_dssp HCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHH
T ss_pred cCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHH
Confidence 111 1122234478999999986521 1111122222333333 689999999999987755554 4
Q ss_pred HHHHhcccCCCCCEEEEEeCCCCCChhHH-HHHHH--HHhhcCCCccEEEcccCCCCCHHHHHHHHHh---hCCCCCCCC
Q 014942 216 LEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLE--WYEKFTDVDEVIPVSAKYGHGVEDIRDWILT---KLPLGPAYY 289 (415)
Q Consensus 216 l~~~l~~~~~~~piilV~NK~Dl~~~~~~-~~~~~--~~~~~~~~~~i~~vSA~~g~gv~eL~~~L~~---~l~~~~~~~ 289 (415)
+...+.. .+.|+++|+||+|+...... ..... .+....++.+++++||++|.|+++|++.|.+ .++++|++
T Consensus 209 ll~~L~~--~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e~~ffpe~P~y- 285 (772)
T 3zvr_A 209 IAKEVDP--QGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAERKFFLSHPSY- 285 (772)
T ss_dssp HHHHHCT--TCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHHHHHHHHCTTT-
T ss_pred HHHHHHh--cCCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHHHHHhccCCcch-
Confidence 6666665 68999999999999865432 11111 0001124567899999999999999999987 47777764
Q ss_pred CCCCccccCCchhHHHHHHHHHHHHhhcCCCCCc----------eEEEEEEEEE
Q 014942 290 PKFQDIVSEHPERFFVGEIIREKIFMQYRNEVPY----------ACQVNVVSYK 333 (415)
Q Consensus 290 ~~~~~~~t~~~~~~~i~eiireki~~~~~~eipy----------s~~v~i~~~~ 333 (415)
+.+++++.++.+++++||+++.++++++|| ++.+.+..+.
T Consensus 286 ----d~ltDr~g~~~LaEiLrEkL~~hi~~ELP~l~~~I~~~l~s~~vele~~~ 335 (772)
T 3zvr_A 286 ----RHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQLLSIEKEVDEYK 335 (772)
T ss_dssp ----GGGGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----hhhhhcccHHHHHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHHHHHhC
Confidence 567889999999999999999999999999 8877777664
No 118
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.84 E-value=8.2e-21 Score=171.23 Aligned_cols=159 Identities=20% Similarity=0.201 Sum_probs=105.0
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEE-EEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG-ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~-~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~ 192 (415)
...+|+++|.+|||||||+|+|.+..+.. ...+.++...... .+......+.+|||||. ..+..+ +..+
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~-------~~~~ 93 (201)
T 2gco_A 24 IRKKLVIVGDGACGKTCLLIVFSKDQFPE-VYVPTVFENYIADIEVDGKQVELALWDTAGQ--EDYDRL-------RPLS 93 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCS-SCCCSSCCCCEEEEEETTEEEEEEEECCCCS--GGGTTT-------GGGG
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCc-ccCCcccceEEEEEEECCEEEEEEEEECCCc--hhHHHH-------HHHh
Confidence 45689999999999999999999877642 1222222222111 22233458999999995 333332 3345
Q ss_pred hcccceEEEEecCCCCC--chHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHH-------------HHHHHhhcCCC
Q 014942 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK-------------KLEWYEKFTDV 257 (415)
Q Consensus 193 ~~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~-------------~~~~~~~~~~~ 257 (415)
+..+|++++|+|++++. ......+...+.....+.|+++|+||+|+........ ....+....+.
T Consensus 94 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 173 (201)
T 2gco_A 94 YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISA 173 (201)
T ss_dssp CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTC
T ss_pred cCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCC
Confidence 78999999999998643 2332333344433235899999999999976432211 11222222344
Q ss_pred ccEEEcccCCCCCHHHHHHHHHhhC
Q 014942 258 DEVIPVSAKYGHGVEDIRDWILTKL 282 (415)
Q Consensus 258 ~~i~~vSA~~g~gv~eL~~~L~~~l 282 (415)
.+++++||++|.|+++++++|.+.+
T Consensus 174 ~~~~~~SA~~g~gi~~l~~~i~~~~ 198 (201)
T 2gco_A 174 FGYLECSAKTKEGVREVFEMATRAG 198 (201)
T ss_dssp SEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 4799999999999999999998754
No 119
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.84 E-value=1.1e-21 Score=196.29 Aligned_cols=164 Identities=28% Similarity=0.400 Sum_probs=115.6
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCe-eEEEEeCCCCchhhhhhHhHHHHHHHHhh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEY-QMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~-~l~liDtpG~~~~~~~~l~~~~~~~~~~~ 192 (415)
...+|+|+|++|+|||||+|+|++..+..++..+++|.+.....+...+. .+.+|||||+. .+..+.......+..+
T Consensus 33 ~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~--d~~~l~~~~~~~~~~~ 110 (423)
T 3qq5_A 33 FRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLD--DVGELGRLRVEKARRV 110 (423)
T ss_dssp CCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTT--CCCTTCCCCHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCC--cccchhHHHHHHHHHH
Confidence 45699999999999999999999999877788889888877666665554 89999999964 3333333333446667
Q ss_pred hcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHHHHHHHhhcCCCccEEEcccCCCCCHH
Q 014942 193 GINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVE 272 (415)
Q Consensus 193 ~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gv~ 272 (415)
+..+|++|+|+|+ +.......+...+.. .+.|+++|+||+|+...... +..+.+....+ .+++++||++|.|++
T Consensus 111 l~~aD~vllVvD~--~~~~~~~~~l~~l~~--~~~piIvV~NK~Dl~~~~~~-~~~~~l~~~~g-~~v~~vSAktg~gI~ 184 (423)
T 3qq5_A 111 FYRADCGILVTDS--APTPYEDDVVNLFKE--MEIPFVVVVNKIDVLGEKAE-ELKGLYESRYE-AKVLLVSALQKKGFD 184 (423)
T ss_dssp HTSCSEEEEECSS--SCCHHHHHHHHHHHH--TTCCEEEECCCCTTTTCCCT-HHHHHSSCCTT-CCCCCCSSCCTTSTT
T ss_pred HhcCCEEEEEEeC--CChHHHHHHHHHHHh--cCCCEEEEEeCcCCCCccHH-HHHHHHHHHcC-CCEEEEECCCCCCHH
Confidence 8899999999998 445555556666666 58999999999999865543 23334444334 489999999999999
Q ss_pred HHHHHHHhhCCCC
Q 014942 273 DIRDWILTKLPLG 285 (415)
Q Consensus 273 eL~~~L~~~l~~~ 285 (415)
+++++|.+.++..
T Consensus 185 eL~~~L~~~l~~~ 197 (423)
T 3qq5_A 185 DIGKTISEILPGD 197 (423)
T ss_dssp THHHHHHHHSCCC
T ss_pred HHHHHHHHhhhhh
Confidence 9999999999765
No 120
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.84 E-value=7.7e-21 Score=172.24 Aligned_cols=160 Identities=21% Similarity=0.199 Sum_probs=104.4
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEe--CCCeeEEEEeCCCCchhhhhhHhHHHHHHHHh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~--~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~ 191 (415)
+..+|+++|.+|||||||+|+|++..+.. ...+++.......+. .....+.+|||||. ..+..+ +..
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~-------~~~ 92 (207)
T 2fv8_A 24 IRKKLVVVGDGACGKTCLLIVFSKDEFPE--VYVPTVFENYVADIEVDGKQVELALWDTAGQ--EDYDRL-------RPL 92 (207)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCC---------CCEEEEEEEETTEEEEEEEEECTTC--TTCTTT-------GGG
T ss_pred cCcEEEEECcCCCCHHHHHHHHhcCCCCC--cCCCcccceEEEEEEECCEEEEEEEEECCCc--HHHHHH-------HHh
Confidence 45699999999999999999999887642 222222222222222 23468999999995 333322 334
Q ss_pred hhcccceEEEEecCCCCC--chHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHHHH-------------HHHhhcCC
Q 014942 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKL-------------EWYEKFTD 256 (415)
Q Consensus 192 ~~~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~~~-------------~~~~~~~~ 256 (415)
++..+|++|+|+|++++. ......+...+.....+.|+++|+||+|+.......... ..+....+
T Consensus 93 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 172 (207)
T 2fv8_A 93 SYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQ 172 (207)
T ss_dssp GCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTT
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcC
Confidence 578999999999998643 333233333333323589999999999997543222111 11222233
Q ss_pred CccEEEcccCCCCCHHHHHHHHHhhCCC
Q 014942 257 VDEVIPVSAKYGHGVEDIRDWILTKLPL 284 (415)
Q Consensus 257 ~~~i~~vSA~~g~gv~eL~~~L~~~l~~ 284 (415)
..+++++||++|.|+++++++|.+.+..
T Consensus 173 ~~~~~~~SA~~g~gi~el~~~l~~~i~~ 200 (207)
T 2fv8_A 173 AYDYLECSAKTKEGVREVFETATRAALQ 200 (207)
T ss_dssp CSEEEECCTTTCTTHHHHHHHHHHHHHS
T ss_pred CCEEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence 3479999999999999999999987653
No 121
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.84 E-value=2e-20 Score=182.09 Aligned_cols=158 Identities=19% Similarity=0.196 Sum_probs=112.1
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~ 193 (415)
+..+|+|+|.+|||||||+++|++..+... .| |.......+...+..+.|||||| ++.+..+ +..++
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~--~p--T~~~~~~~~~~~~~~l~i~Dt~G--~~~~~~~-------~~~~~ 230 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIVTT--IP--TIGFNVETVEYKNISFTVWDVGG--QDKIRPL-------WRHYF 230 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCEEE--EE--ETTEEEEEEEETTEEEEEEECC-------CCS-------HHHHH
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCCCc--cc--ccceEEEEEecCcEEEEEEECCC--CHhHHHH-------HHHHh
Confidence 556999999999999999999998886432 22 33333445666788999999999 4444433 33447
Q ss_pred cccceEEEEecCCCCC--chHHHHHHHHhccc-CCCCCEEEEEeCCCCCChhHHHHHHHHHhhc---CCCccEEEcccCC
Q 014942 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEKF---TDVDEVIPVSAKY 267 (415)
Q Consensus 194 ~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~-~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~---~~~~~i~~vSA~~ 267 (415)
..+|++|+|+|+++.. .....++...+... ..+.|+++|+||+|+............+... ....+++++||++
T Consensus 231 ~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~vSAk~ 310 (329)
T 3o47_A 231 QNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATS 310 (329)
T ss_dssp TTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCCSSCEEEEECBTTT
T ss_pred ccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhhhhcCCCEEEEEECCC
Confidence 8999999999997644 44555666655442 2478999999999998654444444433321 1234799999999
Q ss_pred CCCHHHHHHHHHhhCCC
Q 014942 268 GHGVEDIRDWILTKLPL 284 (415)
Q Consensus 268 g~gv~eL~~~L~~~l~~ 284 (415)
|.||++|+++|.+.+..
T Consensus 311 g~gi~el~~~l~~~l~~ 327 (329)
T 3o47_A 311 GDGLYEGLDWLSNQLRN 327 (329)
T ss_dssp TBTHHHHHHHHHHHHTC
T ss_pred CcCHHHHHHHHHHHHHh
Confidence 99999999999987754
No 122
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.84 E-value=6.4e-21 Score=172.27 Aligned_cols=159 Identities=17% Similarity=0.135 Sum_probs=106.7
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEE--eCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC--SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~--~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~ 191 (415)
+..+|+|+|.+|||||||+|+|++..+.. ...+..+.+.....+ ......+.+|||||. ..+..+ +..
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~--~~~~~~-------~~~ 76 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDDTYTN-DYISTIGVDFKIKTVELDGKTVKLQIWDTAGQ--ERFRTI-------TSS 76 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCCCCT-TCCCSSCCCEEEEEEEETTEEEEEEEECCTTT--TTTTCC-------CGG
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCcccceeEEEEEEECCEEEEEEEEeCCCh--HHHHHH-------HHH
Confidence 44699999999999999999999877642 222333322222222 333458999999994 333322 345
Q ss_pred hhcccceEEEEecCCCCC--chHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHH-HHHHHHHhhcCCCccEEEcccCCC
Q 014942 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYG 268 (415)
Q Consensus 192 ~~~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g 268 (415)
++..+|++|+|+|++++. .....|+..+......+.|+++|+||+|+.....+ ......+....+ .+++++||++|
T Consensus 77 ~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~g 155 (206)
T 2bcg_Y 77 YYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANK-MPFLETSALDS 155 (206)
T ss_dssp GGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTT-CCEEECCTTTC
T ss_pred hccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcC-CeEEEEeCCCC
Confidence 578999999999998753 23333443333322357899999999999754321 112222222233 48999999999
Q ss_pred CCHHHHHHHHHhhCC
Q 014942 269 HGVEDIRDWILTKLP 283 (415)
Q Consensus 269 ~gv~eL~~~L~~~l~ 283 (415)
.|+++++++|.+.+.
T Consensus 156 ~gi~~l~~~l~~~i~ 170 (206)
T 2bcg_Y 156 TNVEDAFLTMARQIK 170 (206)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999998764
No 123
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.84 E-value=6.6e-21 Score=173.87 Aligned_cols=161 Identities=22% Similarity=0.215 Sum_probs=102.9
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEE--EeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~--~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~ 191 (415)
...+|+|+|.+|||||||+|+|++.....++..+.++.+..... +......+.+|||+|.... .. . ....
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~-~~-----~--l~~~ 107 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGE-NE-----W--LHDH 107 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHH-HH-----H--HHHC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcch-hh-----h--HHHH
Confidence 44689999999999999999999765433343333333322222 3333456789999995221 11 1 1244
Q ss_pred hhcccceEEEEecCCCCC--chHHHHHHHHhcc-cCCCCCEEEEEeCCCCCChhHHH-HHHHHHhhcCCCccEEEcccCC
Q 014942 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGD-HKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKY 267 (415)
Q Consensus 192 ~~~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~-~~~~~piilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~i~~vSA~~ 267 (415)
+++.+|++|+|+|.++.. .....|+..+... ...+.|+++|+||+|+...+.+. .....+....+ .++++|||++
T Consensus 108 ~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~-~~~~e~SAk~ 186 (211)
T 2g3y_A 108 CMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFD-CKFIETSAAV 186 (211)
T ss_dssp CCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHT-CEEEECBTTT
T ss_pred HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcC-CEEEEEeCCC
Confidence 578899999999998643 3334444333322 12579999999999996432221 11112222222 4799999999
Q ss_pred CCCHHHHHHHHHhhCC
Q 014942 268 GHGVEDIRDWILTKLP 283 (415)
Q Consensus 268 g~gv~eL~~~L~~~l~ 283 (415)
|.||+++|++|.+.+.
T Consensus 187 g~~v~elf~~l~~~i~ 202 (211)
T 2g3y_A 187 QHNVKELFEGIVRQVR 202 (211)
T ss_dssp TBSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999988663
No 124
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.84 E-value=1.3e-20 Score=168.94 Aligned_cols=157 Identities=16% Similarity=0.147 Sum_probs=104.1
Q ss_pred CCccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEE--EEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHH
Q 014942 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRIL--GICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (415)
Q Consensus 113 ~~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~--~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~ 190 (415)
.+..+|+++|.+|||||||+|+|++..+.. ....++..... ..+......+.+|||||... ..+ +.
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~---~~~-------~~ 93 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIW--EYDPTLESTYRHQATIDDEVVSMEILDTAGQED---TIQ-------RE 93 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCCCS--CCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC---CHH-------HH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCc--ccCCCCCceEEEEEEECCEEEEEEEEECCCCCc---ccc-------hh
Confidence 355799999999999999999999887642 22223222222 22333456799999999632 211 33
Q ss_pred hhhcccceEEEEecCCCCC--chHHHHHHHHhccc-CCCCCEEEEEeCCCCCChhHH--HHHHHHHhhcCCCccEEEccc
Q 014942 191 SAGINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEI--AKKLEWYEKFTDVDEVIPVSA 265 (415)
Q Consensus 191 ~~~~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~-~~~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~i~~vSA 265 (415)
.++..+|++++|+|++++. .....++..+.... ..+.|+++|+||+|+.....+ .......... + .+++++||
T Consensus 94 ~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~-~-~~~~~~Sa 171 (196)
T 2atv_A 94 GHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATEL-A-CAFYECSA 171 (196)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHH-T-SEEEECCT
T ss_pred hhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHh-C-CeEEEECC
Confidence 4578899999999998643 23333333332211 257899999999999653221 2222222222 2 48999999
Q ss_pred CCCC-CHHHHHHHHHhhCC
Q 014942 266 KYGH-GVEDIRDWILTKLP 283 (415)
Q Consensus 266 ~~g~-gv~eL~~~L~~~l~ 283 (415)
++|. |+++++++|.+.+.
T Consensus 172 ~~g~~gi~~l~~~l~~~i~ 190 (196)
T 2atv_A 172 CTGEGNITEIFYELCREVR 190 (196)
T ss_dssp TTCTTCHHHHHHHHHHHHH
T ss_pred CcCCcCHHHHHHHHHHHHH
Confidence 9999 99999999987653
No 125
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.84 E-value=3.7e-20 Score=187.03 Aligned_cols=200 Identities=17% Similarity=0.140 Sum_probs=129.3
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeee------------------------------eCCCCceEEeEEEEEeCCCe
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIV------------------------------TNKPQTTRHRILGICSGPEY 163 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~------------------------------~~~~~tt~~~~~~~~~~~~~ 163 (415)
...+|+++|++|+|||||+|+|++....+. ...++.|.+.....+...+.
T Consensus 16 ~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~~ 95 (439)
T 3j2k_7 16 EHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEKK 95 (439)
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCCe
Confidence 446899999999999999999965432211 12256777777777888888
Q ss_pred eEEEEeCCCCchhhhhhHhHHHHHHHHhhhcccceEEEEecCCCCCc-------hHHHHHHHHhcccCCCCC-EEEEEeC
Q 014942 164 QMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPE-------RIDEILEEGVGDHKDKLP-ILLVLNK 235 (415)
Q Consensus 164 ~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~-------~~~~~l~~~l~~~~~~~p-iilV~NK 235 (415)
++.||||||+ .. +...+..++..+|++|+|+|++++.. .+.......+.. .+.| +++|+||
T Consensus 96 ~~~iiDTPGh--~~-------f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~--~~v~~iIvviNK 164 (439)
T 3j2k_7 96 HFTILDAPGH--KS-------FVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT--AGVKHLIVLINK 164 (439)
T ss_pred EEEEEECCCh--HH-------HHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH--cCCCeEEEEeec
Confidence 9999999995 32 34455666889999999999998753 344444444444 5677 9999999
Q ss_pred CCCCCh----hHHHHHHH----HHhhcC----CCccEEEcccCCCCCHHHHHH-----------HHHhhCCCCCCCCCCC
Q 014942 236 KDLIKP----GEIAKKLE----WYEKFT----DVDEVIPVSAKYGHGVEDIRD-----------WILTKLPLGPAYYPKF 292 (415)
Q Consensus 236 ~Dl~~~----~~~~~~~~----~~~~~~----~~~~i~~vSA~~g~gv~eL~~-----------~L~~~l~~~~~~~~~~ 292 (415)
+|+... .......+ .+.... ...+++++||++|.|+.++.+ .+++.++. .
T Consensus 165 ~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~~~~w~~g~~L~~~l~~i~~------~- 237 (439)
T 3j2k_7 165 MDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSDFCPWYIGLPFIPYLDNLPN------F- 237 (439)
T ss_pred CCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccccccccCchHHHHHHHhCCC------C-
Confidence 999642 11222222 222111 135799999999999999544 22223332 1
Q ss_pred CccccCCchhHHHHHHHHHHHHhhcCCCCCceEEEEEEEEEecCCCeeE
Q 014942 293 QDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTRPTAKDF 341 (415)
Q Consensus 293 ~~~~t~~~~~~~i~eiireki~~~~~~eipys~~v~i~~~~~~~~~~~~ 341 (415)
...++.|.++.+.++. + ..|-....++..|..+.+..+.
T Consensus 238 -~~~~~~p~r~~v~~~~--------~-~~G~v~~G~v~~G~l~~Gd~v~ 276 (439)
T 3j2k_7 238 -NRSVDGPIRLPIVDKY--------K-DMGTVVLGKLESGSIFKGQQLV 276 (439)
T ss_pred -ccCCCCCeEEEEEEEE--------c-CCCeEEEEEEEeeEEecCCEEE
Confidence 2234456655554332 2 3455566777888777654433
No 126
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.84 E-value=4.4e-21 Score=171.20 Aligned_cols=159 Identities=19% Similarity=0.111 Sum_probs=103.6
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeC-------CCCceEEeEEE-----EEeCCCeeEEEEeCCCCchhhhhhH
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTN-------KPQTTRHRILG-----ICSGPEYQMILYDTPGIIEKKIHML 181 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~-------~~~tt~~~~~~-----~~~~~~~~l~liDtpG~~~~~~~~l 181 (415)
+..+|+++|.+|||||||++.+.+........ ....|...... .+......+.+|||||. ..+..+
T Consensus 13 ~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~ 90 (198)
T 3t1o_A 13 INFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQ--VFYNAS 90 (198)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSC--CSCSHH
T ss_pred cccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCCh--HHHHHH
Confidence 45699999999999999998887654321111 01112211111 12334568999999995 334333
Q ss_pred hHHHHHHHHhhhcccceEEEEecCCCCCc--------hHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHHHHHHHhh
Q 014942 182 DSMMMKNVRSAGINADCIVVLVDACKAPE--------RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEK 253 (415)
Q Consensus 182 ~~~~~~~~~~~~~~aD~ii~VvD~~~~~~--------~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~ 253 (415)
+..+++.+|++|+|+|++++.. ....|+.+. +....+.|+++|+||+|+.......+..+...
T Consensus 91 -------~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~-~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~- 161 (198)
T 3t1o_A 91 -------RKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEY-GLTLDDVPIVIQVNKRDLPDALPVEMVRAVVD- 161 (198)
T ss_dssp -------HHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHT-TCCTTSSCEEEEEECTTSTTCCCHHHHHHHHC-
T ss_pred -------HHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhh-ccccCCCCEEEEEEchhcccccCHHHHHHHHH-
Confidence 3445889999999999985421 122222222 22236899999999999976543343333333
Q ss_pred cCCCccEEEcccCCCCCHHHHHHHHHhhCC
Q 014942 254 FTDVDEVIPVSAKYGHGVEDIRDWILTKLP 283 (415)
Q Consensus 254 ~~~~~~i~~vSA~~g~gv~eL~~~L~~~l~ 283 (415)
..+..+++++||++|.|+++++++|.+.+.
T Consensus 162 ~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~ 191 (198)
T 3t1o_A 162 PEGKFPVLEAVATEGKGVFETLKEVSRLVL 191 (198)
T ss_dssp TTCCSCEEECBGGGTBTHHHHHHHHHHHHH
T ss_pred hcCCceEEEEecCCCcCHHHHHHHHHHHHH
Confidence 334448999999999999999999987653
No 127
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.83 E-value=9.5e-20 Score=179.36 Aligned_cols=167 Identities=25% Similarity=0.380 Sum_probs=119.7
Q ss_pred CCccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhh
Q 014942 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (415)
Q Consensus 113 ~~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~ 192 (415)
.+.++|+++|.+|||||||+|+|++.... +...+++|.......+...+..+.+|||||+...................
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 243 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPE-IASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILAL 243 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCE-EECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCc-cCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHH
Confidence 35669999999999999999999998743 56778888777666666677899999999975432222221112223344
Q ss_pred hcccceEEEEecCCCCC----chHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHHHHHHHhhcCCCccEEEcccCCC
Q 014942 193 GINADCIVVLVDACKAP----ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYG 268 (415)
Q Consensus 193 ~~~aD~ii~VvD~~~~~----~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g 268 (415)
...+|++++|+|++++. .....++..+.... .+.|+++|+||+|+.....+......+.. ...+++++||++|
T Consensus 244 ~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~-~~~piilV~NK~Dl~~~~~~~~~~~~~~~--~~~~~~~iSA~~g 320 (357)
T 2e87_A 244 RYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF-KDLPFLVVINKIDVADEENIKRLEKFVKE--KGLNPIKISALKG 320 (357)
T ss_dssp GGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHT-TTSCEEEEECCTTTCCHHHHHHHHHHHHH--TTCCCEECBTTTT
T ss_pred HhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhc-CCCCEEEEEECcccCChHHHHHHHHHHHh--cCCCeEEEeCCCC
Confidence 55799999999987643 23334444433321 37999999999999876665444444333 2347999999999
Q ss_pred CCHHHHHHHHHhhCC
Q 014942 269 HGVEDIRDWILTKLP 283 (415)
Q Consensus 269 ~gv~eL~~~L~~~l~ 283 (415)
.|+++|+++|.+.+.
T Consensus 321 ~gi~~l~~~i~~~l~ 335 (357)
T 2e87_A 321 TGIDLVKEEIIKTLR 335 (357)
T ss_dssp BTHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH
Confidence 999999999998774
No 128
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.83 E-value=1.1e-20 Score=172.16 Aligned_cols=159 Identities=16% Similarity=0.152 Sum_probs=103.9
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEE--EEEeCC----------CeeEEEEeCCCCchhhhhhH
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRIL--GICSGP----------EYQMILYDTPGIIEKKIHML 181 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~--~~~~~~----------~~~l~liDtpG~~~~~~~~l 181 (415)
+..+|+|+|.+|||||||+|+|++..+.. ...+..+.+... ..+... ...+.|||||| +..+.
T Consensus 24 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G--~~~~~-- 98 (217)
T 2f7s_A 24 YLIKLLALGDSGVGKTTFLYRYTDNKFNP-KFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAG--QERFR-- 98 (217)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHCSCCCC-EEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEES--HHHHH--
T ss_pred eeEEEEEECcCCCCHHHHHHHHhcCCCCc-CCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCC--cHhHH--
Confidence 45699999999999999999999876531 111111112111 122222 56899999999 33332
Q ss_pred hHHHHHHHHhhhcccceEEEEecCCCCC--chHHHHHHHHhcccC-CCCCEEEEEeCCCCCChhHH-HHHHHHHhhcCCC
Q 014942 182 DSMMMKNVRSAGINADCIVVLVDACKAP--ERIDEILEEGVGDHK-DKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDV 257 (415)
Q Consensus 182 ~~~~~~~~~~~~~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~-~~~piilV~NK~Dl~~~~~~-~~~~~~~~~~~~~ 257 (415)
..+..++..+|++|+|+|++++. .....|+..+..... .+.|+++|+||+|+.....+ ......+....+
T Consensus 99 -----~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~- 172 (217)
T 2f7s_A 99 -----SLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYG- 172 (217)
T ss_dssp -----HHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTT-
T ss_pred -----hHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCC-
Confidence 33556688999999999998653 222333333322211 57899999999999753222 122222322223
Q ss_pred ccEEEcccCCCCCHHHHHHHHHhhCC
Q 014942 258 DEVIPVSAKYGHGVEDIRDWILTKLP 283 (415)
Q Consensus 258 ~~i~~vSA~~g~gv~eL~~~L~~~l~ 283 (415)
.+++++||++|.|+++++++|.+.+.
T Consensus 173 ~~~~~~Sa~~g~gi~~l~~~l~~~i~ 198 (217)
T 2f7s_A 173 IPYFETSAATGQNVEKAVETLLDLIM 198 (217)
T ss_dssp CCEEEEBTTTTBTHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 47999999999999999999988664
No 129
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.83 E-value=6e-21 Score=169.47 Aligned_cols=158 Identities=16% Similarity=0.131 Sum_probs=103.4
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEE--EeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~--~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~ 191 (415)
+..+|+++|.+|||||||+|+|++..+. .....|........ +......+.+|||||. ..+..+ ...
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~-------~~~ 74 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKDCFP--ENYVPTVFENYTASFEIDTQRIELSLWDTSGS--PYYDNV-------RPL 74 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCC--SSCCCCSEEEEEEEEECSSCEEEEEEEEECCS--GGGTTT-------GGG
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCccceeEEEEEEECCEEEEEEEEECCCC--hhhhhh-------HHh
Confidence 4569999999999999999999987764 22222322222222 3344568999999995 333332 334
Q ss_pred hhcccceEEEEecCCCCCc--hHHHHHHHHhcccCCCCCEEEEEeCCCCCChhH------------H-HHHHHHHhhcCC
Q 014942 192 AGINADCIVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE------------I-AKKLEWYEKFTD 256 (415)
Q Consensus 192 ~~~~aD~ii~VvD~~~~~~--~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~------------~-~~~~~~~~~~~~ 256 (415)
++..+|++|+|+|++++.. .....+...+.....+.|+++|+||+|+..... + .+....+....+
T Consensus 75 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 154 (184)
T 1m7b_A 75 SYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIG 154 (184)
T ss_dssp GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHT
T ss_pred hcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcC
Confidence 5789999999999986532 221222233333235799999999999974211 1 111222222223
Q ss_pred CccEEEcccC-CCCCHHHHHHHHHhhC
Q 014942 257 VDEVIPVSAK-YGHGVEDIRDWILTKL 282 (415)
Q Consensus 257 ~~~i~~vSA~-~g~gv~eL~~~L~~~l 282 (415)
..++++|||+ +|.|++++++.|.+.+
T Consensus 155 ~~~~~e~Sa~~~~~gi~~l~~~i~~~~ 181 (184)
T 1m7b_A 155 AATYIECSALQSENSVRDIFHVATLAC 181 (184)
T ss_dssp CSEEEECBTTTBHHHHHHHHHHHHHHH
T ss_pred CcEEEEeeecCCCcCHHHHHHHHHHHH
Confidence 4589999999 6899999999998764
No 130
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.83 E-value=7.5e-21 Score=174.44 Aligned_cols=159 Identities=15% Similarity=0.166 Sum_probs=102.4
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCC--CeeEEEEeCCCCchhhhhhHhHHHHHHHHh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~--~~~l~liDtpG~~~~~~~~l~~~~~~~~~~ 191 (415)
+..+|+|+|.+|||||||+|+|++..+..... +..+.......+... ...+.+|||||. ..+..+ +..
T Consensus 12 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~-------~~~ 81 (223)
T 3cpj_B 12 LLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSK-STIGVEFATRTLEIEGKRIKAQIWDTAGQ--ERYRAI-------TSA 81 (223)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHHCCCCC-------CCSEEEEEEEETTEEEEEEEECCTTT--TTTTCC-------CGG
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCCCCCCC-CcccceeEEEEEEECCEEEEEEEEECCCc--cchhhh-------HHH
Confidence 34689999999999999999999887653221 222222222222233 368999999994 333332 345
Q ss_pred hhcccceEEEEecCCCCC--chHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHH--HHHHHHHhhcCCCccEEEcccCC
Q 014942 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI--AKKLEWYEKFTDVDEVIPVSAKY 267 (415)
Q Consensus 192 ~~~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~i~~vSA~~ 267 (415)
+++.+|++|+|+|++++. .....|+..+......+.|+++|+||+|+.....+ ......... .+ .+++++||++
T Consensus 82 ~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~-~~-~~~~~~Sa~~ 159 (223)
T 3cpj_B 82 YYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQE-NQ-LLFTETSALN 159 (223)
T ss_dssp GTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHH-TT-CEEEECCCC-
T ss_pred HhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHH-cC-CEEEEEeCCC
Confidence 578999999999998754 23334444333322357899999999999753222 222222222 23 4899999999
Q ss_pred CCCHHHHHHHHHhhCCC
Q 014942 268 GHGVEDIRDWILTKLPL 284 (415)
Q Consensus 268 g~gv~eL~~~L~~~l~~ 284 (415)
|.||++++++|.+.+..
T Consensus 160 ~~gi~~l~~~l~~~i~~ 176 (223)
T 3cpj_B 160 SENVDKAFEELINTIYQ 176 (223)
T ss_dssp CCCHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999988765
No 131
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.83 E-value=8.4e-21 Score=171.07 Aligned_cols=159 Identities=20% Similarity=0.218 Sum_probs=77.1
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceE-EeEEEEEeCC----CeeEEEEeCCCCchhhhhhHhHHHHHH
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTR-HRILGICSGP----EYQMILYDTPGIIEKKIHMLDSMMMKN 188 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~-~~~~~~~~~~----~~~l~liDtpG~~~~~~~~l~~~~~~~ 188 (415)
+..+|+|+|.+|||||||+|+|++...........|+. +.....+... ...+.+|||||. ..+ ...
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~--~~~-------~~~ 89 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGS--DLY-------KEQ 89 (208)
T ss_dssp EEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTT--HHH-------HHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCc--HHH-------HHH
Confidence 44699999999999999999999883222334444443 3333334433 568999999995 222 233
Q ss_pred HHhhhcccceEEEEecCCCCC--chHHHHHHHHhcccC---CCCCEEEEEeCCCCCC-hhHH--HHHHHHHhhcCCCccE
Q 014942 189 VRSAGINADCIVVLVDACKAP--ERIDEILEEGVGDHK---DKLPILLVLNKKDLIK-PGEI--AKKLEWYEKFTDVDEV 260 (415)
Q Consensus 189 ~~~~~~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~---~~~piilV~NK~Dl~~-~~~~--~~~~~~~~~~~~~~~i 260 (415)
+..++..+|++|+|+|++++. .....|+..+..... .+.|+++|+||+|+.. ...+ ......... .+ .++
T Consensus 90 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~-~~-~~~ 167 (208)
T 2yc2_C 90 ISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATT-NT-LDF 167 (208)
T ss_dssp HSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHH-TT-CEE
T ss_pred HHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHH-cC-CEE
Confidence 566789999999999998754 333444444433322 4789999999999976 3322 222233332 23 489
Q ss_pred EEcccCC-CCCHHHHHHHHHhhCC
Q 014942 261 IPVSAKY-GHGVEDIRDWILTKLP 283 (415)
Q Consensus 261 ~~vSA~~-g~gv~eL~~~L~~~l~ 283 (415)
+++||++ |.|+++++++|.+.+.
T Consensus 168 ~~~Sa~~~~~gi~~l~~~i~~~~~ 191 (208)
T 2yc2_C 168 FDVSANPPGKDADAPFLSIATTFY 191 (208)
T ss_dssp EECCC-------CHHHHHHHHHHH
T ss_pred EEeccCCCCcCHHHHHHHHHHHHH
Confidence 9999999 9999999999998764
No 132
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.83 E-value=1.2e-20 Score=184.16 Aligned_cols=168 Identities=24% Similarity=0.266 Sum_probs=117.9
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCC-eeEEEEeCCCCchhh--hhhHhHHHHHHHHhh
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE-YQMILYDTPGIIEKK--IHMLDSMMMKNVRSA 192 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~-~~l~liDtpG~~~~~--~~~l~~~~~~~~~~~ 192 (415)
++|+|+|.+|||||||+|+|++.+.. +..++.+|..+....+...+ ..+.+|||||+.... ...+... +...
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~-i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~----fl~~ 233 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPK-IADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQ----FLRH 233 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCE-ESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHH----HHHH
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCc-cccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHH----HHHH
Confidence 37999999999999999999987754 47788888887777777664 789999999974311 1223222 2334
Q ss_pred hcccceEEEEecCCC---CC--chHHHHHHHHhccc--CCCCCEEEEEeCCCCCChhHHHHHHHHHhhcCC-CccEEEcc
Q 014942 193 GINADCIVVLVDACK---AP--ERIDEILEEGVGDH--KDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTD-VDEVIPVS 264 (415)
Q Consensus 193 ~~~aD~ii~VvD~~~---~~--~~~~~~l~~~l~~~--~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~-~~~i~~vS 264 (415)
+..+|++|+|+|+++ .. .....++.++.... ..++|+++|+||+|+....+. .+.+..... ..+++++|
T Consensus 234 i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e~---~~~l~~~l~~~~~v~~iS 310 (342)
T 1lnz_A 234 IERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAEN---LEAFKEKLTDDYPVFPIS 310 (342)
T ss_dssp HHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHH---HHHHHHHCCSCCCBCCCS
T ss_pred HHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCHHH---HHHHHHHhhcCCCEEEEE
Confidence 567999999999976 22 23333333332211 147999999999999865421 122222222 25789999
Q ss_pred cCCCCCHHHHHHHHHhhCCCCCC--CCCC
Q 014942 265 AKYGHGVEDIRDWILTKLPLGPA--YYPK 291 (415)
Q Consensus 265 A~~g~gv~eL~~~L~~~l~~~~~--~~~~ 291 (415)
|+++.|+++|+++|.+.+...++ .|+.
T Consensus 311 A~tg~gi~eL~~~l~~~l~~~~~~~~y~~ 339 (342)
T 1lnz_A 311 AVTREGLRELLFEVANQLENTPEFPLYDE 339 (342)
T ss_dssp SCCSSTTHHHHHHHHHHHTSCCCCCSSCS
T ss_pred CCCCcCHHHHHHHHHHHHhhCccccCCCc
Confidence 99999999999999999887665 5554
No 133
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.82 E-value=1.1e-20 Score=168.42 Aligned_cols=157 Identities=15% Similarity=0.116 Sum_probs=104.5
Q ss_pred CCccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEE--EEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHH
Q 014942 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (415)
Q Consensus 113 ~~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~--~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~ 190 (415)
.+..+|+++|.+|||||||+|+|++..+. .....|+...... .+......+.+|||||. ..+..+ .
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~--------~ 86 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTKRFI--SEYDPNLEDTYSSEETVDHQPVHLRVMDTADL--DTPRNC--------E 86 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----CCCT--------H
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhCCCC--cccCCCccceeeEEEEECCEEEEEEEEECCCC--CcchhH--------H
Confidence 35569999999999999999999987753 3444454433322 23344568899999994 333332 2
Q ss_pred hhhcccceEEEEecCCCCC--chHHHHHHHHhccc---CCCCCEEEEEeCCCCCChhHH--HHHHHHHhhcCCCccEEEc
Q 014942 191 SAGINADCIVVLVDACKAP--ERIDEILEEGVGDH---KDKLPILLVLNKKDLIKPGEI--AKKLEWYEKFTDVDEVIPV 263 (415)
Q Consensus 191 ~~~~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~---~~~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~i~~v 263 (415)
.++..+|++++|+|+++.. .....|+..+.... ..+.|+++|+||+|+.....+ .+..+.... .+ .+++++
T Consensus 87 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~-~~-~~~~e~ 164 (187)
T 3c5c_A 87 RYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGR-FG-CLFFEV 164 (187)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHH-HT-CEEEEC
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHH-cC-CcEEEE
Confidence 3468899999999998643 33334444333221 157999999999999643221 222222222 23 389999
Q ss_pred cc-CCCCCHHHHHHHHHhhCC
Q 014942 264 SA-KYGHGVEDIRDWILTKLP 283 (415)
Q Consensus 264 SA-~~g~gv~eL~~~L~~~l~ 283 (415)
|| ++|.|+++++++|.+.+.
T Consensus 165 Sa~~~g~gv~~lf~~l~~~i~ 185 (187)
T 3c5c_A 165 SACLDFEHVQHVFHEAVREAR 185 (187)
T ss_dssp CSSSCSHHHHHHHHHHHHHHH
T ss_pred eecCccccHHHHHHHHHHHHh
Confidence 99 899999999999987653
No 134
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.82 E-value=4e-22 Score=208.15 Aligned_cols=200 Identities=16% Similarity=0.143 Sum_probs=107.4
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeee------------------------------CCCCceEEeEEEEEeCCCe
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVT------------------------------NKPQTTRHRILGICSGPEY 163 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~------------------------------~~~~tt~~~~~~~~~~~~~ 163 (415)
...+|+++|++|+|||||+|+|++....+.. ..+++|.+.....+...+.
T Consensus 176 ~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~~ 255 (592)
T 3mca_A 176 PVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDKK 255 (592)
T ss_dssp CEEEEEEECCSSSTHHHHHHHHHHHHHCC---------------------------------------------------
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCCe
Confidence 4568999999999999999999753222111 1456777766666777778
Q ss_pred eEEEEeCCCCchhhhhhHhHHHHHHHHhhhcccceEEEEecCCCCC-------chHHHHHHHHhcccCCCCC-EEEEEeC
Q 014942 164 QMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP-------ERIDEILEEGVGDHKDKLP-ILLVLNK 235 (415)
Q Consensus 164 ~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~-------~~~~~~l~~~l~~~~~~~p-iilV~NK 235 (415)
.+.||||||+.. +. ..+..++..+|++|+|+|++++. ..+.......+.. .+.| +|+|+||
T Consensus 256 ~i~iiDTPGh~~--f~-------~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~--lgip~iIvviNK 324 (592)
T 3mca_A 256 IYEIGDAPGHRD--FI-------SGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA--LGISEIVVSVNK 324 (592)
T ss_dssp ---CCEEESSSE--EE-------EECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH--SSCCCEEEEEEC
T ss_pred EEEEEECCChHH--HH-------HHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH--cCCCeEEEEEec
Confidence 999999999632 22 12334467899999999998743 4445555555554 4665 9999999
Q ss_pred CCCCC--hhHHHHHHHHHh----hcCCC----ccEEEcccCCCCCHH--------------HHHHHHHhhCCCCCCCCCC
Q 014942 236 KDLIK--PGEIAKKLEWYE----KFTDV----DEVIPVSAKYGHGVE--------------DIRDWILTKLPLGPAYYPK 291 (415)
Q Consensus 236 ~Dl~~--~~~~~~~~~~~~----~~~~~----~~i~~vSA~~g~gv~--------------eL~~~L~~~l~~~~~~~~~ 291 (415)
+|+.. ..........+. ...++ .+++++||++|.|+. .|++.|...+++.
T Consensus 325 iDl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~pp~------ 398 (592)
T 3mca_A 325 LDLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLVPPE------ 398 (592)
T ss_dssp GGGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSCCCS------
T ss_pred cccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhcccc------
Confidence 99975 333332222222 22232 379999999999998 7999998877631
Q ss_pred CCccccCCchhHHHHHHHHHHHHhhcCCCCCceEEEEEEEEEecCCCeeE
Q 014942 292 FQDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTRPTAKDF 341 (415)
Q Consensus 292 ~~~~~t~~~~~~~i~eiireki~~~~~~eipys~~v~i~~~~~~~~~~~~ 341 (415)
...+.|.++.+.+++ +...|-.....+..|..+.+..+.
T Consensus 399 ---~~~~~p~r~~v~~v~--------~~~~g~v~~G~v~~G~l~~Gd~v~ 437 (592)
T 3mca_A 399 ---KPYRKPLRLSIDDVY--------RSPRSVTVTGRVEAGNVQVNQVLY 437 (592)
T ss_dssp ---CTTTSCCEEEEEEEE--------EETTEEEEEEEEEESEEETTCEEE
T ss_pred ---ccccccchheeeEEE--------ecCCeEEEEEEEeeeeEccCCEEE
Confidence 112344444333322 222334455677777776654433
No 135
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.82 E-value=1.6e-19 Score=160.28 Aligned_cols=160 Identities=26% Similarity=0.359 Sum_probs=100.2
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhh--hhHhHHHHHHHHhh-
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI--HMLDSMMMKNVRSA- 192 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~--~~l~~~~~~~~~~~- 192 (415)
.+|+++|.+|||||||+|+|++..+. ....+++|......... .+.+|||||+..... ......+...+..+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 76 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVR-RGKRPGVTRKIIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFI 76 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCS-SSSSTTCTTSCEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCc-cCCCCCccceeEEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHHH
Confidence 48999999999999999999998754 45566766554433332 789999999531100 00011111112222
Q ss_pred ---hcccceEEEEecCCCCCchHHHH-----------HHHHhcccCCCCCEEEEEeCCCCCChhHHHHHHHHHhhcCCC-
Q 014942 193 ---GINADCIVVLVDACKAPERIDEI-----------LEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDV- 257 (415)
Q Consensus 193 ---~~~aD~ii~VvD~~~~~~~~~~~-----------l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~- 257 (415)
...++++++|+|..........| +...+.. .+.|+++|+||+|+.... ....+.+....+.
T Consensus 77 ~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~ 152 (190)
T 2cxx_A 77 EDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE--LDIPTIVAVNKLDKIKNV--QEVINFLAEKFEVP 152 (190)
T ss_dssp HHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH--TTCCEEEEEECGGGCSCH--HHHHHHHHHHHTCC
T ss_pred HhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHh--cCCceEEEeehHhccCcH--HHHHHHHHHHhhhh
Confidence 45567888888865321111112 2222333 679999999999998653 1112222221121
Q ss_pred -----ccEEEcccCCCCCHHHHHHHHHhhCCC
Q 014942 258 -----DEVIPVSAKYGHGVEDIRDWILTKLPL 284 (415)
Q Consensus 258 -----~~i~~vSA~~g~gv~eL~~~L~~~l~~ 284 (415)
.+++++||++|.|+++++++|.+.+..
T Consensus 153 ~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~ 184 (190)
T 2cxx_A 153 LSEIDKVFIPISAKFGDNIERLKNRIFEVIRE 184 (190)
T ss_dssp GGGHHHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred hhccCCcEEEEecCCCCCHHHHHHHHHHhcch
Confidence 258999999999999999999987653
No 136
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.82 E-value=4.8e-22 Score=178.98 Aligned_cols=160 Identities=18% Similarity=0.142 Sum_probs=99.8
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCC--CeeEEEEeCCCCchhhhhhHhHHHHHHHHh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~--~~~l~liDtpG~~~~~~~~l~~~~~~~~~~ 191 (415)
+..+|+|+|.+|||||||+|+|++..+.. ...+.++.+.....+... ...+.+|||||. ..+..+ +..
T Consensus 32 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~-------~~~ 101 (199)
T 3l0i_B 32 YLFKLLLIGDSGVGKSCLLLRFADDTYTE-SYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ--ERFRTI-------TSS 101 (199)
T ss_dssp EEEEEEEECCTTSCCTTTTTSSBCCCCCC-HHHHHHCCSEEEEEEEETTEEEEEEEECCTTC--TTCCCC-------SCC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCC-CcCCcccceEEEEEEEECCEEEEEEEEECCCc--HhHHHH-------HHH
Confidence 45699999999999999999999877642 222333333333333333 368999999994 333322 334
Q ss_pred hhcccceEEEEecCCCCC--chHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHH-HHHHHHhhcCCCccEEEcccCCC
Q 014942 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYG 268 (415)
Q Consensus 192 ~~~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~i~~vSA~~g 268 (415)
++..+|++|+|+|+++.. .....++..+......+.|+++|+||+|+.....+. .....+....+ .+++++||++|
T Consensus 102 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~vSA~~g 180 (199)
T 3l0i_B 102 YYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLG-IPFLETSAKNA 180 (199)
T ss_dssp --CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTT-CCBCCCCC---
T ss_pred HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcC-CeEEEEECCCC
Confidence 578999999999998754 233344444433323578999999999997543221 01112222223 47999999999
Q ss_pred CCHHHHHHHHHhhCCC
Q 014942 269 HGVEDIRDWILTKLPL 284 (415)
Q Consensus 269 ~gv~eL~~~L~~~l~~ 284 (415)
.|+++++++|.+.+..
T Consensus 181 ~gv~~l~~~l~~~l~~ 196 (199)
T 3l0i_B 181 TNVEQSFMTMAAEIKK 196 (199)
T ss_dssp HHHHHHHHHHTTTTTT
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999988764
No 137
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.82 E-value=3.1e-20 Score=173.51 Aligned_cols=175 Identities=15% Similarity=0.128 Sum_probs=113.5
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCCC-CceEEeEEEEEeCCCeeEEEEeCCCCchhhhh---hHhHHHHHHH
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKP-QTTRHRILGICSGPEYQMILYDTPGIIEKKIH---MLDSMMMKNV 189 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~-~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~---~l~~~~~~~~ 189 (415)
...+|+++|.+|||||||+|+|++.+.......+ ++|+..........+..+.+|||||+...... .+.......+
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~~~~ 99 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERGHCY 99 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSSTTHHHHSTTSHHHHHHH
T ss_pred CceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCCCCCcHHHHHHHHHHHH
Confidence 4569999999999999999999998876544333 47777777777888899999999998542211 1122222233
Q ss_pred HhhhcccceEEEEecCCCCCchHHHHHHHHhccc----CCCCCEEEEEeCCCCCChhH---H-----HHHHHHHhhcCCC
Q 014942 190 RSAGINADCIVVLVDACKAPERIDEILEEGVGDH----KDKLPILLVLNKKDLIKPGE---I-----AKKLEWYEKFTDV 257 (415)
Q Consensus 190 ~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~----~~~~piilV~NK~Dl~~~~~---~-----~~~~~~~~~~~~~ 257 (415)
..+...+|++|+|+|+++ ....+..+.+.+... ..+.|+++|+||+|+..... + ......+.....
T Consensus 100 ~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~~g~- 177 (247)
T 3lxw_A 100 LLSAPGPHALLLVTQLGR-FTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVAECGG- 177 (247)
T ss_dssp HHHTTCCSEEEEEEETTB-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHTTT-
T ss_pred HhcCCCCCEEEEEEeCCC-CCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHHHcCC-
Confidence 334589999999999975 544444443333321 13689999999999965321 1 112223333332
Q ss_pred ccEEEcccCC-----CCCHHHHHHHHHhhCCC-CCCCCCC
Q 014942 258 DEVIPVSAKY-----GHGVEDIRDWILTKLPL-GPAYYPK 291 (415)
Q Consensus 258 ~~i~~vSA~~-----g~gv~eL~~~L~~~l~~-~~~~~~~ 291 (415)
.++.+++.. +.|+.+|++.|.+.++. ++..|+.
T Consensus 178 -~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~~~~~~y~~ 216 (247)
T 3lxw_A 178 -RVCAFDNRATGREQEAQVEQLLGMVEGLVLEHKGAHYSN 216 (247)
T ss_dssp -CEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCC
T ss_pred -eEEEEeCCCCccccHHHHHHHHHHHHHHHHHcCCCCCCH
Confidence 344444333 68999999999999874 6777776
No 138
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.82 E-value=9.3e-20 Score=187.14 Aligned_cols=161 Identities=19% Similarity=0.166 Sum_probs=115.4
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~ 193 (415)
+..+|+|+|.+|||||||+|+|++..+... . +|.......+...+..+.+|||||. ..+..+ +..++
T Consensus 321 ~~~ki~lvG~~nvGKSsLl~~l~~~~~~~~--~--~T~~~~~~~~~~~~~~~~l~Dt~G~--~~~~~~-------~~~~~ 387 (497)
T 3lvq_E 321 KEMRILMLGLDAAGKTTILYKLKLGQSVTT--I--PTVGFNVETVTYKNVKFNVWDVGGQ--DKIRPL-------WRHYY 387 (497)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSSCCCC--C--CCSSEEEEEEESSSCEEEEEEECCC--GGGSGG-------GGGGG
T ss_pred cceeEEEEcCCCCCHHHHHHHHhcCCCCCc--C--CccceeEEEEEeCCEEEEEEECCCc--HHHHHH-------HHHHh
Confidence 456999999999999999999998875422 2 2444445556778889999999994 444433 45568
Q ss_pred cccceEEEEecCCCCC--chHHHHHHHHhccc-CCCCCEEEEEeCCCCCChhHHHHHHHHHhhc---CCCccEEEcccCC
Q 014942 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEKF---TDVDEVIPVSAKY 267 (415)
Q Consensus 194 ~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~-~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~---~~~~~i~~vSA~~ 267 (415)
..+|++|+|+|++++. .....++..++... ..++|+|+|+||+|+............+... ....++++|||++
T Consensus 388 ~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~ 467 (497)
T 3lvq_E 388 TGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATS 467 (497)
T ss_dssp TTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCCCHHHHHHHTTCTTCCSSCEEEEECBTTT
T ss_pred ccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCCCHHHHHHHhchhhhhcCCeEEEEEECCC
Confidence 9999999999998763 44455666655432 1579999999999997643333333333211 1234699999999
Q ss_pred CCCHHHHHHHHHhhCCCCCC
Q 014942 268 GHGVEDIRDWILTKLPLGPA 287 (415)
Q Consensus 268 g~gv~eL~~~L~~~l~~~~~ 287 (415)
|.||++++++|.+.+.....
T Consensus 468 g~gi~~l~~~l~~~~~~~~~ 487 (497)
T 3lvq_E 468 GDGLYEGLTWLTSNYKSKLA 487 (497)
T ss_dssp TBTHHHHHHHHHHHCC----
T ss_pred CCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999876443
No 139
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.82 E-value=2.5e-20 Score=167.17 Aligned_cols=161 Identities=22% Similarity=0.252 Sum_probs=99.9
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEE--EeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~--~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~ 191 (415)
...+|+++|.+|||||||+|+|++.....++..+.++.+..... +......+.+|||+|.... ...+ ...
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~-~~~~-------~~~ 76 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGE-NEWL-------HDH 76 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC-----CTT-------GGG
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcch-hhhH-------HHh
Confidence 34689999999999999999999754433333333333322222 3333456789999995321 1212 123
Q ss_pred hhcccceEEEEecCCCCC--chHHHHHHHHhcc-cCCCCCEEEEEeCCCCCChhHHH-HHHHHHhhcCCCccEEEcccCC
Q 014942 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGD-HKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKY 267 (415)
Q Consensus 192 ~~~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~-~~~~~piilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~i~~vSA~~ 267 (415)
+++.+|++++|+|.++.. .....++..+... ...+.|+++|+||+|+.....+. .....+....+ .++++|||++
T Consensus 77 ~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~-~~~~e~SA~~ 155 (192)
T 2cjw_A 77 CMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFD-XKFIETSAAV 155 (192)
T ss_dssp HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTT-CEEEECBTTT
T ss_pred hcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhC-CceEEecccc
Confidence 467789999999998643 3333343332221 12578999999999986432221 11112222222 4799999999
Q ss_pred CCCHHHHHHHHHhhCC
Q 014942 268 GHGVEDIRDWILTKLP 283 (415)
Q Consensus 268 g~gv~eL~~~L~~~l~ 283 (415)
|.||+++|++|.+.+.
T Consensus 156 g~~v~~lf~~l~~~~~ 171 (192)
T 2cjw_A 156 QHNVKELFEGIVRQVR 171 (192)
T ss_dssp TBSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999998764
No 140
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.81 E-value=1.8e-20 Score=170.02 Aligned_cols=158 Identities=16% Similarity=0.138 Sum_probs=103.3
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEE--eCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC--SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~--~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~ 191 (415)
+..+|+++|.+|||||||+|+|++..+. .....|+.......+ ......+.+|||||. ..+..+ ...
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~-------~~~ 95 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKDCFP--ENYVPTVFENYTASFEIDTQRIELSLWDTSGS--PYYDNV-------RPL 95 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCC--SSCCCCSEEEEEEEEESSSSEEEEEEEEECCS--GGGTTT-------GGG
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCC--CCcCCccceeEEEEEEECCEEEEEEEEeCCCc--HhhhHH-------HHh
Confidence 4569999999999999999999987764 222233322222222 334568999999995 334333 334
Q ss_pred hhcccceEEEEecCCCCC--chHHHHHHHHhcccCCCCCEEEEEeCCCCCChhH------------H-HHHHHHHhhcCC
Q 014942 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE------------I-AKKLEWYEKFTD 256 (415)
Q Consensus 192 ~~~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~------------~-~~~~~~~~~~~~ 256 (415)
++..+|++|+|+|+++.. ......+...+.....+.|+++|+||+|+..... + ......+....+
T Consensus 96 ~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 175 (205)
T 1gwn_A 96 SYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIG 175 (205)
T ss_dssp GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHT
T ss_pred hccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcC
Confidence 578999999999998653 2221222233333235789999999999964211 1 111222222223
Q ss_pred CccEEEcccC-CCCCHHHHHHHHHhhC
Q 014942 257 VDEVIPVSAK-YGHGVEDIRDWILTKL 282 (415)
Q Consensus 257 ~~~i~~vSA~-~g~gv~eL~~~L~~~l 282 (415)
..++++|||+ +|.|++++++.|.+.+
T Consensus 176 ~~~~~e~SAk~~~~gv~~lf~~l~~~~ 202 (205)
T 1gwn_A 176 AATYIECSALQSENSVRDIFHVATLAC 202 (205)
T ss_dssp CSEEEECCTTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEeeeccCCcCHHHHHHHHHHHH
Confidence 3589999999 6899999999998754
No 141
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.81 E-value=4.2e-21 Score=194.96 Aligned_cols=230 Identities=18% Similarity=0.212 Sum_probs=143.4
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCc--ee----------------------eeeC------CCCceEEeEEEEEeCCCe
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQK--LS----------------------IVTN------KPQTTRHRILGICSGPEY 163 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~--~~----------------------~~~~------~~~tt~~~~~~~~~~~~~ 163 (415)
...+|+++|++|+|||||+|+|++.. +. .+.+ ..+.|.+.....+...+.
T Consensus 6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~ 85 (458)
T 1f60_A 6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY 85 (458)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSE
T ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCCc
Confidence 34589999999999999999998641 10 0011 245565554555677788
Q ss_pred eEEEEeCCCCchhhhhhHhHHHHHHHHhhhcccceEEEEecCCCCCch-------HHHHHHHHhcccCCCCC-EEEEEeC
Q 014942 164 QMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPER-------IDEILEEGVGDHKDKLP-ILLVLNK 235 (415)
Q Consensus 164 ~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~-------~~~~l~~~l~~~~~~~p-iilV~NK 235 (415)
.+.||||||+. . +...+..++..+|++|+|+|++++... +....+..+.. .+.| +++|+||
T Consensus 86 ~~~iiDtPGh~--~-------f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~--~~v~~iivviNK 154 (458)
T 1f60_A 86 QVTVIDAPGHR--D-------FIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT--LGVRQLIVAVNK 154 (458)
T ss_dssp EEEEEECCCCT--T-------HHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH--TTCCEEEEEEEC
T ss_pred eEEEEECCCcH--H-------HHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH--cCCCeEEEEEEc
Confidence 99999999953 2 334466678999999999999875422 33333333444 4666 9999999
Q ss_pred CCCCC--hhHHHHHH----HHHhhcCC---CccEEEcccCCCCCHHH------------------------HHHHHHhhC
Q 014942 236 KDLIK--PGEIAKKL----EWYEKFTD---VDEVIPVSAKYGHGVED------------------------IRDWILTKL 282 (415)
Q Consensus 236 ~Dl~~--~~~~~~~~----~~~~~~~~---~~~i~~vSA~~g~gv~e------------------------L~~~L~~~l 282 (415)
+|+.. ........ ..+..... ..+++++||++|.|+.+ |++.|.. +
T Consensus 155 ~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~~~~~~~~~~~~~~~~tg~~~~~~Ll~~l~~-~ 233 (458)
T 1f60_A 155 MDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEATTNAPWYKGWEKETKAGVVKGKTLLEAIDA-I 233 (458)
T ss_dssp GGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBCCSSCTTCCCEEEECSSSEEEESSHHHHHHT-S
T ss_pred cccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccccccCchhhcccccccccccchHHHHHHhhc-c
Confidence 99973 32222222 22222211 25899999999999863 5555443 2
Q ss_pred CCCCCCCCCCCccccCCchhHHHHHHHH------------HHHHhhcCCC---CCceEEEEEEEEEecC--------CCe
Q 014942 283 PLGPAYYPKFQDIVSEHPERFFVGEIIR------------EKIFMQYRNE---VPYACQVNVVSYKTRP--------TAK 339 (415)
Q Consensus 283 ~~~~~~~~~~~~~~t~~~~~~~i~eiir------------eki~~~~~~e---ipys~~v~i~~~~~~~--------~~~ 339 (415)
+ |+ ...++.|.++.+.+++| ++-.....++ +|+...+.|.+..... +..
T Consensus 234 ~------~p--~~~~~~p~r~~i~~v~~~~g~G~v~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~~~~a~aG~~ 305 (458)
T 1f60_A 234 E------QP--SRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPAGVTTEVKSVEMHHEQLEQGVPGDN 305 (458)
T ss_dssp C------CC--CCCTTSCCEEEEEEEEEETTTEEEEEEECCBSCBCTTCEEEEETTTEEEEEEEEEETTEECSCBCTTCE
T ss_pred C------CC--cccCCCCcEEEEEEEEEeCCCcEEEEEEEeCCeEcCCCEEEECCCCceEEEeEEEECCeEEEEEcCCCE
Confidence 2 22 33345666666666554 3333344566 7888777877776432 211
Q ss_pred eEEEEEEEEeeCCceeEEeecCCh
Q 014942 340 DFIQVEIVVEKNSQKIILIGKGGK 363 (415)
Q Consensus 340 ~~i~~~~~~~r~~q~~iiiG~~g~ 363 (415)
..+......+++.++++++|..|.
T Consensus 306 v~i~l~gi~~~~i~rG~vl~~~~~ 329 (458)
T 1f60_A 306 VGFNVKNVSVKEIRRGNVCGDAKN 329 (458)
T ss_dssp EEEEESSCCTTTSCTTCEEEETTS
T ss_pred EEEEEcCCcccccCceeEEecCCC
Confidence 222211112577899999999874
No 142
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.81 E-value=1.2e-19 Score=185.20 Aligned_cols=161 Identities=24% Similarity=0.324 Sum_probs=112.7
Q ss_pred CCCccEEEEEecCCCCHHHHHHHHhCCce------eeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHH
Q 014942 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKL------SIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMM 185 (415)
Q Consensus 112 ~~~~~~V~ivG~~~vGKSSLln~l~~~~~------~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~ 185 (415)
.++..+|+++|++|+|||||+++|++... ......+++|.+.....+...+..+.||||||+ .. +
T Consensus 16 ~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh--~~-------~ 86 (482)
T 1wb1_A 16 DFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGH--AD-------L 86 (482)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSH--HH-------H
T ss_pred cCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCCh--HH-------H
Confidence 34567999999999999999999998761 112344556655444445557789999999994 22 3
Q ss_pred HHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHHHHH----HHhhc--CCCcc
Q 014942 186 MKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLE----WYEKF--TDVDE 259 (415)
Q Consensus 186 ~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~~~~----~~~~~--~~~~~ 259 (415)
...+..++..+|++|+|+|++++...+.......+.. .+.|+++|+||+|+.+........+ .+... ....+
T Consensus 87 ~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~--~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ 164 (482)
T 1wb1_A 87 IRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDH--FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSS 164 (482)
T ss_dssp HHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHH--TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCC
T ss_pred HHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHH--cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccce
Confidence 4455667899999999999998876666665555655 6789999999999987544332222 22221 12358
Q ss_pred EEEcccCCCCCHHHHHHHHHhhCC
Q 014942 260 VIPVSAKYGHGVEDIRDWILTKLP 283 (415)
Q Consensus 260 i~~vSA~~g~gv~eL~~~L~~~l~ 283 (415)
++++||++|.|+++|+++|.+.++
T Consensus 165 ii~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 165 IIPISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHHhhc
Confidence 999999999999999999998654
No 143
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.81 E-value=1.2e-19 Score=161.16 Aligned_cols=159 Identities=14% Similarity=0.083 Sum_probs=101.0
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCc-eEEeEEEEE-----eCCCeeEEEEeCCCCchhhhhhHhHHHHHHH
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQT-TRHRILGIC-----SGPEYQMILYDTPGIIEKKIHMLDSMMMKNV 189 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~t-t~~~~~~~~-----~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~ 189 (415)
.+|+|+|++|||||||+++|++...........| ..+.....+ ......+.+|||||. +.+..+..
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~~~------ 74 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGR--EEFYSTHP------ 74 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSH--HHHHTTSH------
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCC--HHHHHhhH------
Confidence 4899999999999999999998632212222222 222222221 124568999999994 44444432
Q ss_pred HhhhcccceEEEEecCCCCC---chHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHH----HHHHHHhhcCCCc---c
Q 014942 190 RSAGINADCIVVLVDACKAP---ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA----KKLEWYEKFTDVD---E 259 (415)
Q Consensus 190 ~~~~~~aD~ii~VvD~~~~~---~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~----~~~~~~~~~~~~~---~ 259 (415)
.++..+|++++|+|.+++. .....|+..+... ..+.|+++|+||+|+.....+. .....+....+.. +
T Consensus 75 -~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (184)
T 2zej_A 75 -HFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKAR-ASSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRD 152 (184)
T ss_dssp -HHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHH-CTTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEE
T ss_pred -HHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhh-CCCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhh
Confidence 3367899999999998763 3344455444332 2478999999999998765443 2223333333332 3
Q ss_pred EEEcccCCCC-CHHHHHHHHHhhCCC
Q 014942 260 VIPVSAKYGH-GVEDIRDWILTKLPL 284 (415)
Q Consensus 260 i~~vSA~~g~-gv~eL~~~L~~~l~~ 284 (415)
++++||++|. |+++|++.|.+.++.
T Consensus 153 ~~~~Sa~~~~~~~~~l~~~i~~~~~~ 178 (184)
T 2zej_A 153 YHFVNATEESDALAKLRKTIINESLN 178 (184)
T ss_dssp EEECCTTSCCHHHHHHHHHHHHHHHC
T ss_pred eEEEecccCchhHHHHHHHHHHHHhc
Confidence 8999999997 999999999987764
No 144
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.81 E-value=3.4e-19 Score=171.77 Aligned_cols=163 Identities=15% Similarity=0.121 Sum_probs=114.6
Q ss_pred ccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEe-CCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhh
Q 014942 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS-GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~-~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~ 193 (415)
..+|+++|.+|||||||+|+|++.....++..+++|......... .++..+.+|||||. ..+ ....+...+..++
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~--~~~--~~~~~~~~~~~~~ 78 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQ--DVF--MENYFTKQKDHIF 78 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCS--HHH--HHHHHTTTHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCc--HHH--hhhhhhhHHHHHh
Confidence 458999999999999999999988655566678888776665554 35789999999995 333 1112223455667
Q ss_pred cccceEEEEecCCCCC--chHHHH---HHHHhcccCCCCCEEEEEeCCCCCChhHH-------HHHHHHHhhcCC--Ccc
Q 014942 194 INADCIVVLVDACKAP--ERIDEI---LEEGVGDHKDKLPILLVLNKKDLIKPGEI-------AKKLEWYEKFTD--VDE 259 (415)
Q Consensus 194 ~~aD~ii~VvD~~~~~--~~~~~~---l~~~l~~~~~~~piilV~NK~Dl~~~~~~-------~~~~~~~~~~~~--~~~ 259 (415)
+.+|++|+|+|+++.. .....+ +..+ .....+.|+++|+||+|+...... ......+....+ ..+
T Consensus 79 ~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l-~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~ 157 (307)
T 3r7w_A 79 QMVQVLIHVFDVESTEVLKDIEIFAKALKQL-RKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLI 157 (307)
T ss_dssp TTCSEEEEEEETTCSCHHHHHHHHHHHHHHH-HHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCE
T ss_pred ccCCEEEEEEECCChhhHHHHHHHHHHHHHH-HHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeE
Confidence 8999999999998765 222222 2222 221257999999999999873222 123334444444 368
Q ss_pred EEEcccCCCCCHHHHHHHHHhhCC
Q 014942 260 VIPVSAKYGHGVEDIRDWILTKLP 283 (415)
Q Consensus 260 i~~vSA~~g~gv~eL~~~L~~~l~ 283 (415)
++++||++ .|+.+++..++..+-
T Consensus 158 ~~~tSa~~-~~i~e~~~~iv~~li 180 (307)
T 3r7w_A 158 GFPTSIWD-ESLYKAWSQIVCSLI 180 (307)
T ss_dssp EEECCTTS-SHHHHHHHHHHHTTC
T ss_pred EEEeeecC-ChHHHHHHHHHHHHc
Confidence 99999999 899999988887654
No 145
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.80 E-value=1.9e-19 Score=177.26 Aligned_cols=169 Identities=22% Similarity=0.198 Sum_probs=108.7
Q ss_pred EEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhccc
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~a 196 (415)
.|+|+|++|||||||+|+|++... .+.+.+++|++.....+...+..+.+|||||+.......+-..+ ..+...+..+
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~-~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f-~~tl~~~~~a 258 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQ-KVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAF-FVTLSEAKYS 258 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC------------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHH-HHHHHGGGGS
T ss_pred EEEEECCCCCCHHHHHHHHHCCCc-cccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHH-HHHHHHHHhC
Confidence 599999999999999999999876 46778888988777777777789999999997443222222223 2344567899
Q ss_pred ceEEEEecCCCCCc---hHHHHHHHHhcccC-CCCCEEEEEeCCCCCChhHH--HHHH-HHHhhc-CCCccEEEcccCCC
Q 014942 197 DCIVVLVDACKAPE---RIDEILEEGVGDHK-DKLPILLVLNKKDLIKPGEI--AKKL-EWYEKF-TDVDEVIPVSAKYG 268 (415)
Q Consensus 197 D~ii~VvD~~~~~~---~~~~~l~~~l~~~~-~~~piilV~NK~Dl~~~~~~--~~~~-~~~~~~-~~~~~i~~vSA~~g 268 (415)
|++++|+|++++.. .....+.+.+.... .+.|+++|+||+|+...... .... ...... ....+++++||++|
T Consensus 259 D~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~SA~~g 338 (364)
T 2qtf_A 259 DALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPISALKR 338 (364)
T ss_dssp SEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECBTTTT
T ss_pred CEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEECCCC
Confidence 99999999987641 11112223332221 57899999999999764311 1111 111222 22346899999999
Q ss_pred CCHHHHHHHHHhhCCCCCC
Q 014942 269 HGVEDIRDWILTKLPLGPA 287 (415)
Q Consensus 269 ~gv~eL~~~L~~~l~~~~~ 287 (415)
.|+++|+++|.+.+..+++
T Consensus 339 ~gi~~L~~~I~~~l~~~~~ 357 (364)
T 2qtf_A 339 TNLELLRDKIYQLATQLSL 357 (364)
T ss_dssp BSHHHHHHHHHHHHHHHC-
T ss_pred cCHHHHHHHHHHHhcccCC
Confidence 9999999999998765443
No 146
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.68 E-value=2.9e-21 Score=174.43 Aligned_cols=158 Identities=18% Similarity=0.146 Sum_probs=104.3
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEE--eCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC--SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~--~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~ 191 (415)
+..+|+++|.+|||||||+++|++..+. .....++.......+ ......+.+|||||. ..+. ..+..
T Consensus 29 ~~~ki~v~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~-------~~~~~ 97 (204)
T 3th5_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ--EDYD-------RLRPL 97 (204)
Confidence 5569999999999999999999987653 333344443333222 233456779999994 3332 22344
Q ss_pred hhcccceEEEEecCCCCC--chHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHH-------------HHHHHHhhcCC
Q 014942 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-------------KKLEWYEKFTD 256 (415)
Q Consensus 192 ~~~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~-------------~~~~~~~~~~~ 256 (415)
++..+|++|+|+|++++. ......+...+.....+.|+++|+||+|+....... .....+....+
T Consensus 98 ~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 177 (204)
T 3th5_A 98 SYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 177 (204)
Confidence 578999999999998654 333223333333322479999999999997542111 11111222223
Q ss_pred CccEEEcccCCCCCHHHHHHHHHhhC
Q 014942 257 VDEVIPVSAKYGHGVEDIRDWILTKL 282 (415)
Q Consensus 257 ~~~i~~vSA~~g~gv~eL~~~L~~~l 282 (415)
..+++++||++|.|+++++++|.+.+
T Consensus 178 ~~~~~~vSA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 178 AVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
Confidence 34789999999999999999998654
No 147
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.80 E-value=4.1e-19 Score=177.59 Aligned_cols=162 Identities=19% Similarity=0.195 Sum_probs=107.4
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeE--------EE------EEe-----CCCeeEEEEeCCCCc
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRI--------LG------ICS-----GPEYQMILYDTPGII 174 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~--------~~------~~~-----~~~~~l~liDtpG~~ 174 (415)
+..+|+++|++|+|||||+|+|++...........++.... .. ... .....+.||||||+
T Consensus 7 ~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh- 85 (403)
T 3sjy_A 7 PEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGH- 85 (403)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCC-
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCc-
Confidence 45699999999999999999999854321111111110000 00 000 01158999999995
Q ss_pred hhhhhhHhHHHHHHHHhhhcccceEEEEecCCCCC-chHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHHHHHHHhh
Q 014942 175 EKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP-ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEK 253 (415)
Q Consensus 175 ~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~-~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~ 253 (415)
.. +...+..++..+|++|+|+|++++. ..+...+...+... ...|+++|+||+|+.+........+.+..
T Consensus 86 -~~-------~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~-~~~~iivviNK~Dl~~~~~~~~~~~~i~~ 156 (403)
T 3sjy_A 86 -EV-------LMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII-GVKNLIIVQNKVDVVSKEEALSQYRQIKQ 156 (403)
T ss_dssp -GG-------GHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TCCCEEEEEECGGGSCHHHHHHHHHHHHH
T ss_pred -HH-------HHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc-CCCCEEEEEECccccchHHHHHHHHHHHH
Confidence 33 2334555678999999999999876 55554444444432 33589999999999876654433333322
Q ss_pred c-----CCCccEEEcccCCCCCHHHHHHHHHhhCCCC
Q 014942 254 F-----TDVDEVIPVSAKYGHGVEDIRDWILTKLPLG 285 (415)
Q Consensus 254 ~-----~~~~~i~~vSA~~g~gv~eL~~~L~~~l~~~ 285 (415)
. ....+++++||++|.|+++|+++|.+.++..
T Consensus 157 ~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~~ 193 (403)
T 3sjy_A 157 FTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKTP 193 (403)
T ss_dssp HHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred HHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCCCC
Confidence 1 1245899999999999999999999988653
No 148
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.80 E-value=6.1e-19 Score=167.22 Aligned_cols=167 Identities=16% Similarity=0.173 Sum_probs=97.7
Q ss_pred ccEEEEEecCCCCHHHHHHHHhCCceeeeeC-------CCCceEEeEEEEEeCCC--eeEEEEeCCCCch-----hhhhh
Q 014942 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTN-------KPQTTRHRILGICSGPE--YQMILYDTPGIIE-----KKIHM 180 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~-------~~~tt~~~~~~~~~~~~--~~l~liDtpG~~~-----~~~~~ 180 (415)
..+|+++|.+|+|||||+|+|++........ .+.++.......+...+ ..+.+|||||+.+ ..+..
T Consensus 8 ~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~~ 87 (274)
T 3t5d_A 8 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQP 87 (274)
T ss_dssp EEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTHH
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHHH
Confidence 3589999999999999999999887654332 22333333333344444 4899999999732 12233
Q ss_pred HhHHHHHHHHhhhcc-------------cceEEEEecCCC-CCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHH
Q 014942 181 LDSMMMKNVRSAGIN-------------ADCIVVLVDACK-APERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK 246 (415)
Q Consensus 181 l~~~~~~~~~~~~~~-------------aD~ii~VvD~~~-~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~ 246 (415)
+...+......++.. +|+++++++.+. +....+..+...+.. +.|+++|+||+|+....++..
T Consensus 88 i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~---~~pvi~V~nK~D~~~~~e~~~ 164 (274)
T 3t5d_A 88 VIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE---KVNIIPLIAKADTLTPEECQQ 164 (274)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT---TSCEEEEESSGGGSCHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc---cCCEEEEEeccCCCCHHHHHH
Confidence 332233333333332 778888886654 667777776666654 799999999999987666544
Q ss_pred HHHHHhhc--CCCccEEEcccCCCCCHHHHHHHHHhhCCC
Q 014942 247 KLEWYEKF--TDVDEVIPVSAKYGHGVEDIRDWILTKLPL 284 (415)
Q Consensus 247 ~~~~~~~~--~~~~~i~~vSA~~g~gv~eL~~~L~~~l~~ 284 (415)
....+... ....+++++||+++.|+++++++|.+.+|.
T Consensus 165 ~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~p~ 204 (274)
T 3t5d_A 165 FKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLPL 204 (274)
T ss_dssp HHHHHHHHHHHTTCCCCCC-----------CHHHHHTCSE
T ss_pred HHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCCCc
Confidence 33322211 122468999999999999999999998874
No 149
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.79 E-value=3.8e-20 Score=189.33 Aligned_cols=211 Identities=18% Similarity=0.080 Sum_probs=126.4
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCcee------------------------------eeeCCCCceEEeEEEEEeCCCe
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLS------------------------------IVTNKPQTTRHRILGICSGPEY 163 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~------------------------------~~~~~~~tt~~~~~~~~~~~~~ 163 (415)
...+|+++|++|+|||||+|+|++.... .....++.|.+.....+...+.
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 111 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRA 111 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCCc
Confidence 3468999999999999999999754111 0122346666666666777888
Q ss_pred eEEEEeCCCCchhhhhhHhHHHHHHHHhhhcccceEEEEecCCCC-------CchHHHHHHHHhcccCCCCCEEEEEeCC
Q 014942 164 QMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKA-------PERIDEILEEGVGDHKDKLPILLVLNKK 236 (415)
Q Consensus 164 ~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~-------~~~~~~~l~~~l~~~~~~~piilV~NK~ 236 (415)
.+.||||||+. . +...+..++..+|++|+|+|++++ ...+..+....+... ...|+|+|+||+
T Consensus 112 ~~~iiDTPG~~--~-------f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~-~~~~iIvviNK~ 181 (483)
T 3p26_A 112 NFTIVDAPGHR--D-------FVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL-GIHNLIIAMNKM 181 (483)
T ss_dssp EEEEECCCCCG--G-------GHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT-TCCCEEEEEECG
T ss_pred eEEEEECCCcH--H-------HHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc-CCCcEEEEEECc
Confidence 99999999963 2 234456668899999999999886 334455554444441 235699999999
Q ss_pred CCCCh--hHHHHHHHHH----hhcC---CCccEEEcccCCCCCHHH---------------HHHHHHhhCCCCCCCCCCC
Q 014942 237 DLIKP--GEIAKKLEWY----EKFT---DVDEVIPVSAKYGHGVED---------------IRDWILTKLPLGPAYYPKF 292 (415)
Q Consensus 237 Dl~~~--~~~~~~~~~~----~~~~---~~~~i~~vSA~~g~gv~e---------------L~~~L~~~l~~~~~~~~~~ 292 (415)
|+... ....+..+.+ .... ...+++++||++|.|+++ |++.|...++..|..+|
T Consensus 182 Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el~~~~~~~~wy~g~~L~~~L~~i~~~~~~~~p-- 259 (483)
T 3p26_A 182 DNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENE-- 259 (483)
T ss_dssp GGGTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSSCCCHHHHHHCCSCCHHHHHHHHHHHHHHHHT--
T ss_pred CcccchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccccCcccccccccCCCCHHHHHHHHHhhcccccc--
Confidence 99762 2222222222 2111 135899999999999974 33333333211111111
Q ss_pred CccccCCchhHHHHHHHHHHHHhhcCCCCCceEEEEEEEEEecCCCeeE
Q 014942 293 QDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTRPTAKDF 341 (415)
Q Consensus 293 ~~~~t~~~~~~~i~eiireki~~~~~~eipys~~v~i~~~~~~~~~~~~ 341 (415)
...++.|.++.+.+++|-. ...-.+-.....+..|..+.+..+.
T Consensus 260 -~~~~~~p~r~~v~~v~~~~----~~~g~g~v~~G~v~~G~l~~gd~v~ 303 (483)
T 3p26_A 260 -GINKDDPFLFSVLEIIPSK----KTSNDLALVSGKLESGSIQPGESLT 303 (483)
T ss_dssp -TCCSSSCCEEEEEEEEC-------CCSCCEEEEEEEEESEECTTCEEE
T ss_pred -cccCCCceEEEEEEEEccC----CcCCCceEEEEEEecceEccCCEEE
Confidence 1223456555555444211 0012444566778888877665443
No 150
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.79 E-value=1.3e-19 Score=188.67 Aligned_cols=199 Identities=21% Similarity=0.227 Sum_probs=123.1
Q ss_pred ccEEEEEecCCCCHHHHHHHHhCCceeee--------e------CCCCceEEeEEEEEe-----CCCeeEEEEeCCCCch
Q 014942 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIV--------T------NKPQTTRHRILGICS-----GPEYQMILYDTPGIIE 175 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~~~~~~~~--------~------~~~~tt~~~~~~~~~-----~~~~~l~liDtpG~~~ 175 (415)
..+|+|+|++|+|||||+++|+....... . ...+.|.......+. ..++.+.||||||+.
T Consensus 4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~- 82 (599)
T 3cb4_D 4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV- 82 (599)
T ss_dssp EEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG-
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch-
Confidence 35899999999999999999986321110 0 112333322222222 224789999999963
Q ss_pred hhhhhHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHHHHHHHhhcC
Q 014942 176 KKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFT 255 (415)
Q Consensus 176 ~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~ 255 (415)
.+. ..+..++..+|++|+|+|++++........+..... .+.|+++|+||+|+.... .....+.+....
T Consensus 83 -dF~-------~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~--~~ipiIvViNKiDl~~a~-~~~v~~ei~~~l 151 (599)
T 3cb4_D 83 -DFS-------YEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME--MDLEVVPVLNKIDLPAAD-PERVAEEIEDIV 151 (599)
T ss_dssp -GGH-------HHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH--TTCEEEEEEECTTSTTCC-HHHHHHHHHHHT
T ss_pred -HHH-------HHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH--CCCCEEEeeeccCccccc-HHHHHHHHHHHh
Confidence 332 234555788999999999998876655544444444 678999999999997643 222223333322
Q ss_pred CC--ccEEEcccCCCCCHHHHHHHHHhhCCCCCCCCCCCCccccCCchhHHHHHHHHHHHHhhcCCCCCceEEEEEEEEE
Q 014942 256 DV--DEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKFQDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYK 333 (415)
Q Consensus 256 ~~--~~i~~vSA~~g~gv~eL~~~L~~~l~~~~~~~~~~~~~~t~~~~~~~i~eiireki~~~~~~eipys~~v~i~~~~ 333 (415)
+. .+++++||++|.|+++|+++|.+.++.... - .+.|.+.++-. ..+.+.+|..+.+++.+++
T Consensus 152 g~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~p~~-~-------~~~p~~alI~d-------~~~d~~~G~v~~~rV~sG~ 216 (599)
T 3cb4_D 152 GIDATDAVRCSAKTGVGVQDVLERLVRDIPPPEG-D-------PEGPLQALIID-------SWFDNYLGVVSLIRIKNGT 216 (599)
T ss_dssp CCCCTTCEEECTTTCTTHHHHHHHHHHHSCCCCC-C-------TTSCCEEEEEE-------EEEETTTEEEEEEEEEESC
T ss_pred CCCcceEEEeecccCCCchhHHHHHhhcCCCccc-c-------ccCCceeeeee-------ccccccccEEEEEEEEeCE
Confidence 22 368999999999999999999999986321 1 12232221111 1235788999999999998
Q ss_pred ecCCCee
Q 014942 334 TRPTAKD 340 (415)
Q Consensus 334 ~~~~~~~ 340 (415)
.+.+..+
T Consensus 217 l~~Gd~v 223 (599)
T 3cb4_D 217 LRKGDKV 223 (599)
T ss_dssp EESSCEE
T ss_pred EecCCEE
Confidence 8765443
No 151
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.79 E-value=4.5e-19 Score=184.26 Aligned_cols=200 Identities=23% Similarity=0.283 Sum_probs=126.2
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeee--------eC------CCCceEEeEEEE--Ee---CCCeeEEEEeCCCCc
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIV--------TN------KPQTTRHRILGI--CS---GPEYQMILYDTPGII 174 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~--------~~------~~~tt~~~~~~~--~~---~~~~~l~liDtpG~~ 174 (415)
+..+|+|+|++|+|||||+++|+....... .+ ..+.|....... +. ...+.++||||||+.
T Consensus 5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~ 84 (600)
T 2ywe_A 5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHV 84 (600)
T ss_dssp GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcH
Confidence 345899999999999999999975321110 00 122222111111 21 224689999999964
Q ss_pred hhhhhhHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHHHHHHHhhc
Q 014942 175 EKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKF 254 (415)
Q Consensus 175 ~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~ 254 (415)
+ +. ..+..++..+|++|+|+|++++........+..... .+.|+++|+||+|+.... .....+.+...
T Consensus 85 d--F~-------~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~--~~ipiIvviNKiDl~~a~-~~~v~~el~~~ 152 (600)
T 2ywe_A 85 D--FS-------YEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE--QDLVIIPVINKIDLPSAD-VDRVKKQIEEV 152 (600)
T ss_dssp G--GH-------HHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH--TTCEEEEEEECTTSTTCC-HHHHHHHHHHT
T ss_pred h--HH-------HHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH--CCCCEEEEEeccCccccC-HHHHHHHHHHh
Confidence 3 32 234455789999999999999886666555444444 689999999999997643 22333444443
Q ss_pred CCC--ccEEEcccCCCCCHHHHHHHHHhhCCCCCCCCCCCCccccCCchhHHHHHHHHHHHHhhcCCCCCceEEEEEEEE
Q 014942 255 TDV--DEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKFQDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSY 332 (415)
Q Consensus 255 ~~~--~~i~~vSA~~g~gv~eL~~~L~~~l~~~~~~~~~~~~~~t~~~~~~~i~eiireki~~~~~~eipys~~v~i~~~ 332 (415)
.+. .+++++||++|.|+++|+++|.+.+|.... .+ +.|.+.++-. ..+.+..|..+.+++.++
T Consensus 153 lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp~p~~-~~-------~~pl~~lV~~-------~~~d~~~G~v~~~rV~sG 217 (600)
T 2ywe_A 153 LGLDPEEAILASAKEGIGIEEILEAIVNRIPPPKG-DP-------QKPLKALIFD-------SYYDPYRGAVAFVRIFDG 217 (600)
T ss_dssp SCCCGGGCEECBTTTTBSHHHHHHHHHHHSCCCCC-CT-------TSCCEEEEEE-------EEEETTTEEEEEEEEEES
T ss_pred hCCCcccEEEEEeecCCCchHHHHHHHHhcccccc-cc-------cCCcceeEEE-------EeecccceEEEEEEEEeC
Confidence 333 368999999999999999999999986321 11 1222111100 123566788888999999
Q ss_pred EecCCCee
Q 014942 333 KTRPTAKD 340 (415)
Q Consensus 333 ~~~~~~~~ 340 (415)
+.+.+..+
T Consensus 218 ~l~~Gd~I 225 (600)
T 2ywe_A 218 EVKPGDKI 225 (600)
T ss_dssp EECTTCEE
T ss_pred EEecCCEE
Confidence 98876544
No 152
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.79 E-value=7.8e-20 Score=180.46 Aligned_cols=191 Identities=15% Similarity=0.086 Sum_probs=124.3
Q ss_pred EEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhccc
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~a 196 (415)
+|+++|++|+|||||+++|+ ..+.|.+.....+...+..+.||||||+. .+ ...+..++..+
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~---------~~giTi~~~~~~~~~~~~~i~iiDtPGh~--~f-------~~~~~~~~~~a 84 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG---------KKGTSSDITMYNNDKEGRNMVFVDAHSYP--KT-------LKSLITALNIS 84 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS---------EEEEESSSEEEEECSSSSEEEEEECTTTT--TC-------HHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHH---------hCCEEEEeeEEEEecCCeEEEEEECCChH--HH-------HHHHHHHHHHC
Confidence 89999999999999999998 12333333344566677899999999953 32 23344557899
Q ss_pred ceEEEEecCCCCCchHHHHHHHHhcccCCCCCE-EEEEe-CCCCCChhHHHHHHHHHhhcC-----CCccEEE--cccCC
Q 014942 197 DCIVVLVDACKAPERIDEILEEGVGDHKDKLPI-LLVLN-KKDLIKPGEIAKKLEWYEKFT-----DVDEVIP--VSAKY 267 (415)
Q Consensus 197 D~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~pi-ilV~N-K~Dl~~~~~~~~~~~~~~~~~-----~~~~i~~--vSA~~ 267 (415)
|++|+|+| +.+...+....+..+.. .+.|. ++|+| |+|+ +...+....+.+.... ...++++ +||++
T Consensus 85 D~ailVvd-~~g~~~qt~e~~~~~~~--~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~ 160 (370)
T 2elf_A 85 DIAVLCIP-PQGLDAHTGECIIALDL--LGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSA 160 (370)
T ss_dssp SEEEEEEC-TTCCCHHHHHHHHHHHH--TTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTS
T ss_pred CEEEEEEc-CCCCcHHHHHHHHHHHH--cCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEeccccccc
Confidence 99999999 87777666666665555 57787 99999 9999 6544333222222211 2358999 99999
Q ss_pred ---CCCHHHHHHHHHhhCCCCCCCCCCCCccc-cCCchhHHHHHHHHHHHHhhcCCCCCceEEEEEEEEEecCCCeeE
Q 014942 268 ---GHGVEDIRDWILTKLPLGPAYYPKFQDIV-SEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTRPTAKDF 341 (415)
Q Consensus 268 ---g~gv~eL~~~L~~~l~~~~~~~~~~~~~~-t~~~~~~~i~eiireki~~~~~~eipys~~v~i~~~~~~~~~~~~ 341 (415)
|.|+++|++.|.+.++.. .+. +.. ...|.++++.++++ .+..|..+..++.++..+.+..+.
T Consensus 161 ~~~g~gi~~L~~~l~~~~~~~---~~~--~~~~~~~p~r~~v~~vf~-------~~~~G~v~~g~v~~G~l~~gd~v~ 226 (370)
T 2elf_A 161 KNPFEGVDELKARINEVAEKI---EAE--NAELNSLPARIFIDHAFN-------VTGKGCVVLGVVKQGISKDKDKTK 226 (370)
T ss_dssp SSTTTTHHHHHHHHHHHHHHH---HHH--HHHGGGSCCEEEEEEEEC-------CC---CEEEEEEEESEEETTCEEE
T ss_pred CcCCCCHHHHHHHHHhhcccc---ccC--CcccccccccccceeEEE-------cCCCceEEEEEEECCEEeeCCEEE
Confidence 999999999999887531 110 100 11121221222211 134556677788888877665443
No 153
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.79 E-value=7.3e-20 Score=189.28 Aligned_cols=236 Identities=17% Similarity=0.139 Sum_probs=151.8
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCcee---------------eeeC------CCCceEEeEEEEEeCCCeeEEEEeCCC
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLS---------------IVTN------KPQTTRHRILGICSGPEYQMILYDTPG 172 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~---------------~~~~------~~~tt~~~~~~~~~~~~~~l~liDtpG 172 (415)
|..+|+|+|+.++|||||..+|+...-. .+++ ..|.|.......+.+.++.++|+||||
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPG 109 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPG 109 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCC
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCC
Confidence 4568999999999999999999622110 0111 112222222334678899999999999
Q ss_pred CchhhhhhHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChh---HHHHHHH
Q 014942 173 IIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG---EIAKKLE 249 (415)
Q Consensus 173 ~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~---~~~~~~~ 249 (415)
+.+ |...+.++++-+|++|+|||+..+.+.+.+.+++.+.. .++|+++++||+|+...+ .+.++.+
T Consensus 110 HvD---------F~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~--~~lp~i~fINK~Dr~~ad~~~~~~~i~~ 178 (548)
T 3vqt_A 110 HQD---------FSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRM--RATPVMTFVNKMDREALHPLDVMADIEQ 178 (548)
T ss_dssp GGG---------CSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHH--TTCCEEEEEECTTSCCCCHHHHHHHHHH
T ss_pred cHH---------HHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHH--hCCceEEEEecccchhcchhHhhhhhhh
Confidence 654 23345666899999999999999999999999988888 899999999999986432 1222222
Q ss_pred HHh-----------------------------------------------------------------------------
Q 014942 250 WYE----------------------------------------------------------------------------- 252 (415)
Q Consensus 250 ~~~----------------------------------------------------------------------------- 252 (415)
.+.
T Consensus 179 ~l~~~~~p~~~Pig~~~~f~g~vdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 258 (548)
T 3vqt_A 179 HLQIECAPMTWPIGMGSSFKGTYDLLHKQLHLFSATHGGRIQSGIVIHGADDPQLDEYLGDQAEQLRMDLALLEEAGTPF 258 (548)
T ss_dssp HHTSEEEESEEEESCGGGCCEEEETTTTEEEECC-------CCCEECCSTTCTHHHHHHGGGHHHHHHHHHHHHHHCCCC
T ss_pred hcCCceEeEEeeeecCCcccceEeeeeeeeeecccccCCcccccccccccchHHHHHHHHHHHHHhhhHHHHHhhccCch
Confidence 110
Q ss_pred -----hcCCCccEEEcccCCCCCHHHHHHHHHhhCCCCCCCCCCCCccccCCchhHHHHHHHHHHHHh-hcCCCCCceEE
Q 014942 253 -----KFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKFQDIVSEHPERFFVGEIIREKIFM-QYRNEVPYACQ 326 (415)
Q Consensus 253 -----~~~~~~~i~~vSA~~g~gv~eL~~~L~~~l~~~~~~~~~~~~~~t~~~~~~~i~eiireki~~-~~~~eipys~~ 326 (415)
....+.|+++.||.+|.||+.|++.|.+.+|.. ...+.......+. +..+.+.++ |+.. ...+..|..+.
T Consensus 259 ~~e~~~~g~~~PV~~gSA~~~~Gv~~LLd~iv~~~PsP-~~~~~~~~~~~~~-~~p~~a~vf--Ki~~~~~~~~~Grla~ 334 (548)
T 3vqt_A 259 DEERYLKGELTPVFFGSAINNFGVREMLDMFVEFAPGP-QPRPAATRVVEPG-EEAFTGVVF--KIQANMDKAHRDRMAF 334 (548)
T ss_dssp CHHHHHTTSEEEEEECBGGGTBSHHHHHHHHHHHSCCS-CCEEBSSSEECTT-CSSCEEEEE--EEECC-------CEEE
T ss_pred hHHHHHhCCcceeeecccccCcCHHHHHHHHHHhCCCC-CCccccccccCCC-CcCceEEEE--EEEccCCcCCCCeEEE
Confidence 012345789999999999999999999999863 2222100001000 001111111 1110 11356778899
Q ss_pred EEEEEEEecCCCeeEEEEEEEEeeCCceeEEeecCChH
Q 014942 327 VNVVSYKTRPTAKDFIQVEIVVEKNSQKIILIGKGGKA 364 (415)
Q Consensus 327 v~i~~~~~~~~~~~~i~~~~~~~r~~q~~iiiG~~g~~ 364 (415)
++|.+|+.+.+..+++......+|.++.+++.|.+-..
T Consensus 335 ~RV~sG~l~~g~~v~~~~~~~~~rv~~l~~~~g~~~~~ 372 (548)
T 3vqt_A 335 LRICSGTFTRGMRLKHHRTGKDVTVANATIFMAQDRTG 372 (548)
T ss_dssp EEEEESCEETTCEEEETTTTEEEECTTCEECCCSSCCS
T ss_pred EEEecceecCCCEEEeeccccccccchhhhhccccccc
Confidence 99999999888777765555567777888777765443
No 154
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.79 E-value=1.1e-20 Score=193.99 Aligned_cols=159 Identities=20% Similarity=0.261 Sum_probs=117.3
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeC-CCeeEEEEeCCCCchhhhhhHhHHHHHHHHhh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG-PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~-~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~ 192 (415)
|+++|+++|++|+|||||+++|.+..+.. ...+++|.+.....+.. .+..+.||||||+ ..+..+ ...+
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~-~~~~giT~~i~~~~v~~~~g~~i~~iDTPGh--e~f~~~-------~~~~ 72 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAA-MEAGGITQHIGAFLVSLPSGEKITFLDTPGH--AAFSAM-------RARG 72 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHH-SSSCCBCCCTTSCCBCSSCSSCCBCEECSSS--CCTTTS-------BBSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccc-ccCCceeEEEeEEEEEeCCCCEEEEEECCCh--HHHHHH-------HHHH
Confidence 67899999999999999999999877653 35567776655444444 4568999999995 444333 3345
Q ss_pred hcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChh--HHHHHHHHH----hhcCCCccEEEcccC
Q 014942 193 GINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG--EIAKKLEWY----EKFTDVDEVIPVSAK 266 (415)
Q Consensus 193 ~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~--~~~~~~~~~----~~~~~~~~i~~vSA~ 266 (415)
+..+|++|+|+|++++........+..+.. .+.|+++|+||+|+.... .+......+ .......+++++||+
T Consensus 73 ~~~aD~vILVVDa~dg~~~qt~e~l~~~~~--~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAk 150 (537)
T 3izy_P 73 TQVTDIVILVVAADDGVMKQTVESIQHAKD--AHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSAL 150 (537)
T ss_dssp SBSBSSCEEECBSSSCCCHHHHHHHHHHHT--TTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSS
T ss_pred HccCCEEEEEEECCCCccHHHHHHHHHHHH--cCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECC
Confidence 788999999999999887777666666666 688999999999997422 111111111 111233589999999
Q ss_pred CCCCHHHHHHHHHhhCCC
Q 014942 267 YGHGVEDIRDWILTKLPL 284 (415)
Q Consensus 267 ~g~gv~eL~~~L~~~l~~ 284 (415)
+|.|+++|+++|...++.
T Consensus 151 tG~GI~eLle~I~~l~~~ 168 (537)
T 3izy_P 151 TGENMMALAEATIALAEM 168 (537)
T ss_dssp SSCSSHHHHHHHHHHHTT
T ss_pred CCCCchhHHHHHHHhhhc
Confidence 999999999999987653
No 155
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.79 E-value=1.5e-19 Score=192.04 Aligned_cols=231 Identities=16% Similarity=0.138 Sum_probs=140.7
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCcee-----e------eeC------CCCceEEeEEEEEeCCCeeEEEEeCCCCchh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLS-----I------VTN------KPQTTRHRILGICSGPEYQMILYDTPGIIEK 176 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~-----~------~~~------~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~ 176 (415)
+..+|+|+|++|+|||||+++|+..... . +.+ ..+.|.......+.+.+..++||||||+.+
T Consensus 11 ~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~d- 89 (691)
T 1dar_A 11 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVD- 89 (691)
T ss_dssp GEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTT-
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccc-
Confidence 5569999999999999999999832110 0 011 233444444445566788999999999632
Q ss_pred hhhhHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChh--H-HHHHHHHHh-
Q 014942 177 KIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG--E-IAKKLEWYE- 252 (415)
Q Consensus 177 ~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~--~-~~~~~~~~~- 252 (415)
+ ...+..++..+|++|+|+|++++.......++..+.. .+.|+++|+||+|+.... . +..+.+.+.
T Consensus 90 -f-------~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~--~~~p~ivviNKiD~~~~~~~~~~~~l~~~l~~ 159 (691)
T 1dar_A 90 -F-------TIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEK--YKVPRIAFANKMDKTGADLWLVIRTMQERLGA 159 (691)
T ss_dssp -C-------HHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHH--TTCCEEEEEECTTSTTCCHHHHHHHHHHTTCC
T ss_pred -h-------HHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHH--cCCCEEEEEECCCcccCCHHHHHHHHHHHhCC
Confidence 2 2334556789999999999998887766666665555 689999999999997532 1 111111100
Q ss_pred --------------------------------------------------------------------------------
Q 014942 253 -------------------------------------------------------------------------------- 252 (415)
Q Consensus 253 -------------------------------------------------------------------------------- 252 (415)
T Consensus 160 ~~~~~~~Pi~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~e~dd~l~e~~l~~~~~~~ 239 (691)
T 1dar_A 160 RPVVMQLPIGREDTFSGIIDVLRMKAYTYGNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEGEEPTE 239 (691)
T ss_dssp CEEECEEEESCGGGCCEEEETTTTEEEEECSTTSCCEEEECCCGGGHHHHHHHHHHHHHHHTTTCHHHHHHHHHTCCCCH
T ss_pred CccceeccccCCCcccchhhhhcceeeEeccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHCCCCCCH
Confidence
Q ss_pred -----------hcCCCccEEEcccCCCCCHHHHHHHHHhhCCCCCCCCCCCC------c--cccCCchhHHHHHHHHHHH
Q 014942 253 -----------KFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKFQ------D--IVSEHPERFFVGEIIREKI 313 (415)
Q Consensus 253 -----------~~~~~~~i~~vSA~~g~gv~eL~~~L~~~l~~~~~~~~~~~------~--~~t~~~~~~~i~eiireki 313 (415)
....+.|+++.||++|.|++.|++.|.+.+|.... .+... + .....+...+.+.++ |+
T Consensus 240 ~~~~~~~~~~~~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~lPsP~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~Vf--k~ 316 (691)
T 1dar_A 240 EELVAAIRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLD-IPPIKGTTPEGEVVEIHPDPNGPLAALAF--KI 316 (691)
T ss_dssp HHHHHHHHHHHHTTSCEEEEECBGGGTBSHHHHHHHHHHHSCCTTT-SCCEEEECSSSCEEEECCCTTSCCEEEEE--EE
T ss_pred HHHHHHHHHHHHhCcEeEEEEeecccCcCHHHHHHHHHHhCCChhh-cccccccCCCccccccccCCCCCcEEEEE--EE
Confidence 01123579999999999999999999999986322 11000 0 000011111111111 11
Q ss_pred HhhcCCCCCceEEEEEEEEEecCCCeeEEEEEEEEeeCCceeEEeec
Q 014942 314 FMQYRNEVPYACQVNVVSYKTRPTAKDFIQVEIVVEKNSQKIILIGK 360 (415)
Q Consensus 314 ~~~~~~eipys~~v~i~~~~~~~~~~~~i~~~~~~~r~~q~~iiiG~ 360 (415)
...+..+..+.++|.+|+.+.+..+++......+|.++.+++.|.
T Consensus 317 --~~d~~~G~~~~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~ 361 (691)
T 1dar_A 317 --MADPYVGRLTFIRVYSGTLTSGSYVYNTTKGRKERVARLLRMHAN 361 (691)
T ss_dssp --EEETTTEEEEEEEEEESEEESSCEEEETTTTEEEECCEEEEECSS
T ss_pred --EEcCCCCcEEEEEEeeeeEecCCEEEecCCCcEEEEceEEEEeCC
Confidence 125667778999999999887766554222223344555555444
No 156
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.79 E-value=1.3e-19 Score=181.42 Aligned_cols=201 Identities=16% Similarity=0.128 Sum_probs=131.7
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCC--------ceeee--e------CCCCceEEeEEEEEeCCCeeEEEEeCCCCchhh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQ--------KLSIV--T------NKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~--------~~~~~--~------~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~ 177 (415)
...+|+++|++|+|||||+++|++. .+... . ...+.|.+.....+...+..+.||||||+. .
T Consensus 10 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~--~ 87 (405)
T 2c78_A 10 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHA--D 87 (405)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSG--G
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChH--H
Confidence 4468999999999999999999873 11100 0 123455554445566677899999999963 3
Q ss_pred hhhHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCC-EEEEEeCCCCCCh-hHHH----HHHHHH
Q 014942 178 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKDLIKP-GEIA----KKLEWY 251 (415)
Q Consensus 178 ~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~p-iilV~NK~Dl~~~-~~~~----~~~~~~ 251 (415)
+ ...+..++..+|++|+|+|++++...+...++..+.. .+.| +++|+||+|+... .... +..+.+
T Consensus 88 f-------~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~--~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l 158 (405)
T 2c78_A 88 Y-------IKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQ--VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLL 158 (405)
T ss_dssp G-------HHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHH--TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHH
T ss_pred H-------HHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHH--cCCCEEEEEEECccccCcHHHHHHHHHHHHHHH
Confidence 2 2345556789999999999998876666666666655 5788 8999999999842 2222 122223
Q ss_pred hhcC---CCccEEEcccCCCCC------------------HHHHHHHHHhhCCCCCCCCCCCCccccCCchhHHHHHHHH
Q 014942 252 EKFT---DVDEVIPVSAKYGHG------------------VEDIRDWILTKLPLGPAYYPKFQDIVSEHPERFFVGEIIR 310 (415)
Q Consensus 252 ~~~~---~~~~i~~vSA~~g~g------------------v~eL~~~L~~~l~~~~~~~~~~~~~~t~~~~~~~i~eiir 310 (415)
.... ...+++++||++|.| +.+|++.|.+.+|..+.. .+.|.++.+.++++
T Consensus 159 ~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~p~~~--------~~~p~~~~v~~v~~ 230 (405)
T 2c78_A 159 NQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRD--------VDKPFLMPVEDVFT 230 (405)
T ss_dssp HHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCCCCCC--------CSSCCEEECCEEEE
T ss_pred HHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCCCCCC--------CCCCcEEEEEEEEE
Confidence 2222 135899999999987 889999999988753221 12333332322210
Q ss_pred HHHHhhcCCCCCceEEEEEEEEEecCCCee
Q 014942 311 EKIFMQYRNEVPYACQVNVVSYKTRPTAKD 340 (415)
Q Consensus 311 eki~~~~~~eipys~~v~i~~~~~~~~~~~ 340 (415)
.+..|.....++.+|..+.+..+
T Consensus 231 -------~~~~G~v~~g~v~~G~l~~gd~v 253 (405)
T 2c78_A 231 -------ITGRGTVATGRIERGKVKVGDEV 253 (405)
T ss_dssp -------ETTTEEEEEEECCBSEEETTCEE
T ss_pred -------cCCCceEEEEEEecccccCCCEE
Confidence 13445556667777776655443
No 157
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.79 E-value=7.9e-21 Score=193.48 Aligned_cols=254 Identities=15% Similarity=0.106 Sum_probs=159.6
Q ss_pred CCccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhh
Q 014942 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (415)
Q Consensus 113 ~~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~ 192 (415)
.|+++|+++|++++|||||+++|.+..+. ....++.|.+.....+..++..+.||||||+ ..+..+ +...
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~-~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGh--e~f~~~-------~~~~ 71 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVA-SGEAGGITQHIGAYHVETENGMITFLDTPGH--AAFTSM-------RARG 71 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHS-BTTBCCCCCCSSCCCCCTTSSCCCEECCCTT--TCCTTS-------BCSS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCc-cccCCCeeEeEEEEEEEECCEEEEEEECCCc--HHHHHH-------HHHH
Confidence 37789999999999999999999876543 2333455554433345556778999999995 444433 2344
Q ss_pred hcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChh--HHHHHHHH---H-hhcCCCccEEEcccC
Q 014942 193 GINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG--EIAKKLEW---Y-EKFTDVDEVIPVSAK 266 (415)
Q Consensus 193 ~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~--~~~~~~~~---~-~~~~~~~~i~~vSA~ 266 (415)
+..+|++|+|+|++++...+....+..+.. .+.|+++|+||+|+.... .+...... + ....+..+++++||+
T Consensus 72 ~~~aD~aILVVda~~g~~~qT~e~l~~~~~--~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAk 149 (501)
T 1zo1_I 72 AQATDIVVLVVAADDGVMPQTIEAIQHAKA--AQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAK 149 (501)
T ss_dssp SBSCSSEEEEEETTTBSCTTTHHHHHHHHH--TTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTT
T ss_pred HhhCCEEEEEeecccCccHHHHHHHHHHHh--cCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeee
Confidence 788999999999998775555444455554 678999999999997421 11110000 0 011123589999999
Q ss_pred CCCCHHHHHHHHHhhCCCCCCCCCCCCccccCCchhHHHHHHHHHHHHhhcCCCCCceEEEEEEEEEecCCCeeEEEEEE
Q 014942 267 YGHGVEDIRDWILTKLPLGPAYYPKFQDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTRPTAKDFIQVEI 346 (415)
Q Consensus 267 ~g~gv~eL~~~L~~~l~~~~~~~~~~~~~~t~~~~~~~i~eiireki~~~~~~eipys~~v~i~~~~~~~~~~~~i~~~~ 346 (415)
+|.|+++|+++|.......+...+. +.|....+-+ ....+..|..+.+.+..++.+.+..+.+
T Consensus 150 tG~gI~eLle~I~~~~~~~~~~~~~------~~~~~~~V~e-------~~~d~g~G~v~~~~V~~Gtlk~Gd~v~~---- 212 (501)
T 1zo1_I 150 AGTGIDELLDAILLQAEVLELKAVR------KGMASGAVIE-------SFLDKGRGPVATVLVREGTLHKGDIVLC---- 212 (501)
T ss_dssp TCTTCTTHHHHTTTTCCCSTTTSCC------CSBCEEEEEE-------EEECSSSSEEEEEEEEESBCCTTCEEEE----
T ss_pred eccCcchhhhhhhhhhhhhcccccc------ccccccceEE-------EEEeCCcEEEEEEEEEeeEEecCCEEEE----
Confidence 9999999999998653211111110 1111111100 0124567778888888888877654433
Q ss_pred EEeeCCceeEEeecCChHHHHHHHHHHHHHHHHhCCcEEEEEEEEeCC-Cc
Q 014942 347 VVEKNSQKIILIGKGGKALKLLATAARLDIEDFLQKKVYLEIEVKVKE-NW 396 (415)
Q Consensus 347 ~~~r~~q~~iiiG~~g~~i~~i~~~ar~~l~~~~~~~v~l~l~vk~~~-~w 396 (415)
....++...+.+..|..++++++..+-.+.-+.+.+.....++.+.. .|
T Consensus 213 -g~~~~kVr~i~~~~g~~v~~a~~g~~V~i~gl~~~~~~Gd~~~~~~~~~~ 262 (501)
T 1zo1_I 213 -GFEYGRVRAMRNELGQEVLEAGPSIPVEILGLSGVPAAGDEVTVVRDEKK 262 (501)
T ss_dssp -EBSSCEEEEECCTTTTSEEEECCSSCSSSEEECSCCCTTEEEEEECSSCT
T ss_pred -ccceeEEEEEEecCCCcCcEeccCCcEEEeCCCCCCCCCCEEEecCCHHH
Confidence 34556777777777777776666555444433344455566666643 44
No 158
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.78 E-value=8e-19 Score=186.68 Aligned_cols=236 Identities=15% Similarity=0.094 Sum_probs=147.1
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCce--e---------eeeC------CCCceEEeEEEEEeCCC-------eeEEEEe
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKL--S---------IVTN------KPQTTRHRILGICSGPE-------YQMILYD 169 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~--~---------~~~~------~~~tt~~~~~~~~~~~~-------~~l~liD 169 (415)
+..+|+|+|++|+|||||+++|+.... . .+.+ ..+.|.......+.+.+ ..++|||
T Consensus 9 ~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liD 88 (704)
T 2rdo_7 9 RYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIID 88 (704)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEe
Confidence 556899999999999999999974321 0 0111 22334333333344444 7999999
Q ss_pred CCCCchhhhhhHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChh--H-HHH
Q 014942 170 TPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG--E-IAK 246 (415)
Q Consensus 170 tpG~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~--~-~~~ 246 (415)
|||+. .+ ...+..+++.+|++|+|+|++++.......++..... .+.|+++|+||+|+.... . +..
T Consensus 89 TPG~~--df-------~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~--~~ip~ilviNKiD~~~~~~~~~~~~ 157 (704)
T 2rdo_7 89 TPGHV--DF-------TIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANK--YKVPRIAFVNKMDRMGANFLKVVNQ 157 (704)
T ss_pred CCCcc--ch-------HHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHH--cCCCEEEEEeCCCcccccHHHHHHH
Confidence 99963 22 2335566789999999999998877666666665555 689999999999986431 1 111
Q ss_pred HHHHHhh-------------------------------------------------------------------------
Q 014942 247 KLEWYEK------------------------------------------------------------------------- 253 (415)
Q Consensus 247 ~~~~~~~------------------------------------------------------------------------- 253 (415)
+...+..
T Consensus 158 l~~~l~~~~~~~~~Pi~~~~~f~g~~dl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~ae~dd~l~e~~ 237 (704)
T 2rdo_7 158 IKTRLGANPVPLQLAIGAEEHFTGVVDLVKMKAINWNDADQGVTFEYEDIPADMVELANEWHQNLIESAAEASEELMEKY 237 (704)
T ss_pred HHHHhCCCceeEEccccccccccceeehhhhhhhcccCccCCcceEEecCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 1111000
Q ss_pred --------------------cCCCccEEEcccCCCCCHHHHHHHHHhhCCCCCCCCCCCC------c----cccCCchhH
Q 014942 254 --------------------FTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKFQ------D----IVSEHPERF 303 (415)
Q Consensus 254 --------------------~~~~~~i~~vSA~~g~gv~eL~~~L~~~l~~~~~~~~~~~------~----~~t~~~~~~ 303 (415)
...+.|+++.||++|.|++.|++.|.+.+|.... .+... + .....+...
T Consensus 238 l~~~~l~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~lPsP~~-~~~~~~~~~~~~~~~~~~~~~~~~p 316 (704)
T 2rdo_7 238 LGGEELTEAEIKGALRQRVLNNEIILVTCGSAFKNKGVQAMLDAVIDYLPSPVD-VPAINGILDDGKDTPAERHASDDEP 316 (704)
T ss_pred hcCCCCCHHHHHHHHHHHHHhCCeeEEEEeecccCccHHHHHHHHHHHCCChhh-cccccccCCcccccccccccCCCCc
Confidence 0123578999999999999999999999986321 11000 0 000001111
Q ss_pred HHHHHHHHHHHhhcCCCCCceEEEEEEEEEecCCCeeEEEEEEEEeeCCceeEEeecCChHH
Q 014942 304 FVGEIIREKIFMQYRNEVPYACQVNVVSYKTRPTAKDFIQVEIVVEKNSQKIILIGKGGKAL 365 (415)
Q Consensus 304 ~i~eiireki~~~~~~eipys~~v~i~~~~~~~~~~~~i~~~~~~~r~~q~~iiiG~~g~~i 365 (415)
+.+.++ |++ ..+..+..+.++|.+|+.+.+..+++......++.++.+++.|.+...+
T Consensus 317 ~~~~Vf--K~~--~d~~~G~~~~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v 374 (704)
T 2rdo_7 317 FSALAF--KIA--TDPFVGNLTFFRVYSGVVNSGDTVLNSVKAARERFGRIVQMHANKREEI 374 (704)
T ss_pred eEEEEE--EEE--EcCCCceEEEEEEEeeeecCCCEEEeCCCCcEEEeceEEEEeCCCceEc
Confidence 222222 111 2567788899999999998887766544434455666666666544433
No 159
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.78 E-value=3.1e-19 Score=172.84 Aligned_cols=159 Identities=17% Similarity=0.117 Sum_probs=108.5
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCC--eeEEEEeCCCCchhhhhhHhHHHHHHHHh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~l~liDtpG~~~~~~~~l~~~~~~~~~~ 191 (415)
+..+|+++|.+|||||||++++++..+. ....+|+.......+...+ ..+.+|||||. ..+..+ +..
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~--~~~~~~-------~~~ 222 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGL--EDYDRL-------RPL 222 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCCC--CSCCCCSEEEEEEEEEETTEEEEEEEEEECCC--GGGTTT-------GGG
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCCC--cccCCcccceeEEEEEECCEEEEEEEEeCCCc--hhhhHH-------HHH
Confidence 4468999999999999999999987653 4556666665554444444 45669999995 333322 344
Q ss_pred hhcccceEEEEecCCCCCc--hHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHH-------------HHHHHHhhcCC
Q 014942 192 AGINADCIVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-------------KKLEWYEKFTD 256 (415)
Q Consensus 192 ~~~~aD~ii~VvD~~~~~~--~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~-------------~~~~~~~~~~~ 256 (415)
++..+|++++|+|++++.. .....+...+.....+.|+++|+||+|+....... .....+....+
T Consensus 223 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 302 (332)
T 2wkq_A 223 SYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 302 (332)
T ss_dssp GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTT
T ss_pred hccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcC
Confidence 5789999999999987542 22212333333322489999999999986532111 11122222334
Q ss_pred CccEEEcccCCCCCHHHHHHHHHhhCC
Q 014942 257 VDEVIPVSAKYGHGVEDIRDWILTKLP 283 (415)
Q Consensus 257 ~~~i~~vSA~~g~gv~eL~~~L~~~l~ 283 (415)
..++++|||++|.|+++++++|.+.+.
T Consensus 303 ~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 329 (332)
T 2wkq_A 303 AVKYLECSALTQRGLKTVFDEAIRAVL 329 (332)
T ss_dssp CSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CcEEEEecCCCCcCHHHHHHHHHHHHh
Confidence 458999999999999999999998764
No 160
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.78 E-value=2.4e-19 Score=184.69 Aligned_cols=232 Identities=19% Similarity=0.141 Sum_probs=140.9
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceee---------------ee------CCCCceEEeEEEEEeCCCeeEEEEeCCC
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI---------------VT------NKPQTTRHRILGICSGPEYQMILYDTPG 172 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~---------------~~------~~~~tt~~~~~~~~~~~~~~l~liDtpG 172 (415)
+..+|+|+|++|+|||||+++|++....+ +. ...+.|.......+.+.+..+.+|||||
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG 91 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPG 91 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCC
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCC
Confidence 45689999999999999999998632111 00 1222232222334566788999999999
Q ss_pred CchhhhhhHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChhH---HHHHHH
Q 014942 173 IIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE---IAKKLE 249 (415)
Q Consensus 173 ~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~---~~~~~~ 249 (415)
+. .+. ..+..++..+|++|+|+|++++.......++..+.. .+.|+++|+||+|+..... +..+.+
T Consensus 92 ~~--df~-------~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~--~~ipiivviNK~Dl~~~~~~~~~~~i~~ 160 (529)
T 2h5e_A 92 HE--DFS-------EDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRL--RDTPILTFMNKLDRDIRDPMELLDEVEN 160 (529)
T ss_dssp ST--TCC-------HHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTT--TTCCEEEEEECTTSCCSCHHHHHHHHHH
T ss_pred Ch--hHH-------HHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHH--cCCCEEEEEcCcCCccccHHHHHHHHHH
Confidence 63 322 234556899999999999999887777777777666 6899999999999975322 111111
Q ss_pred HHh-----------------------------------------------------------------------------
Q 014942 250 WYE----------------------------------------------------------------------------- 252 (415)
Q Consensus 250 ~~~----------------------------------------------------------------------------- 252 (415)
.+.
T Consensus 161 ~l~~~~~~~~~pi~sa~~~~Gv~dl~~~~~~~~~~~~g~~~~~~~~i~~~~~~~l~e~~~~~~~~~~~e~~~l~~~~~~~ 240 (529)
T 2h5e_A 161 ELKIGCAPITWPIGCGKLFKGVYHLYKDETYLYQSGKGHTIQEVRIVKGLNNPDLDAAVGEDLAQQLRDELELVKGASNE 240 (529)
T ss_dssp HHCCEEEESEEEESCGGGCCEEEETTTTEEEECCTTCCSSCCCCCEECCSSCHHHHHHHCHHHHHHHHHHHHHHHHHSCC
T ss_pred HhCCCccceecceecccCcceeeehhhhhHhhhcccCCCcccccccCCCCCHHHHHHhhCHHHHHHhhcccchhhhhhhh
Confidence 110
Q ss_pred ------hcCCCccEEEcccCCCCCHHHHHHHHHhhCCCCCCCCCCCCccccCCchhHHHHHHHHHHHHhhc-CCCCCceE
Q 014942 253 ------KFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKFQDIVSEHPERFFVGEIIREKIFMQY-RNEVPYAC 325 (415)
Q Consensus 253 ------~~~~~~~i~~vSA~~g~gv~eL~~~L~~~l~~~~~~~~~~~~~~t~~~~~~~i~eiireki~~~~-~~eipys~ 325 (415)
......|+++.||.+|.||+.|++.|.+.+|... ..+.-...+... ...+.+.++ |+.... .+..+..+
T Consensus 241 ~~~~~~~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~~P~P~-~~~~~~~~~~~~-~~~~~~~vf--Ki~~~~d~~~~G~i~ 316 (529)
T 2h5e_A 241 FDKELFLAGEITPVFFGTALGNFGVDHMLDGLVEWAPAPM-PRQTDTRTVEAS-EDKFTGFVF--KIQANMDPKHRDRVA 316 (529)
T ss_dssp CCHHHHHTTSEEEEEECBTTTTBSHHHHHHHHHHHSCSSC-CEEBSSCEECTT-CCSCEEEEE--EECSSCCSSSSCCCE
T ss_pred hhHHHHHhCceeEEEeeecccCCCHHHHHHHHHHhCCCCC-cccccccccCCC-CCCeEEEEE--EEeeccCcCCCceEE
Confidence 0112347899999999999999999999998632 111000000000 001111111 110101 24578889
Q ss_pred EEEEEEEEecCCCeeEEEEEEEEeeCCceeEEeec
Q 014942 326 QVNVVSYKTRPTAKDFIQVEIVVEKNSQKIILIGK 360 (415)
Q Consensus 326 ~v~i~~~~~~~~~~~~i~~~~~~~r~~q~~iiiG~ 360 (415)
.++|.+|+.+.+..+++.......|.++...+.|.
T Consensus 317 ~~RV~sG~l~~g~~v~~~~~~~~~~v~~i~~~~g~ 351 (529)
T 2h5e_A 317 FMRVVSGKYEKGMKLRQVRTAKDVVISDALTFMAG 351 (529)
T ss_dssp EEEEEESCEETTCEEEETTTTEEEECSCEECCCC-
T ss_pred EEEEecCeEcCCCEEEEeeCCCEEEeceeeEEeCC
Confidence 99999999887766554322223344555544444
No 161
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.77 E-value=5.3e-18 Score=169.92 Aligned_cols=211 Identities=16% Similarity=0.117 Sum_probs=126.0
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceee--eeCCCCceEEeEEEE--E-e--------C-------C-----CeeEEEE
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI--VTNKPQTTRHRILGI--C-S--------G-------P-----EYQMILY 168 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~--~~~~~~tt~~~~~~~--~-~--------~-------~-----~~~l~li 168 (415)
...+|+++|++++|||||+++|++..... ....++.|.+..... + . . . ...+.||
T Consensus 9 ~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 88 (410)
T 1kk1_A 9 AEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFI 88 (410)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEE
Confidence 34589999999999999999999754221 112234443221111 1 0 0 0 1689999
Q ss_pred eCCCCchhhhhhHhHHHHHHHHhhhcccceEEEEecCCCCC-chHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHH-
Q 014942 169 DTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP-ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK- 246 (415)
Q Consensus 169 DtpG~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~-~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~- 246 (415)
||||+ .. +...+...+..+|++|+|+|++++. ..+....+..+... ...|+++|+||+|+........
T Consensus 89 DtPGh--~~-------f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~-~~~~iivviNK~Dl~~~~~~~~~ 158 (410)
T 1kk1_A 89 DAPGH--EA-------LMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII-GQKNIIIAQNKIELVDKEKALEN 158 (410)
T ss_dssp ECSSH--HH-------HHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TCCCEEEEEECGGGSCHHHHHHH
T ss_pred ECCCh--HH-------HHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHc-CCCcEEEEEECccCCCHHHHHHH
Confidence 99994 33 3344556678899999999999875 44444433333331 3358999999999987553322
Q ss_pred ---HHHHHhhc-CCCccEEEcccCCCCCHHHHHHHHHhhCCCCCCCCCCCCccccCCchhHHHHHHHHH-HHHhhcCCCC
Q 014942 247 ---KLEWYEKF-TDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKFQDIVSEHPERFFVGEIIRE-KIFMQYRNEV 321 (415)
Q Consensus 247 ---~~~~~~~~-~~~~~i~~vSA~~g~gv~eL~~~L~~~l~~~~~~~~~~~~~~t~~~~~~~i~eiire-ki~~~~~~ei 321 (415)
..+.+... ....+++++||++|.|+++|+++|.+.++...... +.|.++.+...+.- .--..+++..
T Consensus 159 ~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~p~~~~--------~~~~~~~v~~~f~v~~~g~~~~~~~ 230 (410)
T 1kk1_A 159 YRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPTPKRDP--------NKPPKMLVLRSFDVNKPGTPPEKLV 230 (410)
T ss_dssp HHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCCCCCT--------TSCCEEEEEEEECCSCCC----CCC
T ss_pred HHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCCCcccc--------CCCcEEEEEEEEeccCCCccccCCc
Confidence 22222221 13458999999999999999999999887532211 11111111000000 0000123445
Q ss_pred CceEEEEEEEEEecCCCeeEE
Q 014942 322 PYACQVNVVSYKTRPTAKDFI 342 (415)
Q Consensus 322 pys~~v~i~~~~~~~~~~~~i 342 (415)
|..+...+..+..+.+..+.+
T Consensus 231 G~v~~g~v~~G~l~~gd~v~~ 251 (410)
T 1kk1_A 231 GGVLDGSIVQGKLKVGDEIEI 251 (410)
T ss_dssp CCEEEEEEEESCEETTCEEEE
T ss_pred eEEEEEEEEeCeEeeCCEEEE
Confidence 666777888888877765554
No 162
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.77 E-value=2.3e-19 Score=190.60 Aligned_cols=232 Identities=15% Similarity=0.110 Sum_probs=143.5
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceee-----------eeC------CCCceEEeEEEEEeCCCeeEEEEeCCCCchh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI-----------VTN------KPQTTRHRILGICSGPEYQMILYDTPGIIEK 176 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~-----------~~~------~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~ 176 (415)
+..+|+|+|++|+|||||+|+|++..... +.+ .+++|.......+.+.+..++||||||+.+
T Consensus 9 ~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d- 87 (693)
T 2xex_A 9 KTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVD- 87 (693)
T ss_dssp TEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSS-
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcc-
Confidence 55699999999999999999998421110 111 234555444555667788999999999743
Q ss_pred hhhhHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChh---HHHHHHHHHhh
Q 014942 177 KIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG---EIAKKLEWYEK 253 (415)
Q Consensus 177 ~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~---~~~~~~~~~~~ 253 (415)
+. ..+..+++.+|++|+|+|++++.......++..+.. .+.|+++|+||+|+.... .+..+...+..
T Consensus 88 -f~-------~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~--~~~p~ilviNK~Dl~~~~~~~~~~~l~~~l~~ 157 (693)
T 2xex_A 88 -FT-------VEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATT--YGVPRIVFVNKMDKLGANFEYSVSTLHDRLQA 157 (693)
T ss_dssp -CC-------HHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHH--TTCCEEEEEECTTSTTCCHHHHHHHHHHHHCC
T ss_pred -hH-------HHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHH--cCCCEEEEEECCCccccchHHHHHHHHHHhCC
Confidence 22 224556788999999999998887766666666655 689999999999997532 11111111100
Q ss_pred --------------------------------------------------------------------------------
Q 014942 254 -------------------------------------------------------------------------------- 253 (415)
Q Consensus 254 -------------------------------------------------------------------------------- 253 (415)
T Consensus 158 ~~~~~~ipisa~~~~~~l~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~r~~l~e~l~e~dd~l~e~~l~~~~~~~ 237 (693)
T 2xex_A 158 NAAPIQLPIGAEDEFEAIIDLVEMKCFKYTNDLGTEIEEIEIPEDHLDRAEEARASLIEAVAETSDELMEKYLGDEEISV 237 (693)
T ss_dssp CEEESEEEECCGGGCCEEEETTTTEEEECCSSSSCSCEEECCCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHTTCCCCH
T ss_pred CceeEEeecccCCCcceeeeeecceeEEeccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHhcCCCCCH
Confidence
Q ss_pred ------------cCCCccEEEcccCCCCCHHHHHHHHHhhCCCCCCCCCCCC--------c--cccCCchhHHHHHHHHH
Q 014942 254 ------------FTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKFQ--------D--IVSEHPERFFVGEIIRE 311 (415)
Q Consensus 254 ------------~~~~~~i~~vSA~~g~gv~eL~~~L~~~l~~~~~~~~~~~--------~--~~t~~~~~~~i~eiire 311 (415)
...+.|+++.||.+|.|++.|++.|.+.+|.... .+... . .....+...+.+.++
T Consensus 238 ~~~~~~l~~~~~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~lPsP~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~a~Vf-- 314 (693)
T 2xex_A 238 SELKEAIRQATTNVEFYPVLCGTAFKNKGVQLMLDAVIDYLPSPLD-VKPIIGHRASNPEEEVIAKADDSAEFAALAF-- 314 (693)
T ss_dssp HHHHHHHHHHHHTTSCEEEEECBTTTTBSHHHHHHHHHHHSCCGGG-SCCEEEEETTEEEEEEEECSCTTSCCEEEEE--
T ss_pred HHHHHHHHHHHHhCCeeeEEEeecccCcCHHHHHHHHHHHCCCchh-cccccccCCCccccceeecCCCCCceEEEEE--
Confidence 0122479999999999999999999999986321 11000 0 000001111111111
Q ss_pred HHHhhcCCCCCceEEEEEEEEEecCCCeeEEEEEEEEeeCCceeEEeecC
Q 014942 312 KIFMQYRNEVPYACQVNVVSYKTRPTAKDFIQVEIVVEKNSQKIILIGKG 361 (415)
Q Consensus 312 ki~~~~~~eipys~~v~i~~~~~~~~~~~~i~~~~~~~r~~q~~iiiG~~ 361 (415)
|+ ...+..+..+.++|.+|+.+.+..+++......+|.++.+++.|.+
T Consensus 315 K~--~~d~~~g~~~~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~ 362 (693)
T 2xex_A 315 KV--MTDPYVGKLTFFRVYSGTMTSGSYVKNSTKGKRERVGRLLQMHANS 362 (693)
T ss_dssp EE--EEETTTEEEEEEEEEESEEETTEEEEETTTTEEEEECCEEEECSSC
T ss_pred Ee--eecCCCceEEEEEEEeeeEecCCEEEecCCCceEEeceEEEEeCCC
Confidence 11 1256778889999999998877665543222334555555555543
No 163
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.76 E-value=2.9e-18 Score=159.00 Aligned_cols=168 Identities=15% Similarity=0.232 Sum_probs=106.8
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCCC--CceEEeEEEEEeCCCeeEEEEeCCCCchhhh--hhHhHHHHHHH
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKP--QTTRHRILGICSGPEYQMILYDTPGIIEKKI--HMLDSMMMKNV 189 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~--~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~--~~l~~~~~~~~ 189 (415)
+.++|+|+|.+|||||||+|+|++..+. .+..+ ++|.......+...+..+.+|||||+..... ..+...+...+
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~~~-~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~ 106 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRKVF-HSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIRCI 106 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSCCS-CC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCCcC-ccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHHHH
Confidence 5569999999999999999999998874 33333 5677766667777888999999999854221 12233445555
Q ss_pred HhhhcccceEEEEecCCCCCchHHHHHHHHhccc--CCCCCEEEEEeCCCCCChhHHH--------HHHHHHhhcCCCcc
Q 014942 190 RSAGINADCIVVLVDACKAPERIDEILEEGVGDH--KDKLPILLVLNKKDLIKPGEIA--------KKLEWYEKFTDVDE 259 (415)
Q Consensus 190 ~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~--~~~~piilV~NK~Dl~~~~~~~--------~~~~~~~~~~~~~~ 259 (415)
..++..+|++|+|+|+++.......++..+...+ ....|+++|+||+|+.....+. ........... .
T Consensus 107 ~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~~--~ 184 (239)
T 3lxx_A 107 LLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFGD--R 184 (239)
T ss_dssp HHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHHHHSS--S
T ss_pred HhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcCC--E
Confidence 6667889999999998754443333443333211 0346999999999997654433 12222233322 4
Q ss_pred EEEcccCC-----CCCHHHHHHHHHhhCCC
Q 014942 260 VIPVSAKY-----GHGVEDIRDWILTKLPL 284 (415)
Q Consensus 260 i~~vSA~~-----g~gv~eL~~~L~~~l~~ 284 (415)
++.+++.. +.|+.+|++.+.+.+..
T Consensus 185 ~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 185 YCALNNKATGAEQEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp EEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence 56665553 37899999999887754
No 164
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.76 E-value=9.6e-18 Score=167.91 Aligned_cols=162 Identities=17% Similarity=0.190 Sum_probs=99.9
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeee--eCCCCceEEeEEE---EEe--------C----C--------CeeEEEE
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIV--TNKPQTTRHRILG---ICS--------G----P--------EYQMILY 168 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~--~~~~~tt~~~~~~---~~~--------~----~--------~~~l~li 168 (415)
...+|+++|++++|||||+++|++...... ...++.|.+.... ... . . ...+.||
T Consensus 7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 86 (408)
T 1s0u_A 7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFV 86 (408)
T ss_dssp CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEE
Confidence 446899999999999999999997542211 1223334321111 100 0 1 1689999
Q ss_pred eCCCCchhhhhhHhHHHHHHHHhhhcccceEEEEecCCCCC-chHHHHHHHHhcccCCCCCEEEEEeCCCCCChhH----
Q 014942 169 DTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP-ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE---- 243 (415)
Q Consensus 169 DtpG~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~-~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~---- 243 (415)
||||+ .. +...+...+..+|++|+|+|++++. ..+.......+... ...|+++|+||+|+.....
T Consensus 87 DtPGh--~~-------f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l-~~~~iivv~NK~Dl~~~~~~~~~ 156 (408)
T 1s0u_A 87 DSPGH--ET-------LMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEIL-GIDKIIIVQNKIDLVDEKQAEEN 156 (408)
T ss_dssp ECSSH--HH-------HHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT-TCCCEEEEEECTTSSCTTTTTTH
T ss_pred ECCCH--HH-------HHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHc-CCCeEEEEEEccCCCCHHHHHHH
Confidence 99994 33 3344556678899999999999875 44444333333331 2358999999999986432
Q ss_pred HHHHHHHHhhc-CCCccEEEcccCCCCCHHHHHHHHHhhCCCC
Q 014942 244 IAKKLEWYEKF-TDVDEVIPVSAKYGHGVEDIRDWILTKLPLG 285 (415)
Q Consensus 244 ~~~~~~~~~~~-~~~~~i~~vSA~~g~gv~eL~~~L~~~l~~~ 285 (415)
..+..+.+... ....+++++||++|.|+++|+++|.+.++..
T Consensus 157 ~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~~ 199 (408)
T 1s0u_A 157 YEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPTP 199 (408)
T ss_dssp HHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCCC
Confidence 23333333321 1345899999999999999999999988753
No 165
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.76 E-value=1.7e-17 Score=149.94 Aligned_cols=167 Identities=23% Similarity=0.233 Sum_probs=103.3
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCc-eeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhh-----hhHhHHHHH
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQK-LSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI-----HMLDSMMMK 187 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~-~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~-----~~l~~~~~~ 187 (415)
+..+|+++|++|||||||+|+|++.. ...+.+.+++|.......+. + .+.+|||||+..... ..+.. ...
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~--~-~~~l~Dt~G~~~~~~~~~~~~~~~~-~~~ 100 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVA--D-GKRLVDLPGYGYAEVPEEMKRKWQR-ALG 100 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEE--T-TEEEEECCCCC------CCHHHHHH-HHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEec--C-CEEEEECcCCcccccCHHHHHHHHH-HHH
Confidence 45589999999999999999999987 34445667776543222222 2 788999999742110 01111 111
Q ss_pred HHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChhH----HHHHHHHHhhcCCCccEEEc
Q 014942 188 NVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE----IAKKLEWYEKFTDVDEVIPV 263 (415)
Q Consensus 188 ~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~----~~~~~~~~~~~~~~~~i~~v 263 (415)
.+......++++++|+|++.+.......+...+.. .+.|+++|+||+|+..... +......+........++++
T Consensus 101 ~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~--~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (210)
T 1pui_A 101 EYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVD--SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETF 178 (210)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH--TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEEC
T ss_pred HHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHH--cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEE
Confidence 22222367899999999988765544445454444 6789999999999987532 22233333333334578999
Q ss_pred ccCCCCCHHHHHHHHHhhCCCCC
Q 014942 264 SAKYGHGVEDIRDWILTKLPLGP 286 (415)
Q Consensus 264 SA~~g~gv~eL~~~L~~~l~~~~ 286 (415)
||+++.|+++++++|.+.++.++
T Consensus 179 Sal~~~~~~~l~~~l~~~~~~~~ 201 (210)
T 1pui_A 179 SSLKKQGVDKLRQKLDTWFSEMQ 201 (210)
T ss_dssp BTTTTBSHHHHHHHHHHHHC---
T ss_pred eecCCCCHHHHHHHHHHHHhhcc
Confidence 99999999999999999887654
No 166
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.76 E-value=6.5e-18 Score=168.53 Aligned_cols=201 Identities=16% Similarity=0.081 Sum_probs=130.0
Q ss_pred ccEEEEEecCCCCHHHHHHHHhCCce-------ee--------eeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhh
Q 014942 115 SGYVAVLGKPNVGKSTLANQMIGQKL-------SI--------VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIH 179 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~~~~~-------~~--------~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~ 179 (415)
..+|+++|++|+|||||+++|++... .. .....+.|.+.....+...+..+.||||||+ ..
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~--~~-- 78 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGH--AD-- 78 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSH--HH--
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCCh--HH--
Confidence 35899999999999999999986410 00 0113455655544456667789999999994 33
Q ss_pred hHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCC-EEEEEeCCCCCC-hhHHH----HHHHHHhh
Q 014942 180 MLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKDLIK-PGEIA----KKLEWYEK 253 (415)
Q Consensus 180 ~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~p-iilV~NK~Dl~~-~~~~~----~~~~~~~~ 253 (415)
+...+..++..+|++|+|+|++++...+....+..+.. .+.| +++|+||+|+.. ..... +..+.+..
T Consensus 79 -----f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~--~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~ 151 (397)
T 1d2e_A 79 -----YVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQ--IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTE 151 (397)
T ss_dssp -----HHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHH--TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHH--cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHH
Confidence 33445667899999999999998876666555555555 5788 689999999985 22221 22223322
Q ss_pred cC---CCccEEEcccCCCCC----------HHHHHHHHHhhCCCCCCCCCCCCccccCCchhHHHHHHHHHHHHhhcCCC
Q 014942 254 FT---DVDEVIPVSAKYGHG----------VEDIRDWILTKLPLGPAYYPKFQDIVSEHPERFFVGEIIREKIFMQYRNE 320 (415)
Q Consensus 254 ~~---~~~~i~~vSA~~g~g----------v~eL~~~L~~~l~~~~~~~~~~~~~~t~~~~~~~i~eiireki~~~~~~e 320 (415)
.. ...+++++||++|.| +.+|++.|.+.++..... .+.|.++.+..+. ..+.
T Consensus 152 ~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~p~~~--------~~~p~~~~v~~v~-------~~~~ 216 (397)
T 1d2e_A 152 FGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPVPTRD--------LEKPFLLPVESVY-------SIPG 216 (397)
T ss_dssp TTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCCCCCC--------TTSCCEEECCEEE-------EETT
T ss_pred cCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCCCCCC--------CCCcEEEEEEEEE-------EeCC
Confidence 21 135899999999764 899999999988752211 1122222121111 0134
Q ss_pred CCceEEEEEEEEEecCCCeeE
Q 014942 321 VPYACQVNVVSYKTRPTAKDF 341 (415)
Q Consensus 321 ipys~~v~i~~~~~~~~~~~~ 341 (415)
.|......+.+|..+.+..+.
T Consensus 217 ~G~v~~g~v~~G~l~~gd~v~ 237 (397)
T 1d2e_A 217 RGTVVTGTLERGILKKGDECE 237 (397)
T ss_dssp TEEEEEEECCBSEEETTCEEE
T ss_pred ceEEEEEEEeeceEeCCCEEE
Confidence 555566677777776665444
No 167
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.75 E-value=2.1e-18 Score=179.68 Aligned_cols=207 Identities=18% Similarity=0.199 Sum_probs=128.6
Q ss_pred CCccEEEEEecCCCCHHHHHHHHhCCceeeeeCCC-CceEEeEEEEEe------------------CCCeeEEEEeCCCC
Q 014942 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKP-QTTRHRILGICS------------------GPEYQMILYDTPGI 173 (415)
Q Consensus 113 ~~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~-~tt~~~~~~~~~------------------~~~~~l~liDtpG~ 173 (415)
.|.++|+|+|++|+|||||+++|++..+.. ..+ +.|.+.....+. .....+.||||||+
T Consensus 3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~--~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGh 80 (594)
T 1g7s_A 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVAS--REAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGH 80 (594)
T ss_dssp ECCCEEEEECSTTSSHHHHHHHHHHHHHSC--C----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTT
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhcccCcc--ccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCc
Confidence 367899999999999999999999765431 111 222221111111 11225999999995
Q ss_pred chhhhhhHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChh-----------
Q 014942 174 IEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG----------- 242 (415)
Q Consensus 174 ~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~----------- 242 (415)
..+..+ ...++..+|++|+|+|++++........+..+.. .+.|+++|+||+|+....
T Consensus 81 --e~F~~~-------~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~--~~vPiIVViNKiDl~~~~~~~~~~~~~e~ 149 (594)
T 1g7s_A 81 --EAFTTL-------RKRGGALADLAILIVDINEGFKPQTQEALNILRM--YRTPFVVAANKIDRIHGWRVHEGRPFMET 149 (594)
T ss_dssp --SCCTTS-------BCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHH--TTCCEEEEEECGGGSTTCCCCTTCCHHHH
T ss_pred --HHHHHH-------HHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHH--cCCeEEEEecccccccccccccCCchHHH
Confidence 444433 2234788999999999999887777666666666 789999999999996421
Q ss_pred ------HH--------HHHHHHHhhc-------------CCCccEEEcccCCCCCHHHHHHHHHhhCCCCCCCCCCCCcc
Q 014942 243 ------EI--------AKKLEWYEKF-------------TDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKFQDI 295 (415)
Q Consensus 243 ------~~--------~~~~~~~~~~-------------~~~~~i~~vSA~~g~gv~eL~~~L~~~l~~~~~~~~~~~~~ 295 (415)
.+ .+....+... ....+++++||++|.|+++|+++|...++.... +.+ ..
T Consensus 150 sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~~~~--~~l-~~ 226 (594)
T 1g7s_A 150 FSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYLR--EQL-KI 226 (594)
T ss_dssp HTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHHCS--GGG-EE
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhccccch--hhh-cc
Confidence 11 0111122111 234589999999999999999999987652110 000 00
Q ss_pred ccCCchhHHHHHHHHHHHHhhcCCCCCceEEEEEEEEEecCCCeeEE
Q 014942 296 VSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTRPTAKDFI 342 (415)
Q Consensus 296 ~t~~~~~~~i~eiireki~~~~~~eipys~~v~i~~~~~~~~~~~~i 342 (415)
-.+.|.+..+-++ ...+..|..+.+++.+|+.+.+..+.+
T Consensus 227 ~~~~p~~~~V~~~-------~~d~g~G~v~~~rV~~G~Lk~Gd~v~~ 266 (594)
T 1g7s_A 227 EEDSPARGTILEV-------KEETGLGMTIDAVIYDGILRKDDTIAM 266 (594)
T ss_dssp CTTSBCEEEEEEE-------EEETTEEEEEEEEEEESEEETTCEEEE
T ss_pred ccCCCceeEEEEE-------EEeCCcEEEEEEEEeeCEEeeCCEEEE
Confidence 0112221111110 124556777888999999887755443
No 168
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.74 E-value=2.6e-18 Score=177.90 Aligned_cols=160 Identities=21% Similarity=0.274 Sum_probs=99.8
Q ss_pred CCccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEE-------E----eCCCeeEEEEeCCCCchhhhhhH
Q 014942 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI-------C----SGPEYQMILYDTPGIIEKKIHML 181 (415)
Q Consensus 113 ~~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~-------~----~~~~~~l~liDtpG~~~~~~~~l 181 (415)
.+..+|+++|.+|||||||+|+|++..+. .....|........ + ...+..+.+|||||. +.+..+
T Consensus 39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~~~--~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~--e~~~~~ 114 (535)
T 3dpu_A 39 LQEIKVHLIGDGMAGKTSLLKQLIGETFD--PKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQ--EIMHAS 114 (535)
T ss_dssp CCEEEEEEESSSCSSHHHHHHHHHC-------------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSC--CTTTTT
T ss_pred ccceEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcH--HHHHHH
Confidence 45679999999999999999999998764 22222221111111 1 123578999999994 445544
Q ss_pred hHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHH--HHHHHHHhhcCCCcc
Q 014942 182 DSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI--AKKLEWYEKFTDVDE 259 (415)
Q Consensus 182 ~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~ 259 (415)
...+ ++.+|++|+|+|+++. .....|+. .+.....+.|+++|+||+|+.....+ ......+... + .+
T Consensus 115 ~~~~-------l~~~d~ii~V~D~s~~-~~~~~~~~-~l~~~~~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~-~-~~ 183 (535)
T 3dpu_A 115 HQFF-------MTRSSVYMLLLDSRTD-SNKHYWLR-HIEKYGGKSPVIVVMNKIDENPSYNIEQKKINERFPAI-E-NR 183 (535)
T ss_dssp CHHH-------HHSSEEEEEEECGGGG-GGHHHHHH-HHHHHSSSCCEEEEECCTTTCTTCCCCHHHHHHHCGGG-T-TC
T ss_pred HHHH-------ccCCcEEEEEEeCCCc-hhHHHHHH-HHHHhCCCCCEEEEEECCCcccccccCHHHHHHHHHhc-C-Cc
Confidence 4333 6789999999999764 34444443 33333356999999999999754332 2222322222 2 36
Q ss_pred EEEcccCCCCCHHHHHHHHHhhCCCCCC
Q 014942 260 VIPVSAKYGHGVEDIRDWILTKLPLGPA 287 (415)
Q Consensus 260 i~~vSA~~g~gv~eL~~~L~~~l~~~~~ 287 (415)
++++||++|.|+++|+++|.+.+...+.
T Consensus 184 ~~~vSA~~g~gi~eL~~~l~~~~~~~~~ 211 (535)
T 3dpu_A 184 FHRISCKNGDGVESIAKSLKSAVLHPDS 211 (535)
T ss_dssp EEECCC-----CTTHHHHHHHHHTCTTS
T ss_pred eEEEecCcccCHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999887554
No 169
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.74 E-value=1.4e-18 Score=175.46 Aligned_cols=149 Identities=21% Similarity=0.263 Sum_probs=95.2
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeee------------------------------eCCCCceEEeEEEEEeCCCe
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIV------------------------------TNKPQTTRHRILGICSGPEY 163 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~------------------------------~~~~~tt~~~~~~~~~~~~~ 163 (415)
+..+|+++|++|+|||||+++|++...... ....++|.+.....+...+.
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~~ 84 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKY 84 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSC
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCCe
Confidence 446899999999999999999986421100 01345666655556677788
Q ss_pred eEEEEeCCCCchhhhhhHhHHHHHHHHhhhcccceEEEEecCCCC-------CchHHHHHHHHhcccCCCC-CEEEEEeC
Q 014942 164 QMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKA-------PERIDEILEEGVGDHKDKL-PILLVLNK 235 (415)
Q Consensus 164 ~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~-------~~~~~~~l~~~l~~~~~~~-piilV~NK 235 (415)
.+.||||||+. . +...+..++..+|++|+|+|++++ ...+.......+.. .+. |+++|+||
T Consensus 85 ~~~iiDtpG~~--~-------f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~--~~~~~iivviNK 153 (435)
T 1jny_A 85 FFTIIDAPGHR--D-------FVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKT--MGLDQLIVAVNK 153 (435)
T ss_dssp EEEECCCSSST--T-------HHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHH--TTCTTCEEEEEC
T ss_pred EEEEEECCCcH--H-------HHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHH--cCCCeEEEEEEc
Confidence 99999999963 3 233456678999999999999986 43344444444443 344 69999999
Q ss_pred CCCCCh----hHHH----HHHHHHhhcC---CCccEEEcccCCCCCHHH
Q 014942 236 KDLIKP----GEIA----KKLEWYEKFT---DVDEVIPVSAKYGHGVED 273 (415)
Q Consensus 236 ~Dl~~~----~~~~----~~~~~~~~~~---~~~~i~~vSA~~g~gv~e 273 (415)
+|+... .... +..+.+.... ...+++++||++|.|+.+
T Consensus 154 ~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e 202 (435)
T 1jny_A 154 MDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH 202 (435)
T ss_dssp GGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred ccCCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCccccc
Confidence 999862 2211 2222222221 125799999999999973
No 170
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.73 E-value=2.4e-17 Score=166.31 Aligned_cols=148 Identities=22% Similarity=0.223 Sum_probs=97.7
Q ss_pred ccEEEEEecCCCCHHHHHHHHhCCceee----------eeCCCCc----------------------eEEeEEEEEeCCC
Q 014942 115 SGYVAVLGKPNVGKSTLANQMIGQKLSI----------VTNKPQT----------------------TRHRILGICSGPE 162 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~~~~~~~----------~~~~~~t----------------------t~~~~~~~~~~~~ 162 (415)
..+|+++|++|+|||||+|+|++..... .+..+++ |.+.....+...+
T Consensus 24 ~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~~~ 103 (434)
T 1zun_B 24 MLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTAK 103 (434)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECSS
T ss_pred ceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeecCC
Confidence 3589999999999999999998654211 1112233 3333333456677
Q ss_pred eeEEEEeCCCCchhhhhhHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCC-CEEEEEeCCCCCCh
Q 014942 163 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKL-PILLVLNKKDLIKP 241 (415)
Q Consensus 163 ~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~-piilV~NK~Dl~~~ 241 (415)
..+.||||||+ ..+. ..+..++..+|++|+|+|++++...+.......+.. .+. |+++|+||+|+...
T Consensus 104 ~~~~iiDtpGh--~~f~-------~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~--~~~~~iIvviNK~Dl~~~ 172 (434)
T 1zun_B 104 RKFIIADTPGH--EQYT-------RNMATGASTCDLAIILVDARYGVQTQTRRHSYIASL--LGIKHIVVAINKMDLNGF 172 (434)
T ss_dssp EEEEEEECCCS--GGGH-------HHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHH--TTCCEEEEEEECTTTTTS
T ss_pred ceEEEEECCCh--HHHH-------HHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHH--cCCCeEEEEEEcCcCCcc
Confidence 89999999995 3332 234455789999999999998876665555554444 344 59999999999862
Q ss_pred --hHHHHH---H-HHHhhcC---CCccEEEcccCCCCCHHH
Q 014942 242 --GEIAKK---L-EWYEKFT---DVDEVIPVSAKYGHGVED 273 (415)
Q Consensus 242 --~~~~~~---~-~~~~~~~---~~~~i~~vSA~~g~gv~e 273 (415)
...... . ..+.... ...+++++||++|.|+++
T Consensus 173 ~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~ 213 (434)
T 1zun_B 173 DERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVN 213 (434)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSS
T ss_pred cHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCccc
Confidence 222222 2 2222222 235899999999999987
No 171
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.73 E-value=5.1e-19 Score=173.44 Aligned_cols=188 Identities=21% Similarity=0.308 Sum_probs=116.4
Q ss_pred CccEEEEEecCCCCHHHHHHHHhC------CceeeeeCCCCceEE--------------------eEE---------EE-
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIG------QKLSIVTNKPQTTRH--------------------RIL---------GI- 157 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~------~~~~~~~~~~~tt~~--------------------~~~---------~~- 157 (415)
..+.|+|+|+||||||||+|+|++ .++......|++... .+. +.
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~t 152 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGVT 152 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------C
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccch
Confidence 356899999999999999999985 344444444433210 000 00
Q ss_pred ---------EeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCC
Q 014942 158 ---------CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP 228 (415)
Q Consensus 158 ---------~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~p 228 (415)
+...+..+.|+||||+.+.. ......+|++++|+|++.+... ..+... . ...|
T Consensus 153 r~~~~~~~~~~~~~~~~iliDT~Gi~~~~------------~~l~~~~d~vl~V~d~~~~~~~--~~i~~~--i--l~~~ 214 (349)
T 2www_A 153 RTTNEAILLCEGAGYDIILIETVGVGQSE------------FAVADMVDMFVLLLPPAGGDEL--QGIKRG--I--IEMA 214 (349)
T ss_dssp TTHHHHHHHHHHTTCSEEEEECCCC--CH------------HHHHTTCSEEEEEECCC------------------CCSC
T ss_pred HHHHHHHHhhccCCCCEEEEECCCcchhh------------hhHHhhCCEEEEEEcCCcchhH--HHhHHH--H--HhcC
Confidence 01356789999999974321 1124689999999998765321 111111 1 2468
Q ss_pred EEEEEeCCCCCChhHHHHHHHHH----hhcC-----CCccEEEcccCCCCCHHHHHHHHHhhCCCCCCCCCCCCccccCC
Q 014942 229 ILLVLNKKDLIKPGEIAKKLEWY----EKFT-----DVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKFQDIVSEH 299 (415)
Q Consensus 229 iilV~NK~Dl~~~~~~~~~~~~~----~~~~-----~~~~i~~vSA~~g~gv~eL~~~L~~~l~~~~~~~~~~~~~~t~~ 299 (415)
.++|+||+|+............+ .... ...+++++||++|.|+++|+++|.+.++. .++. ..+++.
T Consensus 215 ~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~~---~~~~--~~~~~~ 289 (349)
T 2www_A 215 DLVAVTKSDGDLIVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDL---MLAS--GELTAK 289 (349)
T ss_dssp SEEEECCCSGGGHHHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHHH---HHHH--SHHHHH
T ss_pred CEEEEeeecCCCchhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHHH---HhhC--chHHHH
Confidence 89999999997543322212222 1111 13478999999999999999999987743 2333 444443
Q ss_pred ---chhHHHHHHHHHHHHhhcCCCCCce
Q 014942 300 ---PERFFVGEIIREKIFMQYRNEVPYA 324 (415)
Q Consensus 300 ---~~~~~i~eiireki~~~~~~eipys 324 (415)
..++++.++++++++..+..++|+.
T Consensus 290 R~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (349)
T 2www_A 290 RRKQQKVWMWNLIQESVLEHFRTHPTVR 317 (349)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcchh
Confidence 5667889999999998777777653
No 172
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.73 E-value=1.3e-18 Score=163.34 Aligned_cols=168 Identities=15% Similarity=0.141 Sum_probs=99.6
Q ss_pred CCCccEEEEEecC---------CCCHHHHHHHHhCC---ceeeeeCCCCce--EEeEE----------------EEEeCC
Q 014942 112 NHKSGYVAVLGKP---------NVGKSTLANQMIGQ---KLSIVTNKPQTT--RHRIL----------------GICSGP 161 (415)
Q Consensus 112 ~~~~~~V~ivG~~---------~vGKSSLln~l~~~---~~~~~~~~~~tt--~~~~~----------------~~~~~~ 161 (415)
..+..+|+|+|.+ |||||||+|+|++. .+. .....+| .+... ..+...
T Consensus 16 ~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~--~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 93 (255)
T 3c5h_A 16 FQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFH--LDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCV 93 (255)
T ss_dssp CCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCC--SCCCCEECHHHHTSTTTTTCSEEEEEEEC-------
T ss_pred CCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccc--cccCCcccccccceeEeecccccccccccccccCCc
Confidence 3456799999999 99999999999984 332 2222222 11000 001234
Q ss_pred CeeEEEEe------CCCCchhhhhhHhHHHHH--------HHHhhhc---------------------ccceEEEEecCC
Q 014942 162 EYQMILYD------TPGIIEKKIHMLDSMMMK--------NVRSAGI---------------------NADCIVVLVDAC 206 (415)
Q Consensus 162 ~~~l~liD------tpG~~~~~~~~l~~~~~~--------~~~~~~~---------------------~aD~ii~VvD~~ 206 (415)
...+.+|| |||........+...+.. ....++. +||++|+|+|++
T Consensus 94 ~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t 173 (255)
T 3c5h_A 94 ECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVS 173 (255)
T ss_dssp --CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECB
T ss_pred EEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECC
Confidence 45788887 666532221111111100 0111122 699999999998
Q ss_pred CC--C--chHHHHHHHHhcc-cCCCCCEEEEEeCCCCCChhHHHHHHHHHhhcCCCccEEEcccCCCCCHHHHHHHHHhh
Q 014942 207 KA--P--ERIDEILEEGVGD-HKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTK 281 (415)
Q Consensus 207 ~~--~--~~~~~~l~~~l~~-~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gv~eL~~~L~~~ 281 (415)
++ . .....|+..+... ...+.|+++|+||+|+.....+......... ....+++++||++|.|+++++++|.+.
T Consensus 174 ~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~-~~~~~~~e~SAk~g~gv~elf~~l~~~ 252 (255)
T 3c5h_A 174 RGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFALS-KKNLQVVETSARSNVNVDLAFSTLVQL 252 (255)
T ss_dssp C----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHHHHHHT-SSSCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHHHHHHh-cCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 75 2 3344454444332 1257999999999999876655433333332 223589999999999999999999876
Q ss_pred C
Q 014942 282 L 282 (415)
Q Consensus 282 l 282 (415)
+
T Consensus 253 l 253 (255)
T 3c5h_A 253 I 253 (255)
T ss_dssp H
T ss_pred h
Confidence 4
No 173
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.73 E-value=1.4e-18 Score=170.74 Aligned_cols=184 Identities=19% Similarity=0.231 Sum_probs=115.8
Q ss_pred CccEEEEEecCCCCHHHHHHHHh------CCceeeeeCCCCceEEe-------E----------EEE-------------
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMI------GQKLSIVTNKPQTTRHR-------I----------LGI------------- 157 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~------~~~~~~~~~~~~tt~~~-------~----------~~~------------- 157 (415)
+.+.|+|+|.||||||||+++|. |.++..+...|+++... . ..+
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 157 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGGVT 157 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccchh
Confidence 45689999999999999999985 44555554444443200 0 000
Q ss_pred ---------EeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCC
Q 014942 158 ---------CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP 228 (415)
Q Consensus 158 ---------~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~p 228 (415)
+...+..++||||||+.+.. ...+..+|++|+|+|+...... ..+ .......|
T Consensus 158 ~~t~d~i~~~~~~~~~~iiiDTpGi~~~~------------~~~~~~aD~vl~V~d~~~~~~~--~~l----~~~~~~~p 219 (355)
T 3p32_A 158 RATRETVVLLEAAGFDVILIETVGVGQSE------------VAVANMVDTFVLLTLARTGDQL--QGI----KKGVLELA 219 (355)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECSCSSHH------------HHHHTTCSEEEEEEESSTTCTT--TTC----CTTSGGGC
T ss_pred HHHHHHHHHHhhCCCCEEEEeCCCCCcHH------------HHHHHhCCEEEEEECCCCCccH--HHH----HHhHhhcC
Confidence 12246789999999974321 1124889999999998654322 111 11113469
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHhhc----C----C-CccEEEcccCCCCCHHHHHHHHHhhCCC--CCCCCCCCCcccc
Q 014942 229 ILLVLNKKDLIKPGEIAKKLEWYEKF----T----D-VDEVIPVSAKYGHGVEDIRDWILTKLPL--GPAYYPKFQDIVS 297 (415)
Q Consensus 229 iilV~NK~Dl~~~~~~~~~~~~~~~~----~----~-~~~i~~vSA~~g~gv~eL~~~L~~~l~~--~~~~~~~~~~~~t 297 (415)
+++|+||+|+............+... . . ..+++++||++|.|+++|+++|.+.++. .+..++ ....
T Consensus 220 ~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~~~~~~~~~---~~r~ 296 (355)
T 3p32_A 220 DIVVVNKADGEHHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQVLTGAGEFD---ARRR 296 (355)
T ss_dssp SEEEEECCCGGGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHHHHHTTHHH---HHHH
T ss_pred CEEEEECCCCcChhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHhhcCchHH---HHHH
Confidence 99999999997654433333222221 1 1 3579999999999999999999998764 222222 1112
Q ss_pred CCchhHHHHHHHHHHHHhhcCC
Q 014942 298 EHPERFFVGEIIREKIFMQYRN 319 (415)
Q Consensus 298 ~~~~~~~i~eiireki~~~~~~ 319 (415)
....+++.+++|++++..+..
T Consensus 297 -~~~~~~~~e~i~e~l~~~~~~ 317 (355)
T 3p32_A 297 -DQQVDWTWQLVRDAVLDRVWS 317 (355)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHT
T ss_pred -HHHHHHHHHHHHHHHHHHHHh
Confidence 225567889999999876543
No 174
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.73 E-value=1.9e-17 Score=148.77 Aligned_cols=157 Identities=20% Similarity=0.201 Sum_probs=100.7
Q ss_pred ccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCC--CeeEEEEeCCCCchhhhhhHhHHHHHHHHhh
Q 014942 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~--~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~ 192 (415)
..+|+++|++|||||||+++|++..+.... .+..+.+...+.+... ...+.+|||||. ..+..+. ..+
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~-~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~--~~~~~~~-------~~~ 74 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLES-KSTIGVEFATRSIQVDGKTIKAQIWDTAGQ--ERYRRIT-------SAY 74 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC----CCCSCEEEEEEEEETTEEEEEEEEECSSG--GGTTCCC-------HHH
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCCCC-CCccceeEEEEEEEECCEEEEEEEEECCCc--hhhhhhh-------HHH
Confidence 358999999999999999999998764322 2222222222333333 357889999994 3333332 223
Q ss_pred hcccceEEEEecCCCCC--chHHHHHHHHhcccCCCCCEEEEEeCCCCCChhH--HHHHHHHHhhcCCCccEEEcccCCC
Q 014942 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE--IAKKLEWYEKFTDVDEVIPVSAKYG 268 (415)
Q Consensus 193 ~~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~--~~~~~~~~~~~~~~~~i~~vSA~~g 268 (415)
+..+|++++|+|.++.. .....++..+......+.|+++|+||+|+..... ...... +....+ ..++.+||+++
T Consensus 75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~-l~~~~~-~~~~d~Sal~~ 152 (199)
T 2f9l_A 75 YRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARA-FAEKNN-LSFIETSALDS 152 (199)
T ss_dssp HTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHH-HHHHTT-CEEEECCTTTC
T ss_pred HhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHH-HHHHcC-CeEEEEeCCCC
Confidence 57899999999987643 2222333322221125689999999999964321 122222 222223 47899999999
Q ss_pred CCHHHHHHHHHhhCC
Q 014942 269 HGVEDIRDWILTKLP 283 (415)
Q Consensus 269 ~gv~eL~~~L~~~l~ 283 (415)
.|+++++++|.+.+.
T Consensus 153 ~~i~~l~~~l~~~~~ 167 (199)
T 2f9l_A 153 TNVEEAFKNILTEIY 167 (199)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999988664
No 175
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.73 E-value=7.6e-18 Score=183.16 Aligned_cols=203 Identities=15% Similarity=0.135 Sum_probs=126.6
Q ss_pred CCccEEEEEecCCCCHHHHHHHHhCCce----------ee-----eeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhh
Q 014942 113 HKSGYVAVLGKPNVGKSTLANQMIGQKL----------SI-----VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177 (415)
Q Consensus 113 ~~~~~V~ivG~~~vGKSSLln~l~~~~~----------~~-----~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~ 177 (415)
....+|+++|++|+|||||+++|++... .. .....+.|.+.....+...+..+.||||||+ ..
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGH--ed 371 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGH--AD 371 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCH--HH
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCCh--HH
Confidence 3456899999999999999999986410 00 0123344444333345667789999999994 33
Q ss_pred hhhHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCC-EEEEEeCCCCCChhH-HH----HHHHHH
Q 014942 178 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKDLIKPGE-IA----KKLEWY 251 (415)
Q Consensus 178 ~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~p-iilV~NK~Dl~~~~~-~~----~~~~~~ 251 (415)
+...+..++..+|++|+|+|++++...+....+..+.. .++| +|+|+||+|+..... .. +..+.+
T Consensus 372 -------F~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~--lgIP~IIVVINKiDLv~d~e~le~i~eEi~elL 442 (1289)
T 3avx_A 372 -------YVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQ--VGVPYIIVFLNKCDMVDDEELLELVEMEVRELL 442 (1289)
T ss_dssp -------HHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHH--HTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHH--cCCCeEEEEEeecccccchhhHHHHHHHHHHHH
Confidence 33445667899999999999998876555555555554 5788 789999999985322 11 222223
Q ss_pred hhcC---CCccEEEcccCCC--------CCHHHHHHHHHhhCCCCCCCCCCCCccccCCchhHHHHHHHHHHHHhhcCCC
Q 014942 252 EKFT---DVDEVIPVSAKYG--------HGVEDIRDWILTKLPLGPAYYPKFQDIVSEHPERFFVGEIIREKIFMQYRNE 320 (415)
Q Consensus 252 ~~~~---~~~~i~~vSA~~g--------~gv~eL~~~L~~~l~~~~~~~~~~~~~~t~~~~~~~i~eiireki~~~~~~e 320 (415)
.... ...+++++||++| .|+.+|++.|.+.++.... ..+.|.++.+..+. . .+.
T Consensus 443 k~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip~P~r--------~~d~Pfr~pId~Vf-----~--i~G 507 (1289)
T 3avx_A 443 SQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPEPER--------AIDKPFLLPIEDVF-----S--ISG 507 (1289)
T ss_dssp HHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSCCCCC--------GGGSCCEEECCEEE-----E--ETT
T ss_pred HhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcCCCcc--------ccccceeeeccccc-----c--ccC
Confidence 2221 2358999999999 5799999999998874211 01223222222111 0 134
Q ss_pred CCceEEEEEEEEEecCCCeeE
Q 014942 321 VPYACQVNVVSYKTRPTAKDF 341 (415)
Q Consensus 321 ipys~~v~i~~~~~~~~~~~~ 341 (415)
.|......+..|..+.+..+.
T Consensus 508 ~GtVvtGrV~sGtLkvGD~V~ 528 (1289)
T 3avx_A 508 RGTVVTGRVERGIIKVGEEVE 528 (1289)
T ss_dssp TEEEEEEECCBSEEETTCEEE
T ss_pred CcEEEEEEEeccEEecCCEEE
Confidence 555566777777776654443
No 176
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.71 E-value=1.9e-17 Score=175.25 Aligned_cols=115 Identities=23% Similarity=0.157 Sum_probs=84.0
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceee-----------eeC------CCCceEEeEEEEEeCCCeeEEEEeCCCCchh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI-----------VTN------KPQTTRHRILGICSGPEYQMILYDTPGIIEK 176 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~-----------~~~------~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~ 176 (415)
+..+|+|+|++|+|||||+++|++..... +.+ ..+.|.......+...+..+++|||||+.
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~-- 85 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYG-- 85 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSG--
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCcc--
Confidence 45589999999999999999998432210 000 11334333444456678899999999953
Q ss_pred hhhhHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCC
Q 014942 177 KIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI 239 (415)
Q Consensus 177 ~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~ 239 (415)
.+. ..+..+++.+|++++|+|++++.......++..+.. .+.|+++|+||+|+.
T Consensus 86 ~f~-------~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~--~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 86 DFV-------GEIRGALEAADAALVAVSAEAGVQVGTERAWTVAER--LGLPRMVVVTKLDKG 139 (665)
T ss_dssp GGH-------HHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHH--TTCCEEEEEECGGGC
T ss_pred chH-------HHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHH--ccCCEEEEecCCchh
Confidence 322 335566789999999999998887777777776666 689999999999986
No 177
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.71 E-value=1.8e-17 Score=176.22 Aligned_cols=162 Identities=22% Similarity=0.213 Sum_probs=109.9
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCc--------------eEEeEEE----E---------EeCCC----
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQT--------------TRHRILG----I---------CSGPE---- 162 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~t--------------t~~~~~~----~---------~~~~~---- 162 (415)
...+|+|+|.+|+|||||+|+|+|..+.+++..|+| |+....+ . +...+
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~ 147 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK 147 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence 345899999999999999999999988777777777 2211000 0 00000
Q ss_pred --------------------------eeEEEEeCCCCchhhhhhHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHH-
Q 014942 163 --------------------------YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEI- 215 (415)
Q Consensus 163 --------------------------~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~- 215 (415)
..+.||||||+... .. ....+..++..||++|||+|++++.......
T Consensus 148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~--~~----~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~ 221 (695)
T 2j69_A 148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDT--EA----RNELSLGYVNNCHAILFVMRASQPCTLGERRY 221 (695)
T ss_dssp HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHH--HT----CHHHHTHHHHSSSEEEEEEETTSTTCHHHHHH
T ss_pred HHhhccccccccceEEEEEccchhccCCeEEEECCCCCch--hh----HHHHHHHHHHhCCEEEEEEeCCCccchhHHHH
Confidence 36999999997431 11 2344667789999999999998876554443
Q ss_pred HHHHhcccCCCCCEEEEEeCCCCCChh--------HHHH----HH----HHHhhcC-------CCccEEEcccC------
Q 014942 216 LEEGVGDHKDKLPILLVLNKKDLIKPG--------EIAK----KL----EWYEKFT-------DVDEVIPVSAK------ 266 (415)
Q Consensus 216 l~~~l~~~~~~~piilV~NK~Dl~~~~--------~~~~----~~----~~~~~~~-------~~~~i~~vSA~------ 266 (415)
+...+.. .+.|+++|+||+|+.... .+.. .. ..+.... ...++++|||+
T Consensus 222 l~~~l~~--~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~ 299 (695)
T 2j69_A 222 LENYIKG--RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRR 299 (695)
T ss_dssp HHHHTTT--SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHH
T ss_pred HHHHHHh--hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhh
Confidence 3334444 578999999999986442 1111 11 1122111 22479999999
Q ss_pred --------CCCCHHHHHHHHHhhCC
Q 014942 267 --------YGHGVEDIRDWILTKLP 283 (415)
Q Consensus 267 --------~g~gv~eL~~~L~~~l~ 283 (415)
+|.|+++|++.|.+.+.
T Consensus 300 ~~~~~~~~~~~Gi~~L~~~L~~~l~ 324 (695)
T 2j69_A 300 LKNPQADLDGTGFPKFMDSLNTFLT 324 (695)
T ss_dssp HHCTTCCCTTSSHHHHHHHHHHHHH
T ss_pred ccCchhhhhccCHHHHHHHHHHHHH
Confidence 99999999999988764
No 178
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.71 E-value=4.5e-17 Score=156.63 Aligned_cols=160 Identities=14% Similarity=0.087 Sum_probs=102.1
Q ss_pred EEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhccc
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~a 196 (415)
||+++|.+|||||||++++.+..........+.|.......+ .....+.+||||| ++.+..- .+ ....+++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v-~~~v~LqIWDTAG--QErf~~~--~l--~~~~yyr~a 73 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHF-STLIDLAVMELPG--QLNYFEP--SY--DSERLFKSV 73 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEE-CSSSCEEEEECCS--CSSSCCC--SH--HHHHHHTTC
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEE-ccEEEEEEEECCC--chhccch--hh--hhhhhccCC
Confidence 589999999999999999886543221111222221111112 2457899999999 4554310 00 124458999
Q ss_pred ceEEEEecCCCCCchHHHHHHHHhc---ccCCCCCEEEEEeCCCCCChhH-------HHHH-HHHHhhc---CCCccEEE
Q 014942 197 DCIVVLVDACKAPERIDEILEEGVG---DHKDKLPILLVLNKKDLIKPGE-------IAKK-LEWYEKF---TDVDEVIP 262 (415)
Q Consensus 197 D~ii~VvD~~~~~~~~~~~l~~~l~---~~~~~~piilV~NK~Dl~~~~~-------~~~~-~~~~~~~---~~~~~i~~ 262 (415)
+++|+|+|+++.......++.+.+. ...++.|+++|+||+|+..... +... .+.+.+. ....++++
T Consensus 74 ~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~e 153 (331)
T 3r7w_B 74 GALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYL 153 (331)
T ss_dssp SEEEEECCCSSCTTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEEC
T ss_pred CEEEEEEECCchHHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEE
Confidence 9999999998875444444433322 2236899999999999986432 2111 1222222 12357999
Q ss_pred cccCCCCCHHHHHHHHHhhCCC
Q 014942 263 VSAKYGHGVEDIRDWILTKLPL 284 (415)
Q Consensus 263 vSA~~g~gv~eL~~~L~~~l~~ 284 (415)
|||++ .+|.+.|..|++.+.+
T Consensus 154 TSAkd-~nV~eAFs~iv~~li~ 174 (331)
T 3r7w_B 154 TSIFD-HSIYEAFSRIVQKLIP 174 (331)
T ss_dssp CCSSS-SHHHHHHHHHHTTSST
T ss_pred eccCC-CcHHHHHHHHHHHHHh
Confidence 99998 5999999999987754
No 179
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.69 E-value=2e-17 Score=161.65 Aligned_cols=184 Identities=20% Similarity=0.305 Sum_probs=115.2
Q ss_pred CccEEEEEecCCCCHHHHHHHHh------CCceeeeeCCCCceEEe--------------------EEEE----------
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMI------GQKLSIVTNKPQTTRHR--------------------ILGI---------- 157 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~------~~~~~~~~~~~~tt~~~--------------------~~~~---------- 157 (415)
+...|+++|++|+|||||+|.|. +.++..+...++++... +...
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~g~~ 134 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGAS 134 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----CHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecCccccccchhH
Confidence 45689999999999999999996 45566666656554310 0000
Q ss_pred ---------EeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCC
Q 014942 158 ---------CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP 228 (415)
Q Consensus 158 ---------~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~p 228 (415)
+...+..++||||||+.+... .....+|++++|+|++.+.. + ..+.....+.|
T Consensus 135 ~~~~~~~~~~~~~~~~i~liDTpG~~~~~~------------~~~~~aD~vl~Vvd~~~~~~-----~-~~l~~~~~~~p 196 (341)
T 2p67_A 135 QRARELMLLCEAAGYDVVIVETVGVGQSET------------EVARMVDCFISLQIAGGGDD-----L-QGIKKGLMEVA 196 (341)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEEECCTTHHH------------HHHTTCSEEEEEECC------------CCCCHHHHHHC
T ss_pred HHHHHHHHHhhccCCCEEEEeCCCccchHH------------HHHHhCCEEEEEEeCCccHH-----H-HHHHHhhhccc
Confidence 013467899999999754211 12479999999999875421 0 01110002468
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHh----hcCC-----CccEEEcccCCCCCHHHHHHHHHhhCC---CCCCCCCCCCccc
Q 014942 229 ILLVLNKKDLIKPGEIAKKLEWYE----KFTD-----VDEVIPVSAKYGHGVEDIRDWILTKLP---LGPAYYPKFQDIV 296 (415)
Q Consensus 229 iilV~NK~Dl~~~~~~~~~~~~~~----~~~~-----~~~i~~vSA~~g~gv~eL~~~L~~~l~---~~~~~~~~~~~~~ 296 (415)
.++|+||+|+............+. .... ..+++++||++|.|+++|+++|.+.++ +++ .+| +..
T Consensus 197 ~ivv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~~~~~~~-~~~---~~r 272 (341)
T 2p67_A 197 DLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKTALTASG-RLQ---QVR 272 (341)
T ss_dssp SEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHHHHHHTT-HHH---HHH
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHHHHHhCC-hHH---HHH
Confidence 899999999987544432222222 1111 347899999999999999999998765 221 222 222
Q ss_pred cCCchhHHHHHHHHHHHHhhcCCC
Q 014942 297 SEHPERFFVGEIIREKIFMQYRNE 320 (415)
Q Consensus 297 t~~~~~~~i~eiireki~~~~~~e 320 (415)
..+ .++.+.|.++++++..+.++
T Consensus 273 ~~~-~~~~~~e~i~e~l~~~~~~~ 295 (341)
T 2p67_A 273 QQQ-SVEWLRKQTEEEVLNHLFAN 295 (341)
T ss_dssp HHH-HHHHHHHHHHHHHHHHHHHC
T ss_pred HHH-HHHHHHHHHHHHHHHHHHhC
Confidence 222 55677888999998877654
No 180
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.68 E-value=4.7e-17 Score=148.08 Aligned_cols=144 Identities=17% Similarity=0.199 Sum_probs=85.6
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeee--eCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIV--TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~--~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~ 191 (415)
+.++|+++|++|||||||+|+|++..+... +..+.++. ......+.+|||||+ ..+..+...+ +..
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~Dt~G~--~~~~~~~~~~---~~~ 78 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA-------DYDGSGVTLVDFPGH--VKLRYKLSDY---LKT 78 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEET-------TGGGSSCEEEECCCC--GGGTHHHHHH---HHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEE-------EeeCceEEEEECCCc--HHHHHHHHHH---HHh
Confidence 557999999999999999999998775421 11221111 124568999999996 3333322222 222
Q ss_pred hhcccceEEEEecCC---CCCchHHHHHHHHhcc----cCCCCCEEEEEeCCCCCChhHHHHH-------HHHHhhcCCC
Q 014942 192 AGINADCIVVLVDAC---KAPERIDEILEEGVGD----HKDKLPILLVLNKKDLIKPGEIAKK-------LEWYEKFTDV 257 (415)
Q Consensus 192 ~~~~aD~ii~VvD~~---~~~~~~~~~l~~~l~~----~~~~~piilV~NK~Dl~~~~~~~~~-------~~~~~~~~~~ 257 (415)
....+|++|+|+|++ ........++...+.. ...+.|+++|+||+|+.....+... ...+.... .
T Consensus 79 ~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~-~ 157 (218)
T 1nrj_B 79 RAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERR-K 157 (218)
T ss_dssp HGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHH-H
T ss_pred ccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHH-h
Confidence 234589999999998 3445555666655433 2257999999999999865433221 12221111 2
Q ss_pred ccEEEcccCCCCC
Q 014942 258 DEVIPVSAKYGHG 270 (415)
Q Consensus 258 ~~i~~vSA~~g~g 270 (415)
.+++++||++|.+
T Consensus 158 ~~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 158 KSLNEVERKINEE 170 (218)
T ss_dssp HHHHC--------
T ss_pred ccccccccccccc
Confidence 4789999998865
No 181
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.68 E-value=1.4e-16 Score=156.49 Aligned_cols=120 Identities=26% Similarity=0.315 Sum_probs=87.9
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhcc
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (415)
..|+|+|.||||||||+|+|++.+ ..++++|+||++++.+.+...+.++.|+||||+...... ...+...+...++.
T Consensus 73 a~V~ivG~PNvGKSTL~n~Lt~~~-~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~--~~~~g~~~l~~i~~ 149 (376)
T 4a9a_A 73 ASVGFVGFPSVGKSTLLSKLTGTE-SEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKD--GRGRGKQVIAVART 149 (376)
T ss_dssp EEEEEECCCCHHHHHHHHHHHSBC-CCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-------CHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHhCCC-CcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchh--hhHHHHHHHHHHHh
Confidence 389999999999999999999987 457899999999999999999999999999999653322 12233455667889
Q ss_pred cceEEEEecCCCCCchHHHHHHHH--hcccCCCCCEEEEEeCCCC
Q 014942 196 ADCIVVLVDACKAPERIDEILEEG--VGDHKDKLPILLVLNKKDL 238 (415)
Q Consensus 196 aD~ii~VvD~~~~~~~~~~~l~~~--l~~~~~~~piilV~NK~Dl 238 (415)
||++++|+|++++.........++ ......+.|.++++||+|.
T Consensus 150 ad~il~vvD~~~p~~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~ 194 (376)
T 4a9a_A 150 CNLLFIILDVNKPLHHKQIIEKELEGVGIRLNKTPPDILIKKKEK 194 (376)
T ss_dssp CSEEEEEEETTSHHHHHHHHHHHHHHTTEEETCCCCCEEEEECSS
T ss_pred cCccccccccCccHHHHHHHHHHHHHhhHhhccCChhhhhhHhhh
Confidence 999999999987653322211111 1100145677778888885
No 182
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.68 E-value=1.8e-16 Score=141.77 Aligned_cols=156 Identities=21% Similarity=0.200 Sum_probs=100.0
Q ss_pred ccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCC--eeEEEEeCCCCchhhhhhHhHHHHHHHHhh
Q 014942 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~l~liDtpG~~~~~~~~l~~~~~~~~~~~ 192 (415)
..+|+|+|++|||||||+++|.+..+... ..+..+.+...+.+...+ ..+.+|||||.. .+..+ +..+
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~-~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~--~~~~~-------~~~~ 98 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNEFNLE-SKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE--RYRAI-------TSAY 98 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCCCCS-CCCCCSEEEEEEEEEETTEEEEEEEEEECSCC--SSSCC-------CHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCC-CCCccceEEEEEEEEECCEEEEEEEEECCCCc--chhhh-------hHHH
Confidence 45899999999999999999998876532 223223333333333333 456789999963 22222 2233
Q ss_pred hcccceEEEEecCCCCC--chHHHHHHHHhcccCCCCCEEEEEeCCCCCChhH--HHHHHHHHhhcCCCccEEEcccCCC
Q 014942 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE--IAKKLEWYEKFTDVDEVIPVSAKYG 268 (415)
Q Consensus 193 ~~~aD~ii~VvD~~~~~--~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~--~~~~~~~~~~~~~~~~i~~vSA~~g 268 (415)
++.++++++|+|.++.. .....++.........+.|+++|+||+|+..... ...... +....+ ..++.+||+++
T Consensus 99 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~-l~~~~~-~~~ld~Sald~ 176 (191)
T 1oix_A 99 YRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARA-FAEKNG-LSFIETSALDS 176 (191)
T ss_dssp HTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHH-HHHHTT-CEEEECCTTTC
T ss_pred hhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHH-HHHHcC-CEEEEEeCCCC
Confidence 67889999999987643 2222333322221125689999999999864221 122222 222223 47899999999
Q ss_pred CCHHHHHHHHHhhC
Q 014942 269 HGVEDIRDWILTKL 282 (415)
Q Consensus 269 ~gv~eL~~~L~~~l 282 (415)
.|+++++++|.+.+
T Consensus 177 ~~v~~l~~~l~~~i 190 (191)
T 1oix_A 177 TNVEAAFQTILTEI 190 (191)
T ss_dssp TTHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998753
No 183
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.66 E-value=2.5e-16 Score=160.18 Aligned_cols=150 Identities=20% Similarity=0.201 Sum_probs=88.5
Q ss_pred ccEEEEEecCCCCHHHHHHHHhCCc--e----------------------eeeeC------CCCceEEeEEEEEeCCCee
Q 014942 115 SGYVAVLGKPNVGKSTLANQMIGQK--L----------------------SIVTN------KPQTTRHRILGICSGPEYQ 164 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~~~~--~----------------------~~~~~------~~~tt~~~~~~~~~~~~~~ 164 (415)
..+|+++|++|+|||||+++|+... + ..+.+ ..+.|.+.....+...+..
T Consensus 43 ~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~~~ 122 (467)
T 1r5b_A 43 HVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHRR 122 (467)
T ss_dssp EEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSSEE
T ss_pred eeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCCeE
Confidence 3589999999999999999997421 1 00111 2344544444456667889
Q ss_pred EEEEeCCCCchhhhhhHhHHHHHHHHhhhcccceEEEEecCCCCCc-------hHHHHHHHHhcccCCCCC-EEEEEeCC
Q 014942 165 MILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPE-------RIDEILEEGVGDHKDKLP-ILLVLNKK 236 (415)
Q Consensus 165 l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~-------~~~~~l~~~l~~~~~~~p-iilV~NK~ 236 (415)
+.||||||+ .. +...+..++..+|++|+|+|++++.. .+....+..+.. .+.| +|+|+||+
T Consensus 123 ~~iiDtPGh--~~-------f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~--~~vp~iivviNK~ 191 (467)
T 1r5b_A 123 FSLLDAPGH--KG-------YVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART--QGINHLVVVINKM 191 (467)
T ss_dssp EEECCCCC--------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH--TTCSSEEEEEECT
T ss_pred EEEEECCCc--HH-------HHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHH--cCCCEEEEEEECc
Confidence 999999995 33 23345556789999999999998631 223333333333 5677 99999999
Q ss_pred CCCC----hhHHH----HHHHHHhhc-C-C---CccEEEcccCCCCCHHHHH
Q 014942 237 DLIK----PGEIA----KKLEWYEKF-T-D---VDEVIPVSAKYGHGVEDIR 275 (415)
Q Consensus 237 Dl~~----~~~~~----~~~~~~~~~-~-~---~~~i~~vSA~~g~gv~eL~ 275 (415)
|+.. ..... +....+... . . ..+++++||++|.|+.+++
T Consensus 192 Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 192 DEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp TSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred cCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 9964 12111 222233222 1 1 3479999999999998754
No 184
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.65 E-value=6.6e-16 Score=145.88 Aligned_cols=127 Identities=20% Similarity=0.339 Sum_probs=89.6
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhh-
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA- 192 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~- 192 (415)
+..+|+++|.+|+|||||+|+|++..+..++..+++|.......+...+..+.+|||||+.. +..+...+.+.+..+
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~--~~~~~~~~~~~i~~~~ 115 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIE--GGYINDMALNIIKSFL 115 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEE--TTEECHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCC--CccchHHHHHHHHHHh
Confidence 46799999999999999999999998776778888887776666777888999999999743 222222222333322
Q ss_pred -hcccceEEEEecCCC-CCchHHHHHHHHhccc-CCC--CCEEEEEeCCCCCChh
Q 014942 193 -GINADCIVVLVDACK-APERIDEILEEGVGDH-KDK--LPILLVLNKKDLIKPG 242 (415)
Q Consensus 193 -~~~aD~ii~VvD~~~-~~~~~~~~l~~~l~~~-~~~--~piilV~NK~Dl~~~~ 242 (415)
...+|++|||+|++. .....+..+...+... ..+ .|+++|+||+|+..+.
T Consensus 116 ~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~ 170 (270)
T 1h65_A 116 LDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPD 170 (270)
T ss_dssp TTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred hcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcC
Confidence 357999999987754 3444443343333321 122 6999999999997543
No 185
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.65 E-value=8.1e-16 Score=144.69 Aligned_cols=126 Identities=20% Similarity=0.245 Sum_probs=89.1
Q ss_pred CCccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhh
Q 014942 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (415)
Q Consensus 113 ~~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~ 192 (415)
.+..+|+++|++|||||||+|+|++.....++..+++|.......+...+..+.+|||||+.. +..+...+.+.+..+
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~--~~~~~~~~~~~i~~~ 111 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVE--AGYVNHQALELIKGF 111 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEE--TTEECHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCC--cccchHHHHHHHHHH
Confidence 356799999999999999999999998766788888888777777788888999999999743 333333333333333
Q ss_pred h--cccceEEEEecCCCC-CchHHHHHHHHhccc-CC--CCCEEEEEeCCCCCC
Q 014942 193 G--INADCIVVLVDACKA-PERIDEILEEGVGDH-KD--KLPILLVLNKKDLIK 240 (415)
Q Consensus 193 ~--~~aD~ii~VvD~~~~-~~~~~~~l~~~l~~~-~~--~~piilV~NK~Dl~~ 240 (415)
+ ..+|++++|+|.+.. ....+..+.+.+... .. ..|+++|+||+|+..
T Consensus 112 l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~ 165 (262)
T 3def_A 112 LVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSP 165 (262)
T ss_dssp TTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCC
T ss_pred HhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCC
Confidence 3 378999999876542 444443333333321 11 249999999999963
No 186
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.64 E-value=1.5e-15 Score=151.43 Aligned_cols=164 Identities=25% Similarity=0.301 Sum_probs=113.0
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCC-eeEEEEeCCCCchhh--hhhHhHHHHHHHHhh
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE-YQMILYDTPGIIEKK--IHMLDSMMMKNVRSA 192 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~-~~l~liDtpG~~~~~--~~~l~~~~~~~~~~~ 192 (415)
..|+|+|++|||||||+++|++.... +..++.+|..+..+.+...+ ..+.++||||+.... ...+...+ ...
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~-i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~f----l~~ 232 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPK-IAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEF----LRH 232 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCE-ECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHH----HHH
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCcc-ccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHH----HHH
Confidence 36999999999999999999988653 56778888777666666654 789999999985321 11122222 223
Q ss_pred hcccceEEEEecCC-CCCchHHHHHHHHhccc--CCCCCEEEEEeCCCCCChhHHHHHHHHHhhcCCCccEEEcccCCCC
Q 014942 193 GINADCIVVLVDAC-KAPERIDEILEEGVGDH--KDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGH 269 (415)
Q Consensus 193 ~~~aD~ii~VvD~~-~~~~~~~~~l~~~l~~~--~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~ 269 (415)
+..++.+++|+|++ ++......+..++.... ....|.++|+||+|+.....+......+... ..+++++||+++.
T Consensus 233 ~era~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~~~~~~l~~~l~~~--g~~vi~iSA~~g~ 310 (416)
T 1udx_A 233 IARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALARE--GLAVLPVSALTGA 310 (416)
T ss_dssp HTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHHHTT--TSCEEECCTTTCT
T ss_pred HHHHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhHHHHHHHHHHHHhc--CCeEEEEECCCcc
Confidence 56899999999997 22222222222221110 0358999999999998763333333433332 2479999999999
Q ss_pred CHHHHHHHHHhhCCCCC
Q 014942 270 GVEDIRDWILTKLPLGP 286 (415)
Q Consensus 270 gv~eL~~~L~~~l~~~~ 286 (415)
|+++|+++|.+.+...+
T Consensus 311 gi~eL~~~i~~~l~~~~ 327 (416)
T 1udx_A 311 GLPALKEALHALVRSTP 327 (416)
T ss_dssp THHHHHHHHHHHHHTSC
T ss_pred CHHHHHHHHHHHHHhcc
Confidence 99999999999887643
No 187
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.64 E-value=1.1e-15 Score=150.38 Aligned_cols=160 Identities=20% Similarity=0.194 Sum_probs=100.5
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEE-----------------------------------------
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRH----------------------------------------- 152 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~----------------------------------------- 152 (415)
.-+.|+|+|.+|||||||+|+|+|..+....... .|+.
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~-vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 111 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGI-VTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDET 111 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSS-CCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCc-ccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHH
Confidence 4459999999999999999999997753211111 1100
Q ss_pred -------------e-EEEEEeCCCeeEEEEeCCCCchhh----hhhHhHHHHHHHHhhhcccceEEEEecCCCCC--chH
Q 014942 153 -------------R-ILGICSGPEYQMILYDTPGIIEKK----IHMLDSMMMKNVRSAGINADCIVVLVDACKAP--ERI 212 (415)
Q Consensus 153 -------------~-~~~~~~~~~~~l~liDtpG~~~~~----~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~--~~~ 212 (415)
. ...+.......+.+|||||+.... ...+...+...+..++..+|++|+|+|+.... ...
T Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~ 191 (360)
T 3t34_A 112 DRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSD 191 (360)
T ss_dssp HHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCH
T ss_pred HHhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHH
Confidence 0 011122334579999999985421 12344455666778899999999999875432 222
Q ss_pred HHHHHHHhcccCCCCCEEEEEeCCCCCChhH-HHHHHHHHhhcCCCccEEEcccCCCCCHHHHHHH
Q 014942 213 DEILEEGVGDHKDKLPILLVLNKKDLIKPGE-IAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDW 277 (415)
Q Consensus 213 ~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~i~~vSA~~g~gv~eL~~~ 277 (415)
...+...+.. .+.|+++|+||+|+..... .......... ....+++++|+.++.|+++.+..
T Consensus 192 ~~~l~~~~~~--~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~v~~~s~~~i~~~~~~ 254 (360)
T 3t34_A 192 AIKISREVDP--SGDRTFGVLTKIDLMDKGTDAVEILEGRSF-KLKYPWVGVVNRSQADINKNVDM 254 (360)
T ss_dssp HHHHHHHSCT--TCTTEEEEEECGGGCCTTCCSHHHHTTSSS-CCSSCCEEECCCCHHHHHTTCCH
T ss_pred HHHHHHHhcc--cCCCEEEEEeCCccCCCcccHHHHHcCccc-cccCCeEEEEECChHHhccCCCH
Confidence 2333444444 5789999999999986432 2222221111 22347899999999988876544
No 188
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.64 E-value=9.7e-17 Score=171.14 Aligned_cols=116 Identities=17% Similarity=0.147 Sum_probs=82.4
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCcee-----e------eeC------CCCceEEeEEEEEe-------CCCeeEEEEe
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLS-----I------VTN------KPQTTRHRILGICS-------GPEYQMILYD 169 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~-----~------~~~------~~~tt~~~~~~~~~-------~~~~~l~liD 169 (415)
+-.+|+|+||.++|||||..+|+...-. . +.+ ..|.|.......+. ..++.++|+|
T Consensus 12 ~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlID 91 (709)
T 4fn5_A 12 RYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVID 91 (709)
T ss_dssp GEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEEC
T ss_pred HCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEe
Confidence 3458999999999999999999732210 0 111 11112111111122 2367899999
Q ss_pred CCCCchhhhhhHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCC
Q 014942 170 TPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (415)
Q Consensus 170 tpG~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~ 240 (415)
|||+.+ |...+..+++-+|++|+|||+..+.+.+++.+++.... .++|.++|+||+|+..
T Consensus 92 TPGHvD---------F~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~--~~lp~i~~iNKiDr~~ 151 (709)
T 4fn5_A 92 TPGHVD---------FTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANK--YGVPRIVYVNKMDRQG 151 (709)
T ss_dssp CCSCTT---------CHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHH--HTCCEEEEEECSSSTT
T ss_pred CCCCcc---------cHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHH--cCCCeEEEEccccccC
Confidence 999755 33456677899999999999999999999999888877 7899999999999863
No 189
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.63 E-value=1e-15 Score=150.61 Aligned_cols=166 Identities=14% Similarity=0.155 Sum_probs=85.4
Q ss_pred ccEEEEEecCCCCHHHHHHHHhCCceeeeeCC--------CCceEEeEEEEEeCCC--eeEEEEeCCCCch-----hhhh
Q 014942 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNK--------PQTTRHRILGICSGPE--YQMILYDTPGIIE-----KKIH 179 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~--------~~tt~~~~~~~~~~~~--~~l~liDtpG~~~-----~~~~ 179 (415)
..+|+|+|++|+|||||+|+|++......... +..+.......+...+ ..+.+|||||+.+ ..+.
T Consensus 37 ~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~~ 116 (361)
T 2qag_A 37 EFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFK 116 (361)
T ss_dssp EECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------C
T ss_pred CEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHHH
Confidence 35799999999999999999987654322111 1112222222223333 3789999999732 2233
Q ss_pred hHhHHHHHHHHhhhcc-------------cceEEEEecC-CCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHH
Q 014942 180 MLDSMMMKNVRSAGIN-------------ADCIVVLVDA-CKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA 245 (415)
Q Consensus 180 ~l~~~~~~~~~~~~~~-------------aD~ii~VvD~-~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~ 245 (415)
.+...+......++.. +|+++|+++. .++....+..+...+. .+.|+|+|+||+|+.....+.
T Consensus 117 ~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l~---~~~piIlV~NK~Dl~~~~ev~ 193 (361)
T 2qag_A 117 TIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH---NKVNIVPVIAKADTLTLKERE 193 (361)
T ss_dssp CTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHTC---S-SCEEEEEECCSSSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHhc---cCCCEEEEEECCCCCCHHHHH
Confidence 3333222222233322 3568888876 5566666655555443 578999999999999876655
Q ss_pred HHHHHH---hhcCCCccEEEcccCCCCC---HHHHHHHHHhhCCC
Q 014942 246 KKLEWY---EKFTDVDEVIPVSAKYGHG---VEDIRDWILTKLPL 284 (415)
Q Consensus 246 ~~~~~~---~~~~~~~~i~~vSA~~g~g---v~eL~~~L~~~l~~ 284 (415)
.....+ ....+ .+++++||++|.| +..+...|.+.+|.
T Consensus 194 ~~k~~i~~~~~~~~-i~~~~~Sa~~~~~~e~~~~l~~~i~~~ip~ 237 (361)
T 2qag_A 194 RLKKRILDEIEEHN-IKIYHLPDAESDEDEDFKEQTRLLKASIPF 237 (361)
T ss_dssp HHHHHHHHHTTCC--CCSCCCC---------CHHHHHHHHHTCSC
T ss_pred HHHHHHHHHHHHCC-CCEEeCCCcCCCcchhHHHHHHHHHhcCCC
Confidence 432222 22223 4889999999987 23345555555553
No 190
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.60 E-value=3.7e-16 Score=164.61 Aligned_cols=200 Identities=19% Similarity=0.173 Sum_probs=133.9
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCceee-----e------eCCC------CceEEeEEEEEeCCCeeEEEEeCCCCchhhh
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQKLSI-----V------TNKP------QTTRHRILGICSGPEYQMILYDTPGIIEKKI 178 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~~~~-----~------~~~~------~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~ 178 (415)
.+|+|+||.++|||||+.+|+...-.+ + .+.. |.|.......+.+.++.++|+||||+.+
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~D--- 79 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMD--- 79 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSS---
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHH---
Confidence 479999999999999999996321110 1 1110 2222222334677889999999999754
Q ss_pred hhHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChh---HHHHHHHHH----
Q 014942 179 HMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG---EIAKKLEWY---- 251 (415)
Q Consensus 179 ~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~---~~~~~~~~~---- 251 (415)
|...+..+++-+|++|+|||+..+.+.+++.+++.+.. .++|.++++||+|+...+ .+.++.+.+
T Consensus 80 ------F~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~--~~lp~i~~INKmDr~~a~~~~~~~~i~~~l~~~~ 151 (638)
T 3j25_A 80 ------FLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRK--MGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEI 151 (638)
T ss_dssp ------THHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHH--HTCSCEECCEECCSSSCCSHHHHHHHHHTTCCCC
T ss_pred ------HHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHH--cCCCeEEEEeccccccCCHHHHHHHHHHHhCCCc
Confidence 33456677899999999999999999999999888877 789999999999986421 111111100
Q ss_pred -------------------------------------------------------hhcCCCccEEEcccCCCCCHHHHHH
Q 014942 252 -------------------------------------------------------EKFTDVDEVIPVSAKYGHGVEDIRD 276 (415)
Q Consensus 252 -------------------------------------------------------~~~~~~~~i~~vSA~~g~gv~eL~~ 276 (415)
.......|+++.||++|.||+.|++
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd 231 (638)
T 3j25_A 152 VIKQKVELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDNLIE 231 (638)
T ss_dssp CCCCCCCSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSHHHHHH
T ss_pred cccceeEeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCCCchhHhh
Confidence 0112345889999999999999999
Q ss_pred HHHhhCCCCCCCCCCCCccccCCchhHHHHHHHHHHHHhhcCCCCCceEEEEEEEEEecCCCeeE
Q 014942 277 WILTKLPLGPAYYPKFQDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTRPTAKDF 341 (415)
Q Consensus 277 ~L~~~l~~~~~~~~~~~~~~t~~~~~~~i~eiireki~~~~~~eipys~~v~i~~~~~~~~~~~~ 341 (415)
.|.+.+|......+. |. .+.++ |+ ...+..+..+.++|.+|+.+.+..++
T Consensus 232 ~i~~~~p~p~~~~~~--------~~---~~~Vf--k~--~~d~~~G~la~~RV~sG~l~~g~~v~ 281 (638)
T 3j25_A 232 VITNKFYSSTHRGPS--------EL---CGNVF--KI--EYTKKRQRLAYIRLYSGVLHLRDSVR 281 (638)
T ss_dssp HHHHSCCCSGGGSCC--------CC---CBEEB--CC--CCCSTTCCCCBCCBSSBCCCSCCCSS
T ss_pred hhhccccCcccchhh--------hh---cceee--ee--eeeccCceEEEEEEEcCcccCCCccc
Confidence 999999863221111 10 01011 11 12566677788888888776654443
No 191
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.60 E-value=1.2e-15 Score=135.79 Aligned_cols=125 Identities=18% Similarity=0.244 Sum_probs=77.7
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceee--eeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI--VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~--~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~ 191 (415)
+.++|+++|.+|||||||+|+|++..+.. .+..+.++. ...+..+.+|||||.. .+...... .+..
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~Dt~G~~--~~~~~~~~---~~~~ 114 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA-------DYDGSGVTLVDFPGHV--KLRYKLSD---YLKT 114 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSSCC-------------------CCCCTTCSEEEETTCC--BSSCCHHH---HHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceee-------eecCCeEEEEECCCCc--hHHHHHHH---HHHh
Confidence 55699999999999999999999876532 122222222 1255689999999963 33222111 1233
Q ss_pred hhcccceEEEEecCC-CCC--chHHHHHHHHhcc----cCCCCCEEEEEeCCCCCChhHHHHHHHH
Q 014942 192 AGINADCIVVLVDAC-KAP--ERIDEILEEGVGD----HKDKLPILLVLNKKDLIKPGEIAKKLEW 250 (415)
Q Consensus 192 ~~~~aD~ii~VvD~~-~~~--~~~~~~l~~~l~~----~~~~~piilV~NK~Dl~~~~~~~~~~~~ 250 (415)
.+..+|++|+|+|++ +.. .....++...+.. ...+.|+++|+||+|+.....+....+.
T Consensus 115 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~ 180 (193)
T 2ged_A 115 RAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDA 180 (193)
T ss_dssp HGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHH
T ss_pred hcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHH
Confidence 346699999999998 321 2333444444332 1257999999999999865544444433
No 192
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.60 E-value=2.7e-15 Score=140.49 Aligned_cols=169 Identities=20% Similarity=0.152 Sum_probs=105.8
Q ss_pred CCCccEEEEEecCCCCHHHHHHHHh-----CCceeeeeCCCCceEE------------eEEEEE----------------
Q 014942 112 NHKSGYVAVLGKPNVGKSTLANQMI-----GQKLSIVTNKPQTTRH------------RILGIC---------------- 158 (415)
Q Consensus 112 ~~~~~~V~ivG~~~vGKSSLln~l~-----~~~~~~~~~~~~tt~~------------~~~~~~---------------- 158 (415)
..+...++++|.+|||||||++.|. +.++..+...++.+.. ......
T Consensus 11 ~~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (262)
T 1yrb_A 11 GMASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVESYDR 90 (262)
T ss_dssp TCCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTTCCHHHHHHHHHHH
T ss_pred CcceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCCccccCCCCCCChhhcccHHHHhhccCCCCCcEEecHHH
Confidence 3466789999999999999999998 7777777655542210 000000
Q ss_pred -------------e-CCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHH-----HHHH
Q 014942 159 -------------S-GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEI-----LEEG 219 (415)
Q Consensus 159 -------------~-~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~-----l~~~ 219 (415)
. ..++.++||||||... ...+.. +......++.. +++|+++|++........+ ....
T Consensus 91 ~~~~~~~l~~~l~~~~~~~d~iiiDtpG~~~--~~~~~~-l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~ 166 (262)
T 1yrb_A 91 LMEKFNEYLNKILRLEKENDYVLIDTPGQME--TFLFHE-FGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLI 166 (262)
T ss_dssp HHTTHHHHHHHHHHHHHHCSEEEEECCSSHH--HHHHSH-HHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHhhcCCEEEEeCCCccc--hhhhhh-hHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHH
Confidence 0 0134899999999643 221211 11222334566 9999999987554333221 1111
Q ss_pred hcccCCCCCEEEEEeCCCCCChhHHHHHHHH----------------------------HhhcCCCccEEEcccCCCCCH
Q 014942 220 VGDHKDKLPILLVLNKKDLIKPGEIAKKLEW----------------------------YEKFTDVDEVIPVSAKYGHGV 271 (415)
Q Consensus 220 l~~~~~~~piilV~NK~Dl~~~~~~~~~~~~----------------------------~~~~~~~~~i~~vSA~~g~gv 271 (415)
... .+.|+++|+||+|+..........+. +.......+++++||++|.|+
T Consensus 167 ~~~--~~~p~~iv~NK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi 244 (262)
T 1yrb_A 167 DLR--LGATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGF 244 (262)
T ss_dssp HHH--HTSCEEEEECCGGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTH
T ss_pred hcc--cCCCeEEEEecccccccccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccH
Confidence 122 46899999999999865433221111 122223347899999999999
Q ss_pred HHHHHHHHhhCCCCC
Q 014942 272 EDIRDWILTKLPLGP 286 (415)
Q Consensus 272 ~eL~~~L~~~l~~~~ 286 (415)
++|+++|.+.++.++
T Consensus 245 ~~l~~~i~~~~~~~~ 259 (262)
T 1yrb_A 245 EDLETLAYEHYCTCG 259 (262)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcccc
Confidence 999999998876543
No 193
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.60 E-value=1.3e-15 Score=148.40 Aligned_cols=185 Identities=21% Similarity=0.300 Sum_probs=114.9
Q ss_pred CccEEEEEecCCCCHHHHHHHHh------CCceeeeeCCCCceEE-----------------eEEEE-------------
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMI------GQKLSIVTNKPQTTRH-----------------RILGI------------- 157 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~------~~~~~~~~~~~~tt~~-----------------~~~~~------------- 157 (415)
+...|+|+|++|+|||||+|.|. +.++.+.+..+.++.. .....
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~t 133 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGVA 133 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccccccchH
Confidence 45689999999999999999997 4555554444433221 00000
Q ss_pred ---------EeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCC
Q 014942 158 ---------CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP 228 (415)
Q Consensus 158 ---------~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~p 228 (415)
+...+.+++|+||||+.+... .....+|++++|+|+..+.. + +.+.......|
T Consensus 134 r~~~e~~~~~~~~~~~~iliDT~Gi~~~~~------------~v~~~~d~vl~v~d~~~~~~-----~-~~i~~~i~~~~ 195 (337)
T 2qm8_A 134 AKTRETMLLCEAAGFDVILVETVGVGQSET------------AVADLTDFFLVLMLPGAGDE-----L-QGIKKGIFELA 195 (337)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECSSSSCHH------------HHHTTSSEEEEEECSCC------------CCTTHHHHC
T ss_pred HHHHHHHHHHhcCCCCEEEEECCCCCcchh------------hHHhhCCEEEEEEcCCCccc-----H-HHHHHHHhccc
Confidence 122577999999999854211 11468999999999864321 0 00111001346
Q ss_pred EEEEEeCCCCCChh-HHHHHHHHHhh----cCC-----CccEEEcccCCCCCHHHHHHHHHhhCC---CCCCCCCCCCcc
Q 014942 229 ILLVLNKKDLIKPG-EIAKKLEWYEK----FTD-----VDEVIPVSAKYGHGVEDIRDWILTKLP---LGPAYYPKFQDI 295 (415)
Q Consensus 229 iilV~NK~Dl~~~~-~~~~~~~~~~~----~~~-----~~~i~~vSA~~g~gv~eL~~~L~~~l~---~~~~~~~~~~~~ 295 (415)
.++|+||+|+.... ......+.+.. ... ..+++++||++|.|+++|++.|.+..+ ++++ + . +.
T Consensus 196 ~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~~~~~~~~-~-~--~~ 271 (337)
T 2qm8_A 196 DMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRSKLTATGE-I-A--GK 271 (337)
T ss_dssp SEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHHHHHHTTH-H-H--HH
T ss_pred cEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHhCcH-H-H--HH
Confidence 78888999975422 22112222211 111 357899999999999999999988764 2222 2 1 33
Q ss_pred ccCCchhHHHHHHHHHHHHhhcCCCC
Q 014942 296 VSEHPERFFVGEIIREKIFMQYRNEV 321 (415)
Q Consensus 296 ~t~~~~~~~i~eiireki~~~~~~ei 321 (415)
.+.+. .+++.+++|++++..+++..
T Consensus 272 r~~~~-~~~~~~~i~~~~~~~~~~~~ 296 (337)
T 2qm8_A 272 RREQD-VKWMWALVHERLHQRLVGSA 296 (337)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHTSSH
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHhCc
Confidence 33333 56889999999999887654
No 194
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=99.58 E-value=2.6e-17 Score=165.20 Aligned_cols=244 Identities=16% Similarity=0.180 Sum_probs=142.1
Q ss_pred cEEEEEecCCCCHHHHHHHHhC------CceeeeeCCCC------------------------ceEEeE----EEEEeCC
Q 014942 116 GYVAVLGKPNVGKSTLANQMIG------QKLSIVTNKPQ------------------------TTRHRI----LGICSGP 161 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~------~~~~~~~~~~~------------------------tt~~~~----~~~~~~~ 161 (415)
..|+++|.+||||||+++.|.+ .++..++..+. +++++. .......
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~~ 179 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKFK 179 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTTS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHhh
Confidence 4799999999999999999875 33433332211 222211 0011125
Q ss_pred CeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCC-C-EEEEEeCCCCC
Q 014942 162 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKL-P-ILLVLNKKDLI 239 (415)
Q Consensus 162 ~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~-p-iilV~NK~Dl~ 239 (415)
++.++|+||||..... ..+...+. . ...+..+|.+++|+|++.+.. .... ...+. ... | ..+|+||+|..
T Consensus 180 ~~D~vIIDT~G~~~~~-~~l~~~l~-~-i~~~~~~d~vllVvda~~g~~-~~~~-~~~~~---~~~~~i~gvVlnK~D~~ 251 (432)
T 2v3c_C 180 KADVLIIDTAGRHKEE-KGLLEEMK-Q-IKEITNPDEIILVIDGTIGQQ-AGIQ-AKAFK---EAVGEIGSIIVTKLDGS 251 (432)
T ss_dssp SCSEEEEECCCSCSSH-HHHHHHHH-H-TTSSSCCSEEEEEEEGGGGGG-HHHH-HHHHH---TTSCSCEEEEEECSSSC
T ss_pred CCCEEEEcCCCCcccc-HHHHHHHH-H-HHHHhcCcceeEEeeccccHH-HHHH-HHHHh---hcccCCeEEEEeCCCCc
Confidence 6789999999975421 11211111 1 122347899999999976542 2221 22222 335 5 88999999986
Q ss_pred ChhH-HHHHHHHHh-------------hcCCCccEEEcccCCCCC-HHHHHHHHHhhCCCCCCCCCCCCccccCCchhHH
Q 014942 240 KPGE-IAKKLEWYE-------------KFTDVDEVIPVSAKYGHG-VEDIRDWILTKLPLGPAYYPKFQDIVSEHPERFF 304 (415)
Q Consensus 240 ~~~~-~~~~~~~~~-------------~~~~~~~i~~vSA~~g~g-v~eL~~~L~~~l~~~~~~~~~~~~~~t~~~~~~~ 304 (415)
.... ......... ....+.+..++|+..|.| +..|++.+.+.+++ +. ++.++++.
T Consensus 252 ~~~g~~l~~~~~~~~pi~~ig~Ge~~~dl~~f~~~~~~s~l~g~gdi~~L~e~~~~~~~e---------~~-~~~~~k~~ 321 (432)
T 2v3c_C 252 AKGGGALSAVAETKAPIKFIGIGEGIDDLEPFDPKKFISRLLGMGDLESLLEKAEDMVDE---------KT-EESIDAIM 321 (432)
T ss_dssp STTHHHHHHHHHSSCCEEEECCSSSSSSCCBCCHHHHHHHHTCSSCSSTTSSTTTSCSCS---------SS-STTHHHHC
T ss_pred cchHHHHHHHHHHCCCEEEeecCccccccccCCHHHHHHHHcCCCcHHHHHHHHHHHHHh---------hh-HHHHHHHH
Confidence 4322 222222111 111234456778888888 88777777665443 33 55677776
Q ss_pred HHHHHHHHHHhhcCC------------CCCceEEE-EEEEEEecCCCeeEEEEEEE----EeeCCceeEEeecCChHHHH
Q 014942 305 VGEIIREKIFMQYRN------------EVPYACQV-NVVSYKTRPTAKDFIQVEIV----VEKNSQKIILIGKGGKALKL 367 (415)
Q Consensus 305 i~eiireki~~~~~~------------eipys~~v-~i~~~~~~~~~~~~i~~~~~----~~r~~q~~iiiG~~g~~i~~ 367 (415)
..++.++.++..+++ ++||...+ ....++..+....++.+.|+ +||++++.| +|+++++
T Consensus 322 ~~~~~~~~~~~~l~~~~~~g~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~a~i~smt~~er~~~~~i----~~sr~~r 397 (432)
T 2v3c_C 322 RGKFTLNELMTQLEAIENMGSMKKILSMIPGFGGAMPKELSHLTEAKIKKYKVIISSMTKEERENPKII----KASRIRR 397 (432)
T ss_dssp CSCCHHHHHHHHTTTTSCC-----------------------CCHHHHHHHHHHHTTSCHHHHSSCTTC----CHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHccccccccchhhhcccHHHHHHHHHHHHhCCHHHhhCcccc----CHHHHHH
Confidence 677888999988886 99996542 23444322223456667788 999999944 7999999
Q ss_pred HHHHHHH---HHHHHhC
Q 014942 368 LATAARL---DIEDFLQ 381 (415)
Q Consensus 368 i~~~ar~---~l~~~~~ 381 (415)
|+..|+. ++.+++.
T Consensus 398 I~~gsg~~~~~v~~ll~ 414 (432)
T 2v3c_C 398 IARGSGTTENDVREVLR 414 (432)
T ss_dssp HHHHTTSCHHHHHHHHH
T ss_pred HHhhcCCCHHHHHHHHH
Confidence 9999975 6666554
No 195
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.57 E-value=3.5e-15 Score=136.01 Aligned_cols=153 Identities=16% Similarity=0.217 Sum_probs=98.0
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCC-----ceeeeeCCCCceEEe--------EEEEE------------------eCCC
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQ-----KLSIVTNKPQTTRHR--------ILGIC------------------SGPE 162 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~-----~~~~~~~~~~tt~~~--------~~~~~------------------~~~~ 162 (415)
+.++|+++|.+|||||||+++|++. +...+...++++.+. ....+ ...+
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 4468999999999999999999864 334444444432110 00011 1234
Q ss_pred eeEEEEeCCCCchhhhhhHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChh
Q 014942 163 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG 242 (415)
Q Consensus 163 ~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~ 242 (415)
..+.+|||+|....+.. +...++.+++|+|++.+...... .... .+.|+++|+||+|+....
T Consensus 109 ~d~iiidt~G~~~~~~~------------~~~~~~~~i~vvd~~~~~~~~~~----~~~~--~~~~~iiv~NK~Dl~~~~ 170 (221)
T 2wsm_A 109 CDLLLIENVGNLICPVD------------FDLGENYRVVMVSVTEGDDVVEK----HPEI--FRVADLIVINKVALAEAV 170 (221)
T ss_dssp CSEEEEEEEEBSSGGGG------------CCCSCSEEEEEEEGGGCTTHHHH----CHHH--HHTCSEEEEECGGGHHHH
T ss_pred CCEEEEeCCCCCCCCch------------hccccCcEEEEEeCCCcchhhhh----hhhh--hhcCCEEEEecccCCcch
Confidence 67899999994211100 01256789999999876432221 1111 357899999999986431
Q ss_pred --HHHHHHHHHhhcCCCccEEEcccCCCCCHHHHHHHHHhhCCC
Q 014942 243 --EIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPL 284 (415)
Q Consensus 243 --~~~~~~~~~~~~~~~~~i~~vSA~~g~gv~eL~~~L~~~l~~ 284 (415)
......+.+.......+++++||++|.|+++++++|.+.+..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~ 214 (221)
T 2wsm_A 171 GADVEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNV 214 (221)
T ss_dssp TCCHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC-
T ss_pred hhHHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHH
Confidence 334444444443444689999999999999999999987653
No 196
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.52 E-value=6.6e-14 Score=136.83 Aligned_cols=89 Identities=24% Similarity=0.254 Sum_probs=61.9
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCC-----------------eeEEEEeCCCCchhhh
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE-----------------YQMILYDTPGIIEKKI 178 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~-----------------~~l~liDtpG~~~~~~ 178 (415)
.+|+|+|.||||||||+|+|++.. ..++.+|++|..+..+.+...+ ..+.+|||||+.....
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~-~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~ 81 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAG-IEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS 81 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC-------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccccc
Confidence 479999999999999999999987 4467888888776665555544 4799999999854221
Q ss_pred hhHhHHHHHHHHhhhcccceEEEEecCCC
Q 014942 179 HMLDSMMMKNVRSAGINADCIVVLVDACK 207 (415)
Q Consensus 179 ~~l~~~~~~~~~~~~~~aD~ii~VvD~~~ 207 (415)
. ...+...+..+++.+|++++|+|+++
T Consensus 82 ~--~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 82 K--GEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp H--HGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred c--cchHHHHHHHHHHhcCeEEEEEecCC
Confidence 1 11111233455789999999999985
No 197
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.49 E-value=1.9e-13 Score=136.32 Aligned_cols=163 Identities=15% Similarity=0.202 Sum_probs=79.9
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCceeeee------CCCCceE-EeEEEEEeCC--CeeEEEEeCCCCchhh-----hhhH
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVT------NKPQTTR-HRILGICSGP--EYQMILYDTPGIIEKK-----IHML 181 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~~~~~~------~~~~tt~-~~~~~~~~~~--~~~l~liDtpG~~~~~-----~~~l 181 (415)
.+|+|+|++|||||||+|.|+|..+.... ....++. ..+...+... ...+.+|||||+.... +..+
T Consensus 32 f~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~i 111 (418)
T 2qag_C 32 FTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPV 111 (418)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CHHH
T ss_pred EEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHHHH
Confidence 47899999999999999999987653111 0112222 1111112222 2368999999974321 1111
Q ss_pred hHHHHHHHH-----------hhhcc--cceEEEEecCC-CCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHHH
Q 014942 182 DSMMMKNVR-----------SAGIN--ADCIVVLVDAC-KAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKK 247 (415)
Q Consensus 182 ~~~~~~~~~-----------~~~~~--aD~ii~VvD~~-~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~~ 247 (415)
......... .++.+ ++++||+++.+ +++...+..+...+. .+.|+|+|+||+|+.....+...
T Consensus 112 ~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~---~~v~iIlVinK~Dll~~~ev~~~ 188 (418)
T 2qag_C 112 IDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH---EKVNIIPLIAKADTLTPEECQQF 188 (418)
T ss_dssp HHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT---TTSEEEEEEESTTSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh---ccCcEEEEEEcccCccHHHHHHH
Confidence 111111111 12333 45677777776 577776654444443 47899999999999887665432
Q ss_pred H----HHHhhcCCCccEEEcccCCCCCHHHHHHHHHhhCC
Q 014942 248 L----EWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLP 283 (415)
Q Consensus 248 ~----~~~~~~~~~~~i~~vSA~~g~gv~eL~~~L~~~l~ 283 (415)
. +.+... ..+++++||+++.++++++..|...+|
T Consensus 189 k~~i~~~~~~~--~i~~~~~sa~~~~~v~~~~~~l~~~iP 226 (418)
T 2qag_C 189 KKQIMKEIQEH--KIKIYEFPETDDEEENKLVKKIKDRLP 226 (418)
T ss_dssp HHHHHHHHHHH--TCCCCCCC-----------------CC
T ss_pred HHHHHHHHHHc--CCeEEeCCCCCCcCHHHHHHHHHhhCC
Confidence 2 222222 247899999999999888777776655
No 198
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.48 E-value=1.7e-13 Score=131.51 Aligned_cols=163 Identities=17% Similarity=0.166 Sum_probs=81.0
Q ss_pred ccEEEEEecCCCCHHHHHHHHhCCceeeeeCC-------CCce-EEeEEEEEe--CCCeeEEEEeCCCCch-----hhhh
Q 014942 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNK-------PQTT-RHRILGICS--GPEYQMILYDTPGIIE-----KKIH 179 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~-------~~tt-~~~~~~~~~--~~~~~l~liDtpG~~~-----~~~~ 179 (415)
+.+|+|+|++|||||||+|+|.+......+.. ..+. ......... .....+.+|||||+.. +.+.
T Consensus 18 ~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~ 97 (301)
T 2qnr_A 18 EFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFK 97 (301)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------CT
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHHH
Confidence 35899999999999999999988633222211 0111 111111222 2235789999999732 1222
Q ss_pred hHhHHHHHHHHhhhc-------------ccceEEEEecCCC-CCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHH
Q 014942 180 MLDSMMMKNVRSAGI-------------NADCIVVLVDACK-APERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA 245 (415)
Q Consensus 180 ~l~~~~~~~~~~~~~-------------~aD~ii~VvD~~~-~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~ 245 (415)
.+...+......++. .+++++|+++.+. ++......+...+ ..+.|+++|+||+|+....++.
T Consensus 98 ~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l---~~~~~iilV~~K~Dl~~~~e~~ 174 (301)
T 2qnr_A 98 TIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI---HNKVNIVPVIAKADTLTLKERE 174 (301)
T ss_dssp THHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHH---TTTSCEEEEECCGGGSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHH---HhcCCEEEEEEeCCCCCHHHHH
Confidence 222211111111111 2455777777544 4666554333332 2467999999999998765443
Q ss_pred ----HHHHHHhhcCCCccEEEcccCCCCCHHHHHHHHHhhCC
Q 014942 246 ----KKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLP 283 (415)
Q Consensus 246 ----~~~~~~~~~~~~~~i~~vSA~~g~gv~eL~~~L~~~l~ 283 (415)
...+.... .+ .+++++||++| |+++++..+.+.+.
T Consensus 175 ~~~~~~~~~~~~-~~-~~~~e~Sa~~~-~v~e~f~~l~~~i~ 213 (301)
T 2qnr_A 175 RLKKRILDEIEE-HN-IKIYHLPDAES-DEDEDFKEQTRLLK 213 (301)
T ss_dssp HHHHHHHHHHHH-TT-CCCCCCC----------CHHHHHHHH
T ss_pred HHHHHHHHHHHH-cC-CeEEecCCccc-cccHHHHHHHHHhh
Confidence 22223333 23 47899999999 99999988887664
No 199
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.46 E-value=1.1e-15 Score=155.78 Aligned_cols=258 Identities=16% Similarity=0.179 Sum_probs=142.1
Q ss_pred CccEEEEEecCCCCHHHHHHHHh------CCceeeeeCCCCce-----------E--EeEEEE----------------E
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMI------GQKLSIVTNKPQTT-----------R--HRILGI----------------C 158 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~------~~~~~~~~~~~~tt-----------~--~~~~~~----------------~ 158 (415)
+...|+++|.+||||||++++|. |.++..++..+... + ..+... +
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 34589999999999999999998 77776665432110 0 011110 0
Q ss_pred eCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCE-EEEEeCCC
Q 014942 159 SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPI-LLVLNKKD 237 (415)
Q Consensus 159 ~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~pi-ilV~NK~D 237 (415)
...++.++||||||..+... .+...+.. ... ...+|.+++|+|++.+.... . ....+.. ..|+ ++|+||+|
T Consensus 180 ~~~~~DvvIIDTpG~~~~~~-~l~~el~~-~~~-~i~pd~vllVvDa~~g~~~~-~-~a~~~~~---~~~i~gvVlNK~D 251 (504)
T 2j37_W 180 KNENFEIIIVDTSGRHKQED-SLFEEMLQ-VAN-AIQPDNIVYVMDASIGQACE-A-QAKAFKD---KVDVASVIVTKLD 251 (504)
T ss_dssp HHTTCCEEEEEECCCCTTCH-HHHHHHHH-HHH-HHCCSEEEEEEETTCCTTHH-H-HHHHHHH---HHCCCCEEEECTT
T ss_pred HHCCCcEEEEeCCCCcccch-hHHHHHHH-HHh-hhcCceEEEEEeccccccHH-H-HHHHHHh---hcCceEEEEeCCc
Confidence 11567899999999754221 12122211 112 23789999999998765422 2 2222222 2675 89999999
Q ss_pred CCChhH-HHHHHHHHh-------------hcCCCccEEEcccCCCCC-HHHHHHHHHhhCCCCCCCCCCCCccccCC-ch
Q 014942 238 LIKPGE-IAKKLEWYE-------------KFTDVDEVIPVSAKYGHG-VEDIRDWILTKLPLGPAYYPKFQDIVSEH-PE 301 (415)
Q Consensus 238 l~~~~~-~~~~~~~~~-------------~~~~~~~i~~vSA~~g~g-v~eL~~~L~~~l~~~~~~~~~~~~~~t~~-~~ 301 (415)
...... .......+. ....+.+.+++||.+|.| +.+|++++.+...+....... ...+.. ..
T Consensus 252 ~~~~~g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~~~~~~~~l~~--k~~~g~~~l 329 (504)
T 2j37_W 252 GHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNELKLDDNEALIE--KLKHGQFTL 329 (504)
T ss_dssp SCCCCTHHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTTTTCCCTTTTT--SCTTSGGGG
T ss_pred cccchHHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHHHHHHHHHHHH--HHhcCCCCH
Confidence 874322 122222221 111244567789999999 999999998772111111111 111211 01
Q ss_pred hHHHHHHHHH---HHHhhcCCCCCceEE--EEEEEEEecCCCeeEEEEEEE----EeeCCce-eEEeecCChHHHHHHHH
Q 014942 302 RFFVGEIIRE---KIFMQYRNEVPYACQ--VNVVSYKTRPTAKDFIQVEIV----VEKNSQK-IILIGKGGKALKLLATA 371 (415)
Q Consensus 302 ~~~i~eiire---ki~~~~~~eipys~~--v~i~~~~~~~~~~~~i~~~~~----~~r~~q~-~iiiG~~g~~i~~i~~~ 371 (415)
..+..++... --+..+-..+|+.+. +....+...+.....+.+.+. .||.+|+ ..+||++|+++++|+.-
T Consensus 330 ~d~~~~l~~~~~~G~~~~~~~~ipg~~~~~~~~~~~~~~~~~~~~~~~ii~smt~~Er~~~~~p~~~~~~~sr~~ria~g 409 (504)
T 2j37_W 330 RDMYEQFQNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVARG 409 (504)
T ss_dssp CCCHHHHHHCCCCCCCCSSCCCCSCCSCGGGCSCCCCCHHHHHHHHHHHHTTSCHHHHHCTTHHHHHHHCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHhccccchhhccccccccChHhhhhhHHHHHhCCHHHhcCCCCCcccCCChHHHHHHHHh
Confidence 1112222110 011123357888654 321111111111222333344 6888888 89999999999999999
Q ss_pred HHH---HHHHHhC
Q 014942 372 ARL---DIEDFLQ 381 (415)
Q Consensus 372 ar~---~l~~~~~ 381 (415)
|.. ++.+++.
T Consensus 410 sg~~~~~v~~ll~ 422 (504)
T 2j37_W 410 SGVSTRDVQELLT 422 (504)
T ss_dssp TTCCHHHHHHHHH
T ss_pred cCCCHHHHHHHHH
Confidence 875 6666654
No 200
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.43 E-value=4.8e-14 Score=139.14 Aligned_cols=190 Identities=18% Similarity=0.129 Sum_probs=96.6
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCC-----------------eeEEEEeCCCCchh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE-----------------YQMILYDTPGIIEK 176 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~-----------------~~l~liDtpG~~~~ 176 (415)
...+|+|+|.||||||||+|+|++..+ .++.+|++|..+..+.+...+ ..+.+|||||+...
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~-~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~ 99 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQA-SAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKG 99 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC--------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC----
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCc-cccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccc
Confidence 345899999999999999999999886 578889999877776655443 25999999998532
Q ss_pred hhhhHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHHHHHHHhhcCC
Q 014942 177 KIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTD 256 (415)
Q Consensus 177 ~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~ 256 (415)
. .....+...+..+++.+|++++|+|+++.. .+... .. ...| +|++|....+-.....+.+.....
T Consensus 100 a--s~~~glg~~~l~~ir~aD~Il~VvD~~~~~-----~i~~v-~~--~~dP----~~di~~i~~El~l~d~~~~~k~~~ 165 (396)
T 2ohf_A 100 A--HNGQGLGNAFLSHISACDGIFHLTRAFEDD-----DITHV-EG--SVDP----IRDIEIIHEELQLKDEEMIGPIID 165 (396)
T ss_dssp ---------CCHHHHHHHTSSSEEEEEEC--------------------CTT----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred c--chhhHHHHHHHHHHHhcCeEEEEEecCCCc-----chhhh-cC--CCCh----HHHHHHhhhhhhhhhHHHHHHhhh
Confidence 2 112222234566789999999999997421 11111 11 1233 455554432222212222222111
Q ss_pred CccEEEcc--cCCCCCHHHHHHHHHhhCCCC-CCC--CCCCCccccCCchhHHHHHHHHHHHHhhcCCCCCceEEEE
Q 014942 257 VDEVIPVS--AKYGHGVEDIRDWILTKLPLG-PAY--YPKFQDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVN 328 (415)
Q Consensus 257 ~~~i~~vS--A~~g~gv~eL~~~L~~~l~~~-~~~--~~~~~~~~t~~~~~~~i~eiireki~~~~~~eipys~~v~ 328 (415)
.......| ++.+.+..++++.+...++++ ++. ++. .+ ... .+++ ++++......++|.+.+.
T Consensus 166 ~~~k~~~~~g~~~~~~~~~ll~~i~~~L~e~~~~~~~~~~----~~---~~e--~e~i-~~~~llt~KPviy~~Nv~ 232 (396)
T 2ohf_A 166 KLEKVAVRGGDKKLKPEYDIMCKVKSWVIDQKKPVRFYHD----WN---DKE--IEVL-NKHLFLTSKPMVYLVNLS 232 (396)
T ss_dssp TTCSCC--------CCHHHHHHHHHHHTTC--CCGGGCCC----CC---HHH--HHHH-HHHCCGGGSCEEEEEECC
T ss_pred hhhhhhhcccchhhhhHHHHHHHHHHHHHhcCcchhhccc----CC---HHH--HHHH-HHHHHHhCCceEEEEEec
Confidence 12223344 577889999999999999887 543 221 11 111 2445 567777889999988664
No 201
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.42 E-value=3.2e-13 Score=132.69 Aligned_cols=87 Identities=22% Similarity=0.284 Sum_probs=62.2
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeC---------------------CCeeEEEEeCCCCc
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG---------------------PEYQMILYDTPGII 174 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~---------------------~~~~l~liDtpG~~ 174 (415)
.+|+++|.||||||||+|+|++.. ..+...|++|..+..+.... .+..+.+|||||+.
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~-~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~ 80 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRAN-ALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLV 80 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHH-TTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-CcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCcc
Confidence 379999999999999999999875 33566777776555554432 23479999999985
Q ss_pred hhhh--hhHhHHHHHHHHhhhcccceEEEEecCCC
Q 014942 175 EKKI--HMLDSMMMKNVRSAGINADCIVVLVDACK 207 (415)
Q Consensus 175 ~~~~--~~l~~~~~~~~~~~~~~aD~ii~VvD~~~ 207 (415)
.... ..+. ..+...++.+|++++|+|+++
T Consensus 81 ~~a~~~~~lg----~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 81 KGAHKGEGLG----NQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCCSSSCTT----HHHHHHHHTCSEEEEEEECCC
T ss_pred ccccccchHH----HHHHHHHHhCCEEEEEEECCC
Confidence 3211 1232 233445789999999999975
No 202
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.41 E-value=7.8e-14 Score=151.09 Aligned_cols=115 Identities=22% Similarity=0.262 Sum_probs=78.2
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCC---------------CCceEEeEEE--EEe--------------CCC
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNK---------------PQTTRHRILG--ICS--------------GPE 162 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~---------------~~tt~~~~~~--~~~--------------~~~ 162 (415)
+..+|+|+|++|+|||||+++|++....+.+.. .+.|...... .+. ..+
T Consensus 18 ~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~ 97 (842)
T 1n0u_A 18 NVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNS 97 (842)
T ss_dssp GEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSE
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCC
Confidence 445899999999999999999986532222111 1122111111 111 236
Q ss_pred eeEEEEeCCCCchhhhhhHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCC
Q 014942 163 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI 239 (415)
Q Consensus 163 ~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~ 239 (415)
..+.||||||+.+ +. ..+..+++.+|++|+|+|++++.......++..... .+.|+++|+||+|+.
T Consensus 98 ~~i~liDTPG~~d--f~-------~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~--~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 98 FLINLIDSPGHVD--FS-------SEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG--ERIKPVVVINKVDRA 163 (842)
T ss_dssp EEEEEECCCCCCS--SC-------HHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH--TTCEEEEEEECHHHH
T ss_pred ceEEEEECcCchh--hH-------HHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH--cCCCeEEEEECCCcc
Confidence 7899999999643 32 234556789999999999999876666655544444 679999999999986
No 203
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.38 E-value=8.1e-13 Score=120.62 Aligned_cols=57 Identities=26% Similarity=0.300 Sum_probs=42.1
Q ss_pred CCCEEEEEeCCCCCChh--HHHHHHHHHhhcCCCccEEEcccCCCCCHHHHHHHHHhhC
Q 014942 226 KLPILLVLNKKDLIKPG--EIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKL 282 (415)
Q Consensus 226 ~~piilV~NK~Dl~~~~--~~~~~~~~~~~~~~~~~i~~vSA~~g~gv~eL~~~L~~~l 282 (415)
..|.++|+||+|+.... ........+.......+++++||++|.|+++++++|.+.+
T Consensus 164 ~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~ 222 (226)
T 2hf9_A 164 KTADLIVINKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSV 222 (226)
T ss_dssp TTCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred hcCCEEEEeccccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHH
Confidence 46789999999986432 2333444444433446899999999999999999998765
No 204
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.34 E-value=6.5e-12 Score=124.95 Aligned_cols=191 Identities=17% Similarity=0.154 Sum_probs=115.4
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCc----eeeeeCCCCceEEeEEEEEeCCC-eeEEEEeCCCCchhhhhhHhHHHHHH
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQK----LSIVTNKPQTTRHRILGICSGPE-YQMILYDTPGIIEKKIHMLDSMMMKN 188 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~----~~~~~~~~~tt~~~~~~~~~~~~-~~l~liDtpG~~~~~~~~l~~~~~~~ 188 (415)
+.+.++|+|++|+|||||+|.|.|.. ..+......+|+..+ +..... ..+.++|+||+.. ....+...+ +.
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~--v~q~~~~~~ltv~D~~g~~~-~~~~~~~~L-~~ 143 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERH--PYKHPNIPNVVFWDLPGIGS-TNFPPDTYL-EK 143 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCE--EEECSSCTTEEEEECCCGGG-SSCCHHHHH-HH
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEE--eccccccCCeeehHhhcccc-hHHHHHHHH-HH
Confidence 44589999999999999999999842 222222222332211 222222 2689999999743 222222222 11
Q ss_pred HHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCC------------ChhHHHHHHHHHh----
Q 014942 189 VRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI------------KPGEIAKKLEWYE---- 252 (415)
Q Consensus 189 ~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~------------~~~~~~~~~~~~~---- 252 (415)
. .+...+..++ ++... .+.....+...+.. .+.|+++|.||.|+. ....+......+.
T Consensus 144 ~--~L~~~~~~~~-lS~G~-~~kqrv~la~aL~~--~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l 217 (413)
T 1tq4_A 144 M--KFYEYDFFII-ISATR-FKKNDIDIAKAISM--MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTF 217 (413)
T ss_dssp T--TGGGCSEEEE-EESSC-CCHHHHHHHHHHHH--TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHH
T ss_pred c--CCCccCCeEE-eCCCC-ccHHHHHHHHHHHh--cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHH
Confidence 1 1344455555 66644 35555566666655 578999999999974 2223333333332
Q ss_pred -hc-CCCccEEEccc--CCCCCHHHHHHHHHhhCCCCCCCCC-----CCCccccCCchhHHHHHHHHHHHHh
Q 014942 253 -KF-TDVDEVIPVSA--KYGHGVEDIRDWILTKLPLGPAYYP-----KFQDIVSEHPERFFVGEIIREKIFM 315 (415)
Q Consensus 253 -~~-~~~~~i~~vSA--~~g~gv~eL~~~L~~~l~~~~~~~~-----~~~~~~t~~~~~~~i~eiireki~~ 315 (415)
.. .....++++|+ ..+.|+++|.+.|.+.+|++++.++ . ....+.+..+....+.+++..+.
T Consensus 218 ~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~~~~~~~~l~~-~~~~~~e~k~~~~~~~i~~~a~~ 288 (413)
T 1tq4_A 218 RENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYKRHNFMVSLPN-ITDSVIEKKRQFLKQRIWLEGFA 288 (413)
T ss_dssp HHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGGHHHHHHHSCC-CSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccchhhHHHHhccc-chHHHHHHHHHHHHHHHHHHHHH
Confidence 22 23457899999 6677899999999999999987773 2 01223344556677777776654
No 205
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.31 E-value=5.6e-14 Score=138.57 Aligned_cols=149 Identities=22% Similarity=0.229 Sum_probs=96.5
Q ss_pred cEEEEEecCCCCHHHHHHHHhCC-----ceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhh--hhhHhHHHHHH
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQ-----KLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK--IHMLDSMMMKN 188 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~-----~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~--~~~l~~~~~~~ 188 (415)
.+|+++|.+|+|||||+|+|++. ....++..|+||+......+.. .+.++||||+.... ...+.......
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~liDtPG~~~~~~~~~~l~~~~l~~ 239 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLES---GATLYDTPGIINHHQMAHFVDARDLKI 239 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECST---TCEEEECCSCCCCSSGGGGSCTTTHHH
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeCC---CeEEEeCCCcCcHHHHHHHHhHHHHHH
Confidence 47999999999999999999986 4556789999998876544332 48999999986432 11121111111
Q ss_pred HHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHHHHHHHhhcCCCccEEEcccCCC
Q 014942 189 VRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYG 268 (415)
Q Consensus 189 ~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g 268 (415)
.. .....+.++|++++..............+.. .+.|+++++||+|..+........+.+.+..+. .+.+.++...
T Consensus 240 ~~-~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~~--~~~~~~~v~~k~d~~~~~~~~~~~~~~~~~~g~-~l~p~~~~~~ 315 (369)
T 3ec1_A 240 IT-PKREIHPRVYQLNEGQTLFFGGLARLDYIKG--GRRSFVCYMANELTVHRTKLEKADSLYANQLGE-LLSPPSKRYA 315 (369)
T ss_dssp HS-CSSCCCCEEEEECTTEEEEETTTEEEEEEES--SSEEEEEEECTTSCEEEEEGGGHHHHHHHHBTT-TBCSSCGGGT
T ss_pred Hh-cccccCceEEEEcCCceEEECCEEEEEEccC--CCceEEEEecCCcccccccHHHHHHHHHHhcCC-ccCCCCchhh
Confidence 10 1167899999999853211000001222333 578999999999998766666666666665543 5666666654
Q ss_pred CCH
Q 014942 269 HGV 271 (415)
Q Consensus 269 ~gv 271 (415)
.++
T Consensus 316 ~~~ 318 (369)
T 3ec1_A 316 AEF 318 (369)
T ss_dssp TTC
T ss_pred hhc
Confidence 444
No 206
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.30 E-value=1.1e-13 Score=136.27 Aligned_cols=144 Identities=23% Similarity=0.223 Sum_probs=90.9
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCc------eeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhh--hhhHhHHHHH
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQK------LSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK--IHMLDSMMMK 187 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~------~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~--~~~l~~~~~~ 187 (415)
.+|+++|.+|+|||||+|+|++.. ...++..|+||+......+.. .+.++||||+.... ...+......
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~liDtPG~~~~~~~~~~l~~~~l~ 237 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDE---ESSLYDTPGIINHHQMAHYVGKQSLK 237 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSS---SCEEEECCCBCCTTSGGGGSCHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecC---CeEEEeCCCcCcHHHHHHHhhHHHHH
Confidence 479999999999999999999753 444789999998876644333 48999999986432 1122222211
Q ss_pred HHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHHHHHHHhhcCCCccEEEcccC
Q 014942 188 NVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAK 266 (415)
Q Consensus 188 ~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~ 266 (415)
.. ......+.++|++|+..............+.. .+.|+++|+||+|..+........+.+.+..+. .+.+.++.
T Consensus 238 ~~-~~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~~--~~~~~~~v~nk~d~~~~~~~~~~~~~~~~~~g~-~l~p~~~~ 312 (368)
T 3h2y_A 238 LI-TPTKEIKPMVFQLNEEQTLFFSGLARFDYVSG--GRRAFTCHFSNRLTIHRTKLEKADELYKNHAGD-LLSPPTPE 312 (368)
T ss_dssp HH-SCSSCCCCEEEEECTTEEEEETTTEEEEEEES--SSEEEEEEECTTSCEEEEEHHHHHHHHHHHBTT-TBCSSCHH
T ss_pred Hh-ccccccCceEEEEcCCCEEEEcceEEEEEecC--CCceEEEEecCccccccccHHHHHHHHHHHhCC-ccCCCchh
Confidence 11 11367889999999843211101011222333 578999999999998877777777777765553 45666654
No 207
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.24 E-value=2.1e-13 Score=134.77 Aligned_cols=183 Identities=21% Similarity=0.187 Sum_probs=114.0
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCC-----------------eeEEEEeCCCCchh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE-----------------YQMILYDTPGIIEK 176 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~-----------------~~l~liDtpG~~~~ 176 (415)
+..+|+|+|+||||||||+|+|++...+.++.+|++|..+..+.+...+ ..+.+|||||+...
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~ 98 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG 98 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccC
Confidence 3458999999999999999999998875688999999888777665554 46899999997532
Q ss_pred h--hhhHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCC------CChh------
Q 014942 177 K--IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDL------IKPG------ 242 (415)
Q Consensus 177 ~--~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl------~~~~------ 242 (415)
. ...+.. .+...++.+|++++|+|+... .+++.|.+++|- .+..
T Consensus 99 ~s~~e~L~~----~fl~~ir~~d~il~Vvd~~~d------------------~~i~~v~~~~dP~~di~ildeel~~~D~ 156 (392)
T 1ni3_A 99 ASTGVGLGN----AFLSHVRAVDAIYQVVRAFDD------------------AEIIHVEGDVDPIRDLSIIVDELLIKDA 156 (392)
T ss_dssp CCSSSSSCH----HHHHHHTTCSEEEEEEECCCT------------------TCSSCCSSSSCHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHH----HHHHHHHHHHHHHHHHhcccc------------------ceeeeeccccCcchhhhhchhhhHHHHH
Confidence 1 111222 234557899999999998651 122223444442 1110
Q ss_pred -HHHHHHHHHhhc-CCCccEEEcccCCCCCHHHHHHHHHhhCCCC-CCCCCCCCccccCCchhHHHHHHHHHHHHhhcCC
Q 014942 243 -EIAKKLEWYEKF-TDVDEVIPVSAKYGHGVEDIRDWILTKLPLG-PAYYPKFQDIVSEHPERFFVGEIIREKIFMQYRN 319 (415)
Q Consensus 243 -~~~~~~~~~~~~-~~~~~i~~vSA~~g~gv~eL~~~L~~~l~~~-~~~~~~~~~~~t~~~~~~~i~eiireki~~~~~~ 319 (415)
.+......+... ......+ + ++.+.++.++++.+.+.+..+ +..++ ..+++. + .+++| +++.....
T Consensus 157 ~~~~k~~~~l~~~~~~~g~ti-~-sh~~~~~~~l~~~i~~~L~~G~~~~~~---~~~~~~-e----~e~i~-~~~~lt~k 225 (392)
T 1ni3_A 157 EFVEKHLEGLRKITSRGANTL-E-MKAKKEEQAIIEKVYQYLTETKQPIRK---GDWSNR-E----VEIIN-SLYLLTAK 225 (392)
T ss_dssp HHHHHHHHHHHHTTCCSSCSS-S-HHHHHHHHHHHHHHHHHHHTTCSCGGG---SCCCHH-H----HHHHH-TTCCGGGS
T ss_pred HHHHHHHHHHHHHHHhcCCcc-c-cccHHHHHHHHHHHHHHhccCCceeec---CCCCHH-H----HHHHH-HHhhhccC
Confidence 011111122211 1000000 1 566778899999999888887 65543 222322 2 25666 66667788
Q ss_pred CCCceEEEEE
Q 014942 320 EVPYACQVNV 329 (415)
Q Consensus 320 eipys~~v~i 329 (415)
.+||.+.+..
T Consensus 226 p~~y~~Nv~e 235 (392)
T 1ni3_A 226 PVIYLVNMSE 235 (392)
T ss_dssp CEEEEEECCH
T ss_pred ceEEEEEecc
Confidence 8888886543
No 208
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.22 E-value=2.1e-11 Score=118.01 Aligned_cols=76 Identities=17% Similarity=0.176 Sum_probs=53.2
Q ss_pred EEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhcccceEEEEecCCC---------CC---chHHHHHHHHhccc
Q 014942 156 GICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACK---------AP---ERIDEILEEGVGDH 223 (415)
Q Consensus 156 ~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~---------~~---~~~~~~l~~~l~~~ 223 (415)
..+..++..+.+|||+| ++.++ ..+..++++++++|||+|.++ .. .....++..++...
T Consensus 154 ~~~~~~~v~l~iwDtaG--Qe~~R-------~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~ 224 (340)
T 4fid_A 154 YDFVVKDIPFHLIDVGG--QRSER-------KXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNE 224 (340)
T ss_dssp EEEESSSCEEEEEECCS--CHHHH-------HHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCG
T ss_pred EEEEeeeeeeccccCCC--ccccc-------ccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhh
Confidence 34556778999999999 44433 447778999999999999972 12 22334444444321
Q ss_pred -CCCCCEEEEEeCCCCCC
Q 014942 224 -KDKLPILLVLNKKDLIK 240 (415)
Q Consensus 224 -~~~~piilV~NK~Dl~~ 240 (415)
..+.|++|++||+|+..
T Consensus 225 ~~~~~piiLv~NK~DL~~ 242 (340)
T 4fid_A 225 FLKGAVKLIFLNKMDLFE 242 (340)
T ss_dssp GGTTSEEEEEEECHHHHH
T ss_pred ccCCCeEEEEEECchhhh
Confidence 26789999999999853
No 209
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.19 E-value=1.7e-10 Score=114.71 Aligned_cols=146 Identities=13% Similarity=0.202 Sum_probs=85.9
Q ss_pred EEEEEecCCCCHHHHHHHHhCCceee---eeCCCCceEEeEEEEEeCCC--eeEEEEeCCCCchhh-----hhhHhHHHH
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQKLSI---VTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKK-----IHMLDSMMM 186 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~~~~~---~~~~~~tt~~~~~~~~~~~~--~~l~liDtpG~~~~~-----~~~l~~~~~ 186 (415)
.++|+|++|+|||||+|.|+|..+.. ....++.++..+..+....+ ..+.++|++|+.... +..+...+.
T Consensus 44 ~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~ 123 (427)
T 2qag_B 44 NILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFID 123 (427)
T ss_dssp EEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHHH
Confidence 39999999999999999999975421 12234455554444444333 268999999985321 111111122
Q ss_pred HHH----Hhh---------hcccc---eEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHHHHHH
Q 014942 187 KNV----RSA---------GINAD---CIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEW 250 (415)
Q Consensus 187 ~~~----~~~---------~~~aD---~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~~~~~ 250 (415)
..+ ..+ ..+++ +++|++|+.++....+..+...+. .+.|+|+|+||+|...+.++......
T Consensus 124 ~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~---~~~~vI~Vi~KtD~Lt~~E~~~l~~~ 200 (427)
T 2qag_B 124 AQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD---SKVNIIPIIAKADAISKSELTKFKIK 200 (427)
T ss_dssp HHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC---SCSEEEEEESCGGGSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh---hCCCEEEEEcchhccchHHHHHHHHH
Confidence 211 111 12233 477788888888888777766664 57899999999999988777666555
Q ss_pred Hhh--cCCCccEEEccc
Q 014942 251 YEK--FTDVDEVIPVSA 265 (415)
Q Consensus 251 ~~~--~~~~~~i~~vSA 265 (415)
+.. .....+++.+|.
T Consensus 201 I~~~L~~~gi~I~~is~ 217 (427)
T 2qag_B 201 ITSELVSNGVQIYQFPT 217 (427)
T ss_dssp HHHHHBTTBCCCCCCC-
T ss_pred HHHHHHHcCCcEEecCC
Confidence 543 112345666664
No 210
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.15 E-value=1.5e-10 Score=111.61 Aligned_cols=118 Identities=14% Similarity=0.088 Sum_probs=77.2
Q ss_pred EEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhcccceEEEEecCC-------C--CC---chHHHHHHHHhccc-
Q 014942 157 ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDAC-------K--AP---ERIDEILEEGVGDH- 223 (415)
Q Consensus 157 ~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~-------~--~~---~~~~~~l~~~l~~~- 223 (415)
.+..++..+.+|||+| ++.++ ..+..++++++++|||+|.+ + .. .....++..++...
T Consensus 161 ~~~~~~v~l~iwDtgG--Qe~~R-------~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~ 231 (327)
T 3ohm_A 161 PFDLQSVIFRMVDVGG--QRSER-------RKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPW 231 (327)
T ss_dssp EEEETTEEEEEEEECC--SHHHH-------TTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGG
T ss_pred EEEeeceeeEEEEcCC--chhHH-------HHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhc
Confidence 3455678999999999 44433 34677899999999999765 1 11 22334444444321
Q ss_pred CCCCCEEEEEeCCCCCChh------------------HHHHHHHHH----hh----cCCCccEEEcccCCCCCHHHHHHH
Q 014942 224 KDKLPILLVLNKKDLIKPG------------------EIAKKLEWY----EK----FTDVDEVIPVSAKYGHGVEDIRDW 277 (415)
Q Consensus 224 ~~~~piilV~NK~Dl~~~~------------------~~~~~~~~~----~~----~~~~~~i~~vSA~~g~gv~eL~~~ 277 (415)
..+.|++|++||+|+.... ..++....+ .. ......+++|||+++.||+.+|..
T Consensus 232 ~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~ 311 (327)
T 3ohm_A 232 FQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAA 311 (327)
T ss_dssp GTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHH
T ss_pred cCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHH
Confidence 2579999999999985322 222222222 11 112235688999999999999999
Q ss_pred HHhhCC
Q 014942 278 ILTKLP 283 (415)
Q Consensus 278 L~~~l~ 283 (415)
+.+.+.
T Consensus 312 v~~~Il 317 (327)
T 3ohm_A 312 VKDTIL 317 (327)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887653
No 211
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.03 E-value=5.4e-10 Score=106.97 Aligned_cols=135 Identities=19% Similarity=0.257 Sum_probs=84.4
Q ss_pred HHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhcccceEEEEecCCCCC
Q 014942 130 TLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP 209 (415)
Q Consensus 130 SLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~ 209 (415)
+|+++++...+.. ..+..|..+.+......++ .+.+||| ++.+..+. ..+++++|++|+|+|++++.
T Consensus 32 sl~~~~~~~~f~~-~~~~pTiGd~~~~~~~~~~-~~~iwD~----qer~~~l~-------~~~~~~ad~vilV~D~~~~~ 98 (301)
T 1u0l_A 32 ERILCKLRGKFRL-QNLKIYVGDRVEYTPDETG-SGVIENV----LHRKNLLT-------KPHVANVDQVILVVTVKMPE 98 (301)
T ss_dssp CEEEEEECGGGTT-TTCCCCTTCEEEEECCCSS-SEEEEEE----CCCSCEET-------TTTEESCCEEEEEECSSTTC
T ss_pred cEEEEEEcccccc-cCCCCCCccEEEEEEcCCC-eEEEEEE----ccccceee-------ccccccCCEEEEEEeCCCCC
Confidence 5777776655530 1122222232222222223 8999999 34555443 35689999999999998764
Q ss_pred ---chHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHHHHHHHhhcCCCccEEEcccCCCCCHHHHHHHHHh
Q 014942 210 ---ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILT 280 (415)
Q Consensus 210 ---~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gv~eL~~~L~~ 280 (415)
.....|+. .++. .+.|+++|+||+|+.+...+.+..+.........++++|||++|.|+++++..+..
T Consensus 99 ~s~~~l~~~l~-~~~~--~~~piilv~NK~DL~~~~~v~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 99 TSTYIIDKFLV-LAEK--NELETVMVINKMDLYDEDDLRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp CCHHHHHHHHH-HHHH--TTCEEEEEECCGGGCCHHHHHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSS
T ss_pred CCHHHHHHHHH-HHHH--CCCCEEEEEeHHHcCCchhHHHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcC
Confidence 23344443 3344 57999999999999876543222222222111158999999999999999998864
No 212
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.02 E-value=1.5e-09 Score=102.15 Aligned_cols=131 Identities=18% Similarity=0.294 Sum_probs=77.5
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCceeeee-------CCCCceEEeEEEEEeC-C--CeeEEEEeCCCCchhhh-----hh
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVT-------NKPQTTRHRILGICSG-P--EYQMILYDTPGIIEKKI-----HM 180 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~~~~~~-------~~~~tt~~~~~~~~~~-~--~~~l~liDtpG~~~~~~-----~~ 180 (415)
..++|+|++|+|||||+|.|+|....... ..+.++.....+.+.. . ...+.++|+||+..... ..
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~ 82 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEP 82 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHH
Confidence 47999999999999999999875432111 1122222112222211 1 12689999999843111 12
Q ss_pred HhHHHHHHHHh--------------hhcccceEEEEecCC-CCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHH
Q 014942 181 LDSMMMKNVRS--------------AGINADCIVVLVDAC-KAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA 245 (415)
Q Consensus 181 l~~~~~~~~~~--------------~~~~aD~ii~VvD~~-~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~ 245 (415)
+...+...... .+..++++++++|.. ++....+..+...+.. . .++|+|+||+|.....++.
T Consensus 83 i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~--~-~~vI~Vi~K~D~lt~~e~~ 159 (270)
T 3sop_A 83 IEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSK--V-VNIIPVIAKADTMTLEEKS 159 (270)
T ss_dssp HHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHT--T-SEEEEEETTGGGSCHHHHH
T ss_pred HHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHh--c-CcEEEEEeccccCCHHHHH
Confidence 22222222211 123468889999964 7777777766666655 4 8999999999999876655
Q ss_pred HHHH
Q 014942 246 KKLE 249 (415)
Q Consensus 246 ~~~~ 249 (415)
....
T Consensus 160 ~~k~ 163 (270)
T 3sop_A 160 EFKQ 163 (270)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 213
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.00 E-value=2.1e-10 Score=111.98 Aligned_cols=118 Identities=14% Similarity=0.099 Sum_probs=79.9
Q ss_pred EEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhcccceEEEEecCCCC------------CchHHHHHHHHhcc-c
Q 014942 157 ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKA------------PERIDEILEEGVGD-H 223 (415)
Q Consensus 157 ~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~------------~~~~~~~l~~~l~~-~ 223 (415)
.+..++..+.+|||+| +..++.+ +..++++++++|||+|.++. ......++..++.. .
T Consensus 187 ~~~~~~~~l~iwDt~G--Qe~~r~~-------w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~ 257 (353)
T 1cip_A 187 HFTFKDLHFKMFDVGG--QRSERKK-------WIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKW 257 (353)
T ss_dssp EEEETTEEEEEEEECC--SGGGGGG-------GGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGG
T ss_pred EEeeCCeeEEEEeCCC--chhhhHH-------HHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCcc
Confidence 3455678999999999 4444433 56678999999999999863 12333444444432 1
Q ss_pred CCCCCEEEEEeCCCCCChh-----------------HHHHHHHHHh----hc-----CCCccEEEcccCCCCCHHHHHHH
Q 014942 224 KDKLPILLVLNKKDLIKPG-----------------EIAKKLEWYE----KF-----TDVDEVIPVSAKYGHGVEDIRDW 277 (415)
Q Consensus 224 ~~~~piilV~NK~Dl~~~~-----------------~~~~~~~~~~----~~-----~~~~~i~~vSA~~g~gv~eL~~~ 277 (415)
..+.|+|||+||+|+.... ...+....+. .. .....+++|||++|.||.++|++
T Consensus 258 ~~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~ 337 (353)
T 1cip_A 258 FTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDA 337 (353)
T ss_dssp GTTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHH
T ss_pred ccCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHH
Confidence 2579999999999985221 1222222222 11 23357899999999999999999
Q ss_pred HHhhCC
Q 014942 278 ILTKLP 283 (415)
Q Consensus 278 L~~~l~ 283 (415)
+.+.+.
T Consensus 338 v~~~i~ 343 (353)
T 1cip_A 338 VTDVII 343 (353)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 987653
No 214
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=98.90 E-value=8.1e-10 Score=108.25 Aligned_cols=117 Identities=15% Similarity=0.053 Sum_probs=75.5
Q ss_pred EEeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhcccceEEEEecCCCC------------CchHHHHHHHHhcc-c
Q 014942 157 ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKA------------PERIDEILEEGVGD-H 223 (415)
Q Consensus 157 ~~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~------------~~~~~~~l~~~l~~-~ 223 (415)
.+..++..+.+|||+|. ..+. ..+..++.+++++|||+|.++. ......++..++.. .
T Consensus 195 ~~~~~~~~l~i~Dt~Gq--~~~r-------~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~ 265 (362)
T 1zcb_A 195 DFEIKNVPFKMVDVGGQ--RSER-------KRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRV 265 (362)
T ss_dssp EEEETTEEEEEEEECC----------------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGG
T ss_pred EeeeCCeEEEEEeccch--hhhh-------hhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchh
Confidence 34556789999999994 3332 3466778999999999999872 12333444444433 1
Q ss_pred CCCCCEEEEEeCCCCCCh------------------hHHHHHHHHH----hhc-----CCCccEEEcccCCCCCHHHHHH
Q 014942 224 KDKLPILLVLNKKDLIKP------------------GEIAKKLEWY----EKF-----TDVDEVIPVSAKYGHGVEDIRD 276 (415)
Q Consensus 224 ~~~~piilV~NK~Dl~~~------------------~~~~~~~~~~----~~~-----~~~~~i~~vSA~~g~gv~eL~~ 276 (415)
..+.|+|||+||+|+... ....+....+ ... .....+++|||++|.||+++|+
T Consensus 266 ~~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~ 345 (362)
T 1zcb_A 266 FSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFR 345 (362)
T ss_dssp GTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHH
T ss_pred hCCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHH
Confidence 257899999999998521 1122222222 111 1234678999999999999999
Q ss_pred HHHhhC
Q 014942 277 WILTKL 282 (415)
Q Consensus 277 ~L~~~l 282 (415)
++.+.+
T Consensus 346 ~v~~~i 351 (362)
T 1zcb_A 346 DVKDTI 351 (362)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998754
No 215
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=98.85 E-value=3.3e-09 Score=104.93 Aligned_cols=116 Identities=9% Similarity=0.093 Sum_probs=77.1
Q ss_pred EeCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhcccceEEEEecCCC----------CC--chHHHHHHHHhcc-cC
Q 014942 158 CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACK----------AP--ERIDEILEEGVGD-HK 224 (415)
Q Consensus 158 ~~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~----------~~--~~~~~~l~~~l~~-~~ 224 (415)
+..++..+.+|||+| ++.+..+ +..++++++++|||+|.++ .. .....++..+... ..
T Consensus 212 ~~~~~v~l~iwDtaG--Qe~~r~~-------w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~ 282 (402)
T 1azs_C 212 FQVDKVNFHMFDVGG--QRDERRK-------WIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWL 282 (402)
T ss_dssp EEETTEEEEEEEECC--SGGGGGG-------GGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTC
T ss_pred eecCCccceecccch--hhhhhhh-------hHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccC
Confidence 445678999999999 4554443 5667899999999999986 21 3334455555443 12
Q ss_pred CCCCEEEEEeCCCCCChhH--------------------------------HHHHHHHH----hhc-------CCCccEE
Q 014942 225 DKLPILLVLNKKDLIKPGE--------------------------------IAKKLEWY----EKF-------TDVDEVI 261 (415)
Q Consensus 225 ~~~piilV~NK~Dl~~~~~--------------------------------~~~~~~~~----~~~-------~~~~~i~ 261 (415)
.+.|++||+||+|+..... .......+ ... .....++
T Consensus 283 ~~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~ 362 (402)
T 1azs_C 283 RTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPH 362 (402)
T ss_dssp SSCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEE
T ss_pred CCCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEE
Confidence 5789999999999843211 11111111 111 0123567
Q ss_pred EcccCCCCCHHHHHHHHHhhC
Q 014942 262 PVSAKYGHGVEDIRDWILTKL 282 (415)
Q Consensus 262 ~vSA~~g~gv~eL~~~L~~~l 282 (415)
+|||+++.||+++|.++.+.+
T Consensus 363 ~TSA~d~~nV~~vF~~v~~~I 383 (402)
T 1azs_C 363 FTCAVDTENIRRVFNDCRDII 383 (402)
T ss_dssp ECCTTCHHHHHHHHHHHHHHH
T ss_pred EEEeecCcCHHHHHHHHHHHH
Confidence 999999999999999987654
No 216
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.85 E-value=5.3e-10 Score=105.95 Aligned_cols=59 Identities=31% Similarity=0.463 Sum_probs=38.8
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCch
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIE 175 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~ 175 (415)
+..+|+++|.||||||||+|+|++.+...++..|++|++...... +..+.++||||+..
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~---~~~~~l~DtpG~~~ 177 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKV---GKELELLDTPGILW 177 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEE---TTTEEEEECCCCCC
T ss_pred CCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEEEe---CCCEEEEECcCcCC
Confidence 446899999999999999999999987788999999987653322 33789999999864
No 217
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=98.83 E-value=2.7e-09 Score=104.22 Aligned_cols=113 Identities=16% Similarity=0.147 Sum_probs=72.3
Q ss_pred CCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhcccceEEEEecCC----------CCC--chHHHHHHHHhccc-CCCC
Q 014942 161 PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDAC----------KAP--ERIDEILEEGVGDH-KDKL 227 (415)
Q Consensus 161 ~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~----------~~~--~~~~~~l~~~l~~~-~~~~ 227 (415)
....+.+|||+| ++.+..+ +..++++++++|+|+|.+ +.. .....++..+.... ..+.
T Consensus 181 ~~v~l~iwDtaG--Qe~~r~~-------~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~ 251 (354)
T 2xtz_A 181 SGEVYRLFDVGG--QRNERRK-------WIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKT 251 (354)
T ss_dssp ---EEEEEEECC--STTGGGG-------TGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSC
T ss_pred cceeeEEEECCC--chhhhHH-------HHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCC
Confidence 457899999999 4555443 566789999999999986 211 23334444444321 2578
Q ss_pred CEEEEEeCCCCCChh-----------------------HHHHHHHHHhh----c----------CCCccEEEcccCCCCC
Q 014942 228 PILLVLNKKDLIKPG-----------------------EIAKKLEWYEK----F----------TDVDEVIPVSAKYGHG 270 (415)
Q Consensus 228 piilV~NK~Dl~~~~-----------------------~~~~~~~~~~~----~----------~~~~~i~~vSA~~g~g 270 (415)
|++||+||+|+.... ...+....+.. . .....+++|||++|.|
T Consensus 252 piiLvgNK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~n 331 (354)
T 2xtz_A 252 SFMLFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKL 331 (354)
T ss_dssp EEEEEEECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHH
T ss_pred eEEEEEECcchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchh
Confidence 999999999984221 11222222121 0 1223468999999999
Q ss_pred HHHHHHHHHhhC
Q 014942 271 VEDIRDWILTKL 282 (415)
Q Consensus 271 v~eL~~~L~~~l 282 (415)
|+++|+++.+.+
T Consensus 332 V~~vF~~v~~~I 343 (354)
T 2xtz_A 332 VKKTFKLVDETL 343 (354)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988654
No 218
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=98.76 E-value=2.8e-08 Score=88.80 Aligned_cols=100 Identities=11% Similarity=0.044 Sum_probs=68.1
Q ss_pred HHHHHHhhhcccceEEEEecCCCCC-chHHHHH---HHHhccc--CCCCCEEEEEeCC-CCCChhHHHHHHHHHh--hcC
Q 014942 185 MMKNVRSAGINADCIVVLVDACKAP-ERIDEIL---EEGVGDH--KDKLPILLVLNKK-DLIKPGEIAKKLEWYE--KFT 255 (415)
Q Consensus 185 ~~~~~~~~~~~aD~ii~VvD~~~~~-~~~~~~l---~~~l~~~--~~~~piilV~NK~-Dl~~~~~~~~~~~~~~--~~~ 255 (415)
+...|+.|+.++|++|||||+++.. ......+ ..++... ..+.|++|++||. |+...-...++.+.+. ...
T Consensus 115 lRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~L~L~~l~ 194 (227)
T 3l82_B 115 VIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHLNLLN 194 (227)
T ss_dssp --CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHHTTGGGGC
T ss_pred HHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHHHcCCcCCC
Confidence 3445788899999999999998653 2233444 3444332 1578999999995 7764333333333221 122
Q ss_pred CCccEEEcccCCCCCHHHHHHHHHhhCCC
Q 014942 256 DVDEVIPVSAKYGHGVEDIRDWILTKLPL 284 (415)
Q Consensus 256 ~~~~i~~vSA~~g~gv~eL~~~L~~~l~~ 284 (415)
..+.+.+|||++|+|+.+-++||.+.+..
T Consensus 195 R~W~Iq~csA~TGeGL~EGLdWL~~~l~~ 223 (227)
T 3l82_B 195 HPWLVQDTEAETLTGFLNGIEWILEEVES 223 (227)
T ss_dssp SCEEEEEEETTTCTTHHHHHHHHTTTTTT
T ss_pred CCEEEEEeECCCCcCHHHHHHHHHHHHHh
Confidence 45679999999999999999999988754
No 219
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.71 E-value=1.2e-08 Score=105.54 Aligned_cols=60 Identities=30% Similarity=0.401 Sum_probs=43.7
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEE-------eCCCeeEEEEeCCCCch
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC-------SGPEYQMILYDTPGIIE 175 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~-------~~~~~~l~liDtpG~~~ 175 (415)
+..+|+|+|.||||||||+|+|+|..... ..+++|+....++. ...+..+.++||||+..
T Consensus 37 ~~~~VaivG~pnvGKStLiN~L~g~~~~~--~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 37 PMVVVAIVGLYRTGKSYLMNKLAGKKKGF--SLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD 103 (592)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCSSCS--CCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred CCcEEEEECCCCCCHHHHHHhHcCCCCcc--ccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence 45689999999999999999999987532 34444433333332 23567899999999864
No 220
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.70 E-value=6.4e-08 Score=96.70 Aligned_cols=148 Identities=17% Similarity=0.247 Sum_probs=82.7
Q ss_pred CccEEEEEecCCCCHHHHHHHHh------CCceeeeeCCCCce-------------EEeEEEE----------------E
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMI------GQKLSIVTNKPQTT-------------RHRILGI----------------C 158 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~------~~~~~~~~~~~~tt-------------~~~~~~~----------------~ 158 (415)
+...|+++|.+||||||++..|. |.++..+...+... ....... .
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 34589999999999999999986 55555444222100 0000000 0
Q ss_pred eCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCC
Q 014942 159 SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDL 238 (415)
Q Consensus 159 ~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl 238 (415)
...++.++|+||||..+.....+ ..+ ..... ...+|.+++|+|++.+... .... ..+.. .-.+..+|+||+|.
T Consensus 179 ~~~~~DvVIIDTaGrl~~d~~lm-~el-~~i~~-~~~pd~vlLVvDA~~gq~a-~~~a-~~f~~--~~~i~gVIlTKlD~ 251 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKEDKALI-EEM-KQISN-VIHPHEVILVIDGTIGQQA-YNQA-LAFKE--ATPIGSIIVTKLDG 251 (443)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHH-HHH-HHHHH-HHCCSEEEEEEEGGGGGGH-HHHH-HHHHH--SCTTEEEEEECCSS
T ss_pred HhCCCCEEEEECCCcccchHHHH-HHH-HHHHH-hhcCceEEEEEeCCCchhH-HHHH-HHHHh--hCCCeEEEEECCCC
Confidence 11346899999999754322222 111 11222 3468999999999875332 2222 22222 23456799999998
Q ss_pred CChhHHHHHHHHHhhcCCCccEEEcccCCCCCHHHH
Q 014942 239 IKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDI 274 (415)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gv~eL 274 (415)
...... ....... .+ .|+..++. |+++++|
T Consensus 252 ~~~gG~--~ls~~~~-~g-~PI~fig~--Ge~vddL 281 (443)
T 3dm5_A 252 SAKGGG--ALSAVAA-TG-APIKFIGT--GEKIDDI 281 (443)
T ss_dssp CSSHHH--HHHHHHT-TC-CCEEEEEC--SSSTTCE
T ss_pred cccccH--HHHHHHH-HC-CCEEEEEc--CCChHHh
Confidence 754332 1222222 22 36766664 7777654
No 221
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=98.70 E-value=7.1e-10 Score=111.20 Aligned_cols=240 Identities=19% Similarity=0.161 Sum_probs=115.6
Q ss_pred ccEEEEEecCCCCHHHHHHHHh-------CCceeeeeCCCCceE--------------EeEEE---------------EE
Q 014942 115 SGYVAVLGKPNVGKSTLANQMI-------GQKLSIVTNKPQTTR--------------HRILG---------------IC 158 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~-------~~~~~~~~~~~~tt~--------------~~~~~---------------~~ 158 (415)
...|+++|.+||||||++..|. |.++..+...+.... +.+.. ..
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~~ 179 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEA 179 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHHH
Confidence 4578999999999999999986 666655444332110 00000 00
Q ss_pred eCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCC-EEEEEeCCC
Q 014942 159 SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKD 237 (415)
Q Consensus 159 ~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~p-iilV~NK~D 237 (415)
...++.++|+||||..+.... +...+. .+ ..+..+|.+++|+|+..+. ........+ . ...+ .-+|+||+|
T Consensus 180 ~~~~~D~VIIDTpG~l~~~~~-l~~~L~-~~-~~~~~p~~vllVvda~~g~-~~~~~~~~f-~---~~l~i~gvVlnK~D 251 (433)
T 2xxa_A 180 KLKFYDVLLVDTAGRLHVDEA-MMDEIK-QV-HASINPVETLFVVDAMTGQ-DAANTAKAF-N---EALPLTGVVLTKVD 251 (433)
T ss_dssp HHTTCSEEEEECCCCCTTCHH-HHHHHH-HH-HHHSCCSEEEEEEETTBCT-THHHHHHHH-H---HHSCCCCEEEECTT
T ss_pred HhCCCCEEEEECCCcccccHH-HHHHHH-HH-HHhhcCcceeEEeecchhH-HHHHHHHHH-h---ccCCCeEEEEecCC
Confidence 124678999999996442111 111111 11 2244789999999998653 222222222 1 1234 347999999
Q ss_pred CCChh-HHHHHHHHHhhc----------C---CCccEEEcccCCCCC-HHHHHHHHHhhCCCCCCCCCCCCccccCCchh
Q 014942 238 LIKPG-EIAKKLEWYEKF----------T---DVDEVIPVSAKYGHG-VEDIRDWILTKLPLGPAYYPKFQDIVSEHPER 302 (415)
Q Consensus 238 l~~~~-~~~~~~~~~~~~----------~---~~~~i~~vSA~~g~g-v~eL~~~L~~~l~~~~~~~~~~~~~~t~~~~~ 302 (415)
..... ............ . .+.+-..+|+..|.| +..|.+.+.+.+.. +...+..++
T Consensus 252 ~~~~~g~~l~i~~~~~~Pi~~iG~ge~v~dl~~f~p~~~a~~l~g~gD~~~Lie~a~~~~~~---------~~~~~l~~k 322 (433)
T 2xxa_A 252 GDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIASRILGMGDVLSLIEDIESKVDR---------AQAEKLASK 322 (433)
T ss_dssp SSSCCTHHHHHHHHHCCCEEEEECSSSSSCEEECCHHHHHHHHHCCCTTHHHHHHHHHHHHH---------HHHHHHHHH
T ss_pred CCccHHHHHHHHHHHCCCeEEEecCCCchhhhhcChHHHHHHHhCccchHHHHHHHHHhhhh---------hhhHHHHHH
Confidence 75432 222222222110 0 000111235556666 67776665543211 100011111
Q ss_pred HHHH-HHHHHHHHhhcC------------CCCCceEEEEEEEEEecCC--CeeEEEEEEE----EeeCCceeEEeecCCh
Q 014942 303 FFVG-EIIREKIFMQYR------------NEVPYACQVNVVSYKTRPT--AKDFIQVEIV----VEKNSQKIILIGKGGK 363 (415)
Q Consensus 303 ~~i~-eiireki~~~~~------------~eipys~~v~i~~~~~~~~--~~~~i~~~~~----~~r~~q~~iiiG~~g~ 363 (415)
+.-. ++.++.++..++ ..+|+...+. ..+....+ ....+.+.+. .||++++.| +|+
T Consensus 323 ~~~~~~f~~~d~~~ql~~~~~~g~~~~~~~~lPg~~~~~-~~~~~~~~~~~~~~~~~ii~smt~~er~~~~~~----~~s 397 (433)
T 2xxa_A 323 LKKGDGFDLNDFLEQLRQMKNMGGMASLMGKLPGMGQIP-DNVKSQMDDKVLVRMEAIINSMTMKERAKPEII----KGS 397 (433)
T ss_dssp HHSTTSCCHHHHHHHHHHHHSCSSCHHHHCC----------------CHHHHHHHHHHHHTSCHHHHHCGGGC----CHH
T ss_pred HhcCCCCCHHHHHHHHHHHHhcCCchhhhhcCcCcchhh-hhhhccccHHHHHHHHHHHHcCCHHHhcCcccc----CHH
Confidence 1111 122333333333 3799876542 22321111 1233444455 788888877 789
Q ss_pred HHHHHHHHHHHHH
Q 014942 364 ALKLLATAARLDI 376 (415)
Q Consensus 364 ~i~~i~~~ar~~l 376 (415)
++++|+.-|...+
T Consensus 398 r~~ria~gsg~~~ 410 (433)
T 2xxa_A 398 RKRRIAAGSGMQV 410 (433)
T ss_dssp HHHHHHHHHTCCH
T ss_pred HHHHHHccCCCCH
Confidence 9999999887433
No 222
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.65 E-value=7e-08 Score=91.29 Aligned_cols=102 Identities=21% Similarity=0.215 Sum_probs=71.4
Q ss_pred EeCCCCchhhhhhHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHHH
Q 014942 168 YDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKK 247 (415)
Q Consensus 168 iDtpG~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~~ 247 (415)
-+.||+... ..+++...+..+|++++|+|++++.......+.+++ .++|+++|+||+|+.+.......
T Consensus 4 ~w~PGhm~k--------a~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l----~~kp~ilVlNK~DL~~~~~~~~~ 71 (282)
T 1puj_A 4 QWFPGHMAK--------ARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL----KNKPRIMLLNKADKADAAVTQQW 71 (282)
T ss_dssp -----CTTH--------HHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC----SSSCEEEEEECGGGSCHHHHHHH
T ss_pred cCCchHHHH--------HHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH----CCCCEEEEEECcccCCHHHHHHH
Confidence 357886432 234556668999999999999987754433444444 46899999999999986555555
Q ss_pred HHHHhhcCCCccEEEcccCCCCCHHHHHHHHHhhCC
Q 014942 248 LEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLP 283 (415)
Q Consensus 248 ~~~~~~~~~~~~i~~vSA~~g~gv~eL~~~L~~~l~ 283 (415)
.+.+... + .+++++||++|.|+++|++.+.+.++
T Consensus 72 ~~~~~~~-g-~~~i~iSA~~~~gi~~L~~~i~~~l~ 105 (282)
T 1puj_A 72 KEHFENQ-G-IRSLSINSVNGQGLNQIVPASKEILQ 105 (282)
T ss_dssp HHHHHTT-T-CCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred HHHHHhc-C-CcEEEEECCCcccHHHHHHHHHHHHH
Confidence 5555432 2 37899999999999999998877654
No 223
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.56 E-value=1.3e-07 Score=90.38 Aligned_cols=85 Identities=24% Similarity=0.361 Sum_probs=62.2
Q ss_pred hhhcccceEEEEecCCCCC-c--hHHHHHHHHhcccCCCCCEEEEEeCCCCCChhH---HHHHHHHHhhcCCCccEEEcc
Q 014942 191 SAGINADCIVVLVDACKAP-E--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE---IAKKLEWYEKFTDVDEVIPVS 264 (415)
Q Consensus 191 ~~~~~aD~ii~VvD~~~~~-~--~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~---~~~~~~~~~~~~~~~~i~~vS 264 (415)
.++.++|++++|+|++++. . ..+.++. .+.. .++|+++|+||+|+.+... .....+.+... + .+++++|
T Consensus 75 ~~~~naD~vliV~d~~~p~~s~~~l~~~l~-~~~~--~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~-g-~~~~~~S 149 (302)
T 2yv5_A 75 PKVANVDRVIIVETLKMPEFNNYLLDNMLV-VYEY--FKVEPVIVFNKIDLLNEEEKKELERWISIYRDA-G-YDVLKVS 149 (302)
T ss_dssp TEEESCCEEEEEECSTTTTCCHHHHHHHHH-HHHH--TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHT-T-CEEEECC
T ss_pred HHHHhcCEEEEEEECCCCCCCHHHHHHHHH-HHHh--CCCCEEEEEEcccCCCccccHHHHHHHHHHHHC-C-CeEEEEE
Confidence 4689999999999998764 2 2234443 3344 6799999999999987653 33334444433 3 3899999
Q ss_pred cCCCCCHHHHHHHHHh
Q 014942 265 AKYGHGVEDIRDWILT 280 (415)
Q Consensus 265 A~~g~gv~eL~~~L~~ 280 (415)
|++|.|+++|++.+..
T Consensus 150 A~~g~gi~~L~~~l~G 165 (302)
T 2yv5_A 150 AKTGEGIDELVDYLEG 165 (302)
T ss_dssp TTTCTTHHHHHHHTTT
T ss_pred CCCCCCHHHHHhhccC
Confidence 9999999999988764
No 224
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.53 E-value=3e-08 Score=92.80 Aligned_cols=57 Identities=35% Similarity=0.489 Sum_probs=38.2
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEEEEEeCCCeeEEEEeCCCCch
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIE 175 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG~~~ 175 (415)
.+++++|.||||||||+|+|.+.....++..+++|+....... +..+.+|||||+..
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~---~~~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSL---ENGVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEEEC---TTSCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEEe---CCCEEEEECCCccc
Confidence 4899999999999999999999887777888888876543222 23789999999864
No 225
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.48 E-value=2.2e-07 Score=91.19 Aligned_cols=93 Identities=23% Similarity=0.237 Sum_probs=61.5
Q ss_pred HHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChh----HHHHHHHHHhhcCCC--ccE
Q 014942 187 KNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG----EIAKKLEWYEKFTDV--DEV 260 (415)
Q Consensus 187 ~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~----~~~~~~~~~~~~~~~--~~i 260 (415)
+.+..+.+.+|++++|+|++++.......+.+. ..++|+++|+||+|+.+.. .+.+.........+. .++
T Consensus 61 ~~l~~i~~~~~~il~VvD~~d~~~~~~~~l~~~----~~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~g~~~~~v 136 (368)
T 3h2y_A 61 RILNGIGKSDALVVKIVDIFDFNGSWLPGLHRF----VGNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLGLKPEDV 136 (368)
T ss_dssp HHHHHHHHSCCEEEEEEETTSHHHHCCTTHHHH----SSSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHTTCCCSEE
T ss_pred HHHHHHhccCcEEEEEEECCCCcccHHHHHHHH----hCCCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHcCCCcccE
Confidence 334455678889999999987432111122222 2478999999999997543 222322222222233 378
Q ss_pred EEcccCCCCCHHHHHHHHHhhCC
Q 014942 261 IPVSAKYGHGVEDIRDWILTKLP 283 (415)
Q Consensus 261 ~~vSA~~g~gv~eL~~~L~~~l~ 283 (415)
+.+||++|.|+++|++.|.+...
T Consensus 137 ~~iSA~~g~gi~~L~~~l~~~~~ 159 (368)
T 3h2y_A 137 FLISAAKGQGIAELADAIEYYRG 159 (368)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHT
T ss_pred EEEeCCCCcCHHHHHhhhhhhcc
Confidence 99999999999999999987653
No 226
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.46 E-value=3.5e-07 Score=85.64 Aligned_cols=98 Identities=11% Similarity=0.044 Sum_probs=67.0
Q ss_pred HHHHhhhcccceEEEEecCCCCCc-hHHHHHH---HHhccc--CCCCCEEEEEeC-CCCCChhHHHHHHHHHh--hcCCC
Q 014942 187 KNVRSAGINADCIVVLVDACKAPE-RIDEILE---EGVGDH--KDKLPILLVLNK-KDLIKPGEIAKKLEWYE--KFTDV 257 (415)
Q Consensus 187 ~~~~~~~~~aD~ii~VvD~~~~~~-~~~~~l~---~~l~~~--~~~~piilV~NK-~Dl~~~~~~~~~~~~~~--~~~~~ 257 (415)
..|+.|+.++|++|||||+++... .....+. .++... ..+.|++|++|| .|+...-...++.+.+. .....
T Consensus 202 plWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~L~L~~l~r~ 281 (312)
T 3l2o_B 202 PQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHLNLLNHP 281 (312)
T ss_dssp HHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHHTTGGGGCSC
T ss_pred HHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHHcCCccCCCc
Confidence 347788999999999999987642 1222222 333321 267999999997 58865433333333322 12245
Q ss_pred ccEEEcccCCCCCHHHHHHHHHhhCCC
Q 014942 258 DEVIPVSAKYGHGVEDIRDWILTKLPL 284 (415)
Q Consensus 258 ~~i~~vSA~~g~gv~eL~~~L~~~l~~ 284 (415)
..+.+|||.+|+|+.+-++||.+.+..
T Consensus 282 W~Iq~csA~tGeGL~EGldWL~~~l~~ 308 (312)
T 3l2o_B 282 WLVQDTEAETLTGFLNGIEWILEEVES 308 (312)
T ss_dssp EEEEEEETTTCTTHHHHHHHHHHHSCC
T ss_pred EEEEecccCCCcCHHHHHHHHHHHHHh
Confidence 679999999999999999999998864
No 227
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.42 E-value=5e-07 Score=88.74 Aligned_cols=91 Identities=23% Similarity=0.199 Sum_probs=63.0
Q ss_pred HHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChh----HHHHHHHHHhhcCCC--ccEEE
Q 014942 189 VRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG----EIAKKLEWYEKFTDV--DEVIP 262 (415)
Q Consensus 189 ~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~----~~~~~~~~~~~~~~~--~~i~~ 262 (415)
+..+...++++++|+|++++.......+.+.+ .++|+++|+||+|+.+.. .+.+....+....+. .+++.
T Consensus 65 L~~~~~~~~lil~VvD~~d~~~s~~~~l~~~l----~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~g~~~~~v~~ 140 (369)
T 3ec1_A 65 LHRIGESKALVVNIVDIFDFNGSFIPGLPRFA----ADNPILLVGNKADLLPRSVKYPKLLRWMRRMAEELGLCPVDVCL 140 (369)
T ss_dssp HHHHHHHCCEEEEEEETTCSGGGCCSSHHHHC----TTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTTTCCCSEEEE
T ss_pred HHHhhccCcEEEEEEECCCCCCchhhHHHHHh----CCCCEEEEEEChhcCCCccCHHHHHHHHHHHHHHcCCCcccEEE
Confidence 44446788999999999986643333333332 478999999999997642 222332222222333 47899
Q ss_pred cccCCCCCHHHHHHHHHhhCC
Q 014942 263 VSAKYGHGVEDIRDWILTKLP 283 (415)
Q Consensus 263 vSA~~g~gv~eL~~~L~~~l~ 283 (415)
+||++|.|+++|++.|.+...
T Consensus 141 iSA~~g~gi~~L~~~I~~~~~ 161 (369)
T 3ec1_A 141 VSAAKGIGMAKVMEAINRYRE 161 (369)
T ss_dssp CBTTTTBTHHHHHHHHHHHHT
T ss_pred EECCCCCCHHHHHHHHHhhcc
Confidence 999999999999999987654
No 228
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.40 E-value=4.7e-07 Score=90.37 Aligned_cols=145 Identities=17% Similarity=0.204 Sum_probs=78.0
Q ss_pred ccEEEEEecCCCCHHHHHHHHh------CCceeeeeCCC----------------CceEEeEE-----------E--EEe
Q 014942 115 SGYVAVLGKPNVGKSTLANQMI------GQKLSIVTNKP----------------QTTRHRIL-----------G--ICS 159 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~------~~~~~~~~~~~----------------~tt~~~~~-----------~--~~~ 159 (415)
...|+++|++||||||++..|. |.++..+...+ +....... . ...
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a~ 176 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIFV 176 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHHH
Confidence 4579999999999999999986 55544333111 11000000 0 011
Q ss_pred CCCeeEEEEeCCCCch--hhhhhHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCC
Q 014942 160 GPEYQMILYDTPGIIE--KKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKD 237 (415)
Q Consensus 160 ~~~~~l~liDtpG~~~--~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~D 237 (415)
..++.++++||||..+ .....+ ..+. .+.... .+|.+++|+|++.+... .... ..+.. .-.+..+|+||+|
T Consensus 177 ~~~~DvvIIDTaGr~~~~~d~~lm-~el~-~i~~~~-~pd~vlLVlDa~~gq~a-~~~a-~~f~~--~~~~~gVIlTKlD 249 (433)
T 3kl4_A 177 KNKMDIIIVDTAGRHGYGEETKLL-EEMK-EMYDVL-KPDDVILVIDASIGQKA-YDLA-SRFHQ--ASPIGSVIITKMD 249 (433)
T ss_dssp TTTCSEEEEEECCCSSSCCTTHHH-HHHH-HHHHHH-CCSEEEEEEEGGGGGGG-HHHH-HHHHH--HCSSEEEEEECGG
T ss_pred hcCCCEEEEECCCCccccCCHHHH-HHHH-HHHHhh-CCcceEEEEeCccchHH-HHHH-HHHhc--ccCCcEEEEeccc
Confidence 2357899999999643 222222 2221 122222 56899999999865322 2222 22222 2246789999999
Q ss_pred CCChhHHHHHHHHHhhcCCCccEEEcccCCCCCHH
Q 014942 238 LIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVE 272 (415)
Q Consensus 238 l~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gv~ 272 (415)
....... ........ + .|+..++. |++++
T Consensus 250 ~~a~~G~--als~~~~~-g-~Pi~fig~--Ge~v~ 278 (433)
T 3kl4_A 250 GTAKGGG--ALSAVVAT-G-ATIKFIGT--GEKID 278 (433)
T ss_dssp GCSCHHH--HHHHHHHH-T-CEEEEEEC--CSSSS
T ss_pred ccccchH--HHHHHHHH-C-CCEEEEEC--CCChH
Confidence 8643321 11212211 2 36666664 66653
No 229
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.28 E-value=3.9e-07 Score=85.23 Aligned_cols=86 Identities=15% Similarity=0.125 Sum_probs=62.4
Q ss_pred HHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCChhHHHHHHHHHhhcCCCccEEEcccCC
Q 014942 188 NVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKY 267 (415)
Q Consensus 188 ~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~ 267 (415)
.+...+..+|+++.|+|++.+.......+. ++ ++|.++|+||+|+.+........+.+... + .++ .+||++
T Consensus 14 ~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-ll-----~k~~iivlNK~DL~~~~~~~~~~~~~~~~-g-~~v-~iSa~~ 84 (262)
T 3cnl_A 14 QIKDLLRLVNTVVEVRDARAPFATSAYGVD-FS-----RKETIILLNKVDIADEKTTKKWVEFFKKQ-G-KRV-ITTHKG 84 (262)
T ss_dssp HHHHHHTTCSEEEEEEETTSTTTTSCTTSC-CT-----TSEEEEEEECGGGSCHHHHHHHHHHHHHT-T-CCE-EECCTT
T ss_pred HHHHHHhhCCEEEEEeeCCCCCcCcChHHH-hc-----CCCcEEEEECccCCCHHHHHHHHHHHHHc-C-CeE-EEECCC
Confidence 345557899999999999877643221111 11 78999999999999876555555555442 2 357 999999
Q ss_pred CCCHHHHHHHHHhhC
Q 014942 268 GHGVEDIRDWILTKL 282 (415)
Q Consensus 268 g~gv~eL~~~L~~~l 282 (415)
|.|+++|++.|...+
T Consensus 85 ~~gi~~L~~~l~~~~ 99 (262)
T 3cnl_A 85 EPRKVLLKKLSFDRL 99 (262)
T ss_dssp SCHHHHHHHHCCCTT
T ss_pred CcCHHHHHHHHHHhh
Confidence 999999998886653
No 230
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.26 E-value=1.6e-06 Score=90.57 Aligned_cols=78 Identities=17% Similarity=0.175 Sum_probs=42.3
Q ss_pred eeEEEEeCCCCchhhhhh----HhHHHHHHHHhhhcc-cceEEEEecCCCCC-chHHHHHHHHhcccCCCCCEEEEEeCC
Q 014942 163 YQMILYDTPGIIEKKIHM----LDSMMMKNVRSAGIN-ADCIVVLVDACKAP-ERIDEILEEGVGDHKDKLPILLVLNKK 236 (415)
Q Consensus 163 ~~l~liDtpG~~~~~~~~----l~~~~~~~~~~~~~~-aD~ii~VvD~~~~~-~~~~~~l~~~l~~~~~~~piilV~NK~ 236 (415)
..+.++|.||+...+... ........+..++.. ..++++++++.... ......+...+.. .+.+.|+|+||.
T Consensus 147 p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~--~g~rtI~VlTK~ 224 (608)
T 3szr_A 147 PDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDP--EGDRTIGILTKP 224 (608)
T ss_dssp CCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCS--SCCSEEEEEECG
T ss_pred CceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhh--cCCceEEEecch
Confidence 468999999975432221 122333444554444 35666666654332 2222334444444 578999999999
Q ss_pred CCCChh
Q 014942 237 DLIKPG 242 (415)
Q Consensus 237 Dl~~~~ 242 (415)
|+....
T Consensus 225 Dlv~~g 230 (608)
T 3szr_A 225 DLVDKG 230 (608)
T ss_dssp GGSSSS
T ss_pred hhcCcc
Confidence 998543
No 231
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.23 E-value=3.6e-06 Score=80.06 Aligned_cols=145 Identities=18% Similarity=0.234 Sum_probs=78.4
Q ss_pred ccEEEEEecCCCCHHHHHHHHh------CCceeeeeCCCCce-----------E---EeEEE---------------EEe
Q 014942 115 SGYVAVLGKPNVGKSTLANQMI------GQKLSIVTNKPQTT-----------R---HRILG---------------ICS 159 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~------~~~~~~~~~~~~tt-----------~---~~~~~---------------~~~ 159 (415)
...++++|.+|+||||++..|. +.++..+...+... + ..+.. ...
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 4478999999999999999986 44544333222110 0 00000 001
Q ss_pred CCCeeEEEEeCCCCch--hhhhhHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCC-EEEEEeCC
Q 014942 160 GPEYQMILYDTPGIIE--KKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKK 236 (415)
Q Consensus 160 ~~~~~l~liDtpG~~~--~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~p-iilV~NK~ 236 (415)
..++.++++||||..+ ... .+-..+ ... .....+|.+++|+|+..+ ........ .+. ...| ..+|+||+
T Consensus 178 ~~~~D~ViIDTpg~~~~~~~~-~l~~el-~~i-~~~~~~d~vllVvda~~g-~~~~~~~~-~~~---~~~~i~gvVlnk~ 249 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRHGYGEEA-ALLEEM-KNI-YEAIKPDEVTLVIDASIG-QKAYDLAS-KFN---QASKIGTIIITKM 249 (297)
T ss_dssp HTTCSEEEEECCCSCCTTCHH-HHHHHH-HHH-HHHHCCSEEEEEEEGGGG-GGHHHHHH-HHH---HTCTTEEEEEECG
T ss_pred hCCCCEEEEeCCCCcccccHH-HHHHHH-HHH-HHHhcCCEEEEEeeCCch-HHHHHHHH-HHH---hhCCCCEEEEeCC
Confidence 1566899999999754 211 111111 111 123478999999998754 22222222 222 2356 77899999
Q ss_pred CCCChhHHHHHHHHHhhcCCCccEEEcccCCCCCHHH
Q 014942 237 DLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVED 273 (415)
Q Consensus 237 Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gv~e 273 (415)
|...... ....... ..+ .|+..++ +|+++++
T Consensus 250 D~~~~~g--~~~~~~~-~~~-~pi~~i~--~Ge~v~d 280 (297)
T 1j8m_F 250 DGTAKGG--GALSAVA-ATG-ATIKFIG--TGEKIDE 280 (297)
T ss_dssp GGCTTHH--HHHHHHH-TTT-CCEEEEE--CSSSTTC
T ss_pred CCCcchH--HHHHHHH-HHC-cCEEEEe--CCCChhh
Confidence 9764332 1122222 222 3666665 5777754
No 232
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=98.20 E-value=2.5e-06 Score=85.41 Aligned_cols=63 Identities=24% Similarity=0.266 Sum_probs=44.7
Q ss_pred CCCccEEEEEecCCCCHHHHHHHHhCC---------------ceeeeeCCCCceEEeEEEEEeCC-----------CeeE
Q 014942 112 NHKSGYVAVLGKPNVGKSTLANQMIGQ---------------KLSIVTNKPQTTRHRILGICSGP-----------EYQM 165 (415)
Q Consensus 112 ~~~~~~V~ivG~~~vGKSSLln~l~~~---------------~~~~~~~~~~tt~~~~~~~~~~~-----------~~~l 165 (415)
+.+...|+|+|.+++|||||+|+|++. +....+.. ++|+..+.+++.+. +..+
T Consensus 64 ~~~v~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~-~t~~~~T~GIw~~~~p~~~~~~~~~~~~v 142 (447)
T 3q5d_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWR-GGSERETTGIQIWSEIFLINKPDGKKVAV 142 (447)
T ss_dssp TSBEEEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSC-CSSCCCCCEEEEESSCEEEECSSSCEEEE
T ss_pred CCceEEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCC-CCCCCceeEEEEecCccccccCCCCcceE
Confidence 456779999999999999999999864 22222322 25555555554432 4689
Q ss_pred EEEeCCCCch
Q 014942 166 ILYDTPGIIE 175 (415)
Q Consensus 166 ~liDtpG~~~ 175 (415)
+++||||+.+
T Consensus 143 vllDTeG~~~ 152 (447)
T 3q5d_A 143 LLMDTQGTFD 152 (447)
T ss_dssp EEEEEECCCS
T ss_pred EEEcCCcccc
Confidence 9999999854
No 233
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.80 E-value=8.8e-06 Score=77.60 Aligned_cols=84 Identities=20% Similarity=0.210 Sum_probs=59.5
Q ss_pred hhcccceEEEEecCCCCCchHHHHHHHHhccc-CCCCCEEEEEeCCCCCChhH----HHHHHHHHhhcCCCccEEEcccC
Q 014942 192 AGINADCIVVLVDACKAPERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGE----IAKKLEWYEKFTDVDEVIPVSAK 266 (415)
Q Consensus 192 ~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~-~~~~piilV~NK~Dl~~~~~----~~~~~~~~~~~~~~~~i~~vSA~ 266 (415)
.+.++|.+++|+|+..+..... .+.+++... ..++|.++|+||+|+.++.. +..+...+... + .+++.+||.
T Consensus 83 ~~anvD~v~~V~~~~~p~~~~~-~i~r~L~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~-g-~~v~~~sa~ 159 (307)
T 1t9h_A 83 PICNVDQAVLVFSAVQPSFSTA-LLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNI-G-YDVYLTSSK 159 (307)
T ss_dssp TEECCCEEEEEEESTTTTCCHH-HHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHH-T-CCEEECCHH
T ss_pred HHHhCCEEEEEEeCCCCCCCHH-HHHHHHHHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhC-C-CeEEEEecC
Confidence 4789999999999987664443 344433211 16789999999999987643 44455555443 2 379999999
Q ss_pred CCCCHHHHHHHH
Q 014942 267 YGHGVEDIRDWI 278 (415)
Q Consensus 267 ~g~gv~eL~~~L 278 (415)
+|.|+++|++.+
T Consensus 160 ~~~g~~~L~~~~ 171 (307)
T 1t9h_A 160 DQDSLADIIPHF 171 (307)
T ss_dssp HHTTCTTTGGGG
T ss_pred CCCCHHHHHhhc
Confidence 999998876543
No 234
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.66 E-value=0.00017 Score=69.44 Aligned_cols=147 Identities=20% Similarity=0.208 Sum_probs=75.4
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCC------ceeeeeCCCCc-----------eEEeEEEEE------------------
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQ------KLSIVTNKPQT-----------TRHRILGIC------------------ 158 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~------~~~~~~~~~~t-----------t~~~~~~~~------------------ 158 (415)
+.-.++++|++||||||+++.|.+. ++......... .+..+....
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~~ 207 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHA 207 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHHH
Confidence 3448999999999999999998742 22222111100 000000000
Q ss_pred eCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCC
Q 014942 159 SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDL 238 (415)
Q Consensus 159 ~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl 238 (415)
...+..+.++||+|..+.....+. .+.. .... -.+|-.++++|+..+. .....+..+.+. -...++++||.|.
T Consensus 208 ~~~~~d~vliDtaG~~~~~~~l~~-eL~~-i~ra-l~~de~llvLDa~t~~-~~~~~~~~~~~~---~~it~iilTKlD~ 280 (328)
T 3e70_C 208 KARGIDVVLIDTAGRSETNRNLMD-EMKK-IARV-TKPNLVIFVGDALAGN-AIVEQARQFNEA---VKIDGIILTKLDA 280 (328)
T ss_dssp HHHTCSEEEEEECCSCCTTTCHHH-HHHH-HHHH-HCCSEEEEEEEGGGTT-HHHHHHHHHHHH---SCCCEEEEECGGG
T ss_pred HhccchhhHHhhccchhHHHHHHH-HHHH-HHHH-hcCCCCEEEEecHHHH-HHHHHHHHHHHh---cCCCEEEEeCcCC
Confidence 012346788999997543322222 2211 1122 2478899999987653 222223222222 1234788999997
Q ss_pred CChhHHHHHHHHHhhcCCCccEEEcccCCCCCHHH
Q 014942 239 IKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVED 273 (415)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gv~e 273 (415)
...... ........ + .|+..++ +|+++++
T Consensus 281 ~a~~G~--~l~~~~~~-~-~pi~~i~--~Ge~v~d 309 (328)
T 3e70_C 281 DARGGA--ALSISYVI-D-APILFVG--VGQGYDD 309 (328)
T ss_dssp CSCCHH--HHHHHHHH-T-CCEEEEE--CSSSTTC
T ss_pred ccchhH--HHHHHHHH-C-CCEEEEe--CCCCccc
Confidence 432211 12222221 1 3677766 6777654
No 235
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.64 E-value=0.00035 Score=66.42 Aligned_cols=122 Identities=18% Similarity=0.158 Sum_probs=64.8
Q ss_pred ccEEEEEecCCCCHHHHHHHHhC------CceeeeeCCC---Cc--------eEEeEEEEEe------------------
Q 014942 115 SGYVAVLGKPNVGKSTLANQMIG------QKLSIVTNKP---QT--------TRHRILGICS------------------ 159 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~~------~~~~~~~~~~---~t--------t~~~~~~~~~------------------ 159 (415)
...|+++|++|||||||++.|.+ .++....... .. .+..+..+..
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~~ 181 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAMK 181 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHH
Confidence 34899999999999999999863 2222211110 00 0000111110
Q ss_pred CCCeeEEEEeCCCCchhhhh---hHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCC
Q 014942 160 GPEYQMILYDTPGIIEKKIH---MLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKK 236 (415)
Q Consensus 160 ~~~~~l~liDtpG~~~~~~~---~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~ 236 (415)
..+..+.++||+|..+.... .+........+.....++.+++++|+..+.. ....+..+... .+ ..++++||.
T Consensus 182 ~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~-~~~~~~~~~~~--~~-~t~iivTh~ 257 (304)
T 1rj9_A 182 ARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQN-GLEQAKKFHEA--VG-LTGVIVTKL 257 (304)
T ss_dssp HHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTH-HHHHHHHHHHH--HC-CSEEEEECT
T ss_pred hCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHH-HHHHHHHHHHH--cC-CcEEEEECC
Confidence 11235779999997543222 2221111112233456788899999876643 22333333222 12 357889999
Q ss_pred CCCC
Q 014942 237 DLIK 240 (415)
Q Consensus 237 Dl~~ 240 (415)
|...
T Consensus 258 d~~a 261 (304)
T 1rj9_A 258 DGTA 261 (304)
T ss_dssp TSSC
T ss_pred cccc
Confidence 8753
No 236
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.51 E-value=0.00041 Score=69.96 Aligned_cols=121 Identities=16% Similarity=0.238 Sum_probs=62.9
Q ss_pred ccEEEEEecCCCCHHHHHHHHhC------CceeeeeCCCCce-----------EEeEEEEEe------------------
Q 014942 115 SGYVAVLGKPNVGKSTLANQMIG------QKLSIVTNKPQTT-----------RHRILGICS------------------ 159 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~~------~~~~~~~~~~~tt-----------~~~~~~~~~------------------ 159 (415)
...++|+|.+|+|||||++.|.+ .++.......... +..+..+..
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~~a~ 372 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAK 372 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHHHHHH
Confidence 34799999999999999999864 2333221111100 000111111
Q ss_pred CCCeeEEEEeCCCCchhhhhhHhHH--HHHHHHhh-hcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCC
Q 014942 160 GPEYQMILYDTPGIIEKKIHMLDSM--MMKNVRSA-GINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKK 236 (415)
Q Consensus 160 ~~~~~l~liDtpG~~~~~~~~l~~~--~~~~~~~~-~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~ 236 (415)
..++.++++||+|..+.....+... +...++.. ....+-+++|+|++.+.... ..+..+... .+. ..+|+||.
T Consensus 373 ~~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al-~~ak~f~~~--~~i-tgvIlTKL 448 (503)
T 2yhs_A 373 ARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAV-SQAKLFHEA--VGL-TGITLTKL 448 (503)
T ss_dssp HTTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHH-HHHHHHHHH--TCC-SEEEEECG
T ss_pred hcCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHH-HHHHHHHhh--cCC-CEEEEEcC
Confidence 1345789999999854333222211 11111111 11356789999987663222 222222222 222 45789999
Q ss_pred CCC
Q 014942 237 DLI 239 (415)
Q Consensus 237 Dl~ 239 (415)
|-.
T Consensus 449 D~t 451 (503)
T 2yhs_A 449 DGT 451 (503)
T ss_dssp GGC
T ss_pred CCc
Confidence 964
No 237
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.50 E-value=0.00021 Score=67.76 Aligned_cols=119 Identities=16% Similarity=0.171 Sum_probs=63.3
Q ss_pred CccEEEEEecCCCCHHHHHHHHh-------CCceeeeeCCCCc--eEE-----------eEEE----------EEeCCCe
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMI-------GQKLSIVTNKPQT--TRH-----------RILG----------ICSGPEY 163 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~-------~~~~~~~~~~~~t--t~~-----------~~~~----------~~~~~~~ 163 (415)
+...|+++|++|+||||++..|. |.++..+...+.. ... .... +....+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~~~~ 183 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELFSEY 183 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHGGGS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHhcCC
Confidence 34489999999999999999885 2233333222210 000 0000 0011456
Q ss_pred eEEEEeCCCCchhhhhhHhHHHHHHHHhhhc--ccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCCh
Q 014942 164 QMILYDTPGIIEKKIHMLDSMMMKNVRSAGI--NADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (415)
Q Consensus 164 ~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~--~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~~ 241 (415)
.++++||||........+ ......+. .++.+++|+|++.+.... .+..+.+..-...-+|+||.|....
T Consensus 184 dlvIiDT~G~~~~~~~~~-----~el~~~l~~~~~~~~~lVl~at~~~~~~----~~~~~~~~~l~~~giVltk~D~~~~ 254 (296)
T 2px0_A 184 DHVFVDTAGRNFKDPQYI-----DELKETIPFESSIQSFLVLSATAKYEDM----KHIVKRFSSVPVNQYIFTKIDETTS 254 (296)
T ss_dssp SEEEEECCCCCTTSHHHH-----HHHHHHSCCCTTEEEEEEEETTBCHHHH----HHHTTTTSSSCCCEEEEECTTTCSC
T ss_pred CEEEEeCCCCChhhHHHH-----HHHHHHHhhcCCCeEEEEEECCCCHHHH----HHHHHHHhcCCCCEEEEeCCCcccc
Confidence 899999999754222111 11222222 367889999987653322 2222222111124567799997643
No 238
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.47 E-value=0.0011 Score=63.33 Aligned_cols=118 Identities=18% Similarity=0.264 Sum_probs=63.1
Q ss_pred ccEEEEEecCCCCHHHHHHHHh------CCceeeeeCCCCc--------e------EEeEEEEE----------------
Q 014942 115 SGYVAVLGKPNVGKSTLANQMI------GQKLSIVTNKPQT--------T------RHRILGIC---------------- 158 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~------~~~~~~~~~~~~t--------t------~~~~~~~~---------------- 158 (415)
...|+++|.+|+||||++..|. +.++..+...+.. . +..+ .++
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l-~vip~~~~~~~p~~~~~~~ 183 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKV-DLVKANKLNADPASVVFDA 183 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTE-EEECCSSTTCCHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCc-eEEeCCCCCCCHHHHHHHH
Confidence 3479999999999999998875 3333332211110 0 1111 111
Q ss_pred ----eCCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhh-----cccceEEEEecCCCCCchHHHHHHHHhcccCCCCC-
Q 014942 159 ----SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG-----INADCIVVLVDACKAPERIDEILEEGVGDHKDKLP- 228 (415)
Q Consensus 159 ----~~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~-----~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~p- 228 (415)
...++.++|+||||..+.....+. .+ ..+...+ ..+|.+++|+|+..+ ........... ...+
T Consensus 184 l~~~~~~~yD~VIIDTpg~l~~~~~l~~-eL-~~~~~vi~~~~p~~~d~vllVl~a~~~-~~~l~~~~~~~----~~~~i 256 (320)
T 1zu4_A 184 IKKAKEQNYDLLLIDTAGRLQNKTNLMA-EL-EKMNKIIQQVEKSAPHEVLLVIDATTG-QNGVIQAEEFS----KVADV 256 (320)
T ss_dssp HHHHHHTTCSEEEEECCCCGGGHHHHHH-HH-HHHHHHHHTTCTTCCSEEEEEEEGGGT-HHHHHHHHHHT----TTSCC
T ss_pred HHHHHhcCCCEEEEcCCCcccccHHHHH-HH-HHHHHHHhcccCCCCceEEEEEECCCc-HHHHHHHHHHh----hcCCC
Confidence 023568999999997543211221 11 1111111 347899999998754 22222222221 2233
Q ss_pred EEEEEeCCCCCC
Q 014942 229 ILLVLNKKDLIK 240 (415)
Q Consensus 229 iilV~NK~Dl~~ 240 (415)
.-+|+||+|...
T Consensus 257 ~GvVltk~d~~~ 268 (320)
T 1zu4_A 257 SGIILTKMDSTS 268 (320)
T ss_dssp CEEEEECGGGCS
T ss_pred cEEEEeCCCCCC
Confidence 457899999754
No 239
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.41 E-value=0.00034 Score=67.92 Aligned_cols=83 Identities=22% Similarity=0.335 Sum_probs=54.2
Q ss_pred hhcccceEEEEecCCCCCchHHHHHHHHhccc-CCCCCEEEEEeCCCCCChhH---HHHHHHHHhhcCCCccEEEcccCC
Q 014942 192 AGINADCIVVLVDACKAPERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGE---IAKKLEWYEKFTDVDEVIPVSAKY 267 (415)
Q Consensus 192 ~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~-~~~~piilV~NK~Dl~~~~~---~~~~~~~~~~~~~~~~i~~vSA~~ 267 (415)
.+.++|.+++|. +..+.... ..+.+++... ..++|.++|+||+|+.+... +..+...+... + .+++.+||.+
T Consensus 127 i~anvD~v~iv~-a~~P~~~~-~~i~r~L~~a~~~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~-G-~~v~~~Sa~~ 202 (358)
T 2rcn_A 127 IAANIDQIVIVS-AILPELSL-NIIDRYLVGCETLQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNI-G-YRVLMVSSHT 202 (358)
T ss_dssp EEECCCEEEEEE-ESTTTCCH-HHHHHHHHHHHHHTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTT-T-CCEEECBTTT
T ss_pred HHhcCCEEEEEE-eCCCCCCH-HHHHHHHHHHHhcCCCEEEEEECccCCCchhHHHHHHHHHHHHhC-C-CcEEEEecCC
Confidence 368999999774 44444221 2333332110 14678899999999987654 33344444432 3 3799999999
Q ss_pred CCCHHHHHHHH
Q 014942 268 GHGVEDIRDWI 278 (415)
Q Consensus 268 g~gv~eL~~~L 278 (415)
|.|+++|...+
T Consensus 203 ~~gl~~L~~~~ 213 (358)
T 2rcn_A 203 QDGLKPLEEAL 213 (358)
T ss_dssp TBTHHHHHHHH
T ss_pred CcCHHHHHHhc
Confidence 99999998765
No 240
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.31 E-value=6.3e-05 Score=71.66 Aligned_cols=55 Identities=29% Similarity=0.307 Sum_probs=31.5
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCceeeeeCCC-------CceEEeEEEEEeCCCeeEEEEeCCCCc
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKP-------QTTRHRILGICSGPEYQMILYDTPGII 174 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~-------~tt~~~~~~~~~~~~~~l~liDtpG~~ 174 (415)
..++|+|++|||||||+|.|.+.....+.... ++|+.... +... .-.++||||+.
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~--~~~~--~g~v~dtpg~~ 235 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVEL--IHTS--GGLVADTPGFS 235 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC-------------------CCCCCE--EEET--TEEEESSCSCS
T ss_pred CEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHH--hhcC--CEEEecCCCcc
Confidence 38999999999999999999986533222111 33433211 1111 24789999974
No 241
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.29 E-value=0.00034 Score=61.81 Aligned_cols=111 Identities=16% Similarity=0.225 Sum_probs=66.4
Q ss_pred EEEEE-ecCCCCHHHHHHHHh------CCceeeeeCCCCceEEe-------EEEEEe-------------CCCeeEEEEe
Q 014942 117 YVAVL-GKPNVGKSTLANQMI------GQKLSIVTNKPQTTRHR-------ILGICS-------------GPEYQMILYD 169 (415)
Q Consensus 117 ~V~iv-G~~~vGKSSLln~l~------~~~~~~~~~~~~tt~~~-------~~~~~~-------------~~~~~l~liD 169 (415)
.|+|. +..|+||||+.-.|. |.++..+...++.+... ....+. ...+.++++|
T Consensus 3 vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~yD~viiD 82 (206)
T 4dzz_A 3 VISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQMSLTNWSKAGKAAFDVFTAASEKDVYGIRKDLADYDFAIVD 82 (206)
T ss_dssp EEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHTTSCCSSEEEECCSHHHHHTHHHHTTTSSEEEEE
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCCCCCHHHHHhcCCCCCcEEecCcHHHHHHHHHhcCCCCEEEEE
Confidence 46666 568899999987663 44554444333211000 001111 1346899999
Q ss_pred CCCCchhhhhhHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhccc---CCCCCEEEEEeCCCCC
Q 014942 170 TPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDH---KDKLPILLVLNKKDLI 239 (415)
Q Consensus 170 tpG~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~---~~~~piilV~NK~Dl~ 239 (415)
||+.... .....+..+|.+|+++..+... .....+.+.++.. ..+.++.+|+|++|..
T Consensus 83 ~~~~~~~-----------~~~~~l~~ad~viiv~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~ 143 (206)
T 4dzz_A 83 GAGSLSV-----------ITSAAVMVSDLVIIPVTPSPLD-FSAAGSVVTVLEAQAYSRKVEARFLITRKIEM 143 (206)
T ss_dssp CCSSSSH-----------HHHHHHHHCSEEEEEECSCTTT-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTT
T ss_pred CCCCCCH-----------HHHHHHHHCCEEEEEecCCHHH-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCC
Confidence 9985321 1233466799999999887655 4444455555432 2356789999999954
No 242
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.16 E-value=0.0013 Score=65.39 Aligned_cols=118 Identities=19% Similarity=0.254 Sum_probs=62.8
Q ss_pred ccEEEEEecCCCCHHHHHHHHh------CCceeeeeCCCCce-----------E--EeEEEE----------------Ee
Q 014942 115 SGYVAVLGKPNVGKSTLANQMI------GQKLSIVTNKPQTT-----------R--HRILGI----------------CS 159 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~------~~~~~~~~~~~~tt-----------~--~~~~~~----------------~~ 159 (415)
...|+++|.+|+||||++..|. +.++..+...+... . -.+... ..
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~~ 177 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKAR 177 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHHH
Confidence 3478899999999999998885 23333222111100 0 000000 01
Q ss_pred CCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCC-EEEEEeCCCC
Q 014942 160 GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKDL 238 (415)
Q Consensus 160 ~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~p-iilV~NK~Dl 238 (415)
..++.++++||||..+.....+. .+. .... ...+|.+++|+|+..+ ............ ..+ .-+|+||+|.
T Consensus 178 ~~~~DvVIIDTaG~l~~d~~l~~-el~-~i~~-~~~pd~vlLVvDa~tg-q~av~~a~~f~~----~l~i~GVIlTKlD~ 249 (425)
T 2ffh_A 178 LEARDLILVDTAGRLQIDEPLMG-ELA-RLKE-VLGPDEVLLVLDAMTG-QEALSVARAFDE----KVGVTGLVLTKLDG 249 (425)
T ss_dssp HTTCSEEEEECCCCSSCCHHHHH-HHH-HHHH-HHCCSEEEEEEEGGGT-THHHHHHHHHHH----HTCCCEEEEESGGG
T ss_pred HCCCCEEEEcCCCcccccHHHHH-HHH-Hhhh-ccCCceEEEEEeccch-HHHHHHHHHHHh----cCCceEEEEeCcCC
Confidence 14567999999996442211111 111 1111 2368899999998755 222222222211 223 5678999997
Q ss_pred CC
Q 014942 239 IK 240 (415)
Q Consensus 239 ~~ 240 (415)
..
T Consensus 250 ~~ 251 (425)
T 2ffh_A 250 DA 251 (425)
T ss_dssp CS
T ss_pred cc
Confidence 53
No 243
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.10 E-value=0.0021 Score=61.40 Aligned_cols=25 Identities=20% Similarity=0.312 Sum_probs=21.9
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCC
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQ 138 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~ 138 (415)
+.+.++|+|..|+|||||+|.|.+.
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 3457999999999999999999854
No 244
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.01 E-value=0.00035 Score=67.83 Aligned_cols=25 Identities=32% Similarity=0.490 Sum_probs=22.5
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCce
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQKL 140 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~~ 140 (415)
..++|+|++|||||||+|.|.+...
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CEEEEECCCCccHHHHHHHHhcccc
Confidence 3799999999999999999998654
No 245
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.98 E-value=0.00014 Score=64.63 Aligned_cols=59 Identities=20% Similarity=0.227 Sum_probs=37.3
Q ss_pred CCCccEEEEEecCCCCHHHHHHHHhCCce-eeeeCCCCceEEeEEEEEeCCCeeEEEEeCCC
Q 014942 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKL-SIVTNKPQTTRHRILGICSGPEYQMILYDTPG 172 (415)
Q Consensus 112 ~~~~~~V~ivG~~~vGKSSLln~l~~~~~-~~~~~~~~tt~~~~~~~~~~~~~~l~liDtpG 172 (415)
.++...|+|+|++|||||||+++|++... ......+.||+.+..+. .++..+.++|...
T Consensus 16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~ 75 (197)
T 3ney_A 16 FQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEE 75 (197)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHH
T ss_pred CCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHH
Confidence 34555899999999999999999986432 12344555666544322 2334455555544
No 246
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.97 E-value=0.0032 Score=59.84 Aligned_cols=21 Identities=24% Similarity=0.347 Sum_probs=19.0
Q ss_pred cEEEEEecCCCCHHHHHHHHh
Q 014942 116 GYVAVLGKPNVGKSTLANQMI 136 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~ 136 (415)
..|+++|++|+||||++..|.
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA 125 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLA 125 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHH
Confidence 479999999999999999885
No 247
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.93 E-value=0.0051 Score=59.72 Aligned_cols=122 Identities=16% Similarity=0.148 Sum_probs=63.5
Q ss_pred ccEEEEEecCCCCHHHHHHHHhCC------ceeeeeCCCCc--------e---EEeEEEEEeC-----------------
Q 014942 115 SGYVAVLGKPNVGKSTLANQMIGQ------KLSIVTNKPQT--------T---RHRILGICSG----------------- 160 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~~~------~~~~~~~~~~t--------t---~~~~~~~~~~----------------- 160 (415)
.-.++++|++|||||||++.|.+. ++......... + +..+..+...
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~tv~e~l~~~ 236 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKRG 236 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhhHHHHHHHH
Confidence 347999999999999999998642 22221111100 0 0001111110
Q ss_pred --CCeeEEEEeCCCCchhhhh---hHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeC
Q 014942 161 --PEYQMILYDTPGIIEKKIH---MLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNK 235 (415)
Q Consensus 161 --~~~~l~liDtpG~~~~~~~---~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK 235 (415)
.+....++||.|+.+.... .+........+.....++-+++|+|++.+...... ...+... .+. .+++++|
T Consensus 237 ~~~~~d~~lldt~Gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDpttglD~~~~-~~~~~~~--~g~-t~iiiTh 312 (359)
T 2og2_A 237 KEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQ-AREFNEV--VGI-TGLILTK 312 (359)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSTTCCSEEEEEEEGGGGGGGHHH-HHHHHHH--TCC-CEEEEES
T ss_pred HhCCCHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCCCCHHHH-HHHHHHh--cCC-eEEEEec
Confidence 1234678999998542221 22211111222334567778889997665543322 2222222 233 4678999
Q ss_pred CCCCC
Q 014942 236 KDLIK 240 (415)
Q Consensus 236 ~Dl~~ 240 (415)
.|-..
T Consensus 313 lD~~~ 317 (359)
T 2og2_A 313 LDGSA 317 (359)
T ss_dssp CTTCS
T ss_pred Ccccc
Confidence 98753
No 248
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.93 E-value=0.00086 Score=63.65 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=20.7
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCc
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~ 139 (415)
..++++|++|||||||+|.|. ..
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-SC
T ss_pred cEEEEECCCCCCHHHHHHHHH-Hh
Confidence 379999999999999999998 53
No 249
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.92 E-value=0.0041 Score=58.97 Aligned_cols=22 Identities=18% Similarity=0.317 Sum_probs=19.9
Q ss_pred cEEEEEecCCCCHHHHHHHHhC
Q 014942 116 GYVAVLGKPNVGKSTLANQMIG 137 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~ 137 (415)
..++++|++||||||+++.|.+
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 3799999999999999999864
No 250
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.80 E-value=0.00085 Score=63.63 Aligned_cols=25 Identities=28% Similarity=0.264 Sum_probs=22.2
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCce
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQKL 140 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~~ 140 (415)
..++++|++|||||||+|.|.+...
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred CeEEEECCCCCcHHHHHHHhccccc
Confidence 3799999999999999999998653
No 251
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=96.78 E-value=0.005 Score=58.12 Aligned_cols=67 Identities=15% Similarity=0.109 Sum_probs=38.6
Q ss_pred CeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhccc--CCCCCEE-EEEeCCCC
Q 014942 162 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDH--KDKLPIL-LVLNKKDL 238 (415)
Q Consensus 162 ~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~--~~~~pii-lV~NK~Dl 238 (415)
.+.++++|||+..... .+...+..||.+|+|+............+.+.++.. ..+.+++ +|+|+++.
T Consensus 156 ~yD~ViiD~p~~~~~~----------~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~ 225 (307)
T 3end_A 156 DTDVVIFDVLGDVVCG----------GFAAPLQHADQAVVVTANDFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRA 225 (307)
T ss_dssp SCSEEEEEECCSSCCG----------GGGGGGGTCSEEEEEECSSHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSC
T ss_pred cCCEEEEeCCCccchH----------HHHHHHHHCCEEEEEecCcHHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCc
Confidence 4688999998743211 112346789999999976532212222223333321 1445544 89999984
No 252
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=96.68 E-value=0.0042 Score=55.37 Aligned_cols=111 Identities=17% Similarity=0.173 Sum_probs=62.7
Q ss_pred EEEEE-ecCCCCHHHHHHHHh------CCceeeeeCCCCceEEeEE-------EEEe-------CCCeeEEEEeCCCC-c
Q 014942 117 YVAVL-GKPNVGKSTLANQMI------GQKLSIVTNKPQTTRHRIL-------GICS-------GPEYQMILYDTPGI-I 174 (415)
Q Consensus 117 ~V~iv-G~~~vGKSSLln~l~------~~~~~~~~~~~~tt~~~~~-------~~~~-------~~~~~l~liDtpG~-~ 174 (415)
.|+|+ +..|+||||+.-.|. | ++..+...++.+..... ..+. ...+.++++|||+. .
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD~D~q~~~~~~~~~~~l~~~vi~~~~l~~l~~~yD~viiD~p~~~~ 80 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQG-ETLLIDGDPNRSATGWGKRGSLPFKVVDERQAAKYAPKYQNIVIDTQARPE 80 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEEEECTTCHHHHHHHHSCCSSEEEEGGGHHHHGGGCSEEEEEEECCCS
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEECCCCCCHHHHhcCCCCCcceeCHHHHHHhhhcCCEEEEeCCCCcC
Confidence 35555 678999999987763 4 55444333321100000 0111 23568999999984 3
Q ss_pred hhhhhhHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCCCC
Q 014942 175 EKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (415)
Q Consensus 175 ~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl~~ 240 (415)
... ....+..+|.+|+++..+.........+.+.++.. .+.++.+|+|++|...
T Consensus 81 ~~~-----------~~~~l~~aD~viiv~~~~~~~~~~~~~~~~~l~~~-~~~~~~vv~N~~~~~~ 134 (209)
T 3cwq_A 81 DED-----------LEALADGCDLLVIPSTPDALALDALMLTIETLQKL-GNNRFRILLTIIPPYP 134 (209)
T ss_dssp SSH-----------HHHHHHTSSEEEEEECSSHHHHHHHHHHHHHHHHT-CSSSEEEEECSBCCTT
T ss_pred cHH-----------HHHHHHHCCEEEEEecCCchhHHHHHHHHHHHHhc-cCCCEEEEEEecCCcc
Confidence 211 22346789999999986532222222233333331 2567899999999754
No 253
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.66 E-value=0.0054 Score=57.87 Aligned_cols=118 Identities=18% Similarity=0.229 Sum_probs=60.9
Q ss_pred ccEEEEEecCCCCHHHHHHHHhC------CceeeeeCCCCce-----------EEeEEEE------------------Ee
Q 014942 115 SGYVAVLGKPNVGKSTLANQMIG------QKLSIVTNKPQTT-----------RHRILGI------------------CS 159 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~~------~~~~~~~~~~~tt-----------~~~~~~~------------------~~ 159 (415)
...++++|.+|+||||++..|.+ .++..+...+... ....... ..
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~~ 177 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKAR 177 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHHH
Confidence 34788999999999999988853 3332222111100 0000000 00
Q ss_pred CCCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCC-EEEEEeCCCC
Q 014942 160 GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKDL 238 (415)
Q Consensus 160 ~~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~p-iilV~NK~Dl 238 (415)
..++.++++||||..+.....+.. +.. .... -.+|.+++|+|+..+ ........... ...+ .-+|+||+|.
T Consensus 178 ~~~~D~viiDtpp~~~~d~~~~~~-l~~-~~~~-~~~~~~~lv~~~~~~-~~~~~~~~~~~----~~~~i~givlnk~d~ 249 (295)
T 1ls1_A 178 LEARDLILVDTAGRLQIDEPLMGE-LAR-LKEV-LGPDEVLLVLDAMTG-QEALSVARAFD----EKVGVTGLVLTKLDG 249 (295)
T ss_dssp HHTCCEEEEECCCCSSCCHHHHHH-HHH-HHHH-HCCSEEEEEEEGGGT-HHHHHHHHHHH----HHTCCCEEEEECGGG
T ss_pred hCCCCEEEEeCCCCccccHHHHHH-HHH-Hhhh-cCCCEEEEEEeCCCc-HHHHHHHHHHh----hcCCCCEEEEECCCC
Confidence 134689999999854322121211 111 1111 257888999998743 22222222211 1223 4578999997
Q ss_pred CC
Q 014942 239 IK 240 (415)
Q Consensus 239 ~~ 240 (415)
..
T Consensus 250 ~~ 251 (295)
T 1ls1_A 250 DA 251 (295)
T ss_dssp CS
T ss_pred Cc
Confidence 54
No 254
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=96.55 E-value=0.00026 Score=71.51 Aligned_cols=111 Identities=12% Similarity=0.089 Sum_probs=57.9
Q ss_pred ccEEEEEecCCCCHHHHHHHHhCCceeeeeCCCCceEEeEE----EEEeCCCeeEEEEeCCCCchhhhhhHhHH---HHH
Q 014942 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRIL----GICSGPEYQMILYDTPGIIEKKIHMLDSM---MMK 187 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~~~~~~~~~~~~~tt~~~~~----~~~~~~~~~l~liDtpG~~~~~~~~l~~~---~~~ 187 (415)
...|+++|.+|+||||+.++|...-.. ... .|..... ...........+||+.| ...+...... ...
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~---~~~-~t~~~~~d~~r~~~~g~~~~~~ifd~~g--~~~~r~re~~~~~~l~ 112 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNF---IGV-PTREFNVGQYRRDMVKTYKSFEFFLPDN--EEGLKIRKQCALAALN 112 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH---TTC-CEEEEEHHHHHHHHHCSCCCGGGGCTTC--HHHHHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhc---cCC-CceEEecchhhhhhccCCCcccccCCCC--HHHHHHHHHHHHHHHH
Confidence 448999999999999999998753210 000 0110000 00001112335678877 3222111111 122
Q ss_pred HHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEE
Q 014942 188 NVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVL 233 (415)
Q Consensus 188 ~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~ 233 (415)
....++..+.+.++|+|+++........+.+.++. ...+++.+-
T Consensus 113 ~~~~~l~~~~G~~vV~D~tn~~~~~R~~~~~~~~~--~~~~vv~l~ 156 (469)
T 1bif_A 113 DVRKFLSEEGGHVAVFDATNTTRERRAMIFNFGEQ--NGYKTFFVE 156 (469)
T ss_dssp HHHHHHHTTCCSEEEEESCCCSHHHHHHHHHHHHH--HTCEEEEEE
T ss_pred HHHHHHHhCCCCEEEEeCCCCCHHHHHHHHHHHHh--cCCcEEEEE
Confidence 33555666788899999987765444555554444 233444443
No 255
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.44 E-value=0.0083 Score=59.77 Aligned_cols=24 Identities=33% Similarity=0.318 Sum_probs=20.4
Q ss_pred CCccEEEEEecCCCCHHHHHHHHh
Q 014942 113 HKSGYVAVLGKPNVGKSTLANQMI 136 (415)
Q Consensus 113 ~~~~~V~ivG~~~vGKSSLln~l~ 136 (415)
.+...|+|+|.+++|||+|+|.|+
T Consensus 65 ~~v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 65 KEVVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHH
T ss_pred CceEEEEEECCCCCchhHHHHHHH
Confidence 355689999999999999999664
No 256
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.27 E-value=0.002 Score=55.92 Aligned_cols=24 Identities=25% Similarity=0.495 Sum_probs=21.2
Q ss_pred ccEEEEEecCCCCHHHHHHHHhCC
Q 014942 115 SGYVAVLGKPNVGKSTLANQMIGQ 138 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~~~ 138 (415)
...++|+|++|||||||++.|.+.
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 347999999999999999999864
No 257
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=96.19 E-value=0.0031 Score=57.20 Aligned_cols=65 Identities=17% Similarity=0.208 Sum_probs=39.2
Q ss_pred CCeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCC
Q 014942 161 PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKD 237 (415)
Q Consensus 161 ~~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~D 237 (415)
..+.++++|||+..... ....+..+|.+|++++.+.........+.+.+... .-..+.+|+|+++
T Consensus 130 ~~yD~viiD~pp~~~~~-----------~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~~~~~-~~~~~~~v~N~~~ 194 (254)
T 3kjh_A 130 DKKEAVVMDMGAGIEHL-----------TRGTAKAVDMMIAVIEPNLNSIKTGLNIEKLAGDL-GIKKVRYVINKVR 194 (254)
T ss_dssp TCCSEEEEEECTTCTTC-----------CHHHHTTCSEEEEEECSSHHHHHHHHHHHHHHHHH-TCSCEEEEEEEEC
T ss_pred CCCCEEEEeCCCcccHH-----------HHHHHHHCCEEEEecCCCHHHHHHHHHHHHHHHHc-CCccEEEEEeCCC
Confidence 45689999998743211 22336789999999987532222222333333332 2245789999998
No 258
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.14 E-value=0.00099 Score=58.60 Aligned_cols=38 Identities=26% Similarity=0.288 Sum_probs=26.4
Q ss_pred EEEEEecCCCCHHHHHHHHhCCce-eeeeCCCCceEEeE
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQKL-SIVTNKPQTTRHRI 154 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~~~-~~~~~~~~tt~~~~ 154 (415)
-|+|+|++|||||||+++|+.... ......+.|||.+-
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR 41 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPR 41 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCC
Confidence 389999999999999999975421 12234555665543
No 259
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.10 E-value=0.0024 Score=55.59 Aligned_cols=22 Identities=32% Similarity=0.723 Sum_probs=20.1
Q ss_pred EEEEEecCCCCHHHHHHHHhCC
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQ 138 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~ 138 (415)
+++|+|++|+|||||++.|.+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998764
No 260
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=95.98 E-value=0.072 Score=47.92 Aligned_cols=67 Identities=16% Similarity=0.104 Sum_probs=40.8
Q ss_pred eeEEEEeCCCCchhhhhhHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccC-CCCCEEEEEeCCCCCC
Q 014942 163 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHK-DKLPILLVLNKKDLIK 240 (415)
Q Consensus 163 ~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~-~~~piilV~NK~Dl~~ 240 (415)
+.++++|||+.... .....+..+|.+|+++............+.+.++... ....+.+|+|+++...
T Consensus 119 yD~viiD~p~~~~~-----------~~~~~l~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~~ 186 (245)
T 3ea0_A 119 YDYIIVDFGASIDH-----------VGVWVLEHLDELCIVTTPSLQSLRRAGQLLKLCKEFEKPISRIEIILNRADTNS 186 (245)
T ss_dssp CSEEEEEEESSCCT-----------THHHHGGGCSEEEEEECSSHHHHHHHHHHHHHHHTCSSCCSCEEEEEESTTSCT
T ss_pred CCEEEEeCCCCCch-----------HHHHHHHHCCEEEEEecCcHHHHHHHHHHHHHHHHhCCCccceEEEEecCCCCC
Confidence 57899999874321 1223467899999999865322222233334444322 2355889999998654
No 261
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.92 E-value=0.0029 Score=55.89 Aligned_cols=22 Identities=32% Similarity=0.472 Sum_probs=20.3
Q ss_pred EEEEEecCCCCHHHHHHHHhCC
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQ 138 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~ 138 (415)
.++|+|++|+|||||++.|.+.
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 6999999999999999999863
No 262
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=95.84 E-value=0.057 Score=50.86 Aligned_cols=65 Identities=12% Similarity=0.156 Sum_probs=37.9
Q ss_pred eeEEEEeCCCCchhhhhhHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCE-EEEEeCCCCC
Q 014942 163 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPI-LLVLNKKDLI 239 (415)
Q Consensus 163 ~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~pi-ilV~NK~Dl~ 239 (415)
+.++|+|||+..... + .......+|.+|+|+..............+.++. .+.++ -+|+|++|..
T Consensus 214 yD~VIIDtpp~~~~~-d---------~~~l~~~ad~vilV~~~~~~~~~~~~~~~~~l~~--~~~~~~GvVlN~~~~~ 279 (299)
T 3cio_A 214 YDLVIVDTPPMLAVS-D---------AAVVGRSVGTSLLVARFGLNTAKEVSLSMQRLEQ--AGVNIKGAILNGVIKR 279 (299)
T ss_dssp CSEEEEECCCTTTCT-H---------HHHHGGGCSEEEEEEETTTSCTTHHHHHHHHHHH--TTCCCCCEEEEECCCC
T ss_pred CCEEEEcCCCCchhH-H---------HHHHHHHCCEEEEEEcCCCChHHHHHHHHHHHHh--CCCCeEEEEEeCCccC
Confidence 368899998853211 0 1112467889999888765443333444444444 34443 3788998864
No 263
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.80 E-value=0.0056 Score=53.17 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=21.1
Q ss_pred cEEEEEecCCCCHHHHHHHHhCC
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~ 138 (415)
..|+|+|++|+|||||++.|.+.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 37999999999999999999875
No 264
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=95.75 E-value=0.053 Score=50.75 Aligned_cols=66 Identities=15% Similarity=0.158 Sum_probs=41.1
Q ss_pred eeEEEEeCCCCchhhhhhHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCC-CEEEEEeCCCCCC
Q 014942 163 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKL-PILLVLNKKDLIK 240 (415)
Q Consensus 163 ~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~-piilV~NK~Dl~~ 240 (415)
+.++|+|||+..... .+......||.+|+|+..............+.++. .+. .+-+|+|++|...
T Consensus 202 yD~VIIDtpp~~~~~----------da~~l~~~aD~vllVv~~~~~~~~~~~~~~~~l~~--~g~~~~GvVlN~v~~~~ 268 (286)
T 3la6_A 202 YDLVLIDTPPILAVT----------DAAIVGRHVGTTLMVARYAVNTLKEVETSLSRFEQ--NGIPVKGVILNSIFRRA 268 (286)
T ss_dssp CSEEEEECCCTTTCT----------HHHHHTTTCSEEEEEEETTTSBHHHHHHHHHHHHH--TTCCCCEEEEEEECCCC
T ss_pred CCEEEEcCCCCcchH----------HHHHHHHHCCeEEEEEeCCCCcHHHHHHHHHHHHh--CCCCEEEEEEcCccccc
Confidence 368999999853211 11223567999999998865544434444444444 333 4568899998643
No 265
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.74 E-value=0.0042 Score=55.17 Aligned_cols=22 Identities=32% Similarity=0.410 Sum_probs=20.4
Q ss_pred EEEEEecCCCCHHHHHHHHhCC
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQ 138 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~ 138 (415)
.++|+|++|+|||||++.|.|.
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 7999999999999999999874
No 266
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.72 E-value=0.045 Score=54.43 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=20.4
Q ss_pred cEEEEEecCCCCHHHHHHHHhCC
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~ 138 (415)
.-|++.|+||+|||+|+.++.+.
T Consensus 216 rGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 216 KGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 36999999999999999999753
No 267
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.71 E-value=0.005 Score=54.09 Aligned_cols=23 Identities=13% Similarity=0.336 Sum_probs=20.8
Q ss_pred cEEEEEecCCCCHHHHHHHHhCC
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~ 138 (415)
..++|+|++|||||||++.|.+.
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 37999999999999999999864
No 268
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.71 E-value=0.0042 Score=55.76 Aligned_cols=24 Identities=25% Similarity=0.427 Sum_probs=21.2
Q ss_pred ccEEEEEecCCCCHHHHHHHHhCC
Q 014942 115 SGYVAVLGKPNVGKSTLANQMIGQ 138 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~~~ 138 (415)
...++|+|++|+|||||++.|.+.
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 347999999999999999999874
No 269
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.66 E-value=0.016 Score=49.53 Aligned_cols=23 Identities=22% Similarity=0.556 Sum_probs=20.2
Q ss_pred cEEEEEecCCCCHHHHHHHHhCC
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~ 138 (415)
..++|.|++|+|||+|+..+...
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999998653
No 270
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.63 E-value=0.0044 Score=54.04 Aligned_cols=22 Identities=27% Similarity=0.508 Sum_probs=20.0
Q ss_pred EEEEEecCCCCHHHHHHHHhCC
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQ 138 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~ 138 (415)
.++|+|++|||||||++.|.+.
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999864
No 271
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.63 E-value=0.0053 Score=54.49 Aligned_cols=25 Identities=40% Similarity=0.559 Sum_probs=21.6
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCC
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQ 138 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~ 138 (415)
+...|+|+|++|+|||||++.|.+.
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3348999999999999999999764
No 272
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=95.58 E-value=0.083 Score=49.27 Aligned_cols=68 Identities=15% Similarity=0.080 Sum_probs=38.6
Q ss_pred CeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhc----ccCCCCCE-EEEEeCC
Q 014942 162 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVG----DHKDKLPI-LLVLNKK 236 (415)
Q Consensus 162 ~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~----~~~~~~pi-ilV~NK~ 236 (415)
.+.++++|||+..... ...++..+|.+|+++............+.+.+. ....+.++ -+|+|+.
T Consensus 154 ~yD~IiiD~pp~~~~~-----------~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~ 222 (298)
T 2oze_A 154 DYDLIIIDTVPTPSVY-----------TNNAIVASDYVMIPLQAEEESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLV 222 (298)
T ss_dssp GCSEEEEEECSSCSHH-----------HHHHHHHCSEEEEEECGGGCCHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEES
T ss_pred CCCEEEEECCCCccHH-----------HHHHHHHCCeEEEEecCcHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEE
Confidence 3578999999853211 112244699999999876433222222222221 11245664 4899999
Q ss_pred CCCC
Q 014942 237 DLIK 240 (415)
Q Consensus 237 Dl~~ 240 (415)
|...
T Consensus 223 ~~~~ 226 (298)
T 2oze_A 223 DTDS 226 (298)
T ss_dssp CTTC
T ss_pred CCCc
Confidence 9754
No 273
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.57 E-value=0.0061 Score=54.21 Aligned_cols=24 Identities=21% Similarity=0.350 Sum_probs=21.2
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCc
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~ 139 (415)
..|+|+|++|||||||++.|.+..
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHST
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 479999999999999999998653
No 274
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=95.56 E-value=0.049 Score=49.50 Aligned_cols=66 Identities=17% Similarity=0.209 Sum_probs=39.8
Q ss_pred CeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccC-------CCCCEEEEEe
Q 014942 162 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHK-------DKLPILLVLN 234 (415)
Q Consensus 162 ~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~-------~~~piilV~N 234 (415)
.+.++++|||+.... .+...+..+|.+|+|++.+.........+.+.+.... ...++.+|+|
T Consensus 113 ~yD~viiD~p~~~~~-----------~~~~~l~~ad~vi~v~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N 181 (260)
T 3q9l_A 113 DFEFIVCDSPAGIET-----------GALMALYFADEAIITTNPEVSSVRDSDRILGILASKSRRAENGEEPIKEHLLLT 181 (260)
T ss_dssp TCSEEEEECCSSSSH-----------HHHHHHHTCSEEEEEECSSHHHHHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEE
T ss_pred CCCEEEEcCCCCCCH-----------HHHHHHHhCCEEEEEecCChhHHHHHHHHHHHHHHhccccccccCCcceEEEEe
Confidence 578999999974321 1233467899999999875322222223334443321 1246789999
Q ss_pred CCCC
Q 014942 235 KKDL 238 (415)
Q Consensus 235 K~Dl 238 (415)
++|.
T Consensus 182 ~~~~ 185 (260)
T 3q9l_A 182 RYNP 185 (260)
T ss_dssp EECH
T ss_pred cCCc
Confidence 9984
No 275
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.55 E-value=0.0059 Score=55.02 Aligned_cols=24 Identities=21% Similarity=0.311 Sum_probs=21.4
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCc
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~ 139 (415)
..++|+|++|||||||++.|.+..
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 379999999999999999998743
No 276
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.54 E-value=0.0066 Score=55.28 Aligned_cols=24 Identities=29% Similarity=0.465 Sum_probs=21.6
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCc
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~ 139 (415)
-.++|+|++|+|||||++.|.|-.
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 379999999999999999998853
No 277
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=95.54 E-value=0.0071 Score=54.61 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=21.1
Q ss_pred EEEEEecCCCCHHHHHHHHhCCc
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQK 139 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~~ 139 (415)
.++|+|+.|+|||||++.|.|-.
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 79999999999999999998853
No 278
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.46 E-value=0.0074 Score=51.88 Aligned_cols=21 Identities=33% Similarity=0.547 Sum_probs=19.1
Q ss_pred EEEEEecCCCCHHHHHHHHhC
Q 014942 117 YVAVLGKPNVGKSTLANQMIG 137 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~ 137 (415)
.++++|++|+|||||++.+.+
T Consensus 11 i~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHcc
Confidence 799999999999999998664
No 279
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=95.30 E-value=0.0089 Score=54.63 Aligned_cols=24 Identities=29% Similarity=0.517 Sum_probs=21.8
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCc
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~ 139 (415)
-.++|+|+.|+|||||++.|.|-.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 489999999999999999999853
No 280
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.30 E-value=0.0089 Score=54.48 Aligned_cols=24 Identities=33% Similarity=0.578 Sum_probs=21.9
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCc
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~ 139 (415)
-.++|+|++|+|||||++.|.|-.
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 389999999999999999999864
No 281
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.26 E-value=0.0088 Score=52.91 Aligned_cols=23 Identities=26% Similarity=0.367 Sum_probs=20.8
Q ss_pred cEEEEEecCCCCHHHHHHHHhCC
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~ 138 (415)
..|+|+|++|+|||||++.|.+.
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999874
No 282
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.26 E-value=0.0089 Score=52.49 Aligned_cols=24 Identities=21% Similarity=0.389 Sum_probs=21.2
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCc
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~ 139 (415)
..|+|+|++|+||||+++.|.+.-
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 479999999999999999997653
No 283
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=95.24 E-value=0.0094 Score=55.20 Aligned_cols=24 Identities=21% Similarity=0.320 Sum_probs=21.6
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCc
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~ 139 (415)
-.++|+|+.|+|||||++.|.|-.
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 379999999999999999999853
No 284
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.23 E-value=0.0096 Score=54.43 Aligned_cols=24 Identities=25% Similarity=0.228 Sum_probs=21.7
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCc
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~ 139 (415)
-.++|+|++|+|||||++.|.|-.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 379999999999999999999853
No 285
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=95.22 E-value=0.0095 Score=55.61 Aligned_cols=24 Identities=42% Similarity=0.487 Sum_probs=21.6
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCc
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~ 139 (415)
-.++|+|+.|+|||||++.|.|-.
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC
Confidence 379999999999999999999853
No 286
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=95.22 E-value=0.0097 Score=54.92 Aligned_cols=24 Identities=33% Similarity=0.446 Sum_probs=21.6
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCc
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~ 139 (415)
-.++|+|+.|+|||||++.|.|-.
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 379999999999999999998853
No 287
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=95.21 E-value=0.0097 Score=54.58 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=21.7
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCc
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~ 139 (415)
-.++|+|++|+|||||++.|.|-.
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 379999999999999999998853
No 288
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.19 E-value=0.0099 Score=55.21 Aligned_cols=24 Identities=38% Similarity=0.519 Sum_probs=21.7
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCc
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~ 139 (415)
-.++|+|++|+|||||++.|.|-.
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 379999999999999999999853
No 289
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.19 E-value=0.0088 Score=50.97 Aligned_cols=24 Identities=29% Similarity=0.297 Sum_probs=21.1
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCc
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~ 139 (415)
-.++++|+.|+|||||++.|.+.-
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 379999999999999999998743
No 290
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.18 E-value=0.01 Score=53.77 Aligned_cols=24 Identities=29% Similarity=0.505 Sum_probs=21.7
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCc
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~ 139 (415)
-.++|+|+.|+|||||++.|.|-.
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 379999999999999999999853
No 291
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.17 E-value=0.011 Score=50.49 Aligned_cols=23 Identities=22% Similarity=0.361 Sum_probs=20.2
Q ss_pred ccEEEEEecCCCCHHHHHHHHhC
Q 014942 115 SGYVAVLGKPNVGKSTLANQMIG 137 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~~ 137 (415)
...|+|+|++|+||||+++.|.+
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 34799999999999999999864
No 292
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=95.16 E-value=0.0098 Score=53.35 Aligned_cols=23 Identities=26% Similarity=0.320 Sum_probs=21.2
Q ss_pred EEEEEecCCCCHHHHHHHHhCCc
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQK 139 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~~ 139 (415)
.++|+|+.|+|||||++.|.|-.
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 79999999999999999998853
No 293
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.15 E-value=0.011 Score=53.75 Aligned_cols=21 Identities=29% Similarity=0.525 Sum_probs=19.9
Q ss_pred cEEEEEecCCCCHHHHHHHHh
Q 014942 116 GYVAVLGKPNVGKSTLANQMI 136 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~ 136 (415)
..|+|+|++|+|||||++.|.
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 489999999999999999998
No 294
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.11 E-value=0.011 Score=53.96 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=21.2
Q ss_pred EEEEEecCCCCHHHHHHHHhCCc
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQK 139 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~~ 139 (415)
.++|+|+.|+|||||++.|.|-.
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999853
No 295
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=95.10 E-value=0.011 Score=54.81 Aligned_cols=24 Identities=29% Similarity=0.307 Sum_probs=21.6
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCc
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~ 139 (415)
-.++|+|+.|+|||||++.|.|-.
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEcCCCCcHHHHHHHHHcCC
Confidence 379999999999999999998853
No 296
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=95.08 E-value=0.011 Score=54.61 Aligned_cols=23 Identities=30% Similarity=0.394 Sum_probs=21.2
Q ss_pred cEEEEEecCCCCHHHHHHHHhCC
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~ 138 (415)
-.++|+|++|+|||||++.|.|-
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 38999999999999999999985
No 297
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.06 E-value=0.01 Score=54.87 Aligned_cols=25 Identities=40% Similarity=0.493 Sum_probs=21.8
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCC
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQ 138 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~ 138 (415)
+...++|+|++|+|||||++.|.+.
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHh
Confidence 3458999999999999999999874
No 298
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=95.06 E-value=0.011 Score=54.20 Aligned_cols=23 Identities=35% Similarity=0.540 Sum_probs=21.2
Q ss_pred EEEEEecCCCCHHHHHHHHhCCc
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQK 139 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~~ 139 (415)
.++|+|+.|+|||||++.|.|-.
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 79999999999999999999853
No 299
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.06 E-value=0.012 Score=49.86 Aligned_cols=20 Identities=30% Similarity=0.534 Sum_probs=18.7
Q ss_pred cEEEEEecCCCCHHHHHHHH
Q 014942 116 GYVAVLGKPNVGKSTLANQM 135 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l 135 (415)
+.|+|+|.+||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 36999999999999999999
No 300
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=95.04 E-value=0.012 Score=54.12 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=21.0
Q ss_pred EEEEEecCCCCHHHHHHHHhCC
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQ 138 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~ 138 (415)
.++|+|+.|+|||||++.|.|-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999985
No 301
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.04 E-value=0.012 Score=54.39 Aligned_cols=24 Identities=17% Similarity=0.209 Sum_probs=21.6
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCc
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~ 139 (415)
-.++|+|+.|+|||||++.|.|-.
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 379999999999999999999853
No 302
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.04 E-value=0.011 Score=52.14 Aligned_cols=24 Identities=29% Similarity=0.462 Sum_probs=20.8
Q ss_pred CccEEEEEecCCCCHHHHHHHHhC
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~ 137 (415)
+...|+|+|++|||||||++.|..
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHH
Confidence 334799999999999999999964
No 303
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=95.02 E-value=0.012 Score=54.82 Aligned_cols=24 Identities=29% Similarity=0.317 Sum_probs=21.7
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCc
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~ 139 (415)
-.++|+|++|+|||||++.|.|-.
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 379999999999999999999853
No 304
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.99 E-value=0.19 Score=49.21 Aligned_cols=22 Identities=32% Similarity=0.478 Sum_probs=20.0
Q ss_pred EEEEEecCCCCHHHHHHHHhCC
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQ 138 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~ 138 (415)
-|++.|+||+|||+|+.++.+.
T Consensus 184 GvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 184 GVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CEEEESCSSSSHHHHHHHHHHH
T ss_pred ceEEeCCCCCCHHHHHHHHHHh
Confidence 6999999999999999999753
No 305
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=94.99 E-value=0.012 Score=54.58 Aligned_cols=23 Identities=35% Similarity=0.556 Sum_probs=21.4
Q ss_pred cEEEEEecCCCCHHHHHHHHhCC
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~ 138 (415)
-.++|+|+.|+|||||++.|.|-
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 37999999999999999999985
No 306
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=94.98 E-value=0.012 Score=54.96 Aligned_cols=24 Identities=25% Similarity=0.266 Sum_probs=21.6
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCc
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~ 139 (415)
-.++|+|+.|+|||||++.|.|-.
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 379999999999999999999853
No 307
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=94.97 E-value=0.043 Score=51.45 Aligned_cols=21 Identities=19% Similarity=0.278 Sum_probs=18.4
Q ss_pred EEEEEecCCCCHHHHHHHHhC
Q 014942 117 YVAVLGKPNVGKSTLANQMIG 137 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~ 137 (415)
.|++.|+||+|||+|+.++..
T Consensus 38 ~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 38 ILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 577779999999999999864
No 308
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.96 E-value=0.01 Score=50.62 Aligned_cols=21 Identities=29% Similarity=0.460 Sum_probs=19.6
Q ss_pred EEEEEecCCCCHHHHHHHHhC
Q 014942 117 YVAVLGKPNVGKSTLANQMIG 137 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~ 137 (415)
.|+|+|++|+||||+++.|.+
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999875
No 309
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.96 E-value=0.0089 Score=53.36 Aligned_cols=22 Identities=36% Similarity=0.265 Sum_probs=20.8
Q ss_pred EEEEEecCCCCHHHHHHHHhCC
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQ 138 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~ 138 (415)
.++|+|+.|+|||||++.|.|.
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7999999999999999999886
No 310
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.95 E-value=0.012 Score=51.83 Aligned_cols=22 Identities=32% Similarity=0.475 Sum_probs=20.0
Q ss_pred cEEEEEecCCCCHHHHHHHHhC
Q 014942 116 GYVAVLGKPNVGKSTLANQMIG 137 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~ 137 (415)
..|+|+|++|+|||||++.|.+
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999865
No 311
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=94.92 E-value=0.17 Score=45.78 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=19.8
Q ss_pred cEEEEEecCCCCHHHHHHHHhC
Q 014942 116 GYVAVLGKPNVGKSTLANQMIG 137 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~ 137 (415)
..|++.|+||+|||+|+.++..
T Consensus 40 ~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999865
No 312
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.90 E-value=0.015 Score=50.34 Aligned_cols=24 Identities=25% Similarity=0.299 Sum_probs=21.2
Q ss_pred ccEEEEEecCCCCHHHHHHHHhCC
Q 014942 115 SGYVAVLGKPNVGKSTLANQMIGQ 138 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~~~ 138 (415)
.+.++|+|++|+|||||+++|++.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 357999999999999999999864
No 313
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=94.89 E-value=0.013 Score=53.87 Aligned_cols=23 Identities=43% Similarity=0.686 Sum_probs=21.3
Q ss_pred EEEEEecCCCCHHHHHHHHhCCc
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQK 139 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~~ 139 (415)
.++|+|+.|+|||||++.|.|-.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999853
No 314
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=94.86 E-value=0.014 Score=54.15 Aligned_cols=24 Identities=33% Similarity=0.393 Sum_probs=21.6
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCc
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~ 139 (415)
-.++|+|+.|+|||||++.|.|-.
T Consensus 34 e~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 379999999999999999998853
No 315
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.86 E-value=0.012 Score=51.09 Aligned_cols=21 Identities=29% Similarity=0.453 Sum_probs=19.4
Q ss_pred EEEEEecCCCCHHHHHHHHhC
Q 014942 117 YVAVLGKPNVGKSTLANQMIG 137 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~ 137 (415)
.++++|++|+|||||++.|.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 589999999999999999975
No 316
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=94.84 E-value=0.01 Score=52.08 Aligned_cols=22 Identities=36% Similarity=0.481 Sum_probs=20.0
Q ss_pred EEEEEecCCCCHHHHHHHHhCC
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQ 138 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~ 138 (415)
.++++|++|+|||||++.|.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 6899999999999999998764
No 317
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.80 E-value=0.015 Score=49.32 Aligned_cols=21 Identities=24% Similarity=0.205 Sum_probs=19.2
Q ss_pred EEEEEecCCCCHHHHHHHHhC
Q 014942 117 YVAVLGKPNVGKSTLANQMIG 137 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~ 137 (415)
.|+|+|.+||||||+.+.|..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999864
No 318
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.79 E-value=0.014 Score=55.37 Aligned_cols=25 Identities=44% Similarity=0.672 Sum_probs=21.4
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCC
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQ 138 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~ 138 (415)
+.-.++|+|++|+|||||++.|.+-
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhh
Confidence 3448999999999999999998753
No 319
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=94.78 E-value=0.019 Score=49.70 Aligned_cols=25 Identities=24% Similarity=0.506 Sum_probs=21.6
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCC
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQ 138 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~ 138 (415)
+...|+++|.+|+||||+.+.|...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4458999999999999999998654
No 320
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.75 E-value=0.022 Score=50.13 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=20.9
Q ss_pred CccEEEEEecCCCCHHHHHHHHhC
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~ 137 (415)
+...|+|.|.+|+||||+.+.|..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 445899999999999999999864
No 321
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.72 E-value=0.14 Score=46.95 Aligned_cols=24 Identities=29% Similarity=0.383 Sum_probs=20.9
Q ss_pred CccEEEEEecCCCCHHHHHHHHhC
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~ 137 (415)
....+++.|+||+|||+|+.++..
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~ 86 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAE 86 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 345799999999999999999875
No 322
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=94.67 E-value=0.017 Score=53.56 Aligned_cols=23 Identities=35% Similarity=0.471 Sum_probs=21.4
Q ss_pred EEEEEecCCCCHHHHHHHHhCCc
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQK 139 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~~ 139 (415)
.++|+|+.|+|||||++.|.|-.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999864
No 323
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.67 E-value=0.017 Score=49.79 Aligned_cols=22 Identities=32% Similarity=0.462 Sum_probs=19.8
Q ss_pred cEEEEEecCCCCHHHHHHHHhC
Q 014942 116 GYVAVLGKPNVGKSTLANQMIG 137 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~ 137 (415)
..|+|.|.+||||||+.+.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999864
No 324
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.66 E-value=0.015 Score=51.81 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=20.4
Q ss_pred cEEEEEecCCCCHHHHHHHHhC
Q 014942 116 GYVAVLGKPNVGKSTLANQMIG 137 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~ 137 (415)
-.++|+|++|+|||||++.|.+
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999986
No 325
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.63 E-value=0.0084 Score=51.80 Aligned_cols=22 Identities=27% Similarity=0.572 Sum_probs=20.3
Q ss_pred EEEEEecCCCCHHHHHHHHhCC
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQ 138 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~ 138 (415)
.|+|+|++|+|||||++.|.+.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999864
No 326
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.63 E-value=0.012 Score=53.04 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=15.7
Q ss_pred cEEEEEecCCCCHHHHHHHHh-CC
Q 014942 116 GYVAVLGKPNVGKSTLANQMI-GQ 138 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~-~~ 138 (415)
..++|+|++|||||||++.|. +.
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC--
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 379999999999999999999 65
No 327
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=94.60 E-value=0.019 Score=54.03 Aligned_cols=25 Identities=28% Similarity=0.490 Sum_probs=22.1
Q ss_pred ccEEEEEecCCCCHHHHHHHHhCCc
Q 014942 115 SGYVAVLGKPNVGKSTLANQMIGQK 139 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~~~~ 139 (415)
.-.++|+|+.|+|||||++.|.|-.
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3489999999999999999999864
No 328
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.59 E-value=0.021 Score=48.85 Aligned_cols=22 Identities=18% Similarity=0.302 Sum_probs=19.7
Q ss_pred cEEEEEecCCCCHHHHHHHHhC
Q 014942 116 GYVAVLGKPNVGKSTLANQMIG 137 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~ 137 (415)
..|+++|.+|+||||+.+.|..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999864
No 329
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.58 E-value=0.017 Score=52.66 Aligned_cols=24 Identities=25% Similarity=0.425 Sum_probs=21.0
Q ss_pred CccEEEEEecCCCCHHHHHHHHhC
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~ 137 (415)
+...|+|+|+.|+|||||++.|.+
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 334799999999999999999876
No 330
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=94.58 E-value=0.03 Score=46.51 Aligned_cols=23 Identities=26% Similarity=0.192 Sum_probs=20.1
Q ss_pred cEEEEEecCCCCHHHHHHHHhCC
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~ 138 (415)
..|.+.|++|+|||+++.++...
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCEEEECCCCCCHHHHHHHHHHh
Confidence 36999999999999999998653
No 331
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.57 E-value=0.017 Score=54.87 Aligned_cols=25 Identities=32% Similarity=0.279 Sum_probs=21.6
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCC
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQ 138 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~ 138 (415)
+...|+|+|++|+|||||++.|.+.
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHhh
Confidence 3448999999999999999999763
No 332
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.57 E-value=0.068 Score=52.97 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=19.9
Q ss_pred EEEEEecCCCCHHHHHHHHhCC
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQ 138 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~ 138 (415)
-|++.|+||+|||+|+.++.+.
T Consensus 208 GiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 208 GVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp EEEEESCTTTTHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5999999999999999999753
No 333
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=94.55 E-value=0.019 Score=55.59 Aligned_cols=24 Identities=25% Similarity=0.454 Sum_probs=21.6
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCc
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~ 139 (415)
-.++|+|++|||||||++.|.|-.
T Consensus 31 e~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCchHHHHHHHHhcCC
Confidence 379999999999999999998854
No 334
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=94.54 E-value=0.1 Score=48.23 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=19.9
Q ss_pred cEEEEEecCCCCHHHHHHHHhC
Q 014942 116 GYVAVLGKPNVGKSTLANQMIG 137 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~ 137 (415)
..+++.|+||+|||+|+.++..
T Consensus 52 ~~~ll~G~~GtGKT~la~~la~ 73 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLLAKAVAT 73 (285)
T ss_dssp SEEEEESSSSSSHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 4699999999999999999964
No 335
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.54 E-value=0.027 Score=49.64 Aligned_cols=24 Identities=29% Similarity=0.427 Sum_probs=21.5
Q ss_pred ccEEEEEecCCCCHHHHHHHHhCC
Q 014942 115 SGYVAVLGKPNVGKSTLANQMIGQ 138 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~~~ 138 (415)
...|+|+|.+|+||||+++.|.+.
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 347999999999999999999875
No 336
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.54 E-value=0.019 Score=48.94 Aligned_cols=21 Identities=38% Similarity=0.621 Sum_probs=19.5
Q ss_pred EEEEEecCCCCHHHHHHHHhC
Q 014942 117 YVAVLGKPNVGKSTLANQMIG 137 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~ 137 (415)
.|+|+|.||+||||+.+.|..
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 689999999999999999975
No 337
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.54 E-value=0.018 Score=50.69 Aligned_cols=24 Identities=33% Similarity=0.281 Sum_probs=20.8
Q ss_pred ccEEEEEecCCCCHHHHHHHHhCC
Q 014942 115 SGYVAVLGKPNVGKSTLANQMIGQ 138 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~~~ 138 (415)
...|+|+|++|+||||+++.|.+.
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 347999999999999999998653
No 338
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=94.51 E-value=0.017 Score=55.97 Aligned_cols=25 Identities=36% Similarity=0.436 Sum_probs=21.8
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCC
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQ 138 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~ 138 (415)
+.+.|+|+|++|+|||||++.+++.
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhc
Confidence 3458999999999999999999763
No 339
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=94.50 E-value=0.012 Score=55.71 Aligned_cols=25 Identities=24% Similarity=0.336 Sum_probs=22.0
Q ss_pred ccEEEEEecCCCCHHHHHHHHhCCc
Q 014942 115 SGYVAVLGKPNVGKSTLANQMIGQK 139 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~~~~ 139 (415)
.-.++|+|++|+|||||++.|.|-.
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CCEEEEECCCCchHHHHHHHHHcCC
Confidence 3389999999999999999998753
No 340
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=94.47 E-value=0.014 Score=50.33 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=20.5
Q ss_pred cEEEEEecCCCCHHHHHHHHhCC
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~ 138 (415)
..++++|++|+|||||++.+.+.
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999998764
No 341
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.46 E-value=0.024 Score=48.73 Aligned_cols=23 Identities=30% Similarity=0.524 Sum_probs=20.3
Q ss_pred CccEEEEEecCCCCHHHHHHHHh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMI 136 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~ 136 (415)
+...|+++|.+|+||||+.+.|.
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHH
Confidence 34579999999999999999986
No 342
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.44 E-value=0.024 Score=49.05 Aligned_cols=22 Identities=32% Similarity=0.602 Sum_probs=19.7
Q ss_pred cEEEEEecCCCCHHHHHHHHhC
Q 014942 116 GYVAVLGKPNVGKSTLANQMIG 137 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~ 137 (415)
..|+++|.+|+||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999853
No 343
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.42 E-value=0.023 Score=49.95 Aligned_cols=23 Identities=26% Similarity=0.250 Sum_probs=20.3
Q ss_pred ccEEEEEecCCCCHHHHHHHHhC
Q 014942 115 SGYVAVLGKPNVGKSTLANQMIG 137 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~~ 137 (415)
...|+|.|.+|+||||+.+.|..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 45799999999999999999864
No 344
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.40 E-value=0.019 Score=51.18 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=20.0
Q ss_pred cEEEEEecCCCCHHHHHHHHhC
Q 014942 116 GYVAVLGKPNVGKSTLANQMIG 137 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~ 137 (415)
..|+|+|++|+||||+++.|.+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999865
No 345
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.37 E-value=0.11 Score=51.71 Aligned_cols=22 Identities=23% Similarity=0.416 Sum_probs=20.0
Q ss_pred EEEEEecCCCCHHHHHHHHhCC
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQ 138 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~ 138 (415)
-|++.|+||+|||+|+.++.+.
T Consensus 245 GILLyGPPGTGKTlLAkAiA~e 266 (467)
T 4b4t_H 245 GILLYGPPGTGKTLCARAVANR 266 (467)
T ss_dssp EEEECSCTTSSHHHHHHHHHHH
T ss_pred ceEeeCCCCCcHHHHHHHHHhc
Confidence 6999999999999999999753
No 346
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.37 E-value=0.11 Score=51.27 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=20.4
Q ss_pred ccEEEEEecCCCCHHHHHHHHhC
Q 014942 115 SGYVAVLGKPNVGKSTLANQMIG 137 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~~ 137 (415)
...|+++|.||+||||+.++|..
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTG
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 44789999999999999999875
No 347
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.37 E-value=0.023 Score=49.85 Aligned_cols=22 Identities=27% Similarity=0.549 Sum_probs=19.8
Q ss_pred cEEEEEecCCCCHHHHHHHHhC
Q 014942 116 GYVAVLGKPNVGKSTLANQMIG 137 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~ 137 (415)
..|+|+|.+|+||||+++.|..
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999864
No 348
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.36 E-value=0.02 Score=50.29 Aligned_cols=21 Identities=29% Similarity=0.387 Sum_probs=19.8
Q ss_pred EEEEEecCCCCHHHHHHHHhC
Q 014942 117 YVAVLGKPNVGKSTLANQMIG 137 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~ 137 (415)
.|+|+|.+|+||||+++.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999999976
No 349
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=94.31 E-value=0.022 Score=51.46 Aligned_cols=22 Identities=36% Similarity=0.424 Sum_probs=20.0
Q ss_pred cEEEEEecCCCCHHHHHHHHhC
Q 014942 116 GYVAVLGKPNVGKSTLANQMIG 137 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~ 137 (415)
-.++|+|++|+|||||++.|++
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHH
Confidence 3799999999999999999873
No 350
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.31 E-value=0.023 Score=49.13 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=20.0
Q ss_pred ccEEEEEecCCCCHHHHHHHHhC
Q 014942 115 SGYVAVLGKPNVGKSTLANQMIG 137 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~~ 137 (415)
...|+|+|.+|+||||+...|..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999998853
No 351
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=94.30 E-value=0.022 Score=55.12 Aligned_cols=24 Identities=29% Similarity=0.508 Sum_probs=21.7
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCc
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~ 139 (415)
-.++|+|++|+|||||++.|.|-.
T Consensus 42 e~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 379999999999999999998854
No 352
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.30 E-value=0.024 Score=48.88 Aligned_cols=21 Identities=38% Similarity=0.449 Sum_probs=19.3
Q ss_pred EEEEEecCCCCHHHHHHHHhC
Q 014942 117 YVAVLGKPNVGKSTLANQMIG 137 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~ 137 (415)
.|+|.|.+||||||+.+.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999864
No 353
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.29 E-value=0.025 Score=49.65 Aligned_cols=22 Identities=23% Similarity=0.267 Sum_probs=19.9
Q ss_pred cEEEEEecCCCCHHHHHHHHhC
Q 014942 116 GYVAVLGKPNVGKSTLANQMIG 137 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~ 137 (415)
..|+|+|.+|+||||+...|..
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4799999999999999999864
No 354
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.27 E-value=0.11 Score=51.48 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=20.5
Q ss_pred cEEEEEecCCCCHHHHHHHHhCC
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~ 138 (415)
.-|++.|+||+|||+|+.++.+.
T Consensus 216 rGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 216 KGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred CeeEEECcCCCCHHHHHHHHHHH
Confidence 36999999999999999999764
No 355
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.25 E-value=0.03 Score=49.07 Aligned_cols=24 Identities=33% Similarity=0.427 Sum_probs=20.8
Q ss_pred CccEEEEEecCCCCHHHHHHHHhC
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~ 137 (415)
+...|+|+|.+|+||||+.+.|..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 445899999999999999999854
No 356
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.24 E-value=0.025 Score=53.51 Aligned_cols=24 Identities=29% Similarity=0.328 Sum_probs=21.2
Q ss_pred CccEEEEEecCCCCHHHHHHHHhC
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~ 137 (415)
+...|+|+|++|+|||||++.|.+
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 344899999999999999999876
No 357
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=94.23 E-value=0.023 Score=55.12 Aligned_cols=25 Identities=28% Similarity=0.282 Sum_probs=22.0
Q ss_pred ccEEEEEecCCCCHHHHHHHHhCCc
Q 014942 115 SGYVAVLGKPNVGKSTLANQMIGQK 139 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~~~~ 139 (415)
.-.++|+|++|+|||||++.|.|-.
T Consensus 54 Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 54 GQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEEcCCCchHHHHHHHHhcCC
Confidence 3479999999999999999998854
No 358
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=94.22 E-value=0.023 Score=55.05 Aligned_cols=24 Identities=33% Similarity=0.481 Sum_probs=21.6
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCc
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~ 139 (415)
-.++|+|++|+|||||++.|.|-.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEEcCCCchHHHHHHHHHCCC
Confidence 379999999999999999998853
No 359
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.20 E-value=0.027 Score=48.49 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=20.4
Q ss_pred ccEEEEEecCCCCHHHHHHHHhC
Q 014942 115 SGYVAVLGKPNVGKSTLANQMIG 137 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~~ 137 (415)
.+.++|+|.+|+|||||+++|+.
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999874
No 360
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=94.20 E-value=0.028 Score=49.51 Aligned_cols=24 Identities=33% Similarity=0.356 Sum_probs=20.9
Q ss_pred CccEEEEEecCCCCHHHHHHHHhC
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~ 137 (415)
+...|+|+|.+|+|||||++.|.+
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 344899999999999999999875
No 361
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.19 E-value=0.096 Score=45.65 Aligned_cols=21 Identities=24% Similarity=0.341 Sum_probs=19.1
Q ss_pred EEEEEecCCCCHHHHHHHHhC
Q 014942 117 YVAVLGKPNVGKSTLANQMIG 137 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~ 137 (415)
.+++.|++|+|||+|+..+..
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 499999999999999998864
No 362
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.18 E-value=0.025 Score=49.34 Aligned_cols=21 Identities=29% Similarity=0.529 Sum_probs=19.2
Q ss_pred EEEEEecCCCCHHHHHHHHhC
Q 014942 117 YVAVLGKPNVGKSTLANQMIG 137 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~ 137 (415)
.|+|.|.+||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999864
No 363
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=94.17 E-value=0.024 Score=54.98 Aligned_cols=24 Identities=38% Similarity=0.558 Sum_probs=21.7
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCc
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~ 139 (415)
-.++|+|++|+|||||++.|.|-.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCchHHHHHHHHhcCC
Confidence 379999999999999999998854
No 364
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=94.15 E-value=0.024 Score=55.27 Aligned_cols=24 Identities=33% Similarity=0.570 Sum_probs=21.7
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCc
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~ 139 (415)
-.++|+|++|+|||||++.|.|-.
T Consensus 30 e~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEEcCCCchHHHHHHHHHcCC
Confidence 379999999999999999998854
No 365
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.14 E-value=0.026 Score=49.60 Aligned_cols=21 Identities=33% Similarity=0.450 Sum_probs=19.8
Q ss_pred EEEEEecCCCCHHHHHHHHhC
Q 014942 117 YVAVLGKPNVGKSTLANQMIG 137 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~ 137 (415)
.|+|+|.+|+||||+.+.|.+
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999976
No 366
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=94.11 E-value=0.02 Score=55.49 Aligned_cols=24 Identities=38% Similarity=0.533 Sum_probs=21.8
Q ss_pred ccEEEEEecCCCCHHHHHHHHhCC
Q 014942 115 SGYVAVLGKPNVGKSTLANQMIGQ 138 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~~~ 138 (415)
..+++|+|++|+|||||++.|.|.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999874
No 367
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=94.11 E-value=0.025 Score=55.09 Aligned_cols=24 Identities=25% Similarity=0.504 Sum_probs=21.6
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCc
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~ 139 (415)
-.++|+|++|+|||||++.|.|-.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCcHHHHHHHHHHcCC
Confidence 379999999999999999998854
No 368
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.10 E-value=0.026 Score=48.61 Aligned_cols=22 Identities=36% Similarity=0.524 Sum_probs=19.7
Q ss_pred cEEEEEecCCCCHHHHHHHHhC
Q 014942 116 GYVAVLGKPNVGKSTLANQMIG 137 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~ 137 (415)
..|+++|.+|+||||+.+.|..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999863
No 369
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.10 E-value=0.13 Score=50.73 Aligned_cols=23 Identities=35% Similarity=0.499 Sum_probs=20.5
Q ss_pred cEEEEEecCCCCHHHHHHHHhCC
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~ 138 (415)
.-|++.|+||+|||+|+.++.+.
T Consensus 217 rGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 217 KGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp SEEEEESSTTTTHHHHHHHHHHH
T ss_pred CCCceECCCCchHHHHHHHHHHH
Confidence 36999999999999999999754
No 370
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=94.10 E-value=0.023 Score=54.38 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=21.0
Q ss_pred cEEEEEecCCCCHHHHHHHHhCC
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~ 138 (415)
..++|+|++|+|||||++.|.+.
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGG
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 37999999999999999999874
No 371
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.10 E-value=0.032 Score=48.32 Aligned_cols=24 Identities=29% Similarity=0.577 Sum_probs=20.6
Q ss_pred CccEEEEEecCCCCHHHHHHHHhC
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~ 137 (415)
+...|+|+|.+|+||||+.+.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999999863
No 372
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=94.08 E-value=0.025 Score=54.89 Aligned_cols=23 Identities=26% Similarity=0.498 Sum_probs=21.2
Q ss_pred cEEEEEecCCCCHHHHHHHHhCC
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~ 138 (415)
..++|+|++|+|||||++.|.+.
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 37999999999999999999875
No 373
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=94.07 E-value=0.026 Score=54.98 Aligned_cols=24 Identities=25% Similarity=0.519 Sum_probs=21.6
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCc
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~ 139 (415)
-.++|+|++|+|||||++.|.|-.
T Consensus 38 e~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCChHHHHHHHHHcCC
Confidence 379999999999999999998853
No 374
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.07 E-value=0.14 Score=49.11 Aligned_cols=24 Identities=17% Similarity=0.346 Sum_probs=20.7
Q ss_pred ccEEEEEecCCCCHHHHHHHHhCC
Q 014942 115 SGYVAVLGKPNVGKSTLANQMIGQ 138 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~~~ 138 (415)
...+.|.|++|+|||||++.+...
T Consensus 44 ~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 347999999999999999998753
No 375
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=93.99 E-value=0.028 Score=50.59 Aligned_cols=25 Identities=24% Similarity=0.205 Sum_probs=21.9
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCC
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQ 138 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~ 138 (415)
+...|+|.|..|+|||||++.|.+.
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 4448999999999999999999874
No 376
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=93.99 E-value=0.02 Score=48.06 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=20.7
Q ss_pred cEEEEEecCCCCHHHHHHHHhCC
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~ 138 (415)
..++++|++|+|||||++.+.+.
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999864
No 377
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=93.97 E-value=0.031 Score=48.82 Aligned_cols=24 Identities=17% Similarity=0.288 Sum_probs=21.0
Q ss_pred ccEEEEEecCCCCHHHHHHHHhCC
Q 014942 115 SGYVAVLGKPNVGKSTLANQMIGQ 138 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~~~ 138 (415)
...|+|.|.+|+||||+.+.|...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 347999999999999999999753
No 378
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=93.95 E-value=0.039 Score=51.45 Aligned_cols=33 Identities=33% Similarity=0.334 Sum_probs=23.5
Q ss_pred eeEEEEeCCCCchhhhhhHhHHHHHHHHhhhcccceEEEEecCC
Q 014942 163 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDAC 206 (415)
Q Consensus 163 ~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~ 206 (415)
+.++++|||+.... .+...+..+|.+|+++...
T Consensus 104 yD~viiD~p~~~~~-----------~~~~~l~~aD~viiv~~~~ 136 (286)
T 2xj4_A 104 CDFILIDTPGGDSA-----------ITRMAHGRADLVVTPMNDS 136 (286)
T ss_dssp CSEEEEECCSSCCH-----------HHHHHHHTCSEEEEEEESS
T ss_pred CCEEEEcCCCCccH-----------HHHHHHHHCCEEEEEEcCC
Confidence 57899999985321 1234467899999999864
No 379
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=93.94 E-value=0.038 Score=47.73 Aligned_cols=24 Identities=33% Similarity=0.458 Sum_probs=20.8
Q ss_pred CccEEEEEecCCCCHHHHHHHHhC
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~ 137 (415)
+...|+++|.+|+||||+++.|..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 445799999999999999999864
No 380
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.94 E-value=0.035 Score=48.41 Aligned_cols=25 Identities=24% Similarity=0.272 Sum_probs=21.8
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCC
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQ 138 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~ 138 (415)
+...|+|+|.+|+||||+.+.|...
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 4458999999999999999999754
No 381
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=93.94 E-value=0.036 Score=48.80 Aligned_cols=24 Identities=21% Similarity=0.436 Sum_probs=20.8
Q ss_pred CccEEEEEecCCCCHHHHHHHHhC
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~ 137 (415)
+...|+|.|.+|+||||+.+.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999864
No 382
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=93.93 E-value=0.03 Score=54.85 Aligned_cols=24 Identities=33% Similarity=0.465 Sum_probs=21.7
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCc
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~ 139 (415)
-.++|+|++|+|||||++.|.|-.
T Consensus 48 e~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 48 QRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTCS
T ss_pred CEEEEECCCCChHHHHHHHHhCCC
Confidence 389999999999999999998853
No 383
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.91 E-value=0.03 Score=53.40 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=20.7
Q ss_pred CccEEEEEecCCCCHHHHHHHHhC
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~ 137 (415)
+...|+|+|++|||||||++.|.+
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 445799999999999999998864
No 384
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=93.88 E-value=0.026 Score=54.95 Aligned_cols=25 Identities=40% Similarity=0.493 Sum_probs=21.7
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCC
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQ 138 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~ 138 (415)
....|+|+|++|+|||||++.|++.
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3447999999999999999999863
No 385
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.88 E-value=0.042 Score=48.09 Aligned_cols=24 Identities=29% Similarity=0.562 Sum_probs=20.5
Q ss_pred CccEEEEEecCCCCHHHHHHHHhC
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~ 137 (415)
+...|+|.|.+|+||||+.+.|..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 344799999999999999999863
No 386
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.88 E-value=0.033 Score=47.97 Aligned_cols=21 Identities=19% Similarity=0.419 Sum_probs=19.3
Q ss_pred cEEEEEecCCCCHHHHHHHHh
Q 014942 116 GYVAVLGKPNVGKSTLANQMI 136 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~ 136 (415)
..|+++|.+|+||||+...|.
T Consensus 6 ~~i~l~G~~GsGKst~a~~La 26 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLA 26 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999985
No 387
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=93.87 E-value=0.031 Score=52.49 Aligned_cols=24 Identities=21% Similarity=0.196 Sum_probs=21.0
Q ss_pred CccEEEEEecCCCCHHHHHHHHhC
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~ 137 (415)
+...|+|+|++|+|||||++.|.+
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 445899999999999999998864
No 388
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=93.84 E-value=0.11 Score=48.85 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=19.9
Q ss_pred cEEEEEecCCCCHHHHHHHHhC
Q 014942 116 GYVAVLGKPNVGKSTLANQMIG 137 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~ 137 (415)
..|++.|+||+|||+|+.++.+
T Consensus 50 ~~vLL~Gp~GtGKT~la~ala~ 71 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLAKAIAN 71 (301)
T ss_dssp SEEEEECSSSSSHHHHHHHHHH
T ss_pred ceEEEECCCCcCHHHHHHHHHH
Confidence 3699999999999999999975
No 389
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=93.83 E-value=0.035 Score=49.75 Aligned_cols=22 Identities=23% Similarity=0.469 Sum_probs=19.9
Q ss_pred ccEEEEEecCCCCHHHHHHHHh
Q 014942 115 SGYVAVLGKPNVGKSTLANQMI 136 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~ 136 (415)
...|+|+|.+||||||+.+.|.
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999986
No 390
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=93.82 E-value=0.036 Score=47.59 Aligned_cols=23 Identities=26% Similarity=0.605 Sum_probs=20.1
Q ss_pred ccEEEEEecCCCCHHHHHHHHhC
Q 014942 115 SGYVAVLGKPNVGKSTLANQMIG 137 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~~ 137 (415)
.+..+|+|+.|+|||||+.+|..
T Consensus 26 ~g~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 26 KGFTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp SSEEEEEECTTSSHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHH
Confidence 34789999999999999999853
No 391
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=93.75 E-value=0.033 Score=49.32 Aligned_cols=21 Identities=38% Similarity=0.664 Sum_probs=19.0
Q ss_pred EEEEEecCCCCHHHHHHHHhC
Q 014942 117 YVAVLGKPNVGKSTLANQMIG 137 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~ 137 (415)
+|+|+|.+|+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999853
No 392
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=93.74 E-value=0.029 Score=55.54 Aligned_cols=25 Identities=28% Similarity=0.335 Sum_probs=21.9
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCC
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQ 138 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~ 138 (415)
+...++|+|++|+|||||++.|++.
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhh
Confidence 4457999999999999999999863
No 393
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=93.73 E-value=0.039 Score=50.50 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=20.3
Q ss_pred ccEEEEEecCCCCHHHHHHHHh
Q 014942 115 SGYVAVLGKPNVGKSTLANQMI 136 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~ 136 (415)
...|+|+|++|+||||+++.|.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3489999999999999999998
No 394
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=93.72 E-value=0.022 Score=54.91 Aligned_cols=24 Identities=25% Similarity=0.519 Sum_probs=21.7
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCc
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~ 139 (415)
-.++|+|++|+|||||++.|.|-.
T Consensus 27 e~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CEEEEECCCCccHHHHHHHHHcCC
Confidence 379999999999999999999854
No 395
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.71 E-value=0.025 Score=48.51 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=15.8
Q ss_pred CccEEEEEecCCCCHHHHHHHHh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMI 136 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~ 136 (415)
+...|+|.|.+|+||||+.+.|.
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La 26 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLH 26 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34579999999999999999985
No 396
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=93.67 E-value=0.026 Score=52.50 Aligned_cols=21 Identities=33% Similarity=0.583 Sum_probs=19.6
Q ss_pred EEEEecCCCCHHHHHHHHhCC
Q 014942 118 VAVLGKPNVGKSTLANQMIGQ 138 (415)
Q Consensus 118 V~ivG~~~vGKSSLln~l~~~ 138 (415)
++++|++|+|||||++++.+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999999763
No 397
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=93.66 E-value=0.038 Score=49.20 Aligned_cols=23 Identities=30% Similarity=0.432 Sum_probs=20.2
Q ss_pred ccEEEEEecCCCCHHHHHHHHhC
Q 014942 115 SGYVAVLGKPNVGKSTLANQMIG 137 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~~ 137 (415)
...|+|+|.+|+||||+.+.|..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999854
No 398
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=93.58 E-value=0.036 Score=49.06 Aligned_cols=21 Identities=24% Similarity=0.580 Sum_probs=19.0
Q ss_pred EEEEEecCCCCHHHHHHHHhC
Q 014942 117 YVAVLGKPNVGKSTLANQMIG 137 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~ 137 (415)
+|+|+|.||+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999853
No 399
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.57 E-value=0.04 Score=51.58 Aligned_cols=24 Identities=21% Similarity=0.393 Sum_probs=20.6
Q ss_pred CccEEEEEecCCCCHHHHHHHHhC
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~ 137 (415)
+...|+++|+|||||||+..+|..
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 344789999999999999999964
No 400
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=93.54 E-value=0.039 Score=49.18 Aligned_cols=22 Identities=27% Similarity=0.303 Sum_probs=19.8
Q ss_pred cEEEEEecCCCCHHHHHHHHhC
Q 014942 116 GYVAVLGKPNVGKSTLANQMIG 137 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~ 137 (415)
..|+|+|.+|+||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999863
No 401
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.48 E-value=0.053 Score=46.63 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=19.6
Q ss_pred cEEEEEecCCCCHHHHHHHHhC
Q 014942 116 GYVAVLGKPNVGKSTLANQMIG 137 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~ 137 (415)
..|+|.|.+|+||||+.+.|..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999854
No 402
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=93.47 E-value=0.031 Score=50.97 Aligned_cols=21 Identities=43% Similarity=0.790 Sum_probs=19.5
Q ss_pred EEEEecCCCCHHHHHHHHhCC
Q 014942 118 VAVLGKPNVGKSTLANQMIGQ 138 (415)
Q Consensus 118 V~ivG~~~vGKSSLln~l~~~ 138 (415)
++++|++|+|||||++.+.+.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 999999999999999999763
No 403
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=93.47 E-value=0.25 Score=46.83 Aligned_cols=22 Identities=32% Similarity=0.478 Sum_probs=20.0
Q ss_pred cEEEEEecCCCCHHHHHHHHhC
Q 014942 116 GYVAVLGKPNVGKSTLANQMIG 137 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~ 137 (415)
..|++.|+||+|||+|+.++..
T Consensus 46 ~~iLL~GppGtGKT~la~ala~ 67 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVAT 67 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHH
Confidence 4799999999999999999875
No 404
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.47 E-value=0.04 Score=47.85 Aligned_cols=22 Identities=23% Similarity=0.554 Sum_probs=19.8
Q ss_pred cEEEEEecCCCCHHHHHHHHhC
Q 014942 116 GYVAVLGKPNVGKSTLANQMIG 137 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~ 137 (415)
..|+|+|.+|+||||+.+.|..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999864
No 405
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=93.45 E-value=0.036 Score=56.33 Aligned_cols=22 Identities=27% Similarity=0.350 Sum_probs=20.3
Q ss_pred EEEEEecCCCCHHHHHHHHhCC
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQ 138 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~ 138 (415)
.++|+|++|+|||||+++|++.
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGG
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5999999999999999999873
No 406
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=93.39 E-value=0.022 Score=55.11 Aligned_cols=24 Identities=25% Similarity=0.455 Sum_probs=21.7
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCc
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~ 139 (415)
-.++|+|++|+|||||++.|.|-.
T Consensus 32 e~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 379999999999999999999854
No 407
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=93.36 E-value=0.045 Score=46.90 Aligned_cols=23 Identities=22% Similarity=0.231 Sum_probs=20.3
Q ss_pred ccEEEEEecCCCCHHHHHHHHhC
Q 014942 115 SGYVAVLGKPNVGKSTLANQMIG 137 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~~ 137 (415)
...|+++|.+|+||||+++.|.+
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 44799999999999999999865
No 408
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=93.36 E-value=0.38 Score=44.54 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=20.1
Q ss_pred cEEEEEecCCCCHHHHHHHHhC
Q 014942 116 GYVAVLGKPNVGKSTLANQMIG 137 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~ 137 (415)
..|++.|+||+|||+|+.++.+
T Consensus 55 ~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 55 KGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp SEEEEESSSSSCHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHH
Confidence 4799999999999999999975
No 409
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.33 E-value=0.024 Score=49.94 Aligned_cols=21 Identities=33% Similarity=0.583 Sum_probs=19.2
Q ss_pred EEEEEecCCCCHHHHHHHHhC
Q 014942 117 YVAVLGKPNVGKSTLANQMIG 137 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~ 137 (415)
.|+|.|.+|+||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999864
No 410
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=93.27 E-value=0.043 Score=48.80 Aligned_cols=23 Identities=22% Similarity=0.368 Sum_probs=20.1
Q ss_pred ccEEEEEecCCCCHHHHHHHHhC
Q 014942 115 SGYVAVLGKPNVGKSTLANQMIG 137 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~~ 137 (415)
...|+|+|.+|+||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999853
No 411
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=93.26 E-value=0.16 Score=49.28 Aligned_cols=22 Identities=36% Similarity=0.471 Sum_probs=19.5
Q ss_pred ccEEEEEecCCCCHHHHHHHHh
Q 014942 115 SGYVAVLGKPNVGKSTLANQMI 136 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~ 136 (415)
.+..+|+|+.|+|||||+++++
T Consensus 23 ~g~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 23 SGITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 3468899999999999999986
No 412
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=93.22 E-value=0.046 Score=50.22 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=20.2
Q ss_pred ccEEEEEecCCCCHHHHHHHHhC
Q 014942 115 SGYVAVLGKPNVGKSTLANQMIG 137 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~~ 137 (415)
...|+++|.||+||||+.+.|..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 34799999999999999999864
No 413
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=93.21 E-value=0.048 Score=49.59 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=20.9
Q ss_pred CccEEEEEecCCCCHHHHHHHHhC
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~ 137 (415)
+...|+|+|.||+||||+...|..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999999963
No 414
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.21 E-value=0.042 Score=47.28 Aligned_cols=21 Identities=29% Similarity=0.536 Sum_probs=18.9
Q ss_pred EEEEEecCCCCHHHHHHHHhC
Q 014942 117 YVAVLGKPNVGKSTLANQMIG 137 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~ 137 (415)
.|+|+|.+|+||||+...|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998853
No 415
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=93.17 E-value=0.16 Score=48.02 Aligned_cols=22 Identities=32% Similarity=0.469 Sum_probs=19.9
Q ss_pred cEEEEEecCCCCHHHHHHHHhC
Q 014942 116 GYVAVLGKPNVGKSTLANQMIG 137 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~ 137 (415)
..|++.|+||+|||+|+.++..
T Consensus 52 ~~vLl~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 4799999999999999999965
No 416
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.16 E-value=0.042 Score=46.92 Aligned_cols=21 Identities=33% Similarity=0.428 Sum_probs=19.1
Q ss_pred EEEEEecCCCCHHHHHHHHhC
Q 014942 117 YVAVLGKPNVGKSTLANQMIG 137 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~ 137 (415)
.|+|+|.+|+||||+...|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999999853
No 417
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=93.14 E-value=0.038 Score=49.11 Aligned_cols=23 Identities=26% Similarity=0.599 Sum_probs=20.4
Q ss_pred cEEEEEecCCCCHHHHHHHHhCC
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~ 138 (415)
-.++|+|++|+|||||+..|.+.
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 37899999999999999999853
No 418
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=93.09 E-value=0.053 Score=48.02 Aligned_cols=21 Identities=33% Similarity=0.537 Sum_probs=19.1
Q ss_pred EEEEEecCCCCHHHHHHHHhC
Q 014942 117 YVAVLGKPNVGKSTLANQMIG 137 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~ 137 (415)
+|+|.|.+|+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999854
No 419
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.07 E-value=0.05 Score=45.88 Aligned_cols=21 Identities=24% Similarity=0.286 Sum_probs=19.1
Q ss_pred EEEEEecCCCCHHHHHHHHhC
Q 014942 117 YVAVLGKPNVGKSTLANQMIG 137 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~ 137 (415)
.|+|.|.+|+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999854
No 420
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=93.04 E-value=0.065 Score=48.05 Aligned_cols=24 Identities=33% Similarity=0.580 Sum_probs=19.6
Q ss_pred CccEEEEEecCCCCHHHHHHHHhC
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~ 137 (415)
+...|.|+|+|||||+|....|..
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 334577899999999999998864
No 421
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=93.01 E-value=0.042 Score=51.36 Aligned_cols=23 Identities=30% Similarity=0.297 Sum_probs=20.6
Q ss_pred cEEEEEecCCCCHHHHHHHHhCC
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~ 138 (415)
-.++|+|++|+|||||++.|.+.
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 37999999999999999998764
No 422
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=92.98 E-value=0.052 Score=46.99 Aligned_cols=21 Identities=24% Similarity=0.343 Sum_probs=19.1
Q ss_pred EEEEEecCCCCHHHHHHHHhC
Q 014942 117 YVAVLGKPNVGKSTLANQMIG 137 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~ 137 (415)
.|+|.|.+||||||+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999864
No 423
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=92.95 E-value=0.053 Score=46.75 Aligned_cols=21 Identities=29% Similarity=0.385 Sum_probs=19.1
Q ss_pred EEEEEecCCCCHHHHHHHHhC
Q 014942 117 YVAVLGKPNVGKSTLANQMIG 137 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~ 137 (415)
.|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999864
No 424
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=92.93 E-value=0.044 Score=54.92 Aligned_cols=25 Identities=20% Similarity=0.425 Sum_probs=21.9
Q ss_pred CccEEEEEecCCCCHHHHHHHHhCC
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIGQ 138 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~~ 138 (415)
+...++|+|+.|+|||||++.|.|.
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCc
Confidence 3458999999999999999999864
No 425
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=92.92 E-value=0.056 Score=47.96 Aligned_cols=22 Identities=41% Similarity=0.412 Sum_probs=20.0
Q ss_pred cEEEEEecCCCCHHHHHHHHhC
Q 014942 116 GYVAVLGKPNVGKSTLANQMIG 137 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~ 137 (415)
..|+|.|.+|+||||+.+.|..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999964
No 426
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=92.88 E-value=0.072 Score=49.63 Aligned_cols=23 Identities=22% Similarity=0.283 Sum_probs=20.6
Q ss_pred CccEEEEEecCCCCHHHHHHHHh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMI 136 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~ 136 (415)
+...|+|.|.+||||||+.+.|.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 44589999999999999999996
No 427
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=92.87 E-value=0.3 Score=47.47 Aligned_cols=22 Identities=27% Similarity=0.459 Sum_probs=19.9
Q ss_pred cEEEEEecCCCCHHHHHHHHhC
Q 014942 116 GYVAVLGKPNVGKSTLANQMIG 137 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~ 137 (415)
..|+|.|++|+|||+|+.++..
T Consensus 149 ~~vLL~GppGtGKT~la~aia~ 170 (389)
T 3vfd_A 149 RGLLLFGPPGNGKTMLAKAVAA 170 (389)
T ss_dssp SEEEEESSTTSCHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999854
No 428
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=92.83 E-value=0.043 Score=50.80 Aligned_cols=21 Identities=43% Similarity=0.790 Sum_probs=19.5
Q ss_pred EEEEecCCCCHHHHHHHHhCC
Q 014942 118 VAVLGKPNVGKSTLANQMIGQ 138 (415)
Q Consensus 118 V~ivG~~~vGKSSLln~l~~~ 138 (415)
|+|+|++|+|||||++.+.+.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 999999999999999999763
No 429
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=92.77 E-value=0.046 Score=49.97 Aligned_cols=24 Identities=17% Similarity=0.187 Sum_probs=20.7
Q ss_pred CccEEEEEecCCCCHHHHHHHHhC
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~ 137 (415)
+...|+++|.||+||||+...|..
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999864
No 430
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=92.76 E-value=0.043 Score=52.46 Aligned_cols=23 Identities=35% Similarity=0.577 Sum_probs=20.4
Q ss_pred cEEEEEecCCCCHHHHHHHHhCC
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~ 138 (415)
..++++|++|+|||||++.+.+.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 36999999999999999999764
No 431
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.71 E-value=0.29 Score=49.58 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=19.9
Q ss_pred cEEEEEecCCCCHHHHHHHHhC
Q 014942 116 GYVAVLGKPNVGKSTLANQMIG 137 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~ 137 (415)
..++|.|+||+|||+++.++..
T Consensus 78 ~~lLL~GppGtGKTtla~~la~ 99 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVAQ 99 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999864
No 432
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=92.68 E-value=0.12 Score=52.06 Aligned_cols=22 Identities=23% Similarity=0.443 Sum_probs=19.7
Q ss_pred cEEEEEecCCCCHHHHHHHHhC
Q 014942 116 GYVAVLGKPNVGKSTLANQMIG 137 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~ 137 (415)
..|+|.|+||+|||+|+.++..
T Consensus 239 ~~vLL~GppGtGKT~lAraia~ 260 (489)
T 3hu3_A 239 RGILLYGPPGTGKTLIARAVAN 260 (489)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEECcCCCCHHHHHHHHHH
Confidence 3699999999999999999864
No 433
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=92.67 E-value=0.07 Score=54.56 Aligned_cols=23 Identities=39% Similarity=0.626 Sum_probs=21.2
Q ss_pred EEEEEecCCCCHHHHHHHHhCCc
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQK 139 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~~ 139 (415)
.++|+|+.|+|||||++.|.|.-
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 79999999999999999999853
No 434
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=92.67 E-value=0.055 Score=45.82 Aligned_cols=21 Identities=14% Similarity=0.339 Sum_probs=19.0
Q ss_pred EEEEEecCCCCHHHHHHHHhC
Q 014942 117 YVAVLGKPNVGKSTLANQMIG 137 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~ 137 (415)
.|+|.|.+|+||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998853
No 435
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=92.61 E-value=0.07 Score=47.97 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=20.3
Q ss_pred ccEEEEEecCCCCHHHHHHHHhC
Q 014942 115 SGYVAVLGKPNVGKSTLANQMIG 137 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~~ 137 (415)
...|+|+|.+|+||||+.+.|..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999864
No 436
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=92.60 E-value=0.067 Score=44.80 Aligned_cols=22 Identities=27% Similarity=0.588 Sum_probs=19.6
Q ss_pred ccEEEEEecCCCCHHHHHHHHh
Q 014942 115 SGYVAVLGKPNVGKSTLANQMI 136 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~ 136 (415)
.+..+|+|+.|+||||++.+|.
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 4578999999999999999985
No 437
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=92.54 E-value=0.068 Score=47.48 Aligned_cols=21 Identities=33% Similarity=0.574 Sum_probs=19.1
Q ss_pred EEEEEecCCCCHHHHHHHHhC
Q 014942 117 YVAVLGKPNVGKSTLANQMIG 137 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~ 137 (415)
.|+++|+|||||+|....|..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999874
No 438
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=92.53 E-value=0.061 Score=51.82 Aligned_cols=27 Identities=22% Similarity=0.292 Sum_probs=23.1
Q ss_pred CCccEEEEEecCCCCHHHHHHHHhCCc
Q 014942 113 HKSGYVAVLGKPNVGKSTLANQMIGQK 139 (415)
Q Consensus 113 ~~~~~V~ivG~~~vGKSSLln~l~~~~ 139 (415)
.+.-+++|+|++|+|||||++.|.+..
T Consensus 69 ~~Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 69 GIGQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345589999999999999999998753
No 439
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=92.52 E-value=0.06 Score=49.33 Aligned_cols=21 Identities=24% Similarity=0.324 Sum_probs=19.0
Q ss_pred EEEEEecCCCCHHHHHHHHhC
Q 014942 117 YVAVLGKPNVGKSTLANQMIG 137 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~ 137 (415)
.|+|+|++|+|||||...|..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999999864
No 440
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=92.50 E-value=0.15 Score=45.76 Aligned_cols=23 Identities=13% Similarity=-0.005 Sum_probs=18.1
Q ss_pred CccEEEEEecCCCCHHHHHHHHh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMI 136 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~ 136 (415)
+...+++.|++|+||||++-.+.
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~ 33 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRL 33 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHH
T ss_pred CcEEEEEECCCCCcHHHHHHHHH
Confidence 34478888999999999876654
No 441
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=92.46 E-value=0.056 Score=45.94 Aligned_cols=24 Identities=25% Similarity=0.480 Sum_probs=20.4
Q ss_pred ccEEEEEecCCCCHHHHHHHHhCC
Q 014942 115 SGYVAVLGKPNVGKSTLANQMIGQ 138 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~~~ 138 (415)
...++|.|++|+|||+|+..+...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 347899999999999999988643
No 442
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=92.46 E-value=0.074 Score=47.31 Aligned_cols=23 Identities=13% Similarity=0.222 Sum_probs=20.5
Q ss_pred ccEEEEEecCCCCHHHHHHHHhC
Q 014942 115 SGYVAVLGKPNVGKSTLANQMIG 137 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~~ 137 (415)
...++|.|++|+|||+|+..+..
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999865
No 443
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=92.44 E-value=0.067 Score=47.14 Aligned_cols=22 Identities=36% Similarity=0.182 Sum_probs=20.4
Q ss_pred cEEEEEecCCCCHHHHHHHHhC
Q 014942 116 GYVAVLGKPNVGKSTLANQMIG 137 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~ 137 (415)
..++|+|++|+|||||+..|.+
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999987
No 444
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=92.42 E-value=0.075 Score=46.95 Aligned_cols=23 Identities=30% Similarity=0.245 Sum_probs=20.2
Q ss_pred ccEEEEEecCCCCHHHHHHHHhC
Q 014942 115 SGYVAVLGKPNVGKSTLANQMIG 137 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~~ 137 (415)
...|+++|.+|+||||+++.|.+
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999999864
No 445
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=92.39 E-value=0.32 Score=45.77 Aligned_cols=21 Identities=24% Similarity=0.358 Sum_probs=17.0
Q ss_pred EEEEEecCCCCHHHHHHHHhC
Q 014942 117 YVAVLGKPNVGKSTLANQMIG 137 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~ 137 (415)
.+.+.|+||+|||+++.++..
T Consensus 50 ~~L~~G~~G~GKT~la~~la~ 70 (324)
T 3u61_B 50 IILHSPSPGTGKTTVAKALCH 70 (324)
T ss_dssp EEEECSSTTSSHHHHHHHHHH
T ss_pred EEEeeCcCCCCHHHHHHHHHH
Confidence 455566799999999999864
No 446
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=92.36 E-value=0.07 Score=47.70 Aligned_cols=21 Identities=24% Similarity=0.374 Sum_probs=19.0
Q ss_pred EEEEEecCCCCHHHHHHHHhC
Q 014942 117 YVAVLGKPNVGKSTLANQMIG 137 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~ 137 (415)
.|+|.|.+|+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999853
No 447
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=92.35 E-value=0.066 Score=54.80 Aligned_cols=24 Identities=33% Similarity=0.434 Sum_probs=21.7
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCc
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~ 139 (415)
-.++|+|+.|+|||||++.|.|..
T Consensus 48 e~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 48 MVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 389999999999999999999853
No 448
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=92.32 E-value=0.07 Score=55.12 Aligned_cols=24 Identities=33% Similarity=0.428 Sum_probs=21.7
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCc
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~ 139 (415)
-.++++|++|+|||||++.|.|-.
T Consensus 370 ~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 370 KTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp CEEEEEECTTSSHHHHHHHHTTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhhcc
Confidence 389999999999999999998853
No 449
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=92.32 E-value=0.088 Score=47.46 Aligned_cols=24 Identities=25% Similarity=0.447 Sum_probs=20.9
Q ss_pred CccEEEEEecCCCCHHHHHHHHhC
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~ 137 (415)
+...|+|.|.+|+||||+++.|..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 445799999999999999999864
No 450
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=92.26 E-value=0.076 Score=48.42 Aligned_cols=24 Identities=21% Similarity=0.379 Sum_probs=20.6
Q ss_pred CccEEEEEecCCCCHHHHHHHHhC
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~ 137 (415)
+...|+|.|.+|+||||+.+.|..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999998854
No 451
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=92.20 E-value=0.18 Score=47.17 Aligned_cols=23 Identities=30% Similarity=0.401 Sum_probs=20.0
Q ss_pred cEEEEEecCCCCHHHHHHHHhCC
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~ 138 (415)
+.+++.|++|+|||+++..+...
T Consensus 47 ~~~ll~G~~G~GKT~la~~l~~~ 69 (327)
T 1iqp_A 47 PHLLFAGPPGVGKTTAALALARE 69 (327)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 35999999999999999998753
No 452
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=92.18 E-value=0.079 Score=48.02 Aligned_cols=23 Identities=35% Similarity=0.367 Sum_probs=20.0
Q ss_pred CccEEEEEecCCCCHHHHHHHHh
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMI 136 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~ 136 (415)
+...|+|.|++|+||||+.+.|.
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34589999999999999999986
No 453
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=92.15 E-value=0.061 Score=54.10 Aligned_cols=22 Identities=23% Similarity=0.225 Sum_probs=20.2
Q ss_pred cEEEEEecCCCCHHHHHHHHhC
Q 014942 116 GYVAVLGKPNVGKSTLANQMIG 137 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~ 137 (415)
-.++|+|++|+|||||++.|.|
T Consensus 30 e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhc
Confidence 5899999999999999999875
No 454
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=92.12 E-value=0.066 Score=47.97 Aligned_cols=23 Identities=13% Similarity=0.322 Sum_probs=20.7
Q ss_pred cEEEEEecCCCCHHHHHHHHhCC
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~ 138 (415)
-.++|+|++|+|||||+..|.+.
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 37999999999999999999863
No 455
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=92.11 E-value=0.22 Score=53.25 Aligned_cols=23 Identities=22% Similarity=0.449 Sum_probs=20.7
Q ss_pred cEEEEEecCCCCHHHHHHHHhCC
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~ 138 (415)
.-|++.|+||+|||+|+.++.+.
T Consensus 239 ~GILL~GPPGTGKT~LAraiA~e 261 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp CEEEEECCTTSCHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999999864
No 456
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=92.01 E-value=0.077 Score=48.65 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=20.3
Q ss_pred ccEEEEEecCCCCHHHHHHHHhC
Q 014942 115 SGYVAVLGKPNVGKSTLANQMIG 137 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~~ 137 (415)
...|+|+|.+|+||||+.+.|.+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999999854
No 457
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=92.00 E-value=0.089 Score=45.90 Aligned_cols=22 Identities=23% Similarity=0.228 Sum_probs=19.9
Q ss_pred cEEEEEecCCCCHHHHHHHHhC
Q 014942 116 GYVAVLGKPNVGKSTLANQMIG 137 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~ 137 (415)
..+++.|++|+|||+|+.++..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999875
No 458
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=91.93 E-value=0.074 Score=48.43 Aligned_cols=21 Identities=38% Similarity=0.650 Sum_probs=19.5
Q ss_pred EEEEEecCCCCHHHHHHHHhC
Q 014942 117 YVAVLGKPNVGKSTLANQMIG 137 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~ 137 (415)
.|+++|+||+|||||+.++.+
T Consensus 47 ~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHH
Confidence 599999999999999999975
No 459
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=91.86 E-value=0.085 Score=52.50 Aligned_cols=28 Identities=21% Similarity=0.255 Sum_probs=23.5
Q ss_pred CCCCccEEEEEecCCCCHHHHHHHHhCC
Q 014942 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQ 138 (415)
Q Consensus 111 ~~~~~~~V~ivG~~~vGKSSLln~l~~~ 138 (415)
+-.+.-+++|+|++|+|||||++.|.+.
T Consensus 153 ~i~~Gq~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 153 TVGRGQRMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp CCBTTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3335558999999999999999999875
No 460
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=91.81 E-value=0.089 Score=44.43 Aligned_cols=22 Identities=27% Similarity=0.301 Sum_probs=19.5
Q ss_pred cEEEEEecCCCCHHHHHHHHhC
Q 014942 116 GYVAVLGKPNVGKSTLANQMIG 137 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~ 137 (415)
..|+|.|.+|+||||+...|..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998853
No 461
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=91.80 E-value=0.077 Score=54.81 Aligned_cols=24 Identities=38% Similarity=0.455 Sum_probs=21.7
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCc
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~ 139 (415)
-.++++|++|+|||||++.|.|-.
T Consensus 370 ~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 370 KTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 389999999999999999998853
No 462
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=91.80 E-value=0.083 Score=54.84 Aligned_cols=24 Identities=25% Similarity=0.497 Sum_probs=21.7
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCc
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~ 139 (415)
-.++|+|+.|+|||||++.|.|..
T Consensus 104 ei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 104 QVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCChHHHHHHHHhcCC
Confidence 389999999999999999998854
No 463
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=91.79 E-value=0.082 Score=51.51 Aligned_cols=23 Identities=30% Similarity=0.439 Sum_probs=20.6
Q ss_pred ccEEEEEecCCCCHHHHHHHHhC
Q 014942 115 SGYVAVLGKPNVGKSTLANQMIG 137 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~~ 137 (415)
...++++|++|+|||||++.|.+
T Consensus 169 ~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 34899999999999999999985
No 464
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=91.65 E-value=0.13 Score=45.39 Aligned_cols=26 Identities=27% Similarity=0.281 Sum_probs=21.9
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCcee
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQKLS 141 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~~~ 141 (415)
..|+|+|++|+|||||...|...-..
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g~~ 60 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRGHR 60 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTTCE
T ss_pred EEEEEECCCCCCHHHHHHHHHHhCCe
Confidence 36999999999999999999865433
No 465
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=91.65 E-value=0.071 Score=55.25 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=22.1
Q ss_pred ccEEEEEecCCCCHHHHHHHHhCCc
Q 014942 115 SGYVAVLGKPNVGKSTLANQMIGQK 139 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~~~~ 139 (415)
.-.++++|++|+|||||++.|.|-.
T Consensus 370 G~~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 370 GSVTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp TCEEEEECCTTSSSTHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCc
Confidence 3489999999999999999998853
No 466
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=91.58 E-value=0.076 Score=55.06 Aligned_cols=25 Identities=28% Similarity=0.411 Sum_probs=22.1
Q ss_pred ccEEEEEecCCCCHHHHHHHHhCCc
Q 014942 115 SGYVAVLGKPNVGKSTLANQMIGQK 139 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~~~~ 139 (415)
.-.++++|++|+|||||++.|.|-.
T Consensus 381 G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 381 GQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp TCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCc
Confidence 3489999999999999999998853
No 467
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=91.50 E-value=6.5 Score=37.36 Aligned_cols=86 Identities=13% Similarity=0.100 Sum_probs=45.6
Q ss_pred cceEEEEecCCCCCchHHHHHHHHhcccCCCCCE-EEEEeCCCCCCh-hH--------HHHHHHHHhhcCCCc--cEEEc
Q 014942 196 ADCIVVLVDACKAPERIDEILEEGVGDHKDKLPI-LLVLNKKDLIKP-GE--------IAKKLEWYEKFTDVD--EVIPV 263 (415)
Q Consensus 196 aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~pi-ilV~NK~Dl~~~-~~--------~~~~~~~~~~~~~~~--~i~~v 263 (415)
.+.+++|.-...............++. .+.|+ -+|+|++..... .. -....+.+.+..+.. -.+|.
T Consensus 237 ~~~~vlV~~p~~~~~~e~~r~~~~l~~--~~i~v~gvV~N~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~l~~iPl 314 (349)
T 3ug7_A 237 RTAFRLVVIPEEMSILESERAMKALQK--YGIPIDAVIVNQLIPEDVQCDFCRARRELQLKRLEMIKEKFGDKVIAYVPL 314 (349)
T ss_dssp TEEEEEEECSSHHHHHHHHHHHHHHHH--TTCCEEEEEEEEECCSCCCSHHHHHHHHHHHHHHHHHHHHSTTSEEEEEEC
T ss_pred CceEEEEECCCccHHHHHHHHHHHHHH--CCCCeeEEEEcCCccccCCCchHHHHHHHHHHHHHHHHHHcCCCcEEEecC
Confidence 467777775433222233344445555 67776 578999986521 00 112223333333222 34677
Q ss_pred ccCCCCCHHHHHHHHHhhCC
Q 014942 264 SAKYGHGVEDIRDWILTKLP 283 (415)
Q Consensus 264 SA~~g~gv~eL~~~L~~~l~ 283 (415)
.+..-.|++.|.........
T Consensus 315 ~~~e~~g~~~L~~~~~~l~~ 334 (349)
T 3ug7_A 315 LRTEAKGIETLKQIAKILYG 334 (349)
T ss_dssp CSSCSCSHHHHHHHHHHHC-
T ss_pred CCCCCCCHHHHHHHHHHHcC
Confidence 77778898887665554443
No 468
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=91.49 E-value=0.093 Score=54.47 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=21.7
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCc
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~ 139 (415)
-.++|+|+.|+|||||++.|.|.-
T Consensus 118 e~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 118 MVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCChHHHHHHHHhCCC
Confidence 389999999999999999998854
No 469
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=91.47 E-value=0.14 Score=44.22 Aligned_cols=28 Identities=32% Similarity=0.478 Sum_probs=22.7
Q ss_pred EEEEEecCCCCHHHHHHHHhCCceeeee
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQKLSIVT 144 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~~~~~~~ 144 (415)
-|++.|++|+|||||.-.|+..-...++
T Consensus 18 gvli~G~SGaGKStlal~L~~rG~~lva 45 (181)
T 3tqf_A 18 GVLITGEANIGKSELSLALIDRGHQLVC 45 (181)
T ss_dssp EEEEEESSSSSHHHHHHHHHHTTCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHcCCeEec
Confidence 6999999999999999999765444343
No 470
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=91.44 E-value=0.12 Score=46.61 Aligned_cols=24 Identities=33% Similarity=0.383 Sum_probs=20.9
Q ss_pred CccEEEEEecCCCCHHHHHHHHhC
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~ 137 (415)
+...|+|+|.+|+||||+.+.|.+
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 445899999999999999998864
No 471
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=91.44 E-value=0.096 Score=53.55 Aligned_cols=23 Identities=30% Similarity=0.686 Sum_probs=21.3
Q ss_pred EEEEEecCCCCHHHHHHHHhCCc
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQK 139 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~~ 139 (415)
.++|+|+.|+|||||++.|.|..
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999854
No 472
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=91.37 E-value=0.21 Score=48.08 Aligned_cols=22 Identities=18% Similarity=0.431 Sum_probs=19.9
Q ss_pred cEEEEEecCCCCHHHHHHHHhC
Q 014942 116 GYVAVLGKPNVGKSTLANQMIG 137 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~ 137 (415)
..|+|.|+||+|||+|+.++..
T Consensus 118 ~~vLl~GppGtGKT~la~aia~ 139 (357)
T 3d8b_A 118 KGILLFGPPGTGKTLIGKCIAS 139 (357)
T ss_dssp SEEEEESSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999964
No 473
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=91.31 E-value=0.41 Score=51.73 Aligned_cols=23 Identities=22% Similarity=0.556 Sum_probs=20.2
Q ss_pred cEEEEEecCCCCHHHHHHHHhCC
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~ 138 (415)
..++++|+||+|||+|+..+...
T Consensus 192 ~~vlL~G~pG~GKT~la~~la~~ 214 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIVEGLAQR 214 (854)
T ss_dssp CCCEEEECTTSCHHHHHHHHHHH
T ss_pred CceEEEcCCCCCHHHHHHHHHHH
Confidence 46899999999999999998753
No 474
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=91.30 E-value=0.42 Score=43.55 Aligned_cols=66 Identities=20% Similarity=0.264 Sum_probs=42.6
Q ss_pred CeeEEEEeCCCCchhhhhhHhHHHHHHHHhhhcccceEEEEecCCCCCchHHHHHHHHhcccCCCCCEEEEEeCCCC
Q 014942 162 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDL 238 (415)
Q Consensus 162 ~~~l~liDtpG~~~~~~~~l~~~~~~~~~~~~~~aD~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~piilV~NK~Dl 238 (415)
.+.++++|||+.... .....+..||.+|+++............+.+.++....+.++.+|+|+++.
T Consensus 144 ~yD~viiD~pp~~~~-----------~~~~~l~~aD~vivv~~~~~~s~~~~~~~~~~l~~~~~~~~~~vv~N~~~~ 209 (267)
T 3k9g_A 144 KYDYIVIDTNPSLDV-----------TLKNALLCSDYVIIPMTAEKWAVESLDLFNFFVRKLNLFLPIFLIITRFKK 209 (267)
T ss_dssp TCSEEEEEECSSCSH-----------HHHHHHTTCSEEEEEEESCTTHHHHHHHHHHHHHTTTCCCCEEEEEEEECT
T ss_pred CCCEEEEECcCCccH-----------HHHHHHHHCCeEEEEeCCChHHHHHHHHHHHHHHHHhccCCEEEEEecccC
Confidence 467999999984321 123346679999999987543333233444455554346788899999953
No 475
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=91.28 E-value=0.082 Score=54.70 Aligned_cols=25 Identities=44% Similarity=0.488 Sum_probs=21.9
Q ss_pred ccEEEEEecCCCCHHHHHHHHhCCc
Q 014942 115 SGYVAVLGKPNVGKSTLANQMIGQK 139 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~~~~ 139 (415)
.-.++++|++|+|||||++.|.|-.
T Consensus 369 Ge~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 369 GSLVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp TCEEEEECSSSSSHHHHHHTTTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCc
Confidence 3489999999999999999998753
No 476
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=91.20 E-value=0.082 Score=54.56 Aligned_cols=25 Identities=36% Similarity=0.298 Sum_probs=21.9
Q ss_pred ccEEEEEecCCCCHHHHHHHHhCCc
Q 014942 115 SGYVAVLGKPNVGKSTLANQMIGQK 139 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~~~~ 139 (415)
.-.++++|++|+|||||++.|.|-.
T Consensus 367 G~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 367 GETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp TCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred CCEEEEECCCCChHHHHHHHHhcCC
Confidence 3489999999999999999998753
No 477
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=91.20 E-value=0.12 Score=49.06 Aligned_cols=24 Identities=25% Similarity=0.409 Sum_probs=20.7
Q ss_pred ccEEEEEecCCCCHHHHHHHHhCC
Q 014942 115 SGYVAVLGKPNVGKSTLANQMIGQ 138 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~~~ 138 (415)
.+.|+|+|++|||||||...|...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHh
Confidence 457899999999999999999643
No 478
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=91.04 E-value=0.11 Score=53.10 Aligned_cols=24 Identities=21% Similarity=0.545 Sum_probs=21.9
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCc
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~ 139 (415)
-.++|+|+.|+|||||++.|.|..
T Consensus 313 e~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 313 EVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 389999999999999999999864
No 479
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=91.04 E-value=0.16 Score=47.42 Aligned_cols=23 Identities=35% Similarity=0.557 Sum_probs=19.6
Q ss_pred ccEEEEEecCCCCHHHHHHHHhC
Q 014942 115 SGYVAVLGKPNVGKSTLANQMIG 137 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~~ 137 (415)
...+++.|+||+|||+|+.++..
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999987654
No 480
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=91.04 E-value=0.13 Score=45.11 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=20.8
Q ss_pred CccEEEEEecCCCCHHHHHHHHhC
Q 014942 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (415)
Q Consensus 114 ~~~~V~ivG~~~vGKSSLln~l~~ 137 (415)
....|+|+|.+|+||||+.+.|..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999999864
No 481
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=91.01 E-value=0.12 Score=47.88 Aligned_cols=23 Identities=30% Similarity=0.286 Sum_probs=20.5
Q ss_pred ccEEEEEecCCCCHHHHHHHHhC
Q 014942 115 SGYVAVLGKPNVGKSTLANQMIG 137 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~~ 137 (415)
.-.++|+|++|+|||||+..|.+
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 33799999999999999999876
No 482
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=91.00 E-value=0.1 Score=46.28 Aligned_cols=21 Identities=29% Similarity=0.396 Sum_probs=18.3
Q ss_pred EEEEEecCCCCHHHHHHHHhC
Q 014942 117 YVAVLGKPNVGKSTLANQMIG 137 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~ 137 (415)
.+++.|+||+||||++.+|..
T Consensus 60 ~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 599999999999988877753
No 483
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=90.95 E-value=0.13 Score=44.83 Aligned_cols=21 Identities=29% Similarity=0.450 Sum_probs=19.2
Q ss_pred EEEEEecCCCCHHHHHHHHhC
Q 014942 117 YVAVLGKPNVGKSTLANQMIG 137 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~ 137 (415)
.|+|.|.+|+||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999854
No 484
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=90.90 E-value=0.13 Score=45.31 Aligned_cols=21 Identities=24% Similarity=0.330 Sum_probs=19.1
Q ss_pred EEEEEecCCCCHHHHHHHHhC
Q 014942 117 YVAVLGKPNVGKSTLANQMIG 137 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~ 137 (415)
.++|.|++|+|||||+..+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999864
No 485
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=90.86 E-value=11 Score=35.41 Aligned_cols=83 Identities=10% Similarity=0.011 Sum_probs=42.6
Q ss_pred ceEEEEecCCCCCchHHHHHHHHhcccCCCCCE-EEEEeCCCCCCh--hH-------HHHHHHHHhhcCCCcc--EEEcc
Q 014942 197 DCIVVLVDACKAPERIDEILEEGVGDHKDKLPI-LLVLNKKDLIKP--GE-------IAKKLEWYEKFTDVDE--VIPVS 264 (415)
Q Consensus 197 D~ii~VvD~~~~~~~~~~~l~~~l~~~~~~~pi-ilV~NK~Dl~~~--~~-------~~~~~~~~~~~~~~~~--i~~vS 264 (415)
+.+++|.-.............+.++. .+.|+ -+|+|++.-... .. -....+.+.+..+..+ .+|.-
T Consensus 223 ~~~vlV~~p~~~~~~~~~~~~~~l~~--~gi~v~gvV~N~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~iPl~ 300 (324)
T 3zq6_A 223 TSFKMVVIPEEMSIYESERAMKALEK--YSIHADGVIVNQVLPEESDCEFCNARRKLQQERLKQIREKFSDKVVAEVPLL 300 (324)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHH--TTCCEEEEEEEEECCSCCCSHHHHHHHHHHHHHHHHHHHHTTTSEEEEEECC
T ss_pred CeEEEEeCCcccHHHHHHHHHHHHHH--CCCCccEEEEcCCccccCCChHHHHHHHHHHHHHHHHHHHcCCCcEEEecCC
Confidence 47788875532222233344445555 56775 578999875421 00 0112222333332222 35666
Q ss_pred cCCCCCHHHHHHHHHhh
Q 014942 265 AKYGHGVEDIRDWILTK 281 (415)
Q Consensus 265 A~~g~gv~eL~~~L~~~ 281 (415)
+..-.|++.|.......
T Consensus 301 ~~e~~g~~~L~~~~~~l 317 (324)
T 3zq6_A 301 KKEAKGIETLEKIAEQL 317 (324)
T ss_dssp SSCSCSHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHH
Confidence 66777887776554433
No 486
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=90.80 E-value=0.49 Score=47.46 Aligned_cols=22 Identities=32% Similarity=0.623 Sum_probs=19.9
Q ss_pred EEEEEecCCCCHHHHHHHHhCC
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQ 138 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~ 138 (415)
-|+++|+||+|||+|++++.+.
T Consensus 51 gvLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 51 GILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999999763
No 487
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=90.79 E-value=0.56 Score=46.55 Aligned_cols=22 Identities=32% Similarity=0.478 Sum_probs=20.0
Q ss_pred cEEEEEecCCCCHHHHHHHHhC
Q 014942 116 GYVAVLGKPNVGKSTLANQMIG 137 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~ 137 (415)
..|++.|+||+|||+|+.++..
T Consensus 168 ~~vLL~GppGtGKT~lA~aia~ 189 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAKAVAT 189 (444)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999875
No 488
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=90.68 E-value=0.16 Score=47.28 Aligned_cols=22 Identities=36% Similarity=0.584 Sum_probs=19.8
Q ss_pred cEEEEEecCCCCHHHHHHHHhC
Q 014942 116 GYVAVLGKPNVGKSTLANQMIG 137 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~ 137 (415)
..++++|++|+|||+++..|.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~ 69 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAA 69 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999865
No 489
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=90.62 E-value=0.13 Score=53.45 Aligned_cols=23 Identities=22% Similarity=0.580 Sum_probs=21.4
Q ss_pred EEEEEecCCCCHHHHHHHHhCCc
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQK 139 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~~ 139 (415)
.++|+|+.|+|||||++.|.|..
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 79999999999999999999864
No 490
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=90.62 E-value=0.32 Score=46.71 Aligned_cols=22 Identities=32% Similarity=0.489 Sum_probs=19.7
Q ss_pred EEEEEecCCCCHHHHHHHHhCC
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQ 138 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~ 138 (415)
.|++.|+||+|||+|+.++...
T Consensus 86 ~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 86 GILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp CEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 5999999999999999998753
No 491
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=90.59 E-value=0.14 Score=45.15 Aligned_cols=22 Identities=27% Similarity=0.588 Sum_probs=19.6
Q ss_pred ccEEEEEecCCCCHHHHHHHHh
Q 014942 115 SGYVAVLGKPNVGKSTLANQMI 136 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~ 136 (415)
.+..+|+|+.|+||||++.+|.
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHHH
Confidence 4578999999999999999974
No 492
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=90.55 E-value=0.63 Score=46.26 Aligned_cols=22 Identities=32% Similarity=0.499 Sum_probs=20.0
Q ss_pred cEEEEEecCCCCHHHHHHHHhC
Q 014942 116 GYVAVLGKPNVGKSTLANQMIG 137 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~ 137 (415)
+.++|.|+||+|||||+..|..
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~ 72 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIAR 72 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHHH
Confidence 4799999999999999999875
No 493
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=90.52 E-value=0.16 Score=45.84 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=19.8
Q ss_pred cEEEEEecCCCCHHHHHHHHhC
Q 014942 116 GYVAVLGKPNVGKSTLANQMIG 137 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~ 137 (415)
..|+|.|.+|+||||+++.|..
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 4799999999999999999864
No 494
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=90.49 E-value=0.14 Score=45.81 Aligned_cols=22 Identities=27% Similarity=0.490 Sum_probs=19.1
Q ss_pred cEEEEEecCCCCHHHHHHHHhC
Q 014942 116 GYVAVLGKPNVGKSTLANQMIG 137 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~ 137 (415)
-.++|+|+||+|||||+..++.
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999887754
No 495
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=90.47 E-value=0.14 Score=47.80 Aligned_cols=21 Identities=38% Similarity=0.621 Sum_probs=19.5
Q ss_pred EEEEEecCCCCHHHHHHHHhC
Q 014942 117 YVAVLGKPNVGKSTLANQMIG 137 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~ 137 (415)
.|+|+|.||+||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999975
No 496
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=90.42 E-value=0.13 Score=49.13 Aligned_cols=24 Identities=13% Similarity=0.371 Sum_probs=20.9
Q ss_pred ccEEEEEecCCCCHHHHHHHHhCC
Q 014942 115 SGYVAVLGKPNVGKSTLANQMIGQ 138 (415)
Q Consensus 115 ~~~V~ivG~~~vGKSSLln~l~~~ 138 (415)
...++|.|++|+|||||++.+.+.
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 347999999999999999998753
No 497
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.36 E-value=0.11 Score=49.65 Aligned_cols=21 Identities=19% Similarity=0.300 Sum_probs=19.3
Q ss_pred EEEEEecCCCCHHHHHHHHhC
Q 014942 117 YVAVLGKPNVGKSTLANQMIG 137 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~ 137 (415)
.+++.|++|+||||+++.+.+
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 499999999999999999876
No 498
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=90.30 E-value=0.18 Score=47.69 Aligned_cols=30 Identities=27% Similarity=0.361 Sum_probs=24.0
Q ss_pred cEEEEEecCCCCHHHHHHHHhCCceeeeeC
Q 014942 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTN 145 (415)
Q Consensus 116 ~~V~ivG~~~vGKSSLln~l~~~~~~~~~~ 145 (415)
.-|+++|++|+||||++..|+......+++
T Consensus 145 ~~vl~~G~sG~GKSt~a~~l~~~g~~lv~d 174 (314)
T 1ko7_A 145 VGVLITGDSGIGKSETALELIKRGHRLVAD 174 (314)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHTTCEEEES
T ss_pred EEEEEEeCCCCCHHHHHHHHHhcCCceecC
Confidence 369999999999999999998765443433
No 499
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=90.26 E-value=0.18 Score=45.71 Aligned_cols=26 Identities=19% Similarity=0.359 Sum_probs=21.2
Q ss_pred CCCccEEEEEecCCCCHHHHHHHHhC
Q 014942 112 NHKSGYVAVLGKPNVGKSTLANQMIG 137 (415)
Q Consensus 112 ~~~~~~V~ivG~~~vGKSSLln~l~~ 137 (415)
.++...|+|.|.+|+||||+++.|..
T Consensus 24 ~~~~~~i~~eG~~GsGKsT~~~~l~~ 49 (236)
T 3lv8_A 24 AMNAKFIVIEGLEGAGKSTAIQVVVE 49 (236)
T ss_dssp --CCCEEEEEESTTSCHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34556899999999999999999864
No 500
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=90.18 E-value=0.13 Score=49.49 Aligned_cols=22 Identities=23% Similarity=0.474 Sum_probs=19.9
Q ss_pred EEEEEecCCCCHHHHHHHHhCC
Q 014942 117 YVAVLGKPNVGKSTLANQMIGQ 138 (415)
Q Consensus 117 ~V~ivG~~~vGKSSLln~l~~~ 138 (415)
.++|.|++|+|||||++.+.+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999998753
Done!