BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014945
(415 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4B8J|A Chain A, Rimp_alpha1a
Length = 528
Score = 709 bits (1831), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/416 (83%), Positives = 373/416 (89%), Gaps = 4/416 (0%)
Query: 1 MSLRPNARTEVRRSKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQPLT 60
MSLRP+ R EVRR++YKVAVDAEEGRRRREDNMVEIRK++REESLLKKRREGLQA P+
Sbjct: 3 MSLRPSERVEVRRNRYKVAVDAEEGRRRREDNMVEIRKSRREESLLKKRREGLQAQAPVP 62
Query: 61 NSAALD-NKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRF 119
SAA +KKLESLPAM+ GV+SDD N+QL+ATTQFRKLLSIERSPPI EVIQSGVVPRF
Sbjct: 63 ASAATGVDKKLESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRF 122
Query: 120 IEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVW 179
++FL+R+DFPQLQFEAAWALTNIASGTSENT+VVIDHGAVPIFV+LL S +DDVREQAVW
Sbjct: 123 VQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVW 182
Query: 180 ALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQT 239
ALGNVAGDSPKCRDLVL+NGAL+PLLAQ NEH KLSMLRNATWTLSNFCRGKPQP FEQT
Sbjct: 183 ALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQT 242
Query: 240 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSV 299
RPALPAL RLIHSND+EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL HPSPSV
Sbjct: 243 RPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSV 302
Query: 300 LIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVN 359
LIPALRTVGNIVTGDD QTQCII+HQALPCLL LLTQN KKSIKKEACWTISNITAGN +
Sbjct: 303 LIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKD 362
Query: 360 XXXXXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKYKFFYVSRTC 415
PLVNLL AEF+IKKEAAWAISNATSGGS++QIKY VS C
Sbjct: 363 QIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKY---LVSEGC 415
Score = 72.0 bits (175), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 63/234 (26%), Positives = 116/234 (49%), Gaps = 20/234 (8%)
Query: 134 EAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGN-VAGDSPKCR 192
+A WAL+ ++ GT++ + VI+ G P V LL P+ V A+ +GN V GD + +
Sbjct: 263 DACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQ 322
Query: 193 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPA-LERLIH 251
++ + AL LL+ ++ K S+ + A WT+SN G + + L L+
Sbjct: 323 -CIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQ 381
Query: 252 SNDDEVLTDACWALS-YLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI 310
+ + ++ +A WA+S S G++D+I+ ++ G L +LL P ++ L + NI
Sbjct: 382 TAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENI 441
Query: 311 V----------TGD-DMQTQCIINHQALPCLLDLLTQN----YKKSIK-KEACW 348
+ GD ++ +Q I + L + +L + + Y+K++K EA W
Sbjct: 442 LKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYW 495
>pdb|2YNS|A Chain A, Rimp_alpha_b54nls
pdb|2YNS|B Chain B, Rimp_alpha_b54nls
pdb|4B8O|A Chain A, Rimp_alpha_sv40tagnls
pdb|4B8P|A Chain A, Rimp_alpha_a89nls
pdb|4B8P|B Chain B, Rimp_alpha_a89nls
Length = 490
Score = 604 bits (1557), Expect = e-173, Method: Compositional matrix adjust.
Identities = 291/344 (84%), Positives = 310/344 (90%), Gaps = 3/344 (0%)
Query: 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 131
SLPAM+ GV+SDD N+QL+ATTQFRKLLSIERSPPI EVIQSGVVPRF++FL+R+DFPQL
Sbjct: 37 SLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQL 96
Query: 132 QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 191
QFEAAWALTNIASGTSENT+VVIDHGAVPIFV+LL S +DDVREQAVWALGNVAGDSPKC
Sbjct: 97 QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKC 156
Query: 192 RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH 251
RDLVL+NGAL+PLLAQ NEH KLSMLRNATWTLSNFCRGKPQP FEQTRPALPAL RLIH
Sbjct: 157 RDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIH 216
Query: 252 SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV 311
SND+EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL HPSPSVLIPALRTVGNIV
Sbjct: 217 SNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIV 276
Query: 312 TGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXXXX 371
TGDD QTQCII+HQALPCLL LLTQN KKSIKKEACWTISNITAGN +
Sbjct: 277 TGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIG 336
Query: 372 PLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKYKFFYVSRTC 415
PLVNLL AEF+IKKEAAWAISNATSGGS++QIKY VS C
Sbjct: 337 PLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKY---LVSEGC 377
Score = 71.6 bits (174), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 93/181 (51%), Gaps = 4/181 (2%)
Query: 134 EAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGN-VAGDSPKCR 192
+A WAL+ ++ GT++ + VI+ G P V LL P+ V A+ +GN V GD + +
Sbjct: 225 DACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQ 284
Query: 193 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPA-LERLIH 251
++ + AL LL+ ++ K S+ + A WT+SN G + + L L+
Sbjct: 285 -CIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQ 343
Query: 252 SNDDEVLTDACWALS-YLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI 310
+ + ++ +A WA+S S G++D+I+ ++ G L +LL P ++ L + NI
Sbjct: 344 TAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENI 403
Query: 311 V 311
+
Sbjct: 404 L 404
>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 530
Score = 381 bits (978), Expect = e-106, Method: Compositional matrix adjust.
Identities = 211/402 (52%), Positives = 266/402 (66%), Gaps = 14/402 (3%)
Query: 10 EVRRSKYKVA--VDAEEGRRRREDNMVEIRKNKREESLLKKRR-----EGLQAHQPLTNS 62
E RR+ +K A+E RRRR+ VE+RK KR+E+L K+R +G + + +S
Sbjct: 15 EYRRTNFKNKGRFSADELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEEDESS 74
Query: 63 AALDNKKL----ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPR 118
+ D + + LP M + SDD QL AT +FR++LS E PPI+ VIQ+GVVPR
Sbjct: 75 VSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPR 134
Query: 119 FIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAV 178
+EF+ + LQ EAAWALTNIASGTS T+VV+D AVP+F++LL + + +V+EQA+
Sbjct: 135 LVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAI 194
Query: 179 WALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG-KPQPLFE 237
WALGNVAGDS RD VL A+ P+L FN + K S++R ATWTLSN CRG KPQP +
Sbjct: 195 WALGNVAGDSTDYRDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWS 253
Query: 238 QTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSP 297
ALP L +LI+S D E L DACWA+SYLSDG + IQAVI+ + RLVELL H S
Sbjct: 254 VVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHEST 313
Query: 298 SVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN 357
V PALR VGNIVTG+D+QTQ +IN LP L LL + K++IKKEACWTISNITAGN
Sbjct: 314 LVQTPALRAVGNIVTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGN 372
Query: 358 VNXXXXXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGG 399
PLV LL AE++ KKEA WAISNA+SGG
Sbjct: 373 TEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGG 414
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 4/98 (4%)
Query: 110 VIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSP 169
VI +GV+P LS ++ EA W ++NI +G +E + VID +P V+LL
Sbjct: 337 VINAGVLPALRLLLSSPK-ENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVA 395
Query: 170 TDDVREQAVWALGNVAGDSPKCRDLV---LSNGALMPL 204
+++A WA+ N + + D++ +S G + PL
Sbjct: 396 EYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPL 433
>pdb|3TJ3|A Chain A, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
pdb|3TJ3|B Chain B, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
Length = 447
Score = 365 bits (938), Expect = e-101, Method: Compositional matrix adjust.
Identities = 200/333 (60%), Positives = 234/333 (70%), Gaps = 3/333 (0%)
Query: 76 MVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQS-GVVPRFIEFLSRDDFPQLQFE 134
M+ ++S QL AT +FRKLLS E +PPI+EVI + GVV RF+EFL R + LQFE
Sbjct: 22 MIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFE 81
Query: 135 AAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDL 194
+AW LTNIASG S TR+VI GAVPIF+ LLSS +DV+EQAVWALGN+AGDS CRD
Sbjct: 82 SAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDY 141
Query: 195 VLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSN 253
VL L PLL F++ +L+M RNA W LSN CRGK P P F + P L L L+ +
Sbjct: 142 VLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVS 201
Query: 254 DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG 313
D +VL DACWALSYLSDG NDKIQAVI+AGVC RLVELL H V+ PALR VGNIVTG
Sbjct: 202 DTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTG 261
Query: 314 DDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXXXXPL 373
DD+QTQ I+N AL L L + K+SIKKEACWTISNITAGN L
Sbjct: 262 DDIQTQVILNCSALQ-SLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPAL 320
Query: 374 VNLLLNAEFEIKKEAAWAISNATSGGSNEQIKY 406
+++L AEF +KEAAWAI+NATSGGS EQIKY
Sbjct: 321 ISILQTAEFRTRKEAAWAITNATSGGSAEQIKY 353
>pdb|2JDQ|A Chain A, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
pdb|2JDQ|B Chain B, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
Length = 450
Score = 365 bits (938), Expect = e-101, Method: Compositional matrix adjust.
Identities = 200/333 (60%), Positives = 234/333 (70%), Gaps = 3/333 (0%)
Query: 76 MVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQS-GVVPRFIEFLSRDDFPQLQFE 134
M+ ++S QL AT +FRKLLS E +PPI+EVI + GVV RF+EFL R + LQFE
Sbjct: 25 MIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFE 84
Query: 135 AAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDL 194
+AW LTNIASG S TR+VI GAVPIF+ LLSS +DV+EQAVWALGN+AGDS CRD
Sbjct: 85 SAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDY 144
Query: 195 VLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSN 253
VL L PLL F++ +L+M RNA W LSN CRGK P P F + P L L L+ +
Sbjct: 145 VLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVS 204
Query: 254 DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG 313
D +VL DACWALSYLSDG NDKIQAVI+AGVC RLVELL H V+ PALR VGNIVTG
Sbjct: 205 DTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTG 264
Query: 314 DDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXXXXPL 373
DD+QTQ I+N AL L L + K+SIKKEACWTISNITAGN L
Sbjct: 265 DDIQTQVILNCSALQ-SLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPAL 323
Query: 374 VNLLLNAEFEIKKEAAWAISNATSGGSNEQIKY 406
+++L AEF +KEAAWAI+NATSGGS EQIKY
Sbjct: 324 ISILQTAEFRTRKEAAWAITNATSGGSAEQIKY 356
>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
pdb|1BK6|B Chain B, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
Length = 422
Score = 355 bits (912), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 191/344 (55%), Positives = 234/344 (68%), Gaps = 4/344 (1%)
Query: 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 132
LP M + SDD QL AT +FR++LS E PPI+ VIQ+GVVPR +EF+ + LQ
Sbjct: 1 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 60
Query: 133 FEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 192
EAAWALTNIASGTS T+VV+D AVP+F++LL + + +V+EQA+WALGNVAGDS R
Sbjct: 61 LEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYR 120
Query: 193 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG-KPQPLFEQTRPALPALERLIH 251
D VL A+ P+L FN + K S++R ATWTLSN CRG KPQP + ALP L +LI+
Sbjct: 121 DYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIY 179
Query: 252 SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV 311
S D E L DACWA+SYLSDG + IQAVI+ + RLVELL H S V PALR VGNIV
Sbjct: 180 SMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIV 239
Query: 312 TGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXXXX 371
TG+D+QTQ +IN LP L LL + K++IKKEACWTISNITAGN
Sbjct: 240 TGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIP 298
Query: 372 PLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKYKFFYVSRTC 415
PLV LL AE++ KKEA WAISNA+SGG ++ VS+ C
Sbjct: 299 PLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYL-VSQGC 341
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 4/98 (4%)
Query: 110 VIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSP 169
VI +GV+P LS ++ EA W ++NI +G +E + VID +P V+LL
Sbjct: 249 VINAGVLPALRLLLSSPK-ENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVA 307
Query: 170 TDDVREQAVWALGNVAGDSPKCRDLV---LSNGALMPL 204
+++A WA+ N + + D++ +S G + PL
Sbjct: 308 EYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPL 345
>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae
pdb|1BK5|B Chain B, Karyopherin Alpha From Saccharomyces Cerevisiae
Length = 422
Score = 355 bits (912), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 191/344 (55%), Positives = 234/344 (68%), Gaps = 4/344 (1%)
Query: 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 132
LP M + SDD QL AT +FR++LS E PPI+ VIQ+GVVPR +EF+ + LQ
Sbjct: 1 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 60
Query: 133 FEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 192
EAAWALTNIASGTS T+VV+D AVP+F++LL + + +V+EQA+WALGNVAGDS R
Sbjct: 61 LEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYR 120
Query: 193 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG-KPQPLFEQTRPALPALERLIH 251
D VL A+ P+L FN + K S++R ATWTLSN CRG KPQP + ALP L +LI+
Sbjct: 121 DYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIY 179
Query: 252 SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV 311
S D E L DACWA+SYLSDG + IQAVI+ + RLVELL H S V PALR VGNIV
Sbjct: 180 SMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIV 239
Query: 312 TGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXXXX 371
TG+D+QTQ +IN LP L LL + K++IKKEACWTISNITAGN
Sbjct: 240 TGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIP 298
Query: 372 PLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKYKFFYVSRTC 415
PLV LL AE++ KKEA WAISNA+SGG ++ VS+ C
Sbjct: 299 PLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYL-VSQGC 341
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 4/98 (4%)
Query: 110 VIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSP 169
VI +GV+P LS ++ EA W ++NI +G +E + VID +P V+LL
Sbjct: 249 VINAGVLPALRLLLSSPK-ENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVA 307
Query: 170 TDDVREQAVWALGNVAGDSPKCRDLV---LSNGALMPL 204
+++A WA+ N + + D++ +S G + PL
Sbjct: 308 EYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPL 345
>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A
Nucleoplasmin Nls Peptide
Length = 424
Score = 353 bits (906), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 191/346 (55%), Positives = 234/346 (67%), Gaps = 4/346 (1%)
Query: 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQ 130
+ LP M + SDD QL AT +FR++LS E PPI+ VIQ+GVVPR +EF+ +
Sbjct: 1 QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEM 60
Query: 131 LQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 190
LQ EAAWALTNIASGTS T+VV+D AVP+F++LL + + +V+EQA+WALGNVAGDS
Sbjct: 61 LQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTD 120
Query: 191 CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG-KPQPLFEQTRPALPALERL 249
RD VL A+ P+L FN + K S++R ATWTLSN CRG KPQP + ALP L +L
Sbjct: 121 YRDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKL 179
Query: 250 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 309
I+S D E L DACWA+SYLSDG + IQAVI+ + RLVELL H S V PALR VGN
Sbjct: 180 IYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGN 239
Query: 310 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXX 369
IVTG+D+QTQ +IN LP L LL + K++IKKEACWTISNITAGN
Sbjct: 240 IVTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANL 298
Query: 370 XXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKYKFFYVSRTC 415
PLV LL AE + KKEA WAISNA+SGG ++ VS+ C
Sbjct: 299 IPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYL-VSQGC 343
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 52/98 (53%), Gaps = 4/98 (4%)
Query: 110 VIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSP 169
VI +GV+P LS ++ EA W ++NI +G +E + VID +P V+LL
Sbjct: 251 VINAGVLPALRLLLSSPK-ENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVA 309
Query: 170 TDDVREQAVWALGNVAGDSPKCRDLV---LSNGALMPL 204
D +++A WA+ N + + D++ +S G + PL
Sbjct: 310 EDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPL 347
>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
pdb|1EE4|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
Length = 423
Score = 353 bits (906), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 191/346 (55%), Positives = 234/346 (67%), Gaps = 4/346 (1%)
Query: 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQ 130
+ LP M + SDD QL AT +FR++LS E PPI+ VIQ+GVVPR +EF+ +
Sbjct: 1 QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEM 60
Query: 131 LQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 190
LQ EAAWALTNIASGTS T+VV+D AVP+F++LL + + +V+EQA+WALGNVAGDS
Sbjct: 61 LQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTD 120
Query: 191 CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG-KPQPLFEQTRPALPALERL 249
RD VL A+ P+L FN + K S++R ATWTLSN CRG KPQP + ALP L +L
Sbjct: 121 YRDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKL 179
Query: 250 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 309
I+S D E L DACWA+SYLSDG + IQAVI+ + RLVELL H S V PALR VGN
Sbjct: 180 IYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGN 239
Query: 310 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXX 369
IVTG+D+QTQ +IN LP L LL + K++IKKEACWTISNITAGN
Sbjct: 240 IVTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANL 298
Query: 370 XXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKYKFFYVSRTC 415
PLV LL AE + KKEA WAISNA+SGG ++ VS+ C
Sbjct: 299 IPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYL-VSQGC 343
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 52/98 (53%), Gaps = 4/98 (4%)
Query: 110 VIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSP 169
VI +GV+P LS ++ EA W ++NI +G +E + VID +P V+LL
Sbjct: 251 VINAGVLPALRLLLSSPK-ENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVA 309
Query: 170 TDDVREQAVWALGNVAGDSPKCRDLV---LSNGALMPL 204
D +++A WA+ N + + D++ +S G + PL
Sbjct: 310 EDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPL 347
>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
pdb|1UN0|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
Length = 443
Score = 353 bits (905), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 191/344 (55%), Positives = 233/344 (67%), Gaps = 4/344 (1%)
Query: 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 132
LP M + SDD QL AT +FR++LS E PPI+ VIQ+GVVPR +EF+ + LQ
Sbjct: 2 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 61
Query: 133 FEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 192
EAAWALTNIASGTS T+VV+D AVP+F++LL + + +V+EQA+WALGNVAGDS R
Sbjct: 62 LEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYR 121
Query: 193 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG-KPQPLFEQTRPALPALERLIH 251
D VL A+ P+L FN + K S++R ATWTLSN CRG KPQP + ALP L +LI+
Sbjct: 122 DYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIY 180
Query: 252 SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV 311
S D E L DACWA+SYLSDG + IQAVI+ + RLVELL H S V PALR VGNIV
Sbjct: 181 SMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIV 240
Query: 312 TGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXXXX 371
TG+D+QTQ +IN LP L LL + K++IKKEACWTISNITAGN
Sbjct: 241 TGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIP 299
Query: 372 PLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKYKFFYVSRTC 415
PLV LL AE + KKEA WAISNA+SGG ++ VS+ C
Sbjct: 300 PLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYL-VSQGC 342
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 52/98 (53%), Gaps = 4/98 (4%)
Query: 110 VIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSP 169
VI +GV+P LS ++ EA W ++NI +G +E + VID +P V+LL
Sbjct: 250 VINAGVLPALRLLLSSPK-ENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVA 308
Query: 170 TDDVREQAVWALGNVAGDSPKCRDLV---LSNGALMPL 204
D +++A WA+ N + + D++ +S G + PL
Sbjct: 309 EDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPL 346
>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex
pdb|2C1T|B Chain B, Structure Of The Kap60p:nup2 Complex
Length = 454
Score = 352 bits (903), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 191/344 (55%), Positives = 233/344 (67%), Gaps = 4/344 (1%)
Query: 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 132
LP M + SDD QL AT +FR++LS E PPI+ VIQ+GVVPR +EF+ + LQ
Sbjct: 2 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 61
Query: 133 FEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 192
EAAWALTNIASGTS T+VV+D AVP+F++LL + + +V+EQA+WALGNVAGDS R
Sbjct: 62 LEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYR 121
Query: 193 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG-KPQPLFEQTRPALPALERLIH 251
D VL A+ P+L FN + K S++R ATWTLSN CRG KPQP + ALP L +LI+
Sbjct: 122 DYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIY 180
Query: 252 SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV 311
S D E L DACWA+SYLSDG + IQAVI+ + RLVELL H S V PALR VGNIV
Sbjct: 181 SMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIV 240
Query: 312 TGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXXXX 371
TG+D+QTQ +IN LP L LL + K++IKKEACWTISNITAGN
Sbjct: 241 TGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIP 299
Query: 372 PLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKYKFFYVSRTC 415
PLV LL AE + KKEA WAISNA+SGG ++ VS+ C
Sbjct: 300 PLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYL-VSQGC 342
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 52/98 (53%), Gaps = 4/98 (4%)
Query: 110 VIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSP 169
VI +GV+P LS ++ EA W ++NI +G +E + VID +P V+LL
Sbjct: 250 VINAGVLPALRLLLSSPK-ENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVA 308
Query: 170 TDDVREQAVWALGNVAGDSPKCRDLV---LSNGALMPL 204
D +++A WA+ N + + D++ +S G + PL
Sbjct: 309 EDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPL 346
>pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN
ALPHA2
Length = 529
Score = 345 bits (884), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 193/410 (47%), Positives = 257/410 (62%), Gaps = 12/410 (2%)
Query: 5 PNARTEVRRSKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGL---QAHQPLTN 61
P AR ++K K D+ E RRRR + VE+RK K++E +LK+R A PL
Sbjct: 10 PAARLNRFKNKGK---DSTEMRRRRIEVNVELRKAKKDEQMLKRRNVSSFPDDATSPLQE 66
Query: 62 SAALDNKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIE 121
+ S+ +V G+ S++ QL AT RKLLS E+ PPI+ +I++G++P+F+
Sbjct: 67 NRNNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVS 126
Query: 122 FLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWAL 181
FL + D +QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP + EQAVWAL
Sbjct: 127 FLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWAL 186
Query: 182 GNVAGDSPKCRDLVLSNGALMPLLAQFN----EHAKLSMLRNATWTLSNFCRGK-PQPLF 236
GN+AG RDLV+ +GA+ PLLA LRN TWTLSN CR K P P
Sbjct: 187 GNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPL 246
Query: 237 EQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPS 296
+ LP L RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL
Sbjct: 247 DAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATE 306
Query: 297 PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG 356
++ PALR +GNIVTG D QTQ +I+ AL LLT N K +I+KEA WT+SNITAG
Sbjct: 307 LPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAG 365
Query: 357 NVNXXXXXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKY 406
+ LV +L A+F+ +K AAWAI+N TSGG+ EQI Y
Sbjct: 366 RQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVY 415
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 60/121 (49%), Gaps = 6/121 (4%)
Query: 65 LDNKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLS 124
+D L P+++ + NIQ +AT + + R I +V+ G+VP + LS
Sbjct: 332 IDAGALAVFPSLLT---NPKTNIQKEATWTMSNI-TAGRQDQIQQVVNHGLVPFLVGVLS 387
Query: 125 RDDFPQLQFEAAWALTNIAS-GTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGN 183
+ DF + Q AAWA+TN S GT E ++ G + + LLS+ + + + A+ N
Sbjct: 388 KADF-KTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISN 446
Query: 184 V 184
+
Sbjct: 447 I 447
>pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex
pdb|3RZX|A Chain A, Mouse Importin Alpha-Ku70 Nls Peptide Complex
pdb|3OQS|A Chain A, Crystal Structure Of Importin-Alpha Bound To A Clic4 Nls
Peptide
pdb|3UVU|A Chain A, Structural Basis Of Nuclear Import Of Flap Endonuclease 1
(fen1)
Length = 510
Score = 330 bits (846), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 172/340 (50%), Positives = 226/340 (66%), Gaps = 6/340 (1%)
Query: 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 131
S+ +V G+ S++ QL AT RKLLS E+ PPI+ +I++G++P+F+ FL + D +
Sbjct: 58 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 117
Query: 132 QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 191
QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP + EQAVWALGN+AGD
Sbjct: 118 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 177
Query: 192 RDLVLSNGALMPLLAQFN----EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPAL 246
RDLV+ +GA+ PLLA LRN TWTLSN CR K P P + LP L
Sbjct: 178 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 237
Query: 247 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 306
RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL ++ PALR
Sbjct: 238 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 297
Query: 307 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXX 366
+GNIVTG D QTQ +I+ AL LLT N K +I+KEA WT+SNITAG +
Sbjct: 298 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 356
Query: 367 XXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKY 406
LV +L A+F+ +KEAAWAI+N TSGG+ EQI Y
Sbjct: 357 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVY 396
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 61/121 (50%), Gaps = 6/121 (4%)
Query: 65 LDNKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLS 124
+D L P+++ + NIQ +AT + + R I +V+ G+VP + LS
Sbjct: 313 IDAGALAVFPSLLT---NPKTNIQKEATWTMSNI-TAGRQDQIQQVVNHGLVPFLVGVLS 368
Query: 125 RDDFPQLQFEAAWALTNIAS-GTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGN 183
+ DF + Q EAAWA+TN S GT E ++ G + + LLS+ + + + A+ N
Sbjct: 369 KADF-KTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISN 427
Query: 184 V 184
+
Sbjct: 428 I 428
>pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls
Length = 496
Score = 330 bits (846), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 172/340 (50%), Positives = 226/340 (66%), Gaps = 6/340 (1%)
Query: 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 131
S+ +V G+ S++ QL AT RKLLS E+ PPI+ +I++G++P+F+ FL + D +
Sbjct: 44 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 103
Query: 132 QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 191
QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP + EQAVWALGN+AGD
Sbjct: 104 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 163
Query: 192 RDLVLSNGALMPLLAQFN----EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPAL 246
RDLV+ +GA+ PLLA LRN TWTLSN CR K P P + LP L
Sbjct: 164 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 223
Query: 247 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 306
RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL ++ PALR
Sbjct: 224 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 283
Query: 307 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXX 366
+GNIVTG D QTQ +I+ AL LLT N K +I+KEA WT+SNITAG +
Sbjct: 284 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 342
Query: 367 XXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKY 406
LV +L A+F+ +KEAAWAI+N TSGG+ EQI Y
Sbjct: 343 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVY 382
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 61/121 (50%), Gaps = 6/121 (4%)
Query: 65 LDNKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLS 124
+D L P+++ + NIQ +AT + + R I +V+ G+VP + LS
Sbjct: 299 IDAGALAVFPSLLT---NPKTNIQKEATWTMSNITA-GRQDQIQQVVNHGLVPFLVGVLS 354
Query: 125 RDDFPQLQFEAAWALTNIAS-GTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGN 183
+ DF + Q EAAWA+TN S GT E ++ G + + LLS+ + + + A+ N
Sbjct: 355 KADF-KTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISN 413
Query: 184 V 184
+
Sbjct: 414 I 414
>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide
Complex
pdb|1EJY|I Chain I, Mouse Importin Alpha-Nucleoplasmin Nls Peptide Complex
pdb|1IQ1|C Chain C, Crystal Structure Of The Importin-Alpha(44-54)-Importin-
Alpha(70-529) Complex
pdb|1PJM|B Chain B, Mouse Importin Alpha-Bipartite Nls From Human
Retinoblastoma Protein Complex
pdb|1PJN|B Chain B, Mouse Importin Alpha-Bipartite Nls N1n2 From Xenopus
Laevis Phosphoprotein Complex
pdb|3KND|A Chain A, Tpx2:importin-Alpha Complex
pdb|3Q5U|A Chain A, A Minimal Nls From Human Scramblase 4 Complexed With
Importin Alpha
Length = 460
Score = 330 bits (846), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 172/340 (50%), Positives = 226/340 (66%), Gaps = 6/340 (1%)
Query: 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 131
S+ +V G+ S++ QL AT RKLLS E+ PPI+ +I++G++P+F+ FL + D +
Sbjct: 8 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 67
Query: 132 QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 191
QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP + EQAVWALGN+AGD
Sbjct: 68 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 127
Query: 192 RDLVLSNGALMPLLAQFN----EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPAL 246
RDLV+ +GA+ PLLA LRN TWTLSN CR K P P + LP L
Sbjct: 128 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 187
Query: 247 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 306
RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL ++ PALR
Sbjct: 188 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 247
Query: 307 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXX 366
+GNIVTG D QTQ +I+ AL LLT N K +I+KEA WT+SNITAG +
Sbjct: 248 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 306
Query: 367 XXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKY 406
LV +L A+F+ +KEAAWAI+N TSGG+ EQI Y
Sbjct: 307 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVY 346
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 61/121 (50%), Gaps = 6/121 (4%)
Query: 65 LDNKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLS 124
+D L P+++ + NIQ +AT + + R I +V+ G+VP + LS
Sbjct: 263 IDAGALAVFPSLLT---NPKTNIQKEATWTMSNITA-GRQDQIQQVVNHGLVPFLVGVLS 318
Query: 125 RDDFPQLQFEAAWALTNIAS-GTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGN 183
+ DF + Q EAAWA+TN S GT E ++ G + + LLS+ + + + A+ N
Sbjct: 319 KADF-KTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISN 377
Query: 184 V 184
+
Sbjct: 378 I 378
>pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide
Complex
pdb|1Q1T|C Chain C, Mouse Importin Alpha: Non-Phosphorylated Sv40 Cn Peptide
Complex
Length = 466
Score = 330 bits (846), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 172/340 (50%), Positives = 226/340 (66%), Gaps = 6/340 (1%)
Query: 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 131
S+ +V G+ S++ QL AT RKLLS E+ PPI+ +I++G++P+F+ FL + D +
Sbjct: 14 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 73
Query: 132 QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 191
QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP + EQAVWALGN+AGD
Sbjct: 74 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 133
Query: 192 RDLVLSNGALMPLLAQFN----EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPAL 246
RDLV+ +GA+ PLLA LRN TWTLSN CR K P P + LP L
Sbjct: 134 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 193
Query: 247 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 306
RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL ++ PALR
Sbjct: 194 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 253
Query: 307 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXX 366
+GNIVTG D QTQ +I+ AL LLT N K +I+KEA WT+SNITAG +
Sbjct: 254 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 312
Query: 367 XXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKY 406
LV +L A+F+ +KEAAWAI+N TSGG+ EQI Y
Sbjct: 313 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVY 352
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 61/121 (50%), Gaps = 6/121 (4%)
Query: 65 LDNKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLS 124
+D L P+++ + NIQ +AT + + R I +V+ G+VP + LS
Sbjct: 269 IDAGALAVFPSLLT---NPKTNIQKEATWTMSNITA-GRQDQIQQVVNHGLVPFLVGVLS 324
Query: 125 RDDFPQLQFEAAWALTNIAS-GTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGN 183
+ DF + Q EAAWA+TN S GT E ++ G + + LLS+ + + + A+ N
Sbjct: 325 KADF-KTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISN 383
Query: 184 V 184
+
Sbjct: 384 I 384
>pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex
Length = 509
Score = 330 bits (845), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 172/340 (50%), Positives = 226/340 (66%), Gaps = 6/340 (1%)
Query: 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 131
S+ +V G+ S++ QL AT RKLLS E+ PPI+ +I++G++P+F+ FL + D +
Sbjct: 58 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 117
Query: 132 QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 191
QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP + EQAVWALGN+AGD
Sbjct: 118 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 177
Query: 192 RDLVLSNGALMPLLAQFN----EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPAL 246
RDLV+ +GA+ PLLA LRN TWTLSN CR K P P + LP L
Sbjct: 178 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 237
Query: 247 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 306
RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL ++ PALR
Sbjct: 238 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 297
Query: 307 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXX 366
+GNIVTG D QTQ +I+ AL LLT N K +I+KEA WT+SNITAG +
Sbjct: 298 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 356
Query: 367 XXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKY 406
LV +L A+F+ +KEAAWAI+N TSGG+ EQI Y
Sbjct: 357 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVY 396
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 61/121 (50%), Gaps = 6/121 (4%)
Query: 65 LDNKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLS 124
+D L P+++ + NIQ +AT + + R I +V+ G+VP + LS
Sbjct: 313 IDAGALAVFPSLLT---NPKTNIQKEATWTMSNI-TAGRQDQIQQVVNHGLVPFLVGVLS 368
Query: 125 RDDFPQLQFEAAWALTNIAS-GTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGN 183
+ DF + Q EAAWA+TN S GT E ++ G + + LLS+ + + + A+ N
Sbjct: 369 KADF-KTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISN 427
Query: 184 V 184
+
Sbjct: 428 I 428
>pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls
Length = 461
Score = 330 bits (845), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 172/340 (50%), Positives = 226/340 (66%), Gaps = 6/340 (1%)
Query: 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 131
S+ +V G+ S++ QL AT RKLLS E+ PPI+ +I++G++P+F+ FL + D +
Sbjct: 42 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 101
Query: 132 QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 191
QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP + EQAVWALGN+AGD
Sbjct: 102 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 161
Query: 192 RDLVLSNGALMPLLAQFN----EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPAL 246
RDLV+ +GA+ PLLA LRN TWTLSN CR K P P + LP L
Sbjct: 162 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 221
Query: 247 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 306
RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL ++ PALR
Sbjct: 222 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 281
Query: 307 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXX 366
+GNIVTG D QTQ +I+ AL LLT N K +I+KEA WT+SNITAG +
Sbjct: 282 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 340
Query: 367 XXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKY 406
LV +L A+F+ +KEAAWAI+N TSGG+ EQI Y
Sbjct: 341 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVY 380
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 61/121 (50%), Gaps = 6/121 (4%)
Query: 65 LDNKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLS 124
+D L P+++ + NIQ +AT + + R I +V+ G+VP + LS
Sbjct: 297 IDAGALAVFPSLLT---NPKTNIQKEATWTMSNI-TAGRQDQIQQVVNHGLVPFLVGVLS 352
Query: 125 RDDFPQLQFEAAWALTNIAS-GTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGN 183
+ DF + Q EAAWA+TN S GT E ++ G + + LLS+ + + + A+ N
Sbjct: 353 KADF-KTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISN 411
Query: 184 V 184
+
Sbjct: 412 I 412
>pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex
pdb|3UKX|B Chain B, Mouse Importin Alpha: Bimax2 Peptide Complex
pdb|3UKY|B Chain B, Mouse Importin Alpha: Yeast Cbp80 Cnls Complex
pdb|3UKZ|B Chain B, Mouse Importin Alpha: Mouse Cbp80 Cnls Complex
pdb|3UL0|B Chain B, Mouse Importin Alpha: Mouse Cbp80y8d Cnls Complex
pdb|3UL1|B Chain B, Mouse Importin Alpha: Nucleoplasmin Cnls Peptide Complex
Length = 510
Score = 330 bits (845), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 172/340 (50%), Positives = 226/340 (66%), Gaps = 6/340 (1%)
Query: 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 131
S+ +V G+ S++ QL AT RKLLS E+ PPI+ +I++G++P+F+ FL + D +
Sbjct: 58 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 117
Query: 132 QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 191
QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP + EQAVWALGN+AGD
Sbjct: 118 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 177
Query: 192 RDLVLSNGALMPLLAQFN----EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPAL 246
RDLV+ +GA+ PLLA LRN TWTLSN CR K P P + LP L
Sbjct: 178 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 237
Query: 247 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 306
RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL ++ PALR
Sbjct: 238 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 297
Query: 307 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXX 366
+GNIVTG D QTQ +I+ AL LLT N K +I+KEA WT+SNITAG +
Sbjct: 298 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 356
Query: 367 XXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKY 406
LV +L A+F+ +KEAAWAI+N TSGG+ EQI Y
Sbjct: 357 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVY 396
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 61/121 (50%), Gaps = 6/121 (4%)
Query: 65 LDNKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLS 124
+D L P+++ + NIQ +AT + + R I +V+ G+VP + LS
Sbjct: 313 IDAGALAVFPSLLT---NPKTNIQKEATWTMSNI-TAGRQDQIQQVVNHGLVPFLVGVLS 368
Query: 125 RDDFPQLQFEAAWALTNIAS-GTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGN 183
+ DF + Q EAAWA+TN S GT E ++ G + + LLS+ + + + A+ N
Sbjct: 369 KADF-KTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISN 427
Query: 184 V 184
+
Sbjct: 428 I 428
>pdb|1IAL|A Chain A, Importin Alpha, Mouse
Length = 453
Score = 330 bits (845), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 172/340 (50%), Positives = 226/340 (66%), Gaps = 6/340 (1%)
Query: 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 131
S+ +V G+ S++ QL AT RKLLS E+ PPI+ +I++G++P+F+ FL + D +
Sbjct: 34 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 93
Query: 132 QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 191
QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP + EQAVWALGN+AGD
Sbjct: 94 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 153
Query: 192 RDLVLSNGALMPLLAQFN----EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPAL 246
RDLV+ +GA+ PLLA LRN TWTLSN CR K P P + LP L
Sbjct: 154 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 213
Query: 247 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 306
RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL ++ PALR
Sbjct: 214 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 273
Query: 307 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXX 366
+GNIVTG D QTQ +I+ AL LLT N K +I+KEA WT+SNITAG +
Sbjct: 274 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 332
Query: 367 XXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKY 406
LV +L A+F+ +KEAAWAI+N TSGG+ EQI Y
Sbjct: 333 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVY 372
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 61/121 (50%), Gaps = 6/121 (4%)
Query: 65 LDNKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLS 124
+D L P+++ + NIQ +AT + + R I +V+ G+VP + LS
Sbjct: 289 IDAGALAVFPSLLT---NPKTNIQKEATWTMSNI-TAGRQDQIQQVVNHGLVPFLVGVLS 344
Query: 125 RDDFPQLQFEAAWALTNIAS-GTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGN 183
+ DF + Q EAAWA+TN S GT E ++ G + + LLS+ + + + A+ N
Sbjct: 345 KADF-KTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISN 403
Query: 184 V 184
+
Sbjct: 404 I 404
>pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex
Length = 427
Score = 330 bits (845), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 172/340 (50%), Positives = 226/340 (66%), Gaps = 6/340 (1%)
Query: 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 131
S+ +V G+ S++ QL AT RKLLS E+ PPI+ +I++G++P+F+ FL + D +
Sbjct: 7 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 66
Query: 132 QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 191
QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP + EQAVWALGN+AGD
Sbjct: 67 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 126
Query: 192 RDLVLSNGALMPLLAQFN----EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPAL 246
RDLV+ +GA+ PLLA LRN TWTLSN CR K P P + LP L
Sbjct: 127 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 186
Query: 247 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 306
RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL ++ PALR
Sbjct: 187 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 246
Query: 307 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXX 366
+GNIVTG D QTQ +I+ AL LLT N K +I+KEA WT+SNITAG +
Sbjct: 247 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 305
Query: 367 XXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKY 406
LV +L A+F+ +KEAAWAI+N TSGG+ EQI Y
Sbjct: 306 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVY 345
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 61/121 (50%), Gaps = 6/121 (4%)
Query: 65 LDNKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLS 124
+D L P+++ + NIQ +AT + + R I +V+ G+VP + LS
Sbjct: 262 IDAGALAVFPSLLT---NPKTNIQKEATWTMSNI-TAGRQDQIQQVVNHGLVPFLVGVLS 317
Query: 125 RDDFPQLQFEAAWALTNIAS-GTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGN 183
+ DF + Q EAAWA+TN S GT E ++ G + + LLS+ + + + A+ N
Sbjct: 318 KADF-KTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISN 376
Query: 184 V 184
+
Sbjct: 377 I 377
>pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex
Length = 427
Score = 330 bits (845), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 172/340 (50%), Positives = 226/340 (66%), Gaps = 6/340 (1%)
Query: 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 131
S+ +V G+ S++ QL AT RKLLS E+ PPI+ +I++G++P+F+ FL + D +
Sbjct: 8 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 67
Query: 132 QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 191
QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP + EQAVWALGN+AGD
Sbjct: 68 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 127
Query: 192 RDLVLSNGALMPLLAQFN----EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPAL 246
RDLV+ +GA+ PLLA LRN TWTLSN CR K P P + LP L
Sbjct: 128 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 187
Query: 247 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 306
RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL ++ PALR
Sbjct: 188 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 247
Query: 307 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXX 366
+GNIVTG D QTQ +I+ AL LLT N K +I+KEA WT+SNITAG +
Sbjct: 248 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 306
Query: 367 XXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKY 406
LV +L A+F+ +KEAAWAI+N TSGG+ EQI Y
Sbjct: 307 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVY 346
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 61/121 (50%), Gaps = 6/121 (4%)
Query: 65 LDNKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLS 124
+D L P+++ + NIQ +AT + + R I +V+ G+VP + LS
Sbjct: 263 IDAGALAVFPSLLT---NPKTNIQKEATWTMSNI-TAGRQDQIQQVVNHGLVPFLVGVLS 318
Query: 125 RDDFPQLQFEAAWALTNIAS-GTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGN 183
+ DF + Q EAAWA+TN S GT E ++ G + + LLS+ + + + A+ N
Sbjct: 319 KADF-KTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISN 377
Query: 184 V 184
+
Sbjct: 378 I 378
>pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical
Plscr1-Nls
Length = 428
Score = 329 bits (844), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 172/340 (50%), Positives = 226/340 (66%), Gaps = 6/340 (1%)
Query: 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 131
S+ +V G+ S++ QL AT RKLLS E+ PPI+ +I++G++P+F+ FL + D +
Sbjct: 8 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 67
Query: 132 QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 191
QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP + EQAVWALGN+AGD
Sbjct: 68 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 127
Query: 192 RDLVLSNGALMPLLAQFN----EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPAL 246
RDLV+ +GA+ PLLA LRN TWTLSN CR K P P + LP L
Sbjct: 128 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 187
Query: 247 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 306
RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL ++ PALR
Sbjct: 188 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 247
Query: 307 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXX 366
+GNIVTG D QTQ +I+ AL LLT N K +I+KEA WT+SNITAG +
Sbjct: 248 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 306
Query: 367 XXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKY 406
LV +L A+F+ +KEAAWAI+N TSGG+ EQI Y
Sbjct: 307 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVY 346
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 61/121 (50%), Gaps = 6/121 (4%)
Query: 65 LDNKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLS 124
+D L P+++ + NIQ +AT + + R I +V+ G+VP + LS
Sbjct: 263 IDAGALAVFPSLLT---NPKTNIQKEATWTMSNI-TAGRQDQIQQVVNHGLVPFLVGVLS 318
Query: 125 RDDFPQLQFEAAWALTNIAS-GTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGN 183
+ DF + Q EAAWA+TN S GT E ++ G + + LLS+ + + + A+ N
Sbjct: 319 KADF-KTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISN 377
Query: 184 V 184
+
Sbjct: 378 I 378
>pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine
Encephalitis Virus Capsid Protein Nls And Importin Alpha
Length = 426
Score = 329 bits (844), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 172/340 (50%), Positives = 226/340 (66%), Gaps = 6/340 (1%)
Query: 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 131
S+ +V G+ S++ QL AT RKLLS E+ PPI+ +I++G++P+F+ FL + D +
Sbjct: 7 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 66
Query: 132 QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 191
QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP + EQAVWALGN+AGD
Sbjct: 67 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 126
Query: 192 RDLVLSNGALMPLLAQFN----EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPAL 246
RDLV+ +GA+ PLLA LRN TWTLSN CR K P P + LP L
Sbjct: 127 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 186
Query: 247 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 306
RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL ++ PALR
Sbjct: 187 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 246
Query: 307 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXX 366
+GNIVTG D QTQ +I+ AL LLT N K +I+KEA WT+SNITAG +
Sbjct: 247 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 305
Query: 367 XXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKY 406
LV +L A+F+ +KEAAWAI+N TSGG+ EQI Y
Sbjct: 306 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVY 345
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 61/121 (50%), Gaps = 6/121 (4%)
Query: 65 LDNKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLS 124
+D L P+++ + NIQ +AT + + R I +V+ G+VP + LS
Sbjct: 262 IDAGALAVFPSLLT---NPKTNIQKEATWTMSNI-TAGRQDQIQQVVNHGLVPFLVGVLS 317
Query: 125 RDDFPQLQFEAAWALTNIAS-GTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGN 183
+ DF + Q EAAWA+TN S GT E ++ G + + LLS+ + + + A+ N
Sbjct: 318 KADF-KTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISN 376
Query: 184 V 184
+
Sbjct: 377 I 377
>pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex
Length = 424
Score = 329 bits (844), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 172/340 (50%), Positives = 226/340 (66%), Gaps = 6/340 (1%)
Query: 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 131
S+ +V G+ S++ QL AT RKLLS E+ PPI+ +I++G++P+F+ FL + D +
Sbjct: 3 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 62
Query: 132 QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 191
QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP + EQAVWALGN+AGD
Sbjct: 63 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 122
Query: 192 RDLVLSNGALMPLLAQFN----EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPAL 246
RDLV+ +GA+ PLLA LRN TWTLSN CR K P P + LP L
Sbjct: 123 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 182
Query: 247 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 306
RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL ++ PALR
Sbjct: 183 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 242
Query: 307 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXX 366
+GNIVTG D QTQ +I+ AL LLT N K +I+KEA WT+SNITAG +
Sbjct: 243 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 301
Query: 367 XXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKY 406
LV +L A+F+ +KEAAWAI+N TSGG+ EQI Y
Sbjct: 302 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVY 341
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 61/121 (50%), Gaps = 6/121 (4%)
Query: 65 LDNKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLS 124
+D L P+++ + NIQ +AT + + R I +V+ G+VP + LS
Sbjct: 258 IDAGALAVFPSLLT---NPKTNIQKEATWTMSNI-TAGRQDQIQQVVNHGLVPFLVGVLS 313
Query: 125 RDDFPQLQFEAAWALTNIAS-GTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGN 183
+ DF + Q EAAWA+TN S GT E ++ G + + LLS+ + + + A+ N
Sbjct: 314 KADF-KTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISN 372
Query: 184 V 184
+
Sbjct: 373 I 373
>pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With
Importin-Alpha
Length = 422
Score = 329 bits (844), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 172/340 (50%), Positives = 226/340 (66%), Gaps = 6/340 (1%)
Query: 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 131
S+ +V G+ S++ QL AT RKLLS E+ PPI+ +I++G++P+F+ FL + D +
Sbjct: 3 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 62
Query: 132 QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 191
QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP + EQAVWALGN+AGD
Sbjct: 63 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 122
Query: 192 RDLVLSNGALMPLLAQFN----EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPAL 246
RDLV+ +GA+ PLLA LRN TWTLSN CR K P P + LP L
Sbjct: 123 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 182
Query: 247 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 306
RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL ++ PALR
Sbjct: 183 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 242
Query: 307 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXX 366
+GNIVTG D QTQ +I+ AL LLT N K +I+KEA WT+SNITAG +
Sbjct: 243 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 301
Query: 367 XXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKY 406
LV +L A+F+ +KEAAWAI+N TSGG+ EQI Y
Sbjct: 302 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVY 341
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 61/121 (50%), Gaps = 6/121 (4%)
Query: 65 LDNKKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLS 124
+D L P+++ + NIQ +AT + + R I +V+ G+VP + LS
Sbjct: 258 IDAGALAVFPSLLT---NPKTNIQKEATWTMSNI-TAGRQDQIQQVVNHGLVPFLVGVLS 313
Query: 125 RDDFPQLQFEAAWALTNIAS-GTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGN 183
+ DF + Q EAAWA+TN S GT E ++ G + + LLS+ + + + A+ N
Sbjct: 314 KADF-KTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISN 372
Query: 184 V 184
+
Sbjct: 373 I 373
>pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex.
pdb|3FEY|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex
Length = 467
Score = 324 bits (831), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 171/340 (50%), Positives = 224/340 (65%), Gaps = 6/340 (1%)
Query: 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 131
S+ +V G+ S + QL AT RKLLS E+ PPI+ +I++G++P+F+ FL R D +
Sbjct: 9 SVDDIVKGINSSNVENQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGRTDCSPI 68
Query: 132 QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 191
QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP + EQAVWALGN+AGD
Sbjct: 69 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSVF 128
Query: 192 RDLVLSNGALMPLLAQFNEHAKLSM----LRNATWTLSNFCRGK-PQPLFEQTRPALPAL 246
RDLV+ GA+ PLLA S+ LRN TWTLSN CR K P P + LP L
Sbjct: 129 RDLVIKYGAVDPLLALLAVPDMSSLACGYLRNLTWTLSNLCRNKNPAPPIDAVEQILPTL 188
Query: 247 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 306
RL+H +D EVL D CWA+SYL+DG N++I V++ GV P+LV+LL ++ PALR
Sbjct: 189 VRLLHHDDPEVLADTCWAISYLTDGPNERIGMVVKTGVVPQLVKLLGASELPIVTPALRA 248
Query: 307 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXX 366
+GNIVTG D QTQ +I+ AL LLT N K +I+KEA WT+SNITAG +
Sbjct: 249 IGNIVTGTDEQTQVVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 307
Query: 367 XXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKY 406
LV++L A+F+ +KEA WA++N TSGG+ EQI Y
Sbjct: 308 HGLVPFLVSVLSKADFKTQKEAVWAVTNYTSGGTVEQIVY 347
>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein
pdb|4DB8|B Chain B, Designed Armadillo-Repeat Protein
pdb|4DB8|C Chain C, Designed Armadillo-Repeat Protein
pdb|4DB8|D Chain D, Designed Armadillo-Repeat Protein
Length = 252
Score = 148 bits (374), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 91/227 (40%), Positives = 131/227 (57%), Gaps = 12/227 (5%)
Query: 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 132
LP M + SDD QL AT +F ++LS + + I VI +G +P ++ LS + LQ
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILS-DGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 133 FEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 192
EA WAL+NIASG +E + VID GA+P V+LLSSP + + ++A+WAL N+A +
Sbjct: 73 -EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 131
Query: 193 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRP-----ALPALE 247
V+ GAL P L Q +L+ A W LSN G EQ + ALPAL
Sbjct: 132 QAVIDAGAL-PALVQLLSSPNEQILQEALWALSNIASGG----NEQIQAVIDAGALPALV 186
Query: 248 RLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH 294
+L+ S ++++L +A WALS ++ G N++ QAV EAG +L +L H
Sbjct: 187 QLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSH 233
Score = 141 bits (356), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 89/236 (37%), Positives = 131/236 (55%), Gaps = 12/236 (5%)
Query: 116 VPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVRE 175
+P+ + L+ DD Q Q A + I S +E + VID GA+P V+LLSSP + + +
Sbjct: 14 LPQMTQQLNSDDM-QEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 176 QAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPL 235
+A+WAL N+A + V+ GAL P L Q +L+ A W LSN G
Sbjct: 73 EALWALSNIASGGNEQIQAVIDAGAL-PALVQLLSSPNEQILQEALWALSNIASGG---- 127
Query: 236 FEQTRP-----ALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVE 290
EQ + ALPAL +L+ S ++++L +A WALS ++ G N++IQAVI+AG P LV+
Sbjct: 128 NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQ 187
Query: 291 LLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEA 346
LL P+ +L AL + NI +G + Q Q + AL L L + +K I+KEA
Sbjct: 188 LLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEK-IQKEA 242
Score = 120 bits (300), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 68/162 (41%), Positives = 99/162 (61%), Gaps = 2/162 (1%)
Query: 242 ALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLI 301
ALPAL +L+ S ++++L +A WALS ++ G N++IQAVI+AG P LV+LL P+ +L
Sbjct: 55 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 114
Query: 302 PALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXX 361
AL + NI +G + Q Q +I+ ALP L+ LL+ + + I +EA W +SNI +G
Sbjct: 115 EALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQI 173
Query: 362 XXXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQ 403
LV LL + +I +EA WA+SN SGG NEQ
Sbjct: 174 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQ 214
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 61/121 (50%), Gaps = 2/121 (1%)
Query: 285 CPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKK 344
P++ + L + A R I++ + Q Q +I+ ALP L+ LL+ + + I +
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLS-SPNEQILQ 72
Query: 345 EACWTISNITAGNVNXXXXXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQI 404
EA W +SNI +G LV LL + +I +EA WA+SN SGG NEQI
Sbjct: 73 EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQI 131
Query: 405 K 405
+
Sbjct: 132 Q 132
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 69/129 (53%), Gaps = 8/129 (6%)
Query: 59 LTNSAALDNKKLES------LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQ 112
L+N A+ N+++++ LPA+V + S + I +A + S + I VI
Sbjct: 120 LSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS-GGNEQIQAVID 178
Query: 113 SGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDD 172
+G +P ++ LS + LQ EA WAL+NIASG +E + V + GA+ +L S +
Sbjct: 179 AGALPALVQLLSSPNEQILQ-EALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEK 237
Query: 173 VREQAVWAL 181
++++A AL
Sbjct: 238 IQKEAQEAL 246
>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|B Chain B, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|C Chain C, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|D Chain D, Designed Armadillo Repeat Protein (Yiim3aii)
Length = 210
Score = 114 bits (286), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 75/197 (38%), Positives = 108/197 (54%), Gaps = 4/197 (2%)
Query: 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 132
LP M + SDD QL AT +F ++LS + + I VI +G +P ++ LS + LQ
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILS-DGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 133 FEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 192
EA WAL+NIASG +E + VID GA+P V+LLSSP + + ++A+WAL N+A +
Sbjct: 73 -EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 131
Query: 193 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR-GKPQPLFEQTRPALPALERLIH 251
V+ GAL P L Q +L+ A W LSN G Q + AL LE+L
Sbjct: 132 QAVIDAGAL-PALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQS 190
Query: 252 SNDDEVLTDACWALSYL 268
++++ +A AL L
Sbjct: 191 HENEKIQKEAQEALEKL 207
Score = 102 bits (255), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 58/151 (38%), Positives = 89/151 (58%), Gaps = 1/151 (0%)
Query: 242 ALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLI 301
ALPAL +L+ S ++++L +A WALS ++ G N++IQAVI+AG P LV+LL P+ +L
Sbjct: 55 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 114
Query: 302 PALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXX 361
AL + NI +G + Q Q +I+ ALP L+ LL+ + + I +EA W +SNI +G
Sbjct: 115 EALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQK 173
Query: 362 XXXXXXXXXXPLVNLLLNAEFEIKKEAAWAI 392
L L + +I+KEA A+
Sbjct: 174 QAVKEAGALEKLEQLQSHENEKIQKEAQEAL 204
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 64/162 (39%), Positives = 92/162 (56%), Gaps = 4/162 (2%)
Query: 243 LPALERLIHSNDDEVLTDACWALS-YLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLI 301
LP + + ++S+D + A S LSDG N++IQAVI+AG P LV+LL P+ +L
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDG-NEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 302 PALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXX 361
AL + NI +G + Q Q +I+ ALP L+ LL+ + + I +EA W +SNI +G
Sbjct: 73 EALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQI 131
Query: 362 XXXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQ 403
LV LL + +I +EA WA+SN SGG NEQ
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQ 172
>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|B Chain B, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|C Chain C, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|D Chain D, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|E Chain E, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|F Chain F, Designed Armadillo Repeat Protein (Yiiim3aiii)
Length = 210
Score = 105 bits (261), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 63/161 (39%), Positives = 92/161 (57%), Gaps = 2/161 (1%)
Query: 243 LPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIP 302
LP + + ++S D + L A LS ++ G N++IQAVI+AG P LV+LL P+ +L
Sbjct: 14 LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 303 ALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXX 362
AL + NI +G + Q Q +I+ ALP L+ LL+ + + I +EA W +SNI +G
Sbjct: 74 ALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQIQ 132
Query: 363 XXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQ 403
LV LL + +I +EA WA+SN SGG NEQ
Sbjct: 133 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQ 172
Score = 104 bits (260), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 74/199 (37%), Positives = 105/199 (52%), Gaps = 8/199 (4%)
Query: 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERS--PPINEVIQSGVVPRFIEFLSRDDFPQ 130
LP MV + S D Q + + RKL I I VI +G +P ++ LS +
Sbjct: 14 LPQMVQQLNSPD---QQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQI 70
Query: 131 LQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 190
LQ EA WAL+NIASG +E + VID GA+P V+LLSSP + + ++A+WAL N+A +
Sbjct: 71 LQ-EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 129
Query: 191 CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR-GKPQPLFEQTRPALPALERL 249
V+ GAL P L Q +L+ A W LSN G Q + A PALE+L
Sbjct: 130 QIQAVIDAGAL-PALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGAEPALEQL 188
Query: 250 IHSNDDEVLTDACWALSYL 268
S ++++ +A AL +
Sbjct: 189 QSSPNEKIQKEAQEALEKI 207
Score = 103 bits (256), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 51/116 (43%), Positives = 78/116 (67%), Gaps = 1/116 (0%)
Query: 242 ALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLI 301
ALPAL +L+ S ++++L +A WALS ++ G N++IQAVI+AG P LV+LL P+ +L
Sbjct: 55 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 114
Query: 302 PALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN 357
AL + NI +G + Q Q +I+ ALP L+ LL+ + + I +EA W +SNI +G
Sbjct: 115 EALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGG 169
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 71/129 (55%), Gaps = 8/129 (6%)
Query: 59 LTNSAALDNKKLES------LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQ 112
L+N A+ N+++++ LPA+V + S + I +A + S + I VI
Sbjct: 78 LSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS-GGNEQIQAVID 136
Query: 113 SGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDD 172
+G +P ++ LS + LQ EA WAL+NIASG +E + V + GA P +L SSP +
Sbjct: 137 AGALPALVQLLSSPNEQILQ-EALWALSNIASGGNEQKQAVKEAGAEPALEQLQSSPNEK 195
Query: 173 VREQAVWAL 181
++++A AL
Sbjct: 196 IQKEAQEAL 204
>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii)
Length = 210
Score = 104 bits (260), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 63/161 (39%), Positives = 92/161 (57%), Gaps = 2/161 (1%)
Query: 243 LPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIP 302
LP + + ++S D + L A LS ++ G N++IQAVI+AG P LV+LL P+ +L
Sbjct: 14 LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 303 ALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXX 362
AL + NI +G + Q Q +I+ ALP L+ LL+ + + I +EA W +SNI +G
Sbjct: 74 ALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQIQ 132
Query: 363 XXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQ 403
LV LL + +I +EA WA+SN SGG NEQ
Sbjct: 133 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQ 172
Score = 102 bits (255), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 51/116 (43%), Positives = 78/116 (67%), Gaps = 1/116 (0%)
Query: 242 ALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLI 301
ALPAL +L+ S ++++L +A WALS ++ G N++IQAVI+AG P LV+LL P+ +L
Sbjct: 55 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 114
Query: 302 PALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN 357
AL + NI +G + Q Q +I+ ALP L+ LL+ + + I +EA W +SNI +G
Sbjct: 115 EALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGG 169
Score = 102 bits (254), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 73/199 (36%), Positives = 103/199 (51%), Gaps = 8/199 (4%)
Query: 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERS--PPINEVIQSGVVPRFIEFLSRDDFPQ 130
LP MV + S D Q + + RKL I I VI +G +P ++ LS +
Sbjct: 14 LPQMVQQLNSPD---QQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQI 70
Query: 131 LQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 190
LQ EA WAL+NIASG +E + VID GA+P V+LLSSP + + ++A+WAL N+A +
Sbjct: 71 LQ-EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 129
Query: 191 CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR-GKPQPLFEQTRPALPALERL 249
V+ GAL P L Q +L+ A W LSN G Q + AL LE+L
Sbjct: 130 QIQAVIDAGAL-PALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQL 188
Query: 250 IHSNDDEVLTDACWALSYL 268
++++ +A AL L
Sbjct: 189 QSHENEKIQKEAQEALEKL 207
>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or329
Length = 252
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 74/284 (26%), Positives = 128/284 (45%), Gaps = 44/284 (15%)
Query: 116 VPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVRE 175
V + ++ L+ D + Q EAA L IASG + + ++D G V + V+LL+S +V++
Sbjct: 4 VEKLVKLLTSTD-SETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQK 62
Query: 176 QAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPL 235
+A AL N+A + ++ G + L+
Sbjct: 63 EAARALANIASGPDEAIKAIVDAGGVEVLV------------------------------ 92
Query: 236 FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP 295
+L+ S D EV +A AL+ ++ G ++ I+A+++AG LV+LL
Sbjct: 93 ------------KLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTST 140
Query: 296 SPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 355
V A R + NI +G D + I++ + L+ LLT + ++KEA ++NI +
Sbjct: 141 DSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLT-STDSEVQKEAARALANIAS 199
Query: 356 GNVNXXXXXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGG 399
G + L LL + + E++KEA A+ N SGG
Sbjct: 200 GPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGG 243
>pdb|1OYZ|A Chain A, X-Ray Structure Of Yiba_ecoli Northeast Structural
Genomics Consortium Target Et31
Length = 280
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 58/148 (39%), Gaps = 22/148 (14%)
Query: 130 QLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP 189
Q Q A TN+ T+ V+ D +P+ + LL P DVR A +A+ D+
Sbjct: 132 QSQITAFDKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAININKYDNS 191
Query: 190 KCRDLVLSNGALMPLLAQFNEHAKLSML-----RNATWTLSNFCRG-KPQPLFEQTRPA- 242
RD + L NE ++ + R LS C K +++ A
Sbjct: 192 DIRD------CFVEXLQDKNEEVRIEAIIGLSYRKDKRVLSVLCDELKKNTVYDDIIEAA 245
Query: 243 --------LPALERLIHSNDD-EVLTDA 261
LP L+ ++ DD E++T A
Sbjct: 246 GELGDKTLLPVLDTXLYKFDDNEIITSA 273
>pdb|2DB0|A Chain A, Crystal Structure Of Ph0542
pdb|2DB0|B Chain B, Crystal Structure Of Ph0542
Length = 253
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 51/113 (45%), Gaps = 15/113 (13%)
Query: 179 WALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQ 238
+AL +A +P ++ + M +L+ N KL+ L NF + F+
Sbjct: 129 YALEEIAKANPMLMASIVRD--FMSMLSSKNREDKLTAL--------NFIEAMGENSFKY 178
Query: 239 TRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL 291
P LP + L+H D+ V A AL +L+ NDK++ V V RL EL
Sbjct: 179 VNPFLPRIINLLHDGDEIVRASAVEALVHLA-TLNDKLRKV----VIKRLEEL 226
>pdb|1M5N|S Chain S, Crystal Structure Of Heat Repeats (1-11) Of Importin B
Bound To The Non-Classical Nls(67-94) Of Pthrp
Length = 485
Score = 35.8 bits (81), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 55/126 (43%), Gaps = 9/126 (7%)
Query: 153 VIDHGAVPIFVRLLSSPTDDVREQAVWALGNV-AGDSP-KCRDLVLSNGALMPLLAQFNE 210
++ H +P + +P R+ AV A G + G P + + LV+ MP L + +
Sbjct: 363 IVPH-VLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQA---MPTLIELMK 418
Query: 211 HAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH--SNDDEVLTDACWALSYL 268
+ + A WT+ C P+ A P L+ LI S + V ++ CWA S L
Sbjct: 419 DPSVVVRDTAAWTVGRICELLPEAAINDVYLA-PLLQCLIEGLSAEPRVASNVCWAFSSL 477
Query: 269 SDGTND 274
++ +
Sbjct: 478 AEAAYE 483
Score = 28.1 bits (61), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
Query: 286 PRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKS--IK 343
P L+EL++ PS V A TVG I ++ + IN L LL L + +
Sbjct: 411 PTLIELMKDPSVVVRDTAAWTVGRIC---ELLPEAAINDVYLAPLLQCLIEGLSAEPRVA 467
Query: 344 KEACWTISNI 353
CW S++
Sbjct: 468 SNVCWAFSSL 477
>pdb|2BPT|A Chain A, Structure Of The Nup1p:kap95p Complex
pdb|2BKU|B Chain B, Kap95p:rangtp Complex
pdb|2BKU|D Chain D, Kap95p:rangtp Complex
pdb|3EA5|B Chain B, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|D Chain D, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 861
Score = 35.8 bits (81), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 47/114 (41%), Gaps = 8/114 (7%)
Query: 135 AAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDL 194
A A +I G + R H A+P + L++ + V+E W +G +A + D
Sbjct: 389 AVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDP 448
Query: 195 VLS-NGALMPLLAQFNEHAKLSMLRNATWTLSN----FCRGKPQPLFEQTRPAL 243
G + L +H K++ N +WT+ N P P++ PAL
Sbjct: 449 QQHLPGVVQACLIGLQDHPKVA--TNCSWTIINLVEQLAEATPSPIY-NFYPAL 499
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 303 ALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNI 353
A+ G+I+ G D + HQALP +L+L+ + +K+ W I I
Sbjct: 389 AVMAFGSIMDGPDKVQRTYYVHQALPSILNLMN-DQSLQVKETTAWCIGRI 438
>pdb|3ND2|A Chain A, Structure Of Yeast Importin-Beta (Kap95p)
Length = 861
Score = 35.8 bits (81), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 47/114 (41%), Gaps = 8/114 (7%)
Query: 135 AAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDL 194
A A +I G + R H A+P + L++ + V+E W +G +A + D
Sbjct: 389 AVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDP 448
Query: 195 VLS-NGALMPLLAQFNEHAKLSMLRNATWTLSN----FCRGKPQPLFEQTRPAL 243
G + L +H K++ N +WT+ N P P++ PAL
Sbjct: 449 QQHLPGVVQACLIGLQDHPKVA--TNCSWTIINLVEQLAEATPSPIY-NFYPAL 499
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 303 ALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNI 353
A+ G+I+ G D + HQALP +L+L+ + +K+ W I I
Sbjct: 389 AVMAFGSIMDGPDKVQRTYYVHQALPSILNLMN-DQSLQVKETTAWCIGRI 438
>pdb|1QGK|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha
pdb|1QGR|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha (Ii Crystal Form, Grown At Low Ph)
Length = 876
Score = 35.4 bits (80), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 9/123 (7%)
Query: 153 VIDHGAVPIFVRLLSSPTDDVREQAVWALGNV-AGDSP-KCRDLVLSNGALMPLLAQFNE 210
++ H +P + +P R+ AV A G + G P + + LV+ MP L + +
Sbjct: 363 IVPH-VLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQA---MPTLIELMK 418
Query: 211 HAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH--SNDDEVLTDACWALSYL 268
+ + A WT+ C P+ A P L+ LI S + V ++ CWA S L
Sbjct: 419 DPSVVVRDTAAWTVGRICELLPEAAINDVYLA-PLLQCLIEGLSAEPRVASNVCWAFSSL 477
Query: 269 SDG 271
++
Sbjct: 478 AEA 480
Score = 28.1 bits (61), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
Query: 286 PRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKS--IK 343
P L+EL++ PS V A TVG I ++ + IN L LL L + +
Sbjct: 411 PTLIELMKDPSVVVRDTAAWTVGRIC---ELLPEAAINDVYLAPLLQCLIEGLSAEPRVA 467
Query: 344 KEACWTISNI 353
CW S++
Sbjct: 468 SNVCWAFSSL 477
>pdb|2P8Q|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb- Domain
pdb|2Q5D|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|2Q5D|B Chain B, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|3LWW|A Chain A, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
pdb|3LWW|C Chain C, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
Length = 876
Score = 35.4 bits (80), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 9/123 (7%)
Query: 153 VIDHGAVPIFVRLLSSPTDDVREQAVWALGNV-AGDSP-KCRDLVLSNGALMPLLAQFNE 210
++ H +P + +P R+ AV A G + G P + + LV+ MP L + +
Sbjct: 363 IVPH-VLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQA---MPTLIELMK 418
Query: 211 HAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH--SNDDEVLTDACWALSYL 268
+ + A WT+ C P+ A P L+ LI S + V ++ CWA S L
Sbjct: 419 DPSVVVRDTAAWTVGRICELLPEAAINDVYLA-PLLQCLIEGLSAEPRVASNVCWAFSSL 477
Query: 269 SDG 271
++
Sbjct: 478 AEA 480
Score = 28.1 bits (61), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
Query: 286 PRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKS--IK 343
P L+EL++ PS V A TVG I ++ + IN L LL L + +
Sbjct: 411 PTLIELMKDPSVVVRDTAAWTVGRIC---ELLPEAAINDVYLAPLLQCLIEGLSAEPRVA 467
Query: 344 KEACWTISNI 353
CW S++
Sbjct: 468 SNVCWAFSSL 477
>pdb|2QNA|A Chain A, Crystal Structure Of Human Importin-Beta (127-876) In
Complex With The Ibb-Domain Of Snurportin1 (1-65)
Length = 762
Score = 35.0 bits (79), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 9/123 (7%)
Query: 153 VIDHGAVPIFVRLLSSPTDDVREQAVWALGNV-AGDSP-KCRDLVLSNGALMPLLAQFNE 210
++ H +P + +P R+ AV A G + G P + + LV+ MP L + +
Sbjct: 238 IVPH-VLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQA---MPTLIELMK 293
Query: 211 HAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH--SNDDEVLTDACWALSYL 268
+ + A WT+ C P+ A P L+ LI S + V ++ CWA S L
Sbjct: 294 DPSVVVRDTAAWTVGRICELLPEAAINDVYLA-PLLQCLIEGLSAEPRVASNVCWAFSSL 352
Query: 269 SDG 271
++
Sbjct: 353 AEA 355
Score = 28.1 bits (61), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
Query: 286 PRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKS--IK 343
P L+EL++ PS V A TVG I ++ + IN L LL L + +
Sbjct: 286 PTLIELMKDPSVVVRDTAAWTVGRIC---ELLPEAAINDVYLAPLLQCLIEGLSAEPRVA 342
Query: 344 KEACWTISNI 353
CW S++
Sbjct: 343 SNVCWAFSSL 352
>pdb|4AH7|A Chain A, Structure Of Wild Type Stapylococcus Aureus
N-acetylneuraminic Acid Lyase In Complex With Pyruvate
pdb|4AH7|B Chain B, Structure Of Wild Type Stapylococcus Aureus
N-acetylneuraminic Acid Lyase In Complex With Pyruvate
pdb|4AH7|C Chain C, Structure Of Wild Type Stapylococcus Aureus
N-acetylneuraminic Acid Lyase In Complex With Pyruvate
pdb|4AH7|D Chain D, Structure Of Wild Type Stapylococcus Aureus
N-acetylneuraminic Acid Lyase In Complex With Pyruvate
pdb|4AMA|A Chain A, Crystal Structure Of N-acetylneuraminic Acid Lyase From
Staphylococcus Aureus With The Chemical Modification
Thia- Lysine At Position 165 In Complex With Pyruvate
pdb|4AMA|B Chain B, Crystal Structure Of N-acetylneuraminic Acid Lyase From
Staphylococcus Aureus With The Chemical Modification
Thia- Lysine At Position 165 In Complex With Pyruvate
pdb|4AMA|C Chain C, Crystal Structure Of N-acetylneuraminic Acid Lyase From
Staphylococcus Aureus With The Chemical Modification
Thia- Lysine At Position 165 In Complex With Pyruvate
pdb|4AMA|D Chain D, Crystal Structure Of N-acetylneuraminic Acid Lyase From
Staphylococcus Aureus With The Chemical Modification
Thia- Lysine At Position 165 In Complex With Pyruvate
Length = 298
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 48/129 (37%), Gaps = 39/129 (30%)
Query: 205 LAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLT----- 259
+ QF+E + +T NF L E+ R A P ++LI S DE+L
Sbjct: 154 IEQFSELFNHEKIVGVXYTAPNFF------LLERIRKAFP--DKLILSGFDEMLVQATIS 205
Query: 260 --DACWALSYLSDG------------------------TNDKIQAVIEAGVCPRLVELLR 293
D +Y +G +ND I+ V+ G+ P L E+LR
Sbjct: 206 GVDGAIGSTYNVNGRRARKIFDLARQGQIQEAYQLQHDSNDIIETVLSMGIYPTLKEILR 265
Query: 294 HPSPSVLIP 302
H +P
Sbjct: 266 HRGIDAGLP 274
>pdb|4AHO|A Chain A, Crystal Structure Of N-acetylneuraminic Acid Lyase From
Staphylococcus Aureus With The Chemical Modification
Thia-lysine At Position 165
pdb|4AHO|B Chain B, Crystal Structure Of N-acetylneuraminic Acid Lyase From
Staphylococcus Aureus With The Chemical Modification
Thia-lysine At Position 165
pdb|4AHO|C Chain C, Crystal Structure Of N-acetylneuraminic Acid Lyase From
Staphylococcus Aureus With The Chemical Modification
Thia-lysine At Position 165
pdb|4AHO|D Chain D, Crystal Structure Of N-acetylneuraminic Acid Lyase From
Staphylococcus Aureus With The Chemical Modification
Thia-lysine At Position 165
Length = 299
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 48/129 (37%), Gaps = 39/129 (30%)
Query: 205 LAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLT----- 259
+ QF+E + +T NF L E+ R A P ++LI S DE+L
Sbjct: 155 IEQFSELFNHEKIVGVXYTAPNFF------LLERIRKAFP--DKLILSGFDEMLVQATIS 206
Query: 260 --DACWALSYLSDG------------------------TNDKIQAVIEAGVCPRLVELLR 293
D +Y +G +ND I+ V+ G+ P L E+LR
Sbjct: 207 GVDGAIGSTYNVNGRRARKIFDLARQGQIQEAYQLQHDSNDIIETVLSMGIYPTLKEILR 266
Query: 294 HPSPSVLIP 302
H +P
Sbjct: 267 HRGIDAGLP 275
>pdb|4AHP|A Chain A, Crystal Structure Of Wild Type N-acetylneuraminic Acid
Lyase From Staphylococcus Aureus
pdb|4AHP|B Chain B, Crystal Structure Of Wild Type N-acetylneuraminic Acid
Lyase From Staphylococcus Aureus
pdb|4AHP|C Chain C, Crystal Structure Of Wild Type N-acetylneuraminic Acid
Lyase From Staphylococcus Aureus
pdb|4AHP|D Chain D, Crystal Structure Of Wild Type N-acetylneuraminic Acid
Lyase From Staphylococcus Aureus
Length = 298
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 48/129 (37%), Gaps = 39/129 (30%)
Query: 205 LAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLT----- 259
+ QF+E + +T NF L E+ R A P ++LI S DE+L
Sbjct: 154 IEQFSELFNHEKIVGVKYTAPNFF------LLERIRKAFP--DKLILSGFDEMLVQATIS 205
Query: 260 --DACWALSYLSDG------------------------TNDKIQAVIEAGVCPRLVELLR 293
D +Y +G +ND I+ V+ G+ P L E+LR
Sbjct: 206 GVDGAIGSTYNVNGRRARKIFDLARQGQIQEAYQLQHDSNDIIETVLSMGIYPTLKEILR 265
Query: 294 HPSPSVLIP 302
H +P
Sbjct: 266 HRGIDAGLP 274
>pdb|4AHQ|A Chain A, Crystal Structure Of N-acetylneuraminic Acid Lyase Mutant
K165c From Staphylococcus Aureus
pdb|4AHQ|B Chain B, Crystal Structure Of N-acetylneuraminic Acid Lyase Mutant
K165c From Staphylococcus Aureus
pdb|4AHQ|C Chain C, Crystal Structure Of N-acetylneuraminic Acid Lyase Mutant
K165c From Staphylococcus Aureus
pdb|4AHQ|D Chain D, Crystal Structure Of N-acetylneuraminic Acid Lyase Mutant
K165c From Staphylococcus Aureus
Length = 298
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 48/129 (37%), Gaps = 39/129 (30%)
Query: 205 LAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLT----- 259
+ QF+E + +T NF L E+ R A P ++LI S DE+L
Sbjct: 154 IEQFSELFNHEKIVGVCYTAPNFF------LLERIRKAFP--DKLILSGFDEMLVQATIS 205
Query: 260 --DACWALSYLSDG------------------------TNDKIQAVIEAGVCPRLVELLR 293
D +Y +G +ND I+ V+ G+ P L E+LR
Sbjct: 206 GVDGAIGSTYNVNGRRARKIFDLARQGQIQEAYQLQHDSNDIIETVLSMGIYPTLKEILR 265
Query: 294 HPSPSVLIP 302
H +P
Sbjct: 266 HRGIDAGLP 274
>pdb|1LUJ|A Chain A, Crystal Structure Of The Beta-CateninICAT COMPLEX
Length = 514
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 40/96 (41%), Gaps = 20/96 (20%)
Query: 112 QSGVVPRFIEFLSRDD----------FPQLQFEAAWALTNIASGTSE---------NTRV 152
+ G +PR ++ L R Q QF + I G + + R+
Sbjct: 380 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 439
Query: 153 VI-DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGD 187
VI +P+FV+LL SP ++++ A L +A D
Sbjct: 440 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 475
>pdb|1G3J|A Chain A, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo
Repeat Complex
pdb|1G3J|C Chain C, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo
Repeat Complex
pdb|1TH1|A Chain A, Beta-Catenin In Complex With A Phosphorylated Apc 20aa
Repeat Fragment
pdb|1TH1|B Chain B, Beta-Catenin In Complex With A Phosphorylated Apc 20aa
Repeat Fragment
Length = 532
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 40/96 (41%), Gaps = 20/96 (20%)
Query: 112 QSGVVPRFIEFLSRDD----------FPQLQFEAAWALTNIASGTSE---------NTRV 152
+ G +PR ++ L R Q QF + I G + + R+
Sbjct: 397 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 456
Query: 153 VI-DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGD 187
VI +P+FV+LL SP ++++ A L +A D
Sbjct: 457 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 492
>pdb|1T08|A Chain A, Crystal Structure Of Beta-CateninICAT HELICAL
DomainUNPHOSPHORYLATED APC R3
Length = 519
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 40/96 (41%), Gaps = 20/96 (20%)
Query: 112 QSGVVPRFIEFLSRDD----------FPQLQFEAAWALTNIASGTSE---------NTRV 152
+ G +PR ++ L R Q QF + I G + + R+
Sbjct: 384 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 443
Query: 153 VI-DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGD 187
VI +P+FV+LL SP ++++ A L +A D
Sbjct: 444 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 479
>pdb|2BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin
Length = 516
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 40/96 (41%), Gaps = 20/96 (20%)
Query: 112 QSGVVPRFIEFLSRDD----------FPQLQFEAAWALTNIASGTSE---------NTRV 152
+ G +PR ++ L R Q QF + I G + + R+
Sbjct: 380 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 439
Query: 153 VI-DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGD 187
VI +P+FV+LL SP ++++ A L +A D
Sbjct: 440 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 475
>pdb|2GL7|A Chain A, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX
pdb|2GL7|D Chain D, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX
Length = 550
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 40/96 (41%), Gaps = 20/96 (20%)
Query: 112 QSGVVPRFIEFLSRDD----------FPQLQFEAAWALTNIASGTSE---------NTRV 152
+ G +PR ++ L R Q QF + I G + + R+
Sbjct: 393 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 452
Query: 153 VI-DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGD 187
VI +P+FV+LL SP ++++ A L +A D
Sbjct: 453 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 488
>pdb|1QZ7|A Chain A, Beta-Catenin Binding Domain Of Axin In Complex With Beta-
Catenin
Length = 533
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 40/96 (41%), Gaps = 20/96 (20%)
Query: 112 QSGVVPRFIEFLSRDD----------FPQLQFEAAWALTNIASGTSE---------NTRV 152
+ G +PR ++ L R Q QF + I G + + R+
Sbjct: 397 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 456
Query: 153 VI-DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGD 187
VI +P+FV+LL SP ++++ A L +A D
Sbjct: 457 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 492
>pdb|3IFQ|A Chain A, Interction Of Plakoglobin And Beta-Catenin With Desmosomal
Cadherins
pdb|3IFQ|B Chain B, Interction Of Plakoglobin And Beta-Catenin With Desmosomal
Cadherins
Length = 553
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 63/266 (23%), Positives = 109/266 (40%), Gaps = 34/266 (12%)
Query: 148 ENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLV-LSNG--ALMPL 204
E + G +P VR+LSSP + V A+ L N+ + V L++G ++PL
Sbjct: 94 EGLLAIFKSGGIPALVRMLSSPVESVLFYAITTLHNLLLYQEGAKMAVRLADGLQKMVPL 153
Query: 205 LAQFN--------EHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDE 256
L + N + +L N L G PQ L + R + + ++
Sbjct: 154 LNKNNPKFLAITTDCLQLLAYGNQESKLIILANGGPQALVQIMR----------NYSYEK 203
Query: 257 VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM 316
+L L LS ++K A++EAG L + L SP ++ L T+ N+ D+
Sbjct: 204 LLWTTSRVLKVLSVCPSNK-PAIVEAGGMQALGKHLTSNSPRLVQNCLWTLRNL---SDV 259
Query: 317 QTQCIINHQALPCLLDLLTQNYK---KSIKKEACWTISNITAGNVNXXXXXXXXXXXXPL 373
T+ + L +L +L ++ A T+SN+T N L
Sbjct: 260 ATK----QEGLESVLKILVNQLSVDDVNVLTCATGTLSNLTCNNSKNKTLVTQNSGVEAL 315
Query: 374 VNLLLNA--EFEIKKEAAWAISNATS 397
++ +L A + +I + A A+ + TS
Sbjct: 316 IHAILRAGDKDDITEPAVCALRHLTS 341
Score = 28.1 bits (61), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 159 VPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLL 205
+P+FV+LL S ++++ A L +A D + D + + GA PL+
Sbjct: 463 IPLFVQLLYSSVENIQRVAAGVLCELAQDK-EAADAIDAEGASAPLM 508
>pdb|4DJS|A Chain A, Structure Of Beta-Catenin In Complex With A Stapled
Peptide Inhibitor
Length = 518
Score = 32.3 bits (72), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 40/96 (41%), Gaps = 20/96 (20%)
Query: 112 QSGVVPRFIEFLSRDD----------FPQLQFEAAWALTNIASGTSE---------NTRV 152
+ G +PR ++ L R Q QF + I G + + R+
Sbjct: 382 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 441
Query: 153 VI-DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGD 187
VI +P+FV+LL SP ++++ A L +A D
Sbjct: 442 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 477
>pdb|1I7X|A Chain A, Beta-CateninE-Cadherin Complex
pdb|1I7X|C Chain C, Beta-CateninE-Cadherin Complex
pdb|1I7W|A Chain A, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
pdb|1I7W|C Chain C, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
pdb|1JPP|A Chain A, The Structure Of A Beta-Catenin Binding Repeat From
Adenomatous Polyposis Coli (Apc) In Complex With
Beta-Catenin
pdb|1JPP|B Chain B, The Structure Of A Beta-Catenin Binding Repeat From
Adenomatous Polyposis Coli (Apc) In Complex With
Beta-Catenin
pdb|1M1E|A Chain A, Beta-Catenin Armadillo Repeat Domain Bound To Icat
pdb|1V18|A Chain A, The Crystal Structure Of Beta-Catenin Armadillo Repeat
Complexed With A Phosphorylated Apc 20mer Repeat
Length = 538
Score = 32.3 bits (72), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 40/96 (41%), Gaps = 20/96 (20%)
Query: 112 QSGVVPRFIEFLSRDD----------FPQLQFEAAWALTNIASGTSE---------NTRV 152
+ G +PR ++ L R Q QF + I G + + R+
Sbjct: 396 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 455
Query: 153 VI-DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGD 187
VI +P+FV+LL SP ++++ A L +A D
Sbjct: 456 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 491
>pdb|1JPW|A Chain A, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
pdb|1JPW|B Chain B, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
pdb|1JPW|C Chain C, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
Length = 540
Score = 32.3 bits (72), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 40/96 (41%), Gaps = 20/96 (20%)
Query: 112 QSGVVPRFIEFLSRDD----------FPQLQFEAAWALTNIASGTSE---------NTRV 152
+ G +PR ++ L R Q QF + I G + + R+
Sbjct: 399 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 458
Query: 153 VI-DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGD 187
VI +P+FV+LL SP ++++ A L +A D
Sbjct: 459 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 494
>pdb|3TX7|A Chain A, Crystal Structure Of Lrh-1BETA-Catenin Complex
Length = 527
Score = 32.3 bits (72), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 40/96 (41%), Gaps = 20/96 (20%)
Query: 112 QSGVVPRFIEFLSRDD----------FPQLQFEAAWALTNIASGTSE---------NTRV 152
+ G +PR ++ L R Q QF + I G + + R+
Sbjct: 393 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 452
Query: 153 VI-DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGD 187
VI +P+FV+LL SP ++++ A L +A D
Sbjct: 453 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 488
>pdb|3OUW|A Chain A, Structure Of Beta-Catenin With Lef-1
pdb|3OUX|A Chain A, Structure Of Beta-Catenin With Phosphorylated Lef-1
Length = 540
Score = 32.3 bits (72), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 40/96 (41%), Gaps = 20/96 (20%)
Query: 112 QSGVVPRFIEFLSRDD----------FPQLQFEAAWALTNIASGTSE---------NTRV 152
+ G +PR ++ L R Q QF + I G + + R+
Sbjct: 398 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 457
Query: 153 VI-DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGD 187
VI +P+FV+LL SP ++++ A L +A D
Sbjct: 458 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 493
>pdb|1JDH|A Chain A, Crystal Structure Of Beta-Catenin And Htcf-4
Length = 529
Score = 32.3 bits (72), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 40/96 (41%), Gaps = 20/96 (20%)
Query: 112 QSGVVPRFIEFLSRDD----------FPQLQFEAAWALTNIASGTSE---------NTRV 152
+ G +PR ++ L R Q QF + I G + + R+
Sbjct: 395 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 454
Query: 153 VI-DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGD 187
VI +P+FV+LL SP ++++ A L +A D
Sbjct: 455 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 490
>pdb|2Z6H|A Chain A, Crystal Structure Of Beta-Catenin Armadillo Repeat Region
And Its C-Terminal Domain
Length = 644
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 40/96 (41%), Gaps = 20/96 (20%)
Query: 112 QSGVVPRFIEFLSRDD----------FPQLQFEAAWALTNIASGTSE---------NTRV 152
+ G +PR ++ L R Q QF + I G + + R+
Sbjct: 392 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 451
Query: 153 VI-DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGD 187
VI +P+FV+LL SP ++++ A L +A D
Sbjct: 452 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 487
>pdb|3BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin
Length = 470
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 20/96 (20%)
Query: 112 QSGVVPRFIEFLSRDD----------FPQLQFEAAWALTNIASGTSE---------NTRV 152
+ G +PR ++ L R Q QF I G + + R+
Sbjct: 337 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRXEEIVEGCTGALHILARDVHNRI 396
Query: 153 VI-DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGD 187
VI +P+FV+LL SP ++++ A L +A D
Sbjct: 397 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 432
>pdb|3NMZ|A Chain A, Crytal Structure Of Apc Complexed With Asef
pdb|3NMZ|B Chain B, Crytal Structure Of Apc Complexed With Asef
Length = 458
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 68/291 (23%), Positives = 113/291 (38%), Gaps = 46/291 (15%)
Query: 123 LSRDDFP-QLQFEAAWALTNIASGTSENTRVVID-HGAVPIFVRLLSSPTDDVREQAVWA 180
L+ D + L+ A ALTN+ G N + G + V L S ++D+++
Sbjct: 207 LTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASV 266
Query: 181 LGNVAG----DSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLF 236
L N++ +S K V S ALM + + + L + +A W LS C
Sbjct: 267 LRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHC-------- 318
Query: 237 EQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPS 296
+ + + A+ D L L+Y S TN A+IE+G
Sbjct: 319 TENKADICAV--------DGALAFLVGTLTYRSQ-TN--TLAIIESGG------------ 355
Query: 297 PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG 356
LR V +++ ++ Q + + L LL L +++ +I AC T+ N++A
Sbjct: 356 -----GILRNVSSLIATNEDHRQILRENNCLQTLLQHL-KSHSLTIVSNACGTLWNLSAR 409
Query: 357 NVNXXXXXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKYK 407
N L NL+ + I +A A+ N +N KYK
Sbjct: 410 NPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLM---ANRPAKYK 457
>pdb|2Z6G|A Chain A, Crystal Structure Of A Full-Length Zebrafish Beta-Catenin
Length = 780
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 20/96 (20%)
Query: 112 QSGVVPRFIEFLSRDD----------FPQLQF----------EAAWALTNIASGTSENTR 151
+ G +PR ++ L R Q QF EA +I + N
Sbjct: 528 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRI 587
Query: 152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGD 187
V+ +P+FV+LL SP ++++ A L +A D
Sbjct: 588 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 623
>pdb|1UKL|A Chain A, Crystal Structure Of Importin-Beta And Srebp-2 Complex
pdb|1UKL|B Chain B, Crystal Structure Of Importin-Beta And Srebp-2 Complex
Length = 876
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 49/121 (40%), Gaps = 8/121 (6%)
Query: 112 QSGVVPRFIEFLSRD-DFPQLQFE--AAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS 168
+ +VP + F+ P ++ A A +I G N + A+P + L+
Sbjct: 360 EDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGSILEGPEPNQLKPLVIQAMPTLIELMKD 419
Query: 169 PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE--HAKLSMLRNATWTLSN 226
P+ VR+ W +G + P+ +++ L PLL E A+ + N W S+
Sbjct: 420 PSVVVRDTTAWTVGRICELLPEA---AINDVYLAPLLQCLIEGLSAEPRVASNVCWAFSS 476
Query: 227 F 227
Sbjct: 477 L 477
>pdb|3T7U|A Chain A, A New Crytal Structure Of Apc-Arm
pdb|3T7U|B Chain B, A New Crytal Structure Of Apc-Arm
Length = 378
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 68/291 (23%), Positives = 113/291 (38%), Gaps = 46/291 (15%)
Query: 123 LSRDDFP-QLQFEAAWALTNIASGTSENTRVVID-HGAVPIFVRLLSSPTDDVREQAVWA 180
L+ D + L+ A ALTN+ G N + G + V L S ++D+++
Sbjct: 91 LTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASV 150
Query: 181 LGNVAG----DSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLF 236
L N++ +S K V S ALM + + + L + +A W LS C
Sbjct: 151 LRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCT------- 203
Query: 237 EQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPS 296
+ + + A+ D L L+Y S TN A+IE+G
Sbjct: 204 -ENKADICAV--------DGALAFLVGTLTYRSQ-TN--TLAIIESGG------------ 239
Query: 297 PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG 356
LR V +++ ++ Q + + L LL L +++ +I AC T+ N++A
Sbjct: 240 -----GILRNVSSLIATNEDHRQILRENNCLQTLLQHL-KSHSLTIVSNACGTLWNLSAR 293
Query: 357 NVNXXXXXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKYK 407
N L NL+ + I +A A+ N +N KYK
Sbjct: 294 NPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLM---ANRPAKYK 341
>pdb|3IVY|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Cytochrome
P450 Cyp125, P212121 Crystal Form
pdb|3IW0|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Cytochrome
P450 Cyp125, C2221 Crystal Form
pdb|3IW1|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Cytochrome
P450 Cyp125 In Complex With Androstenedione
pdb|3IW2|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Cytochrome
P450 Cyp125 In Complex With Econazole
Length = 433
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 40/87 (45%), Gaps = 7/87 (8%)
Query: 91 ATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 150
A T+ + I R + ++GV+PRF ++R+D +F + N+ +
Sbjct: 72 AITKLNDVKEISRHSDVFSSYENGVIPRFKNDIAREDIEVQRF----VMLNMDAPHHTRL 127
Query: 151 RVVIDHGAVPIFVRLLSSPTDDVREQA 177
R +I G P R + D+++E+A
Sbjct: 128 RKIISRGFTP---RAVGRLHDELQERA 151
>pdb|2X5W|A Chain A, X-Ray Structure Of Mycobacterium Tuberculosis Cytochrome
P450 Cyp125 In Complex With Substrate Cholest-4-En-3-One
Length = 440
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 40/87 (45%), Gaps = 7/87 (8%)
Query: 91 ATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 150
A T+ + I R + ++GV+PRF ++R+D +F + N+ +
Sbjct: 79 AITKLNDVKEISRHSDVFSSYENGVIPRFKNDIAREDIEVQRF----VMLNMDAPHHTRL 134
Query: 151 RVVIDHGAVPIFVRLLSSPTDDVREQA 177
R +I G P R + D+++E+A
Sbjct: 135 RKIISRGFTP---RAVGRLHDELQERA 158
>pdb|2XN8|A Chain A, X-Ray Structure Of The Substrate-Free Mycobacterium
Tuberculosis Cytochrome P450 Cyp125
Length = 423
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 40/87 (45%), Gaps = 7/87 (8%)
Query: 91 ATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 150
A T+ + I R + ++GV+PRF ++R+D +F + N+ +
Sbjct: 62 AITKLNDVKEISRHSDVFSSYENGVIPRFKNDIAREDIEVQRF----VMLNMDAPHHTRL 117
Query: 151 RVVIDHGAVPIFVRLLSSPTDDVREQA 177
R +I G P R + D+++E+A
Sbjct: 118 RKIISRGFTP---RAVGRLHDELQERA 141
>pdb|2XC3|A Chain A, X-Ray Structure Of Mycobacterium Tuberculosis Cyp125 Bound
To The Reverse Type I Inhibitor
Length = 424
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 40/87 (45%), Gaps = 7/87 (8%)
Query: 91 ATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 150
A T+ + I R + ++GV+PRF ++R+D +F + N+ +
Sbjct: 63 AITKLNDVKEISRHSDVFSSYENGVIPRFKNDIAREDIEVQRF----VMLNMDAPHHTRL 118
Query: 151 RVVIDHGAVPIFVRLLSSPTDDVREQA 177
R +I G P R + D+++E+A
Sbjct: 119 RKIISRGFTP---RAVGRLHDELQERA 142
>pdb|2X5L|A Chain A, X-Ray Structure Of The Substrate-Free Mycobacterium
Tuberculosis Cytochrome P450 Cyp125, Alternative Crystal
Form
Length = 431
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 40/87 (45%), Gaps = 7/87 (8%)
Query: 91 ATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 150
A T+ + I R + ++GV+PRF ++R+D +F + N+ +
Sbjct: 70 AITKLNDVKEISRHSDVFSSYENGVIPRFKNDIAREDIEVQRF----VMLNMDAPHHTRL 125
Query: 151 RVVIDHGAVPIFVRLLSSPTDDVREQA 177
R +I G P R + D+++E+A
Sbjct: 126 RKIISRGFTP---RAVGRLHDELQERA 149
>pdb|3NMX|A Chain A, Crystal Structure Of Apc Complexed With Asef
pdb|3NMX|B Chain B, Crystal Structure Of Apc Complexed With Asef
pdb|3NMX|C Chain C, Crystal Structure Of Apc Complexed With Asef
Length = 354
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 68/291 (23%), Positives = 113/291 (38%), Gaps = 46/291 (15%)
Query: 123 LSRDDFP-QLQFEAAWALTNIASGTSENTRVVID-HGAVPIFVRLLSSPTDDVREQAVWA 180
L+ D + L+ A ALTN+ G N + G + V L S ++D+++
Sbjct: 91 LTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASV 150
Query: 181 LGNVAG----DSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLF 236
L N++ +S K V S ALM + + + L + +A W LS C
Sbjct: 151 LRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHC-------- 202
Query: 237 EQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPS 296
+ + + A+ D L L+Y S TN A+IE+G
Sbjct: 203 TENKADICAV--------DGALAFLVGTLTYRSQ-TN--TLAIIESGG------------ 239
Query: 297 PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG 356
LR V +++ ++ Q + + L LL L +++ +I AC T+ N++A
Sbjct: 240 -----GILRNVSSLIATNEDHRQILRENNCLQTLLQHL-KSHSLTIVSNACGTLWNLSAR 293
Query: 357 NVNXXXXXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKYK 407
N L NL+ + I +A A+ N +N KYK
Sbjct: 294 NPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLM---ANRPAKYK 341
>pdb|3QHE|A Chain A, Crystal Structure Of The Complex Between The Armadillo
Repeat Domain Of Adenomatous Polyposis Coli And The
Tyrosine-Rich Domain Of Sam68
pdb|3QHE|C Chain C, Crystal Structure Of The Complex Between The Armadillo
Repeat Domain Of Adenomatous Polyposis Coli And The
Tyrosine-Rich Domain Of Sam68
Length = 337
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 49/112 (43%), Gaps = 6/112 (5%)
Query: 123 LSRDDFP-QLQFEAAWALTNIASGTSENTRVVID-HGAVPIFVRLLSSPTDDVREQAVWA 180
L+ D + L+ A ALTN+ G N + G + V L S ++D+++
Sbjct: 93 LTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASV 152
Query: 181 LGNVAG----DSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC 228
L N++ +S K V S ALM + + + L + +A W LS C
Sbjct: 153 LRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHC 204
>pdb|2CVO|A Chain A, Crystal Structure Of Putative N-Acetyl-Gamma-Glutamyl-
Phosphate Reductase (Ak071544) From Rice (Oryza Sativa)
pdb|2CVO|B Chain B, Crystal Structure Of Putative N-Acetyl-Gamma-Glutamyl-
Phosphate Reductase (Ak071544) From Rice (Oryza Sativa)
pdb|2CVO|C Chain C, Crystal Structure Of Putative N-Acetyl-Gamma-Glutamyl-
Phosphate Reductase (Ak071544) From Rice (Oryza Sativa)
pdb|2CVO|D Chain D, Crystal Structure Of Putative N-Acetyl-Gamma-Glutamyl-
Phosphate Reductase (Ak071544) From Rice (Oryza Sativa)
Length = 366
Score = 28.1 bits (61), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 129 PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRL 165
P+LQ EA + LT + N R+V + G P ++L
Sbjct: 141 PELQQEAVYGLTEVLRNEIRNARLVANPGCYPTSIQL 177
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.132 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,115,155
Number of Sequences: 62578
Number of extensions: 421312
Number of successful extensions: 1980
Number of sequences better than 100.0: 82
Number of HSP's better than 100.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 1168
Number of HSP's gapped (non-prelim): 177
length of query: 415
length of database: 14,973,337
effective HSP length: 101
effective length of query: 314
effective length of database: 8,652,959
effective search space: 2717029126
effective search space used: 2717029126
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)