Query 014944
Match_columns 415
No_of_seqs 163 out of 430
Neff 2.7
Searched_HMMs 46136
Date Fri Mar 29 01:36:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014944.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014944hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03162 golden-2 like transcr 99.9 1.3E-23 2.9E-28 209.8 5.9 63 242-305 230-292 (526)
2 TIGR01557 myb_SHAQKYF myb-like 99.8 2.1E-21 4.6E-26 148.4 5.6 56 247-302 1-56 (57)
3 PF00249 Myb_DNA-binding: Myb- 97.1 0.00073 1.6E-08 48.8 4.3 48 249-300 1-48 (48)
4 PF14379 Myb_CC_LHEQLE: MYB-CC 96.9 4.7E-05 1E-09 58.7 -4.1 34 321-354 2-44 (51)
5 smart00426 TEA TEA domain. 86.5 0.77 1.7E-05 37.6 3.2 46 251-298 5-67 (68)
6 PF01285 TEA: TEA/ATTS domain 57.0 9.4 0.0002 40.1 3.1 54 245-299 45-112 (431)
7 smart00717 SANT SANT SWI3, AD 55.0 41 0.00089 22.3 5.0 43 250-297 2-44 (49)
8 PF12776 Myb_DNA-bind_3: Myb/S 50.0 15 0.00033 29.0 2.6 51 251-301 1-63 (96)
9 cd00167 SANT 'SWI3, ADA2, N-Co 48.2 58 0.0013 21.4 4.8 43 251-298 1-43 (45)
10 PF11888 DUF3408: Protein of u 36.6 30 0.00064 30.5 2.5 62 228-302 64-125 (136)
11 smart00501 BRIGHT BRIGHT, ARID 36.3 29 0.00062 28.2 2.2 44 255-299 33-83 (93)
12 PF07384 DUF1497: Protein of u 36.0 32 0.00069 27.5 2.3 22 250-271 36-57 (59)
13 TIGR02894 DNA_bind_RsfA transc 34.5 20 0.00042 33.8 1.1 54 242-301 41-94 (161)
14 KOG3841 TEF-1 and related tran 29.7 26 0.00057 37.3 1.2 55 247-303 74-145 (455)
15 KOG0850 Transcription factor D 20.8 68 0.0015 32.1 2.1 56 242-304 119-178 (245)
No 1
>PLN03162 golden-2 like transcription factor; Provisional
Probab=99.88 E-value=1.3e-23 Score=209.83 Aligned_cols=63 Identities=46% Similarity=0.729 Sum_probs=59.1
Q ss_pred ccCCCCCCcccCHHHHHHHHHHHHHhCCCCCCChhHHHhhcCCCCccHHHHHHhhccccccccc
Q 014944 242 KRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTT 305 (415)
Q Consensus 242 krs~kKpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~ILelM~V~gLTr~hVkSHLQKYRl~k~t 305 (415)
....||+||+||+|||+|||+||++|| .++||||+||++|+|+|||++||||||||||+.++.
T Consensus 230 ~~g~KKpRLrWTpELH~rFVeAV~qLG-~dKATPK~ILelMnV~GLTRenVKSHLQKYRl~rk~ 292 (526)
T PLN03162 230 APGKKKAKVDWTPELHRRFVHAVEQLG-VEKAFPSRILELMGVQCLTRHNIASHLQKYRSHRRH 292 (526)
T ss_pred CCCCCCCcccCCHHHHHHHHHHHHHhC-cCccchHHHHHHcCCCCcCHHHHHHHHHHHHHhccc
Confidence 345789999999999999999999998 799999999999999999999999999999998764
No 2
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=99.84 E-value=2.1e-21 Score=148.39 Aligned_cols=56 Identities=55% Similarity=0.844 Sum_probs=54.1
Q ss_pred CCCcccCHHHHHHHHHHHHHhCCCCCCChhHHHhhcCCCCccHHHHHHhhcccccc
Q 014944 247 APRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTV 302 (415)
Q Consensus 247 KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~ILelM~V~gLTr~hVkSHLQKYRl~ 302 (415)
|+|++||+|+|++||+||+.||+.+.|+||.|+++|++.+||+.+|+|||||||+.
T Consensus 1 k~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~k 56 (57)
T TIGR01557 1 KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLK 56 (57)
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence 68999999999999999999998789999999999999999999999999999985
No 3
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=97.12 E-value=0.00073 Score=48.78 Aligned_cols=48 Identities=23% Similarity=0.261 Sum_probs=41.3
Q ss_pred CcccCHHHHHHHHHHHHHhCCCCCCChhHHHhhcCCCCccHHHHHHhhcccc
Q 014944 249 RMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYR 300 (415)
Q Consensus 249 RlrWT~ELH~rFV~AV~qLGG~dkAtPK~ILelM~V~gLTr~hVkSHLQKYR 300 (415)
|..||+|=+.+|++||.++|. -.-+.|.+.|+ .+-|..+|++|.++|+
T Consensus 1 r~~Wt~eE~~~l~~~v~~~g~---~~W~~Ia~~~~-~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 1 RGPWTEEEDEKLLEAVKKYGK---DNWKKIAKRMP-GGRTAKQCRSRYQNLL 48 (48)
T ss_dssp S-SS-HHHHHHHHHHHHHSTT---THHHHHHHHHS-SSSTHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCC---cHHHHHHHHcC-CCCCHHHHHHHHHhhC
Confidence 568999999999999999992 26889999998 8999999999999885
No 4
>PF14379 Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE motif
Probab=96.86 E-value=4.7e-05 Score=58.69 Aligned_cols=34 Identities=21% Similarity=0.299 Sum_probs=27.9
Q ss_pred CCchhhhhhccCCCCCC-CC--------chhhhcCcccCCccc
Q 014944 321 GDTSEDIMFGIQHPRRP-ET--------SSIQQQGRASNGLWS 354 (415)
Q Consensus 321 g~~sEAL~lQmEvQrRL-E~--------~sIeqQGr~~q~LWS 354 (415)
..++|||++|||||||| |+ ++||++|||++.+..
T Consensus 2 ~~i~EALr~QmEvQrrLhEQLEvQr~Lqlrieaqgkyl~~ile 44 (51)
T PF14379_consen 2 MQITEALRMQMEVQRRLHEQLEVQRHLQLRIEAQGKYLQSILE 44 (51)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 35789999999999998 32 589999999877653
No 5
>smart00426 TEA TEA domain.
Probab=86.47 E-value=0.77 Score=37.64 Aligned_cols=46 Identities=24% Similarity=0.353 Sum_probs=30.6
Q ss_pred ccCHHHHHHHHHHHHHhCCCCCCChh-HHHhh--c-C-----------C--CCccHHHHHHhhcc
Q 014944 251 RWTTTLHARFVHAVELLGGHERATPK-SVLEL--M-D-----------V--KDLTLAHVKSHLQM 298 (415)
Q Consensus 251 rWT~ELH~rFV~AV~qLGG~dkAtPK-~ILel--M-~-----------V--~gLTr~hVkSHLQK 298 (415)
+|.++|-..|++|++..- ...+=| +++.. | + . .-=|+.+|+||||.
T Consensus 5 vWp~~lE~Af~~aL~~~~--~~g~~kik~~~r~k~~gRNelIs~YI~~~tGk~Rt~KQVsShIQv 67 (68)
T smart00426 5 VWSPDIEQAFQEALAIYP--PCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQV 67 (68)
T ss_pred cCcHHHHHHHHHHHHHcC--ccCcccchhhhcCcccchhHHHHHHHHHHhCCccchhhhcchhee
Confidence 799999999999999874 223322 22211 0 0 1 23578899999985
No 6
>PF01285 TEA: TEA/ATTS domain family; InterPro: IPR000818 Transcriptional enhancer activators are nuclear proteins that contain a TEA/ATTSdomain, a DNA-binding region of 66-68 amino acids. The TEA/ATTS domain is found in the N-termini of certain gene regulatory proteins, such as the Simian virus 40 (SV40) enhancer factor TEF-1, yeast trans-acting factor TEC-1 (which is required for TY1 enhancer activity), and the Aspergillus abaA regulatory gene product. SV40 and retroviral enhancers, and those to which TEF-1, TEC-1 and abaA proteins bind, contain GT-IIC sites: the TEA/ATTS domain may therefore recognise and bind such sites. Secondary structure predictions suggest the presence of 3 helices, but have not confirmed the presence of the helix-turn-helix motif characteristic of many DNA-binding proteins: DNA-binding may therefore be effected by a different mechanism [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3L15_B 2HZD_A 3KYS_A 3JUA_C 4EAZ_B.
Probab=57.04 E-value=9.4 Score=40.07 Aligned_cols=54 Identities=19% Similarity=0.187 Sum_probs=29.1
Q ss_pred CCCCCcccCHHHHHHHHHHHHHhCCCCCCChh--------------HHHhhcCCCCccHHHHHHhhccc
Q 014944 245 MRAPRMRWTTTLHARFVHAVELLGGHERATPK--------------SVLELMDVKDLTLAHVKSHLQMY 299 (415)
Q Consensus 245 ~kKpRlrWT~ELH~rFV~AV~qLGG~dkAtPK--------------~ILelM~V~gLTr~hVkSHLQKY 299 (415)
..+..-+|.+++...|++|+...-=..++.-+ .|...-| +.=|+.+|+||||..
T Consensus 45 ~~~~~~vw~~~~e~af~~al~~~~~~g~~k~~~~~~~~grn~li~~yi~~~tg-~~rt~kqvsshiqvl 112 (431)
T PF01285_consen 45 DGDGEGVWPPDIEQAFQEALAIYPPCGRRKLSDEGKMYGRNELISDYIKLKTG-KTRTRKQVSSHIQVL 112 (431)
T ss_dssp -GGGS--S-HHHHHHHHHHHHHS-SSS---HHHH-----THHHHHHHHHHHHS-----SHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHhCCCCCCcccccccccccchhHHHHHHHHHhC-cccchhHHHHHHHHH
Confidence 35678899999999999999877311112211 1111111 346889999999998
No 7
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=55.01 E-value=41 Score=22.32 Aligned_cols=43 Identities=12% Similarity=0.200 Sum_probs=32.1
Q ss_pred cccCHHHHHHHHHHHHHhCCCCCCChhHHHhhcCCCCccHHHHHHhhc
Q 014944 250 MRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ 297 (415)
Q Consensus 250 lrWT~ELH~rFV~AV~qLGG~dkAtPK~ILelM~V~gLTr~hVkSHLQ 297 (415)
-.||++=...|+.+|.++| . ..=+.|.+.|+ +=|...|+.+-.
T Consensus 2 ~~Wt~~E~~~l~~~~~~~g-~--~~w~~Ia~~~~--~rt~~~~~~~~~ 44 (49)
T smart00717 2 GEWTEEEDELLIELVKKYG-K--NNWEKIAKELP--GRTAEQCRERWN 44 (49)
T ss_pred CCCCHHHHHHHHHHHHHHC-c--CCHHHHHHHcC--CCCHHHHHHHHH
Confidence 4699999999999999998 1 23456666665 667777776644
No 8
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=49.98 E-value=15 Score=28.97 Aligned_cols=51 Identities=14% Similarity=0.236 Sum_probs=34.3
Q ss_pred ccCHHHHHHHHHHHHHh---CCC-CCCChh-----HHHhhcCC---CCccHHHHHHhhccccc
Q 014944 251 RWTTTLHARFVHAVELL---GGH-ERATPK-----SVLELMDV---KDLTLAHVKSHLQMYRT 301 (415)
Q Consensus 251 rWT~ELH~rFV~AV~qL---GG~-dkAtPK-----~ILelM~V---~gLTr~hVkSHLQKYRl 301 (415)
+||++..+.||+++-+. |.- .....| .|.+.|+- ..+|..+|++|+...|.
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~ 63 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKK 63 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHH
Confidence 59999999999988333 433 233333 35555554 45889999999875444
No 9
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=48.18 E-value=58 Score=21.37 Aligned_cols=43 Identities=14% Similarity=0.200 Sum_probs=32.5
Q ss_pred ccCHHHHHHHHHHHHHhCCCCCCChhHHHhhcCCCCccHHHHHHhhcc
Q 014944 251 RWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQM 298 (415)
Q Consensus 251 rWT~ELH~rFV~AV~qLGG~dkAtPK~ILelM~V~gLTr~hVkSHLQK 298 (415)
.||.+=...|+.+|.++|- ..=+.|.+.|+ +=|..+|+.+.++
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~---~~w~~Ia~~~~--~rs~~~~~~~~~~ 43 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGK---NNWEKIAKELP--GRTPKQCRERWRN 43 (45)
T ss_pred CCCHHHHHHHHHHHHHHCc---CCHHHHHhHcC--CCCHHHHHHHHHH
Confidence 4999999999999999982 23466777764 3677788876544
No 10
>PF11888 DUF3408: Protein of unknown function (DUF3408); InterPro: IPR021823 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 128 to 160 amino acids in length.
Probab=36.61 E-value=30 Score=30.51 Aligned_cols=62 Identities=23% Similarity=0.369 Sum_probs=43.2
Q ss_pred ccchhhcccccCccccCCCCCCcccCHHHHHHHHHHHHHhCCCCCCChhHHHhhcCCCCccHHHHHHhhcccccc
Q 014944 228 QGLMRSRFMSRFPAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTV 302 (415)
Q Consensus 228 ~g~~rs~~~~~~P~krs~kKpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~ILelM~V~gLTr~hVkSHLQKYRl~ 302 (415)
-.-.+++|+.. .+-..|++ +-=..|+|++....|..+||. + |.|.|+--.=++-||..|+..
T Consensus 64 ~~~Y~~~FL~~--~~~~~R~~-vyI~~e~h~~l~~Iv~~ig~~-~---------~si~~yidNIL~~Hle~~~ee 125 (136)
T PF11888_consen 64 LEDYRETFLKR--PKIKARKG-VYISRETHERLSRIVRVIGER-K---------MSISGYIDNILRHHLEEYREE 125 (136)
T ss_pred HHHHHHHhCCC--CCCCCCee-eEECHHHHHHHHHHHHHHCCC-C---------CcHHHHHHHHHHHHHHHHHHH
Confidence 35567888843 33345555 888999999999999999963 2 444444444466899998864
No 11
>smart00501 BRIGHT BRIGHT, ARID (A/T-rich interaction domain) domain. DNA-binding domain containing a helix-turn-helix structure
Probab=36.27 E-value=29 Score=28.18 Aligned_cols=44 Identities=20% Similarity=0.336 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHhCCCCCCC----hhHHHhhcCCCCc---cHHHHHHhhccc
Q 014944 255 TLHARFVHAVELLGGHERAT----PKSVLELMDVKDL---TLAHVKSHLQMY 299 (415)
Q Consensus 255 ELH~rFV~AV~qLGG~dkAt----PK~ILelM~V~gL---Tr~hVkSHLQKY 299 (415)
+|++.|+ +|..+||.++.+ =+.|.+.|+++.- ....++++-+||
T Consensus 33 dL~~Ly~-~V~~~GG~~~v~~~~~W~~Va~~lg~~~~~~~~~~~lk~~Y~k~ 83 (93)
T smart00501 33 DLYRLYR-LVQERGGYDQVTKDKKWKEIARELGIPDTSTSAASSLRKHYERY 83 (93)
T ss_pred cHHHHHH-HHHHccCHHHHcCCCCHHHHHHHhCCCcccchHHHHHHHHHHHH
Confidence 7999998 588999976533 3568889999752 244566666665
No 12
>PF07384 DUF1497: Protein of unknown function (DUF1497); InterPro: IPR009972 This entry is represented by Bacteriophage r1t, Orf17. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage and bacterial proteins of around 59 residues in length. Members of this family seem to be found exclusively in Lactococcus lactis and the bacteriophages that infect this organism. The function of this family is unknown.
Probab=36.03 E-value=32 Score=27.52 Aligned_cols=22 Identities=23% Similarity=0.561 Sum_probs=19.4
Q ss_pred cccCHHHHHHHHHHHHHhCCCC
Q 014944 250 MRWTTTLHARFVHAVELLGGHE 271 (415)
Q Consensus 250 lrWT~ELH~rFV~AV~qLGG~d 271 (415)
-.+..|+|..|-+-|+.|||.+
T Consensus 36 ~kfnqem~aefheri~klggk~ 57 (59)
T PF07384_consen 36 NKFNQEMQAEFHERIKKLGGKN 57 (59)
T ss_pred hHhhHHHHHHHHHHHHHhcccc
Confidence 4578999999999999999854
No 13
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=34.45 E-value=20 Score=33.78 Aligned_cols=54 Identities=31% Similarity=0.434 Sum_probs=40.6
Q ss_pred ccCCCCCCcccCHHHHHHHHHHHHHhCCCCCCChhHHHhhcCCCCccHHHHHHhhccccc
Q 014944 242 KRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 301 (415)
Q Consensus 242 krs~kKpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~ILelM~V~gLTr~hVkSHLQKYRl 301 (415)
.|..-...+||...+-.++.+||+..- ..+-.+|+. ...||++.|-+-||.|..
T Consensus 41 ~RTsAACGFRWNs~VRkqY~~~i~~AK-kqRk~~~~~-----~~~ltl~~vI~fLq~l~~ 94 (161)
T TIGR02894 41 NRTAAACGFRWNAYVRKQYEEAIELAK-KQRKELKRE-----AGSLTLQDVISFLQNLKT 94 (161)
T ss_pred cccHHHhcchHHHHHHHHHHHHHHHHH-HHHhccccC-----cccCCHHHHHHHHHHHHh
Confidence 455667899999999999999998764 222222221 267999999999999985
No 14
>KOG3841 consensus TEF-1 and related transcription factor, TEAD family [Transcription]
Probab=29.70 E-value=26 Score=37.25 Aligned_cols=55 Identities=22% Similarity=0.289 Sum_probs=37.1
Q ss_pred CCCcccCHHHHHHHHHHHHHhCCCCCCChhHHHhhcC--------------C---CCccHHHHHHhhccccccc
Q 014944 247 APRMRWTTTLHARFVHAVELLGGHERATPKSVLELMD--------------V---KDLTLAHVKSHLQMYRTVK 303 (415)
Q Consensus 247 KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~ILelM~--------------V---~gLTr~hVkSHLQKYRl~k 303 (415)
-.-=+|+++.-+.|.||+...- ..-+=|-||.--| . +-=||.+|.||.|.....|
T Consensus 74 daegvWSpdIEqsFqEALaiyp--pcGrrKIilsdegkmyGRNELIarYIKlrtgktRTrKQVSSHIQVlarrk 145 (455)
T KOG3841|consen 74 DAEGVWSPDIEQSFQEALAIYP--PCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRK 145 (455)
T ss_pred ccccccChhHHHHHHHHHhhcC--CCCceeEEEccCccccchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH
Confidence 3455899999999999998873 2223343433111 1 4568999999999765443
No 15
>KOG0850 consensus Transcription factor DLX and related proteins with LIM Zn-binding and HOX domains [Transcription]
Probab=20.85 E-value=68 Score=32.14 Aligned_cols=56 Identities=32% Similarity=0.376 Sum_probs=39.8
Q ss_pred ccCCCCCCcccCH----HHHHHHHHHHHHhCCCCCCChhHHHhhcCCCCccHHHHHHhhcccccccc
Q 014944 242 KRSMRAPRMRWTT----TLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKT 304 (415)
Q Consensus 242 krs~kKpRlrWT~----ELH~rFV~AV~qLGG~dkAtPK~ILelM~V~gLTr~hVkSHLQKYRl~k~ 304 (415)
.+++||||-.... .|.+||-..=- |-=.|+| ||--+=|||..+||+=.|.=|.+.+
T Consensus 119 ~KK~RKPRTIYSS~QLqaL~rRFQkTQY-LALPERA------eLAAsLGLTQTQVKIWFQNrRSK~K 178 (245)
T KOG0850|consen 119 GKKVRKPRTIYSSLQLQALNRRFQQTQY-LALPERA------ELAASLGLTQTQVKIWFQNRRSKFK 178 (245)
T ss_pred cccccCCcccccHHHHHHHHHHHhhcch-hcCcHHH------HHHHHhCCchhHhhhhhhhhHHHHH
Confidence 4458999999986 68889977532 2223333 4555569999999999997776533
Done!