Query 014945
Match_columns 415
No_of_seqs 345 out of 2072
Neff 10.6
Searched_HMMs 46136
Date Fri Mar 29 01:36:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014945.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014945hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5064 SRP1 Karyopherin (impo 100.0 1.3E-76 2.8E-81 499.1 28.9 404 8-415 6-415 (526)
2 KOG0166 Karyopherin (importin) 100.0 4.3E-73 9.3E-78 514.3 39.3 401 10-415 6-408 (514)
3 KOG0166 Karyopherin (importin) 100.0 1E-45 2.2E-50 336.1 28.5 326 71-400 109-439 (514)
4 COG5064 SRP1 Karyopherin (impo 100.0 3.1E-45 6.6E-50 309.4 19.4 331 71-405 114-451 (526)
5 PLN03200 cellulose synthase-in 100.0 4.5E-37 9.7E-42 318.6 37.5 333 71-407 189-569 (2102)
6 PLN03200 cellulose synthase-in 100.0 2E-34 4.4E-39 299.1 38.0 336 71-414 404-780 (2102)
7 KOG4224 Armadillo repeat prote 100.0 8.8E-28 1.9E-32 205.6 24.9 323 69-400 165-496 (550)
8 KOG4224 Armadillo repeat prote 100.0 5.1E-28 1.1E-32 207.0 20.1 320 70-398 125-447 (550)
9 PF05804 KAP: Kinesin-associat 99.9 9.8E-21 2.1E-25 182.9 35.3 320 71-399 290-651 (708)
10 PF05804 KAP: Kinesin-associat 99.9 1.9E-19 4.2E-24 174.0 33.4 315 75-400 254-610 (708)
11 KOG0168 Putative ubiquitin fus 99.8 3.5E-17 7.7E-22 154.5 28.0 331 72-407 168-595 (1051)
12 KOG4199 Uncharacterized conser 99.8 9.6E-16 2.1E-20 130.8 26.7 311 81-398 117-445 (461)
13 KOG1048 Neural adherens juncti 99.8 4E-16 8.8E-21 147.8 24.2 321 71-397 233-684 (717)
14 PF10508 Proteasom_PSMB: Prote 99.8 2.1E-15 4.5E-20 144.6 29.4 316 74-400 41-369 (503)
15 PF10508 Proteasom_PSMB: Prote 99.7 9.9E-15 2.2E-19 139.9 32.5 320 72-398 78-421 (503)
16 PRK09687 putative lyase; Provi 99.7 2.9E-15 6.3E-20 132.0 24.7 254 72-394 24-279 (280)
17 KOG4199 Uncharacterized conser 99.7 2.8E-14 6.1E-19 122.0 25.9 292 112-414 102-416 (461)
18 KOG2023 Nuclear transport rece 99.7 4.3E-16 9.3E-21 143.7 16.0 318 71-407 128-515 (885)
19 KOG2171 Karyopherin (importin) 99.7 5.3E-14 1.1E-18 138.3 29.6 329 73-407 120-514 (1075)
20 KOG1048 Neural adherens juncti 99.7 5.7E-15 1.2E-19 140.1 21.7 279 115-398 234-642 (717)
21 PRK09687 putative lyase; Provi 99.7 2.4E-14 5.1E-19 126.2 21.5 227 115-397 24-250 (280)
22 KOG2122 Beta-catenin-binding p 99.7 8.7E-14 1.9E-18 138.2 26.5 322 72-400 198-604 (2195)
23 KOG2122 Beta-catenin-binding p 99.6 2.3E-14 4.9E-19 142.2 20.9 265 90-357 317-603 (2195)
24 KOG4500 Rho/Rac GTPase guanine 99.6 2.2E-14 4.7E-19 126.5 17.5 309 84-397 55-390 (604)
25 KOG4500 Rho/Rac GTPase guanine 99.6 5.3E-13 1.1E-17 117.9 25.0 324 71-398 87-432 (604)
26 PF04826 Arm_2: Armadillo-like 99.6 1.2E-13 2.6E-18 118.9 20.2 196 111-313 9-206 (254)
27 cd00020 ARM Armadillo/beta-cat 99.6 2.8E-14 6.2E-19 110.5 14.7 118 279-397 3-120 (120)
28 KOG2171 Karyopherin (importin) 99.6 7.4E-13 1.6E-17 130.4 26.9 327 74-411 82-476 (1075)
29 PRK13800 putative oxidoreducta 99.6 1.4E-12 3E-17 134.0 28.2 259 72-394 622-896 (897)
30 cd00020 ARM Armadillo/beta-cat 99.6 6.2E-14 1.3E-18 108.6 13.9 119 109-229 2-120 (120)
31 PF04826 Arm_2: Armadillo-like 99.6 4.4E-13 9.5E-18 115.5 19.9 226 154-387 9-252 (254)
32 cd00256 VATPase_H VATPase_H, r 99.5 2.3E-11 5E-16 111.6 28.5 321 72-397 54-425 (429)
33 KOG2023 Nuclear transport rece 99.5 4.7E-13 1E-17 124.0 16.3 308 76-398 95-464 (885)
34 KOG1222 Kinesin associated pro 99.5 4.1E-11 9E-16 107.6 27.7 319 71-398 304-664 (791)
35 PF01749 IBB: Importin beta bi 99.5 1.1E-14 2.4E-19 105.7 1.9 88 6-93 3-96 (97)
36 KOG1293 Proteins containing ar 99.5 8E-11 1.7E-15 109.7 27.0 327 76-407 14-542 (678)
37 PF01602 Adaptin_N: Adaptin N 99.4 3.3E-11 7.1E-16 118.2 23.3 295 71-400 42-336 (526)
38 cd00256 VATPase_H VATPase_H, r 99.4 9.3E-11 2E-15 107.7 24.0 280 72-355 102-425 (429)
39 PTZ00429 beta-adaptin; Provisi 99.4 7.9E-10 1.7E-14 109.3 30.9 294 71-397 32-326 (746)
40 KOG1222 Kinesin associated pro 99.4 3E-10 6.4E-15 102.2 25.1 304 84-398 276-622 (791)
41 PRK13800 putative oxidoreducta 99.4 8.8E-11 1.9E-15 120.9 24.9 230 112-395 619-865 (897)
42 KOG0168 Putative ubiquitin fus 99.4 2.7E-10 6E-15 108.7 23.6 332 72-415 212-644 (1051)
43 KOG1241 Karyopherin (importin) 99.4 1E-10 2.2E-15 110.5 20.0 319 71-398 125-478 (859)
44 KOG2759 Vacuolar H+-ATPase V1 99.3 2.1E-10 4.5E-15 101.7 19.7 311 72-398 115-439 (442)
45 PF01602 Adaptin_N: Adaptin N 99.3 6.6E-10 1.4E-14 109.0 24.1 289 75-399 8-298 (526)
46 PTZ00429 beta-adaptin; Provisi 99.3 1.4E-08 3.1E-13 100.5 33.0 260 72-358 69-329 (746)
47 KOG1241 Karyopherin (importin) 99.3 3.2E-10 7E-15 107.2 19.5 323 73-402 174-535 (859)
48 KOG2160 Armadillo/beta-catenin 99.2 2.1E-09 4.6E-14 94.2 19.4 187 81-270 93-282 (342)
49 KOG2160 Armadillo/beta-catenin 99.2 5.2E-09 1.1E-13 91.8 19.7 183 129-312 97-282 (342)
50 KOG1293 Proteins containing ar 99.2 2.7E-09 6E-14 99.6 18.3 282 82-366 192-544 (678)
51 KOG0946 ER-Golgi vesicle-tethe 99.1 1.9E-07 4E-12 89.3 29.4 325 71-401 22-403 (970)
52 KOG0946 ER-Golgi vesicle-tethe 99.1 7.2E-08 1.6E-12 92.0 25.7 284 115-403 23-352 (970)
53 COG5215 KAP95 Karyopherin (imp 99.1 9.8E-09 2.1E-13 94.4 18.5 318 71-399 129-481 (858)
54 COG5215 KAP95 Karyopherin (imp 99.1 3E-08 6.4E-13 91.3 21.1 322 71-404 321-675 (858)
55 KOG1517 Guanine nucleotide bin 99.1 1.4E-08 3E-13 99.4 19.6 276 85-371 450-748 (1387)
56 PF03224 V-ATPase_H_N: V-ATPas 99.1 5.2E-09 1.1E-13 94.8 15.3 228 159-389 57-306 (312)
57 PF03224 V-ATPase_H_N: V-ATPas 99.0 1.2E-08 2.5E-13 92.6 14.6 214 75-293 62-293 (312)
58 KOG1059 Vesicle coat complex A 98.9 1.3E-06 2.7E-11 83.0 25.1 218 74-313 147-366 (877)
59 KOG1824 TATA-binding protein-i 98.9 3.6E-07 7.8E-12 89.0 21.6 310 75-398 9-362 (1233)
60 KOG3678 SARM protein (with ste 98.9 1.5E-07 3.3E-12 84.8 16.8 266 71-353 180-450 (832)
61 KOG0213 Splicing factor 3b, su 98.9 2.1E-07 4.5E-12 88.4 18.1 317 72-399 717-1067(1172)
62 KOG3678 SARM protein (with ste 98.9 2.3E-07 5E-12 83.7 17.3 275 107-398 173-453 (832)
63 KOG2759 Vacuolar H+-ATPase V1 98.8 7.9E-07 1.7E-11 79.5 19.9 263 76-356 161-439 (442)
64 KOG1062 Vesicle coat complex A 98.8 9.1E-06 2E-10 78.3 27.5 261 116-401 109-418 (866)
65 KOG1517 Guanine nucleotide bin 98.8 4.3E-07 9.3E-12 89.3 18.0 247 72-322 473-742 (1387)
66 COG5369 Uncharacterized conser 98.8 4E-08 8.7E-13 89.8 10.4 282 110-396 427-740 (743)
67 COG5181 HSH155 U2 snRNP splice 98.8 5.2E-07 1.1E-11 84.1 17.4 304 73-397 606-912 (975)
68 KOG2973 Uncharacterized conser 98.8 2.1E-06 4.6E-11 73.7 19.8 269 116-398 5-315 (353)
69 KOG1242 Protein containing ada 98.8 8.4E-06 1.8E-10 76.7 25.4 310 72-398 97-445 (569)
70 KOG0212 Uncharacterized conser 98.7 1.2E-06 2.7E-11 80.8 17.4 318 72-401 85-410 (675)
71 TIGR02270 conserved hypothetic 98.7 6.9E-06 1.5E-10 76.4 22.5 241 72-397 55-296 (410)
72 COG1413 FOG: HEAT repeat [Ener 98.7 1.4E-05 3.1E-10 73.6 23.5 250 72-398 44-305 (335)
73 KOG1062 Vesicle coat complex A 98.7 1E-05 2.2E-10 78.0 22.4 291 74-388 110-461 (866)
74 KOG0213 Splicing factor 3b, su 98.6 2.3E-06 5.1E-11 81.5 17.4 262 74-356 802-1066(1172)
75 KOG2973 Uncharacterized conser 98.6 1.7E-05 3.6E-10 68.3 20.9 271 72-355 4-314 (353)
76 COG5181 HSH155 U2 snRNP splice 98.6 5.1E-07 1.1E-11 84.1 12.4 237 158-400 605-873 (975)
77 KOG1059 Vesicle coat complex A 98.6 2.4E-05 5.2E-10 74.6 23.0 260 115-404 145-408 (877)
78 KOG1242 Protein containing ada 98.6 2.1E-05 4.5E-10 74.1 22.3 231 115-359 97-330 (569)
79 PF14664 RICTOR_N: Rapamycin-i 98.6 5.8E-06 1.3E-10 75.9 18.3 314 74-397 28-364 (371)
80 KOG1061 Vesicle coat complex A 98.6 1.9E-06 4.1E-11 82.8 15.3 303 73-399 123-455 (734)
81 KOG1824 TATA-binding protein-i 98.6 3.5E-06 7.6E-11 82.3 17.1 311 74-407 571-896 (1233)
82 KOG1789 Endocytosis protein RM 98.6 6.3E-05 1.4E-09 74.7 25.6 313 87-407 1741-2126(2235)
83 KOG4413 26S proteasome regulat 98.5 0.00027 5.8E-09 61.6 25.9 323 73-398 84-440 (524)
84 PF00514 Arm: Armadillo/beta-c 98.5 2.3E-07 4.9E-12 56.0 5.3 41 357-397 1-41 (41)
85 KOG1061 Vesicle coat complex A 98.5 4.7E-05 1E-09 73.5 23.3 306 71-402 49-384 (734)
86 KOG0212 Uncharacterized conser 98.5 2.1E-05 4.6E-10 72.9 20.2 303 74-398 170-481 (675)
87 KOG1789 Endocytosis protein RM 98.5 4.8E-05 1E-09 75.5 22.4 303 69-379 1769-2141(2235)
88 PF10165 Ric8: Guanine nucleot 98.4 7.1E-05 1.5E-09 71.0 22.3 256 105-361 13-343 (446)
89 COG5231 VMA13 Vacuolar H+-ATPa 98.4 1.8E-05 3.9E-10 68.3 16.2 261 121-397 156-428 (432)
90 KOG1060 Vesicle coat complex A 98.4 0.00023 5.1E-09 68.8 25.1 261 121-407 150-468 (968)
91 KOG4413 26S proteasome regulat 98.4 9E-05 2E-09 64.4 20.4 319 71-395 128-482 (524)
92 KOG1077 Vesicle coat complex A 98.4 0.00026 5.6E-09 67.7 24.4 313 73-411 76-413 (938)
93 PF00514 Arm: Armadillo/beta-c 98.4 4.7E-07 1E-11 54.6 4.5 40 146-185 1-40 (41)
94 PF13513 HEAT_EZ: HEAT-like re 98.4 5.5E-07 1.2E-11 58.4 5.0 55 340-395 1-55 (55)
95 KOG4646 Uncharacterized conser 98.4 7.5E-06 1.6E-10 61.5 11.1 126 69-198 14-140 (173)
96 TIGR02270 conserved hypothetic 98.4 0.00011 2.3E-09 68.6 21.1 209 73-355 88-296 (410)
97 COG1413 FOG: HEAT repeat [Ener 98.4 7.3E-05 1.6E-09 68.9 19.8 215 114-393 43-269 (335)
98 KOG1060 Vesicle coat complex A 98.3 0.00017 3.7E-09 69.7 20.7 251 74-355 38-316 (968)
99 KOG2259 Uncharacterized conser 98.3 4.2E-05 9.1E-10 72.3 16.2 219 159-396 200-474 (823)
100 KOG4646 Uncharacterized conser 98.3 8.7E-06 1.9E-10 61.1 9.4 116 113-231 15-130 (173)
101 PF05536 Neurochondrin: Neuroc 98.3 7.6E-05 1.6E-09 72.4 18.6 235 72-312 6-261 (543)
102 KOG1077 Vesicle coat complex A 98.2 0.0008 1.7E-08 64.5 23.6 301 73-397 113-433 (938)
103 PF12348 CLASP_N: CLASP N term 98.2 1.9E-05 4E-10 68.4 12.2 187 81-275 17-211 (228)
104 COG5369 Uncharacterized conser 98.2 2.6E-05 5.6E-10 72.0 12.8 201 175-377 407-617 (743)
105 KOG1240 Protein kinase contain 98.2 5.6E-05 1.2E-09 76.1 15.9 267 73-355 424-725 (1431)
106 PF13646 HEAT_2: HEAT repeats; 98.2 4.5E-06 9.8E-11 60.2 6.1 87 243-351 1-88 (88)
107 PF05536 Neurochondrin: Neuroc 98.2 0.00042 9E-09 67.4 21.0 238 158-398 6-262 (543)
108 KOG0915 Uncharacterized conser 98.2 8E-05 1.7E-09 76.7 16.5 315 74-402 821-1165(1702)
109 KOG0915 Uncharacterized conser 98.2 0.00038 8.3E-09 72.0 21.1 286 115-407 999-1316(1702)
110 KOG2062 26S proteasome regulat 98.2 7.4E-05 1.6E-09 71.6 15.1 242 115-400 414-656 (929)
111 PF13646 HEAT_2: HEAT repeats; 98.2 6.3E-06 1.4E-10 59.5 6.5 87 116-225 1-88 (88)
112 PF14664 RICTOR_N: Rapamycin-i 98.2 0.00056 1.2E-08 63.0 20.5 236 159-401 27-273 (371)
113 PF13513 HEAT_EZ: HEAT-like re 98.1 4.1E-06 8.9E-11 54.3 4.4 55 297-353 1-55 (55)
114 KOG2259 Uncharacterized conser 98.1 4.6E-05 1E-09 72.1 12.7 294 73-398 200-512 (823)
115 PF12348 CLASP_N: CLASP N term 98.1 2.7E-05 5.9E-10 67.4 10.7 190 167-363 17-214 (228)
116 KOG0567 HEAT repeat-containing 98.1 0.0012 2.6E-08 55.9 19.1 245 83-396 17-279 (289)
117 PF12460 MMS19_C: RNAPII trans 98.1 0.0029 6.3E-08 60.0 24.4 114 284-401 272-398 (415)
118 KOG0211 Protein phosphatase 2A 98.0 0.00034 7.3E-09 69.5 17.7 306 73-396 357-663 (759)
119 KOG2274 Predicted importin 9 [ 98.0 0.0021 4.6E-08 63.4 22.5 316 82-407 461-790 (1005)
120 KOG2734 Uncharacterized conser 98.0 0.0023 5.1E-08 58.1 20.7 224 69-293 123-371 (536)
121 COG5231 VMA13 Vacuolar H+-ATPa 98.0 0.00039 8.4E-09 60.4 15.2 256 84-355 162-428 (432)
122 KOG2734 Uncharacterized conser 98.0 0.0039 8.5E-08 56.7 21.8 229 104-335 115-371 (536)
123 KOG1240 Protein kinase contain 98.0 0.00063 1.4E-08 68.9 18.3 272 115-398 423-726 (1431)
124 COG5240 SEC21 Vesicle coat com 98.0 0.00065 1.4E-08 63.6 17.0 283 78-397 271-555 (898)
125 KOG1943 Beta-tubulin folding c 97.9 0.011 2.4E-07 59.8 25.6 312 72-396 342-704 (1133)
126 PF12755 Vac14_Fab1_bd: Vacuol 97.9 0.0001 2.3E-09 53.5 8.9 93 300-396 3-95 (97)
127 COG5096 Vesicle coat complex, 97.9 0.018 3.9E-07 57.2 26.5 141 72-230 56-196 (757)
128 COG5096 Vesicle coat complex, 97.9 0.00089 1.9E-08 66.1 17.1 164 213-398 33-196 (757)
129 KOG1078 Vesicle coat complex C 97.9 0.00088 1.9E-08 65.0 16.6 253 115-396 246-531 (865)
130 smart00185 ARM Armadillo/beta- 97.8 6.6E-05 1.4E-09 45.1 5.4 38 359-396 3-40 (41)
131 PF09759 Atx10homo_assoc: Spin 97.8 0.00013 2.8E-09 53.1 7.7 67 131-197 2-70 (102)
132 KOG2274 Predicted importin 9 [ 97.8 0.0036 7.8E-08 61.8 19.2 232 167-406 460-698 (1005)
133 KOG1991 Nuclear transport rece 97.8 0.0033 7.2E-08 62.7 18.9 282 114-401 410-715 (1010)
134 PF10165 Ric8: Guanine nucleot 97.8 0.004 8.6E-08 59.3 19.2 268 138-407 4-347 (446)
135 smart00185 ARM Armadillo/beta- 97.7 9E-05 1.9E-09 44.5 5.2 39 147-185 2-40 (41)
136 KOG0211 Protein phosphatase 2A 97.7 0.0033 7.1E-08 62.7 18.6 149 200-355 399-547 (759)
137 KOG1943 Beta-tubulin folding c 97.7 0.0044 9.4E-08 62.5 19.0 260 114-397 341-611 (1133)
138 KOG1248 Uncharacterized conser 97.7 0.0091 2E-07 61.0 21.1 230 169-407 666-908 (1176)
139 PF09759 Atx10homo_assoc: Spin 97.6 0.00045 9.8E-09 50.2 8.3 68 299-366 2-70 (102)
140 PF05004 IFRD: Interferon-rela 97.6 0.0059 1.3E-07 55.0 17.1 191 72-269 44-256 (309)
141 COG5116 RPN2 26S proteasome re 97.6 0.0028 6E-08 59.5 14.6 134 245-401 520-654 (926)
142 KOG1058 Vesicle coat complex C 97.6 0.037 8E-07 54.0 22.2 248 121-407 106-356 (948)
143 KOG1078 Vesicle coat complex C 97.6 0.0045 9.9E-08 60.3 16.2 260 74-355 248-532 (865)
144 KOG1248 Uncharacterized conser 97.5 0.016 3.5E-07 59.2 20.2 243 119-366 658-910 (1176)
145 PF12717 Cnd1: non-SMC mitotic 97.5 0.007 1.5E-07 50.0 15.2 93 213-313 1-93 (178)
146 KOG1991 Nuclear transport rece 97.5 0.028 6.1E-07 56.5 21.3 320 84-415 431-815 (1010)
147 KOG1967 DNA repair/transcripti 97.5 0.0008 1.7E-08 66.4 10.5 188 159-351 817-1020(1030)
148 PF05918 API5: Apoptosis inhib 97.5 0.032 6.9E-07 53.7 20.8 254 117-401 26-301 (556)
149 KOG1058 Vesicle coat complex C 97.5 0.019 4.1E-07 55.9 19.0 149 239-399 315-465 (948)
150 PF08569 Mo25: Mo25-like; Int 97.5 0.0065 1.4E-07 55.1 15.1 202 152-355 71-283 (335)
151 KOG4535 HEAT and armadillo rep 97.4 0.0033 7.1E-08 57.8 12.8 267 129-399 269-561 (728)
152 KOG0567 HEAT repeat-containing 97.4 0.041 9E-07 47.0 18.2 197 112-355 65-280 (289)
153 KOG4535 HEAT and armadillo rep 97.4 0.0014 3E-08 60.2 9.8 187 168-355 402-603 (728)
154 KOG0414 Chromosome condensatio 97.4 0.0034 7.3E-08 63.9 13.1 164 221-400 898-1067(1251)
155 PF05004 IFRD: Interferon-rela 97.4 0.021 4.6E-07 51.5 17.3 190 204-398 48-258 (309)
156 COG5240 SEC21 Vesicle coat com 97.3 0.0064 1.4E-07 57.3 13.7 250 72-354 304-554 (898)
157 PF12755 Vac14_Fab1_bd: Vacuol 97.3 0.0012 2.5E-08 48.1 7.2 91 217-309 3-93 (97)
158 PF11841 DUF3361: Domain of un 97.3 0.018 3.9E-07 45.6 13.7 126 191-317 3-136 (160)
159 KOG4151 Myosin assembly protei 97.3 0.013 2.9E-07 57.4 15.5 217 184-407 489-708 (748)
160 PF12717 Cnd1: non-SMC mitotic 97.3 0.019 4.2E-07 47.3 14.8 92 129-231 2-94 (178)
161 PF12460 MMS19_C: RNAPII trans 97.3 0.016 3.4E-07 55.0 16.1 207 158-375 190-413 (415)
162 KOG4653 Uncharacterized conser 97.2 0.013 2.8E-07 57.8 14.9 226 117-353 730-962 (982)
163 KOG2062 26S proteasome regulat 97.2 0.077 1.7E-06 51.8 19.2 225 117-383 452-680 (929)
164 KOG4653 Uncharacterized conser 97.2 0.015 3.4E-07 57.3 14.9 225 161-396 731-963 (982)
165 PF11841 DUF3361: Domain of un 97.2 0.022 4.7E-07 45.1 13.0 130 277-407 5-141 (160)
166 PF13764 E3_UbLigase_R4: E3 ub 97.2 0.29 6.3E-06 49.7 24.0 238 155-397 115-406 (802)
167 KOG4151 Myosin assembly protei 97.1 0.03 6.5E-07 55.0 16.2 245 142-393 489-737 (748)
168 PF08569 Mo25: Mo25-like; Int 97.1 0.041 8.9E-07 50.0 16.0 202 193-399 70-285 (335)
169 PF11698 V-ATPase_H_C: V-ATPas 97.0 0.0013 2.9E-08 49.1 4.5 72 325-396 43-114 (119)
170 KOG1993 Nuclear transport rece 96.9 0.47 1E-05 47.0 22.1 323 73-408 528-875 (978)
171 PF12719 Cnd3: Nuclear condens 96.9 0.2 4.4E-06 45.2 19.1 171 114-295 26-209 (298)
172 KOG0414 Chromosome condensatio 96.9 0.009 1.9E-07 60.9 11.0 159 115-295 920-1083(1251)
173 PF05918 API5: Apoptosis inhib 96.9 0.39 8.4E-06 46.5 21.4 296 72-400 24-348 (556)
174 PF11698 V-ATPase_H_C: V-ATPas 96.9 0.0017 3.7E-08 48.6 4.4 71 284-355 44-115 (119)
175 KOG2956 CLIP-associating prote 96.9 0.081 1.8E-06 48.9 15.7 147 200-355 330-477 (516)
176 PF12719 Cnd3: Nuclear condens 96.9 0.1 2.2E-06 47.1 16.7 170 157-337 26-209 (298)
177 PF02985 HEAT: HEAT repeat; I 96.8 0.0018 3.9E-08 36.0 3.3 30 369-398 1-30 (31)
178 KOG3665 ZYG-1-like serine/thre 96.8 0.14 3E-06 51.6 18.6 197 180-395 494-695 (699)
179 COG5656 SXM1 Importin, protein 96.7 0.1 2.2E-06 51.1 16.1 281 113-400 407-714 (970)
180 KOG1967 DNA repair/transcripti 96.7 0.012 2.6E-07 58.5 9.8 155 238-396 864-1023(1030)
181 PF14668 RICTOR_V: Rapamycin-i 96.7 0.016 3.6E-07 39.3 7.8 67 300-368 4-70 (73)
182 KOG3036 Protein involved in ce 96.7 0.14 3E-06 43.4 14.6 138 258-398 96-248 (293)
183 PF08045 CDC14: Cell division 96.6 0.21 4.5E-06 43.2 15.5 101 130-230 106-208 (257)
184 KOG1020 Sister chromatid cohes 96.5 0.05 1.1E-06 57.2 13.2 164 218-395 795-958 (1692)
185 PF11864 DUF3384: Domain of un 96.5 0.87 1.9E-05 43.9 24.9 286 86-397 5-330 (464)
186 PRK14707 hypothetical protein; 96.5 1 2.2E-05 49.7 22.5 318 73-396 165-486 (2710)
187 PF04078 Rcd1: Cell differenti 96.5 0.13 2.9E-06 44.2 13.5 152 253-407 7-176 (262)
188 PF04078 Rcd1: Cell differenti 96.4 0.19 4.1E-06 43.3 14.3 222 170-395 8-260 (262)
189 KOG2032 Uncharacterized conser 96.4 0.81 1.8E-05 42.9 19.6 265 112-397 252-531 (533)
190 PF08506 Cse1: Cse1; InterPro 96.4 0.13 2.7E-06 47.7 14.0 139 244-392 213-370 (370)
191 KOG2956 CLIP-associating prote 96.4 0.49 1.1E-05 44.0 17.2 180 215-407 302-488 (516)
192 PRK14707 hypothetical protein; 96.4 1.3 2.8E-05 49.0 22.4 320 72-396 206-529 (2710)
193 PF06025 DUF913: Domain of Unk 96.3 0.2 4.3E-06 46.6 15.1 141 105-246 96-249 (379)
194 PF02985 HEAT: HEAT repeat; I 96.3 0.0052 1.1E-07 34.1 2.9 30 326-356 1-30 (31)
195 KOG1820 Microtubule-associated 96.2 0.11 2.4E-06 52.7 13.4 187 160-355 256-443 (815)
196 PF08045 CDC14: Cell division 96.2 0.15 3.3E-06 44.0 12.5 100 298-397 106-207 (257)
197 PF06025 DUF913: Domain of Unk 96.2 0.37 8E-06 44.8 15.9 216 134-366 3-243 (379)
198 PF11865 DUF3385: Domain of un 96.1 0.063 1.4E-06 43.3 9.5 146 115-269 11-156 (160)
199 KOG2137 Protein kinase [Signal 96.1 0.35 7.5E-06 47.5 15.8 141 235-384 383-524 (700)
200 PF01603 B56: Protein phosphat 96.1 0.88 1.9E-05 43.0 18.5 260 90-363 109-378 (409)
201 COG5098 Chromosome condensatio 96.1 0.23 4.9E-06 48.4 14.2 143 115-273 893-1040(1128)
202 KOG1566 Conserved protein Mo25 96.1 0.94 2E-05 40.0 16.8 203 151-356 73-287 (342)
203 PF11701 UNC45-central: Myosin 96.1 0.021 4.6E-07 45.9 6.5 148 200-352 4-156 (157)
204 PF01603 B56: Protein phosphat 96.0 0.24 5.3E-06 46.7 14.2 253 134-399 109-372 (409)
205 KOG2025 Chromosome condensatio 96.0 0.63 1.4E-05 45.6 16.5 113 105-225 77-189 (892)
206 PF06371 Drf_GBD: Diaphanous G 95.9 0.089 1.9E-06 43.8 10.1 111 72-185 67-186 (187)
207 PF14500 MMS19_N: Dos2-interac 95.9 1.1 2.3E-05 39.5 19.5 225 161-402 3-242 (262)
208 KOG1020 Sister chromatid cohes 95.8 3.3 7.3E-05 44.5 26.4 80 298-381 1187-1277(1692)
209 PF11701 UNC45-central: Myosin 95.8 0.086 1.9E-06 42.4 9.1 136 252-394 16-156 (157)
210 KOG1243 Protein kinase [Genera 95.8 0.03 6.5E-07 54.3 7.3 183 72-269 331-514 (690)
211 PF13764 E3_UbLigase_R4: E3 ub 95.8 2.3 5E-05 43.5 20.8 238 112-355 115-406 (802)
212 KOG1243 Protein kinase [Genera 95.8 0.36 7.8E-06 47.2 14.4 190 196-398 327-516 (690)
213 PF14668 RICTOR_V: Rapamycin-i 95.8 0.093 2E-06 35.7 7.6 62 343-407 4-66 (73)
214 PF12530 DUF3730: Protein of u 95.8 1.1 2.3E-05 38.8 16.3 203 159-383 2-218 (234)
215 PF07814 WAPL: Wings apart-lik 95.7 0.6 1.3E-05 43.3 15.5 276 116-400 23-358 (361)
216 KOG3036 Protein involved in ce 95.7 1.1 2.4E-05 38.1 20.3 176 218-397 97-291 (293)
217 KOG1820 Microtubule-associated 95.7 0.51 1.1E-05 48.1 15.7 185 75-270 257-443 (815)
218 PF14500 MMS19_N: Dos2-interac 95.7 1.3 2.9E-05 38.9 17.6 219 118-355 3-237 (262)
219 KOG1566 Conserved protein Mo25 95.5 1.7 3.6E-05 38.5 16.7 203 193-399 73-288 (342)
220 COG5116 RPN2 26S proteasome re 95.4 0.15 3.3E-06 48.4 10.2 128 121-271 523-651 (926)
221 PF13251 DUF4042: Domain of un 95.3 0.72 1.6E-05 37.9 12.6 141 131-271 2-175 (182)
222 KOG2611 Neurochondrin/leucine- 95.3 2.3 5E-05 39.9 16.8 190 74-268 14-223 (698)
223 PF04063 DUF383: Domain of unk 95.2 0.28 6.1E-06 40.7 10.0 124 251-378 5-157 (192)
224 KOG2032 Uncharacterized conser 95.0 1.4 3.1E-05 41.4 14.9 143 167-312 268-415 (533)
225 PF10363 DUF2435: Protein of u 94.7 0.16 3.4E-06 36.5 6.5 84 285-379 5-88 (92)
226 smart00638 LPD_N Lipoprotein N 94.7 1.2 2.6E-05 44.5 15.1 135 241-395 393-543 (574)
227 KOG2025 Chromosome condensatio 94.7 0.3 6.5E-06 47.7 10.0 109 237-351 81-189 (892)
228 PF10363 DUF2435: Protein of u 94.6 0.16 3.4E-06 36.5 6.3 78 327-407 5-82 (92)
229 KOG1949 Uncharacterized conser 94.6 1.5 3.2E-05 43.1 14.4 187 117-312 177-370 (1005)
230 PF11864 DUF3384: Domain of un 94.5 4.8 0.0001 38.9 23.2 255 78-354 35-329 (464)
231 KOG2933 Uncharacterized conser 94.5 0.57 1.2E-05 41.2 10.5 147 240-399 87-236 (334)
232 COG5098 Chromosome condensatio 94.4 0.24 5.3E-06 48.2 8.7 143 242-400 893-1040(1128)
233 PF04063 DUF383: Domain of unk 94.4 0.22 4.8E-06 41.3 7.5 125 167-292 5-156 (192)
234 PF12830 Nipped-B_C: Sister ch 94.3 1.7 3.8E-05 36.1 12.8 147 72-231 9-169 (187)
235 COG5218 YCG1 Chromosome conden 94.2 0.44 9.5E-06 45.6 9.7 109 236-350 86-194 (885)
236 PLN03076 ARF guanine nucleotid 94.1 5.9 0.00013 44.5 19.4 275 82-366 1148-1505(1780)
237 PF06371 Drf_GBD: Diaphanous G 94.1 0.31 6.7E-06 40.5 8.1 109 116-228 68-186 (187)
238 COG5218 YCG1 Chromosome conden 94.0 0.75 1.6E-05 44.1 11.0 117 267-397 77-196 (885)
239 PF08167 RIX1: rRNA processing 94.0 0.51 1.1E-05 38.3 8.9 112 283-398 25-144 (165)
240 PF01347 Vitellogenin_N: Lipop 94.0 0.37 8E-06 48.5 9.9 152 220-395 414-587 (618)
241 KOG2137 Protein kinase [Signal 94.0 3.4 7.4E-05 40.9 15.5 112 280-398 386-497 (700)
242 COG5656 SXM1 Importin, protein 94.0 7.4 0.00016 38.8 18.8 251 134-396 389-669 (970)
243 KOG2933 Uncharacterized conser 93.9 0.94 2E-05 40.0 10.6 140 202-355 91-234 (334)
244 PF12530 DUF3730: Protein of u 93.8 4 8.7E-05 35.3 19.9 204 116-340 2-217 (234)
245 PF12231 Rif1_N: Rap1-interact 93.8 5.8 0.00013 37.1 19.3 223 170-397 59-303 (372)
246 PF12231 Rif1_N: Rap1-interact 93.8 5.8 0.00013 37.1 20.3 306 82-397 4-352 (372)
247 PF01347 Vitellogenin_N: Lipop 93.8 3.9 8.5E-05 41.2 16.7 196 115-345 396-612 (618)
248 KOG2611 Neurochondrin/leucine- 93.7 6.3 0.00014 37.2 16.4 190 119-314 16-227 (698)
249 PF08506 Cse1: Cse1; InterPro 93.7 1.1 2.4E-05 41.6 11.5 148 194-350 205-370 (370)
250 KOG1949 Uncharacterized conser 93.6 0.99 2.1E-05 44.3 11.2 193 196-396 126-330 (1005)
251 KOG3665 ZYG-1-like serine/thre 93.6 1.5 3.2E-05 44.5 13.1 195 138-350 494-692 (699)
252 PF11865 DUF3385: Domain of un 93.4 0.81 1.8E-05 36.9 9.0 146 239-396 8-156 (160)
253 KOG2005 26S proteasome regulat 93.4 3.7 8.1E-05 40.2 14.4 252 116-406 454-713 (878)
254 PF13251 DUF4042: Domain of un 93.4 2 4.3E-05 35.3 11.2 109 287-398 44-175 (182)
255 KOG1993 Nuclear transport rece 93.0 11 0.00025 37.9 20.0 271 116-398 528-813 (978)
256 COG5209 RCD1 Uncharacterized p 92.6 1.4 3E-05 37.0 9.2 137 258-397 117-268 (315)
257 PF07814 WAPL: Wings apart-lik 92.5 5.9 0.00013 36.8 14.5 232 159-399 23-301 (361)
258 KOG1525 Sister chromatid cohes 92.4 19 0.00041 39.1 23.6 113 282-397 258-405 (1266)
259 KOG2999 Regulator of Rac1, req 92.3 11 0.00024 36.2 21.0 158 72-233 84-246 (713)
260 KOG0891 DNA-dependent protein 92.2 1.6 3.4E-05 49.8 11.8 269 80-356 490-764 (2341)
261 PF04388 Hamartin: Hamartin pr 92.2 5.7 0.00012 40.2 14.9 158 71-250 4-161 (668)
262 PF11707 Npa1: Ribosome 60S bi 92.1 9.4 0.0002 35.0 18.4 112 285-396 58-186 (330)
263 KOG2999 Regulator of Rac1, req 91.9 13 0.00027 35.9 18.6 156 159-316 85-246 (713)
264 PF12830 Nipped-B_C: Sister ch 91.5 7.2 0.00016 32.4 12.8 74 115-194 9-82 (187)
265 COG5209 RCD1 Uncharacterized p 91.4 1.3 2.7E-05 37.2 7.7 97 301-398 118-219 (315)
266 KOG1832 HIV-1 Vpr-binding prot 91.4 4 8.7E-05 41.4 12.3 128 276-404 594-780 (1516)
267 PF14225 MOR2-PAG1_C: Cell mor 91.1 10 0.00022 33.4 15.7 177 114-312 64-254 (262)
268 PF08324 PUL: PUL domain; Int 90.8 7.6 0.00017 34.3 13.0 146 130-277 78-238 (268)
269 PF10521 DUF2454: Protein of u 90.6 2.9 6.2E-05 37.4 10.0 138 115-253 120-277 (282)
270 KOG1822 Uncharacterized conser 90.2 31 0.00067 38.6 18.2 231 159-398 878-1128(2067)
271 COG5101 CRM1 Importin beta-rel 90.0 21 0.00046 35.2 20.9 114 285-402 483-604 (1053)
272 KOG0413 Uncharacterized conser 89.7 1.7 3.7E-05 44.3 8.3 131 171-315 945-1076(1529)
273 PF11707 Npa1: Ribosome 60S bi 89.2 18 0.00038 33.2 18.4 156 116-273 58-240 (330)
274 PF08167 RIX1: rRNA processing 89.1 9.6 0.00021 30.9 11.1 115 115-233 26-147 (165)
275 PF06685 DUF1186: Protein of u 89.0 15 0.00032 32.0 15.5 127 157-287 73-201 (249)
276 PF12031 DUF3518: Domain of un 89.0 1.5 3.3E-05 37.3 6.4 83 86-170 139-229 (257)
277 PF03378 CAS_CSE1: CAS/CSE pro 88.9 22 0.00048 34.0 15.3 198 196-400 114-327 (435)
278 cd03569 VHS_Hrs_Vps27p VHS dom 88.9 1.6 3.5E-05 34.3 6.3 74 71-144 41-114 (142)
279 PF06685 DUF1186: Protein of u 88.3 16 0.00035 31.7 13.6 117 240-374 72-203 (249)
280 PF12726 SEN1_N: SEN1 N termin 88.3 12 0.00027 38.5 13.9 145 72-231 442-587 (727)
281 PF11538 Snurportin1: Snurport 88.2 0.48 1E-05 27.7 2.1 38 11-49 2-39 (40)
282 cd03568 VHS_STAM VHS domain fa 88.0 2 4.4E-05 33.9 6.3 74 71-144 37-110 (144)
283 PF03378 CAS_CSE1: CAS/CSE pro 87.8 16 0.00035 34.8 13.3 228 169-407 42-282 (435)
284 PLN03076 ARF guanine nucleotid 87.6 57 0.0012 37.2 21.0 273 119-399 1142-1491(1780)
285 PF12074 DUF3554: Domain of un 87.5 7.3 0.00016 35.9 10.7 213 114-335 22-254 (339)
286 smart00288 VHS Domain present 87.1 2.4 5.3E-05 32.9 6.3 74 71-144 37-111 (133)
287 KOG1992 Nuclear export recepto 86.9 30 0.00064 35.3 14.5 282 110-399 357-670 (960)
288 PF12031 DUF3518: Domain of un 86.5 2.6 5.6E-05 36.0 6.4 80 130-210 139-227 (257)
289 KOG1410 Nuclear transport rece 86.3 38 0.00082 33.8 22.0 290 72-377 6-354 (1082)
290 cd03569 VHS_Hrs_Vps27p VHS dom 85.8 15 0.00033 28.8 10.6 74 158-231 42-116 (142)
291 cd03568 VHS_STAM VHS domain fa 85.8 11 0.00024 29.8 9.3 97 292-398 13-111 (144)
292 cd03567 VHS_GGA VHS domain fam 85.8 3.5 7.6E-05 32.3 6.5 73 71-144 38-116 (139)
293 cd03561 VHS VHS domain family; 85.6 4.8 0.0001 31.3 7.2 74 71-144 37-112 (133)
294 cd03561 VHS VHS domain family; 85.3 15 0.00033 28.4 10.4 74 158-231 38-114 (133)
295 KOG1788 Uncharacterized conser 84.9 13 0.00029 38.8 11.3 292 70-378 465-784 (2799)
296 KOG4464 Signaling protein RIC- 84.8 34 0.00073 31.9 19.6 156 74-231 48-233 (532)
297 PF10274 ParcG: Parkin co-regu 84.3 22 0.00047 29.3 11.4 82 239-321 36-118 (183)
298 PF08324 PUL: PUL domain; Int 84.3 2.4 5.2E-05 37.6 5.7 133 212-344 122-263 (268)
299 PF10521 DUF2454: Protein of u 84.0 11 0.00023 33.7 9.7 117 284-400 120-256 (282)
300 smart00288 VHS Domain present 83.8 18 0.0004 28.0 10.1 74 158-231 38-113 (133)
301 smart00638 LPD_N Lipoprotein N 82.9 54 0.0012 32.8 21.7 135 200-353 394-543 (574)
302 KOG0891 DNA-dependent protein 82.4 57 0.0012 38.2 15.9 230 162-399 486-721 (2341)
303 PF00790 VHS: VHS domain; Int 81.5 21 0.00045 28.0 9.4 74 158-231 43-120 (140)
304 PF04869 Uso1_p115_head: Uso1 81.4 42 0.00091 30.5 14.2 154 129-312 52-231 (312)
305 PF11791 Aconitase_B_N: Aconit 80.9 11 0.00025 29.5 7.3 100 242-355 23-123 (154)
306 KOG2149 Uncharacterized conser 80.5 29 0.00064 32.1 10.9 120 285-407 60-180 (393)
307 KOG0392 SNF2 family DNA-depend 80.3 18 0.0004 38.6 10.5 237 71-315 77-328 (1549)
308 cd03572 ENTH_epsin_related ENT 80.2 24 0.00052 26.9 11.1 99 293-397 11-119 (122)
309 KOG4464 Signaling protein RIC- 80.1 51 0.0011 30.8 12.1 153 203-355 49-231 (532)
310 PF04388 Hamartin: Hamartin pr 79.9 41 0.0009 34.2 13.0 92 285-379 72-163 (668)
311 KOG1988 Uncharacterized conser 79.7 79 0.0017 32.6 14.4 251 74-355 27-281 (970)
312 KOG0413 Uncharacterized conser 79.4 87 0.0019 32.9 18.9 128 86-231 946-1075(1529)
313 PF10274 ParcG: Parkin co-regu 79.0 35 0.00076 28.1 11.2 118 283-402 38-169 (183)
314 PF13001 Ecm29: Proteasome sta 78.3 69 0.0015 31.4 13.7 173 168-355 248-443 (501)
315 PF08713 DNA_alkylation: DNA a 78.1 39 0.00085 28.4 10.9 139 244-407 54-194 (213)
316 PF14726 RTTN_N: Rotatin, an a 77.6 25 0.00053 25.6 8.2 65 281-347 28-92 (98)
317 cd03572 ENTH_epsin_related ENT 77.5 18 0.00039 27.5 7.4 55 348-407 23-77 (122)
318 smart00802 UME Domain in UVSB 77.4 14 0.00031 27.4 6.8 78 325-407 11-93 (107)
319 PF08713 DNA_alkylation: DNA a 77.3 43 0.00093 28.2 11.7 141 117-282 54-196 (213)
320 KOG2038 CAATT-binding transcri 77.1 90 0.002 31.8 16.9 103 116-229 306-409 (988)
321 KOG0301 Phospholipase A2-activ 76.9 84 0.0018 31.4 16.9 160 129-293 558-726 (745)
322 PF12074 DUF3554: Domain of un 76.9 61 0.0013 29.8 17.2 195 200-401 23-239 (339)
323 PF00790 VHS: VHS domain; Int 76.2 4.5 9.9E-05 31.7 4.2 74 71-144 42-118 (140)
324 KOG1848 Uncharacterized conser 76.1 80 0.0017 34.5 13.7 225 167-396 852-1131(1610)
325 PF13001 Ecm29: Proteasome sta 76.0 82 0.0018 30.9 13.5 100 129-231 335-445 (501)
326 PF14726 RTTN_N: Rotatin, an a 75.8 28 0.00061 25.3 8.3 68 112-181 28-95 (98)
327 cd03567 VHS_GGA VHS domain fam 75.7 36 0.00079 26.6 9.4 96 292-397 14-116 (139)
328 KOG0392 SNF2 family DNA-depend 75.5 55 0.0012 35.3 12.3 178 214-399 143-327 (1549)
329 smart00567 EZ_HEAT E-Z type HE 75.2 5.6 0.00012 21.4 3.2 18 341-360 2-19 (30)
330 PF04499 SAPS: SIT4 phosphatas 75.0 39 0.00085 32.7 10.8 112 283-398 21-149 (475)
331 PF12783 Sec7_N: Guanine nucle 74.9 43 0.00094 27.1 10.3 108 85-196 36-156 (168)
332 KOG0301 Phospholipase A2-activ 74.4 92 0.002 31.1 12.8 142 82-231 555-706 (745)
333 PF08767 CRM1_C: CRM1 C termin 74.3 70 0.0015 29.2 16.7 181 172-354 42-243 (319)
334 PF12726 SEN1_N: SEN1 N termin 73.9 65 0.0014 33.3 12.9 126 240-368 440-568 (727)
335 KOG1822 Uncharacterized conser 73.0 1.8E+02 0.0038 33.3 18.4 230 116-354 878-1126(2067)
336 PF09758 FPL: Uncharacterised 73.0 21 0.00046 28.2 7.0 123 146-268 15-147 (149)
337 PF08064 UME: UME (NUC010) dom 72.8 21 0.00046 26.4 6.8 78 325-407 11-93 (107)
338 PF14225 MOR2-PAG1_C: Cell mor 72.3 69 0.0015 28.3 16.8 179 159-355 66-254 (262)
339 KOG1992 Nuclear export recepto 71.2 1.3E+02 0.0028 31.0 18.9 34 69-102 496-529 (960)
340 KOG1788 Uncharacterized conser 71.1 1.5E+02 0.0033 31.7 14.4 253 94-355 665-982 (2799)
341 PF11229 DUF3028: Protein of u 71.1 1E+02 0.0022 29.8 13.5 187 114-311 97-305 (589)
342 cd08050 TAF6 TATA Binding Prot 70.8 60 0.0013 30.0 10.6 110 200-310 211-338 (343)
343 KOG2149 Uncharacterized conser 70.1 44 0.00095 31.0 9.3 113 243-357 60-172 (393)
344 PF09324 DUF1981: Domain of un 69.7 10 0.00022 26.8 4.3 70 196-265 14-83 (86)
345 PF08216 CTNNBL: Catenin-beta- 69.3 8.5 0.00018 28.4 3.8 44 258-302 63-106 (108)
346 PF04869 Uso1_p115_head: Uso1 68.9 92 0.002 28.3 14.8 159 240-398 33-232 (312)
347 cd08050 TAF6 TATA Binding Prot 68.9 48 0.001 30.6 9.6 113 239-353 208-338 (343)
348 COG5110 RPN1 26S proteasome re 68.3 1.2E+02 0.0027 29.6 17.5 90 299-401 620-709 (881)
349 KOG1832 HIV-1 Vpr-binding prot 67.9 42 0.00091 34.7 9.2 161 104-274 591-777 (1516)
350 KOG3132 m3G-cap-specific nucle 67.6 3.3 7.1E-05 35.0 1.6 45 9-53 23-67 (325)
351 PF08216 CTNNBL: Catenin-beta- 66.6 6.8 0.00015 28.9 2.8 42 132-174 63-104 (108)
352 KOG2676 Uncharacterized conser 66.3 9 0.0002 34.7 4.1 62 135-196 376-439 (478)
353 KOG1525 Sister chromatid cohes 65.9 2.2E+02 0.0047 31.5 20.4 113 239-355 257-405 (1266)
354 KOG2549 Transcription initiati 65.9 1.4E+02 0.003 29.2 12.2 144 72-228 208-369 (576)
355 PF04821 TIMELESS: Timeless pr 65.3 99 0.0021 27.4 15.6 62 69-144 11-72 (266)
356 PF08389 Xpo1: Exportin 1-like 64.6 34 0.00073 26.7 7.0 49 255-307 100-148 (148)
357 PF14666 RICTOR_M: Rapamycin-i 64.3 94 0.002 26.7 13.2 130 255-397 78-225 (226)
358 PF09324 DUF1981: Domain of un 64.0 21 0.00046 25.2 5.0 67 322-393 14-84 (86)
359 PF06743 FAST_1: FAST kinase-l 63.8 31 0.00068 23.3 5.6 68 219-287 3-70 (71)
360 PF08064 UME: UME (NUC010) dom 63.3 52 0.0011 24.4 7.2 87 283-375 11-103 (107)
361 smart00802 UME Domain in UVSB 62.9 46 0.001 24.7 6.7 86 283-374 11-102 (107)
362 PF08389 Xpo1: Exportin 1-like 62.1 41 0.00089 26.2 7.1 49 85-139 100-148 (148)
363 PF11791 Aconitase_B_N: Aconit 61.6 24 0.00052 27.8 5.1 101 72-188 23-125 (154)
364 PF03130 HEAT_PBS: PBS lyase H 60.7 9.3 0.0002 20.1 2.0 14 342-355 1-14 (27)
365 PLN03205 ATR interacting prote 60.3 1.5E+02 0.0032 27.7 11.1 160 240-400 322-519 (652)
366 KOG2199 Signal transducing ada 59.0 75 0.0016 29.4 8.5 97 293-399 22-120 (462)
367 PF12463 DUF3689: Protein of u 57.7 1.4E+02 0.003 27.0 10.0 84 282-365 94-183 (303)
368 cd03565 VHS_Tom1 VHS domain fa 57.5 54 0.0012 25.7 6.7 74 71-144 38-115 (141)
369 KOG0889 Histone acetyltransfer 56.6 4.3E+02 0.0092 32.7 15.3 176 199-376 1126-1327(3550)
370 PF12783 Sec7_N: Guanine nucle 56.2 1.1E+02 0.0023 24.8 10.1 90 320-415 68-160 (168)
371 PF10257 RAI16-like: Retinoic 55.4 1.8E+02 0.0038 27.1 11.3 128 277-407 3-167 (353)
372 cd00197 VHS_ENTH_ANTH VHS, ENT 55.3 62 0.0013 24.2 6.6 71 72-142 38-113 (115)
373 PF12054 DUF3535: Domain of un 54.5 2.1E+02 0.0045 27.6 12.7 79 85-168 101-179 (441)
374 PF04499 SAPS: SIT4 phosphatas 53.8 1E+02 0.0023 29.9 9.2 83 149-231 54-150 (475)
375 KOG4524 Uncharacterized conser 53.6 46 0.00099 34.7 6.9 96 240-337 802-901 (1014)
376 KOG1087 Cytosolic sorting prot 53.6 65 0.0014 31.0 7.6 96 291-396 13-111 (470)
377 PF08767 CRM1_C: CRM1 C termin 53.6 1.8E+02 0.0039 26.6 13.0 159 130-291 42-219 (319)
378 PF12765 Cohesin_HEAT: HEAT re 53.0 14 0.00029 22.0 2.1 25 368-392 18-42 (42)
379 KOG0803 Predicted E3 ubiquitin 52.8 3.7E+02 0.008 30.0 17.8 255 72-335 42-330 (1312)
380 KOG2549 Transcription initiati 52.5 2.4E+02 0.0052 27.7 13.0 140 161-311 211-369 (576)
381 PF06012 DUF908: Domain of Unk 52.0 94 0.002 28.5 8.4 75 258-333 239-324 (329)
382 cd06561 AlkD_like A new struct 51.3 50 0.0011 27.4 6.1 75 286-367 108-182 (197)
383 KOG1791 Uncharacterized conser 50.0 1.4E+02 0.0031 33.1 10.0 198 147-345 1429-1649(1758)
384 PF14631 FancD2: Fanconi anaem 49.4 1.4E+02 0.003 33.6 10.2 149 114-270 431-587 (1426)
385 KOG2011 Sister chromatid cohes 49.2 78 0.0017 33.6 7.9 136 251-395 297-433 (1048)
386 PF13925 Katanin_con80: con80 49.0 1.3E+02 0.0027 24.4 7.8 76 197-273 26-101 (164)
387 PF03752 ALF: Short repeats of 48.6 51 0.0011 19.7 4.1 35 373-414 4-38 (43)
388 cd03565 VHS_Tom1 VHS domain fa 48.3 1.3E+02 0.0029 23.5 8.8 98 292-398 14-116 (141)
389 cd06561 AlkD_like A new struct 47.9 68 0.0015 26.6 6.4 71 328-407 108-180 (197)
390 PF12054 DUF3535: Domain of un 46.1 2.8E+02 0.0061 26.7 11.9 76 172-253 102-180 (441)
391 KOG2213 Apoptosis inhibitor 5/ 46.1 2.6E+02 0.0056 26.2 15.9 131 170-312 37-180 (460)
392 KOG2199 Signal transducing ada 46.0 1.9E+02 0.004 27.1 8.8 95 252-355 23-118 (462)
393 PF14663 RasGEF_N_2: Rapamycin 45.7 45 0.00098 25.1 4.4 37 369-407 9-45 (115)
394 PF06012 DUF908: Domain of Unk 44.2 1E+02 0.0023 28.2 7.4 66 130-196 237-307 (329)
395 PF04118 Dopey_N: Dopey, N-ter 43.7 2.5E+02 0.0055 25.5 14.4 186 202-397 57-254 (307)
396 KOG2073 SAP family cell cycle 43.5 4.2E+02 0.009 27.9 22.4 199 191-397 182-396 (838)
397 KOG1087 Cytosolic sorting prot 42.8 54 0.0012 31.5 5.4 70 71-141 38-109 (470)
398 KOG2085 Serine/threonine prote 42.0 3.1E+02 0.0066 25.9 10.7 71 239-315 339-417 (457)
399 PF14663 RasGEF_N_2: Rapamycin 41.9 58 0.0013 24.5 4.5 39 115-155 9-47 (115)
400 PF14666 RICTOR_M: Rapamycin-i 41.7 2.3E+02 0.0049 24.4 11.7 129 214-354 78-224 (226)
401 PF12397 U3snoRNP10: U3 small 41.5 1.5E+02 0.0033 22.3 9.6 70 115-188 7-76 (121)
402 KOG2676 Uncharacterized conser 41.0 34 0.00074 31.2 3.5 61 303-364 376-438 (478)
403 PF12463 DUF3689: Protein of u 39.8 2.9E+02 0.0063 25.0 13.1 80 240-319 94-180 (303)
404 KOG2005 26S proteasome regulat 39.5 4.2E+02 0.0092 26.9 15.6 248 114-371 48-316 (878)
405 COG5537 IRR1 Cohesin [Cell div 39.1 4.1E+02 0.0089 26.6 11.5 97 169-269 287-385 (740)
406 KOG2073 SAP family cell cycle 37.8 3.7E+02 0.0081 28.2 10.6 63 317-379 182-250 (838)
407 PF15178 TOM_sub5: Mitochondri 37.7 49 0.0011 20.0 2.7 12 18-29 9-20 (51)
408 PRK09169 hypothetical protein; 37.6 7.7E+02 0.017 29.3 21.2 91 129-227 288-385 (2316)
409 KOG4231 Intracellular membrane 37.3 30 0.00066 33.1 2.8 69 328-397 331-399 (763)
410 PF01365 RYDR_ITPR: RIH domain 37.2 2E+02 0.0044 24.1 7.7 78 298-379 76-153 (207)
411 KOG2085 Serine/threonine prote 36.9 1.8E+02 0.0038 27.4 7.4 84 147-231 167-250 (457)
412 COG5537 IRR1 Cohesin [Cell div 36.8 4.5E+02 0.0097 26.3 10.7 104 247-355 281-386 (740)
413 cd07064 AlkD_like_1 A new stru 36.7 2.5E+02 0.0053 23.7 8.0 75 285-367 117-191 (208)
414 PF09758 FPL: Uncharacterised 36.5 1.4E+02 0.003 23.7 5.9 126 271-396 14-148 (149)
415 PF08454 RIH_assoc: RyR and IP 36.0 1.8E+02 0.004 21.6 7.1 41 296-336 66-107 (109)
416 PF14868 DUF4487: Domain of un 35.8 2.1E+02 0.0046 28.4 8.3 77 326-403 480-558 (559)
417 PF07923 N1221: N1221-like pro 35.7 93 0.002 28.0 5.6 54 325-379 60-127 (293)
418 PF12397 U3snoRNP10: U3 small 35.5 1.9E+02 0.0042 21.7 10.8 72 239-314 4-76 (121)
419 PRK09169 hypothetical protein; 35.4 8.4E+02 0.018 29.1 21.5 10 386-395 502-511 (2316)
420 PF04821 TIMELESS: Timeless pr 35.2 3.2E+02 0.0069 24.2 13.0 44 361-404 171-215 (266)
421 KOG0889 Histone acetyltransfer 35.0 6.4E+02 0.014 31.4 12.6 154 238-398 1123-1307(3550)
422 PLN03205 ATR interacting prote 34.8 2.1E+02 0.0045 26.8 7.4 114 285-398 325-447 (652)
423 COG2914 Uncharacterized protei 32.4 24 0.00052 25.2 1.0 29 10-38 68-97 (99)
424 KOG1848 Uncharacterized conser 32.2 7.2E+02 0.016 27.9 11.6 220 129-354 856-1131(1610)
425 cd03562 CID CID (CTD-Interacti 31.6 2E+02 0.0044 21.3 6.1 88 295-393 17-104 (114)
426 KOG2152 Sister chromatid cohes 31.5 4.8E+02 0.01 26.8 9.7 54 177-230 349-406 (865)
427 COG5095 TAF6 Transcription ini 31.4 3.9E+02 0.0085 24.1 9.6 135 166-311 207-358 (450)
428 PF07923 N1221: N1221-like pro 31.4 1E+02 0.0023 27.7 5.2 54 282-335 59-126 (293)
429 PF08623 TIP120: TATA-binding 31.0 1.3E+02 0.0028 24.5 5.1 77 255-336 41-117 (169)
430 cd00197 VHS_ENTH_ANTH VHS, ENT 30.4 2.3E+02 0.0049 21.0 9.6 70 326-396 38-114 (115)
431 COG5095 TAF6 Transcription ini 29.8 3.8E+02 0.0082 24.2 7.9 111 158-269 231-358 (450)
432 cd03562 CID CID (CTD-Interacti 28.3 2.5E+02 0.0054 20.8 7.6 86 212-306 17-102 (114)
433 cd07064 AlkD_like_1 A new stru 27.7 3.7E+02 0.0081 22.6 14.4 134 248-407 53-189 (208)
434 PF01365 RYDR_ITPR: RIH domain 26.9 1.4E+02 0.003 25.1 5.0 78 171-252 75-153 (207)
435 cd01882 BMS1 Bms1. Bms1 is an 26.0 25 0.00054 30.2 0.3 23 28-50 11-33 (225)
436 TIGR00117 acnB aconitate hydra 25.9 3.4E+02 0.0074 28.4 8.0 100 241-354 25-125 (844)
437 KOG2022 Nuclear transport rece 25.7 8.1E+02 0.018 25.9 13.8 135 171-314 481-621 (982)
438 KOG4337 Microsomal triglycerid 25.5 7.2E+02 0.016 25.2 21.1 52 256-317 548-599 (896)
439 PF14676 FANCI_S2: FANCI solen 25.4 1.4E+02 0.0031 23.9 4.5 100 283-393 55-157 (158)
440 PF11935 DUF3453: Domain of un 24.5 4.1E+02 0.0089 23.0 7.5 83 240-322 42-155 (239)
441 PF11502 BCL9: B-cell lymphoma 24.2 1.2E+02 0.0027 17.7 2.7 19 23-41 4-22 (40)
442 PF07571 DUF1546: Protein of u 24.1 2.7E+02 0.0059 19.8 6.1 58 211-268 17-76 (92)
443 KOG4231 Intracellular membrane 24.0 1.5E+02 0.0033 28.7 4.9 70 285-355 330-399 (763)
444 PF07539 DRIM: Down-regulated 23.6 91 0.002 24.5 3.0 29 366-394 15-43 (141)
445 KOG2038 CAATT-binding transcri 23.5 8.5E+02 0.018 25.4 18.6 176 83-272 316-528 (988)
446 PF14631 FancD2: Fanconi anaem 23.4 3E+02 0.0065 31.1 7.7 129 210-345 445-573 (1426)
447 PF08620 RPAP1_C: RPAP1-like, 22.5 1.9E+02 0.004 19.8 3.9 29 72-100 40-68 (73)
448 PF11935 DUF3453: Domain of un 22.3 5.2E+02 0.011 22.4 8.0 81 283-363 43-153 (239)
449 PF04510 DUF577: Family of unk 22.1 4.4E+02 0.0096 21.5 9.9 112 283-396 42-163 (174)
450 PF08623 TIP120: TATA-binding 21.3 4.6E+02 0.0099 21.4 6.6 77 212-292 39-115 (169)
451 KOG1877 Putative transmembrane 21.1 1.5E+02 0.0032 30.8 4.5 109 265-379 39-151 (819)
452 KOG0803 Predicted E3 ubiquitin 20.5 9.4E+02 0.02 27.0 10.4 115 239-355 39-153 (1312)
No 1
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=100.00 E-value=1.3e-76 Score=499.05 Aligned_cols=404 Identities=58% Similarity=0.882 Sum_probs=373.8
Q ss_pred ccHHHhhhccC--CCCchHHHHhHHHHHHHHHHHhhhHHHHhhhhccccCCCCCCchhhhhhhhhccHHHHHHhhcCCCH
Q 014945 8 RTEVRRSKYKV--AVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQPLTNSAALDNKKLESLPAMVAGVWSDDR 85 (415)
Q Consensus 8 ~~~~~~~~~k~--~~~~~~~r~~r~~~~~~lRk~~r~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~~~ 85 (415)
.++.|+..||+ .++++|+||+|++++++|||+||+|.+.||||.....+....+.....++....+|.+...|.|+|-
T Consensus 6 ~p~~Rr~~fk~Kg~f~adelRr~ReeQQvElRkqKreE~LnKrRNl~dv~e~a~ss~i~meqq~~~elp~lt~~l~SdDi 85 (526)
T COG5064 6 VPEARRYNFKGKGRFSADELRRRREEQQVELRKQKREELLNKRRNLADVSEEAESSFIPMEQQFYSELPQLTQQLFSDDI 85 (526)
T ss_pred chHHHHhcccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhhccCchhHHhhhhhHHHHHHHhhhHH
Confidence 67889999998 4779999999999999999999999999999973322221111123334444678999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHh
Q 014945 86 NIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRL 165 (415)
Q Consensus 86 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~l 165 (415)
+.+..|+..+++++|.+.+||++.+++.|++|.|++++.+......+++|+|+|+|+++++..++..+++.|++|.++++
T Consensus 86 e~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiql 165 (526)
T COG5064 86 EQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQL 165 (526)
T ss_pred HHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHH
Confidence 99999999999999999999999999999999999999654437889999999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccch-hHhHHHHHHHHHHHhhhCC-CCCchhhhhchH
Q 014945 166 LSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA-KLSMLRNATWTLSNFCRGK-PQPLFEQTRPAL 243 (415)
Q Consensus 166 l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~-~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~l 243 (415)
|.+++..++++++|+|||++++++.+|+.+++.|++++++.++..+. +..+.+++.|+|+|||+++ |.+....+...+
T Consensus 166 L~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqal 245 (526)
T COG5064 166 LSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQAL 245 (526)
T ss_pred HcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHH
Confidence 99999999999999999999999999999999999999999995443 6789999999999999998 888899999999
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHH
Q 014945 244 PALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIIN 323 (415)
Q Consensus 244 ~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~ 323 (415)
|.|.+++.+.|+++..+|||+++++++++.+.++.+++.|+.++|+++|.+++..++.+|++.+||+++|++.+++.+++
T Consensus 246 piL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~ 325 (526)
T COG5064 246 PILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIIN 325 (526)
T ss_pred HHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehhee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhCCC--CH
Q 014945 324 HQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG--SN 401 (415)
Q Consensus 324 ~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~~--~~ 401 (415)
.|+++.+..+|+++ ...+|++|||+++||++|+.++++.+++.+++|.|+.+|.+.+.+++++||||+.|...+| -+
T Consensus 326 ~G~L~a~~~lLs~~-ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~P 404 (526)
T COG5064 326 CGALKAFRSLLSSP-KENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRP 404 (526)
T ss_pred cccHHHHHHHhcCh-hhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCc
Confidence 99999999999999 8899999999999999999999999999999999999999999999999999999999987 48
Q ss_pred HHHHHHHHHhhCCC
Q 014945 402 EQIKYKFFYVSRTC 415 (415)
Q Consensus 402 ~~~~~l~~~~~~g~ 415 (415)
++++|| +++|+
T Consensus 405 D~iryL---v~qG~ 415 (526)
T COG5064 405 DIIRYL---VSQGF 415 (526)
T ss_pred hHHHHH---HHccc
Confidence 999999 99996
No 2
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.3e-73 Score=514.30 Aligned_cols=401 Identities=67% Similarity=1.010 Sum_probs=369.5
Q ss_pred HHHhhhccC-CCCchHHHHhHHHHHHHHHHHhhhHHHHhhhhccccCCCCCCchhhhhhhhhccHHHHHHhhcCCCHHHH
Q 014945 10 EVRRSKYKV-AVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQPLTNSAALDNKKLESLPAMVAGVWSDDRNIQ 88 (415)
Q Consensus 10 ~~~~~~~k~-~~~~~~~r~~r~~~~~~lRk~~r~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~ 88 (415)
..|.++||+ +++++|+||||++..+|+||+||+|.++|||+........+. ...........+..+..+.|+++..+
T Consensus 6 ~~~~~~~k~~~~~~~e~Rrrr~e~~veiRk~kree~l~k~R~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~S~~~~~q 83 (514)
T KOG0166|consen 6 NNRRRRYKNKGVDAEEMRRRREEQVVEIRKNKREESLLKRRNDEEELMLDEL--LSDSQSQASNLELMLAALYSDDPQQQ 83 (514)
T ss_pred HHHHHHHhhccccHHHHHHhcchhHHHHHHHHHHHHHHHHhhhhhhcccccc--cchhHHHhhhhHHHHHHHhCCCHHHH
Confidence 456666666 699999999999999999999999999999993222221110 11111122346889999999999999
Q ss_pred HHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCC
Q 014945 89 LDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS 168 (415)
Q Consensus 89 ~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~ 168 (415)
..+...++++++.+.+++++.++..|++|.|+++|...+++.++.+|+|+|+||++++.+.+..+++.|++|.++.++.+
T Consensus 84 ~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s 163 (514)
T KOG0166|consen 84 LTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSS 163 (514)
T ss_pred HHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcC
Confidence 99999999999999899999999999999999999876669999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCC-CCCchhhhhchHHHHH
Q 014945 169 PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALE 247 (415)
Q Consensus 169 ~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~l~~l~ 247 (415)
++..++++|+|+|+|++++++.+|+.++..|++++|+.++..+....+.++++|+|+|||+++ |.+.+..+..++|.|.
T Consensus 164 ~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~ 243 (514)
T KOG0166|consen 164 PSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALL 243 (514)
T ss_pred CcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999966666689999999999999999 8899999999999999
Q ss_pred HhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCCh
Q 014945 248 RLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQAL 327 (415)
Q Consensus 248 ~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l 327 (415)
.++++.|++|..+|||+++||+++..+.++.+++.|++++|+.+|.+.++.++.+|++++||+++|++.+++.+++.|++
T Consensus 244 ~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L 323 (514)
T KOG0166|consen 244 RLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGAL 323 (514)
T ss_pred HHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCHHHHHHH
Q 014945 328 PCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKYK 407 (415)
Q Consensus 328 ~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l 407 (415)
|.|..++...+...+|++|||+++||++|++++++.+++.|++|.|+.+|+.+++++|++|+||++|++.+|+++|+.||
T Consensus 324 ~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yL 403 (514)
T KOG0166|consen 324 PVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYL 403 (514)
T ss_pred HHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHH
Confidence 99999999554778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCC
Q 014945 408 FFYVSRTC 415 (415)
Q Consensus 408 ~~~~~~g~ 415 (415)
+++||
T Consensus 404 ---v~~gi 408 (514)
T KOG0166|consen 404 ---VEQGI 408 (514)
T ss_pred ---HHcCC
Confidence 99997
No 3
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1e-45 Score=336.07 Aligned_cols=326 Identities=29% Similarity=0.462 Sum_probs=297.6
Q ss_pred ccHHHHHHhhcC-CCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchh
Q 014945 71 ESLPAMVAGVWS-DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN 149 (415)
Q Consensus 71 ~~i~~l~~~l~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~ 149 (415)
|.+|.+++.|.. +++.+++.|+|+|.+++++. .+..+.+++.|.+|.|++++.+++ ..++.+|+|+|+|++.+++.+
T Consensus 109 G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgt-se~T~~vv~agavp~fi~Ll~s~~-~~v~eQavWALgNIagds~~~ 186 (514)
T KOG0166|consen 109 GVVPRLVEFLSRDDNPTLQFEAAWALTNIASGT-SEQTKVVVDAGAVPIFIQLLSSPS-ADVREQAVWALGNIAGDSPDC 186 (514)
T ss_pred CcHHHHHHHHccCCChhHHHHHHHHHHHHhcCc-hhhccccccCCchHHHHHHhcCCc-HHHHHHHHHHHhccccCChHH
Confidence 789999999985 56999999999999999987 888889999999999999999999 999999999999999999999
Q ss_pred hHHHHhCCChHHHHHhhCCCCH-HHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhh
Q 014945 150 TRVVIDHGAVPIFVRLLSSPTD-DVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC 228 (415)
Q Consensus 150 ~~~~~~~g~i~~L~~ll~~~~~-~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~ 228 (415)
++.+++.|+++.|+.++..++. .+..+++|+|.|||.+....-..-.-..+++.|..++ ++.|+.+...++|++++|+
T Consensus 187 Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll-~~~D~~Vl~Da~WAlsyLs 265 (514)
T KOG0166|consen 187 RDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLL-HSTDEEVLTDACWALSYLT 265 (514)
T ss_pred HHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHh
Confidence 9999999999999999988665 7889999999999976521122222234888999999 8999999999999999999
Q ss_pred hCC-CCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcC-CCChhhHHHHHHH
Q 014945 229 RGK-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR-HPSPSVLIPALRT 306 (415)
Q Consensus 229 ~~~-~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~-~~~~~v~~~a~~~ 306 (415)
.+. .........|++|.|+++|.++++.++.+|+++++|++.+++.+.+.+++.|+++.|..+|. ++...++..|||+
T Consensus 266 dg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~ 345 (514)
T KOG0166|consen 266 DGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWT 345 (514)
T ss_pred cCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHH
Confidence 886 33445555899999999999999999999999999999999999999999999999999998 6677799999999
Q ss_pred HHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhc-CCHHHHHHHHHcCCHHHHHHHhccCCHHHH
Q 014945 307 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA-GNVNQIQAIIEAGIIGPLVNLLLNAEFEIK 385 (415)
Q Consensus 307 l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~-~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~ 385 (415)
++||+.|+.++++.+++.|++|.|+.+|+++ +.++|++|+|+++|++. |+++++.++++.|+++.|+++|.-.|.++.
T Consensus 346 iSNItAG~~~qiqaVida~l~p~Li~~l~~~-ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii 424 (514)
T KOG0166|consen 346 ISNITAGNQEQIQAVIDANLIPVLINLLQTA-EFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKII 424 (514)
T ss_pred HHHhhcCCHHHHHHHHHcccHHHHHHHHhcc-chHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHH
Confidence 9999999999999999999999999999999 99999999999999998 799999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCC
Q 014945 386 KEAAWAISNATSGGS 400 (415)
Q Consensus 386 ~~a~~aL~nl~~~~~ 400 (415)
..++.+|.|+...+.
T Consensus 425 ~v~Ld~l~nil~~~e 439 (514)
T KOG0166|consen 425 LVALDGLENILKVGE 439 (514)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999986653
No 4
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=100.00 E-value=3.1e-45 Score=309.40 Aligned_cols=331 Identities=27% Similarity=0.387 Sum_probs=295.2
Q ss_pred ccHHHHHHhhc-CCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchh
Q 014945 71 ESLPAMVAGVW-SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN 149 (415)
Q Consensus 71 ~~i~~l~~~l~-~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~ 149 (415)
|.+|.+++++. .+..-.++.|+|+|.+++|+. ....+.+++.|.+|.|+++|.+++ .+++.+++|+|+|++.+++.+
T Consensus 114 GvVpRfvefm~~~q~~mlqfEAaWalTNiaSGt-t~QTkvVvd~~AVPlfiqlL~s~~-~~V~eQavWALGNiAGDS~~~ 191 (526)
T COG5064 114 GVVPRFVEFMDEIQRDMLQFEAAWALTNIASGT-TQQTKVVVDAGAVPLFIQLLSSTE-DDVREQAVWALGNIAGDSEGC 191 (526)
T ss_pred cccHHHHHHHHhcchhHHHHHHHHHHhhhccCc-ccceEEEEeCCchHHHHHHHcCch-HHHHHHHHHHhccccCCchhH
Confidence 67899999995 556677899999999999987 777788999999999999999998 899999999999999999999
Q ss_pred hHHHHhCCChHHHHHhhCCC--CHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHh
Q 014945 150 TRVVIDHGAVPIFVRLLSSP--TDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNF 227 (415)
Q Consensus 150 ~~~~~~~g~i~~L~~ll~~~--~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l 227 (415)
++.+...|++++++.++.+. +..+...+.|+|.|+|.+....-+.-.-...++.|..++ .+.++++...|+|++++|
T Consensus 192 RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLi-ys~D~evlvDA~WAiSYl 270 (526)
T COG5064 192 RDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLI-YSRDPEVLVDACWAISYL 270 (526)
T ss_pred HHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHH-hhcCHHHHHHHHHHHHHh
Confidence 99999999999999998774 458899999999999965321112222223788888888 888999999999999999
Q ss_pred hhCCCCC-chhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHH
Q 014945 228 CRGKPQP-LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 306 (415)
Q Consensus 228 ~~~~~~~-~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~ 306 (415)
+.++... ......++.+.|+++|.+++..++.++++.++|+..+++.+.+.+++.|+++.+..+|+++...++..|||+
T Consensus 271 sDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWT 350 (526)
T COG5064 271 SDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWT 350 (526)
T ss_pred ccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhhee
Confidence 9886333 333447788899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcC---CHHHHHHHHHcCCHHHHHHHhccCCHH
Q 014945 307 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG---NVNQIQAIIEAGIIGPLVNLLLNAEFE 383 (415)
Q Consensus 307 l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~---~~~~~~~l~~~~~i~~L~~~l~~~~~~ 383 (415)
++|+..|+.++++.+++.+++|.|+.+|.+. +..++++|||+++|...| -|+.+.++++.|++..|+++|.-.+.+
T Consensus 351 iSNITAGnteqiqavid~nliPpLi~lls~a-e~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNk 429 (526)
T COG5064 351 ISNITAGNTEQIQAVIDANLIPPLIHLLSSA-EYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNK 429 (526)
T ss_pred ecccccCCHHHHHHHHhcccchHHHHHHHHH-HHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCcc
Confidence 9999999999999999999999999999999 999999999999999984 689999999999999999999998989
Q ss_pred HHHHHHHHHHHHhCCCCHHHHH
Q 014945 384 IKKEAAWAISNATSGGSNEQIK 405 (415)
Q Consensus 384 v~~~a~~aL~nl~~~~~~~~~~ 405 (415)
+-+.++.++.|+...|..+...
T Consensus 430 iiev~LD~~eniLk~Ge~d~~~ 451 (526)
T COG5064 430 IIEVALDAIENILKVGEQDRLR 451 (526)
T ss_pred chhhhHHHHHHHHhhhhHHHHh
Confidence 9999999999999887655443
No 5
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=4.5e-37 Score=318.63 Aligned_cols=333 Identities=21% Similarity=0.245 Sum_probs=285.8
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhh
Q 014945 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 150 (415)
Q Consensus 71 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~ 150 (415)
|.+|.++..|.++++..+..|+.++.+++... .++...+++.|++|.|+++|++++++.+|..|+|+|++|+.++++++
T Consensus 189 GaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~-ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r 267 (2102)
T PLN03200 189 GGVDILVKLLSSGNSDAQANAASLLARLMMAF-ESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAK 267 (2102)
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHHH
Confidence 78999999999999999999999998876653 45788899999999999999875537999999999999999999999
Q ss_pred HHHHhCCChHHHHHhhCCCC---------HHHHHHHHHHHHHhcCCCch-----------hHHH---HHhcCChHHHHHH
Q 014945 151 RVVIDHGAVPIFVRLLSSPT---------DDVREQAVWALGNVAGDSPK-----------CRDL---VLSNGALMPLLAQ 207 (415)
Q Consensus 151 ~~~~~~g~i~~L~~ll~~~~---------~~v~~~a~~~L~nl~~~~~~-----------~~~~---~~~~g~i~~L~~~ 207 (415)
..+++.|++|.|++++.+++ ..++++|+|+|+|||++.+. .++. ....|++.+++..
T Consensus 268 ~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALayll~l 347 (2102)
T PLN03200 268 QAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRSPAPIADTLGALAYALMV 347 (2102)
T ss_pred HHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHHHHHh
Confidence 99999999999999998654 34699999999999987543 2222 2345778888888
Q ss_pred hccchhHhHH----HHHHHHHHHhhhCC-CCCchhh-------------------hhchHHHHHHhhcCCChhHHHHHHH
Q 014945 208 FNEHAKLSML----RNATWTLSNFCRGK-PQPLFEQ-------------------TRPALPALERLIHSNDDEVLTDACW 263 (415)
Q Consensus 208 l~~~~~~~~~----~~a~~~l~~l~~~~-~~~~~~~-------------------~~~~l~~l~~lL~~~d~~v~~~a~~ 263 (415)
+ +..+...+ ..++|+|.+|++++ +...... ..++++.|+.+|...+.+++..++|
T Consensus 348 ~-d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~ 426 (2102)
T PLN03200 348 F-DSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELIR 426 (2102)
T ss_pred c-CCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHHH
Confidence 7 44433333 36789999999987 3332211 1356678889999999999999999
Q ss_pred HHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchH
Q 014945 264 ALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIK 343 (415)
Q Consensus 264 ~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~ 343 (415)
+|.+++.++.+..+.+.+.|+++.|+++|.+++..++..|++++++++.++++++..++++|++|.|+++|.++ ++.++
T Consensus 427 aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~-~~~iq 505 (2102)
T PLN03200 427 ALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETG-SQKAK 505 (2102)
T ss_pred HHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC-CHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHH-HcCCHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCHHHHHHH
Q 014945 344 KEACWTISNITAGNVNQIQAII-EAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKYK 407 (415)
Q Consensus 344 ~~a~~~l~nl~~~~~~~~~~l~-~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l 407 (415)
++|+|+|+|++.++++ ++.++ +.|+++.|+++|+++++++++.|+|+|.|++..++.+++..+
T Consensus 506 eeAawAL~NLa~~~~q-ir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~L 569 (2102)
T PLN03200 506 EDSATVLWNLCCHSED-IRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQL 569 (2102)
T ss_pred HHHHHHHHHHhCCcHH-HHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHH
Confidence 9999999999996544 45555 789999999999999999999999999999988888777665
No 6
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=2e-34 Score=299.06 Aligned_cols=336 Identities=18% Similarity=0.193 Sum_probs=299.3
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhh
Q 014945 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 150 (415)
Q Consensus 71 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~ 150 (415)
++++.|+.+|...+.+.|..+++.|+.+...+ .+..+.+.+.|++|.|+++|.+++ ..+|..|+|+|++++.++++++
T Consensus 404 daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~-~e~~~aIi~~ggIp~LV~LL~s~s-~~iQ~~A~~~L~nLa~~ndenr 481 (2102)
T PLN03200 404 EAKKVLVGLITMATADVQEELIRALSSLCCGK-GGLWEALGGREGVQLLISLLGLSS-EQQQEYAVALLAILTDEVDESK 481 (2102)
T ss_pred cchhhhhhhhccCCHHHHHHHHHHHHHHhCCC-HHHHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCHHHH
Confidence 56788999999999999999999999997664 677888999999999999999988 9999999999999999888999
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhC
Q 014945 151 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 230 (415)
Q Consensus 151 ~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~ 230 (415)
..+++.|++|.|+++|.+++..+++.|+|+|+|++.+++..+..+...|++++|+.+| ++.+...+..++|+|.+++..
T Consensus 482 ~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL-~sgd~~~q~~Aa~AL~nLi~~ 560 (2102)
T PLN03200 482 WAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLL-KNGGPKGQEIAAKTLTKLVRT 560 (2102)
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999998888888888899999999999 667889999999999999753
Q ss_pred CCCCc-------------------------------h-------hhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCC
Q 014945 231 KPQPL-------------------------------F-------EQTRPALPALERLIHSNDDEVLTDACWALSYLSDGT 272 (415)
Q Consensus 231 ~~~~~-------------------------------~-------~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~ 272 (415)
..... . ....+++|.|+.+++++++.++..|+|+|.+++.+.
T Consensus 561 ~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~ 640 (2102)
T PLN03200 561 ADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSR 640 (2102)
T ss_pred cchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC
Confidence 21110 0 002468999999999999999999999999999999
Q ss_pred hHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCCh-HHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHH
Q 014945 273 NDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD-MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTIS 351 (415)
Q Consensus 273 ~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~-~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~ 351 (415)
.+..+.++..|++++++.+|.+.+..++..++|+|+|++.+.. .+...+++.|++++|+++++++ +..++..|+.+|.
T Consensus 641 ~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~-d~~v~e~Al~ALa 719 (2102)
T PLN03200 641 QDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSS-SIEVAEQAVCALA 719 (2102)
T ss_pred hHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCC-ChHHHHHHHHHHH
Confidence 8888899999999999999999999999999999999997544 4556778999999999999998 9999999999999
Q ss_pred HHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCHHH-H-HHHHHHhhCC
Q 014945 352 NITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQ-I-KYKFFYVSRT 414 (415)
Q Consensus 352 nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~-~-~~l~~~~~~g 414 (415)
|++.. ++....+.+.|+++.|+++|++++++.|+.|+|+|.+++.+++.++ + .++ ...|
T Consensus 720 nLl~~-~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~---~~~g 780 (2102)
T PLN03200 720 NLLSD-PEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSV---QCRG 780 (2102)
T ss_pred HHHcC-chHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHH---HHhC
Confidence 99986 3456778889999999999999999999999999999999988666 4 555 4555
No 7
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=8.8e-28 Score=205.56 Aligned_cols=323 Identities=20% Similarity=0.321 Sum_probs=283.6
Q ss_pred hhccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCch
Q 014945 69 KLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSE 148 (415)
Q Consensus 69 ~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~ 148 (415)
..|++..+.++-++.|..+|..+..+|.++... .++.+.++..|++|.|+.++++++ .++|+.+..++++|+.+ ..
T Consensus 165 ~sGaL~pltrLakskdirvqrnatgaLlnmThs--~EnRr~LV~aG~lpvLVsll~s~d-~dvqyycttaisnIaVd-~~ 240 (550)
T KOG4224|consen 165 RSGALEPLTRLAKSKDIRVQRNATGALLNMTHS--RENRRVLVHAGGLPVLVSLLKSGD-LDVQYYCTTAISNIAVD-RR 240 (550)
T ss_pred hccchhhhHhhcccchhhHHHHHHHHHHHhhhh--hhhhhhhhccCCchhhhhhhccCC-hhHHHHHHHHhhhhhhh-HH
Confidence 347888999988899999999999999998653 578889999999999999999999 99999999999999985 77
Q ss_pred hhHHHHhCC--ChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHH
Q 014945 149 NTRVVIDHG--AVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSN 226 (415)
Q Consensus 149 ~~~~~~~~g--~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~ 226 (415)
.++.+.+.+ .+|.|+.++.+++++++.+|..+|+|++.+.. ++..+.+.|.+|.++.++ +++..+..-....|+.|
T Consensus 241 ~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~-Yq~eiv~ag~lP~lv~Ll-qs~~~plilasVaCIrn 318 (550)
T KOG4224|consen 241 ARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTE-YQREIVEAGSLPLLVELL-QSPMGPLILASVACIRN 318 (550)
T ss_pred HHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccch-hhhHHHhcCCchHHHHHH-hCcchhHHHHHHHHHhh
Confidence 888888887 99999999999999999999999999998877 567888999999999999 77777777788889999
Q ss_pred hhhCCCCCchhhhhchHHHHHHhhcCCC-hhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHH
Q 014945 227 FCRGKPQPLFEQTRPALPALERLIHSND-DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR 305 (415)
Q Consensus 227 l~~~~~~~~~~~~~~~l~~l~~lL~~~d-~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~ 305 (415)
++-++-........|++..|+.+|...| ++++..|..++.+|+.........+.++|.++.+..++.+....++...-.
T Consensus 319 isihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisa 398 (550)
T KOG4224|consen 319 ISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISA 398 (550)
T ss_pred cccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHH
Confidence 9988766666667899999999998875 559999999999999877777788999999999999999999999999999
Q ss_pred HHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHH------cCCHHHHHHHhcc
Q 014945 306 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE------AGIIGPLVNLLLN 379 (415)
Q Consensus 306 ~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~------~~~i~~L~~~l~~ 379 (415)
+++.++... .....+.+.|++|.|+.+..+. +.+++..|+-+|.|++..-.+ -..+++ .|+-..|.+++.+
T Consensus 399 c~a~Lal~d-~~k~~lld~gi~~iLIp~t~s~-s~Ev~gNaAaAL~Nlss~v~~-YarviEawd~P~~gi~g~L~Rfl~S 475 (550)
T KOG4224|consen 399 CIAQLALND-NDKEALLDSGIIPILIPWTGSE-SEEVRGNAAAALINLSSDVEH-YARVIEAWDHPVQGIQGRLARFLAS 475 (550)
T ss_pred HHHHHHhcc-ccHHHHhhcCCcceeecccCcc-chhhcccHHHHHHhhhhhhHH-HHHHHHHhcCcchhHHHHHHHHHhh
Confidence 999998754 4677899999999999999998 999999999999999984222 233332 4566789999999
Q ss_pred CCHHHHHHHHHHHHHHhCCCC
Q 014945 380 AEFEIKKEAAWAISNATSGGS 400 (415)
Q Consensus 380 ~~~~v~~~a~~aL~nl~~~~~ 400 (415)
.+..++..|.|++..++...+
T Consensus 476 ~~~tf~hia~wTI~qLle~h~ 496 (550)
T KOG4224|consen 476 HELTFRHIARWTIQQLLEDHD 496 (550)
T ss_pred hHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999997654
No 8
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=5.1e-28 Score=206.97 Aligned_cols=320 Identities=23% Similarity=0.289 Sum_probs=282.3
Q ss_pred hccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchh
Q 014945 70 LESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN 149 (415)
Q Consensus 70 ~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~ 149 (415)
+.++..|+..+.++..++|..++.++.+++.. ......+..+|.+..+.++-++.+ ..+|..+..+|.++... .++
T Consensus 125 l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~--d~nk~kiA~sGaL~pltrLakskd-irvqrnatgaLlnmThs-~En 200 (550)
T KOG4224|consen 125 LLGLDLLILQMMTDGVEVQCNAVGCITNLATF--DSNKVKIARSGALEPLTRLAKSKD-IRVQRNATGALLNMTHS-REN 200 (550)
T ss_pred ccChHHHHHHhcCCCcEEEeeehhhhhhhhcc--ccchhhhhhccchhhhHhhcccch-hhHHHHHHHHHHHhhhh-hhh
Confidence 46788888888888888999999999999875 355567889999999999888888 89999999999999984 899
Q ss_pred hHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcC--ChHHHHHHhccchhHhHHHHHHHHHHHh
Q 014945 150 TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNG--ALMPLLAQFNEHAKLSMLRNATWTLSNF 227 (415)
Q Consensus 150 ~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g--~i~~L~~~l~~~~~~~~~~~a~~~l~~l 227 (415)
++.++..|++|.|+.++.+.+..++..|+.+++||+.+.. .|..+.+.+ .++.|++++ ++.+..++..|..+|.++
T Consensus 201 Rr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~-~Rk~Laqaep~lv~~Lv~Lm-d~~s~kvkcqA~lALrnl 278 (550)
T KOG4224|consen 201 RRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRR-ARKILAQAEPKLVPALVDLM-DDGSDKVKCQAGLALRNL 278 (550)
T ss_pred hhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHH-HHHHHHhcccchHHHHHHHH-hCCChHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999998876 578888888 899999999 888999999999999999
Q ss_pred hhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCC-hhhHHHHHHH
Q 014945 228 CRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPS-PSVLIPALRT 306 (415)
Q Consensus 228 ~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~-~~v~~~a~~~ 306 (415)
+....-.......+.+|.++++|+++-.........++.|++.++-.. -.+++.|++.+|+.+|...+ +.++..|..+
T Consensus 279 asdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe-~lI~dagfl~pLVrlL~~~dnEeiqchAvst 357 (550)
T KOG4224|consen 279 ASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNE-VLIADAGFLRPLVRLLRAGDNEEIQCHAVST 357 (550)
T ss_pred cccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcc-cceecccchhHHHHHHhcCCchhhhhhHHHH
Confidence 987543344455899999999999988777788889999998766543 45788999999999998765 5599999999
Q ss_pred HHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHH
Q 014945 307 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKK 386 (415)
Q Consensus 307 l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~ 386 (415)
|.|++.........+++.|.+|.+..++.++ ...++.+...+++.++-. ......+.+.|++|.|+.+..+.+.+++.
T Consensus 358 LrnLAasse~n~~~i~esgAi~kl~eL~lD~-pvsvqseisac~a~Lal~-d~~k~~lld~gi~~iLIp~t~s~s~Ev~g 435 (550)
T KOG4224|consen 358 LRNLAASSEHNVSVIRESGAIPKLIELLLDG-PVSVQSEISACIAQLALN-DNDKEALLDSGIIPILIPWTGSESEEVRG 435 (550)
T ss_pred HHHHhhhhhhhhHHHhhcCchHHHHHHHhcC-ChhHHHHHHHHHHHHHhc-cccHHHHhhcCCcceeecccCccchhhcc
Confidence 9999998888999999999999999999999 889999999999988864 33467889999999999999999999999
Q ss_pred HHHHHHHHHhCC
Q 014945 387 EAAWAISNATSG 398 (415)
Q Consensus 387 ~a~~aL~nl~~~ 398 (415)
+|+.||.|++..
T Consensus 436 NaAaAL~Nlss~ 447 (550)
T KOG4224|consen 436 NAAAALINLSSD 447 (550)
T ss_pred cHHHHHHhhhhh
Confidence 999999999965
No 9
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.91 E-value=9.8e-21 Score=182.91 Aligned_cols=320 Identities=19% Similarity=0.264 Sum_probs=259.6
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhh
Q 014945 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 150 (415)
Q Consensus 71 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~ 150 (415)
+.++.|++.|.+++.++...++..|.++... .++...+.+.|+++.|.+++.+++ .+++..++++|.|++.+ ++.+
T Consensus 290 ~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~--~ENK~~m~~~giV~kL~kLl~s~~-~~l~~~aLrlL~NLSfd-~~~R 365 (708)
T PF05804_consen 290 GIVSLLVKCLDRENEELLILAVTFLKKLSIF--KENKDEMAESGIVEKLLKLLPSEN-EDLVNVALRLLFNLSFD-PELR 365 (708)
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC--HHHHHHHHHcCCHHHHHHHhcCCC-HHHHHHHHHHHHHhCcC-HHHH
Confidence 7899999999999999999999999998543 567888999999999999999988 89999999999999996 8899
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhC
Q 014945 151 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 230 (415)
Q Consensus 151 ~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~ 230 (415)
..+++.|++|.|+.+|.++ ..+..|+.+|++++.+.. .|..+...++++.+++++...++..+...+++++.|++..
T Consensus 366 ~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd~-~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~ 442 (708)
T PF05804_consen 366 SQMVSLGLIPKLVELLKDP--NFREVALKILYNLSMDDE-ARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALN 442 (708)
T ss_pred HHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccCHh-hHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcC
Confidence 9999999999999999864 456779999999998775 7889999999999999885655555555566666665544
Q ss_pred CCCCch-------------------------------------hhhhchHHHHHHhhcC-CChhHHHHHHHHHHHhccCC
Q 014945 231 KPQPLF-------------------------------------EQTRPALPALERLIHS-NDDEVLTDACWALSYLSDGT 272 (415)
Q Consensus 231 ~~~~~~-------------------------------------~~~~~~l~~l~~lL~~-~d~~v~~~a~~~l~~l~~~~ 272 (415)
...... ....+.+..|+..+.. ++++....++.+++|+...+
T Consensus 443 ~rnaqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ 522 (708)
T PF05804_consen 443 KRNAQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPD 522 (708)
T ss_pred HHHHHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCC
Confidence 321111 1122344444445544 46788999999999998766
Q ss_pred hHHHHHHHHcCcHHHHHHhcCCC--ChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCC-CccchHHHHHHH
Q 014945 273 NDKIQAVIEAGVCPRLVELLRHP--SPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN-YKKSIKKEACWT 349 (415)
Q Consensus 273 ~~~~~~~~~~~~i~~L~~lL~~~--~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~~v~~~a~~~ 349 (415)
.+....+-+.+++|.|...|..+ ++++...++..+|.++. .+.....+.+.|+++.|+.++... +|.++.-..+++
T Consensus 523 ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~-d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~ 601 (708)
T PF05804_consen 523 LDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS-DPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYV 601 (708)
T ss_pred cCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC-CHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHH
Confidence 56656555679999999999644 45788899999999996 455777788999999999999765 267899999999
Q ss_pred HHHHhcCCHHHHHHHH-HcCCHHHHHHHhccCCHHHHHHHHHHHHHHhCCC
Q 014945 350 ISNITAGNVNQIQAII-EAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG 399 (415)
Q Consensus 350 l~nl~~~~~~~~~~l~-~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~~ 399 (415)
+.++..+. +.+..++ +.+++..|++++++.++.+++.|-.+|--++...
T Consensus 602 f~~ll~h~-~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d 651 (708)
T PF05804_consen 602 FYQLLFHE-ETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYD 651 (708)
T ss_pred HHHHHcCh-HHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhC
Confidence 99999974 4566666 4789999999999999999999999998888763
No 10
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.88 E-value=1.9e-19 Score=174.00 Aligned_cols=315 Identities=18% Similarity=0.201 Sum_probs=251.1
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHH
Q 014945 75 AMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVI 154 (415)
Q Consensus 75 ~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~ 154 (415)
.+-.++..++ .+..-+...|.+++.. ......+.+.|+++.|+++|++++ .++...++++|.+++.. .+++..+.
T Consensus 254 k~~~l~~kQe-qLlrv~~~lLlNLAed--~~ve~kM~~~~iV~~Lv~~Ldr~n-~ellil~v~fLkkLSi~-~ENK~~m~ 328 (708)
T PF05804_consen 254 KLQTLIRKQE-QLLRVAFYLLLNLAED--PRVELKMVNKGIVSLLVKCLDREN-EELLILAVTFLKKLSIF-KENKDEMA 328 (708)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHhcC--hHHHHHHHhcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHcCC-HHHHHHHH
Confidence 3334444443 3445677888898642 355566889999999999999988 89999999999999985 78999999
Q ss_pred hCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCC
Q 014945 155 DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQP 234 (415)
Q Consensus 155 ~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~ 234 (415)
+.|+++.|.+++.+++..++..++++|.|++.+.. .|..+++.|++|.|+.+|. + +..+..++.+|.++|..+...
T Consensus 329 ~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~-~R~~mV~~GlIPkLv~LL~-d--~~~~~val~iLy~LS~dd~~r 404 (708)
T PF05804_consen 329 ESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPE-LRSQMVSLGLIPKLVELLK-D--PNFREVALKILYNLSMDDEAR 404 (708)
T ss_pred HcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHH-HHHHHHHCCCcHHHHHHhC-C--CchHHHHHHHHHHhccCHhhH
Confidence 99999999999999999999999999999998876 6899999999999999994 3 345567899999999987666
Q ss_pred chhhhhchHHHHHHhhcC-CChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHH-----------------------
Q 014945 235 LFEQTRPALPALERLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVE----------------------- 290 (415)
Q Consensus 235 ~~~~~~~~l~~l~~lL~~-~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~----------------------- 290 (415)
......+++|.+++++.+ +++.+...+++++.|++..... .+.+.+.|+++.|+.
T Consensus 405 ~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rn-aqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~ 483 (708)
T PF05804_consen 405 SMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRN-AQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGP 483 (708)
T ss_pred HHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHH-HHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCch
Confidence 666667899999987644 5666777777888887765543 355555455544333
Q ss_pred --------------hcCC-CChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCC-CccchHHHHHHHHHHHh
Q 014945 291 --------------LLRH-PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN-YKKSIKKEACWTISNIT 354 (415)
Q Consensus 291 --------------lL~~-~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~~v~~~a~~~l~nl~ 354 (415)
.+.. ++++....++++|+|+...+....+.+.+.+++|.+...|..+ ..+++.-+++..++.++
T Consensus 484 ~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla 563 (708)
T PF05804_consen 484 LKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLA 563 (708)
T ss_pred HHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHH
Confidence 3322 3567888999999999987666666666789999999999765 24579999999999998
Q ss_pred cCCHHHHHHHHHcCCHHHHHHHhcc--CCHHHHHHHHHHHHHHhCCCC
Q 014945 355 AGNVNQIQAIIEAGIIGPLVNLLLN--AEFEIKKEAAWAISNATSGGS 400 (415)
Q Consensus 355 ~~~~~~~~~l~~~~~i~~L~~~l~~--~~~~v~~~a~~aL~nl~~~~~ 400 (415)
. ++.....+.+.|+++.|+.+|.. .|.+.....++++..+..+..
T Consensus 564 ~-d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~ 610 (708)
T PF05804_consen 564 S-DPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEE 610 (708)
T ss_pred C-CHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChH
Confidence 6 56777788899999999999986 668899999999999998853
No 11
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=3.5e-17 Score=154.47 Aligned_cols=331 Identities=20% Similarity=0.300 Sum_probs=266.0
Q ss_pred cHHHHHHhhcCC-CHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhh
Q 014945 72 SLPAMVAGVWSD-DRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 150 (415)
Q Consensus 72 ~i~~l~~~l~~~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~ 150 (415)
.+.+|++.|+.. |+..|.+|+..++.+++....+....+--.-++|.|+.+|++..+.++...|+++|++++..-|...
T Consensus 168 k~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~ 247 (1051)
T KOG0168|consen 168 KAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSS 247 (1051)
T ss_pred HHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchh
Confidence 467889999865 9999999999999998876555555555566899999999998889999999999999999999999
Q ss_pred HHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhh
Q 014945 151 RVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 229 (415)
Q Consensus 151 ~~~~~~g~i~~L~~ll~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~ 229 (415)
..+++.++||.|+.-|.. ....+.++++.+|-.|+...+ ..+++.|++...+..| +--+..+++.|+.+.+|.|.
T Consensus 248 a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~---~AiL~AG~l~a~Lsyl-DFFSi~aQR~AlaiaaN~Ck 323 (1051)
T KOG0168|consen 248 AIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP---KAILQAGALSAVLSYL-DFFSIHAQRVALAIAANCCK 323 (1051)
T ss_pred heeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc---HHHHhcccHHHHHHHH-HHHHHHHHHHHHHHHHHHHh
Confidence 999999999999986554 678899999999999998887 4788999999999998 77788999999999999999
Q ss_pred CCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccC---ChHHHHHHHHcCcHHHHHHhcCCCC----hhhHHH
Q 014945 230 GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDG---TNDKIQAVIEAGVCPRLVELLRHPS----PSVLIP 302 (415)
Q Consensus 230 ~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~---~~~~~~~~~~~~~i~~L~~lL~~~~----~~v~~~ 302 (415)
.-+...+..+...+|.|..+|++.|....+.+|-++.+++.+ .++..+.+...|++....++|.-.. ..+...
T Consensus 324 si~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~ 403 (1051)
T KOG0168|consen 324 SIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTG 403 (1051)
T ss_pred cCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhH
Confidence 988888889999999999999999999999999999999754 5577788999999999999986442 346677
Q ss_pred HHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCc-------------cc-hHHHHH---------------------
Q 014945 303 ALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYK-------------KS-IKKEAC--------------------- 347 (415)
Q Consensus 303 a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~-------------~~-v~~~a~--------------------- 347 (415)
.++.+..++.+.+-....+...++...+..+|..... |. +....+
T Consensus 404 vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~nas~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~~~~ 483 (1051)
T KOG0168|consen 404 VIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSANASLHELLSRSPNELYELTSLIIELLPCLPVEGIFAVDCSL 483 (1051)
T ss_pred HHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCcCcccccccccccCcHHHHHHHHHHheeecCCcccceeehhhhh
Confidence 8888999999888777777777777777777643210 00 000000
Q ss_pred ------------------------------HHHH-------------H---------HhcCCHHHHHHHHHcCCHHHHHH
Q 014945 348 ------------------------------WTIS-------------N---------ITAGNVNQIQAIIEAGIIGPLVN 375 (415)
Q Consensus 348 ------------------------------~~l~-------------n---------l~~~~~~~~~~l~~~~~i~~L~~ 375 (415)
..+. + +....|+-.+.++.. ++|.|++
T Consensus 484 ~~~~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~~t~~~~~dkl~~~~r~~~l~nqpel~q~F~~~-llpVLve 562 (1051)
T KOG0168|consen 484 IYEIVNLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDTGTSRKQQDKLNGSAREGLLKNQPELLQSFGKD-LLPVLVE 562 (1051)
T ss_pred hcccccccccccccCccccccccccchhhhhhhhhhccCcccchhhhhhcCCchhhhhhhcCHHHHHHHHHH-HHHHHHH
Confidence 0001 0 001122333333333 7899999
Q ss_pred Hhcc-CCHHHHHHHHHHHHHHhCCCCHHHHHHH
Q 014945 376 LLLN-AEFEIKKEAAWAISNATSGGSNEQIKYK 407 (415)
Q Consensus 376 ~l~~-~~~~v~~~a~~aL~nl~~~~~~~~~~~l 407 (415)
++.+ .++.||..++.||..+....+.+.|..+
T Consensus 563 VYsSsA~~~VR~kcL~Ailrlvy~s~seli~sl 595 (1051)
T KOG0168|consen 563 VYSSSANPDVRYKCLSAILRLVYFSNSELIGSL 595 (1051)
T ss_pred HHhccCCchhhHHHHHHHHHHHhhCCHHHHHHH
Confidence 9886 6799999999999999999999988877
No 12
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.77 E-value=9.6e-16 Score=130.83 Aligned_cols=311 Identities=12% Similarity=0.124 Sum_probs=250.1
Q ss_pred cCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCC-CChHHHHHHHHHHHHHhCCCchhhHHHHhCCCh
Q 014945 81 WSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRD-DFPQLQFEAAWALTNIASGTSENTRVVIDHGAV 159 (415)
Q Consensus 81 ~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i 159 (415)
.+++....+.++.+|..+..+ ...+.+..++..++.+|... ++.++....+.++..-+..+..+++.+++.+++
T Consensus 117 ~~~~~~~l~ksL~al~~lt~~-----qpdl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il 191 (461)
T KOG4199|consen 117 ESPNESVLKKSLEAINSLTHK-----QPDLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKIL 191 (461)
T ss_pred hCCchhHHHHHHHHHHHhhcC-----CcchhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHH
Confidence 356666777777777766432 24566777888999988753 237888888889999888889999999999999
Q ss_pred HHHHHhhCC-CCHHHHHHHHHHHHHhcCCCc---------hhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhh
Q 014945 160 PIFVRLLSS-PTDDVREQAVWALGNVAGDSP---------KCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 229 (415)
Q Consensus 160 ~~L~~ll~~-~~~~v~~~a~~~L~nl~~~~~---------~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~ 229 (415)
+.+...|.. ....+...+.|++.-+..++. .....+...|++..|+..+.-..++.+...++.+|..|+-
T Consensus 192 ~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAV 271 (461)
T KOG4199|consen 192 ELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAV 271 (461)
T ss_pred HHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHH
Confidence 999977665 445688899999999886653 2346677888899999999666789999999999999987
Q ss_pred CCCCCchhhhhchHHHHHHhhcCC-Chh---HHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhc--CCCChhhHHHH
Q 014945 230 GKPQPLFEQTRPALPALERLIHSN-DDE---VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL--RHPSPSVLIPA 303 (415)
Q Consensus 230 ~~~~~~~~~~~~~l~~l~~lL~~~-d~~---v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL--~~~~~~v~~~a 303 (415)
.+.-.......|++..++.++.+. +.. ....++..|..++..++ ....+++.|+.+.++.++ .+++|.+...+
T Consensus 272 r~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~Ds-vKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~ 350 (461)
T KOG4199|consen 272 RDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDS-VKSTIVEKGGLDKIITLALRHSDDPLVIQEV 350 (461)
T ss_pred HHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCc-hHHHHHHhcChHHHHHHHHHcCCChHHHHHH
Confidence 765555666789999999999874 333 45677888888876554 457799999999999997 35688999999
Q ss_pred HHHHHHhhcCChHHHHHHHHCCChHHHHHHhc-CCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCH
Q 014945 304 LRTVGNIVTGDDMQTQCIINHQALPCLLDLLT-QNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEF 382 (415)
Q Consensus 304 ~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~-~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~ 382 (415)
+.+++-++-..++....+++.|+-...++.++ ++....+++.|||.+.|++..+.++...++.. +++.|+......++
T Consensus 351 ~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~-GiE~Li~~A~~~h~ 429 (461)
T KOG4199|consen 351 MAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLAN-GIEKLIRTAKANHE 429 (461)
T ss_pred HHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhc-cHHHHHHHHHhcCc
Confidence 99999999999989999999999998888775 44456899999999999999888888888777 67888888888889
Q ss_pred HHHHHHHHHHHHHhCC
Q 014945 383 EIKKEAAWAISNATSG 398 (415)
Q Consensus 383 ~v~~~a~~aL~nl~~~ 398 (415)
.+...|..||..+-.+
T Consensus 430 tce~~akaALRDLGc~ 445 (461)
T KOG4199|consen 430 TCEAAAKAALRDLGCD 445 (461)
T ss_pred cHHHHHHHHHHhcCcc
Confidence 9999999999888644
No 13
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.75 E-value=4e-16 Score=147.80 Aligned_cols=321 Identities=25% Similarity=0.288 Sum_probs=244.7
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCch--
Q 014945 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSE-- 148 (415)
Q Consensus 71 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~-- 148 (415)
-.+|+.+.+|.++++..|-.|+..+..+..+. +.....+.+.|+|+.|+.+|.+.. .+++.+|+++|.|+..++..
T Consensus 233 ~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd-~~ik~~vrqlggI~kLv~Ll~~~~-~evq~~acgaLRNLvf~~~~~~ 310 (717)
T KOG1048|consen 233 PTLPEVISMLMSQDPSVQSNAAAYLQHLCFGD-NKIKSRVRQLGGIPKLVALLDHRN-DEVQRQACGALRNLVFGKSTDS 310 (717)
T ss_pred cccHHHHHHHhccChhhhHHHHHHHHHHHhhh-HHHHHHHHHhccHHHHHHHhcCCc-HHHHHHHHHHHHhhhcccCCcc
Confidence 46899999999999999999999998885543 555566778999999999999999 99999999999999997766
Q ss_pred hhHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhcc-c------------hhH
Q 014945 149 NTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE-H------------AKL 214 (415)
Q Consensus 149 ~~~~~~~~g~i~~L~~ll~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~-~------------~~~ 214 (415)
++-.+.+.++++.++++|.. .|.++++.+..+|+||+..+. ++..++. ..+..|...+.. . .+.
T Consensus 311 NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~-lK~~ii~-~al~tLt~~vI~P~Sgw~~~~~~~~~~~~ 388 (717)
T KOG1048|consen 311 NKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDA-LKMLIIT-SALSTLTDNVIIPHSGWEEEPAPRKAEDS 388 (717)
T ss_pred cchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhH-HHHHHHH-HHHHHHHHhhcccccccCCCCcccccccc
Confidence 88889999999999999997 789999999999999998844 5555544 366666655421 1 135
Q ss_pred hHHHHHHHHHHHhhhCCC-CC-chhhhhchHHHHHHhhc-----------------------------------------
Q 014945 215 SMLRNATWTLSNFCRGKP-QP-LFEQTRPALPALERLIH----------------------------------------- 251 (415)
Q Consensus 215 ~~~~~a~~~l~~l~~~~~-~~-~~~~~~~~l~~l~~lL~----------------------------------------- 251 (415)
++..+++.+|.|++.... .. .+....|++..|+..++
T Consensus 389 ~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~ 468 (717)
T KOG1048|consen 389 TVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLAN 468 (717)
T ss_pred eeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhc
Confidence 677888888888875321 11 11111222333222221
Q ss_pred -------------------------------------------------------------CCChhHHHHHHHHHHHhcc
Q 014945 252 -------------------------------------------------------------SNDDEVLTDACWALSYLSD 270 (415)
Q Consensus 252 -------------------------------------------------------------~~d~~v~~~a~~~l~~l~~ 270 (415)
+.++.+.+.++.+|.|++.
T Consensus 469 ~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA 548 (717)
T KOG1048|consen 469 IARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTA 548 (717)
T ss_pred ccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhc
Confidence 1234455666777777765
Q ss_pred CCh----HHHHHH-HHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCc-----c
Q 014945 271 GTN----DKIQAV-IEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYK-----K 340 (415)
Q Consensus 271 ~~~----~~~~~~-~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~-----~ 340 (415)
+.. .....+ ..+.+++.|+++|..++..+...++.+|.|++.+.. .+.++..++++.|+..|..... .
T Consensus 549 ~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~r--nk~ligk~a~~~lv~~Lp~~~~~~~~se 626 (717)
T KOG1048|consen 549 GLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIR--NKELIGKYAIPDLVRCLPGSGPSTSLSE 626 (717)
T ss_pred cCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCch--hhhhhhcchHHHHHHhCcCCCCCcCchH
Confidence 432 111222 456788999999999999999999999999998543 4556778999999999966533 6
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhcc-CCHHHHHHHHHHHHHHhC
Q 014945 341 SIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN-AEFEIKKEAAWAISNATS 397 (415)
Q Consensus 341 ~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~-~~~~v~~~a~~aL~nl~~ 397 (415)
++...+|.+|.|+...+..+...+.+.+.++.|+.+..+ .++++.+.|...|..+=.
T Consensus 627 dtv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~ 684 (717)
T KOG1048|consen 627 DTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQ 684 (717)
T ss_pred HHHHHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 788999999999999999999999999999999999887 457899999888888753
No 14
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.75 E-value=2.1e-15 Score=144.56 Aligned_cols=316 Identities=19% Similarity=0.241 Sum_probs=246.4
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHH
Q 014945 74 PAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVV 153 (415)
Q Consensus 74 ~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~ 153 (415)
+.++..|++++.+....++.+|..++... .+ ..+ ..+..+.|...|.+++ +.+|..+++.+++++.++......+
T Consensus 41 ~~lf~~L~~~~~e~v~~~~~iL~~~l~~~--~~-~~l-~~~~~~~L~~gL~h~~-~~Vr~l~l~~l~~~~~~~~~~~~~~ 115 (503)
T PF10508_consen 41 PVLFDCLNTSNREQVELICDILKRLLSAL--SP-DSL-LPQYQPFLQRGLTHPS-PKVRRLALKQLGRIARHSEGAAQLL 115 (503)
T ss_pred HHHHHHHhhcChHHHHHHHHHHHHHHhcc--CH-HHH-HHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHhcCCHHHHHHh
Confidence 34788888888888888889999998643 22 222 4567899999999998 9999999999999999877777888
Q ss_pred HhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCC
Q 014945 154 IDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQ 233 (415)
Q Consensus 154 ~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~ 233 (415)
.+.++++.++.++.+++..+...|+.+|.+++...+.. +.++..+.+..|..++ ...+..++..+.+++.+++...+.
T Consensus 116 ~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~-~~l~~~~~~~~L~~l~-~~~~~~vR~Rv~el~v~i~~~S~~ 193 (503)
T PF10508_consen 116 VDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGL-EQLFDSNLLSKLKSLM-SQSSDIVRCRVYELLVEIASHSPE 193 (503)
T ss_pred cCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhH-HHHhCcchHHHHHHHH-hccCHHHHHHHHHHHHHHHhcCHH
Confidence 88999999999999999999999999999999887754 5677878888888888 555667888899999999877532
Q ss_pred -CchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCCh-----hhHH-HHHHH
Q 014945 234 -PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSP-----SVLI-PALRT 306 (415)
Q Consensus 234 -~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~-----~v~~-~a~~~ 306 (415)
.......|+++.++..+.++|.-++.+++.++..++. .+...+.+.+.|+++.|..++.+.+. .+.. ..+..
T Consensus 194 ~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f 272 (503)
T PF10508_consen 194 AAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKF 272 (503)
T ss_pred HHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHH
Confidence 2333446899999999999999999999999999998 44556889999999999999964422 2233 34478
Q ss_pred HHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHH-HHcC-----CHHHHHHHhccC
Q 014945 307 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAI-IEAG-----IIGPLVNLLLNA 380 (415)
Q Consensus 307 l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l-~~~~-----~i~~L~~~l~~~ 380 (415)
.|+++...+....... ..++..+..++.+. ++..+..|.-+++.|+.. .+....+ ...+ ++..+.....++
T Consensus 273 ~g~la~~~~~~v~~~~-p~~~~~l~~~~~s~-d~~~~~~A~dtlg~igst-~~G~~~L~~~~~~~~~~~l~~~~~~~~~~ 349 (503)
T PF10508_consen 273 FGNLARVSPQEVLELY-PAFLERLFSMLESQ-DPTIREVAFDTLGQIGST-VEGKQLLLQKQGPAMKHVLKAIGDAIKSG 349 (503)
T ss_pred HHHHHhcChHHHHHHH-HHHHHHHHHHhCCC-ChhHHHHHHHHHHHHhCC-HHHHHHHHhhcchHHHHHHHHHHHHhcCC
Confidence 8888885443332211 24566777777888 999999999999999964 4545555 3322 355555556667
Q ss_pred CHHHHHHHHHHHHHHhCCCC
Q 014945 381 EFEIKKEAAWAISNATSGGS 400 (415)
Q Consensus 381 ~~~v~~~a~~aL~nl~~~~~ 400 (415)
..++|..++.++.++...++
T Consensus 350 ~~~lk~r~l~al~~il~~~~ 369 (503)
T PF10508_consen 350 STELKLRALHALASILTSGT 369 (503)
T ss_pred chHHHHHHHHHHHHHHhcCC
Confidence 88999999999999976554
No 15
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.74 E-value=9.9e-15 Score=139.88 Aligned_cols=320 Identities=19% Similarity=0.234 Sum_probs=250.1
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhH
Q 014945 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 151 (415)
Q Consensus 72 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~ 151 (415)
..+.+...|.++++.++..+++.+.+++... ....+.+.+.++++.++.++.+++ ..+...|+.+|.+++.. +....
T Consensus 78 ~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~-~~~~~~~~~~~l~~~i~~~L~~~d-~~Va~~A~~~L~~l~~~-~~~~~ 154 (503)
T PF10508_consen 78 YQPFLQRGLTHPSPKVRRLALKQLGRIARHS-EGAAQLLVDNELLPLIIQCLRDPD-LSVAKAAIKALKKLASH-PEGLE 154 (503)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC-HHHHHHhcCccHHHHHHHHHcCCc-HHHHHHHHHHHHHHhCC-chhHH
Confidence 4577888999999999999999999987543 344566778999999999999999 99999999999999985 55667
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCC
Q 014945 152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK 231 (415)
Q Consensus 152 ~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~ 231 (415)
.+++.+.++.|..++..+++.++-.+..++.+++..++.....+...|+++.++..+ +++|.-++.+++.++..|+..+
T Consensus 155 ~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL-~~dDiLvqlnalell~~La~~~ 233 (503)
T PF10508_consen 155 QLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKEL-DSDDILVQLNALELLSELAETP 233 (503)
T ss_pred HHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHh-cCccHHHHHHHHHHHHHHHcCh
Confidence 788888899999999888888999999999999999999999999999999999999 6689999999999999999976
Q ss_pred CCCchhhhhchHHHHHHhhcCC--Ch---h-HHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHH
Q 014945 232 PQPLFEQTRPALPALERLIHSN--DD---E-VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR 305 (415)
Q Consensus 232 ~~~~~~~~~~~l~~l~~lL~~~--d~---~-v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~ 305 (415)
....+....|+++.|..++.+. |+ . .....+...++++...+..+-... ..++..+..++.+.++..+..|+.
T Consensus 234 ~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~-p~~~~~l~~~~~s~d~~~~~~A~d 312 (503)
T PF10508_consen 234 HGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELY-PAFLERLFSMLESQDPTIREVAFD 312 (503)
T ss_pred hHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHH-HHHHHHHHHHhCCCChhHHHHHHH
Confidence 6667777789999999999654 23 1 233344677777765433322111 246677778888999999999999
Q ss_pred HHHHhhcCChHHHHHH-HHC-C----ChHHHHHHhcCCCccchHHHHHHHHHHHhcC-C---HHHHHHH----H---HcC
Q 014945 306 TVGNIVTGDDMQTQCI-INH-Q----ALPCLLDLLTQNYKKSIKKEACWTISNITAG-N---VNQIQAI----I---EAG 368 (415)
Q Consensus 306 ~l~nl~~~~~~~~~~~-~~~-~----~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~-~---~~~~~~l----~---~~~ 368 (415)
++|.++...+ ....+ ... + ++..+.....++ ..++|..+..+++++... . .+.+..+ . ..+
T Consensus 313 tlg~igst~~-G~~~L~~~~~~~~~~~l~~~~~~~~~~-~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~ 390 (503)
T PF10508_consen 313 TLGQIGSTVE-GKQLLLQKQGPAMKHVLKAIGDAIKSG-STELKLRALHALASILTSGTDRQDNDILSITESWYESLSGS 390 (503)
T ss_pred HHHHHhCCHH-HHHHHHhhcchHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCC
Confidence 9999997554 55545 333 2 344555555666 778999999999999642 1 2222222 1 223
Q ss_pred CHH-HHHHHhccCCHHHHHHHHHHHHHHhCC
Q 014945 369 IIG-PLVNLLLNAEFEIKKEAAWAISNATSG 398 (415)
Q Consensus 369 ~i~-~L~~~l~~~~~~v~~~a~~aL~nl~~~ 398 (415)
-.. .++.+++.+-+++|..+...|..++.+
T Consensus 391 ~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~ 421 (503)
T PF10508_consen 391 PLSNLLMSLLKQPFPELRCAAYRLLQALAAQ 421 (503)
T ss_pred chHHHHHHHhcCCchHHHHHHHHHHHHHhcC
Confidence 344 778888888899999999999998866
No 16
>PRK09687 putative lyase; Provisional
Probab=99.73 E-value=2.9e-15 Score=131.96 Aligned_cols=254 Identities=16% Similarity=0.125 Sum_probs=201.0
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhH
Q 014945 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 151 (415)
Q Consensus 72 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~ 151 (415)
.++.|++.|.+.|..++..++..|..+-. ..+++.+..++++++ +.+|..++++|+.+......
T Consensus 24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~~------------~~~~~~l~~ll~~~d-~~vR~~A~~aLg~lg~~~~~--- 87 (280)
T PRK09687 24 NDDELFRLLDDHNSLKRISSIRVLQLRGG------------QDVFRLAIELCSSKN-PIERDIGADILSQLGMAKRC--- 87 (280)
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHhcCc------------chHHHHHHHHHhCCC-HHHHHHHHHHHHhcCCCccc---
Confidence 56889999999999999999999988732 225678888888888 99999999999998753211
Q ss_pred HHHhCCChHHHHHh-hCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhC
Q 014945 152 VVIDHGAVPIFVRL-LSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 230 (415)
Q Consensus 152 ~~~~~g~i~~L~~l-l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~ 230 (415)
...+++.|..+ ++++++.|+..|+.+||+++...... ...++..+...+ .+.+..++..++++|..+..
T Consensus 88 ---~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-----~~~a~~~l~~~~-~D~~~~VR~~a~~aLg~~~~- 157 (280)
T PRK09687 88 ---QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY-----SPKIVEQSQITA-FDKSTNVRFAVAFALSVIND- 157 (280)
T ss_pred ---hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc-----chHHHHHHHHHh-hCCCHHHHHHHHHHHhccCC-
Confidence 11357778776 67789999999999999996443311 111344555666 66788999999999976542
Q ss_pred CCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHh
Q 014945 231 KPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI 310 (415)
Q Consensus 231 ~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl 310 (415)
...++.|+.+|.++++.|+..|+.+|+.+....+ .+++.|+..|.+.++.|+..|+++||.+
T Consensus 158 ---------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~~~~VR~~A~~aLg~~ 219 (280)
T PRK09687 158 ---------EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDKNEEIRIEAIIGLALR 219 (280)
T ss_pred ---------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCCChHHHHHHHHHHHcc
Confidence 3578999999999999999999999999843333 2457899999999999999999999996
Q ss_pred hcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhc-cCCHHHHHHHH
Q 014945 311 VTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL-NAEFEIKKEAA 389 (415)
Q Consensus 311 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~-~~~~~v~~~a~ 389 (415)
-. + .++|.|++.+.++ + ++..++.+|+++.. +. .+|.|..++. ++|.+++..|.
T Consensus 220 ~~--~---------~av~~Li~~L~~~-~--~~~~a~~ALg~ig~--~~---------a~p~L~~l~~~~~d~~v~~~a~ 274 (280)
T PRK09687 220 KD--K---------RVLSVLIKELKKG-T--VGDLIIEAAGELGD--KT---------LLPVLDTLLYKFDDNEIITKAI 274 (280)
T ss_pred CC--h---------hHHHHHHHHHcCC-c--hHHHHHHHHHhcCC--Hh---------HHHHHHHHHhhCCChhHHHHHH
Confidence 43 2 4688999999887 4 78899999999875 33 6889999997 78999999999
Q ss_pred HHHHH
Q 014945 390 WAISN 394 (415)
Q Consensus 390 ~aL~n 394 (415)
++|..
T Consensus 275 ~a~~~ 279 (280)
T PRK09687 275 DKLKR 279 (280)
T ss_pred HHHhc
Confidence 99863
No 17
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.70 E-value=2.8e-14 Score=122.00 Aligned_cols=292 Identities=16% Similarity=0.180 Sum_probs=229.2
Q ss_pred hcCchHHHHHhh---cCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhcC
Q 014945 112 QSGVVPRFIEFL---SRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS--PTDDVREQAVWALGNVAG 186 (415)
Q Consensus 112 ~~g~i~~L~~ll---~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~--~~~~v~~~a~~~L~nl~~ 186 (415)
..|..+.++.++ .+++ ..+...++.+|..+..+.|+. .+..++..++.+|.. ++.++....+.++..-|.
T Consensus 102 ~~ga~~~~it~~~la~~~~-~~~l~ksL~al~~lt~~qpdl----~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~ 176 (461)
T KOG4199|consen 102 KNGAHDALITLLELAESPN-ESVLKKSLEAINSLTHKQPDL----FDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACI 176 (461)
T ss_pred cCCCcchhhhHHHHhhCCc-hhHHHHHHHHHHHhhcCCcch----hccccHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Confidence 345555554433 3455 788889999999888876654 456778889998864 567788888888888888
Q ss_pred CCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCC-chh---------hhhchHHHHHHhhcCC-Ch
Q 014945 187 DSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQP-LFE---------QTRPALPALERLIHSN-DD 255 (415)
Q Consensus 187 ~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~-~~~---------~~~~~l~~l~~lL~~~-d~ 255 (415)
..+.+|+.+.+.++++.+.+.|.......+.+.++|++.-+...+... .+. ...+++..|.+.++-. ||
T Consensus 177 ~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp 256 (461)
T KOG4199|consen 177 MHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDP 256 (461)
T ss_pred HhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCc
Confidence 888899999999999999988866666689999999999998775322 111 1245677788887654 79
Q ss_pred hHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCC-hh---hHHHHHHHHHHhhcCChHHHHHHHHCCChHHHH
Q 014945 256 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPS-PS---VLIPALRTVGNIVTGDDMQTQCIINHQALPCLL 331 (415)
Q Consensus 256 ~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~-~~---v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~ 331 (415)
.+...++.+|..++-.++- .+.+.+.|+++.|++++.+.+ .. ....++..|..++. ++.....+++.|+.+.++
T Consensus 257 ~~L~~l~~tl~~lAVr~E~-C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG-~DsvKs~IV~~gg~~~ii 334 (461)
T KOG4199|consen 257 DSLVSLSTTLKALAVRDEI-CKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAG-SDSVKSTIVEKGGLDKII 334 (461)
T ss_pred cHHHHHHHHHHHHHHHHHH-HHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhC-CCchHHHHHHhcChHHHH
Confidence 9999999999999876654 466899999999999998743 33 44678888888876 556788899999999999
Q ss_pred HHh-cCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCC--HHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 014945 332 DLL-TQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAE--FEIKKEAAWAISNATSGGSNEQIKYKF 408 (415)
Q Consensus 332 ~ll-~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~--~~v~~~a~~aL~nl~~~~~~~~~~~l~ 408 (415)
.++ .+..+|.|..+++.+++-++-..|++-...++.|+-...++.|+... ..++++|||++.|++.+ +.++...+
T Consensus 335 ~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~r-s~~~~~~~- 412 (461)
T KOG4199|consen 335 TLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVR-SAENRTIL- 412 (461)
T ss_pred HHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHh-hhhccchH-
Confidence 866 45558899999999999999988999999999999999999998643 57999999999999987 44555555
Q ss_pred HHhhCC
Q 014945 409 FYVSRT 414 (415)
Q Consensus 409 ~~~~~g 414 (415)
+..|
T Consensus 413 --l~~G 416 (461)
T KOG4199|consen 413 --LANG 416 (461)
T ss_pred --Hhcc
Confidence 5555
No 18
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=4.3e-16 Score=143.74 Aligned_cols=318 Identities=19% Similarity=0.241 Sum_probs=218.9
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhH-HH---hcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCC
Q 014945 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINE-VI---QSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGT 146 (415)
Q Consensus 71 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~-~~---~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~ 146 (415)
+.+|.|.++|.++|...+.-|..+|.++.... .+..+. +. -.-.+|.|+++.++++ +.+|..|+.|+..+.-..
T Consensus 128 elLp~L~~~L~s~d~n~~EgA~~AL~KIcEDs-a~~lds~~~~rpl~~mipkfl~f~~h~s-pkiRs~A~~cvNq~i~~~ 205 (885)
T KOG2023|consen 128 ELLPQLCELLDSPDYNTCEGAFGALQKICEDS-AQFLDSDVLTRPLNIMIPKFLQFFKHPS-PKIRSHAVGCVNQFIIIQ 205 (885)
T ss_pred hHHHHHHHHhcCCcccccchhHHHHHHHHhhh-HHHHhhhcccCchHHhHHHHHHHHhCCC-hhHHHHHHhhhhheeecC
Confidence 35788999999999999999999999985332 111111 00 0125899999999998 999999999998877643
Q ss_pred chhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHH
Q 014945 147 SENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSN 226 (415)
Q Consensus 147 ~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~ 226 (415)
++....-++ ..++.+..+-.+++++||.+.+.++..+....+. +-.-.-.++++.++... ++.++.+.-.||..+..
T Consensus 206 ~qal~~~iD-~Fle~lFalanD~~~eVRk~vC~alv~Llevr~d-kl~phl~~IveyML~~t-qd~dE~VALEACEFwla 282 (885)
T KOG2023|consen 206 TQALYVHID-KFLEILFALANDEDPEVRKNVCRALVFLLEVRPD-KLVPHLDNIVEYMLQRT-QDVDENVALEACEFWLA 282 (885)
T ss_pred cHHHHHHHH-HHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHH-hcccchHHHHHHHHHHc-cCcchhHHHHHHHHHHH
Confidence 433222222 4577777888889999999999999999876653 11111234566777766 67788899999999999
Q ss_pred hhhCCCC--CchhhhhchHHHHHHhhcCCCh-------------------------------------------------
Q 014945 227 FCRGKPQ--PLFEQTRPALPALERLIHSNDD------------------------------------------------- 255 (415)
Q Consensus 227 l~~~~~~--~~~~~~~~~l~~l~~lL~~~d~------------------------------------------------- 255 (415)
++..+.. .-......++|.|+.-+..++.
T Consensus 283 ~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DD 362 (885)
T KOG2023|consen 283 LAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDD 362 (885)
T ss_pred HhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccccccccc
Confidence 9988511 1123345667776654422111
Q ss_pred -------hHHHHHHHHHHHhccCChHHHHHHHHcCc----HHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHC
Q 014945 256 -------EVLTDACWALSYLSDGTNDKIQAVIEAGV----CPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINH 324 (415)
Q Consensus 256 -------~v~~~a~~~l~~l~~~~~~~~~~~~~~~~----i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~ 324 (415)
.+|.-.+.+|--++ .+....+ +|.|-+.|.+++|.+++.+..++|.|+.|.- +.+..+
T Consensus 363 dD~~~dWNLRkCSAAaLDVLa--------nvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM---~g~~p~ 431 (885)
T KOG2023|consen 363 DDAFSDWNLRKCSAAALDVLA--------NVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCM---QGFVPH 431 (885)
T ss_pred ccccccccHhhccHHHHHHHH--------HhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHh---hhcccc
Confidence 12222222222222 1222333 4555556678899999999999999998753 333333
Q ss_pred --CChHHHHHHhcCCCccchHHHHHHHHHHHhcC--CHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhCCCC
Q 014945 325 --QALPCLLDLLTQNYKKSIKKEACWTISNITAG--NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGS 400 (415)
Q Consensus 325 --~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~--~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~ 400 (415)
.++|.++.+|.+. .+-||.-+||+|+..+.. ..+ .+..... ++..|++.+-+++-+|++.||.|+..+-+.+.
T Consensus 432 LpeLip~l~~~L~DK-kplVRsITCWTLsRys~wv~~~~-~~~~f~p-vL~~ll~~llD~NK~VQEAAcsAfAtleE~A~ 508 (885)
T KOG2023|consen 432 LPELIPFLLSLLDDK-KPLVRSITCWTLSRYSKWVVQDS-RDEYFKP-VLEGLLRRLLDSNKKVQEAACSAFATLEEEAG 508 (885)
T ss_pred hHHHHHHHHHHhccC-ccceeeeeeeeHhhhhhhHhcCC-hHhhhHH-HHHHHHHHHhcccHHHHHHHHHHHHHHHHhcc
Confidence 4789999999999 999999999999998862 111 2222222 56667777778999999999999999999888
Q ss_pred HHHHHHH
Q 014945 401 NEQIKYK 407 (415)
Q Consensus 401 ~~~~~~l 407 (415)
.+.++|+
T Consensus 509 ~eLVp~l 515 (885)
T KOG2023|consen 509 EELVPYL 515 (885)
T ss_pred chhHHHH
Confidence 8777766
No 19
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.69 E-value=5.3e-14 Score=138.30 Aligned_cols=329 Identities=19% Similarity=0.212 Sum_probs=235.0
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHH
Q 014945 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRV 152 (415)
Q Consensus 73 i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~ 152 (415)
++-|++..+|+++..|..|+..|..+...-.+.....+- .+.+.|.+.+.+++ ..+|..|+++++.++...+..+..
T Consensus 120 l~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~--~l~~lf~q~~~d~s-~~vr~~a~rA~~a~~~~~~~~~~~ 196 (1075)
T KOG2171|consen 120 LQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLD--DLLRLFSQTMTDPS-SPVRVAAVRALGAFAEYLENNKSE 196 (1075)
T ss_pred HHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHH--HHHHHHHHhccCCc-chHHHHHHHHHHHHHHHhccchHH
Confidence 445556667999999999999999886543222222222 25678888888888 459999999999988755433322
Q ss_pred HHh-CCChHHHHHhh----CCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhcc-chhHhHHHHHHHHHHH
Q 014945 153 VID-HGAVPIFVRLL----SSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE-HAKLSMLRNATWTLSN 226 (415)
Q Consensus 153 ~~~-~g~i~~L~~ll----~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~-~~~~~~~~~a~~~l~~ 226 (415)
... ...+|.++..+ ...+......++.+|..++...|.+-...+.. ++...+.+..+ .-+..++..|+.++..
T Consensus 197 ~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~-ii~~~l~Ia~n~~l~~~~R~~ALe~ivs 275 (1075)
T KOG2171|consen 197 VDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQ-IIQFSLEIAKNKELENSIRHLALEFLVS 275 (1075)
T ss_pred HHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHH-HHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 222 13456555554 44667777888889988887766543333321 44444444422 2356677777776666
Q ss_pred hhhCCCCCc----------------------------------------------------------hhhhhchHHHHHH
Q 014945 227 FCRGKPQPL----------------------------------------------------------FEQTRPALPALER 248 (415)
Q Consensus 227 l~~~~~~~~----------------------------------------------------------~~~~~~~l~~l~~ 248 (415)
+++..|... ......+++.+-.
T Consensus 276 ~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~ 355 (1075)
T KOG2171|consen 276 LSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEA 355 (1075)
T ss_pred HHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHH
Confidence 655411000 0001234555666
Q ss_pred hhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChH
Q 014945 249 LIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALP 328 (415)
Q Consensus 249 lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~ 328 (415)
++.+.+..-|..++.+|+.++.+..+.+...+ ..+++.++..|.++++.||-.||.++|.+++.-....+.-....+++
T Consensus 356 ~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l-~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~ 434 (1075)
T KOG2171|consen 356 MLQSTEWKERHAALLALSVIAEGCSDVMIGNL-PKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPP 434 (1075)
T ss_pred HhcCCCHHHHHHHHHHHHHHHcccHHHHHHHH-HHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccH
Confidence 77889999999999999999999887765544 35888899999999999999999999999998777777777778888
Q ss_pred HHHHHhcCCCccchHHHHHHHHHHHhcC-CHHHHHHHHHcCCHH-HHHHHhccCCHHHHHHHHHHHHHHhCCCCHHHHHH
Q 014945 329 CLLDLLTQNYKKSIKKEACWTISNITAG-NVNQIQAIIEAGIIG-PLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKY 406 (415)
Q Consensus 329 ~L~~ll~~~~~~~v~~~a~~~l~nl~~~-~~~~~~~l~~~~~i~-~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~ 406 (415)
.|+..+.+..+++|+..|+-++.|+... ..+.+...++. ++. .+..++.++.+.+++.+..+|+..+..+...+++|
T Consensus 435 aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~-lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY 513 (1075)
T KOG2171|consen 435 ALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDG-LMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPY 513 (1075)
T ss_pred HHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHH-HHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhH
Confidence 9999999987889999999999999985 44555555543 666 44455566889999999999999998888888777
Q ss_pred H
Q 014945 407 K 407 (415)
Q Consensus 407 l 407 (415)
+
T Consensus 514 ~ 514 (1075)
T KOG2171|consen 514 F 514 (1075)
T ss_pred H
Confidence 6
No 20
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.68 E-value=5.7e-15 Score=140.09 Aligned_cols=279 Identities=19% Similarity=0.225 Sum_probs=220.3
Q ss_pred chHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCch--hH
Q 014945 115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK--CR 192 (415)
Q Consensus 115 ~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~--~~ 192 (415)
-+|..+.+|.+.+ +.+|..|+.-+-.++.++.+.+..+.+.|+|+.|+.+|.+.+.+++.+|+|+|.||..+... .+
T Consensus 234 ~lpe~i~mL~~q~-~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NK 312 (717)
T KOG1048|consen 234 TLPEVISMLMSQD-PSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNK 312 (717)
T ss_pred ccHHHHHHHhccC-hhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccc
Confidence 4788899999988 99999999999999999999999999999999999999999999999999999999976654 67
Q ss_pred HHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcC--------------CChhHH
Q 014945 193 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHS--------------NDDEVL 258 (415)
Q Consensus 193 ~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~--------------~d~~v~ 258 (415)
-.+.+.++++.++++|....|.++++.++.+|+||+.. .......+...++.|...+-. .+.++.
T Consensus 313 lai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~-D~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf 391 (717)
T KOG1048|consen 313 LAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSN-DALKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVF 391 (717)
T ss_pred hhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccch-hHHHHHHHHHHHHHHHHhhcccccccCCCCcccccccceee
Confidence 78889999999999997778999999999999999988 344445556666666544311 135678
Q ss_pred HHHHHHHHHhccCChHHHHHHHHc-CcHHHHHHhcC--------------------------------------------
Q 014945 259 TDACWALSYLSDGTNDKIQAVIEA-GVCPRLVELLR-------------------------------------------- 293 (415)
Q Consensus 259 ~~a~~~l~~l~~~~~~~~~~~~~~-~~i~~L~~lL~-------------------------------------------- 293 (415)
.++..+|.|++....+..+.+.+. |.++.|+..+.
T Consensus 392 ~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~ 471 (717)
T KOG1048|consen 392 RNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIAR 471 (717)
T ss_pred ehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccc
Confidence 889999999987555555555443 55555554432
Q ss_pred ----------------------------------------------------------CCChhhHHHHHHHHHHhhcCCh
Q 014945 294 ----------------------------------------------------------HPSPSVLIPALRTVGNIVTGDD 315 (415)
Q Consensus 294 ----------------------------------------------------------~~~~~v~~~a~~~l~nl~~~~~ 315 (415)
+.++.+.+.++.+|.|++.+..
T Consensus 472 ~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~ 551 (717)
T KOG1048|consen 472 LPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLW 551 (717)
T ss_pred cccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCC
Confidence 0111255677778888877653
Q ss_pred ----HHHHHH-HHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccC------CHHH
Q 014945 316 ----MQTQCI-INHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA------EFEI 384 (415)
Q Consensus 316 ----~~~~~~-~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~------~~~v 384 (415)
.....+ ....+++.|++++..+ ++.|.+.++.+|.|++.+- ..+.++..++++.|++.|... +.++
T Consensus 552 ~~~~~~~~~v~~kekgl~~l~~ll~~~-~~~vv~s~a~~LrNls~d~--rnk~ligk~a~~~lv~~Lp~~~~~~~~sedt 628 (717)
T KOG1048|consen 552 TWSEYMRGAVFRKEKGLPPLVELLRND-DSDVVRSAAGALRNLSRDI--RNKELIGKYAIPDLVRCLPGSGPSTSLSEDT 628 (717)
T ss_pred cchhHHHhhhhhhccCccHHHHHHhcC-CchHHHHHHHHHhhhccCc--hhhhhhhcchHHHHHHhCcCCCCCcCchHHH
Confidence 222333 4668899999999999 9999999999999999862 245677788999999999763 2588
Q ss_pred HHHHHHHHHHHhCC
Q 014945 385 KKEAAWAISNATSG 398 (415)
Q Consensus 385 ~~~a~~aL~nl~~~ 398 (415)
...+|.+|.|+...
T Consensus 629 v~~vc~tl~niv~~ 642 (717)
T KOG1048|consen 629 VRAVCHTLNNIVRK 642 (717)
T ss_pred HHHHHHhHHHHHHH
Confidence 89999999999865
No 21
>PRK09687 putative lyase; Provisional
Probab=99.66 E-value=2.4e-14 Score=126.25 Aligned_cols=227 Identities=14% Similarity=0.122 Sum_probs=180.3
Q ss_pred chHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHH
Q 014945 115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDL 194 (415)
Q Consensus 115 ~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 194 (415)
-++.|..+|.+.+ ..++..|++.|..+... .+++.+..++.++++.+|..++|+|+.|-.....
T Consensus 24 ~~~~L~~~L~d~d-~~vR~~A~~aL~~~~~~-----------~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~---- 87 (280)
T PRK09687 24 NDDELFRLLDDHN-SLKRISSIRVLQLRGGQ-----------DVFRLAIELCSSKNPIERDIGADILSQLGMAKRC---- 87 (280)
T ss_pred cHHHHHHHHhCCC-HHHHHHHHHHHHhcCcc-----------hHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc----
Confidence 4688999999988 99999999999877642 3577888899999999999999999998543221
Q ss_pred HHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChH
Q 014945 195 VLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTND 274 (415)
Q Consensus 195 ~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~ 274 (415)
....++.|..++.+++++.++..++.+|.+++...... ...+++.+...+.++++.|+..++++|+.+.. +
T Consensus 88 --~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~--~- 158 (280)
T PRK09687 88 --QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVIND--E- 158 (280)
T ss_pred --hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccCC--H-
Confidence 11255677777558889999999999999997543211 12355667777888899999999999987642 1
Q ss_pred HHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHh
Q 014945 275 KIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNIT 354 (415)
Q Consensus 275 ~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~ 354 (415)
..++.|+.+|.++++.|+..|+.+||.+..+++ ..++.|+..+.+. ++.||..|+++|+.+-
T Consensus 159 --------~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~-~~~VR~~A~~aLg~~~ 220 (280)
T PRK09687 159 --------AAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDK-NEEIRIEAIIGLALRK 220 (280)
T ss_pred --------HHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCC-ChHHHHHHHHHHHccC
Confidence 257899999999999999999999999954443 3467799999998 9999999999999864
Q ss_pred cCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhC
Q 014945 355 AGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 397 (415)
Q Consensus 355 ~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~ 397 (415)
++. ++|.|++.+.+++ ++..|+.+|+++-.
T Consensus 221 --~~~---------av~~Li~~L~~~~--~~~~a~~ALg~ig~ 250 (280)
T PRK09687 221 --DKR---------VLSVLIKELKKGT--VGDLIIEAAGELGD 250 (280)
T ss_pred --Chh---------HHHHHHHHHcCCc--hHHHHHHHHHhcCC
Confidence 333 6888999998766 67789999998874
No 22
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.65 E-value=8.7e-14 Score=138.22 Aligned_cols=322 Identities=20% Similarity=0.216 Sum_probs=229.8
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCC--ChHHHHHHHHHHHHHhCCCchh
Q 014945 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDD--FPQLQFEAAWALTNIASGTSEN 149 (415)
Q Consensus 72 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~--~~~i~~~a~~~L~~l~~~~~~~ 149 (415)
....++.++...|++ .-...|..+.+. .+..-.+..+|.+|.|+++|.-++ +.+.+..|-.+|.||....++.
T Consensus 198 ts~sllsml~t~D~e---e~ar~fLemSss--~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~ 272 (2195)
T KOG2122|consen 198 TSNSLLSMLGTDDEE---EMARTFLEMSSS--PESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDE 272 (2195)
T ss_pred hhhHHhhhcccCCHH---HHHHHHHHhccC--chhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcch
Confidence 344666777766663 334555555332 355566889999999999998654 2678899999999999877776
Q ss_pred hHHHHhCCChHHHH---H-------hhCC--------CCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhc--
Q 014945 150 TRVVIDHGAVPIFV---R-------LLSS--------PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN-- 209 (415)
Q Consensus 150 ~~~~~~~g~i~~L~---~-------ll~~--------~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~-- 209 (415)
...-.+..++..|- . ++.. ++.--...|+.+|..++.+.+ .|..+.+.|++..+-.++.
T Consensus 273 kr~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SFDEE-hR~aM~ELG~LqAIaeLl~vD 351 (2195)
T KOG2122|consen 273 KRGRREKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSFDEE-HRHAMNELGGLQAIAELLQVD 351 (2195)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhccHH-HHHHHHHhhhHHHHHHHHHHH
Confidence 54433323333222 1 2221 111122367777777776655 7899999999999888763
Q ss_pred ---------cchhHhHHHHHHHHHHHhhhCC--CCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHH
Q 014945 210 ---------EHAKLSMLRNATWTLSNFCRGK--PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQA 278 (415)
Q Consensus 210 ---------~~~~~~~~~~a~~~l~~l~~~~--~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~ 278 (415)
......+++++..+|.||..++ .........+++..+|..|.+..+++..-...+|.||+...+.....
T Consensus 352 h~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKk 431 (2195)
T KOG2122|consen 352 HEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKK 431 (2195)
T ss_pred HHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHH
Confidence 1235678999999999999997 33344556899999999999888888888899999998765543333
Q ss_pred HH-HcCc--------------------------------------------HHHHHHhcCCC----ChhhHHHHHHHHHH
Q 014945 279 VI-EAGV--------------------------------------------CPRLVELLRHP----SPSVLIPALRTVGN 309 (415)
Q Consensus 279 ~~-~~~~--------------------------------------------i~~L~~lL~~~----~~~v~~~a~~~l~n 309 (415)
++ +.|- +..|+.+|... ...+.+.+-++|.|
T Consensus 432 vLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRN 511 (2195)
T KOG2122|consen 432 VLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRN 511 (2195)
T ss_pred HHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHH
Confidence 32 2233 33344444322 12344444444444
Q ss_pred hh---cCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHH
Q 014945 310 IV---TGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKK 386 (415)
Q Consensus 310 l~---~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~ 386 (415)
+. ..++.+++.+.+++++..|+..|++. +-.+..++|.+|+||.+.+++..+.+++.|.++.|.+++.+.+..+..
T Consensus 512 VSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~-SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~ 590 (2195)
T KOG2122|consen 512 VSSLIATCEDYRQILRRHNCLQTLLQHLKSH-SLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAM 590 (2195)
T ss_pred HHhHhhccchHHHHHHHhhHHHHHHHHhhhc-ceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhh
Confidence 32 23345677777888999999999998 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCC
Q 014945 387 EAAWAISNATSGGS 400 (415)
Q Consensus 387 ~a~~aL~nl~~~~~ 400 (415)
-++.+|.|+...-+
T Consensus 591 GSaaALrNLln~RP 604 (2195)
T KOG2122|consen 591 GSAAALRNLLNFRP 604 (2195)
T ss_pred hHHHHHHHHhcCCc
Confidence 99999999987654
No 23
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.64 E-value=2.3e-14 Score=142.25 Aligned_cols=265 Identities=20% Similarity=0.181 Sum_probs=221.6
Q ss_pred HHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCC--------C---ChHHHHHHHHHHHHHhCCCchhhHHHHh-CC
Q 014945 90 DATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRD--------D---FPQLQFEAAWALTNIASGTSENTRVVID-HG 157 (415)
Q Consensus 90 ~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~--------~---~~~i~~~a~~~L~~l~~~~~~~~~~~~~-~g 157 (415)
.|+..|.++ +.+ .+..+.+-+.|++..+-+|+.-. + +..+|..|..+|+||..++..++..+.. -|
T Consensus 317 aA~~~lMK~-SFD-EEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rg 394 (2195)
T KOG2122|consen 317 AALCTLMKL-SFD-EEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRG 394 (2195)
T ss_pred HHHHHHHHh-hcc-HHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhh
Confidence 566777776 443 68888899999988888776531 1 2478999999999999998887776665 49
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhcC-CCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCC--CCC
Q 014945 158 AVPIFVRLLSSPTDDVREQAVWALGNVAG-DSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK--PQP 234 (415)
Q Consensus 158 ~i~~L~~ll~~~~~~v~~~a~~~L~nl~~-~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~--~~~ 234 (415)
++..++..|.+..+++.+....+|.||+= -+...+..+-+.|.+..|...-.....+..+..++.+|+||+.+- ...
T Consensus 395 fMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA 474 (2195)
T KOG2122|consen 395 FMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKA 474 (2195)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccch
Confidence 99999999999888999999999999983 223356677788889999888657777788899999999999876 455
Q ss_pred chhhhhchHHHHHHhhcCC----ChhHHHHHHHHHHHhcc---CChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHH
Q 014945 235 LFEQTRPALPALERLIHSN----DDEVLTDACWALSYLSD---GTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV 307 (415)
Q Consensus 235 ~~~~~~~~l~~l~~lL~~~----d~~v~~~a~~~l~~l~~---~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l 307 (415)
.+..+.|++-+|+.+|... .-.|++.+-.+|.|++. ..+...+.+.+.+++..|++.|++.+-.+...+|++|
T Consensus 475 ~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTL 554 (2195)
T KOG2122|consen 475 EICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTL 554 (2195)
T ss_pred hhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhh
Confidence 6777899999999999654 35678888888887764 3455667788999999999999999999999999999
Q ss_pred HHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCC
Q 014945 308 GNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN 357 (415)
Q Consensus 308 ~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~ 357 (415)
+||...+++..+.+++.|+++.|..++.+. +..+...++.+|.|+...-
T Consensus 555 WNLSAR~p~DQq~LwD~gAv~mLrnLIhSK-hkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 555 WNLSARSPEDQQMLWDDGAVPMLRNLIHSK-HKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred hhhhcCCHHHHHHHHhcccHHHHHHHHhhh-hhhhhhhHHHHHHHHhcCC
Confidence 999999999999999999999999999998 9999999999999999864
No 24
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.63 E-value=2.2e-14 Score=126.53 Aligned_cols=309 Identities=16% Similarity=0.156 Sum_probs=224.8
Q ss_pred CHHHHHHHHHHHHHHhccC--CCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHH
Q 014945 84 DRNIQLDATTQFRKLLSIE--RSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPI 161 (415)
Q Consensus 84 ~~~~~~~a~~~l~~l~~~~--~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~ 161 (415)
+..+...+..++......+ ++.....-++.+++..|.+..++++ .++..+..++|+|+|.++.+.|..+.+.|+-..
T Consensus 55 ~~tv~~~qssC~A~~sk~ev~r~~F~~~~I~a~~le~Lrq~psS~d-~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqi 133 (604)
T KOG4500|consen 55 SDTVYLFQSSCLADRSKNEVERSLFRNYCIDAEALELLRQTPSSPD-TEVHEQCFRALGNICYDNNENRAAFFNLGGAQI 133 (604)
T ss_pred cchhhhhhHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHhCCCCCc-ccHHHHHHHHHhhhhccCchhHHHHHhcCCcee
Confidence 3444455555555553211 1111223356778888999999887 899999999999999999999999999999888
Q ss_pred HHHhhCC-------CCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhc-cchhHhHHHHHHHHHHHhhhCCCC
Q 014945 162 FVRLLSS-------PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN-EHAKLSMLRNATWTLSNFCRGKPQ 233 (415)
Q Consensus 162 L~~ll~~-------~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~-~~~~~~~~~~a~~~l~~l~~~~~~ 233 (415)
++++|+. .+.+....+...|.|..-++...+..+.+.|+++.|...+. ..++....+.....+.|+.+-...
T Consensus 134 vid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e 213 (604)
T KOG4500|consen 134 VIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCE 213 (604)
T ss_pred hHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHH
Confidence 8888764 23567778889999999999999999999999999988863 344555556555555555433211
Q ss_pred --CchhhhhchHHHHHHhhcCC-ChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCC-CC-------hhhHHH
Q 014945 234 --PLFEQTRPALPALERLIHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-PS-------PSVLIP 302 (415)
Q Consensus 234 --~~~~~~~~~l~~l~~lL~~~-d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~-~~-------~~v~~~ 302 (415)
.++.....+.-.+++++... ++++.+-+...+...+.++.-.. .+.+.|.+..++.++.. .+ -.....
T Consensus 214 ~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aend~Vkl-~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~ 292 (604)
T KOG4500|consen 214 MLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAENDLVKL-SLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKR 292 (604)
T ss_pred hhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcCcceee-ehhhcchHHHHHHHHHhcccccchHHHHHHHHh
Confidence 22222334444556666443 56677777888888887766543 37788999998888854 11 123344
Q ss_pred HHHHHHHhhcCChHHHHHHHHCC-ChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhcc--
Q 014945 303 ALRTVGNIVTGDDMQTQCIINHQ-ALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN-- 379 (415)
Q Consensus 303 a~~~l~nl~~~~~~~~~~~~~~~-~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~-- 379 (415)
++..+.-+..|++ ..+.+...+ +++.+...+.+. +....-.+..+++|++..+.. ..+++++|++..|++++..
T Consensus 293 ~~el~vllltGDe-SMq~L~~~p~~l~~~~sw~~S~-d~~l~t~g~LaigNfaR~D~~-ci~~v~~~~~nkL~~~l~~~~ 369 (604)
T KOG4500|consen 293 IAELDVLLLTGDE-SMQKLHADPQFLDFLESWFRSD-DSNLITMGSLAIGNFARRDDI-CIQLVQKDFLNKLISCLMQEK 369 (604)
T ss_pred hhhHhhhhhcCch-HHHHHhcCcHHHHHHHHHhcCC-chhHHHHHHHHHHhhhccchH-HHHHHHHHHHHHHHHHHHHhc
Confidence 5555555666655 556666665 899999999999 999999999999999996544 5688899999999999864
Q ss_pred ---CCHHHHHHHHHHHHHHhC
Q 014945 380 ---AEFEIKKEAAWAISNATS 397 (415)
Q Consensus 380 ---~~~~v~~~a~~aL~nl~~ 397 (415)
++.+++..++.||.|+.-
T Consensus 370 ~vdgnV~~qhA~lsALRnl~I 390 (604)
T KOG4500|consen 370 DVDGNVERQHACLSALRNLMI 390 (604)
T ss_pred CCCccchhHHHHHHHHHhccc
Confidence 678899999999999974
No 25
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.62 E-value=5.3e-13 Score=117.90 Aligned_cols=324 Identities=13% Similarity=0.054 Sum_probs=246.5
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCC---C---ChHHHHHHHHHHHHHhC
Q 014945 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRD---D---FPQLQFEAAWALTNIAS 144 (415)
Q Consensus 71 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~---~---~~~i~~~a~~~L~~l~~ 144 (415)
+.+..|.+...|+|.++-.+..++|.++...+ ++....+.+.|+-..++..|+.. + +.+....+...|.|..-
T Consensus 87 ~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn-~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l 165 (604)
T KOG4500|consen 87 EALELLRQTPSSPDTEVHEQCFRALGNICYDN-NENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYIL 165 (604)
T ss_pred HHHHHHHhCCCCCcccHHHHHHHHHhhhhccC-chhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhC
Confidence 46677888888888899999999999997765 88888899999977777777642 1 24566667788999999
Q ss_pred CCchhhHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhcCC-CchhHHHHHhcCChHHHHHHhccchhHhHHHHHH
Q 014945 145 GTSENTRVVIDHGAVPIFVRLLSS--PTDDVREQAVWALGNVAGD-SPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNAT 221 (415)
Q Consensus 145 ~~~~~~~~~~~~g~i~~L~~ll~~--~~~~v~~~a~~~L~nl~~~-~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~ 221 (415)
++.+.+..+.+.|+++.|...+.- .+....+..+-..+|+.+- .+...+..........+++++....++++.+.+.
T Consensus 166 ~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~f 245 (604)
T KOG4500|consen 166 DSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIF 245 (604)
T ss_pred CcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHH
Confidence 999999999999999999887653 5667777777777777632 2223345556666778888886667888899999
Q ss_pred HHHHHhhhCCCCCchhhhhchHHHHHHhhcC-CC-------hhHHHHHHHHHHHhccCChHHHHHHHHcC-cHHHHHHhc
Q 014945 222 WTLSNFCRGKPQPLFEQTRPALPALERLIHS-ND-------DEVLTDACWALSYLSDGTNDKIQAVIEAG-VCPRLVELL 292 (415)
Q Consensus 222 ~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~-~d-------~~v~~~a~~~l~~l~~~~~~~~~~~~~~~-~i~~L~~lL 292 (415)
..+...++++...-.....|.+..+..+++. .+ -.....++....-+..+++.. +.+...+ +++.+.+++
T Consensus 246 eila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSM-q~L~~~p~~l~~~~sw~ 324 (604)
T KOG4500|consen 246 EILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESM-QKLHADPQFLDFLESWF 324 (604)
T ss_pred HHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHH-HHHhcCcHHHHHHHHHh
Confidence 9999998886555455556777777777754 22 223344555555555666554 5666666 899999999
Q ss_pred CCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCC----CccchHHHHHHHHHHHhcCCHHHHHHHHHcC
Q 014945 293 RHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN----YKKSIKKEACWTISNITAGNVNQIQAIIEAG 368 (415)
Q Consensus 293 ~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~----~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~ 368 (415)
.+++......+.-+|||++..++.. ..+++.+++..|+.++... .+.+++..++.+|.|++--- .+...++..|
T Consensus 325 ~S~d~~l~t~g~LaigNfaR~D~~c-i~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv-~nka~~~~aG 402 (604)
T KOG4500|consen 325 RSDDSNLITMGSLAIGNFARRDDIC-IQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPV-SNKAHFAPAG 402 (604)
T ss_pred cCCchhHHHHHHHHHHhhhccchHH-HHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccC-Cchhhccccc
Confidence 9999999999999999999977644 4588889999999988542 15567788899999999742 3356788999
Q ss_pred CHHHHHHHhccCCHHHHHHHHHHHHHHhCC
Q 014945 369 IIGPLVNLLLNAEFEIKKEAAWAISNATSG 398 (415)
Q Consensus 369 ~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~ 398 (415)
+.+.++..++...|.+...-...+.-+..+
T Consensus 403 vteaIL~~lk~~~ppv~fkllgTlrM~~d~ 432 (604)
T KOG4500|consen 403 VTEAILLQLKLASPPVTFKLLGTLRMIRDS 432 (604)
T ss_pred hHHHHHHHHHhcCCcchHHHHHHHHHHHhc
Confidence 999999999998888887777766665544
No 26
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.61 E-value=1.2e-13 Score=118.94 Aligned_cols=196 Identities=19% Similarity=0.233 Sum_probs=162.8
Q ss_pred HhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCch
Q 014945 111 IQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 190 (415)
Q Consensus 111 ~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~ 190 (415)
.+.+-++.|+.+|+...++.++..++.++++.+.. +..+..+.+.|+++.+..++.++++.+++.|+++|.|++.+.+
T Consensus 9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf-~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~e- 86 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAAF-PFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDE- 86 (254)
T ss_pred cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccC-hhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChh-
Confidence 55667899999999765599999999999998774 8899999999999999999999999999999999999998776
Q ss_pred hHHHHHhcCChHHHHHHhccc-hhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhc
Q 014945 191 CRDLVLSNGALMPLLAQFNEH-AKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLS 269 (415)
Q Consensus 191 ~~~~~~~~g~i~~L~~~l~~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~ 269 (415)
.+..+-. .++.++..+... -+..++..++.+|.+++..... ...+...+|.++.+|.+++..++..++++|.+|+
T Consensus 87 n~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~--~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS 162 (254)
T PF04826_consen 87 NQEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDY--HHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLS 162 (254)
T ss_pred hHHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcch--hhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhc
Confidence 3444432 466666654333 4788999999999999866322 3334678999999999999999999999999999
Q ss_pred cCChHHHHHHHHcCcHHHHHHhcCCC-ChhhHHHHHHHHHHhhcC
Q 014945 270 DGTNDKIQAVIEAGVCPRLVELLRHP-SPSVLIPALRTVGNIVTG 313 (415)
Q Consensus 270 ~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~~l~nl~~~ 313 (415)
..+.. ...++..+++..++.++..+ +..+...++..+.||..+
T Consensus 163 ~np~~-~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 163 ENPDM-TRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN 206 (254)
T ss_pred cCHHH-HHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence 87664 46688889999999999765 578899999999999654
No 27
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.61 E-value=2.8e-14 Score=110.50 Aligned_cols=118 Identities=34% Similarity=0.507 Sum_probs=111.2
Q ss_pred HHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCH
Q 014945 279 VIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV 358 (415)
Q Consensus 279 ~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~ 358 (415)
+++.|+++.++++|.+.++.++..++++|++++...+.....+++.|+++.+.+++.++ ++.++..++|+|+|++.+.+
T Consensus 3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE-DEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC-CHHHHHHHHHHHHHHccCcH
Confidence 56789999999999999999999999999999999888888899999999999999998 99999999999999999888
Q ss_pred HHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhC
Q 014945 359 NQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 397 (415)
Q Consensus 359 ~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~ 397 (415)
.....+.+.|+++.|++++.+++.+++..|+|+|.|++.
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 888888899999999999999999999999999999873
No 28
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=7.4e-13 Score=130.41 Aligned_cols=327 Identities=15% Similarity=0.145 Sum_probs=228.9
Q ss_pred HHHHHhhcC-CCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHH
Q 014945 74 PAMVAGVWS-DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRV 152 (415)
Q Consensus 74 ~~l~~~l~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~ 152 (415)
..++..+.+ ..+.++..-+..+..+++..-.+ --.++++.|.+..++++ +..|+.|+.+|..+...-...-.-
T Consensus 82 s~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e-----~WPell~~L~q~~~S~~-~~~rE~al~il~s~~~~~~~~~~~ 155 (1075)
T KOG2171|consen 82 SSLLEIIQSETEPSVRHKLADVIAEIARNDLPE-----KWPELLQFLFQSTKSPN-PSLRESALLILSSLPETFGNTLQP 155 (1075)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHhcccc-----chHHHHHHHHHHhcCCC-cchhHHHHHHHHhhhhhhccccch
Confidence 456666665 45677888888888887654122 22357889999999999 999999999999988642222111
Q ss_pred HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCc---hhHHHHHhcCChHHHHHHhc---cchhHhHHHHHHHHHHH
Q 014945 153 VIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP---KCRDLVLSNGALMPLLAQFN---EHAKLSMLRNATWTLSN 226 (415)
Q Consensus 153 ~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~---~~~~~~~~~g~i~~L~~~l~---~~~~~~~~~~a~~~l~~ 226 (415)
.+. .+.+.+.+.+.+++..++..++.+++.++...+ ..++.+.. .+|.++..+. +..+.+....+..++..
T Consensus 156 ~~~-~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~--llP~~l~vl~~~i~~~d~~~a~~~l~~l~E 232 (1075)
T KOG2171|consen 156 HLD-DLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRD--LLPSLLNVLQEVIQDGDDDAAKSALEALIE 232 (1075)
T ss_pred hHH-HHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHH--HhHHHHHHhHhhhhccchHHHHHHHHHHHH
Confidence 111 234555556666666699999999999985443 22233322 5666777663 34466667778888888
Q ss_pred hhhCCCCCchhhhhchHHHHHHhhcCC--ChhHHHHHHHHHHHhccCChHHHH---------------------------
Q 014945 227 FCRGKPQPLFEQTRPALPALERLIHSN--DDEVLTDACWALSYLSDGTNDKIQ--------------------------- 277 (415)
Q Consensus 227 l~~~~~~~~~~~~~~~l~~l~~lL~~~--d~~v~~~a~~~l~~l~~~~~~~~~--------------------------- 277 (415)
+....|..-......++........+. ++.+|..|+..|..++...+...+
T Consensus 233 l~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~ 312 (1075)
T KOG2171|consen 233 LLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWS 312 (1075)
T ss_pred HHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhc
Confidence 887765544445555555555555544 566777777766655542111000
Q ss_pred ------------------HHHH--------c----CcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCCh
Q 014945 278 ------------------AVIE--------A----GVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQAL 327 (415)
Q Consensus 278 ------------------~~~~--------~----~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l 327 (415)
..++ . -+++.+-.+|.+++|.-|..++.+|+.++.|..+.....++ .++
T Consensus 313 ~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~-~Il 391 (1075)
T KOG2171|consen 313 NEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLP-KIL 391 (1075)
T ss_pred cccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHH-HHH
Confidence 0000 0 12344555567899999999999999999999887776555 788
Q ss_pred HHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhcc-CCHHHHHHHHHHHHHHhCCCCHHHH-H
Q 014945 328 PCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN-AEFEIKKEAAWAISNATSGGSNEQI-K 405 (415)
Q Consensus 328 ~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~-~~~~v~~~a~~aL~nl~~~~~~~~~-~ 405 (415)
+.++..++++ +|+||..||.+++.++.+-...++.-...-+++.|+..+++ .+++|+..|+.|+.|++..++.+.+ +
T Consensus 392 ~~Vl~~l~Dp-hprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~p 470 (1075)
T KOG2171|consen 392 PIVLNGLNDP-HPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEP 470 (1075)
T ss_pred HHHHhhcCCC-CHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHH
Confidence 9999999999 99999999999999999766667777777789999999987 5689999999999999999987777 7
Q ss_pred HHHHHh
Q 014945 406 YKFFYV 411 (415)
Q Consensus 406 ~l~~~~ 411 (415)
||+.++
T Consensus 471 YLd~lm 476 (1075)
T KOG2171|consen 471 YLDGLM 476 (1075)
T ss_pred HHHHHH
Confidence 774433
No 29
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.58 E-value=1.4e-12 Score=133.97 Aligned_cols=259 Identities=19% Similarity=0.199 Sum_probs=167.9
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhH
Q 014945 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 151 (415)
Q Consensus 72 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~ 151 (415)
.++.|+..|.++|+.++..|+..|..+.. .+.++.|+..|++++ +.++..|+..|..+....+
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~------------~~~~~~L~~aL~D~d-~~VR~~Aa~aL~~l~~~~~---- 684 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETTP------------PGFGPALVAALGDGA-AAVRRAAAEGLRELVEVLP---- 684 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhcc------------hhHHHHHHHHHcCCC-HHHHHHHHHHHHHHHhccC----
Confidence 46789999999999999999999988632 235788999998888 8999999999988753211
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCc------------hhHHH----HHhcCChHHHHHHhccchhHh
Q 014945 152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP------------KCRDL----VLSNGALMPLLAQFNEHAKLS 215 (415)
Q Consensus 152 ~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~------------~~~~~----~~~~g~i~~L~~~l~~~~~~~ 215 (415)
..+.|...|.++++.++..++.+|+.+....+ ..|.. +...+..+.|...+ .+++..
T Consensus 685 ------~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l-~D~~~~ 757 (897)
T PRK13800 685 ------PAPALRDHLGSPDPVVRAAALDVLRALRAGDAALFAAALGDPDHRVRIEAVRALVSVDDVESVAGAA-TDENRE 757 (897)
T ss_pred ------chHHHHHHhcCCCHHHHHHHHHHHHhhccCCHHHHHHHhcCCCHHHHHHHHHHHhcccCcHHHHHHh-cCCCHH
Confidence 12345555555666666666666655431111 00000 00001122333444 445555
Q ss_pred HHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCC
Q 014945 216 MLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP 295 (415)
Q Consensus 216 ~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~ 295 (415)
++..++.+|..+.... ...++.|..+++++|+.|+..++.+|+.+..... +.+.+...|.++
T Consensus 758 VR~~aa~aL~~~~~~~--------~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~~----------~~~~l~~aL~d~ 819 (897)
T PRK13800 758 VRIAVAKGLATLGAGG--------APAGDAVRALTGDPDPLVRAAALAALAELGCPPD----------DVAAATAALRAS 819 (897)
T ss_pred HHHHHHHHHHHhcccc--------chhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcch----------hHHHHHHHhcCC
Confidence 5555555555554321 1225666777777777777777777777643211 124566777777
Q ss_pred ChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHH
Q 014945 296 SPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVN 375 (415)
Q Consensus 296 ~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~ 375 (415)
++.||..|+.+|+.+... ..++.|..+|.++ ++.||..|+++|+.+ .+++. ..+.|..
T Consensus 820 d~~VR~~Aa~aL~~l~~~-----------~a~~~L~~~L~D~-~~~VR~~A~~aL~~~-~~~~~---------a~~~L~~ 877 (897)
T PRK13800 820 AWQVRQGAARALAGAAAD-----------VAVPALVEALTDP-HLDVRKAAVLALTRW-PGDPA---------ARDALTT 877 (897)
T ss_pred ChHHHHHHHHHHHhcccc-----------chHHHHHHHhcCC-CHHHHHHHHHHHhcc-CCCHH---------HHHHHHH
Confidence 788888888888776421 2357888888888 889999999999886 23343 3566677
Q ss_pred HhccCCHHHHHHHHHHHHH
Q 014945 376 LLLNAEFEIKKEAAWAISN 394 (415)
Q Consensus 376 ~l~~~~~~v~~~a~~aL~n 394 (415)
.+++++.+||..|..+|..
T Consensus 878 al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 878 ALTDSDADVRAYARRALAH 896 (897)
T ss_pred HHhCCCHHHHHHHHHHHhh
Confidence 8888899999999988864
No 30
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.58 E-value=6.2e-14 Score=108.58 Aligned_cols=119 Identities=35% Similarity=0.621 Sum_probs=110.9
Q ss_pred HHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCC
Q 014945 109 EVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS 188 (415)
Q Consensus 109 ~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~ 188 (415)
.+++.|+++.|++++.+++ +.++..++++|++++.++++....+.+.|+++.++.++.++++.++..++|+|+||+.+.
T Consensus 2 ~~~~~~~i~~l~~~l~~~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSD-ENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGP 80 (120)
T ss_pred hHHHcCChHHHHHHHHcCC-HHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCc
Confidence 4668899999999999988 899999999999999988899999999999999999999999999999999999999998
Q ss_pred chhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhh
Q 014945 189 PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 229 (415)
Q Consensus 189 ~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~ 229 (415)
+..+..+...|+++.++..+ .+.+..+++.++|++.+++.
T Consensus 81 ~~~~~~~~~~g~l~~l~~~l-~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 81 EDNKLIVLEAGGVPKLVNLL-DSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHHHCCChHHHHHHH-hcCCHHHHHHHHHHHHHhhC
Confidence 87888889999999999999 66688999999999999873
No 31
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.57 E-value=4.4e-13 Score=115.51 Aligned_cols=226 Identities=20% Similarity=0.232 Sum_probs=175.4
Q ss_pred HhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCC
Q 014945 154 IDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP 232 (415)
Q Consensus 154 ~~~g~i~~L~~ll~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~ 232 (415)
.+.+-++.|+.+|+. .++.+++.++.+++|.+..+. .++.+.+.|+++.+..++ +++++.++..|++++.|++...+
T Consensus 9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~-nq~~Ir~~Ggi~lI~~lL-~~p~~~vr~~AL~aL~Nls~~~e 86 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFPF-NQDIIRDLGGISLIGSLL-NDPNPSVREKALNALNNLSVNDE 86 (254)
T ss_pred cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChh-HHHHHHHcCCHHHHHHHc-CCCChHHHHHHHHHHHhcCCChh
Confidence 455678999999985 689999999999999876664 789999999999999999 78899999999999999987743
Q ss_pred CCchhhhhchHHHHHHhhcC--CChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHh
Q 014945 233 QPLFEQTRPALPALERLIHS--NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI 310 (415)
Q Consensus 233 ~~~~~~~~~~l~~l~~lL~~--~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl 310 (415)
... .+...++.+.+.+.+ -|..++..++++|.+++..++. +.++ .+.++.++.+|.+++..++..++++|.|+
T Consensus 87 n~~--~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~--~~~l-~~~i~~ll~LL~~G~~~~k~~vLk~L~nL 161 (254)
T PF04826_consen 87 NQE--QIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDY--HHML-ANYIPDLLSLLSSGSEKTKVQVLKVLVNL 161 (254)
T ss_pred hHH--HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcch--hhhH-HhhHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 322 334567766665443 3788999999999999866543 3344 34689999999999999999999999999
Q ss_pred hcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcC--CH-----------HHHHHHH-Hc-CCHHHHHH
Q 014945 311 VTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG--NV-----------NQIQAII-EA-GIIGPLVN 375 (415)
Q Consensus 311 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~--~~-----------~~~~~l~-~~-~~i~~L~~ 375 (415)
+..++ .+..++..+++..++.+++...+.++...+.+.+.||..+ .+ +....++ +. .+...|..
T Consensus 162 S~np~-~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~l~~ 240 (254)
T PF04826_consen 162 SENPD-MTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLFGESSQLAKKLQA 240 (254)
T ss_pred ccCHH-HHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHHccHHHHHHHHHH
Confidence 98654 6778899999999999998876788899999999999653 11 1111111 11 24556666
Q ss_pred HhccCCHHHHHH
Q 014945 376 LLLNAEFEIKKE 387 (415)
Q Consensus 376 ~l~~~~~~v~~~ 387 (415)
+..++|++|+..
T Consensus 241 l~~h~d~ev~~~ 252 (254)
T PF04826_consen 241 LANHPDPEVKEQ 252 (254)
T ss_pred HHcCCCHHHhhh
Confidence 666677777654
No 32
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.53 E-value=2.3e-11 Score=111.61 Aligned_cols=321 Identities=12% Similarity=0.086 Sum_probs=225.8
Q ss_pred cHHHHHHhhcC-CCHHHHHHHHHHHHHHhccCCCCchhHHHh-----cCchHHHHHhhcCCCChHHHHHHHHHHHHHhCC
Q 014945 72 SLPAMVAGVWS-DDRNIQLDATTQFRKLLSIERSPPINEVIQ-----SGVVPRFIEFLSRDDFPQLQFEAAWALTNIASG 145 (415)
Q Consensus 72 ~i~~l~~~l~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~-----~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~ 145 (415)
....+++++.. ..++.....+..+..++... +.....+.+ .+....++.+|..++ .-+...|+.+|+.++..
T Consensus 54 y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~-~~~~~~f~~~~~~~~~~~~~fl~lL~~~d-~~i~~~a~~iLt~l~~~ 131 (429)
T cd00256 54 YVKTFVNLLSQIDKDDTVRYVLTLIDDMLQED-DTRVKLFHDDALLKKKTWEPFFNLLNRQD-QFIVHMSFSILAKLACF 131 (429)
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc-hHHHHHHHHHhhccccchHHHHHHHcCCc-hhHHHHHHHHHHHHHhc
Confidence 45667777774 56778888888888888753 333444554 356778888998877 88999999999998875
Q ss_pred CchhhHHHHhCCChHHHHHhhCCC-CHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccch-hHhHHHHHHHH
Q 014945 146 TSENTRVVIDHGAVPIFVRLLSSP-TDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA-KLSMLRNATWT 223 (415)
Q Consensus 146 ~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~-~~~~~~~a~~~ 223 (415)
++.........-.++.+...+.++ +...+..|+.+|..+....+ +|..+.+.++++.|+.+|.... +.+++..++.+
T Consensus 132 ~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~-~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~ 210 (429)
T cd00256 132 GLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDE-YRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFC 210 (429)
T ss_pred CccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCch-HHHHHHHccCHHHHHHHHhhccccHHHHHHHHHH
Confidence 443222111111334455556543 46678889999999987776 7888989999999999996544 67899999999
Q ss_pred HHHhhhCCCCCchhhhhchHHHHHHhhcCC-ChhHHHHHHHHHHHhccCC------hHHHHHHHHcCcHHHHHHhcCC--
Q 014945 224 LSNFCRGKPQPLFEQTRPALPALERLIHSN-DDEVLTDACWALSYLSDGT------NDKIQAVIEAGVCPRLVELLRH-- 294 (415)
Q Consensus 224 l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~-d~~v~~~a~~~l~~l~~~~------~~~~~~~~~~~~i~~L~~lL~~-- 294 (415)
++-++...+........+++|.++.+++.. -++|..-++.++.|+...+ ......+++.|+.+ ++..|..
T Consensus 211 lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~-~l~~L~~rk 289 (429)
T cd00256 211 IWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLK-TLQSLEQRK 289 (429)
T ss_pred HHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHH-HHHHHhcCC
Confidence 999988754333334468999999999765 5778889999999998643 22334577777755 4444432
Q ss_pred -CChhhHHHHHHHHHHhh-------cCCh------------------------HHHHHHHHC--CChHHHHHHhcCCCcc
Q 014945 295 -PSPSVLIPALRTVGNIV-------TGDD------------------------MQTQCIINH--QALPCLLDLLTQNYKK 340 (415)
Q Consensus 295 -~~~~v~~~a~~~l~nl~-------~~~~------------------------~~~~~~~~~--~~l~~L~~ll~~~~~~ 340 (415)
.|+++.. .+..|.... +..+ ++...+-+. .++..|..+|..+.++
T Consensus 290 ~~DedL~e-dl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~ 368 (429)
T cd00256 290 YDDEDLTD-DLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDP 368 (429)
T ss_pred CCcHHHHH-HHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCc
Confidence 2333322 111211111 0111 222222232 3578899999655488
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhC
Q 014945 341 SIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 397 (415)
Q Consensus 341 ~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~ 397 (415)
.+..-||.=++.++...|..+..+-+.|+=..++++|.++|++|+.+|+.|+..+..
T Consensus 369 ~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~ 425 (429)
T cd00256 369 IILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMV 425 (429)
T ss_pred ceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999888877777788999999999999999999999999987743
No 33
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.52 E-value=4.7e-13 Score=124.03 Aligned_cols=308 Identities=14% Similarity=0.148 Sum_probs=211.4
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHh
Q 014945 76 MVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVID 155 (415)
Q Consensus 76 l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~ 155 (415)
.++.+...++-++-..-..+..+++...-... ..++|.|.++|.+++ ...+..|..+|..++.++++.-+.-..
T Consensus 95 ~l~~lgd~~~lIr~tvGivITTI~s~~~~~~w-----pelLp~L~~~L~s~d-~n~~EgA~~AL~KIcEDsa~~lds~~~ 168 (885)
T KOG2023|consen 95 CLHGLGDASPLIRATVGIVITTIASTGGLQHW-----PELLPQLCELLDSPD-YNTCEGAFGALQKICEDSAQFLDSDVL 168 (885)
T ss_pred HHhhccCchHHHHhhhhheeeeeecccccccc-----hhHHHHHHHHhcCCc-ccccchhHHHHHHHHhhhHHHHhhhcc
Confidence 44455555554443344445555543321111 346899999999998 889999999999999987766544222
Q ss_pred ----CCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCC
Q 014945 156 ----HGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK 231 (415)
Q Consensus 156 ----~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~ 231 (415)
.-.+|.++++.+++++.+|..|+.|+..+....+..-..-++ .+++.+..+- .+.+++++++.|.++..|....
T Consensus 169 ~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD-~Fle~lFala-nD~~~eVRk~vC~alv~Llevr 246 (885)
T KOG2023|consen 169 TRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHID-KFLEILFALA-NDEDPEVRKNVCRALVFLLEVR 246 (885)
T ss_pred cCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHH-HHHHHHHHHc-cCCCHHHHHHHHHHHHHHHHhc
Confidence 136899999999999999999999999988665532111111 1445555555 7889999999999999999887
Q ss_pred CCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHH--cCcHHHHHHhcCCCC-------------
Q 014945 232 PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIE--AGVCPRLVELLRHPS------------- 296 (415)
Q Consensus 232 ~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~--~~~i~~L~~lL~~~~------------- 296 (415)
+..-.....++++.+++..++.|++|.-.||.....++..+.. ...+.. ..++|.|++-+...+
T Consensus 247 ~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~-~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~ 325 (885)
T KOG2023|consen 247 PDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPIC-KEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDE 325 (885)
T ss_pred HHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCc-HHHHHHHHHHHHHHHHccCccccccHHHhcCccccc
Confidence 7777777788889999888999999999999999888876532 121211 145555555442110
Q ss_pred -------------------------------------------hhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHH
Q 014945 297 -------------------------------------------PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDL 333 (415)
Q Consensus 297 -------------------------------------------~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~l 333 (415)
|.+|.....+|.-++.-.. +.++. -++|.|-..
T Consensus 326 ~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~---~elL~-~l~PlLk~~ 401 (885)
T KOG2023|consen 326 SVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFG---DELLP-ILLPLLKEH 401 (885)
T ss_pred cCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhH---HHHHH-HHHHHHHHH
Confidence 3344443333333332111 11222 345666666
Q ss_pred hcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhCC
Q 014945 334 LTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSG 398 (415)
Q Consensus 334 l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~ 398 (415)
|.+. +..+|+.+..+++.|+.|+-...-.-+. .++|.|+.+|.+..+-||...||+|+..+..
T Consensus 402 L~~~-~W~vrEagvLAlGAIAEGcM~g~~p~Lp-eLip~l~~~L~DKkplVRsITCWTLsRys~w 464 (885)
T KOG2023|consen 402 LSSE-EWKVREAGVLALGAIAEGCMQGFVPHLP-ELIPFLLSLLDDKKPLVRSITCWTLSRYSKW 464 (885)
T ss_pred cCcc-hhhhhhhhHHHHHHHHHHHhhhcccchH-HHHHHHHHHhccCccceeeeeeeeHhhhhhh
Confidence 7777 8999999999999999875443322222 3799999999999999999999999998754
No 34
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.51 E-value=4.1e-11 Score=107.57 Aligned_cols=319 Identities=13% Similarity=0.144 Sum_probs=236.6
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhh
Q 014945 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 150 (415)
Q Consensus 71 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~ 150 (415)
..+..|++.|..++.++.......|.++.-. .++...+.+.|++..|++++...+ ++++..++..+.|++.+ ...+
T Consensus 304 niV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf--~eNK~~M~~~~iveKL~klfp~~h-~dL~~~tl~LlfNlSFD-~glr 379 (791)
T KOG1222|consen 304 NIVAMLVKALDRSNSSLLTLVIKFLKKLSIF--DENKIVMEQNGIVEKLLKLFPIQH-PDLRKATLMLLFNLSFD-SGLR 379 (791)
T ss_pred hHHHHHHHHHcccchHHHHHHHHHHHHhhhh--ccchHHHHhccHHHHHHHhcCCCC-HHHHHHHHHHhhhcccc-cccc
Confidence 3567899999988888888888888887443 467778889999999999999999 99999999999999996 6678
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhC
Q 014945 151 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 230 (415)
Q Consensus 151 ~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~ 230 (415)
..++..|.+|.+..++.++.. ...|+..+..++.++. .+.++.....++.+...+....+..+-...+...-|+|..
T Consensus 380 ~KMv~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~dD~-~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~ln 456 (791)
T KOG1222|consen 380 PKMVNGGLLPHLASLLDSDTK--HGIALNMLYHLSCDDD-AKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLN 456 (791)
T ss_pred HHHhhccchHHHHHHhCCccc--chhhhhhhhhhccCcH-HHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhc
Confidence 889999999999999987543 3468888899988776 6778887788888887765555555544444444556544
Q ss_pred CCCCchhh-------------------------------------hhchHHHHHHhhcC-CChhHHHHHHHHHHHhccCC
Q 014945 231 KPQPLFEQ-------------------------------------TRPALPALERLIHS-NDDEVLTDACWALSYLSDGT 272 (415)
Q Consensus 231 ~~~~~~~~-------------------------------------~~~~l~~l~~lL~~-~d~~v~~~a~~~l~~l~~~~ 272 (415)
....+... .-..+.-|...+.. +++.....++.+++++.-.+
T Consensus 457 kRNaQlvceGqgL~~LM~ra~k~~D~lLmK~vRniSqHeg~tqn~FidyvgdLa~i~~nd~~E~F~~EClGtlanL~v~d 536 (791)
T KOG1222|consen 457 KRNAQLVCEGQGLDLLMERAIKSRDLLLMKVVRNISQHEGATQNMFIDYVGDLAGIAKNDNSESFGLECLGTLANLKVTD 536 (791)
T ss_pred cccceEEecCcchHHHHHHHhcccchHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHhhcccCC
Confidence 32222110 01111222233333 34667788889999998766
Q ss_pred hHHHHHHHHcCcHHHHHHhcCCC--ChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCC-CccchHHHHHHH
Q 014945 273 NDKIQAVIEAGVCPRLVELLRHP--SPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN-YKKSIKKEACWT 349 (415)
Q Consensus 273 ~~~~~~~~~~~~i~~L~~lL~~~--~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~~v~~~a~~~ 349 (415)
-+....+-+.+.+|.+-..|... ..++......++|.++... .....+..+|+++.++++|+.. ++.+......++
T Consensus 537 ldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~-~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyV 615 (791)
T KOG1222|consen 537 LDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDL-DCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYV 615 (791)
T ss_pred CCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhh-HHHHHhCccccHHHHHHHHHhhcccchHHHHHHHH
Confidence 55656566778999999998653 3456677777888887643 3556666779999999999764 266777888888
Q ss_pred HHHHhcCCHHHHHHHH-HcCCHHHHHHHhccCCHHHHHHHHHHHHHHhCC
Q 014945 350 ISNITAGNVNQIQAII-EAGIIGPLVNLLLNAEFEIKKEAAWAISNATSG 398 (415)
Q Consensus 350 l~nl~~~~~~~~~~l~-~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~ 398 (415)
+..+..+ ...+..++ +...-..|++++.+.+.++|+.+-.+|--++.+
T Consensus 616 F~Q~l~H-e~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~ 664 (791)
T KOG1222|consen 616 FLQFLKH-ELTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEH 664 (791)
T ss_pred HHHHHHH-HHHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHh
Confidence 8888876 44455666 455677899999999999999999999988877
No 35
>PF01749 IBB: Importin beta binding domain; InterPro: IPR002652 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. Members of the importin-alpha (karyopherin-alpha) family can form heterodimers with importin-beta. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Proteins can contain one (monopartite) or two (bipartite) NLS motifs. Importin-alpha contains several armadillo (ARM) repeats, which produce a curving structure with two NLS-binding sites, a major one close to the N terminus and a minor one close to the C terminus. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. The N-terminal importin-beta-binding (IBB) domain of importin-alpha contains an auto-regulatory region that mimics the NLS motif []. The release of importin-beta frees the auto-regulatory region on importin-alpha to loop back and bind to the major NLS-binding site, causing the cargo to be released []. This entry represents the N-terminal IBB domain of importin-alpha that contains the auto-regulatory region. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006606 protein import into nucleus, 0006886 intracellular protein transport, 0005634 nucleus, 0005737 cytoplasm; PDB: 1BK5_B 1UN0_A 1WA5_B 2C1T_A 1EE4_A 1BK6_A 1EE5_A 3TJ3_A 2JDQ_A 3FEY_C ....
Probab=99.48 E-value=1.1e-14 Score=105.73 Aligned_cols=88 Identities=45% Similarity=0.623 Sum_probs=60.2
Q ss_pred CCccHHHhhhccC-CCCchHHHHhHHHHHHHHHHHhhhHHHHhhhhccccCCCCCC----ch-hhhhhhhhccHHHHHHh
Q 014945 6 NARTEVRRSKYKV-AVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQPLT----NS-AALDNKKLESLPAMVAG 79 (415)
Q Consensus 6 ~~~~~~~~~~~k~-~~~~~~~r~~r~~~~~~lRk~~r~~~~~~~R~~~~~~~~~~~----~~-~~~~~~~~~~i~~l~~~ 79 (415)
....+.|++.||+ |++++|+|+||+++.++|||+||+|.|.|||++.......++ .. ..........++.++..
T Consensus 3 ~~~~~~R~~~yK~~g~d~~e~RrrRee~~veLRK~KReE~l~KRRn~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~ 82 (97)
T PF01749_consen 3 SKKPENRRKSYKNKGKDAEEMRRRREEEQVELRKQKREEQLQKRRNINMADEESSSEESESDQNSSAQQLNEELPEMVAG 82 (97)
T ss_dssp ----GGGGGGSTTTT-SHHHHHHHCCCCHHHHCHHHHHCCHSCCHT-----------------TCCCCS--HHHHHHHHH
T ss_pred ccCHHHHHHHHccCCCChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccccccccccccccccccccccHHHHHh
Confidence 3467889999999 699999999999999999999999999999998654433211 00 01112223467889999
Q ss_pred hcCCCHHHHHHHHH
Q 014945 80 VWSDDRNIQLDATT 93 (415)
Q Consensus 80 l~~~~~~~~~~a~~ 93 (415)
+.|+|+..++.|..
T Consensus 83 v~S~d~~~ql~Atq 96 (97)
T PF01749_consen 83 VNSDDPEVQLEATQ 96 (97)
T ss_dssp HTSSCHHHHHHHHH
T ss_pred cCCCCHHHHHHhhC
Confidence 99999999998875
No 36
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.47 E-value=8e-11 Score=109.66 Aligned_cols=327 Identities=15% Similarity=0.163 Sum_probs=216.8
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCC-ChHHHHHHHHHHHHHhCCCchhhHHHH
Q 014945 76 MVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDD-FPQLQFEAAWALTNIASGTSENTRVVI 154 (415)
Q Consensus 76 l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~-~~~i~~~a~~~L~~l~~~~~~~~~~~~ 154 (415)
++..+...+|+....|..-..+.+.+. +++...+++.|.++.++.+++..+ .++.+.+.+-++...+.+.......+.
T Consensus 14 ~l~~L~~~dpe~lvrai~~~kN~vig~-~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL 92 (678)
T KOG1293|consen 14 LLYRLLHLDPEQLVRAIYMSKNLVIGF-TDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVL 92 (678)
T ss_pred HHHhhhcCCHHHHHHHHHHhcchhhcC-CCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHH
Confidence 444555677888888999999988775 566667999999999999998755 256777778888888888888889999
Q ss_pred hCCChHHHHHhhCCCC-HHHHHHHHHHHHHhcCCCchhHHHHH---hcCChHHHHHHhccchhHhHHHHHHHH-------
Q 014945 155 DHGAVPIFVRLLSSPT-DDVREQAVWALGNVAGDSPKCRDLVL---SNGALMPLLAQFNEHAKLSMLRNATWT------- 223 (415)
Q Consensus 155 ~~g~i~~L~~ll~~~~-~~v~~~a~~~L~nl~~~~~~~~~~~~---~~g~i~~L~~~l~~~~~~~~~~~a~~~------- 223 (415)
+.+.++.|.+++.+++ ..+.+..+.++.++...++.. +... ...++..+..++ ..+.......-+..
T Consensus 93 ~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q-~~~~s~~~~sIi~~~s~l~-s~~lk~~~~l~~~~~a~~s~~ 170 (678)
T KOG1293|consen 93 RIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQ-DKKMSLHLKSIIVKFSLLY-SIELKYISRLDVSRAAHLSST 170 (678)
T ss_pred HHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhccccc-ccchhhhHHHHHHHHHHHH-hhhhhhhhhhhhhhhcccccc
Confidence 9999999999999988 889999999999998766422 2111 111222222222 11111111111111
Q ss_pred -------------------------------HHHhhhCC---CCCch--hhh------hchHH--HHHHhhcCCChhHHH
Q 014945 224 -------------------------------LSNFCRGK---PQPLF--EQT------RPALP--ALERLIHSNDDEVLT 259 (415)
Q Consensus 224 -------------------------------l~~l~~~~---~~~~~--~~~------~~~l~--~l~~lL~~~d~~v~~ 259 (415)
+..++++. -..+. ... .++.+ .+..++++++..-+.
T Consensus 171 ~~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l 250 (678)
T KOG1293|consen 171 KDHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERL 250 (678)
T ss_pred chhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHH
Confidence 22222111 00000 011 11222 122233333333333
Q ss_pred HHHHHHHHhccCC-------------------------------------------------------------------
Q 014945 260 DACWALSYLSDGT------------------------------------------------------------------- 272 (415)
Q Consensus 260 ~a~~~l~~l~~~~------------------------------------------------------------------- 272 (415)
.++.++.++...+
T Consensus 251 ~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~ 330 (678)
T KOG1293|consen 251 RSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTT 330 (678)
T ss_pred HHHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhH
Confidence 3444443332210
Q ss_pred --------------h----------------------------------------------HHHH-------------HH
Q 014945 273 --------------N----------------------------------------------DKIQ-------------AV 279 (415)
Q Consensus 273 --------------~----------------------------------------------~~~~-------------~~ 279 (415)
+ .... ..
T Consensus 331 ~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~a 410 (678)
T KOG1293|consen 331 TELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSA 410 (678)
T ss_pred HHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHH
Confidence 0 0000 00
Q ss_pred H-----HcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHh
Q 014945 280 I-----EAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNIT 354 (415)
Q Consensus 280 ~-----~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~ 354 (415)
+ +..+++.+++++..++..+...++++|.|++.........++..|+++.+..++.+. ++.+|+.+.|+|.++.
T Consensus 411 L~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~-~~n~r~~~~~~Lr~l~ 489 (678)
T KOG1293|consen 411 LRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDP-DFNSRANSLWVLRHLM 489 (678)
T ss_pred HHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCC-CchHHHHHHHHHHHHH
Confidence 1 124567788888888888999999999999987777888899999999999999999 9999999999999999
Q ss_pred cCCHHHHHHHHHcCC-HHHHHHHhccCCHHHHHHHHHHHHHHhCCCCHHHHHHH
Q 014945 355 AGNVNQIQAIIEAGI-IGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKYK 407 (415)
Q Consensus 355 ~~~~~~~~~l~~~~~-i~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l 407 (415)
-++.+..+......+ ...+..+..++++.|++.+...|.|++.+ ..+.+.++
T Consensus 490 f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~-~~~svdfl 542 (678)
T KOG1293|consen 490 FNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCN-SRKSVDFL 542 (678)
T ss_pred hcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcC-cHHHHHHH
Confidence 876665555544444 45666677889999999999999999976 44556666
No 37
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.43 E-value=3.3e-11 Score=118.24 Aligned_cols=295 Identities=18% Similarity=0.198 Sum_probs=213.8
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhh
Q 014945 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 150 (415)
Q Consensus 71 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~ 150 (415)
...+.+++.+.++|...+..+--++..+.... +. ..+. +++.+.+-+.+++ +.++..|++++++++. ++..
T Consensus 42 ~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~--~~-~~~l---~~n~l~kdl~~~n-~~~~~lAL~~l~~i~~--~~~~ 112 (526)
T PF01602_consen 42 FLFMEVIKLISSKDLELKRLGYLYLSLYLHED--PE-LLIL---IINSLQKDLNSPN-PYIRGLALRTLSNIRT--PEMA 112 (526)
T ss_dssp STHHHHHCTCSSSSHHHHHHHHHHHHHHTTTS--HH-HHHH---HHHHHHHHHCSSS-HHHHHHHHHHHHHH-S--HHHH
T ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcc--hh-HHHH---HHHHHHHhhcCCC-HHHHHHHHhhhhhhcc--cchh
Confidence 46788999999999999998888888876432 21 1111 4688888888888 9999999999999985 5554
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhC
Q 014945 151 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 230 (415)
Q Consensus 151 ~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~ 230 (415)
.. +++.+.+++.++++.||..|+.++..+....|.. +... .++.+..++ .+.++.++..|+.++..+ ..
T Consensus 113 ~~-----l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~---~~~~-~~~~l~~lL-~d~~~~V~~~a~~~l~~i-~~ 181 (526)
T PF01602_consen 113 EP-----LIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL---VEDE-LIPKLKQLL-SDKDPSVVSAALSLLSEI-KC 181 (526)
T ss_dssp HH-----HHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC---HHGG-HHHHHHHHT-THSSHHHHHHHHHHHHHH-HC
T ss_pred hH-----HHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH---HHHH-HHHHHhhhc-cCCcchhHHHHHHHHHHH-cc
Confidence 43 4778888999999999999999999998766542 2222 577888888 778899999999999999 22
Q ss_pred CCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHh
Q 014945 231 KPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI 310 (415)
Q Consensus 231 ~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl 310 (415)
.+..........++.+..++...++..+..++..+..++...+..... ..+++.+..++.+.++.+...++.++..+
T Consensus 182 ~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~~~~V~~e~~~~i~~l 258 (526)
T PF01602_consen 182 NDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSSSPSVVYEAIRLIIKL 258 (526)
T ss_dssp THHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 211111444566677777778889999999999999988766654311 34677888888888888888888888877
Q ss_pred hcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHH
Q 014945 311 VTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAW 390 (415)
Q Consensus 311 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~ 390 (415)
....+ .-..+++.|..++.++ ++.++..++.++..++...+..+. +....+..+..+++..++..++.
T Consensus 259 ~~~~~------~~~~~~~~L~~lL~s~-~~nvr~~~L~~L~~l~~~~~~~v~-----~~~~~~~~l~~~~d~~Ir~~~l~ 326 (526)
T PF01602_consen 259 SPSPE------LLQKAINPLIKLLSSS-DPNVRYIALDSLSQLAQSNPPAVF-----NQSLILFFLLYDDDPSIRKKALD 326 (526)
T ss_dssp SSSHH------HHHHHHHHHHHHHTSS-SHHHHHHHHHHHHHHCCHCHHHHG-----THHHHHHHHHCSSSHHHHHHHHH
T ss_pred hcchH------HHHhhHHHHHHHhhcc-cchhehhHHHHHHHhhcccchhhh-----hhhhhhheecCCCChhHHHHHHH
Confidence 76433 1225677888888877 888888888888888875533222 12222333333778888888888
Q ss_pred HHHHHhCCCC
Q 014945 391 AISNATSGGS 400 (415)
Q Consensus 391 aL~nl~~~~~ 400 (415)
.|.+++...+
T Consensus 327 lL~~l~~~~n 336 (526)
T PF01602_consen 327 LLYKLANESN 336 (526)
T ss_dssp HHHHH--HHH
T ss_pred HHhhcccccc
Confidence 8888886543
No 38
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.43 E-value=9.3e-11 Score=107.69 Aligned_cols=280 Identities=14% Similarity=0.130 Sum_probs=204.5
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhH
Q 014945 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 151 (415)
Q Consensus 72 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~ 151 (415)
....++..|+++|.-++..|+..+..+++.. ..........-+++.|...++++++...+..++.+|..+... +++|.
T Consensus 102 ~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~-~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~-~~~R~ 179 (429)
T cd00256 102 TWEPFFNLLNRQDQFIVHMSFSILAKLACFG-LAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRV-DEYRF 179 (429)
T ss_pred chHHHHHHHcCCchhHHHHHHHHHHHHHhcC-ccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCC-chHHH
Confidence 4567788888899999999999999998754 222221111114556677777654468888899999999985 88999
Q ss_pred HHHhCCChHHHHHhhCCC--CHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhh
Q 014945 152 VVIDHGAVPIFVRLLSSP--TDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 229 (415)
Q Consensus 152 ~~~~~g~i~~L~~ll~~~--~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~ 229 (415)
.+.+.++++.|+.+|+.. +..++..++.|++-++.+.+ ........+.++.+++++..+..+.+.+-++.++.|+..
T Consensus 180 ~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~-~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~ 258 (429)
T cd00256 180 AFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPH-AAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLIS 258 (429)
T ss_pred HHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHH-HHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Confidence 999999999999999762 56889999999999998776 445666788999999999888899999999999999998
Q ss_pred CCC----CC--chhhhhchHHHHHHhhcC---CChhHHHHHHHHHH-------Hhcc---------------CCh-----
Q 014945 230 GKP----QP--LFEQTRPALPALERLIHS---NDDEVLTDACWALS-------YLSD---------------GTN----- 273 (415)
Q Consensus 230 ~~~----~~--~~~~~~~~l~~l~~lL~~---~d~~v~~~a~~~l~-------~l~~---------------~~~----- 273 (415)
... .. ....+...++.++..|.. .|+++..+.-..-. .++. .+.
T Consensus 259 ~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~ 338 (429)
T cd00256 259 KRVDREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEK 338 (429)
T ss_pred cccccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCch
Confidence 641 11 112223345555666643 46666544322211 1111 010
Q ss_pred ---HHHHHHHHc--CcHHHHHHhcC-CCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHH
Q 014945 274 ---DKIQAVIEA--GVCPRLVELLR-HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEAC 347 (415)
Q Consensus 274 ---~~~~~~~~~--~~i~~L~~lL~-~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~ 347 (415)
++...+-+. .++..|+.+|. +.++.+..-||.=||.++...|..+..+-+.|+-..++.++.++ +++||.+|.
T Consensus 339 FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~-d~~Vr~eAL 417 (429)
T cd00256 339 FWRENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHE-DPNVRYEAL 417 (429)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCC-CHHHHHHHH
Confidence 112223333 35778899984 56788888999999999999888888777889999999999999 999999999
Q ss_pred HHHHHHhc
Q 014945 348 WTISNITA 355 (415)
Q Consensus 348 ~~l~nl~~ 355 (415)
.++..+..
T Consensus 418 ~avQklm~ 425 (429)
T cd00256 418 LAVQKLMV 425 (429)
T ss_pred HHHHHHHH
Confidence 99987764
No 39
>PTZ00429 beta-adaptin; Provisional
Probab=99.41 E-value=7.9e-10 Score=109.28 Aligned_cols=294 Identities=15% Similarity=0.101 Sum_probs=202.4
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhh
Q 014945 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 150 (415)
Q Consensus 71 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~ 150 (415)
|.+..+.+.|++.+...+..+++.+....... .+.. .+++..++++.+++ .+++.-....+.+++...++..
T Consensus 32 ge~~ELr~~L~s~~~~~kk~alKkvIa~mt~G-~DvS------~LF~dVvk~~~S~d-~elKKLvYLYL~~ya~~~pela 103 (746)
T PTZ00429 32 GEGAELQNDLNGTDSYRKKAAVKRIIANMTMG-RDVS------YLFVDVVKLAPSTD-LELKKLVYLYVLSTARLQPEKA 103 (746)
T ss_pred chHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC-CCch------HHHHHHHHHhCCCC-HHHHHHHHHHHHHHcccChHHH
Confidence 45677888888888888888887555444332 2222 24677888888888 8999999999999988666543
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhC
Q 014945 151 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 230 (415)
Q Consensus 151 ~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~ 230 (415)
-. +++.+.+=+.++++.+|..|++++++|-... .-+. .+.++.+.+ .+.++-+++.|+.++..+...
T Consensus 104 lL-----aINtl~KDl~d~Np~IRaLALRtLs~Ir~~~--i~e~-----l~~~lkk~L-~D~~pYVRKtAalai~Kly~~ 170 (746)
T PTZ00429 104 LL-----AVNTFLQDTTNSSPVVRALAVRTMMCIRVSS--VLEY-----TLEPLRRAV-ADPDPYVRKTAAMGLGKLFHD 170 (746)
T ss_pred HH-----HHHHHHHHcCCCCHHHHHHHHHHHHcCCcHH--HHHH-----HHHHHHHHh-cCCCHHHHHHHHHHHHHHHhh
Confidence 22 3677888888999999999999999985321 1111 455667777 778999999999999999876
Q ss_pred CCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHh
Q 014945 231 KPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI 310 (415)
Q Consensus 231 ~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl 310 (415)
.+. .....+.++.|..+|.+.|+.|..+|+.++..+....+.... ...+.+..++..|...++..+...+.+|...
T Consensus 171 ~pe--lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~--l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y 246 (746)
T PTZ00429 171 DMQ--LFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIE--SSNEWVNRLVYHLPECNEWGQLYILELLAAQ 246 (746)
T ss_pred Ccc--cccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhH--HHHHHHHHHHHHhhcCChHHHHHHHHHHHhc
Confidence 543 223356788899999999999999999999999866544332 2345577788888777777777888888664
Q ss_pred hcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcC-CHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHH
Q 014945 311 VTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAA 389 (415)
Q Consensus 311 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~-~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~ 389 (415)
.-.++... ..++..+...+++. ++.|.-+|+.++.++... +++.+..+... +-+.++.+ .+++++++-.++
T Consensus 247 ~P~~~~e~-----~~il~~l~~~Lq~~-N~AVVl~Aik~il~l~~~~~~~~~~~~~~r-l~~pLv~L-~ss~~eiqyvaL 318 (746)
T PTZ00429 247 RPSDKESA-----ETLLTRVLPRMSHQ-NPAVVMGAIKVVANLASRCSQELIERCTVR-VNTALLTL-SRRDAETQYIVC 318 (746)
T ss_pred CCCCcHHH-----HHHHHHHHHHhcCC-CHHHHHHHHHHHHHhcCcCCHHHHHHHHHH-HHHHHHHh-hCCCccHHHHHH
Confidence 33222222 24677788888888 899999999998888753 23333332221 22344444 234555665555
Q ss_pred HHHHHHhC
Q 014945 390 WAISNATS 397 (415)
Q Consensus 390 ~aL~nl~~ 397 (415)
..+.-++.
T Consensus 319 r~I~~i~~ 326 (746)
T PTZ00429 319 KNIHALLV 326 (746)
T ss_pred HHHHHHHH
Confidence 55544444
No 40
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.41 E-value=3e-10 Score=102.18 Aligned_cols=304 Identities=15% Similarity=0.134 Sum_probs=215.6
Q ss_pred CHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHH
Q 014945 84 DRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFV 163 (415)
Q Consensus 84 ~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~ 163 (415)
...+..-|+..|.+++.. ...-..+...+++..|++.|+.++ .++...+...|..++-- .+++..+.+.|++..|+
T Consensus 276 QeqLLrva~ylLlNlAed--~~~ElKMrrkniV~mLVKaLdr~n-~~Ll~lv~~FLkKLSIf-~eNK~~M~~~~iveKL~ 351 (791)
T KOG1222|consen 276 QEQLLRVAVYLLLNLAED--ISVELKMRRKNIVAMLVKALDRSN-SSLLTLVIKFLKKLSIF-DENKIVMEQNGIVEKLL 351 (791)
T ss_pred HHHHHHHHHHHHHHHhhh--hhHHHHHHHHhHHHHHHHHHcccc-hHHHHHHHHHHHHhhhh-ccchHHHHhccHHHHHH
Confidence 344555677788888642 233345788899999999999988 88888888999888875 67888899999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchH
Q 014945 164 RLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPAL 243 (415)
Q Consensus 164 ~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l 243 (415)
+++...+++++...+..+.|++.++. .|...+..|.+|.+..++.++... ..|+..+..++..+..........++
T Consensus 352 klfp~~h~dL~~~tl~LlfNlSFD~g-lr~KMv~~GllP~l~~ll~~d~~~---~iA~~~lYh~S~dD~~K~MfayTdci 427 (791)
T KOG1222|consen 352 KLFPIQHPDLRKATLMLLFNLSFDSG-LRPKMVNGGLLPHLASLLDSDTKH---GIALNMLYHLSCDDDAKAMFAYTDCI 427 (791)
T ss_pred HhcCCCCHHHHHHHHHHhhhcccccc-ccHHHhhccchHHHHHHhCCcccc---hhhhhhhhhhccCcHHHHHHHHHHHH
Confidence 99999999999999999999998887 678888999999999999544433 33555666676665555555556777
Q ss_pred HHHHHhhc-CCChhHHHHHHH--------------------------------------HHHHhccCChHHHHHHHHcCc
Q 014945 244 PALERLIH-SNDDEVLTDACW--------------------------------------ALSYLSDGTNDKIQAVIEAGV 284 (415)
Q Consensus 244 ~~l~~lL~-~~d~~v~~~a~~--------------------------------------~l~~l~~~~~~~~~~~~~~~~ 284 (415)
+.+.+.+- ..+.+|-.+.+. .+.+++.+.......+++ .
T Consensus 428 ~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~D~lLmK~vRniSqHeg~tqn~Fid--y 505 (791)
T KOG1222|consen 428 KLLMKDVLSGTGSEVDLALIALCINLCLNKRNAQLVCEGQGLDLLMERAIKSRDLLLMKVVRNISQHEGATQNMFID--Y 505 (791)
T ss_pred HHHHHHHHhcCCceecHHHHHHHHHHHhccccceEEecCcchHHHHHHHhcccchHHHHHHHHhhhccchHHHHHHH--H
Confidence 76665442 233333333222 223333332222222222 2
Q ss_pred HHHHHHhcC-CCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCC-ccchHHHHHHHHHHHhcCCHHHHH
Q 014945 285 CPRLVELLR-HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNY-KKSIKKEACWTISNITAGNVNQIQ 362 (415)
Q Consensus 285 i~~L~~lL~-~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~-~~~v~~~a~~~l~nl~~~~~~~~~ 362 (415)
+.-|...+. ++++.....++++++|+....-+..+.+.+.+++|.+-..|..+- .+++.-....+++.++.. ..+..
T Consensus 506 vgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d-~~cA~ 584 (791)
T KOG1222|consen 506 VGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARD-LDCAR 584 (791)
T ss_pred HHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhh-hHHHH
Confidence 333444443 345667888999999999877677777778899999999997652 345666777777777763 44455
Q ss_pred HHHHcCCHHHHHHHhcc--CCHHHHHHHHHHHHHHhCC
Q 014945 363 AIIEAGIIGPLVNLLLN--AEFEIKKEAAWAISNATSG 398 (415)
Q Consensus 363 ~l~~~~~i~~L~~~l~~--~~~~v~~~a~~aL~nl~~~ 398 (415)
.+..+|+++.|+++|+. .|.+.....+++...+..+
T Consensus 585 Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~H 622 (791)
T KOG1222|consen 585 LLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKH 622 (791)
T ss_pred HhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHH
Confidence 66689999999999986 5566777777777777655
No 41
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.40 E-value=8.8e-11 Score=120.85 Aligned_cols=230 Identities=18% Similarity=0.211 Sum_probs=151.9
Q ss_pred hcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchh
Q 014945 112 QSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 191 (415)
Q Consensus 112 ~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~ 191 (415)
+...++.|+..|.+++ +.+|..|+..|+.+.. .+.++.|...|.++++.++..|+.+|+.+....+
T Consensus 619 ~~~~~~~L~~~L~D~d-~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~-- 684 (897)
T PRK13800 619 DAPSVAELAPYLADPD-PGVRRTAVAVLTETTP-----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP-- 684 (897)
T ss_pred cchhHHHHHHHhcCCC-HHHHHHHHHHHhhhcc-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC--
Confidence 4556789999999998 9999999999998753 2468899999999999999999999988853221
Q ss_pred HHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCC--------Cch----hhh-----hchHHHHHHhhcCCC
Q 014945 192 RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQ--------PLF----EQT-----RPALPALERLIHSND 254 (415)
Q Consensus 192 ~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~--------~~~----~~~-----~~~l~~l~~lL~~~d 254 (415)
..+.+...| .++++.++..++.+|..+....+. .+. ... .+..+.|..++.+++
T Consensus 685 --------~~~~L~~~L-~~~d~~VR~~A~~aL~~~~~~~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l~D~~ 755 (897)
T PRK13800 685 --------PAPALRDHL-GSPDPVVRAAALDVLRALRAGDAALFAAALGDPDHRVRIEAVRALVSVDDVESVAGAATDEN 755 (897)
T ss_pred --------chHHHHHHh-cCCCHHHHHHHHHHHHhhccCCHHHHHHHhcCCCHHHHHHHHHHHhcccCcHHHHHHhcCCC
Confidence 112344445 445556666666555554311000 000 000 000122333444444
Q ss_pred hhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHh
Q 014945 255 DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLL 334 (415)
Q Consensus 255 ~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll 334 (415)
+.|+..++.+|+.+..... ..++.|..++.++++.++..|+.+|+.+.... .+.+.+...+
T Consensus 756 ~~VR~~aa~aL~~~~~~~~---------~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~----------~~~~~l~~aL 816 (897)
T PRK13800 756 REVRIAVAKGLATLGAGGA---------PAGDAVRALTGDPDPLVRAAALAALAELGCPP----------DDVAAATAAL 816 (897)
T ss_pred HHHHHHHHHHHHHhccccc---------hhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcc----------hhHHHHHHHh
Confidence 4444444444444432211 12567778888888888888888888875421 1234577888
Q ss_pred cCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHH
Q 014945 335 TQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNA 395 (415)
Q Consensus 335 ~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl 395 (415)
.++ ++.||..|+++|+.+.. ++ .++.|+.+|.++++.||..|+++|+.+
T Consensus 817 ~d~-d~~VR~~Aa~aL~~l~~--~~---------a~~~L~~~L~D~~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 817 RAS-AWQVRQGAARALAGAAA--DV---------AVPALVEALTDPHLDVRKAAVLALTRW 865 (897)
T ss_pred cCC-ChHHHHHHHHHHHhccc--cc---------hHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 888 88899999999987643 22 468899999999999999999999997
No 42
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=2.7e-10 Score=108.72 Aligned_cols=332 Identities=14% Similarity=0.165 Sum_probs=237.1
Q ss_pred cHHHHHHhhcC-CCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhh
Q 014945 72 SLPAMVAGVWS-DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 150 (415)
Q Consensus 72 ~i~~l~~~l~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~ 150 (415)
-+|.|+.+|+. .+++++..|+++|.++...- ++....+++.+.||.|++-|..-.+.++-++++.+|-.|+.. +.
T Consensus 212 lvp~Lv~LL~~E~n~DIMl~AcRaltyl~evl-P~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~---H~ 287 (1051)
T KOG0168|consen 212 LVPVLVALLSHEHNFDIMLLACRALTYLCEVL-PRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRR---HP 287 (1051)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHhhc-cchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhh---cc
Confidence 46889999985 57999999999999997654 566677889999999998777655689999999999999975 44
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCC--CchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhh
Q 014945 151 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGD--SPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC 228 (415)
Q Consensus 151 ~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~--~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~ 228 (415)
..+.++|++...+.+|+--...+++.|+.+..|+|.. ++++ +.+.+ .+|.|..+| +..+....++++-++..++
T Consensus 288 ~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f-~~v~e--alPlL~~lL-s~~D~k~ies~~ic~~ri~ 363 (1051)
T KOG0168|consen 288 KAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEF-HFVME--ALPLLTPLL-SYQDKKPIESVCICLTRIA 363 (1051)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc-hHHHH--HHHHHHHHH-hhccchhHHHHHHHHHHHH
Confidence 6788899999999999887888999999999999853 2222 44554 789999999 7778888899999999998
Q ss_pred hCC-CCCc---hhhhhchHHHHHHhhcCCC----hhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCC----
Q 014945 229 RGK-PQPL---FEQTRPALPALERLIHSND----DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPS---- 296 (415)
Q Consensus 229 ~~~-~~~~---~~~~~~~l~~l~~lL~~~d----~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~---- 296 (415)
... +.+. .....+++..+.++|.-.+ ..+-...++.+.-++.+.+.....+.+.++...|..+|...+
T Consensus 364 d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~n 443 (1051)
T KOG0168|consen 364 DGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSAN 443 (1051)
T ss_pred HhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCcCcc
Confidence 776 2222 2233677888888876543 345566677888888887766677777788777777774211
Q ss_pred ----------h-hhHHHHHHH-----------------------------------------------HHHhhc------
Q 014945 297 ----------P-SVLIPALRT-----------------------------------------------VGNIVT------ 312 (415)
Q Consensus 297 ----------~-~v~~~a~~~-----------------------------------------------l~nl~~------ 312 (415)
+ ++.+....+ ...+..
T Consensus 444 as~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~~~~~~~~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~ 523 (1051)
T KOG0168|consen 444 ASLHELLSRSPNELYELTSLIIELLPCLPVEGIFAVDCSLIYEIVNLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDT 523 (1051)
T ss_pred cccccccccCcHHHHHHHHHHheeecCCcccceeehhhhhhcccccccccccccCccccccccccchhhhhhhhhhccCc
Confidence 0 000000000 001111
Q ss_pred --------------------CChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhc-CCHHHHHHHHH-cCCH
Q 014945 313 --------------------GDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA-GNVNQIQAIIE-AGII 370 (415)
Q Consensus 313 --------------------~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~-~~~~~~~~l~~-~~~i 370 (415)
..++..+.++. .++|.|+++..+.-++.||..+..+|..+.. .+++-+..++. .++-
T Consensus 524 ~t~~~~~dkl~~~~r~~~l~nqpel~q~F~~-~llpVLveVYsSsA~~~VR~kcL~Ailrlvy~s~seli~slLk~~~vS 602 (1051)
T KOG0168|consen 524 GTSRKQQDKLNGSAREGLLKNQPELLQSFGK-DLLPVLVEVYSSSANPDVRYKCLSAILRLVYFSNSELIGSLLKNTNVS 602 (1051)
T ss_pred ccchhhhhhcCCchhhhhhhcCHHHHHHHHH-HHHHHHHHHHhccCCchhhHHHHHHHHHHHhhCCHHHHHHHHhcchHH
Confidence 00111121111 4688999998887799999999999999987 57888888885 4555
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhCCC
Q 014945 371 GPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKYKFFYVSRTC 415 (415)
Q Consensus 371 ~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~~g~ 415 (415)
..+--+|.+.|..|.--|+....-+...-+.-+..+| +..||
T Consensus 603 S~lAG~lsskD~~vlVgALQvAEiLmeKlpd~F~~~F---~REGV 644 (1051)
T KOG0168|consen 603 SHLAGMLSSKDLTVLVGALQVAEILMEKLPDTFSPSF---RREGV 644 (1051)
T ss_pred HHHHhhhhcCCCeeEeehHHHHHHHHHHhHHHhhhhH---hhhhH
Confidence 6666778888888777777766666655555555666 55553
No 43
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.36 E-value=1e-10 Score=110.52 Aligned_cols=319 Identities=16% Similarity=0.188 Sum_probs=210.0
Q ss_pred ccHHHHHHhhc----CCCHH-HHHHHHHHHHHHhccCCCCchhHHH-hcCchHHHHHhhcC-CCChHHHHHHHHHHHHHh
Q 014945 71 ESLPAMVAGVW----SDDRN-IQLDATTQFRKLLSIERSPPINEVI-QSGVVPRFIEFLSR-DDFPQLQFEAAWALTNIA 143 (415)
Q Consensus 71 ~~i~~l~~~l~----~~~~~-~~~~a~~~l~~l~~~~~~~~~~~~~-~~g~i~~L~~ll~~-~~~~~i~~~a~~~L~~l~ 143 (415)
+.+|.|+..|. .+.+. ++..++.++..+... -.+....- ...++..+++-... ..+..+|..|+.+|.|-.
T Consensus 125 n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~--i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsL 202 (859)
T KOG1241|consen 125 NQWPELIVTLVSNVGEEQASMVKESSLEALGYICED--IDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSL 202 (859)
T ss_pred hhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHcc--CCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHH
Confidence 45666666554 33443 677788888887432 22221111 23455555655543 333789999999998855
Q ss_pred CCCchhh-HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHH
Q 014945 144 SGTSENT-RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATW 222 (415)
Q Consensus 144 ~~~~~~~-~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~ 222 (415)
.-...+. ...-.+=++...+..-++++.+++..|..||..|..-.-.+-........+..-+..+ ++++.++.-.+..
T Consensus 203 ef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~am-ks~~deValQaiE 281 (859)
T KOG1241|consen 203 EFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAM-KSDNDEVALQAIE 281 (859)
T ss_pred HHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCcHHHHHHHHH
Confidence 4222111 1111123456666677789999999999999998754333323333333344444555 5788899999999
Q ss_pred HHHHhhhCCC-------------CCc--hh----hhhchHHHHHHhhcCC-------ChhHHHHHHHHHHHhccCChHHH
Q 014945 223 TLSNFCRGKP-------------QPL--FE----QTRPALPALERLIHSN-------DDEVLTDACWALSYLSDGTNDKI 276 (415)
Q Consensus 223 ~l~~l~~~~~-------------~~~--~~----~~~~~l~~l~~lL~~~-------d~~v~~~a~~~l~~l~~~~~~~~ 276 (415)
.++++|.... .++ .. ....++|.|+++|... |......|-.+|.-++....+.
T Consensus 282 FWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~- 360 (859)
T KOG1241|consen 282 FWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDD- 360 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhccc-
Confidence 9999986531 111 11 1246788888888441 2334455555565555332222
Q ss_pred HHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcC
Q 014945 277 QAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG 356 (415)
Q Consensus 277 ~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~ 356 (415)
++. -+++.+-+.+.++++.-+..|..++|.+..+.+.....-+..+++|.++.++.++ .-.++..++|+++.++.+
T Consensus 361 --Iv~-~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~-sl~VkdTaAwtlgrI~d~ 436 (859)
T KOG1241|consen 361 --IVP-HVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDP-SLWVKDTAAWTLGRIADF 436 (859)
T ss_pred --chh-hhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCc-hhhhcchHHHHHHHHHhh
Confidence 222 3566666778899999999999999999999887777777789999999999988 889999999999999987
Q ss_pred CHHHHHH-HHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhCC
Q 014945 357 NVNQIQA-IIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSG 398 (415)
Q Consensus 357 ~~~~~~~-l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~ 398 (415)
.++.+.. ....+.++.++.-|. ++|++..++||++.+|+..
T Consensus 437 l~e~~~n~~~l~~~l~~l~~gL~-DePrva~N~CWAf~~Laea 478 (859)
T KOG1241|consen 437 LPEAIINQELLQSKLSALLEGLN-DEPRVASNVCWAFISLAEA 478 (859)
T ss_pred chhhcccHhhhhHHHHHHHHHhh-hCchHHHHHHHHHHHHHHH
Confidence 6654322 223445666666665 5789999999999999943
No 44
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=99.34 E-value=2.1e-10 Score=101.73 Aligned_cols=311 Identities=14% Similarity=0.065 Sum_probs=215.2
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhH
Q 014945 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 151 (415)
Q Consensus 72 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~ 151 (415)
..+..++.|..+|.-....+.+.+..+++.. +.........=....|-..+++..+++....|++||-.+... ++.+.
T Consensus 115 ~~~~fl~ll~r~d~~iv~~~~~Ils~la~~g-~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~-~eyR~ 192 (442)
T KOG2759|consen 115 EWLSFLNLLNRQDTFIVEMSFRILSKLACFG-NCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRV-DEYRY 192 (442)
T ss_pred chHHHHHHHhcCChHHHHHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcC-cchhh
Confidence 3678899999999888888889999887654 222211000012344555566644478888999999999986 88999
Q ss_pred HHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhh
Q 014945 152 VVIDHGAVPIFVRLLSS--PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 229 (415)
Q Consensus 152 ~~~~~g~i~~L~~ll~~--~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~ 229 (415)
.++...++..++..+.+ .+..++-+.+.|++-++.+++.. ..+...+.++.|..++..+..+.+.+-++.++.|++.
T Consensus 193 ~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~a-e~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~ 271 (442)
T KOG2759|consen 193 AFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAA-EKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLD 271 (442)
T ss_pred eeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHH-HHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99988888889988833 57789999999999999887755 5567788999999999888899999999999999998
Q ss_pred CCCCCc------hhhhhchHHHHHHhhcC---CChhHHHHHHHHHHHhccCChHHHHHHHHc-CcHHHHHHhcCCCChhh
Q 014945 230 GKPQPL------FEQTRPALPALERLIHS---NDDEVLTDACWALSYLSDGTNDKIQAVIEA-GVCPRLVELLRHPSPSV 299 (415)
Q Consensus 230 ~~~~~~------~~~~~~~l~~l~~lL~~---~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~-~~i~~L~~lL~~~~~~v 299 (415)
..+... ...+..-++..++.|.. +|+++..+.-..-..|-.. .+.+-.- .....|-.-.-+-+|.-
T Consensus 272 k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~s----vq~LsSFDeY~sEl~sG~L~WSP~H 347 (442)
T KOG2759|consen 272 KGPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNS----VQDLSSFDEYKSELRSGRLEWSPVH 347 (442)
T ss_pred cCchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH----HHhhccHHHHHHHHHhCCcCCCccc
Confidence 764222 12233445555555543 5777766644333333211 1111000 00111111111223322
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHC--CChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHh
Q 014945 300 LIPALRTVGNIVTGDDMQTQCIINH--QALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLL 377 (415)
Q Consensus 300 ~~~a~~~l~nl~~~~~~~~~~~~~~--~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l 377 (415)
+..-.|- ++...+-+. .++..|+.+|+.+.+|.+-.-||.=++......|+....+.+-|+=..++++|
T Consensus 348 k~e~FW~---------eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Ll 418 (442)
T KOG2759|consen 348 KSEKFWR---------ENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLL 418 (442)
T ss_pred cccchHH---------HhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHh
Confidence 3222221 122222222 46889999999886799999999999999999999888888999999999999
Q ss_pred ccCCHHHHHHHHHHHHHHhCC
Q 014945 378 LNAEFEIKKEAAWAISNATSG 398 (415)
Q Consensus 378 ~~~~~~v~~~a~~aL~nl~~~ 398 (415)
.++|++|+.+|+.|+..+..+
T Consensus 419 nh~d~~Vry~ALlavQ~lm~~ 439 (442)
T KOG2759|consen 419 NHEDPEVRYHALLAVQKLMVH 439 (442)
T ss_pred cCCCchHHHHHHHHHHHHHhh
Confidence 999999999999999887643
No 45
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.31 E-value=6.6e-10 Score=109.04 Aligned_cols=289 Identities=19% Similarity=0.224 Sum_probs=215.1
Q ss_pred HHHHhhcCC--CHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHH
Q 014945 75 AMVAGVWSD--DRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRV 152 (415)
Q Consensus 75 ~l~~~l~~~--~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~ 152 (415)
++.+.+.+. +...+..++..+..+...+ .+.. .+.+..++++.+.+ ...+.-+--.+..+...+++....
T Consensus 8 el~~~~~~~~~~~~~~~~~l~kli~~~~~G-~~~~------~~~~~vi~l~~s~~-~~~Krl~yl~l~~~~~~~~~~~~l 79 (526)
T PF01602_consen 8 ELAKILNSFKIDISKKKEALKKLIYLMMLG-YDIS------FLFMEVIKLISSKD-LELKRLGYLYLSLYLHEDPELLIL 79 (526)
T ss_dssp HHHHHHHCSSTHHHHHHHHHHHHHHHHHTT----G------STHHHHHCTCSSSS-HHHHHHHHHHHHHHTTTSHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHcC-CCCc------hHHHHHHHHhCCCC-HHHHHHHHHHHHHHhhcchhHHHH
Confidence 344444444 6666777776665554333 2211 36788999999877 899999988999998876663222
Q ss_pred HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCC
Q 014945 153 VIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP 232 (415)
Q Consensus 153 ~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~ 232 (415)
++..+.+=+.++++.++..|+.++++++ .++.... .++.+..++ .++++.+++.|+.++..+....|
T Consensus 80 -----~~n~l~kdl~~~n~~~~~lAL~~l~~i~--~~~~~~~-----l~~~v~~ll-~~~~~~VRk~A~~~l~~i~~~~p 146 (526)
T PF01602_consen 80 -----IINSLQKDLNSPNPYIRGLALRTLSNIR--TPEMAEP-----LIPDVIKLL-SDPSPYVRKKAALALLKIYRKDP 146 (526)
T ss_dssp -----HHHHHHHHHCSSSHHHHHHHHHHHHHH---SHHHHHH-----HHHHHHHHH-HSSSHHHHHHHHHHHHHHHHHCH
T ss_pred -----HHHHHHHhhcCCCHHHHHHHHhhhhhhc--ccchhhH-----HHHHHHHHh-cCCchHHHHHHHHHHHHHhccCH
Confidence 4677888899999999999999999997 3322222 567778888 78888999999999999998754
Q ss_pred CCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhc
Q 014945 233 QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT 312 (415)
Q Consensus 233 ~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~ 312 (415)
..... . .++.+..++.+.|+.++..|+.++..+ ..++.... -.-...++.|..++...++..+..+++++..++.
T Consensus 147 ~~~~~--~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~-~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~ 221 (526)
T PF01602_consen 147 DLVED--E-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYK-SLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAP 221 (526)
T ss_dssp CCHHG--G-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHT-THHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTS
T ss_pred HHHHH--H-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhh-hhHHHHHHHhhhcccccchHHHHHHHHHHHhccc
Confidence 32211 1 689999999999999999999999999 33332211 1112356677777788999999999999999998
Q ss_pred CChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHH
Q 014945 313 GDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAI 392 (415)
Q Consensus 313 ~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL 392 (415)
..+..... ..+++.+..++++. ++.|.-+++.++..+....+ .-..+++.|..++.++++.++..++.+|
T Consensus 222 ~~~~~~~~---~~~i~~l~~~l~s~-~~~V~~e~~~~i~~l~~~~~------~~~~~~~~L~~lL~s~~~nvr~~~L~~L 291 (526)
T PF01602_consen 222 MEPEDADK---NRIIEPLLNLLQSS-SPSVVYEAIRLIIKLSPSPE------LLQKAINPLIKLLSSSDPNVRYIALDSL 291 (526)
T ss_dssp SSHHHHHH---HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHSSSHH------HHHHHHHHHHHHHTSSSHHHHHHHHHHH
T ss_pred CChhhhhH---HHHHHHHHHHhhcc-ccHHHHHHHHHHHHhhcchH------HHHhhHHHHHHHhhcccchhehhHHHHH
Confidence 77655421 35678899999988 99999999999998876422 2223788999999999999999999999
Q ss_pred HHHhCCC
Q 014945 393 SNATSGG 399 (415)
Q Consensus 393 ~nl~~~~ 399 (415)
..++...
T Consensus 292 ~~l~~~~ 298 (526)
T PF01602_consen 292 SQLAQSN 298 (526)
T ss_dssp HHHCCHC
T ss_pred HHhhccc
Confidence 9998764
No 46
>PTZ00429 beta-adaptin; Provisional
Probab=99.31 E-value=1.4e-08 Score=100.52 Aligned_cols=260 Identities=14% Similarity=0.123 Sum_probs=185.5
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhH
Q 014945 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 151 (415)
Q Consensus 72 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~ 151 (415)
.++.+++.+.++|...+..+...+.+++... + -..+. +++.|.+-+.+++ +.+|-.|++.++++-. ++..+
T Consensus 69 LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~--p-elalL---aINtl~KDl~d~N-p~IRaLALRtLs~Ir~--~~i~e 139 (746)
T PTZ00429 69 LFVDVVKLAPSTDLELKKLVYLYVLSTARLQ--P-EKALL---AVNTFLQDTTNSS-PVVRALAVRTMMCIRV--SSVLE 139 (746)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHcccC--h-HHHHH---HHHHHHHHcCCCC-HHHHHHHHHHHHcCCc--HHHHH
Confidence 5688889999999999999988888886432 2 11222 4788899999988 9999999999998776 44433
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCC
Q 014945 152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK 231 (415)
Q Consensus 152 ~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~ 231 (415)
. +++.+.+.+.+.++.||..|+.++.++...+|. .+...|.++.|..+| .+.++.++.+|+.+|..+....
T Consensus 140 ~-----l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe---lv~~~~~~~~L~~LL-~D~dp~Vv~nAl~aL~eI~~~~ 210 (746)
T PTZ00429 140 Y-----TLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVELL-NDNNPVVASNAAAIVCEVNDYG 210 (746)
T ss_pred H-----HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc---cccccchHHHHHHHh-cCCCccHHHHHHHHHHHHHHhC
Confidence 3 356778888999999999999999999876663 455667888899988 7899999999999999998765
Q ss_pred CCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhh
Q 014945 232 PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV 311 (415)
Q Consensus 232 ~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~ 311 (415)
+. ......+.+..+...|..-++..+...+.++......++... ..++..+...|++.++.|...|++++-++.
T Consensus 211 ~~-~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~-----~~il~~l~~~Lq~~N~AVVl~Aik~il~l~ 284 (746)
T PTZ00429 211 SE-KIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKESA-----ETLLTRVLPRMSHQNPAVVMGAIKVVANLA 284 (746)
T ss_pred ch-hhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHH-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHhc
Confidence 43 344446666777777777778888888888866543322221 246788889999999999999999999887
Q ss_pred cCC-hHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCH
Q 014945 312 TGD-DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV 358 (415)
Q Consensus 312 ~~~-~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~ 358 (415)
... +........ .+-+.++.++ ++ ++.++-.+...+.-+....|
T Consensus 285 ~~~~~~~~~~~~~-rl~~pLv~L~-ss-~~eiqyvaLr~I~~i~~~~P 329 (746)
T PTZ00429 285 SRCSQELIERCTV-RVNTALLTLS-RR-DAETQYIVCKNIHALLVIFP 329 (746)
T ss_pred CcCCHHHHHHHHH-HHHHHHHHhh-CC-CccHHHHHHHHHHHHHHHCH
Confidence 642 222222111 1223444443 34 56666666655555544333
No 47
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.30 E-value=3.2e-10 Score=107.18 Aligned_cols=323 Identities=19% Similarity=0.204 Sum_probs=222.9
Q ss_pred HHHHHHhhcC--CCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhh
Q 014945 73 LPAMVAGVWS--DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 150 (415)
Q Consensus 73 i~~l~~~l~~--~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~ 150 (415)
+-.++..... .+..++..|+.+|.+-+...+.-...+.-..=++...++..++++ .+++..|+.||..|..-..++.
T Consensus 174 LtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d-~~i~~aa~~ClvkIm~LyY~~m 252 (859)
T KOG1241|consen 174 LTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPD-EEIQVAAFQCLVKIMSLYYEFM 252 (859)
T ss_pred HHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCc-HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666654 456788889999988764432111222223335666777778888 9999999999999998777777
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchh--------------HHHHH----hcCChHHHHHHhcc-c
Q 014945 151 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC--------------RDLVL----SNGALMPLLAQFNE-H 211 (415)
Q Consensus 151 ~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~--------------~~~~~----~~g~i~~L~~~l~~-~ 211 (415)
...+....+..-+.-+.++++++.-+++...+++|.+.-+. ....+ -.+.+|.|+.+|.+ +
T Consensus 253 ~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqd 332 (859)
T KOG1241|consen 253 EPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQD 332 (859)
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCC
Confidence 77777677787888888999999999999999987432110 00001 12456777787753 1
Q ss_pred -----hhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHH
Q 014945 212 -----AKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCP 286 (415)
Q Consensus 212 -----~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~ 286 (415)
++......|.-||.-+++... ...+..++|.+-.-++++|..-+..+..+++.+..+.+.....-+-.++++
T Consensus 333 e~~d~DdWnp~kAAg~CL~l~A~~~~---D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp 409 (859)
T KOG1241|consen 333 EDDDDDDWNPAKAAGVCLMLFAQCVG---DDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALP 409 (859)
T ss_pred CCcccccCcHHHHHHHHHHHHHHHhc---ccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhH
Confidence 233455555555555554321 123357788888889999999999999999999988775544445567899
Q ss_pred HHHHhcCCCChhhHHHHHHHHHHhhcCChHHHH-HHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHH----
Q 014945 287 RLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQ-CIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQI---- 361 (415)
Q Consensus 287 ~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~-~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~---- 361 (415)
.++.++.++...++..+.|++|.++.+.++.+. .....+.++.++.-|.+ .|++...+||++.+++.+.++..
T Consensus 410 ~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D--ePrva~N~CWAf~~Laea~~eA~~s~~ 487 (859)
T KOG1241|consen 410 SIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND--EPRVASNVCWAFISLAEAAYEAAVSNG 487 (859)
T ss_pred HHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh--CchHHHHHHHHHHHHHHHHHHhccCCC
Confidence 999999988888999999999999987764332 12223566777777765 58999999999999994322211
Q ss_pred -----HHHHHcCCHHHHHHHhcc---CCHHHHHHHHHHHHHHhCCCCHH
Q 014945 362 -----QAIIEAGIIGPLVNLLLN---AEFEIKKEAAWAISNATSGGSNE 402 (415)
Q Consensus 362 -----~~l~~~~~i~~L~~~l~~---~~~~v~~~a~~aL~nl~~~~~~~ 402 (415)
..+.+. ++..|+..-+. .+...|..|-.||..+...++.+
T Consensus 488 qt~~~t~~y~~-ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~ 535 (859)
T KOG1241|consen 488 QTDPATPFYEA-IIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDD 535 (859)
T ss_pred CCCccchhHHH-HHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHH
Confidence 112221 44455555443 45689999999999999887654
No 48
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=2.1e-09 Score=94.23 Aligned_cols=187 Identities=23% Similarity=0.238 Sum_probs=155.3
Q ss_pred cCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChH
Q 014945 81 WSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVP 160 (415)
Q Consensus 81 ~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~ 160 (415)
.+.+++.+..|+.-|..++- +-++...++..|++..++.++++++ ..+|..|+|+++.++..+|.....+++.|+++
T Consensus 93 ~s~~le~ke~ald~Le~lve--~iDnAndl~~~ggl~~ll~~l~~~~-~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~ 169 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELVE--DIDNANDLISLGGLVPLLGYLENSD-AELRELAARVIGTAVQNNPKSQEQVIELGALS 169 (342)
T ss_pred ccCCHHHHHHHHHHHHHHHH--hhhhHHhHhhccCHHHHHHHhcCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHcccHH
Confidence 35678888999999998864 3577788999999999999999998 99999999999999999999999999999999
Q ss_pred HHHHhhCCC-CHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccc-hhHhHHHHHHHHHHHhhhCCCCCchhh
Q 014945 161 IFVRLLSSP-TDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEH-AKLSMLRNATWTLSNFCRGKPQPLFEQ 238 (415)
Q Consensus 161 ~L~~ll~~~-~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~ 238 (415)
.|+..+.++ +..++..|+.+++.+....+...+.+...++...|...+... .+..+++.++..+..+...........
T Consensus 170 ~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~ 249 (342)
T KOG2160|consen 170 KLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIA 249 (342)
T ss_pred HHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 999999874 456789999999999999988899999999999999999543 688899999999999998874433333
Q ss_pred h-hchHHHHHHhhcCCChhHHHHHHHHHHHhcc
Q 014945 239 T-RPALPALERLIHSNDDEVLTDACWALSYLSD 270 (415)
Q Consensus 239 ~-~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~ 270 (415)
. .++-..+..+..+.+.++.+.++.++..+..
T Consensus 250 ~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 250 SSLGFQRVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred HHhhhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 3 3344445566666677888888777766553
No 49
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=5.2e-09 Score=91.79 Aligned_cols=183 Identities=19% Similarity=0.221 Sum_probs=154.1
Q ss_pred hHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHh
Q 014945 129 PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQF 208 (415)
Q Consensus 129 ~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l 208 (415)
.+-+..|+.-|..++.. -++...+++.|++..++.++.+.+..+|+.|+|+|+..+.++|..+..+++.|++..|+..+
T Consensus 97 le~ke~ald~Le~lve~-iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~l 175 (342)
T KOG2160|consen 97 LEDKEDALDNLEELVED-IDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKIL 175 (342)
T ss_pred HHHHHHHHHHHHHHHHh-hhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHH
Confidence 77888899999888885 77888899999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhHhHHHHHHHHHHHhhhCC-CCCchhhhhchHHHHHHhhcC--CChhHHHHHHHHHHHhccCChHHHHHHHHcCcH
Q 014945 209 NEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHS--NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVC 285 (415)
Q Consensus 209 ~~~~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~l~~l~~lL~~--~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i 285 (415)
..+.+..++..|+.+++.+.+.. +........++...|...+++ .+...+..++..+.++..........+...++.
T Consensus 176 s~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f~ 255 (342)
T KOG2160|consen 176 SSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGFQ 255 (342)
T ss_pred ccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhhh
Confidence 87778889999999999999998 444444445668899999988 567788999999999987766555555556777
Q ss_pred HHHHHhcCCCChhhHHHHHHHHHHhhc
Q 014945 286 PRLVELLRHPSPSVLIPALRTVGNIVT 312 (415)
Q Consensus 286 ~~L~~lL~~~~~~v~~~a~~~l~nl~~ 312 (415)
..+..+....+..+...++.++-....
T Consensus 256 ~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 256 RVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred HHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 777777777778888888777666554
No 50
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.16 E-value=2.7e-09 Score=99.64 Aligned_cols=282 Identities=13% Similarity=0.126 Sum_probs=183.7
Q ss_pred CCCHHHHHHHHHHHH---HHhccCCCCch----hHHHhcCchH--HHHHhhcCCCChHHHHHHHHHHHHHhCCCchh---
Q 014945 82 SDDRNIQLDATTQFR---KLLSIERSPPI----NEVIQSGVVP--RFIEFLSRDDFPQLQFEAAWALTNIASGTSEN--- 149 (415)
Q Consensus 82 ~~~~~~~~~a~~~l~---~l~~~~~~~~~----~~~~~~g~i~--~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~--- 149 (415)
......+..|+..++ +++..+ +... ....+.|+.+ ..-+++++++ ...+..++.++..+...+...
T Consensus 192 ~~s~~~RlaaL~~~sr~~~iL~Nn-~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~-~s~~l~sl~cl~~~~~~s~~~d~l 269 (678)
T KOG1293|consen 192 YLSSKLRLAALLCLSRGDRILRNN-PLGSMFLLGLLKDKGVNIRCVVTRLLKDPD-FSERLRSLECLVPYLRKSFNYDPL 269 (678)
T ss_pred hhhHHHHHHHHHHhhccceeeecC-chhHHHHHHHHhccccchhhhhhhhhhCCC-ccHHHHHHHHHHHHHhcccccccc
Confidence 345677888888888 666543 2221 2244667776 5667888887 788899999999888755111
Q ss_pred --hHHHHhCC----------------Ch-----HH-----HHHhhCC-CCH-------HHHHHHHHHHHHhcCCCchhHH
Q 014945 150 --TRVVIDHG----------------AV-----PI-----FVRLLSS-PTD-------DVREQAVWALGNVAGDSPKCRD 193 (415)
Q Consensus 150 --~~~~~~~g----------------~i-----~~-----L~~ll~~-~~~-------~v~~~a~~~L~nl~~~~~~~~~ 193 (415)
...+.+.| ++ .. +..+.+. ..+ +....-+.+-+.++...+.++.
T Consensus 270 ~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~ 349 (678)
T KOG1293|consen 270 PWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELLFICASLAASDEKYRL 349 (678)
T ss_pred ccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHhhcchhhhH
Confidence 01111111 00 00 0001100 011 1112223333444444444444
Q ss_pred HHHhcCChHHH---------------------HHHhccchhHhHHHHHHHHHHHhhhCCCCCc-hhhhhchHHHHHHhhc
Q 014945 194 LVLSNGALMPL---------------------LAQFNEHAKLSMLRNATWTLSNFCRGKPQPL-FEQTRPALPALERLIH 251 (415)
Q Consensus 194 ~~~~~g~i~~L---------------------~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~-~~~~~~~l~~l~~lL~ 251 (415)
.++....++.- ...+....+.+....++.++.++++....-. ......+...+++++.
T Consensus 350 i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~ 429 (678)
T KOG1293|consen 350 ILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLM 429 (678)
T ss_pred HHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhh
Confidence 44332221110 1111133466778888888888876541111 1222456778889999
Q ss_pred CCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHH-H
Q 014945 252 SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPC-L 330 (415)
Q Consensus 252 ~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~-L 330 (415)
.++..|...++.+|+|++-...+....++..|+++.+.+++.+.+..++..++|+|.++..+.++..+......+-.. +
T Consensus 430 dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i 509 (678)
T KOG1293|consen 430 DPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLI 509 (678)
T ss_pred CcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHH
Confidence 899999999999999999776666788999999999999999999999999999999999999877776665555444 4
Q ss_pred HHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHH
Q 014945 331 LDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE 366 (415)
Q Consensus 331 ~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~ 366 (415)
..+.+++ ++.|++.+...+.|+..++.+.++.+++
T Consensus 510 ~~l~nd~-d~~Vqeq~fqllRNl~c~~~~svdfll~ 544 (678)
T KOG1293|consen 510 LDLINDP-DWAVQEQCFQLLRNLTCNSRKSVDFLLE 544 (678)
T ss_pred HHHHhCC-CHHHHHHHHHHHHHhhcCcHHHHHHHHH
Confidence 5566666 9999999999999999998888877765
No 51
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.14 E-value=1.9e-07 Score=89.26 Aligned_cols=325 Identities=18% Similarity=0.207 Sum_probs=238.7
Q ss_pred ccHHHHHHhhcC-CCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCC-CChHHHHHHHHHHHHHhCCCc-
Q 014945 71 ESLPAMVAGVWS-DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRD-DFPQLQFEAAWALTNIASGTS- 147 (415)
Q Consensus 71 ~~i~~l~~~l~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~~i~~~a~~~L~~l~~~~~- 147 (415)
+.|+.|+....+ .=++.+..|+..|..+... .+..+-.-+++.|++.|+.+ .++++...++..+.++.....
T Consensus 22 ETI~kLcDRvessTL~eDRR~A~rgLKa~srk-----YR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~ 96 (970)
T KOG0946|consen 22 ETIEKLCDRVESSTLLEDRRDAVRGLKAFSRK-----YREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDS 96 (970)
T ss_pred hHHHHHHHHHhhccchhhHHHHHHHHHHHHHH-----HHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcc
Confidence 578899988875 4478899999999888532 23333344589999988753 348999999999999887542
Q ss_pred -----hh----------hHHHHh-CCChHHHHHhhCCCCHHHHHHHHHHHHHhcC-CCchhHHHHHhc-CChHHHHHHhc
Q 014945 148 -----EN----------TRVVID-HGAVPIFVRLLSSPTDDVREQAVWALGNVAG-DSPKCRDLVLSN-GALMPLLAQFN 209 (415)
Q Consensus 148 -----~~----------~~~~~~-~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~-~~~~~~~~~~~~-g~i~~L~~~l~ 209 (415)
+. .+.++. .+.|..++..+...|-.||..++..|.++.. .+++.++.++.. -++..|+.+|
T Consensus 97 ~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL- 175 (970)
T KOG0946|consen 97 PEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLL- 175 (970)
T ss_pred hhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHH-
Confidence 11 122333 5788899999999999999999999999875 455677776654 4799999999
Q ss_pred cchhHhHHHHHHHHHHHhhhCCCCCch-hhhhchHHHHHHhhcCC---C-hhHHHHHHHHHHHhccCChHHHHHHHHcCc
Q 014945 210 EHAKLSMLRNATWTLSNFCRGKPQPLF-EQTRPALPALERLIHSN---D-DEVLTDACWALSYLSDGTNDKIQAVIEAGV 284 (415)
Q Consensus 210 ~~~~~~~~~~a~~~l~~l~~~~~~~~~-~~~~~~l~~l~~lL~~~---d-~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~ 284 (415)
.+....++..++..|+.+..+.+..+. .....++..|..++... | .-|..+++..+.||..++..+.+.+.+.+.
T Consensus 176 ~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~ 255 (970)
T KOG0946|consen 176 RDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSY 255 (970)
T ss_pred hhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhcccc
Confidence 777888999999999999998755544 44578899999999653 3 358889999999999888888788888899
Q ss_pred HHHHHHhcCC---CC-----hh-----hHHHHHHHHHHhhcCC-h----HHH-HHHHHCCChHHHHHHhcCC-CccchHH
Q 014945 285 CPRLVELLRH---PS-----PS-----VLIPALRTVGNIVTGD-D----MQT-QCIINHQALPCLLDLLTQN-YKKSIKK 344 (415)
Q Consensus 285 i~~L~~lL~~---~~-----~~-----v~~~a~~~l~nl~~~~-~----~~~-~~~~~~~~l~~L~~ll~~~-~~~~v~~ 344 (415)
+++|..+|.. .+ |. -...++.++..++.-. . .+. ..+...+++..|..++.++ -..+|+.
T Consensus 256 i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIlt 335 (970)
T KOG0946|consen 256 IPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILT 335 (970)
T ss_pred HHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHH
Confidence 9999988852 11 21 2234666666666421 1 222 4566779999999988776 3457999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHcCC----------HHHHHHHhcc-CCHHHHHHHHHHHHHHhCCCCH
Q 014945 345 EACWTISNITAGNVNQIQAIIEAGI----------IGPLVNLLLN-AEFEIKKEAAWAISNATSGGSN 401 (415)
Q Consensus 345 ~a~~~l~nl~~~~~~~~~~l~~~~~----------i~~L~~~l~~-~~~~v~~~a~~aL~nl~~~~~~ 401 (415)
++..+++++..|+..+...+.+..+ +-.++.+..+ ..+..|..+.+++..+......
T Consensus 336 esiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~~ 403 (970)
T KOG0946|consen 336 ESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDNDD 403 (970)
T ss_pred HHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcchh
Confidence 9999999999998888777765221 1122223222 5678999999999988876543
No 52
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.12 E-value=7.2e-08 Score=91.97 Aligned_cols=284 Identities=16% Similarity=0.213 Sum_probs=215.1
Q ss_pred chHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhcCCCc---
Q 014945 115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS--PTDDVREQAVWALGNVAGDSP--- 189 (415)
Q Consensus 115 ~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~--~~~~v~~~a~~~L~nl~~~~~--- 189 (415)
.|+.|+.-+.+..-.+-|+.|+..|-.++. +++..+...| +++|++.|.. .|+++...++.++.++.....
T Consensus 23 TI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vga~G-mk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~ 98 (970)
T KOG0946|consen 23 TIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVGAQG-MKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPE 98 (970)
T ss_pred HHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHHHcc-cHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchh
Confidence 478888877765547789999999998885 5777777655 8889999876 588999999999999985442
Q ss_pred -----h--------hHHH-HHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhh---hhchHHHHHHhhcC
Q 014945 190 -----K--------CRDL-VLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQ---TRPALPALERLIHS 252 (415)
Q Consensus 190 -----~--------~~~~-~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~---~~~~l~~l~~lL~~ 252 (415)
. +.+. +...+.+..++..+ ...|-.++.+++..++++....|...... ...++..++.+|.+
T Consensus 99 v~dds~qsdd~g~~iae~fik~qd~I~lll~~~-e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~D 177 (970)
T KOG0946|consen 99 VMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSL-EEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRD 177 (970)
T ss_pred hcccchhhhHHHHHHHHHHHcCchhHHHHHHHH-HhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhh
Confidence 1 1122 33456677788888 77788999999999999998875433322 25678899999999
Q ss_pred CChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCC----ChhhHHHHHHHHHHhhcCChHHHHHHHHCCChH
Q 014945 253 NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP----SPSVLIPALRTVGNIVTGDDMQTQCIINHQALP 328 (415)
Q Consensus 253 ~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~----~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~ 328 (415)
.-+.||.+++..|..++.+++.....+.=.+++.+|.+++... ..-|...|+..|.|+...+....+.+.+.+.+|
T Consensus 178 srE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~ 257 (970)
T KOG0946|consen 178 SREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIP 257 (970)
T ss_pred hhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHH
Confidence 9999999999999999988876545455568999999999643 236788899999999999888888888889999
Q ss_pred HHHHHhcCCC--c-----cch-----HHHHHHHHHHHhc-CCH----HHH-HHHHHcCCHHHHHHHhccC--CHHHHHHH
Q 014945 329 CLLDLLTQNY--K-----KSI-----KKEACWTISNITA-GNV----NQI-QAIIEAGIIGPLVNLLLNA--EFEIKKEA 388 (415)
Q Consensus 329 ~L~~ll~~~~--~-----~~v-----~~~a~~~l~nl~~-~~~----~~~-~~l~~~~~i~~L~~~l~~~--~~~v~~~a 388 (415)
.|.++|.... + +.- ...+..++..+.. +++ .+. +.+...+++..|+.++.++ ..+|+.++
T Consensus 258 rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltes 337 (970)
T KOG0946|consen 258 RLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTES 337 (970)
T ss_pred HHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHH
Confidence 9998885431 1 111 1345555666665 332 222 3555788999999998876 46899999
Q ss_pred HHHHHHHhCCCCHHH
Q 014945 389 AWAISNATSGGSNEQ 403 (415)
Q Consensus 389 ~~aL~nl~~~~~~~~ 403 (415)
..++.+...++...|
T Consensus 338 iitvAevVRgn~~nQ 352 (970)
T KOG0946|consen 338 IITVAEVVRGNARNQ 352 (970)
T ss_pred HHHHHHHHHhchHHH
Confidence 999999998754433
No 53
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.10 E-value=9.8e-09 Score=94.41 Aligned_cols=318 Identities=14% Similarity=0.083 Sum_probs=200.8
Q ss_pred ccHHHHHHhhc----CCC-HHHHHHHHHHHHHHhccCCCCchhHHHhcC--chHHHHHhhcCCCChHHHHHHHHHHHH-H
Q 014945 71 ESLPAMVAGVW----SDD-RNIQLDATTQFRKLLSIERSPPINEVIQSG--VVPRFIEFLSRDDFPQLQFEAAWALTN-I 142 (415)
Q Consensus 71 ~~i~~l~~~l~----~~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g--~i~~L~~ll~~~~~~~i~~~a~~~L~~-l 142 (415)
+.+|.++..+- .+. ...+..++.++.+..... .|...+..++ ++......++...+..+|..|+.+|.+ +
T Consensus 129 ~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~--~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl 206 (858)
T COG5215 129 SLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESE--APEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSL 206 (858)
T ss_pred ccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhcc--CHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHH
Confidence 45666666554 333 456777888888876543 3322222232 222333445554447899999999977 2
Q ss_pred hCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHH
Q 014945 143 ASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATW 222 (415)
Q Consensus 143 ~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~ 222 (415)
......+...--.+=++...+..-+.++.+++..|..||..|..-.-.+-....+........+.+ ++++.++...+..
T Consensus 207 ~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~m-ks~nd~va~qavE 285 (858)
T COG5215 207 MFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFM-KSQNDEVAIQAVE 285 (858)
T ss_pred HHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcchHHHHHHHH
Confidence 221000000000111344555566678999999999999998754333333333432223333444 7888899999999
Q ss_pred HHHHhhhCCCCCch-----------------hhhhchHHHHHHhhcCC-------ChhHHHHHHHHHHHhccCChHHHHH
Q 014945 223 TLSNFCRGKPQPLF-----------------EQTRPALPALERLIHSN-------DDEVLTDACWALSYLSDGTNDKIQA 278 (415)
Q Consensus 223 ~l~~l~~~~~~~~~-----------------~~~~~~l~~l~~lL~~~-------d~~v~~~a~~~l~~l~~~~~~~~~~ 278 (415)
.++.+|........ ..+..++|.|+.+|... |..+-..|..+|.-.+....+.
T Consensus 286 fWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~--- 362 (858)
T COG5215 286 FWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDK--- 362 (858)
T ss_pred HHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhH---
Confidence 99999876411110 11356889999999542 3345566666666665443322
Q ss_pred HHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCH
Q 014945 279 VIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV 358 (415)
Q Consensus 279 ~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~ 358 (415)
+++. ++..+-+-+.++++.-++.+.-++|.+..++......-+-+.++|.+...+.++ .-.++..++|+++.|+.+-+
T Consensus 363 i~~p-Vl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~-~l~vk~ttAwc~g~iad~va 440 (858)
T COG5215 363 IMRP-VLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDS-CLWVKSTTAWCFGAIADHVA 440 (858)
T ss_pred hHHH-HHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccc-eeehhhHHHHHHHHHHHHHH
Confidence 2222 455556667889999999999999999999887666666678899999999888 88999999999999986533
Q ss_pred HHHHHHHHcCCHHHHHHHhc---cCCHHHHHHHHHHHHHHhCCC
Q 014945 359 NQIQAIIEAGIIGPLVNLLL---NAEFEIKKEAAWAISNATSGG 399 (415)
Q Consensus 359 ~~~~~l~~~~~i~~L~~~l~---~~~~~v~~~a~~aL~nl~~~~ 399 (415)
+.+. ..|-++..+.... .+.|.+..+++|+..|++.+-
T Consensus 441 ~~i~---p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~ 481 (858)
T COG5215 441 MIIS---PCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHI 481 (858)
T ss_pred HhcC---ccccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhh
Confidence 3222 2233333333221 256889999999999998654
No 54
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.09 E-value=3e-08 Score=91.34 Aligned_cols=322 Identities=13% Similarity=0.124 Sum_probs=208.3
Q ss_pred ccHHHHHHhhcCC-------CHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHh
Q 014945 71 ESLPAMVAGVWSD-------DRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIA 143 (415)
Q Consensus 71 ~~i~~l~~~l~~~-------~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~ 143 (415)
+.+|.++++|..+ |...-..|..+|.-+.... .+.+.+. ++...-+-+++++ ..-+..|+.+++.+.
T Consensus 321 dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~----gd~i~~p-Vl~FvEqni~~~~-w~nreaavmAfGSvm 394 (858)
T COG5215 321 DVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLK----GDKIMRP-VLGFVEQNIRSES-WANREAAVMAFGSVM 394 (858)
T ss_pred HHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHh----hhHhHHH-HHHHHHHhccCch-hhhHHHHHHHhhhhh
Confidence 3579999999752 2344455555554443211 1222221 3444445566777 788999999999999
Q ss_pred CCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhcc--chhHhHHHHHH
Q 014945 144 SGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE--HAKLSMLRNAT 221 (415)
Q Consensus 144 ~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~--~~~~~~~~~a~ 221 (415)
.+..+....-+-..++|.+...+.++..-+.+.+.||++.|+..-+ ..+-..|.++..+..... .+.+....+++
T Consensus 395 ~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va---~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncs 471 (858)
T COG5215 395 HGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVA---MIISPCGHLVLEVSASLIGLMDCPFRSINCS 471 (858)
T ss_pred cCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHH---HhcCccccccHHHHHHHhhhhccchHHhhhH
Confidence 9866555444445789999999988888899999999999986543 445556666666655422 34677888999
Q ss_pred HHHHHhhhCCCCCc---hhhhhchHHHHHHhh------cCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHH-----
Q 014945 222 WTLSNFCRGKPQPL---FEQTRPALPALERLI------HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPR----- 287 (415)
Q Consensus 222 ~~l~~l~~~~~~~~---~~~~~~~l~~l~~lL------~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~----- 287 (415)
|...|+..+-+... ...+..+.+.++.-| ..++...+..+..+|+.+....++....+. .|+...
T Consensus 472 w~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~-a~~~~~~~~kl 550 (858)
T COG5215 472 WRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDIL-AGFYDYTSKKL 550 (858)
T ss_pred HHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHH-HHHHHHHHHHH
Confidence 99999998763322 223334444444322 234567888888888887755543322221 122222
Q ss_pred ------HHHhcCCCC----hhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCC
Q 014945 288 ------LVELLRHPS----PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN 357 (415)
Q Consensus 288 ------L~~lL~~~~----~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~ 357 (415)
+-+.|..++ .+++..-+..|..+....+..++.+-+ .++..++++|++.....+......++++++..-
T Consensus 551 ~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v~D-~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl 629 (858)
T COG5215 551 DECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDVED-QLMELFIRILESTKPTTAFGDVYTAISALSTSL 629 (858)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHH-HHHHHHHHHHhccCCchhhhHHHHHHHHHHHHH
Confidence 222222222 357777888888887655433332222 466778888988834456778889999999865
Q ss_pred HHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCHHHH
Q 014945 358 VNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQI 404 (415)
Q Consensus 358 ~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~ 404 (415)
.+........ ++|.|.+-|...|..+...|...++.++..-..++.
T Consensus 630 ~e~Fe~y~~~-fiPyl~~aln~~d~~v~~~avglvgdlantl~~df~ 675 (858)
T COG5215 630 EERFEQYASK-FIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTDFN 675 (858)
T ss_pred HHHHHHHHhh-hhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhHH
Confidence 5655555544 999999999888999999999999999876554443
No 55
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.08 E-value=1.4e-08 Score=99.42 Aligned_cols=276 Identities=17% Similarity=0.222 Sum_probs=210.6
Q ss_pred HHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHH
Q 014945 85 RNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVR 164 (415)
Q Consensus 85 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ 164 (415)
...|..|.+.+....+..+.||-+ +|..++.|-+ .--|..|+..|+....-.+-....-..-|++|.+++
T Consensus 450 FteQLTAFevWLd~gse~r~PPeQ-------LPiVLQVLLS---QvHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLK 519 (1387)
T KOG1517|consen 450 FTEQLTAFEVWLDYGSESRTPPEQ-------LPIVLQVLLS---QVHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLK 519 (1387)
T ss_pred HHHHHHHHHHHHHhccccCCChHh-------cchHHHHHHH---HHHHHHHHHHHHHHhccchhhhhhhhccchHHHHHH
Confidence 355777777777776666666654 4666666654 345788999999988877877788888899999999
Q ss_pred hhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccch--hHhHHHHHHHHHHHhhhCCCCCchhh-hhc
Q 014945 165 LLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA--KLSMLRNATWTLSNFCRGKPQPLFEQ-TRP 241 (415)
Q Consensus 165 ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~--~~~~~~~a~~~l~~l~~~~~~~~~~~-~~~ 241 (415)
+|+++-.+++...+.+.+.|..-++.|+..+++.++...+++.|..++ +++-+..++++|+.++.+.+..+... ..+
T Consensus 520 LLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~ 599 (1387)
T KOG1517|consen 520 LLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGN 599 (1387)
T ss_pred HhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhcccc
Confidence 999999999999999999988777889999999999999999885423 45678889999999998875444433 356
Q ss_pred hHHHHHHhhcCC-ChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcC----ChH
Q 014945 242 ALPALERLIHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG----DDM 316 (415)
Q Consensus 242 ~l~~l~~lL~~~-d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~----~~~ 316 (415)
++......|.++ .+-++.-+|-+|+.|=.+.++..=.-.+.++.+.|..+|+++-++||..|+.+||.+..+ .++
T Consensus 600 li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde 679 (1387)
T KOG1517|consen 600 LIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDE 679 (1387)
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccch
Confidence 777888888875 577889999999999766655433345568899999999999999999999999999985 333
Q ss_pred HHHHH------------HHCCCh---HHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHH
Q 014945 317 QTQCI------------INHQAL---PCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIG 371 (415)
Q Consensus 317 ~~~~~------------~~~~~l---~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~ 371 (415)
+...+ ++..+. -.++.+++++ .+-++.+.+-+|+.+..+...+...+.-+...+
T Consensus 680 ~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdg-splvr~ev~v~ls~~~~g~~~~~~~va~n~~~~ 748 (1387)
T KOG1517|consen 680 QTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDG-SPLVRTEVVVALSHFVVGYVSHLKVVAGNYLLP 748 (1387)
T ss_pred hhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhcc-chHHHHHHHHHHHHHHHhhHHHhHHHhhhhccc
Confidence 33322 222222 2667778888 999999999999999988777665554433333
No 56
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=99.06 E-value=5.2e-09 Score=94.82 Aligned_cols=228 Identities=18% Similarity=0.259 Sum_probs=159.5
Q ss_pred hHHHHHhhC--CCCHHHHHHHHHHHHHhcCCCchhHHHHHh------cCChHHHHHHhccchhHhHHHHHHHHHHHhhhC
Q 014945 159 VPIFVRLLS--SPTDDVREQAVWALGNVAGDSPKCRDLVLS------NGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 230 (415)
Q Consensus 159 i~~L~~ll~--~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~------~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~ 230 (415)
...++.+|+ ++++++...++..+..+..+.+...+.+.. .....++++++ ..+|..+...++..++.+...
T Consensus 57 ~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll-~~~D~~i~~~a~~iLt~Ll~~ 135 (312)
T PF03224_consen 57 ASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLL-DRNDSFIQLKAAFILTSLLSQ 135 (312)
T ss_dssp -----HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH--S-SSHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHh-cCCCHHHHHHHHHHHHHHHHc
Confidence 334444443 467889999999999999888876666655 22578888877 667999999999999999988
Q ss_pred CCCCchhhhhchHHHHHHhhcC----CChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhc-----CC--CChhh
Q 014945 231 KPQPLFEQTRPALPALERLIHS----NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-----RH--PSPSV 299 (415)
Q Consensus 231 ~~~~~~~~~~~~l~~l~~lL~~----~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL-----~~--~~~~v 299 (415)
.+........+.++.++..+.+ ++.+++..++.++.++..... ....+.+.|+++.+.++| .+ .+..+
T Consensus 136 ~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~-~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql 214 (312)
T PF03224_consen 136 GPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKE-YRQVFWKSNGVSPLFDILRKQATNSNSSGIQL 214 (312)
T ss_dssp TTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHH-HHHHHHTHHHHHHHHHHHH---------HHHH
T ss_pred CCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcch-hHHHHHhcCcHHHHHHHHHhhcccCCCCchhH
Confidence 7555554335566666666543 566778899999999986555 446688899999999999 22 23567
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCH-HHHHHHHHcCCHHHHHHHhc
Q 014945 300 LIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV-NQIQAIIEAGIIGPLVNLLL 378 (415)
Q Consensus 300 ~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~-~~~~~l~~~~~i~~L~~~l~ 378 (415)
+-.++.++.-++.. ++....+.+.++++.+..+++.....+|-+-+..++.|++...+ .....++..|+++.+-.+..
T Consensus 215 ~Y~~ll~lWlLSF~-~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~ 293 (312)
T PF03224_consen 215 QYQALLCLWLLSFE-PEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSE 293 (312)
T ss_dssp HHHHHHHHHHHTTS-HHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHS
T ss_pred HHHHHHHHHHHhcC-HHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhc
Confidence 78899999888875 55777788889999999999887688999999999999998544 37778888877777766665
Q ss_pred c--CCHHHHHHHH
Q 014945 379 N--AEFEIKKEAA 389 (415)
Q Consensus 379 ~--~~~~v~~~a~ 389 (415)
. +|+++....-
T Consensus 294 rk~~Dedl~edl~ 306 (312)
T PF03224_consen 294 RKWSDEDLTEDLE 306 (312)
T ss_dssp S--SSHHHHHHHH
T ss_pred CCCCCHHHHHHHH
Confidence 4 7788766443
No 57
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.99 E-value=1.2e-08 Score=92.56 Aligned_cols=214 Identities=18% Similarity=0.265 Sum_probs=150.3
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHh------cCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCch
Q 014945 75 AMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQ------SGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSE 148 (415)
Q Consensus 75 ~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~------~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~ 148 (415)
.+++.+ +.+++.....+..+..+++.. ....+.+.. ......|++++.++| ..++..|+.+|+.++...+.
T Consensus 62 ~lL~~~-~~~~d~v~yvL~li~dll~~~-~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D-~~i~~~a~~iLt~Ll~~~~~ 138 (312)
T PF03224_consen 62 NLLNKL-SSNDDTVQYVLTLIDDLLSDD-PSRVELFLELAKQDDSDPYSPFLKLLDRND-SFIQLKAAFILTSLLSQGPK 138 (312)
T ss_dssp HHHHHH----HHHHHHHHHHHHHHHH-S-SSSHHHHHHHHH-TTH--HHHHHHH-S-SS-HHHHHHHHHHHHHHHTSTTT
T ss_pred HHHHHc-cCcHHHHHHHHHHHHHHHhcC-HHHHHHHHHhcccccchhHHHHHHHhcCCC-HHHHHHHHHHHHHHHHcCCc
Confidence 444444 568888999999999998765 344444432 236788889888887 99999999999999886555
Q ss_pred hhHHHHhCCChHHHHHhhCC----CCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHh------ccchhHhHHH
Q 014945 149 NTRVVIDHGAVPIFVRLLSS----PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQF------NEHAKLSMLR 218 (415)
Q Consensus 149 ~~~~~~~~g~i~~L~~ll~~----~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l------~~~~~~~~~~ 218 (415)
...... .+.++.+++++.+ ++.+++..|+.+|.++....+ +|..+.+.|+++.+..++ ....+.+++.
T Consensus 139 ~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~-~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y 216 (312)
T PF03224_consen 139 RSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKE-YRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQY 216 (312)
T ss_dssp --HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHH-HHHHHHTHHHHHHHHHHHH---------HHHHHH
T ss_pred cccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcch-hHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHH
Confidence 444322 3556777777654 456678999999999985554 899999999999999999 4566889999
Q ss_pred HHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCC-ChhHHHHHHHHHHHhccCChH-HHHHHHHcCcHHHHHHhcC
Q 014945 219 NATWTLSNFCRGKPQPLFEQTRPALPALERLIHSN-DDEVLTDACWALSYLSDGTND-KIQAVIEAGVCPRLVELLR 293 (415)
Q Consensus 219 ~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~-d~~v~~~a~~~l~~l~~~~~~-~~~~~~~~~~i~~L~~lL~ 293 (415)
+++.+++.|+..+.........+++|.++.+++.. .++|..-++.++.|+...... ....++..|+++.+-.+..
T Consensus 217 ~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~ 293 (312)
T PF03224_consen 217 QALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSE 293 (312)
T ss_dssp HHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHS
T ss_pred HHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhc
Confidence 99999999998754444444466899999999764 688999999999999977653 5677888887666655553
No 58
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.92 E-value=1.3e-06 Score=82.97 Aligned_cols=218 Identities=16% Similarity=0.171 Sum_probs=162.6
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHH
Q 014945 74 PAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVV 153 (415)
Q Consensus 74 ~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~ 153 (415)
+.++.+|++.-|-++..|+..+.++.-.. ++..+ ..+|.|.+-|.++| +.++..|+.++|.+|..+|.+.-
T Consensus 147 ~Dv~tLL~sskpYvRKkAIl~lykvFLkY-PeAlr-----~~FprL~EkLeDpD-p~V~SAAV~VICELArKnPknyL-- 217 (877)
T KOG1059|consen 147 DDVFTLLNSSKPYVRKKAILLLYKVFLKY-PEALR-----PCFPRLVEKLEDPD-PSVVSAAVSVICELARKNPQNYL-- 217 (877)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHhh-hHhHh-----hhHHHHHHhccCCC-chHHHHHHHHHHHHHhhCCcccc--
Confidence 67788889888989999998888876443 22222 25899999999999 99999999999999998776543
Q ss_pred HhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCC-
Q 014945 154 IDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK- 231 (415)
Q Consensus 154 ~~~g~i~~L~~ll~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~- 231 (415)
..-|.+..+|.. .|.=+....+..+++|+--.|..... .+++|..++.+..-..+...+..++..-+...
T Consensus 218 ---~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKK-----Lieplt~li~sT~AmSLlYECvNTVVa~s~s~g 289 (877)
T KOG1059|consen 218 ---QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKK-----LIEPITELMESTVAMSLLYECVNTVVAVSMSSG 289 (877)
T ss_pred ---cccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhh-----hhhHHHHHHHhhHHHHHHHHHHHHheeehhccC
Confidence 245778887765 34445667888999998777755444 67899999955445556666665554332221
Q ss_pred CCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhh
Q 014945 232 PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV 311 (415)
Q Consensus 232 ~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~ 311 (415)
.......+.-++..|-.++.++|+.+..-++-+++.+....+..++.. -+.++.+|.+.++.++..|+..+--++
T Consensus 290 ~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~-----kdlIlrcL~DkD~SIRlrALdLl~gmV 364 (877)
T KOG1059|consen 290 MSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAH-----KDLILRCLDDKDESIRLRALDLLYGMV 364 (877)
T ss_pred CCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHh-----HHHHHHHhccCCchhHHHHHHHHHHHh
Confidence 123344556778888889999999999999999999997776554432 377899999999999999999888777
Q ss_pred cC
Q 014945 312 TG 313 (415)
Q Consensus 312 ~~ 313 (415)
..
T Consensus 365 sk 366 (877)
T KOG1059|consen 365 SK 366 (877)
T ss_pred hh
Confidence 53
No 59
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.91 E-value=3.6e-07 Score=88.98 Aligned_cols=310 Identities=15% Similarity=0.144 Sum_probs=194.3
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHH
Q 014945 75 AMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVI 154 (415)
Q Consensus 75 ~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~ 154 (415)
.|++.+.+.|.+.++.|+.-|.+=+... .-..+.--+..++..++++|++.+ .++|..|+.|++-+++.-++.+-.
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkd-si~Ld~dSe~kvv~~lLklL~D~n-gEVQnlAVKClg~lvsKvke~~le-- 84 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKD-SIKLDDDSERKVVKMLLKLLEDKN-GEVQNLAVKCLGPLVSKVKEDQLE-- 84 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhh-hhhccccchhHHHHHHHHHHhccC-cHHHHHHHHHHHHHHhhchHHHHH--
Confidence 7888999999999999999888766543 222333334567899999999998 999999999999999754444322
Q ss_pred hCCChHHHHHhhCCCCHHHHHHHHHHHHHh-cCCCchhHHHHHhcCChHHHHHHh----ccch-hHhHHHHHHHHHHHhh
Q 014945 155 DHGAVPIFVRLLSSPTDDVREQAVWALGNV-AGDSPKCRDLVLSNGALMPLLAQF----NEHA-KLSMLRNATWTLSNFC 228 (415)
Q Consensus 155 ~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl-~~~~~~~~~~~~~~g~i~~L~~~l----~~~~-~~~~~~~a~~~l~~l~ 228 (415)
..++.|+.-+-++.+..+..+.-.|... +.-.| .....+...+.+.++..+ .... ...++..++..+..+.
T Consensus 85 --~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P-~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~l 161 (1233)
T KOG1824|consen 85 --TIVENLCSNMLSGKEQLRDISSIGLKTVIANLPP-SSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVL 161 (1233)
T ss_pred --HHHHHHhhhhccchhhhccHHHHHHHHHHhcCCC-ccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHH
Confidence 1344555544444444444443333322 22222 222223333444444444 2222 2335666666665554
Q ss_pred hCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCC-ChhhHHHHHHHH
Q 014945 229 RGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP-SPSVLIPALRTV 307 (415)
Q Consensus 229 ~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~~l 307 (415)
......-..+-.+.+..++.-+.++...|+..++.+|+.++...+.. +. .++++.|+.-|..+ .......-+.+|
T Consensus 162 sr~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~---ly-~~li~~Ll~~L~~~~q~~~~rt~Iq~l 237 (1233)
T KOG1824|consen 162 SRFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRD---LY-VELIEHLLKGLSNRTQMSATRTYIQCL 237 (1233)
T ss_pred HhhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHH---HH-HHHHHHHHhccCCCCchHHHHHHHHHH
Confidence 44322222244566677777788888999999999999998654432 11 24567777777544 444555566788
Q ss_pred HHhhcCChHHHHHHHHCCChHHHHHHh---cCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccC----
Q 014945 308 GNIVTGDDMQTQCIINHQALPCLLDLL---TQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA---- 380 (415)
Q Consensus 308 ~nl~~~~~~~~~~~~~~~~l~~L~~ll---~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~---- 380 (415)
+.++.........- -...+|.+.++. +.. ++++|+.+..++..+...+|..+-..+.. ++..+++.+.++
T Consensus 238 ~~i~r~ag~r~~~h-~~~ivp~v~~y~~~~e~~-dDELrE~~lQale~fl~rcp~ei~p~~pe-i~~l~l~yisYDPNy~ 314 (1233)
T KOG1824|consen 238 AAICRQAGHRFGSH-LDKIVPLVADYCNKIEED-DDELREYCLQALESFLRRCPKEILPHVPE-IINLCLSYISYDPNYN 314 (1233)
T ss_pred HHHHHHhcchhhcc-cchhhHHHHHHhcccccC-cHHHHHHHHHHHHHHHHhChhhhcccchH-HHHHHHHHhccCCCCC
Confidence 88876443222211 115678888888 556 88999999999999988777766554443 455555544321
Q ss_pred ------------------------------CHHHHHHHHHHHHHHhCC
Q 014945 381 ------------------------------EFEIKKEAAWAISNATSG 398 (415)
Q Consensus 381 ------------------------------~~~v~~~a~~aL~nl~~~ 398 (415)
.++||.+|+.++.-+...
T Consensus 315 yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsS 362 (1233)
T KOG1824|consen 315 YDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISS 362 (1233)
T ss_pred CCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhc
Confidence 246999999999888754
No 60
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.88 E-value=1.5e-07 Score=84.80 Aligned_cols=266 Identities=14% Similarity=0.102 Sum_probs=180.7
Q ss_pred ccHHHHHHhhcCCCHH--HHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCch
Q 014945 71 ESLPAMVAGVWSDDRN--IQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSE 148 (415)
Q Consensus 71 ~~i~~l~~~l~~~~~~--~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~ 148 (415)
+++..|++++.+.+.+ ++.+|...|..++.. ++.+.+...| +..++.+-+....++.+...+.+|.++..++.+
T Consensus 180 ~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~a---eN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSee 255 (832)
T KOG3678|consen 180 GGLDLLLRMFQAPNLETSVRVEAARLLEQILVA---ENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSEE 255 (832)
T ss_pred chHHHHHHHHhCCchhHHHHHHHHHHHHHHHhh---hhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHH
Confidence 6789999999987754 588999999999864 5566676665 555555555544478999999999999999999
Q ss_pred hhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCC-CchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHh
Q 014945 149 NTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGD-SPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNF 227 (415)
Q Consensus 149 ~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~-~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l 227 (415)
....++..|+++.++-.....++.+..+|..+|+|++-. ....+..+++..+-+-|..+. .+.+.-++.+||.+++.+
T Consensus 256 t~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA-~skDel~R~~AClAV~vl 334 (832)
T KOG3678|consen 256 TCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLA-FSKDELLRLHACLAVAVL 334 (832)
T ss_pred HHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhh-cchHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999843 445566777776777777666 666888899999999999
Q ss_pred hhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHH
Q 014945 228 CRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV 307 (415)
Q Consensus 228 ~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l 307 (415)
+..+.........+.+..+-.++.+-|+.--.. --...+.+.. ..-+++|+.+|.+..-+.+..+..-+
T Consensus 335 at~KE~E~~VrkS~TlaLVEPlva~~DP~~FAR---D~hd~aQG~~--------~d~LqRLvPlLdS~R~EAq~i~AF~l 403 (832)
T KOG3678|consen 335 ATNKEVEREVRKSGTLALVEPLVASLDPGRFAR---DAHDYAQGRG--------PDDLQRLVPLLDSNRLEAQCIGAFYL 403 (832)
T ss_pred hhhhhhhHHHhhccchhhhhhhhhccCcchhhh---hhhhhhccCC--------hHHHHHhhhhhhcchhhhhhhHHHHH
Confidence 987644444444555555555555555442111 1111111111 13468899999865444433333222
Q ss_pred HHhh--cCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHH
Q 014945 308 GNIV--TGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNI 353 (415)
Q Consensus 308 ~nl~--~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl 353 (415)
..=+ .......+.+-+-|.+..|..+.+++ +..-.+.|-.+|.-|
T Consensus 404 ~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~-d~vaakfAseALtvi 450 (832)
T KOG3678|consen 404 CAEAAIKSLQGKTKVFSEIGAIQALKEVASSP-DEVAAKFASEALTVI 450 (832)
T ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHh
Confidence 2111 11122344455669999999999877 655444454555443
No 61
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.87 E-value=2.1e-07 Score=88.36 Aligned_cols=317 Identities=14% Similarity=0.158 Sum_probs=201.1
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCC-hHHHHHHHHHHHHHhCCC-chh
Q 014945 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDF-PQLQFEAAWALTNIASGT-SEN 149 (415)
Q Consensus 72 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~-~~i~~~a~~~L~~l~~~~-~~~ 149 (415)
.+..++.-++++.+..+..++....++.+.-....+++-.+.-.+..++-.++.++. ..+-...+..+.+-.... ..+
T Consensus 717 ~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~r~kpy 796 (1172)
T KOG0213|consen 717 IVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGGRVKPY 796 (1172)
T ss_pred HHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhhccccc
Confidence 356677777888888888888887777654333334443344455555555554431 233334444443322210 111
Q ss_pred hHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhH--HHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHh
Q 014945 150 TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR--DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNF 227 (415)
Q Consensus 150 ~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~--~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l 227 (415)
. ..++..++..|+++.+.++++|+..++.|+.--..+. ..+-..|. .|...| ....+++.-.++.++..+
T Consensus 797 l-----pqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEyl-geeypEvLgsILgAikaI 868 (1172)
T KOG0213|consen 797 L-----PQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYL-GEEYPEVLGSILGAIKAI 868 (1172)
T ss_pred h-----HHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhc-CcccHHHHHHHHHHHHHH
Confidence 1 1245677778999999999999999999873222111 11111111 233444 566788888888888777
Q ss_pred hhCC-CCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHH
Q 014945 228 CRGK-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 306 (415)
Q Consensus 228 ~~~~-~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~ 306 (415)
+... -..-..-+.+++|.|...|++....|+++++..++.++...++.+..---..+.=.|+++|.+.+..++..|..+
T Consensus 869 ~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nT 948 (1172)
T KOG0213|consen 869 VNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNT 948 (1172)
T ss_pred HHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7554 122233457899999999999999999999999999998766542211111344567788888888999999999
Q ss_pred HHHhhc--CChHHHHHHHH-----------------------CC---ChHHHHHHhcCCCccchHHHHHHHHHHHhcCCH
Q 014945 307 VGNIVT--GDDMQTQCIIN-----------------------HQ---ALPCLLDLLTQNYKKSIKKEACWTISNITAGNV 358 (415)
Q Consensus 307 l~nl~~--~~~~~~~~~~~-----------------------~~---~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~ 358 (415)
+|-|+. |+.+....+++ +| ++|.|+.=...+ +..|+.....+++.+.....
T Consensus 949 fG~IakaIGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtP-e~nVQnGVLkalsf~Feyig 1027 (1172)
T KOG0213|consen 949 FGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTP-EANVQNGVLKALSFMFEYIG 1027 (1172)
T ss_pred hhHHHHhcCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCc-hhHHHHhHHHHHHHHHHHHH
Confidence 998875 22222222221 12 345555544555 67788888888888776322
Q ss_pred HH-HHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhCCC
Q 014945 359 NQ-IQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG 399 (415)
Q Consensus 359 ~~-~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~~ 399 (415)
+. .+++.. +.|.|-+.|.+.|.--|..|+.++.+++.+.
T Consensus 1028 emskdYiya--v~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~ 1067 (1172)
T KOG0213|consen 1028 EMSKDYIYA--VTPLLEDALMDRDLVHRQTAMNVIKHLALGV 1067 (1172)
T ss_pred HHhhhHHHH--hhHHHHHhhccccHHHHHHHHHHHHHHhcCC
Confidence 22 223222 6788888999999999999999999998764
No 62
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.86 E-value=2.3e-07 Score=83.72 Aligned_cols=275 Identities=17% Similarity=0.196 Sum_probs=190.9
Q ss_pred hhHHHhcCchHHHHHhhcCCCC-hHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHh
Q 014945 107 INEVIQSGVVPRFIEFLSRDDF-PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNV 184 (415)
Q Consensus 107 ~~~~~~~g~i~~L~~ll~~~~~-~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~v~~~a~~~L~nl 184 (415)
.+.+...|++..|++++..++. ..++.+++..|..+.. .++++.+..-| +..++.+.+. ...+.....+..|+++
T Consensus 173 CD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~m 249 (832)
T KOG3678|consen 173 CDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHM 249 (832)
T ss_pred hhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHH
Confidence 3456677899999999998872 3569999999999887 67888888876 5555555443 5678899999999999
Q ss_pred cCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCC-Cchhhh-hchHHHHHHhhcCCChhHHHHHH
Q 014945 185 AGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQ-PLFEQT-RPALPALERLIHSNDDEVLTDAC 262 (415)
Q Consensus 185 ~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~-~~~~~~-~~~l~~l~~lL~~~d~~v~~~a~ 262 (415)
..++.+....+++.|++..++-.+ ...++.+.++++.+|.|++-+... .+...+ ..+-+-|..+-.+.|+-.+..||
T Consensus 250 FKHSeet~~~Lvaa~~lD~vl~~~-rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AC 328 (832)
T KOG3678|consen 250 FKHSEETCQRLVAAGGLDAVLYWC-RRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHAC 328 (832)
T ss_pred hhhhHHHHHHHHhhcccchheeec-ccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHH
Confidence 999988888899999999998888 677899999999999999877522 222222 33444566666677888999999
Q ss_pred HHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccch
Q 014945 263 WALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSI 342 (415)
Q Consensus 263 ~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v 342 (415)
-+++.++...+-. ..+-.+|.+..+-.++.+-++.-... --...+.+.. ...+..|+.+|++. .-+.
T Consensus 329 lAV~vlat~KE~E-~~VrkS~TlaLVEPlva~~DP~~FAR---D~hd~aQG~~--------~d~LqRLvPlLdS~-R~EA 395 (832)
T KOG3678|consen 329 LAVAVLATNKEVE-REVRKSGTLALVEPLVASLDPGRFAR---DAHDYAQGRG--------PDDLQRLVPLLDSN-RLEA 395 (832)
T ss_pred HHHhhhhhhhhhh-HHHhhccchhhhhhhhhccCcchhhh---hhhhhhccCC--------hHHHHHhhhhhhcc-hhhh
Confidence 9999998765432 44666777666666665555421111 1111222211 13467889999877 6666
Q ss_pred HHHHHHHHHHHhc-CC-HHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhCC
Q 014945 343 KKEACWTISNITA-GN-VNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSG 398 (415)
Q Consensus 343 ~~~a~~~l~nl~~-~~-~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~ 398 (415)
+..+++-++.=++ .+ ....+.+-+-|.|..|-++..++|.--.+-|..||.-+-+.
T Consensus 396 q~i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviGEE 453 (832)
T KOG3678|consen 396 QCIGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIGEE 453 (832)
T ss_pred hhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhccc
Confidence 6656555543333 11 12234455778999999998877765556677777666544
No 63
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.84 E-value=7.9e-07 Score=79.49 Aligned_cols=263 Identities=11% Similarity=0.151 Sum_probs=173.5
Q ss_pred HHHhhcC-CCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhh-cCCCChHHHHHHHHHHHHHhCCCchhhHHH
Q 014945 76 MVAGVWS-DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFL-SRDDFPQLQFEAAWALTNIASGTSENTRVV 153 (415)
Q Consensus 76 l~~~l~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll-~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~ 153 (415)
+...+++ .+.+....|+.+|..++.. .+....++..+++..++..+ +..-.-++|++.+.|+.-++.. +...+.+
T Consensus 161 l~~~l~~~~~~~~~~~~~rcLQ~ll~~--~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn-~~~ae~~ 237 (442)
T KOG2759|consen 161 LKEQLQSSTNNDYIQFAARCLQTLLRV--DEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFN-PHAAEKL 237 (442)
T ss_pred HHHHHhccCCCchHHHHHHHHHHHhcC--cchhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcC-HHHHHHH
Confidence 3344454 5667777888888888754 35555677788899999988 4433379999999999999985 6666777
Q ss_pred HhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhcCCCc------hhHHHHHhcCChHHHHHHhcc--chhHhHHHHHHHHH
Q 014945 154 IDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSP------KCRDLVLSNGALMPLLAQFNE--HAKLSMLRNATWTL 224 (415)
Q Consensus 154 ~~~g~i~~L~~ll~~-~~~~v~~~a~~~L~nl~~~~~------~~~~~~~~~g~i~~L~~~l~~--~~~~~~~~~a~~~l 224 (415)
...+.|+.|..++++ ..++|.+.++.++.|+....+ ......+.. .+++-++.|.. -.|+++....-..-
T Consensus 238 ~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~-~v~k~l~~L~~rkysDEDL~~di~~L~ 316 (442)
T KOG2759|consen 238 KRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLC-KVLKTLQSLEERKYSDEDLVDDIEFLT 316 (442)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhc-CchHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 778999999999986 467899999999999997664 111223333 44555555532 23666655544443
Q ss_pred HHhhhCC-CCCchhhhhchH-HHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHc--CcHHHHHHhcCCC-Chhh
Q 014945 225 SNFCRGK-PQPLFEQTRPAL-PALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA--GVCPRLVELLRHP-SPSV 299 (415)
Q Consensus 225 ~~l~~~~-~~~~~~~~~~~l-~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~--~~i~~L~~lL~~~-~~~v 299 (415)
..|-... .-..+ .... +.....|+.+... ...-.|- ++...+-+. .++..|+.+|... +|.+
T Consensus 317 e~L~~svq~LsSF---DeY~sEl~sG~L~WSP~H-k~e~FW~---------eNa~rlnennyellkiL~~lLe~s~Dp~i 383 (442)
T KOG2759|consen 317 EKLKNSVQDLSSF---DEYKSELRSGRLEWSPVH-KSEKFWR---------ENADRLNENNYELLKILIKLLETSNDPII 383 (442)
T ss_pred HHHHHHHHhhccH---HHHHHHHHhCCcCCCccc-cccchHH---------HhHHHHhhccHHHHHHHHHHHhcCCCCce
Confidence 3333221 00000 0000 0111112111110 0111110 111222222 3678899999755 5888
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcC
Q 014945 300 LIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG 356 (415)
Q Consensus 300 ~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~ 356 (415)
..-||.=||..+...|+....+.+.|+-..+++++.++ +++||.+|..++-.+..+
T Consensus 384 L~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~-d~~Vry~ALlavQ~lm~~ 439 (442)
T KOG2759|consen 384 LCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHE-DPEVRYHALLAVQKLMVH 439 (442)
T ss_pred eehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCC-CchHHHHHHHHHHHHHhh
Confidence 88999999999999999999888999999999999999 999999999998877653
No 64
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.82 E-value=9.1e-06 Score=78.31 Aligned_cols=261 Identities=16% Similarity=0.209 Sum_probs=159.3
Q ss_pred hHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHH
Q 014945 116 VPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLV 195 (415)
Q Consensus 116 i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~ 195 (415)
.+.+.+=|++++ .-+.-.|+.+|++++. +|.... ..|-+.+++++.++.++..|+.|...+..-.|..-..
T Consensus 109 tNslknDL~s~n-q~vVglAL~alg~i~s--~Emard-----lapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~- 179 (866)
T KOG1062|consen 109 TNSLKNDLNSSN-QYVVGLALCALGNICS--PEMARD-----LAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEH- 179 (866)
T ss_pred HHHHHhhccCCC-eeehHHHHHHhhccCC--HHHhHH-----hhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHH-
Confidence 455666677777 7788888999999887 554433 4677888999999999999999999988776654333
Q ss_pred HhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcC---------------CChhHHHH
Q 014945 196 LSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHS---------------NDDEVLTD 260 (415)
Q Consensus 196 ~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~---------------~d~~v~~~ 260 (415)
+++..-.+| .+.+..+....+..+..+|...+. .......+.|.++..|+. +||-++..
T Consensus 180 ----f~~~~~~lL-~ek~hGVL~~~l~l~~e~c~~~~~-~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~ 253 (866)
T KOG1062|consen 180 ----FVIAFRKLL-CEKHHGVLIAGLHLITELCKISPD-ALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIR 253 (866)
T ss_pred ----hhHHHHHHH-hhcCCceeeeHHHHHHHHHhcCHH-HHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHH
Confidence 334444444 334444444444444455544221 111122233333333310 24555555
Q ss_pred HHHHHHHhccCChHHHHHHHH--------------------cCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHH
Q 014945 261 ACWALSYLSDGTNDKIQAVIE--------------------AGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQC 320 (415)
Q Consensus 261 a~~~l~~l~~~~~~~~~~~~~--------------------~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~ 320 (415)
+++.|.-+..++.+..+.+.+ ...+..+..+ .++..++..|+.+||.+..+.+.++++
T Consensus 254 iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I--~~~~~LrvlainiLgkFL~n~d~NirY 331 (866)
T KOG1062|consen 254 ILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDI--RSNSGLRVLAINILGKFLLNRDNNIRY 331 (866)
T ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhc--cCCchHHHHHHHHHHHHhcCCccceee
Confidence 555555555544433332211 0112222222 245668889999999998887765554
Q ss_pred HHH----------CCCh----HHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHH
Q 014945 321 IIN----------HQAL----PCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKK 386 (415)
Q Consensus 321 ~~~----------~~~l----~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~ 386 (415)
+-- ..++ ..++.+|+++ |..+|+.|.-.+..+... .++.. ++..|+++|...+++.+.
T Consensus 332 vaLn~L~r~V~~d~~avqrHr~tIleCL~Dp-D~SIkrralELs~~lvn~--~Nv~~-----mv~eLl~fL~~~d~~~k~ 403 (866)
T KOG1062|consen 332 VALNMLLRVVQQDPTAVQRHRSTILECLKDP-DVSIKRRALELSYALVNE--SNVRV-----MVKELLEFLESSDEDFKA 403 (866)
T ss_pred eehhhHHhhhcCCcHHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHhcc--ccHHH-----HHHHHHHHHHhccHHHHH
Confidence 321 1111 4577888888 888999888888877743 33444 355778888888888888
Q ss_pred HHHHHHHHHhCCCCH
Q 014945 387 EAAWAISNATSGGSN 401 (415)
Q Consensus 387 ~a~~aL~nl~~~~~~ 401 (415)
..+.-+..+++.-.+
T Consensus 404 ~~as~I~~laEkfaP 418 (866)
T KOG1062|consen 404 DIASKIAELAEKFAP 418 (866)
T ss_pred HHHHHHHHHHHhcCC
Confidence 888888888865543
No 65
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.79 E-value=4.3e-07 Score=89.31 Aligned_cols=247 Identities=15% Similarity=0.202 Sum_probs=193.3
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhH
Q 014945 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 151 (415)
Q Consensus 72 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~ 151 (415)
.+|.+++-|-|+- -+..|+..|..++... ...+.....-|++|..+++|+++. .+++..-+.+.+.|...++.+..
T Consensus 473 QLPiVLQVLLSQv--HRlRAL~LL~RFLDlG-pWAV~LaLsVGIFPYVLKLLQS~a-~ELrpiLVFIWAKILAvD~SCQ~ 548 (1387)
T KOG1517|consen 473 QLPIVLQVLLSQV--HRLRALVLLARFLDLG-PWAVDLALSVGIFPYVLKLLQSSA-RELRPILVFIWAKILAVDPSCQA 548 (1387)
T ss_pred hcchHHHHHHHHH--HHHHHHHHHHHHhccc-hhhhhhhhccchHHHHHHHhccch-HhhhhhHHHHHHHHHhcCchhHH
Confidence 4566666655432 3566888888888664 666677778899999999999998 89999999999998887799998
Q ss_pred HHHhCCChHHHHHhhCC-C--CHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhh
Q 014945 152 VVIDHGAVPIFVRLLSS-P--TDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC 228 (415)
Q Consensus 152 ~~~~~g~i~~L~~ll~~-~--~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~ 228 (415)
.+++.++-..+++.|.. . +++-+..|+..|+.|..+-+-.+..+++.+.+...+..|+.+..+-++.-++-+|..|-
T Consensus 549 dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW 628 (1387)
T KOG1517|consen 549 DLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLW 628 (1387)
T ss_pred HHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHh
Confidence 89988888888888876 2 45889999999999998888888889998899988999955456778888999999999
Q ss_pred hCCCCCchhhh-hchHHHHHHhhcCCChhHHHHHHHHHHHhccC----ChHHHHHH------------HHcCcH---HHH
Q 014945 229 RGKPQPLFEQT-RPALPALERLIHSNDDEVLTDACWALSYLSDG----TNDKIQAV------------IEAGVC---PRL 288 (415)
Q Consensus 229 ~~~~~~~~~~~-~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~----~~~~~~~~------------~~~~~i---~~L 288 (415)
.+.+...+... ..+...|..+|.++-++|+..|+.+|+.+..+ .++..... ++..+. -.+
T Consensus 629 ~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~l 708 (1387)
T KOG1517|consen 629 EDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSL 708 (1387)
T ss_pred hhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHH
Confidence 88766555544 56788899999999999999999999998764 23332222 222222 256
Q ss_pred HHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHH
Q 014945 289 VELLRHPSPSVLIPALRTVGNIVTGDDMQTQCII 322 (415)
Q Consensus 289 ~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~ 322 (415)
+..+++..+-++....-+++.++.+.......+.
T Consensus 709 l~~vsdgsplvr~ev~v~ls~~~~g~~~~~~~va 742 (1387)
T KOG1517|consen 709 LALVSDGSPLVRTEVVVALSHFVVGYVSHLKVVA 742 (1387)
T ss_pred HHHHhccchHHHHHHHHHHHHHHHhhHHHhHHHh
Confidence 6777888899999999999999988765554443
No 66
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=98.79 E-value=4e-08 Score=89.85 Aligned_cols=282 Identities=17% Similarity=0.235 Sum_probs=194.4
Q ss_pred HHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCc
Q 014945 110 VIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP 189 (415)
Q Consensus 110 ~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~ 189 (415)
+.+..+.+.|+++|+.++ ..+..-+...++|....-..-+..+...|+|..|+.++.+.+..++....|.+.++..++.
T Consensus 427 L~d~~I~elLi~~Ls~Pe-imi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq 505 (743)
T COG5369 427 LLDYPIVELLIDALSNPE-IMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQ 505 (743)
T ss_pred ccccchHHHHHHHhcCcc-ceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcCc
Confidence 557778999999999987 7888888889999887666777889999999999999999999999999999999986654
Q ss_pred hh-HHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCC--Cchhhh------hchHHHHHHhhcCCChhHHHH
Q 014945 190 KC-RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQ--PLFEQT------RPALPALERLIHSNDDEVLTD 260 (415)
Q Consensus 190 ~~-~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~--~~~~~~------~~~l~~l~~lL~~~d~~v~~~ 260 (415)
.. +-..+..-++..++... +++...++..+...+.|+..+... ...... .-+...+.+.+...+|-....
T Consensus 506 ~~ekf~~Lakig~~kvl~~~-NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~i~~ 584 (743)
T COG5369 506 KNEKFKFLAKIGVEKVLSYT-NDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEENNPMEILE 584 (743)
T ss_pred chhhhhhHHhcCHHHHHHHh-cCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHhcCchhhhh
Confidence 32 33455666888999998 888889999999999999874311 111111 235667778888888777778
Q ss_pred HHHHHHHhccCChHHHHHHHHc-CcHHHHHHhcC-----------CCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChH
Q 014945 261 ACWALSYLSDGTNDKIQAVIEA-GVCPRLVELLR-----------HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALP 328 (415)
Q Consensus 261 a~~~l~~l~~~~~~~~~~~~~~-~~i~~L~~lL~-----------~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~ 328 (415)
.|..+.+++..+++..+.+.+. .++..+..+|. +.+..+..+-..+.-++....+.....+.-. |
T Consensus 585 ~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~l~e~~d~f~r~~~~~---p 661 (743)
T COG5369 585 GCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVNLSENSDKFKRLVLTT---P 661 (743)
T ss_pred hHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeeecccccccccccceecC---C
Confidence 8999999887776655544432 44444444442 1112333333333334433222221111100 1
Q ss_pred HHHHHhcCC--CccchHHHHHHHHHHHhc---CCH------HHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHh
Q 014945 329 CLLDLLTQN--YKKSIKKEACWTISNITA---GNV------NQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT 396 (415)
Q Consensus 329 ~L~~ll~~~--~~~~v~~~a~~~l~nl~~---~~~------~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~ 396 (415)
.+=.+=+++ .++++-.+..|.+.|+.. ++. +.++.+++.|+-+.+..+-.++++.|++.+-.||.++-
T Consensus 662 ~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e~l~k~q~~~Sl~vrek~~taL~~l~ 740 (743)
T COG5369 662 HLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIREWLVKIQAKDSLIVREKIGTALENLR 740 (743)
T ss_pred CccccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHHHHHHHhccCcHHHHHHHHHHHHhhh
Confidence 111111111 144577788898888764 233 66778888998888888888888999999999998863
No 67
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=98.78 E-value=5.2e-07 Score=84.06 Aligned_cols=304 Identities=15% Similarity=0.129 Sum_probs=185.9
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhccC-CCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhH
Q 014945 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIE-RSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 151 (415)
Q Consensus 73 i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~ 151 (415)
+..++..|++..|.++..|+.....+...- .....+.+...| ..|.+.|.... +++.-..+.+++.|.+...-...
T Consensus 606 vStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg--~iLyE~lge~y-pEvLgsil~Ai~~I~sv~~~~~m 682 (975)
T COG5181 606 VSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLG--NILYENLGEDY-PEVLGSILKAICSIYSVHRFRSM 682 (975)
T ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHh--HHHHHhcCccc-HHHHHHHHHHHHHHhhhhccccc
Confidence 566778889999999999988766553211 012233444545 34667777766 88877777777766653111100
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCC
Q 014945 152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK 231 (415)
Q Consensus 152 ~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~ 231 (415)
.---.|++|.|..+|.+.+.++....+..++.|+..+|+....--.-.+--.|+..| .+.+.+++++|..++..+++.-
T Consensus 683 qpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~L-ks~nKeiRR~A~~tfG~Is~ai 761 (975)
T COG5181 683 QPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSL-KSWNKEIRRNATETFGCISRAI 761 (975)
T ss_pred CCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHH-HHhhHHHHHhhhhhhhhHHhhc
Confidence 001148999999999999999999999999999988775322111111233567777 7789999999999999998763
Q ss_pred CCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhh
Q 014945 232 PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV 311 (415)
Q Consensus 232 ~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~ 311 (415)
.-..++..|+.-|+..+...+....-+++-.+...... .++|.|+.=-..++..++.-.+++++.+.
T Consensus 762 ------GPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpf-------sVlP~lm~dY~TPe~nVQnGvLkam~fmF 828 (975)
T COG5181 762 ------GPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPF-------SVLPTLMSDYETPEANVQNGVLKAMCFMF 828 (975)
T ss_pred ------CHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCch-------hhHHHHHhcccCchhHHHHhHHHHHHHHH
Confidence 11345566666666665555544444444444322211 24566666666777788888888887776
Q ss_pred cCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHH--HHHHHHcCCHHHHHHHhccCCHHHHHHHH
Q 014945 312 TGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQ--IQAIIEAGIIGPLVNLLLNAEFEIKKEAA 389 (415)
Q Consensus 312 ~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~--~~~l~~~~~i~~L~~~l~~~~~~v~~~a~ 389 (415)
.......... -.-+.|.|-..|.+. ++.-|..|..++..++-+++.. .+..+. ++..|..-+-.+.|.+.....
T Consensus 829 eyig~~s~dY-vy~itPlleDAltDr-D~vhRqta~nvI~Hl~Lnc~gtg~eda~IH--LlNllwpNIle~sPhvi~~~~ 904 (975)
T COG5181 829 EYIGQASLDY-VYSITPLLEDALTDR-DPVHRQTAMNVIRHLVLNCPGTGDEDAAIH--LLNLLWPNILEPSPHVIQSFD 904 (975)
T ss_pred HHHHHHHHHH-HHHhhHHHHhhhccc-chHHHHHHHHHHHHHhcCCCCcccHHHHHH--HHHHhhhhccCCCcHHHHHHH
Confidence 5322111111 123566777778777 8888888988888887643211 111111 122233223345666665554
Q ss_pred HHHHHHhC
Q 014945 390 WAISNATS 397 (415)
Q Consensus 390 ~aL~nl~~ 397 (415)
..+..++.
T Consensus 905 Eg~e~~~~ 912 (975)
T COG5181 905 EGMESFAT 912 (975)
T ss_pred HHHHHHHH
Confidence 44444443
No 68
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.78 E-value=2.1e-06 Score=73.66 Aligned_cols=269 Identities=15% Similarity=0.145 Sum_probs=170.5
Q ss_pred hHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHh--CCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHH
Q 014945 116 VPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVID--HGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRD 193 (415)
Q Consensus 116 i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~--~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~ 193 (415)
...++.++.+.+ |.++..|+..+..++.. .-+.+.+ ...++.+.+++....+ .+.|+.++.|++.+.. .++
T Consensus 5 l~elv~ll~~~s-P~v~~~AV~~l~~lt~~---~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~-l~~ 77 (353)
T KOG2973|consen 5 LVELVELLHSLS-PPVRKAAVEHLLGLTGR---GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEE-LRK 77 (353)
T ss_pred HHHHHHHhccCC-hHHHHHHHHHHhhcccc---chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHH-HHH
Confidence 456889999998 99999999999888875 2222222 2457888899887666 7889999999997765 667
Q ss_pred HHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhh-------hchHHHHHHhhcCC-C-hhHHHHHHHH
Q 014945 194 LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQT-------RPALPALERLIHSN-D-DEVLTDACWA 264 (415)
Q Consensus 194 ~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~-------~~~l~~l~~lL~~~-d-~~v~~~a~~~ 264 (415)
.+++. .+..++..+ .++...+...+|..++|+++.+........ .+.+.....+...+ + ..-....+..
T Consensus 78 ~ll~~-~~k~l~~~~-~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~v 155 (353)
T KOG2973|consen 78 KLLQD-LLKVLMDML-TDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPV 155 (353)
T ss_pred HHHHH-HHHHHHHHh-cCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHH
Confidence 77665 666677777 555566788899999999987532221111 23333333444332 1 1234556677
Q ss_pred HHHhccCChHHHHHHHHcC--cHHHHHHhcCCCChhhHH-HHHHHHHHhhcCChHHHHHHHHC--CChHHHH--------
Q 014945 265 LSYLSDGTNDKIQAVIEAG--VCPRLVELLRHPSPSVLI-PALRTVGNIVTGDDMQTQCIINH--QALPCLL-------- 331 (415)
Q Consensus 265 l~~l~~~~~~~~~~~~~~~--~i~~L~~lL~~~~~~v~~-~a~~~l~nl~~~~~~~~~~~~~~--~~l~~L~-------- 331 (415)
+++++.....+ ..+.... ..+.+..+-+ .+..+|. ..+++|-|.|.....+ ..+++. .++|.++
T Consensus 156 f~nls~~~~gR-~l~~~~k~~p~~kll~ft~-~~s~vRr~GvagtlkN~cFd~~~h-~~lL~e~~~lLp~iLlPlagpee 232 (353)
T KOG2973|consen 156 FANLSQFEAGR-KLLLEPKRFPDQKLLPFTS-EDSQVRRGGVAGTLKNCCFDAKLH-EVLLDESINLLPAILLPLAGPEE 232 (353)
T ss_pred HHHHhhhhhhh-hHhcchhhhhHhhhhcccc-cchhhhccchHHHHHhhhccchhH-HHHhcchHHHHHHHHhhcCCccc
Confidence 88888766554 2233332 2233444434 4445554 4777888888765433 223332 2233222
Q ss_pred -------------HHhcC----CCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccC-CHHHHHHHHHHHH
Q 014945 332 -------------DLLTQ----NYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA-EFEIKKEAAWAIS 393 (415)
Q Consensus 332 -------------~ll~~----~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~-~~~v~~~a~~aL~ 393 (415)
+++.. ..++.+|+.-.-+|.-+|+. ...+..+.+.|+.+.+-.+-++. ++++++ ||.-+.
T Consensus 233 ~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT-~~GRe~lR~kgvYpilRElhk~e~ded~~~-ace~vv 310 (353)
T KOG2973|consen 233 LSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCAT-RAGREVLRSKGVYPILRELHKWEEDEDIRE-ACEQVV 310 (353)
T ss_pred cCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhh-hHhHHHHHhcCchHHHHHHhcCCCcHHHHH-HHHHHH
Confidence 33321 11788999999999999984 45578889999999988887774 455554 555555
Q ss_pred HHhCC
Q 014945 394 NATSG 398 (415)
Q Consensus 394 nl~~~ 398 (415)
++...
T Consensus 311 q~Lv~ 315 (353)
T KOG2973|consen 311 QMLVR 315 (353)
T ss_pred HHHHh
Confidence 55543
No 69
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.78 E-value=8.4e-06 Score=76.67 Aligned_cols=310 Identities=17% Similarity=0.209 Sum_probs=202.8
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhH
Q 014945 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 151 (415)
Q Consensus 72 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~ 151 (415)
.+..+++.+....+.+|.....++..+........... +.+.+.++++..+ ..-+..+++.+..+..+. ...
T Consensus 97 ~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~~~-----~l~~l~~ll~~~~-~~~~~~aa~~~ag~v~g~--~i~ 168 (569)
T KOG1242|consen 97 IIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSGEY-----VLELLLELLTSTK-IAERAGAAYGLAGLVNGL--GIE 168 (569)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCHHH-----HHHHHHHHhcccc-HHHHhhhhHHHHHHHcCc--HHh
Confidence 45777888888889999988888887754432222222 4677888888777 788999999999888753 334
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHH-HHHHHHHhcCC-CchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhh
Q 014945 152 VVIDHGAVPIFVRLLSSPTDDVREQ-AVWALGNVAGD-SPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 229 (415)
Q Consensus 152 ~~~~~g~i~~L~~ll~~~~~~v~~~-a~~~L~nl~~~-~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~ 229 (415)
.+.+.+++..+...+.+.....+.. +..+....++. ++..--.+.. .++.++... .+....++..+..+...+.+
T Consensus 169 ~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~--~lp~il~~~-~d~~~~Vr~Aa~~a~kai~~ 245 (569)
T KOG1242|consen 169 SLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVP--ILPSILTNF-GDKINKVREAAVEAAKAIMR 245 (569)
T ss_pred hhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHh--hHHHHHHHh-hccchhhhHHHHHHHHHHHH
Confidence 5566788999999888754443332 32222222211 1111011111 344444444 45567777777777666654
Q ss_pred CCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHH
Q 014945 230 GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 309 (415)
Q Consensus 230 ~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~n 309 (415)
.-+ ...+..++|.++.-+......-...++..++.++...+.+.. ..-..++|.+.+.|-+..+.++..+..+|-+
T Consensus 246 ~~~---~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs-~~lp~iiP~lsevl~DT~~evr~a~~~~l~~ 321 (569)
T KOG1242|consen 246 CLS---AYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLS-LCLPDLIPVLSEVLWDTKPEVRKAGIETLLK 321 (569)
T ss_pred hcC---cchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHH-HHHhHhhHHHHHHHccCCHHHHHHHHHHHHH
Confidence 431 122344555555555444555667788888888877776654 4556799999999999999999999999888
Q ss_pred hhcCCh-HHHHHHH------------------------------HCCCh----HHHHHHhcCCCccchHHHHHHHHHHHh
Q 014945 310 IVTGDD-MQTQCII------------------------------NHQAL----PCLLDLLTQNYKKSIKKEACWTISNIT 354 (415)
Q Consensus 310 l~~~~~-~~~~~~~------------------------------~~~~l----~~L~~ll~~~~~~~v~~~a~~~l~nl~ 354 (415)
++.--+ ..++.++ +.-.+ |.|.+-+... +..+++.++.+++|++
T Consensus 322 ~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eR-st~~kr~t~~IidNm~ 400 (569)
T KOG1242|consen 322 FGSVIDNPDIQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAER-STSIKRKTAIIIDNMC 400 (569)
T ss_pred HHHhhccHHHHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhc-cchhhhhHHHHHHHHH
Confidence 875321 1122111 11112 3333333444 6778899999999999
Q ss_pred c--CCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhCC
Q 014945 355 A--GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSG 398 (415)
Q Consensus 355 ~--~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~ 398 (415)
. .++..+..++.. ++|.|-..+.+..|++|..+..||+.+...
T Consensus 401 ~LveDp~~lapfl~~-Llp~lk~~~~d~~PEvR~vaarAL~~l~e~ 445 (569)
T KOG1242|consen 401 KLVEDPKDLAPFLPS-LLPGLKENLDDAVPEVRAVAARALGALLER 445 (569)
T ss_pred HhhcCHHHHhhhHHH-HhhHHHHHhcCCChhHHHHHHHHHHHHHHH
Confidence 8 367777777665 788888888888999999999999887754
No 70
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.71 E-value=1.2e-06 Score=80.83 Aligned_cols=318 Identities=11% Similarity=0.074 Sum_probs=204.4
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhH
Q 014945 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 151 (415)
Q Consensus 72 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~ 151 (415)
.+++++..+..+|..++..|+..+.+++...+.+.... -..+...+.++..+++ ..++. ++..+-.+..+-.....
T Consensus 85 iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~--Fn~iFdvL~klsaDsd-~~V~~-~aeLLdRLikdIVte~~ 160 (675)
T KOG0212|consen 85 IVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVY--FNEIFDVLCKLSADSD-QNVRG-GAELLDRLIKDIVTESA 160 (675)
T ss_pred hhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccc--hHHHHHHHHHHhcCCc-ccccc-HHHHHHHHHHHhccccc
Confidence 57889999999999999999999998875442222221 2235667777777766 45543 44444443332111111
Q ss_pred -HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHH-hcCChHHHHHHhccchhHhHHHHHHHHHHHhhh
Q 014945 152 -VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVL-SNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 229 (415)
Q Consensus 152 -~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~-~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~ 229 (415)
.+-=.+.+|.|-.-+...++..|...+.-|..+-.-++ .+++- -..+++.|..+| .+++.+++..+-.+++++..
T Consensus 161 ~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~--~~m~~yl~~~ldGLf~~L-sD~s~eVr~~~~t~l~~fL~ 237 (675)
T KOG0212|consen 161 STFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPD--LEMISYLPSLLDGLFNML-SDSSDEVRTLTDTLLSEFLA 237 (675)
T ss_pred cccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCc--HHHHhcchHHHHHHHHHh-cCCcHHHHHHHHHHHHHHHH
Confidence 12212455655555666788888777777766643332 23332 122566777788 77788888777777777765
Q ss_pred CC-CCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChh-hHHHHHHH-
Q 014945 230 GK-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPS-VLIPALRT- 306 (415)
Q Consensus 230 ~~-~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~-v~~~a~~~- 306 (415)
.- ..+........++.++.-++++++.++..|+.-+..+..-.+... ...-+|++..+++++.++++. ++..+...
T Consensus 238 eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~-l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n 316 (675)
T KOG0212|consen 238 EIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDL-LLYLSGILTAILPCLSDTEEMSIKEYAQMVN 316 (675)
T ss_pred HHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcch-hhhhhhhhhhcccCCCCCccccHHHHHHHHH
Confidence 54 333333556788999999999999999888776766665443321 234468888889998877663 44443332
Q ss_pred --HHHhhcCChHHHHHHHHC-CChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHH
Q 014945 307 --VGNIVTGDDMQTQCIINH-QALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFE 383 (415)
Q Consensus 307 --l~nl~~~~~~~~~~~~~~-~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~ 383 (415)
+..++.... ..+. ++. .+++.+.+.+.+. ....|..+..-+..+-...|.+.-. ....+++.|++-|.+.+.+
T Consensus 317 ~~l~~l~s~~~-~~~~-id~~~ii~vl~~~l~~~-~~~tri~~L~Wi~~l~~~~p~ql~~-h~~~if~tLL~tLsd~sd~ 392 (675)
T KOG0212|consen 317 GLLLKLVSSER-LKEE-IDYGSIIEVLTKYLSDD-REETRIAVLNWIILLYHKAPGQLLV-HNDSIFLTLLKTLSDRSDE 392 (675)
T ss_pred HHHHHHHhhhh-hccc-cchHHHHHHHHHHhhcc-hHHHHHHHHHHHHHHHhhCcchhhh-hccHHHHHHHHhhcCchhH
Confidence 222222111 1111 333 4578888899888 8888888886666666655554322 2456899999999999999
Q ss_pred HHHHHHHHHHHHhCCCCH
Q 014945 384 IKKEAAWAISNATSGGSN 401 (415)
Q Consensus 384 v~~~a~~aL~nl~~~~~~ 401 (415)
|...++..+.+++...+.
T Consensus 393 vvl~~L~lla~i~~s~~~ 410 (675)
T KOG0212|consen 393 VVLLALSLLASICSSSNS 410 (675)
T ss_pred HHHHHHHHHHHHhcCccc
Confidence 999999999999987654
No 71
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.70 E-value=6.9e-06 Score=76.37 Aligned_cols=241 Identities=17% Similarity=0.050 Sum_probs=165.0
Q ss_pred cHHHHHHhhc-CCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhh
Q 014945 72 SLPAMVAGVW-SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 150 (415)
Q Consensus 72 ~i~~l~~~l~-~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~ 150 (415)
.++.++..|. ..++.+...++..+... + .+ ..+..|+..|.+.+ +.++..++..|+.+-..
T Consensus 55 a~~~L~~aL~~d~~~ev~~~aa~al~~~---~-~~--------~~~~~L~~~L~d~~-~~vr~aaa~ALg~i~~~----- 116 (410)
T TIGR02270 55 ATELLVSALAEADEPGRVACAALALLAQ---E-DA--------LDLRSVLAVLQAGP-EGLCAGIQAALGWLGGR----- 116 (410)
T ss_pred HHHHHHHHHhhCCChhHHHHHHHHHhcc---C-Ch--------HHHHHHHHHhcCCC-HHHHHHHHHHHhcCCch-----
Confidence 4667777774 45566655554444321 1 11 13788899998887 78999999999865442
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhC
Q 014945 151 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 230 (415)
Q Consensus 151 ~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~ 230 (415)
...+.|+.+|.+.++.++..++.+++..-. ...+.+...| ++.++.++..++.++..+...
T Consensus 117 ------~a~~~L~~~L~~~~p~vR~aal~al~~r~~------------~~~~~L~~~L-~d~d~~Vra~A~raLG~l~~~ 177 (410)
T TIGR02270 117 ------QAEPWLEPLLAASEPPGRAIGLAALGAHRH------------DPGPALEAAL-THEDALVRAAALRALGELPRR 177 (410)
T ss_pred ------HHHHHHHHHhcCCChHHHHHHHHHHHhhcc------------ChHHHHHHHh-cCCCHHHHHHHHHHHHhhccc
Confidence 457788889999999999888888876321 1345777888 688899999999999887643
Q ss_pred CCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHh
Q 014945 231 KPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI 310 (415)
Q Consensus 231 ~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl 310 (415)
..+|.|...+.+.|+.|+..|++++..+-. +. ....+..+...........+..+++..
T Consensus 178 ----------~a~~~L~~al~d~~~~VR~aA~~al~~lG~--~~---------A~~~l~~~~~~~g~~~~~~l~~~lal~ 236 (410)
T TIGR02270 178 ----------LSESTLRLYLRDSDPEVRFAALEAGLLAGS--RL---------AWGVCRRFQVLEGGPHRQRLLVLLAVA 236 (410)
T ss_pred ----------cchHHHHHHHcCCCHHHHHHHHHHHHHcCC--Hh---------HHHHHHHHHhccCccHHHHHHHHHHhC
Confidence 456667788889999999999999977643 21 123444433333433444433344333
Q ss_pred hcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHH
Q 014945 311 VTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAW 390 (415)
Q Consensus 311 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~ 390 (415)
+.+ ..++.|..+++++ . ++..++++++.+.. +. .++.|+..+.+ +.++..|.+
T Consensus 237 --~~~---------~a~~~L~~ll~d~-~--vr~~a~~AlG~lg~--p~---------av~~L~~~l~d--~~~aR~A~e 289 (410)
T TIGR02270 237 --GGP---------DAQAWLRELLQAA-A--TRREALRAVGLVGD--VE---------AAPWCLEAMRE--PPWARLAGE 289 (410)
T ss_pred --Cch---------hHHHHHHHHhcCh-h--hHHHHHHHHHHcCC--cc---------hHHHHHHHhcC--cHHHHHHHH
Confidence 222 4577888888776 3 89999999997754 33 57778887764 339999999
Q ss_pred HHHHHhC
Q 014945 391 AISNATS 397 (415)
Q Consensus 391 aL~nl~~ 397 (415)
++..++-
T Consensus 290 A~~~ItG 296 (410)
T TIGR02270 290 AFSLITG 296 (410)
T ss_pred HHHHhhC
Confidence 9999884
No 72
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.66 E-value=1.4e-05 Score=73.57 Aligned_cols=250 Identities=26% Similarity=0.322 Sum_probs=173.3
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhH
Q 014945 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 151 (415)
Q Consensus 72 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~ 151 (415)
.++.+++.+.+.++.++..++..+..+-.. ..++.+..++.+.+ +.++..|+.+|+.+-..
T Consensus 44 ~~~~~~~~l~~~~~~vr~~aa~~l~~~~~~------------~av~~l~~~l~d~~-~~vr~~a~~aLg~~~~~------ 104 (335)
T COG1413 44 AADELLKLLEDEDLLVRLSAAVALGELGSE------------EAVPLLRELLSDED-PRVRDAAADALGELGDP------ 104 (335)
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHhhhchH------------HHHHHHHHHhcCCC-HHHHHHHHHHHHccCCh------
Confidence 678899999999999999999887666432 25899999999999 89999999988876642
Q ss_pred HHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchh-----------HhHHHH
Q 014945 152 VVIDHGAVPIFVRLLS-SPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAK-----------LSMLRN 219 (415)
Q Consensus 152 ~~~~~g~i~~L~~ll~-~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~-----------~~~~~~ 219 (415)
..++.++.++. +++..++..+.++|+.+-... .+.+++..+.+... ..++..
T Consensus 105 -----~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~-----------a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~ 168 (335)
T COG1413 105 -----EAVPPLVELLENDENEGVRAAAARALGKLGDER-----------ALDPLLEALQDEDSGSAAAALDAALLDVRAA 168 (335)
T ss_pred -----hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh-----------hhHHHHHHhccchhhhhhhhccchHHHHHHH
Confidence 35888999888 589999999999999884222 36677777733221 123444
Q ss_pred HHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhh
Q 014945 220 ATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSV 299 (415)
Q Consensus 220 a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v 299 (415)
+...+..+-. ...++.+..++.+.+..++..+..+++.+.... ..+.+.+...+.++++.+
T Consensus 169 a~~~l~~~~~----------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~~v 229 (335)
T COG1413 169 AAEALGELGD----------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDESLEV 229 (335)
T ss_pred HHHHHHHcCC----------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCHHH
Confidence 4444444332 355678888899888999999999999887654 234578888899999999
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhcc
Q 014945 300 LIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN 379 (415)
Q Consensus 300 ~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~ 379 (415)
+..++..+|.+-.... .+.+...+... +..++..+...+... +... ....+...+.+
T Consensus 230 r~~~~~~l~~~~~~~~-----------~~~l~~~l~~~-~~~~~~~~~~~~~~~--~~~~---------~~~~l~~~~~~ 286 (335)
T COG1413 230 RKAALLALGEIGDEEA-----------VDALAKALEDE-DVILALLAAAALGAL--DLAE---------AALPLLLLLID 286 (335)
T ss_pred HHHHHHHhcccCcchh-----------HHHHHHHHhcc-chHHHHHHHHHhccc--Cchh---------hHHHHHHHhhc
Confidence 9999999988865432 45566666666 555555555444411 1111 13334444455
Q ss_pred CCHHHHHHHHHHHHHHhCC
Q 014945 380 AEFEIKKEAAWAISNATSG 398 (415)
Q Consensus 380 ~~~~v~~~a~~aL~nl~~~ 398 (415)
.+..++..+..++......
T Consensus 287 ~~~~~~~~~~~~l~~~~~~ 305 (335)
T COG1413 287 EANAVRLEAALALGQIGQE 305 (335)
T ss_pred chhhHHHHHHHHHHhhccc
Confidence 5555666666666555544
No 73
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.66 E-value=1e-05 Score=77.98 Aligned_cols=291 Identities=16% Similarity=0.183 Sum_probs=156.2
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHH
Q 014945 74 PAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVV 153 (415)
Q Consensus 74 ~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~ 153 (415)
..+.+-|++.+.-++-.|+.++.++.+ .+-++. +.|.+.+++++.+ +-++..|+.|...+....|+..+.+
T Consensus 110 NslknDL~s~nq~vVglAL~alg~i~s---~Emard-----lapeVe~Ll~~~~-~~irKKA~Lca~r~irK~P~l~e~f 180 (866)
T KOG1062|consen 110 NSLKNDLNSSNQYVVGLALCALGNICS---PEMARD-----LAPEVERLLQHRD-PYIRKKAALCAVRFIRKVPDLVEHF 180 (866)
T ss_pred HHHHhhccCCCeeehHHHHHHhhccCC---HHHhHH-----hhHHHHHHHhCCC-HHHHHHHHHHHHHHHHcCchHHHHh
Confidence 444555556666666666666666653 223332 2456666666666 6677777766666665555544433
Q ss_pred Hh----------CCC----hHHHHHhhCCCC------HHHHHHHHHHHHHhcCCC--ch-----hHHHHHhcCChHHHHH
Q 014945 154 ID----------HGA----VPIFVRLLSSPT------DDVREQAVWALGNVAGDS--PK-----CRDLVLSNGALMPLLA 206 (415)
Q Consensus 154 ~~----------~g~----i~~L~~ll~~~~------~~v~~~a~~~L~nl~~~~--~~-----~~~~~~~~g~i~~L~~ 206 (415)
+. .|+ +..+..++.... ..+...-+..|.++.... ++ ..+.+++. -+-.+++
T Consensus 181 ~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi-~iLrlLr 259 (866)
T KOG1062|consen 181 VIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQI-RILRLLR 259 (866)
T ss_pred hHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHH-HHHHHHH
Confidence 21 122 222223322211 123344444555554221 11 01111111 0112233
Q ss_pred HhccchhHhHHHHHHHHHHHhhhCCCC-C-------------------chhhhhchHHHHHHhhcCCChhHHHHHHHHHH
Q 014945 207 QFNEHAKLSMLRNATWTLSNFCRGKPQ-P-------------------LFEQTRPALPALERLIHSNDDEVLTDACWALS 266 (415)
Q Consensus 207 ~l~~~~~~~~~~~a~~~l~~l~~~~~~-~-------------------~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~ 266 (415)
+| -..+.+.-......|..+++.-.. . ......-++..|-++|.+.|..++.-++..|.
T Consensus 260 iL-Gq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~ 338 (866)
T KOG1062|consen 260 IL-GQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLL 338 (866)
T ss_pred Hh-cCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHH
Confidence 33 222333333344444444432100 0 00111234556677777777777777777777
Q ss_pred HhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHH
Q 014945 267 YLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEA 346 (415)
Q Consensus 267 ~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a 346 (415)
.+...++...+.-. ..++++|++++..++..|+..+-.++... ++.. .+..|+.+|... ++..+...
T Consensus 339 r~V~~d~~avqrHr-----~tIleCL~DpD~SIkrralELs~~lvn~~--Nv~~-----mv~eLl~fL~~~-d~~~k~~~ 405 (866)
T KOG1062|consen 339 RVVQQDPTAVQRHR-----STILECLKDPDVSIKRRALELSYALVNES--NVRV-----MVKELLEFLESS-DEDFKADI 405 (866)
T ss_pred hhhcCCcHHHHHHH-----HHHHHHhcCCcHHHHHHHHHHHHHHhccc--cHHH-----HHHHHHHHHHhc-cHHHHHHH
Confidence 77766665443222 45889999999999999999998888654 3442 355788999888 89999999
Q ss_pred HHHHHHHhc-CCHHHHHHH-------------HHcCCHHHHHHHhccCCHHHHHHH
Q 014945 347 CWTISNITA-GNVNQIQAI-------------IEAGIIGPLVNLLLNAEFEIKKEA 388 (415)
Q Consensus 347 ~~~l~nl~~-~~~~~~~~l-------------~~~~~i~~L~~~l~~~~~~v~~~a 388 (415)
+.-+..++. ..|+....+ +...++..++.++.+...+....+
T Consensus 406 as~I~~laEkfaP~k~W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~ 461 (866)
T KOG1062|consen 406 ASKIAELAEKFAPDKRWHIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYA 461 (866)
T ss_pred HHHHHHHHHhcCCcchhHHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhhHH
Confidence 888888886 233332211 223346666666665533333333
No 74
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.64 E-value=2.3e-06 Score=81.47 Aligned_cols=262 Identities=16% Similarity=0.167 Sum_probs=165.6
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhccCC-CCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCC--chhh
Q 014945 74 PAMVAGVWSDDRNIQLDATTQFRKLLSIER-SPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGT--SENT 150 (415)
Q Consensus 74 ~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~--~~~~ 150 (415)
..++..|++..+.++++|+..+..++..-+ ...-+.+-..|+ .|.+.|.... +++.-..+.++..|.... ....
T Consensus 802 stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEylgeey-pEvLgsILgAikaI~nvigm~km~ 878 (1172)
T KOG0213|consen 802 STILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYLGEEY-PEVLGSILGAIKAIVNVIGMTKMT 878 (1172)
T ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhcCccc-HHHHHHHHHHHHHHHHhccccccC
Confidence 345567788899999999988877653211 111223444553 4678888776 887665555555544321 1111
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhC
Q 014945 151 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 230 (415)
Q Consensus 151 ~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~ 230 (415)
.. -.+++|.|.-+|.+.+.++++.++..++.|+..++++...--.-.+--.|+.+| ...+.++++++..++..++..
T Consensus 879 pP--i~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelL-kahkK~iRRaa~nTfG~Iaka 955 (1172)
T KOG0213|consen 879 PP--IKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELL-KAHKKEIRRAAVNTFGYIAKA 955 (1172)
T ss_pred CC--hhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhhHHHHh
Confidence 11 137899999999999999999999999999987765322111111233567777 778889999999999999876
Q ss_pred CCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHh
Q 014945 231 KPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI 310 (415)
Q Consensus 231 ~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl 310 (415)
-. -..++..|+.-|+..+...+....-+|+-.+..+... .++|.|++--..++..|+.-.+++++.+
T Consensus 956 IG------PqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pF-------tVLPalmneYrtPe~nVQnGVLkalsf~ 1022 (1172)
T KOG0213|consen 956 IG------PQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPF-------TVLPALMNEYRTPEANVQNGVLKALSFM 1022 (1172)
T ss_pred cC------HHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCch-------hhhHHHHhhccCchhHHHHhHHHHHHHH
Confidence 31 1345555666565555444444333444443322211 2456666666677888999898888877
Q ss_pred hcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcC
Q 014945 311 VTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG 356 (415)
Q Consensus 311 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~ 356 (415)
...-.+.....+ .-+.|.|-..|.+. +..-|..|+.++..++-+
T Consensus 1023 FeyigemskdYi-yav~PlleDAlmDr-D~vhRqta~~~I~Hl~Lg 1066 (1172)
T KOG0213|consen 1023 FEYIGEMSKDYI-YAVTPLLEDALMDR-DLVHRQTAMNVIKHLALG 1066 (1172)
T ss_pred HHHHHHHhhhHH-HHhhHHHHHhhccc-cHHHHHHHHHHHHHHhcC
Confidence 653222111111 13567777777777 888888888888877754
No 75
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.64 E-value=1.7e-05 Score=68.29 Aligned_cols=271 Identities=15% Similarity=0.225 Sum_probs=174.8
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHH--hcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchh
Q 014945 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVI--QSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN 149 (415)
Q Consensus 72 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~--~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~ 149 (415)
.+..++.++.+.+|.++..|+..+..+... +.+.+. +.-.++.+.+++...+ + -..|+.++.|++.. ...
T Consensus 4 ~l~elv~ll~~~sP~v~~~AV~~l~~lt~~----~~~~~~~~~~~~lk~l~qL~~~~~-~--~~~a~~alVnlsq~-~~l 75 (353)
T KOG2973|consen 4 ELVELVELLHSLSPPVRKAAVEHLLGLTGR----GLQSLSKYSEALLKDLTQLLKDLD-P--AEPAATALVNLSQK-EEL 75 (353)
T ss_pred HHHHHHHHhccCChHHHHHHHHHHhhcccc----chhhhccchhhhHHHHHHHccCcc-c--ccHHHHHHHHHHhh-HHH
Confidence 346789999999999999999888887543 222222 3346788999998876 4 67899999999985 666
Q ss_pred hHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcC-----ChHHHHHHhcc-chh-HhHHHHHHH
Q 014945 150 TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNG-----ALMPLLAQFNE-HAK-LSMLRNATW 222 (415)
Q Consensus 150 ~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g-----~i~~L~~~l~~-~~~-~~~~~~a~~ 222 (415)
+..++.. .+..++..+.++...+.+..+..|.|++.+...+........ ++..++....+ +.+ ..-..+.+.
T Consensus 76 ~~~ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~ 154 (353)
T KOG2973|consen 76 RKKLLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAP 154 (353)
T ss_pred HHHHHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHH
Confidence 7777665 677777777777777888999999999998876655544322 34444444323 222 234567788
Q ss_pred HHHHhhhCCCCCchhhhhchHH--HHHHhhcCCChhHHH-HHHHHHHHhccCChHHHHHHHHc--CcHHHHH--------
Q 014945 223 TLSNFCRGKPQPLFEQTRPALP--ALERLIHSNDDEVLT-DACWALSYLSDGTNDKIQAVIEA--GVCPRLV-------- 289 (415)
Q Consensus 223 ~l~~l~~~~~~~~~~~~~~~l~--~l~~lL~~~d~~v~~-~a~~~l~~l~~~~~~~~~~~~~~--~~i~~L~-------- 289 (415)
+++|+++.............+| .+..+ .+.+..+|. ..+.+|.|.|-..... ..+++. ++++.++
T Consensus 155 vf~nls~~~~gR~l~~~~k~~p~~kll~f-t~~~s~vRr~GvagtlkN~cFd~~~h-~~lL~e~~~lLp~iLlPlagpee 232 (353)
T KOG2973|consen 155 VFANLSQFEAGRKLLLEPKRFPDQKLLPF-TSEDSQVRRGGVAGTLKNCCFDAKLH-EVLLDESINLLPAILLPLAGPEE 232 (353)
T ss_pred HHHHHhhhhhhhhHhcchhhhhHhhhhcc-cccchhhhccchHHHHHhhhccchhH-HHHhcchHHHHHHHHhhcCCccc
Confidence 8889988764444433333322 33333 335555543 4567777777544332 222222 2223222
Q ss_pred -------------HhcC-----CCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHH
Q 014945 290 -------------ELLR-----HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTIS 351 (415)
Q Consensus 290 -------------~lL~-----~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~ 351 (415)
+.|. .+++.++..-+.+|--+|... ..++.+.+.|+.+.+-.+=+..+++++++ +|.-++
T Consensus 233 ~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~-~GRe~lR~kgvYpilRElhk~e~ded~~~-ace~vv 310 (353)
T KOG2973|consen 233 LSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATR-AGREVLRSKGVYPILRELHKWEEDEDIRE-ACEQVV 310 (353)
T ss_pred cCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhh-HhHHHHHhcCchHHHHHHhcCCCcHHHHH-HHHHHH
Confidence 2231 346779999999998888754 46777888888888888777774566555 454444
Q ss_pred HHhc
Q 014945 352 NITA 355 (415)
Q Consensus 352 nl~~ 355 (415)
++..
T Consensus 311 q~Lv 314 (353)
T KOG2973|consen 311 QMLV 314 (353)
T ss_pred HHHH
Confidence 4443
No 76
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=98.62 E-value=5.1e-07 Score=84.10 Aligned_cols=237 Identities=16% Similarity=0.170 Sum_probs=156.0
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhH--HHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCC-CC
Q 014945 158 AVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR--DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP-QP 234 (415)
Q Consensus 158 ~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~--~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~-~~ 234 (415)
++..++.+|+++.+.++++|+...+.|+.--..|. ..+...|. .|..-| ....+++.-..+.++..+..... ..
T Consensus 605 ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~l-ge~ypEvLgsil~Ai~~I~sv~~~~~ 681 (975)
T COG5181 605 IVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENL-GEDYPEVLGSILKAICSIYSVHRFRS 681 (975)
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhc-CcccHHHHHHHHHHHHHHhhhhcccc
Confidence 56788889999999999999999998863211111 12222221 233334 45577777777777776665431 11
Q ss_pred chhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhc--
Q 014945 235 LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT-- 312 (415)
Q Consensus 235 ~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~-- 312 (415)
-..-+.+++|.|...|.+....|..+.+..++.++...++.+..---..+.-.|+..|.+.+.+++..|..++|-|+.
T Consensus 682 mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~ai 761 (975)
T COG5181 682 MQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAI 761 (975)
T ss_pred cCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhc
Confidence 122347899999999999999999999999999998776543211111344567788888889999999999888875
Q ss_pred CChHHHHHHHH-----------------------CCC---hHHHHHHhcCCCccchHHHHHHHHHHHhcCC-HHHHHHHH
Q 014945 313 GDDMQTQCIIN-----------------------HQA---LPCLLDLLTQNYKKSIKKEACWTISNITAGN-VNQIQAII 365 (415)
Q Consensus 313 ~~~~~~~~~~~-----------------------~~~---l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~-~~~~~~l~ 365 (415)
|+.+....+++ .|. +|.|+.=...+ +..|+.....+++.+.... ....+++.
T Consensus 762 GPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpfsVlP~lm~dY~TP-e~nVQnGvLkam~fmFeyig~~s~dYvy 840 (975)
T COG5181 762 GPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPFSVLPTLMSDYETP-EANVQNGVLKAMCFMFEYIGQASLDYVY 840 (975)
T ss_pred CHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCchhhHHHHHhcccCc-hhHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222221 233 34444444455 6678888888887776521 12223333
Q ss_pred HcCCHHHHHHHhccCCHHHHHHHHHHHHHHhCCCC
Q 014945 366 EAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGS 400 (415)
Q Consensus 366 ~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~ 400 (415)
. +.|.|-+.|.+.|+--|..|...+.+++.+++
T Consensus 841 ~--itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~ 873 (975)
T COG5181 841 S--ITPLLEDALTDRDPVHRQTAMNVIRHLVLNCP 873 (975)
T ss_pred H--hhHHHHhhhcccchHHHHHHHHHHHHHhcCCC
Confidence 2 67888889999999999999999999987653
No 77
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.61 E-value=2.4e-05 Score=74.61 Aligned_cols=260 Identities=15% Similarity=0.169 Sum_probs=183.0
Q ss_pred chHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHH
Q 014945 115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDL 194 (415)
Q Consensus 115 ~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 194 (415)
+-+-++.+|+++- +-+|..|+.++..+....|+... ..+|.|..-|.++|+.|+..|+..++.|+..+|.. .
T Consensus 145 La~Dv~tLL~ssk-pYvRKkAIl~lykvFLkYPeAlr-----~~FprL~EkLeDpDp~V~SAAV~VICELArKnPkn--y 216 (877)
T KOG1059|consen 145 LADDVFTLLNSSK-PYVRKKAILLLYKVFLKYPEALR-----PCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQN--Y 216 (877)
T ss_pred HHHHHHHHHhcCc-hHHHHHHHHHHHHHHHhhhHhHh-----hhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcc--c
Confidence 3456778888888 89999999999998876555433 36899999999999999999999999999888753 1
Q ss_pred HHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCC-hhHHHHHHHHHH--HhccC
Q 014945 195 VLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSND-DEVLTDACWALS--YLSDG 271 (415)
Q Consensus 195 ~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d-~~v~~~a~~~l~--~l~~~ 271 (415)
+ ..-|.+..+|..+.|.-+....+-.+.+|+...| .....++|.|..++++.. ..+...++.++. +++.+
T Consensus 217 -L--~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEP----RLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g 289 (877)
T KOG1059|consen 217 -L--QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEP----RLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSG 289 (877)
T ss_pred -c--cccHHHHHHHhccCCCeehHHHHHHHhhccccCc----hhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccC
Confidence 1 1456677777666676677777778888875533 233567888888887764 445555555543 33333
Q ss_pred ChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHH
Q 014945 272 TNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTIS 351 (415)
Q Consensus 272 ~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~ 351 (415)
.++... .+. =+++.|-.++.+.++.++-.++.+++.++...+..++. --+.++++|.+. |+.+|-.|.-.+.
T Consensus 290 ~~d~~a-siq-LCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa-----~kdlIlrcL~Dk-D~SIRlrALdLl~ 361 (877)
T KOG1059|consen 290 MSDHSA-SIQ-LCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQA-----HKDLILRCLDDK-DESIRLRALDLLY 361 (877)
T ss_pred CCCcHH-HHH-HHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHH-----hHHHHHHHhccC-CchhHHHHHHHHH
Confidence 211111 111 14688888889999999999999999999887765553 245789999999 9999999999998
Q ss_pred HHhcCCHHHHHHHHHcCCHHHHHHHhcc-CCHHHHHHHHHHHHHHhCCCCHHHH
Q 014945 352 NITAGNVNQIQAIIEAGIIGPLVNLLLN-AEFEIKKEAAWAISNATSGGSNEQI 404 (415)
Q Consensus 352 nl~~~~~~~~~~l~~~~~i~~L~~~l~~-~~~~v~~~a~~aL~nl~~~~~~~~~ 404 (415)
-+.. .+++..+ +..|+..+.. +....|.+.+.-+..++...+++.+
T Consensus 362 gmVs--kkNl~eI-----Vk~LM~~~~~ae~t~yrdell~~II~iCS~snY~~I 408 (877)
T KOG1059|consen 362 GMVS--KKNLMEI-----VKTLMKHVEKAEGTNYRDELLTRIISICSQSNYQYI 408 (877)
T ss_pred HHhh--hhhHHHH-----HHHHHHHHHhccchhHHHHHHHHHHHHhhhhhhhhh
Confidence 8885 3444443 3444444443 3346777777666666665555544
No 78
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.60 E-value=2.1e-05 Score=74.12 Aligned_cols=231 Identities=15% Similarity=0.129 Sum_probs=163.8
Q ss_pred chHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHH
Q 014945 115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDL 194 (415)
Q Consensus 115 ~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 194 (415)
++..|+.-++.+. +.+|.....||..+......... .-+.+.+.+++......-+..+.+.++.+..+... ..
T Consensus 97 ~~~~~~~~~~tps-~~~q~~~~~~l~~~~~~~~~~~~----~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i--~~ 169 (569)
T KOG1242|consen 97 IIEILLEELDTPS-KSVQRAVSTCLPPLVVLSKGLSG----EYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGI--ES 169 (569)
T ss_pred HHHHHHHhcCCCc-HHHHHHHHHHhhhHHHHhhccCH----HHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHH--hh
Confidence 5678888888888 99999999999876653221111 12467788888888888888999999999877653 56
Q ss_pred HHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCCh-
Q 014945 195 VLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTN- 273 (415)
Q Consensus 195 ~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~- 273 (415)
+.+.+++..+...+.+..+..-++.+..+.-..+..-.......+...+|.++..+.+..+.++..+..+...+...-+
T Consensus 170 ~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~ 249 (569)
T KOG1242|consen 170 LKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSA 249 (569)
T ss_pred hhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCc
Confidence 6677888888888843333333333444444444443444455667788888888888889999888777766543222
Q ss_pred HHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHH
Q 014945 274 DKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNI 353 (415)
Q Consensus 274 ~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl 353 (415)
.... -+++.++.-+....|.....++..+|.++...+.+.. ..-..++|.+.+.|.+. .+.+|+.+..++.++
T Consensus 250 ~aVK-----~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs-~~lp~iiP~lsevl~DT-~~evr~a~~~~l~~~ 322 (569)
T KOG1242|consen 250 YAVK-----LLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLS-LCLPDLIPVLSEVLWDT-KPEVRKAGIETLLKF 322 (569)
T ss_pred chhh-----HhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHH-HHHhHhhHHHHHHHccC-CHHHHHHHHHHHHHH
Confidence 1111 1345555555455888899999999999988886655 34448999999999999 999999999999999
Q ss_pred hc--CCHH
Q 014945 354 TA--GNVN 359 (415)
Q Consensus 354 ~~--~~~~ 359 (415)
+. .+++
T Consensus 323 ~svidN~d 330 (569)
T KOG1242|consen 323 GSVIDNPD 330 (569)
T ss_pred HHhhccHH
Confidence 87 4544
No 79
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.59 E-value=5.8e-06 Score=75.95 Aligned_cols=314 Identities=17% Similarity=0.172 Sum_probs=194.0
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCC-ChHHHHHHHHHHHHHhCCCchhhHH
Q 014945 74 PAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDD-FPQLQFEAAWALTNIASGTSENTRV 152 (415)
Q Consensus 74 ~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~-~~~i~~~a~~~L~~l~~~~~~~~~~ 152 (415)
+.+...+-+++.+++-.+.+.+|.++.. ....+.+.+.++--.++..|..++ +..-|.+|+..+..+..-.. ..+
T Consensus 28 ~~i~~~lL~~~~~vraa~yRilRy~i~d--~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~-~~~- 103 (371)
T PF14664_consen 28 ERIQCMLLSDSKEVRAAGYRILRYLISD--EESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKK-GPK- 103 (371)
T ss_pred HHHHHHHCCCcHHHHHHHHHHHHHHHcC--HHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcC-Ccc-
Confidence 3444345555688899999999998864 466677777776666666666543 35678899999988776421 111
Q ss_pred HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCC
Q 014945 153 VIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP 232 (415)
Q Consensus 153 ~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~ 232 (415)
.+..|++..++.+..++++.++..|+.+|+.++-.+| +.+...|++..|++.+.+ ...++...++.++.++...+.
T Consensus 104 ~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P---~lv~~~gG~~~L~~~l~d-~~~~~~~~l~~~lL~lLd~p~ 179 (371)
T PF14664_consen 104 EIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNP---ELVAECGGIRVLLRALID-GSFSISESLLDTLLYLLDSPR 179 (371)
T ss_pred cCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCH---HHHHHcCCHHHHHHHHHh-ccHhHHHHHHHHHHHHhCCcc
Confidence 1245788999999999999999999999999998888 478899999999999954 444488899999999998764
Q ss_pred CCchhhhhchHHHHHHhhcC-------CCh--hHHHHHHHHHHHhccCChHHHHHHHH-cCcHHHHHHhcCCCChhhHHH
Q 014945 233 QPLFEQTRPALPALERLIHS-------NDD--EVLTDACWALSYLSDGTNDKIQAVIE-AGVCPRLVELLRHPSPSVLIP 302 (415)
Q Consensus 233 ~~~~~~~~~~l~~l~~lL~~-------~d~--~v~~~a~~~l~~l~~~~~~~~~~~~~-~~~i~~L~~lL~~~~~~v~~~ 302 (415)
.........-+..+..-+.+ ++. +-...+..++..+...=++....-.+ ...+..|+..|..+++.++..
T Consensus 180 tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~ 259 (371)
T PF14664_consen 180 TRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKA 259 (371)
T ss_pred hhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHH
Confidence 44333222223333222211 122 34455555665554332222211111 146788999999999999999
Q ss_pred HHHHHHHhhcCChH-HHHHH------HHCCChHHHHHHh---cCCCccchHHHHHHHHHHHhcC-CHHHHHHHHHcCCHH
Q 014945 303 ALRTVGNIVTGDDM-QTQCI------INHQALPCLLDLL---TQNYKKSIKKEACWTISNITAG-NVNQIQAIIEAGIIG 371 (415)
Q Consensus 303 a~~~l~nl~~~~~~-~~~~~------~~~~~l~~L~~ll---~~~~~~~v~~~a~~~l~nl~~~-~~~~~~~l~~~~~i~ 371 (415)
.+..+-.+..-... ..... ...|-...-.++- ... ....... ..--.++..+ ..--...+++.|+++
T Consensus 260 Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~-~~~~~~~-~~~~~~l~~~y~aLll~ili~~gL~~ 337 (371)
T PF14664_consen 260 ILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEA-KSILPHR-SSKRPNLVNHYLALLLAILIEAGLLE 337 (371)
T ss_pred HHHHHHHHHCCCCCCcccchhhcccccccccccchhhhccccccc-ccccCcc-ccccccHHHHHHHHHHHHHHHcChHH
Confidence 99888887753221 11111 1111110000000 000 0000000 0001122211 112234567899999
Q ss_pred HHHHHhccC-CHHHHHHHHHHHHHHhC
Q 014945 372 PLVNLLLNA-EFEIKKEAAWAISNATS 397 (415)
Q Consensus 372 ~L~~~l~~~-~~~v~~~a~~aL~nl~~ 397 (415)
.|+++..+. +..+...|...|+++..
T Consensus 338 ~L~~li~~~~d~~l~~KAtlLL~elL~ 364 (371)
T PF14664_consen 338 ALVELIESSEDSSLSRKATLLLGELLH 364 (371)
T ss_pred HHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 999999986 88899999999988763
No 80
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.58 E-value=1.9e-06 Score=82.77 Aligned_cols=303 Identities=18% Similarity=0.193 Sum_probs=161.3
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHH
Q 014945 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRV 152 (415)
Q Consensus 73 i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~ 152 (415)
..++.+.++++++-++..++....++. ....+...+.|+++.|-.++.+++ +.+...|+.+|..|...++.....
T Consensus 123 ~~Pl~~~l~d~~~yvRktaa~~vakl~----~~~~~~~~~~gl~~~L~~ll~D~~-p~VVAnAlaaL~eI~e~~~~~~~~ 197 (734)
T KOG1061|consen 123 CDPLLKCLKDDDPYVRKTAAVCVAKLF----DIDPDLVEDSGLVDALKDLLSDSN-PMVVANALAALSEIHESHPSVNLL 197 (734)
T ss_pred HHHHHHhccCCChhHHHHHHHHHHHhh----cCChhhccccchhHHHHHHhcCCC-chHHHHHHHHHHHHHHhCCCCCcc
Confidence 467888889999999999999999885 455667778999999999999887 999999999999999876542222
Q ss_pred HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCC
Q 014945 153 VIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP 232 (415)
Q Consensus 153 ~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~ 232 (415)
.+....+..++..+..-++=-+...+.++.+..-.++ ++.. .++..+...| ++.+..+.-.+.-++.++....+
T Consensus 198 ~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~--~ea~---~i~~r~~p~L-qh~n~avvlsavKv~l~~~~~~~ 271 (734)
T KOG1061|consen 198 ELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDS--REAE---DICERLTPRL-QHANSAVVLSAVKVILQLVKYLK 271 (734)
T ss_pred cccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCc--hhHH---HHHHHhhhhh-ccCCcceEeehHHHHHHHHHHHH
Confidence 2222223333333322222112222223332222211 0110 1223333333 33333333333333333333221
Q ss_pred CCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChH----------------------HHHH----HHHcC---
Q 014945 233 QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTND----------------------KIQA----VIEAG--- 283 (415)
Q Consensus 233 ~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~----------------------~~~~----~~~~~--- 283 (415)
..........-|.++.++.... +++.-++.=+.-+....++ ..+. ..+++
T Consensus 272 ~~~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~q 350 (734)
T KOG1061|consen 272 QVNELLFKKVAPPLVTLLSSES-EIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQ 350 (734)
T ss_pred HHHHHHHHHhcccceeeecccc-hhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHH
Confidence 1111112222333333333222 2222222222211111110 0000 01111
Q ss_pred cHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHH
Q 014945 284 VCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQA 363 (415)
Q Consensus 284 ~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~ 363 (415)
++..+...-..-+.+....+++++|+++..-++. +++++.|+.++... ...+..+++..+..+....|.....
T Consensus 351 vl~El~eYatevD~~fvrkaIraig~~aik~e~~------~~cv~~lLell~~~-~~yvvqE~~vvi~dilRkyP~~~~~ 423 (734)
T KOG1061|consen 351 VLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS------NDCVSILLELLETK-VDYVVQEAIVVIRDILRKYPNKYES 423 (734)
T ss_pred HHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh------hhhHHHHHHHHhhc-ccceeeehhHHHHhhhhcCCCchhh
Confidence 1222222233456788899999999998754422 57888899999877 6677777888888777754443222
Q ss_pred HHHcCCHHHHHHHhcc-CCHHHHHHHHHHHHHHhCCC
Q 014945 364 IIEAGIIGPLVNLLLN-AEFEIKKEAAWAISNATSGG 399 (415)
Q Consensus 364 l~~~~~i~~L~~~l~~-~~~~v~~~a~~aL~nl~~~~ 399 (415)
+++.+...+.+ ++|+.|....|.++.-+..-
T Consensus 424 -----vv~~l~~~~~sl~epeak~amiWilg~y~~~i 455 (734)
T KOG1061|consen 424 -----VVAILCENLDSLQEPEAKAALIWILGEYAERI 455 (734)
T ss_pred -----hhhhhcccccccCChHHHHHHHHHHhhhhhcc
Confidence 33444444444 56777777777777776543
No 81
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.58 E-value=3.5e-06 Score=82.34 Aligned_cols=311 Identities=15% Similarity=0.164 Sum_probs=183.0
Q ss_pred HHHHHhhcC--CCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhH
Q 014945 74 PAMVAGVWS--DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 151 (415)
Q Consensus 74 ~~l~~~l~~--~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~ 151 (415)
...++.|.. .|.+++..|+.++..++..-. +..... -...++.|++-+.. +-.|..|+++++.|+...-....
T Consensus 571 ~~tl~rL~a~d~DqeVkeraIscmgq~i~~fg-D~l~~e-L~~~L~il~eRl~n---EiTRl~AvkAlt~Ia~S~l~i~l 645 (1233)
T KOG1824|consen 571 DCTLQRLKATDSDQEVKERAISCMGQIIANFG-DFLGNE-LPRTLPILLERLGN---EITRLTAVKALTLIAMSPLDIDL 645 (1233)
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHHHHHHh-hhhhhh-hHHHHHHHHHHHhc---hhHHHHHHHHHHHHHhccceeeh
Confidence 334455554 467888888888877765331 111111 11245555555543 66799999999999986443332
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCch-hHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhC
Q 014945 152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK-CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 230 (415)
Q Consensus 152 ~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~-~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~ 230 (415)
.-+-..+++.+..++......++...+.++-.+...... .....++ -++..+..++ ..++..+...+..++..+...
T Consensus 646 ~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e-~vL~el~~Li-sesdlhvt~~a~~~L~tl~~~ 723 (1233)
T KOG1824|consen 646 SPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLE-AVLVELPPLI-SESDLHVTQLAVAFLTTLAII 723 (1233)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHH-HHHHHhhhhh-hHHHHHHHHHHHHHHHHHHhc
Confidence 222235688888888877777777777776666532111 1111111 1344555555 667778888999999999988
Q ss_pred CCCCchhhhhchHHHHHHhhcCCCh--hHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCCh-----hhHHHH
Q 014945 231 KPQPLFEQTRPALPALERLIHSNDD--EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSP-----SVLIPA 303 (415)
Q Consensus 231 ~~~~~~~~~~~~l~~l~~lL~~~d~--~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~-----~v~~~a 303 (415)
.|.........+++.++.+++++-- .....++..+.-+........ + +..++.++..+-. .+...|
T Consensus 724 ~ps~l~~~~~~iL~~ii~ll~Spllqg~al~~~l~~f~alV~t~~~~l------~-y~~l~s~lt~PV~~~~~~~l~kqa 796 (1233)
T KOG1824|consen 724 QPSSLLKISNPILDEIIRLLRSPLLQGGALSALLLFFQALVITKEPDL------D-YISLLSLLTAPVYEQVTDGLHKQA 796 (1233)
T ss_pred ccHHHHHHhhhhHHHHHHHhhCccccchHHHHHHHHHHHHHhcCCCCc------c-HHHHHHHHcCCcccccccchhHHH
Confidence 7766666667889999999987632 222222222222222211111 1 3445555543311 123333
Q ss_pred ----HHHHHHhhcCChHHHHHHHHCCChHHH-HHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhc
Q 014945 304 ----LRTVGNIVTGDDMQTQCIINHQALPCL-LDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL 378 (415)
Q Consensus 304 ----~~~l~nl~~~~~~~~~~~~~~~~l~~L-~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~ 378 (415)
..|.+.++...++... .....+ ..+.+...+..++..|...++.+..+... .-..++...+++.+.
T Consensus 797 ~~siA~cvA~Lt~~~~~~s~-----s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~----s~~~e~~~~iieaf~ 867 (1233)
T KOG1824|consen 797 YYSIAKCVAALTCACPQKSK-----SLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDL----SPQNELKDTIIEAFN 867 (1233)
T ss_pred HHHHHHHHHHHHHhccccch-----hHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCC----CcchhhHHHHHHHcC
Confidence 3344444433331111 122233 34444444678888999999999874111 112335557888899
Q ss_pred cCCHHHHHHHHHHHHHHhCCCCHHHHHHH
Q 014945 379 NAEFEIKKEAAWAISNATSGGSNEQIKYK 407 (415)
Q Consensus 379 ~~~~~v~~~a~~aL~nl~~~~~~~~~~~l 407 (415)
+++.+|+.+|.+||++++.+.-+..++++
T Consensus 868 sp~edvksAAs~ALGsl~vgnl~~yLpfi 896 (1233)
T KOG1824|consen 868 SPSEDVKSAASYALGSLAVGNLPKYLPFI 896 (1233)
T ss_pred CChHHHHHHHHHHhhhhhcCchHhHHHHH
Confidence 99999999999999999998777777666
No 82
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=6.3e-05 Score=74.74 Aligned_cols=313 Identities=16% Similarity=0.170 Sum_probs=203.2
Q ss_pred HHHHHHHHHHHHhccCCCCchhH-----HHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHH
Q 014945 87 IQLDATTQFRKLLSIERSPPINE-----VIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPI 161 (415)
Q Consensus 87 ~~~~a~~~l~~l~~~~~~~~~~~-----~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~ 161 (415)
-...++.+|+++++.. +.... ..--|.++.+..++.....+.++..|+.++..+.. +.++...+...|.+..
T Consensus 1741 ~v~m~LtAL~Nli~~n--PdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Ta-n~~Cv~~~a~~~vL~~ 1817 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSAN--PDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATA-NKECVTDLATCNVLTT 1817 (2235)
T ss_pred HHHHHHHHHHHHHhhC--cchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhc-ccHHHHHHHhhhHHHH
Confidence 4556899999998764 32222 22346788888888875548999999999987777 4888889999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCC-CCCc-hhhh
Q 014945 162 FVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPL-FEQT 239 (415)
Q Consensus 162 L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~-~~~~-~~~~ 239 (415)
|+.+|.+ -+..++.++.+|..++.... ......+.|++..+..++..+++...+..++..+..+...+ ..+. ....
T Consensus 1818 LL~lLHS-~PS~R~~vL~vLYAL~S~~~-i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL 1895 (2235)
T KOG1789|consen 1818 LLTLLHS-QPSMRARVLDVLYALSSNGQ-IGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITL 1895 (2235)
T ss_pred HHHHHhc-ChHHHHHHHHHHHHHhcCcH-HHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeeh
Confidence 9999976 46789999999999987765 55677889999999999988888999999999999998876 2221 1111
Q ss_pred hchH------------HHHHHhhcC--CChhH------HHHHHHHHHHhcc--------C------ChHH----------
Q 014945 240 RPAL------------PALERLIHS--NDDEV------LTDACWALSYLSD--------G------TNDK---------- 275 (415)
Q Consensus 240 ~~~l------------~~l~~lL~~--~d~~v------~~~a~~~l~~l~~--------~------~~~~---------- 275 (415)
..++ +..+++++. .++++ +...-..+..+.. + -++.
T Consensus 1896 ~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E 1975 (2235)
T KOG1789|consen 1896 IKFLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKE 1975 (2235)
T ss_pred HHhchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccC
Confidence 2222 234444432 22221 1111222222211 0 0000
Q ss_pred --------HHHH------------HHcCcHHHHHHhcCCCCh--hhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHH
Q 014945 276 --------IQAV------------IEAGVCPRLVELLRHPSP--SVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDL 333 (415)
Q Consensus 276 --------~~~~------------~~~~~i~~L~~lL~~~~~--~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~l 333 (415)
...+ +-.+.++.+.+++..+++ ........++-.+....+...+.+-..|.+|.++..
T Consensus 1976 ~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~A 2055 (2235)
T KOG1789|consen 1976 CAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTA 2055 (2235)
T ss_pred cccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHH
Confidence 0001 112445556666654432 222223334444555566666666677999999999
Q ss_pred hcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCHHHHHHH
Q 014945 334 LTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKYK 407 (415)
Q Consensus 334 l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l 407 (415)
+... +..+-+.|..+|..++.+ .-+.+.+.....+..++..|.. .+....-|+.+|..+......+.+...
T Consensus 2056 m~~~-n~s~P~SaiRVlH~Lsen-~~C~~AMA~l~~i~~~m~~mkK-~~~~~GLA~EalkR~~~r~~~eLVAQ~ 2126 (2235)
T KOG1789|consen 2056 MCLQ-NTSAPRSAIRVLHELSEN-QFCCDAMAQLPCIDGIMKSMKK-QPSLMGLAAEALKRLMKRNTGELVAQM 2126 (2235)
T ss_pred HHhc-CCcCcHHHHHHHHHHhhc-cHHHHHHhccccchhhHHHHHh-cchHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 9887 777778899999988874 4556666665566667777663 344555788888888776554444333
No 83
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=0.00027 Score=61.58 Aligned_cols=323 Identities=14% Similarity=0.151 Sum_probs=217.7
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCc---hhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchh
Q 014945 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPP---INEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN 149 (415)
Q Consensus 73 i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~---~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~ 149 (415)
.|.|-..|..+|..++..++..+..++...+... +..++..|+++.++.++-.++ .++-..|...+..++.. +..
T Consensus 84 mpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgged-deVAkAAiesikrialf-paa 161 (524)
T KOG4413|consen 84 MPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGED-DEVAKAAIESIKRIALF-PAA 161 (524)
T ss_pred hHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCc-HHHHHHHHHHHHHHHhc-HHH
Confidence 3556667778888899989988887775432112 233558899999999999988 89999999999999985 777
Q ss_pred hHHHHhCCChHHH--HHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHh
Q 014945 150 TRVVIDHGAVPIF--VRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNF 227 (415)
Q Consensus 150 ~~~~~~~g~i~~L--~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l 227 (415)
.+.++++...+.+ .++.-..+.-.+..++..+..|.+-++.....+..+|.+..|..-+....+.-++.+++.....|
T Consensus 162 leaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteL 241 (524)
T KOG4413|consen 162 LEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTEL 241 (524)
T ss_pred HHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHH
Confidence 7777777666543 22333456667778889999999999888888999999999988885557888999999999999
Q ss_pred hhCCCCCchhhhhchHHHHHHhhcCC--ChhHHHHHHHHHHHhccCChH---HHHHHHHc--CcHHHHHHhcCCCChhhH
Q 014945 228 CRGKPQPLFEQTRPALPALERLIHSN--DDEVLTDACWALSYLSDGTND---KIQAVIEA--GVCPRLVELLRHPSPSVL 300 (415)
Q Consensus 228 ~~~~~~~~~~~~~~~l~~l~~lL~~~--d~~v~~~a~~~l~~l~~~~~~---~~~~~~~~--~~i~~L~~lL~~~~~~v~ 300 (415)
........+....+++..+...+.-. +|--.-.++...+.+.....- .-+.+++. -+++...+.....+++.+
T Consensus 242 aeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdai 321 (524)
T KOG4413|consen 242 AETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAI 321 (524)
T ss_pred HHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHH
Confidence 98776677777788888888777533 443333344444443321100 00111111 234455566677889999
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHCCC--hHHHHHHhcCCCccchHHHHHHHHHHHhcC---CHHHHH----------HHH
Q 014945 301 IPALRTVGNIVTGDDMQTQCIINHQA--LPCLLDLLTQNYKKSIKKEACWTISNITAG---NVNQIQ----------AII 365 (415)
Q Consensus 301 ~~a~~~l~nl~~~~~~~~~~~~~~~~--l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~---~~~~~~----------~l~ 365 (415)
..|+.++|.+.+... ..+.+...|- ...++.-.-+.....-+..+..+|.+|+.. .++++. .+.
T Consensus 322 eaAiDalGilGSnte-GadlllkTgppaaehllarafdqnahakqeaaihaLaaIagelrlkpeqitDgkaeerlrclif 400 (524)
T KOG4413|consen 322 EAAIDALGILGSNTE-GADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIF 400 (524)
T ss_pred HHHHHHHHhccCCcc-hhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHH
Confidence 999999999987654 5555555442 333433333331333456677888888862 333321 111
Q ss_pred Hc-------CCHHHHHHHhccCCHHHHHHHHHHHHHHhCC
Q 014945 366 EA-------GIIGPLVNLLLNAEFEIKKEAAWAISNATSG 398 (415)
Q Consensus 366 ~~-------~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~ 398 (415)
++ .-...+..+++.+.++++..+...+.-++..
T Consensus 401 daaaqstkldPleLFlgilqQpfpEihcAalktfTAiaaq 440 (524)
T KOG4413|consen 401 DAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIAAQ 440 (524)
T ss_pred HHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHcC
Confidence 11 2245566677778899999998888877743
No 84
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.54 E-value=2.3e-07 Score=56.01 Aligned_cols=41 Identities=46% Similarity=0.690 Sum_probs=38.4
Q ss_pred CHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhC
Q 014945 357 NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 397 (415)
Q Consensus 357 ~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~ 397 (415)
++++++.+++.|++|.|+++|.+++++++++|+|+|+|++.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 47889999999999999999999999999999999999973
No 85
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.54 E-value=4.7e-05 Score=73.47 Aligned_cols=306 Identities=16% Similarity=0.187 Sum_probs=201.3
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhh
Q 014945 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 150 (415)
Q Consensus 71 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~ 150 (415)
+-++.+++.....|.+.+..+-..+.+.+... +... .+.++.+++=..+++ +.+|.-|++.++.+-.+ ...
T Consensus 49 slF~dvvk~~~T~dlelKKlvyLYl~nYa~~~---P~~a---~~avnt~~kD~~d~n-p~iR~lAlrtm~~l~v~--~i~ 119 (734)
T KOG1061|consen 49 SLFPDVVKCMQTRDLELKKLVYLYLMNYAKGK---PDLA---ILAVNTFLKDCEDPN-PLIRALALRTMGCLRVD--KIT 119 (734)
T ss_pred hhhHHHHhhcccCCchHHHHHHHHHHHhhccC---chHH---HhhhhhhhccCCCCC-HHHHHHHhhceeeEeeh--HHH
Confidence 35688999999999888888888888887543 2222 235778888888888 99999998888766552 222
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhC
Q 014945 151 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 230 (415)
Q Consensus 151 ~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~ 230 (415)
.. +...+...+++.++.++..+.-+..++-..++ +.+...|.++.|-.++ .+.++.+..+|+.++..+...
T Consensus 120 ey-----~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~---~~~~~~gl~~~L~~ll-~D~~p~VVAnAlaaL~eI~e~ 190 (734)
T KOG1061|consen 120 EY-----LCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDP---DLVEDSGLVDALKDLL-SDSNPMVVANALAALSEIHES 190 (734)
T ss_pred HH-----HHHHHHHhccCCChhHHHHHHHHHHHhhcCCh---hhccccchhHHHHHHh-cCCCchHHHHHHHHHHHHHHh
Confidence 22 46788999999999999999999999976665 5778889999999999 688999999999999999988
Q ss_pred CCC-CchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHH
Q 014945 231 KPQ-PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 309 (415)
Q Consensus 231 ~~~-~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~n 309 (415)
.+. .........+..++..+..-++.-+...+.++.+-...++...+ .++.++...|.+.+..+...+...+-+
T Consensus 191 ~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~ea~-----~i~~r~~p~Lqh~n~avvlsavKv~l~ 265 (734)
T KOG1061|consen 191 HPSVNLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDSREAE-----DICERLTPRLQHANSAVVLSAVKVILQ 265 (734)
T ss_pred CCCCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchhHH-----HHHHHhhhhhccCCcceEeehHHHHHH
Confidence 753 34444455556666666555666666666666665544442222 246778888888887777777777776
Q ss_pred hhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHH-------------------------HH
Q 014945 310 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQ-------------------------AI 364 (415)
Q Consensus 310 l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~-------------------------~l 364 (415)
.....+.... .+-...-+.++.++.+. . .+.-.|..-+.-+....|+... .+
T Consensus 266 ~~~~~~~~~~-~~~~K~~~pl~tlls~~-~-e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~l 342 (734)
T KOG1061|consen 266 LVKYLKQVNE-LLFKKVAPPLVTLLSSE-S-EIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIEL 342 (734)
T ss_pred HHHHHHHHHH-HHHHHhcccceeeeccc-c-hhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHH
Confidence 6654443222 22224445555555444 2 3332222222222222222110 00
Q ss_pred H-HcC---CHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCHH
Q 014945 365 I-EAG---IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNE 402 (415)
Q Consensus 365 ~-~~~---~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~ 402 (415)
. +.+ ++..+......-|.+...+|.+|+++++......
T Consensus 343 a~~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~ 384 (734)
T KOG1061|consen 343 ANDANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS 384 (734)
T ss_pred hhHhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh
Confidence 0 011 3444444445578888899999999999765443
No 86
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.54 E-value=2.1e-05 Score=72.90 Aligned_cols=303 Identities=13% Similarity=0.167 Sum_probs=194.9
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHH-hcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCC---Cchh
Q 014945 74 PAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVI-QSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASG---TSEN 149 (415)
Q Consensus 74 ~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~---~~~~ 149 (415)
|.+-+.+.-.++..+...+..+..+-+. |..+.+- -..+++-|.++|++++ ++++..+=.++.++... +|..
T Consensus 170 pLL~eriy~~n~~tR~flv~Wl~~Lds~---P~~~m~~yl~~~ldGLf~~LsD~s-~eVr~~~~t~l~~fL~eI~s~P~s 245 (675)
T KOG0212|consen 170 PLLRERIYVINPMTRQFLVSWLYVLDSV---PDLEMISYLPSLLDGLFNMLSDSS-DEVRTLTDTLLSEFLAEIRSSPSS 245 (675)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHhcC---CcHHHHhcchHHHHHHHHHhcCCc-HHHHHHHHHHHHHHHHHHhcCccc
Confidence 3344444467888888888777777543 3333322 2346788889999988 89987766655543321 2322
Q ss_pred hHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHH---HHHHH
Q 014945 150 TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNAT---WTLSN 226 (415)
Q Consensus 150 ~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~---~~l~~ 226 (415)
. --...++.++.-+.++++.++..|+.-+..+..-.+. .-...-.|++..++.++.++....+...+. ..+..
T Consensus 246 ~---d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~-~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~ 321 (675)
T KOG0212|consen 246 M---DYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGR-DLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLK 321 (675)
T ss_pred c---CcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCc-chhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHH
Confidence 1 1124688899999999999999998777777654442 123444566777777773333222332222 23444
Q ss_pred hhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHH
Q 014945 227 FCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 306 (415)
Q Consensus 227 l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~ 306 (415)
++.............++..+.+.+.++..+.+..++.-+..+-...+...- .....+.+.|+.-|++++..+...++..
T Consensus 322 l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~-~h~~~if~tLL~tLsd~sd~vvl~~L~l 400 (675)
T KOG0212|consen 322 LVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLL-VHNDSIFLTLLKTLSDRSDEVVLLALSL 400 (675)
T ss_pred HHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhh-hhccHHHHHHHHhhcCchhHHHHHHHHH
Confidence 444332222244467889999999999999998888777777655554432 3445788999999999999999999999
Q ss_pred HHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhc-CCHHHHHHHHHcCCHHHHHHHhcc-CCHHH
Q 014945 307 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA-GNVNQIQAIIEAGIIGPLVNLLLN-AEFEI 384 (415)
Q Consensus 307 l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~-~~~~~~~~l~~~~~i~~L~~~l~~-~~~~v 384 (415)
++++|...... . . -.++..|+++.... ..-+...+..++..+|. -+++.+ +..+..+|.. ++.+.
T Consensus 401 la~i~~s~~~~-~-~--~~fl~sLL~~f~e~-~~~l~~Rg~lIIRqlC~lL~aE~I--------Yr~~a~ILe~e~nl~F 467 (675)
T KOG0212|consen 401 LASICSSSNSP-N-L--RKFLLSLLEMFKED-TKLLEVRGNLIIRQLCLLLNAERI--------YRSIADILEREENLKF 467 (675)
T ss_pred HHHHhcCcccc-c-H--HHHHHHHHHHHhhh-hHHHHhhhhHHHHHHHHHhCHHHH--------HHHHHHHHhccccchH
Confidence 99999865532 0 0 12344455555555 66677888888888886 456654 3444455543 44566
Q ss_pred HHHHHHHHHHHhCC
Q 014945 385 KKEAAWAISNATSG 398 (415)
Q Consensus 385 ~~~a~~aL~nl~~~ 398 (415)
......+|..+.-.
T Consensus 468 AstMV~~Ln~iLlT 481 (675)
T KOG0212|consen 468 ASTMVQALNTILLT 481 (675)
T ss_pred HHHHHHHHHhhhcc
Confidence 66666676666544
No 87
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=4.8e-05 Score=75.54 Aligned_cols=303 Identities=12% Similarity=0.178 Sum_probs=199.8
Q ss_pred hhccHHHHHHhhcC-CCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCc
Q 014945 69 KLESLPAMVAGVWS-DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTS 147 (415)
Q Consensus 69 ~~~~i~~l~~~l~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~ 147 (415)
.++.++-+...+.+ .++.++..|+..+..+.+. .+....+...|++..|+.+|.+. |..+..++.+|..+++. +
T Consensus 1769 lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan--~~Cv~~~a~~~vL~~LL~lLHS~--PS~R~~vL~vLYAL~S~-~ 1843 (2235)
T KOG1789|consen 1769 LIGNFPLLITYLRCRKHPKLQILALQVILLATAN--KECVTDLATCNVLTTLLTLLHSQ--PSMRARVLDVLYALSSN-G 1843 (2235)
T ss_pred hhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcc--cHHHHHHHhhhHHHHHHHHHhcC--hHHHHHHHHHHHHHhcC-c
Confidence 34677778888874 7889999999998887553 57778899999999999999875 68999999999999985 6
Q ss_pred hhhHHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhcCCC---chhHHHHHh----------cCChHHHHHHhccc-h
Q 014945 148 ENTRVVIDHGAVPIFVRLLS-SPTDDVREQAVWALGNVAGDS---PKCRDLVLS----------NGALMPLLAQFNEH-A 212 (415)
Q Consensus 148 ~~~~~~~~~g~i~~L~~ll~-~~~~~v~~~a~~~L~nl~~~~---~~~~~~~~~----------~g~i~~L~~~l~~~-~ 212 (415)
+......+.|++..+..++. +.++..+.+++..++.+..+. |..+-.++. ...-+..+.++... .
T Consensus 1844 ~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~E 1923 (2235)
T KOG1789|consen 1844 QIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSPEAAVHMFESTSE 1923 (2235)
T ss_pred HHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcCHHHHHHHHhccCC
Confidence 66666677787777777554 567889999999999997543 222211111 00113334444211 1
Q ss_pred hHhH------HHHHHHHHHHhh----hCC---CCC--------------------------------------chhhhhc
Q 014945 213 KLSM------LRNATWTLSNFC----RGK---PQP--------------------------------------LFEQTRP 241 (415)
Q Consensus 213 ~~~~------~~~a~~~l~~l~----~~~---~~~--------------------------------------~~~~~~~ 241 (415)
++++ +......+..+. +.. +.. +..+..+
T Consensus 1924 nPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~ 2003 (2235)
T KOG1789|consen 1924 NPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLTE 2003 (2235)
T ss_pred CcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHHH
Confidence 2221 222222222221 111 100 0112344
Q ss_pred hHHHHHHhhcCCCh--hHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHH
Q 014945 242 ALPALERLIHSNDD--EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQ 319 (415)
Q Consensus 242 ~l~~l~~lL~~~d~--~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~ 319 (415)
++..+.+++..+++ +...-...++..|....+...+.+-..|.+|.++..+...+..+-..|+++|..++...- ..+
T Consensus 2004 LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lsen~~-C~~ 2082 (2235)
T KOG1789|consen 2004 LLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSENQF-CCD 2082 (2235)
T ss_pred HHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhcCCcCcHHHHHHHHHHhhccH-HHH
Confidence 55555666654432 222233334444555555555556666999999999988888888999999999987543 566
Q ss_pred HHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhc-CCHHHHHHHHHcCCHHHHHHHhcc
Q 014945 320 CIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA-GNVNQIQAIIEAGIIGPLVNLLLN 379 (415)
Q Consensus 320 ~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~-~~~~~~~~l~~~~~i~~L~~~l~~ 379 (415)
.+.....+..+++.+... +....-|+.+|-.+.. ...+-+.+.++.|++|.|+.+|+.
T Consensus 2083 AMA~l~~i~~~m~~mkK~--~~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpyLL~LLd~ 2141 (2235)
T KOG1789|consen 2083 AMAQLPCIDGIMKSMKKQ--PSLMGLAAEALKRLMKRNTGELVAQMLKCGLVPYLLQLLDS 2141 (2235)
T ss_pred HHhccccchhhHHHHHhc--chHHHHHHHHHHHHHHHhHHHHHHHHhccCcHHHHHHHhcc
Confidence 666666777788877654 4556688889988886 456667778889999999999975
No 88
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=98.45 E-value=7.1e-05 Score=71.01 Aligned_cols=256 Identities=16% Similarity=0.132 Sum_probs=170.1
Q ss_pred CchhHHHhcCchHHHHHhh---------cCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCCC-----C
Q 014945 105 PPINEVIQSGVVPRFIEFL---------SRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSP-----T 170 (415)
Q Consensus 105 ~~~~~~~~~g~i~~L~~ll---------~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-----~ 170 (415)
...+.+....++..|.++- ....++.+..+|++||+|+...++..+..+.+.|..+.++..|+.. +
T Consensus 13 ~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~ 92 (446)
T PF10165_consen 13 TGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQP 92 (446)
T ss_pred ccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCC
Confidence 3444455555566666655 2233389999999999999999999999999999999999999875 6
Q ss_pred HHHHHHHHHHHHHhcCCCchhHHHHHhc-CChHHHHHHhcc---------c-------hhHhHHHHHHHHHHHhhhCCCC
Q 014945 171 DDVREQAVWALGNVAGDSPKCRDLVLSN-GALMPLLAQFNE---------H-------AKLSMLRNATWTLSNFCRGKPQ 233 (415)
Q Consensus 171 ~~v~~~a~~~L~nl~~~~~~~~~~~~~~-g~i~~L~~~l~~---------~-------~~~~~~~~a~~~l~~l~~~~~~ 233 (415)
.++.-...+.|--++...+..+..+.+. +++..++..|.. . .+......++.++.|+....+.
T Consensus 93 ~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~ 172 (446)
T PF10165_consen 93 SDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPK 172 (446)
T ss_pred hhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCc
Confidence 7777788888888887777677666554 677777665521 0 2445677888888999877644
Q ss_pred Cch----hhhhchHHHHHHhh---cC--CChhHHHHHHHHHHHhccCChHHH-----------HHHHHcCcHHHHHHhcC
Q 014945 234 PLF----EQTRPALPALERLI---HS--NDDEVLTDACWALSYLSDGTNDKI-----------QAVIEAGVCPRLVELLR 293 (415)
Q Consensus 234 ~~~----~~~~~~l~~l~~lL---~~--~d~~v~~~a~~~l~~l~~~~~~~~-----------~~~~~~~~i~~L~~lL~ 293 (415)
... .....+++.+..++ .. +.......++.+|.++--...... ........+..|+.+|.
T Consensus 173 ~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld 252 (446)
T PF10165_consen 173 SVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLD 252 (446)
T ss_pred ccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHH
Confidence 332 22344455555552 11 124566777777777732111110 00111234666777763
Q ss_pred C-----C---ChhhHHHHHHHHHHhhcCChHHHHHHHH----------------CCChHHHHHHhcCCCccchHHHHHHH
Q 014945 294 H-----P---SPSVLIPALRTVGNIVTGDDMQTQCIIN----------------HQALPCLLDLLTQNYKKSIKKEACWT 349 (415)
Q Consensus 294 ~-----~---~~~v~~~a~~~l~nl~~~~~~~~~~~~~----------------~~~l~~L~~ll~~~~~~~v~~~a~~~ 349 (415)
. . -.....+.+.+|.+++......++.+.. ..+-..|++++.++ .+.+|..++..
T Consensus 253 ~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~-~~~~k~~vael 331 (446)
T PF10165_consen 253 KRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSP-DPQLKDAVAEL 331 (446)
T ss_pred HHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCC-CchHHHHHHHH
Confidence 1 1 1357788999999999877655544432 24567899999999 69999999999
Q ss_pred HHHHhcCCHHHH
Q 014945 350 ISNITAGNVNQI 361 (415)
Q Consensus 350 l~nl~~~~~~~~ 361 (415)
+..+|..+....
T Consensus 332 lf~Lc~~d~~~~ 343 (446)
T PF10165_consen 332 LFVLCKEDASRF 343 (446)
T ss_pred HHHHHhhhHHHH
Confidence 999987655433
No 89
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.45 E-value=1.8e-05 Score=68.30 Aligned_cols=261 Identities=16% Similarity=0.142 Sum_probs=166.7
Q ss_pred HhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHh-CCChHHHHHhhCC--CCHHHHHHHHHHHHHhcCCCchhHHHHHh
Q 014945 121 EFLSRDDFPQLQFEAAWALTNIASGTSENTRVVID-HGAVPIFVRLLSS--PTDDVREQAVWALGNVAGDSPKCRDLVLS 197 (415)
Q Consensus 121 ~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~-~g~i~~L~~ll~~--~~~~v~~~a~~~L~nl~~~~~~~~~~~~~ 197 (415)
++++.-+ +-.+..|+.|+.++... ++.+...-. ...-..+..++++ ...+++-..+.+++.++..+. +.+.+-+
T Consensus 156 kl~Q~i~-~lTrlfav~cl~~l~~~-~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~-~aqdi~K 232 (432)
T COG5231 156 KLSQLID-FLTRLFAVSCLSNLEFD-VEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKE-CAQDIDK 232 (432)
T ss_pred HHHHHHH-HHHHHHHHHHHhhhhhh-HHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHH-HHHHHHH
Confidence 3444444 66899999999999986 777765443 3445567777765 467889999999998876554 3322211
Q ss_pred -cCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchh--hhhchHHHHHHhhc---CCChhHHHHHHHHHHHhccC
Q 014945 198 -NGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFE--QTRPALPALERLIH---SNDDEVLTDACWALSYLSDG 271 (415)
Q Consensus 198 -~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~--~~~~~l~~l~~lL~---~~d~~v~~~a~~~l~~l~~~ 271 (415)
...+.-++.+........+.+-++..+.|++...|..... ...+-+...++.|. ..|++++.+.-.+=..+...
T Consensus 233 ~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~ 312 (432)
T COG5231 233 MDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQN 312 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhh
Confidence 2246667777756668889999999999999854333221 22332333344442 35777777655544444432
Q ss_pred ChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHC--CChHHHHHHhcCCCccc-hHHHHHH
Q 014945 272 TNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINH--QALPCLLDLLTQNYKKS-IKKEACW 348 (415)
Q Consensus 272 ~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~--~~l~~L~~ll~~~~~~~-v~~~a~~ 348 (415)
..... ..+ ..+..|-.-+-+-+|..+..-.|. ...+.+.+. .++..|.++++.. .+. .-.-||.
T Consensus 313 ~k~l~--~fD-~Y~~ELdsg~l~wSp~H~~~dFWs---------~N~d~l~kdny~i~k~L~~~lq~n-~~nt~i~vAc~ 379 (432)
T COG5231 313 TKKLC--IFD-NYLNELDSGRLEWSPYHHKKDFWS---------TNLDMLIKDNYEIVKVLKKYLQSN-NPNTWICVACS 379 (432)
T ss_pred hhhhh--HHH-HHHHHHhhCcccCCCcccccCchh---------hhHHHHhhhhHHHHHHHHHHHhcC-CCCceEeeeHh
Confidence 22110 010 112222222222333333333321 122333322 5678899999988 555 6677888
Q ss_pred HHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhC
Q 014945 349 TISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 397 (415)
Q Consensus 349 ~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~ 397 (415)
-++.+....|+.+..+..-|+=..+++++.++|++|+-+|+.|+..+..
T Consensus 380 Di~~~Vr~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 380 DIFQLVRASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCIS 428 (432)
T ss_pred hHHHHHHhCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence 8999998899999999999999999999999999999999999987763
No 90
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.44 E-value=0.00023 Score=68.79 Aligned_cols=261 Identities=18% Similarity=0.181 Sum_probs=161.9
Q ss_pred HhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCC
Q 014945 121 EFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGA 200 (415)
Q Consensus 121 ~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~ 200 (415)
++..+.. +-+|..|+.++-.+=+-.++....+ +..+-.+|.+.++.|.-.|+.++-.+|-+.- +.+ ++.
T Consensus 150 ~~~~D~s-~yVRk~AA~AIpKLYsLd~e~k~qL-----~e~I~~LLaD~splVvgsAv~AF~evCPerl---dLI--Hkn 218 (968)
T KOG1060|consen 150 KAVTDPS-PYVRKTAAHAIPKLYSLDPEQKDQL-----EEVIKKLLADRSPLVVGSAVMAFEEVCPERL---DLI--HKN 218 (968)
T ss_pred HHhcCCc-HHHHHHHHHhhHHHhcCChhhHHHH-----HHHHHHHhcCCCCcchhHHHHHHHHhchhHH---HHh--hHH
Confidence 3444555 6777777777777766666665543 3445556777778888888888777764432 232 235
Q ss_pred hHHHHHHhccchhHhHHHHHHHHHHHhhhCC-CCCc----------------------------hhhhhchHHHHHHhhc
Q 014945 201 LMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPL----------------------------FEQTRPALPALERLIH 251 (415)
Q Consensus 201 i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~-~~~~----------------------------~~~~~~~l~~l~~lL~ 251 (415)
...+.++| .+-+.--+..++..|...++.. +.+. ..-..-++...-.+|+
T Consensus 219 yrklC~ll-~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~ 297 (968)
T KOG1060|consen 219 YRKLCRLL-PDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQ 297 (968)
T ss_pred HHHHHhhc-cchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHh
Confidence 66677776 4444444555555665556554 2220 0111334556667788
Q ss_pred CCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHH--------------
Q 014945 252 SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQ-------------- 317 (415)
Q Consensus 252 ~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~-------------- 317 (415)
+.++.|...++.++.+++...+. .+++..|+.+|.+.. .++.-.+..++.++...+..
T Consensus 298 S~n~sVVmA~aql~y~lAP~~~~-------~~i~kaLvrLLrs~~-~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssD 369 (968)
T KOG1060|consen 298 SRNPSVVMAVAQLFYHLAPKNQV-------TKIAKALVRLLRSNR-EVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSD 369 (968)
T ss_pred cCCcHHHHHHHhHHHhhCCHHHH-------HHHHHHHHHHHhcCC-cchhhhHHHHHHHHhcchhhhhhhhhceEeecCC
Confidence 89999999999999999854421 234677777775433 34555555555555332211
Q ss_pred ---HH--------HHHHC----CChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCH
Q 014945 318 ---TQ--------CIINH----QALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEF 382 (415)
Q Consensus 318 ---~~--------~~~~~----~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~ 382 (415)
+. .+.+. .+++-+...+.+. +..+...+..+|+.++........ ..+.-|+.++.+.+.
T Consensus 370 p~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~-d~~faa~aV~AiGrCA~~~~sv~~-----tCL~gLv~Llsshde 443 (968)
T KOG1060|consen 370 PTQVKILKLEILSNLANESNISEILRELQTYIKSS-DRSFAAAAVKAIGRCASRIGSVTD-----TCLNGLVQLLSSHDE 443 (968)
T ss_pred HHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHhhCchhh-----HHHHHHHHHHhcccc
Confidence 10 00111 2344455566666 557888888888888864222222 257788999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHH
Q 014945 383 EIKKEAAWAISNATSGGSNEQIKYK 407 (415)
Q Consensus 383 ~v~~~a~~aL~nl~~~~~~~~~~~l 407 (415)
.|..+|...+..+....+.++.+++
T Consensus 444 ~Vv~eaV~vIk~Llq~~p~~h~~ii 468 (968)
T KOG1060|consen 444 LVVAEAVVVIKRLLQKDPAEHLEIL 468 (968)
T ss_pred hhHHHHHHHHHHHHhhChHHHHHHH
Confidence 9999999999999998888875555
No 91
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=9e-05 Score=64.45 Aligned_cols=319 Identities=14% Similarity=0.125 Sum_probs=203.2
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHH--HHhhcCCCChHHHHHHHHHHHHHhCCCch
Q 014945 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRF--IEFLSRDDFPQLQFEAAWALTNIASGTSE 148 (415)
Q Consensus 71 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L--~~ll~~~~~~~i~~~a~~~L~~l~~~~~~ 148 (415)
+.++.++..+..+|.++-..|...+..+... ......+.++.....+ ..+--..+ .-.|...+..+..+.+-+++
T Consensus 128 eilklildcIggeddeVAkAAiesikrialf--paaleaiFeSellDdlhlrnlaakcn-diaRvRVleLIieifSiSpe 204 (524)
T KOG4413|consen 128 EILKLILDCIGGEDDEVAKAAIESIKRIALF--PAALEAIFESELLDDLHLRNLAAKCN-DIARVRVLELIIEIFSISPE 204 (524)
T ss_pred hHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc--HHHHHHhcccccCChHHHhHHHhhhh-hHHHHHHHHHHHHHHhcCHH
Confidence 4567788888888888888888888888543 2334555565554433 33333334 56788888999999999999
Q ss_pred hhHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccc-hhHhHHHHHHHHHHH
Q 014945 149 NTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEH-AKLSMLRNATWTLSN 226 (415)
Q Consensus 149 ~~~~~~~~g~i~~L~~ll~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~-~~~~~~~~a~~~l~~ 226 (415)
.....-++|.+..|..-+.. .+.-++..++.....++...- .++.+.+.|.++.+.+++... +++--.-.++.....
T Consensus 205 saneckkSGLldlLeaElkGteDtLVianciElvteLaeteH-greflaQeglIdlicnIIsGadsdPfekfralmgfgk 283 (524)
T KOG4413|consen 205 SANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEH-GREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGK 283 (524)
T ss_pred HHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhh-hhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHH
Confidence 99999999999999888876 677888899999999986544 467888889999999988422 233222223333333
Q ss_pred hhhCCC--CCch----hhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCc--HHHHHHhcCCCC-h
Q 014945 227 FCRGKP--QPLF----EQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGV--CPRLVELLRHPS-P 297 (415)
Q Consensus 227 l~~~~~--~~~~----~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~--i~~L~~lL~~~~-~ 297 (415)
+..... .... ....-++....+++..+|++.+..|+.+++.+...... .+.+.+.|- ...++.-..+.+ .
T Consensus 284 ffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteG-adlllkTgppaaehllarafdqnah 362 (524)
T KOG4413|consen 284 FFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEG-ADLLLKTGPPAAEHLLARAFDQNAH 362 (524)
T ss_pred HhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcch-hHHHhccCChHHHHHHHHHhccccc
Confidence 332210 1011 11233455566778889999999999999998765544 355666653 333333333333 3
Q ss_pred hhHHHHHHHHHHhhcCC---hH----------HHHHHHHC-------CChHHHHHHhcCCCccchHHHHHHHHHHHhcCC
Q 014945 298 SVLIPALRTVGNIVTGD---DM----------QTQCIINH-------QALPCLLDLLTQNYKKSIKKEACWTISNITAGN 357 (415)
Q Consensus 298 ~v~~~a~~~l~nl~~~~---~~----------~~~~~~~~-------~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~ 357 (415)
.-+..++++|.+++... ++ .+..+++. .-+..+..+++.+ .++++..+..++..++...
T Consensus 363 akqeaaihaLaaIagelrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilqQp-fpEihcAalktfTAiaaqP 441 (524)
T KOG4413|consen 363 AKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQP-FPEIHCAALKTFTAIAAQP 441 (524)
T ss_pred chHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcCC-ChhhHHHHHHHHHHHHcCc
Confidence 44667888888887532 11 11112221 2345667778888 8999999999999998753
Q ss_pred HHHHHHHHHcCCHHHHHHHhccC---CHHHHHHHHHHHHHH
Q 014945 358 VNQIQAIIEAGIIGPLVNLLLNA---EFEIKKEAAWAISNA 395 (415)
Q Consensus 358 ~~~~~~l~~~~~i~~L~~~l~~~---~~~v~~~a~~aL~nl 395 (415)
-.....+-..|++..+.+.-... .-+.+.++|.|+.+-
T Consensus 442 WalkeifakeefieiVtDastEhaKaakdAkYeccKAiaea 482 (524)
T KOG4413|consen 442 WALKEIFAKEEFIEIVTDASTEHAKAAKDAKYECCKAIAEA 482 (524)
T ss_pred HHHHHHhcCccceeeecccchhhHHHHHHHHHHHHHHHHHH
Confidence 33222333566666665543221 123455566666553
No 92
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.42 E-value=0.00026 Score=67.65 Aligned_cols=313 Identities=17% Similarity=0.175 Sum_probs=193.7
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHH
Q 014945 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRV 152 (415)
Q Consensus 73 i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~ 152 (415)
--+-+++|.++-...++-+-..+.-++..+ .+..+. ++..+.+=|.+.+ +.....|+.+++|+.+ .+..+.
T Consensus 76 hmEaV~LLss~kysEKqIGYl~is~L~n~n-~dl~kl-----vin~iknDL~srn-~~fv~LAL~~I~niG~--re~~ea 146 (938)
T KOG1077|consen 76 HMEAVNLLSSNKYSEKQIGYLFISLLLNEN-SDLMKL-----VINSIKNDLSSRN-PTFVCLALHCIANIGS--REMAEA 146 (938)
T ss_pred hHHHHHHhhcCCccHHHHhHHHHHHHHhcc-hHHHHH-----HHHHHHhhhhcCC-cHHHHHHHHHHHhhcc--HhHHHH
Confidence 345667777766555555544444444222 222222 2455556666777 8889999999999887 555555
Q ss_pred HHhCCChHHHHHhhCCC--CHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhC
Q 014945 153 VIDHGAVPIFVRLLSSP--TDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 230 (415)
Q Consensus 153 ~~~~g~i~~L~~ll~~~--~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~ 230 (415)
+.. -|+ ++|.++ .+-++..|+-||..|...+|+ .+-..+....++.+| ++.+..+...+...+.-|+..
T Consensus 147 ~~~--DI~---KlLvS~~~~~~vkqkaALclL~L~r~spD---l~~~~~W~~riv~LL-~D~~~gv~ta~~sLi~~lvk~ 217 (938)
T KOG1077|consen 147 FAD--DIP---KLLVSGSSMDYVKQKAALCLLRLFRKSPD---LVNPGEWAQRIVHLL-DDQHMGVVTAATSLIEALVKK 217 (938)
T ss_pred hhh--hhH---HHHhCCcchHHHHHHHHHHHHHHHhcCcc---ccChhhHHHHHHHHh-CccccceeeehHHHHHHHHHc
Confidence 443 244 555553 456888898899888877764 333334678899999 666677777888888888876
Q ss_pred CCCCchhhhhchHHHHHHhhc-------------CCChhHHHHHHHHHHHhccCCh-HHHHHHHHcCcHHHHHHhcCCC-
Q 014945 231 KPQPLFEQTRPALPALERLIH-------------SNDDEVLTDACWALSYLSDGTN-DKIQAVIEAGVCPRLVELLRHP- 295 (415)
Q Consensus 231 ~~~~~~~~~~~~l~~l~~lL~-------------~~d~~v~~~a~~~l~~l~~~~~-~~~~~~~~~~~i~~L~~lL~~~- 295 (415)
.+..........+..|..... -+.|.+...++++|.++-.-.+ .....+ ..+++.++...+.+
T Consensus 218 ~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l--~evl~~iLnk~~~~~ 295 (938)
T KOG1077|consen 218 NPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARL--NEVLERILNKAQEPP 295 (938)
T ss_pred CCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHH--HHHHHHHHhccccCc
Confidence 654433333333333333221 1347788889999988843222 111112 13455555555421
Q ss_pred ---C---hhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCC
Q 014945 296 ---S---PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGI 369 (415)
Q Consensus 296 ---~---~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~ 369 (415)
+ .......+.-.-+++..-|..-+.+. ..+..|-.++.+. +..+|--|.-.++.++... ..++.+...
T Consensus 296 ~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~--~~~~~Lg~fls~r-E~NiRYLaLEsm~~L~ss~-~s~davK~h-- 369 (938)
T KOG1077|consen 296 KSKKVQHSNAKNAVLFEAISLAIHLDSEPELLS--RAVNQLGQFLSHR-ETNIRYLALESMCKLASSE-FSIDAVKKH-- 369 (938)
T ss_pred cccchHhhhhHHHHHHHHHHHHHHcCCcHHHHH--HHHHHHHHHhhcc-cccchhhhHHHHHHHHhcc-chHHHHHHH--
Confidence 1 12333444444455544443333222 3577889999998 9999999999999988742 223333333
Q ss_pred HHHHHHHhc-cCCHHHHHHHHHHHHHHhCCCCHHHH-HHHHHHh
Q 014945 370 IGPLVNLLL-NAEFEIKKEAAWAISNATSGGSNEQI-KYKFFYV 411 (415)
Q Consensus 370 i~~L~~~l~-~~~~~v~~~a~~aL~nl~~~~~~~~~-~~l~~~~ 411 (415)
.+.++..|+ ..|..+|+.|+..|.-++...+..+| ..|+.|+
T Consensus 370 ~d~Ii~sLkterDvSirrravDLLY~mcD~~Nak~IV~elLqYL 413 (938)
T KOG1077|consen 370 QDTIINSLKTERDVSIRRRAVDLLYAMCDVSNAKQIVAELLQYL 413 (938)
T ss_pred HHHHHHHhccccchHHHHHHHHHHHHHhchhhHHHHHHHHHHHH
Confidence 677788888 68899999999999999988776555 5554443
No 93
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.42 E-value=4.7e-07 Score=54.60 Aligned_cols=40 Identities=45% Similarity=0.908 Sum_probs=37.8
Q ss_pred CchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 014945 146 TSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVA 185 (415)
Q Consensus 146 ~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~ 185 (415)
+++++..+++.|++|.|+++|.++++.+++.|+|+|+||+
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 3678899999999999999999999999999999999997
No 94
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=98.41 E-value=5.5e-07 Score=58.43 Aligned_cols=55 Identities=22% Similarity=0.557 Sum_probs=48.6
Q ss_pred cchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHH
Q 014945 340 KSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNA 395 (415)
Q Consensus 340 ~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl 395 (415)
+.+|..|+|+|++++...++........ +++.|+.+|.+++++||..|+|+|+++
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~-~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPE-LLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHH-HHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHH-HHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 4689999999999988888877775554 999999999999999999999999975
No 95
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.39 E-value=7.5e-06 Score=61.47 Aligned_cols=126 Identities=19% Similarity=0.192 Sum_probs=106.3
Q ss_pred hhccHHHHHHhhc-CCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCc
Q 014945 69 KLESLPAMVAGVW-SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTS 147 (415)
Q Consensus 69 ~~~~i~~l~~~l~-~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~ 147 (415)
.++-+..|+...+ ..+.+.+...+.-|.+++-. +-+...+.+.+++..++..|..++ ..+...++..|+|+|.+ +
T Consensus 14 Rl~Ylq~LV~efq~tt~~eakeqv~ANLANFAYD--P~Nys~Lrql~vLdlFvdsl~e~n-e~LvefgIgglCNlC~d-~ 89 (173)
T KOG4646|consen 14 RLEYLQHLVDEFQTTTNIEAKEQVTANLANFAYD--PINYSHLRQLDVLDLFVDSLEEQN-ELLVEFGIGGLCNLCLD-K 89 (173)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccC--cchHHHHHHhhHHHHHHHHhhccc-HHHHHHhHHHHHhhccC-h
Confidence 3456788888777 47788888888888888632 344456778999999999999999 89999999999999996 8
Q ss_pred hhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhc
Q 014945 148 ENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSN 198 (415)
Q Consensus 148 ~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~ 198 (415)
.+...+.+++++|.++..++++...+...++.++..++......|+.+...
T Consensus 90 ~n~~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p 140 (173)
T KOG4646|consen 90 TNAKFIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSP 140 (173)
T ss_pred HHHHHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccH
Confidence 888999999999999999999999999999999999998777777777653
No 96
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.38 E-value=0.00011 Score=68.58 Aligned_cols=209 Identities=19% Similarity=0.091 Sum_probs=153.1
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHH
Q 014945 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRV 152 (415)
Q Consensus 73 i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~ 152 (415)
+..++..|.+.++.++..++..|..+-. ....+.|+.+|++.+ +.++..++.+++....
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg~i~~------------~~a~~~L~~~L~~~~-p~vR~aal~al~~r~~-------- 146 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALGWLGG------------RQAEPWLEPLLAASE-PPGRAIGLAALGAHRH-------- 146 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcCCc------------hHHHHHHHHHhcCCC-hHHHHHHHHHHHhhcc--------
Confidence 7889999999889899999888876521 235688999999888 8999888877766222
Q ss_pred HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCC
Q 014945 153 VIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP 232 (415)
Q Consensus 153 ~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~ 232 (415)
...+.+..+|+++++.++..|+.+|+.+-... .++.|...+ .+.++.++..+++++..+-.
T Consensus 147 ----~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~~-----------a~~~L~~al-~d~~~~VR~aA~~al~~lG~--- 207 (410)
T TIGR02270 147 ----DPGPALEAALTHEDALVRAAALRALGELPRRL-----------SESTLRLYL-RDSDPEVRFAALEAGLLAGS--- 207 (410)
T ss_pred ----ChHHHHHHHhcCCCHHHHHHHHHHHHhhcccc-----------chHHHHHHH-cCCCHHHHHHHHHHHHHcCC---
Confidence 23568889999999999999999999885322 445566666 88999999999999976642
Q ss_pred CCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhc
Q 014945 233 QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT 312 (415)
Q Consensus 233 ~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~ 312 (415)
....+.+..+...........+..++... +.+ .+++.|..++.++. ++..++.++|.+-.
T Consensus 208 -------~~A~~~l~~~~~~~g~~~~~~l~~~lal~--~~~---------~a~~~L~~ll~d~~--vr~~a~~AlG~lg~ 267 (410)
T TIGR02270 208 -------RLAWGVCRRFQVLEGGPHRQRLLVLLAVA--GGP---------DAQAWLRELLQAAA--TRREALRAVGLVGD 267 (410)
T ss_pred -------HhHHHHHHHHHhccCccHHHHHHHHHHhC--Cch---------hHHHHHHHHhcChh--hHHHHHHHHHHcCC
Confidence 13344555544444444443433333333 111 35688888887655 89999999997754
Q ss_pred CChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhc
Q 014945 313 GDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 355 (415)
Q Consensus 313 ~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~ 355 (415)
. ..++.|+..+.+. .++..|..++..|+.
T Consensus 268 p-----------~av~~L~~~l~d~---~~aR~A~eA~~~ItG 296 (410)
T TIGR02270 268 V-----------EAAPWCLEAMREP---PWARLAGEAFSLITG 296 (410)
T ss_pred c-----------chHHHHHHHhcCc---HHHHHHHHHHHHhhC
Confidence 2 4578899998766 499999999999986
No 97
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.36 E-value=7.3e-05 Score=68.87 Aligned_cols=215 Identities=25% Similarity=0.341 Sum_probs=159.5
Q ss_pred CchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHH
Q 014945 114 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRD 193 (415)
Q Consensus 114 g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~ 193 (415)
..++.+.+++.+.+ ..++..+++.++.+... -+++.+..++.+.++.++..|+.+|+.+- .+.
T Consensus 43 ~~~~~~~~~l~~~~-~~vr~~aa~~l~~~~~~-----------~av~~l~~~l~d~~~~vr~~a~~aLg~~~--~~~--- 105 (335)
T COG1413 43 EAADELLKLLEDED-LLVRLSAAVALGELGSE-----------EAVPLLRELLSDEDPRVRDAAADALGELG--DPE--- 105 (335)
T ss_pred hhHHHHHHHHcCCC-HHHHHHHHHHHhhhchH-----------HHHHHHHHHhcCCCHHHHHHHHHHHHccC--Chh---
Confidence 35788999999987 89999999997776542 35899999999999999999999998873 221
Q ss_pred HHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCCh------------hHHHHH
Q 014945 194 LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDD------------EVLTDA 261 (415)
Q Consensus 194 ~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~------------~v~~~a 261 (415)
.++.++..+..+.+..++..+.++|..+-.. ..+..++..+.+... .++..+
T Consensus 106 ------a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~----------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a 169 (335)
T COG1413 106 ------AVPPLVELLENDENEGVRAAAARALGKLGDE----------RALDPLLEALQDEDSGSAAAALDAALLDVRAAA 169 (335)
T ss_pred ------HHHHHHHHHHcCCcHhHHHHHHHHHHhcCch----------hhhHHHHHHhccchhhhhhhhccchHHHHHHHH
Confidence 5788899995578999999999999988654 225556666665442 244444
Q ss_pred HHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccc
Q 014945 262 CWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKS 341 (415)
Q Consensus 262 ~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~ 341 (415)
...++.+- +...++.+...+.+.+..++..+..+++.+.... ..+.+.+...+.+. +..
T Consensus 170 ~~~l~~~~-----------~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~-~~~ 228 (335)
T COG1413 170 AEALGELG-----------DPEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDE-SLE 228 (335)
T ss_pred HHHHHHcC-----------ChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCC-CHH
Confidence 44444432 1234678888898888899999999999998765 24567888899888 999
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHH
Q 014945 342 IKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAIS 393 (415)
Q Consensus 342 v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~ 393 (415)
+|..++.+++.+-.. . ..+.+...+.+.+..++..+..++.
T Consensus 229 vr~~~~~~l~~~~~~--~---------~~~~l~~~l~~~~~~~~~~~~~~~~ 269 (335)
T COG1413 229 VRKAALLALGEIGDE--E---------AVDALAKALEDEDVILALLAAAALG 269 (335)
T ss_pred HHHHHHHHhcccCcc--h---------hHHHHHHHHhccchHHHHHHHHHhc
Confidence 999999999988653 2 2445566666666666555544443
No 98
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.30 E-value=0.00017 Score=69.69 Aligned_cols=251 Identities=12% Similarity=0.139 Sum_probs=166.9
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHH
Q 014945 74 PAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVV 153 (415)
Q Consensus 74 ~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~ 153 (415)
..|..+|+++....+..|..-+..+.... .. -+..+|..++...+.+ .+++...---|...|...++-. +
T Consensus 38 ~dL~~lLdSnkd~~KleAmKRIia~iA~G-~d------vS~~Fp~VVKNVaskn-~EVKkLVyvYLlrYAEeqpdLA--L 107 (968)
T KOG1060|consen 38 DDLKQLLDSNKDSLKLEAMKRIIALIAKG-KD------VSLLFPAVVKNVASKN-IEVKKLVYVYLLRYAEEQPDLA--L 107 (968)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhcC-Cc------HHHHHHHHHHHhhccC-HHHHHHHHHHHHHHhhcCCCce--e
Confidence 57889999999999999998766665433 12 2235799999999998 9999999888888888655432 2
Q ss_pred HhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCC
Q 014945 154 IDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQ 233 (415)
Q Consensus 154 ~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~ 233 (415)
. -|..+-+-|.++|+.+|..|+++|..|=. .++.-=.+-.+-+.. .+..+-++..|+.++-.|-.-.+.
T Consensus 108 L---SIntfQk~L~DpN~LiRasALRvlSsIRv-------p~IaPI~llAIk~~~-~D~s~yVRk~AA~AIpKLYsLd~e 176 (968)
T KOG1060|consen 108 L---SINTFQKALKDPNQLIRASALRVLSSIRV-------PMIAPIMLLAIKKAV-TDPSPYVRKTAAHAIPKLYSLDPE 176 (968)
T ss_pred e---eHHHHHhhhcCCcHHHHHHHHHHHHhcch-------hhHHHHHHHHHHHHh-cCCcHHHHHHHHHhhHHHhcCChh
Confidence 2 37788889999999999999999987621 111100111222222 567888999999999999876543
Q ss_pred CchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcC
Q 014945 234 PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG 313 (415)
Q Consensus 234 ~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~ 313 (415)
.. ..++..+-.+|.+.++.|.-.|+.++-.+|...-+.+. +-..++..+|.+-+..=+...+..|...|..
T Consensus 177 ~k----~qL~e~I~~LLaD~splVvgsAv~AF~evCPerldLIH-----knyrklC~ll~dvdeWgQvvlI~mL~RYAR~ 247 (968)
T KOG1060|consen 177 QK----DQLEEVIKKLLADRSPLVVGSAVMAFEEVCPERLDLIH-----KNYRKLCRLLPDVDEWGQVVLINMLTRYARH 247 (968)
T ss_pred hH----HHHHHHHHHHhcCCCCcchhHHHHHHHHhchhHHHHhh-----HHHHHHHhhccchhhhhHHHHHHHHHHHHHh
Confidence 32 25667777888899999999999999888854433322 3357777777665554555566666655532
Q ss_pred C---hHHHHH----------------------HHHC---CChHHHHHHhcCCCccchHHHHHHHHHHHhc
Q 014945 314 D---DMQTQC----------------------IINH---QALPCLLDLLTQNYKKSIKKEACWTISNITA 355 (415)
Q Consensus 314 ~---~~~~~~----------------------~~~~---~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~ 355 (415)
. +..... ..+. -++...-.++.+. ++.|...+|.+...++-
T Consensus 248 ~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~-n~sVVmA~aql~y~lAP 316 (968)
T KOG1060|consen 248 QLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSR-NPSVVMAVAQLFYHLAP 316 (968)
T ss_pred cCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcC-CcHHHHHHHhHHHhhCC
Confidence 1 000000 0000 0233444566676 77888888877777764
No 99
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.29 E-value=4.2e-05 Score=72.33 Aligned_cols=219 Identities=15% Similarity=0.150 Sum_probs=149.6
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHH---HHHHHHhhhCC---C
Q 014945 159 VPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNA---TWTLSNFCRGK---P 232 (415)
Q Consensus 159 i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a---~~~l~~l~~~~---~ 232 (415)
...++.+..+.+..++.+|+.+|..|..... .... .....+.++ .+.+..++..| +|.++|.+-.+ .
T Consensus 200 ~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~k-L~~~-----~Y~~A~~~l-sD~~e~VR~aAvqlv~v~gn~~p~~~e~e 272 (823)
T KOG2259|consen 200 ARGLIYLEHDQDFRVRTHAVEGLLALSEGFK-LSKA-----CYSRAVKHL-SDDYEDVRKAAVQLVSVWGNRCPAPLERE 272 (823)
T ss_pred HHHHHHHhcCCCcchHHHHHHHHHhhccccc-ccHH-----HHHHHHHHh-cchHHHHHHHHHHHHHHHHhcCCCcccch
Confidence 3347777777888888888888877766322 2222 344567777 77788888777 56666666322 1
Q ss_pred CCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHH--------------------------
Q 014945 233 QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCP-------------------------- 286 (415)
Q Consensus 233 ~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~-------------------------- 286 (415)
.........++..+...+.+-...|+..|..+++.+...+++.++..++..++.
T Consensus 273 ~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~ 352 (823)
T KOG2259|consen 273 SEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKE 352 (823)
T ss_pred hhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCcc
Confidence 222333456677788888888888899999988888776666665555544444
Q ss_pred ------------------------HHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccch
Q 014945 287 ------------------------RLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSI 342 (415)
Q Consensus 287 ------------------------~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v 342 (415)
.++.-|.++-.+|+.+|...++.++...+.... ..++.|+.++++. ...|
T Consensus 353 ~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~-----~aldfLvDMfNDE-~~~V 426 (823)
T KOG2259|consen 353 WNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAV-----RALDFLVDMFNDE-IEVV 426 (823)
T ss_pred ccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHH-----HHHHHHHHHhccH-HHHH
Confidence 233333333345999999999999998775544 4577899999998 9999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHh
Q 014945 343 KKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT 396 (415)
Q Consensus 343 ~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~ 396 (415)
|..|.++|..|+.+ -.++...++.++..|.+.++++|.++-..|++.-
T Consensus 427 RL~ai~aL~~Is~~------l~i~eeql~~il~~L~D~s~dvRe~l~elL~~~~ 474 (823)
T KOG2259|consen 427 RLKAIFALTMISVH------LAIREEQLRQILESLEDRSVDVREALRELLKNAR 474 (823)
T ss_pred HHHHHHHHHHHHHH------heecHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 99999999988864 1122234667777788888888877776666543
No 100
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.29 E-value=8.7e-06 Score=61.14 Aligned_cols=116 Identities=13% Similarity=0.084 Sum_probs=100.7
Q ss_pred cCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhH
Q 014945 113 SGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 192 (415)
Q Consensus 113 ~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~ 192 (415)
.+.+..|+.-.....+.+.+.+..--|.|.+.+ |.+...+.+..+++.++.-|..++..+.+.++..|+|+|-+.. ..
T Consensus 15 l~Ylq~LV~efq~tt~~eakeqv~ANLANFAYD-P~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~-n~ 92 (173)
T KOG4646|consen 15 LEYLQHLVDEFQTTTNIEAKEQVTANLANFAYD-PINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKT-NA 92 (173)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccC-cchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChH-HH
Confidence 345677776666555489999999999999996 8888999999999999999999999999999999999998877 56
Q ss_pred HHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCC
Q 014945 193 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK 231 (415)
Q Consensus 193 ~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~ 231 (415)
..+.+.++++.++..+ .++...+...++.++..++.+.
T Consensus 93 ~~I~ea~g~plii~~l-ssp~e~tv~sa~~~l~~l~~~~ 130 (173)
T KOG4646|consen 93 KFIREALGLPLIIFVL-SSPPEITVHSAALFLQLLEFGE 130 (173)
T ss_pred HHHHHhcCCceEEeec-CCChHHHHHHHHHHHHHhcCcc
Confidence 8899999999999999 7778888899999999998765
No 101
>PF05536 Neurochondrin: Neurochondrin
Probab=98.29 E-value=7.6e-05 Score=72.39 Aligned_cols=235 Identities=19% Similarity=0.166 Sum_probs=160.5
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCc--hhHHHhcCchHHHHHhhcCCC------ChHHHHHHHHHHHHHh
Q 014945 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPP--INEVIQSGVVPRFIEFLSRDD------FPQLQFEAAWALTNIA 143 (415)
Q Consensus 72 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~--~~~~~~~g~i~~L~~ll~~~~------~~~i~~~a~~~L~~l~ 143 (415)
.+...+++|++.+.+.++.++..+.+++...+... .+.+.+.-+.+.+-++|.+.. ....+..|+.+|..++
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~ 85 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC 85 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 57888999999888888889999999987542212 234667767888889998732 1567788888999888
Q ss_pred CCCchhh--HHHHhCCChHHHHHhhCCCCH-HHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHH
Q 014945 144 SGTSENT--RVVIDHGAVPIFVRLLSSPTD-DVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNA 220 (415)
Q Consensus 144 ~~~~~~~--~~~~~~g~i~~L~~ll~~~~~-~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a 220 (415)
.. ++.. ..++ +-||.|+..+.+.+. .+...|+.+|..++ ..+..+..+++.|.++.|...+.+ .+.....+
T Consensus 86 ~~-~~~a~~~~~~--~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~--~~~~~E~A 159 (543)
T PF05536_consen 86 RD-PELASSPQMV--SRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPN--QSFQMEIA 159 (543)
T ss_pred CC-hhhhcCHHHH--HHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHh--CcchHHHH
Confidence 84 4443 2233 569999999987666 99999999999999 555578999999999999999844 55567778
Q ss_pred HHHHHHhhhCCCCC----chhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHH-HHHHHH----cCcHHHHHHh
Q 014945 221 TWTLSNFCRGKPQP----LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDK-IQAVIE----AGVCPRLVEL 291 (415)
Q Consensus 221 ~~~l~~l~~~~~~~----~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~-~~~~~~----~~~i~~L~~l 291 (415)
+.++.+++...... .......+++.+...+..........+|..+..+....+.. ...... ..+...+..+
T Consensus 160 l~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~i 239 (543)
T PF05536_consen 160 LNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDI 239 (543)
T ss_pred HHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHH
Confidence 88888877654321 12223455666666666666666777888888876554211 011111 1233445555
Q ss_pred cCCC-ChhhHHHHHHHHHHhhc
Q 014945 292 LRHP-SPSVLIPALRTVGNIVT 312 (415)
Q Consensus 292 L~~~-~~~v~~~a~~~l~nl~~ 312 (415)
|.+. .+.-|.+++...+.+..
T Consensus 240 L~sr~~~~~R~~al~Laa~Ll~ 261 (543)
T PF05536_consen 240 LQSRLTPSQRDPALNLAASLLD 261 (543)
T ss_pred HhcCCCHHHHHHHHHHHHHHHH
Confidence 5443 45666677776666653
No 102
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.25 E-value=0.0008 Score=64.47 Aligned_cols=301 Identities=12% Similarity=0.100 Sum_probs=182.1
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCC-hHHHHHHHHHHHHHhCCCchhhH
Q 014945 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDF-PQLQFEAAWALTNIASGTSENTR 151 (415)
Q Consensus 73 i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~-~~i~~~a~~~L~~l~~~~~~~~~ 151 (415)
+..+.+-|.|.|+.....|+.++.++-+. +..+.+. .+ ++ ++|-++++ +-++..|+-||..+-..+|+..
T Consensus 113 in~iknDL~srn~~fv~LAL~~I~niG~r---e~~ea~~-~D-I~---KlLvS~~~~~~vkqkaALclL~L~r~spDl~- 183 (938)
T KOG1077|consen 113 INSIKNDLSSRNPTFVCLALHCIANIGSR---EMAEAFA-DD-IP---KLLVSGSSMDYVKQKAALCLLRLFRKSPDLV- 183 (938)
T ss_pred HHHHHhhhhcCCcHHHHHHHHHHHhhccH---hHHHHhh-hh-hH---HHHhCCcchHHHHHHHHHHHHHHHhcCcccc-
Confidence 45556666788888888888888887542 2222222 11 33 55555442 5678889999999988766532
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhcc------------chhHhHHHH
Q 014945 152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE------------HAKLSMLRN 219 (415)
Q Consensus 152 ~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~------------~~~~~~~~~ 219 (415)
-..+-+..++.+|.+.+-.+...+...+.-|+...|+.....+- -.+..|.++... -+.+-++..
T Consensus 184 --~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~-~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vK 260 (938)
T KOG1077|consen 184 --NPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLP-LAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVK 260 (938)
T ss_pred --ChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHH-HHHHHHHHHHhhcccchhhceeecCCChHHHHH
Confidence 22356889999999988888888888888888766543222111 022223222210 123455666
Q ss_pred HHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCC----C---hhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhc
Q 014945 220 ATWTLSNFCRGKPQPLFEQTRPALPALERLIHSN----D---DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL 292 (415)
Q Consensus 220 a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~----d---~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL 292 (415)
++.+|.++-.............++..++...+.+ + .......+.-.-+++.+-+..-+.+. ..+..|-++|
T Consensus 261 l~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~--~~~~~Lg~fl 338 (938)
T KOG1077|consen 261 LLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLS--RAVNQLGQFL 338 (938)
T ss_pred HHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHH--HHHHHHHHHh
Confidence 6666665521111112222234444444433321 1 11222233322333322222212232 4578999999
Q ss_pred CCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHH
Q 014945 293 RHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGP 372 (415)
Q Consensus 293 ~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~ 372 (415)
.+.+..+|-.|+..+..++.... ..+.+-.+ .+.++..|+...|..+|+.|+-.|-.+|.. ++.+. ++..
T Consensus 339 s~rE~NiRYLaLEsm~~L~ss~~-s~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD~--~Nak~-----IV~e 408 (938)
T KOG1077|consen 339 SHRETNIRYLALESMCKLASSEF-SIDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCDV--SNAKQ-----IVAE 408 (938)
T ss_pred hcccccchhhhHHHHHHHHhccc-hHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhch--hhHHH-----HHHH
Confidence 99999999999999999998754 33434443 788899998555999999999999999962 22223 4667
Q ss_pred HHHHhccCCHHHHHHHHHHHHHHhC
Q 014945 373 LVNLLLNAEFEIKKEAAWAISNATS 397 (415)
Q Consensus 373 L~~~l~~~~~~v~~~a~~aL~nl~~ 397 (415)
|++.|...|+.+|++..--+.-+++
T Consensus 409 lLqYL~tAd~sireeivlKvAILaE 433 (938)
T KOG1077|consen 409 LLQYLETADYSIREEIVLKVAILAE 433 (938)
T ss_pred HHHHHhhcchHHHHHHHHHHHHHHH
Confidence 7888888888888776655555543
No 103
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.24 E-value=1.9e-05 Score=68.44 Aligned_cols=187 Identities=16% Similarity=0.129 Sum_probs=118.3
Q ss_pred cCCCHHHHHHHHHHHHHHhccC-CCCchhHHHh--cCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCC
Q 014945 81 WSDDRNIQLDATTQFRKLLSIE-RSPPINEVIQ--SGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHG 157 (415)
Q Consensus 81 ~~~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~--~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g 157 (415)
.+.|...+..|+..|+.++.+. .......+.+ ..+++.+...+.+.. ..+...|+.++..++..-........+ .
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~R-s~v~~~A~~~l~~l~~~l~~~~~~~~~-~ 94 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLR-SKVSKTACQLLSDLARQLGSHFEPYAD-I 94 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH----HHHHHHHHHHHHHHHHGGGGHHHHH-H
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHhHhHHHHHH-H
Confidence 4688999999999999998764 1122223221 145567777777766 788999999999988754444444433 5
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCC--CCc
Q 014945 158 AVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP--QPL 235 (415)
Q Consensus 158 ~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~--~~~ 235 (415)
++|.|+..+.++...+++.|..+|..++...+..... ....+...+ .+.++.++..++..+..+....+ ...
T Consensus 95 ~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~-----~~~~l~~~~-~~Kn~~vR~~~~~~l~~~l~~~~~~~~~ 168 (228)
T PF12348_consen 95 LLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKI-----LLEILSQGL-KSKNPQVREECAEWLAIILEKWGSDSSV 168 (228)
T ss_dssp HHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH-----HHHHHHHHT-T-S-HHHHHHHHHHHHHHHTT-----GG
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH-----HHHHHHHHH-hCCCHHHHHHHHHHHHHHHHHccchHhh
Confidence 7899999999999999999999999998776511111 123344444 78899999999998888887654 111
Q ss_pred h---hhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHH
Q 014945 236 F---EQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDK 275 (415)
Q Consensus 236 ~---~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~ 275 (415)
. .....+.+.+..++.+.+++||..|-.++..+....++.
T Consensus 169 l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~ 211 (228)
T PF12348_consen 169 LQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPER 211 (228)
T ss_dssp G--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HH
T ss_pred hcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHh
Confidence 1 123568889999999999999999999888886544433
No 104
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=98.22 E-value=2.6e-05 Score=71.99 Aligned_cols=201 Identities=13% Similarity=0.142 Sum_probs=142.3
Q ss_pred HHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCC-CchhhhhchHHHHHHhhcCC
Q 014945 175 EQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQ-PLFEQTRPALPALERLIHSN 253 (415)
Q Consensus 175 ~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~-~~~~~~~~~l~~l~~lL~~~ 253 (415)
..++.+|..++..-...|.-+....+.+.|+++| ++++.-+.-.++..++|+.-.... .......+++..++.++.+.
T Consensus 407 ~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~L-s~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sK 485 (743)
T COG5369 407 VAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDAL-SNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSK 485 (743)
T ss_pred HHHHHHHHHhhHHHHHHHhhccccchHHHHHHHh-cCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcc
Confidence 3445556666666666777788888899999999 666666666677777777655433 33344478899999999999
Q ss_pred ChhHHHHHHHHHHHhccCChHHHH-HHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChH---HHHHHHHC----C
Q 014945 254 DDEVLTDACWALSYLSDGTNDKIQ-AVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM---QTQCIINH----Q 325 (415)
Q Consensus 254 d~~v~~~a~~~l~~l~~~~~~~~~-~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~---~~~~~~~~----~ 325 (415)
|..++.+..|.+.++..+.++..+ .++..-.+..++++.+++.+.++..++..+.|+...... ..+.++.. -
T Consensus 486 DdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~y 565 (743)
T COG5369 486 DDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRY 565 (743)
T ss_pred hhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHH
Confidence 999999999999999877654322 245556679999999999999999999999999874332 12211111 2
Q ss_pred ChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHH-cCCHHHHHHHh
Q 014945 326 ALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE-AGIIGPLVNLL 377 (415)
Q Consensus 326 ~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~-~~~i~~L~~~l 377 (415)
+.+.+.+.+... +|-.-.+.|+.|.++++.+.+-.+.+++ ..++..+..+|
T Consensus 566 lfk~l~~k~e~~-np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil 617 (743)
T COG5369 566 LFKRLIDKYEEN-NPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEIL 617 (743)
T ss_pred HHHHHHHHHHhc-CchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHH
Confidence 456777777777 7877788899999999865554444443 33444444444
No 105
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.21 E-value=5.6e-05 Score=76.11 Aligned_cols=267 Identities=15% Similarity=0.149 Sum_probs=170.8
Q ss_pred HHHHHHhhcC-CCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCC----c
Q 014945 73 LPAMVAGVWS-DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGT----S 147 (415)
Q Consensus 73 i~~l~~~l~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~----~ 147 (415)
++.+...+.+ ...+.+..|+..|..+...- .++..-..++|.++.++.++. .++|..|+..|+.+...- +
T Consensus 424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i----~de~~LDRVlPY~v~l~~Ds~-a~Vra~Al~Tlt~~L~~Vr~~~~ 498 (1431)
T KOG1240|consen 424 VSVLTSCIRALKTIQTKLAALELLQELSTYI----DDEVKLDRVLPYFVHLLMDSE-ADVRATALETLTELLALVRDIPP 498 (1431)
T ss_pred HHHHHHHHHhhhcchhHHHHHHHHHHHhhhc----chHHHHhhhHHHHHHHhcCch-HHHHHHHHHHHHHHHhhccCCCc
Confidence 4556666654 45677888888888874321 122223357999999999998 999999999998876522 1
Q ss_pred hhhHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhcCCC------------------chh-----------HHHHHh
Q 014945 148 ENTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDS------------------PKC-----------RDLVLS 197 (415)
Q Consensus 148 ~~~~~~~~~g~i~~L~~ll~~-~~~~v~~~a~~~L~nl~~~~------------------~~~-----------~~~~~~ 197 (415)
.....+. .=++|.|-.++.+ ....++..-+.+|+.||... +.. ...+..
T Consensus 499 ~daniF~-eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~ 577 (1431)
T KOG1240|consen 499 SDANIFP-EYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHH 577 (1431)
T ss_pred ccchhhH-hhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHH
Confidence 2222222 2357888888877 33445555455555554211 100 000000
Q ss_pred cCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHH
Q 014945 198 NGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQ 277 (415)
Q Consensus 198 ~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~ 277 (415)
.+..++.-|..++++-+++..+..|.-||..... .....-+++.|..+|++.|..+|..-...|..++..-.-+
T Consensus 578 --~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk--~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~r-- 651 (1431)
T KOG1240|consen 578 --TVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGK--EKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWR-- 651 (1431)
T ss_pred --HHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhh--cccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeee--
Confidence 1222232222455566777777777777754311 1112346788888999999998888777777665332211
Q ss_pred HHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhc
Q 014945 278 AVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 355 (415)
Q Consensus 278 ~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~ 355 (415)
-++.+++|.|.+-|.+.++.|...|++++.-++...--....+. .+++....+|-++ +..+|..++..+..+..
T Consensus 652 -s~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~--~i~~~v~PlL~hP-N~WIR~~~~~iI~~~~~ 725 (1431)
T KOG1240|consen 652 -SVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVK--DILQDVLPLLCHP-NLWIRRAVLGIIAAIAR 725 (1431)
T ss_pred -eHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHH--HHHHhhhhheeCc-hHHHHHHHHHHHHHHHh
Confidence 23456789999999999999999999999999875432222222 3567788889999 99999999999887775
No 106
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=98.19 E-value=4.5e-06 Score=60.23 Aligned_cols=87 Identities=31% Similarity=0.517 Sum_probs=70.4
Q ss_pred HHHHHHhh-cCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHH
Q 014945 243 LPALERLI-HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCI 321 (415)
Q Consensus 243 l~~l~~lL-~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~ 321 (415)
+|.|++.| +++++.++..++++++.+- +. .+++.|..++.++++.++..|+++||.+.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~---~~--------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~---------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG---DP--------EAIPALIELLKDEDPMVRRAAARALGRIG---------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT---HH--------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC---CH--------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------
Confidence 57888888 8889999999999999552 11 34799999999999999999999999883
Q ss_pred HHCCChHHHHHHhcCCCccchHHHHHHHHH
Q 014945 322 INHQALPCLLDLLTQNYKKSIKKEACWTIS 351 (415)
Q Consensus 322 ~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~ 351 (415)
+...++.|.+++.++.+..+|..|+++|+
T Consensus 60 -~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 -DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp -HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 12468899999988746667999998885
No 107
>PF05536 Neurochondrin: Neurochondrin
Probab=98.18 E-value=0.00042 Score=67.36 Aligned_cols=238 Identities=18% Similarity=0.154 Sum_probs=164.8
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchh---HHHHHhcCChHHHHHHhccc------hhHhHHHHHHHHHHHhh
Q 014945 158 AVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC---RDLVLSNGALMPLLAQFNEH------AKLSMLRNATWTLSNFC 228 (415)
Q Consensus 158 ~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~---~~~~~~~g~i~~L~~~l~~~------~~~~~~~~a~~~l~~l~ 228 (415)
.+...+.+|++.+++-+-.++..+.++....+.. +..+.+.=+...+-++|... +....+.-++..|+.+|
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~ 85 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC 85 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 3666778888877777777888888888765532 23456655566666777321 34567788888999999
Q ss_pred hCCCCCchhhhhchHHHHHHhhcCCCh-hHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHH
Q 014945 229 RGKPQPLFEQTRPALPALERLIHSNDD-EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV 307 (415)
Q Consensus 229 ~~~~~~~~~~~~~~l~~l~~lL~~~d~-~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l 307 (415)
..+.......+.+.+|.++..+...+. .+...++.+|..++..++.. +.+++.|.++.|.+.+.+ .+.....|+.++
T Consensus 86 ~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~-~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL 163 (543)
T PF05536_consen 86 RDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGA-KALLESGAVPALCEIIPN-QSFQMEIALNLL 163 (543)
T ss_pred CChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhH-HHHHhcCCHHHHHHHHHh-CcchHHHHHHHH
Confidence 865555556778899999999987766 99999999999999655554 779999999999999977 556788899999
Q ss_pred HHhhcCChHHHHH---HHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHH-HHHH----HHcCCHHHHHHHhcc
Q 014945 308 GNIVTGDDMQTQC---IINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQ-IQAI----IEAGIIGPLVNLLLN 379 (415)
Q Consensus 308 ~nl~~~~~~~~~~---~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~-~~~l----~~~~~i~~L~~~l~~ 379 (415)
.+++......... -.-..+++.+...+... ....+-+++..|+++....+.. .... .-..+...+..++.+
T Consensus 164 ~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~-~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~s 242 (543)
T PF05536_consen 164 LNLLSRLGQKSWAEDSQLLHSILPSLARDFSSF-HGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQS 242 (543)
T ss_pred HHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhh-ccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhc
Confidence 9988754421110 00113456666666666 6777888999999988754211 1111 112355666667766
Q ss_pred -CCHHHHHHHHHHHHHHhCC
Q 014945 380 -AEFEIKKEAAWAISNATSG 398 (415)
Q Consensus 380 -~~~~v~~~a~~aL~nl~~~ 398 (415)
..+.-|..|+.....+...
T Consensus 243 r~~~~~R~~al~Laa~Ll~~ 262 (543)
T PF05536_consen 243 RLTPSQRDPALNLAASLLDL 262 (543)
T ss_pred CCCHHHHHHHHHHHHHHHHH
Confidence 4466677777777776644
No 108
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.17 E-value=8e-05 Score=76.73 Aligned_cols=315 Identities=14% Similarity=0.154 Sum_probs=178.7
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhC-CCchhhHH
Q 014945 74 PAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIAS-GTSENTRV 152 (415)
Q Consensus 74 ~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~-~~~~~~~~ 152 (415)
..+...+.+.+|..+..++..|..+...-...+........+...|.++|.+.| +-.|..|.+-++-+=+ ++...++.
T Consensus 821 ~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~d-Ef~QDvAsrGlglVYelgd~~~k~~ 899 (1702)
T KOG0915|consen 821 KLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDND-EFSQDVASRGLGLVYELGDSSLKKS 899 (1702)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccH-HHHHHHHhcCceEEEecCCchhHHH
Confidence 456667778999998876544443322111111112223345588889998887 7788888777654322 22333333
Q ss_pred HHhCCChHHHHHhhCC-----CCHHHHH-------------HHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhH
Q 014945 153 VIDHGAVPIFVRLLSS-----PTDDVRE-------------QAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKL 214 (415)
Q Consensus 153 ~~~~g~i~~L~~ll~~-----~~~~v~~-------------~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~ 214 (415)
+++ +.+..|..-=.+ ++.++.+ ....=|+|||.+-.. -+. +-.++++.+.+-..
T Consensus 900 LV~-sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~q-PdL------VYKFM~LAnh~A~w 971 (1702)
T KOG0915|consen 900 LVD-SLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQ-PDL------VYKFMQLANHNATW 971 (1702)
T ss_pred HHH-HHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCC-hHH------HHHHHHHhhhhchh
Confidence 332 223333220000 1222221 112234444432211 012 22344444333344
Q ss_pred hHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCC
Q 014945 215 SMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH 294 (415)
Q Consensus 215 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~ 294 (415)
.-+.-|++.+..++.............++|.|...=.++|..|+.....+-..|..+....++.... .+++-|+.-|.+
T Consensus 972 nSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~n-eIl~eLL~~lt~ 1050 (1702)
T KOG0915|consen 972 NSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLN-EILDELLVNLTS 1050 (1702)
T ss_pred hcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHH-HHHHHHHHhccc
Confidence 4455566667777765433444455667777777777888888876665555566655555454443 478889999999
Q ss_pred CChhhHHHHHHHHHHhhcCChHHHHHHHHC--CChHHHHHHhcCCCccchHHH---HHHHHHHHhc--C---CHHHHHHH
Q 014945 295 PSPSVLIPALRTVGNIVTGDDMQTQCIINH--QALPCLLDLLTQNYKKSIKKE---ACWTISNITA--G---NVNQIQAI 364 (415)
Q Consensus 295 ~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~--~~l~~L~~ll~~~~~~~v~~~---a~~~l~nl~~--~---~~~~~~~l 364 (415)
..|.+|+.+|-+|..+..+.+.. .+.+. .+...+.+.+++- ...||+. ++.+|+.+|. + ++..-+..
T Consensus 1051 kewRVReasclAL~dLl~g~~~~--~~~e~lpelw~~~fRvmDDI-KEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~ 1127 (1702)
T KOG0915|consen 1051 KEWRVREASCLALADLLQGRPFD--QVKEKLPELWEAAFRVMDDI-KESVREAADKAARALSKLCVRICDVTNGAKGKEA 1127 (1702)
T ss_pred hhHHHHHHHHHHHHHHHcCCChH--HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHH
Confidence 99999999999999999987621 12221 3444555566655 5667764 4556666653 1 22223333
Q ss_pred HHcCCHHHHHHH-hccCCHHHHHHHHHHHHHHhCCCCHH
Q 014945 365 IEAGIIGPLVNL-LLNAEFEIKKEAAWAISNATSGGSNE 402 (415)
Q Consensus 365 ~~~~~i~~L~~~-l~~~~~~v~~~a~~aL~nl~~~~~~~ 402 (415)
++. ++|.|++- +-+.-+++|..++..+..++.+.+.+
T Consensus 1128 l~~-iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~ 1165 (1702)
T KOG0915|consen 1128 LDI-ILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKE 1165 (1702)
T ss_pred HHH-HHHHHhccCcccchHHHHHHHHHHHHHHHHhchhh
Confidence 333 56666552 11456789999999999999776543
No 109
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.17 E-value=0.00038 Score=72.01 Aligned_cols=286 Identities=18% Similarity=0.152 Sum_probs=181.9
Q ss_pred chHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHH
Q 014945 115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDL 194 (415)
Q Consensus 115 ~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 194 (415)
+||.|.++=-+++ ..+|.....+...+..++....+...+ .++.-|+.-+.+....+|+.++.+|..|..+.+. +.
T Consensus 999 LIPrLyRY~yDP~-~~Vq~aM~sIW~~Li~D~k~~vd~y~n-eIl~eLL~~lt~kewRVReasclAL~dLl~g~~~--~~ 1074 (1702)
T KOG0915|consen 999 LIPRLYRYQYDPD-KKVQDAMTSIWNALITDSKKVVDEYLN-EILDELLVNLTSKEWRVREASCLALADLLQGRPF--DQ 1074 (1702)
T ss_pred hhHHHhhhccCCc-HHHHHHHHHHHHHhccChHHHHHHHHH-HHHHHHHHhccchhHHHHHHHHHHHHHHHcCCCh--HH
Confidence 6788888888888 889888888888888876666665554 5677777777788889999999999999987663 23
Q ss_pred HHhc--CChHHHHHHhccchhHhHHHH---HHHHHHHhhhCC-----CCCchhhhhchHHHHH-HhhcCCChhHHHHHHH
Q 014945 195 VLSN--GALMPLLAQFNEHAKLSMLRN---ATWTLSNFCRGK-----PQPLFEQTRPALPALE-RLIHSNDDEVLTDACW 263 (415)
Q Consensus 195 ~~~~--g~i~~L~~~l~~~~~~~~~~~---a~~~l~~l~~~~-----~~~~~~~~~~~l~~l~-~lL~~~d~~v~~~a~~ 263 (415)
+.+. .....+.+.+ ++-.+.++.. ++.+++.+|-.. +.........++|.|+ +.+-+.-++++.-++.
T Consensus 1075 ~~e~lpelw~~~fRvm-DDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~ 1153 (1702)
T KOG0915|consen 1075 VKEKLPELWEAAFRVM-DDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIG 1153 (1702)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHH
Confidence 3221 1233344444 4445555544 456666666432 2222334455666665 2233667899999999
Q ss_pred HHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHH-----------HHHHHHH-HhhcCCh--HHHHHHH-------
Q 014945 264 ALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLI-----------PALRTVG-NIVTGDD--MQTQCII------- 322 (415)
Q Consensus 264 ~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~-----------~a~~~l~-nl~~~~~--~~~~~~~------- 322 (415)
++..++......+.... ...++.|+...+.-++.+.. .|+..+. +.+.+.+ +.+...+
T Consensus 1154 tl~dl~Kssg~~lkP~~-~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~v 1232 (1702)
T KOG0915|consen 1154 TLMDLAKSSGKELKPHF-PKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYIDISV 1232 (1702)
T ss_pred HHHHHHHhchhhhcchh-hHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHH
Confidence 99999987765443222 24566666666655544332 2222222 2222222 1111111
Q ss_pred HCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCHH
Q 014945 323 NHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNE 402 (415)
Q Consensus 323 ~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~ 402 (415)
-...+|.+.+++..+-.-..|..++..++-++...+......... ++..++..+++.++.+++.-..|.+.++....++
T Consensus 1233 Leelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~sgK-ll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~d 1311 (1702)
T KOG0915|consen 1233 LEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYSGK-LLRALFPGAKDRNESVRKAFASAMGYLAKFSSPD 1311 (1702)
T ss_pred HHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcchhH-HHHHHhhccccccHHHHHHHHHHHHHHHhcCChH
Confidence 124678888888776566777788888777775211112222222 5667777788889999999999999999988887
Q ss_pred HHHHH
Q 014945 403 QIKYK 407 (415)
Q Consensus 403 ~~~~l 407 (415)
+.+.+
T Consensus 1312 q~qKL 1316 (1702)
T KOG0915|consen 1312 QMQKL 1316 (1702)
T ss_pred HHHHH
Confidence 87766
No 110
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=7.4e-05 Score=71.58 Aligned_cols=242 Identities=17% Similarity=0.193 Sum_probs=146.9
Q ss_pred chHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHH
Q 014945 115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDL 194 (415)
Q Consensus 115 ~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 194 (415)
....|.+.|++.+++.++..++--|+-..-++... .+.+.+-..|..++.-.-+.|..++|-+.-+....
T Consensus 414 ~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGSa~~-------eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~~--- 483 (929)
T KOG2062|consen 414 ITDYLLQQLKTAENEVVRHGACLGLGLAGMGSANE-------EIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTANQ--- 483 (929)
T ss_pred HHHHHHHHHHhccchhhhhhhhhhccchhcccccH-------HHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCcH---
Confidence 45566666666555666666666555444432211 12344555555555545555555555554333210
Q ss_pred HHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChH
Q 014945 195 VLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTND 274 (415)
Q Consensus 195 ~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~ 274 (415)
.++.-++..-...+...+.+-..-.++-...+. ...+=|.+-+++.+.|+-+|.....++.---.+..
T Consensus 484 ----eaiedm~~Ya~ETQHeki~RGl~vGiaL~~ygr-------qe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTg- 551 (929)
T KOG2062|consen 484 ----EAIEDMLTYAQETQHEKIIRGLAVGIALVVYGR-------QEDADPLIKELLRDKDPILRYGGMYTLALAYVGTG- 551 (929)
T ss_pred ----HHHHHHHHHhhhhhHHHHHHHHHHhHHHHHhhh-------hhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccC-
Confidence 123344444434445555554443333332221 12444566778888888888887765543211111
Q ss_pred HHHHHHHcCcHHHHHHh-cCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHH
Q 014945 275 KIQAVIEAGVCPRLVEL-LRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNI 353 (415)
Q Consensus 275 ~~~~~~~~~~i~~L~~l-L~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl 353 (415)
+.+++..|+.. .++.+.+|+..|..+||-++..++++ ++..+.+|..++++.||..++.+|+-.
T Consensus 552 ------nnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~---------~~s~V~lLses~N~HVRyGaA~ALGIa 616 (929)
T KOG2062|consen 552 ------NNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQ---------LPSTVSLLSESYNPHVRYGAAMALGIA 616 (929)
T ss_pred ------chhhHHHhhcccccccchHHHHHHHHHheeeEecChhh---------chHHHHHHhhhcChhhhhhHHHHHhhh
Confidence 12456777777 57788999999999999999887743 677888888888999999999999999
Q ss_pred hcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhCCCC
Q 014945 354 TAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGS 400 (415)
Q Consensus 354 ~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~ 400 (415)
|+|+...- .+..|-.+..++..-||+.|+.++.-+....+
T Consensus 617 CAGtG~~e-------Ai~lLepl~~D~~~fVRQgAlIa~amIm~Q~t 656 (929)
T KOG2062|consen 617 CAGTGLKE-------AINLLEPLTSDPVDFVRQGALIALAMIMIQQT 656 (929)
T ss_pred hcCCCcHH-------HHHHHhhhhcChHHHHHHHHHHHHHHHHHhcc
Confidence 98543211 23333344556667799999999988875443
No 111
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=98.17 E-value=6.3e-06 Score=59.46 Aligned_cols=87 Identities=28% Similarity=0.443 Sum_probs=69.5
Q ss_pred hHHHHHhh-cCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHH
Q 014945 116 VPRFIEFL-SRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDL 194 (415)
Q Consensus 116 i~~L~~ll-~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 194 (415)
+|.|++.| ++++ +.+|..++++|+.+.. + .+++.|+.+++++++.++..|+++|+.+-
T Consensus 1 i~~L~~~l~~~~~-~~vr~~a~~~L~~~~~--~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~--------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPD-PQVRAEAARALGELGD--P---------EAIPALIELLKDEDPMVRRAAARALGRIG--------- 59 (88)
T ss_dssp HHHHHHHHHTSSS-HHHHHHHHHHHHCCTH--H---------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH---------
T ss_pred CHHHHHHHhcCCC-HHHHHHHHHHHHHcCC--H---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC---------
Confidence 57899999 6666 9999999999995432 1 35899999999999999999999999882
Q ss_pred HHhcCChHHHHHHhccchhHhHHHHHHHHHH
Q 014945 195 VLSNGALMPLLAQFNEHAKLSMLRNATWTLS 225 (415)
Q Consensus 195 ~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~ 225 (415)
....++.|..++.++.+..++..+.++|+
T Consensus 60 --~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 --DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp --HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 12278899999966667777888888874
No 112
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.16 E-value=0.00056 Score=63.05 Aligned_cols=236 Identities=17% Similarity=0.062 Sum_probs=163.3
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccch-hHhHHHHHHHHHHHhhhCCCCCchh
Q 014945 159 VPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA-KLSMLRNATWTLSNFCRGKPQPLFE 237 (415)
Q Consensus 159 i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~-~~~~~~~a~~~l~~l~~~~~~~~~~ 237 (415)
.+.+..++-+++.+++..+.+++..+..+.... ..+.+.+.-..++.-|..+. +..=+..|+..+..+...+.. ...
T Consensus 27 ~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l-~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~-~~~ 104 (371)
T PF14664_consen 27 GERIQCMLLSDSKEVRAAGYRILRYLISDEESL-QILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKG-PKE 104 (371)
T ss_pred HHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHH-HHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCC-ccc
Confidence 444444444455999999999999999887754 56666666556666664433 444567888888888876422 223
Q ss_pred hhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHH
Q 014945 238 QTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQ 317 (415)
Q Consensus 238 ~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~ 317 (415)
.-.+++..++.+.++.++..+..++.+++.++-.+++ .+..+|++..|...+.++..++....+.++-.+...+. .
T Consensus 105 ~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~-t 180 (371)
T PF14664_consen 105 IPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPE---LVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPR-T 180 (371)
T ss_pred CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcc-h
Confidence 3577888999999999999999999999999987774 47789999999999987666688888888888887543 4
Q ss_pred HHHHHHCCChHHHHHHhcCC------Ccc--chHHHHHHHHHHHhcCCHHHHHHHHHc--CCHHHHHHHhccCCHHHHHH
Q 014945 318 TQCIINHQALPCLLDLLTQN------YKK--SIKKEACWTISNITAGNVNQIQAIIEA--GIIGPLVNLLLNAEFEIKKE 387 (415)
Q Consensus 318 ~~~~~~~~~l~~L~~ll~~~------~~~--~v~~~a~~~l~nl~~~~~~~~~~l~~~--~~i~~L~~~l~~~~~~v~~~ 387 (415)
++.+...--++.++.-+.+. .+. ..-..+..++..+...=+. .-.+... ..+..|+..|..+.+++|+.
T Consensus 181 R~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~G-Ll~l~~~~~~~lksLv~~L~~p~~~ir~~ 259 (371)
T PF14664_consen 181 RKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPG-LLYLSMNDFRGLKSLVDSLRLPNPEIRKA 259 (371)
T ss_pred hhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCc-eeeeecCCchHHHHHHHHHcCCCHHHHHH
Confidence 45444433355555444332 022 2334455666655542222 1122222 46888999999999999999
Q ss_pred HHHHHHHHhCCCCH
Q 014945 388 AAWAISNATSGGSN 401 (415)
Q Consensus 388 a~~aL~nl~~~~~~ 401 (415)
....+..+..-..+
T Consensus 260 Ildll~dllrik~p 273 (371)
T PF14664_consen 260 ILDLLFDLLRIKPP 273 (371)
T ss_pred HHHHHHHHHCCCCC
Confidence 99999999876544
No 113
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=98.13 E-value=4.1e-06 Score=54.29 Aligned_cols=55 Identities=27% Similarity=0.466 Sum_probs=47.3
Q ss_pred hhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHH
Q 014945 297 PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNI 353 (415)
Q Consensus 297 ~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl 353 (415)
|.++..|+++||+++...+...... ...+++.|..+|.++ ++.||..|+|+|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~-~~~~~~~L~~~L~d~-~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPY-LPELLPALIPLLQDD-DDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHH-HHHHHHHHHHHTTSS-SHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHH-HHHHHHHHHHHHcCC-CHHHHHHHHHHHhcC
Confidence 5689999999999998887766653 447899999999998 889999999999976
No 114
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.13 E-value=4.6e-05 Score=72.06 Aligned_cols=294 Identities=16% Similarity=0.089 Sum_probs=181.3
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHH---HHHHHhC--CCc
Q 014945 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAW---ALTNIAS--GTS 147 (415)
Q Consensus 73 i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~---~L~~l~~--~~~ 147 (415)
+..+.....++|+.++..|+..+..+..+. ...+. .....++.+++.+ .++|..|+. .++|..- ...
T Consensus 200 ~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~--kL~~~-----~Y~~A~~~lsD~~-e~VR~aAvqlv~v~gn~~p~~~e~ 271 (823)
T KOG2259|consen 200 ARGLIYLEHDQDFRVRTHAVEGLLALSEGF--KLSKA-----CYSRAVKHLSDDY-EDVRKAAVQLVSVWGNRCPAPLER 271 (823)
T ss_pred HHHHHHHhcCCCcchHHHHHHHHHhhcccc--cccHH-----HHHHHHHHhcchH-HHHHHHHHHHHHHHHhcCCCcccc
Confidence 344777777888888888888887764321 11111 3567788898887 899988855 4455541 111
Q ss_pred hhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHh
Q 014945 148 ENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNF 227 (415)
Q Consensus 148 ~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l 227 (415)
+..+.-....++..++..+.+-+..++-.|..+||.+-.-+.++-..- .-..++.-+.... ...+..-...++-
T Consensus 272 e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QT----LdKKlms~lRRkr--~ahkrpk~l~s~G 345 (823)
T KOG2259|consen 272 ESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQT----LDKKLMSRLRRKR--TAHKRPKALYSSG 345 (823)
T ss_pred hhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHH----HHHHHhhhhhhhh--hcccchHHHHhcC
Confidence 222222222567888888988888899999999998865544332221 1222222221000 0000011111111
Q ss_pred --hhCC------CC------CchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcC
Q 014945 228 --CRGK------PQ------PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR 293 (415)
Q Consensus 228 --~~~~------~~------~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~ 293 (415)
++++ |. .......|..-++++-|++.-.+|+.+|...++.|+...+.... ..++.|+.+++
T Consensus 346 ewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~-----~aldfLvDMfN 420 (823)
T KOG2259|consen 346 EWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAV-----RALDFLVDMFN 420 (823)
T ss_pred CcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHH-----HHHHHHHHHhc
Confidence 1111 11 11112255666788888888899999999999999987765432 35789999999
Q ss_pred CCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHH
Q 014945 294 HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPL 373 (415)
Q Consensus 294 ~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L 373 (415)
++...|+..|+.+|..|+.. ..++...++.+...|.+. ++++|.+.-..|.+.--.+-+.+..++ ..|
T Consensus 421 DE~~~VRL~ai~aL~~Is~~------l~i~eeql~~il~~L~D~-s~dvRe~l~elL~~~~~~d~~~i~m~v-----~~l 488 (823)
T KOG2259|consen 421 DEIEVVRLKAIFALTMISVH------LAIREEQLRQILESLEDR-SVDVREALRELLKNARVSDLECIDMCV-----AHL 488 (823)
T ss_pred cHHHHHHHHHHHHHHHHHHH------heecHHHHHHHHHHHHhc-CHHHHHHHHHHHHhcCCCcHHHHHHHH-----HHH
Confidence 99999999999999998864 223445678899999998 999999888888776555555554433 233
Q ss_pred HHHhccCCHHHHHHHHHHHHHHhCC
Q 014945 374 VNLLLNAEFEIKKEAAWAISNATSG 398 (415)
Q Consensus 374 ~~~l~~~~~~v~~~a~~aL~nl~~~ 398 (415)
++.|. .-|.-+.+...++..+...
T Consensus 489 L~~L~-kyPqDrd~i~~cm~~iGqn 512 (823)
T KOG2259|consen 489 LKNLG-KYPQDRDEILRCMGRIGQN 512 (823)
T ss_pred HHHhh-hCCCCcHHHHHHHHHHhcc
Confidence 33333 2233344555566666654
No 115
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.12 E-value=2.7e-05 Score=67.41 Aligned_cols=190 Identities=14% Similarity=0.102 Sum_probs=120.7
Q ss_pred CCCCHHHHHHHHHHHHHhcCCC--chhHHHHHh--cCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhch
Q 014945 167 SSPTDDVREQAVWALGNVAGDS--PKCRDLVLS--NGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPA 242 (415)
Q Consensus 167 ~~~~~~v~~~a~~~L~nl~~~~--~~~~~~~~~--~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~ 242 (415)
.+.+.+.+..++.-|..+.... ......+.. ...+..+...+ .+....+...|+.++..++..-...-......+
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l-~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~ 95 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQL-SDLRSKVSKTACQLLSDLARQLGSHFEPYADIL 95 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S--HH---HHHHHHHHHHHHHHHHGGGGHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Confidence 5577888888998888887554 112222221 02445566666 566778999999999999977544433456778
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCCh---HHHH
Q 014945 243 LPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD---MQTQ 319 (415)
Q Consensus 243 l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~---~~~~ 319 (415)
+|.|++.+.+....++..|..+|..++........ + .++.+...+.+.++.++..++..+..+....+ ....
T Consensus 96 l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~-~----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~ 170 (228)
T PF12348_consen 96 LPPLLKKLGDSKKFIREAANNALDAIIESCSYSPK-I----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQ 170 (228)
T ss_dssp HHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--H-H----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG-
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHH-H----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhc
Confidence 99999999999999999999999999876651111 1 15677778899999999999999999987655 1111
Q ss_pred H-HHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHH
Q 014945 320 C-IINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQA 363 (415)
Q Consensus 320 ~-~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~ 363 (415)
. ..-..+++.+...+.++ ++.||..|-.++..+....++....
T Consensus 171 ~~~~~~~l~~~l~~~l~D~-~~~VR~~Ar~~~~~l~~~~~~~a~~ 214 (228)
T PF12348_consen 171 KSAFLKQLVKALVKLLSDA-DPEVREAARECLWALYSHFPERAES 214 (228)
T ss_dssp -HHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHHHHH-HHH--
T ss_pred ccchHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHCCHhhcc
Confidence 1 11125778899999999 9999999999999887654444433
No 116
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=98.09 E-value=0.0012 Score=55.93 Aligned_cols=245 Identities=18% Similarity=0.214 Sum_probs=149.3
Q ss_pred CCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHH
Q 014945 83 DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIF 162 (415)
Q Consensus 83 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L 162 (415)
.....++.|+..|+++.... .+..+.+...+.+ ...+.+.+.+|+..... .+++.|
T Consensus 17 ~~l~~r~rALf~Lr~l~~~~------------~i~~i~ka~~d~s-~llkhe~ay~LgQ~~~~-----------~Av~~l 72 (289)
T KOG0567|consen 17 QPLQNRFRALFNLRNLLGPA------------AIKAITKAFIDDS-ALLKHELAYVLGQMQDE-----------DAVPVL 72 (289)
T ss_pred HHHHHHHHHHHhhhccCChH------------HHHHHHHhcccch-hhhccchhhhhhhhccc-----------hhhHHH
Confidence 33456777888888876422 1455555555554 56677778888766543 458888
Q ss_pred HHhhCC--CCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCC------
Q 014945 163 VRLLSS--PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQP------ 234 (415)
Q Consensus 163 ~~ll~~--~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~------ 234 (415)
+..+.. ..+-+|..|..+|+++. + +. ..+.+-+.. +++-.++...+..++..+-......
T Consensus 73 ~~vl~desq~pmvRhEAaealga~~-~-~~---------~~~~l~k~~-~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~ 140 (289)
T KOG0567|consen 73 VEVLLDESQEPMVRHEAAEALGAIG-D-PE---------SLEILTKYI-KDPCKEVRETCELAIKRLEWKDIIDKIANSS 140 (289)
T ss_pred HHHhcccccchHHHHHHHHHHHhhc-c-hh---------hHHHHHHHh-cCCccccchHHHHHHHHHHHhhccccccccC
Confidence 887765 45667888888998886 2 21 233344444 5555566666666665554322000
Q ss_pred chh-------hhhchHHHHHHhhcCC-Chh-HHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHH
Q 014945 235 LFE-------QTRPALPALERLIHSN-DDE-VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR 305 (415)
Q Consensus 235 ~~~-------~~~~~l~~l~~lL~~~-d~~-v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~ 305 (415)
... ....-+.-+-..|.+. .+. -+..+.+.|.|+- .++ .+..|.+-+..++.-.+..+..
T Consensus 141 p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g--~Ee---------aI~al~~~l~~~SalfrhEvAf 209 (289)
T KOG0567|consen 141 PYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIG--TEE---------AINALIDGLADDSALFRHEVAF 209 (289)
T ss_pred ccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccC--cHH---------HHHHHHHhcccchHHHHHHHHH
Confidence 011 1112233333333332 222 2344555555542 222 2455667777778889999999
Q ss_pred HHHHhhcCChHHHHHHHHCCChHHHHHHhcC-CCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHH
Q 014945 306 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQ-NYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEI 384 (415)
Q Consensus 306 ~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v 384 (415)
++|.+-.. -.+|.|.+.|.+ .+.+.||.+|+.+|+.++. ++ .++.|.+.+.++++-|
T Consensus 210 VfGQl~s~-----------~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~--e~---------~~~vL~e~~~D~~~vv 267 (289)
T KOG0567|consen 210 VFGQLQSP-----------AAIPSLIKVLLDETEHPMVRHEAAEALGAIAD--ED---------CVEVLKEYLGDEERVV 267 (289)
T ss_pred HHhhccch-----------hhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC--HH---------HHHHHHHHcCCcHHHH
Confidence 99988653 236777776643 3478999999999999984 34 3566777888877878
Q ss_pred HHHHHHHHHHHh
Q 014945 385 KKEAAWAISNAT 396 (415)
Q Consensus 385 ~~~a~~aL~nl~ 396 (415)
++.+..+|.-+-
T Consensus 268 ~esc~valdm~e 279 (289)
T KOG0567|consen 268 RESCEVALDMLE 279 (289)
T ss_pred HHHHHHHHHHHH
Confidence 888777776554
No 117
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=98.08 E-value=0.0029 Score=59.96 Aligned_cols=114 Identities=17% Similarity=0.191 Sum_probs=84.1
Q ss_pred cHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHH-------------HHHHHHCCChHHHHHHhcCCCccchHHHHHHHH
Q 014945 284 VCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQ-------------TQCIINHQALPCLLDLLTQNYKKSIKKEACWTI 350 (415)
Q Consensus 284 ~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~-------------~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l 350 (415)
+++.|+.+|.+ +.+...+.+.++-+....+.. .|.++. .++|.+++..... +...|..-..+|
T Consensus 272 ~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~-~~~p~L~~~~~~~-~~~~k~~yL~AL 347 (415)
T PF12460_consen 272 LLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFT-QVLPKLLEGFKEA-DDEIKSNYLTAL 347 (415)
T ss_pred HHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHH-HHHHHHHHHHhhc-ChhhHHHHHHHH
Confidence 46778888876 567888888888888763322 233333 3567777777776 666888888999
Q ss_pred HHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCH
Q 014945 351 SNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSN 401 (415)
Q Consensus 351 ~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~ 401 (415)
+++..+-|..+-.---..++|.|++.|..++.+++..++.+|..+....+.
T Consensus 348 s~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~ 398 (415)
T PF12460_consen 348 SHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPE 398 (415)
T ss_pred HHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHH
Confidence 999997665442222245899999999999999999999999999988643
No 118
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=98.05 E-value=0.00034 Score=69.50 Aligned_cols=306 Identities=12% Similarity=0.114 Sum_probs=200.4
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHH
Q 014945 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRV 152 (415)
Q Consensus 73 i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~ 152 (415)
++.....++....+.+...+.-...+....+.+....+..+.++|.+-.+..+.+ ..++...+.....++...+.. .
T Consensus 357 ~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~-~~vr~a~a~~~~~~~p~~~k~--~ 433 (759)
T KOG0211|consen 357 VPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNA-LHVRSALASVITGLSPILPKE--R 433 (759)
T ss_pred hhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhccc-chHHHHHhccccccCccCCcC--c
Confidence 4455555555555555555554444433323334445556666888888888877 788887777777665433311 1
Q ss_pred HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCC
Q 014945 153 VIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP 232 (415)
Q Consensus 153 ~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~ 232 (415)
-+ ....|.++..+++..+.++.+..+.+..+-...+...-.......++.+..+- ...+..++..+.+.+..++....
T Consensus 434 ti-~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~-~d~~wRvr~ail~~ip~la~q~~ 511 (759)
T KOG0211|consen 434 TI-SELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELA-EDLLWRVRLAILEYIPQLALQLG 511 (759)
T ss_pred Cc-cccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhc-cchhHHHHHHHHHHHHHHHHhhh
Confidence 11 24577888888889999999999888776544433333344444566666665 45577888888888888886532
Q ss_pred CCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhc
Q 014945 233 QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT 312 (415)
Q Consensus 233 ~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~ 312 (415)
........-+.+...+.+...+++..|...+..++...... -.....++.++....+++...|...+.++.-++.
T Consensus 512 --~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~---w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~ 586 (759)
T KOG0211|consen 512 --VEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFGSE---WARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAE 586 (759)
T ss_pred --hHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcc---hhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHH
Confidence 11111223344445556666789999888888777433311 1122356777777777778888888888876654
Q ss_pred CChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcC-CHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHH
Q 014945 313 GDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWA 391 (415)
Q Consensus 313 ~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~-~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~a 391 (415)
- .-+.+....++|.+..+..++ .+.||-.++..+-.+... .. ...+..+.|.+..+-++.+.+++..|..+
T Consensus 587 v---~g~ei~~~~Llp~~~~l~~D~-vanVR~nvak~L~~i~~~L~~----~~~~~~v~pll~~L~~d~~~dvr~~a~~a 658 (759)
T KOG0211|consen 587 V---LGQEITCEDLLPVFLDLVKDP-VANVRINVAKHLPKILKLLDE----SVRDEEVLPLLETLSSDQELDVRYRAILA 658 (759)
T ss_pred H---hccHHHHHHHhHHHHHhccCC-chhhhhhHHHHHHHHHhhcch----HHHHHHHHHHHHHhccCcccchhHHHHHH
Confidence 2 122344557889999999999 999999999999988863 22 33444567788888888888888888877
Q ss_pred HHHHh
Q 014945 392 ISNAT 396 (415)
Q Consensus 392 L~nl~ 396 (415)
++.+.
T Consensus 659 ~~~i~ 663 (759)
T KOG0211|consen 659 FGSIE 663 (759)
T ss_pred HHHHH
Confidence 77665
No 119
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=98.04 E-value=0.0021 Score=63.37 Aligned_cols=316 Identities=11% Similarity=0.086 Sum_probs=189.8
Q ss_pred CCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHH
Q 014945 82 SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPI 161 (415)
Q Consensus 82 ~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~ 161 (415)
+..|.....+.+.+.+..+.. .....+. .-++...+..+..+..+-++..|+.+++..++ ++..... ..+++..
T Consensus 461 ~e~P~Ll~Ra~~~i~~fs~~~--~~~~~~~-~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~--~~vl~~~-~p~ild~ 534 (1005)
T KOG2274|consen 461 QESPFLLLRAFLTISKFSSST--VINPQLL-QHFLNATVNALTMDVPPPVKISAVRAFCGYCK--VKVLLSL-QPMILDG 534 (1005)
T ss_pred ccCHHHHHHHHHHHHHHHhhh--ccchhHH-HHHHHHHHHhhccCCCCchhHHHHHHHHhccC--ceecccc-chHHHHH
Confidence 345666667777777665431 1111111 11344555555554447788888888888774 3222222 2377888
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHh-ccchhHhHHHHHHHHHHHhhhCCCCCchhhhh
Q 014945 162 FVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQF-NEHAKLSMLRNATWTLSNFCRGKPQPLFEQTR 240 (415)
Q Consensus 162 L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l-~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~ 240 (415)
|+++......++.-..+.+|+..+..+|+.... .+..+.|..+.+. ..+.++.+...+-.++..++... ........
T Consensus 535 L~qlas~~s~evl~llmE~Ls~vv~~dpef~as-~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~-~~~g~m~e 612 (1005)
T KOG2274|consen 535 LLQLASKSSDEVLVLLMEALSSVVKLDPEFAAS-MESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIA-ANYGPMQE 612 (1005)
T ss_pred HHHHcccccHHHHHHHHHHHHHHhccChhhhhh-hhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH-HhhcchHH
Confidence 899888888889999999999999888876333 3444555555554 35567777777778888777642 22223446
Q ss_pred chHHHHHHhhcCCC----hhHHHHHHHHHHHhccCCh-HHHHHHHHcCcHHHHHHhc-CCCChhhHHHHHHHHHHhhcCC
Q 014945 241 PALPALERLIHSND----DEVLTDACWALSYLSDGTN-DKIQAVIEAGVCPRLVELL-RHPSPSVLIPALRTVGNIVTGD 314 (415)
Q Consensus 241 ~~l~~l~~lL~~~d----~~v~~~a~~~l~~l~~~~~-~~~~~~~~~~~i~~L~~lL-~~~~~~v~~~a~~~l~nl~~~~ 314 (415)
.++|.++..+..++ .....-++..|..+..+.+ ...+.++ .-++|.+.++. .+++......+-.||..+....
T Consensus 613 ~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~-~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~ 691 (1005)
T KOG2274|consen 613 RLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLI-CYAFPAVAKITLHSDDHETLQNATECLRALISVT 691 (1005)
T ss_pred HHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHH-HHHhHHhHhheeecCChHHHHhHHHHHHHHHhcC
Confidence 78999999998765 4555566666665554433 2323233 34667777775 5556778888999999998877
Q ss_pred hHHHHHHHHCCChH--HHHHHhcCCCccchHHHHHHHHHHH----hcCCHHHHHHHHHcCCHHHHHHHhc-cCCHHHHHH
Q 014945 315 DMQTQCIINHQALP--CLLDLLTQNYKKSIKKEACWTISNI----TAGNVNQIQAIIEAGIIGPLVNLLL-NAEFEIKKE 387 (415)
Q Consensus 315 ~~~~~~~~~~~~l~--~L~~ll~~~~~~~v~~~a~~~l~nl----~~~~~~~~~~l~~~~~i~~L~~~l~-~~~~~v~~~ 387 (415)
.++...--+.++.. .+++.+..=-+++.-..+|..+|.+ ..+-+..+...++. ++..++.-|. .....+-..
T Consensus 692 ~eq~~t~~~e~g~~~~yImqV~sqLLdp~~sds~a~~VG~lV~tLit~a~~el~~n~d~-IL~Avisrmq~ae~lsviQs 770 (1005)
T KOG2274|consen 692 LEQLLTWHDEPGHNLWYIMQVLSQLLDPETSDSAAAFVGPLVLTLITHASSELGPNLDQ-ILRAVISRLQQAETLSVIQS 770 (1005)
T ss_pred HHHHHhhccCCCccHHHHHHHHHHHcCCccchhHHHHHhHHHHHHHHHHHHHhchhHHH-HHHHHHHHHHHhhhHHHHHH
Confidence 66665555544443 3333332111333344444444443 33322223332222 3344444443 466888888
Q ss_pred HHHHHHHHhCCCCHHHHHHH
Q 014945 388 AAWAISNATSGGSNEQIKYK 407 (415)
Q Consensus 388 a~~aL~nl~~~~~~~~~~~l 407 (415)
-+.+++++........+..|
T Consensus 771 Li~VfahL~~t~~~~~l~FL 790 (1005)
T KOG2274|consen 771 LIMVFAHLVHTDLDQLLNFL 790 (1005)
T ss_pred HHHHHHHHhhCCHHHHHHHH
Confidence 99999999877555554555
No 120
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.02 E-value=0.0023 Score=58.10 Aligned_cols=224 Identities=13% Similarity=0.124 Sum_probs=160.8
Q ss_pred hhccHHHHHHhhcCCCHHHHHHHHHHHHHHhccC----CCC----chhHHHhcCchHHHHHhhcCCC-----ChHHHHHH
Q 014945 69 KLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIE----RSP----PINEVIQSGVVPRFIEFLSRDD-----FPQLQFEA 135 (415)
Q Consensus 69 ~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~----~~~----~~~~~~~~g~i~~L~~ll~~~~-----~~~i~~~a 135 (415)
.+.+++.++++|..+|.++-...+..+..+...+ ..+ .++.+++.++++.|++.+..-+ ...-.+.+
T Consensus 123 eln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~~~ 202 (536)
T KOG2734|consen 123 ELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVHNT 202 (536)
T ss_pred HhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhHHH
Confidence 3578999999999999999999998888875432 112 2466789999999999887544 12334556
Q ss_pred HHHHHHHhCCCchhhHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhc----
Q 014945 136 AWALTNIASGTSENTRVVIDHGAVPIFVRLLSS--PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN---- 209 (415)
Q Consensus 136 ~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~--~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~---- 209 (415)
+.++-|+..-.++....+++.|.+.-|+.-+.. +-..-...|...++-+..++...+...-...++..+++-+.
T Consensus 203 L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk~ 282 (536)
T KOG2734|consen 203 LAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVYKR 282 (536)
T ss_pred HHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchhhc
Confidence 778889999889999999999888877774432 34455677888888888888777788888888999888763
Q ss_pred cc----hhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCCh--HHHHHHHHcC
Q 014945 210 EH----AKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTN--DKIQAVIEAG 283 (415)
Q Consensus 210 ~~----~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~--~~~~~~~~~~ 283 (415)
++ ...++.++...+|+.+.....+.........+....-+++. ....+..++.+|-+...+++ .....+++..
T Consensus 283 ~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~l 361 (536)
T KOG2734|consen 283 HDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGTPNCNKFVEIL 361 (536)
T ss_pred cCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 11 24567788888888777765444444445555555555544 45567788899988887766 5556677777
Q ss_pred cHHHHHHhcC
Q 014945 284 VCPRLVELLR 293 (415)
Q Consensus 284 ~i~~L~~lL~ 293 (415)
++..+.....
T Consensus 362 GLrtiF~~FM 371 (536)
T KOG2734|consen 362 GLRTIFPLFM 371 (536)
T ss_pred hHHHHHHHHh
Confidence 7777766653
No 121
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.01 E-value=0.00039 Score=60.36 Aligned_cols=256 Identities=13% Similarity=0.121 Sum_probs=154.9
Q ss_pred CHHHHHHHHHHHHHHhccCCCCchhH-HHhcCchHHHHHhhcCCC-ChHHHHHHHHHHHHHhCCCchhhHHHHh-CCChH
Q 014945 84 DRNIQLDATTQFRKLLSIERSPPINE-VIQSGVVPRFIEFLSRDD-FPQLQFEAAWALTNIASGTSENTRVVID-HGAVP 160 (415)
Q Consensus 84 ~~~~~~~a~~~l~~l~~~~~~~~~~~-~~~~g~i~~L~~ll~~~~-~~~i~~~a~~~L~~l~~~~~~~~~~~~~-~g~i~ 160 (415)
++-.+..|+.++.++... .+.... ..+...-..++..++..- ..++|+.++.++.-++.. +++.+.+-+ ...+.
T Consensus 162 ~~lTrlfav~cl~~l~~~--~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~-~~~aqdi~K~~dli~ 238 (432)
T COG5231 162 DFLTRLFAVSCLSNLEFD--VEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFS-KECAQDIDKMDDLIN 238 (432)
T ss_pred HHHHHHHHHHHHhhhhhh--HHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcC-HHHHHHHHHHHHHHH
Confidence 444556666666666432 122222 224445567777777632 168999999999988885 666543333 24566
Q ss_pred HHHHhhCC-CCHHHHHHHHHHHHHhcCCCc-hhHHHHHhcCChHHHHHHhccc--hhHhHHHHHHHHHHHhhhCCCCCch
Q 014945 161 IFVRLLSS-PTDDVREQAVWALGNVAGDSP-KCRDLVLSNGALMPLLAQFNEH--AKLSMLRNATWTLSNFCRGKPQPLF 236 (415)
Q Consensus 161 ~L~~ll~~-~~~~v~~~a~~~L~nl~~~~~-~~~~~~~~~g~i~~L~~~l~~~--~~~~~~~~a~~~l~~l~~~~~~~~~ 236 (415)
.|+++... ..+.+.+.++..+.|++...| .......-.|-+.+-++.|... .+++++...-..=+.+-... ...
T Consensus 239 dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~--k~l 316 (432)
T COG5231 239 DLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNT--KKL 316 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhh--hhh
Confidence 67777665 356788899999999987443 2222233344455666666432 36666655544444443321 111
Q ss_pred hhhhchHHHHHH-hhcCCChhHHHHHHHHHHHhccCChHHHHHHHHc--CcHHHHHHhcCCCChh-hHHHHHHHHHHhhc
Q 014945 237 EQTRPALPALER-LIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA--GVCPRLVELLRHPSPS-VLIPALRTVGNIVT 312 (415)
Q Consensus 237 ~~~~~~l~~l~~-lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~--~~i~~L~~lL~~~~~~-v~~~a~~~l~nl~~ 312 (415)
......+.-|-. .|..+.+. +..-.|. .+...+.+. .++..|..++++.++. ...-||.-++.++.
T Consensus 317 ~~fD~Y~~ELdsg~l~wSp~H-~~~dFWs---------~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr 386 (432)
T COG5231 317 CIFDNYLNELDSGRLEWSPYH-HKKDFWS---------TNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVR 386 (432)
T ss_pred hHHHHHHHHHhhCcccCCCcc-cccCchh---------hhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHH
Confidence 111111222211 12211111 1111111 122223332 4678899999887765 66778999999999
Q ss_pred CChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhc
Q 014945 313 GDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 355 (415)
Q Consensus 313 ~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~ 355 (415)
..|+....+...|+-..++.+++|+ +++||-+|..++..+..
T Consensus 387 ~~PE~~~vl~Kyg~k~~im~L~nh~-d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 387 ASPEINAVLSKYGVKEIIMNLINHD-DDDVKFEALQALQTCIS 428 (432)
T ss_pred hCchHHHHHHHhhhHHHHHHHhcCC-CchhhHHHHHHHHHHHh
Confidence 9999999888999999999999999 99999999999876654
No 122
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.00 E-value=0.0039 Score=56.72 Aligned_cols=229 Identities=12% Similarity=0.162 Sum_probs=158.5
Q ss_pred CCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCC-----c----hhhHHHHhCCChHHHHHhhCCCCHHH-
Q 014945 104 SPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGT-----S----ENTRVVIDHGAVPIFVRLLSSPTDDV- 173 (415)
Q Consensus 104 ~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~-----~----~~~~~~~~~g~i~~L~~ll~~~~~~v- 173 (415)
++....+++.++++.|+.+|.+.+ .++-...+..+..++..+ . .-.+.+++.++++.|++-+..-++.+
T Consensus 115 PdLYp~lveln~V~slL~LLgHeN-tDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvk 193 (536)
T KOG2734|consen 115 PDLYPILVELNAVQSLLELLGHEN-TDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVK 193 (536)
T ss_pred hHHHHHHHHhccHHHHHHHhcCCC-chhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcch
Confidence 455567889999999999999998 899999999998888532 2 23456777899999999876533333
Q ss_pred -----HHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhcc-chhHhHHHHHHHHHHHhhhCCCC-CchhhhhchHHHH
Q 014945 174 -----REQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE-HAKLSMLRNATWTLSNFCRGKPQ-PLFEQTRPALPAL 246 (415)
Q Consensus 174 -----~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~-~~~~~~~~~a~~~l~~l~~~~~~-~~~~~~~~~l~~l 246 (415)
...++..+-|+..-.+.+...+.+.|.+.-|+..+.. ..-.....+|..+++-+...... ......-.++..+
T Consensus 194 eea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~l 273 (536)
T KOG2734|consen 194 EEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVL 273 (536)
T ss_pred hhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHH
Confidence 4566778888988888888888899888888885533 23445667788888888776532 2222223344444
Q ss_pred HHhh----cCC-----ChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCCh--
Q 014945 247 ERLI----HSN-----DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD-- 315 (415)
Q Consensus 247 ~~lL----~~~-----d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~-- 315 (415)
++-+ .++ ..+..++...+|+.+....... ..++...+++...-+++. ....+..++++|-....+.+
T Consensus 274 L~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr-~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt 351 (536)
T KOG2734|consen 274 LRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANR-ERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGT 351 (536)
T ss_pred HhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhh-hhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCch
Confidence 4433 221 2456677777777776665554 456666666665555554 44567789999999998877
Q ss_pred HHHHHHHHCCChHHHHHHhc
Q 014945 316 MQTQCIINHQALPCLLDLLT 335 (415)
Q Consensus 316 ~~~~~~~~~~~l~~L~~ll~ 335 (415)
.....+++..++..++.+.-
T Consensus 352 ~~C~kfVe~lGLrtiF~~FM 371 (536)
T KOG2734|consen 352 PNCNKFVEILGLRTIFPLFM 371 (536)
T ss_pred HHHHHHHHHHhHHHHHHHHh
Confidence 66777788877777776543
No 123
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=97.99 E-value=0.00063 Score=68.93 Aligned_cols=272 Identities=14% Similarity=0.128 Sum_probs=171.4
Q ss_pred chHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcC---CCchh
Q 014945 115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAG---DSPKC 191 (415)
Q Consensus 115 ~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~---~~~~~ 191 (415)
+++.+...++.-...+.+..|+..|..++....+.. .+ .-++|.++.++.++...||..|+.+|..+.. +-+..
T Consensus 423 ~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~--~L-DRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~ 499 (1431)
T KOG1240|consen 423 FVSVLTSCIRALKTIQTKLAALELLQELSTYIDDEV--KL-DRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPS 499 (1431)
T ss_pred eHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHH--HH-hhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcc
Confidence 456666666654447889999999988886422211 11 2479999999999999999999999988753 22322
Q ss_pred HHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhh------------------CCCCC------ch----hhh-hch
Q 014945 192 RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR------------------GKPQP------LF----EQT-RPA 242 (415)
Q Consensus 192 ~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~------------------~~~~~------~~----~~~-~~~ 242 (415)
-..++..-.+|.|-.++.++....++...+..|..|+. +.+.. .. ... ..+
T Consensus 500 daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V 579 (1431)
T KOG1240|consen 500 DANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTV 579 (1431)
T ss_pred cchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHH
Confidence 23344444566666666433333333333333333321 11111 00 111 222
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHH
Q 014945 243 LPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCII 322 (415)
Q Consensus 243 l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~ 322 (415)
-...+.++.++++-|+...+..|.-||...... --+.=+++.|+.+|++.++.+|..-...|.-++..-. ..-.
T Consensus 580 ~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~---ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG---~rs~ 653 (1431)
T KOG1240|consen 580 EQMVSSLLSDSPPIVKRALLESIIPLCVFFGKE---KSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVG---WRSV 653 (1431)
T ss_pred HHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhc---ccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEe---eeeH
Confidence 234556677777788888888887777422110 0011257889999999999998887777765554221 1123
Q ss_pred HCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhCC
Q 014945 323 NHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSG 398 (415)
Q Consensus 323 ~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~ 398 (415)
+.+++|.|.+-|.++ .+.|...|..++.-++...--....+.+ ++....-+|-+++.=+|..++..+..++..
T Consensus 654 seyllPLl~Q~ltD~-EE~Viv~aL~~ls~Lik~~ll~K~~v~~--i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ 726 (1431)
T KOG1240|consen 654 SEYLLPLLQQGLTDG-EEAVIVSALGSLSILIKLGLLRKPAVKD--ILQDVLPLLCHPNLWIRRAVLGIIAAIARQ 726 (1431)
T ss_pred HHHHHHHHHHhccCc-chhhHHHHHHHHHHHHHhcccchHHHHH--HHHhhhhheeCchHHHHHHHHHHHHHHHhh
Confidence 457889999999999 9999999999999998731111122222 455666677788888999999988887754
No 124
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.98 E-value=0.00065 Score=63.60 Aligned_cols=283 Identities=13% Similarity=0.110 Sum_probs=152.2
Q ss_pred HhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCC
Q 014945 78 AGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHG 157 (415)
Q Consensus 78 ~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g 157 (415)
..|.+.-..++..+++.++.+.... ....+++ ..+..|-.+|+++. ...|+.|+++|..++-..|+....
T Consensus 271 ~wls~k~emV~lE~Ar~v~~~~~~n---v~~~~~~-~~vs~L~~fL~s~r-v~~rFsA~Riln~lam~~P~kv~v----- 340 (898)
T COG5240 271 SWLSDKFEMVFLEAARAVCALSEEN---VGSQFVD-QTVSSLRTFLKSTR-VVLRFSAMRILNQLAMKYPQKVSV----- 340 (898)
T ss_pred HHhcCcchhhhHHHHHHHHHHHHhc---cCHHHHH-HHHHHHHHHHhcch-HHHHHHHHHHHHHHHhhCCceeee-----
Confidence 3444555677777888777764321 1122222 24667777888877 788888888888888765543211
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchh
Q 014945 158 AVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFE 237 (415)
Q Consensus 158 ~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~ 237 (415)
+=+-+-.++.+.+..+...|+.+|..- +..+..+.++. .++.++.-+ +......+..++..||...|.....
T Consensus 341 cN~evEsLIsd~Nr~IstyAITtLLKT--Gt~e~idrLv~--~I~sfvhD~----SD~FKiI~ida~rsLsl~Fp~k~~s 412 (898)
T COG5240 341 CNKEVESLISDENRTISTYAITTLLKT--GTEETIDRLVN--LIPSFVHDM----SDGFKIIAIDALRSLSLLFPSKKLS 412 (898)
T ss_pred cChhHHHHhhcccccchHHHHHHHHHc--CchhhHHHHHH--HHHHHHHhh----ccCceEEeHHHHHHHHhhCcHHHHH
Confidence 112233455555555544444444332 22222233222 222222222 2333344445555555444433332
Q ss_pred hhhchHHHHHHhh-cCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCC-hhhHHHHHHHHHHhhcCCh
Q 014945 238 QTRPALPALERLI-HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPS-PSVLIPALRTVGNIVTGDD 315 (415)
Q Consensus 238 ~~~~~l~~l~~lL-~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~-~~v~~~a~~~l~nl~~~~~ 315 (415)
. +..|...| +...-+....+..++..+....++..+ .++..|..++.+.+ +.+. +++|+-+....|
T Consensus 413 ~----l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skE-----raLe~LC~fIEDcey~~I~---vrIL~iLG~EgP 480 (898)
T COG5240 413 Y----LDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKE-----RALEVLCTFIEDCEYHQIT---VRILGILGREGP 480 (898)
T ss_pred H----HHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHH-----HHHHHHHHHHhhcchhHHH---HHHHHHhcccCC
Confidence 2 33333322 344566777788888877766654433 23456666665443 3344 444444433222
Q ss_pred HHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHH
Q 014945 316 MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNA 395 (415)
Q Consensus 316 ~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl 395 (415)
.... ....+-++..-+--. +.-+|..|..+|+.++-+-.+ .+....+...|-+++.+.|.+||..|..+|.++
T Consensus 481 ~a~~---P~~yvrhIyNR~iLE-N~ivRsaAv~aLskf~ln~~d---~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~ 553 (898)
T COG5240 481 RAKT---PGKYVRHIYNRLILE-NNIVRSAAVQALSKFALNISD---VVSPQSVENALKRCLNDQDDEVRDRASFLLRNM 553 (898)
T ss_pred CCCC---cchHHHHHHHHHHHh-hhHHHHHHHHHHHHhccCccc---cccHHHHHHHHHHHhhcccHHHHHHHHHHHHhh
Confidence 1100 011233444433334 668999999999888763221 112222556788889999999999999999998
Q ss_pred hC
Q 014945 396 TS 397 (415)
Q Consensus 396 ~~ 397 (415)
-.
T Consensus 554 ~~ 555 (898)
T COG5240 554 RL 555 (898)
T ss_pred hh
Confidence 63
No 125
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=0.011 Score=59.77 Aligned_cols=312 Identities=15% Similarity=0.127 Sum_probs=180.2
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhH
Q 014945 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 151 (415)
Q Consensus 72 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~ 151 (415)
.+..|++.+++.|..++..|+..+..+.+.- | . .+.+ .++...+.++...+.+..-..|+-+|+.++...---..
T Consensus 342 vie~Lls~l~d~dt~VrWSaAKg~grvt~rl--p-~-~Lad-~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps 416 (1133)
T KOG1943|consen 342 VIEHLLSALSDTDTVVRWSAAKGLGRVTSRL--P-P-ELAD-QVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPS 416 (1133)
T ss_pred HHHHHHHhccCCcchhhHHHHHHHHHHHccC--c-H-HHHH-HHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchH
Confidence 4677888888999999999999999998653 2 1 1211 24566666666544356677899999999975322222
Q ss_pred HHHhCCChHHHHHhhC--------CCCHHHHHHHHHHHHHhcCCCchh-HHHHHhcCChHHHHHHhccchhHhHHHHHHH
Q 014945 152 VVIDHGAVPIFVRLLS--------SPTDDVREQAVWALGNVAGDSPKC-RDLVLSNGALMPLLAQFNEHAKLSMLRNATW 222 (415)
Q Consensus 152 ~~~~~g~i~~L~~ll~--------~~~~~v~~~a~~~L~nl~~~~~~~-~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~ 222 (415)
.+. .++|.++.-|. +....+|+.|+++++.++...... -+.+.. .....|+..---+.+..+++.|..
T Consensus 417 ~l~--dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~-~L~s~LL~~AlFDrevncRRAAsA 493 (1133)
T KOG1943|consen 417 LLE--DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQ-SLASALLIVALFDREVNCRRAASA 493 (1133)
T ss_pred HHH--HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHH-HHHHHHHHHHhcCchhhHhHHHHH
Confidence 222 24566665553 134679999999999998543321 111111 122222222225667788888888
Q ss_pred HHHHhhhCCCCCc----hh-----------------------hhhchHHH-HHHh----hcCCChhHHHHHHHHHHHhcc
Q 014945 223 TLSNFCRGKPQPL----FE-----------------------QTRPALPA-LERL----IHSNDDEVLTDACWALSYLSD 270 (415)
Q Consensus 223 ~l~~l~~~~~~~~----~~-----------------------~~~~~l~~-l~~l----L~~~d~~v~~~a~~~l~~l~~ 270 (415)
++-......++.+ .. ...+.... +-++ +.+-|..+++-+.++|..|+.
T Consensus 494 AlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~ 573 (1133)
T KOG1943|consen 494 ALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSL 573 (1133)
T ss_pred HHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHH
Confidence 8776654422211 00 01122222 2222 345689999999999999987
Q ss_pred CChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHH---HHHHH---CCC---hHHHHH-HhcCCCcc
Q 014945 271 GTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQT---QCIIN---HQA---LPCLLD-LLTQNYKK 340 (415)
Q Consensus 271 ~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~---~~~~~---~~~---l~~L~~-ll~~~~~~ 340 (415)
..++. ...+.++.++....+.+...+.-+..+.|.++.+..... ..+.+ ++. ++.+.. .+..+...
T Consensus 574 ~~pk~----~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg~~~ 649 (1133)
T KOG1943|consen 574 TEPKY----LADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPPICDRYFYRGQGT 649 (1133)
T ss_pred hhHHh----hcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHHHHHHhccchHH
Confidence 66543 335677888888878888777777666666654322111 10111 121 222222 22222122
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHh
Q 014945 341 SIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT 396 (415)
Q Consensus 341 ~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~ 396 (415)
-.+...+..+-++...........+-.+.-..+.+.+..++ .+|..|.++++.++
T Consensus 650 lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~ 704 (1133)
T KOG1943|consen 650 LMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLV 704 (1133)
T ss_pred HHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHH
Confidence 34555566666776654443444443434445555554444 78888999988887
No 126
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.93 E-value=0.0001 Score=53.52 Aligned_cols=93 Identities=14% Similarity=0.187 Sum_probs=70.2
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhcc
Q 014945 300 LIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN 379 (415)
Q Consensus 300 ~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~ 379 (415)
|..++.+|+.++.+-+......++ .++++++..+.++ +++||..||.+|.|++....+.+-... ..+++.|.+++.+
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~-~Il~pVL~~~~D~-d~rVRy~AcEaL~ni~k~~~~~~l~~f-~~IF~~L~kl~~D 79 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLD-EILPPVLKCFDDQ-DSRVRYYACEALYNISKVARGEILPYF-NEIFDALCKLSAD 79 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHH-HHHHHHHHHcCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcC
Confidence 566788888887766655554444 6889999999999 999999999999999974443333322 3489999999999
Q ss_pred CCHHHHHHHHHHHHHHh
Q 014945 380 AEFEIKKEAAWAISNAT 396 (415)
Q Consensus 380 ~~~~v~~~a~~aL~nl~ 396 (415)
.++.||..| +.|-++.
T Consensus 80 ~d~~Vr~~a-~~Ld~ll 95 (97)
T PF12755_consen 80 PDENVRSAA-ELLDRLL 95 (97)
T ss_pred CchhHHHHH-HHHHHHh
Confidence 999998866 5555543
No 127
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.91 E-value=0.018 Score=57.20 Aligned_cols=141 Identities=16% Similarity=0.154 Sum_probs=111.6
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhH
Q 014945 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 151 (415)
Q Consensus 72 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~ 151 (415)
-++.+++...+.|.+++...-..|..+.... |...+. .++.+.+=+++++ +.+|..|++.++.+=. ++...
T Consensus 56 Lf~dViK~~~trd~ElKrL~ylYl~~yak~~---P~~~lL---avNti~kDl~d~N-~~iR~~AlR~ls~l~~--~el~~ 126 (757)
T COG5096 56 LFPDVIKNVATRDVELKRLLYLYLERYAKLK---PELALL---AVNTIQKDLQDPN-EEIRGFALRTLSLLRV--KELLG 126 (757)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhccC---HHHHHH---HHHHHHhhccCCC-HHHHHHHHHHHHhcCh--HHHHH
Confidence 3577777777888888888888888886543 233333 4788899999999 9999999999987654 22222
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhC
Q 014945 152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 230 (415)
Q Consensus 152 ~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~ 230 (415)
.+++.+.+++.++++.||..|+.|+.++-.-++ +.+.+.|.+..+..++ .+.++.+..+|+.++..+...
T Consensus 127 -----~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~---~l~~~~g~~~~l~~l~-~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 127 -----NIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDK---DLYHELGLIDILKELV-ADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred -----HHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCH---hhhhcccHHHHHHHHh-hCCCchHHHHHHHHHHHhchh
Confidence 357899999999999999999999999986654 4667777777777777 889999999999999988765
No 128
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.88 E-value=0.00089 Score=66.05 Aligned_cols=164 Identities=13% Similarity=0.169 Sum_probs=124.9
Q ss_pred hHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhc
Q 014945 213 KLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL 292 (415)
Q Consensus 213 ~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL 292 (415)
+..-....=.+++.+..+++ +..++|-+++.+.+.|.++..-.-.-+...+...++.. +. ++..+..=+
T Consensus 33 ~~~kidAmK~iIa~M~~G~d------mssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~--lL---avNti~kDl 101 (757)
T COG5096 33 DYKKIDAMKKIIAQMSLGED------MSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELA--LL---AVNTIQKDL 101 (757)
T ss_pred hHHHHHHHHHHHHHHhcCCC------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHH--HH---HHHHHHhhc
Confidence 33344444466677776643 56677888888888899988887777777777766432 22 357777888
Q ss_pred CCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHH
Q 014945 293 RHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGP 372 (415)
Q Consensus 293 ~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~ 372 (415)
.++++.+|..|+++++.+-.. .+++ .+++.+.+++.++ ++.||+.|+.++..+-.-+++ .+-+.|.+..
T Consensus 102 ~d~N~~iR~~AlR~ls~l~~~------el~~-~~~~~ik~~l~d~-~ayVRk~Aalav~kly~ld~~---l~~~~g~~~~ 170 (757)
T COG5096 102 QDPNEEIRGFALRTLSLLRVK------ELLG-NIIDPIKKLLTDP-HAYVRKTAALAVAKLYRLDKD---LYHELGLIDI 170 (757)
T ss_pred cCCCHHHHHHHHHHHHhcChH------HHHH-HHHHHHHHHccCC-cHHHHHHHHHHHHHHHhcCHh---hhhcccHHHH
Confidence 999999999999999887431 2222 5678999999999 999999999999999875444 4456788889
Q ss_pred HHHHhccCCHHHHHHHHHHHHHHhCC
Q 014945 373 LVNLLLNAEFEIKKEAAWAISNATSG 398 (415)
Q Consensus 373 L~~~l~~~~~~v~~~a~~aL~nl~~~ 398 (415)
+..++.+.+|.|..+|..+|..+-..
T Consensus 171 l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 171 LKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHhhCCCchHHHHHHHHHHHhchh
Confidence 99999999999999999999988754
No 129
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.88 E-value=0.00088 Score=64.97 Aligned_cols=253 Identities=18% Similarity=0.208 Sum_probs=131.9
Q ss_pred chHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHH
Q 014945 115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDL 194 (415)
Q Consensus 115 ~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 194 (415)
..+.+-.++.+.. ..+..+|++++.++...++.... ..+..|--+++++...+|-.|.++|..+|.-.|..-..
T Consensus 246 ~~~fl~s~l~~K~-emV~~EaArai~~l~~~~~r~l~-----pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~ 319 (865)
T KOG1078|consen 246 LFPFLESCLRHKS-EMVIYEAARAIVSLPNTNSRELA-----PAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTV 319 (865)
T ss_pred HHHHHHHHHhchh-HHHHHHHHHHHhhccccCHhhcc-----hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccc
Confidence 4556666777777 89999999999988775433221 26777888889999999999999999999776642111
Q ss_pred HHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChH
Q 014945 195 VLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTND 274 (415)
Q Consensus 195 ~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~ 274 (415)
..--++.|+ .+.+.. .+..++..+..............-++..+.=+.++..-+..+++.+++.......
T Consensus 320 --cN~elE~lI----td~Nrs---Iat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~- 389 (865)
T KOG1078|consen 320 --CNLDLESLI----TDSNRS---IATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKH- 389 (865)
T ss_pred --cchhHHhhh----cccccc---hhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHH-
Confidence 000122222 222222 2222333333222222222222333333333333333444455554444321110
Q ss_pred HHHHHHHcCcHHHHHHhcCCC-ChhhHHHHHHHHHHhhcCChHHHHH--------HH-----------------------
Q 014945 275 KIQAVIEAGVCPRLVELLRHP-SPSVLIPALRTVGNIVTGDDMQTQC--------II----------------------- 322 (415)
Q Consensus 275 ~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~~l~nl~~~~~~~~~~--------~~----------------------- 322 (415)
.+.+..|..+|... .-+.......++..++...++.... +.
T Consensus 390 -------~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~~L~~LCefIEDce~~~i~~rILhlLG~EgP~a~ 462 (865)
T KOG1078|consen 390 -------TVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKERGLEHLCEFIEDCEFTQIAVRILHLLGKEGPKAP 462 (865)
T ss_pred -------HHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHhccchHHHHHHHHHHhccCCCCC
Confidence 11122222222211 1122222222222222211111100 00
Q ss_pred -HCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHh
Q 014945 323 -NHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT 396 (415)
Q Consensus 323 -~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~ 396 (415)
....+..+...+-=. +..+|..|..++.++..+++.-. ..+...|.+++.+.|.++|..|..+|.++-
T Consensus 463 ~Pskyir~iyNRviLE-n~ivRaaAv~alaKfg~~~~~l~-----~sI~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 463 NPSKYIRFIYNRVILE-NAIVRAAAVSALAKFGAQDVVLL-----PSILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred CcchhhHHHhhhhhhh-hhhhHHHHHHHHHHHhcCCCCcc-----ccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 112233344333333 67889999999999996544322 225667888889999999999999999988
No 130
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.82 E-value=6.6e-05 Score=45.10 Aligned_cols=38 Identities=47% Similarity=0.682 Sum_probs=35.2
Q ss_pred HHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHh
Q 014945 359 NQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT 396 (415)
Q Consensus 359 ~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~ 396 (415)
++...+++.|+++.|+.++.++++++++.|+|+|.|++
T Consensus 3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 46778889999999999999999999999999999987
No 131
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.81 E-value=0.00013 Score=53.05 Aligned_cols=67 Identities=16% Similarity=0.354 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhh--CCCCHHHHHHHHHHHHHhcCCCchhHHHHHh
Q 014945 131 LQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLL--SSPTDDVREQAVWALGNVAGDSPKCRDLVLS 197 (415)
Q Consensus 131 i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll--~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~ 197 (415)
++...+.+|+|++..++...+.+.+.|++|.++... +..+|.+++.|++++.|++.++++.+..+.+
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 356788999999999999999999999999999964 4578999999999999999999988777654
No 132
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=97.79 E-value=0.0036 Score=61.85 Aligned_cols=232 Identities=14% Similarity=0.159 Sum_probs=157.1
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHH
Q 014945 167 SSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPAL 246 (415)
Q Consensus 167 ~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l 246 (415)
.+..+.+.-.+.|+++.++...+....... .++...+..+..+..+.++..++.+++..|. +........+++..|
T Consensus 460 ~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~--~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~--~~vl~~~~p~ild~L 535 (1005)
T KOG2274|consen 460 YQESPFLLLRAFLTISKFSSSTVINPQLLQ--HFLNATVNALTMDVPPPVKISAVRAFCGYCK--VKVLLSLQPMILDGL 535 (1005)
T ss_pred cccCHHHHHHHHHHHHHHHhhhccchhHHH--HHHHHHHHhhccCCCCchhHHHHHHHHhccC--ceeccccchHHHHHH
Confidence 446677777999999988755433222221 2455666666566777788888888888883 333334446777788
Q ss_pred HHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhc--CCCChhhHHHHHHHHHHhhcCChHHHHHHHHC
Q 014945 247 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL--RHPSPSVLIPALRTVGNIVTGDDMQTQCIINH 324 (415)
Q Consensus 247 ~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL--~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~ 324 (415)
.++......++..-...+|+..+..+++.. ...++.+.|.++.++ .+++|.+...+-.++-.++.... . ..-+..
T Consensus 536 ~qlas~~s~evl~llmE~Ls~vv~~dpef~-as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~-~-~g~m~e 612 (1005)
T KOG2274|consen 536 LQLASKSSDEVLVLLMEALSSVVKLDPEFA-ASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAA-N-YGPMQE 612 (1005)
T ss_pred HHHcccccHHHHHHHHHHHHHHhccChhhh-hhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHH-h-hcchHH
Confidence 888888888999999999999998888764 356677888888776 35567676666666666654211 1 111223
Q ss_pred CChHHHHHHhcCCCc----cchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHh-ccCCHHHHHHHHHHHHHHhCCC
Q 014945 325 QALPCLLDLLTQNYK----KSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLL-LNAEFEIKKEAAWAISNATSGG 399 (415)
Q Consensus 325 ~~l~~L~~ll~~~~~----~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l-~~~~~~v~~~a~~aL~nl~~~~ 399 (415)
-.+|.++..+..+ . ......+.-.|..+..+.|.-....+-.-++|.+.++. .++|..+-..+..||.-+...+
T Consensus 613 ~~iPslisil~~~-~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~ 691 (1005)
T KOG2274|consen 613 RLIPSLISVLQLN-ADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVT 691 (1005)
T ss_pred HHHHHHHHHHcCc-ccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcC
Confidence 5789999999877 5 56667777778778775443333333333688888874 5577888899999999998775
Q ss_pred CHHHHHH
Q 014945 400 SNEQIKY 406 (415)
Q Consensus 400 ~~~~~~~ 406 (415)
.++...+
T Consensus 692 ~eq~~t~ 698 (1005)
T KOG2274|consen 692 LEQLLTW 698 (1005)
T ss_pred HHHHHhh
Confidence 4443343
No 133
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.77 E-value=0.0033 Score=62.72 Aligned_cols=282 Identities=14% Similarity=0.153 Sum_probs=164.0
Q ss_pred CchHHHHHhhc------CC-CChHHHHHHHHHHHHHhCC--CchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHh
Q 014945 114 GVVPRFIEFLS------RD-DFPQLQFEAAWALTNIASG--TSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNV 184 (415)
Q Consensus 114 g~i~~L~~ll~------~~-~~~~i~~~a~~~L~~l~~~--~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl 184 (415)
|+++.+++.+. .+ +++.-+..|++.++++++- .+.--...++.-+++.+.-.++++.--++..|+|.++.+
T Consensus 410 k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~ 489 (1010)
T KOG1991|consen 410 KILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQF 489 (1010)
T ss_pred hHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHH
Confidence 45666777776 22 2366778889988888841 111112223333455666677888888999999999999
Q ss_pred cCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCC---chhhhhchHHHHHHhhcCCChhHHHHH
Q 014945 185 AGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQP---LFEQTRPALPALERLIHSNDDEVLTDA 261 (415)
Q Consensus 185 ~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~---~~~~~~~~l~~l~~lL~~~d~~v~~~a 261 (415)
+...- .+...-..++....+.|..+.+.+++..|+.+|..+..+.+.. ....+.+.+..++++.+.-+.+.....
T Consensus 490 ~~~df--~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~v 567 (1010)
T KOG1991|consen 490 SSIDF--KDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLTNV 567 (1010)
T ss_pred HhccC--CChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHHHH
Confidence 84332 2222223366777777856888899999999999998876433 223345556666666666555555554
Q ss_pred HHHH-HHhccCChHHHHHHHHcCcHHHHHHhcCC---CC---hhhHHHHHHHHHH---hhcCCh--HHHHHHHHCCChHH
Q 014945 262 CWAL-SYLSDGTNDKIQAVIEAGVCPRLVELLRH---PS---PSVLIPALRTVGN---IVTGDD--MQTQCIINHQALPC 329 (415)
Q Consensus 262 ~~~l-~~l~~~~~~~~~~~~~~~~i~~L~~lL~~---~~---~~v~~~a~~~l~n---l~~~~~--~~~~~~~~~~~l~~ 329 (415)
+..+ +..+..-....-.+. ..+.....+++.. .+ ..=...|.++|.. +...-+ ...-.-++..++|.
T Consensus 568 me~iV~~fseElsPfA~eL~-q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~~~l~v 646 (1010)
T KOG1991|consen 568 MEKIVCKFSEELSPFAVELC-QNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQLEPIVLPV 646 (1010)
T ss_pred HHHHHHHHHHhhchhHHHHH-HHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4433 222221111111111 1344555556652 11 1222333343333 332211 11222234466777
Q ss_pred HHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCH
Q 014945 330 LLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSN 401 (415)
Q Consensus 330 L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~ 401 (415)
+-.++++. -.++-++++-.+.+++...++.-..+. |+++.+.+.+.....+--....-+|.|+.+.|.+
T Consensus 647 i~~iL~~~-i~dfyeE~~ei~~~~t~~~~~Isp~mW--~ll~li~e~~~~~~~dyf~d~~~~l~N~vt~g~~ 715 (1010)
T KOG1991|consen 647 IGFILKND-ITDFYEELLEIVSSLTFLSKEISPIMW--GLLELILEVFQDDGIDYFTDMMPALHNYVTYGTP 715 (1010)
T ss_pred HHHHHHHh-hHHHHHHHHHHHhhhhhhhcccCHHHH--HHHHHHHHHHhhhhHHHHHHHHHHHhhheeeCch
Confidence 77788777 778888888888877764433222222 2567777777776677777777788888776654
No 134
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.76 E-value=0.004 Score=59.29 Aligned_cols=268 Identities=15% Similarity=0.117 Sum_probs=156.1
Q ss_pred HHHHHhCCCchhhHHHHhCCChHHHHHhh----------CCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHH
Q 014945 138 ALTNIASGTSENTRVVIDHGAVPIFVRLL----------SSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQ 207 (415)
Q Consensus 138 ~L~~l~~~~~~~~~~~~~~g~i~~L~~ll----------~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~ 207 (415)
+|.-++.+ +...+.+....++..|.++- ..++..+...|+.||+|+...++..|..+.+.|..+.++..
T Consensus 4 ~LRiLsRd-~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~ 82 (446)
T PF10165_consen 4 TLRILSRD-PTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCER 82 (446)
T ss_pred HHHHHccC-cccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHH
Confidence 34334443 44555555555566666654 33678899999999999999999999999999999999999
Q ss_pred hccc----hhHhHHHHHHHHHHHhhhCCCCCch--hhhhchHHHHHHhh----cC-------------CChhHHHHHHHH
Q 014945 208 FNEH----AKLSMLRNATWTLSNFCRGKPQPLF--EQTRPALPALERLI----HS-------------NDDEVLTDACWA 264 (415)
Q Consensus 208 l~~~----~~~~~~~~a~~~l~~l~~~~~~~~~--~~~~~~l~~l~~lL----~~-------------~d~~v~~~a~~~ 264 (415)
|... .+.++.-..+..+.-++...+.... ....+++..+...| .. .+.....+++.+
T Consensus 83 Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKl 162 (446)
T PF10165_consen 83 LKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKL 162 (446)
T ss_pred HHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHH
Confidence 9543 1455555555555555544322221 11123444444333 11 245678889999
Q ss_pred HHHhccCChHHHHHHHHcCcHHHHHHhcC---------CCChhhHHHHHHHHHHhhcCChHH-------HHH----HHHC
Q 014945 265 LSYLSDGTNDKIQAVIEAGVCPRLVELLR---------HPSPSVLIPALRTVGNIVTGDDMQ-------TQC----IINH 324 (415)
Q Consensus 265 l~~l~~~~~~~~~~~~~~~~i~~L~~lL~---------~~~~~v~~~a~~~l~nl~~~~~~~-------~~~----~~~~ 324 (415)
+.|++...+.... -...+.++.++.++. .+.......++.+|.|+--..... ... ..+.
T Consensus 163 lFNit~~~~~~~~-~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~ 241 (446)
T PF10165_consen 163 LFNITLHYPKSVP-EEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNM 241 (446)
T ss_pred HHHhhhccCcccc-hhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCCh
Confidence 9999765443221 011223333333321 112345666777777763211111 000 0112
Q ss_pred CChHHHHHHhcCC----Ccc---chHHHHHHHHHHHhcCCHHHHHHHHH----------------cCCHHHHHHHhccCC
Q 014945 325 QALPCLLDLLTQN----YKK---SIKKEACWTISNITAGNVNQIQAIIE----------------AGIIGPLVNLLLNAE 381 (415)
Q Consensus 325 ~~l~~L~~ll~~~----~~~---~v~~~a~~~l~nl~~~~~~~~~~l~~----------------~~~i~~L~~~l~~~~ 381 (415)
..+..|+.+|... ... ..-.-...+|.+++..+...++++.. ..+-..|++++.+..
T Consensus 242 ~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~ 321 (446)
T PF10165_consen 242 DVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPD 321 (446)
T ss_pred HHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCC
Confidence 3455566655322 111 23344556677777766555555533 234678999999988
Q ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHH
Q 014945 382 FEIKKEAAWAISNATSGGSNEQIKYK 407 (415)
Q Consensus 382 ~~v~~~a~~aL~nl~~~~~~~~~~~l 407 (415)
+.++..+...|..++.......++|.
T Consensus 322 ~~~k~~vaellf~Lc~~d~~~~v~~~ 347 (446)
T PF10165_consen 322 PQLKDAVAELLFVLCKEDASRFVKYV 347 (446)
T ss_pred chHHHHHHHHHHHHHhhhHHHHHHHc
Confidence 99999999999999866544544443
No 135
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.74 E-value=9e-05 Score=44.51 Aligned_cols=39 Identities=38% Similarity=0.753 Sum_probs=35.8
Q ss_pred chhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 014945 147 SENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVA 185 (415)
Q Consensus 147 ~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~ 185 (415)
++.+..+.+.|+++.|+.++.++++.++..++|+|+||+
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 457788889999999999999999999999999999997
No 136
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=97.74 E-value=0.0033 Score=62.73 Aligned_cols=149 Identities=15% Similarity=0.095 Sum_probs=87.8
Q ss_pred ChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHH
Q 014945 200 ALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAV 279 (415)
Q Consensus 200 ~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~ 279 (415)
+++.+-.+. .+.+..++...+..+..+..-.+ ....+...+|.+...+++.++.|+.+..+.+..+-...+..-...
T Consensus 399 ilp~~~~lv-~d~~~~vr~a~a~~~~~~~p~~~--k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~ 475 (759)
T KOG0211|consen 399 ILPEVQVLV-LDNALHVRSALASVITGLSPILP--KERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGIST 475 (759)
T ss_pred hhHHHHHHH-hcccchHHHHHhccccccCccCC--cCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchh
Confidence 344444444 55566666666655555543322 233446778888889999999999999987766543333221223
Q ss_pred HHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhc
Q 014945 280 IEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 355 (415)
Q Consensus 280 ~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~ 355 (415)
+....++.+..+-....+.++...++.+-.++.... ..+++...-+.+...+.+. ...+++.|+..+..++.
T Consensus 476 ~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~---~~~~~~~~~~l~~~~l~d~-v~~Ir~~aa~~l~~l~~ 547 (759)
T KOG0211|consen 476 VSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG---VEFFDEKLAELLRTWLPDH-VYSIREAAARNLPALVE 547 (759)
T ss_pred hhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh---hHHhhHHHHHHHHhhhhhh-HHHHHHHHHHHhHHHHH
Confidence 444566777777666678888888888777775332 2233333334444444444 45566666665555553
No 137
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=0.0044 Score=62.50 Aligned_cols=260 Identities=15% Similarity=0.144 Sum_probs=159.9
Q ss_pred CchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhcCCCchhH
Q 014945 114 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCR 192 (415)
Q Consensus 114 g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~v~~~a~~~L~nl~~~~~~~~ 192 (415)
+++..|+..+++.+ ..++..|+..++.++...|.. +.+ .++...+.++.- +++..-..++-+|+.++...--.-
T Consensus 341 ~vie~Lls~l~d~d-t~VrWSaAKg~grvt~rlp~~---Lad-~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlp 415 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTD-TVVRWSAAKGLGRVTSRLPPE---LAD-QVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLP 415 (1133)
T ss_pred HHHHHHHHhccCCc-chhhHHHHHHHHHHHccCcHH---HHH-HHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcch
Confidence 57888888899988 899999999999999876622 221 345566665543 334455588999999986543222
Q ss_pred HHHHhcCChHHHHHHhcc-------chhHhHHHHHHHHHHHhhhCC-CCCchhhhhchHHHHH-HhhcCCChhHHHHHHH
Q 014945 193 DLVLSNGALMPLLAQFNE-------HAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALE-RLIHSNDDEVLTDACW 263 (415)
Q Consensus 193 ~~~~~~g~i~~L~~~l~~-------~~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~l~~l~-~lL~~~d~~v~~~a~~ 263 (415)
..+.. +++.++.-|.. .....++..||.+++.+++.. +..-......+.+.|+ ..+.+.+-.+|..|..
T Consensus 416 s~l~d--VvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsA 493 (1133)
T KOG1943|consen 416 SLLED--VVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASA 493 (1133)
T ss_pred HHHHH--HHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHH
Confidence 22222 45555555421 224568888998888888876 3333334444555433 4456677788888888
Q ss_pred HHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHH-hcCCCccch
Q 014945 264 ALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDL-LTQNYKKSI 342 (415)
Q Consensus 264 ~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~l-l~~~~~~~v 342 (415)
++........+.- .|+ .|+...+.-....+..+...+..-....+.....+++ .++.. +.|= +..+
T Consensus 494 AlqE~VGR~~n~p-----~Gi--~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~-----~L~t~Kv~HW-d~~i 560 (1133)
T KOG1943|consen 494 ALQENVGRQGNFP-----HGI--SLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFN-----HLLTKKVCHW-DVKI 560 (1133)
T ss_pred HHHHHhccCCCCC-----Cch--hhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHH-----HHHhcccccc-cHHH
Confidence 8876653322110 011 1222222223345556655565555555555554444 22222 4555 7889
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhC
Q 014945 343 KKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 397 (415)
Q Consensus 343 ~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~ 397 (415)
|..++|+|.++....|+ ....+.++.+++.....+...+.-+..+.+.++.
T Consensus 561 relaa~aL~~Ls~~~pk----~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~ 611 (1133)
T KOG1943|consen 561 RELAAYALHKLSLTEPK----YLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIG 611 (1133)
T ss_pred HHHHHHHHHHHHHhhHH----hhcccchhhhhhhhcCCChHHhhhhHHHHHHHHH
Confidence 99999999998765444 3345678888888888888877666666665553
No 138
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.70 E-value=0.0091 Score=60.95 Aligned_cols=230 Identities=11% Similarity=0.080 Sum_probs=150.7
Q ss_pred CCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhc---cchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHH
Q 014945 169 PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN---EHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPA 245 (415)
Q Consensus 169 ~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~---~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~ 245 (415)
.+..+|..+...|..++...+ +.....+ .+..+.+.+. ++.....+...+.+|..|....+......+...+|-
T Consensus 666 ~~~~vQkK~yrlL~~l~~~~s-~~~~~~q--~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~E 742 (1176)
T KOG1248|consen 666 SSTKVQKKAYRLLEELSSSPS-GEGLVEQ--RIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPE 742 (1176)
T ss_pred ccHHHHHHHHHHHHHHhcCCc-hhhHHHH--HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 478899999999999987632 2222211 2333333332 445667888889999999887664444555566665
Q ss_pred HHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHc----------CcHHHHHHhcCCCChhhHHHHHHHHHHhhcCCh
Q 014945 246 LERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA----------GVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD 315 (415)
Q Consensus 246 l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~----------~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~ 315 (415)
++-.+++.|...+..+..+|..++. ++...+. .+++.+...+..+...+....+.+++.+.....
T Consensus 743 vIL~~Ke~n~~aR~~Af~lL~~i~~-----i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~ 817 (1176)
T KOG1248|consen 743 VILSLKEVNVKARRNAFALLVFIGA-----IQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFK 817 (1176)
T ss_pred HHHhcccccHHHHhhHHHHHHHHHH-----HHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHh
Confidence 5555577888899999888888872 1111111 233444444444444444444666777665433
Q ss_pred HHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHH
Q 014945 316 MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNA 395 (415)
Q Consensus 316 ~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl 395 (415)
.......-.++++.+.-+|.+. ++.+++.|...+.-++...|+..-.-....+++.+..+.++..-.++..+-..|..+
T Consensus 818 ~~ld~~~l~~li~~V~~~L~s~-sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekL 896 (1176)
T KOG1248|consen 818 NILDDETLEKLISMVCLYLASN-SREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKL 896 (1176)
T ss_pred ccccHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 2222222335677777888888 999999999999999986554332222233899999988888899999999999999
Q ss_pred hCCCCHHHHHHH
Q 014945 396 TSGGSNEQIKYK 407 (415)
Q Consensus 396 ~~~~~~~~~~~l 407 (415)
......+.++.+
T Consensus 897 irkfg~~eLe~~ 908 (1176)
T KOG1248|consen 897 IRKFGAEELESF 908 (1176)
T ss_pred HHHhCHHHHHhh
Confidence 987777766554
No 139
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.64 E-value=0.00045 Score=50.20 Aligned_cols=68 Identities=16% Similarity=0.221 Sum_probs=57.4
Q ss_pred hHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcC-CCccchHHHHHHHHHHHhcCCHHHHHHHHH
Q 014945 299 VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQ-NYKKSIKKEACWTISNITAGNVNQIQAIIE 366 (415)
Q Consensus 299 v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~ 366 (415)
++...+++|||++..++.....+.+.|++|.++....- ..+|.+|+.|.|++.|++.+++++...+.+
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 45678899999999999888999999999999986632 238899999999999999999987665543
No 140
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.62 E-value=0.0059 Score=55.05 Aligned_cols=191 Identities=17% Similarity=0.214 Sum_probs=124.8
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHH---hcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCC--C
Q 014945 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVI---QSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASG--T 146 (415)
Q Consensus 72 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~---~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~--~ 146 (415)
.+...+..+.......+..++..+.+++... ....++ ...++..+.+.++.+. .+-+..|+.+++-++-. .
T Consensus 44 ~L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~---~~~d~v~~~~~tL~~~~~k~lkkg~-~~E~~lA~~~l~Ll~ltlg~ 119 (309)
T PF05004_consen 44 KLKEAIDLLTEKSSSTREAALEALIRALSSR---YLPDFVEDRRETLLDALLKSLKKGK-SEEQALAARALALLALTLGA 119 (309)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc---ccHHHHHHHHHHHHHHHHHHhccCC-HHHHHHHHHHHHHHhhhcCC
Confidence 3677788888777899999999999988643 222333 2346778888888887 56777787877766543 2
Q ss_pred chhhHHHHhCCChHHHHHhhCCC--CHHHHHHHHHHHHHhcC---CCchhHHHHHhcCChHHHHH--Hhcc---------
Q 014945 147 SENTRVVIDHGAVPIFVRLLSSP--TDDVREQAVWALGNVAG---DSPKCRDLVLSNGALMPLLA--QFNE--------- 210 (415)
Q Consensus 147 ~~~~~~~~~~g~i~~L~~ll~~~--~~~v~~~a~~~L~nl~~---~~~~~~~~~~~~g~i~~L~~--~l~~--------- 210 (415)
.+....+++ ...|.|.+.+.+. ...++..++.+|+-++. ..+......++ .+..+.. ....
T Consensus 120 g~~~~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~ 196 (309)
T PF05004_consen 120 GEDSEEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAA 196 (309)
T ss_pred CccHHHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccC
Confidence 234444444 4678888888764 45677777777777652 22221111111 2332211 1211
Q ss_pred chhHhHHHHHHHHHHHhhhCCCCCc-hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhc
Q 014945 211 HAKLSMLRNATWTLSNFCRGKPQPL-FEQTRPALPALERLIHSNDDEVLTDACWALSYLS 269 (415)
Q Consensus 211 ~~~~~~~~~a~~~l~~l~~~~~~~~-~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~ 269 (415)
.+++.+...|+.+++-|...-+... .......+|.|..+|.++|.+|+..|-.+|.-+.
T Consensus 197 ~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~ 256 (309)
T PF05004_consen 197 EDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLY 256 (309)
T ss_pred CCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 1235688888888888876654322 2344678999999999999999999999888764
No 141
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=0.0028 Score=59.50 Aligned_cols=134 Identities=16% Similarity=0.214 Sum_probs=99.8
Q ss_pred HHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHh-cCCCChhhHHHHHHHHHHhhcCChHHHHHHHH
Q 014945 245 ALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL-LRHPSPSVLIPALRTVGNIVTGDDMQTQCIIN 323 (415)
Q Consensus 245 ~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~l-L~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~ 323 (415)
.+-+++.+.|+-.+.....+++.--.+.. +.|++..++.. .++.+.+|+..|..+||-+|..+.
T Consensus 520 ~I~ell~d~ds~lRy~G~fs~alAy~GTg-------n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~-------- 584 (926)
T COG5116 520 YINELLYDKDSILRYNGVFSLALAYVGTG-------NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR-------- 584 (926)
T ss_pred HHHHHhcCchHHhhhccHHHHHHHHhcCC-------cchhHhhhheeecccCchHHHHHHHHheeeeEecCc--------
Confidence 56677788888888877665543222211 13567777777 677889999999999999988654
Q ss_pred CCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCH
Q 014945 324 HQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSN 401 (415)
Q Consensus 324 ~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~ 401 (415)
..++..+++|..+.++.||...+.+|+-.|+++..+. .+..|-.++.+...-||+.|+.+++-+...+++
T Consensus 585 -~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~-------a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~ 654 (926)
T COG5116 585 -DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV-------ATDILEALMYDTNDFVRQSAMIAVGMILMQCNP 654 (926)
T ss_pred -chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH-------HHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCc
Confidence 4567788888777799999999999999998755543 345555667777888999999999998876654
No 142
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.58 E-value=0.037 Score=54.02 Aligned_cols=248 Identities=17% Similarity=0.111 Sum_probs=150.4
Q ss_pred HhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCC
Q 014945 121 EFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGA 200 (415)
Q Consensus 121 ~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~ 200 (415)
+=|++++ +-+|-.+++.|+.+=. ++-.+ ..+|.+...|.+.+.-+|..|+.++..|-..... .+- .+
T Consensus 106 kDLQHPN-EyiRG~TLRFLckLkE--~ELle-----pl~p~IracleHrhsYVRrNAilaifsIyk~~~~---L~p--Da 172 (948)
T KOG1058|consen 106 KDLQHPN-EYIRGSTLRFLCKLKE--PELLE-----PLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEH---LIP--DA 172 (948)
T ss_pred hhccCch-HhhcchhhhhhhhcCc--HHHhh-----hhHHHHHHHHhCcchhhhhhhheeehhHHhhhhh---hcC--Ch
Confidence 3455565 6677677776666544 32222 3577778888888888888888888877544221 111 13
Q ss_pred hHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHh---hcCCChhHHHHHHHHHHHhccCChHHHH
Q 014945 201 LMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERL---IHSNDDEVLTDACWALSYLSDGTNDKIQ 277 (415)
Q Consensus 201 i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~l---L~~~d~~v~~~a~~~l~~l~~~~~~~~~ 277 (415)
-+.+-..|....++...++|...|...-.. .++..+... +.+-++..+......|...+...+...
T Consensus 173 peLi~~fL~~e~DpsCkRNAFi~L~~~D~E----------rAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~- 241 (948)
T KOG1058|consen 173 PELIESFLLTEQDPSCKRNAFLMLFTTDPE----------RALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEK- 241 (948)
T ss_pred HHHHHHHHHhccCchhHHHHHHHHHhcCHH----------HHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHh-
Confidence 333444554666777788777665544321 122222222 223345555566666666665444332
Q ss_pred HHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCC
Q 014945 278 AVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN 357 (415)
Q Consensus 278 ~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~ 357 (415)
...+..+..+|.+.++.++-.|..+|-++...+. ... -....++.++....+-.++--..--|..+.+.+
T Consensus 242 ----~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~-alk-----~Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~ 311 (948)
T KOG1058|consen 242 ----ARYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPT-ALK-----AAASTYIDLLVKESDNNVKLIVLDRLSELKALH 311 (948)
T ss_pred ----hHHHHHHHHHHhcCCchhhhhhcceEEEccCCHH-HHH-----HHHHHHHHHHHhccCcchhhhhHHHHHHHhhhh
Confidence 2456788889988888888888888887776433 222 123456666544435566665555566655433
Q ss_pred HHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCHHHHHHH
Q 014945 358 VNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKYK 407 (415)
Q Consensus 358 ~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l 407 (415)
.... .|++-.++.+|..+|.++++.++.....++..-+-+++-.+
T Consensus 312 ~~il-----~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNvediv~~ 356 (948)
T KOG1058|consen 312 EKIL-----QGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQF 356 (948)
T ss_pred HHHH-----HHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHHHHHH
Confidence 3322 23566778888999999999999999999877666655433
No 143
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.57 E-value=0.0045 Score=60.26 Aligned_cols=260 Identities=16% Similarity=0.149 Sum_probs=139.4
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHH-
Q 014945 74 PAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRV- 152 (415)
Q Consensus 74 ~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~- 152 (415)
+-+=+++.+....+...|+.++..+.. ...+.+.. .+..|--+++++. ..+|..|.++|..+|...|+....
T Consensus 248 ~fl~s~l~~K~emV~~EaArai~~l~~----~~~r~l~p--avs~Lq~flssp~-~~lRfaAvRtLnkvAm~~P~~v~~c 320 (865)
T KOG1078|consen 248 PFLESCLRHKSEMVIYEAARAIVSLPN----TNSRELAP--AVSVLQLFLSSPK-VALRFAAVRTLNKVAMKHPQAVTVC 320 (865)
T ss_pred HHHHHHHhchhHHHHHHHHHHHhhccc----cCHhhcch--HHHHHHHHhcCcH-HHHHHHHHHHHHHHHHhCCcccccc
Confidence 444456667888899999999988743 33333333 5778888889988 899999999999999765543211
Q ss_pred ------HHh-C---CChHHHHHhhCCCCH----HHHHHHHHHHHHhcCCCch-----hHHHH-----HhcCChHHHHHHh
Q 014945 153 ------VID-H---GAVPIFVRLLSSPTD----DVREQAVWALGNVAGDSPK-----CRDLV-----LSNGALMPLLAQF 208 (415)
Q Consensus 153 ------~~~-~---g~i~~L~~ll~~~~~----~v~~~a~~~L~nl~~~~~~-----~~~~~-----~~~g~i~~L~~~l 208 (415)
++. . -...++..+|....+ .+..+......+++.+... .+... ...+.+..|.++|
T Consensus 321 N~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL~~~L 400 (865)
T KOG1078|consen 321 NLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFLSNML 400 (865)
T ss_pred chhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 111 0 012233333433222 2333333333333322110 00000 1112233444444
Q ss_pred ccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHH
Q 014945 209 NEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRL 288 (415)
Q Consensus 209 ~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L 288 (415)
.+....+..+....++..+....+..... .+..|..++.+. +...-+.+.+..+....+.. ...+..+..+
T Consensus 401 r~eGg~e~K~aivd~Ii~iie~~pdsKe~----~L~~LCefIEDc--e~~~i~~rILhlLG~EgP~a---~~Pskyir~i 471 (865)
T KOG1078|consen 401 REEGGFEFKRAIVDAIIDIIEENPDSKER----GLEHLCEFIEDC--EFTQIAVRILHLLGKEGPKA---PNPSKYIRFI 471 (865)
T ss_pred HhccCchHHHHHHHHHHHHHHhCcchhhH----HHHHHHHHHHhc--cchHHHHHHHHHHhccCCCC---CCcchhhHHH
Confidence 44444455555555555555543332222 222333333221 12223333333333221100 0112234445
Q ss_pred HHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhc
Q 014945 289 VELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 355 (415)
Q Consensus 289 ~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~ 355 (415)
.....-.+..++..|..++.++..+.+.... .+...+..++.+. +..+|..|.+.+.++-.
T Consensus 472 yNRviLEn~ivRaaAv~alaKfg~~~~~l~~-----sI~vllkRc~~D~-DdevRdrAtf~l~~l~~ 532 (865)
T KOG1078|consen 472 YNRVILENAIVRAAAVSALAKFGAQDVVLLP-----SILVLLKRCLNDS-DDEVRDRATFYLKNLEE 532 (865)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHhcCCCCccc-----cHHHHHHHHhcCc-hHHHHHHHHHHHHHhhh
Confidence 5555456778999999999999965553222 4455677788888 99999999999998873
No 144
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.54 E-value=0.016 Score=59.23 Aligned_cols=243 Identities=12% Similarity=0.100 Sum_probs=154.4
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHh--CCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCc-hhHHHH
Q 014945 119 FIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVID--HGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP-KCRDLV 195 (415)
Q Consensus 119 L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~--~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~-~~~~~~ 195 (415)
+.....+.++..+|..+..+|..++.. +.......+ ..+...|..-+++.....+...+.+|..|....+ +..+.+
T Consensus 658 v~~~~e~~~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i 736 (1176)
T KOG1248|consen 658 VDPEFENSSSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLI 736 (1176)
T ss_pred hhHHhhccccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 334444443389999999999999986 332222211 1234445555555666777788888888775554 222332
Q ss_pred HhcCChHHHHHHhccchhHhHHHHHHHHHHHhh--hCC----CCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhc
Q 014945 196 LSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC--RGK----PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLS 269 (415)
Q Consensus 196 ~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~--~~~----~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~ 269 (415)
.. .++.++-.+ +..+...++++..+|..++ ... ..+....+..+++.|...+-.+...+....+-++..+.
T Consensus 737 ~k--~I~EvIL~~-Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il 813 (1176)
T KOG1248|consen 737 PK--LIPEVILSL-KEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHIL 813 (1176)
T ss_pred HH--HHHHHHHhc-ccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHH
Confidence 22 344444444 6678888888888888887 221 22235566777777776655444444444355565555
Q ss_pred cCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHH
Q 014945 270 DGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWT 349 (415)
Q Consensus 270 ~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~ 349 (415)
....+....-.-.++++.+..+|.+.++.++..|++.+..++...++..-......+++.+..++++. .-.+|..+-..
T Consensus 814 ~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~-k~~~r~Kvr~L 892 (1176)
T KOG1248|consen 814 QEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDH-KIKVRKKVRLL 892 (1176)
T ss_pred HHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhh-hHHHHHHHHHH
Confidence 33222222222235677777888999999999999999999988775444333445788888888877 78888888888
Q ss_pred HHHHhc-CCHHHHHHHHH
Q 014945 350 ISNITA-GNVNQIQAIIE 366 (415)
Q Consensus 350 l~nl~~-~~~~~~~~l~~ 366 (415)
+-.++. ...+.++.+..
T Consensus 893 lekLirkfg~~eLe~~~p 910 (1176)
T KOG1248|consen 893 LEKLIRKFGAEELESFLP 910 (1176)
T ss_pred HHHHHHHhCHHHHHhhCH
Confidence 888886 34555666655
No 145
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.53 E-value=0.007 Score=49.97 Aligned_cols=93 Identities=24% Similarity=0.295 Sum_probs=75.5
Q ss_pred hHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhc
Q 014945 213 KLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL 292 (415)
Q Consensus 213 ~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL 292 (415)
++.++.+++-+++-|+...| ..+.+.+|.+...|.++++.||..|+.++.+|...+.-... ..++..++..+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~----~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k----~~l~~~~l~~l 72 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYP----NLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVK----GQLFSRILKLL 72 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCc----HHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeeh----hhhhHHHHHHH
Confidence 46788899999999987654 34467789999999999999999999999999865432211 23347888888
Q ss_pred CCCChhhHHHHHHHHHHhhcC
Q 014945 293 RHPSPSVLIPALRTVGNIVTG 313 (415)
Q Consensus 293 ~~~~~~v~~~a~~~l~nl~~~ 313 (415)
.++++.++..|..++..+...
T Consensus 73 ~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 73 VDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred cCCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999876
No 146
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.53 E-value=0.028 Score=56.47 Aligned_cols=320 Identities=15% Similarity=0.118 Sum_probs=167.9
Q ss_pred CHHHHHHHHHHHHHHhccC-CCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHH
Q 014945 84 DRNIQLDATTQFRKLLSIE-RSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIF 162 (415)
Q Consensus 84 ~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L 162 (415)
++.....|+..+..+.+.- +..+.+...+.=+++.+...++++- --+|..|+|+++.+++.+-.....+. .++...
T Consensus 431 ~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~-g~Lrarac~vl~~~~~~df~d~~~l~--~ale~t 507 (1010)
T KOG1991|consen 431 NPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPY-GYLRARACWVLSQFSSIDFKDPNNLS--EALELT 507 (1010)
T ss_pred ChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCch-hHHHHHHHHHHHHHHhccCCChHHHH--HHHHHH
Confidence 3444555666666554321 2344444455556677777888877 78999999999999963322222222 356666
Q ss_pred HHhhC-CCCHHHHHHHHHHHHHhcCCCchhHHHHHh--cCChHHHHHHhccch----------------------hHhHH
Q 014945 163 VRLLS-SPTDDVREQAVWALGNVAGDSPKCRDLVLS--NGALMPLLAQFNEHA----------------------KLSML 217 (415)
Q Consensus 163 ~~ll~-~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~--~g~i~~L~~~l~~~~----------------------~~~~~ 217 (415)
.+.|. +.+-.|+-.|+-+|..+..+.+.....+-. .+.++.|+.+.+... -.++.
T Consensus 508 ~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~vme~iV~~fseElsPfA~eL~ 587 (1010)
T KOG1991|consen 508 HNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLTNVMEKIVCKFSEELSPFAVELC 587 (1010)
T ss_pred HHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhhchhHHHHH
Confidence 66666 667788999999999988776643222211 012223333321111 11333
Q ss_pred HHHHHHHHHhhhC----CC--CCchhhhhchHHHHHHhhcC--CChhH-----------------------HHHHHHHHH
Q 014945 218 RNATWTLSNFCRG----KP--QPLFEQTRPALPALERLIHS--NDDEV-----------------------LTDACWALS 266 (415)
Q Consensus 218 ~~a~~~l~~l~~~----~~--~~~~~~~~~~l~~l~~lL~~--~d~~v-----------------------~~~a~~~l~ 266 (415)
.+...++..+... .+ ........|++..+..+|.+ +.+++ -+.++..+.
T Consensus 588 q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~~~l~vi~~iL~~~i~dfyeE~~ei~~ 667 (1010)
T KOG1991|consen 588 QNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQLEPIVLPVIGFILKNDITDFYEELLEIVS 667 (1010)
T ss_pred HHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 3444444444442 11 11222335666555554432 12222 222333332
Q ss_pred HhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCC-----ChHHHHHHhcCC-Ccc
Q 014945 267 YLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQ-----ALPCLLDLLTQN-YKK 340 (415)
Q Consensus 267 ~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~-----~l~~L~~ll~~~-~~~ 340 (415)
+++....+..-.+ -|+++.+.+.+....-.......-+|.|+.+.... .+...+ ++..+..++.+. ...
T Consensus 668 ~~t~~~~~Isp~m--W~ll~li~e~~~~~~~dyf~d~~~~l~N~vt~g~~---~~~s~~~y~~il~~i~~~~l~~e~~~D 742 (1010)
T KOG1991|consen 668 SLTFLSKEISPIM--WGLLELILEVFQDDGIDYFTDMMPALHNYVTYGTP---SLLSNPDYLQILLEIIKKVLTSENGED 742 (1010)
T ss_pred hhhhhhcccCHHH--HHHHHHHHHHHhhhhHHHHHHHHHHHhhheeeCch---hhhccchHHHHHHHHHHHHHcCCCCch
Confidence 2222111110000 14556666666666666667777788887763321 122221 234445555542 133
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhcc--CCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhCCC
Q 014945 341 SIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN--AEFEIKKEAAWAISNATSGGSNEQIKYKFFYVSRTC 415 (415)
Q Consensus 341 ~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~--~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~~g~ 415 (415)
.=...||..+.-+.-.....+++.+.. .+...+..+.. .+...+..++..+.|.....+...+..| -+.|+
T Consensus 743 ~d~~~a~kLle~iiL~~kg~~dq~ipl-f~~~a~~~l~~~~e~s~~~~~~leVvinalyynP~ltL~iL---e~~~~ 815 (1010)
T KOG1991|consen 743 SDCESACKLLEVIILNCKGLLDQYIPL-FLELALSRLTREVETSELRVMLLEVVINALYYNPKLTLGIL---ENQGF 815 (1010)
T ss_pred HHHHHHHHHHHHHHHHhcCcHhhHhHH-HHHHHHHHHhccccchHHHHHHHHHHHHHHHcCcHHHHHHH---HHcCC
Confidence 344557777666654322234443332 33333344444 5667888899999888888888888888 66663
No 147
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=97.51 E-value=0.0008 Score=66.38 Aligned_cols=188 Identities=19% Similarity=0.163 Sum_probs=129.9
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHH--------HHh----cCChHHHHHHhccchhHhHHHHHHHHHHH
Q 014945 159 VPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDL--------VLS----NGALMPLLAQFNEHAKLSMLRNATWTLSN 226 (415)
Q Consensus 159 i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~--------~~~----~g~i~~L~~~l~~~~~~~~~~~a~~~l~~ 226 (415)
...++.+|++ +++-..+..++.-+..|++.++.. +.+ ..++|.+++.+ .......+.+...+|++
T Consensus 817 a~klld~Ls~--~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~~ivP~l~~~~-~t~~~~~K~~yl~~Lsh 893 (1030)
T KOG1967|consen 817 AEKLLDLLSG--PSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFCDIVPILVSKF-ETAPGSQKHNYLEALSH 893 (1030)
T ss_pred HHHHHHhcCC--ccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHHhhHHHHHHHh-ccCCccchhHHHHHHHH
Confidence 4456667765 344456667777776665533221 122 23577777777 35566677888888888
Q ss_pred hhhCCCCCc-hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCC---hhhHHH
Q 014945 227 FCRGKPQPL-FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPS---PSVLIP 302 (415)
Q Consensus 227 l~~~~~~~~-~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~---~~v~~~ 302 (415)
+..+-|... ......++|.|++.|.-+|..++..++.++.-+....+.....-++ -+++.++.+-.+++ ..+|..
T Consensus 894 Vl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~-Tlvp~lLsls~~~~n~~~~VR~~ 972 (1030)
T KOG1967|consen 894 VLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLS-TLVPYLLSLSSDNDNNMMVVRED 972 (1030)
T ss_pred HHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHh-HHHHHHHhcCCCCCcchhHHHHH
Confidence 887654432 3345678899999999999999999999998887655544332332 36777777766555 579999
Q ss_pred HHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHH
Q 014945 303 ALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTIS 351 (415)
Q Consensus 303 a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~ 351 (415)
|+.+|+.+....|...-......++..+.+.|.++ ..-||++|..+=.
T Consensus 973 ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDk-KRlVR~eAv~tR~ 1020 (1030)
T KOG1967|consen 973 ALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDK-KRLVRKEAVDTRQ 1020 (1030)
T ss_pred HHHHHHHHhccCCCcccccccHHHHHHhhhccCcH-HHHHHHHHHHHhh
Confidence 99999999985553333344446788899999998 8899999987643
No 148
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=97.50 E-value=0.032 Score=53.72 Aligned_cols=254 Identities=12% Similarity=0.096 Sum_probs=136.6
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHH
Q 014945 117 PRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVL 196 (415)
Q Consensus 117 ~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~ 196 (415)
..++...+. + ...+..|+..+......-|+..+. ++..++.+..+++..||.+|+..|..+|.+.++....
T Consensus 26 ~~il~~~kg-~-~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~k-- 96 (556)
T PF05918_consen 26 KEILDGVKG-S-PKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSK-- 96 (556)
T ss_dssp HHHHHGGGS---HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHH--
T ss_pred HHHHHHccC-C-HHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhH--
Confidence 344555553 4 789999999999999887777655 5778999999999999999999999999998765444
Q ss_pred hcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhc---CCChhHHHHHHHHHHH-hccCC
Q 014945 197 SNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH---SNDDEVLTDACWALSY-LSDGT 272 (415)
Q Consensus 197 ~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~---~~d~~v~~~a~~~l~~-l~~~~ 272 (415)
+...|+++| ...++.-...+-++|..+...++ .+.+..+...+. +.|+.+++.++..|.. +-.-.
T Consensus 97 ---vaDvL~QlL-~tdd~~E~~~v~~sL~~ll~~d~-------k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~ 165 (556)
T PF05918_consen 97 ---VADVLVQLL-QTDDPVELDAVKNSLMSLLKQDP-------KGTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLK 165 (556)
T ss_dssp ---HHHHHHHHT-T---HHHHHHHHHHHHHHHHH-H-------HHHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-
T ss_pred ---HHHHHHHHH-hcccHHHHHHHHHHHHHHHhcCc-------HHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCc
Confidence 456788888 56666666666677777765432 344444444443 5678899998877743 22111
Q ss_pred hHHHH--HHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhc----CChHHHHHHHHCCChHHHHHHh------cCCCcc
Q 014945 273 NDKIQ--AVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT----GDDMQTQCIINHQALPCLLDLL------TQNYKK 340 (415)
Q Consensus 273 ~~~~~--~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~----~~~~~~~~~~~~~~l~~L~~ll------~~~~~~ 340 (415)
.+... .=.+.-++..+...|.+-...--...+.+|..+-. .+....+.+ ++.+.... ... ++
T Consensus 166 ~~~~~p~~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qeL-----v~ii~eQa~Ld~~f~~s-D~ 239 (556)
T PF05918_consen 166 PELLTPQKEMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKIYGGKQTIEGRQEL-----VDIIEEQADLDQPFDPS-DP 239 (556)
T ss_dssp TTTS---HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG---GSSHHHHHHH-----HHHHHHHHTTTS---SS-SH
T ss_pred HHHhhchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCccccccCChHHHHHH-----HHHHHHHhccCCCCCCc-CH
Confidence 11111 11122245667777765444444445555655554 223333433 33344332 112 33
Q ss_pred chHHHHHHHHHH----Hhc--CCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCH
Q 014945 341 SIKKEACWTISN----ITA--GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSN 401 (415)
Q Consensus 341 ~v~~~a~~~l~n----l~~--~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~ 401 (415)
..-.....++.. +.. .+.....++++. ++|.+-++ +.+.+..-+.++..++..+..
T Consensus 240 e~Idrli~C~~~Alp~fs~~v~Sskfv~y~~~k-vlP~l~~l----~e~~kl~lLk~lAE~s~~~~~ 301 (556)
T PF05918_consen 240 ESIDRLISCLRQALPFFSRGVSSSKFVNYMCEK-VLPKLSDL----PEDRKLDLLKLLAELSPFCGA 301 (556)
T ss_dssp HHHHHHHHHHHHHGGG-BTTB--HHHHHHHHHH-TCCCTT---------HHHHHHHHHHHHHTT---
T ss_pred HHHHHHHHHHHHhhHHhcCCCChHHHHHHHHHH-hcCChhhC----ChHHHHHHHHHHHHHcCCCCc
Confidence 333333333222 222 244445555554 77766555 456677788888888876653
No 149
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.49 E-value=0.019 Score=55.94 Aligned_cols=149 Identities=14% Similarity=0.125 Sum_probs=93.5
Q ss_pred hhchHHHHHHhhcCCChhHHHHHHHHHHHhccCCh-HHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHH
Q 014945 239 TRPALPALERLIHSNDDEVLTDACWALSYLSDGTN-DKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQ 317 (415)
Q Consensus 239 ~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~-~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~ 317 (415)
..+++--++.+|.++|-+++..++.....|+.... +.+-.++...+...--. =...+...|..-+.++...+...++.
T Consensus 315 l~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~-e~d~~~~yRqlLiktih~cav~Fp~~ 393 (948)
T KOG1058|consen 315 LQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNE-ESDDNGKYRQLLIKTIHACAVKFPEV 393 (948)
T ss_pred HHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhcccc-ccccchHHHHHHHHHHHHHhhcChHH
Confidence 34555566778889999999999988877764322 22211222111111100 01234567888889999888877765
Q ss_pred HHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhcc-CCHHHHHHHHHHHHHHh
Q 014945 318 TQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN-AEFEIKKEAAWAISNAT 396 (415)
Q Consensus 318 ~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~-~~~~v~~~a~~aL~nl~ 396 (415)
.. .+++.+++++.+. ++.........+.......|.-+.. ++..|++-+.. ...++..-|+|.++..+
T Consensus 394 aa-----tvV~~ll~fisD~-N~~aas~vl~FvrE~iek~p~Lr~~-----ii~~l~~~~~~irS~ki~rgalwi~GeYc 462 (948)
T KOG1058|consen 394 AA-----TVVSLLLDFISDS-NEAAASDVLMFVREAIEKFPNLRAS-----IIEKLLETFPQIRSSKICRGALWILGEYC 462 (948)
T ss_pred HH-----HHHHHHHHHhccC-CHHHHHHHHHHHHHHHHhCchHHHH-----HHHHHHHhhhhhcccccchhHHHHHHHHH
Confidence 44 5688999999888 7765555555555555444443332 45555555543 56778889999999998
Q ss_pred CCC
Q 014945 397 SGG 399 (415)
Q Consensus 397 ~~~ 399 (415)
...
T Consensus 463 e~~ 465 (948)
T KOG1058|consen 463 EGL 465 (948)
T ss_pred hhh
Confidence 763
No 150
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=97.46 E-value=0.0065 Score=55.08 Aligned_cols=202 Identities=12% Similarity=0.100 Sum_probs=139.5
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchh-----HHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHH
Q 014945 152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC-----RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSN 226 (415)
Q Consensus 152 ~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~-----~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~ 226 (415)
.+...+.+..|+..|..-+-+.+..+....+++....... .+.+.. ..-..+..++....++++.-.+...|..
T Consensus 71 Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~-~~peil~~L~~gy~~~dial~~g~mlRe 149 (335)
T PF08569_consen 71 EIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLER-HRPEILDILLRGYENPDIALNCGDMLRE 149 (335)
T ss_dssp HHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT---THHHHHHHHGGGSTTTHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHh-CCHHHHHHHHHHhcCccccchHHHHHHH
Confidence 3445578888999998888889999999999987654332 223332 1123333333333466677777777777
Q ss_pred hhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHc---CcHHHHHHhcCCCChhhHHHH
Q 014945 227 FCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA---GVCPRLVELLRHPSPSVLIPA 303 (415)
Q Consensus 227 l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~---~~i~~L~~lL~~~~~~v~~~a 303 (415)
.++...-.......+.+-.+...++.++-+|..+|..++..+..........++.. .++.....+|.+++--++..+
T Consensus 150 c~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqs 229 (335)
T PF08569_consen 150 CIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQS 229 (335)
T ss_dssp HTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHH
T ss_pred HHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhh
Confidence 77664333333345566677888889999999999999999776665555555555 456788888999999999999
Q ss_pred HHHHHHhhcCChHH---HHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhc
Q 014945 304 LRTVGNIVTGDDMQ---TQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 355 (415)
Q Consensus 304 ~~~l~nl~~~~~~~---~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~ 355 (415)
+..||.+....... ...+-+..-+..++.+|.+. +..++-+|..++--+++
T Consensus 230 lkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~-sk~Iq~eAFhvFKvFVA 283 (335)
T PF08569_consen 230 LKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDK-SKNIQFEAFHVFKVFVA 283 (335)
T ss_dssp HHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCc-chhhhHHHHHHHHHHHh
Confidence 99999999755422 23333446688999999999 99999999999998887
No 151
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=97.44 E-value=0.0033 Score=57.84 Aligned_cols=267 Identities=15% Similarity=0.099 Sum_probs=145.5
Q ss_pred hHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhc-----CCCchhHHHHHhcCChHH
Q 014945 129 PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVA-----GDSPKCRDLVLSNGALMP 203 (415)
Q Consensus 129 ~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~-----~~~~~~~~~~~~~g~i~~ 203 (415)
..++.+++.+|..++..-.-.+..+++ ....+...+....+.+...+..++..+- .+.|+.-+.-...|.+-.
T Consensus 269 s~~rle~~qvl~~~a~~~~~~~~~~~~--l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~ 346 (728)
T KOG4535|consen 269 SPMRLEALQVLTLLARYFSMTQAYLME--LGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWT 346 (728)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHH
Confidence 467888888888877642222222222 2233333455678888888888887764 222322111112221111
Q ss_pred ------HHHHhccchhHhHHHHHHHHHHHhhhCC-CCCchhhhhchHHHHH-HhhcCCChhHHHHHHHHHHHhccCChHH
Q 014945 204 ------LLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALE-RLIHSNDDEVLTDACWALSYLSDGTNDK 275 (415)
Q Consensus 204 ------L~~~l~~~~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~l~~l~-~lL~~~d~~v~~~a~~~l~~l~~~~~~~ 275 (415)
.-....++.....+..+|.+++++.... ..-+... ....+.+. .+=.+.+.-++..|++++.-+.-+....
T Consensus 347 ~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~-~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr 425 (728)
T KOG4535|consen 347 MMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDR-QTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLR 425 (728)
T ss_pred HHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcc-hhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchh
Confidence 1122223345567788888888887553 1111111 12222222 2222334557888888888877666544
Q ss_pred HHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhc----CCh---HHHHHHHHCCChHHHHHHh--cCCCccchHHHH
Q 014945 276 IQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT----GDD---MQTQCIINHQALPCLLDLL--TQNYKKSIKKEA 346 (415)
Q Consensus 276 ~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~----~~~---~~~~~~~~~~~l~~L~~ll--~~~~~~~v~~~a 346 (415)
.....-.+....+...|.+..-..+..+.|++|||.. +.+ .....+.. -.+..++..- .+..+++|+..+
T Consensus 426 ~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg-~ll~~~~~~A~~~~Ad~dkV~~na 504 (728)
T KOG4535|consen 426 QDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSG-LLLLKMLRSAIEASADKDKVKSNA 504 (728)
T ss_pred hhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHH-HHHHHHHHHHHHhhhhhhhhhhHH
Confidence 4444444566777777777777889999999999974 222 22222222 1223333322 222367899999
Q ss_pred HHHHHHHhcCC---HHHHHHHHHcCCHHHHHHH-hccCCHHHHHHHHHHHHHHhCCC
Q 014945 347 CWTISNITAGN---VNQIQAIIEAGIIGPLVNL-LLNAEFEIKKEAAWAISNATSGG 399 (415)
Q Consensus 347 ~~~l~nl~~~~---~~~~~~l~~~~~i~~L~~~-l~~~~~~v~~~a~~aL~nl~~~~ 399 (415)
..+|+|+..-- .+.....+..|-+..+... ......+|+=+||++++|+..+-
T Consensus 505 vraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~ 561 (728)
T KOG4535|consen 505 VRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNP 561 (728)
T ss_pred HHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCc
Confidence 99999987520 0101111112222222222 23356789999999999998663
No 152
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=97.43 E-value=0.041 Score=46.95 Aligned_cols=197 Identities=19% Similarity=0.284 Sum_probs=131.2
Q ss_pred hcCchHHHHHhhcCCC-ChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCC---
Q 014945 112 QSGVVPRFIEFLSRDD-FPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGD--- 187 (415)
Q Consensus 112 ~~g~i~~L~~ll~~~~-~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~--- 187 (415)
....+|.|+..+.+.+ .+.+|.+|+.+|+.+.. + +..+.+-++.+++-..+++.+..++..+--.
T Consensus 65 ~~~Av~~l~~vl~desq~pmvRhEAaealga~~~--~---------~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~ 133 (289)
T KOG0567|consen 65 DEDAVPVLVEVLLDESQEPMVRHEAAEALGAIGD--P---------ESLEILTKYIKDPCKEVRETCELAIKRLEWKDII 133 (289)
T ss_pred cchhhHHHHHHhcccccchHHHHHHHHHHHhhcc--h---------hhHHHHHHHhcCCccccchHHHHHHHHHHHhhcc
Confidence 3456899998887643 37889999999998873 3 3467777777777788888877777766311
Q ss_pred ------------CchhHHHHHhcCChHHHHHHhccchhHhH-HHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCC
Q 014945 188 ------------SPKCRDLVLSNGALMPLLAQFNEHAKLSM-LRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSND 254 (415)
Q Consensus 188 ------------~~~~~~~~~~~g~i~~L~~~l~~~~~~~~-~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d 254 (415)
+|... ...+-+..+-..|.+.+.+.. +..+.+.|.|+-. ...+..+..-+..+.
T Consensus 134 ~~~~~~~p~~SvdPa~p---~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~----------EeaI~al~~~l~~~S 200 (289)
T KOG0567|consen 134 DKIANSSPYISVDPAPP---ANLSSVHELRAELLDETKPLFERYRAMFYLRNIGT----------EEAINALIDGLADDS 200 (289)
T ss_pred ccccccCccccCCCCCc---cccccHHHHHHHHHhcchhHHHHHhhhhHhhccCc----------HHHHHHHHHhcccch
Confidence 11111 111224444444423333332 3455555555532 345667778888888
Q ss_pred hhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcC--CCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHH
Q 014945 255 DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR--HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLD 332 (415)
Q Consensus 255 ~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~--~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ 332 (415)
.-.+..+..+++.+-.. -.++.|.+.|. ..++-+|..|+.+||.++.. ..++.|.+
T Consensus 201 alfrhEvAfVfGQl~s~-----------~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e-----------~~~~vL~e 258 (289)
T KOG0567|consen 201 ALFRHEVAFVFGQLQSP-----------AAIPSLIKVLLDETEHPMVRHEAAEALGAIADE-----------DCVEVLKE 258 (289)
T ss_pred HHHHHHHHHHHhhccch-----------hhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH-----------HHHHHHHH
Confidence 88999999999887421 23566777764 34678999999999999852 23667888
Q ss_pred HhcCCCccchHHHHHHHHHHHhc
Q 014945 333 LLTQNYKKSIKKEACWTISNITA 355 (415)
Q Consensus 333 ll~~~~~~~v~~~a~~~l~nl~~ 355 (415)
++.++ ++-|++.+..+|.-+-.
T Consensus 259 ~~~D~-~~vv~esc~valdm~ey 280 (289)
T KOG0567|consen 259 YLGDE-ERVVRESCEVALDMLEY 280 (289)
T ss_pred HcCCc-HHHHHHHHHHHHHHHHH
Confidence 89888 88888888888765543
No 153
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=97.39 E-value=0.0014 Score=60.17 Aligned_cols=187 Identities=21% Similarity=0.184 Sum_probs=111.4
Q ss_pred CCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCC----CCCchhhh---h
Q 014945 168 SPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK----PQPLFEQT---R 240 (415)
Q Consensus 168 ~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~----~~~~~~~~---~ 240 (415)
+.+.-++..|+++++-+.-+..-..+...-..+...++..+ .+.....+..+.|+++|++..- |....... .
T Consensus 402 ~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl-~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg 480 (728)
T KOG4535|consen 402 SKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSL-EDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSG 480 (728)
T ss_pred hHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHh-hhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHH
Confidence 34555777788888777655544445554445666666666 5556678899999999998542 33222221 1
Q ss_pred chHHHHHHhhc---CCChhHHHHHHHHHHHhccCChHHHHH---HHHcCcHHHHHHh-cCCCChhhHHHHHHHHHHhhcC
Q 014945 241 PALPALERLIH---SNDDEVLTDACWALSYLSDGTNDKIQA---VIEAGVCPRLVEL-LRHPSPSVLIPALRTVGNIVTG 313 (415)
Q Consensus 241 ~~l~~l~~lL~---~~d~~v~~~a~~~l~~l~~~~~~~~~~---~~~~~~i~~L~~l-L~~~~~~v~~~a~~~l~nl~~~ 313 (415)
..+..+...-. -++..|+.++.++|+|+.+.-+..+.. ....+.+..+... .-...-.|+-.+|.++||+..+
T Consensus 481 ~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn 560 (728)
T KOG4535|consen 481 LLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKN 560 (728)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcC
Confidence 22233322221 235779999999999987532211110 1111222222222 2234567999999999999986
Q ss_pred ChH-HHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhc
Q 014945 314 DDM-QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 355 (415)
Q Consensus 314 ~~~-~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~ 355 (415)
..- ....-....+++.|..++.+..+.+||..|+.+|.--..
T Consensus 561 ~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~ 603 (728)
T KOG4535|consen 561 PALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGK 603 (728)
T ss_pred ccccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCC
Confidence 542 111111224577788887666589999999999986664
No 154
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.37 E-value=0.0034 Score=63.85 Aligned_cols=164 Identities=18% Similarity=0.157 Sum_probs=123.5
Q ss_pred HHHHHHhhhCC-CCCchhhhhchHHHHHHhhc----CCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcC-C
Q 014945 221 TWTLSNFCRGK-PQPLFEQTRPALPALERLIH----SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR-H 294 (415)
Q Consensus 221 ~~~l~~l~~~~-~~~~~~~~~~~l~~l~~lL~----~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~-~ 294 (415)
..++..+|+.. -.........+.|.+++... .+||+++..|.-+++.+..-+.+. .+. -++.|+..+. +
T Consensus 898 ~d~i~~icE~eLl~gek~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~f----ces-~l~llftimeks 972 (1251)
T KOG0414|consen 898 ADLISGICEKELLYGEKSLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEF----CES-HLPLLFTIMEKS 972 (1251)
T ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHH----HHH-HHHHHHHHHhcC
Confidence 44455555443 11122334567788888874 457999999999999987655432 222 3688888886 8
Q ss_pred CChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHH
Q 014945 295 PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLV 374 (415)
Q Consensus 295 ~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~ 374 (415)
+++.+|..+.-++|.++...+...+ -.-+.|+..|.++ ++.||+.|..+++++... ..+--.|.++.+.
T Consensus 973 p~p~IRsN~VvalgDlav~fpnlie-----~~T~~Ly~rL~D~-~~~vRkta~lvlshLILn-----dmiKVKGql~eMA 1041 (1251)
T KOG0414|consen 973 PSPRIRSNLVVALGDLAVRFPNLIE-----PWTEHLYRRLRDE-SPSVRKTALLVLSHLILN-----DMIKVKGQLSEMA 1041 (1251)
T ss_pred CCceeeecchheccchhhhcccccc-----hhhHHHHHHhcCc-cHHHHHHHHHHHHHHHHh-----hhhHhcccHHHHH
Confidence 8999999999999999987774443 3456899999999 999999999999999864 1333478999999
Q ss_pred HHhccCCHHHHHHHHHHHHHHhCCCC
Q 014945 375 NLLLNAEFEIKKEAAWAISNATSGGS 400 (415)
Q Consensus 375 ~~l~~~~~~v~~~a~~aL~nl~~~~~ 400 (415)
.++.+++.+++.-|-.....++..++
T Consensus 1042 ~cl~D~~~~IsdlAk~FF~Els~k~n 1067 (1251)
T KOG0414|consen 1042 LCLEDPNAEISDLAKSFFKELSSKGN 1067 (1251)
T ss_pred HHhcCCcHHHHHHHHHHHHHhhhccc
Confidence 99999999999999977777776653
No 155
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.37 E-value=0.021 Score=51.51 Aligned_cols=190 Identities=17% Similarity=0.188 Sum_probs=115.1
Q ss_pred HHHHhccchhHhHHHHHHHHHHHhhhCCCCCchh--hhhchHHHHHHhhcCCChhHHHHHHHHHHHhccC--ChHHHHHH
Q 014945 204 LLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFE--QTRPALPALERLIHSNDDEVLTDACWALSYLSDG--TNDKIQAV 279 (415)
Q Consensus 204 L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~--~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~--~~~~~~~~ 279 (415)
.+..+ .......+..++..+.++........+. ....+++.+.+.++....+-+.-|+.+++-++-. .......+
T Consensus 48 ~Id~l-~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei 126 (309)
T PF05004_consen 48 AIDLL-TEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEI 126 (309)
T ss_pred HHHHH-HhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHH
Confidence 34444 3445778888888888888776443332 2355678888888877666666677777766533 22222334
Q ss_pred HHcCcHHHHHHhcCCCC--hhhHHHHHHHHHHhhc---CChHHHHHHHHCCChHHHHH--HhcCC---------CccchH
Q 014945 280 IEAGVCPRLVELLRHPS--PSVLIPALRTVGNIVT---GDDMQTQCIINHQALPCLLD--LLTQN---------YKKSIK 343 (415)
Q Consensus 280 ~~~~~i~~L~~lL~~~~--~~v~~~a~~~l~nl~~---~~~~~~~~~~~~~~l~~L~~--ll~~~---------~~~~v~ 343 (415)
++ .+.+.|...+.+.. ..++..++.+||-++. .........++ .+..+.. ..+.. .++.+.
T Consensus 127 ~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~~~~~l~ 203 (309)
T PF05004_consen 127 FE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAEDDAALV 203 (309)
T ss_pred HH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCCCccHHH
Confidence 43 46788888886554 4566677777776654 22222221112 2332211 22211 134577
Q ss_pred HHHHHHHHHHhcC-CHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhCC
Q 014945 344 KEACWTISNITAG-NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSG 398 (415)
Q Consensus 344 ~~a~~~l~nl~~~-~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~ 398 (415)
..|+.+-+-+... ....+....+. .++.|..+|.+++.+||..|..+|.-+...
T Consensus 204 ~aAL~aW~lLlt~~~~~~~~~~~~~-~~~~l~~lL~s~d~~VRiAAGEaiAll~E~ 258 (309)
T PF05004_consen 204 AAALSAWALLLTTLPDSKLEDLLEE-ALPALSELLDSDDVDVRIAAGEAIALLYEL 258 (309)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHH-HHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 7776555555553 33334444443 699999999999999999999999887643
No 156
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.34 E-value=0.0064 Score=57.27 Aligned_cols=250 Identities=14% Similarity=0.119 Sum_probs=145.8
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhH
Q 014945 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 151 (415)
Q Consensus 72 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~ 151 (415)
.+..|-..|.+.....++.|++.|..++... |..-.+ .-+.+-.++++.+ ..+-..|...|.. .++.+..+
T Consensus 304 ~vs~L~~fL~s~rv~~rFsA~Riln~lam~~--P~kv~v----cN~evEsLIsd~N-r~IstyAITtLLK--TGt~e~id 374 (898)
T COG5240 304 TVSSLRTFLKSTRVVLRFSAMRILNQLAMKY--PQKVSV----CNKEVESLISDEN-RTISTYAITTLLK--TGTEETID 374 (898)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHhhC--Cceeee----cChhHHHHhhccc-ccchHHHHHHHHH--cCchhhHH
Confidence 4566667778888888999999998886542 221111 1244455566666 4555555444432 45566666
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCC
Q 014945 152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK 231 (415)
Q Consensus 152 ~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~ 231 (415)
.+++ .|+.++.=++++-..+ ++.++..|+-.-|.-+.. .+..|...|.+...-+..+.+..+++.+....
T Consensus 375 rLv~--~I~sfvhD~SD~FKiI---~ida~rsLsl~Fp~k~~s-----~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~ 444 (898)
T COG5240 375 RLVN--LIPSFVHDMSDGFKII---AIDALRSLSLLFPSKKLS-----YLDFLGSSLLQEGGLEFKKYMVDAISDAMEND 444 (898)
T ss_pred HHHH--HHHHHHHhhccCceEE---eHHHHHHHHhhCcHHHHH-----HHHHHHHHHHhcccchHHHHHHHHHHHHHhhC
Confidence 6654 3555555444433333 444444444333322222 34556666656667778888888888888776
Q ss_pred CCCchhhhhchHHHHHHhhcCC-ChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHh
Q 014945 232 PQPLFEQTRPALPALERLIHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI 310 (415)
Q Consensus 232 ~~~~~~~~~~~l~~l~~lL~~~-d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl 310 (415)
|... ..++..|..++.+. -+++....+.+|+.=......- ...+..+..-+--++..+|..|+.+|+.+
T Consensus 445 p~sk----EraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~P------~~yvrhIyNR~iLEN~ivRsaAv~aLskf 514 (898)
T COG5240 445 PDSK----ERALEVLCTFIEDCEYHQITVRILGILGREGPRAKTP------GKYVRHIYNRLILENNIVRSAAVQALSKF 514 (898)
T ss_pred chHH----HHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCCc------chHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 5433 33455566666544 3455555555544422111110 01234444444446777999999999888
Q ss_pred hcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHh
Q 014945 311 VTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNIT 354 (415)
Q Consensus 311 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~ 354 (415)
+..-.+. +....+...|..++.+. ++++|..|.+.+.++-
T Consensus 515 ~ln~~d~---~~~~sv~~~lkRclnD~-DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 515 ALNISDV---VSPQSVENALKRCLNDQ-DDEVRDRASFLLRNMR 554 (898)
T ss_pred ccCcccc---ccHHHHHHHHHHHhhcc-cHHHHHHHHHHHHhhh
Confidence 7643311 11223445677788888 9999999999999986
No 157
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.33 E-value=0.0012 Score=48.07 Aligned_cols=91 Identities=18% Similarity=0.167 Sum_probs=67.5
Q ss_pred HHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCC
Q 014945 217 LRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPS 296 (415)
Q Consensus 217 ~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~ 296 (415)
+.-++++|...+..-+.........++|.++..+.++|..||..||.++.+++....+.+-. .=..+++.|..++.+++
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~-~f~~IF~~L~kl~~D~d 81 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILP-YFNEIFDALCKLSADPD 81 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCCc
Confidence 34566677777666555556667889999999999999999999999999998654433221 11357888899999999
Q ss_pred hhhHHHHHHHHHH
Q 014945 297 PSVLIPALRTVGN 309 (415)
Q Consensus 297 ~~v~~~a~~~l~n 309 (415)
+.|+..| ..|-+
T Consensus 82 ~~Vr~~a-~~Ld~ 93 (97)
T PF12755_consen 82 ENVRSAA-ELLDR 93 (97)
T ss_pred hhHHHHH-HHHHH
Confidence 9988776 44433
No 158
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=97.28 E-value=0.018 Score=45.61 Aligned_cols=126 Identities=13% Similarity=0.124 Sum_probs=98.0
Q ss_pred hHHHHHhcCChHHHHHHhccchh-----HhHHHHHHHHHHHhhhCCCCCchhhh-hchHHHHHHhhcCC--ChhHHHHHH
Q 014945 191 CRDLVLSNGALMPLLAQFNEHAK-----LSMLRNATWTLSNFCRGKPQPLFEQT-RPALPALERLIHSN--DDEVLTDAC 262 (415)
Q Consensus 191 ~~~~~~~~g~i~~L~~~l~~~~~-----~~~~~~a~~~l~~l~~~~~~~~~~~~-~~~l~~l~~lL~~~--d~~v~~~a~ 262 (415)
+...++..|++..|+.++..... ..+...++.++..|-++. ...+... ..++..++..+..+ |..+...++
T Consensus 3 FA~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg-~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sL 81 (160)
T PF11841_consen 3 FAQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHG-IVSWDTLSDSFIKKIASYVNSSAMDASILQRSL 81 (160)
T ss_pred hHHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcC-cCchhhccHHHHHHHHHHHccccccchHHHHHH
Confidence 34678889999999999965442 477888889999988763 3334333 45677777777544 688999999
Q ss_pred HHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHH
Q 014945 263 WALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQ 317 (415)
Q Consensus 263 ~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~ 317 (415)
..|-+++..++...+.+.+.=-++.|+.+|..+++.++..++..+-.+....++.
T Consensus 82 aILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~ 136 (160)
T PF11841_consen 82 AILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDS 136 (160)
T ss_pred HHHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChH
Confidence 9999999988877676666667999999999999999999999888887665543
No 159
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.27 E-value=0.013 Score=57.41 Aligned_cols=217 Identities=16% Similarity=0.090 Sum_probs=146.3
Q ss_pred hcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCC-hhHHHHHH
Q 014945 184 VAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSND-DEVLTDAC 262 (415)
Q Consensus 184 l~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d-~~v~~~a~ 262 (415)
++.....-+...++.|+...|+.+. ..+.+.....+..+|. . .-.-........++.+...++... ..-...++
T Consensus 489 ~aA~~K~~~~~~Ik~~~~~aLlrl~-~~q~e~akl~~~~aL~--~--~i~f~~~~~~~v~~~~~s~~~~d~~~~en~E~L 563 (748)
T KOG4151|consen 489 LAAKEKYERAKKIKPGGYEALLRLG-QQQFEEAKLKWYHALA--G--KIDFPGERSYEVVKPLDSALHNDEKGLENFEAL 563 (748)
T ss_pred HhhhhHHhcCccccccHHHHHHHHH-HHhchHHHHHHHHHHh--h--hcCCCCCchhhhhhhhcchhhhhHHHHHHHHHH
Confidence 3333444567788899999999998 4555555555566665 1 111111122344444444444332 22345678
Q ss_pred HHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHC-CChHHHHHHhcCCCccc
Q 014945 263 WALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINH-QALPCLLDLLTQNYKKS 341 (415)
Q Consensus 263 ~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~-~~l~~L~~ll~~~~~~~ 341 (415)
.++.||+..++...+.++....++.+-.++..+++..+..++..+.||..++.-....+.+. ..++.....+... +..
T Consensus 564 ~altnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~-~E~ 642 (748)
T KOG4151|consen 564 EALTNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVA-DEK 642 (748)
T ss_pred HHhhcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhh-hhH
Confidence 88999988777666778888777888888888999999999999999999887666667773 5567676777665 777
Q ss_pred hHHHHHHHHHHHhcCCHHHHHH-HHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCHHHHHHH
Q 014945 342 IKKEACWTISNITAGNVNQIQA-IIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKYK 407 (415)
Q Consensus 342 v~~~a~~~l~nl~~~~~~~~~~-l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l 407 (415)
....++.++..|+.-...++.. .-.......++.++.++++.++...+....|+. .+..+.++.+
T Consensus 643 ~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~-~~~~ei~~~~ 708 (748)
T KOG4151|consen 643 FELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLF-EALFEIAEKI 708 (748)
T ss_pred HhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHH-HHHHHHHHHh
Confidence 7777777777676644444442 223446788888999999999999888888844 3344444443
No 160
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.27 E-value=0.019 Score=47.34 Aligned_cols=92 Identities=15% Similarity=0.176 Sum_probs=73.1
Q ss_pred hHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCC-hHHHHHH
Q 014945 129 PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGA-LMPLLAQ 207 (415)
Q Consensus 129 ~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~-i~~L~~~ 207 (415)
+.+|..++-+++-++...+...+ ..++.+...|.++++.+|.+|+.+|.+|...+. +.-.|. +..++..
T Consensus 2 ~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~-----ik~k~~l~~~~l~~ 71 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDM-----IKVKGQLFSRILKL 71 (178)
T ss_pred HHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCc-----eeehhhhhHHHHHH
Confidence 78999999999999885443332 358899999999999999999999999975432 222233 3677788
Q ss_pred hccchhHhHHHHHHHHHHHhhhCC
Q 014945 208 FNEHAKLSMLRNATWTLSNFCRGK 231 (415)
Q Consensus 208 l~~~~~~~~~~~a~~~l~~l~~~~ 231 (415)
+ .+++++++..|..++..+....
T Consensus 72 l-~D~~~~Ir~~A~~~~~e~~~~~ 94 (178)
T PF12717_consen 72 L-VDENPEIRSLARSFFSELLKKR 94 (178)
T ss_pred H-cCCCHHHHHHHHHHHHHHHHhc
Confidence 8 8889999999999999999773
No 161
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=97.26 E-value=0.016 Score=55.01 Aligned_cols=207 Identities=17% Similarity=0.178 Sum_probs=128.8
Q ss_pred ChHHHHHhhCC-CCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhc----cchhHhHHHHHHHHHHHhhhCCC
Q 014945 158 AVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN----EHAKLSMLRNATWTLSNFCRGKP 232 (415)
Q Consensus 158 ~i~~L~~ll~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~----~~~~~~~~~~a~~~l~~l~~~~~ 232 (415)
.+..++.+..+ .++..+..++.+++.++---+.. +.+ + ..+..+...+. ........+...|+..-+.....
T Consensus 190 ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~-~~l-~-~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~ 266 (415)
T PF12460_consen 190 LLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDD-DDL-D-EFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGH 266 (415)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCh-hhH-H-HHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCC
Confidence 44555555433 45667777777777776432111 100 0 12233333221 11234556666777776665432
Q ss_pred CCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHH--------HHHHHHc----CcHHHHHHhcCCCChhhH
Q 014945 233 QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDK--------IQAVIEA----GVCPRLVELLRHPSPSVL 300 (415)
Q Consensus 233 ~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~--------~~~~~~~----~~i~~L~~lL~~~~~~v~ 300 (415)
......+..++.+|.+ +++...++.++..+....++. ++.+.+. .++|.|++.....+...+
T Consensus 267 ----~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k 340 (415)
T PF12460_consen 267 ----PLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIK 340 (415)
T ss_pred ----chHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhH
Confidence 1234456677777765 677788888888887653322 2223332 356677777776666688
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHH
Q 014945 301 IPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVN 375 (415)
Q Consensus 301 ~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~ 375 (415)
...+.+|+++..+-|...-.---..++|.+++.|..+ +..++..+..++..+....++.+..-++. +++.|++
T Consensus 341 ~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~-~~~v~~s~L~tL~~~l~~~~~~i~~hl~s-LI~~LL~ 413 (415)
T PF12460_consen 341 SNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLP-DADVLLSSLETLKMILEEAPELISEHLSS-LIPRLLK 413 (415)
T ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHcCHHHHHHHHHH-HHHHHHh
Confidence 8899999999998774433222236899999999888 89999999999999998777766654443 5666654
No 162
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.23 E-value=0.013 Score=57.83 Aligned_cols=226 Identities=13% Similarity=0.101 Sum_probs=150.2
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHH
Q 014945 117 PRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVL 196 (415)
Q Consensus 117 ~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~ 196 (415)
...+..+.++. +.++-.++..|..+.... +....+...+++...+..+.+.++-+--.|+..+..+|.-.|+
T Consensus 730 qeai~sl~d~q-vpik~~gL~~l~~l~e~r-~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e------ 801 (982)
T KOG4653|consen 730 QEAISSLHDDQ-VPIKGYGLQMLRHLIEKR-KKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPE------ 801 (982)
T ss_pred HHHHHHhcCCc-ccchHHHHHHHHHHHHhc-chhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcch------
Confidence 33444555555 789999999999999853 4555666678999999999999999999999988888755443
Q ss_pred hcCChHHHHHHhccc---hhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCCh
Q 014945 197 SNGALMPLLAQFNEH---AKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTN 273 (415)
Q Consensus 197 ~~g~i~~L~~~l~~~---~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~ 273 (415)
.+++.+.....+. ..++.+-.+-.++.++..............++..+...+.++|...+..++..++++|.-..
T Consensus 802 --~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a 879 (982)
T KOG4653|consen 802 --DILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLA 879 (982)
T ss_pred --hhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHh
Confidence 2556666643221 12355555667888887765554555556777788888888888899999999999986433
Q ss_pred HHHHHHHHcCcHHHHHHhcC-CCChhhHHHHHHHHHHhhcCChHHHHHHHH---CCChHHHHHHhcCCCccchHHHHHHH
Q 014945 274 DKIQAVIEAGVCPRLVELLR-HPSPSVLIPALRTVGNIVTGDDMQTQCIIN---HQALPCLLDLLTQNYKKSIKKEACWT 349 (415)
Q Consensus 274 ~~~~~~~~~~~i~~L~~lL~-~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~---~~~l~~L~~ll~~~~~~~v~~~a~~~ 349 (415)
.....++ ..++..++.+.. +++..+|..|...+..+..+.....-.+.. ......+..+.....+..++..|+.+
T Consensus 880 ~~vsd~~-~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~ 958 (982)
T KOG4653|consen 880 FQVSDFF-HEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLC 958 (982)
T ss_pred hhhhHHH-HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence 2211111 123445555554 556789999999999998876643333321 13334444444444266677777776
Q ss_pred HHHH
Q 014945 350 ISNI 353 (415)
Q Consensus 350 l~nl 353 (415)
+-.+
T Consensus 959 leei 962 (982)
T KOG4653|consen 959 LEEI 962 (982)
T ss_pred HHHH
Confidence 6544
No 163
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.17 E-value=0.077 Score=51.79 Aligned_cols=225 Identities=16% Similarity=0.175 Sum_probs=133.6
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhcCCCchhHHHH
Q 014945 117 PRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLV 195 (415)
Q Consensus 117 ~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~ 195 (415)
..+-..|..++ .-.-..|.-.++-+..++.. . .++.-+..+-.. .++.+.+-..-.++-+.....
T Consensus 452 e~lKevLy~D~-AvsGEAAgi~MGl~mlGt~~-~------eaiedm~~Ya~ETQHeki~RGl~vGiaL~~ygrq------ 517 (929)
T KOG2062|consen 452 EKLKEVLYNDS-AVSGEAAGIAMGLLMLGTAN-Q------EAIEDMLTYAQETQHEKIIRGLAVGIALVVYGRQ------ 517 (929)
T ss_pred HHHHHHHhccc-hhhhhHHHHhhhhHhhCcCc-H------HHHHHHHHHhhhhhHHHHHHHHHHhHHHHHhhhh------
Confidence 44555555544 33344455555555554321 1 134445555443 344444433333333322221
Q ss_pred HhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHh-hcCCChhHHHHHHHHHHHhccCChH
Q 014945 196 LSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERL-IHSNDDEVLTDACWALSYLSDGTND 274 (415)
Q Consensus 196 ~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~l-L~~~d~~v~~~a~~~l~~l~~~~~~ 274 (415)
+...+++.-+..+.++-++...+.++.---.+- ...+++..|++. ..+.+.+|+..|.-+|+.++..+++
T Consensus 518 ---e~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GT------gnnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~ 588 (929)
T KOG2062|consen 518 ---EDADPLIKELLRDKDPILRYGGMYTLALAYVGT------GNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPE 588 (929)
T ss_pred ---hhhHHHHHHHhcCCchhhhhhhHHHHHHHHhcc------CchhhHHHhhcccccccchHHHHHHHHHheeeEecChh
Confidence 133445554446778877777766655333221 113455556655 4667899999999999999877765
Q ss_pred HHHHHHHcCcHHHHHHhcC-CCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHH
Q 014945 275 KIQAVIEAGVCPRLVELLR-HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNI 353 (415)
Q Consensus 275 ~~~~~~~~~~i~~L~~lL~-~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl 353 (415)
. ++..+++|. +-++.||-.+..+||-.|.|..... ++..|-.+..++ ..-||+.|+.+++-|
T Consensus 589 ~---------~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~e-------Ai~lLepl~~D~-~~fVRQgAlIa~amI 651 (929)
T KOG2062|consen 589 Q---------LPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKE-------AINLLEPLTSDP-VDFVRQGALIALAMI 651 (929)
T ss_pred h---------chHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHH-------HHHHHhhhhcCh-HHHHHHHHHHHHHHH
Confidence 4 467777775 5589999999999999998876322 355566677777 889999999999988
Q ss_pred hcC-CHHHHHHHHHcCCHHHHHHHhccCCHH
Q 014945 354 TAG-NVNQIQAIIEAGIIGPLVNLLLNAEFE 383 (415)
Q Consensus 354 ~~~-~~~~~~~l~~~~~i~~L~~~l~~~~~~ 383 (415)
... ++..... -.++...+.+.+.+.+.+
T Consensus 652 m~Q~t~~~~pk--v~~frk~l~kvI~dKhEd 680 (929)
T KOG2062|consen 652 MIQQTEQLCPK--VNGFRKQLEKVINDKHED 680 (929)
T ss_pred HHhcccccCch--HHHHHHHHHHHhhhhhhH
Confidence 752 2221111 123556666677664443
No 164
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.17 E-value=0.015 Score=57.34 Aligned_cols=225 Identities=12% Similarity=0.157 Sum_probs=143.1
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhh
Q 014945 161 IFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTR 240 (415)
Q Consensus 161 ~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~ 240 (415)
..+..+.++...++..++..|..++.... -...+...+++...+..+ .+.++-+.-+|...+..||.-.| .
T Consensus 731 eai~sl~d~qvpik~~gL~~l~~l~e~r~-~~~~~~~ekvl~i~ld~L-kdedsyvyLnaI~gv~~Lcevy~-------e 801 (982)
T KOG4653|consen 731 EAISSLHDDQVPIKGYGLQMLRHLIEKRK-KATLIQGEKVLAIALDTL-KDEDSYVYLNAIRGVVSLCEVYP-------E 801 (982)
T ss_pred HHHHHhcCCcccchHHHHHHHHHHHHhcc-hhhhhhHHHHHHHHHHHh-cccCceeeHHHHHHHHHHHHhcc-------h
Confidence 34445556677789999999999987553 235667778888999999 78888888899998888887633 4
Q ss_pred chHHHHHHhh-cCCC---hhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChH
Q 014945 241 PALPALERLI-HSND---DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM 316 (415)
Q Consensus 241 ~~l~~l~~lL-~~~d---~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~ 316 (415)
.++|-+.+.- +..+ .+-+-..-.++.++...-.+....... -++...+....+++...|..++..+|++|.-...
T Consensus 802 ~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~ 880 (982)
T KOG4653|consen 802 DILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREPDHEFRASSLANLGQLCQLLAF 880 (982)
T ss_pred hhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhh
Confidence 5566665532 2211 222222224555554333332222222 3556677777888888899999999999975553
Q ss_pred HHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHH---cCCHHHHHHHhcc-CCHHHHHHHHHHH
Q 014945 317 QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE---AGIIGPLVNLLLN-AEFEIKKEAAWAI 392 (415)
Q Consensus 317 ~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~---~~~i~~L~~~l~~-~~~~v~~~a~~aL 392 (415)
.....+. .++..++.+...+.++-+|+.|+..+..+..+.....-.+.. .+....+...... ++..++..|+.++
T Consensus 881 ~vsd~~~-ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~l 959 (982)
T KOG4653|consen 881 QVSDFFH-EVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCL 959 (982)
T ss_pred hhhHHHH-HHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 3332221 345556666665547889999999999998865544433332 2234444444444 4556777888777
Q ss_pred HHHh
Q 014945 393 SNAT 396 (415)
Q Consensus 393 ~nl~ 396 (415)
..+-
T Consensus 960 eei~ 963 (982)
T KOG4653|consen 960 EEIQ 963 (982)
T ss_pred HHHH
Confidence 6653
No 165
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=97.15 E-value=0.022 Score=45.13 Aligned_cols=130 Identities=13% Similarity=0.097 Sum_probs=99.1
Q ss_pred HHHHHcCcHHHHHHhcCCCC------hhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCC-ccchHHHHHHH
Q 014945 277 QAVIEAGVCPRLVELLRHPS------PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNY-KKSIKKEACWT 349 (415)
Q Consensus 277 ~~~~~~~~i~~L~~lL~~~~------~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~-~~~v~~~a~~~ 349 (415)
..+++.|++..|++++.+.. ..+...++.++..+....- .....++..++..+..++.... +..+...|...
T Consensus 5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~-vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaI 83 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGI-VSWDTLSDSFIKKIASYVNSSAMDASILQRSLAI 83 (160)
T ss_pred HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCc-CchhhccHHHHHHHHHHHccccccchHHHHHHHH
Confidence 45788899999999997654 3666778888877776532 2233555567888888887663 67899999999
Q ss_pred HHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCHHHHHHH
Q 014945 350 ISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKYK 407 (415)
Q Consensus 350 l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l 407 (415)
|-+++.+++..-..+-+.=-++.|+..|...+++++..|...+.-+...++.+.-+.+
T Consensus 84 LEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~r~~i 141 (160)
T PF11841_consen 84 LESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSKRKEI 141 (160)
T ss_pred HHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 9999987666544444444599999999999999999999999999988877655554
No 166
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=97.15 E-value=0.29 Score=49.71 Aligned_cols=238 Identities=15% Similarity=0.151 Sum_probs=142.2
Q ss_pred hCCChHHHHHhhCC-----CCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhc---cchh----HhHHHHHHH
Q 014945 155 DHGAVPIFVRLLSS-----PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN---EHAK----LSMLRNATW 222 (415)
Q Consensus 155 ~~g~i~~L~~ll~~-----~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~---~~~~----~~~~~~a~~ 222 (415)
+.|++..++.++.+ ....+....+..|...+.- +.+|..+++.|+++.|+..+. .... ..+.+..+.
T Consensus 115 ~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv-~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~ 193 (802)
T PF13764_consen 115 ECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKV-KVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLE 193 (802)
T ss_pred cCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhh-HHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHH
Confidence 45888888888875 2345666666666666655 568999999999999998874 2222 556666666
Q ss_pred HHHHhhhCCCCCchh-------------hhhchHHHHHHhhcC----CChhHHHHHHHHHHHhccCChHHHHHHHHcCcH
Q 014945 223 TLSNFCRGKPQPLFE-------------QTRPALPALERLIHS----NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVC 285 (415)
Q Consensus 223 ~l~~l~~~~~~~~~~-------------~~~~~l~~l~~lL~~----~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i 285 (415)
++-.+.......... ....-+..+++.+.+ .++.+....+++|.+|+.+..+..+.+++. +
T Consensus 194 IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~--F 271 (802)
T PF13764_consen 194 IIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH--F 271 (802)
T ss_pred HHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH--H
Confidence 665555432111110 012235555555554 468899999999999999999887776643 2
Q ss_pred HHHHHhcCC--CChhhHHHHHHHHHHhhcCC------hHHHHHHHHCCChHHHHHHhcCCCccc----------------
Q 014945 286 PRLVELLRH--PSPSVLIPALRTVGNIVTGD------DMQTQCIINHQALPCLLDLLTQNYKKS---------------- 341 (415)
Q Consensus 286 ~~L~~lL~~--~~~~v~~~a~~~l~nl~~~~------~~~~~~~~~~~~l~~L~~ll~~~~~~~---------------- 341 (415)
...+++=.- ....--...+.++..++.+- ....+.+++.|++...+.+|... -|.
T Consensus 272 ~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~-~P~~~~~~s~eWk~~l~~p 350 (802)
T PF13764_consen 272 KPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKH-FPSLKNTDSPEWKEFLSRP 350 (802)
T ss_pred HHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHh-CcccccCCCHHHHHHhcCC
Confidence 222232111 11111123355666665543 35677888999999888877543 221
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhcc-CCHHHHHHHHHHHHHHhC
Q 014945 342 IKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN-AEFEIKKEAAWAISNATS 397 (415)
Q Consensus 342 v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~-~~~~v~~~a~~aL~nl~~ 397 (415)
--..+...|.-++.++.. .+.++..++++.+..+=.- ++..+=.-|=..|-.+..
T Consensus 351 sLp~iL~lL~GLa~gh~~-tQ~~~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~ 406 (802)
T PF13764_consen 351 SLPYILRLLRGLARGHEP-TQLLIAEQLLPLLHRLEQVSSEEHIGSLAENLLEALAE 406 (802)
T ss_pred cHHHHHHHHHHHHhcCHH-HHHHHHhhHHHHHHHhhcCCCccchHHHHHHHHHHHhc
Confidence 224566777777776554 3455666677555544332 234444444444444444
No 167
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.11 E-value=0.03 Score=55.02 Aligned_cols=245 Identities=14% Similarity=0.075 Sum_probs=158.5
Q ss_pred HhCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHH-HhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHH
Q 014945 142 IASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALG-NVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNA 220 (415)
Q Consensus 142 l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~-nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a 220 (415)
++.....-+...++.|+...|+++.....+..+-....+|. .+...+.. ....++++...+.++..-.-....
T Consensus 489 ~aA~~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~~------~~~v~~~~~s~~~~d~~~~en~E~ 562 (748)
T KOG4151|consen 489 LAAKEKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGER------SYEVVKPLDSALHNDEKGLENFEA 562 (748)
T ss_pred HhhhhHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCCc------hhhhhhhhcchhhhhHHHHHHHHH
Confidence 33333555566778899999999987777777767777776 33322211 112455666665333333334567
Q ss_pred HHHHHHhhhCCCCCchhhh-hchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHc-CcHHHHHHhcCCCChh
Q 014945 221 TWTLSNFCRGKPQPLFEQT-RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA-GVCPRLVELLRHPSPS 298 (415)
Q Consensus 221 ~~~l~~l~~~~~~~~~~~~-~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~-~~i~~L~~lL~~~~~~ 298 (415)
+.++.||+..+........ ...++.+-.++..+++..+..++..+.||..++.-....+.+. .-.+.....+...+..
T Consensus 563 L~altnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~ 642 (748)
T KOG4151|consen 563 LEALTNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEK 642 (748)
T ss_pred HHHhhcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhH
Confidence 8888888877633333333 4456667777788899999999999999998776665656653 3455555555556666
Q ss_pred hHHHHHHHHHHhhcCChHHHH-HHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHh
Q 014945 299 VLIPALRTVGNIVTGDDMQTQ-CIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLL 377 (415)
Q Consensus 299 v~~~a~~~l~nl~~~~~~~~~-~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l 377 (415)
...+++.++..|+.-...... ..-.......+..++.+. ++.++......+.|+.....+....+.....++.+...-
T Consensus 643 ~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~-~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~~~~ 721 (748)
T KOG4151|consen 643 FELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDE-DDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLSGLQ 721 (748)
T ss_pred HhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCc-hhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHHHHH
Confidence 677777777666554443333 222336778899999999 999999999999997766667667777776776666554
Q ss_pred ccCCHHHHHHHHHHHH
Q 014945 378 LNAEFEIKKEAAWAIS 393 (415)
Q Consensus 378 ~~~~~~v~~~a~~aL~ 393 (415)
.-.-...+..+..+|.
T Consensus 722 ~~~~a~~~~~~~~~l~ 737 (748)
T KOG4151|consen 722 KLNRAPKREDAAPCLS 737 (748)
T ss_pred HhhhhhhhhhhhhHHH
Confidence 3333344444444443
No 168
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=97.09 E-value=0.041 Score=49.99 Aligned_cols=202 Identities=12% Similarity=0.115 Sum_probs=144.2
Q ss_pred HHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCch----hhh----hchHHHHHHhhcCCChhHHHHHHHH
Q 014945 193 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLF----EQT----RPALPALERLIHSNDDEVLTDACWA 264 (415)
Q Consensus 193 ~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~----~~~----~~~l~~l~~lL~~~d~~v~~~a~~~ 264 (415)
..+...+.+..|+..| ..-+.+.+..++.++.++.+....... ... ..++..|+..-. ++++...+-..
T Consensus 70 ~Ei~~~dll~~Li~~L-~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~--~~dial~~g~m 146 (335)
T PF08569_consen 70 QEIYRSDLLYLLIRNL-PKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYE--NPDIALNCGDM 146 (335)
T ss_dssp HHHHHHTHHHHHHHTG-GGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGG--STTTHHHHHHH
T ss_pred HHHHHhCHHHHHHHHh-hhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhc--CccccchHHHH
Confidence 4555667888888888 777888999999999999988743322 122 223334444333 45555555555
Q ss_pred HHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHC---CChHHHHHHhcCCCccc
Q 014945 265 LSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINH---QALPCLLDLLTQNYKKS 341 (415)
Q Consensus 265 l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~---~~l~~L~~ll~~~~~~~ 341 (415)
+...+.. +.....++....+..+......++-++...|..++..+.+.........+.. .++.....+|.++ +.-
T Consensus 147 lRec~k~-e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~-NYv 224 (335)
T PF08569_consen 147 LRECIKH-ESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESS-NYV 224 (335)
T ss_dssp HHHHTTS-HHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-S-SHH
T ss_pred HHHHHhh-HHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCC-CeE
Confidence 6555544 4455678888888999999999999999999999999888877666666654 4567788899998 999
Q ss_pred hHHHHHHHHHHHhcC--CHHHHHHHH-HcCCHHHHHHHhccCCHHHHHHHHHHHHHHhCCC
Q 014945 342 IKKEACWTISNITAG--NVNQIQAII-EAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG 399 (415)
Q Consensus 342 v~~~a~~~l~nl~~~--~~~~~~~l~-~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~~ 399 (415)
+|..+...|+.+... +.......+ +..-+..++.+|.+....+|-+|-..+.-++...
T Consensus 225 tkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp 285 (335)
T PF08569_consen 225 TKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANP 285 (335)
T ss_dssp HHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-S
T ss_pred eehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCC
Confidence 999999999999863 444444444 3456889999999999999999999999888654
No 169
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=96.97 E-value=0.0013 Score=49.11 Aligned_cols=72 Identities=21% Similarity=0.254 Sum_probs=60.1
Q ss_pred CChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHh
Q 014945 325 QALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT 396 (415)
Q Consensus 325 ~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~ 396 (415)
.++..|+.+|..+.++.+..-||.=|+.++...|..+..+-+.|+-..++++|.++|++|+.+|+.|+..+.
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 457889999955548889999999999999977777777767899999999999999999999999998775
No 170
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.92 E-value=0.47 Score=47.05 Aligned_cols=323 Identities=13% Similarity=0.109 Sum_probs=187.5
Q ss_pred HHHHHHhhcCC-CHHHHHHHHHHHHHHhccCCCCchhHHH--hcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchh
Q 014945 73 LPAMVAGVWSD-DRNIQLDATTQFRKLLSIERSPPINEVI--QSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN 149 (415)
Q Consensus 73 i~~l~~~l~~~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~--~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~ 149 (415)
...++++++.+ |..++..+++.++.++..- +-.-+.+. -..+...+.+++..-..-+.+...+..++-+.....+.
T Consensus 528 Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~-nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~ 606 (978)
T KOG1993|consen 528 YCAFLNLLQDQNDLVVRLTTARTLKLVVDDW-NFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEH 606 (978)
T ss_pred HHHHHHhcCccccceeehHHHHHHHHhhhhc-cCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHh
Confidence 45677888865 7788888999998887543 22222221 13344555566655332466777777777666533333
Q ss_pred hHHHHhCCChHHHHHhhC---CCCHHHHHHHHHHHHHhcC----CCchhHHHHHhcCChHHHHHHhccc---hhHhHHHH
Q 014945 150 TRVVIDHGAVPIFVRLLS---SPTDDVREQAVWALGNVAG----DSPKCRDLVLSNGALMPLLAQFNEH---AKLSMLRN 219 (415)
Q Consensus 150 ~~~~~~~g~i~~L~~ll~---~~~~~v~~~a~~~L~nl~~----~~~~~~~~~~~~g~i~~L~~~l~~~---~~~~~~~~ 219 (415)
..... +-+-.++..|- .+.+-++...+.+|.|+.. .++.+.. ++-+.+.+-.+. +..-+.+.
T Consensus 607 I~P~~--~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~~------fL~pVIel~~D~~sP~hv~L~ED 678 (978)
T KOG1993|consen 607 IAPYA--STIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEFYP------FLYPVIELSTDPSSPEHVYLLED 678 (978)
T ss_pred hhHHH--HHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccchH------HHHHHHHHhcCCCCCceeehhhh
Confidence 22111 11112222221 2456678888888888752 1221111 222333333221 23345566
Q ss_pred HHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHH-HhccCChHHHHHHHHcCcHHHHHHhcCCCChh
Q 014945 220 ATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALS-YLSDGTNDKIQAVIEAGVCPRLVELLRHPSPS 298 (415)
Q Consensus 220 a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~-~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~ 298 (415)
+.........+.+. -.....+++|.++..++...+.++. ++.++. ++.-.++.. -.....|++..+..++.+-..+
T Consensus 679 gmeLW~~~L~n~~~-l~p~ll~L~p~l~~~iE~ste~L~t-~l~Ii~sYilLd~~~f-l~~y~~~i~k~~~~~l~dvr~e 755 (978)
T KOG1993|consen 679 GMELWLTTLMNSQK-LTPELLLLFPHLLYIIEQSTENLPT-VLMIISSYILLDNTVF-LNDYAFGIFKKLNDLLDDVRNE 755 (978)
T ss_pred HHHHHHHHHhcccc-cCHHHHHHHHHHHHHHHhhhhhHHH-HHHHHHHHHhhccHHH-HHHHHHHHHHHHHHHHHHhhHH
Confidence 66666665555322 2233467788888888765544432 333333 232233332 2234457888888888766666
Q ss_pred hHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHh-cCCCccchHHHHHHHHHHHhcCCHHHHHHHHH-cC--------
Q 014945 299 VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLL-TQNYKKSIKKEACWTISNITAGNVNQIQAIIE-AG-------- 368 (415)
Q Consensus 299 v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~-~~-------- 368 (415)
-....+.++-.+...++ ........++++.+..-+ ...+.|.+...-..+++.+.--+++..-.++. .+
T Consensus 756 gl~avLkiveili~t~~-il~~~~~~~~L~~lf~~I~~~~~yP~~~~~yl~vvaRi~l~n~~~~msvlqt~~~~d~~~~~ 834 (978)
T KOG1993|consen 756 GLQAVLKIVEILIKTNP-ILGSLLFSPLLSRLFLSIAENDKYPYVMGEYLLVVARISLRNPSLFMSVLQTKNTYDILIAM 834 (978)
T ss_pred HHHHHHHHHHHHHhhhH-HHHhhhcchhhHHHHHHHHhCCCCchhHHHHHHHHHHHHhcChHHHHHHHHhhhhHHHHHHH
Confidence 66777777777776655 444455668888887755 23336788888888888888777777766654 22
Q ss_pred CHHHHHHHhcc-CCHHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 014945 369 IIGPLVNLLLN-AEFEIKKEAAWAISNATSGGSNEQIKYKF 408 (415)
Q Consensus 369 ~i~~L~~~l~~-~~~~v~~~a~~aL~nl~~~~~~~~~~~l~ 408 (415)
++..-+.++.+ .+++-|+--+-|+..+...+.+.....|.
T Consensus 835 li~~WI~~~~~I~~~k~rKl~~LalsSll~t~~~~ila~~~ 875 (978)
T KOG1993|consen 835 LIGNWILLFDHINHPKDRKLNTLALSSLLRTNNPDILAVLD 875 (978)
T ss_pred HHHHHHHHcccCCCHHHhhHHHHHHHHHhccCCcHHHHHHh
Confidence 23333334444 67899999999999999887776665553
No 171
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.91 E-value=0.2 Score=45.19 Aligned_cols=171 Identities=16% Similarity=0.122 Sum_probs=109.4
Q ss_pred CchHHHH-HhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCC-chh
Q 014945 114 GVVPRFI-EFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS-PKC 191 (415)
Q Consensus 114 g~i~~L~-~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~-~~~ 191 (415)
+++..|+ ..+++.+ +.+|..|+.||+-.+--+.+.... .++.+...+..+++.++..|+.++..+.... ...
T Consensus 26 ~ll~~lI~P~v~~~~-~~vR~~al~cLGl~~Lld~~~a~~-----~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~ 99 (298)
T PF12719_consen 26 SLLDSLILPAVQSSD-PAVRELALKCLGLCCLLDKELAKE-----HLPLFLQALQKDDEEVKITALKALFDLLLTHGIDI 99 (298)
T ss_pred HHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhChHHHHH-----HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchh
Confidence 3455554 6788888 899999999999988765533322 3667777777778999999999999886321 111
Q ss_pred HHHHH-------hcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcC----CChhHHHH
Q 014945 192 RDLVL-------SNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHS----NDDEVLTD 260 (415)
Q Consensus 192 ~~~~~-------~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~----~d~~v~~~ 260 (415)
-+... ....+..+...+ .+.+++++..++..++.|.-...-.. ...++..|+-+..+ ++..++.-
T Consensus 100 ~~~~~~~~~~~~~~~l~~~l~~~l-~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~ 175 (298)
T PF12719_consen 100 FDSESDNDESVDSKSLLKILTKFL-DSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQC 175 (298)
T ss_pred ccchhccCccchHhHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHH
Confidence 11111 123455666666 55688899999999999887653222 12333333332222 34566666
Q ss_pred HHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCC
Q 014945 261 ACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP 295 (415)
Q Consensus 261 a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~ 295 (415)
....+-..+...... +..+...+++.+..+....
T Consensus 176 L~~Ffp~y~~s~~~~-Q~~l~~~f~~~l~~~~~~~ 209 (298)
T PF12719_consen 176 LSVFFPVYASSSPEN-QERLAEAFLPTLRTLSNAP 209 (298)
T ss_pred HHHHHHHHHcCCHHH-HHHHHHHHHHHHHHHHhCc
Confidence 666666666666655 4455566777777776543
No 172
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.91 E-value=0.009 Score=60.92 Aligned_cols=159 Identities=21% Similarity=0.246 Sum_probs=119.2
Q ss_pred chHHHHHhhcC----CCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhcCCCc
Q 014945 115 VVPRFIEFLSR----DDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLS-SPTDDVREQAVWALGNVAGDSP 189 (415)
Q Consensus 115 ~i~~L~~ll~~----~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~v~~~a~~~L~nl~~~~~ 189 (415)
+.|.+++..+. ++ |++|..|.-+|+.+..-+.++... .+|.|+..+. ++++.++.+++-++|.++..-|
T Consensus 920 f~piv~e~c~n~~~~sd-p~Lq~AAtLaL~klM~iSa~fces-----~l~llftimeksp~p~IRsN~VvalgDlav~fp 993 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSD-PELQAAATLALGKLMCISAEFCES-----HLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFP 993 (1251)
T ss_pred HHHHHHHHhcCCCcCCC-HHHHHHHHHHHHHHhhhhHHHHHH-----HHHHHHHHHhcCCCceeeecchheccchhhhcc
Confidence 56777887754 34 899999999999998866665543 4889999998 7899999999999999987766
Q ss_pred hhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhc
Q 014945 190 KCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLS 269 (415)
Q Consensus 190 ~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~ 269 (415)
..-+. .-+.|...| .+.++.++++|..++++|... ....+.|.++-+..+|.++++.|..-|=..+..|+
T Consensus 994 nlie~-----~T~~Ly~rL-~D~~~~vRkta~lvlshLILn----dmiKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els 1063 (1251)
T KOG0414|consen 994 NLIEP-----WTEHLYRRL-RDESPSVRKTALLVLSHLILN----DMIKVKGQLSEMALCLEDPNAEISDLAKSFFKELS 1063 (1251)
T ss_pred cccch-----hhHHHHHHh-cCccHHHHHHHHHHHHHHHHh----hhhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhh
Confidence 54333 345677777 788999999999999999865 34556889999999999999998877765666665
Q ss_pred cCChHHHHHHHHcCcHHHHHHhcCCC
Q 014945 270 DGTNDKIQAVIEAGVCPRLVELLRHP 295 (415)
Q Consensus 270 ~~~~~~~~~~~~~~~i~~L~~lL~~~ 295 (415)
......+ +++|-++..|++.
T Consensus 1064 ~k~n~iy------nlLPdil~~Ls~~ 1083 (1251)
T KOG0414|consen 1064 SKGNTIY------NLLPDILSRLSNG 1083 (1251)
T ss_pred hcccchh------hhchHHHHhhccC
Confidence 4432221 2445555555443
No 173
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=96.90 E-value=0.39 Score=46.51 Aligned_cols=296 Identities=15% Similarity=0.162 Sum_probs=151.8
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhH
Q 014945 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 151 (415)
Q Consensus 72 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~ 151 (415)
....++..-+ ++...+..|+..+.++.... |.... ..+..++.+..+.+ ..+|.+|+..|-.+|.+++++..
T Consensus 24 ~y~~il~~~k-g~~k~K~Laaq~I~kffk~F--P~l~~----~Ai~a~~DLcEDed-~~iR~~aik~lp~~ck~~~~~v~ 95 (556)
T PF05918_consen 24 DYKEILDGVK-GSPKEKRLAAQFIPKFFKHF--PDLQE----EAINAQLDLCEDED-VQIRKQAIKGLPQLCKDNPEHVS 95 (556)
T ss_dssp HHHHHHHGGG-S-HHHHHHHHHHHHHHHCC---GGGHH----HHHHHHHHHHT-SS-HHHHHHHHHHGGGG--T--T-HH
T ss_pred HHHHHHHHcc-CCHHHHHHHHHHHHHHHhhC--hhhHH----HHHHHHHHHHhccc-HHHHHHHHHhHHHHHHhHHHHHh
Confidence 4456666666 46889999999999987543 22221 24788999999998 99999999999999999888877
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhc--cchhHhHHHHHHHHHHHhhh
Q 014945 152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN--EHAKLSMLRNATWTLSNFCR 229 (415)
Q Consensus 152 ~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~--~~~~~~~~~~a~~~l~~l~~ 229 (415)
.+ ...|+++|.++++.-...+-++|..+...++.. .+..+...+. ...+..+++.++..|..=..
T Consensus 96 kv-----aDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~--------tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~ 162 (556)
T PF05918_consen 96 KV-----ADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKG--------TLTGLFSQIESSKSGDEQVRERALKFLREKLK 162 (556)
T ss_dssp HH-----HHHHHHHTT---HHHHHHHHHHHHHHHHH-HHH--------HHHHHHHHHH---HS-HHHHHHHHHHHHHHGG
T ss_pred HH-----HHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHH--------HHHHHHHHHHhcccCchHHHHHHHHHHHHHHh
Confidence 65 568999999988887788888888876555432 3445555552 24566788888876643332
Q ss_pred C-CCC---CchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhcc----CChHHHHHHHHcCcHHHHHHhc------CCC
Q 014945 230 G-KPQ---PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSD----GTNDKIQAVIEAGVCPRLVELL------RHP 295 (415)
Q Consensus 230 ~-~~~---~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~----~~~~~~~~~~~~~~i~~L~~lL------~~~ 295 (415)
. .+. +..+....++..+-+.|++-..+--.-...+|..+-. ......+.++ +.+.+.. ...
T Consensus 163 ~l~~~~~~p~~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qeLv-----~ii~eQa~Ld~~f~~s 237 (556)
T PF05918_consen 163 PLKPELLTPQKEMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKIYGGKQTIEGRQELV-----DIIEEQADLDQPFDPS 237 (556)
T ss_dssp GS-TTTS---HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG---GSSHHHHHHHH-----HHHHHHHTTTS---SS
T ss_pred hCcHHHhhchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCccccccCChHHHHHHH-----HHHHHHhccCCCCCCc
Confidence 2 111 1133334555666677765333333344445555543 1222323332 3333221 223
Q ss_pred ChhhHHHHHHHHHH----hhcCC--hHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCH-HHHHHHHHcC
Q 014945 296 SPSVLIPALRTVGN----IVTGD--DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV-NQIQAIIEAG 368 (415)
Q Consensus 296 ~~~v~~~a~~~l~n----l~~~~--~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~-~~~~~l~~~~ 368 (415)
++......+.|+.. +..+. ......+.+ .++|.+-.+ ....+-....++.-++.... .....+++.
T Consensus 238 D~e~Idrli~C~~~Alp~fs~~v~Sskfv~y~~~-kvlP~l~~l-----~e~~kl~lLk~lAE~s~~~~~~d~~~~L~~- 310 (556)
T PF05918_consen 238 DPESIDRLISCLRQALPFFSRGVSSSKFVNYMCE-KVLPKLSDL-----PEDRKLDLLKLLAELSPFCGAQDARQLLPS- 310 (556)
T ss_dssp SHHHHHHHHHHHHHHGGG-BTTB--HHHHHHHHH-HTCCCTT----------HHHHHHHHHHHHHTT----THHHHHHH-
T ss_pred CHHHHHHHHHHHHHhhHHhcCCCChHHHHHHHHH-HhcCChhhC-----ChHHHHHHHHHHHHHcCCCCcccHHHHHHH-
Confidence 34444333333332 11111 122332223 455544444 34567777888888886322 113333322
Q ss_pred CHHHHHHHhcc--CCH----HHHHHHHHHHHHHhCCCC
Q 014945 369 IIGPLVNLLLN--AEF----EIKKEAAWAISNATSGGS 400 (415)
Q Consensus 369 ~i~~L~~~l~~--~~~----~v~~~a~~aL~nl~~~~~ 400 (415)
++..|...|-. ..+ ...+..+.++.+|+...+
T Consensus 311 i~~~L~~ymP~~~~~~~l~fs~vEcLL~afh~La~k~p 348 (556)
T PF05918_consen 311 IFQLLKKYMPSKKTEPKLQFSYVECLLYAFHQLARKSP 348 (556)
T ss_dssp HHHHHHTTS----------HHHHHHHHHHHHHHHTT-T
T ss_pred HHHHHHHhCCCCCCCCcccchHhhHHHHHHHHHhhhCc
Confidence 33333333322 122 345667777778876644
No 174
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=96.87 E-value=0.0017 Score=48.56 Aligned_cols=71 Identities=18% Similarity=0.317 Sum_probs=60.3
Q ss_pred cHHHHHHhc-CCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhc
Q 014945 284 VCPRLVELL-RHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 355 (415)
Q Consensus 284 ~i~~L~~lL-~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~ 355 (415)
++..|+.+| .+.++.+..-||.=||.++...|..+..+-+.|+-..++.++.++ +++||.+|..++..+..
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~-d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHE-DPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-S-SHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence 578899999 445778888899999999999888888777889999999999999 99999999999987764
No 175
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=96.87 E-value=0.081 Score=48.94 Aligned_cols=147 Identities=14% Similarity=0.219 Sum_probs=101.6
Q ss_pred ChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHH-HHHHhccCChHHHHH
Q 014945 200 ALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACW-ALSYLSDGTNDKIQA 278 (415)
Q Consensus 200 ~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~-~l~~l~~~~~~~~~~ 278 (415)
++..++..|.++.+...+.-|+..|..+|...+..-+....-++..+++.-.+.++++...|.. ++.-++...+..
T Consensus 330 iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~--- 406 (516)
T KOG2956|consen 330 ILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQ--- 406 (516)
T ss_pred HHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchh---
Confidence 4566778886668888999999999999998766666655666666666656665555544444 344445555432
Q ss_pred HHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhc
Q 014945 279 VIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 355 (415)
Q Consensus 279 ~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~ 355 (415)
.+..+..++...+......++..+..++.+-+...-..+-..+.|.+++...+. +..||+.|+++|..+..
T Consensus 407 -----~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~-SS~VRKtaVfCLVamv~ 477 (516)
T KOG2956|consen 407 -----CIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDST-SSTVRKTAVFCLVAMVN 477 (516)
T ss_pred -----HHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCc-hHHhhhhHHHhHHHHHH
Confidence 123344444446667777888888888876542222222337889999999999 99999999999998875
No 176
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.86 E-value=0.1 Score=47.06 Aligned_cols=170 Identities=16% Similarity=0.078 Sum_probs=114.5
Q ss_pred CChHHHH-HhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCc
Q 014945 157 GAVPIFV-RLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPL 235 (415)
Q Consensus 157 g~i~~L~-~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~ 235 (415)
+.+..|+ ..+.++++.+|+.++.|||-.+--+...... .++.+...+ +..+..++..++.++.-+........
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~-----~l~l~~~~~-~~~~~~v~~~al~~l~Dll~~~g~~~ 99 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKE-----HLPLFLQAL-QKDDEEVKITALKALFDLLLTHGIDI 99 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHH-----HHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHcCchh
Confidence 3444444 4678889999999999999998665532222 456677777 55588899999999988876542211
Q ss_pred h---------hhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcC----CCChhhHHH
Q 014945 236 F---------EQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR----HPSPSVLIP 302 (415)
Q Consensus 236 ~---------~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~----~~~~~v~~~ 302 (415)
. .....++..+.+.+.+.+++++..++..++.|.-...-.. ...++..|+-..- .++..++..
T Consensus 100 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~----~~~vL~~Lll~yF~p~t~~~~~LrQ~ 175 (298)
T PF12719_consen 100 FDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD----PPKVLSRLLLLYFNPSTEDNQRLRQC 175 (298)
T ss_pred ccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHcCcccCCcHHHHHH
Confidence 1 1224677888899999999999999999999763321110 0223344443332 234567777
Q ss_pred HHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCC
Q 014945 303 ALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN 337 (415)
Q Consensus 303 a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~ 337 (415)
-...+-..+...+.. +..+...++|.+..+....
T Consensus 176 L~~Ffp~y~~s~~~~-Q~~l~~~f~~~l~~~~~~~ 209 (298)
T PF12719_consen 176 LSVFFPVYASSSPEN-QERLAEAFLPTLRTLSNAP 209 (298)
T ss_pred HHHHHHHHHcCCHHH-HHHHHHHHHHHHHHHHhCc
Confidence 777778888877644 5566678888888888665
No 177
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=96.84 E-value=0.0018 Score=35.98 Aligned_cols=30 Identities=20% Similarity=0.282 Sum_probs=26.3
Q ss_pred CHHHHHHHhccCCHHHHHHHHHHHHHHhCC
Q 014945 369 IIGPLVNLLLNAEFEIKKEAAWAISNATSG 398 (415)
Q Consensus 369 ~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~ 398 (415)
++|.+++++.+++++||..|+++|+.++.+
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 478999999999999999999999999864
No 178
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.81 E-value=0.14 Score=51.61 Aligned_cols=197 Identities=18% Similarity=0.204 Sum_probs=122.6
Q ss_pred HHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchH--HHHHHhhcCCCh-h
Q 014945 180 ALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPAL--PALERLIHSNDD-E 256 (415)
Q Consensus 180 ~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l--~~l~~lL~~~d~-~ 256 (415)
+|.++..+.+.....+++.|++..+...+....+.++...++..+.+++...+..........+ ..+-.++...+. +
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e 573 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE 573 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence 4557777778778889999999999999976778889999999999999775332222222111 233334444443 7
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHH-HHHHhc
Q 014945 257 VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPC-LLDLLT 335 (415)
Q Consensus 257 v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~-L~~ll~ 335 (415)
.-..++..++.+....++...... .+.+...-..++....... .....+ ..+.. +..++.
T Consensus 574 rsY~~~siLa~ll~~~~~~~~~~~---------------r~~~~~~l~e~i~~~~~~~---~~~~~~-~~f~~~~~~il~ 634 (699)
T KOG3665|consen 574 RSYNAASILALLLSDSEKTTECVF---------------RNSVNELLVEAISRWLTSE---IRVIND-RSFFPRILRILR 634 (699)
T ss_pred HHHHHHHHHHHHHhCCCcCccccc---------------hHHHHHHHHHHhhccCccc---eeehhh-hhcchhHHHHhc
Confidence 777777777777655433111111 1122222222333332221 111222 22333 666666
Q ss_pred CCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhcc-CCHHHHHHHHHHHHHH
Q 014945 336 QNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN-AEFEIKKEAAWAISNA 395 (415)
Q Consensus 336 ~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~-~~~~v~~~a~~aL~nl 395 (415)
.+..+.....|.|++.+++..+++..+.+.+.|+++.+.+.-.. ...+++.++...+.++
T Consensus 635 ~s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 695 (699)
T KOG3665|consen 635 LSKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIESC 695 (699)
T ss_pred ccCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhhcc
Confidence 66578899999999999999888888888899999888876543 2445566655554443
No 179
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=96.75 E-value=0.1 Score=51.10 Aligned_cols=281 Identities=16% Similarity=0.115 Sum_probs=160.1
Q ss_pred cCchHHHHHhhcCC-------CChHHHHHHHHHHHHHhC--CCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHH
Q 014945 113 SGVVPRFIEFLSRD-------DFPQLQFEAAWALTNIAS--GTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGN 183 (415)
Q Consensus 113 ~g~i~~L~~ll~~~-------~~~~i~~~a~~~L~~l~~--~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~n 183 (415)
.|+++.++..|... +++.-.+.|++.+.++.. ..+.....+.+.-+++.++..++++.--++..|+..+..
T Consensus 407 qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~ 486 (970)
T COG5656 407 QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFIST 486 (970)
T ss_pred hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHH
Confidence 47788888888421 124445667777777665 323334445555567777777888888899999999999
Q ss_pred hcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCc--hhhhhchHHHHHHhhcCCChhHHHHH
Q 014945 184 VAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPL--FEQTRPALPALERLIHSNDDEVLTDA 261 (415)
Q Consensus 184 l~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~--~~~~~~~l~~l~~lL~~~d~~v~~~a 261 (415)
+..+ +++..+-..+.+...+++ ++++.+++..|+.++.-+..+..... ...+.+.++.|+.+-+.-+.++...+
T Consensus 487 ~eeD---fkd~~ill~aye~t~ncl-~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~feiD~LS~v 562 (970)
T COG5656 487 IEED---FKDNGILLEAYENTHNCL-KNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNTFEIDPLSMV 562 (970)
T ss_pred HHHh---cccchHHHHHHHHHHHHH-hcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhcccccchHHHHH
Confidence 9544 334444444677777788 55788888899999988887751111 11223333444444344455555554
Q ss_pred HHHHH-HhccCChHHHHHHHHc---CcHHHHHHhcCCCC------hhhHHHHHHHHHHhh---cCCh--HHHHHHHHCCC
Q 014945 262 CWALS-YLSDGTNDKIQAVIEA---GVCPRLVELLRHPS------PSVLIPALRTVGNIV---TGDD--MQTQCIINHQA 326 (415)
Q Consensus 262 ~~~l~-~l~~~~~~~~~~~~~~---~~i~~L~~lL~~~~------~~v~~~a~~~l~nl~---~~~~--~~~~~~~~~~~ 326 (415)
...+. +.+..-......+... .++....+++..++ ++-+..|.+.|..+. -+-+ ..+-.-+....
T Consensus 563 Me~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~le~sl 642 (970)
T COG5656 563 MESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLKYLEVSL 642 (970)
T ss_pred HHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 44332 2222111111111111 12223333332221 123344444444433 2221 11222234466
Q ss_pred hHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCH-HHHHHHHHHHHHHhCCCC
Q 014945 327 LPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEF-EIKKEAAWAISNATSGGS 400 (415)
Q Consensus 327 l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~-~v~~~a~~aL~nl~~~~~ 400 (415)
.|.+--++++. ..+.-.+|+-.+-+.+--..+ +. -+.-|+.+.+.+++.+... .--.++.-++.|+...|.
T Consensus 643 ypvi~Filkn~-i~dfy~Ea~dildg~tf~ske-I~-pimwgi~Ell~~~l~~~~t~~y~ee~~~al~nfityG~ 714 (970)
T COG5656 643 YPVISFILKNE-ISDFYQEALDILDGYTFMSKE-IE-PIMWGIFELLLNLLIDEITAVYSEEVADALDNFITYGK 714 (970)
T ss_pred HHHHHHHHhhh-HHHHHHHHHHHHhhhhHHHHH-hh-hhhhHHHHHHHhcccccchhhhHHHHHHHHHHHHHhCc
Confidence 77777778887 788888898888777643222 21 2234567777777776664 667889999999998774
No 180
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=96.70 E-value=0.012 Score=58.54 Aligned_cols=155 Identities=17% Similarity=0.187 Sum_probs=113.2
Q ss_pred hhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHH--cCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCCh
Q 014945 238 QTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIE--AGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD 315 (415)
Q Consensus 238 ~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~--~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~ 315 (415)
+...++|.+++.++..+..++..-+.+|+++..+-+.. .+.. ..++|.|++.|+-++..++..++.++.-+....+
T Consensus 864 fF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~--vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~ 941 (1030)
T KOG1967|consen 864 FFCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQ--VLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESE 941 (1030)
T ss_pred HHHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHH--hhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhcc
Confidence 34678999999999778888888888898887766542 2322 2578889999999999999999999988876554
Q ss_pred HHHHHHHHCCChHHHHHHhcCCCc---cchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHH
Q 014945 316 MQTQCIINHQALPCLLDLLTQNYK---KSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAI 392 (415)
Q Consensus 316 ~~~~~~~~~~~l~~L~~ll~~~~~---~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL 392 (415)
.....-.+ .++|.++.+-.+. + ..||..|..++..+..-.|...-......++..|...|+++-.-||++|..+=
T Consensus 942 tL~t~~~~-Tlvp~lLsls~~~-~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR 1019 (1030)
T KOG1967|consen 942 TLQTEHLS-TLVPYLLSLSSDN-DNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTR 1019 (1030)
T ss_pred ccchHHHh-HHHHHHHhcCCCC-CcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHh
Confidence 33222222 5678888777666 4 57999999999999984333222333344888999999988888999998765
Q ss_pred HHHh
Q 014945 393 SNAT 396 (415)
Q Consensus 393 ~nl~ 396 (415)
.+-.
T Consensus 1020 ~~W~ 1023 (1030)
T KOG1967|consen 1020 QNWY 1023 (1030)
T ss_pred hhhh
Confidence 4433
No 181
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=96.70 E-value=0.016 Score=39.32 Aligned_cols=67 Identities=16% Similarity=0.227 Sum_probs=52.0
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcC
Q 014945 300 LIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAG 368 (415)
Q Consensus 300 ~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~ 368 (415)
.+.++|++|+++..+ .....+.+.++++.++++..+.+...+|-.|.++|+-++.. .+-.+.+-+.|
T Consensus 4 lKaaLWaighIgss~-~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T-~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSP-LGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISST-EEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcCh-HHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCC-HHHHHHHHHcC
Confidence 568999999999854 45666667799999999998775889999999999988864 44444444443
No 182
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=96.69 E-value=0.14 Score=43.36 Aligned_cols=138 Identities=17% Similarity=0.269 Sum_probs=100.0
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCC-----CChhhHHHHHHHHHHhhcCCh-HHHHHHHHCCChHHHH
Q 014945 258 LTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-----PSPSVLIPALRTVGNIVTGDD-MQTQCIINHQALPCLL 331 (415)
Q Consensus 258 ~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~-----~~~~v~~~a~~~l~nl~~~~~-~~~~~~~~~~~l~~L~ 331 (415)
..+++..+..++.+++.. ..++++.+--.+..+|.. +.+..|..++++||.++..++ +....++..+++|..+
T Consensus 96 VcnaL~LlQcvASHpdTr-~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCL 174 (293)
T KOG3036|consen 96 VCNALALLQCVASHPDTR-RAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCL 174 (293)
T ss_pred HHHHHHHHHHHhcCcchH-HHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHH
Confidence 456666777777776655 568888887788888853 346789999999999998655 5566777889999999
Q ss_pred HHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHH--------cCCHHHHH-HHhccCCHHHHHHHHHHHHHHhCC
Q 014945 332 DLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE--------AGIIGPLV-NLLLNAEFEIKKEAAWAISNATSG 398 (415)
Q Consensus 332 ~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~--------~~~i~~L~-~~l~~~~~~v~~~a~~aL~nl~~~ 398 (415)
+.+..+ +..-+..|.+++..|..++. ...+++. ..++..++ .+.+.+++++.+.++.+..+++..
T Consensus 175 rime~G-SelSKtvA~fIlqKIlldD~-GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdn 248 (293)
T KOG3036|consen 175 RIMESG-SELSKTVATFILQKILLDDV-GLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDN 248 (293)
T ss_pred HHHhcc-cHHHHHHHHHHHHHHhhccc-cHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Confidence 999999 88889999999988876321 1222221 11333333 334457889999999999888854
No 183
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=96.57 E-value=0.21 Score=43.25 Aligned_cols=101 Identities=12% Similarity=0.062 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHh
Q 014945 130 QLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQF 208 (415)
Q Consensus 130 ~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l 208 (415)
.....|+.+|--++--+|..+..+.....+..++.+|.. ..+.++..++.+|..+..++|.+...+-+.+++..++.++
T Consensus 106 ~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ll 185 (257)
T PF08045_consen 106 SLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLL 185 (257)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHH
Confidence 445668889988888889999999999999999999954 6788999999999999999998888999999999999999
Q ss_pred ccc-hhHhHHHHHHHHHHHhhhC
Q 014945 209 NEH-AKLSMLRNATWTLSNFCRG 230 (415)
Q Consensus 209 ~~~-~~~~~~~~a~~~l~~l~~~ 230 (415)
+.. .+.+++-.++.+|.-....
T Consensus 186 k~~~~~~~~r~K~~EFL~fyl~~ 208 (257)
T PF08045_consen 186 KSKSTDRELRLKCIEFLYFYLMP 208 (257)
T ss_pred ccccccHHHhHHHHHHHHHHHcc
Confidence 543 3677777777776655543
No 184
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.51 E-value=0.05 Score=57.18 Aligned_cols=164 Identities=16% Similarity=0.136 Sum_probs=109.6
Q ss_pred HHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCCh
Q 014945 218 RNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSP 297 (415)
Q Consensus 218 ~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~ 297 (415)
.++.|+...++...+ -.....+.+..++..+..+...+|..|+.|++.+...++.. +....+-..+..-+.+...
T Consensus 795 ~~a~li~~~la~~r~--f~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~v---L~~~dvq~~Vh~R~~Dssa 869 (1692)
T KOG1020|consen 795 DDAKLIVFYLAHARS--FSQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSV---LSRPDVQEAVHGRLNDSSA 869 (1692)
T ss_pred hhHHHHHHHHHhhhH--HHHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHh---hcCHHHHHHHHHhhccchh
Confidence 455555555554421 11223566777888888888999999999999999877643 2223344445555677888
Q ss_pred hhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHh
Q 014945 298 SVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLL 377 (415)
Q Consensus 298 ~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l 377 (415)
.||++|+..+|..+...++.... ....+..-+.++ ...||+.+...+.-+|..+|+. ..+.+ +...++.-.
T Consensus 870 sVREAaldLvGrfvl~~~e~~~q-----yY~~i~erIlDt-gvsVRKRvIKIlrdic~e~pdf-~~i~~--~cakmlrRv 940 (1692)
T KOG1020|consen 870 SVREAALDLVGRFVLSIPELIFQ-----YYDQIIERILDT-GVSVRKRVIKILRDICEETPDF-SKIVD--MCAKMLRRV 940 (1692)
T ss_pred HHHHHHHHHHhhhhhccHHHHHH-----HHHHHHhhcCCC-chhHHHHHHHHHHHHHHhCCCh-hhHHH--HHHHHHHHh
Confidence 99999999999998877765553 345677777777 8899999999999999865442 11111 122233333
Q ss_pred ccCCHHHHHHHHHHHHHH
Q 014945 378 LNAEFEIKKEAAWAISNA 395 (415)
Q Consensus 378 ~~~~~~v~~~a~~aL~nl 395 (415)
.+++..+++-++.++.++
T Consensus 941 ~DEEg~I~kLv~etf~kl 958 (1692)
T KOG1020|consen 941 NDEEGNIKKLVRETFLKL 958 (1692)
T ss_pred ccchhHHHHHHHHHHHHH
Confidence 333444777777777776
No 185
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=96.50 E-value=0.87 Score=43.93 Aligned_cols=286 Identities=13% Similarity=0.100 Sum_probs=149.4
Q ss_pred HHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHh
Q 014945 86 NIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRL 165 (415)
Q Consensus 86 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~l 165 (415)
..+..|+..++..+...+-.++..+ ...--.++......+.|..+...|..++........ ... ..+.+.
T Consensus 5 ~~R~~a~~~l~~~i~~~~~~~i~~i-----W~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~-~~R----~~fF~~ 74 (464)
T PF11864_consen 5 SERIKAAEELCESIQKYPLSSIEEI-----WYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSG-LMR----AEFFRD 74 (464)
T ss_pred HHHHHHHHHHHHHHHhCCchHHHHH-----HHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccH-HHH----HHHHHH
Confidence 4566677777766554322222222 222234555554467888888888888876433111 111 112222
Q ss_pred hC-CCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccch--------------------------hHhHHH
Q 014945 166 LS-SPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA--------------------------KLSMLR 218 (415)
Q Consensus 166 l~-~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~--------------------------~~~~~~ 218 (415)
+. ...++....-+.+|..|+.++... ..++.+..+.|...+.... +.....
T Consensus 75 I~~~~~~~d~~~~l~aL~~LT~~Grdi--~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~ 152 (464)
T PF11864_consen 75 ISDPSNDDDFDLRLEALIALTDNGRDI--DFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLS 152 (464)
T ss_pred HhcCCCchhHHHHHHHHHHHHcCCcCc--hhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHH
Confidence 22 234444556667777777666544 2245566666766662111 222334
Q ss_pred HHHHHHHHhhhCC-CCCchhhhhchHHHHHHhh-cCCChhHHHHHHHHHHHhccC---ChHHHHHHHHcCcHHHHHHhcC
Q 014945 219 NATWTLSNFCRGK-PQPLFEQTRPALPALERLI-HSNDDEVLTDACWALSYLSDG---TNDKIQAVIEAGVCPRLVELLR 293 (415)
Q Consensus 219 ~a~~~l~~l~~~~-~~~~~~~~~~~l~~l~~lL-~~~d~~v~~~a~~~l~~l~~~---~~~~~~~~~~~~~i~~L~~lL~ 293 (415)
.....+.++.... .......+.+++..+..+- .+.++.....++..+-.+..+ +++... .++..|....
T Consensus 153 ~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~-----~~i~vLCsi~- 226 (464)
T PF11864_consen 153 DLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLS-----PCIEVLCSIV- 226 (464)
T ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHH-----HHHHHHhhHh-
Confidence 4444455555444 2233334444555444442 223333334444443333221 111111 1122233332
Q ss_pred CCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCC-----CccchHHHHHHHHHHHhcCCHHHHHHHHH-c
Q 014945 294 HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN-----YKKSIKKEACWTISNITAGNVNQIQAIIE-A 367 (415)
Q Consensus 294 ~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~-----~~~~v~~~a~~~l~nl~~~~~~~~~~l~~-~ 367 (415)
...+....+-.++.||+...-.+ ..+..|..+|.++ .+..+...|...+..+..+..++...-+. .
T Consensus 227 -~~~~l~~~~w~~m~nL~~S~~g~-------~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~ 298 (464)
T PF11864_consen 227 -NSVSLCKPSWRTMRNLLKSHLGH-------SAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFS 298 (464)
T ss_pred -cccccchhHHHHHHHHHcCccHH-------HHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceeccc
Confidence 22256777888999998754322 2356677878322 13456678888898888765222221121 2
Q ss_pred C--CHHHHHHHhccCCHHHHHHHHHHHHHHhC
Q 014945 368 G--IIGPLVNLLLNAEFEIKKEAAWAISNATS 397 (415)
Q Consensus 368 ~--~i~~L~~~l~~~~~~v~~~a~~aL~nl~~ 397 (415)
- +++.+...++.+++.+-.+.+..+.++..
T Consensus 299 ~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll~ 330 (464)
T PF11864_consen 299 PSSVLPSLLNALKSNSPRVDYEILLLINRLLD 330 (464)
T ss_pred HHHHHHHHHHHHhCCCCeehHHHHHHHHHHHh
Confidence 2 78888888988888888888888888773
No 186
>PRK14707 hypothetical protein; Provisional
Probab=96.48 E-value=1 Score=49.73 Aligned_cols=318 Identities=17% Similarity=0.103 Sum_probs=170.4
Q ss_pred HHHHHHhhcC--CCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhh
Q 014945 73 LPAMVAGVWS--DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 150 (415)
Q Consensus 73 i~~l~~~l~~--~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~ 150 (415)
+..+++.+.. ++.+.+. ++..|...+..+ ......+-..|+...|-.+-+-++++..+..+...-..++.+ ...+
T Consensus 165 ~~lllNafSKw~~~~~c~~-aa~~la~~~~~~-d~~~~~~~~q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~-~~l~ 241 (2710)
T PRK14707 165 ISLALNAFSKWSDNPDCQA-VAPRFAALVASD-DRLRSAMDAQGVATVLNALCKWPDTPDCGNAVSALAERLADE-SRLR 241 (2710)
T ss_pred HHHHHHHhhcCCCCchHHH-HHHHHHHHhcCC-hhhhcccchHHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCc-HHHH
Confidence 4455555552 3444444 444444444433 233333434444444444445566455544444444445543 3333
Q ss_pred HHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhh
Q 014945 151 RVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 229 (415)
Q Consensus 151 ~~~~~~g~i~~L~~ll~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~ 229 (415)
.. ++...+...++.|+. ++...-.+++.++..=..+.+..+..+- ...+...++-|.+-.+..+...+...+..=..
T Consensus 242 ~~-~~~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~~~l~~al~-~q~vanalNalSKwpd~~vc~~Aa~~la~rl~ 319 (2710)
T PRK14707 242 NE-LKPQELGNALNALSKWADTPVCAAAASALAERLVDDPGLRKALD-PINVTQALNALSKWADLPVCAEAAIALAERLA 319 (2710)
T ss_pred Hh-CChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhhHHHHHhcC-HHHHHHHHhhhhcCCCchHHHHHHHHHHHHHh
Confidence 33 333345555565554 5665555666555543334444444432 22455556666677777777666655554333
Q ss_pred CCCCCchhh-hhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHH
Q 014945 230 GKPQPLFEQ-TRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVG 308 (415)
Q Consensus 230 ~~~~~~~~~-~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~ 308 (415)
+++...... ..++-..|..+-+-+|..+...+..+|.--...+++..+.+--.|+-..|-.+-+-++..+...+...|+
T Consensus 320 ~d~~l~~~~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~~q~~a~~lNalsKWp~~~~c~~aa~~LA 399 (2710)
T PRK14707 320 DDPELCKALNARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDLEPQGVSSVLNALSKWPDTPVCAAAASALA 399 (2710)
T ss_pred ccHhhhhccchHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcccchhHHHHHHhhhhcCCCchHHHHHHHHHH
Confidence 333222222 2333334444445677666666666665544444444343333344334444445566666666767776
Q ss_pred HhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHH
Q 014945 309 NIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEA 388 (415)
Q Consensus 309 nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a 388 (415)
.=..+.++..+.+-..|+-..|-.+-+.+ +..+...++..|.--..++.+-.+.+-..++...|--+-+.+|..+...|
T Consensus 400 ~~l~~d~~l~~~~~~Q~van~lnalsKWP-d~~~C~~aa~~lA~~la~d~~l~~~~~p~~va~~LnalSKWPd~p~c~~a 478 (2710)
T PRK14707 400 EHVVDDLELRKGLDPQGVSNALNALAKWP-DLPICGQAVSALAGRLAHDTELCKALDPINVTQALDALSKWPDTPICGQT 478 (2710)
T ss_pred HHhccChhhhhhcchhhHHHHHHHhhcCC-cchhHHHHHHHHHHHHhccHHHHhhcChHHHHHHHHHhhcCCCChhHHHH
Confidence 66656666655554446666666677788 77888888887776666667766555555555555555567887777666
Q ss_pred HHHHHHHh
Q 014945 389 AWAISNAT 396 (415)
Q Consensus 389 ~~aL~nl~ 396 (415)
+..|..=.
T Consensus 479 a~~La~~l 486 (2710)
T PRK14707 479 ASALAARL 486 (2710)
T ss_pred HHHHHHHh
Confidence 66665433
No 187
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=96.46 E-value=0.13 Score=44.17 Aligned_cols=152 Identities=13% Similarity=0.127 Sum_probs=102.6
Q ss_pred CChhHHHHHHHHHHHhccCChHHHHHHHHc-CcHHHHHHh-------cCCCC--h---hhHHHHHHHHHHhhcCChHHHH
Q 014945 253 NDDEVLTDACWALSYLSDGTNDKIQAVIEA-GVCPRLVEL-------LRHPS--P---SVLIPALRTVGNIVTGDDMQTQ 319 (415)
Q Consensus 253 ~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~-~~i~~L~~l-------L~~~~--~---~v~~~a~~~l~nl~~~~~~~~~ 319 (415)
.+++.++.|+.-|+.--+..++..-.+..+ |.+..|++- ++.++ . .-...|+..+..++.+ ++.+.
T Consensus 7 ~~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAsh-petr~ 85 (262)
T PF04078_consen 7 CNPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASH-PETRM 85 (262)
T ss_dssp SSHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH--TTTHH
T ss_pred cCcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcC-hHHHH
Confidence 356778887777776655444443333333 665555433 33332 2 1223455556666664 55778
Q ss_pred HHHHCCChHHHHHHhcCCC----ccchHHHHHHHHHHHhc-CCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHH
Q 014945 320 CIINHQALPCLLDLLTQNY----KKSIKKEACWTISNITA-GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISN 394 (415)
Q Consensus 320 ~~~~~~~l~~L~~ll~~~~----~~~v~~~a~~~l~nl~~-~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~n 394 (415)
.++++++.-.|..+|+... -..+|-.+..+++.+.. ++++.+..+.+.+++|..++.|+.++.-.+..|...+..
T Consensus 86 ~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqK 165 (262)
T PF04078_consen 86 PFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQK 165 (262)
T ss_dssp HHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 8999999888888886552 24688889999999997 688999999999999999999999999999999999999
Q ss_pred HhCCCCHHHHHHH
Q 014945 395 ATSGGSNEQIKYK 407 (415)
Q Consensus 395 l~~~~~~~~~~~l 407 (415)
+..+ ...+.|+
T Consensus 166 IL~d--d~GL~yi 176 (262)
T PF04078_consen 166 ILLD--DVGLNYI 176 (262)
T ss_dssp HHHS--HHHHHHH
T ss_pred HHcc--hhHHHHH
Confidence 9864 4444554
No 188
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=96.45 E-value=0.19 Score=43.32 Aligned_cols=222 Identities=14% Similarity=0.153 Sum_probs=127.0
Q ss_pred CHHHHHHHHHHHHHhcCCCchhHHHHHh-cCChHHHHHHhc------cch--hH---hHHHHHHHHHHHhhhCCCCCchh
Q 014945 170 TDDVREQAVWALGNVAGDSPKCRDLVLS-NGALMPLLAQFN------EHA--KL---SMLRNATWTLSNFCRGKPQPLFE 237 (415)
Q Consensus 170 ~~~v~~~a~~~L~nl~~~~~~~~~~~~~-~g~i~~L~~~l~------~~~--~~---~~~~~a~~~l~~l~~~~~~~~~~ 237 (415)
+++.++.|+.-|+.--...++..-.+.. .|.+..|++-+- ..+ +. .-..+|+..+--++.+ |.....
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAsh-petr~~ 86 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASH-PETRMP 86 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH--TTTHHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcC-hHHHHH
Confidence 5778888888888776655555444433 455555554331 111 12 2234445555556665 555555
Q ss_pred hhhchHH-HHHHhhcCCC-----hhHHHHHHHHHHHhccC-ChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHh
Q 014945 238 QTRPALP-ALERLIHSND-----DEVLTDACWALSYLSDG-TNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI 310 (415)
Q Consensus 238 ~~~~~l~-~l~~lL~~~d-----~~v~~~a~~~l~~l~~~-~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl 310 (415)
+...-+| .|.++|+..+ +.++-.+++.++.+... +.+.+..+.+++++|..+..+..+++--+.-|..++..+
T Consensus 87 Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKI 166 (262)
T PF04078_consen 87 FLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKI 166 (262)
T ss_dssp HHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 5443333 4556665432 66889999999999864 456778889999999999999988888888899999888
Q ss_pred hcCChHHHHHHH-------H-CCChHHHHH-HhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHH---cCCHHHHHHHhc
Q 014945 311 VTGDDMQTQCII-------N-HQALPCLLD-LLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE---AGIIGPLVNLLL 378 (415)
Q Consensus 311 ~~~~~~~~~~~~-------~-~~~l~~L~~-ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~---~~~i~~L~~~l~ 378 (415)
...+. ....+. . ..++..++. +...+ ++++-+....+-..++.+ +.....+.. ..+-...+..+-
T Consensus 167 L~dd~-GL~yiC~t~eRf~av~~vL~~mV~~l~~~p-S~RLLKhIIrCYlRLsdn-prar~aL~~~LP~~Lrd~~f~~~l 243 (262)
T PF04078_consen 167 LLDDV-GLNYICQTAERFFAVAMVLNKMVEQLVKQP-SPRLLKHIIRCYLRLSDN-PRAREALRQCLPDQLRDGTFSNIL 243 (262)
T ss_dssp HHSHH-HHHHHTSSHHHHHHHHHHHHHHHHHHHHS---HHHHHHHHHHHHHHTTS-TTHHHHHHHHS-GGGTSSTTTTGG
T ss_pred Hcchh-HHHHHhcCHHHHHHHHHHHHHHHHHHccCC-ChhHHHHHHHHHHHHccC-HHHHHHHHHhCcHHHhcHHHHHHH
Confidence 76432 111111 0 123444444 44555 889999999999999874 333333332 111111111112
Q ss_pred cCCHHHHHHHHHHHHHH
Q 014945 379 NAEFEIKKEAAWAISNA 395 (415)
Q Consensus 379 ~~~~~v~~~a~~aL~nl 395 (415)
.+|+.++.--...+.|+
T Consensus 244 ~~D~~~k~~l~qLl~nl 260 (262)
T PF04078_consen 244 KDDPSTKRWLQQLLSNL 260 (262)
T ss_dssp CS-HHHHHHHHHHHHHT
T ss_pred hcCHHHHHHHHHHHHHh
Confidence 24666666555555554
No 189
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.44 E-value=0.81 Score=42.92 Aligned_cols=265 Identities=13% Similarity=0.097 Sum_probs=135.8
Q ss_pred hcCchHHHHHhh----cCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhcC
Q 014945 112 QSGVVPRFIEFL----SRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLS-SPTDDVREQAVWALGNVAG 186 (415)
Q Consensus 112 ~~g~i~~L~~ll----~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~v~~~a~~~L~nl~~ 186 (415)
+.|.+..++..+ .+++ ..++..|+.+|++.+++-|+....... -.+..++.-|. ..+.+|+-.++.+|..+..
T Consensus 252 ~~~lL~s~~~~la~ka~dp~-a~~r~~a~r~L~~~as~~P~kv~th~~-~~ldaii~gL~D~~~~~V~leam~~Lt~v~~ 329 (533)
T KOG2032|consen 252 KTGLLGSVLLSLANKATDPS-AKSRGMACRGLGNTASGAPDKVRTHKT-TQLDAIIRGLYDDLNEEVQLEAMKCLTMVLE 329 (533)
T ss_pred ccccHHHHHHHHHHhccCch-hHHHHHHHHHHHHHhccCcHHHHHhHH-HHHHHHHHHHhcCCccHHHHHHHHHHHHHHH
Confidence 334444444433 4455 689999999999999985654443333 23555555444 4568899999999888764
Q ss_pred CCc--hhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCC--Cchhh--hhchHHHHHHhhcCCChhHHHH
Q 014945 187 DSP--KCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQ--PLFEQ--TRPALPALERLIHSNDDEVLTD 260 (415)
Q Consensus 187 ~~~--~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~--~~~~~--~~~~l~~l~~lL~~~d~~v~~~ 260 (415)
.-. .....++. +...+..+. .+.+.+++.++...+..|+..... ..+.. +.+....++-.|+++++.+ ..
T Consensus 330 ~~~~~~l~~~~l~--ialrlR~l~-~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~v-a~ 405 (533)
T KOG2032|consen 330 KASNDDLESYLLN--IALRLRTLF-DSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYV-AR 405 (533)
T ss_pred hhhhcchhhhchh--HHHHHHHHH-HhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHH-HH
Confidence 322 12122211 233344445 677888888888887777755422 22211 2222223334445566655 45
Q ss_pred HHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHH---HHHHHhhcCChHHHHHHHHCCChHHHHHHhcCC
Q 014945 261 ACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPAL---RTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN 337 (415)
Q Consensus 261 a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~---~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~ 337 (415)
||+.....+.-+-.... . .++++... +.+.. +..+. |++ .+....++...... .....++++.
T Consensus 406 ACr~~~~~c~p~l~rke-~--~~~~q~~l----d~~~~-~~q~Fyn~~c~-~L~~i~~d~l~~~~-----t~~~~~f~ss 471 (533)
T KOG2032|consen 406 ACRSELRTCYPNLVRKE-L--YHLFQESL----DTDMA-RFQAFYNQWCI-QLNHIHPDILMLLL-----TEDQHIFSSS 471 (533)
T ss_pred HHHHHHHhcCchhHHHH-H--HHHHhhhh----HHhHH-HHHHHHHHHHH-HHhhhCHHHHHHHH-----Hhchhheecc
Confidence 66666665533222111 1 12222222 11110 11111 111 11111222222111 1223344444
Q ss_pred CccchHHHHHHHHHHHhcCCHHHHHHHH-HcCCHHHHHHHhccCCHHHHHHHHHHHHHHhC
Q 014945 338 YKKSIKKEACWTISNITAGNVNQIQAII-EAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 397 (415)
Q Consensus 338 ~~~~v~~~a~~~l~nl~~~~~~~~~~l~-~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~ 397 (415)
-+.++..+...-.++..+..+...+.. -.-+...+-.+..++-++++..|..|+..+..
T Consensus 472 -we~vr~aavl~t~~~vd~l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~ 531 (533)
T KOG2032|consen 472 -WEQVREAAVLKTTRSVDSLVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLSV 531 (533)
T ss_pred -hHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHhh
Confidence 456777666666666654222222222 12245566666677889999999999987754
No 190
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=96.37 E-value=0.13 Score=47.74 Aligned_cols=139 Identities=19% Similarity=0.215 Sum_probs=84.2
Q ss_pred HHHHHhhcCCC-hhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcC------CCChhhHHHHHHHHHHhhcCChH
Q 014945 244 PALERLIHSND-DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR------HPSPSVLIPALRTVGNIVTGDDM 316 (415)
Q Consensus 244 ~~l~~lL~~~d-~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~------~~~~~v~~~a~~~l~nl~~~~~~ 316 (415)
+.+-.-+...| ..-+..|+..+..++.........++ ...+..+|. +.++.-+..|+..++.++.....
T Consensus 213 EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~----~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t 288 (370)
T PF08506_consen 213 EYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSIL----MQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGST 288 (370)
T ss_dssp HHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--
T ss_pred HHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhcc
Confidence 33333443333 45677888888888854433322222 222333332 45678888999999999875421
Q ss_pred ------------HHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHH
Q 014945 317 ------------QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEI 384 (415)
Q Consensus 317 ------------~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v 384 (415)
....++...++|-|. - ..+..|-++..|++.+..+-..-+. +.+. +++|.++..|.+++.-|
T Consensus 289 ~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~-~~~~~piLka~aik~~~~Fr~~l~~--~~l~--~~~~~l~~~L~~~~~vv 362 (370)
T PF08506_consen 289 TKSGVTQTNELVDVVDFFSQHVLPELQ-P-DVNSHPILKADAIKFLYTFRNQLPK--EQLL--QIFPLLVNHLQSSSYVV 362 (370)
T ss_dssp BTTB-S-B-TTS-HHHHHHHHTCHHHH---SS-S-HHHHHHHHHHHHHHGGGS-H--HHHH--HHHHHHHHHTTSS-HHH
T ss_pred ccCCcccccccccHHHHHHHHhHHHhc-c-cCCCCcchHHHHHHHHHHHHhhCCH--HHHH--HHHHHHHHHhCCCCcch
Confidence 234455555666665 1 2223778999999999999874332 1222 27999999999999999
Q ss_pred HHHHHHHH
Q 014945 385 KKEAAWAI 392 (415)
Q Consensus 385 ~~~a~~aL 392 (415)
...|+.|+
T Consensus 363 ~tyAA~~i 370 (370)
T PF08506_consen 363 HTYAAIAI 370 (370)
T ss_dssp HHHHHHHH
T ss_pred hhhhhhhC
Confidence 99999875
No 191
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=96.36 E-value=0.49 Score=44.03 Aligned_cols=180 Identities=10% Similarity=0.099 Sum_probs=110.7
Q ss_pred hHHHHHHHHHHHhhhCCCCCchh-hhhchHHHHHHhhcC-CChhHHHHHHHHHHHhccCChHHHHHHHHc--CcHHHHHH
Q 014945 215 SMLRNATWTLSNFCRGKPQPLFE-QTRPALPALERLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEA--GVCPRLVE 290 (415)
Q Consensus 215 ~~~~~a~~~l~~l~~~~~~~~~~-~~~~~l~~l~~lL~~-~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~--~~i~~L~~ 290 (415)
+-+..|+.-|..+........+. ....++..+++.|.+ .++.++.-|++.|..++...+.. +.+. -++..+++
T Consensus 302 ~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~---l~DstE~ai~K~Le 378 (516)
T KOG2956|consen 302 SERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPAR---LFDSTEIAICKVLE 378 (516)
T ss_pred hHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHh---hhchHHHHHHHHHH
Confidence 33444444333333332333333 335667778888877 67888999999999999876644 2222 23445555
Q ss_pred hcCCCChhhHHHHHHH-HHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcC-CHHHHHHHHHcC
Q 014945 291 LLRHPSPSVLIPALRT-VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-NVNQIQAIIEAG 368 (415)
Q Consensus 291 lL~~~~~~v~~~a~~~-l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~-~~~~~~~l~~~~ 368 (415)
.-.+..+.+...|... +.-+++..+.. .+..+..++... +...-..+...+..++.. ..+....++. .
T Consensus 379 aa~ds~~~v~~~Aeed~~~~las~~P~~--------~I~~i~~~Ilt~-D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~-d 448 (516)
T KOG2956|consen 379 AAKDSQDEVMRVAEEDCLTTLASHLPLQ--------CIVNISPLILTA-DEPRAVAVIKMLTKLFERLSAEELLNLLP-D 448 (516)
T ss_pred HHhCCchhHHHHHHHHHHHHHHhhCchh--------HHHHHhhHHhcC-cchHHHHHHHHHHHHHhhcCHHHHHHhhh-h
Confidence 5555555555444443 33344433321 244566666666 666666666678888863 4454444444 4
Q ss_pred CHHHHHHHhccCCHHHHHHHHHHHHHHhCCCC-HHHHHHH
Q 014945 369 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGS-NEQIKYK 407 (415)
Q Consensus 369 ~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~-~~~~~~l 407 (415)
+.|.+++...+.+..||+.|.++|.-+...-. .+.-+||
T Consensus 449 iaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL 488 (516)
T KOG2956|consen 449 IAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHL 488 (516)
T ss_pred hhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHh
Confidence 99999999999999999999999998875433 3333444
No 192
>PRK14707 hypothetical protein; Provisional
Probab=96.35 E-value=1.3 Score=48.99 Aligned_cols=320 Identities=14% Similarity=0.055 Sum_probs=175.8
Q ss_pred cHHHHHHhhcC-CCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhh
Q 014945 72 SLPAMVAGVWS-DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 150 (415)
Q Consensus 72 ~i~~l~~~l~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~ 150 (415)
+|..+++.+.. .+...-..++..|...+... ......+-..|+-..|-.+-+-++.+.....+.++-..++.+ +..+
T Consensus 206 ~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~-~~l~~~~~~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~-~~l~ 283 (2710)
T PRK14707 206 GVATVLNALCKWPDTPDCGNAVSALAERLADE-SRLRNELKPQELGNALNALSKWADTPVCAAAASALAERLVDD-PGLR 283 (2710)
T ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHHHcCc-HHHHHhCChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhh-HHHH
Confidence 45556666653 33333344555555544433 233334444454444445555566334444444444556643 4444
Q ss_pred HHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHH-Hhh
Q 014945 151 RVVIDHGAVPIFVRLLS-SPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLS-NFC 228 (415)
Q Consensus 151 ~~~~~~g~i~~L~~ll~-~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~-~l~ 228 (415)
..+-..+ +...++-|+ -++..+-..|...|..=..+++..+..+ ..-.+...++-|.+-++..+.+.+..+|. .++
T Consensus 284 ~al~~q~-vanalNalSKwpd~~vc~~Aa~~la~rl~~d~~l~~~~-~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~ 361 (2710)
T PRK14707 284 KALDPIN-VTQALNALSKWADLPVCAEAAIALAERLADDPELCKAL-NARGLSTALNALSKWPDNPVCAAAVSALAERLV 361 (2710)
T ss_pred HhcCHHH-HHHHHhhhhcCCCchHHHHHHHHHHHHHhccHhhhhcc-chHHHHHHHHHhhcCCCchhHHHHHHHHHHHhc
Confidence 4443333 333334343 3777777777776665555565554333 33345666777767676666655555554 454
Q ss_pred hCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHH
Q 014945 229 RGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVG 308 (415)
Q Consensus 229 ~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~ 308 (415)
............++-..|..+-+-++..+...+...|..=..++.+..+.+-..|+-..|-.+-+-++..+...+...|+
T Consensus 362 ~d~~l~~~l~~q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~~Q~van~lnalsKWPd~~~C~~aa~~lA 441 (2710)
T PRK14707 362 ADPELRKDLEPQGVSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRKGLDPQGVSNALNALAKWPDLPICGQAVSALA 441 (2710)
T ss_pred cCHhhhcccchhHHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhhhcchhhHHHHHHHhhcCCcchhHHHHHHHHH
Confidence 44333333333455555555556678777777777776655555555444444455555555555677777777777776
Q ss_pred HhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHH-HHHH
Q 014945 309 NIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFE-IKKE 387 (415)
Q Consensus 309 nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~-v~~~ 387 (415)
--...+.+..+.+-..++...|-.+-+.+ +..+...++..|..=....++..+.+-..++...|-.+-+.++.. ....
T Consensus 442 ~~la~d~~l~~~~~p~~va~~LnalSKWP-d~p~c~~aa~~La~~l~~~~~l~~a~~~q~~~~~L~aLSK~Pd~~~c~~A 520 (2710)
T PRK14707 442 GRLAHDTELCKALDPINVTQALDALSKWP-DTPICGQTASALAARLAHERRLRKALKPQEVVIALHSLSKWPDTPICAEA 520 (2710)
T ss_pred HHHhccHHHHhhcChHHHHHHHHHhhcCC-CChhHHHHHHHHHHHhcccHHHHhhcCHHHHHHHHHHhhcCCCcHHHHHH
Confidence 66555554444333335555555566777 777887777777655555566555555555666666666666644 4444
Q ss_pred HHHHHHHHh
Q 014945 388 AAWAISNAT 396 (415)
Q Consensus 388 a~~aL~nl~ 396 (415)
+.|.-..+.
T Consensus 521 ~~~lA~rl~ 529 (2710)
T PRK14707 521 ASALAERVV 529 (2710)
T ss_pred HHHHHHHhc
Confidence 555555544
No 193
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=96.34 E-value=0.2 Score=46.63 Aligned_cols=141 Identities=13% Similarity=0.206 Sum_probs=103.9
Q ss_pred CchhHHHh-cCchHHHHHhhcCCCC--hHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhC-C---CCHHHHHHH
Q 014945 105 PPINEVIQ-SGVVPRFIEFLSRDDF--PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLS-S---PTDDVREQA 177 (415)
Q Consensus 105 ~~~~~~~~-~g~i~~L~~ll~~~~~--~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~-~---~~~~v~~~a 177 (415)
...+.+++ +.++..|...+++... +.+-..|+.++..+....|..-..+.+.|+++.+++.+. . ++.++....
T Consensus 96 ~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~l 175 (379)
T PF06025_consen 96 DRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSL 175 (379)
T ss_pred cccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHH
Confidence 33445666 6667777788877542 688899999999999988999999999999999999887 4 567777777
Q ss_pred HHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhH------hHHHHHHHHHHHhhhCCCCCchhhhhchHHHH
Q 014945 178 VWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKL------SMLRNATWTLSNFCRGKPQPLFEQTRPALPAL 246 (415)
Q Consensus 178 ~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~------~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l 246 (415)
-.+|+.||-+... .+.+.+.+.++.++.++.+.... +.....-..+-.|.++.|......+..++..+
T Consensus 176 P~~l~AicLN~~G-l~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~Lk~~i~~~ii~~l 249 (379)
T PF06025_consen 176 PNVLSAICLNNRG-LEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHPSLKPDIIDAIIKIL 249 (379)
T ss_pred HHHHhHHhcCHHH-HHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 8888889887774 57788889999999998433322 34455566677788877665555444444433
No 194
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=96.30 E-value=0.0052 Score=34.10 Aligned_cols=30 Identities=27% Similarity=0.422 Sum_probs=26.0
Q ss_pred ChHHHHHHhcCCCccchHHHHHHHHHHHhcC
Q 014945 326 ALPCLLDLLTQNYKKSIKKEACWTISNITAG 356 (415)
Q Consensus 326 ~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~ 356 (415)
++|.+.++++++ +++||..|+++|+.++.+
T Consensus 1 llp~l~~~l~D~-~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDP-SPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-S-SHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCC-CHHHHHHHHHHHHHHHhh
Confidence 378999999999 999999999999999753
No 195
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=96.18 E-value=0.11 Score=52.65 Aligned_cols=187 Identities=14% Similarity=0.102 Sum_probs=131.1
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhh
Q 014945 160 PIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQT 239 (415)
Q Consensus 160 ~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~ 239 (415)
+.+..-+.+++..-+-.|+..+..+..... ........|.+..++.....+.|..+...++.+|..++..-........
T Consensus 256 ~~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~ 334 (815)
T KOG1820|consen 256 KNLETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYA 334 (815)
T ss_pred hHHHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHH
Confidence 344444556677778888888887776554 1111112334555666666778999999999999999987655555666
Q ss_pred hchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChH-HH
Q 014945 240 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM-QT 318 (415)
Q Consensus 240 ~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~-~~ 318 (415)
...+|.+++-+......++..+..++-.++.... -..+.+.+...+.+.++.++..+...+.......+. ..
T Consensus 335 ~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~-------l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~ 407 (815)
T KOG1820|consen 335 KNVFPSLLDRLKEKKSELRDALLKALDAILNSTP-------LSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTV 407 (815)
T ss_pred HhhcchHHHHhhhccHHHHHHHHHHHHHHHhccc-------HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCc
Confidence 7888999999888877777666666655443221 123568888999999999999988888877765441 11
Q ss_pred HHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhc
Q 014945 319 QCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 355 (415)
Q Consensus 319 ~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~ 355 (415)
..---.+++|.++....+. +..||..|..+++-+..
T Consensus 408 ~~~t~~~l~p~~~~~~~D~-~~~VR~Aa~e~~~~v~k 443 (815)
T KOG1820|consen 408 EKETVKTLVPHLIKHINDT-DKDVRKAALEAVAAVMK 443 (815)
T ss_pred chhhHHHHhHHHhhhccCC-cHHHHHHHHHHHHHHHH
Confidence 1112236788899999888 99999999999988775
No 196
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=96.17 E-value=0.15 Score=44.05 Aligned_cols=100 Identities=17% Similarity=0.138 Sum_probs=84.4
Q ss_pred hhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHh
Q 014945 298 SVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLL 377 (415)
Q Consensus 298 ~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l 377 (415)
.....|++.|.-++--.+.....+-....+..++.++.....+.++..+..+|..+...++.+...+-+.+++..++.++
T Consensus 106 ~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ll 185 (257)
T PF08045_consen 106 SLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLL 185 (257)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHH
Confidence 35666888888888877777787888899999999996554789999999999999999999999888999999999999
Q ss_pred ccC--CHHHHHHHHHHHHHHhC
Q 014945 378 LNA--EFEIKKEAAWAISNATS 397 (415)
Q Consensus 378 ~~~--~~~v~~~a~~aL~nl~~ 397 (415)
++. +.+++..++..|.-...
T Consensus 186 k~~~~~~~~r~K~~EFL~fyl~ 207 (257)
T PF08045_consen 186 KSKSTDRELRLKCIEFLYFYLM 207 (257)
T ss_pred ccccccHHHhHHHHHHHHHHHc
Confidence 974 56788888888877663
No 197
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=96.15 E-value=0.37 Score=44.85 Aligned_cols=216 Identities=13% Similarity=0.188 Sum_probs=133.1
Q ss_pred HHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHH---HhcC--CC-chhHHHHHhcCChHHHHHH
Q 014945 134 EAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALG---NVAG--DS-PKCRDLVLSNGALMPLLAQ 207 (415)
Q Consensus 134 ~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~---nl~~--~~-~~~~~~~~~~g~i~~L~~~ 207 (415)
.|+.+|-.+....+.....+.+.+++..++..+..+- -.++. +... .. ++.+..... -..
T Consensus 3 ~av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~Ev-------~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~ 68 (379)
T PF06025_consen 3 RAVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYEV-------DFALEENKNEEAGSGIPPEYKESSVD-------GYS 68 (379)
T ss_pred HHHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHHH-------HHHHhcccccCCCCCCCCCccccccc-------ccc
Confidence 4667777777776777788888999999998885421 12222 1110 00 111000000 000
Q ss_pred hccchhHhHHHHHHHHHHHhhh-CC-CCCch-hhh--hchHHHHHHhhcCC---ChhHHHHHHHHHHHhccCChHHHHHH
Q 014945 208 FNEHAKLSMLRNATWTLSNFCR-GK-PQPLF-EQT--RPALPALERLIHSN---DDEVLTDACWALSYLSDGTNDKIQAV 279 (415)
Q Consensus 208 l~~~~~~~~~~~a~~~l~~l~~-~~-~~~~~-~~~--~~~l~~l~~lL~~~---d~~v~~~a~~~l~~l~~~~~~~~~~~ 279 (415)
+ ......+.+..+.++..+.. .. ..... ..+ ..++..|...+++. -+.+...|+..+..+..+++.....+
T Consensus 69 i-~~~r~~llK~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l 147 (379)
T PF06025_consen 69 I-SYQRQQLLKSLLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSIL 147 (379)
T ss_pred c-CHHHHHHHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHH
Confidence 1 11223344555555555555 22 11111 112 34455666677665 37899999999999999999888989
Q ss_pred HHcCcHHHHHHhcC-C---CChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccc--hHH-HHHHHHH-
Q 014945 280 IEAGVCPRLVELLR-H---PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKS--IKK-EACWTIS- 351 (415)
Q Consensus 280 ~~~~~i~~L~~lL~-~---~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~--v~~-~a~~~l~- 351 (415)
.+.|+++.+++.+. . ++.++....-.+++.||-... ..+.+.+.+.++.+++++.++ +.- .+. +.+..++
T Consensus 148 ~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~~-Gl~~~~~~~~l~~~f~if~s~-~~~~~l~~~d~a~~lG~ 225 (379)
T PF06025_consen 148 QEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLNNR-GLEKVKSSNPLDKLFEIFTSP-DYVKALRRRDTASNLGN 225 (379)
T ss_pred HHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcCHH-HHHHHHhcChHHHHHHHhCCH-HHHHHhcccchHHHHHH
Confidence 99999999999887 3 345677777788999998654 677788899999999999877 321 111 3444444
Q ss_pred ---HHhcCCHHHHHHHHH
Q 014945 352 ---NITAGNVNQIQAIIE 366 (415)
Q Consensus 352 ---nl~~~~~~~~~~l~~ 366 (415)
.+..+.|.-...+++
T Consensus 226 ~~DEL~RH~p~Lk~~i~~ 243 (379)
T PF06025_consen 226 SFDELMRHHPSLKPDIID 243 (379)
T ss_pred HHHHHHccCHHHHHHHHH
Confidence 455566665555444
No 198
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=96.13 E-value=0.063 Score=43.28 Aligned_cols=146 Identities=10% Similarity=0.080 Sum_probs=89.0
Q ss_pred chHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHH
Q 014945 115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDL 194 (415)
Q Consensus 115 ~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 194 (415)
+++.|+++|+.+.+..+|.+++++|+.|..-+|...+.+... .+.-. -...+........... ++.... +.
T Consensus 11 LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~--~~~~~--~~~~~~~~~~~~l~~~-~~~~~~----ee 81 (160)
T PF11865_consen 11 LLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKS--LDSKS--SENSNDESTDISLPMM-GISPSS----EE 81 (160)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhccccc--CCccc--cccccccchhhHHhhc-cCCCch----HH
Confidence 578888999887668999999999999998766544432221 11000 0111111222222111 111111 23
Q ss_pred HHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhc
Q 014945 195 VLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLS 269 (415)
Q Consensus 195 ~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~ 269 (415)
..-..++..|++.|++..-..-...++.++.++..............++|.++..+++.++..++...+-++.+.
T Consensus 82 ~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 82 YYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLV 156 (160)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 333346788899885544444555677777777765544446777889999999998777787777776666554
No 199
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=96.11 E-value=0.35 Score=47.46 Aligned_cols=141 Identities=14% Similarity=0.178 Sum_probs=99.3
Q ss_pred chhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhc-CCCChhhHHHHHHHHHHhhcC
Q 014945 235 LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-RHPSPSVLIPALRTVGNIVTG 313 (415)
Q Consensus 235 ~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL-~~~~~~v~~~a~~~l~nl~~~ 313 (415)
.......++|.|...+++.+..++..++..+..+++.-+. .+++.-++|++..+. .+.+..++..++-|++.++..
T Consensus 383 ~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~---~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~ 459 (700)
T KOG2137|consen 383 PEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDV---PFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQR 459 (700)
T ss_pred hHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccH---HHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHH
Confidence 3445578889888999999999999999999988876552 255566788888774 566789999999999999843
Q ss_pred ChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHH
Q 014945 314 DDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEI 384 (415)
Q Consensus 314 ~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v 384 (415)
-+. ..++ ..+..+.+..+.. ++.+......+.-++....+.. ..++...++|.++-+...+...+
T Consensus 460 lD~--~~v~--d~~lpi~~~~~~~-dp~iv~~~~~i~~~l~~~~~~g-~ev~~~~VlPlli~ls~~~~L~~ 524 (700)
T KOG2137|consen 460 LDK--AAVL--DELLPILKCIKTR-DPAIVMGFLRIYEALALIIYSG-VEVMAENVLPLLIPLSVAPSLNG 524 (700)
T ss_pred HHH--HHhH--HHHHHHHHHhcCC-CcHHHHHHHHHHHHHHhhcccc-eeeehhhhhhhhhhhhhcccccH
Confidence 221 1122 2355566666777 8888888888777777643332 34455568888888776654333
No 200
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=96.11 E-value=0.88 Score=43.05 Aligned_cols=260 Identities=13% Similarity=0.134 Sum_probs=146.2
Q ss_pred HHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCC-
Q 014945 90 DATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS- 168 (415)
Q Consensus 90 ~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~- 168 (415)
.+-..|..++......+.+..++..++..|+.+++++| +.-|...-.+|.++-......+..+.. .+...+.+++..
T Consensus 109 ~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D-~rER~~lk~~l~~iy~k~~~~r~~Ir~-~i~~~~~~fi~e~ 186 (409)
T PF01603_consen 109 LVYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPD-PRERDYLKTILHRIYGKFPNLRSFIRK-SINNIFYRFIYET 186 (409)
T ss_dssp HHHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSST-HHHHHHHHHHHHHHHHH-TTTHHHHHH-HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHhcCc
Confidence 34455555554332223444667778999999999999 999999999998877655556555544 455667777664
Q ss_pred CCHHHHHHHHHHHHHhcCCCc-hhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHH
Q 014945 169 PTDDVREQAVWALGNVAGDSP-KCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALE 247 (415)
Q Consensus 169 ~~~~v~~~a~~~L~nl~~~~~-~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~ 247 (415)
....-...++..++.+..+-. ..+..... =....++.+.....-.........++..++..++... ..++..++
T Consensus 187 ~~~~gI~elLeil~sii~gf~~plk~eh~~-fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~----~~~i~~ll 261 (409)
T PF01603_consen 187 ERHNGIAELLEILGSIINGFAVPLKEEHKQ-FLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLA----EPVIKGLL 261 (409)
T ss_dssp S--STHHHHHHHHHHHHTT--SS--HHHHH-HHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGH----HHHHHHHH
T ss_pred ccccCHHHHHHHHHHHHhccCCCCcHHHHH-HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhH----HHHHHHHH
Confidence 344456678888888876522 12222111 0122334444222333445666666666665543221 22333333
Q ss_pred HhhcCCChhHHHHHHHHHHHhccCCh-HHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHC--
Q 014945 248 RLIHSNDDEVLTDACWALSYLSDGTN-DKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINH-- 324 (415)
Q Consensus 248 ~lL~~~d~~v~~~a~~~l~~l~~~~~-~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~-- 324 (415)
..=-..+..-..--+.-+..+...-+ .... -+...+...+...+.+++..|.+.|+....| +... .++..
T Consensus 262 k~WP~t~s~Kev~FL~el~~il~~~~~~~f~-~i~~~lf~~la~ci~S~h~qVAErAl~~w~n-----~~~~-~li~~~~ 334 (409)
T PF01603_consen 262 KHWPKTNSQKEVLFLNELEEILEVLPPEEFQ-KIMVPLFKRLAKCISSPHFQVAERALYFWNN-----EYFL-SLISQNS 334 (409)
T ss_dssp HHS-SS-HHHHHHHHHHHHHHHTT--HHHHH-HHHHHHHHHHHHHHTSSSHHHHHHHHGGGGS-----HHHH-HHHHCTH
T ss_pred HhCCCCCchhHHHHHHHHHHHHHhcCHHHHH-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHCC-----HHHH-HHHHhCh
Confidence 33333444434444445555554332 2222 2223467888888899999999999866533 2222 23322
Q ss_pred -CChHHHHHHhcCC----CccchHHHHHHHHHHHhcCCHHHHHH
Q 014945 325 -QALPCLLDLLTQN----YKKSIKKEACWTISNITAGNVNQIQA 363 (415)
Q Consensus 325 -~~l~~L~~ll~~~----~~~~v~~~a~~~l~nl~~~~~~~~~~ 363 (415)
.++|.+..-+... =+..|+..|..++.-+..-++...+.
T Consensus 335 ~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~d~~lf~~ 378 (409)
T PF01603_consen 335 RVILPIIFPALYRNSKNHWNQTVRNLAQNVLKILMEMDPKLFDK 378 (409)
T ss_dssp HHHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHTTSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 3577777766432 15689999999999998877775544
No 201
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=96.09 E-value=0.23 Score=48.43 Aligned_cols=143 Identities=18% Similarity=0.172 Sum_probs=107.1
Q ss_pred chHHHHHhhcC----CCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhcCCCc
Q 014945 115 VVPRFIEFLSR----DDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLS-SPTDDVREQAVWALGNVAGDSP 189 (415)
Q Consensus 115 ~i~~L~~ll~~----~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~v~~~a~~~L~nl~~~~~ 189 (415)
+-|...+...+ ++ +.++..|.-+|..+..-+.++.. ..+|.|+..+. +++|.++..|+-.+|.++..-.
T Consensus 893 F~pvVeE~csn~~~~sd-~~lq~aA~l~L~klMClS~~fc~-----ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN 966 (1128)
T COG5098 893 FKPVVEEGCSNSSRFSD-EELQVAAYLSLYKLMCLSFEFCS-----EHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFN 966 (1128)
T ss_pred hhHHHHHHhccccccCC-HHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHhhCCCcceeccceeeccccceehh
Confidence 44555555555 34 89999999999988775555443 35899999887 7999999999999998875433
Q ss_pred hhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhc
Q 014945 190 KCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLS 269 (415)
Q Consensus 190 ~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~ 269 (415)
...+. .-..|.+.| .+.+..+++.+..++.+|.... ...+.|-++.++.+|.++|..+..-|-..+..++
T Consensus 967 ~~~de-----~t~yLyrrL-~De~~~V~rtclmti~fLilag----q~KVKGqlg~ma~~L~deda~Isdmar~fft~~a 1036 (1128)
T COG5098 967 TTADE-----HTHYLYRRL-GDEDADVRRTCLMTIHFLILAG----QLKVKGQLGKMALLLTDEDAEISDMARHFFTQIA 1036 (1128)
T ss_pred hhhHH-----HHHHHHHHh-cchhhHHHHHHHHHHHHHHHcc----ceeeccchhhhHhhccCCcchHHHHHHHHHHHHH
Confidence 32222 345677777 7788999999999999988653 2344688899999999999998877777777777
Q ss_pred cCCh
Q 014945 270 DGTN 273 (415)
Q Consensus 270 ~~~~ 273 (415)
..+.
T Consensus 1037 ~KdN 1040 (1128)
T COG5098 1037 KKDN 1040 (1128)
T ss_pred hccc
Confidence 6544
No 202
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=96.07 E-value=0.94 Score=40.01 Aligned_cols=203 Identities=12% Similarity=0.110 Sum_probs=130.4
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchh----HHHHHhcCChHHHHHHhccch-hHhHHHHHHHHHH
Q 014945 151 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC----RDLVLSNGALMPLLAQFNEHA-KLSMLRNATWTLS 225 (415)
Q Consensus 151 ~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~----~~~~~~~g~i~~L~~~l~~~~-~~~~~~~a~~~l~ 225 (415)
..+.++|.+..++..+..-+-+-+..++.+..|+-...-+. .+.+.. -.+.+-.++.... .+++.-++...+.
T Consensus 73 qef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t--~~e~~~~lv~~~~~~~~iaL~cg~mlr 150 (342)
T KOG1566|consen 73 QEFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLET--NPEILDNLVKGYENTPEIALTCGNMLR 150 (342)
T ss_pred HHHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHh--CHHHHHHHHhhhccchHHHHHHHHHHH
Confidence 34567788999999998877777777777777775332211 222221 2223333332222 2444444444444
Q ss_pred HhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCc----HHHHHHhcCCCChhhHH
Q 014945 226 NFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGV----CPRLVELLRHPSPSVLI 301 (415)
Q Consensus 226 ~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~----i~~L~~lL~~~~~~v~~ 301 (415)
...++..-........-+......++.+.-++..+|..++..+.......+..++..+. .+.--.++.+.+.-++.
T Consensus 151 Ecirhe~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkr 230 (342)
T KOG1566|consen 151 ECIRHEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKR 230 (342)
T ss_pred HHHhhHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHH
Confidence 44444322222333455556666777777889999999998887554444444554433 33356667888888999
Q ss_pred HHHHHHHHhhcCCh---HHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcC
Q 014945 302 PALRTVGNIVTGDD---MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG 356 (415)
Q Consensus 302 ~a~~~l~nl~~~~~---~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~ 356 (415)
.++..+|.+..+.+ ..++++-...-+..++.+|.++ +..++-+|..+..-+.++
T Consensus 231 qs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdk-skniQ~eAFhvFKvfvAn 287 (342)
T KOG1566|consen 231 QSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDK-SKNIQLEAFHVFKVFVAN 287 (342)
T ss_pred HHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCc-cccchHHHHHHHHHHhcC
Confidence 99999999987654 2334444446788999999999 999999999999888873
No 203
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=96.07 E-value=0.021 Score=45.92 Aligned_cols=148 Identities=20% Similarity=0.171 Sum_probs=97.4
Q ss_pred ChHHHHHHhcc-chhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHH
Q 014945 200 ALMPLLAQFNE-HAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQA 278 (415)
Q Consensus 200 ~i~~L~~~l~~-~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~ 278 (415)
.+..++..|.. ....+++..++-++..+.. .........+-+.+...+...+.+-...++.++..+-...++....
T Consensus 4 ~l~~lL~~L~~~~~~~~~r~~a~v~l~k~l~---~~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~ 80 (157)
T PF11701_consen 4 ELDTLLTSLDMLRQPEEVRSHALVILSKLLD---AAREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSE 80 (157)
T ss_dssp CCCHHHHHHHCTTTSCCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHH
T ss_pred HHHHHHHHhcccCCCHhHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHH
Confidence 34455666533 4567788888888887741 1111222333445555555555556677888888888887765544
Q ss_pred H-HHcCcHHHHHHhcC--CCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccc-hHHHHHHHHHH
Q 014945 279 V-IEAGVCPRLVELLR--HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKS-IKKEACWTISN 352 (415)
Q Consensus 279 ~-~~~~~i~~L~~lL~--~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~-v~~~a~~~l~n 352 (415)
+ ...|+++.+..+.. ..+..+...++.+|..-|. .... ...+...+++.|-..++.++++. +|..|+-+|.-
T Consensus 81 l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~-d~~~-r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 81 LFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACI-DKSC-RTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp HCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTT-SHHH-HHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHc-cHHH-HHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 4 46699999999998 7788889999999877665 3334 44555578899999996553566 88888877753
No 204
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=96.00 E-value=0.24 Score=46.73 Aligned_cols=253 Identities=12% Similarity=0.065 Sum_probs=144.6
Q ss_pred HHHHHHHHHhCCCchh-hHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccch
Q 014945 134 EAAWALTNIASGTSEN-TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA 212 (415)
Q Consensus 134 ~a~~~L~~l~~~~~~~-~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~ 212 (415)
.+-..|..+....+.. ....++...+..|+.+++++|+.-|+....+|.++.+.-+..|..+.. .....+.+.+....
T Consensus 109 ~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~-~i~~~~~~fi~e~~ 187 (409)
T PF01603_consen 109 LVYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRK-SINNIFYRFIYETE 187 (409)
T ss_dssp HHHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHH-HHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHhcCcc
Confidence 3444555554432221 222344456888999999999999999999999987655555555544 24556666664455
Q ss_pred hHhHHHHHHHHHHHhhhCCCCC-chhhhhchHHHHHHhhcCCC-hhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHH
Q 014945 213 KLSMLRNATWTLSNFCRGKPQP-LFEQTRPALPALERLIHSND-DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVE 290 (415)
Q Consensus 213 ~~~~~~~a~~~l~~l~~~~~~~-~~~~~~~~l~~l~~lL~~~d-~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ 290 (415)
...-...++..++.+..+...+ ......-+...++.+...+. .........++..++..++..... ++..++.
T Consensus 188 ~~~gI~elLeil~sii~gf~~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~-----~i~~llk 262 (409)
T PF01603_consen 188 RHNGIAELLEILGSIINGFAVPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEP-----VIKGLLK 262 (409)
T ss_dssp --STHHHHHHHHHHHHTT--SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHH-----HHHHHHH
T ss_pred cccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHH-----HHHHHHH
Confidence 6667788888888888875322 23333344456666666554 233455555555555555444332 2333444
Q ss_pred hcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHc---
Q 014945 291 LLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEA--- 367 (415)
Q Consensus 291 lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~--- 367 (415)
.=-..+..=...-+.-+..+....+...-.-+..-+...+...+++. +..|.+.|+....| +. +-.++..
T Consensus 263 ~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~-h~qVAErAl~~w~n-----~~-~~~li~~~~~ 335 (409)
T PF01603_consen 263 HWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSP-HFQVAERALYFWNN-----EY-FLSLISQNSR 335 (409)
T ss_dssp HS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSS-SHHHHHHHHGGGGS-----HH-HHHHHHCTHH
T ss_pred hCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHCC-----HH-HHHHHHhChH
Confidence 43334444445566667777664432222222335677888888888 88888888766532 11 2222221
Q ss_pred CCHHHHHHHhcc-----CCHHHHHHHHHHHHHHhCCC
Q 014945 368 GIIGPLVNLLLN-----AEFEIKKEAAWAISNATSGG 399 (415)
Q Consensus 368 ~~i~~L~~~l~~-----~~~~v~~~a~~aL~nl~~~~ 399 (415)
.++|.+...+.. =+..|+..|..++.-+....
T Consensus 336 ~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~d 372 (409)
T PF01603_consen 336 VILPIIFPALYRNSKNHWNQTVRNLAQNVLKILMEMD 372 (409)
T ss_dssp HHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 156666666543 14679999999998888763
No 205
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.97 E-value=0.63 Score=45.60 Aligned_cols=113 Identities=18% Similarity=0.180 Sum_probs=82.5
Q ss_pred CchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHh
Q 014945 105 PPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNV 184 (415)
Q Consensus 105 ~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl 184 (415)
+....++ .|++..+++...+.+ ..+|+.++.+|..+.....+.-+.+.+ +....+..-+.+..+.|+.+|+.+|+.+
T Consensus 77 d~e~DlV-~~~f~hlLRg~Eskd-k~VRfrvlqila~l~d~~~eidd~vfn-~l~e~l~~Rl~Drep~VRiqAv~aLsrl 153 (892)
T KOG2025|consen 77 DKEEDLV-AGTFYHLLRGTESKD-KKVRFRVLQILALLSDENAEIDDDVFN-KLNEKLLIRLKDREPNVRIQAVLALSRL 153 (892)
T ss_pred CchhhHH-HHHHHHHHhcccCcc-hhHHHHHHHHHHHHhccccccCHHHHH-HHHHHHHHHHhccCchHHHHHHHHHHHH
Confidence 3333443 356778888888888 899999999999998854444444443 5666666666677889999999999999
Q ss_pred cCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHH
Q 014945 185 AGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLS 225 (415)
Q Consensus 185 ~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~ 225 (415)
-++...- +..+...+..+++++++.++++.++..+.
T Consensus 154 Q~d~~de-----e~~v~n~l~~liqnDpS~EVRRaaLsnI~ 189 (892)
T KOG2025|consen 154 QGDPKDE-----ECPVVNLLKDLIQNDPSDEVRRAALSNIS 189 (892)
T ss_pred hcCCCCC-----cccHHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence 8544321 23366788888888899999998776544
No 206
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=95.93 E-value=0.089 Score=43.79 Aligned_cols=111 Identities=16% Similarity=0.164 Sum_probs=77.5
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCC--------CChHHHHHHHHHHHHHh
Q 014945 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRD--------DFPQLQFEAAWALTNIA 143 (415)
Q Consensus 72 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~--------~~~~i~~~a~~~L~~l~ 143 (415)
....+++.+.+..... ..+..|+..+......-++.+++.|++..|+.+|..- ........++.||..|.
T Consensus 67 ~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~ 144 (187)
T PF06371_consen 67 SPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALM 144 (187)
T ss_dssp HHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHH
Confidence 3456778887655432 4455555555543223356788889999999887631 12578899999999988
Q ss_pred CCCchhhHHHHh-CCChHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 014945 144 SGTSENTRVVID-HGAVPIFVRLLSSPTDDVREQAVWALGNVA 185 (415)
Q Consensus 144 ~~~~~~~~~~~~-~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~ 185 (415)
.. ......+++ .+++..++..|.+++..++..++..|+.+|
T Consensus 145 n~-~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 145 NT-KYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp SS-HHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred cc-HHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 75 455666665 688999999999999999999999998876
No 207
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=95.92 E-value=1.1 Score=39.47 Aligned_cols=225 Identities=14% Similarity=0.106 Sum_probs=138.3
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhcc-chhHhHHHHHHHHHHHhhhCCCCCchhhh
Q 014945 161 IFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE-HAKLSMLRNATWTLSNFCRGKPQPLFEQT 239 (415)
Q Consensus 161 ~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~-~~~~~~~~~a~~~l~~l~~~~~~~~~~~~ 239 (415)
.|-..|.++++.+|..|+.+|+.+...-+.. . +...-+..|+..+.+ -.|......++.++..|...+ .......
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~--~-L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~-~~~~~~~ 78 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLPPD--F-LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMK-NFSPESA 78 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCCHh--h-ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCc-CCChhhH
Confidence 4556788899999999999999987665521 1 222235555555422 135555666677777777543 2222223
Q ss_pred hchHHHHHHhhcC--CChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCC-CChhhHHHHHHHHHHhhcCChH
Q 014945 240 RPALPALERLIHS--NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-PSPSVLIPALRTVGNIVTGDDM 316 (415)
Q Consensus 240 ~~~l~~l~~lL~~--~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~-~~~~v~~~a~~~l~nl~~~~~~ 316 (415)
..++..+.+..+. .....|..+...+..+.....+.... ...+++..+++.... .||.-...+...+..+....+.
T Consensus 79 ~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~-~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~ 157 (262)
T PF14500_consen 79 VKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQS-MGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDI 157 (262)
T ss_pred HHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHh-chhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc
Confidence 4444454443332 24667888888888887665443321 223567777777754 4777777777777777665441
Q ss_pred HHHHHHHCCChHHHHHHhc--------CCC-cc--chHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHH
Q 014945 317 QTQCIINHQALPCLLDLLT--------QNY-KK--SIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIK 385 (415)
Q Consensus 317 ~~~~~~~~~~l~~L~~ll~--------~~~-~~--~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~ 385 (415)
....+.+.+.+. .+. ++ -.+..-...|.+....++.... -.+|.|++-|.++.+.++
T Consensus 158 -------~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa~-----~~~p~LleKL~s~~~~~K 225 (262)
T PF14500_consen 158 -------SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFAP-----FAFPLLLEKLDSTSPSVK 225 (262)
T ss_pred -------chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhHH-----HHHHHHHHHHcCCCcHHH
Confidence 122333333331 111 22 3455666667766665554322 268999999999999999
Q ss_pred HHHHHHHHHHhCCCCHH
Q 014945 386 KEAAWAISNATSGGSNE 402 (415)
Q Consensus 386 ~~a~~aL~nl~~~~~~~ 402 (415)
..++.+|..++..-+..
T Consensus 226 ~D~L~tL~~c~~~y~~~ 242 (262)
T PF14500_consen 226 LDSLQTLKACIENYGAD 242 (262)
T ss_pred HHHHHHHHHHHHHCCHH
Confidence 99999999998654443
No 208
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.84 E-value=3.3 Score=44.46 Aligned_cols=80 Identities=13% Similarity=0.158 Sum_probs=54.1
Q ss_pred hhHHHHHHHHHHhhcCCh-----------HHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHH
Q 014945 298 SVLIPALRTVGNIVTGDD-----------MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE 366 (415)
Q Consensus 298 ~v~~~a~~~l~nl~~~~~-----------~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~ 366 (415)
......+.++|-++...+ .+....+..+++..|..+.++. +..+|..|...++.+|...+. .+.+
T Consensus 1187 p~l~RsiftlG~l~Ryfdf~~~~~~g~~~~~~~~~~~e~v~~lL~~f~k~~-~~~lR~~al~~Lg~~ci~hp~---l~~~ 1262 (1692)
T KOG1020|consen 1187 PKLQRSIFTLGLLSRYFDFPKPSNDGKTFLQEGETLKEKVLILLMYFSKDK-DGELRRKALINLGFICIQHPS---LFTS 1262 (1692)
T ss_pred HHHHHHHHHHHHHHHhccCCCccCCCccchhhhhhHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHhhCch---hhhh
Confidence 456678889998887321 1112234457778888888888 899999999999999985554 3444
Q ss_pred cCCHHHHHHHhccCC
Q 014945 367 AGIIGPLVNLLLNAE 381 (415)
Q Consensus 367 ~~~i~~L~~~l~~~~ 381 (415)
..+...+...+.+.+
T Consensus 1263 ~~v~nly~~ila~~n 1277 (1692)
T KOG1020|consen 1263 REVLNLYDEILADDN 1277 (1692)
T ss_pred HHHHHHHHHHHhhhc
Confidence 445555666666543
No 209
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=95.84 E-value=0.086 Score=42.40 Aligned_cols=136 Identities=20% Similarity=0.176 Sum_probs=91.8
Q ss_pred CCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHH-HCCChHHH
Q 014945 252 SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCII-NHQALPCL 330 (415)
Q Consensus 252 ~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~-~~~~l~~L 330 (415)
...++++..+.-++..+-+. ...-...-+-+.+-..+...+.+-...++.+++.+-.+.++....++ ..|+++.+
T Consensus 16 ~~~~~~r~~a~v~l~k~l~~----~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l 91 (157)
T PF11701_consen 16 RQPEEVRSHALVILSKLLDA----AREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESL 91 (157)
T ss_dssp TTSCCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHH
T ss_pred CCCHhHHHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHH
Confidence 35677888888888777411 11122223344555555555556778888999999998887776666 55999999
Q ss_pred HHHhc--CCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhcc-CCHH-HHHHHHHHHHH
Q 014945 331 LDLLT--QNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN-AEFE-IKKEAAWAISN 394 (415)
Q Consensus 331 ~~ll~--~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~-~~~~-v~~~a~~aL~n 394 (415)
..++. .. +..+...++.+++.-|. +...+.. +..++++.|-+.++. ++.. ++..|+-+|+.
T Consensus 92 ~~~~~~~~~-~~~~~~~~lell~aAc~-d~~~r~~-I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 92 LPLASRKSK-DRKVQKAALELLSAACI-DKSCRTF-ISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp HHHHH-CTS--HHHHHHHHHHHHHHTT-SHHHHHC-CHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HHHHhcccC-CHHHHHHHHHHHHHHHc-cHHHHHH-HHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 99998 55 77777777777766654 4554444 444489999999964 5455 78888877764
No 210
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=95.83 E-value=0.03 Score=54.33 Aligned_cols=183 Identities=15% Similarity=0.168 Sum_probs=120.3
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhH
Q 014945 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 151 (415)
Q Consensus 72 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~ 151 (415)
.+|.+++++.+.|..+|..=+..+-++. ....+.+++.-++|.+..-+.+.+ +.++.+++.++..++.-=. .
T Consensus 331 i~p~l~kLF~~~Dr~iR~~LL~~i~~~i----~~Lt~~~~~d~I~phv~~G~~DTn-~~Lre~Tlksm~~La~kL~---~ 402 (690)
T KOG1243|consen 331 IIPVLLKLFKSPDRQIRLLLLQYIEKYI----DHLTKQILNDQIFPHVALGFLDTN-ATLREQTLKSMAVLAPKLS---K 402 (690)
T ss_pred hhhhHHHHhcCcchHHHHHHHHhHHHHh----hhcCHHhhcchhHHHHHhhcccCC-HHHHHHHHHHHHHHHhhhc---h
Confidence 4677888888888877776666665553 233455667778888888888887 8888888888887775211 1
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCC-CchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhC
Q 014945 152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGD-SPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 230 (415)
Q Consensus 152 ~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~-~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~ 230 (415)
...+...+..+-++-.+++..++....-||+.++.. .+..|+.+ ...++.+.+ .++-...+..+.+++...+..
T Consensus 403 ~~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~R~~v----L~~aftral-kdpf~paR~a~v~~l~at~~~ 477 (690)
T KOG1243|consen 403 RNLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASVRKRV----LASAFTRAL-KDPFVPARKAGVLALAATQEY 477 (690)
T ss_pred hhhcHHHHHHHHhhCccccCcccccceeeecccccccchhhhccc----cchhhhhhh-cCCCCCchhhhhHHHhhcccc
Confidence 133334455555555556677888888888888765 33333333 233455545 555566677777777766654
Q ss_pred CCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhc
Q 014945 231 KPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLS 269 (415)
Q Consensus 231 ~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~ 269 (415)
-........++|.+..+.-+++..++..+..++...-
T Consensus 478 --~~~~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl 514 (690)
T KOG1243|consen 478 --FDQSEVANKILPSLVPLTVDPEKTVRDTAEKAIRQFL 514 (690)
T ss_pred --cchhhhhhhccccccccccCcccchhhHHHHHHHHHH
Confidence 3334455678888888888888888888777665543
No 211
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=95.83 E-value=2.3 Score=43.48 Aligned_cols=238 Identities=18% Similarity=0.216 Sum_probs=137.5
Q ss_pred hcCchHHHHHhhcCCC----ChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhC----CCC----HHHHHHHHH
Q 014945 112 QSGVVPRFIEFLSRDD----FPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLS----SPT----DDVREQAVW 179 (415)
Q Consensus 112 ~~g~i~~L~~ll~~~~----~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~----~~~----~~v~~~a~~ 179 (415)
+.|++..++.++.+-. ........+..|...+. -+.+++.+++.|+++.|+..+. .+. ..+.+..+.
T Consensus 115 ~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~K-v~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~ 193 (802)
T PF13764_consen 115 ECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCK-VKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLE 193 (802)
T ss_pred cCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHh-hHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHH
Confidence 5678888888887632 13444455666666665 4899999999999999998774 333 677888887
Q ss_pred HHHHhcCCCchhHH----H-HHhcC-------ChHHHHHHhccc---hhHhHHHHHHHHHHHhhhCCCCCchhhhhchHH
Q 014945 180 ALGNVAGDSPKCRD----L-VLSNG-------ALMPLLAQFNEH---AKLSMLRNATWTLSNFCRGKPQPLFEQTRPALP 244 (415)
Q Consensus 180 ~L~nl~~~~~~~~~----~-~~~~g-------~i~~L~~~l~~~---~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~ 244 (415)
++..+..+.....- . ....| .+..+++.+... .++.+....+.+|-+|+.+....-...+..+-|
T Consensus 194 IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~F~p 273 (802)
T PF13764_consen 194 IIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEHFKP 273 (802)
T ss_pred HHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHH
Confidence 77776543221000 0 01111 255666666422 367889999999999998854332222233333
Q ss_pred HHHHhh--c---CCChhHHHHHHHHHHHhccC----C--hHHHHHHHHcCcHHHHHHhcCCC--------Chh-------
Q 014945 245 ALERLI--H---SNDDEVLTDACWALSYLSDG----T--NDKIQAVIEAGVCPRLVELLRHP--------SPS------- 298 (415)
Q Consensus 245 ~l~~lL--~---~~d~~v~~~a~~~l~~l~~~----~--~~~~~~~~~~~~i~~L~~lL~~~--------~~~------- 298 (415)
.+ ++= . ..+..+. +.+++.++.+ . ....+.+++.|++...+..|... ++.
T Consensus 274 ~l-~f~~~D~~~~~~~~~~---Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~ 349 (802)
T PF13764_consen 274 YL-DFDKFDEEHSPDEQFK---LECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSR 349 (802)
T ss_pred hc-ChhhcccccCchHHHH---HHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcC
Confidence 22 111 1 1112222 4444444432 1 24567788899999888887421 111
Q ss_pred -hHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhc
Q 014945 299 -VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 355 (415)
Q Consensus 299 -v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~ 355 (415)
-...++..|.-++.+.. ..+..+..++++.+..+=+.+.+..+=.-|=.+|-.+..
T Consensus 350 psLp~iL~lL~GLa~gh~-~tQ~~~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~ 406 (802)
T PF13764_consen 350 PSLPYILRLLRGLARGHE-PTQLLIAEQLLPLLHRLEQVSSEEHIGSLAENLLEALAE 406 (802)
T ss_pred CcHHHHHHHHHHHHhcCH-HHHHHHHhhHHHHHHHhhcCCCccchHHHHHHHHHHHhc
Confidence 23557788888888765 355567777886655555444233333333344444443
No 212
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=95.81 E-value=0.36 Score=47.19 Aligned_cols=190 Identities=11% Similarity=0.057 Sum_probs=130.7
Q ss_pred HhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHH
Q 014945 196 LSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDK 275 (415)
Q Consensus 196 ~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~ 275 (415)
++.++++.+++++ ...+..++-..+.-+-.+... -........++|.+...+.+.++.+++.++.++..++..-..+
T Consensus 327 yq~~i~p~l~kLF-~~~Dr~iR~~LL~~i~~~i~~--Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~ 403 (690)
T KOG1243|consen 327 YQVRIIPVLLKLF-KSPDRQIRLLLLQYIEKYIDH--LTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR 403 (690)
T ss_pred cccchhhhHHHHh-cCcchHHHHHHHHhHHHHhhh--cCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh
Confidence 4667889999999 777888877666655555543 2333455788999999999999999999999998887543322
Q ss_pred HHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhc
Q 014945 276 IQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 355 (415)
Q Consensus 276 ~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~ 355 (415)
.+....+..+..+=.+++..++.....|+|.++....... .+.-+...+..-+.++ -..-|+.+.+++..-..
T Consensus 404 ---~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~---R~~vL~~aftralkdp-f~paR~a~v~~l~at~~ 476 (690)
T KOG1243|consen 404 ---NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASV---RKRVLASAFTRALKDP-FVPARKAGVLALAATQE 476 (690)
T ss_pred ---hhcHHHHHHHHhhCccccCcccccceeeecccccccchhh---hccccchhhhhhhcCC-CCCchhhhhHHHhhccc
Confidence 2233344555555556677899999999999987643222 2222334455567777 67778888888876655
Q ss_pred CCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhCC
Q 014945 356 GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSG 398 (415)
Q Consensus 356 ~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~ 398 (415)
..+ ..=+...++|.++-+.-+++..++..|-.++..+...
T Consensus 477 ~~~---~~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~k 516 (690)
T KOG1243|consen 477 YFD---QSEVANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEK 516 (690)
T ss_pred ccc---hhhhhhhccccccccccCcccchhhHHHHHHHHHHhh
Confidence 211 1123445788888888888888888888887766543
No 213
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=95.79 E-value=0.093 Score=35.69 Aligned_cols=62 Identities=23% Similarity=0.309 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhcc-CCHHHHHHHHHHHHHHhCCCCHHHHHHH
Q 014945 343 KKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN-AEFEIKKEAAWAISNATSGGSNEQIKYK 407 (415)
Q Consensus 343 ~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~-~~~~v~~~a~~aL~nl~~~~~~~~~~~l 407 (415)
.+.|.|+++++++. +.-+..+.+.++++.++++... +...+|-.|.++|+-++.. .+-.+.|
T Consensus 4 lKaaLWaighIgss-~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T--~~G~~~L 66 (73)
T PF14668_consen 4 LKAALWAIGHIGSS-PLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISST--EEGAEIL 66 (73)
T ss_pred HHHHHHHHHhHhcC-hHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCC--HHHHHHH
Confidence 57899999999884 5556667778999999999885 5578999999999999854 4444444
No 214
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=95.78 E-value=1.1 Score=38.83 Aligned_cols=203 Identities=17% Similarity=0.198 Sum_probs=117.0
Q ss_pred hHHHHH-hhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchh
Q 014945 159 VPIFVR-LLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFE 237 (415)
Q Consensus 159 i~~L~~-ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~ 237 (415)
++.|+. +-+..+++++...+.+|..++.....+... ++..+..+. ..+.......+...+..+-...+ ..+
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~-----v~~~L~~L~-~~~~~~~~~~~~rLl~~lw~~~~-r~f- 73 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPP-----VLQTLVSLV-EQGSLELRYVALRLLTLLWKAND-RHF- 73 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhH-----HHHHHHHHH-cCCchhHHHHHHHHHHHHHHhCc-hHH-
Confidence 344444 444578899999999999999776212222 233444444 44444444445555555554421 112
Q ss_pred hhhchHHHHHHh--------hc--CCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhc-CCCChhhHHHHHHH
Q 014945 238 QTRPALPALERL--------IH--SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-RHPSPSVLIPALRT 306 (415)
Q Consensus 238 ~~~~~l~~l~~l--------L~--~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL-~~~~~~v~~~a~~~ 306 (415)
+.+..++.. .. +...+.......++..+|...++. ...+++.+..+| .+.++.++..++.+
T Consensus 74 ---~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~-----g~~ll~~ls~~L~~~~~~~~~alale~ 145 (234)
T PF12530_consen 74 ---PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDH-----GVDLLPLLSGCLNQSCDEVAQALALEA 145 (234)
T ss_pred ---HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhh-----HHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 222222222 11 123445556567888888776652 224578888888 78888899999999
Q ss_pred HHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcC--CHHHHHHHHHcCCHHHHHHHhccCCHH
Q 014945 307 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG--NVNQIQAIIEAGIIGPLVNLLLNAEFE 383 (415)
Q Consensus 307 l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~--~~~~~~~l~~~~~i~~L~~~l~~~~~~ 383 (415)
|..++...-.... .....+.+-+..++.+.+.+..|..+..+..+ +.+.- ......++..+.++..+.+.+
T Consensus 146 l~~Lc~~~vvd~~-----s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~-~~~~~~~l~~lW~~~~~~~~~ 218 (234)
T PF12530_consen 146 LAPLCEAEVVDFY-----SAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEY-EELKRQILQLLWEYTSSSDVN 218 (234)
T ss_pred HHHHHHHhhccHH-----HHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhh-hHHHHHHHHHHHhhccccccc
Confidence 9999943221111 23345555555555777777666666655553 22322 334455788888887776643
No 215
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=95.74 E-value=0.6 Score=43.31 Aligned_cols=276 Identities=18% Similarity=0.159 Sum_probs=140.3
Q ss_pred hHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCC-CCHHHHHHHHHH-HHHhcCCCchhHH
Q 014945 116 VPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWA-LGNVAGDSPKCRD 193 (415)
Q Consensus 116 i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~v~~~a~~~-L~nl~~~~~~~~~ 193 (415)
+..++.=+.+.+...+|..++--|+.-+.+ ++++..+..+|....+++.+.. ++..+...++.+ +.-++.+.. .-.
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~~-~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~-~~~ 100 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCAD-PQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGL-NMH 100 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhCC-HHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCc-chh
Confidence 455666666444478898888888888774 9999999999999999999854 444344444444 444444443 334
Q ss_pred HHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhc---------CCChhHHHHHHHH
Q 014945 194 LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH---------SNDDEVLTDACWA 264 (415)
Q Consensus 194 ~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~---------~~d~~v~~~a~~~ 264 (415)
.+...+....++.++.-....+...... ... ...-..........+.+.+. +....-+..++.+
T Consensus 101 l~~~~~~~~ll~~Ll~~~~~~~~~~~~~------~~~-~~~lsk~~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~ 173 (361)
T PF07814_consen 101 LLLDRDSLRLLLKLLKVDKSLDVPSDSD------SSR-KKNLSKVQQKSRSLCKELLSSGSSWKSPKPPELSPQTLALLA 173 (361)
T ss_pred hhhchhHHHHHHHHhccccccccccchh------hhh-hhhhhHHHHHHHHHHHHHHhccccccccCCcccccccHHHHH
Confidence 4444445555566663000000000000 000 00000000111111111110 0111122233333
Q ss_pred HHHhc--------------cCChHHHHHHHHcCcHHHHHHhcCC----C-------C-----hhhHHHHHHHHHHhhcCC
Q 014945 265 LSYLS--------------DGTNDKIQAVIEAGVCPRLVELLRH----P-------S-----PSVLIPALRTVGNIVTGD 314 (415)
Q Consensus 265 l~~l~--------------~~~~~~~~~~~~~~~i~~L~~lL~~----~-------~-----~~v~~~a~~~l~nl~~~~ 314 (415)
+-.++ ...+...+.+...|+++.++..+.. . . -.....++++|-+.+..+
T Consensus 174 le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~ 253 (361)
T PF07814_consen 174 LESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLS 253 (361)
T ss_pred HHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcC
Confidence 33331 1111223445566788888888741 1 1 124456888888888766
Q ss_pred hHHHHHHHHC--CChHHHHHH-hcCC--CccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHH------h-c----
Q 014945 315 DMQTQCIINH--QALPCLLDL-LTQN--YKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNL------L-L---- 378 (415)
Q Consensus 315 ~~~~~~~~~~--~~l~~L~~l-l~~~--~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~------l-~---- 378 (415)
+.....++.. +.++.+... +... ....+...++..+.|++.++++....+...++...+..+ + .
T Consensus 254 ~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l~~~~~~i~~~~~~~~~~~~~ 333 (361)
T PF07814_consen 254 EENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKLGQQLGLIVTSFFCVLSLPNY 333 (361)
T ss_pred ccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHhccchHHHHHhhccccccccc
Confidence 6554445443 333333332 2222 033445678888999999887766666544332221111 1 1
Q ss_pred ---cCCHHHHHHHHHHHHHHhCCCC
Q 014945 379 ---NAEFEIKKEAAWAISNATSGGS 400 (415)
Q Consensus 379 ---~~~~~v~~~a~~aL~nl~~~~~ 400 (415)
....+...-++.+|.|+++..+
T Consensus 334 ~~~~~~~D~~IL~Lg~LINL~E~s~ 358 (361)
T PF07814_consen 334 VPEESSFDILILALGLLINLVEHSE 358 (361)
T ss_pred ccccccchHHHHHHHhHHHheeeCc
Confidence 1235677889999999998754
No 216
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=95.72 E-value=1.1 Score=38.11 Aligned_cols=176 Identities=14% Similarity=0.111 Sum_probs=109.4
Q ss_pred HHHHHHHHHhhhCCCCCchhhhhchHH-HHHHhhcC-----CChhHHHHHHHHHHHhccCC-hHHHHHHHHcCcHHHHHH
Q 014945 218 RNATWTLSNFCRGKPQPLFEQTRPALP-ALERLIHS-----NDDEVLTDACWALSYLSDGT-NDKIQAVIEAGVCPRLVE 290 (415)
Q Consensus 218 ~~a~~~l~~l~~~~~~~~~~~~~~~l~-~l~~lL~~-----~d~~v~~~a~~~l~~l~~~~-~~~~~~~~~~~~i~~L~~ 290 (415)
.+++..+--++.+ |.....+...-+| .+..+|.. +.+-.|-.+++.|+.+...+ ++.+..+..++++|..+.
T Consensus 97 cnaL~LlQcvASH-pdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLr 175 (293)
T KOG3036|consen 97 CNALALLQCVASH-PDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLR 175 (293)
T ss_pred HHHHHHHHHHhcC-cchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHH
Confidence 4444444444444 5555555555455 34455543 35779999999999998654 466778888999999999
Q ss_pred hcCCCChhhHHHHHHHHHHhhcCChHHHHHHH---H-----CCChH-HHHHHhcCCCccchHHHHHHHHHHHhcCCHHHH
Q 014945 291 LLRHPSPSVLIPALRTVGNIVTGDDMQTQCII---N-----HQALP-CLLDLLTQNYKKSIKKEACWTISNITAGNVNQI 361 (415)
Q Consensus 291 lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~---~-----~~~l~-~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~ 361 (415)
.+..+++--+.-|..+++.|...+. ...++- + ...+. .+..+.+.+ ++++-+.+..+..+++.+ +..+
T Consensus 176 ime~GSelSKtvA~fIlqKIlldD~-GL~YiCqt~eRF~av~~~L~kmv~~l~~~p-s~RllKhviRcYlrLsdn-prar 252 (293)
T KOG3036|consen 176 IMESGSELSKTVATFILQKILLDDV-GLYYICQTAERFSAVALVLGKMVFQLVSMP-SPRLLKHVIRCYLRLSDN-PRAR 252 (293)
T ss_pred HHhcccHHHHHHHHHHHHHHhhccc-cHHHHHHhHHHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHhcCC-HHHH
Confidence 9999999889999999999887543 111111 0 11233 334454555 889999999999999874 5544
Q ss_pred HHHHH---cCCHHHHHHHhccCCHHHHHHHHHHHHHHhC
Q 014945 362 QAIIE---AGIIGPLVNLLLNAEFEIKKEAAWAISNATS 397 (415)
Q Consensus 362 ~~l~~---~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~ 397 (415)
..+.. .++-..-...+-.+|+..+.--...+.|+..
T Consensus 253 ~aL~~clPd~Lrd~tfs~~l~~D~~~k~~l~~ll~~l~~ 291 (293)
T KOG3036|consen 253 AALRSCLPDQLRDGTFSLLLKDDPETKQWLQQLLKNLCT 291 (293)
T ss_pred HHHHhhCcchhccchHHHHHhcChhHHHHHHHHHHHhcc
Confidence 43322 2222222222223455555544445555543
No 217
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=95.71 E-value=0.51 Score=48.05 Aligned_cols=185 Identities=15% Similarity=0.126 Sum_probs=126.5
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHH
Q 014945 75 AMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVI 154 (415)
Q Consensus 75 ~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~ 154 (415)
.+-..+.+.++..+..|+..+...++... ........|.+-.++.....+.+..+...|+.+|..|+.........+.
T Consensus 257 ~l~t~~~s~~WK~R~Eale~l~~~l~e~~--~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~ 334 (815)
T KOG1820|consen 257 NLETEMLSKKWKDRKEALEELVAILEEAK--KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYA 334 (815)
T ss_pred HHHHhhhccchHHHHHHHHHHHHHHhccc--cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHH
Confidence 34455668899999999999999876542 1111223445555555554443478899999999999986544432222
Q ss_pred hCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCC--
Q 014945 155 DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP-- 232 (415)
Q Consensus 155 ~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~-- 232 (415)
.+.+|.++..+......+++.+..++-.++...+. ....+.+...+ .+.++.+...+...+........
T Consensus 335 -~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l-------~~~~~~I~e~l-k~knp~~k~~~~~~l~r~~~~~~~~ 405 (815)
T KOG1820|consen 335 -KNVFPSLLDRLKEKKSELRDALLKALDAILNSTPL-------SKMSEAILEAL-KGKNPQIKGECLLLLDRKLRKLGPK 405 (815)
T ss_pred -HhhcchHHHHhhhccHHHHHHHHHHHHHHHhcccH-------HHHHHHHHHHh-cCCChhhHHHHHHHHHHHHhhcCCc
Confidence 26788899988888888888887777666653221 11345666677 77888888776666555554432
Q ss_pred CCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhcc
Q 014945 233 QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSD 270 (415)
Q Consensus 233 ~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~ 270 (415)
.........++|.++....+.+.+||..+..+++-+..
T Consensus 406 ~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k 443 (815)
T KOG1820|consen 406 TVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMK 443 (815)
T ss_pred CcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHH
Confidence 23344557889999999999999999999998887653
No 218
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=95.70 E-value=1.3 Score=38.87 Aligned_cols=219 Identities=15% Similarity=0.168 Sum_probs=125.3
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhcCCCchhHHHH
Q 014945 118 RFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS--PTDDVREQAVWALGNVAGDSPKCRDLV 195 (415)
Q Consensus 118 ~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~--~~~~v~~~a~~~L~nl~~~~~~~~~~~ 195 (415)
.|-..|.+++ +.+|..|+.+|+.+...-+... ....-+..|+.++.+ .|......++.++..+.....-.....
T Consensus 3 ~Lg~~Ltsed-~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~~ 78 (262)
T PF14500_consen 3 SLGEYLTSED-PIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPESA 78 (262)
T ss_pred chhhhhCCCC-HHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhhH
Confidence 3556778887 8999999999998877544221 222235555555433 345455555777766663322111111
Q ss_pred HhcCChHHHHHHhc-cchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCC-ChhHHHHHHHHHHHhccCCh
Q 014945 196 LSNGALMPLLAQFN-EHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSN-DDEVLTDACWALSYLSDGTN 273 (415)
Q Consensus 196 ~~~g~i~~L~~~l~-~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~-d~~v~~~a~~~l~~l~~~~~ 273 (415)
. ..+..+.+... +......+..+...+..+..............++..+++.+..+ ||.-..-+...+..+...-+
T Consensus 79 ~--~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~ 156 (262)
T PF14500_consen 79 V--KILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD 156 (262)
T ss_pred H--HHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc
Confidence 1 12333333221 12244567777777777776642222222345677777777654 88877777777776654332
Q ss_pred HHHHHHHHcCcHHHHHHhcC--------C-C-Ch--hhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccc
Q 014945 274 DKIQAVIEAGVCPRLVELLR--------H-P-SP--SVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKS 341 (415)
Q Consensus 274 ~~~~~~~~~~~i~~L~~lL~--------~-~-~~--~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~ 341 (415)
- ....+.+.+.+. . + ++ -.+..--..|.+....++... .-.+|.|++-|.++ .+.
T Consensus 157 ~-------~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa-----~~~~p~LleKL~s~-~~~ 223 (262)
T PF14500_consen 157 I-------SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFA-----PFAFPLLLEKLDST-SPS 223 (262)
T ss_pred c-------chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhH-----HHHHHHHHHHHcCC-CcH
Confidence 1 122333333332 1 1 21 233334445555555555333 35689999999999 999
Q ss_pred hHHHHHHHHHHHhc
Q 014945 342 IKKEACWTISNITA 355 (415)
Q Consensus 342 v~~~a~~~l~nl~~ 355 (415)
+|..+..+|..++.
T Consensus 224 ~K~D~L~tL~~c~~ 237 (262)
T PF14500_consen 224 VKLDSLQTLKACIE 237 (262)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998886
No 219
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=95.48 E-value=1.7 Score=38.50 Aligned_cols=203 Identities=12% Similarity=0.084 Sum_probs=138.8
Q ss_pred HHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchh---hh---hchHHHHHHhhcCCChhHHHHHHHHHH
Q 014945 193 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFE---QT---RPALPALERLIHSNDDEVLTDACWALS 266 (415)
Q Consensus 193 ~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~---~~---~~~l~~l~~lL~~~d~~v~~~a~~~l~ 266 (415)
..+...|.+..++..+ ...+.+.+..++.+..++.+...+.... .. ...++.++..-.. .+++.-.+-..+.
T Consensus 73 qef~~~~~l~~lI~~l-~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~-~~~iaL~cg~mlr 150 (342)
T KOG1566|consen 73 QEFYNADVLSLLIQHL-PKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN-TPEIALTCGNMLR 150 (342)
T ss_pred HHHHhCCchHHHHHhh-hcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc-chHHHHHHHHHHH
Confidence 4566788889999998 7778888999999999998776332222 11 3344444444111 2444333333333
Q ss_pred HhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCC----hHHHHHHhcCCCccch
Q 014945 267 YLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQA----LPCLLDLLTQNYKKSI 342 (415)
Q Consensus 267 ~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~----l~~L~~ll~~~~~~~v 342 (415)
.... .+.....+..+.-+.....+...+.-++...|..+...+.+........++..+. .++--.++.++ +.-+
T Consensus 151 Ecir-he~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~-Nyvt 228 (342)
T KOG1566|consen 151 ECIR-HEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSE-NYVT 228 (342)
T ss_pred HHHh-hHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhccc-ceeh
Confidence 3222 2333345666666777777777788789999999999988877766666665433 34466677888 9999
Q ss_pred HHHHHHHHHHHhcC--CHHHHHHHH-HcCCHHHHHHHhccCCHHHHHHHHHHHHHHhCCC
Q 014945 343 KKEACWTISNITAG--NVNQIQAII-EAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG 399 (415)
Q Consensus 343 ~~~a~~~l~nl~~~--~~~~~~~l~-~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~~ 399 (415)
+..+...++.+..+ +.......+ +..-+..++.+|.++...+|.+|-....-+....
T Consensus 229 krqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnp 288 (342)
T KOG1566|consen 229 KRQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANP 288 (342)
T ss_pred HHHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCC
Confidence 99999999988863 444444444 3456889999999999999999999888877654
No 220
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=95.44 E-value=0.15 Score=48.36 Aligned_cols=128 Identities=27% Similarity=0.347 Sum_probs=92.5
Q ss_pred HhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHh-hCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcC
Q 014945 121 EFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRL-LSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNG 199 (415)
Q Consensus 121 ~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~l-l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g 199 (415)
+++.+.+ +-+|...+..++.--.++. +.|++..++.. .++.++.+++.|+.+|+-+|.+++.
T Consensus 523 ell~d~d-s~lRy~G~fs~alAy~GTg-------n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~--------- 585 (926)
T COG5116 523 ELLYDKD-SILRYNGVFSLALAYVGTG-------NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD--------- 585 (926)
T ss_pred HHhcCch-HHhhhccHHHHHHHHhcCC-------cchhHhhhheeecccCchHHHHHHHHheeeeEecCcc---------
Confidence 3444444 6666666555543222211 23677788887 6678899999999999999987764
Q ss_pred ChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccC
Q 014945 200 ALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDG 271 (415)
Q Consensus 200 ~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~ 271 (415)
.+...+++|..+.+..++.-.+.+|.-.|.+.. ...++..|-.++.+.+.-|+..|+-+++-+...
T Consensus 586 ~lv~tvelLs~shN~hVR~g~AvaLGiacag~G------~~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q 651 (926)
T COG5116 586 LLVGTVELLSESHNFHVRAGVAVALGIACAGTG------DKVATDILEALMYDTNDFVRQSAMIAVGMILMQ 651 (926)
T ss_pred hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCc------cHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhh
Confidence 456778888778899999999999998887742 133456677778888889999999999887643
No 221
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=95.28 E-value=0.72 Score=37.88 Aligned_cols=141 Identities=17% Similarity=0.140 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHhCC-Cch----hhHHHHhC------CChHHHHH-hhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhc
Q 014945 131 LQFEAAWALTNIASG-TSE----NTRVVIDH------GAVPIFVR-LLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSN 198 (415)
Q Consensus 131 i~~~a~~~L~~l~~~-~~~----~~~~~~~~------g~i~~L~~-ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~ 198 (415)
+|..|+.+|..++.. ++. +...++-. +.-+.|+. ++.++++.+|..|+.++..+..++..+-...-+.
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~ 81 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES 81 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence 566777777777664 111 11122211 23334444 6678899999999999999876653322221111
Q ss_pred C-------------------ChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCC--CchhhhhchHHHHHHhhcCCChhH
Q 014945 199 G-------------------ALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQ--PLFEQTRPALPALERLIHSNDDEV 257 (415)
Q Consensus 199 g-------------------~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~--~~~~~~~~~l~~l~~lL~~~d~~v 257 (415)
+ ....|+..|....+..+...++.++..+...-|- .+......++..+..++.+.|.++
T Consensus 82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v 161 (182)
T PF13251_consen 82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNV 161 (182)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcH
Confidence 1 2334556665566788888999999999877633 233445667777778888999999
Q ss_pred HHHHHHHHHHhccC
Q 014945 258 LTDACWALSYLSDG 271 (415)
Q Consensus 258 ~~~a~~~l~~l~~~ 271 (415)
+..++.+++-+...
T Consensus 162 ~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 162 RVAALSCLGALLSV 175 (182)
T ss_pred HHHHHHHHHHHHcC
Confidence 99999999887644
No 222
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=95.27 E-value=2.3 Score=39.93 Aligned_cols=190 Identities=13% Similarity=0.058 Sum_probs=113.0
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCc--hhHHHhcCchHHHHHhhcCCC----Ch--HHHHHHHHHHHHHhCC
Q 014945 74 PAMVAGVWSDDRNIQLDATTQFRKLLSIERSPP--INEVIQSGVVPRFIEFLSRDD----FP--QLQFEAAWALTNIASG 145 (415)
Q Consensus 74 ~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~--~~~~~~~g~i~~L~~ll~~~~----~~--~i~~~a~~~L~~l~~~ 145 (415)
..+..+++..+.+.++.|+....++....+... .+.+.+.-+++.+-+++.+.+ .+ -.+..++.+|.-.+.+
T Consensus 14 ~~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~ 93 (698)
T KOG2611|consen 14 DDCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRV 93 (698)
T ss_pred hhHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCC
Confidence 445666677777788889988888876553222 234667777888888887643 12 3345566677777764
Q ss_pred Cchhh--HHHHhCCChHHHHHhhCC-CC------HHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccch-hHh
Q 014945 146 TSENT--RVVIDHGAVPIFVRLLSS-PT------DDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA-KLS 215 (415)
Q Consensus 146 ~~~~~--~~~~~~g~i~~L~~ll~~-~~------~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~-~~~ 215 (415)
++.. ..++ +.||.|..++.. .+ -.+.+.+..+|..+++..+. ...++..|+++.+.++-.-.. ..+
T Consensus 94 -pElAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G-~~~Lia~G~~~~~~Q~y~~~~~~~d 169 (698)
T KOG2611|consen 94 -PELASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAG-LMTLIASGGLRVIAQMYELPDGSHD 169 (698)
T ss_pred -hhhccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCch-hHHHHhcCchHHHHHHHhCCCCchh
Confidence 4322 2333 468999998865 12 33788999999999988664 566778899999997753211 111
Q ss_pred HHHHHHHHHHHhhhC-C-CCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHh
Q 014945 216 MLRNATWTLSNFCRG-K-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYL 268 (415)
Q Consensus 216 ~~~~a~~~l~~l~~~-~-~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l 268 (415)
. .-++.++.-+... . -.........++..+..-+...+.......|..+..+
T Consensus 170 ~-alal~Vlll~~~~~~cw~e~~~~flali~~va~df~~~~~a~KfElc~lL~~v 223 (698)
T KOG2611|consen 170 M-ALALKVLLLLVSKLDCWSETIERFLALIAAVARDFAVLHNALKFELCHLLSAV 223 (698)
T ss_pred H-HHHHHHHHHHHHhcccCcCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 1 1111111111111 1 1112222233344555445555666777788887744
No 223
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=95.16 E-value=0.28 Score=40.72 Aligned_cols=124 Identities=15% Similarity=0.108 Sum_probs=84.0
Q ss_pred cCCChhHHHHHHHHHHHhccCChHHHHHHHH----------------cCcHHHHHHhcCC------CChhhHHHHHHHHH
Q 014945 251 HSNDDEVLTDACWALSYLSDGTNDKIQAVIE----------------AGVCPRLVELLRH------PSPSVLIPALRTVG 308 (415)
Q Consensus 251 ~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~----------------~~~i~~L~~lL~~------~~~~v~~~a~~~l~ 308 (415)
.+++......++..|+|++..+..... +++ ...+..|+..+.. ....-......++.
T Consensus 5 ~~~~~~~adl~~MLLsNlT~~~~~~~~-ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~ 83 (192)
T PF04063_consen 5 TDPKSPLADLACMLLSNLTRSDSGCEK-LLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLA 83 (192)
T ss_pred cCCCcchHHHHHHHHHHhccchHHHHH-HHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHH
Confidence 344555666778888888876554321 222 2356667777644 23445667888999
Q ss_pred HhhcCChHHHHHHHHC--CC--hHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHH---cCCHHHHHHHhc
Q 014945 309 NIVTGDDMQTQCIINH--QA--LPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE---AGIIGPLVNLLL 378 (415)
Q Consensus 309 nl~~~~~~~~~~~~~~--~~--l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~---~~~i~~L~~~l~ 378 (415)
|++... ..++.+++. +. +..|+.++.+. +..-|..++.+|.|+|-....+ ..++. -+++|.|+--+.
T Consensus 84 NlS~~~-~gR~~~l~~~~~~~~l~kLl~ft~~~-s~iRR~Gva~~IrNccFd~~~H-~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 84 NLSQLP-EGRQFFLDPQRYDGPLQKLLPFTEHK-SVIRRGGVAGTIRNCCFDTDSH-EWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred HhcCCH-HHHHHHhCchhhhhHHHHHHHHhccC-cHHHHHHHHHHHHHhhccHhHH-HHhcCchhhhhHHHHHhhcc
Confidence 999854 467777755 34 77888888888 8888889999999999865554 44443 367887776665
No 224
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.03 E-value=1.4 Score=41.39 Aligned_cols=143 Identities=18% Similarity=0.158 Sum_probs=89.7
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCch-hHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCc-hhhhhchHH
Q 014945 167 SSPTDDVREQAVWALGNVAGDSPK-CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPL-FEQTRPALP 244 (415)
Q Consensus 167 ~~~~~~v~~~a~~~L~nl~~~~~~-~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~-~~~~~~~l~ 244 (415)
.+++..++..|+.+|+|.+...|. ++.. ..-.+..++.-|.++.+.+++-.++.+|.-+........ .....++.-
T Consensus 268 ~dp~a~~r~~a~r~L~~~as~~P~kv~th--~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ial 345 (533)
T KOG2032|consen 268 TDPSAKSRGMACRGLGNTASGAPDKVRTH--KTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIAL 345 (533)
T ss_pred cCchhHHHHHHHHHHHHHhccCcHHHHHh--HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHH
Confidence 347889999999999999988553 2222 222566677777566788899999888888876542222 222234444
Q ss_pred HHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHc---CcHHHHHHhcCCCChhhHHHHHHHHHHhhc
Q 014945 245 ALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA---GVCPRLVELLRHPSPSVLIPALRTVGNIVT 312 (415)
Q Consensus 245 ~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~---~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~ 312 (415)
.+-.++.+.+++.+.++..+++.|+.......+.+..+ +-..+++-.|.++++.+. .||+..-..+.
T Consensus 346 rlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va-~ACr~~~~~c~ 415 (533)
T KOG2032|consen 346 RLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVA-RACRSELRTCY 415 (533)
T ss_pred HHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHH-HHHHHHHHhcC
Confidence 56677888999999999998888864332221222221 223344445566666543 45555555543
No 225
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=94.74 E-value=0.16 Score=36.54 Aligned_cols=84 Identities=13% Similarity=0.178 Sum_probs=64.6
Q ss_pred HHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHH
Q 014945 285 CPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAI 364 (415)
Q Consensus 285 i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l 364 (415)
++..+..+.++.+.+|..++..|+.+..... ....-..+++..+...++++ ++.|--.|...++.++...++.
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~-DsyVYL~aI~~L~~La~~~p~~---- 77 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDE-DSYVYLNAIKGLAALADRHPDE---- 77 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCC-CchHHHHHHHHHHHHHHHChHH----
Confidence 4567777888999999999999999998766 11122236788888999999 9999999999999999865552
Q ss_pred HHcCCHHHHHHHhcc
Q 014945 365 IEAGIIGPLVNLLLN 379 (415)
Q Consensus 365 ~~~~~i~~L~~~l~~ 379 (415)
+++.|++...+
T Consensus 78 ----vl~~L~~~y~~ 88 (92)
T PF10363_consen 78 ----VLPILLDEYAD 88 (92)
T ss_pred ----HHHHHHHHHhC
Confidence 45566655543
No 226
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=94.70 E-value=1.2 Score=44.46 Aligned_cols=135 Identities=19% Similarity=0.181 Sum_probs=82.3
Q ss_pred chHHHHHHhhcCC----ChhHHHHHHHHHHHhcc----CChHHHHHHHHcCcHHHHHHhc----CCCChhhHHHHHHHHH
Q 014945 241 PALPALERLIHSN----DDEVLTDACWALSYLSD----GTNDKIQAVIEAGVCPRLVELL----RHPSPSVLIPALRTVG 308 (415)
Q Consensus 241 ~~l~~l~~lL~~~----d~~v~~~a~~~l~~l~~----~~~~~~~~~~~~~~i~~L~~lL----~~~~~~v~~~a~~~l~ 308 (415)
..+..+..+++++ .+.++..++-+++.+.. ..+..-. .+-..+++.+...| ...+...+..++.+||
T Consensus 393 ~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLG 471 (574)
T smart00638 393 EILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPD-FVLEELLKYLHELLQQAVSKGDEEEIQLYLKALG 471 (574)
T ss_pred HHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCCh-hhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhh
Confidence 4455666666543 45677777777776653 2211101 11123455555554 3445566788999999
Q ss_pred HhhcCChHHHHHHHHCCChHHHHHHhc-CC-CccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhcc--CCHHH
Q 014945 309 NIVTGDDMQTQCIINHQALPCLLDLLT-QN-YKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN--AEFEI 384 (415)
Q Consensus 309 nl~~~~~~~~~~~~~~~~l~~L~~ll~-~~-~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~--~~~~v 384 (415)
|+.... .++.+..++. .. .+..+|..|+|+|..++...+..+ -+.++.++.+ .++++
T Consensus 472 N~g~~~-----------~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v--------~~~l~~i~~n~~e~~Ev 532 (574)
T smart00638 472 NAGHPS-----------SIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKV--------QEVLLPIYLNRAEPPEV 532 (574)
T ss_pred ccCChh-----------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHH--------HHHHHHHHcCCCCChHH
Confidence 997632 2345555554 21 245799999999999986555533 3455566654 66889
Q ss_pred HHHHHHHHHHH
Q 014945 385 KKEAAWAISNA 395 (415)
Q Consensus 385 ~~~a~~aL~nl 395 (415)
|..|..+|...
T Consensus 533 RiaA~~~lm~t 543 (574)
T smart00638 533 RMAAVLVLMET 543 (574)
T ss_pred HHHHHHHHHhc
Confidence 99888887665
No 227
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.68 E-value=0.3 Score=47.70 Aligned_cols=109 Identities=20% Similarity=0.223 Sum_probs=81.2
Q ss_pred hhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChH
Q 014945 237 EQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM 316 (415)
Q Consensus 237 ~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~ 316 (415)
..+.+.+..++....++|..|+..+|..|..+...... +...+-.++...+..-+.+..+.||..|+.+|+.+-..+.+
T Consensus 81 DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~e-idd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~d 159 (892)
T KOG2025|consen 81 DLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAE-IDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKD 159 (892)
T ss_pred hHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccc-cCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCC
Confidence 36678888888888999999999999999999874332 22233345677788888899999999999999998743221
Q ss_pred HHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHH
Q 014945 317 QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTIS 351 (415)
Q Consensus 317 ~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~ 351 (415)
. +..+...+..++++.++++||..|...+.
T Consensus 160 e-----e~~v~n~l~~liqnDpS~EVRRaaLsnI~ 189 (892)
T KOG2025|consen 160 E-----ECPVVNLLKDLIQNDPSDEVRRAALSNIS 189 (892)
T ss_pred C-----cccHHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence 1 12456678888877768999998766554
No 228
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=94.63 E-value=0.16 Score=36.55 Aligned_cols=78 Identities=10% Similarity=0.069 Sum_probs=62.6
Q ss_pred hHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCHHHHHH
Q 014945 327 LPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKY 406 (415)
Q Consensus 327 l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~ 406 (415)
+...+..+.++ .+.+|..+...|..+..... ....-..+++..+...++++|+-|=..|+.+|+.++...+...+..
T Consensus 5 ~~~al~~L~dp-~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~vl~~ 81 (92)
T PF10363_consen 5 LQEALSDLNDP-LPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEVLPI 81 (92)
T ss_pred HHHHHHHccCC-CcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHHHHH
Confidence 45567778888 89999999999999998533 1122224578888899999999999999999999999877777777
Q ss_pred H
Q 014945 407 K 407 (415)
Q Consensus 407 l 407 (415)
|
T Consensus 82 L 82 (92)
T PF10363_consen 82 L 82 (92)
T ss_pred H
Confidence 7
No 229
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.63 E-value=1.5 Score=43.14 Aligned_cols=187 Identities=14% Similarity=0.089 Sum_probs=118.2
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHhCC-Cc----hhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchh
Q 014945 117 PRFIEFLSRDDFPQLQFEAAWALTNIASG-TS----ENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 191 (415)
Q Consensus 117 ~~L~~ll~~~~~~~i~~~a~~~L~~l~~~-~~----~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~ 191 (415)
|.|-.-|+-.+ ..+|..|+..+.++--- +| +..+.+++. -...+-.+|+++-+.++..|+..+..+...-...
T Consensus 177 p~l~R~L~a~N-s~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~k-Qf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~ 254 (1005)
T KOG1949|consen 177 PILWRGLKARN-SEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQK-QFEELYSLLEDPYPMVRSTAILGVCKITSKFWEM 254 (1005)
T ss_pred HHHHHhhccCc-hhhhhhHHHHHHHhccCCCCCccHHHHHHHHHH-HHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHH
Confidence 44455666677 89999999999887641 12 334445543 3677888999999999999988887765321110
Q ss_pred --HHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhc
Q 014945 192 --RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLS 269 (415)
Q Consensus 192 --~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~ 269 (415)
...+.+ .+..++.-+..++..+++......|..+...+ ........++|.+-..|+++...|+.++...|..+-
T Consensus 255 iP~~i~~~--ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np--~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik 330 (1005)
T KOG1949|consen 255 IPPTILID--LLKKITDELAFDTSSDVRCSVFKGLPMILDNP--LSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIK 330 (1005)
T ss_pred cCHHHHHH--HHHHHHHHhhhccchheehhHhcCcHHHHcCc--cchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHH
Confidence 011111 33344444444556678888888888887653 233445677888888899999999999888887764
Q ss_pred cCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhc
Q 014945 270 DGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT 312 (415)
Q Consensus 270 ~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~ 312 (415)
.... -.+.+---++.++..|..++..+....+..|-+.+.
T Consensus 331 ~vra---~~f~~I~~~d~~l~~L~~d~~~v~rr~~~li~~s~l 370 (1005)
T KOG1949|consen 331 AVRA---AKFWKICPMDHILVRLETDSRPVSRRLVSLIFNSFL 370 (1005)
T ss_pred hhhh---hhhhccccHHHHHHHHhccccHHHHHHHHHHHHhhc
Confidence 3221 112222234566666766666666655555555543
No 230
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=94.54 E-value=4.8 Score=38.90 Aligned_cols=255 Identities=15% Similarity=0.105 Sum_probs=132.1
Q ss_pred HhhcCC-CHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCCh---HHHHHHHHHHHHHhCCCchhhHHH
Q 014945 78 AGVWSD-DRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFP---QLQFEAAWALTNIASGTSENTRVV 153 (415)
Q Consensus 78 ~~l~~~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~---~i~~~a~~~L~~l~~~~~~~~~~~ 153 (415)
.++..+ ..+.+..+...+..+...... .. .... ..+.+.+.....+ ..+..|+..| +.+..+. ..
T Consensus 35 DLi~~~~p~e~R~~~~~ll~~~i~~~~~-~~-~~~R----~~fF~~I~~~~~~~d~~~~l~aL~~L---T~~Grdi--~~ 103 (464)
T PF11864_consen 35 DLIDPNQPSEARRAALELLIACIKRQDS-SS-GLMR----AEFFRDISDPSNDDDFDLRLEALIAL---TDNGRDI--DF 103 (464)
T ss_pred hhcCCCCCHHHHHHHHHHHHHHHHcccc-cc-HHHH----HHHHHHHhcCCCchhHHHHHHHHHHH---HcCCcCc--hh
Confidence 344443 456788888888887765422 11 1111 1222333332213 4455555544 4443433 22
Q ss_pred HhCCChHHHHHhhCCC---------------------------CHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHH
Q 014945 154 IDHGAVPIFVRLLSSP---------------------------TDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLA 206 (415)
Q Consensus 154 ~~~g~i~~L~~ll~~~---------------------------~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ 206 (415)
.+.++.+.|...+..- +.......+..+.|+...+...-+.-.-.+.+..++.
T Consensus 104 ~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~ 183 (464)
T PF11864_consen 104 FEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVIKFNFNYLDEDEISSLVDQICT 183 (464)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Confidence 5567777777766310 2223344455555555433222121112234555555
Q ss_pred HhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHH
Q 014945 207 QFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCP 286 (415)
Q Consensus 207 ~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~ 286 (415)
+..+..+......++.++-.+..+. ..+......++..|...... .+....+-.++.||+...... ..+.
T Consensus 184 iC~~Ts~~~di~~~L~vldaii~y~-~iP~~sl~~~i~vLCsi~~~--~~l~~~~w~~m~nL~~S~~g~-------~~i~ 253 (464)
T PF11864_consen 184 ICKSTSSEDDIEACLSVLDAIITYG-DIPSESLSPCIEVLCSIVNS--VSLCKPSWRTMRNLLKSHLGH-------SAIR 253 (464)
T ss_pred HHhccCcHHHHHHHHHHHHHHHHcC-cCChHHHHHHHHHHhhHhcc--cccchhHHHHHHHHHcCccHH-------HHHH
Confidence 5444445555566666666665542 22222233344444333222 255566666777877544322 1356
Q ss_pred HHHHhcCC------CChhhHHHHHHHHHHhhcCChHHHHHHHHC---CChHHHHHHhcCCCccchHHHHHHHHHHHh
Q 014945 287 RLVELLRH------PSPSVLIPALRTVGNIVTGDDMQTQCIINH---QALPCLLDLLTQNYKKSIKKEACWTISNIT 354 (415)
Q Consensus 287 ~L~~lL~~------~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~---~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~ 354 (415)
.|..+|.+ .+..+..-|+..++.+..+.......-+.. -+++.+...++.+ ++.+-.+....+.++.
T Consensus 254 ~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~-~~~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 254 TLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSN-SPRVDYEILLLINRLL 329 (464)
T ss_pred HHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCC-CCeehHHHHHHHHHHH
Confidence 67777732 244567789999998887763222212222 2677788888877 7777777777777777
No 231
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.50 E-value=0.57 Score=41.24 Aligned_cols=147 Identities=17% Similarity=0.170 Sum_probs=104.9
Q ss_pred hchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHH
Q 014945 240 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQ 319 (415)
Q Consensus 240 ~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~ 319 (415)
...+...+..|.++|.+...+++..+..|+....+.....+. .++-.++.-+++....|...||.+++.+.+.-.....
T Consensus 87 ~~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~ 165 (334)
T KOG2933|consen 87 EAALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSID 165 (334)
T ss_pred HHHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677788889999999999999998776655444443 3567777778888888999999999999876554444
Q ss_pred HHHHCCChHHHHHHhcC-C--CccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHh
Q 014945 320 CIINHQALPCLLDLLTQ-N--YKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT 396 (415)
Q Consensus 320 ~~~~~~~l~~L~~ll~~-~--~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~ 396 (415)
. -++.++..|.+ . .+.-|+..|-.+|..+..+-..+. +++.|+..+.+..+.++..++.+..++.
T Consensus 166 ~-----~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~-------~L~~L~~~~~~~n~r~r~~a~~~~~~~v 233 (334)
T KOG2933|consen 166 Q-----ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQK-------LLRKLIPILQHSNPRVRAKAALCFSRCV 233 (334)
T ss_pred H-----HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChHH-------HHHHHHHHHhhhchhhhhhhhccccccc
Confidence 3 23344443322 2 134588888899988886422222 5778888888899999999998888887
Q ss_pred CCC
Q 014945 397 SGG 399 (415)
Q Consensus 397 ~~~ 399 (415)
...
T Consensus 234 ~rl 236 (334)
T KOG2933|consen 234 IRL 236 (334)
T ss_pred eec
Confidence 544
No 232
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=94.39 E-value=0.24 Score=48.21 Aligned_cols=143 Identities=17% Similarity=0.212 Sum_probs=104.8
Q ss_pred hHHHHHHhhcC----CChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcC-CCChhhHHHHHHHHHHhhcCChH
Q 014945 242 ALPALERLIHS----NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR-HPSPSVLIPALRTVGNIVTGDDM 316 (415)
Q Consensus 242 ~l~~l~~lL~~----~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~-~~~~~v~~~a~~~l~nl~~~~~~ 316 (415)
+-|.+.+...+ +|+.++..|.-++..+..-+.+. . ..-+|.++..+. +++|.+|..|.-.+|.++.+...
T Consensus 893 F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~f----c-~ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~ 967 (1128)
T COG5098 893 FKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEF----C-SEHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNT 967 (1128)
T ss_pred hhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHH----H-HHHHHHHHHHHhhCCCcceeccceeeccccceehhh
Confidence 44555555544 68899999888888765433222 1 123688888886 88999999999999998876543
Q ss_pred HHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHh
Q 014945 317 QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT 396 (415)
Q Consensus 317 ~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~ 396 (415)
.++. .-.+|..-|.+. +..||+.+..++.++.-.. .+--.|-++.+..+|.++|.++...|-..+..++
T Consensus 968 ~~de-----~t~yLyrrL~De-~~~V~rtclmti~fLilag-----q~KVKGqlg~ma~~L~deda~Isdmar~fft~~a 1036 (1128)
T COG5098 968 TADE-----HTHYLYRRLGDE-DADVRRTCLMTIHFLILAG-----QLKVKGQLGKMALLLTDEDAEISDMARHFFTQIA 1036 (1128)
T ss_pred hhHH-----HHHHHHHHhcch-hhHHHHHHHHHHHHHHHcc-----ceeeccchhhhHhhccCCcchHHHHHHHHHHHHH
Confidence 3332 235788888888 9999999999999887521 2223577889999999999999999988888888
Q ss_pred CCCC
Q 014945 397 SGGS 400 (415)
Q Consensus 397 ~~~~ 400 (415)
...+
T Consensus 1037 ~KdN 1040 (1128)
T COG5098 1037 KKDN 1040 (1128)
T ss_pred hccc
Confidence 6543
No 233
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=94.36 E-value=0.22 Score=41.31 Aligned_cols=125 Identities=18% Similarity=0.144 Sum_probs=80.4
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCchhHHHHH---------------hcCChHHHHHHhcc-----chhHhHHHHHHHHHHH
Q 014945 167 SSPTDDVREQAVWALGNVAGDSPKCRDLVL---------------SNGALMPLLAQFNE-----HAKLSMLRNATWTLSN 226 (415)
Q Consensus 167 ~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~---------------~~g~i~~L~~~l~~-----~~~~~~~~~a~~~l~~ 226 (415)
.+++......++..|+|++.....++..+- +...+..|+..+.+ .....-..+.+.+++|
T Consensus 5 ~~~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~N 84 (192)
T PF04063_consen 5 TDPKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLAN 84 (192)
T ss_pred cCCCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHH
Confidence 345556778888899999877665542321 12246677777744 2345567889999999
Q ss_pred hhhCCCCCchhhh--hc--hHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHc---CcHHHHHHhc
Q 014945 227 FCRGKPQPLFEQT--RP--ALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA---GVCPRLVELL 292 (415)
Q Consensus 227 l~~~~~~~~~~~~--~~--~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~---~~i~~L~~lL 292 (415)
+++......+... .. .+..|+.++++.+..-+.-++.+|.|+|-..+.. ..++.. ++++.|+--|
T Consensus 85 lS~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H-~~LL~~~~~~iLp~LLlPL 156 (192)
T PF04063_consen 85 LSQLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSH-EWLLSDDEVDILPYLLLPL 156 (192)
T ss_pred hcCCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHH-HHhcCchhhhhHHHHHhhc
Confidence 9987644444332 22 3777888888887777888899999999766544 334332 3444444444
No 234
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=94.27 E-value=1.7 Score=36.06 Aligned_cols=147 Identities=18% Similarity=0.164 Sum_probs=94.9
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhH
Q 014945 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 151 (415)
Q Consensus 72 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~ 151 (415)
-++.+++...+++..++..|+..+..++...-..|.. .+|.|+.+..+++ +.++..|...+..+....+....
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~------cvp~lIAL~ts~~-~~ir~~A~~~l~~l~eK~~s~v~ 81 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQ------CVPTLIALETSPN-PSIRSRAYQLLKELHEKHESLVE 81 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHH------HHhHhhhhhCCCC-hHHHHHHHHHHHHHHHHhHHHHH
Confidence 4688888888999999999999999887654223332 5899999999988 99999999999999886555444
Q ss_pred HHHhCCChHHHHHhhC---CC-CHHH---HHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccch-------hHhHH
Q 014945 152 VVIDHGAVPIFVRLLS---SP-TDDV---REQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA-------KLSML 217 (415)
Q Consensus 152 ~~~~~g~i~~L~~ll~---~~-~~~v---~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~-------~~~~~ 217 (415)
.-...| +..-..+-. .+ .... ....+..+..+...+...|..+ +..+++.+.... ...-.
T Consensus 82 ~~~~~g-i~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~F-----l~~l~k~f~~~~~~~~~~~~~~~l 155 (187)
T PF12830_consen 82 SRYSEG-IRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKF-----LKSLLKQFDFDLTKLSSESSPSDL 155 (187)
T ss_pred HHHHHH-HHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHH-----HHHHHHHHHhhccccccccchhHH
Confidence 333333 332222221 11 1111 4556666667776655566654 445666653221 33445
Q ss_pred HHHHHHHHHhhhCC
Q 014945 218 RNATWTLSNFCRGK 231 (415)
Q Consensus 218 ~~a~~~l~~l~~~~ 231 (415)
..++++..||+.-+
T Consensus 156 ~~~~Fla~nLA~l~ 169 (187)
T PF12830_consen 156 DFLLFLAENLATLP 169 (187)
T ss_pred HHHHHHHHHHhcCC
Confidence 56666666666553
No 235
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=94.19 E-value=0.44 Score=45.63 Aligned_cols=109 Identities=20% Similarity=0.192 Sum_probs=80.7
Q ss_pred hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCCh
Q 014945 236 FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD 315 (415)
Q Consensus 236 ~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~ 315 (415)
...+.+.+..++..+.+.|..|+..++.++..+++.-.+ ++..+-.|.+..|.+-+-+.++.|+..|+.+|..+-....
T Consensus 86 ~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~e-IDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~ 164 (885)
T COG5218 86 EELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVRE-IDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMEL 164 (885)
T ss_pred hHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcch-HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccC
Confidence 456688888888999999999999999999988865443 3445556788888888889999999999999988864332
Q ss_pred HHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHH
Q 014945 316 MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTI 350 (415)
Q Consensus 316 ~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l 350 (415)
.... .....+..+++..++.+||..|..-+
T Consensus 165 neen-----~~~n~l~~~vqnDPS~EVRr~allni 194 (885)
T COG5218 165 NEEN-----RIVNLLKDIVQNDPSDEVRRLALLNI 194 (885)
T ss_pred ChHH-----HHHHHHHHHHhcCcHHHHHHHHHHHe
Confidence 2111 22345667776665788888765443
No 236
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=94.11 E-value=5.9 Score=44.50 Aligned_cols=275 Identities=12% Similarity=0.073 Sum_probs=147.9
Q ss_pred CCCHHHHHHHHHHHHHHhccC--CCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCCh
Q 014945 82 SDDRNIQLDATTQFRKLLSIE--RSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAV 159 (415)
Q Consensus 82 ~~~~~~~~~a~~~l~~l~~~~--~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i 159 (415)
+.+..+...|+..|+++...- ..+....-.+..++..|..++.+....+++...+.|+.++.....+ -++. +.
T Consensus 1148 ~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~----nIkS-GW 1222 (1780)
T PLN03076 1148 SENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVN----NVKS-GW 1222 (1780)
T ss_pred CcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHh----hhhc-Cc
Confidence 346778888998888875422 1111112234457888888787655589999999999998763222 2233 46
Q ss_pred HHHHHhhC----CCCHHHHHHHHHHHHHhcCCCchh-----HHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHh---
Q 014945 160 PIFVRLLS----SPTDDVREQAVWALGNVAGDSPKC-----RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNF--- 227 (415)
Q Consensus 160 ~~L~~ll~----~~~~~v~~~a~~~L~nl~~~~~~~-----~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l--- 227 (415)
+.++.++. +.++.+.+.|..++..|..+.-.. .+.+.. .+..+..+..+..+..+--.++..|+++
T Consensus 1223 ktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~D--lV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~ 1300 (1780)
T PLN03076 1223 KSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTD--CVNCLIAFTNSRFNKDISLNAIAFLRFCATK 1300 (1780)
T ss_pred HHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHH--HHHHHHHHHhCcCcccccHHHHHHHHHHHHH
Confidence 66666665 467888889999888876442110 011111 3444444443332333333444334333
Q ss_pred -hhCCC-----------------------CC------ch---hhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccC---
Q 014945 228 -CRGKP-----------------------QP------LF---EQTRPALPALERLIHSNDDEVLTDACWALSYLSDG--- 271 (415)
Q Consensus 228 -~~~~~-----------------------~~------~~---~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~--- 271 (415)
+.+.. .. .. ..--+++..|..+..+++.+||..|+..|..+...
T Consensus 1301 La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~ 1380 (1780)
T PLN03076 1301 LAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGH 1380 (1780)
T ss_pred HHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhc
Confidence 11100 00 00 01123344455556678899999999988877532
Q ss_pred --ChHHHHHHHHcCcHHHHHHhcCCC------------------C-----hhhHHHHHHHHHHhh---cCChHHHHHHHH
Q 014945 272 --TNDKIQAVIEAGVCPRLVELLRHP------------------S-----PSVLIPALRTVGNIV---TGDDMQTQCIIN 323 (415)
Q Consensus 272 --~~~~~~~~~~~~~i~~L~~lL~~~------------------~-----~~v~~~a~~~l~nl~---~~~~~~~~~~~~ 323 (415)
+++....++. +++-+++..+++. + ..+...+..+|.+++ ...=+....+++
T Consensus 1381 ~Fs~~~W~~if~-~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~ 1459 (1780)
T PLN03076 1381 LFSLPLWERVFE-SVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLLK 1459 (1780)
T ss_pred cCCHHHHHHHHH-HHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2233333333 3445554444210 0 012233333444443 321122222222
Q ss_pred CCChHHHHHHhcCCCccchHHHHHHHHHHHhcC-----CHHHHHHHHH
Q 014945 324 HQALPCLLDLLTQNYKKSIKKEACWTISNITAG-----NVNQIQAIIE 366 (415)
Q Consensus 324 ~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~-----~~~~~~~l~~ 366 (415)
+++..|..++..+ +..+.+.++.+|.++... +++....+++
T Consensus 1460 -~~l~ll~~ci~q~-n~~la~ig~~~l~~li~~ng~~F~~~~W~~i~~ 1505 (1780)
T PLN03076 1460 -KVLMLLVSFIKRP-HQSLAGIGIAAFVRLMSNAGHLFSDEKWLEVVL 1505 (1780)
T ss_pred -HHHHHHHHHHcCc-hHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHH
Confidence 5666666677777 888888888888888752 4555555443
No 237
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=94.06 E-value=0.31 Score=40.50 Aligned_cols=109 Identities=10% Similarity=0.155 Sum_probs=73.7
Q ss_pred hHHHHHhhcCCCChHHHHHHHHHHHH-HhCCCchhhHHHHhCCChHHHHHhhCC---------CCHHHHHHHHHHHHHhc
Q 014945 116 VPRFIEFLSRDDFPQLQFEAAWALTN-IASGTSENTRVVIDHGAVPIFVRLLSS---------PTDDVREQAVWALGNVA 185 (415)
Q Consensus 116 i~~L~~ll~~~~~~~i~~~a~~~L~~-l~~~~~~~~~~~~~~g~i~~L~~ll~~---------~~~~v~~~a~~~L~nl~ 185 (415)
...+++.+.+.. ... ..+.-|.. +-..+......+++.|++..|+.+|.. .+..+...++.|+..|.
T Consensus 68 p~~~i~~L~~~~-~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~ 144 (187)
T PF06371_consen 68 PEWYIKKLKSRP-STS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALM 144 (187)
T ss_dssp HHHHHHHHTTT---HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHccC-ccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHH
Confidence 456677776654 221 22222222 223334677888888999999998853 45578889999999998
Q ss_pred CCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhh
Q 014945 186 GDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC 228 (415)
Q Consensus 186 ~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~ 228 (415)
....+....+-..+.+..++..| .+++..++..++..|+.+|
T Consensus 145 n~~~G~~~v~~~~~~v~~i~~~L-~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 145 NTKYGLEAVLSHPDSVNLIALSL-DSPNIKTRKLALEILAALC 186 (187)
T ss_dssp SSHHHHHHHHCSSSHHHHHHHT---TTSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCcHHHHHHHHHH-CCCCHHHHHHHHHHHHHHH
Confidence 77766555555577888888888 7888999999999998887
No 238
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=94.04 E-value=0.75 Score=44.11 Aligned_cols=117 Identities=16% Similarity=0.170 Sum_probs=81.9
Q ss_pred HhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHH
Q 014945 267 YLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEA 346 (415)
Q Consensus 267 ~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a 346 (415)
+.-..+++..+ ++ .|++..++..+.+++..|+..++.+|+-+...-. .++..+-.|++..|.+-+-+. .+.||.+|
T Consensus 77 Y~~~~dpeg~~-~V-~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~-eIDe~l~N~L~ekl~~R~~DR-E~~VR~eA 152 (885)
T COG5218 77 YDMPDDPEGEE-LV-AGTFYHLLRGTESKDKKVRKRSLQILALLSDVVR-EIDEVLANGLLEKLSERLFDR-EKAVRREA 152 (885)
T ss_pred hcCCCChhhhH-HH-HHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHHHhcc-hHHHHHHH
Confidence 44444444333 22 3677888888889999999999999988876443 234445558888888888788 89999999
Q ss_pred HHHHHHHhc--CCHHHHHHHHHcCCHHHHHHHhcc-CCHHHHHHHHHHHHHHhC
Q 014945 347 CWTISNITA--GNVNQIQAIIEAGIIGPLVNLLLN-AEFEIKKEAAWAISNATS 397 (415)
Q Consensus 347 ~~~l~nl~~--~~~~~~~~l~~~~~i~~L~~~l~~-~~~~v~~~a~~aL~nl~~ 397 (415)
..+|+.+-. +++++. +...|..++++ ++.+||..|+ .|+..
T Consensus 153 v~~L~~~Qe~~~neen~-------~~n~l~~~vqnDPS~EVRr~al---lni~v 196 (885)
T COG5218 153 VKVLCYYQEMELNEENR-------IVNLLKDIVQNDPSDEVRRLAL---LNISV 196 (885)
T ss_pred HHHHHHHHhccCChHHH-------HHHHHHHHHhcCcHHHHHHHHH---HHeee
Confidence 999999875 566543 34466666664 5678887654 45543
No 239
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=93.99 E-value=0.51 Score=38.29 Aligned_cols=112 Identities=21% Similarity=0.212 Sum_probs=80.8
Q ss_pred CcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHC--CChHHHHHHhcCCCccchHHHHHHHHHHHhc---CC
Q 014945 283 GVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINH--QALPCLLDLLTQNYKKSIKKEACWTISNITA---GN 357 (415)
Q Consensus 283 ~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~--~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~---~~ 357 (415)
..+.++..+|++.++.-+-.++..++.++..++. +.+.++ ..+..++.+++.+..+.+++.++.++..+.. +.
T Consensus 25 ~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~--e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~ 102 (165)
T PF08167_consen 25 KLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSW--EILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGK 102 (165)
T ss_pred HHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 3567899999999998899999999888876532 223233 4678888999887567889999999998885 55
Q ss_pred HHHHHHHHHc---CCHHHHHHHhccCCHHHHHHHHHHHHHHhCC
Q 014945 358 VNQIQAIIEA---GIIGPLVNLLLNAEFEIKKEAAWAISNATSG 398 (415)
Q Consensus 358 ~~~~~~l~~~---~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~ 398 (415)
++-.+++... ++++.++.+++. ..+...++.+|..+...
T Consensus 103 p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~ 144 (165)
T PF08167_consen 103 PTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPH 144 (165)
T ss_pred CchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHH
Confidence 6655555433 345556665553 56778888888888754
No 240
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=93.97 E-value=0.37 Score=48.54 Aligned_cols=152 Identities=18% Similarity=0.206 Sum_probs=85.8
Q ss_pred HHHHHHHhhhCCCCCchhhhhchHHHHHHhhcC----CChhHHHHHHHHHHHhcc----CC------hHHHHHHHHcCcH
Q 014945 220 ATWTLSNFCRGKPQPLFEQTRPALPALERLIHS----NDDEVLTDACWALSYLSD----GT------NDKIQAVIEAGVC 285 (415)
Q Consensus 220 a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~----~d~~v~~~a~~~l~~l~~----~~------~~~~~~~~~~~~i 285 (415)
+.+.+..+......+. ...+..+..++++ .++.+...|+-+++.+.. .. ... ...+...++
T Consensus 414 a~~~l~~l~~~~~~Pt----~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~-~~~~~~~~~ 488 (618)
T PF01347_consen 414 AAQLLASLPFHVRRPT----EELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPC-SRCIIEKYV 488 (618)
T ss_dssp HHHHHHHHHHT---------HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT------------SS--GGGT
T ss_pred HHHHHHHHHhhcCCCC----HHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeeccccccccccc-chhhHHHHH
Confidence 4444555444432222 2334445555543 356677777777777652 21 001 111223456
Q ss_pred HHHHHhcC----CCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCC--CccchHHHHHHHHHHHhcCCHH
Q 014945 286 PRLVELLR----HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN--YKKSIKKEACWTISNITAGNVN 359 (415)
Q Consensus 286 ~~L~~lL~----~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~--~~~~v~~~a~~~l~nl~~~~~~ 359 (415)
+.+...|. ..+..-+..++++|||+... ..++.+..++... ....+|..|+|++..++...++
T Consensus 489 ~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~-----------~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~ 557 (618)
T PF01347_consen 489 PYLEQELKEAVSRGDEEEKIVYLKALGNLGHP-----------ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPE 557 (618)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-G-----------GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HH
T ss_pred HHHHHHHHHHhhccCHHHHHHHHHHhhccCCc-----------hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcH
Confidence 66666654 45667888999999999642 2456677766544 2568999999999999877665
Q ss_pred HHHHHHHcCCHHHHHHHhcc--CCHHHHHHHHHHHHHH
Q 014945 360 QIQAIIEAGIIGPLVNLLLN--AEFEIKKEAAWAISNA 395 (415)
Q Consensus 360 ~~~~l~~~~~i~~L~~~l~~--~~~~v~~~a~~aL~nl 395 (415)
.+ .+.|+.++.+ .++++|..|..+|...
T Consensus 558 ~v--------~~~l~~I~~n~~e~~EvRiaA~~~lm~~ 587 (618)
T PF01347_consen 558 KV--------REILLPIFMNTTEDPEVRIAAYLILMRC 587 (618)
T ss_dssp HH--------HHHHHHHHH-TTS-HHHHHHHHHHHHHT
T ss_pred HH--------HHHHHHHhcCCCCChhHHHHHHHHHHhc
Confidence 43 4456666655 5688999888777664
No 241
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=93.96 E-value=3.4 Score=40.87 Aligned_cols=112 Identities=12% Similarity=0.112 Sum_probs=79.9
Q ss_pred HHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHH
Q 014945 280 IEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVN 359 (415)
Q Consensus 280 ~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~ 359 (415)
+...+++.|..-+++.+..++..++..+..++..-|. ..+..-++|.+..+.....+..++..++-+++-+..
T Consensus 386 ~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~---~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q---- 458 (700)
T KOG2137|consen 386 VKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDV---PFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQ---- 458 (700)
T ss_pred HHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccH---HHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHH----
Confidence 3456788888888999999999999999999876552 244556788888876554488899999999998873
Q ss_pred HHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhCC
Q 014945 360 QIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSG 398 (415)
Q Consensus 360 ~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~ 398 (415)
..+..--...+..+.+.....++.+......+..++...
T Consensus 459 ~lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~ 497 (700)
T KOG2137|consen 459 RLDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALI 497 (700)
T ss_pred HHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhh
Confidence 122221112355666666778888887777777776644
No 242
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=93.96 E-value=7.4 Score=38.84 Aligned_cols=251 Identities=15% Similarity=0.082 Sum_probs=129.7
Q ss_pred HHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCC--------CCHHHHHHHHHHHHHhcC----CCchhHHHHHhcCCh
Q 014945 134 EAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS--------PTDDVREQAVWALGNVAG----DSPKCRDLVLSNGAL 201 (415)
Q Consensus 134 ~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~--------~~~~v~~~a~~~L~nl~~----~~~~~~~~~~~~g~i 201 (415)
.|+.++..+.+..++.+ + .|+++.+...|.. .+..-.+.|++.++++.. .+| . .-+.+.=++
T Consensus 389 aal~fl~~~~sKrke~T--f--qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp-~-an~me~fiv 462 (970)
T COG5656 389 AALFFLIISKSKRKEET--F--QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSP-A-ANVMEYFIV 462 (970)
T ss_pred HHHHHHHHHhcccchhh--h--hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCch-H-HHHHHHHHH
Confidence 45555555555333322 2 3888999988832 234456778888887754 232 2 222333244
Q ss_pred HHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHH
Q 014945 202 MPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIE 281 (415)
Q Consensus 202 ~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~ 281 (415)
+.++..+ +++.--++..+|..++.+..+ -.+......+......++++++-.|+..|+-++..+..+.. ....+.
T Consensus 463 ~hv~P~f-~s~ygfL~Srace~is~~eeD--fkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q--~h~k~s 537 (970)
T COG5656 463 NHVIPAF-RSNYGFLKSRACEFISTIEED--FKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQ--SHEKFS 537 (970)
T ss_pred HHhhHhh-cCcccchHHHHHHHHHHHHHh--cccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchh--hhHHHH
Confidence 4555555 666777889999999999544 33334445667777788888888899999999988875543 223333
Q ss_pred c---CcHHHHHHhcCCCChhhHHHHHHHH-HHhhcCChHHHHHHHH---CCChHHHHHHhcCCCc-----cchHHHHHHH
Q 014945 282 A---GVCPRLVELLRHPSPSVLIPALRTV-GNIVTGDDMQTQCIIN---HQALPCLLDLLTQNYK-----KSIKKEACWT 349 (415)
Q Consensus 282 ~---~~i~~L~~lL~~~~~~v~~~a~~~l-~nl~~~~~~~~~~~~~---~~~l~~L~~ll~~~~~-----~~v~~~a~~~ 349 (415)
. +.++.|+.+-+.-+-++...++..+ +..+..-......+.. ..++.....++.++.+ ++-+..|...
T Consensus 538 ahVp~tmekLLsLSn~feiD~LS~vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGi 617 (970)
T COG5656 538 AHVPETMEKLLSLSNTFEIDPLSMVMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGI 617 (970)
T ss_pred hhhhHHHHHHHHhcccccchHHHHHHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHH
Confidence 3 3344444444333333333333322 2222111111111111 1233344444433311 1223334444
Q ss_pred HHHHhc------CCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHh
Q 014945 350 ISNITA------GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT 396 (415)
Q Consensus 350 l~nl~~------~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~ 396 (415)
|..+.+ ..+...+.+.. ...|.+--++++.-.++-.+|+..+-+++
T Consensus 618 L~T~~smiLSlen~p~vLk~le~-slypvi~Filkn~i~dfy~Ea~dildg~t 669 (970)
T COG5656 618 LRTIESMILSLENRPLVLKYLEV-SLYPVISFILKNEISDFYQEALDILDGYT 669 (970)
T ss_pred HHHHHHHHHhcccchHHHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHhhhh
Confidence 443332 24443333332 25555555556555666666666555544
No 243
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.91 E-value=0.94 Score=39.95 Aligned_cols=140 Identities=16% Similarity=0.162 Sum_probs=99.3
Q ss_pred HHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHH
Q 014945 202 MPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIE 281 (415)
Q Consensus 202 ~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~ 281 (415)
...+..| .+.+.......+..+..|+...+..-......++..+++-+++....|-..||.+++.+.....+.+..
T Consensus 91 ~~~l~~L-~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~--- 166 (334)
T KOG2933|consen 91 KQALKKL-SSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQ--- 166 (334)
T ss_pred HHHHHHh-chHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 3344555 566666777777777777777665555566778888889999999999999999999988665544433
Q ss_pred cCcHHHHHHhc-C---CCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhc
Q 014945 282 AGVCPRLVELL-R---HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 355 (415)
Q Consensus 282 ~~~i~~L~~lL-~---~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~ 355 (415)
-++.++..| . .++.-+++.|-.+|-.++..-..+ .+++.|...+.+. .+.++..++.++.++..
T Consensus 167 --~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~-------~~L~~L~~~~~~~-n~r~r~~a~~~~~~~v~ 234 (334)
T KOG2933|consen 167 --ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ-------KLLRKLIPILQHS-NPRVRAKAALCFSRCVI 234 (334)
T ss_pred --HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH-------HHHHHHHHHHhhh-chhhhhhhhccccccce
Confidence 233344433 2 234457888888888887654332 3467888889888 99999999988887764
No 244
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=93.83 E-value=4 Score=35.31 Aligned_cols=204 Identities=19% Similarity=0.171 Sum_probs=120.5
Q ss_pred hHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHH
Q 014945 116 VPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLV 195 (415)
Q Consensus 116 i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~ 195 (415)
++.|+.-+....++..+...+..|..++........ -++..+..+...+.......+...+..+...++..-
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~-----~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f--- 73 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVP-----PVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF--- 73 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchh-----HHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH---
Confidence 455555344433489999999999999986422222 235566667777777776677777777765554221
Q ss_pred HhcCChHHHHHHh---------ccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhh-cCCChhHHHHHHHHH
Q 014945 196 LSNGALMPLLAQF---------NEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLI-HSNDDEVLTDACWAL 265 (415)
Q Consensus 196 ~~~g~i~~L~~~l---------~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL-~~~d~~v~~~a~~~l 265 (415)
+.+..++..+ ..+...+.......++..+|...|. ....+++.+..+| +++++.++..++.++
T Consensus 74 ---~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l 146 (234)
T PF12530_consen 74 ---PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEAL 146 (234)
T ss_pred ---HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 2344444441 1122344555666788888887665 4456788888888 788888999999999
Q ss_pred HHhccCChHHHHHHHHcCcHHHHHHhcCCC-ChhhHHHHHHHHHHhhcCCh-HHHHHHHHCCChHHHHHHhcCCCcc
Q 014945 266 SYLSDGTNDKIQAVIEAGVCPRLVELLRHP-SPSVLIPALRTVGNIVTGDD-MQTQCIINHQALPCLLDLLTQNYKK 340 (415)
Q Consensus 266 ~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~~l~nl~~~~~-~~~~~~~~~~~l~~L~~ll~~~~~~ 340 (415)
..++...-- + +. .....+..-|+.+ .+.+....+..++.+..+.- ..........++..+.++..+. +.
T Consensus 147 ~~Lc~~~vv--d-~~--s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~-~~ 217 (234)
T PF12530_consen 147 APLCEAEVV--D-FY--SAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSS-DV 217 (234)
T ss_pred HHHHHHhhc--c-HH--HHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhcccc-cc
Confidence 999943221 1 11 1233444444433 34555544444444443322 1112234446677777777766 43
No 245
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=93.82 E-value=5.8 Score=37.08 Aligned_cols=223 Identities=11% Similarity=0.060 Sum_probs=119.0
Q ss_pred CHHHHHHHHHHHHHhcCCCchhHHHHHhc---CChHHHHHHhc-cchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHH
Q 014945 170 TDDVREQAVWALGNVAGDSPKCRDLVLSN---GALMPLLAQFN-EHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPA 245 (415)
Q Consensus 170 ~~~v~~~a~~~L~nl~~~~~~~~~~~~~~---g~i~~L~~~l~-~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~ 245 (415)
+..+..+|+.+++.+..+..-. ..+-.. -++...+..+. .+.+..+...++|+++.=-.............++..
T Consensus 59 ~~~L~~qALkll~~~l~~~~i~-~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~~ 137 (372)
T PF12231_consen 59 DSRLVIQALKLLGFFLYHPEIV-STLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPKIMTSDRVERLLAA 137 (372)
T ss_pred chHHHHHHHHHHHHHHccHHHH-hhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCcccchhhHHHHHHH
Confidence 6789999999999987554321 111111 02444455553 334667888888887753222111111111222222
Q ss_pred HHHhhc-CCChhHHHHHHHHHHHhccCChHHHHHHHHcC-cHHHHHHhcCCCChhhHHHHHHHHHHhhc--CChHH-H--
Q 014945 246 LERLIH-SNDDEVLTDACWALSYLSDGTNDKIQAVIEAG-VCPRLVELLRHPSPSVLIPALRTVGNIVT--GDDMQ-T-- 318 (415)
Q Consensus 246 l~~lL~-~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~-~i~~L~~lL~~~~~~v~~~a~~~l~nl~~--~~~~~-~-- 318 (415)
+..+-+ -+...+....+.++.++....+.... ...+ .++.++..+-+....++..|...+-.+.. +.... .
T Consensus 138 l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~--~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~ 215 (372)
T PF12231_consen 138 LHNIKNRFPSKSIISERLNIYKRLLSQFPQQMI--KHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKS 215 (372)
T ss_pred HHHhhccCCchhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHH
Confidence 222222 34567888899999999876654321 1222 57777777777777777765554444432 22111 1
Q ss_pred -HHHHH----CC-----ChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHH-HHHHHHHcCCHHHHHHHhccCCHHHHHH
Q 014945 319 -QCIIN----HQ-----ALPCLLDLLTQNYKKSIKKEACWTISNITAGNVN-QIQAIIEAGIIGPLVNLLLNAEFEIKKE 387 (415)
Q Consensus 319 -~~~~~----~~-----~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~-~~~~l~~~~~i~~L~~~l~~~~~~v~~~ 387 (415)
...++ .+ +.+.|..++.+. +.....--.|...-..-+++. .....++ ..+...-..+.++|+.+|..
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~L~~mi~~~-~~~~~a~~iW~~~i~LL~~~~~~~w~~~n-~wL~v~e~cFn~~d~~~k~~ 293 (372)
T PF12231_consen 216 VLEDLQRSLENGKLIQLYCERLKEMIKSK-DEYKLAMQIWSVVILLLGSSRLDSWEHLN-EWLKVPEKCFNSSDPQVKIQ 293 (372)
T ss_pred HHHHhccccccccHHHHHHHHHHHHHhCc-CCcchHHHHHHHHHHHhCCchhhccHhHh-HHHHHHHHHhcCCCHHHHHH
Confidence 11222 12 344477777774 344444445544433333221 1111111 24555555677899999999
Q ss_pred HHHHHHHHhC
Q 014945 388 AAWAISNATS 397 (415)
Q Consensus 388 a~~aL~nl~~ 397 (415)
|..|-..+..
T Consensus 294 A~~aW~~liy 303 (372)
T PF12231_consen 294 AFKAWRRLIY 303 (372)
T ss_pred HHHHHHHHHH
Confidence 9888877764
No 246
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=93.79 E-value=5.8 Score=37.05 Aligned_cols=306 Identities=15% Similarity=0.158 Sum_probs=156.9
Q ss_pred CCCHHHHHHHHHHHHHHhccCCCCchh-HHHhcCchHHHHHhhc----C------CCChHHHHHHHHHHHHHhCCCchhh
Q 014945 82 SDDRNIQLDATTQFRKLLSIERSPPIN-EVIQSGVVPRFIEFLS----R------DDFPQLQFEAAWALTNIASGTSENT 150 (415)
Q Consensus 82 ~~~~~~~~~a~~~l~~l~~~~~~~~~~-~~~~~g~i~~L~~ll~----~------~~~~~i~~~a~~~L~~l~~~~~~~~ 150 (415)
+.+.+.+..|-..|.+.+...++.+.. .+.+ -++.|+++++ + +.+..+-.+|+.+|+.+... ++..
T Consensus 4 ~~~~~~r~daY~~l~~~l~~~~~~~~~~~l~~--k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~-~~i~ 80 (372)
T PF12231_consen 4 GSDRSSRLDAYMTLNNALKAYDNLPDRQALQD--KMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYH-PEIV 80 (372)
T ss_pred cCCcHHHHHHHHHHHHHHHHhcCCCcHHHHHH--HHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHcc-HHHH
Confidence 345556666666666665544322222 2222 2444444433 1 11267888999999998874 4444
Q ss_pred HHHHhC---CChHHHHHhhCC--CCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhc---c-chhHhHHHHHH
Q 014945 151 RVVIDH---GAVPIFVRLLSS--PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN---E-HAKLSMLRNAT 221 (415)
Q Consensus 151 ~~~~~~---g~i~~L~~ll~~--~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~---~-~~~~~~~~~a~ 221 (415)
..+-+. -++...+..+.+ .+..+...++|+|..--... .+.....+..++..+. + -++..+....+
T Consensus 81 ~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~-----~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL 155 (372)
T PF12231_consen 81 STLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSP-----KIMTSDRVERLLAALHNIKNRFPSKSIISERL 155 (372)
T ss_pred hhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCC-----cccchhhHHHHHHHHHHhhccCCchhHHHHHH
Confidence 333322 135556666644 34567778888887543222 2333334445555442 2 34567788888
Q ss_pred HHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhcc--CCh-HHHH---HHHH----cC-----cHH
Q 014945 222 WTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSD--GTN-DKIQ---AVIE----AG-----VCP 286 (415)
Q Consensus 222 ~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~--~~~-~~~~---~~~~----~~-----~i~ 286 (415)
.++.++....|..-......=+|.++..+-+....++..|......+.. +.+ .... ...+ .+ +.+
T Consensus 156 ~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 235 (372)
T PF12231_consen 156 NIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENGKLIQLYCE 235 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccccHHHHHHH
Confidence 8888888765433222333346677766666777777766555544431 111 1111 1111 12 334
Q ss_pred HHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHh---cCCHHHHHH
Q 014945 287 RLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNIT---AGNVNQIQA 363 (415)
Q Consensus 287 ~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~---~~~~~~~~~ 363 (415)
.|..++.+.+......-+|..--..-+.+.....-.-...+...-..++++ ++.+|..|..+=..+. ..++.....
T Consensus 236 ~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e~cFn~~-d~~~k~~A~~aW~~liy~~~~~~~~~~k 314 (372)
T PF12231_consen 236 RLKEMIKSKDEYKLAMQIWSVVILLLGSSRLDSWEHLNEWLKVPEKCFNSS-DPQVKIQAFKAWRRLIYASNPNELTSPK 314 (372)
T ss_pred HHHHHHhCcCCcchHHHHHHHHHHHhCCchhhccHhHhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhcCCccccHH
Confidence 466666664444444444443333333321111111113455555567777 8888887765433333 222332233
Q ss_pred HHHcCCHHHHHHHhcc-CCH----HHHHHHHHHHHHHhC
Q 014945 364 IIEAGIIGPLVNLLLN-AEF----EIKKEAAWAISNATS 397 (415)
Q Consensus 364 l~~~~~i~~L~~~l~~-~~~----~v~~~a~~aL~nl~~ 397 (415)
.+.- +..++...++. ... +++..+...++++..
T Consensus 315 ~l~l-L~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~lly 352 (372)
T PF12231_consen 315 RLKL-LCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLLY 352 (372)
T ss_pred HHHH-HHHHHHHHhCccccccccHHHHHHHHHHHhchHH
Confidence 3332 33344444443 233 677888888888863
No 247
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=93.75 E-value=3.9 Score=41.22 Aligned_cols=196 Identities=16% Similarity=0.126 Sum_probs=108.2
Q ss_pred chHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCC----CCHHHHHHHHHHHHHhcC----
Q 014945 115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS----PTDDVREQAVWALGNVAG---- 186 (415)
Q Consensus 115 ~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~----~~~~v~~~a~~~L~nl~~---- 186 (415)
.+..+.+++.+.. ---..|++.|..+......-... .+..+..++.+ .++.++..|+-+++.+..
T Consensus 396 av~~i~~~I~~~~--~~~~ea~~~l~~l~~~~~~Pt~e-----~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~ 468 (618)
T PF01347_consen 396 AVKFIKDLIKSKK--LTDDEAAQLLASLPFHVRRPTEE-----LLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCV 468 (618)
T ss_dssp HHHHHHHHHHTT---S-HHHHHHHHHHHHHT-----HH-----HHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCC--CCHHHHHHHHHHHHhhcCCCCHH-----HHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceee
Confidence 3556667777643 22233445555544432122222 35556666664 456788888888888752
Q ss_pred CC-----chhHHHHHhcCChHHHHHHhc---cchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCC---Ch
Q 014945 187 DS-----PKCRDLVLSNGALMPLLAQFN---EHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSN---DD 255 (415)
Q Consensus 187 ~~-----~~~~~~~~~~g~i~~L~~~l~---~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~---d~ 255 (415)
.. ............++.+...+. ...+..-+..++.+|.|+-. ...++.+.+.+... +.
T Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~----------~~~i~~l~~~i~~~~~~~~ 538 (618)
T PF01347_consen 469 NSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH----------PESIPVLLPYIEGKEEVPH 538 (618)
T ss_dssp T-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-----------GGGHHHHHTTSTTSS-S-H
T ss_pred cccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC----------chhhHHHHhHhhhccccch
Confidence 21 001112222335677777774 23355777888999999864 35778888888766 67
Q ss_pred hHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCC--CChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHH
Q 014945 256 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH--PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDL 333 (415)
Q Consensus 256 ~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~--~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~l 333 (415)
.++..|++++..+....++... +.+++++.+ .+.++|..|+..|-. ..|.. ..+..+...
T Consensus 539 ~~R~~Ai~Alr~~~~~~~~~v~--------~~l~~I~~n~~e~~EvRiaA~~~lm~---~~P~~-------~~l~~i~~~ 600 (618)
T PF01347_consen 539 FIRVAAIQALRRLAKHCPEKVR--------EILLPIFMNTTEDPEVRIAAYLILMR---CNPSP-------SVLQRIAQS 600 (618)
T ss_dssp HHHHHHHHTTTTGGGT-HHHHH--------HHHHHHHH-TTS-HHHHHHHHHHHHH---T---H-------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCcHHHH--------HHHHHHhcCCCCChhHHHHHHHHHHh---cCCCH-------HHHHHHHHH
Confidence 8999999999998777665533 667777654 356788888765533 22322 235567777
Q ss_pred hcCCCccchHHH
Q 014945 334 LTQNYKKSIKKE 345 (415)
Q Consensus 334 l~~~~~~~v~~~ 345 (415)
+....+..|...
T Consensus 601 l~~E~~~QV~sf 612 (618)
T PF01347_consen 601 LWNEPSNQVASF 612 (618)
T ss_dssp HTT-S-HHHHHH
T ss_pred HhhCchHHHHHH
Confidence 765534444443
No 248
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=93.71 E-value=6.3 Score=37.18 Aligned_cols=190 Identities=13% Similarity=0.132 Sum_probs=117.7
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHHhCCCc---hhhHHHHhCCChHHHHHhhCC-------CCHHHHHHHHHHHHHhcCCC
Q 014945 119 FIEFLSRDDFPQLQFEAAWALTNIASGTS---ENTRVVIDHGAVPIFVRLLSS-------PTDDVREQAVWALGNVAGDS 188 (415)
Q Consensus 119 L~~ll~~~~~~~i~~~a~~~L~~l~~~~~---~~~~~~~~~g~i~~L~~ll~~-------~~~~v~~~a~~~L~nl~~~~ 188 (415)
+..++...+ .+-|+.|+...+.++.+.+ ..++.+.+.=+++.+-+++.+ ++.-.+..++..|.-+|.+.
T Consensus 16 ~~~L~~~k~-D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~p 94 (698)
T KOG2611|consen 16 CLKLLKGKR-DEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVP 94 (698)
T ss_pred HHHHhcccC-hHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCCh
Confidence 556666666 7888999999999888543 344567777678888888865 34456777888888888765
Q ss_pred chh-HHHHHhcCChHHHHHHhccchhHh------HHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHH-
Q 014945 189 PKC-RDLVLSNGALMPLLAQFNEHAKLS------MLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTD- 260 (415)
Q Consensus 189 ~~~-~~~~~~~g~i~~L~~~l~~~~~~~------~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~- 260 (415)
+-. ...++. .||.|+..+.+..+++ +...+..+|..++...+........|.++.+.++-.-++...-..
T Consensus 95 ElAsh~~~v~--~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~al 172 (698)
T KOG2611|consen 95 ELASHEEMVS--RIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPDGSHDMAL 172 (698)
T ss_pred hhccCHHHHH--hhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCCCchhHHH
Confidence 421 122333 6888888886544444 888999999999988777777777899999987665443221111
Q ss_pred HHHHHHH----hccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCC
Q 014945 261 ACWALSY----LSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGD 314 (415)
Q Consensus 261 a~~~l~~----l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~ 314 (415)
++..+.- +-..+.. ...+.. ++..+..-+...+...+-..|+.|+.+....
T Consensus 173 al~Vlll~~~~~~cw~e~-~~~fla--li~~va~df~~~~~a~KfElc~lL~~vl~~~ 227 (698)
T KOG2611|consen 173 ALKVLLLLVSKLDCWSET-IERFLA--LIAAVARDFAVLHNALKFELCHLLSAVLSSE 227 (698)
T ss_pred HHHHHHHHHHhcccCcCC-HHHHHH--HHHHHHHHHHHhhhHHHHHHHHHHHHHHhCC
Confidence 1111111 1112211 111221 1344444444445556777888888766543
No 249
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=93.69 E-value=1.1 Score=41.64 Aligned_cols=148 Identities=14% Similarity=0.130 Sum_probs=85.8
Q ss_pred HHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhc------CCChhHHHHHHHHHHH
Q 014945 194 LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH------SNDDEVLTDACWALSY 267 (415)
Q Consensus 194 ~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~------~~d~~v~~~a~~~l~~ 267 (415)
.+.+..-.+.+-+-+..+...+-++.|+..+..|+..........+. ..+..++. +.+..-...|+..++.
T Consensus 205 ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~---~~i~~~l~~y~~~~~~~w~~KD~Al~Li~a 281 (370)
T PF08506_consen 205 ELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSILM---QYIQQLLQQYASNPSNNWRSKDGALYLIGA 281 (370)
T ss_dssp HHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH-TTT-HHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHHH---HHHHHHHHHHhhCCcccHHHHHHHHHHHHH
Confidence 34444455555555533334456778888898998653221112222 22333333 2356677788888888
Q ss_pred hccCChH------------HHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhc
Q 014945 268 LSDGTND------------KIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLT 335 (415)
Q Consensus 268 l~~~~~~------------~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~ 335 (415)
++..... .+..++...++|.|. -=.+..+-++..|++.+...-..-+. +.+ .+++|.++..|.
T Consensus 282 la~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~--~~l--~~~~~~l~~~L~ 356 (370)
T PF08506_consen 282 LASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPK--EQL--LQIFPLLVNHLQ 356 (370)
T ss_dssp HHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-H--HHH--HHHHHHHHHHTT
T ss_pred HHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCH--HHH--HHHHHHHHHHhC
Confidence 8754321 234455555666665 11234567888899998887765432 112 257999999999
Q ss_pred CCCccchHHHHHHHH
Q 014945 336 QNYKKSIKKEACWTI 350 (415)
Q Consensus 336 ~~~~~~v~~~a~~~l 350 (415)
++ +..|+..|+.++
T Consensus 357 ~~-~~vv~tyAA~~i 370 (370)
T PF08506_consen 357 SS-SYVVHTYAAIAI 370 (370)
T ss_dssp SS--HHHHHHHHHHH
T ss_pred CC-CcchhhhhhhhC
Confidence 99 999999999875
No 250
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.64 E-value=0.99 Score=44.28 Aligned_cols=193 Identities=16% Similarity=0.132 Sum_probs=110.9
Q ss_pred HhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCC--C-CCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhcc--
Q 014945 196 LSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK--P-QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSD-- 270 (415)
Q Consensus 196 ~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~--~-~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~-- 270 (415)
++.|+++.++..-..-+...+....-.+|+.+.... . ........-.-|.|..-|+-.+..|+.+|+..+.++-.
T Consensus 126 iE~d~iq~~~~haiha~rsp~~sk~r~Vl~~F~hqkk~~qgVeeml~rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~ 205 (1005)
T KOG1949|consen 126 IENDCIQDFMFHAIHAPRSPVHSKVREVLSYFHHQKKVRQGVEEMLYRLYKPILWRGLKARNSEVRSNAALLFVEAFPIR 205 (1005)
T ss_pred HhhhHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHhhccCchhhhhhHHHHHHHhccCC
Confidence 456677776665433333334444444555555433 1 11222223445677888899999999999999998753
Q ss_pred CCh---HHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCCh----HHHHHHhcCCCccchH
Q 014945 271 GTN---DKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQAL----PCLLDLLTQNYKKSIK 343 (415)
Q Consensus 271 ~~~---~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l----~~L~~ll~~~~~~~v~ 343 (415)
+++ +..+.+++. =...+.++|.++-+.+|..|..-+..+... ...++....+ ..+..-+......+||
T Consensus 206 dpd~~~e~mD~i~~k-Qf~~l~~LL~d~~p~VRS~a~~gv~k~~s~----fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR 280 (1005)
T KOG1949|consen 206 DPDLHAEEMDSIIQK-QFEELYSLLEDPYPMVRSTAILGVCKITSK----FWEMIPPTILIDLLKKITDELAFDTSSDVR 280 (1005)
T ss_pred CCCccHHHHHHHHHH-HHHHHHHHhcCCCchHHHHHHHHHHHHHHH----HHHHcCHHHHHHHHHHHHHHhhhccchhee
Confidence 222 223334433 347799999999999999988777766542 2223322222 2233222222255677
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHh
Q 014945 344 KEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT 396 (415)
Q Consensus 344 ~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~ 396 (415)
......|-.+... |. ...+.+. ++|.|-..|.+...+||-++...|..+-
T Consensus 281 ~svf~gl~~~l~n-p~-sh~~le~-~Lpal~~~l~D~se~VRvA~vd~ll~ik 330 (1005)
T KOG1949|consen 281 CSVFKGLPMILDN-PL-SHPLLEQ-LLPALRYSLHDNSEKVRVAFVDMLLKIK 330 (1005)
T ss_pred hhHhcCcHHHHcC-cc-chhHHHH-HHHhcchhhhccchhHHHHHHHHHHHHH
Confidence 7777666666653 11 1222332 4556666667777777777766666553
No 251
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=93.62 E-value=1.5 Score=44.47 Aligned_cols=195 Identities=18% Similarity=0.212 Sum_probs=118.9
Q ss_pred HHHHHhCCCchhhHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChH--HHHHHhccchhH
Q 014945 138 ALTNIASGTSENTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALM--PLLAQFNEHAKL 214 (415)
Q Consensus 138 ~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~--~L~~~l~~~~~~ 214 (415)
++.++...+++....+++.|++..+...+.. .+.+++..++..++|++...+. +........+. .+-.++.+..+.
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~-~~~~~~~~~~~~~~f~~~~~~w~~~ 572 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLEL-RELLMIFEFIDFSVFKVLLNKWDSI 572 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhh-hhhhhHHHHHHHHHHHHHHhhcchh
Confidence 6778888889999999999999999999986 5678999999999999965532 22221111222 333344344455
Q ss_pred hHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcC-
Q 014945 215 SMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR- 293 (415)
Q Consensus 215 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~- 293 (415)
+.-..++..++.+....+...... .-+.+......++....... +......-+.+.+..++.
T Consensus 573 ersY~~~siLa~ll~~~~~~~~~~--------------~r~~~~~~l~e~i~~~~~~~---~~~~~~~~f~~~~~~il~~ 635 (699)
T KOG3665|consen 573 ERSYNAASILALLLSDSEKTTECV--------------FRNSVNELLVEAISRWLTSE---IRVINDRSFFPRILRILRL 635 (699)
T ss_pred hHHHHHHHHHHHHHhCCCcCcccc--------------chHHHHHHHHHHhhccCccc---eeehhhhhcchhHHHHhcc
Confidence 777788888887776542211000 01122222222333322211 111111112221444443
Q ss_pred CCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHH
Q 014945 294 HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTI 350 (415)
Q Consensus 294 ~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l 350 (415)
+..+..+..|+|++.+++...++....+.+.|+++.+.+.-.......++.++...+
T Consensus 636 s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 692 (699)
T KOG3665|consen 636 SKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVI 692 (699)
T ss_pred cCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHh
Confidence 345678899999999999998888888888899988888766553344444444443
No 252
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=93.39 E-value=0.81 Score=36.89 Aligned_cols=146 Identities=10% Similarity=0.085 Sum_probs=86.8
Q ss_pred hhchHHHHHHhhcCC-ChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhc-CCCChhhHHHHHHHHHHhhcCChH
Q 014945 239 TRPALPALERLIHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-RHPSPSVLIPALRTVGNIVTGDDM 316 (415)
Q Consensus 239 ~~~~l~~l~~lL~~~-d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL-~~~~~~v~~~a~~~l~nl~~~~~~ 316 (415)
...+++.|..+|+++ +..++.+++++++.+..-++...+.+... . + ..- ...+.......+... +.....++
T Consensus 8 yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~-~-~---~~~~~~~~~~~~~~~l~~~-~~~~~~ee 81 (160)
T PF11865_consen 8 YPELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKS-L-D---SKSSENSNDESTDISLPMM-GISPSSEE 81 (160)
T ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhccccc-C-C---ccccccccccchhhHHhhc-cCCCchHH
Confidence 356788888888766 58899999999999988777654422111 0 1 000 111111222222111 12112222
Q ss_pred HHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcC-CHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHH
Q 014945 317 QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNA 395 (415)
Q Consensus 317 ~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~-~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl 395 (415)
..-..++..|+.+|+++.-..-+..+..++.++... .... -..+.. ++|.+++.+...+...++...+-|+.+
T Consensus 82 ----~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~c-v~~L~~-viP~~l~~i~~~~~~~~e~~~~qL~~l 155 (160)
T PF11865_consen 82 ----YYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKC-VPYLPQ-VIPIFLRVIRTCPDSLREFYFQQLADL 155 (160)
T ss_pred ----HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCc-hhHHHH-HhHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 223345678888888773445555677787777742 1222 233333 899999999987778888888888776
Q ss_pred h
Q 014945 396 T 396 (415)
Q Consensus 396 ~ 396 (415)
.
T Consensus 156 v 156 (160)
T PF11865_consen 156 V 156 (160)
T ss_pred H
Confidence 5
No 253
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=93.37 E-value=3.7 Score=40.23 Aligned_cols=252 Identities=15% Similarity=0.207 Sum_probs=126.0
Q ss_pred hHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCCCC--HHHHHHHHHHHHHhcCCCchhHH
Q 014945 116 VPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPT--DDVREQAVWALGNVAGDSPKCRD 193 (415)
Q Consensus 116 i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~--~~v~~~a~~~L~nl~~~~~~~~~ 193 (415)
+-.|...+++++ ..++..|+.-|+-.-.++ +++.+.. .|..++.+.+ .++...|..+|+.+..++.. .
T Consensus 454 lALLsdyv~~~~-s~~ri~aIlGLglayaGs--q~e~V~~-----lL~Pi~~d~~~~~ev~~~aslsLG~IfvGscn--~ 523 (878)
T KOG2005|consen 454 LALLSDYLQSSS-SIHRIGAILGLGLAYAGS--QREEVLE-----LLSPIMFDTKSPMEVVAFASLSLGMIFVGSCN--E 523 (878)
T ss_pred HHHHHHhccCCC-ceeehHHhhhhHHhhcCC--chHHHHH-----HHhHHhcCCCCchhHHHHHHhhcceeEEecCC--h
Confidence 445667777777 788888888887655442 3333321 4555665543 45777788888888754431 1
Q ss_pred HHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhc---c
Q 014945 194 LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLS---D 270 (415)
Q Consensus 194 ~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~---~ 270 (415)
.+ ...+++.++..=.........+.....|.-+..+.. ..+...+.-+..-...++..+-..+..++ .
T Consensus 524 dv-ts~ilqtlmekse~El~d~~~RFL~LGL~llflgkq--------e~~d~~~e~~~~i~~~~~~~~~~lv~~caYaGT 594 (878)
T KOG2005|consen 524 DV-TSSILQTLMEKSETELEDQWFRFLALGLALLFLGKQ--------ESVDAVVETIKAIEGPIRKHESILVKSCAYAGT 594 (878)
T ss_pred HH-HHHHHHHHHHhhhhhhhchHHHHHHHHHHHHHhccc--------chHHHHHHHHHHhhhHHHHHHHHHHHHhhcccc
Confidence 11 111333333332111233445555555555554432 11122222222222222222211111111 1
Q ss_pred CChHHHHHHHHcCcHHHHHHhcCCCC---hhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHH
Q 014945 271 GTNDKIQAVIEAGVCPRLVELLRHPS---PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEAC 347 (415)
Q Consensus 271 ~~~~~~~~~~~~~~i~~L~~lL~~~~---~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~ 347 (415)
++.-.++ . ..+..+-.... ..-...|+--++-++.+.+-..+. .+..+-.++..+ ++.+|+..-
T Consensus 595 Gnvl~Iq----~---q~ll~~cgE~~~~~e~~~~~avLgiAliAMgeeig~eM-----~lR~f~h~l~yg-e~~iRravP 661 (878)
T KOG2005|consen 595 GNVLKIQ----S---QLLLSFCGEHDADLESEQELAVLGIALIAMGEEIGSEM-----VLRHFGHLLHYG-EPHIRRAVP 661 (878)
T ss_pred CceEEec----h---hhhhhhcCCCccchhhhccchhhhhhhhhhhhhhhhHH-----HHHHHHHHHHcC-CHHHHHHHH
Confidence 1111111 0 11222222111 122234555555666665533332 234556666777 778888877
Q ss_pred HHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCHHHHHH
Q 014945 348 WTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKY 406 (415)
Q Consensus 348 ~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~ 406 (415)
.+++-++..+|.. +++..|-++..+.|.++...|+.+++-+-.+-+...+..
T Consensus 662 Lal~llsvSNPq~-------~vlDtLsk~shd~D~eva~naIfamGLiGAGTnNARla~ 713 (878)
T KOG2005|consen 662 LALGLLSVSNPQV-------NVLDTLSKFSHDGDLEVAMNAIFAMGLIGAGTNNARLAQ 713 (878)
T ss_pred HHHhhhccCCCcc-------hHHHHHHHhccCcchHHHHHHHHHhccccCCcchHHHHH
Confidence 8888777766643 266777777777888888888888777766555444433
No 254
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=93.37 E-value=2 Score=35.32 Aligned_cols=109 Identities=15% Similarity=0.140 Sum_probs=78.0
Q ss_pred HHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCC-------------------ChHHHHHHhcCCCccchHHHHH
Q 014945 287 RLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQ-------------------ALPCLLDLLTQNYKKSIKKEAC 347 (415)
Q Consensus 287 ~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~-------------------~l~~L~~ll~~~~~~~v~~~a~ 347 (415)
.+--++.++++.+|..|+.++..+..+...+....-+.+ +-..|...++.+.+..+....+
T Consensus 44 Llt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~l 123 (182)
T PF13251_consen 44 LLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLL 123 (182)
T ss_pred hhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 344456788999999999999999988764443333211 2345666677766788888999
Q ss_pred HHHHHHhcCCHHHHHHHHHcCC----HHHHHHHhccCCHHHHHHHHHHHHHHhCC
Q 014945 348 WTISNITAGNVNQIQAIIEAGI----IGPLVNLLLNAEFEIKKEAAWAISNATSG 398 (415)
Q Consensus 348 ~~l~nl~~~~~~~~~~l~~~~~----i~~L~~~l~~~~~~v~~~a~~aL~nl~~~ 398 (415)
.++..++..+|-.+- +.|+ +..+..++.+.|++++..++.+++-+...
T Consensus 124 K~la~Lv~~tPY~rL---~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 124 KCLAVLVQATPYHRL---PPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSV 175 (182)
T ss_pred HHHHHHHccCChhhc---CHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence 999999987655432 2334 45555566779999999999999988754
No 255
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.96 E-value=11 Score=37.91 Aligned_cols=271 Identities=12% Similarity=0.101 Sum_probs=139.4
Q ss_pred hHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHh--CCChHHHHHhhCC-CCHHHHHHHHHHHHHhcCCCch-h
Q 014945 116 VPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVID--HGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPK-C 191 (415)
Q Consensus 116 i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~--~g~i~~L~~ll~~-~~~~v~~~a~~~L~nl~~~~~~-~ 191 (415)
-..+++++++.++..++..++..+.-...+-.-..+.+.. ......+..++.. +.-+.+...+.+|+.+.....+ .
T Consensus 528 Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I 607 (978)
T KOG1993|consen 528 YCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHI 607 (978)
T ss_pred HHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhh
Confidence 3567788888754778888888888777653333333332 2334444445543 3334556677777766533221 1
Q ss_pred HHHHHhcCChHHHHHHhccc-hhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCCh---hHHHHHHH----
Q 014945 192 RDLVLSNGALMPLLAQFNEH-AKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDD---EVLTDACW---- 263 (415)
Q Consensus 192 ~~~~~~~g~i~~L~~~l~~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~---~v~~~a~~---- 263 (415)
+....+ ++..+-.+-..+ ..+-++...+.++.|+...-.........-++|.+-....-+.+ -..+++..
T Consensus 608 ~P~~~~--ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~~fL~pVIel~~D~~sP~hv~L~EDgmeLW~~ 685 (978)
T KOG1993|consen 608 APYAST--IVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEFYPFLYPVIELSTDPSSPEHVYLLEDGMELWLT 685 (978)
T ss_pred hHHHHH--HHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHhcCCCCCceeehhhhHHHHHHH
Confidence 111111 122222222223 34445666778888888765444444444445554443332222 13334332
Q ss_pred HHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhc-CChHHHHHHHHCCChHHHHHHhcCCCccch
Q 014945 264 ALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT-GDDMQTQCIINHQALPCLLDLLTQNYKKSI 342 (415)
Q Consensus 264 ~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~-~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v 342 (415)
.+.|.-.-.++ ++ +++|.+..++....+. ...++.++....- .+....+ -...|+.+.+..++.+- ..+-
T Consensus 686 ~L~n~~~l~p~----ll--~L~p~l~~~iE~ste~-L~t~l~Ii~sYilLd~~~fl~-~y~~~i~k~~~~~l~dv-r~eg 756 (978)
T KOG1993|consen 686 TLMNSQKLTPE----LL--LLFPHLLYIIEQSTEN-LPTVLMIISSYILLDNTVFLN-DYAFGIFKKLNDLLDDV-RNEG 756 (978)
T ss_pred HHhcccccCHH----HH--HHHHHHHHHHHhhhhh-HHHHHHHHHHHHhhccHHHHH-HHHHHHHHHHHHHHHHh-hHHH
Confidence 33343222222 22 4577777777544433 3334444443332 2222111 12236777777777655 4444
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhc--cCCHHHHHHHHHHHHHHhCC
Q 014945 343 KKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL--NAEFEIKKEAAWAISNATSG 398 (415)
Q Consensus 343 ~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~--~~~~~v~~~a~~aL~nl~~~ 398 (415)
....+.++..+...++ ........++++.+..-+- .+.|.+-..-+..++.+...
T Consensus 757 l~avLkiveili~t~~-il~~~~~~~~L~~lf~~I~~~~~yP~~~~~yl~vvaRi~l~ 813 (978)
T KOG1993|consen 757 LQAVLKIVEILIKTNP-ILGSLLFSPLLSRLFLSIAENDKYPYVMGEYLLVVARISLR 813 (978)
T ss_pred HHHHHHHHHHHHhhhH-HHHhhhcchhhHHHHHHHHhCCCCchhHHHHHHHHHHHHhc
Confidence 4455555555555444 4556666778887776553 35577777777777777665
No 256
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=92.62 E-value=1.4 Score=36.99 Aligned_cols=137 Identities=16% Similarity=0.216 Sum_probs=89.9
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCC-----CChhhHHHHHHHHHHhhcCCh-HHHHHHHHCCChHHHH
Q 014945 258 LTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-----PSPSVLIPALRTVGNIVTGDD-MQTQCIINHQALPCLL 331 (415)
Q Consensus 258 ~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~-----~~~~v~~~a~~~l~nl~~~~~-~~~~~~~~~~~l~~L~ 331 (415)
..+++..+..++.+++.. ..++++.+--.+..+|.. .-+.++..+++++|.+....+ .....+....++|.++
T Consensus 117 vcnaL~lLQclaShPetk-~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcL 195 (315)
T COG5209 117 VCNALNLLQCLASHPETK-KVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCL 195 (315)
T ss_pred HHHHHHHHHHHhcCcchh-eeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHH
Confidence 345666666666665543 557777665556666532 235688999999999998665 4455666779999999
Q ss_pred HHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHH--------cCCHHHHHHHh-ccCCHHHHHHHHHHHHHHhC
Q 014945 332 DLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE--------AGIIGPLVNLL-LNAEFEIKKEAAWAISNATS 397 (415)
Q Consensus 332 ~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~--------~~~i~~L~~~l-~~~~~~v~~~a~~aL~nl~~ 397 (415)
+++..+ +.--+--|++++..+..++ ...++++. +.++..++.-+ +.+..++.+.|+.+-..++.
T Consensus 196 rIme~g-SElSktvaifI~qkil~dD-vGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd 268 (315)
T COG5209 196 RIMELG-SELSKTVAIFIFQKILGDD-VGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSD 268 (315)
T ss_pred HHHHhh-hHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecC
Confidence 999988 7766777778887776532 22333332 22344444433 34677888888887776664
No 257
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=92.47 E-value=5.9 Score=36.81 Aligned_cols=232 Identities=16% Similarity=0.163 Sum_probs=119.3
Q ss_pred hHHHHHhhCC-CCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCC-CCCch
Q 014945 159 VPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLF 236 (415)
Q Consensus 159 i~~L~~ll~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~-~~~~~ 236 (415)
+..++.-+.+ ....+|..++--|+.-+.+. .++..+..+|....++..+....+..+...++.++..+...+ .....
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~~~-~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l 101 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCADP-QFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHL 101 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhCCH-HHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhh
Confidence 4555555553 44568888888888777654 589999999999999999955544445555555555555443 33333
Q ss_pred hhhhchHHHHHHhhcCC-ChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhc---------CCCChhhHHHHHHH
Q 014945 237 EQTRPALPALERLIHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL---------RHPSPSVLIPALRT 306 (415)
Q Consensus 237 ~~~~~~l~~l~~lL~~~-d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL---------~~~~~~v~~~a~~~ 306 (415)
.........++.++.-. ..++..... .... ....... .+....+...+ .+....-+..|+.+
T Consensus 102 ~~~~~~~~ll~~Ll~~~~~~~~~~~~~------~~~~-~~lsk~~-~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~ 173 (361)
T PF07814_consen 102 LLDRDSLRLLLKLLKVDKSLDVPSDSD------SSRK-KNLSKVQ-QKSRSLCKELLSSGSSWKSPKPPELSPQTLALLA 173 (361)
T ss_pred hhchhHHHHHHHHhccccccccccchh------hhhh-hhhhHHH-HHHHHHHHHHHhccccccccCCcccccccHHHHH
Confidence 22344555556666511 000000000 0000 0000000 01112122222 01223445566666
Q ss_pred HHHhhc--------------CChHHHHHHHHCCChHHHHHHhcC----C------Ccc-----chHHHHHHHHHHHhcCC
Q 014945 307 VGNIVT--------------GDDMQTQCIINHQALPCLLDLLTQ----N------YKK-----SIKKEACWTISNITAGN 357 (415)
Q Consensus 307 l~nl~~--------------~~~~~~~~~~~~~~l~~L~~ll~~----~------~~~-----~v~~~a~~~l~nl~~~~ 357 (415)
+-.++. ..+...+.+.+.|+++.++..+.+ . .++ ..-..+..+|-|.+..+
T Consensus 174 le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~ 253 (361)
T PF07814_consen 174 LESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLS 253 (361)
T ss_pred HHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcC
Confidence 666631 011234455667889999988752 1 011 12244566666777655
Q ss_pred HHHHHHHHH--cCCHHHHHHH-hc---cCCHHHHHHHHHHHHHHhCCC
Q 014945 358 VNQIQAIIE--AGIIGPLVNL-LL---NAEFEIKKEAAWAISNATSGG 399 (415)
Q Consensus 358 ~~~~~~l~~--~~~i~~L~~~-l~---~~~~~v~~~a~~aL~nl~~~~ 399 (415)
+++..+++. .+.++.+... +. ....+....++..+.|++.+.
T Consensus 254 ~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n 301 (361)
T PF07814_consen 254 EENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNN 301 (361)
T ss_pred ccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCC
Confidence 555555553 2333333322 22 233445677888888888764
No 258
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=92.43 E-value=19 Score=39.11 Aligned_cols=113 Identities=17% Similarity=0.200 Sum_probs=75.3
Q ss_pred cCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHH
Q 014945 282 AGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQI 361 (415)
Q Consensus 282 ~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~ 361 (415)
.|++|.|-.-|.+++..+|..|...+|.+....+.+.. --........+.-+.+. +..||.++.....++...+++..
T Consensus 258 ~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~-~~~~~~~~~fl~r~~D~-~~~vR~~~v~~~~~~l~~~~~~~ 335 (1266)
T KOG1525|consen 258 LAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLS-ETYDDLWSAFLGRFNDI-SVEVRMECVESIKQCLLNNPSIA 335 (1266)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhc-ccchHHHHHHHHHhccC-ChhhhhhHHHHhHHHHhcCchhh
Confidence 37888888889999999999999999999986653322 00113444455555666 77888888877777766443322
Q ss_pred HHH-----------------------------------HHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhC
Q 014945 362 QAI-----------------------------------IEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 397 (415)
Q Consensus 362 ~~l-----------------------------------~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~ 397 (415)
... +.. ++..+-+.+.+....||+.|...|..+..
T Consensus 336 ~~~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk 405 (1266)
T KOG1525|consen 336 KASTILLALRERDLDEDVRVRTQVVIVACDVMKFKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYK 405 (1266)
T ss_pred hHHHHHHHHHhhcCChhhhheeeEEEEEeehhHhhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 111 111 33344445566788999999998887765
No 259
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=92.28 E-value=11 Score=36.24 Aligned_cols=158 Identities=13% Similarity=0.129 Sum_probs=112.7
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCC---ChHHHHHHHHHHHHHhCCCch
Q 014945 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDD---FPQLQFEAAWALTNIASGTSE 148 (415)
Q Consensus 72 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~---~~~i~~~a~~~L~~l~~~~~~ 148 (415)
....+.+.+.+++...+..|+..+..+ +.+ .....+++...++..|.+++.+.. +.++....+.++..+....--
T Consensus 84 ~a~~i~e~l~~~~~~~~~~a~k~l~sl-s~d-~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvv 161 (713)
T KOG2999|consen 84 YAKRIMEILTEGNNISKMEALKELDSL-SLD-PTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVV 161 (713)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHhhc-ccc-HHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhcee
Confidence 346788889999998998888888887 332 566788999889999999999865 245666677777666654332
Q ss_pred hhHHHHhCCChHHHHHhhC--CCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHH
Q 014945 149 NTRVVIDHGAVPIFVRLLS--SPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSN 226 (415)
Q Consensus 149 ~~~~~~~~g~i~~L~~ll~--~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~ 226 (415)
..+.+.. .++.....+.. ..+..+-..|+..|-++...++..++.+.+.--+..|+..+ +..+..++..|...+..
T Consensus 162 sW~~~~~-~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hl-q~~n~~i~~~aial~na 239 (713)
T KOG2999|consen 162 SWESVSN-DFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHL-QVSNQRIQTCAIALLNA 239 (713)
T ss_pred eeeeccc-HHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHH-HhcchHHHHHHHHHHHH
Confidence 2222221 22333333332 24566778899999999988887888888888899999999 77777788778777777
Q ss_pred hhhCCCC
Q 014945 227 FCRGKPQ 233 (415)
Q Consensus 227 l~~~~~~ 233 (415)
+....+.
T Consensus 240 l~~~a~~ 246 (713)
T KOG2999|consen 240 LFRKAPD 246 (713)
T ss_pred HHhhCCh
Confidence 7766543
No 260
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=92.23 E-value=1.6 Score=49.75 Aligned_cols=269 Identities=14% Similarity=0.155 Sum_probs=139.3
Q ss_pred hcCCCHHHHHHHHHHHHHHhccCCC--CchhHHH--hcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHh
Q 014945 80 VWSDDRNIQLDATTQFRKLLSIERS--PPINEVI--QSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVID 155 (415)
Q Consensus 80 l~~~~~~~~~~a~~~l~~l~~~~~~--~~~~~~~--~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~ 155 (415)
+...|++.+..+...++.++..... ......+ ...++..+..+-....++.++......+. ..+-.....
T Consensus 490 ~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~------~~~~~~laQ 563 (2341)
T KOG0891|consen 490 LEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIADTDPDIRIRVLSSLN------ERFDAQLAQ 563 (2341)
T ss_pred HhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccCCCcchhhhHHhhhc------cchhhhhcC
Confidence 3456677777776666655432211 0000001 11223333333222222555554444443 122222334
Q ss_pred CCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCc
Q 014945 156 HGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPL 235 (415)
Q Consensus 156 ~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~ 235 (415)
.+.+..+...+.++.-.+++.+...+++++..+|...-..+....+..+..+. .+...-+......-+..+....+.-.
T Consensus 564 ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~-~sg~~r~~~~~a~~~~~~i~~~~~~i 642 (2341)
T KOG0891|consen 564 PDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELE-FSGMARTKEESAKLLCELIISSPVLI 642 (2341)
T ss_pred chhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhh-hcchHHhHHHHHHHhhHHHHHHHHHH
Confidence 45566666677777888999999999999987774322222111111111111 11111011111111111111101111
Q ss_pred hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCC-CChhhHHHHHHHHHHhhcCC
Q 014945 236 FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-PSPSVLIPALRTVGNIVTGD 314 (415)
Q Consensus 236 ~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~-~~~~v~~~a~~~l~nl~~~~ 314 (415)
...+...+..++..+.+.+..+...+..+++.||.-........++ ..++.+.+.+.. .+..-+..++++++++....
T Consensus 643 ~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~-~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~~ 721 (2341)
T KOG0891|consen 643 SPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVD-ELFSLIIKMLQDQSSLGKRLAALKALGQLESST 721 (2341)
T ss_pred HhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccc-hHHHHHHHHHHHhhhhhchhHHHHHhhhhhccc
Confidence 2233445566777778888888888899999998655533333444 445555555543 34556788999999999765
Q ss_pred hHHHHHHHH-CCChHHHHHHhcCCCccchHHHHHHHHHHHhcC
Q 014945 315 DMQTQCIIN-HQALPCLLDLLTQNYKKSIKKEACWTISNITAG 356 (415)
Q Consensus 315 ~~~~~~~~~-~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~ 356 (415)
........+ .-++..+...+.......++.++...++++...
T Consensus 722 ~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~~ 764 (2341)
T KOG0891|consen 722 GYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLGAL 764 (2341)
T ss_pred ceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhccc
Confidence 432222222 145666666666665677888888888877664
No 261
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=92.20 E-value=5.7 Score=40.20 Aligned_cols=158 Identities=16% Similarity=0.211 Sum_probs=109.9
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhh
Q 014945 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 150 (415)
Q Consensus 71 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~ 150 (415)
..|..|+..|.|+|......+-..+...+...+ ++ + ++..|+++.-+.+ -..|+.+|..+-. |..+
T Consensus 4 ~~~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~~-~~---~----l~~~l~~y~~~t~----s~~~~~il~~~~~--P~~K 69 (668)
T PF04388_consen 4 ASITELLSLLESNDLSVLEEIKALLQELLNSDR-EP---W----LVNGLVDYYLSTN----SQRALEILVGVQE--PHDK 69 (668)
T ss_pred ccHHHHHHHhcCCchhhHHHHHHHHHHHhhccc-hH---H----HHHHHHHHHhhcC----cHHHHHHHHhcCC--ccHH
Confidence 357899999999999888888888887765431 11 1 3666777655444 1345666665432 4333
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhC
Q 014945 151 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 230 (415)
Q Consensus 151 ~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~ 230 (415)
. .+..|-.++.. +.-|-.++..|+.+....|..-..+.+...+..|+.+|..+.+..+...|+.+|.-|.-.
T Consensus 70 ~------~~~~l~~~~~~--~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ 141 (668)
T PF04388_consen 70 H------LFDKLNDYFVK--PSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPH 141 (668)
T ss_pred H------HHHHHHHHHcC--chhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhcc
Confidence 2 24455566654 456778999999999887777788889999999999998888999999999999888865
Q ss_pred CCCCchhhhhchHHHHHHhh
Q 014945 231 KPQPLFEQTRPALPALERLI 250 (415)
Q Consensus 231 ~~~~~~~~~~~~l~~l~~lL 250 (415)
.+.........++.+...++
T Consensus 142 ip~~l~~~L~~Lf~If~Rl~ 161 (668)
T PF04388_consen 142 IPSSLGPHLPDLFNIFGRLL 161 (668)
T ss_pred ccchhhHHHHHHHHHHHHHH
Confidence 55444444445555555554
No 262
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=92.14 E-value=9.4 Score=35.02 Aligned_cols=112 Identities=20% Similarity=0.205 Sum_probs=82.9
Q ss_pred HHHHHHhcCCCChhhHHHHHHHHHHhhc-CChHHHHHHHHC-CC-hHHHHHHhcCCC----c--------cchHHHHHHH
Q 014945 285 CPRLVELLRHPSPSVLIPALRTVGNIVT-GDDMQTQCIINH-QA-LPCLLDLLTQNY----K--------KSIKKEACWT 349 (415)
Q Consensus 285 i~~L~~lL~~~~~~v~~~a~~~l~nl~~-~~~~~~~~~~~~-~~-l~~L~~ll~~~~----~--------~~v~~~a~~~ 349 (415)
+..+...|+...+.+..++++.|..++. ........++.. ++ .+.+.+++.... + +.+|......
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 7888889998888899999999999999 555666666654 32 345666663321 1 2788877755
Q ss_pred HHH-HhcCCHHHHHHHHH-cCCHHHHHHHhccCCHHHHHHHHHHHHHHh
Q 014945 350 ISN-ITAGNVNQIQAIIE-AGIIGPLVNLLLNAEFEIKKEAAWAISNAT 396 (415)
Q Consensus 350 l~n-l~~~~~~~~~~l~~-~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~ 396 (415)
+.. +..+++.....+++ .+.+..+.+-|..+++++....+.+|..-.
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~V 186 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKV 186 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHh
Confidence 554 44578888878775 667889999999888999999998888644
No 263
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=91.89 E-value=13 Score=35.94 Aligned_cols=156 Identities=13% Similarity=0.138 Sum_probs=110.6
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccch---hHhHHHHHHHHHHHhhhCCCCCc
Q 014945 159 VPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA---KLSMLRNATWTLSNFCRGKPQPL 235 (415)
Q Consensus 159 i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~---~~~~~~~a~~~l~~l~~~~~~~~ 235 (415)
...+...+.+++..-+..++..+..++.+.. +...++...++..|..++.+.. +.++....+.+++.+-...- ..
T Consensus 85 a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~-fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgv-vs 162 (713)
T KOG2999|consen 85 AKRIMEILTEGNNISKMEALKELDSLSLDPT-FAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGV-VS 162 (713)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHhhccccHH-HHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhce-ee
Confidence 3456667777776666668888888887766 5677788889999999985433 45677777777777766532 22
Q ss_pred hhhh-hchHHHHHHhh--cCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhc
Q 014945 236 FEQT-RPALPALERLI--HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT 312 (415)
Q Consensus 236 ~~~~-~~~l~~l~~lL--~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~ 312 (415)
+... ..++-....+. +-.+..+...|+..+-++.-+++...+.+.+.--++.|+..+...+..++..|+..+..+..
T Consensus 163 W~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~ 242 (713)
T KOG2999|consen 163 WESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFR 242 (713)
T ss_pred eeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence 2111 22222233332 33466788889999999988888777778888889999999999998899888888888876
Q ss_pred CChH
Q 014945 313 GDDM 316 (415)
Q Consensus 313 ~~~~ 316 (415)
..++
T Consensus 243 ~a~~ 246 (713)
T KOG2999|consen 243 KAPD 246 (713)
T ss_pred hCCh
Confidence 5543
No 264
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=91.52 E-value=7.2 Score=32.39 Aligned_cols=74 Identities=19% Similarity=0.244 Sum_probs=57.6
Q ss_pred chHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHH
Q 014945 115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDL 194 (415)
Q Consensus 115 ~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 194 (415)
.++.++++..+++ ..++..|+.++.-+....--+.. ..+|.++.+..++++.++..|...+..+....+..-+.
T Consensus 9 yl~~Il~~~~~~~-~~vr~~Al~~l~~il~qGLvnP~-----~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~ 82 (187)
T PF12830_consen 9 YLKNILELCLSSD-DSVRLAALQVLELILRQGLVNPK-----QCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVES 82 (187)
T ss_pred HHHHHHHHHhCCC-HHHHHHHHHHHHHHHhcCCCChH-----HHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHH
Confidence 4677778778888 89999999999887764322222 25899999999999999999999999998766544333
No 265
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=91.43 E-value=1.3 Score=37.21 Aligned_cols=97 Identities=9% Similarity=0.076 Sum_probs=72.8
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCC----CccchHHHHHHHHHHHhc-CCHHHHHHHHHcCCHHHHHH
Q 014945 301 IPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN----YKKSIKKEACWTISNITA-GNVNQIQAIIEAGIIGPLVN 375 (415)
Q Consensus 301 ~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~----~~~~v~~~a~~~l~nl~~-~~~~~~~~l~~~~~i~~L~~ 375 (415)
..|+..+.-+++. ++....++++.+--.+..++... ....+|-.+..+++.+.. +++..+..+....++|.+++
T Consensus 118 cnaL~lLQclaSh-Petk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLr 196 (315)
T COG5209 118 CNALNLLQCLASH-PETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLR 196 (315)
T ss_pred HHHHHHHHHHhcC-cchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHH
Confidence 3455556555554 55666667776655555666332 245688999999999998 68888888889999999999
Q ss_pred HhccCCHHHHHHHHHHHHHHhCC
Q 014945 376 LLLNAEFEIKKEAAWAISNATSG 398 (415)
Q Consensus 376 ~l~~~~~~v~~~a~~aL~nl~~~ 398 (415)
+++.++.--+..|+..+..+..+
T Consensus 197 Ime~gSElSktvaifI~qkil~d 219 (315)
T COG5209 197 IMELGSELSKTVAIFIFQKILGD 219 (315)
T ss_pred HHHhhhHHHHHHHHHHHHHHhcc
Confidence 99999888888888888888744
No 266
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=91.40 E-value=4 Score=41.42 Aligned_cols=128 Identities=18% Similarity=0.163 Sum_probs=79.7
Q ss_pred HHHHHHcCcHHHHHHhcCCC-C-------hhhHHHHHHHHHHhhcCChHHHHHHHH-----C---CChHHHHHHhcCC--
Q 014945 276 IQAVIEAGVCPRLVELLRHP-S-------PSVLIPALRTVGNIVTGDDMQTQCIIN-----H---QALPCLLDLLTQN-- 337 (415)
Q Consensus 276 ~~~~~~~~~i~~L~~lL~~~-~-------~~v~~~a~~~l~nl~~~~~~~~~~~~~-----~---~~l~~L~~ll~~~-- 337 (415)
.+.+.+.+.+..++++...+ + .+....|+.+|.-+..-++.+.+ +.. . .++..++..-.-.
T Consensus 594 aenflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP~iq~~-La~~~~~n~~aydGiaIiL~~a~g~~~ 672 (1516)
T KOG1832|consen 594 AENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSIPDIQKA-LAHATLSNNRAYDGIAIILDAANGSNS 672 (1516)
T ss_pred HHHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEecchHHHH-HHHHHhhcccccCceEEEeeccccccc
Confidence 34567777888888876422 2 34556677777666555544333 221 1 1333333322111
Q ss_pred -CccchHHHHHHHHHHHhcCCHHHH-----------------------------------HHHHHcCCHHHHHHHhccCC
Q 014945 338 -YKKSIKKEACWTISNITAGNVNQI-----------------------------------QAIIEAGIIGPLVNLLLNAE 381 (415)
Q Consensus 338 -~~~~v~~~a~~~l~nl~~~~~~~~-----------------------------------~~l~~~~~i~~L~~~l~~~~ 381 (415)
.++++++.|..++.|+....|+.+ ..+..+++|..|+++|....
T Consensus 673 i~Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k~ 752 (1516)
T KOG1832|consen 673 IVDPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQYKN 752 (1516)
T ss_pred ccCHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhccC
Confidence 267889999999888876432211 12234678999999998744
Q ss_pred H-----HHHHHHHHHHHHHhCCCCHHHH
Q 014945 382 F-----EIKKEAAWAISNATSGGSNEQI 404 (415)
Q Consensus 382 ~-----~v~~~a~~aL~nl~~~~~~~~~ 404 (415)
| .+|.-||.+|.-++.+.+-.||
T Consensus 753 P~t~aD~IRalAc~~L~GLaR~~tVrQI 780 (1516)
T KOG1832|consen 753 PPTTADCIRALACRVLLGLARDDTVRQI 780 (1516)
T ss_pred CCCcHHHHHHHHHHHHhccccCcHHHHH
Confidence 3 5899999999999998776665
No 267
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=91.10 E-value=10 Score=33.37 Aligned_cols=177 Identities=18% Similarity=0.160 Sum_probs=99.0
Q ss_pred CchHHHHHhhcCCCChHHHHHHHHHHHHHhCCC-------chhhHHHHhCCChHHHHHhhCCCC----HHHHHHHHHHHH
Q 014945 114 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGT-------SENTRVVIDHGAVPIFVRLLSSPT----DDVREQAVWALG 182 (415)
Q Consensus 114 g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~-------~~~~~~~~~~g~i~~L~~ll~~~~----~~v~~~a~~~L~ 182 (415)
|+-+.+++=+.++. ....++..|..++... .+.+-.+.=.+.+|.++.-+++++ ......++..|+
T Consensus 64 Glq~Ll~KGL~Ss~---t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La 140 (262)
T PF14225_consen 64 GLQPLLLKGLRSSS---TYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALA 140 (262)
T ss_pred hHHHHHhCccCCCC---cHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHH
Confidence 34444455555543 3444555665555421 212222222345777777777766 234456667888
Q ss_pred HhcCCCchhHHHHHhcCChHHHHHHhccch---hHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHH
Q 014945 183 NVAGDSPKCRDLVLSNGALMPLLAQFNEHA---KLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLT 259 (415)
Q Consensus 183 nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~---~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~ 259 (415)
.+|.... .+.+..++....+.. ..+....++..+..-.. |. .....+-.+..+|.+..+.++.
T Consensus 141 ~~a~~~~--------~~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~--P~----~~~~~l~~Ll~lL~n~~~w~~~ 206 (262)
T PF14225_consen 141 QVAEAQG--------LPNLARILSSYAKGRFRDKDDFLSQVVSYLREAFF--PD----HEFQILTFLLGLLENGPPWLRR 206 (262)
T ss_pred HHHHhCC--------CccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhC--ch----hHHHHHHHHHHHHhCCcHHHHH
Confidence 8874322 123444555443332 33344444444333221 21 2245566788889888899999
Q ss_pred HHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhc
Q 014945 260 DACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT 312 (415)
Q Consensus 260 ~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~ 312 (415)
.++..|..+....+-... ...+++..+.++|..+.+ ..|+.++-++..
T Consensus 207 ~~L~iL~~ll~~~d~~~~--~~~dlispllrlL~t~~~---~eAL~VLd~~v~ 254 (262)
T PF14225_consen 207 KTLQILKVLLPHVDMRSP--HGADLISPLLRLLQTDLW---MEALEVLDEIVT 254 (262)
T ss_pred HHHHHHHHHhccccCCCC--cchHHHHHHHHHhCCccH---HHHHHHHHHHHh
Confidence 999999998766543322 455688899999977653 455555555443
No 268
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=90.80 E-value=7.6 Score=34.34 Aligned_cols=146 Identities=19% Similarity=0.171 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHHhCCCchhhHHHHhCC--ChHHHHHhhC----CCCHHHHHHHHHHHHHhcCCCchhHHHHHhcC--Ch
Q 014945 130 QLQFEAAWALTNIASGTSENTRVVIDHG--AVPIFVRLLS----SPTDDVREQAVWALGNVAGDSPKCRDLVLSNG--AL 201 (415)
Q Consensus 130 ~i~~~a~~~L~~l~~~~~~~~~~~~~~g--~i~~L~~ll~----~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g--~i 201 (415)
+-+.-++..++-++.+ +.....+...+ +...+..++. +..+..+-.++++++|+....+ .+..+.... .+
T Consensus 78 ~~~fP~lDLlRl~~l~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~-~~~~~~~~~~~~i 155 (268)
T PF08324_consen 78 ESRFPALDLLRLAALH-PPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPP-GRQLLLSHFDSSI 155 (268)
T ss_dssp CC-HHHHHHHHHHCCC-HCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCC-CHHHHHCTHHTCH
T ss_pred ccchhHHhHHHHHHhC-ccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCc-cHHHHHhcccchH
Confidence 4466667777665553 44444443322 2344444332 2567788899999999988766 455555432 23
Q ss_pred HHHHHHhccc---hhHhHHHHHHHHHHHhhhCC--CCCchhhhhchHHHHHHhh-cC-CChhHHHHHHHHHHHhccCChH
Q 014945 202 MPLLAQFNEH---AKLSMLRNATWTLSNFCRGK--PQPLFEQTRPALPALERLI-HS-NDDEVLTDACWALSYLSDGTND 274 (415)
Q Consensus 202 ~~L~~~l~~~---~~~~~~~~a~~~l~~l~~~~--~~~~~~~~~~~l~~l~~lL-~~-~d~~v~~~a~~~l~~l~~~~~~ 274 (415)
...+..+... .+..++..++..+.|++... ..........++..+.+.+ .. .|+++...++-+++++...++.
T Consensus 156 ~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~ 235 (268)
T PF08324_consen 156 LELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTLLSSSDS 235 (268)
T ss_dssp HHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHH
T ss_pred HHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhccChh
Confidence 3333333222 27788889999999998554 1112223344566666643 33 5899999999999999966655
Q ss_pred HHH
Q 014945 275 KIQ 277 (415)
Q Consensus 275 ~~~ 277 (415)
...
T Consensus 236 ~~~ 238 (268)
T PF08324_consen 236 AKQ 238 (268)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 269
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=90.61 E-value=2.9 Score=37.39 Aligned_cols=138 Identities=12% Similarity=0.173 Sum_probs=77.2
Q ss_pred chHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhh-HHHHhCCChHHH----HHhhC--------CCCHHHHHHHHHHH
Q 014945 115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT-RVVIDHGAVPIF----VRLLS--------SPTDDVREQAVWAL 181 (415)
Q Consensus 115 ~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~-~~~~~~g~i~~L----~~ll~--------~~~~~v~~~a~~~L 181 (415)
++|.++.++++.+ +.++..++.+|..+....+... ..+...|..+.+ ..++. .+...+...+.-++
T Consensus 120 iiP~iL~llDD~~-~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L 198 (282)
T PF10521_consen 120 IIPPILNLLDDYS-PEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL 198 (282)
T ss_pred HHhhHHHHhcCCC-HHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence 6899999999998 9999999999999998544333 235556654433 33333 23456777777788
Q ss_pred HHhcCC----CchhHHHHHhcCChHHHHHHhccc---hhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCC
Q 014945 182 GNVAGD----SPKCRDLVLSNGALMPLLAQFNEH---AKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSN 253 (415)
Q Consensus 182 ~nl~~~----~~~~~~~~~~~g~i~~L~~~l~~~---~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~ 253 (415)
..++.- +...+......-.-+.++.-+... ..+.+....+..+..+...-..........++|.+.+.+.++
T Consensus 199 ~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~~~l~np 277 (282)
T PF10521_consen 199 LSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLSQILENP 277 (282)
T ss_pred HHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCC
Confidence 777421 111111111111111122222122 235666666666655555433333344456666666666554
No 270
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.23 E-value=31 Score=38.62 Aligned_cols=231 Identities=13% Similarity=0.107 Sum_probs=128.6
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCC-CCCchh
Q 014945 159 VPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFE 237 (415)
Q Consensus 159 i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~-~~~~~~ 237 (415)
+..++..+..+++..+..+..+++.++...+.. .+ -.+..+.++.-+.+..++-.+.--..++..+-++. ......
T Consensus 878 ~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~--~f-~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~q 954 (2067)
T KOG1822|consen 878 LTLIVNSLINPNPKLRCAAAEALARLAQVVGSA--PF-VASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQ 954 (2067)
T ss_pred HHHHhhhhccCChHHHHHHHHHHHHHHHhcccc--ch-HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCch
Confidence 445555666788888888888888887544321 11 11245566666755566666666666677776665 333334
Q ss_pred hhhchHHHHHHhhcCC-ChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCCh---hhHH------------
Q 014945 238 QTRPALPALERLIHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSP---SVLI------------ 301 (415)
Q Consensus 238 ~~~~~l~~l~~lL~~~-d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~---~v~~------------ 301 (415)
.....+..+..+-+++ ++.|+..++.++..+...........+. -.+..+..+|-+..+ ++..
T Consensus 955 hl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve-~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~~ 1033 (2067)
T KOG1822|consen 955 HLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVE-PTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDDE 1033 (2067)
T ss_pred hcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHH-HHHHHHHHHcCCCCcchhhhhhhhccccccchhH
Confidence 4455667777777665 5699999999999988655443333332 233444444432211 1221
Q ss_pred -HHHHHHHHhhcCChH--HHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhc
Q 014945 302 -PALRTVGNIVTGDDM--QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL 378 (415)
Q Consensus 302 -~a~~~l~nl~~~~~~--~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~ 378 (415)
....++|.=..++.. .+..+ ..-.+-...-++.++ ++-+..++..++-++.--.+.+.. . .-+++.|..++.
T Consensus 1034 ~alittlgpeL~~N~~~d~t~~~-rts~la~~allls~~-d~lnqa~ai~clqqlhlFapr~~n--~-~~lV~~L~~~l~ 1108 (2067)
T KOG1822|consen 1034 DALITTLGPELGPNGDKDSTSTL-RTSCLAACALLLSHS-DPLNQAAAIKCLQQLHLFAPRHVN--L-DSLVLQLCSLLS 1108 (2067)
T ss_pred HHHHHhcccccCCCCcccchhHH-HHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHhhcchhcc--H-HHHHHHHHHHhc
Confidence 122223322222221 11111 111222233344555 888999999999877653332110 1 115677777777
Q ss_pred cCCHHHHHHHHHHHHHHhCC
Q 014945 379 NAEFEIKKEAAWAISNATSG 398 (415)
Q Consensus 379 ~~~~~v~~~a~~aL~nl~~~ 398 (415)
+...-.|.....++..+...
T Consensus 1109 s~~~i~r~~~~~clrql~~R 1128 (2067)
T KOG1822|consen 1109 SSYLILRRASFSCLRQLVQR 1128 (2067)
T ss_pred chhhhhhhhHHhhhhHHhHH
Confidence 66666666666666666654
No 271
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=89.95 E-value=21 Score=35.16 Aligned_cols=114 Identities=12% Similarity=0.067 Sum_probs=67.4
Q ss_pred HHHHHHhcCCCC--hhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhc---CCHH
Q 014945 285 CPRLVELLRHPS--PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA---GNVN 359 (415)
Q Consensus 285 i~~L~~lL~~~~--~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~---~~~~ 359 (415)
+..+...+...+ +.-....||++|.++..-.+..+.-+--++++.|+.+..-. .. +..-+-+-+|+.- ..|.
T Consensus 483 i~Klarq~dg~EWsw~nlNtLcWAIGSISGamsE~~EkrF~VnviKdLL~LcemK-rg--KdnKAVvASnIMyvvGQYpR 559 (1053)
T COG5101 483 IGKLARQLDGKEWSWNNLNTLCWAIGSISGAMSEVNEKRFFVNVIKDLLALCEMK-RG--KDNKAVVASNIMYVVGQYPR 559 (1053)
T ss_pred HHHHHHHhcCCccchhhHhHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHh-hc--CCcchhhecceeeeeccchH
Confidence 456666676554 45567799999999865443332222224566666655322 11 1111222333332 2222
Q ss_pred HHH---HHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCHH
Q 014945 360 QIQ---AIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNE 402 (415)
Q Consensus 360 ~~~---~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~ 402 (415)
... .++ .-++..|.++++..+..++..||.....++..++..
T Consensus 560 FLkahw~FL-kTVv~KLFEFMhE~HEGvqDMACDtFiKIvqKC~~h 604 (1053)
T COG5101 560 FLKAHWSFL-KTVVKKLFEFMHEDHEGVQDMACDTFIKIVQKCPVH 604 (1053)
T ss_pred HHHHHHHHH-HHHHHHHHHHHhhhhhhHHhhhHHHHHHHHHhCcHH
Confidence 221 112 236889999999999999999999999999777644
No 272
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=89.70 E-value=1.7 Score=44.33 Aligned_cols=131 Identities=14% Similarity=0.138 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhh
Q 014945 171 DDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLI 250 (415)
Q Consensus 171 ~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL 250 (415)
+.++.+++-+|+++|--..... ...+|.|++-|..++...++.+..-++.-+|... .......+|.+...|
T Consensus 945 ~~vra~~vvTlakmcLah~~La-----Kr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~Y----Tam~d~YiP~I~~~L 1015 (1529)
T KOG0413|consen 945 DKVRAVGVVTLAKMCLAHDRLA-----KRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSY----TAMTDRYIPMIAASL 1015 (1529)
T ss_pred hHHHHHHHHHHHHHHhhhhHHH-----HHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHH----HHHHHHhhHHHHHHh
Confidence 5678888999999985544322 2267889999988888889999988888888652 134467899999999
Q ss_pred cCCChhHHHHHHHHHHHhccCChHHHHHHHHcC-cHHHHHHhcCCCChhhHHHHHHHHHHhhcCCh
Q 014945 251 HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAG-VCPRLVELLRHPSPSVLIPALRTVGNIVTGDD 315 (415)
Q Consensus 251 ~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~-~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~ 315 (415)
.++++-|+..++-.|.+|.+..-.. -.| ++-+++.-|-+.+++++.-|=.+++.+.....
T Consensus 1016 ~Dp~~iVRrqt~ilL~rLLq~~~vK-----w~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~~~ 1076 (1529)
T KOG0413|consen 1016 CDPSVIVRRQTIILLARLLQFGIVK-----WNGELFIRFMLALLDANEDIRNDAKFYISEVLQSEE 1076 (1529)
T ss_pred cCchHHHHHHHHHHHHHHHhhhhhh-----cchhhHHHHHHHHcccCHHHHHHHHHHHHHHHhhcC
Confidence 9999999999999999997543211 112 23333334446778899999999999886543
No 273
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=89.19 E-value=18 Score=33.22 Aligned_cols=156 Identities=17% Similarity=0.114 Sum_probs=104.2
Q ss_pred hHHHHHhhcCCCChHHHHHHHHHHHHHhC-CCchhhHHHHhC--CChHHHHHhhCC-----CC--------HHHHHHHHH
Q 014945 116 VPRFIEFLSRDDFPQLQFEAAWALTNIAS-GTSENTRVVIDH--GAVPIFVRLLSS-----PT--------DDVREQAVW 179 (415)
Q Consensus 116 i~~L~~ll~~~~~~~i~~~a~~~L~~l~~-~~~~~~~~~~~~--g~i~~L~~ll~~-----~~--------~~v~~~a~~ 179 (415)
++.+...|++.. ..+...++..|..++. ++......+... --.+.+.+++.- .. +.+|...+.
T Consensus 58 ~k~lyr~L~~~~-~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~ 136 (330)
T PF11707_consen 58 LKLLYRSLSSSK-PSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIR 136 (330)
T ss_pred HHHHHHHhCcCc-HHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHH
Confidence 678888898888 8888899999999998 666666666653 224456666532 11 278888888
Q ss_pred HHHHhcC-CCchhHHHHHh-cCChHHHHHHhccchhHhHHHHHHHHHHH-hhhCCCCCc----hhhhhchHHHHHHhhcC
Q 014945 180 ALGNVAG-DSPKCRDLVLS-NGALMPLLAQFNEHAKLSMLRNATWTLSN-FCRGKPQPL----FEQTRPALPALERLIHS 252 (415)
Q Consensus 180 ~L~nl~~-~~~~~~~~~~~-~g~i~~L~~~l~~~~~~~~~~~a~~~l~~-l~~~~~~~~----~~~~~~~l~~l~~lL~~ 252 (415)
.+..+.. .++..+..+++ .+.+..+..-| ..++.++....+.++.. +.....-.. .......+..|..+...
T Consensus 137 F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l-~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~ 215 (330)
T PF11707_consen 137 FWLSFLSSGDPELKRDLLSQKKLMSALFKGL-RKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSR 215 (330)
T ss_pred HHHHHHccCCHHHHHHHHHcCchHHHHHhcc-cCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcc
Confidence 7766653 45555555554 45677777878 44677777777777774 444431111 12336678888887777
Q ss_pred CCh----hHHHHHHHHHHHhccCCh
Q 014945 253 NDD----EVLTDACWALSYLSDGTN 273 (415)
Q Consensus 253 ~d~----~v~~~a~~~l~~l~~~~~ 273 (415)
.++ .+...+-..+..+|..+.
T Consensus 216 ~~~~~~~~~~~~vh~fL~~lcT~p~ 240 (330)
T PF11707_consen 216 DGEDEKSSVADLVHEFLLALCTDPK 240 (330)
T ss_pred cCCcccchHHHHHHHHHHHHhcCCC
Confidence 766 777777777777775443
No 274
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=89.06 E-value=9.6 Score=30.90 Aligned_cols=115 Identities=16% Similarity=0.200 Sum_probs=71.2
Q ss_pred chHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhC--CChHHHHHhhCCC-CHHHHHHHHHHHHHhc---CCC
Q 014945 115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDH--GAVPIFVRLLSSP-TDDVREQAVWALGNVA---GDS 188 (415)
Q Consensus 115 ~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~--g~i~~L~~ll~~~-~~~v~~~a~~~L~nl~---~~~ 188 (415)
.+..+..+|++.+ +.-+..++..+..++..++ .+.+.+. ..+..++..|+.+ ...+.+.++.++..|. .+.
T Consensus 26 l~~ri~~LL~s~~-~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~ 102 (165)
T PF08167_consen 26 LVTRINSLLQSKS-AYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGK 102 (165)
T ss_pred HHHHHHHHhCCCC-hhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 4566788888888 7888888888877776432 3444343 3477888888874 4567888888888876 444
Q ss_pred chhHHHHHhcCChHHHHHHhccc-hhHhHHHHHHHHHHHhhhCCCC
Q 014945 189 PKCRDLVLSNGALMPLLAQFNEH-AKLSMLRNATWTLSNFCRGKPQ 233 (415)
Q Consensus 189 ~~~~~~~~~~g~i~~L~~~l~~~-~~~~~~~~a~~~l~~l~~~~~~ 233 (415)
|.....+... .++.++..+-+- .+......++.++..+....|.
T Consensus 103 p~l~Rei~tp-~l~~~i~~ll~l~~~~~~~~~~l~~L~~ll~~~pt 147 (165)
T PF08167_consen 103 PTLTREIATP-NLPKFIQSLLQLLQDSSCPETALDALATLLPHHPT 147 (165)
T ss_pred CchHHHHhhc-cHHHHHHHHHHHHhccccHHHHHHHHHHHHHHCCc
Confidence 5443343322 244443332111 1145666777777777765443
No 275
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=88.98 E-value=15 Score=32.01 Aligned_cols=127 Identities=16% Similarity=0.122 Sum_probs=67.7
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccch-hHhHHHHHHHHHHHhhhCCCCCc
Q 014945 157 GAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA-KLSMLRNATWTLSNFCRGKPQPL 235 (415)
Q Consensus 157 g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~-~~~~~~~a~~~l~~l~~~~~~~~ 235 (415)
.+++.++++++.++..+ -..+|-.....-...-..+-.|-++.|..++.+.. +.-++..|+.++..+....+...
T Consensus 73 ~A~~~li~l~~~~~~~~----~~l~GD~~tE~l~~ilasv~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~R 148 (249)
T PF06685_consen 73 RALPPLIRLFSQDDDFL----EDLFGDFITEDLPRILASVGDGDIEPLKELIEDPDADEYVRMAAISALAFLVHEGPISR 148 (249)
T ss_pred hhHHHHHHHHcCCcchH----HHHHcchhHhHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCH
Confidence 56899999997655421 11122211111000011223455677777774433 66788999999999998876655
Q ss_pred hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhcc-CChHHHHHHHHcCcHHH
Q 014945 236 FEQTRPALPALERLIHSNDDEVLTDACWALSYLSD-GTNDKIQAVIEAGVCPR 287 (415)
Q Consensus 236 ~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~-~~~~~~~~~~~~~~i~~ 287 (415)
...+.-+-..+-..+..++..+....+..+..|.. .-...++.+.+.|.++.
T Consensus 149 e~vi~~f~~ll~~~l~~~~~~~~~~Lv~~~~dL~~~EL~~~I~~~f~~~lVd~ 201 (249)
T PF06685_consen 149 EEVIQYFRELLNYFLERNPSFLWGSLVADICDLYPEELLPEIRKAFEDGLVDP 201 (249)
T ss_pred HHHHHHHHHHHHHHhccCchHHHHHHHHHHHhcCHHHhHHHHHHHHHcCCCCc
Confidence 55554444445454655544444443333333321 11233455566666554
No 276
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=88.96 E-value=1.5 Score=37.32 Aligned_cols=83 Identities=14% Similarity=0.203 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHhccCCCCchhHHHhcC-------chHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhh-HHHHhCC
Q 014945 86 NIQLDATTQFRKLLSIERSPPINEVIQSG-------VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT-RVVIDHG 157 (415)
Q Consensus 86 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~g-------~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~-~~~~~~g 157 (415)
.-|..|+++|+++.-.+ .+.+.++..+ ++..|++++....++..|+.|+-.|.+++.++.... ....+.+
T Consensus 139 SPqrlaLEaLcKLsV~e--~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~ 216 (257)
T PF12031_consen 139 SPQRLALEALCKLSVIE--NNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKP 216 (257)
T ss_pred CHHHHHHHHHHHhheec--cCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhc
Confidence 56888999999985433 3444443333 566777888876658899999999999999876655 4444568
Q ss_pred ChHHHHHhhCCCC
Q 014945 158 AVPIFVRLLSSPT 170 (415)
Q Consensus 158 ~i~~L~~ll~~~~ 170 (415)
.|..|+.++.+..
T Consensus 217 ~i~~Li~FiE~a~ 229 (257)
T PF12031_consen 217 CISHLIAFIEDAE 229 (257)
T ss_pred hHHHHHHHHHHHH
Confidence 9999999997643
No 277
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=88.91 E-value=22 Score=33.97 Aligned_cols=198 Identities=11% Similarity=0.103 Sum_probs=93.8
Q ss_pred HhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCC-CCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChH
Q 014945 196 LSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP-QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTND 274 (415)
Q Consensus 196 ~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~ 274 (415)
++...++.+..+| +.+-.+..-++...++.+.+..+ .........++|.|..---.....-.-...+.+..+....+.
T Consensus 114 ~E~~L~P~f~~IL-q~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gniPalvrLL~a~i~k~~~ 192 (435)
T PF03378_consen 114 FEEALFPPFQEIL-QQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNIPALVRLLQAYIKKDPS 192 (435)
T ss_dssp HHHHHHHHHHHHH-HTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCcCcHHHHHHHHHHhCch
Confidence 3444677788888 55555677777778887777654 233334455555544221111111112333334333322222
Q ss_pred HHHHHHHcC----cHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHH-HHHHHHCCChHHHHHHhcCCCccchHHHHHHH
Q 014945 275 KIQAVIEAG----VCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQ-TQCIINHQALPCLLDLLTQNYKKSIKKEACWT 349 (415)
Q Consensus 275 ~~~~~~~~~----~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~-~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~ 349 (415)
. +...| ++...-.++.+... -..+...|..+...-+.. .+..+. .++..++.-|+++..++..+.-+..
T Consensus 193 ~---i~~~~~l~~iLgvFQkLi~sk~~--D~~gF~LL~~iv~~~p~~~l~~yl~-~I~~lll~RLq~skT~kf~~~fv~F 266 (435)
T PF03378_consen 193 F---IVANNQLEPILGVFQKLIASKAN--DHYGFDLLESIVENLPPEALEPYLK-QIFTLLLTRLQSSKTEKFVKRFVVF 266 (435)
T ss_dssp G-------S-CHHHHHHHHHHHT-TTC--HHHHHHHHHHHHHHS-HHHHGGGHH-HHHHHHHHHHHHC--HHHHHHHHHH
T ss_pred h---hcchhhHHHHHHHHHHHHCCCCc--chHHHHHHHHHHHHCCHHHHHHHHH-HHHHHHHHHHhhCCcHHHHHHHHHH
Confidence 1 12222 23333344444432 245667777777655432 121111 3444555555544355666666666
Q ss_pred HHHHhc-CCHHHHHHHHH---cCCHHHHHHHh-----cc-CCHHHHHHHHHHHHHHhCCCC
Q 014945 350 ISNITA-GNVNQIQAIIE---AGIIGPLVNLL-----LN-AEFEIKKEAAWAISNATSGGS 400 (415)
Q Consensus 350 l~nl~~-~~~~~~~~l~~---~~~i~~L~~~l-----~~-~~~~v~~~a~~aL~nl~~~~~ 400 (415)
++.++. .+++..-..++ .|++..++.-+ .. ..+.-|+.++-+++++...++
T Consensus 267 ~~~~~~~~g~~~li~~id~IQ~glF~~il~~v~lp~~~k~~~~~erKi~~vGltkLL~es~ 327 (435)
T PF03378_consen 267 LSLFAIKYGPDFLIQTIDSIQPGLFGMILEKVWLPDLQKVSGPIERKICAVGLTKLLCESP 327 (435)
T ss_dssp HHHHHHHH-HHHHHHHHHTTSTTHHHHHHHHTHHHHGGG--SHHHHHHHHHHHHHHHHSST
T ss_pred HHHHHHHcCHHHHHHHHHHhcCCcHHHHHHHHhcCchhhcCCcchhhHHHHHHHHHHhccH
Confidence 665554 45555555554 46555555421 11 334567888888888775443
No 278
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=88.86 E-value=1.6 Score=34.31 Aligned_cols=74 Identities=12% Similarity=0.080 Sum_probs=58.7
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhC
Q 014945 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIAS 144 (415)
Q Consensus 71 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~ 144 (415)
+++..+.+.|++.++.++..|+..|..+...-+.....++...+++..|++++.....+.++..++..+...+.
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 46788889999999999999999999887654334445677888999999999854447899988888877664
No 279
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=88.33 E-value=16 Score=31.73 Aligned_cols=117 Identities=25% Similarity=0.333 Sum_probs=66.7
Q ss_pred hchHHHHHHhhcCCChh--------HHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCC--ChhhHHHHHHHHHH
Q 014945 240 RPALPALERLIHSNDDE--------VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP--SPSVLIPALRTVGN 309 (415)
Q Consensus 240 ~~~l~~l~~lL~~~d~~--------v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~--~~~v~~~a~~~l~n 309 (415)
..++|.++.++..++.. +-+..-.++..++ .|=++.|..++.++ +.-++..|+.++..
T Consensus 72 ~~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv~------------~G~~~~L~~li~~~~~~~yvR~aa~~aL~~ 139 (249)
T PF06685_consen 72 ERALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASVG------------DGDIEPLKELIEDPDADEYVRMAAISALAF 139 (249)
T ss_pred hhhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHHh------------CCCHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 46788999999765532 2222222333333 34456666777655 45689999999999
Q ss_pred hhcCChHHHHHHHHCCChHHHHHH-hcCCCccchHHHHHHHHHHHhcC----CHHHHHHHHHcCCHHHHH
Q 014945 310 IVTGDDMQTQCIINHQALPCLLDL-LTQNYKKSIKKEACWTISNITAG----NVNQIQAIIEAGIIGPLV 374 (415)
Q Consensus 310 l~~~~~~~~~~~~~~~~l~~L~~l-l~~~~~~~v~~~a~~~l~nl~~~----~~~~~~~l~~~~~i~~L~ 374 (415)
++...+..+..+++. +..++.. +... +.. .-.+.+++++.- --+.++.+.+.|+++..+
T Consensus 140 l~~~~~~~Re~vi~~--f~~ll~~~l~~~--~~~--~~~~Lv~~~~dL~~~EL~~~I~~~f~~~lVd~~~ 203 (249)
T PF06685_consen 140 LVHEGPISREEVIQY--FRELLNYFLERN--PSF--LWGSLVADICDLYPEELLPEIRKAFEDGLVDPSF 203 (249)
T ss_pred HHHcCCCCHHHHHHH--HHHHHHHHhccC--chH--HHHHHHHHHHhcCHHHhHHHHHHHHHcCCCCccc
Confidence 999887767765552 3333333 3322 222 122233455442 234456666778876644
No 280
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=88.31 E-value=12 Score=38.49 Aligned_cols=145 Identities=17% Similarity=0.198 Sum_probs=93.2
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhH
Q 014945 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 151 (415)
Q Consensus 72 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~ 151 (415)
-+..+...+.++++..-...+.++..+...+..++.. ...-++.-..-.+..- ..+......+|..++.-+++...
T Consensus 442 lW~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~---~~~~~~~~~~~~N~~~-~~~~~~~~~il~rls~~~~~~L~ 517 (727)
T PF12726_consen 442 LWKALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK---EKDELDPAKTQFNKSL-GQITDLISQILERLSDFDPSHLK 517 (727)
T ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHhccccccCCcc---cccCcchHHHHHHHHH-HHHHHHHHHHHHHHhcCCHHHHH
Confidence 3567777777888877777777777776544222222 1111122222222222 45677778899999998888777
Q ss_pred HHHh-CCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhC
Q 014945 152 VVID-HGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 230 (415)
Q Consensus 152 ~~~~-~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~ 230 (415)
.+.. .+....++.++-++++++.+.|...|........ | .+.+-.++ +..-........+.+..+...
T Consensus 518 ~l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~~~--R--------~e~i~~ll-~~~~~~tL~ai~~~l~~~~~~ 586 (727)
T PF12726_consen 518 ELLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDVDG--R--------LEAIQALL-QSNFSPTLSAINWSLRQLTKL 586 (727)
T ss_pred HHHcCcchhhHHHhheeCCChHHHHHHHHHHHHHhcCCc--H--------HHHHHHHH-HHhHHHHHHHHHHHHHHHHhh
Confidence 6665 6888999999999999999999999999875332 2 22333344 333344566677777777765
Q ss_pred C
Q 014945 231 K 231 (415)
Q Consensus 231 ~ 231 (415)
.
T Consensus 587 ~ 587 (727)
T PF12726_consen 587 K 587 (727)
T ss_pred h
Confidence 4
No 281
>PF11538 Snurportin1: Snurportin1; InterPro: IPR024721 Snurportin-1 is a nuclear import receptor that contains an N-terminal importin beta binding domain which is essential for its function as an snRNP-specific nuclear import receptor []. Snurportin-1 interacts with m3G-cap where it enhances the m3G-cap dependent nuclear import of U snRNPs in Xenopus laevis oocytes and digitonin-permeabilized HeLa cells []. This entry represents the snurportin-1 N-terminal importin beta binding domain (IBB). The essential role of the IBB domain for snurportin-1 function suggests that snurportin-1 cooperates with importin beta in mediating nuclear import of snRNPs.; GO: 0005515 protein binding; PDB: 3LWW_D 3NC0_E 3NBZ_E 2Q5D_C 3NBY_B 3GB8_B 3GJX_B 2QNA_B 2P8Q_B.
Probab=88.19 E-value=0.48 Score=27.70 Aligned_cols=38 Identities=34% Similarity=0.394 Sum_probs=24.3
Q ss_pred HHhhhccCCCCchHHHHhHHHHHHHHHHHhhhHHHHhhh
Q 014945 11 VRRSKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKR 49 (415)
Q Consensus 11 ~~~~~~k~~~~~~~~r~~r~~~~~~lRk~~r~~~~~~~R 49 (415)
+|...||+..+..+.-++| +...+.-|.+|-+.++..|
T Consensus 2 PR~sqYK~~~~~~~Q~eRR-~~~Le~QK~kR~d~~~~aR 39 (40)
T PF11538_consen 2 PRLSQYKNKGSALDQEERR-REFLERQKNKRLDYVNHAR 39 (40)
T ss_dssp TTCSCTT-TTTSCSHHHHH-HHHHHHHHSHHSHHHHHHH
T ss_pred ccHHHhhcccchHhHHHHH-HHHHHHHHHHhHHHHHhcc
Confidence 6888999854444444444 4556777778877776665
No 282
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=87.98 E-value=2 Score=33.87 Aligned_cols=74 Identities=16% Similarity=0.139 Sum_probs=59.8
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhC
Q 014945 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIAS 144 (415)
Q Consensus 71 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~ 144 (415)
+.+..+.+.|++.++.++..|+..|..+....+.....++...+++..|+.++.....+.++..++..+...+.
T Consensus 37 ~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 37 DCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWAD 110 (144)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 46778888899999999999999999987655344445677888999999999984338999999988887764
No 283
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=87.81 E-value=16 Score=34.84 Aligned_cols=228 Identities=9% Similarity=0.039 Sum_probs=112.5
Q ss_pred CCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCC----CchhhhhchHH
Q 014945 169 PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQ----PLFEQTRPALP 244 (415)
Q Consensus 169 ~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~----~~~~~~~~~l~ 244 (415)
+|+.+.....+++.-+-.+-......+++. .+..+....++..++..-.+...+++.+.+.... ........++|
T Consensus 42 ENeylMk~iMRvl~~~~e~~~p~~~~il~~-L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P 120 (435)
T PF03378_consen 42 ENEYLMKCIMRVLSVLQEDILPIAVEILQH-LTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFP 120 (435)
T ss_dssp C-HHHHHHHHHHHHHSTTTTGGGHHHHHHH-HHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHH
T ss_pred cchHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHH
Confidence 466677677777666655444343443332 2333333333445777777777777766654322 22234567789
Q ss_pred HHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCC---ChhhHHHHHHHHHHhhcCChHHHHHH
Q 014945 245 ALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP---SPSVLIPALRTVGNIVTGDDMQTQCI 321 (415)
Q Consensus 245 ~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~---~~~v~~~a~~~l~nl~~~~~~~~~~~ 321 (415)
.+...|+.+-.+..-++.-.++.+....+. ..+ .......+-.+|... ...-.-+..+.|.++....+...
T Consensus 121 ~f~~ILq~dV~EF~PYvfQIla~Lle~~~~--~~~-p~~y~~L~~~Ll~p~lWe~~gniPalvrLL~a~i~k~~~~i--- 194 (435)
T PF03378_consen 121 PFQEILQQDVQEFIPYVFQILAQLLELRPS--SPL-PDAYKQLFPPLLSPALWERRGNIPALVRLLQAYIKKDPSFI--- 194 (435)
T ss_dssp HHHHHHHTT-TTTHHHHHHHHHHHHHHSS----S---TTTGGGHHHHTSGGGGGSTTTHHHHHHHHHHHHHHHGGG----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--CCC-cHHHHHHHHHHcCcchhccCCCcCcHHHHHHHHHHhCchhh---
Confidence 999999888777778888888877654330 001 111122222222221 11223445556666665443322
Q ss_pred HHC----CChHHHHHHhcCCCccchHHHHHHHHHHHhcCC-HHHHHHHHHcCCHHHHHHHhcc-CCHHHHHHHHHHHHHH
Q 014945 322 INH----QALPCLLDLLTQNYKKSIKKEACWTISNITAGN-VNQIQAIIEAGIIGPLVNLLLN-AEFEIKKEAAWAISNA 395 (415)
Q Consensus 322 ~~~----~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~-~~~~~~l~~~~~i~~L~~~l~~-~~~~v~~~a~~aL~nl 395 (415)
... +++..+-+++.+. .. -..+...|..+...- .+..+..+.. ++..++.-|++ ..++..+.-+..++.+
T Consensus 195 ~~~~~l~~iLgvFQkLi~sk-~~--D~~gF~LL~~iv~~~p~~~l~~yl~~-I~~lll~RLq~skT~kf~~~fv~F~~~~ 270 (435)
T PF03378_consen 195 VANNQLEPILGVFQKLIASK-AN--DHYGFDLLESIVENLPPEALEPYLKQ-IFTLLLTRLQSSKTEKFVKRFVVFLSLF 270 (435)
T ss_dssp ---S-CHHHHHHHHHHHT-T-TC--HHHHHHHHHHHHHHS-HHHHGGGHHH-HHHHHHHHHHHC--HHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHCCC-Cc--chHHHHHHHHHHHHCCHHHHHHHHHH-HHHHHHHHHhhCCcHHHHHHHHHHHHHH
Confidence 222 3344444666665 32 245677777777643 3344444443 56666666654 5566666666666666
Q ss_pred hCCCCHHHHHHH
Q 014945 396 TSGGSNEQIKYK 407 (415)
Q Consensus 396 ~~~~~~~~~~~l 407 (415)
+..-+++.+-..
T Consensus 271 ~~~~g~~~li~~ 282 (435)
T PF03378_consen 271 AIKYGPDFLIQT 282 (435)
T ss_dssp HHHH-HHHHHHH
T ss_pred HHHcCHHHHHHH
Confidence 544344444333
No 284
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=87.57 E-value=57 Score=37.17 Aligned_cols=273 Identities=12% Similarity=0.123 Sum_probs=143.3
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHHhCCCchhhH---HHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhcCCCchhHHH
Q 014945 119 FIEFLSRDDFPQLQFEAAWALTNIASGTSENTR---VVIDHGAVPIFVRLLS-SPTDDVREQAVWALGNVAGDSPKCRDL 194 (415)
Q Consensus 119 L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~---~~~~~g~i~~L~~ll~-~~~~~v~~~a~~~L~nl~~~~~~~~~~ 194 (415)
++..-.+++ ..+...|+..|..++..--+..+ .-.+...+.++..++. +.+.++++..+.|+.++..... ..
T Consensus 1142 f~~vg~~~n-~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~---~n 1217 (1780)
T PLN03076 1142 FVTIGCSEN-LSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRV---NN 1217 (1780)
T ss_pred HHHhcCCcc-hhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH---hh
Confidence 444434445 67888888888777752221111 1112235666666555 4678999999999999864322 11
Q ss_pred HHhcCChHHHHHHhc---cchhHhHHHHHHHHHHHhhhCC-C---CCchhhhhchHHHHHHhhcCC-ChhHHHHHHHHHH
Q 014945 195 VLSNGALMPLLAQFN---EHAKLSMLRNATWTLSNFCRGK-P---QPLFEQTRPALPALERLIHSN-DDEVLTDACWALS 266 (415)
Q Consensus 195 ~~~~g~i~~L~~~l~---~~~~~~~~~~a~~~l~~l~~~~-~---~~~~~~~~~~l~~l~~lL~~~-d~~v~~~a~~~l~ 266 (415)
+.. +...++.++. .+.++.+...+..++..++... + .........++..+..+-... +.++--.|+..+.
T Consensus 1218 -IkS-GWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~ 1295 (1780)
T PLN03076 1218 -VKS-GWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLR 1295 (1780)
T ss_pred -hhc-CcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHH
Confidence 233 4445555442 3456777777777777776553 2 111234455555555555433 3445445555444
Q ss_pred Hhc----cCCh-----------------------HHHH-----HHHHcCcHHH---HHHhcCCCChhhHHHHHHHHHHhh
Q 014945 267 YLS----DGTN-----------------------DKIQ-----AVIEAGVCPR---LVELLRHPSPSVLIPALRTVGNIV 311 (415)
Q Consensus 267 ~l~----~~~~-----------------------~~~~-----~~~~~~~i~~---L~~lL~~~~~~v~~~a~~~l~nl~ 311 (415)
+++ .+.. +... .......++. |..+..++..+||..|+.+|-.+.
T Consensus 1296 ~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL 1375 (1780)
T PLN03076 1296 FCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTL 1375 (1780)
T ss_pred HHHHHHHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 331 1000 0000 0000122333 333345678899999999887776
Q ss_pred cCCh-----HHHHHHHHCCChHHHHHHhcCCC----------------------ccchHHHHHHHHHHHhc---CCHHHH
Q 014945 312 TGDD-----MQTQCIINHQALPCLLDLLTQNY----------------------KKSIKKEACWTISNITA---GNVNQI 361 (415)
Q Consensus 312 ~~~~-----~~~~~~~~~~~l~~L~~ll~~~~----------------------~~~v~~~a~~~l~nl~~---~~~~~~ 361 (415)
.... +.=..++. +++-+++..+++.. +..+...+..+|.+++. ..-+.+
T Consensus 1376 ~~yG~~Fs~~~W~~if~-~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L 1454 (1780)
T PLN03076 1376 RNHGHLFSLPLWERVFE-SVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTV 1454 (1780)
T ss_pred HHhhccCCHHHHHHHHH-HHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4221 11122222 44455554443210 00122333334444443 333333
Q ss_pred HHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhCCC
Q 014945 362 QAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG 399 (415)
Q Consensus 362 ~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~~ 399 (415)
..+++ +++..|..++..++..+....+.+|.++...+
T Consensus 1455 ~~~L~-~~l~ll~~ci~q~n~~la~ig~~~l~~li~~n 1491 (1780)
T PLN03076 1455 NPLLK-KVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNA 1491 (1780)
T ss_pred HHHHH-HHHHHHHHHHcCchHHHHHHHHHHHHHHHHHh
Confidence 34333 36667777777788889999999999998544
No 285
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=87.49 E-value=7.3 Score=35.87 Aligned_cols=213 Identities=18% Similarity=0.116 Sum_probs=104.6
Q ss_pred CchHHHHHhhcCCCChHHHHHHHHHHHHHhCCC-chhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhH
Q 014945 114 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGT-SENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 192 (415)
Q Consensus 114 g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~ 192 (415)
.++..|..++..+.++......+.+++.-...- .+. ...++..+..-+.+..+.+|..-+.+++.+....+...
T Consensus 22 ~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~-----~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~ 96 (339)
T PF12074_consen 22 KIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSEL-----PKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSD 96 (339)
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCC-----CHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCch
Confidence 356777777776554666777777665533211 111 12346677777777777799888888888775111000
Q ss_pred HHHHhcCChHHHHHHhccc---hhHhHH---HHHHHHHHHhhhCC-CCCch--h----hhhchHHHHH---HhhcC-CCh
Q 014945 193 DLVLSNGALMPLLAQFNEH---AKLSML---RNATWTLSNFCRGK-PQPLF--E----QTRPALPALE---RLIHS-NDD 255 (415)
Q Consensus 193 ~~~~~~g~i~~L~~~l~~~---~~~~~~---~~a~~~l~~l~~~~-~~~~~--~----~~~~~l~~l~---~lL~~-~d~ 255 (415)
..-.-..+++.|+..+... +.+... -.++.++..++... +.... . ...+-=|.++ +++.. .++
T Consensus 97 ~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl~~~ 176 (339)
T PF12074_consen 97 SLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKIDSKNISFWSLALDPKPSFLLSEKVYSKLASE 176 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhhhhhhhhhhhhccCCCcchhcCHHHHhccCCH
Confidence 1111223667777776321 111101 01111111111111 00000 0 0000000000 11222 334
Q ss_pred hHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCC--ChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHH
Q 014945 256 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP--SPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDL 333 (415)
Q Consensus 256 ~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~--~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~l 333 (415)
+-....+.++..+..+.......-.....-..++.++-++ .+.+|..|+.++..+....+.. +...++..+...
T Consensus 177 ~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~----l~~~li~~l~~~ 252 (339)
T PF12074_consen 177 EDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL----LSKSLISGLWKW 252 (339)
T ss_pred hHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH----HHHHHHHHHHHH
Confidence 4444555566555543332211111223456788888777 8899999999999999887753 223344555555
Q ss_pred hc
Q 014945 334 LT 335 (415)
Q Consensus 334 l~ 335 (415)
+.
T Consensus 253 l~ 254 (339)
T PF12074_consen 253 LS 254 (339)
T ss_pred HH
Confidence 53
No 286
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=87.12 E-value=2.4 Score=32.92 Aligned_cols=74 Identities=9% Similarity=0.021 Sum_probs=56.9
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChH-HHHHHHHHHHHHhC
Q 014945 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQ-LQFEAAWALTNIAS 144 (415)
Q Consensus 71 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~-i~~~a~~~L~~l~~ 144 (415)
.++..+.+.|++.++.++..|+..|-.++.....+...++...+++..|..+++...... ++..++..+...+.
T Consensus 37 ~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 37 DAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 467788889999999999999999999876543344456667889999999998765333 88888877766554
No 287
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.91 E-value=30 Score=35.28 Aligned_cols=282 Identities=12% Similarity=0.098 Sum_probs=131.8
Q ss_pred HHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHH-hhCCC--CHHHHHHHHHHHHHhcC
Q 014945 110 VIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVR-LLSSP--TDDVREQAVWALGNVAG 186 (415)
Q Consensus 110 ~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~-ll~~~--~~~v~~~a~~~L~nl~~ 186 (415)
+.+.+.+...-+-|..+|...-|+.|+..+..++.........++. +.+..++. +..++ +..-.+.+++.+..++.
T Consensus 357 lFED~pleYiRRDlEGsDvdTRRR~a~dlvrgL~~~fe~~vt~v~~-~~v~~~l~~y~~nPS~nWk~kd~aiyL~talai 435 (960)
T KOG1992|consen 357 LFEDNPLEYIRRDLEGSDVDTRRRAAIDLVRGLCKNFEGQVTGVFS-SEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAI 435 (960)
T ss_pred HhccCHHHHHHHhcccCCcchhHHHHHHHHHHHHHHhcchhHHHHH-HHHHHHHHHhccCCCccccccchhhhhhHHHHh
Confidence 3444455555555555552233556666777777754323233332 22333333 33333 34446677777777764
Q ss_pred CCchhHHHHHhcCC----hHHH----HHHhcc-c-hhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChh
Q 014945 187 DSPKCRDLVLSNGA----LMPL----LAQFNE-H-AKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDE 256 (415)
Q Consensus 187 ~~~~~~~~~~~~g~----i~~L----~~~l~~-~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~ 256 (415)
.....+.-+....- ...+ +.-|.+ + .+..+.+. .++..+...............+|.++.+|+.+..-
T Consensus 436 k~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn~~pilka--~aIKy~~~FR~ql~~~~lm~~~p~li~~L~a~s~v 513 (960)
T KOG1992|consen 436 KGQTAKHGVTSTNELVDVVDFFANQILPDLLSPNVNEFPILKA--DAIKYIYTFRNQLGKEHLMALLPRLIRFLEAESRV 513 (960)
T ss_pred hcchhhcceeeccccccHHHHHHHHhhHHhccCccccccchhh--cccceeeeecccCChHHHHHHHHHHHHhccCcchH
Confidence 43221111111111 1111 111211 1 11111111 12222222223344455678899999999999999
Q ss_pred HHHHHHHHHHHhccCChH-HHHHHHHcCcHH-------HHHHhcCCC----ChhhHHHHHHHHHHhhcCChHHHHHHHH-
Q 014945 257 VLTDACWALSYLSDGTND-KIQAVIEAGVCP-------RLVELLRHP----SPSVLIPALRTVGNIVTGDDMQTQCIIN- 323 (415)
Q Consensus 257 v~~~a~~~l~~l~~~~~~-~~~~~~~~~~i~-------~L~~lL~~~----~~~v~~~a~~~l~nl~~~~~~~~~~~~~- 323 (415)
+-.+|+.++-.+..-.+. ....+-...+.+ -|...++.+ ++-+.....+.++-. ++.+.....
T Consensus 514 vhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaImRii~i~----~~~i~p~~~~ 589 (960)
T KOG1992|consen 514 VHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIMRIISIL----QSAIIPHAPE 589 (960)
T ss_pred HHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHhC----HHhhhhhhhH
Confidence 999999988776432222 111111112222 222223322 344444455544332 222211111
Q ss_pred --CCChHHHHHHhcCCCccchHHHHHH----HHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhC
Q 014945 324 --HQALPCLLDLLTQNYKKSIKKEACW----TISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 397 (415)
Q Consensus 324 --~~~l~~L~~ll~~~~~~~v~~~a~~----~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~ 397 (415)
.++-+.+....+++.+|..-....- ++...+..++..+..+.+ .++|.+..++..+-.+.--.+...++-+..
T Consensus 590 ~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~vs~~e~-aL~p~fq~Il~eDI~EfiPYvfQlla~lve 668 (960)
T KOG1992|consen 590 LLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAVSSLEE-ALFPVFQTILSEDIQEFIPYVFQLLAVLVE 668 (960)
T ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccCchHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1233344444455545544333333 333333345554444444 378888888876666677777777777765
Q ss_pred CC
Q 014945 398 GG 399 (415)
Q Consensus 398 ~~ 399 (415)
..
T Consensus 669 ~~ 670 (960)
T KOG1992|consen 669 HS 670 (960)
T ss_pred hc
Confidence 43
No 288
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=86.55 E-value=2.6 Score=35.96 Aligned_cols=80 Identities=24% Similarity=0.255 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHhCCCchhhHHHHhCCC-------hHHHHHhhCC-CCHHHHHHHHHHHHHhcCCCch-hHHHHHhcCC
Q 014945 130 QLQFEAAWALTNIASGTSENTRVVIDHGA-------VPIFVRLLSS-PTDDVREQAVWALGNVAGDSPK-CRDLVLSNGA 200 (415)
Q Consensus 130 ~i~~~a~~~L~~l~~~~~~~~~~~~~~g~-------i~~L~~ll~~-~~~~v~~~a~~~L~nl~~~~~~-~~~~~~~~g~ 200 (415)
.-|..|+.+|++++-. ..+.+.+...+- +..|++++.. +++-.+|.|+-.|.+++..+.. ++....+.+.
T Consensus 139 SPqrlaLEaLcKLsV~-e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~ 217 (257)
T PF12031_consen 139 SPQRLALEALCKLSVI-ENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC 217 (257)
T ss_pred CHHHHHHHHHHHhhee-ccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence 4689999999999974 555555555543 4455555554 6788999999999999976654 4566677888
Q ss_pred hHHHHHHhcc
Q 014945 201 LMPLLAQFNE 210 (415)
Q Consensus 201 i~~L~~~l~~ 210 (415)
+..|+.++.+
T Consensus 218 i~~Li~FiE~ 227 (257)
T PF12031_consen 218 ISHLIAFIED 227 (257)
T ss_pred HHHHHHHHHH
Confidence 9999999943
No 289
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.34 E-value=38 Score=33.80 Aligned_cols=290 Identities=11% Similarity=0.118 Sum_probs=139.2
Q ss_pred cHHHHHHhhc-CCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhh
Q 014945 72 SLPAMVAGVW-SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 150 (415)
Q Consensus 72 ~i~~l~~~l~-~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~ 150 (415)
.++.+.+.|. +.|+..+..|-..|+.+... ++ .+....-++..++.+--+..|..+|..+.++... .
T Consensus 6 qLe~lCk~LY~s~D~~~R~~AE~~L~e~s~s--pe---------clskCqlll~~gs~pYs~mlAst~L~Klvs~~t~-l 73 (1082)
T KOG1410|consen 6 QLESLCKDLYESTDPTARHRAEKALAELSES--PE---------CLSKCQLLLERGSYPYSQMLASTCLMKLVSRKTP-L 73 (1082)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHccC--HH---------HHHHHHHHHHcCCCchHHHHHHHHHHHHHcCCCC-C
Confidence 4566666555 78999999999998887422 12 2333333444444466677788888887765331 1
Q ss_pred HHHHhCCChHHHHHhhCCCCH----HHHHHHHHHHHHhcCCCc--hhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHH
Q 014945 151 RVVIDHGAVPIFVRLLSSPTD----DVREQAVWALGNVAGDSP--KCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTL 224 (415)
Q Consensus 151 ~~~~~~g~i~~L~~ll~~~~~----~v~~~a~~~L~nl~~~~~--~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l 224 (415)
.......+-..+++++....| -+....+..++.|..-.. ..++...-...+..+.+.+ +..+.+-...+...|
T Consensus 74 pl~qrldir~Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~v~~~~kfl-~~~~ve~~~igv~iL 152 (1082)
T KOG1410|consen 74 PLEQRLDIRNYILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFRDPVDDVTKFL-QMDNVEHCIIGVQIL 152 (1082)
T ss_pred cHHHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchhhhhHHHHHHHh-ccCchHHHHHHHHHH
Confidence 111122334456666655333 334444445555542111 1111111222455566666 444444444444555
Q ss_pred HHhhhCC-------CCCchhhh---------hchHHHHHHhhcC------CC---hhHHHHHHHHHHHhc---------c
Q 014945 225 SNFCRGK-------PQPLFEQT---------RPALPALERLIHS------ND---DEVLTDACWALSYLS---------D 270 (415)
Q Consensus 225 ~~l~~~~-------~~~~~~~~---------~~~l~~l~~lL~~------~d---~~v~~~a~~~l~~l~---------~ 270 (415)
..|.... |......+ ..++..-..+|+. +| ..+...++..-.+.. +
T Consensus 153 sqLvqemN~~~~~~p~tkHRkias~FRD~sL~~vf~laln~L~~~~~~nlnd~~q~~L~~~vL~L~l~Cl~FDfiGss~D 232 (1082)
T KOG1410|consen 153 SQLVQEMNQADGMDPSTKHRKIASSFRDDSLFDVFSLALNLLKDNVDLNLNDRAQLGLLMQVLKLNLNCLNFDFIGSSTD 232 (1082)
T ss_pred HHHHHHhhCCCCCCcchHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccCcccHhHhhHHHHHHHHHhhhccccccccccc
Confidence 5554332 11111100 1111111122211 11 112222222221111 1
Q ss_pred ----------CChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcC-----ChHHHHHHHHCCChHHHHHHhc
Q 014945 271 ----------GTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG-----DDMQTQCIINHQALPCLLDLLT 335 (415)
Q Consensus 271 ----------~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~-----~~~~~~~~~~~~~l~~L~~ll~ 335 (415)
-+......+.+...++....+..+-.+.....++.+|..+++- ++..+...+. .+++-...++.
T Consensus 233 Essed~ctVQIPTsWRs~f~d~stlqlfFdly~slp~~~S~~alsclvqlASvRRsLFN~aeRa~yl~-~Lv~Gvk~il~ 311 (1082)
T KOG1410|consen 233 ESSEDLCTVQIPTSWRSSFLDSSTLQLFFDLYHSLPPELSELALSCLVQLASVRRSLFNGAERAKYLQ-HLVEGVKRILE 311 (1082)
T ss_pred cccccccceecCcHHHHHhcCchHHHHHHHHhccCCchhhHHHHHHHHHHHHHHHHHhCCHHHHHHHH-HHHHHHHHHHh
Confidence 1112233455667788888888888888889999999988852 1112222222 23444555565
Q ss_pred CCC---ccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHh
Q 014945 336 QNY---KKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLL 377 (415)
Q Consensus 336 ~~~---~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l 377 (415)
++. ++.--.+-|..|+.+-.+ -+.-.++.-...+..++++
T Consensus 312 np~~LsD~~nyHeFCRllaRlktN--YQL~ELv~v~~Y~e~irLi 354 (1082)
T KOG1410|consen 312 NPQGLSDPANYHEFCRLLARLKTN--YQLGELVKVECYPEVIRLI 354 (1082)
T ss_pred CCcCCCCcchHHHHHHHHHHHHhh--hhhHhhhccCCcHHHHHHH
Confidence 542 455556666666665442 2334444444444444443
No 290
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=85.81 E-value=15 Score=28.84 Aligned_cols=74 Identities=14% Similarity=0.070 Sum_probs=60.5
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhcCCC-chhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCC
Q 014945 158 AVPIFVRLLSSPTDDVREQAVWALGNVAGDS-PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK 231 (415)
Q Consensus 158 ~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~-~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~ 231 (415)
++..|.+-|.+.++.++-.|+..|-.+..+. ..+...+...+++..|..++....++.++..++..+..-+...
T Consensus 42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f 116 (142)
T cd03569 42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAF 116 (142)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHh
Confidence 5677788888899999999999999888764 5578888888899999999966678888888888887777554
No 291
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=85.77 E-value=11 Score=29.77 Aligned_cols=97 Identities=9% Similarity=0.088 Sum_probs=71.3
Q ss_pred cCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCH-HHHHHHHHcCCH
Q 014945 292 LRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV-NQIQAIIEAGII 370 (415)
Q Consensus 292 L~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~-~~~~~l~~~~~i 370 (415)
+..+++......|..+..=.. ... .++..|.+-+.++ ++.+...|...|-.++.++. .....+.+.+++
T Consensus 13 l~~~dw~~il~icD~I~~~~~----~~k-----~a~ral~KRl~~~-n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl 82 (144)
T cd03568 13 LTSENWGLILDVCDKVKSDEN----GAK-----DCLKAIMKRLNHK-DPNVQLRALTLLDACAENCGKRFHQEVASRDFT 82 (144)
T ss_pred CCCcCHHHHHHHHHHHhcCCc----cHH-----HHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHH
Confidence 345677777777766654211 111 3466788888888 99999999999988887544 444566678899
Q ss_pred HHHHHHhcc-CCHHHHHHHHHHHHHHhCC
Q 014945 371 GPLVNLLLN-AEFEIKKEAAWAISNATSG 398 (415)
Q Consensus 371 ~~L~~~l~~-~~~~v~~~a~~aL~nl~~~ 398 (415)
..|.+++.. .++.|+..++..+...+..
T Consensus 83 ~eL~kl~~~~~~~~Vk~kil~li~~W~~~ 111 (144)
T cd03568 83 QELKKLINDRVHPTVKEKLREVVKQWADE 111 (144)
T ss_pred HHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence 999999988 7899999999988888643
No 292
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=85.75 E-value=3.5 Score=32.26 Aligned_cols=73 Identities=12% Similarity=0.040 Sum_probs=57.1
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcC------CCChHHHHHHHHHHHHHhC
Q 014945 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSR------DDFPQLQFEAAWALTNIAS 144 (415)
Q Consensus 71 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~------~~~~~i~~~a~~~L~~l~~ 144 (415)
.++..+.+.|++.++.++..|+..|-.+...-....-.++...+++..|++++.. .+ +.++..++..+...+.
T Consensus 38 ~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~-~~Vk~kil~li~~W~~ 116 (139)
T cd03567 38 LAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTS-EKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCC-HHHHHHHHHHHHHHHH
Confidence 4677888899999999999999999888765434444567788899999999963 33 7888888888866654
No 293
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=85.63 E-value=4.8 Score=31.29 Aligned_cols=74 Identities=15% Similarity=0.095 Sum_probs=56.7
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCC--CChHHHHHHHHHHHHHhC
Q 014945 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRD--DFPQLQFEAAWALTNIAS 144 (415)
Q Consensus 71 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~--~~~~i~~~a~~~L~~l~~ 144 (415)
+++..|.+.|+++++.++..|+..|-.+......+....+....++..|++++... .++.++..++..+...+.
T Consensus 37 ~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 37 EAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 46788888999999999999999999987654233334455657888899999863 237899999888877665
No 294
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=85.35 E-value=15 Score=28.43 Aligned_cols=74 Identities=12% Similarity=0.016 Sum_probs=59.7
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCch-hHHHHHhcCChHHHHHHhcc--chhHhHHHHHHHHHHHhhhCC
Q 014945 158 AVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK-CRDLVLSNGALMPLLAQFNE--HAKLSMLRNATWTLSNFCRGK 231 (415)
Q Consensus 158 ~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~-~~~~~~~~g~i~~L~~~l~~--~~~~~~~~~a~~~l~~l~~~~ 231 (415)
++..|-.-|.++++.++..|+..|-.+..++.. ++..+....++..|+.++.. ..+..++..++..+.......
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f 114 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESF 114 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 466778888889999999999999999877644 77777777888889999854 457889998888888777654
No 295
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.94 E-value=13 Score=38.78 Aligned_cols=292 Identities=18% Similarity=0.161 Sum_probs=155.8
Q ss_pred hccHHHHHH-hhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCC---
Q 014945 70 LESLPAMVA-GVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASG--- 145 (415)
Q Consensus 70 ~~~i~~l~~-~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~--- 145 (415)
++++..|-. .|++.+.+.+...+..+.++.+.. .++....-+.--+|.|+.-+..-. ..+|...+.+|..-...
T Consensus 465 LeAvqmLqdiFLkaenkdlqaeVlnrmfkIftsh-peNYricqelytvpllvlnmegfP-sslqvkiLkilEyAVtvvnc 542 (2799)
T KOG1788|consen 465 LEAVQMLQDIFLKAENKDLQAEVLNRMFKIFTSH-PENYRICQELYTVPLLVLNMEGFP-SSLQVKILKILEYAVTVVNC 542 (2799)
T ss_pred hHHHHHHHHHHHHhcCcchhhHHHHHHHHHhccC-hHHhhHHhhccccchhhhhhcCCC-hHHHHHHHHHHHHHHhhhcc
Confidence 344444433 455778888888888888887643 444444445667888888777655 56776666655432221
Q ss_pred CchhhHHHHhCCChHHHHHhhCCC-CHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHH
Q 014945 146 TSENTRVVIDHGAVPIFVRLLSSP-TDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTL 224 (415)
Q Consensus 146 ~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l 224 (415)
-|+ +. +-.|+-+|+.+ ...+....+.....+...+..+++.+.+-|.++.|...+.++.-. .--.-....
T Consensus 543 vPe--qE------LlSLCvLLqqpIssalkhtIlsffvKLIsfDqqyKkvlREVGvLevLqddlkqhkll-~gpdqysgv 613 (2799)
T KOG1788|consen 543 VPE--QE------LLSLCVLLQQPISSALKHTILSFFVKLISFDQQYKKVLREVGVLEVLQDDLKQHKLL-RGPDQYSGV 613 (2799)
T ss_pred CcH--HH------HHHHHHHhcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHhhhc-cCcchhhhH
Confidence 011 11 22355666654 344555566666667777777889999999999988877432100 000000111
Q ss_pred HHhhhCCCCC-chhhh---hchHHHHHHhhcCC---Ch--hHH---HHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhc
Q 014945 225 SNFCRGKPQP-LFEQT---RPALPALERLIHSN---DD--EVL---TDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL 292 (415)
Q Consensus 225 ~~l~~~~~~~-~~~~~---~~~l~~l~~lL~~~---d~--~v~---~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL 292 (415)
+.....++.. .+... ...+-.--.++.+. ++ ++. ...-.++..+..++.++...+.+..++..++.++
T Consensus 614 sehydrnpss~sf~~~ld~~daiisspklmeSgsgklplfevlltitvgwDcLisllKnnteNqklFreanGvklilpfl 693 (2799)
T KOG1788|consen 614 SEHYDRNPSSPSFKQHLDSQDAIISSPKLMESGSGKLPLFEVLLTITVGWDCLISLLKNNTENQKLFREANGVKLILPFL 693 (2799)
T ss_pred HHHhhcCCCCchhhhccccccceeecchhhcccCCccchhhhhhhhhchHHHHHHHHhccchhhHHHHhhcCceEEEEee
Confidence 1222222111 11100 00000001111221 11 000 0112245555566666656677777778888888
Q ss_pred CCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCC-------C----ccchHHHHHHHHHHHhcCCHHHH
Q 014945 293 RHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN-------Y----KKSIKKEACWTISNITAGNVNQI 361 (415)
Q Consensus 293 ~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~-------~----~~~v~~~a~~~l~nl~~~~~~~~ 361 (415)
- ++..+...++++..+....+.+.. +.-+-.++..|+++ + .....+....++..+..-+....
T Consensus 694 i--ndehRSslLrivscLitvdpkqvh----hqelmalVdtLksgmvt~IsgeqyklhfsllcdlmGalwrivgvngsaq 767 (2799)
T KOG1788|consen 694 I--NDEHRSSLLRIVSCLITVDPKQVH----HQELMALVDTLKSGMVTRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQ 767 (2799)
T ss_pred e--chHHHHHHHHHHHHHhccCccccc----HHHHHHHHHHHHhcceeccchhHHHHHHHHHHHHHHHHHHHHccCchhe
Confidence 3 445688888888888876654321 12234455566552 0 12344555666667765444445
Q ss_pred HHHHHcCCHHHHHHHhc
Q 014945 362 QAIIEAGIIGPLVNLLL 378 (415)
Q Consensus 362 ~~l~~~~~i~~L~~~l~ 378 (415)
..+-+++++..|...|.
T Consensus 768 rvFgeatGFslLlttLh 784 (2799)
T KOG1788|consen 768 RVFGEATGFSLLLTTLH 784 (2799)
T ss_pred eehhccccHHHHHHHHH
Confidence 56667777777766653
No 296
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=84.85 E-value=34 Score=31.90 Aligned_cols=156 Identities=9% Similarity=0.052 Sum_probs=87.3
Q ss_pred HHHHHhhcCCC-HHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhc--C-C------CChHHHHHHHHHHHHHh
Q 014945 74 PAMVAGVWSDD-RNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLS--R-D------DFPQLQFEAAWALTNIA 143 (415)
Q Consensus 74 ~~l~~~l~~~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~--~-~------~~~~i~~~a~~~L~~l~ 143 (415)
..++..|..+. +..+...+..++-+ +.+ ....+-+.....+..|+.+-. + . .+..+..+++.||+|+.
T Consensus 48 e~i~~Vle~~~p~t~~v~~LetvrIL-SRd-k~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlv 125 (532)
T KOG4464|consen 48 ERIFEVLENGEPLTHRVVCLETVRIL-SRD-KDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLV 125 (532)
T ss_pred HHHHHHHhcCCCchhhhhHHHHHHHH-hcc-ccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHH
Confidence 45666666655 34455566666655 332 122222222223444444432 1 1 12578999999999999
Q ss_pred CCCchhhHHHHhCCChHHHHHhhCCC-----CHHHHHHHHHHHHHhcCCCchhH-HHHHhcCChHHHHHHhcc-----c-
Q 014945 144 SGTSENTRVVIDHGAVPIFVRLLSSP-----TDDVREQAVWALGNVAGDSPKCR-DLVLSNGALMPLLAQFNE-----H- 211 (415)
Q Consensus 144 ~~~~~~~~~~~~~g~i~~L~~ll~~~-----~~~v~~~a~~~L~nl~~~~~~~~-~~~~~~g~i~~L~~~l~~-----~- 211 (415)
..++..+..+.++.....+++.+... ...+...-+..|.-+..-.+..| ..+.+.++++.+.+.+.. +
T Consensus 126 f~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~lgidse 205 (532)
T KOG4464|consen 126 FHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDKLGIDSE 205 (532)
T ss_pred hccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhccccCCCC
Confidence 99999999999888777777765321 01122222223333332222333 456677888888888842 1
Q ss_pred --------hhHhHHHHHHHHHHHhhhCC
Q 014945 212 --------AKLSMLRNATWTLSNFCRGK 231 (415)
Q Consensus 212 --------~~~~~~~~a~~~l~~l~~~~ 231 (415)
.+......++.++.|+....
T Consensus 206 ~n~~~l~pqe~n~a~EaLK~~FNvt~~~ 233 (532)
T KOG4464|consen 206 INVPPLNPQETNRACEALKVFFNVTCDS 233 (532)
T ss_pred cCCCCCCHHHHHHHHHHHHHHhheeecc
Confidence 12234455666677777665
No 297
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=84.28 E-value=22 Score=29.26 Aligned_cols=82 Identities=20% Similarity=0.233 Sum_probs=60.0
Q ss_pred hhchHHHHHHhhcCCChhHHHHHHHHHHHhccC-ChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHH
Q 014945 239 TRPALPALERLIHSNDDEVLTDACWALSYLSDG-TNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQ 317 (415)
Q Consensus 239 ~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~-~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~ 317 (415)
....+|.+++-|...+...+--|...+..+... ..+.+-.++ ..++..|...|.+.++.+...++.+|..++...+..
T Consensus 36 y~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvl-PqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~v 114 (183)
T PF10274_consen 36 YHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVL-PQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMV 114 (183)
T ss_pred hhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhh
Confidence 467889999999887777677777777777655 444443333 356777888889999999999999999997766543
Q ss_pred HHHH
Q 014945 318 TQCI 321 (415)
Q Consensus 318 ~~~~ 321 (415)
-..+
T Consensus 115 G~aL 118 (183)
T PF10274_consen 115 GEAL 118 (183)
T ss_pred hHHH
Confidence 3333
No 298
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=84.27 E-value=2.4 Score=37.57 Aligned_cols=133 Identities=17% Similarity=0.133 Sum_probs=76.5
Q ss_pred hhHhHHHHHHHHHHHhhhCCCCCchhhh--h-chHHHHHHhhcCC---ChhHHHHHHHHHHHhccCChHHH-HHHHHcCc
Q 014945 212 AKLSMLRNATWTLSNFCRGKPQPLFEQT--R-PALPALERLIHSN---DDEVLTDACWALSYLSDGTNDKI-QAVIEAGV 284 (415)
Q Consensus 212 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~--~-~~l~~l~~lL~~~---d~~v~~~a~~~l~~l~~~~~~~~-~~~~~~~~ 284 (415)
.....+.-++.+++|+............ . .++..+.....+. +..++..++..+.|++....... ..-....+
T Consensus 122 ~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~l 201 (268)
T PF08324_consen 122 SPPANQMLALRLLANLFSHPPGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSEL 201 (268)
T ss_dssp SSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHH
T ss_pred CcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 4667788899999999987544433222 2 2333444433433 78899999999999863211100 00001124
Q ss_pred HHHHHHhcC-C-CChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHH
Q 014945 285 CPRLVELLR-H-PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKK 344 (415)
Q Consensus 285 i~~L~~lL~-~-~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~ 344 (415)
+..+.+.+. . .+++....++-++|+++...+.........|+-..+...-....+++++.
T Consensus 202 l~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~ri~~ 263 (268)
T PF08324_consen 202 LSSIIEVLSREESDEEALYRLLVALGTLLSSSDSAKQLAKSLDVKSVLSKKANKSKEPRIKE 263 (268)
T ss_dssp HHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHHHHHCCCCTHHHHHHHHHHHTTSHHHHH
T ss_pred HHHHHHHhccccCCHHHHHHHHHHHHHHhccChhHHHHHHHcChHHHHHHHHhcccchHHHH
Confidence 556666432 2 57889999999999999776654443333345544444443332444444
No 299
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=84.02 E-value=11 Score=33.72 Aligned_cols=117 Identities=10% Similarity=0.124 Sum_probs=74.9
Q ss_pred cHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHH-HHHHHCCChHHHHHHh----c-------CCCccchHHHHHHHHH
Q 014945 284 VCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQT-QCIINHQALPCLLDLL----T-------QNYKKSIKKEACWTIS 351 (415)
Q Consensus 284 ~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~-~~~~~~~~l~~L~~ll----~-------~~~~~~v~~~a~~~l~ 351 (415)
++|.++.++.+.++.++..++.++..+....+... ..+...|..+.+.+.+ . ..++..+-..+.-++.
T Consensus 120 iiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~ 199 (282)
T PF10521_consen 120 IIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALL 199 (282)
T ss_pred HHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHH
Confidence 68999999999999999999999999998655333 2255667665544433 2 0114556677777777
Q ss_pred HHhc--------CCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhCCCC
Q 014945 352 NITA--------GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGS 400 (415)
Q Consensus 352 nl~~--------~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~ 400 (415)
.++. ........++..|++..+...-....++++...+..+..+...-.
T Consensus 200 ~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lG 256 (282)
T PF10521_consen 200 SLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELG 256 (282)
T ss_pred HHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhc
Confidence 7732 123334444555555554444333457888777777777765433
No 300
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=83.80 E-value=18 Score=28.03 Aligned_cols=74 Identities=16% Similarity=0.111 Sum_probs=57.2
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhcCC-CchhHHHHHhcCChHHHHHHhccchhHh-HHHHHHHHHHHhhhCC
Q 014945 158 AVPIFVRLLSSPTDDVREQAVWALGNVAGD-SPKCRDLVLSNGALMPLLAQFNEHAKLS-MLRNATWTLSNFCRGK 231 (415)
Q Consensus 158 ~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~-~~~~~~~~~~~g~i~~L~~~l~~~~~~~-~~~~a~~~l~~l~~~~ 231 (415)
++..|.+-|.++++.++..|+..|-.+..+ ++.++..+...+++..|..++....+.. ++..++..+..-....
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f 113 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAF 113 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHH
Confidence 466677788889999999999999999876 4557788888889999999886554444 8888877777666543
No 301
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=82.89 E-value=54 Score=32.77 Aligned_cols=135 Identities=16% Similarity=0.114 Sum_probs=81.4
Q ss_pred ChHHHHHHhccc---hhHhHHHHHHHHHHHhhhCC----CCCchhhhhchHHHHHHhhc----CCChhHHHHHHHHHHHh
Q 014945 200 ALMPLLAQFNEH---AKLSMLRNATWTLSNFCRGK----PQPLFEQTRPALPALERLIH----SNDDEVLTDACWALSYL 268 (415)
Q Consensus 200 ~i~~L~~~l~~~---~~~~~~~~a~~~l~~l~~~~----~~~~~~~~~~~l~~l~~lL~----~~d~~v~~~a~~~l~~l 268 (415)
.+..+..++... .+..+...++.+++.+.... +.........+++.+...|. ..|.+.+...+.+|+|+
T Consensus 394 ~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~ 473 (574)
T smart00638 394 ILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNA 473 (574)
T ss_pred HHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhcc
Confidence 345566666322 24556677777777666432 21112233556666665553 35666677889999998
Q ss_pred ccCChHHHHHHHHcCcHHHHHHhcC---CCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcC-CCccchHH
Q 014945 269 SDGTNDKIQAVIEAGVCPRLVELLR---HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQ-NYKKSIKK 344 (415)
Q Consensus 269 ~~~~~~~~~~~~~~~~i~~L~~lL~---~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~~v~~ 344 (415)
.... .+..+..++. ..+..+|..|+++|..++...+... -+.++.++.+ .+++++|.
T Consensus 474 g~~~-----------~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v--------~~~l~~i~~n~~e~~EvRi 534 (574)
T smart00638 474 GHPS-----------SIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKV--------QEVLLPIYLNRAEPPEVRM 534 (574)
T ss_pred CChh-----------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHH--------HHHHHHHHcCCCCChHHHH
Confidence 6422 1233444443 2346799999999999986555433 3456666644 34678888
Q ss_pred HHHHHHHHH
Q 014945 345 EACWTISNI 353 (415)
Q Consensus 345 ~a~~~l~nl 353 (415)
.|+.+|...
T Consensus 535 aA~~~lm~t 543 (574)
T smart00638 535 AAVLVLMET 543 (574)
T ss_pred HHHHHHHhc
Confidence 888777543
No 302
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=82.37 E-value=57 Score=38.17 Aligned_cols=230 Identities=13% Similarity=0.097 Sum_probs=120.7
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhcCCCchhHH---HHH--hcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCch
Q 014945 162 FVRLLSSPTDDVREQAVWALGNVAGDSPKCRD---LVL--SNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLF 236 (415)
Q Consensus 162 L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~---~~~--~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~ 236 (415)
+..++...+++++..+..++..+....+.+++ ... ....+..+..+-..++++.++......+. . .....
T Consensus 486 ~~~~~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~---~--~~~~~ 560 (2341)
T KOG0891|consen 486 VDSYLEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIADTDPDIRIRVLSSLN---E--RFDAQ 560 (2341)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccCCCcchhhhHHhhhc---c--chhhh
Confidence 33455667888888886666655433322100 001 11233444444334445554433333222 0 11111
Q ss_pred hhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChH
Q 014945 237 EQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM 316 (415)
Q Consensus 237 ~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~ 316 (415)
..-...+..+...+++..-.++..+...+++++..++...-..+..-.+..+-.+..+....+...+..-+..+..+.+.
T Consensus 561 laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~~ 640 (2341)
T KOG0891|consen 561 LAQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELIISSPV 640 (2341)
T ss_pred hcCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHHHHH
Confidence 11123344455555666677888888888888887763322222222222222222222222222233333333333333
Q ss_pred HHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhcc-CCHHHHHHHHHHHHHH
Q 014945 317 QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN-AEFEIKKEAAWAISNA 395 (415)
Q Consensus 317 ~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~-~~~~v~~~a~~aL~nl 395 (415)
.....++ ..+..++..+.++ ++.+-+.+..+++.+|.-+.+......+ ..++.+.+.+.+ +...-+..+.+++.++
T Consensus 641 ~i~~~v~-~~l~~~~~~~~~~-~s~~~~~~~~~~~eL~~v~g~~~~~~~~-~~~~~~~~~l~~~s~~~rr~aslk~l~~l 717 (2341)
T KOG0891|consen 641 LISPYVG-PILLVLLPKLQDP-SSGVEKAVLETIGELCAVGGEEMVKWVD-ELFSLIIKMLQDQSSLGKRLAALKALGQL 717 (2341)
T ss_pred HHHhhcC-chHHHHHHHHhcc-chhhHHHHHHHHHHHHHhccchhhhccc-hHHHHHHHHHHHhhhhhchhHHHHHhhhh
Confidence 3332222 4557777888888 8889999999999999833333333334 456666666654 5677788999999999
Q ss_pred hCCC
Q 014945 396 TSGG 399 (415)
Q Consensus 396 ~~~~ 399 (415)
....
T Consensus 718 ~s~~ 721 (2341)
T KOG0891|consen 718 ESST 721 (2341)
T ss_pred hccc
Confidence 8653
No 303
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=81.49 E-value=21 Score=27.99 Aligned_cols=74 Identities=15% Similarity=0.112 Sum_probs=56.1
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhcCCC-chhHHHHHhcCChHHHHHHhccchhHh---HHHHHHHHHHHhhhCC
Q 014945 158 AVPIFVRLLSSPTDDVREQAVWALGNVAGDS-PKCRDLVLSNGALMPLLAQFNEHAKLS---MLRNATWTLSNFCRGK 231 (415)
Q Consensus 158 ~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~-~~~~~~~~~~g~i~~L~~~l~~~~~~~---~~~~a~~~l~~l~~~~ 231 (415)
++..|.+-|.+.++.++..|+..|-.+..++ +.++..+....++..|..++....... ++..++..+.......
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f 120 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAF 120 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHH
Confidence 4667788888899999999999999988765 567777777778888888885444333 7888877776666543
No 304
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=81.36 E-value=42 Score=30.46 Aligned_cols=154 Identities=12% Similarity=0.062 Sum_probs=80.3
Q ss_pred hHHHHHHHHHHHHHhCCCchhhHHHHhCC-----------ChHHHHHhhC------CCCHHHHHHHHHHHHHhcCCCchh
Q 014945 129 PQLQFEAAWALTNIASGTSENTRVVIDHG-----------AVPIFVRLLS------SPTDDVREQAVWALGNVAGDSPKC 191 (415)
Q Consensus 129 ~~i~~~a~~~L~~l~~~~~~~~~~~~~~g-----------~i~~L~~ll~------~~~~~v~~~a~~~L~nl~~~~~~~ 191 (415)
-++|..|+.|+.....++++.+..+++.- ....++..|- +.|+.-.--|+.+|.++..+++..
T Consensus 52 f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy~~wfAa~il~hll~dn~~~ 131 (312)
T PF04869_consen 52 FDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPYRCWFAAVILMHLLRDNPEA 131 (312)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HHHHHHHHHHHHHHHTT-HHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHHHHHHHHHHHHHHHhcCHHH
Confidence 68999999999999999888887776531 0111222222 112222223444444444444433
Q ss_pred HHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhc-----CCChhHHHHHHHHHH
Q 014945 192 RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH-----SNDDEVLTDACWALS 266 (415)
Q Consensus 192 ~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~-----~~d~~v~~~a~~~l~ 266 (415)
++.... + ........ ......++.+..+|. +.|+.++..-+..|.
T Consensus 132 Ke~al~-------------------------V-~~~~~~~g----e~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~ 181 (312)
T PF04869_consen 132 KEQALR-------------------------V-TEGDESSG----EEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLI 181 (312)
T ss_dssp HHHHTT----------------------------EE--STT----S--EEHHHHHHHHTTT----T--HHHHHHHHHHHH
T ss_pred HHHHHc-------------------------c-cCCCCCCC----CCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHH
Confidence 333221 1 00111111 111223444444432 446777777777777
Q ss_pred HhccCChHHHHHHHHc-CcHHHHHHhcC---CCChhhHHHHHHHHHHhhc
Q 014945 267 YLSDGTNDKIQAVIEA-GVCPRLVELLR---HPSPSVLIPALRTVGNIVT 312 (415)
Q Consensus 267 ~l~~~~~~~~~~~~~~-~~i~~L~~lL~---~~~~~v~~~a~~~l~nl~~ 312 (415)
....+++.....+++. ..++.|++... +.+..++--++..||-...
T Consensus 182 ~WL~e~p~AV~~FL~~~s~l~~Li~~~~~~~~~~~~VqGL~A~LLGicye 231 (312)
T PF04869_consen 182 VWLFECPDAVNDFLSEGSNLQSLIEFSNQSSSEDVLVQGLCAFLLGICYE 231 (312)
T ss_dssp HHHTT-HHHHHHHHCSTTHHHHHHHHHS--TCCCHHHHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHcCcchHHHHHHHhhcCCCCcchHHHHHHHHHHHHHH
Confidence 7777777777778777 47888988753 2345566666667776654
No 305
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=80.91 E-value=11 Score=29.54 Aligned_cols=100 Identities=16% Similarity=0.154 Sum_probs=55.9
Q ss_pred hHHHHHHhhcCCChhHHHHHHHHHHHhc-cCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHH
Q 014945 242 ALPALERLIHSNDDEVLTDACWALSYLS-DGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQC 320 (415)
Q Consensus 242 ~l~~l~~lL~~~d~~v~~~a~~~l~~l~-~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~ 320 (415)
-...++.+|+.+...-....+..|.+=. .+-++ ..-++.+++..++.-=.....--...|+..||.+..|..
T Consensus 23 Qt~~lielLk~~~~~~~~~lldLL~~RV~PGVD~--AA~VKA~FL~~ia~g~~~~~~Is~~~Av~LLGtM~GGYN----- 95 (154)
T PF11791_consen 23 QTAELIELLKNPPAGEEAFLLDLLTNRVPPGVDE--AAYVKAEFLAAIAKGEISSPLISPAEAVELLGTMLGGYN----- 95 (154)
T ss_dssp HHHHHHHHHHS--TT-HHHHHHHHHHSS--TT-H--HHHHHHHHHHHHHTTSS-BTTB-HHHHHHHHTTS-SSTT-----
T ss_pred HHHHHHHHHhCCCCccHHHHHHHHHhcCCCCCCh--HHHHHHHHHHHHHcCCccCCCcCHHHHHHHHhhccCCCc-----
Confidence 3445667776655443344445555433 22222 224455555555554333333446678899998887754
Q ss_pred HHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhc
Q 014945 321 IINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 355 (415)
Q Consensus 321 ~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~ 355 (415)
+..|+.+|.+. +..+...|+.+|.+-.-
T Consensus 96 ------V~~LI~~L~~~-d~~lA~~Aa~aLk~TlL 123 (154)
T PF11791_consen 96 ------VQPLIDLLKSD-DEELAEEAAEALKNTLL 123 (154)
T ss_dssp ------HHHHHHGG--G--TTTHHHHHHHHHT--T
T ss_pred ------HHHHHHHHcCC-cHHHHHHHHHHHHhhHH
Confidence 67899999888 99999999999997664
No 306
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.47 E-value=29 Score=32.13 Aligned_cols=120 Identities=12% Similarity=0.140 Sum_probs=88.9
Q ss_pred HHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhc-CCHHHHHH
Q 014945 285 CPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA-GNVNQIQA 363 (415)
Q Consensus 285 i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~-~~~~~~~~ 363 (415)
+.-|+.-+++.+..++..|+..+-.+....+.... .--..+++.+..++.+. +..+|.....++-.+.. ..++....
T Consensus 60 lkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l~-~~~~~ll~~~~~~i~D~-~~~vR~~~~qll~~~i~~~~~e~~sp 137 (393)
T KOG2149|consen 60 LKELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQ-SHLYALLQKLRELILDD-DSLVRDALYQLLDSLILPACKEDQSP 137 (393)
T ss_pred HHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHH-HHHHHHHHHhhhhhcCc-cccHHHHHHHHHHHHHhhcchhhhcc
Confidence 56678888999999999999999888876443332 11225677788888888 89999999998888665 34444333
Q ss_pred HHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCHHHHHHH
Q 014945 364 IIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKYK 407 (415)
Q Consensus 364 l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l 407 (415)
++.- +++.+...|.+-.+++|.-++..|.-++...++....+.
T Consensus 138 ~~~l-~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~~~~ 180 (393)
T KOG2149|consen 138 MVSL-LMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFSRYA 180 (393)
T ss_pred hHHH-HHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHHHHH
Confidence 3332 567777788888999999999999999988776665443
No 307
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=80.34 E-value=18 Score=38.57 Aligned_cols=237 Identities=19% Similarity=0.220 Sum_probs=124.5
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHH--------HHhhcCCCChHHHHHHHHHHHHH
Q 014945 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRF--------IEFLSRDDFPQLQFEAAWALTNI 142 (415)
Q Consensus 71 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L--------~~ll~~~~~~~i~~~a~~~L~~l 142 (415)
+.+..|++.+-+.....|.-++.+++.++...........++.-++..+ -++..+.-...++..++|+|+.+
T Consensus 77 s~~e~L~~~~~~~~we~rhg~~i~lrei~~~h~~~~~~~~led~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L~~~ 156 (1549)
T KOG0392|consen 77 SFLEELVNDLFEPQWEIRHGAAIALREILKTHGDSLSYELLEDLLIRLLCVLALDRFGDFISDNVVAPVREACAQALGAY 156 (1549)
T ss_pred HHHHHHHHHhcCchhhhhcCcchhhhhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHH
Confidence 4567888888899999999999999998765422222222222222211 12222111246888899999887
Q ss_pred hCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHh--cCChHHHHHHhccchhHhHHHHH
Q 014945 143 ASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLS--NGALMPLLAQFNEHAKLSMLRNA 220 (415)
Q Consensus 143 ~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~--~g~i~~L~~~l~~~~~~~~~~~a 220 (415)
..+-.+.. +. ..++.+.+++..++-+++.-.+..+..... ..++.+.. ..+++..+.-| .+.+.+++..|
T Consensus 157 l~~~~~s~--~~--~~~~il~q~~~q~~w~ir~Ggll~iky~~a---ir~d~l~~~~~~vl~~~i~~L-~ds~ddv~~~a 228 (1549)
T KOG0392|consen 157 LKHMDESL--IK--ETLDILLQMLRQPNWEIRHGGLLGIKYNVA---IRQDLLFQLLNLVLDFVIEGL-EDSDDDVRSVA 228 (1549)
T ss_pred HHhhhhHh--hH--HHHHHHHHHHcCcchhheechHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhh-hhcchHHHHHH
Confidence 76422221 11 246677777776655555444444332211 11122211 01233333444 55667777777
Q ss_pred HHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCCh-hH-HHHHHHHHHHhccCChHH---HHHHHHcCcHHHHHHhcCCC
Q 014945 221 TWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDD-EV-LTDACWALSYLSDGTNDK---IQAVIEAGVCPRLVELLRHP 295 (415)
Q Consensus 221 ~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~-~v-~~~a~~~l~~l~~~~~~~---~~~~~~~~~i~~L~~lL~~~ 295 (415)
..++.-.....+......+..++..+...+..-|. .- .......+..++...+.. .+.-...|+++.+..++.+.
T Consensus 229 a~~l~~~~s~~v~l~~~~i~~lv~~l~~~l~~lddl~~s~~si~~ll~~l~~~~evl~l~~~~n~~~~Lvp~~~p~l~~~ 308 (1549)
T KOG0392|consen 229 AQFLVPAPSIQVKLMVQKIAKLVHTLWSFLLELDDLSSSTASIMHLLDELCIENEVLDLFEQQNLEVGLVPRLWPFLRHT 308 (1549)
T ss_pred HHHhhhhhHHHHhhhHhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhhHHHHHHHHHhhhhhccchhhHHHHHHH
Confidence 77776665543222222233334444333322211 00 011112223333332110 11122348999999999988
Q ss_pred ChhhHHHHHHHHHHhhcCCh
Q 014945 296 SPSVLIPALRTVGNIVTGDD 315 (415)
Q Consensus 296 ~~~v~~~a~~~l~nl~~~~~ 315 (415)
-..++..++..+..+....+
T Consensus 309 i~sv~~a~l~~l~~lle~~~ 328 (1549)
T KOG0392|consen 309 ISSVRRAALETLAMLLEADD 328 (1549)
T ss_pred HHHHHHHHHHHHHHHHhcCC
Confidence 78888899999888876543
No 308
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=80.18 E-value=24 Score=26.89 Aligned_cols=99 Identities=15% Similarity=0.110 Sum_probs=64.3
Q ss_pred CCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhc-CCHHHHHHHHH-cCCH
Q 014945 293 RHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA-GNVNQIQAIIE-AGII 370 (415)
Q Consensus 293 ~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~-~~~~~~~~l~~-~~~i 370 (415)
+++++..--..+.-|++++..+..... .+.+.|.+-|++. ++.|+..+..+|-.+|. |++.....+.. ..+|
T Consensus 11 sdd~~p~pgy~~~Eia~~t~~s~~~~~-----ei~d~L~kRL~~~-~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~I 84 (122)
T cd03572 11 SDDDEPTPGYLYEEIAKLTRKSVGSCQ-----ELLEYLLKRLKRS-SPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQI 84 (122)
T ss_pred cCCCCCCchHHHHHHHHHHHcCHHHHH-----HHHHHHHHHhcCC-CCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHH
Confidence 333333444555566677766554444 3456899999988 89999999999999998 66666666654 3345
Q ss_pred HHHHHHhccCC--------HHHHHHHHHHHHHHhC
Q 014945 371 GPLVNLLLNAE--------FEIKKEAAWAISNATS 397 (415)
Q Consensus 371 ~~L~~~l~~~~--------~~v~~~a~~aL~nl~~ 397 (415)
..+.++-...| ..||..|-.++.-+..
T Consensus 85 k~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~if~ 119 (122)
T cd03572 85 RECANYKGPPDPLKGDSLNEKVREEAQELIKAIFS 119 (122)
T ss_pred HHHHHcCCCCCcccCcchhHHHHHHHHHHHHHHhc
Confidence 55544433122 2588888877776654
No 309
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=80.14 E-value=51 Score=30.79 Aligned_cols=153 Identities=16% Similarity=0.082 Sum_probs=88.1
Q ss_pred HHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhh----------cCCChhHHHHHHHHHHHhccCC
Q 014945 203 PLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLI----------HSNDDEVLTDACWALSYLSDGT 272 (415)
Q Consensus 203 ~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL----------~~~d~~v~~~a~~~l~~l~~~~ 272 (415)
.++..|.+......+..++.++.-|++.............+..|+.+- ...|.++...++.+|+|+.-++
T Consensus 49 ~i~~Vle~~~p~t~~v~~LetvrILSRdk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlvf~S 128 (532)
T KOG4464|consen 49 RIFEVLENGEPLTHRVVCLETVRILSRDKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLVFHS 128 (532)
T ss_pred HHHHHHhcCCCchhhhhHHHHHHHHhccccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHHhcc
Confidence 445555333334455566666666666654333333334444443332 1235688999999999999888
Q ss_pred hHHHHHHHHcCcHHHHHHhcCCC-----ChhhHHHHHHHHHHhhc-CChHHHHHHHHCCChHHHHHHhcCCC--------
Q 014945 273 NDKIQAVIEAGVCPRLVELLRHP-----SPSVLIPALRTVGNIVT-GDDMQTQCIINHQALPCLLDLLTQNY-------- 338 (415)
Q Consensus 273 ~~~~~~~~~~~~i~~L~~lL~~~-----~~~v~~~a~~~l~nl~~-~~~~~~~~~~~~~~l~~L~~ll~~~~-------- 338 (415)
+...+.+.+......+.+.+... ...+...=++.|--+.. ..+...+.+.+.++++.+-+.+.++.
T Consensus 129 q~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~lgidse~n~ 208 (532)
T KOG4464|consen 129 QRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDKLGIDSEINV 208 (532)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhccccCCCCcCC
Confidence 87777777777777766665311 11122222222222221 12445566667799999999886541
Q ss_pred ------ccchHHHHHHHHHHHhc
Q 014945 339 ------KKSIKKEACWTISNITA 355 (415)
Q Consensus 339 ------~~~v~~~a~~~l~nl~~ 355 (415)
+.....++..++.|++.
T Consensus 209 ~~l~pqe~n~a~EaLK~~FNvt~ 231 (532)
T KOG4464|consen 209 PPLNPQETNRACEALKVFFNVTC 231 (532)
T ss_pred CCCCHHHHHHHHHHHHHHhheee
Confidence 11344677777888876
No 310
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=79.93 E-value=41 Score=34.21 Aligned_cols=92 Identities=15% Similarity=0.153 Sum_probs=64.6
Q ss_pred HHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHH
Q 014945 285 CPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAI 364 (415)
Q Consensus 285 i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l 364 (415)
+..|-..+. .+..|..++..|+.++...+...-.+.+..+++.|+++|....+..+...|+.+|.-+.=.-+......
T Consensus 72 ~~~l~~~~~--~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~l~~~ 149 (668)
T PF04388_consen 72 FDKLNDYFV--KPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPSSLGPH 149 (668)
T ss_pred HHHHHHHHc--CchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccchhhHH
Confidence 344444444 345789999999999999888888899999999999999887577777788888877764333333332
Q ss_pred HHcCCHHHHHHHhcc
Q 014945 365 IEAGIIGPLVNLLLN 379 (415)
Q Consensus 365 ~~~~~i~~L~~~l~~ 379 (415)
+. .++..+..++.+
T Consensus 150 L~-~Lf~If~Rl~~W 163 (668)
T PF04388_consen 150 LP-DLFNIFGRLLSW 163 (668)
T ss_pred HH-HHHHHHHHHHHc
Confidence 22 245555555543
No 311
>KOG1988 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.68 E-value=79 Score=32.58 Aligned_cols=251 Identities=14% Similarity=0.128 Sum_probs=140.7
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHH
Q 014945 74 PAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVV 153 (415)
Q Consensus 74 ~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~ 153 (415)
..+=..++++....+..+...+-++.... +.+ .++.+ .+=.|...+..++ ..+|...+++... + ..+...+
T Consensus 27 ~~ldkGlr~~~t~eqpeavvr~~RLFek~-Pfp--ifiNs-~llrLaDaF~~Gn-~llRf~V~rv~~q--~--g~hln~v 97 (970)
T KOG1988|consen 27 MELDKGLRSGKTSEQPEAVVRFPRLFEKY-PFP--IFINS-QLLRLADAFPVGN-NLLRFAVLRVDQQ--S--GKHLNKV 97 (970)
T ss_pred HHHhhcccccccccchHHHHHHHHHHhhC-Cch--hhhhH-HHHHHHHHhccCc-HHHHHHHHHHHhh--c--cccchhh
Confidence 34445666666666667777666665433 222 23322 2334555566667 6788877777763 1 1222223
Q ss_pred Hh-CCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCC
Q 014945 154 ID-HGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP 232 (415)
Q Consensus 154 ~~-~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~ 232 (415)
.. ...+..+.....+.|+.-+..++..++.++.--| +.+-...++..=..+.+.--.+.++.+...++....
T Consensus 98 ~n~aE~lrri~~V~hsnDp~aRAllL~ilg~~s~lip-------Efn~~hhlIr~sl~S~helE~eaa~~Aaa~Faa~sk 170 (970)
T KOG1988|consen 98 LNGAEFLRRIFYVDHSNDPVARALLLRILGQLSALIP-------EFNQVHHLIRISLDSHHELEVEAAEFAAACFAAQSK 170 (970)
T ss_pred hhhhhhhheeEEeecCCCHHHHHHHHHHHHHhhhhcc-------cccchhHHHHHHhcCccchhhHHHHHHHhhhhhhhh
Confidence 22 2344444445567889999999999998764333 333445555543244444445666666666664421
Q ss_pred CCchhhhhchHHHHHHhhcCCC--hhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcC-CCChhhHHHHHHHHHH
Q 014945 233 QPLFEQTRPALPALERLIHSND--DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR-HPSPSVLIPALRTVGN 309 (415)
Q Consensus 233 ~~~~~~~~~~l~~l~~lL~~~d--~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~-~~~~~v~~~a~~~l~n 309 (415)
.....+.-.+..++...+ ++..-.++.+++.+....... ..+.....+++. .+..+....-+.++.+
T Consensus 171 ----~FA~si~gkis~mIef~d~~~~mkL~li~Vfs~M~c~at~A------~ra~~l~m~lv~~tps~d~~v~fL~stT~ 240 (970)
T KOG1988|consen 171 ----DFACSICGKISDMIEFLDLPVPMKLSLIPVFSHMHCHATGA------SRAFGLCMSLVSGTPSIDRVVAFLYSTTN 240 (970)
T ss_pred ----hhHHHHHHHHHHHhhcccCCCCcchhHhHHHHHhcchhhhh------HHHHHHHHHHhcCCCcccceeeehhhhHH
Confidence 122233344455555443 445566777787776443221 223455566653 3344555566677777
Q ss_pred hhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhc
Q 014945 310 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 355 (415)
Q Consensus 310 l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~ 355 (415)
++...-..+ .+-++.+.+.++.++...++..+.|.+.+++.
T Consensus 241 Lasrs~~ai-----~eq~d~l~q~~ked~~kivr~~vl~kl~~La~ 281 (970)
T KOG1988|consen 241 LASRSLVAI-----SEQSDVLLQFLKEDERKIVRLKVLRKLDFLAK 281 (970)
T ss_pred HHHHHHHHh-----HHHHHHHHHhhcCCchhHHHHHHHHHHHHHhh
Confidence 775322211 24567788888765466778888888887764
No 312
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=79.38 E-value=87 Score=32.91 Aligned_cols=128 Identities=17% Similarity=0.238 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHh
Q 014945 86 NIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRL 165 (415)
Q Consensus 86 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~l 165 (415)
.++-.+...+.++.-.. ... ....+|.|++-|.-.+...+|...+-+++.+|... +. ++ .-.+|.+..-
T Consensus 946 ~vra~~vvTlakmcLah-~~L-----aKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~Y---Ta-m~-d~YiP~I~~~ 1014 (1529)
T KOG0413|consen 946 KVRAVGVVTLAKMCLAH-DRL-----AKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSY---TA-MT-DRYIPMIAAS 1014 (1529)
T ss_pred HHHHHHHHHHHHHHhhh-hHH-----HHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHH---HH-HH-HHhhHHHHHH
Confidence 34455666677764332 111 22358999998887664677877777888877642 11 11 2468999999
Q ss_pred hCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCC--hHHHHHHhccchhHhHHHHHHHHHHHhhhCC
Q 014945 166 LSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGA--LMPLLAQFNEHAKLSMLRNATWTLSNFCRGK 231 (415)
Q Consensus 166 l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~--i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~ 231 (415)
|.++++-++.+++-.|.+|... +.+...|. +..++.++ +.+++++..+=++++.+....
T Consensus 1015 L~Dp~~iVRrqt~ilL~rLLq~-----~~vKw~G~Lf~Rf~l~l~--D~~edIr~~a~f~~~~vL~~~ 1075 (1529)
T KOG0413|consen 1015 LCDPSVIVRRQTIILLARLLQF-----GIVKWNGELFIRFMLALL--DANEDIRNDAKFYISEVLQSE 1075 (1529)
T ss_pred hcCchHHHHHHHHHHHHHHHhh-----hhhhcchhhHHHHHHHHc--ccCHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999633 22333332 33344443 567889999999999988764
No 313
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=78.96 E-value=35 Score=28.09 Aligned_cols=118 Identities=8% Similarity=0.037 Sum_probs=72.7
Q ss_pred CcHHHHHHhcCCCChhhHHHHHHHHHHhhcC-ChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHH
Q 014945 283 GVCPRLVELLRHPSPSVLIPALRTVGNIVTG-DDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQI 361 (415)
Q Consensus 283 ~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~-~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~ 361 (415)
-.++.+++-|...+...+-.|...+..+... ..+.+-.++. .++..+...|.+. ++++...+..+|..++..++..-
T Consensus 38 ~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlP-qLI~plk~AL~tr-~~~V~~~~L~~Lq~Lv~~~~~vG 115 (183)
T PF10274_consen 38 HYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLP-QLIIPLKRALNTR-DPEVFCATLKALQQLVTSSDMVG 115 (183)
T ss_pred hHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHH-HHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHhhhhhh
Confidence 3567788888877777777777777777665 3333332332 6788888899999 99999999999999965333322
Q ss_pred HHHHHc--CCHHHHHHHhc-----------cCCHHHHHHHHHHHHHHhCCCCHH
Q 014945 362 QAIIEA--GIIGPLVNLLL-----------NAEFEIKKEAAWAISNATSGGSNE 402 (415)
Q Consensus 362 ~~l~~~--~~i~~L~~~l~-----------~~~~~v~~~a~~aL~nl~~~~~~~ 402 (415)
..++.. .++|.+--+.. .....+......+|..+-..|.++
T Consensus 116 ~aLvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~d 169 (183)
T PF10274_consen 116 EALVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGPD 169 (183)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcChh
Confidence 333221 13333321111 122455666666777776655443
No 314
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=78.26 E-value=69 Score=31.40 Aligned_cols=173 Identities=11% Similarity=0.062 Sum_probs=100.6
Q ss_pred CCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhc--c--------chhHhHHHHHHHHHHHhhhCCCCCchh
Q 014945 168 SPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN--E--------HAKLSMLRNATWTLSNFCRGKPQPLFE 237 (415)
Q Consensus 168 ~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~--~--------~~~~~~~~~a~~~l~~l~~~~~~~~~~ 237 (415)
+++..|...|-..|..+..+-+ +...+..|..+.. . .-++.++..++..| ++.. ....
T Consensus 248 d~~~~V~~~ae~~LKr~~~~~e-------d~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L---~kS~--~Aa~ 315 (501)
T PF13001_consen 248 DSNSSVSDRAEDLLKRLSVSLE-------DPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLL---SKSV--IAAT 315 (501)
T ss_pred CCcchHHHHHHHHHhhcCCCCC-------CHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHH---HHhH--HHHh
Confidence 3567788888888888775521 1124555666552 1 12444554444443 3321 0011
Q ss_pred hhhchHHHHHHhhcCC--ChhHHHHHHHHH---HHhccCChHHHHHHHHcCcHHHHHHhcC--------CCChhhHHHHH
Q 014945 238 QTRPALPALERLIHSN--DDEVLTDACWAL---SYLSDGTNDKIQAVIEAGVCPRLVELLR--------HPSPSVLIPAL 304 (415)
Q Consensus 238 ~~~~~l~~l~~lL~~~--d~~v~~~a~~~l---~~l~~~~~~~~~~~~~~~~i~~L~~lL~--------~~~~~v~~~a~ 304 (415)
.....+..+...+.++ +..++..++..+ .+.........-..+...+...+...+. ..+...+..+.
T Consensus 316 ~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aY 395 (501)
T PF13001_consen 316 SFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAY 395 (501)
T ss_pred CCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHH
Confidence 1133444555556655 566776766666 5544433322222222333333333442 34567899999
Q ss_pred HHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhc
Q 014945 305 RTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 355 (415)
Q Consensus 305 ~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~ 355 (415)
.+||.++...+.... -+.+++..|..-|..+ .++++...-.+|+.++.
T Consensus 396 e~lG~L~~~~p~l~~--~d~~li~~LF~sL~~~-~~evr~sIqeALssl~~ 443 (501)
T PF13001_consen 396 ETLGLLAKRAPSLFS--KDLSLIEFLFDSLEDE-SPEVRVSIQEALSSLAP 443 (501)
T ss_pred HHHHHHHccCccccc--ccHHHHHHHHHHhhCc-chHHHHHHHHHHHHHHH
Confidence 999999998775421 2347788899988777 89999988888888885
No 315
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=78.06 E-value=39 Score=28.45 Aligned_cols=139 Identities=14% Similarity=0.150 Sum_probs=79.9
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCC-CChhhHHHH-HHHHHHhhcCChHHHHHH
Q 014945 244 PALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-PSPSVLIPA-LRTVGNIVTGDDMQTQCI 321 (415)
Q Consensus 244 ~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~-~~~~v~~~a-~~~l~nl~~~~~~~~~~~ 321 (415)
..+..+..++..+.+.-++.++.......+.. .++.+-.++.. +++.+.... ..+++.+....
T Consensus 54 ~l~~~L~~~~~~E~~~la~~il~~~~~~~~~~--------~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~------- 118 (213)
T PF08713_consen 54 ELADELWESGYREERYLALLILDKRRKKLTEE--------DLELLEKWLPDIDNWATCDSLCSKLLGPLLKKH------- 118 (213)
T ss_dssp HHHHHHHCSSCHHHHHHHHHHHHHCGGG--HH--------HHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHHH-------
T ss_pred HHHHHHcCCchHHHHHHHHHHhHHHhhhhhHH--------HHHHHHHHhccCCcchhhhHHHHHHHHHHHHhh-------
Confidence 34445666666777766666665433221111 23455555543 355555554 34455543221
Q ss_pred HHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCH
Q 014945 322 INHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSN 401 (415)
Q Consensus 322 ~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~ 401 (415)
....+.+...+.++ ++-++..++-++........ ... ++..+...+.++++.|++...|+|..++...+.
T Consensus 119 --~~~~~~~~~W~~s~-~~w~rR~~~v~~~~~~~~~~--~~~-----~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~ 188 (213)
T PF08713_consen 119 --PEALELLEKWAKSD-NEWVRRAAIVMLLRYIRKED--FDE-----LLEIIEALLKDEEYYVQKAIGWALREIGKKDPD 188 (213)
T ss_dssp --GGHHHHHHHHHHCS-SHHHHHHHHHCTTTHGGGCH--HHH-----HHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HH
T ss_pred --HHHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHhcC--HHH-----HHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHH
Confidence 24566778888888 88888887766665554311 111 344445556778889999999999999988544
Q ss_pred HHHHHH
Q 014945 402 EQIKYK 407 (415)
Q Consensus 402 ~~~~~l 407 (415)
...++|
T Consensus 189 ~v~~~l 194 (213)
T PF08713_consen 189 EVLEFL 194 (213)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444554
No 316
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=77.60 E-value=25 Score=25.61 Aligned_cols=65 Identities=15% Similarity=0.139 Sum_probs=49.6
Q ss_pred HcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHH
Q 014945 281 EAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEAC 347 (415)
Q Consensus 281 ~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~ 347 (415)
...++..|+.+++.+.......++..+..++..+. ....+.+-|+...|.++-... ++..+..+-
T Consensus 28 ~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~-a~~~l~~iG~~~fL~klr~~~-~~~~~~~id 92 (98)
T PF14726_consen 28 ERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPY-AAQILRDIGAVRFLSKLRPNV-EPNLQAEID 92 (98)
T ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcH-HHHHHHHccHHHHHHHHHhcC-CHHHHHHHH
Confidence 44678899999999988899999999999888654 566677888888877776555 565554443
No 317
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=77.48 E-value=18 Score=27.52 Aligned_cols=55 Identities=16% Similarity=0.152 Sum_probs=41.5
Q ss_pred HHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCHHHHHHH
Q 014945 348 WTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKYK 407 (415)
Q Consensus 348 ~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l 407 (415)
.=|.+++..++..... ++..|.+-|++.++.|+..++..|..++..|+..+...+
T Consensus 23 ~Eia~~t~~s~~~~~e-----i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~ 77 (122)
T cd03572 23 EEIAKLTRKSVGSCQE-----LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKREL 77 (122)
T ss_pred HHHHHHHHcCHHHHHH-----HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHH
Confidence 3445555555444443 566888889999999999999999999999988777666
No 318
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=77.44 E-value=14 Score=27.37 Aligned_cols=78 Identities=14% Similarity=0.054 Sum_probs=55.7
Q ss_pred CChHHHHHHhcCCC---ccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhcc--CCHHHHHHHHHHHHHHhCCC
Q 014945 325 QALPCLLDLLTQNY---KKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN--AEFEIKKEAAWAISNATSGG 399 (415)
Q Consensus 325 ~~l~~L~~ll~~~~---~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~--~~~~v~~~a~~aL~nl~~~~ 399 (415)
|++..+...+.+.. +..-|+.+..+++.+..-....+.. +.|.++.+|.+ ..++++..|+.+...+...-
T Consensus 11 Gil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~-----a~pQI~acL~saL~~~eL~~~al~~W~~~i~~L 85 (107)
T smart00802 11 GILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISS-----ALPQIMACLQSALEIPELRSLALRCWHVLIKTL 85 (107)
T ss_pred HHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhC
Confidence 56667777776652 2345889999998887632233322 45666666665 57789999999999999888
Q ss_pred CHHHHHHH
Q 014945 400 SNEQIKYK 407 (415)
Q Consensus 400 ~~~~~~~l 407 (415)
+.+++..+
T Consensus 86 ~~~~l~~l 93 (107)
T smart00802 86 KEEELGPL 93 (107)
T ss_pred CHHHHHHH
Confidence 88888877
No 319
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=77.32 E-value=43 Score=28.22 Aligned_cols=141 Identities=16% Similarity=0.122 Sum_probs=88.0
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCC-CCHHHHHHH-HHHHHHhcCCCchhHHH
Q 014945 117 PRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-PTDDVREQA-VWALGNVAGDSPKCRDL 194 (415)
Q Consensus 117 ~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~v~~~a-~~~L~nl~~~~~~~~~~ 194 (415)
..+..++.++. .+.+..|+.++...... .... .++.+-.++.. ++-.+.+.. ..+++.+....
T Consensus 54 ~l~~~L~~~~~-~E~~~la~~il~~~~~~---~~~~-----~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~------ 118 (213)
T PF08713_consen 54 ELADELWESGY-REERYLALLILDKRRKK---LTEE-----DLELLEKWLPDIDNWATCDSLCSKLLGPLLKKH------ 118 (213)
T ss_dssp HHHHHHHCSSC-HHHHHHHHHHHHHCGGG-----HH-----HHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHHH------
T ss_pred HHHHHHcCCch-HHHHHHHHHHhHHHhhh---hhHH-----HHHHHHHHhccCCcchhhhHHHHHHHHHHHHhh------
Confidence 44556777777 88888888888664421 1111 35556666655 456666655 44455543211
Q ss_pred HHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChH
Q 014945 195 VLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTND 274 (415)
Q Consensus 195 ~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~ 274 (415)
....+.+...+ .++++-.++.++-++...... .....++..+...+.+++.-|+....|+|..++..+++
T Consensus 119 ---~~~~~~~~~W~-~s~~~w~rR~~~v~~~~~~~~------~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~ 188 (213)
T PF08713_consen 119 ---PEALELLEKWA-KSDNEWVRRAAIVMLLRYIRK------EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKDPD 188 (213)
T ss_dssp ---GGHHHHHHHHH-HCSSHHHHHHHHHCTTTHGGG------CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HH
T ss_pred ---HHHHHHHHHHH-hCCcHHHHHHHHHHHHHHHHh------cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHH
Confidence 11334445555 777877888777666555443 33345666777778888999999999999999988887
Q ss_pred HHHHHHHc
Q 014945 275 KIQAVIEA 282 (415)
Q Consensus 275 ~~~~~~~~ 282 (415)
....++..
T Consensus 189 ~v~~~l~~ 196 (213)
T PF08713_consen 189 EVLEFLQK 196 (213)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 76666655
No 320
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=77.05 E-value=90 Score=31.80 Aligned_cols=103 Identities=12% Similarity=0.124 Sum_probs=67.2
Q ss_pred hHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHH
Q 014945 116 VPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLV 195 (415)
Q Consensus 116 i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~ 195 (415)
|..|..+-.++- +.++..++..+..+..+.|++-.. ++..+++-|.+++..+...|.+.|.+|....|..+..+
T Consensus 306 ievLe~lS~D~L-~~vk~raL~ti~~lL~~kPEqE~~-----LL~~lVNKlGDpqnKiaskAsylL~~L~~~HPnMK~Vv 379 (988)
T KOG2038|consen 306 IEVLEELSKDPL-EEVKKRALKTIYDLLTNKPEQENN-----LLVLLVNKLGDPQNKIASKASYLLEGLLAKHPNMKIVV 379 (988)
T ss_pred HHHHHHHccccH-HHHHHHHHHHHHHHHhCCcHHHHH-----HHHHHHHhcCCcchhhhhhHHHHHHHHHhhCCcceeeh
Confidence 444444444454 788999999999988877776543 45678888888888999999999999988888665444
Q ss_pred HhcCChHHHHHHhc-cchhHhHHHHHHHHHHHhhh
Q 014945 196 LSNGALMPLLAQFN-EHAKLSMLRNATWTLSNFCR 229 (415)
Q Consensus 196 ~~~g~i~~L~~~l~-~~~~~~~~~~a~~~l~~l~~ 229 (415)
+ ..+.+++- .+.+.....+++-+|..+.-
T Consensus 380 i-----~EIer~~FRpn~~~ra~Yyav~fLnQ~~L 409 (988)
T KOG2038|consen 380 I-----DEIERLAFRPNVSERAHYYAVIFLNQMKL 409 (988)
T ss_pred H-----HHHHHHHcccCccccceeehhhhhhhhHh
Confidence 3 33333331 22233444455555554443
No 321
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=76.95 E-value=84 Score=31.39 Aligned_cols=160 Identities=18% Similarity=0.172 Sum_probs=82.8
Q ss_pred hHHHHHHHHHHHHHhCCCchhhHHHH---hCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHH
Q 014945 129 PQLQFEAAWALTNIASGTSENTRVVI---DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLL 205 (415)
Q Consensus 129 ~~i~~~a~~~L~~l~~~~~~~~~~~~---~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~ 205 (415)
.+.+.-|+.+|.-+..+.+-+-..+. .+..+..++..+. .++..+-.++++|.|+..+ +..+..+... ...++
T Consensus 558 ~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~-~~g~~~~~s~--~~~i~ 633 (745)
T KOG0301|consen 558 VEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSN-PAGRELFMSR--LESIL 633 (745)
T ss_pred HHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccC-HHHHHHHHHH--HHHHh
Confidence 57788888888777765333222222 1234555555554 4566778899999999988 4455555442 33333
Q ss_pred HHhc---cchhHhHHHHHHHHHHHhhhC--CCCCchhhhhchHHHHHHhhcC-CChhHHHHHHHHHHHhccCChHHHHHH
Q 014945 206 AQFN---EHAKLSMLRNATWTLSNFCRG--KPQPLFEQTRPALPALERLIHS-NDDEVLTDACWALSYLSDGTNDKIQAV 279 (415)
Q Consensus 206 ~~l~---~~~~~~~~~~a~~~l~~l~~~--~~~~~~~~~~~~l~~l~~lL~~-~d~~v~~~a~~~l~~l~~~~~~~~~~~ 279 (415)
..+. ..++..++....-...|++-. ....+......+...+..++.. +|.+....++-++++|+..+...++ +
T Consensus 634 ~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~~~~~-~ 712 (745)
T KOG0301|consen 634 DPVIEASSLSNKNLQIALATLALNYSVLLIQDNEQLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDASVIQ-L 712 (745)
T ss_pred hhhhhhhcccchhHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccHHHHH-H
Confidence 3321 122333443333333333321 1122222222233333333333 2444566677888999887766554 3
Q ss_pred HHcCcHHHHHHhcC
Q 014945 280 IEAGVCPRLVELLR 293 (415)
Q Consensus 280 ~~~~~i~~L~~lL~ 293 (415)
...--++.++.-++
T Consensus 713 A~~~~v~sia~~~~ 726 (745)
T KOG0301|consen 713 AKNRSVDSIAKKLK 726 (745)
T ss_pred HHhcCHHHHHHHHH
Confidence 33323455555553
No 322
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=76.86 E-value=61 Score=29.80 Aligned_cols=195 Identities=11% Similarity=0.109 Sum_probs=99.3
Q ss_pred ChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhcc--CChHHHH
Q 014945 200 ALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSD--GTNDKIQ 277 (415)
Q Consensus 200 ~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~--~~~~~~~ 277 (415)
++..+..++.+..++......+.++..=+..- .......++..+.+.+.+..+.+|..-+..++.... .+.....
T Consensus 23 i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~---~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~~~ 99 (339)
T PF12074_consen 23 IVQGLSPLLSKESNEAALSALLSALFKHLFFL---SSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDSLK 99 (339)
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh---CcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchHHH
Confidence 56677777767777777777666665444322 112225667788888888888898888888887765 1111111
Q ss_pred HHHHcCcHHHHHHhcC----CCChhh----HHHHHHHHHHhhcCChHHHHH--HH----HCCChHHHH---HHhcC-CCc
Q 014945 278 AVIEAGVCPRLVELLR----HPSPSV----LIPALRTVGNIVTGDDMQTQC--II----NHQALPCLL---DLLTQ-NYK 339 (415)
Q Consensus 278 ~~~~~~~i~~L~~lL~----~~~~~v----~~~a~~~l~nl~~~~~~~~~~--~~----~~~~l~~L~---~ll~~-~~~ 339 (415)
+. ..+++.|.+.+. ++-+.. ...+.-.+. +.......... .. ..+--|.++ +++.. . +
T Consensus 100 -~~-~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~-~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl~-~ 175 (339)
T PF12074_consen 100 -FA-EPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLA-LSSWKLDKIDSKNISFWSLALDPKPSFLLSEKVYSKLA-S 175 (339)
T ss_pred -HH-HHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHH-hccccchhhhhhhhhhhhhccCCCcchhcCHHHHhccC-C
Confidence 22 235667777663 332221 122222222 21111111110 00 000000000 12221 1 2
Q ss_pred cchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccC--CHHHHHHHHHHHHHHhCCCCH
Q 014945 340 KSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--EFEIKKEAAWAISNATSGGSN 401 (415)
Q Consensus 340 ~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~--~~~v~~~a~~aL~nl~~~~~~ 401 (415)
++-....+.++..+..+..+....-........++.++.+. .+++|+.|..++..+....+.
T Consensus 176 ~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~ 239 (339)
T PF12074_consen 176 EEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPE 239 (339)
T ss_pred HhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChH
Confidence 33333444444444443222111111223567788888887 899999999999999877554
No 323
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=76.19 E-value=4.5 Score=31.73 Aligned_cols=74 Identities=16% Similarity=0.114 Sum_probs=54.2
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChH---HHHHHHHHHHHHhC
Q 014945 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQ---LQFEAAWALTNIAS 144 (415)
Q Consensus 71 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~---i~~~a~~~L~~l~~ 144 (415)
+.+..|.+.|++.++.++..|+..+-.+....+.....++....++..|..++.+..... ++..++..+...+.
T Consensus 42 ea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 42 EAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence 456778888899999999999999988876542333455667778889999887654233 78888777765553
No 324
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.14 E-value=80 Score=34.49 Aligned_cols=225 Identities=16% Similarity=0.110 Sum_probs=121.6
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhc---cc---hhHhHHHHHHHHHHHhhhCC-CCCchhhh
Q 014945 167 SSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN---EH---AKLSMLRNATWTLSNFCRGK-PQPLFEQT 239 (415)
Q Consensus 167 ~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~---~~---~~~~~~~~a~~~l~~l~~~~-~~~~~~~~ 239 (415)
.++..+++...+.++.++.....+. . + +| -+...+++. .. ....+.+.+..++.-++.+. +..+...+
T Consensus 852 s~~~~evr~~sl~~l~silet~ge~--l-l-~~-w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci 926 (1610)
T KOG1848|consen 852 SSRGVEVRISSLEALVSILETVGEH--L-L-HG-WQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCI 926 (1610)
T ss_pred cCccceeeHHHHHHHHHHHhccchh--h-c-cc-cHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHH
Confidence 3456677777888888887544321 1 1 11 333333331 11 24567777777788777776 66777777
Q ss_pred hchHHHHHHhhcC-CChhHHHHHHHHHHHhcc---C------ChHHH-------------HHHHHcCcHHHHHHhc----
Q 014945 240 RPALPALERLIHS-NDDEVLTDACWALSYLSD---G------TNDKI-------------QAVIEAGVCPRLVELL---- 292 (415)
Q Consensus 240 ~~~l~~l~~lL~~-~d~~v~~~a~~~l~~l~~---~------~~~~~-------------~~~~~~~~i~~L~~lL---- 292 (415)
.++++.++.+-.. .|..+--.|+..+..+++ . ++... +.+.-+++.-.|..+|
T Consensus 927 ~~lidtl~~fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~ss~~~~~~l~e~lwi~ll~~L~~~~ 1006 (1610)
T KOG1848|consen 927 LDLIDTLLVFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYSSMKSKEILPEVLWIMLLVHLADLC 1006 (1610)
T ss_pred HHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcccccchhhhhhHHHHHHHHHHHHHh
Confidence 8888877766543 355555555444444432 1 11110 0011112222222222
Q ss_pred CCCChhhHHHHHHHHHHhhcCChH-HHHHHHHCCChHHHHHHhcCCC--------ccch----HHHHHHHHHHHhcCCHH
Q 014945 293 RHPSPSVLIPALRTVGNIVTGDDM-QTQCIINHQALPCLLDLLTQNY--------KKSI----KKEACWTISNITAGNVN 359 (415)
Q Consensus 293 ~~~~~~v~~~a~~~l~nl~~~~~~-~~~~~~~~~~l~~L~~ll~~~~--------~~~v----~~~a~~~l~nl~~~~~~ 359 (415)
.+.-..||..|+.++-.+...... ......+.-+...++.+|.... ...+ -+..+.+++.|+.-.++
T Consensus 1007 ~dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~ltisgIaklf~e 1086 (1610)
T KOG1848|consen 1007 EDSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSCLTISGIAKLFSE 1086 (1610)
T ss_pred ccchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhhhhHHHHHHHHHH
Confidence 344467788888877777643221 1111223334566777775221 1122 23567788888876677
Q ss_pred HHHHHHHcC-C-------HHHHHHHhccCCHHHHHHHHHHHHHHh
Q 014945 360 QIQAIIEAG-I-------IGPLVNLLLNAEFEIKKEAAWAISNAT 396 (415)
Q Consensus 360 ~~~~l~~~~-~-------i~~L~~~l~~~~~~v~~~a~~aL~nl~ 396 (415)
+...+.+.+ + +..|-+++.+.++++...|..++..+.
T Consensus 1087 ~fk~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell 1131 (1610)
T KOG1848|consen 1087 NFKLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELL 1131 (1610)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHH
Confidence 777776533 2 333333444578889888888877665
No 325
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=75.96 E-value=82 Score=30.91 Aligned_cols=100 Identities=20% Similarity=0.096 Sum_probs=62.6
Q ss_pred hHHHHHHHHHH---HHHhCCCchhh----HHHHhCCChHHHHH----hhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHh
Q 014945 129 PQLQFEAAWAL---TNIASGTSENT----RVVIDHGAVPIFVR----LLSSPTDDVREQAVWALGNVAGDSPKCRDLVLS 197 (415)
Q Consensus 129 ~~i~~~a~~~L---~~l~~~~~~~~----~~~~~~g~i~~L~~----ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~ 197 (415)
..++..++..+ .......+... ..++..++.|.+-. -..+.+...+..+..+||.|+...|..- .-+
T Consensus 335 ~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~--~~d 412 (501)
T PF13001_consen 335 SKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAPSLF--SKD 412 (501)
T ss_pred cccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHHHHHccCcccc--ccc
Confidence 56666665555 44443322222 22333455554410 1123567899999999999998877531 123
Q ss_pred cCChHHHHHHhccchhHhHHHHHHHHHHHhhhCC
Q 014945 198 NGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK 231 (415)
Q Consensus 198 ~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~ 231 (415)
.+.+..|.+-| ..+..+++..+-.+|+.++...
T Consensus 413 ~~li~~LF~sL-~~~~~evr~sIqeALssl~~af 445 (501)
T PF13001_consen 413 LSLIEFLFDSL-EDESPEVRVSIQEALSSLAPAF 445 (501)
T ss_pred HHHHHHHHHHh-hCcchHHHHHHHHHHHHHHHHH
Confidence 44677888888 7778888888888888888664
No 326
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=75.75 E-value=28 Score=25.33 Aligned_cols=68 Identities=13% Similarity=0.182 Sum_probs=50.5
Q ss_pred hcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHH
Q 014945 112 QSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWAL 181 (415)
Q Consensus 112 ~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L 181 (415)
..+++..|++.++.+. ...+..++..+..++.. +.....+.+-|+...|.++=..-++..+...-..+
T Consensus 28 ~~~Ll~~LleWFnf~~-~~~~~~VL~Ll~~L~~~-~~a~~~l~~iG~~~fL~klr~~~~~~~~~~id~il 95 (98)
T PF14726_consen 28 ERLLLKQLLEWFNFPP-VPMKEEVLALLLRLLKS-PYAAQILRDIGAVRFLSKLRPNVEPNLQAEIDEIL 95 (98)
T ss_pred HHHHHHHHHHHhCCCC-CccHHHHHHHHHHHHhC-cHHHHHHHHccHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4567788888888877 56888999999998885 77778888889888877666555665555444333
No 327
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=75.71 E-value=36 Score=26.62 Aligned_cols=96 Identities=9% Similarity=0.011 Sum_probs=68.6
Q ss_pred cCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCC-HHHHHHHHHcCCH
Q 014945 292 LRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN-VNQIQAIIEAGII 370 (415)
Q Consensus 292 L~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~-~~~~~~l~~~~~i 370 (415)
+..+++......|..+.. .+.... .++..+.+-+.++ ++.+...|...|-.+..++ +.....+...+++
T Consensus 14 l~~~dw~~ileicD~In~----~~~~~k-----~a~rai~krl~~~-n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl 83 (139)
T cd03567 14 NREEDWEAIQAFCEQINK----EPEGPQ-----LAVRLLAHKIQSP-QEKEALQALTVLEACMKNCGERFHSEVGKFRFL 83 (139)
T ss_pred CCCCCHHHHHHHHHHHHc----CCccHH-----HHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHH
Confidence 345677777777777743 111111 3466788888998 9999999999888888744 3444556677899
Q ss_pred HHHHHHhcc------CCHHHHHHHHHHHHHHhC
Q 014945 371 GPLVNLLLN------AEFEIKKEAAWAISNATS 397 (415)
Q Consensus 371 ~~L~~~l~~------~~~~v~~~a~~aL~nl~~ 397 (415)
..|++++.. .++.|+..++..+..-+.
T Consensus 84 ~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 84 NELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 999999953 568999998888877764
No 328
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=75.51 E-value=55 Score=35.26 Aligned_cols=178 Identities=11% Similarity=0.083 Sum_probs=101.4
Q ss_pred HhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcC
Q 014945 214 LSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR 293 (415)
Q Consensus 214 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~ 293 (415)
.++++.++|+|..+..+-. .......+..+.+++..+..+++...+..+.+....-.+....+. ..+++..+..|.
T Consensus 143 apVre~caq~L~~~l~~~~---~s~~~~~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l~~~~-~~vl~~~i~~L~ 218 (1549)
T KOG0392|consen 143 APVREACAQALGAYLKHMD---ESLIKETLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLLFQLL-NLVLDFVIEGLE 218 (1549)
T ss_pred hhhHHHHHHHHHHHHHhhh---hHhhHHHHHHHHHHHcCcchhheechHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhh
Confidence 4688899999998887632 223345666777777777777777766666655432222222111 246778888888
Q ss_pred CCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccch--HHHHHHHHHHHhcCCHHHHHHHH-----H
Q 014945 294 HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSI--KKEACWTISNITAGNVNQIQAII-----E 366 (415)
Q Consensus 294 ~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v--~~~a~~~l~nl~~~~~~~~~~l~-----~ 366 (415)
+.+..++..|...+.-++.........-+ ..++..+...+..- +.-. ....-..+..++... ....+. +
T Consensus 219 ds~ddv~~~aa~~l~~~~s~~v~l~~~~i-~~lv~~l~~~l~~l-ddl~~s~~si~~ll~~l~~~~--evl~l~~~~n~~ 294 (1549)
T KOG0392|consen 219 DSDDDVRSVAAQFLVPAPSIQVKLMVQKI-AKLVHTLWSFLLEL-DDLSSSTASIMHLLDELCIEN--EVLDLFEQQNLE 294 (1549)
T ss_pred hcchHHHHHHHHHhhhhhHHHHhhhHhHH-HHHHHHHHHHHHHh-hhcchhhHHHHHHHHHHhhhH--HHHHHHHHhhhh
Confidence 88888998888877766654321111000 12233333333222 1100 011111222333221 122222 2
Q ss_pred cCCHHHHHHHhccCCHHHHHHHHHHHHHHhCCC
Q 014945 367 AGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG 399 (415)
Q Consensus 367 ~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~~ 399 (415)
.|++|.+...+.+.=..++..++..+..+...+
T Consensus 295 ~~Lvp~~~p~l~~~i~sv~~a~l~~l~~lle~~ 327 (1549)
T KOG0392|consen 295 VGLVPRLWPFLRHTISSVRRAALETLAMLLEAD 327 (1549)
T ss_pred hccchhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 578899999988877888888888888887654
No 329
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=75.17 E-value=5.6 Score=21.39 Aligned_cols=18 Identities=11% Similarity=0.401 Sum_probs=14.1
Q ss_pred chHHHHHHHHHHHhcCCHHH
Q 014945 341 SIKKEACWTISNITAGNVNQ 360 (415)
Q Consensus 341 ~v~~~a~~~l~nl~~~~~~~ 360 (415)
.+|.+|+++|+++. +++.
T Consensus 2 ~vR~~aa~aLg~~~--~~~a 19 (30)
T smart00567 2 LVRHEAAFALGQLG--DEEA 19 (30)
T ss_pred HHHHHHHHHHHHcC--CHhH
Confidence 57999999999984 4553
No 330
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=75.01 E-value=39 Score=32.74 Aligned_cols=112 Identities=13% Similarity=0.217 Sum_probs=70.6
Q ss_pred CcHHHHHHhcCCCChhhHHHHHHHHHHhhc---CChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCC--
Q 014945 283 GVCPRLVELLRHPSPSVLIPALRTVGNIVT---GDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN-- 357 (415)
Q Consensus 283 ~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~---~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~-- 357 (415)
++++.+++.+. .+.+..-.++.++ +. ......+.+.+.++++.|+.+|....++.++..|+.+|..|..-+
T Consensus 21 ~~v~~llkHI~--~~~ImDlLLklIs--~d~~~~~~~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n 96 (475)
T PF04499_consen 21 NFVDNLLKHID--TPAIMDLLLKLIS--TDKPESPTGILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRN 96 (475)
T ss_pred cHHHHHHHhcC--CcHHHHHHHHHHc--cCcccchHHHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhc
Confidence 67777777774 3345555555555 22 122445556678999999999987668889999999988776411
Q ss_pred -----------HHHHHHHHHcCCHHHHHHHhcc-CCHHHHHHHHHHHHHHhCC
Q 014945 358 -----------VNQIQAIIEAGIIGPLVNLLLN-AEFEIKKEAAWAISNATSG 398 (415)
Q Consensus 358 -----------~~~~~~l~~~~~i~~L~~~l~~-~~~~v~~~a~~aL~nl~~~ 398 (415)
.+-...+.....+..|++.+-. ........++..+..+...
T Consensus 97 ~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~~s~lvn~v~IlieLIRk 149 (475)
T PF04499_consen 97 APQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQGGSSLVNGVSILIELIRK 149 (475)
T ss_pred cccccccCCCccHHHHHHhChHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHh
Confidence 2234455556677777777653 2234445555555555543
No 331
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=74.88 E-value=43 Score=27.07 Aligned_cols=108 Identities=15% Similarity=0.135 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHHhccC-----CCC---chhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHH-h
Q 014945 85 RNIQLDATTQFRKLLSIE-----RSP---PINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVI-D 155 (415)
Q Consensus 85 ~~~~~~a~~~l~~l~~~~-----~~~---~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~-~ 155 (415)
...+..++..+..++... +.+ ....+++..+.+.+++.+.+++ +.+-..+++++..+... .+..+. +
T Consensus 36 ~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~-~~i~~~slri~~~l~~~---~~~~Lk~e 111 (168)
T PF12783_consen 36 ERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSD-FPIFSRSLRIFLTLLSR---FRSHLKLE 111 (168)
T ss_pred HHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 344555666666655433 122 3445667778899999998877 88888999999988853 222222 1
Q ss_pred CC-ChHHHHH-hhCCCC--HHHHHHHHHHHHHhcCCCchhHHHHH
Q 014945 156 HG-AVPIFVR-LLSSPT--DDVREQAVWALGNVAGDSPKCRDLVL 196 (415)
Q Consensus 156 ~g-~i~~L~~-ll~~~~--~~v~~~a~~~L~nl~~~~~~~~~~~~ 196 (415)
.+ .++.++. ++.+++ ..-++.++.++..++.++.-..+...
T Consensus 112 le~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~p~~l~~lf~ 156 (168)
T PF12783_consen 112 LEVFLSHIILRILESDNSSLWQKELALEILRELCKDPQFLVDLFV 156 (168)
T ss_pred HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHhChhHHHHHHH
Confidence 11 2444444 566543 46788899999999987765555444
No 332
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=74.36 E-value=92 Score=31.13 Aligned_cols=142 Identities=12% Similarity=0.035 Sum_probs=72.1
Q ss_pred CCCHHHHHHHHHHHHHHhccCCCCchhHHH----hcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhC-
Q 014945 82 SDDRNIQLDATTQFRKLLSIERSPPINEVI----QSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDH- 156 (415)
Q Consensus 82 ~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~----~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~- 156 (415)
.-.++.++.|+.++|-++... .....+. ...++..++..+. .+ +..+..++++|.|+..+ +..++.+...
T Consensus 555 ~wp~~~~fPalDilRl~v~h~--~~~s~~~~~~~~~~~~~~li~~~~-~~-~an~ll~vR~L~N~f~~-~~g~~~~~s~~ 629 (745)
T KOG0301|consen 555 QWPVEMMFPALDILRLAVKHH--SSNSLFCDREEGQNLVGTLIPILN-AD-PANQLLVVRCLANLFSN-PAGRELFMSRL 629 (745)
T ss_pred cCCHHHhhhHHHHHHHHHhcc--chhhhhhhhhhhhHHHHhhhcccc-cc-hhHHHHHHHHHHHhccC-HHHHHHHHHHH
Confidence 334566777888888776432 1111222 2235666666666 44 78899999999999987 6666665543
Q ss_pred -CChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHh----ccchhHhHHHHHHHHHHHhhhCC
Q 014945 157 -GAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQF----NEHAKLSMLRNATWTLSNFCRGK 231 (415)
Q Consensus 157 -g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l----~~~~~~~~~~~a~~~l~~l~~~~ 231 (415)
.++..+++.=..++..++........|++.-- ...-.+.+..+.+...+ ....+.+....++-++.+|+..+
T Consensus 630 ~~i~~~~~~~~s~~~knl~ia~atlaln~sv~l---~~~~~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~ 706 (745)
T KOG0301|consen 630 ESILDPVIEASSLSNKNLQIALATLALNYSVLL---IQDNEQLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVD 706 (745)
T ss_pred HHHhhhhhhhhcccchhHHHHHHHHHHHHHHHH---HhcccccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhcccc
Confidence 22222222222244455544444444443100 00001123333333333 12233344555666677777654
No 333
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=74.33 E-value=70 Score=29.20 Aligned_cols=181 Identities=11% Similarity=0.073 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccc--------hhHhHHHHHHHHHHHhhhCCCCCchhhhhchH
Q 014945 172 DVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEH--------AKLSMLRNATWTLSNFCRGKPQPLFEQTRPAL 243 (415)
Q Consensus 172 ~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~--------~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l 243 (415)
.++...+..+.......+.. .. +....+++|+..+..+ .++++..-....+..+-..-..........++
T Consensus 42 ~iKkeIL~Li~t~i~~~~~~-~~-v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf 119 (319)
T PF08767_consen 42 TIKKEILKLIETFISKAEDP-EE-VANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVF 119 (319)
T ss_dssp HHHHHHHHHHHHHHHT-S-H-HH-HHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCH-HH-HHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 34555566666555444432 22 3344778877743111 24555555555555555433333444456677
Q ss_pred HHHHHhhcCC---ChhHHHHHHHHHHHhccCChHHHHHHHH---cCcHHHHHHhcCCCChhhHHHHHHHHHHhhcC----
Q 014945 244 PALERLIHSN---DDEVLTDACWALSYLSDGTNDKIQAVIE---AGVCPRLVELLRHPSPSVLIPALRTVGNIVTG---- 313 (415)
Q Consensus 244 ~~l~~lL~~~---d~~v~~~a~~~l~~l~~~~~~~~~~~~~---~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~---- 313 (415)
...+.++..+ -|+.+..-...+..+........-.+-. ..+++.++..++|++.++...++.++..+...
T Consensus 120 ~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~ 199 (319)
T PF08767_consen 120 ECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSKT 199 (319)
T ss_dssp HHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhc
Confidence 7777888654 3788888777777776543221111100 13567788888999999999999998888753
Q ss_pred ChHHHHHHHHCC---ChHHHHHHhcCCCccchHHHHHHHHHHHh
Q 014945 314 DDMQTQCIINHQ---ALPCLLDLLTQNYKKSIKKEACWTISNIT 354 (415)
Q Consensus 314 ~~~~~~~~~~~~---~l~~L~~ll~~~~~~~v~~~a~~~l~nl~ 354 (415)
+++....+...- ++..+...+.++.....-+.-+.+|.++.
T Consensus 200 ~~~~~~~F~~~y~~~il~~if~vltD~~Hk~gf~~q~~iL~~Lf 243 (319)
T PF08767_consen 200 NPEFANQFYQQYYLDILQDIFSVLTDSDHKSGFKLQSQILSNLF 243 (319)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHSTT-GGGHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHH
Confidence 333444444433 34445555555434555555556666665
No 334
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=73.92 E-value=65 Score=33.32 Aligned_cols=126 Identities=13% Similarity=0.078 Sum_probs=83.8
Q ss_pred hchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHH
Q 014945 240 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQ 319 (415)
Q Consensus 240 ~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~ 319 (415)
..+-..+...+.+++.......+.++..++.-..-.... ...-.+.-..-.+..-..+......+|+.++...+....
T Consensus 440 ~~lW~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~--~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~~~~~L~ 517 (727)
T PF12726_consen 440 PNLWKALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK--EKDELDPAKTQFNKSLGQITDLISQILERLSDFDPSHLK 517 (727)
T ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHHHhccccccCCcc--cccCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 444556666777778888888888888776432111000 000111111112222235677888999999998887777
Q ss_pred HHHH-CCChHHHHHHhcCCCccchHHHHHHHHHHHhc--CCHHHHHHHHHcC
Q 014945 320 CIIN-HQALPCLLDLLTQNYKKSIKKEACWTISNITA--GNVNQIQAIIEAG 368 (415)
Q Consensus 320 ~~~~-~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~--~~~~~~~~l~~~~ 368 (415)
.++. .+....+..++-++ +.++...|...|..+.. +..+.++.+++..
T Consensus 518 ~l~~d~~~~~~i~s~lfsp-~~~l~qaA~~llk~~~d~~~R~e~i~~ll~~~ 568 (727)
T PF12726_consen 518 ELLSDPDAAQAIWSLLFSP-DDDLYQAAQDLLKQAFDVDGRLEAIQALLQSN 568 (727)
T ss_pred HHHcCcchhhHHHhheeCC-ChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHh
Confidence 7775 48888999999999 99999999999999886 4566666666543
No 335
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.02 E-value=1.8e+02 Score=33.27 Aligned_cols=230 Identities=15% Similarity=0.079 Sum_probs=116.8
Q ss_pred hHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhcCCCchhHHH
Q 014945 116 VPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDL 194 (415)
Q Consensus 116 i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~v~~~a~~~L~nl~~~~~~~~~~ 194 (415)
+..++..+..++ +..+..+..+++.++..-++.. ++ .+....++.-+.+ .++..|..-.-+++.+-.+.......
T Consensus 878 ~~l~~~sl~~~~-p~~rc~~~ea~arLaq~v~~~~--f~-a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~ 953 (2067)
T KOG1822|consen 878 LTLIVNSLINPN-PKLRCAAAEALARLAQVVGSAP--FV-ASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSG 953 (2067)
T ss_pred HHHHhhhhccCC-hHHHHHHHHHHHHHHHhccccc--hH-HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCc
Confidence 344455555666 7777777777777776322211 11 1234445554544 44545555555555554322211111
Q ss_pred HHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCC---hhHHHHHH---------
Q 014945 195 VLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSND---DEVLTDAC--------- 262 (415)
Q Consensus 195 ~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d---~~v~~~a~--------- 262 (415)
-.....+..++.+..++.++.++.-++.++..+...........+...+..+..+|-+.. .++...--
T Consensus 954 qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~~ 1033 (2067)
T KOG1822|consen 954 QHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDDE 1033 (2067)
T ss_pred hhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhhhhhhhccccccchhH
Confidence 111224556666665666778999999999988877544445555666666666664321 22221111
Q ss_pred ----HHHHHhccCChH--HHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcC
Q 014945 263 ----WALSYLSDGTND--KIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQ 336 (415)
Q Consensus 263 ----~~l~~l~~~~~~--~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~ 336 (415)
.+++.=...+.. .+. .+..-.+-...-++.++++-++..+..++.++-...+.... -.-+++.+..++.+
T Consensus 1034 ~alittlgpeL~~N~~~d~t~-~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~n---~~~lV~~L~~~l~s 1109 (2067)
T KOG1822|consen 1034 DALITTLGPELGPNGDKDSTS-TLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHVN---LDSLVLQLCSLLSS 1109 (2067)
T ss_pred HHHHHhcccccCCCCcccchh-HHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhcc---HHHHHHHHHHHhcc
Confidence 111111111110 111 11122222333345677888999999999988876654322 11345666666666
Q ss_pred CCccchHHHHHHHHHHHh
Q 014945 337 NYKKSIKKEACWTISNIT 354 (415)
Q Consensus 337 ~~~~~v~~~a~~~l~nl~ 354 (415)
+ -.-.|....-++..+.
T Consensus 1110 ~-~~i~r~~~~~clrql~ 1126 (2067)
T KOG1822|consen 1110 S-YLILRRASFSCLRQLV 1126 (2067)
T ss_pred h-hhhhhhhHHhhhhHHh
Confidence 5 3334343344444333
No 336
>PF09758 FPL: Uncharacterised conserved protein; InterPro: IPR019155 The proteins in this family are functionally uncharacterised. They contain a highly conserved FPL motif.
Probab=72.99 E-value=21 Score=28.17 Aligned_cols=123 Identities=15% Similarity=0.114 Sum_probs=82.2
Q ss_pred CchhhHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhcCC--CchhHHHHHhcCChHHHHHHhccchhHhHHHHHHH
Q 014945 146 TSENTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGD--SPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATW 222 (415)
Q Consensus 146 ~~~~~~~~~~~g~i~~L~~ll~~-~~~~v~~~a~~~L~nl~~~--~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~ 222 (415)
+++.-+.+.+...+..+++++.. ....++.+.+.++.-+... ++..-..+...+.+..++..--+-.++++...-..
T Consensus 15 ~~~~Fd~F~E~nil~~f~~il~~~~~~~V~~QlLQtlsiLiqNi~~~~slyyllSnn~iN~iI~~~~d~~~ee~l~yYIs 94 (149)
T PF09758_consen 15 DPSFFDFFMEKNILSTFVRILKQSRSSSVKLQLLQTLSILIQNIRSETSLYYLLSNNHINEIITYPFDFSDEEVLSYYIS 94 (149)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhcCCCcceEEEecchHHHHHHhcCCCCCcchhHHHHHH
Confidence 35566788888899999999887 5677888888877776532 22233456677778888776545568888888888
Q ss_pred HHHHhhhCCCCCc--hhh-----hhchHHHHHHhhcCCChhHHHHHHHHHHHh
Q 014945 223 TLSNFCRGKPQPL--FEQ-----TRPALPALERLIHSNDDEVLTDACWALSYL 268 (415)
Q Consensus 223 ~l~~l~~~~~~~~--~~~-----~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l 268 (415)
.|..++..-.... ... .-++...-++++.++|.-++.++-..+.++
T Consensus 95 fLK~lSlkln~~tv~fffn~~~~~FPL~~~aikf~~h~d~Mvr~avR~i~Lni 147 (149)
T PF09758_consen 95 FLKTLSLKLNKDTVQFFFNERNDSFPLYTEAIKFYNHPDSMVRTAVRTITLNI 147 (149)
T ss_pred HHHHHHhhcCCCceeEeEecCCCCCCcHHHHHHhhcCcchHHHHHHHHHHHhh
Confidence 8888886532221 111 123334455677888888887776666554
No 337
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=72.82 E-value=21 Score=26.44 Aligned_cols=78 Identities=17% Similarity=0.080 Sum_probs=55.6
Q ss_pred CChHHHHHHhcC---CCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhcc--CCHHHHHHHHHHHHHHhCCC
Q 014945 325 QALPCLLDLLTQ---NYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN--AEFEIKKEAAWAISNATSGG 399 (415)
Q Consensus 325 ~~l~~L~~ll~~---~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~--~~~~v~~~a~~aL~nl~~~~ 399 (415)
|++..+-..+.+ ..+...|+.+...++.+..-..+.+.. +.|.++..|.. ..++++..|+.+...+...-
T Consensus 11 gil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~-----~~pQI~a~L~sal~~~~l~~~al~~W~~fi~~L 85 (107)
T PF08064_consen 11 GILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISS-----ARPQIMACLQSALEIPELREEALSCWNCFIKTL 85 (107)
T ss_pred HHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHH-----HHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHC
Confidence 556666666665 336678889999999888733343433 45566666654 45689999999999999888
Q ss_pred CHHHHHHH
Q 014945 400 SNEQIKYK 407 (415)
Q Consensus 400 ~~~~~~~l 407 (415)
+.+.+..+
T Consensus 86 ~~~~l~~l 93 (107)
T PF08064_consen 86 DEEDLGPL 93 (107)
T ss_pred CHHHHHHH
Confidence 88877766
No 338
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=72.31 E-value=69 Score=28.25 Aligned_cols=179 Identities=19% Similarity=0.186 Sum_probs=99.5
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhcCC-------CchhHHHHHhcCChHHHHHHhccch---hHhHHHHHHHHHHHhh
Q 014945 159 VPIFVRLLSSPTDDVREQAVWALGNVAGD-------SPKCRDLVLSNGALMPLLAQFNEHA---KLSMLRNATWTLSNFC 228 (415)
Q Consensus 159 i~~L~~ll~~~~~~v~~~a~~~L~nl~~~-------~~~~~~~~~~~g~i~~L~~~l~~~~---~~~~~~~a~~~l~~l~ 228 (415)
-+.+.+-+.++ ...+.++..|..++.. +++.|-.+.-.+.+|.++..+.+.. ..+....++..|+.+|
T Consensus 66 q~Ll~KGL~Ss--~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a 143 (262)
T PF14225_consen 66 QPLLLKGLRSS--STYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVA 143 (262)
T ss_pred HHHHhCccCCC--CcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHH
Confidence 33444444443 3445667777776532 1212333333345677777773333 1245567778888888
Q ss_pred hCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHH
Q 014945 229 RGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVG 308 (415)
Q Consensus 229 ~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~ 308 (415)
....... ...++....+-=..+..+....++..|+.-. .++. +..++..++.+|.++.+.++..++.+|.
T Consensus 144 ~~~~~~~---La~il~~ya~~~fr~~~dfl~~v~~~l~~~f--~P~~-----~~~~l~~Ll~lL~n~~~w~~~~~L~iL~ 213 (262)
T PF14225_consen 144 EAQGLPN---LARILSSYAKGRFRDKDDFLSQVVSYLREAF--FPDH-----EFQILTFLLGLLENGPPWLRRKTLQILK 213 (262)
T ss_pred HhCCCcc---HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh--Cchh-----HHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 6532221 1222222221111233445555555554422 1111 1235677899998888899999999999
Q ss_pred HhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhc
Q 014945 309 NIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 355 (415)
Q Consensus 309 nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~ 355 (415)
.+....+-... ...+++.++.++++++ ...+|..+|-++..
T Consensus 214 ~ll~~~d~~~~--~~~dlispllrlL~t~----~~~eAL~VLd~~v~ 254 (262)
T PF14225_consen 214 VLLPHVDMRSP--HGADLISPLLRLLQTD----LWMEALEVLDEIVT 254 (262)
T ss_pred HHhccccCCCC--cchHHHHHHHHHhCCc----cHHHHHHHHHHHHh
Confidence 99876553322 4556888999999665 34566666666554
No 339
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=71.16 E-value=1.3e+02 Score=30.99 Aligned_cols=34 Identities=21% Similarity=0.327 Sum_probs=27.9
Q ss_pred hhccHHHHHHhhcCCCHHHHHHHHHHHHHHhccC
Q 014945 69 KLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIE 102 (415)
Q Consensus 69 ~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~ 102 (415)
.+..+|.+++.|.++...+--.|+.++.+++...
T Consensus 496 lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~vr 529 (960)
T KOG1992|consen 496 LMALLPRLIRFLEAESRVVHSYAAIAIEKLLTVR 529 (960)
T ss_pred HHHHHHHHHHhccCcchHHHHHHHHHHHhccccc
Confidence 3456899999999988888888999999887764
No 340
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.12 E-value=1.5e+02 Score=31.70 Aligned_cols=253 Identities=13% Similarity=0.140 Sum_probs=139.2
Q ss_pred HHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCC-----
Q 014945 94 QFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS----- 168 (415)
Q Consensus 94 ~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~----- 168 (415)
+|..++... .++.+.+.+..++..++.++-+ ++-|...++++..+....+.+.. ..-+-.++..|++
T Consensus 665 cLisllKnn-teNqklFreanGvklilpflin---dehRSslLrivscLitvdpkqvh----hqelmalVdtLksgmvt~ 736 (2799)
T KOG1788|consen 665 CLISLLKNN-TENQKLFREANGVKLILPFLIN---DEHRSSLLRIVSCLITVDPKQVH----HQELMALVDTLKSGMVTR 736 (2799)
T ss_pred HHHHHHhcc-chhhHHHHhhcCceEEEEeeec---hHHHHHHHHHHHHHhccCccccc----HHHHHHHHHHHHhcceec
Confidence 444554443 6667777788888888877733 45666667777666655454221 1123445555554
Q ss_pred ---CC----HHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhcc---------chhHhHHH---HHHHHHHHhh-
Q 014945 169 ---PT----DDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE---------HAKLSMLR---NATWTLSNFC- 228 (415)
Q Consensus 169 ---~~----~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~---------~~~~~~~~---~a~~~l~~l~- 228 (415)
.+ ..+....+.+++.+.+.+...+..+-+.++...|+..|-. ..+.-+.. ..++-+..++
T Consensus 737 IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyiklfkilFrlfTlav 816 (2799)
T KOG1788|consen 737 ISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFRLFTLAV 816 (2799)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHHHHHHHH
Confidence 11 2234455667777777666677778888888777766510 11211111 1111122222
Q ss_pred -hCCCCCchhh-------------hhc---------hHHHH----HHhhcCCChhHHHHHHHHHHHhcc---------C-
Q 014945 229 -RGKPQPLFEQ-------------TRP---------ALPAL----ERLIHSNDDEVLTDACWALSYLSD---------G- 271 (415)
Q Consensus 229 -~~~~~~~~~~-------------~~~---------~l~~l----~~lL~~~d~~v~~~a~~~l~~l~~---------~- 271 (415)
....+..... ..+ .+..+ .+.+.+++-.--..||..+..+-+ +
T Consensus 817 cenasNrmklhtvITsqtftsLLresgllcvnler~viqlllElalevlvppfLtSEsaAcaeVfelednifavntPsGq 896 (2799)
T KOG1788|consen 817 CENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPPFLTSESAACAEVFELEDNIFAVNTPSGQ 896 (2799)
T ss_pred hhcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCchhhhhHHHHHHHhhcccceeeeccCCCC
Confidence 2211111000 001 11111 111222222222334444433321 1
Q ss_pred ChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhc---CCCccchHHHHHH
Q 014945 272 TNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLT---QNYKKSIKKEACW 348 (415)
Q Consensus 272 ~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~---~~~~~~v~~~a~~ 348 (415)
.....+.+...|++..++..+-...+..+..-++.+..++..++......-..|.++.+++++. ++ +...-..+..
T Consensus 897 fnpdk~~iynagavRvlirslLlnypK~qlefl~lleSlaRaspfnaelltS~gcvellleIiypflsg-sspfLshalk 975 (2799)
T KOG1788|consen 897 FNPDKQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFNAELLTSAGCVELLLEIIYPFLSG-SSPFLSHALK 975 (2799)
T ss_pred cCchHhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHHHhhhhhcC-CchHhhccHH
Confidence 1123456788899999999988888999999999999999988877776666788888887763 23 3445555555
Q ss_pred HHHHHhc
Q 014945 349 TISNITA 355 (415)
Q Consensus 349 ~l~nl~~ 355 (415)
++.-++.
T Consensus 976 IvemLga 982 (2799)
T KOG1788|consen 976 IVEMLGA 982 (2799)
T ss_pred HHHHHhh
Confidence 5655554
No 341
>PF11229 DUF3028: Protein of unknown function (DUF3028); InterPro: IPR021392 This eukaryotic family of proteins has no known function.
Probab=71.09 E-value=1e+02 Score=29.79 Aligned_cols=187 Identities=15% Similarity=0.133 Sum_probs=89.6
Q ss_pred CchHHHHHhhcCCCChHHHHHHHHHHHHHhCCC----------chhhHHHHhCCChHHHHHhhCC----C----CHHHHH
Q 014945 114 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGT----------SENTRVVIDHGAVPIFVRLLSS----P----TDDVRE 175 (415)
Q Consensus 114 g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~----------~~~~~~~~~~g~i~~L~~ll~~----~----~~~v~~ 175 (415)
.+|..+.+.++.+...-+|..++|.|+.+--.+ |..-.++-+..+|...+.++-. + .+....
T Consensus 97 evir~ltqvis~sg~iglQsn~~wlLGhLhls~~ss~~srtsvP~d~sYLpE~S~iRaai~f~i~~GkkGpe~vpp~lvk 176 (589)
T PF11229_consen 97 EVIRTLTQVISFSGVIGLQSNAAWLLGHLHLSTLSSSQSRTSVPTDFSYLPESSFIRAAIDFLIEAGKKGPESVPPSLVK 176 (589)
T ss_pred HHHHHHHHHHcCccccccccchHHHHHHHHHhhcccccCCCCCCCccccCcchhHHHHHHHHHHHccccCCccCCHHHHH
Confidence 367778888876554788999999999864211 1122233344556666665532 1 233444
Q ss_pred HHHHHHHHhcCC---CchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcC
Q 014945 176 QAVWALGNVAGD---SPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHS 252 (415)
Q Consensus 176 ~a~~~L~nl~~~---~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~ 252 (415)
.++.-+...... +|-+ -.-.+.+|+++ +...+++..++.....=+..........-.-+.|.++.-+.
T Consensus 177 vvl~~ia~vgeS~qyPPVN-----WaalLsPLMRl---nfGeEvq~lCLeiAvtQaqSSqsAa~fLg~WlsPpli~sLs- 247 (589)
T PF11229_consen 177 VVLKPIATVGESYQYPPVN-----WAALLSPLMRL---NFGEEVQQLCLEIAVTQAQSSQSAAMFLGSWLSPPLIHSLS- 247 (589)
T ss_pred HHHHHhhhcCCCCCCCCcc-----HHHHhhHHHhc---cccHHHHHHHHHHHHHhccccccHHHHHHhhcCcchhhhhh-
Confidence 455444433221 1211 11134455554 23566666666544333332222222222233444444333
Q ss_pred CChhHHHHHHHHHHHhc-cCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhh
Q 014945 253 NDDEVLTDACWALSYLS-DGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV 311 (415)
Q Consensus 253 ~d~~v~~~a~~~l~~l~-~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~ 311 (415)
...+...+..+.... .-.+++++.+++.-+++.+-..-...++++...++.-|..-.
T Consensus 248 --~~tk~~L~~Sl~~wmkhVsedqiQ~Fve~l~vq~F~~~~~~~~~~lC~saLqGLsqAM 305 (589)
T PF11229_consen 248 --VNTKKYLFESLSLWMKHVSEDQIQAFVENLMVQQFKAASRPSNPELCQSALQGLSQAM 305 (589)
T ss_pred --HHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHh
Confidence 334444444444433 334566666665433333333323345666666666666533
No 342
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=70.77 E-value=60 Score=29.98 Aligned_cols=110 Identities=12% Similarity=0.104 Sum_probs=65.5
Q ss_pred ChHHHHHHhccc-----h-hHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcC----------CChhHHHHHHH
Q 014945 200 ALMPLLAQFNEH-----A-KLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHS----------NDDEVLTDACW 263 (415)
Q Consensus 200 ~i~~L~~~l~~~-----~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~----------~d~~v~~~a~~ 263 (415)
.+|.++.++... . +.......+.++..|..++.-........++|.++.++-. +...+|..|+.
T Consensus 211 LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ 290 (343)
T cd08050 211 LLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAAR 290 (343)
T ss_pred hhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHH
Confidence 466666666321 1 5667777888888888776555556667788888877621 23568999999
Q ss_pred HHHHhccCChHHHHHHHHcCcHHHHHHhcCCCCh--hhHHHHHHHHHHh
Q 014945 264 ALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSP--SVLIPALRTVGNI 310 (415)
Q Consensus 264 ~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~--~v~~~a~~~l~nl 310 (415)
++..++........ -+...++..+.+.|.++.. ...--|+..|+.+
T Consensus 291 ll~~i~~~f~~~y~-~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~l 338 (343)
T cd08050 291 LLAQICRKFSTSYN-TLQPRITRTLLKALLDPKKPLTTHYGAIVGLSAL 338 (343)
T ss_pred HHHHHHHHcCCCCC-cHHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHh
Confidence 99988854332211 1223345555555554432 2244455555544
No 343
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.06 E-value=44 Score=31.04 Aligned_cols=113 Identities=15% Similarity=0.125 Sum_probs=79.7
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHH
Q 014945 243 LPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCII 322 (415)
Q Consensus 243 l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~ 322 (415)
+.-+...+++.+..++.+|+..+..+....+.... ..-..+++.+..+..+.+..+|......+-.+............
T Consensus 60 lkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l~-~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~ 138 (393)
T KOG2149|consen 60 LKELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQ-SHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPM 138 (393)
T ss_pred HHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHH-HHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcch
Confidence 55567778999999999999999887765444333 22234678888888888888998888888776553322222222
Q ss_pred HCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCC
Q 014945 323 NHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN 357 (415)
Q Consensus 323 ~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~ 357 (415)
-.=+.+++...+.+. .+.++..+...+.-+....
T Consensus 139 ~~l~~~yi~~AMThi-t~~i~~dslkfL~~Ll~~~ 172 (393)
T KOG2149|consen 139 VSLLMPYISSAMTHI-TPEIQEDSLKFLSLLLERY 172 (393)
T ss_pred HHHHHHHHHHHHhhc-cHHHHHhhHHHHHHHHHHc
Confidence 223456777777888 8999999999999888744
No 344
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=69.73 E-value=10 Score=26.85 Aligned_cols=70 Identities=9% Similarity=0.095 Sum_probs=43.0
Q ss_pred HhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHH
Q 014945 196 LSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWAL 265 (415)
Q Consensus 196 ~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l 265 (415)
.+..++.|+..++....+.++++..+.++.++.......-...-..++..+-....++++.+...|..++
T Consensus 14 fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~ 83 (86)
T PF09324_consen 14 FQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIV 83 (86)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 4455778888888677789999999999999987642111111122333333333455666666665554
No 345
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=69.28 E-value=8.5 Score=28.41 Aligned_cols=44 Identities=27% Similarity=0.445 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHH
Q 014945 258 LTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIP 302 (415)
Q Consensus 258 ~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~ 302 (415)
....+..+..++..+ +....+++.|+++.|+.+|.|++.++...
T Consensus 63 Ld~~Ik~l~~La~~P-~LYp~lv~l~~v~sL~~LL~HeN~DIai~ 106 (108)
T PF08216_consen 63 LDEEIKKLSVLATAP-ELYPELVELGAVPSLLGLLSHENTDIAID 106 (108)
T ss_pred HHHHHHHHHHccCCh-hHHHHHHHcCCHHHHHHHHCCCCcceehc
Confidence 345677788888766 56678999999999999999998776543
No 346
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=68.93 E-value=92 Score=28.31 Aligned_cols=159 Identities=11% Similarity=0.100 Sum_probs=97.3
Q ss_pred hchHHHHHHhh-cCC---ChhHHHHHHHHHHHhccCChHHHHHHHHc--------C---cHHHHHHhcC------CCChh
Q 014945 240 RPALPALERLI-HSN---DDEVLTDACWALSYLSDGTNDKIQAVIEA--------G---VCPRLVELLR------HPSPS 298 (415)
Q Consensus 240 ~~~l~~l~~lL-~~~---d~~v~~~a~~~l~~l~~~~~~~~~~~~~~--------~---~i~~L~~lL~------~~~~~ 298 (415)
.+++..|+..+ ... .-++|..|+.++.....++++....+++. . ...-|+..|- ..++.
T Consensus 33 ~pvi~~LL~~~L~~~~~~~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy 112 (312)
T PF04869_consen 33 VPVIDALLNLMLNENSVQPFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPY 112 (312)
T ss_dssp EEHHHHHHHHHT-TT--S-HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HH
T ss_pred ccHHHHHHHHHhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHH
Confidence 34445554433 222 56789999999998888777665555542 0 1112444443 22333
Q ss_pred hHHHHHHHHHHhhcCChHHHHHHHHC------------CChHHHHHHhcC----CCccchHHHHHHHHHHHhcCCHHHHH
Q 014945 299 VLIPALRTVGNIVTGDDMQTQCIINH------------QALPCLLDLLTQ----NYKKSIKKEACWTISNITAGNVNQIQ 362 (415)
Q Consensus 299 v~~~a~~~l~nl~~~~~~~~~~~~~~------------~~l~~L~~ll~~----~~~~~v~~~a~~~l~nl~~~~~~~~~ 362 (415)
-.--|+.++..+..+++.....+..- ..+..+..+|.. ..+++++..-...|+--..+++..+.
T Consensus 113 ~~wfAa~il~hll~dn~~~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e~p~AV~ 192 (312)
T PF04869_consen 113 RCWFAAVILMHLLRDNPEAKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFECPDAVN 192 (312)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhCCHHHHH
Confidence 34468888999998888666555421 235666666644 33566666666667666678999999
Q ss_pred HHHHcC-CHHHHHHHhcc---CCHHHHHHHHHHHHHHhCC
Q 014945 363 AIIEAG-IIGPLVNLLLN---AEFEIKKEAAWAISNATSG 398 (415)
Q Consensus 363 ~l~~~~-~i~~L~~~l~~---~~~~v~~~a~~aL~nl~~~ 398 (415)
.++..+ .++.|+..... .++-|+.-++..|+-+...
T Consensus 193 ~FL~~~s~l~~Li~~~~~~~~~~~~VqGL~A~LLGicyef 232 (312)
T PF04869_consen 193 DFLSEGSNLQSLIEFSNQSSSEDVLVQGLCAFLLGICYEF 232 (312)
T ss_dssp HHHCSTTHHHHHHHHHS--TCCCHHHHHHHHHHHHHHHHT
T ss_pred HHHcCcchHHHHHHHhhcCCCCcchHHHHHHHHHHHHHHh
Confidence 999764 68999987543 5677888888888888764
No 347
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=68.92 E-value=48 Score=30.61 Aligned_cols=113 Identities=17% Similarity=0.131 Sum_probs=65.1
Q ss_pred hhchHHHHHHhhcC------C-ChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcC----------CCChhhHH
Q 014945 239 TRPALPALERLIHS------N-DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR----------HPSPSVLI 301 (415)
Q Consensus 239 ~~~~l~~l~~lL~~------~-d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~----------~~~~~v~~ 301 (415)
+..++|.++.++.. . +-......+..+..|..+..-.++..+ ..+++.++.++- .+.+.+|.
T Consensus 208 l~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Yl-h~Lip~vltclv~~~l~~~~~~~~h~~LRd 286 (343)
T cd08050 208 LQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYL-HQLIPSVLTCLVAKQLCSRPPDDNHWALRD 286 (343)
T ss_pred chhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhH-HHHHHHHHHHhhhHhhcCCCCCchHHHHHH
Confidence 35667777776632 2 566677777777777766553333222 236777777762 23468999
Q ss_pred HHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccch-HHHHHHHHHHH
Q 014945 302 PALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSI-KKEACWTISNI 353 (415)
Q Consensus 302 ~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v-~~~a~~~l~nl 353 (415)
.|...++.++........ -+...+...+.+.+.++..+.. .-.|...|..+
T Consensus 287 ~AA~ll~~i~~~f~~~y~-~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~l 338 (343)
T cd08050 287 YAARLLAQICRKFSTSYN-TLQPRITRTLLKALLDPKKPLTTHYGAIVGLSAL 338 (343)
T ss_pred HHHHHHHHHHHHcCCCCC-cHHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHh
Confidence 999999999964332211 1122344455555555423333 55555555554
No 348
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=68.30 E-value=1.2e+02 Score=29.59 Aligned_cols=90 Identities=13% Similarity=0.179 Sum_probs=51.7
Q ss_pred hHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhc
Q 014945 299 VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL 378 (415)
Q Consensus 299 v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~ 378 (415)
+...|+..++-++.|.+...+.+ +..+-.++..+ ++.+|+..-.+.+-+...+|.. +++..|-+...
T Consensus 620 ie~~a~Lg~AliamGedig~eMv-----lRhf~h~mhyg-~~hiR~~~PLa~gils~SnPQm-------~vfDtL~r~sh 686 (881)
T COG5110 620 IESLALLGCALIAMGEDIGSEMV-----LRHFSHSMHYG-SSHIRSVLPLAYGILSPSNPQM-------NVFDTLERSSH 686 (881)
T ss_pred HHHHHHhhhHHhhhcchhhHHHH-----HHHhhhHhhcC-cHHHHHHHHHHHhcccCCCcch-------HHHHHHHHhcc
Confidence 34444444445555555433322 23344455555 6677777767766666555542 25666666677
Q ss_pred cCCHHHHHHHHHHHHHHhCCCCH
Q 014945 379 NAEFEIKKEAAWAISNATSGGSN 401 (415)
Q Consensus 379 ~~~~~v~~~a~~aL~nl~~~~~~ 401 (415)
+++.++...++.+++-+-.+-..
T Consensus 687 d~dl~v~~ntIfamGLiGAGT~N 709 (881)
T COG5110 687 DGDLNVIINTIFAMGLIGAGTLN 709 (881)
T ss_pred ccchhHHHHHHHHhhccccCcch
Confidence 77777777777777766555443
No 349
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=67.88 E-value=42 Score=34.67 Aligned_cols=161 Identities=14% Similarity=0.135 Sum_probs=95.2
Q ss_pred CCchhHHHhcCchHHHHHhhcCCC-C------hHHHHHHHHHHHHHhCCCchhhHHHHhC--------CChHHHHHhhCC
Q 014945 104 SPPINEVIQSGVVPRFIEFLSRDD-F------PQLQFEAAWALTNIASGTSENTRVVIDH--------GAVPIFVRLLSS 168 (415)
Q Consensus 104 ~~~~~~~~~~g~i~~L~~ll~~~~-~------~~i~~~a~~~L~~l~~~~~~~~~~~~~~--------g~i~~L~~ll~~ 168 (415)
-++.+.+...+.+..++++..-+. + .+....|+.+|+-+..- |+.+..+..+ .+|..++..-..
T Consensus 591 w~~aenflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~i-P~iq~~La~~~~~n~~aydGiaIiL~~a~g 669 (1516)
T KOG1832|consen 591 WPAAENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSI-PDIQKALAHATLSNNRAYDGIAIILDAANG 669 (1516)
T ss_pred chHHHHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEec-chHHHHHHHHHhhcccccCceEEEeecccc
Confidence 344555677778888888776432 1 35667788888777665 5555444431 134444443221
Q ss_pred ----CCHHHHHHHHHHHHHhcCCCchhHHHHHhcCCh--HHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhch
Q 014945 169 ----PTDDVREQAVWALGNVAGDSPKCRDLVLSNGAL--MPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPA 242 (415)
Q Consensus 169 ----~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i--~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~ 242 (415)
.+++++..|+.+|-|.....|.++...+..=+- ..=-..+...+.....++.+.-.++-.++ ..+
T Consensus 670 ~~~i~Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~---------ndG 740 (1516)
T KOG1832|consen 670 SNSIVDPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRG---------NDG 740 (1516)
T ss_pred cccccCHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhc---------Ccc
Confidence 379999999999999998887766554321000 00001111222233444444444444443 456
Q ss_pred HHHHHHhhcCCC-----hhHHHHHHHHHHHhccCChH
Q 014945 243 LPALERLIHSND-----DEVLTDACWALSYLSDGTND 274 (415)
Q Consensus 243 l~~l~~lL~~~d-----~~v~~~a~~~l~~l~~~~~~ 274 (415)
+..|+++|+... ..++.-||.+|.-|+..+..
T Consensus 741 IkiLl~Ll~~k~P~t~aD~IRalAc~~L~GLaR~~tV 777 (1516)
T KOG1832|consen 741 IKILLKLLQYKNPPTTADCIRALACRVLLGLARDDTV 777 (1516)
T ss_pred HHHHHHHHhccCCCCcHHHHHHHHHHHHhccccCcHH
Confidence 778888887543 45888999999988877653
No 350
>KOG3132 consensus m3G-cap-specific nuclear import receptor (Snurportin1) [RNA processing and modification]
Probab=67.60 E-value=3.3 Score=34.98 Aligned_cols=45 Identities=27% Similarity=0.403 Sum_probs=36.0
Q ss_pred cHHHhhhccCCCCchHHHHhHHHHHHHHHHHhhhHHHHhhhhccc
Q 014945 9 TEVRRSKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGL 53 (415)
Q Consensus 9 ~~~~~~~~k~~~~~~~~r~~r~~~~~~lRk~~r~~~~~~~R~~~~ 53 (415)
+.+|...||+-.+..|.|.||++...++.|.+|-+...+.|+...
T Consensus 23 ~hpR~sQykn~~s~aeQ~arrr~~llelQks~r~D~~~~~r~lA~ 67 (325)
T KOG3132|consen 23 SHPRQSQYKNLTSDAEQRARRRASLLELQKSSRPDVDPEIRSLAV 67 (325)
T ss_pred cCchhhhhhhhhhHHHHHHHHHHHHHHhhhcCCCCccHHHHhhcc
Confidence 458999999944556667667677999999999999999998644
No 351
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=66.57 E-value=6.8 Score=28.92 Aligned_cols=42 Identities=29% Similarity=0.347 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCCCCHHHH
Q 014945 132 QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVR 174 (415)
Q Consensus 132 ~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~ 174 (415)
....+..+..++.. |+.-..+++.|+++.|+.+|.++|..+.
T Consensus 63 Ld~~Ik~l~~La~~-P~LYp~lv~l~~v~sL~~LL~HeN~DIa 104 (108)
T PF08216_consen 63 LDEEIKKLSVLATA-PELYPELVELGAVPSLLGLLSHENTDIA 104 (108)
T ss_pred HHHHHHHHHHccCC-hhHHHHHHHcCCHHHHHHHHCCCCccee
Confidence 34556677777774 7888889999999999999999887664
No 352
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.29 E-value=9 Score=34.68 Aligned_cols=62 Identities=8% Similarity=0.063 Sum_probs=52.3
Q ss_pred HHHHHHHHhCCCchhhHHHHhCCChHHHHHh--hCCCCHHHHHHHHHHHHHhcCCCchhHHHHH
Q 014945 135 AAWALTNIASGTSENTRVVIDHGAVPIFVRL--LSSPTDDVREQAVWALGNVAGDSPKCRDLVL 196 (415)
Q Consensus 135 a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~l--l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~ 196 (415)
..+.+++++...++..+.+.+.|+++.++.- +++.+|-+++..+.|+.++..++.++++.+.
T Consensus 376 vir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~ 439 (478)
T KOG2676|consen 376 VIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIG 439 (478)
T ss_pred HHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHh
Confidence 5668899999889999999999999877763 4557899999999999999998887766654
No 353
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=65.94 E-value=2.2e+02 Score=31.51 Aligned_cols=113 Identities=13% Similarity=0.177 Sum_probs=73.1
Q ss_pred hhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHc--CcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChH
Q 014945 239 TRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA--GVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM 316 (415)
Q Consensus 239 ~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~--~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~ 316 (415)
+.+++|.|-.-|.+++..+|..|...++.+......... +. ......+.-+.+.+..+|..++....++...++.
T Consensus 257 l~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~---~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~ 333 (1266)
T KOG1525|consen 257 LLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLS---ETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPS 333 (1266)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhc---ccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCch
Confidence 467788888888899999999999999999876554322 11 2344455555667778888888777776655442
Q ss_pred HHHHHH------------------------------HCC----ChHHHHHHhcCCCccchHHHHHHHHHHHhc
Q 014945 317 QTQCII------------------------------NHQ----ALPCLLDLLTQNYKKSIKKEACWTISNITA 355 (415)
Q Consensus 317 ~~~~~~------------------------------~~~----~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~ 355 (415)
...... ... ++..+.+-+.+. ...||+.|...|..+-.
T Consensus 334 ~~~~~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~~l~~~~~ll~~~~eR~rDK-k~~VR~~Am~~LaqlYk 405 (1266)
T KOG1525|consen 334 IAKASTILLALRERDLDEDVRVRTQVVIVACDVMKFKLVYIPLLLKLVAERLRDK-KIKVRKQAMNGLAQLYK 405 (1266)
T ss_pred hhhHHHHHHHHHhhcCChhhhheeeEEEEEeehhHhhhhhhHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHH
Confidence 211111 111 233334444566 88999999988875543
No 354
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=65.91 E-value=1.4e+02 Score=29.23 Aligned_cols=144 Identities=14% Similarity=0.160 Sum_probs=84.0
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCC-------CChHHHHHHHHHHHHHhC
Q 014945 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRD-------DFPQLQFEAAWALTNIAS 144 (415)
Q Consensus 72 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~-------~~~~i~~~a~~~L~~l~~ 144 (415)
-...+.+.+-++|+..+..|+..|+. .+-++. ++|.|+.++... ++-......++.+..|..
T Consensus 208 Yy~~It~a~~g~~~~~r~eAL~sL~T------DsGL~~-----LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~ 276 (576)
T KOG2549|consen 208 YYKEITEACTGSDEPLRQEALQSLET------DSGLQQ-----LLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLD 276 (576)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhhcc------CccHHH-----HHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhc
Confidence 35677777778888888888877754 222333 368888887653 224566667777777776
Q ss_pred CCchhhHHHHhCCChHHHHHhhCC----------CCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccc-hh
Q 014945 145 GTSENTRVVIDHGAVPIFVRLLSS----------PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEH-AK 213 (415)
Q Consensus 145 ~~~~~~~~~~~~g~i~~L~~ll~~----------~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~-~~ 213 (415)
...-+.+..+ ...+|.++.++-+ .+..+|+.|+..+..++.+-...-+. ++..++..+...+.+. ..
T Consensus 277 Np~i~lepYl-h~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~-L~~Rit~tl~k~l~D~~~~ 354 (576)
T KOG2549|consen 277 NPNIFLEPYL-HQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNN-LQPRITRTLSKALLDNKKP 354 (576)
T ss_pred CCccchhhHH-HHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHHhcCCCCC
Confidence 4322222222 2567888876643 24568888888888887654432222 3333555566655333 23
Q ss_pred HhHHHHHHHHHHHhh
Q 014945 214 LSMLRNATWTLSNFC 228 (415)
Q Consensus 214 ~~~~~~a~~~l~~l~ 228 (415)
.....=++..|..|.
T Consensus 355 ~st~YGai~gL~~lg 369 (576)
T KOG2549|consen 355 LSTHYGAIAGLSELG 369 (576)
T ss_pred chhhhhHHHHHHHhh
Confidence 333444444444443
No 355
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=65.28 E-value=99 Score=27.35 Aligned_cols=62 Identities=23% Similarity=0.359 Sum_probs=41.9
Q ss_pred hhccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhC
Q 014945 69 KLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIAS 144 (415)
Q Consensus 69 ~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~ 144 (415)
.++.+..|.+.|+.+|+..+ .+..++... .+++.+++|.|+..-. + +.+-..++..|.+++.
T Consensus 11 cl~~LkdL~r~lr~dd~~~~-~v~r~lg~~----------~iv~~DLiPiL~~~~~--~-~~l~~~~l~LLV~LT~ 72 (266)
T PF04821_consen 11 CLECLKDLKRFLRRDDEDQR-DVRRQLGEW----------NIVQKDLIPILISYKD--D-DKLFLACLRLLVNLTW 72 (266)
T ss_pred HHHHHHHHHHHHHHhCcchH-HHHHHHHHh----------chhhhhHHHHHHhccC--c-hHHHHHHHHHHHHhCC
Confidence 44678889999988777655 333333332 2445566776666544 3 7888999999999886
No 356
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=64.59 E-value=34 Score=26.68 Aligned_cols=49 Identities=18% Similarity=0.242 Sum_probs=34.8
Q ss_pred hhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHH
Q 014945 255 DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV 307 (415)
Q Consensus 255 ~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l 307 (415)
.++...++.++......-+ ...+.+.++++.+..+|.++ ..+..|+.+|
T Consensus 100 ~~~~~~~L~~l~s~i~~~~--~~~i~~~~~l~~~~~~l~~~--~~~~~A~~cl 148 (148)
T PF08389_consen 100 EELVKAALKCLKSWISWIP--IELIINSNLLNLIFQLLQSP--ELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHTTTS---HHHHHSSSHHHHHHHHTTSC--CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCC--HHHhccHHHHHHHHHHcCCH--HHHHHHHHhC
Confidence 6778888888888776543 34566778889999988444 4577777664
No 357
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=64.26 E-value=94 Score=26.72 Aligned_cols=130 Identities=12% Similarity=0.121 Sum_probs=82.3
Q ss_pred hhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCC---------C---------hhhHHHHHHHHHHhhcCChH
Q 014945 255 DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP---------S---------PSVLIPALRTVGNIVTGDDM 316 (415)
Q Consensus 255 ~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~---------~---------~~v~~~a~~~l~nl~~~~~~ 316 (415)
......+|..+..|...++. ...+.+.++++.+.+.|..- + ......=...||.++.. +.
T Consensus 78 ~~y~~vGc~L~~~Ll~~~eG-~~~l~~~~ll~qia~~L~~~d~~~g~~~~~~lfs~~~l~~tl~~~Yf~~IG~lS~~-~~ 155 (226)
T PF14666_consen 78 QKYVRVGCQLLETLLSSPEG-IKYLSESKLLPQIAECLAQVDPMSGITAHDPLFSPQRLSTTLSRGYFLFIGVLSST-PN 155 (226)
T ss_pred hHHHHHHHHHHHHHHcCcHH-HHHHHHccHHHHHHHHHHHHhhhcCCcccccccCHHHHHhhHHHHHHHHHHHHhCC-hh
Confidence 44556677777777766543 34556778888877777422 1 11233345577888664 45
Q ss_pred HHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHh
Q 014945 317 QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT 396 (415)
Q Consensus 317 ~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~ 396 (415)
..+.+-+.+++..+..+...+..+.+ ...++.++=-+.+.+... .|-+.|..++..+|..|..-|..++
T Consensus 156 Gl~lLe~~~if~~l~~i~~~~~~~~l---~klil~~LDY~~~~~~R~--------iLsKaLt~~s~~iRl~aT~~L~~ll 224 (226)
T PF14666_consen 156 GLKLLERWNIFTMLYHIFSLSSRDDL---LKLILSSLDYSVDGHPRI--------ILSKALTSGSESIRLYATKHLRVLL 224 (226)
T ss_pred HHHHHHHCCHHHHHHHHHccCchHHH---HHHHHhhCCCCCccHHHH--------HHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 66777788999999999987623222 223455543333333333 3445788899999999999988775
Q ss_pred C
Q 014945 397 S 397 (415)
Q Consensus 397 ~ 397 (415)
.
T Consensus 225 r 225 (226)
T PF14666_consen 225 R 225 (226)
T ss_pred c
Confidence 3
No 358
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=64.03 E-value=21 Score=25.21 Aligned_cols=67 Identities=12% Similarity=0.123 Sum_probs=44.5
Q ss_pred HHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHh----ccCCHHHHHHHHHHHH
Q 014945 322 INHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLL----LNAEFEIKKEAAWAIS 393 (415)
Q Consensus 322 ~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l----~~~~~~v~~~a~~aL~ 393 (415)
.+..++.++..++.+..+.++|.....++.++.....+.+ .+| -+.++.++ .+++..+...|..++.
T Consensus 14 fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i----~SG-W~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 14 FQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENI----KSG-WKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHH----Hhc-cHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 3446677888887666588999999999999997554443 343 34444444 4456677776666553
No 359
>PF06743 FAST_1: FAST kinase-like protein, subdomain 1; InterPro: IPR010622 This entry represents a conserved region of eukaryotic Fas-activated serine/threonine (FAST) kinases that contains several conserved leucine residues. FAST kinase is rapidly activated during Fas-mediated apoptosis, when it phosphorylates TIA-1, a nuclear RNA-binding protein that has been implicated as an effector of apoptosis []. Note that many family members are hypothetical proteins.; GO: 0004672 protein kinase activity
Probab=63.82 E-value=31 Score=23.26 Aligned_cols=68 Identities=18% Similarity=0.221 Sum_probs=46.9
Q ss_pred HHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHH
Q 014945 219 NATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPR 287 (415)
Q Consensus 219 ~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~ 287 (415)
..+|+.+.|--. |.........+...+...+..-++....+++|.++.+-..+.+.++.+.+..++..
T Consensus 3 ~il~~fa~LNy~-P~~~~~f~~~~~~~L~~~l~~~~p~~ll~~v~Sl~~l~~~p~~~l~~vf~~~Fl~~ 70 (71)
T PF06743_consen 3 SILLPFARLNYQ-PPNAEEFFEKLIERLESYLDEFSPEDLLDLVWSLCLLQRFPEDLLNKVFSPDFLQK 70 (71)
T ss_pred HHHHHHHhcCCC-CCCHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhCCHHHHHHHcCHHHHhh
Confidence 345666666533 44444444566667777777778999999999999998888887777766655443
No 360
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=63.31 E-value=52 Score=24.35 Aligned_cols=87 Identities=15% Similarity=0.229 Sum_probs=55.0
Q ss_pred CcHHHHHHhcCC----CChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCC-CccchHHHHHHHHHHHhc-C
Q 014945 283 GVCPRLVELLRH----PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN-YKKSIKKEACWTISNITA-G 356 (415)
Q Consensus 283 ~~i~~L~~lL~~----~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~~v~~~a~~~l~nl~~-~ 356 (415)
|++..+...+.+ .+...+..+++.++.+..-...... .+.|.++..|++. ..++++..|+.+-..+.. -
T Consensus 11 gil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~-----~~~pQI~a~L~sal~~~~l~~~al~~W~~fi~~L 85 (107)
T PF08064_consen 11 GILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHIS-----SARPQIMACLQSALEIPELREEALSCWNCFIKTL 85 (107)
T ss_pred HHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHC
Confidence 455555555554 4556788899999999874443333 4566677777654 245788888887777776 3
Q ss_pred CHHHHHHHHHcCCHHHHHH
Q 014945 357 NVNQIQAIIEAGIIGPLVN 375 (415)
Q Consensus 357 ~~~~~~~l~~~~~i~~L~~ 375 (415)
+++....+++. ++..++.
T Consensus 86 ~~~~l~~ll~~-~~~~l~~ 103 (107)
T PF08064_consen 86 DEEDLGPLLDQ-IFAILLP 103 (107)
T ss_pred CHHHHHHHHHH-HHHHHHH
Confidence 56666666654 3334433
No 361
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=62.90 E-value=46 Score=24.67 Aligned_cols=86 Identities=15% Similarity=0.227 Sum_probs=53.4
Q ss_pred CcHHHHHHhcCCCC----hhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCC-CccchHHHHHHHHHHHhc-C
Q 014945 283 GVCPRLVELLRHPS----PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN-YKKSIKKEACWTISNITA-G 356 (415)
Q Consensus 283 ~~i~~L~~lL~~~~----~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~~v~~~a~~~l~nl~~-~ 356 (415)
|++..+.+.+.+.+ ..-+..++++++.+..-...... .+.|.++.+|++. ..++++..|+.+-..+.. -
T Consensus 11 Gil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~-----~a~pQI~acL~saL~~~eL~~~al~~W~~~i~~L 85 (107)
T smart00802 11 GILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHIS-----SALPQIMACLQSALEIPELRSLALRCWHVLIKTL 85 (107)
T ss_pred HHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhC
Confidence 56666666665544 24478899999888864332222 3456666666554 255788888888777776 3
Q ss_pred CHHHHHHHHHcCCHHHHH
Q 014945 357 NVNQIQAIIEAGIIGPLV 374 (415)
Q Consensus 357 ~~~~~~~l~~~~~i~~L~ 374 (415)
+++....+++. .+..++
T Consensus 86 ~~~~l~~ll~~-~~~~i~ 102 (107)
T smart00802 86 KEEELGPLLDQ-IFAAIL 102 (107)
T ss_pred CHHHHHHHHHH-HHHHHH
Confidence 55666666664 333333
No 362
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=62.14 E-value=41 Score=26.16 Aligned_cols=49 Identities=22% Similarity=0.274 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHH
Q 014945 85 RNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWAL 139 (415)
Q Consensus 85 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L 139 (415)
......++.++...++ --+...+...++++.+.+++.++ .++..|+.||
T Consensus 100 ~~~~~~~L~~l~s~i~---~~~~~~i~~~~~l~~~~~~l~~~---~~~~~A~~cl 148 (148)
T PF08389_consen 100 EELVKAALKCLKSWIS---WIPIELIINSNLLNLIFQLLQSP---ELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHTT---TS-HHHHHSSSHHHHHHHHTTSC---CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH---hCCHHHhccHHHHHHHHHHcCCH---HHHHHHHHhC
Confidence 7788889999999875 46667788888999999999654 4588888775
No 363
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=61.63 E-value=24 Score=27.83 Aligned_cols=101 Identities=15% Similarity=0.090 Sum_probs=52.6
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhH--HHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchh
Q 014945 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINE--VIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN 149 (415)
Q Consensus 72 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~--~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~ 149 (415)
....++++|+.+........+..|.+-. ++-.+. -++.+++..+++-=.... .--+..|+..|+.+..+.
T Consensus 23 Qt~~lielLk~~~~~~~~~lldLL~~RV----~PGVD~AA~VKA~FL~~ia~g~~~~~-~Is~~~Av~LLGtM~GGY--- 94 (154)
T PF11791_consen 23 QTAELIELLKNPPAGEEAFLLDLLTNRV----PPGVDEAAYVKAEFLAAIAKGEISSP-LISPAEAVELLGTMLGGY--- 94 (154)
T ss_dssp HHHHHHHHHHS--TT-HHHHHHHHHHSS------TT-HHHHHHHHHHHHHHTTSS-BT-TB-HHHHHHHHTTS-SST---
T ss_pred HHHHHHHHHhCCCCccHHHHHHHHHhcC----CCCCChHHHHHHHHHHHHHcCCccCC-CcCHHHHHHHHhhccCCC---
Confidence 4567888888655433334444444432 232322 334333433332211111 223567777887777652
Q ss_pred hHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCC
Q 014945 150 TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS 188 (415)
Q Consensus 150 ~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~ 188 (415)
-+..|+.+|.+.+.++...|..+|.+..--.
T Consensus 95 --------NV~~LI~~L~~~d~~lA~~Aa~aLk~TlLvy 125 (154)
T PF11791_consen 95 --------NVQPLIDLLKSDDEELAEEAAEALKNTLLVY 125 (154)
T ss_dssp --------THHHHHHGG--G-TTTHHHHHHHHHT--TTC
T ss_pred --------cHHHHHHHHcCCcHHHHHHHHHHHHhhHHHH
Confidence 2889999999999999999999999865433
No 364
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=60.67 E-value=9.3 Score=20.08 Aligned_cols=14 Identities=14% Similarity=0.404 Sum_probs=11.1
Q ss_pred hHHHHHHHHHHHhc
Q 014945 342 IKKEACWTISNITA 355 (415)
Q Consensus 342 v~~~a~~~l~nl~~ 355 (415)
||..|+|+|+++..
T Consensus 1 VR~~Aa~aLg~igd 14 (27)
T PF03130_consen 1 VRRAAARALGQIGD 14 (27)
T ss_dssp HHHHHHHHHGGG-S
T ss_pred CHHHHHHHHHHcCC
Confidence 68899999998874
No 365
>PLN03205 ATR interacting protein; Provisional
Probab=60.28 E-value=1.5e+02 Score=27.74 Aligned_cols=160 Identities=17% Similarity=0.209 Sum_probs=87.1
Q ss_pred hchHHHHHHhhcCCChhHHHHHHHHHHHhcc---CChHHHHHHHHcCcHHH---HHHh-cCCCChhhHHHHHHHHHHhhc
Q 014945 240 RPALPALERLIHSNDDEVLTDACWALSYLSD---GTNDKIQAVIEAGVCPR---LVEL-LRHPSPSVLIPALRTVGNIVT 312 (415)
Q Consensus 240 ~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~---~~~~~~~~~~~~~~i~~---L~~l-L~~~~~~v~~~a~~~l~nl~~ 312 (415)
..++++|+.+-.-++..+...+++.+..+.. ++....+.-.+.+.+.. +.+. ..+.++.++..|+.++.-|..
T Consensus 322 qtLlEaLLdLC~v~n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NWvsLfElm~QiAv~~TEE~VrLEAvSIMnVIlm 401 (652)
T PLN03205 322 KSLVEPLLDLCKAETAVLVHRSLRVLHVLLEHICGDEKRFEASWDANWHSLFELMNQIASIRTEEDVKLEALSIMNIIVM 401 (652)
T ss_pred HHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHhCCcccccccccccHHHHHHHHHHHHhccchhheeeehhhhhHHhhh
Confidence 3444555555555555555555555544332 12222222222333221 2222 135667788889888887776
Q ss_pred CChHHH--HHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHH-----------Hc------------
Q 014945 313 GDDMQT--QCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAII-----------EA------------ 367 (415)
Q Consensus 313 ~~~~~~--~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~-----------~~------------ 367 (415)
..+.++ +.+....+++.+..+|+......|+++|...+.-+.. +|.....+. ++
T Consensus 402 ssna~~eREkFG~~~VfESiaQLLkkEaGl~VqKealhLLfLLLN-CpklL~iFcSg~~e~~~ad~eNd~~~n~st~k~f 480 (652)
T PLN03205 402 STDAYTARESFVSKEVFESISLLLRKEGGLHVRKEAIHLFYLLLN-CPKLYDRFDSLHEEKNSSDTENDSEGNFFALEAF 480 (652)
T ss_pred ccchhHHHHHhcchHHHHHHHHHHHHhccchhhHHHHHHHHHHHc-CcHHHHHHhcCCccccccccccccccccccHHHH
Confidence 655333 3333445677788888766467899988876553321 111111111 00
Q ss_pred -CCHHHHHHHhcc-----CCHHHHHHHHHHHHHHhCCCC
Q 014945 368 -GIIGPLVNLLLN-----AEFEIKKEAAWAISNATSGGS 400 (415)
Q Consensus 368 -~~i~~L~~~l~~-----~~~~v~~~a~~aL~nl~~~~~ 400 (415)
.++..|-+++.. .+.++++.|...|.-++..|.
T Consensus 481 SsIlegLAeCiac~~~s~~dIeLck~aiimLAflASSGk 519 (652)
T PLN03205 481 GKIFEGLADCLTSPRKTSEDLELCRNVIMILALAASSGN 519 (652)
T ss_pred HHHHHHHHHHHcCCCCChhhhHHHHHHHHHHHHHHhcCC
Confidence 134455555543 467888999999999987764
No 366
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=59.00 E-value=75 Score=29.45 Aligned_cols=97 Identities=11% Similarity=0.065 Sum_probs=72.9
Q ss_pred CCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCH-HHHHHHHHcCCHH
Q 014945 293 RHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV-NQIQAIIEAGIIG 371 (415)
Q Consensus 293 ~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~-~~~~~l~~~~~i~ 371 (415)
..++|.+...+|.-+++=-.+.. .++..+.+-|.+. ++.|...|.-.+..+..++. ..+..+....+..
T Consensus 22 T~enW~~IlDvCD~v~~~~~~~k---------d~lk~i~KRln~~-dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~ 91 (462)
T KOG2199|consen 22 TSENWSLILDVCDKVGSDPDGGK---------DCLKAIMKRLNHK-DPHVVLQALTLLDACVANCGKRFRLEVSSRDFTT 91 (462)
T ss_pred ccccHHHHHHHHHhhcCCCcccH---------HHHHHHHHHhcCC-CcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHH
Confidence 34577777777776655432222 4577888999999 99999999999999988543 4455666778888
Q ss_pred HHHHHhc-cCCHHHHHHHHHHHHHHhCCC
Q 014945 372 PLVNLLL-NAEFEIKKEAAWAISNATSGG 399 (415)
Q Consensus 372 ~L~~~l~-~~~~~v~~~a~~aL~nl~~~~ 399 (415)
.|..++. ...++|++.....+.+.+...
T Consensus 92 el~al~~~~~h~kV~~k~~~lv~eWsee~ 120 (462)
T KOG2199|consen 92 ELRALIESKAHPKVCEKMRDLVKEWSEEF 120 (462)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHHHHHh
Confidence 9999988 578899988888888877543
No 367
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=57.65 E-value=1.4e+02 Score=26.97 Aligned_cols=84 Identities=13% Similarity=0.174 Sum_probs=62.4
Q ss_pred cCcHHHHHHhcCCC--ChhhHHHHHHHHHHhhcCChH-HHH-HHHHCCChHHHHHHhcCCCc--cchHHHHHHHHHHHhc
Q 014945 282 AGVCPRLVELLRHP--SPSVLIPALRTVGNIVTGDDM-QTQ-CIINHQALPCLLDLLTQNYK--KSIKKEACWTISNITA 355 (415)
Q Consensus 282 ~~~i~~L~~lL~~~--~~~v~~~a~~~l~nl~~~~~~-~~~-~~~~~~~l~~L~~ll~~~~~--~~v~~~a~~~l~nl~~ 355 (415)
.|.+..++..+..+ +...+-.-+.++-.+..+.+. ..+ .+.+.|+++.++..+-++.. ..+...+.-.||-+..
T Consensus 94 ~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLRg~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v~Q~~FDLLGELiK 173 (303)
T PF12463_consen 94 KGLLSKIIHVLKKEPIDSSYRFWLARCVESFLRGATSYADQAFLAERGLLEHLVSEILSDGCMSQEVLQSNFDLLGELIK 173 (303)
T ss_pred ccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHcCCCcHHHHHHHHhcchHHHHHHHHhcCccchHHHHHHHHHHHHHHHC
Confidence 47788888887543 456788888899999988776 333 56677999999987765522 2578888899999999
Q ss_pred CCHHHHHHHH
Q 014945 356 GNVNQIQAII 365 (415)
Q Consensus 356 ~~~~~~~~l~ 365 (415)
+++.....+-
T Consensus 174 ~n~~~f~~l~ 183 (303)
T PF12463_consen 174 FNRDAFQRLN 183 (303)
T ss_pred CCHHHHHHHH
Confidence 8877665543
No 368
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=57.50 E-value=54 Score=25.72 Aligned_cols=74 Identities=7% Similarity=0.015 Sum_probs=51.7
Q ss_pred ccHHHHHHhhcC-CCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHH-HHHhhcCCC--ChHHHHHHHHHHHHHhC
Q 014945 71 ESLPAMVAGVWS-DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPR-FIEFLSRDD--FPQLQFEAAWALTNIAS 144 (415)
Q Consensus 71 ~~i~~l~~~l~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~-L~~ll~~~~--~~~i~~~a~~~L~~l~~ 144 (415)
+++..+.+.|++ .++.++..|+..+-.+...-+.....++...+++.. |++++.... ...++..++..+...+.
T Consensus 38 ~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~ 115 (141)
T cd03565 38 DAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWAD 115 (141)
T ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHH
Confidence 356777777774 588888889888888776543344456667788887 888887421 15778888777766654
No 369
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=56.56 E-value=4.3e+02 Score=32.69 Aligned_cols=176 Identities=8% Similarity=0.061 Sum_probs=90.2
Q ss_pred CChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHH-----HHHhhcCCChhHHHHHHHHHHHhccCC-
Q 014945 199 GALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPA-----LERLIHSNDDEVLTDACWALSYLSDGT- 272 (415)
Q Consensus 199 g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~-----l~~lL~~~d~~v~~~a~~~l~~l~~~~- 272 (415)
+++.+++.-+ .+++..++..+..+|.+++............+.-.. ..+-+..-.-.++...+.++.++....
T Consensus 1126 ~~~~~lv~eL-~npN~~VR~~~~~~L~~i~~~s~~~v~~L~~p~K~~ll~p~f~k~lr~~p~~~qig~vd~~~fC~~l~p 1204 (3550)
T KOG0889|consen 1126 NVFSPLVLEL-FNPNSDVREFSQKLLRLISELSGKSVVKLLEPFKDVLLSPIFKKPLRALPFTIQIGHLDAITFCLSLGP 1204 (3550)
T ss_pred HHHHHHHHHH-cCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhccccccccccCCHHHHhhhHHHHHHHHHcCC
Confidence 4667777777 667779999999999999877522222222222222 222222223333333333333332211
Q ss_pred ------hHHHHHHHHcCcH-----HH---HHHhcCCC----ChhhHHHHHHHHHHhhcCChHHHHHH--HHCCChHHHHH
Q 014945 273 ------NDKIQAVIEAGVC-----PR---LVELLRHP----SPSVLIPALRTVGNIVTGDDMQTQCI--INHQALPCLLD 332 (415)
Q Consensus 273 ------~~~~~~~~~~~~i-----~~---L~~lL~~~----~~~v~~~a~~~l~nl~~~~~~~~~~~--~~~~~l~~L~~ 332 (415)
++........+.+ .. +....... ....+..+...++......+...... ...+.+..+.+
T Consensus 1205 ~~f~~~~~l~~l~~~~~~La~~~~~~~~~i~k~~~~k~~~~l~~Lr~~ci~ll~~~~~~~d~~~~~~~~~r~kii~v~fk 1284 (3550)
T KOG0889|consen 1205 CLFDFTEELYRLKRFLIALADAEEDELATIQKTSDYKNSSSLVRLRVACIKLLAACMKLSDFRTPQHAELREKIIAVFFK 1284 (3550)
T ss_pred cccCchHHHHHHHHHHHHhhhhhhhhhhhhhcccccccccccccchhHHHHHHHHHHhcccccchhhhhhhhHHHHHHHH
Confidence 1111111100000 00 11221111 22356677777776665444221111 22367788888
Q ss_pred HhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHH
Q 014945 333 LLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNL 376 (415)
Q Consensus 333 ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~ 376 (415)
.+..+ .+++...+..++..+...+...-...+..+.=|.|..+
T Consensus 1285 ~l~~~-~~Ei~~~~~~~l~~v~~~~~~~~ke~lq~~lrplL~~l 1327 (3550)
T KOG0889|consen 1285 SLYKR-SSELIEVALEGLRKVLAQDVKLPKELLQSHLRPLLMNL 1327 (3550)
T ss_pred HHcCC-hHHHHHHHHHHHHhhhhccccccHHHHHhhHHHHHHhh
Confidence 88888 88898888888888887655544555555444555444
No 370
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=56.22 E-value=1.1e+02 Score=24.77 Aligned_cols=90 Identities=12% Similarity=0.169 Sum_probs=58.9
Q ss_pred HHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHH-HhccCC--HHHHHHHHHHHHHHh
Q 014945 320 CIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVN-LLLNAE--FEIKKEAAWAISNAT 396 (415)
Q Consensus 320 ~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~-~l~~~~--~~v~~~a~~aL~nl~ 396 (415)
.++...+.+.+.+.+.++ ++.+-..++.++..+...-....+.=++. +++.++. ++.++. ..-|..++.++..++
T Consensus 68 ~~lk~~l~~~Ll~~~~~~-~~~i~~~slri~~~l~~~~~~~Lk~ele~-~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~ 145 (168)
T PF12783_consen 68 NLLKDDLCPALLKNLSSS-DFPIFSRSLRIFLTLLSRFRSHLKLELEV-FLSHIILRILESDNSSLWQKELALEILRELC 145 (168)
T ss_pred HHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHccCCCcHHHHHHHHHHHHHHH
Confidence 355567888888888888 78888899999988886433322222222 3555555 555443 567788999999999
Q ss_pred CCCCHHHHHHHHHHhhCCC
Q 014945 397 SGGSNEQIKYKFFYVSRTC 415 (415)
Q Consensus 397 ~~~~~~~~~~l~~~~~~g~ 415 (415)
.. +..+..+ |+..+|
T Consensus 146 ~~--p~~l~~l--f~NYDC 160 (168)
T PF12783_consen 146 KD--PQFLVDL--FVNYDC 160 (168)
T ss_pred hC--hhHHHHH--HHHcCC
Confidence 64 5555444 255544
No 371
>PF10257 RAI16-like: Retinoic acid induced 16-like protein; InterPro: IPR019384 This entry represents a conserved sequence region found in a family of proteins described as retinoic acid-induced protein 16-like proteins. These proteins are conserved from worms to humans, but their function is not known.
Probab=55.42 E-value=1.8e+02 Score=27.07 Aligned_cols=128 Identities=12% Similarity=0.112 Sum_probs=84.3
Q ss_pred HHHHHcCcHHHHHHhcCC-CChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHH-hcCC---C-ccchHHHHHHHH
Q 014945 277 QAVIEAGVCPRLVELLRH-PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDL-LTQN---Y-KKSIKKEACWTI 350 (415)
Q Consensus 277 ~~~~~~~~i~~L~~lL~~-~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~l-l~~~---~-~~~v~~~a~~~l 350 (415)
+.+.+.+++..|..+-.. ..+.++..+++.+.++....+.. .+....+..++.++ +... . .+.+.++-...+
T Consensus 3 Eyll~~~Il~~L~~la~~d~p~g~r~~~l~f~~~Ll~~~~~p--lL~h~~v~~pl~~L~l~~c~~~~~~~~~E~~lV~lL 80 (353)
T PF10257_consen 3 EYLLQHQILETLCTLAKADYPPGMRQEVLKFFSRLLSQSQQP--LLPHRSVHRPLQRLLLRSCGESRSASPTEKELVELL 80 (353)
T ss_pred HHHHHhChHHHHHHHHcccCChHHHHHHHHHHHHHHHhcccc--cccchhhhhhHHHHHHHHhCCCCCCchHHHHHHHHH
Confidence 456777888888888654 45788999999999998765422 22233566667777 5332 1 344666667777
Q ss_pred HHHhc---CCHHHHHHHHHcC--------------------------CHHHHHHHhccCCHHHHHHHHHHHHHHhCCC--
Q 014945 351 SNITA---GNVNQIQAIIEAG--------------------------IIGPLVNLLLNAEFEIKKEAAWAISNATSGG-- 399 (415)
Q Consensus 351 ~nl~~---~~~~~~~~l~~~~--------------------------~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~~-- 399 (415)
..+|. .+|.....+.+.+ ++..|+..++++ -++-..|..+|--+....
T Consensus 81 ~~lc~~i~~~P~ll~~ff~~~~~~~~~~~~~~~~~~~~~~~~~~~f~Lf~~Ll~~vh~e-g~ig~~Are~LLll~~l~~~ 159 (353)
T PF10257_consen 81 NTLCSKIRKDPSLLNFFFESSPSQAQEEDSESSSSSFAGRTGKSEFLLFSLLLPYVHSE-GRIGDFAREGLLLLMSLASE 159 (353)
T ss_pred HHHHHHHHhCHHHHHHHhcCCccccccccccCcccccCCCCCCccchHHHHHHHHhCcC-cHHHHHHHHHHHHHHhCCCC
Confidence 77775 5677666665422 356777777765 567777888888777665
Q ss_pred CHHHHHHH
Q 014945 400 SNEQIKYK 407 (415)
Q Consensus 400 ~~~~~~~l 407 (415)
++....|+
T Consensus 160 ~~~~~~~i 167 (353)
T PF10257_consen 160 DPALAQYI 167 (353)
T ss_pred CcHHHHHH
Confidence 45555666
No 372
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=55.31 E-value=62 Score=24.16 Aligned_cols=71 Identities=13% Similarity=0.058 Sum_probs=46.9
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhc-----CCCChHHHHHHHHHHHHH
Q 014945 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLS-----RDDFPQLQFEAAWALTNI 142 (415)
Q Consensus 72 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~-----~~~~~~i~~~a~~~L~~l 142 (415)
.+..+...|.+.++..+..|+..|..++...+.+...++....++..++.+.. ......++..+...+...
T Consensus 38 ~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 38 AVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 45667777888899999999999999877654444455656666666654311 111267777777766544
No 373
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=54.47 E-value=2.1e+02 Score=27.59 Aligned_cols=79 Identities=19% Similarity=0.275 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHH
Q 014945 85 RNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVR 164 (415)
Q Consensus 85 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ 164 (415)
...+..|+.+|..+++.-..+....+.+ +.|+.+|++.. ..-|..|+.++...+.........-.-....+.|..
T Consensus 101 ~r~Ri~aA~ALG~l~~~~~~~~~~~~~~----~~L~~~L~S~s-a~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~ 175 (441)
T PF12054_consen 101 IRARIAAAKALGLLLSYWPESSLQEIFQ----PLLLPYLNSPS-ATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLE 175 (441)
T ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHH----HHHHHHhcchh-HHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHH
Confidence 3467788899988876532333333322 37899999987 777888888998888753322211101123456666
Q ss_pred hhCC
Q 014945 165 LLSS 168 (415)
Q Consensus 165 ll~~ 168 (415)
.|..
T Consensus 176 ~L~~ 179 (441)
T PF12054_consen 176 ILEN 179 (441)
T ss_pred HHcC
Confidence 7764
No 374
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=53.80 E-value=1e+02 Score=29.89 Aligned_cols=83 Identities=20% Similarity=0.162 Sum_probs=53.4
Q ss_pred hhHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhcCCC-------------chhHHHHHhcCChHHHHHHhccchhH
Q 014945 149 NTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDS-------------PKCRDLVLSNGALMPLLAQFNEHAKL 214 (415)
Q Consensus 149 ~~~~~~~~g~i~~L~~ll~~-~~~~v~~~a~~~L~nl~~~~-------------~~~~~~~~~~g~i~~L~~~l~~~~~~ 214 (415)
..+.+.+.+.|+.|+.+|.. .+..++..|+.+|..|..-+ ...-..+.....+..|+..+-.....
T Consensus 54 ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~~ 133 (475)
T PF04499_consen 54 ILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQGG 133 (475)
T ss_pred HHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHhChHHHHHHHHHHhcCCCc
Confidence 34555668999999999974 56778888888887774211 22333444555677777766432335
Q ss_pred hHHHHHHHHHHHhhhCC
Q 014945 215 SMLRNATWTLSNFCRGK 231 (415)
Q Consensus 215 ~~~~~a~~~l~~l~~~~ 231 (415)
....+++.++-.|.+..
T Consensus 134 s~lvn~v~IlieLIRkn 150 (475)
T PF04499_consen 134 SSLVNGVSILIELIRKN 150 (475)
T ss_pred chHHHHHHHHHHHHHhc
Confidence 56667777776666543
No 375
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.63 E-value=46 Score=34.65 Aligned_cols=96 Identities=16% Similarity=0.087 Sum_probs=68.9
Q ss_pred hchHHHHHHhhcCCChhHHHHHHHHHHHhc----cCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCCh
Q 014945 240 RPALPALERLIHSNDDEVLTDACWALSYLS----DGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD 315 (415)
Q Consensus 240 ~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~----~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~ 315 (415)
..++....++|.+.+..++..++.++.... .+.+.... ++ ...-+.++..+...++-+...|+.++-+++....
T Consensus 802 ~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlP-lv-hq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sg 879 (1014)
T KOG4524|consen 802 LKILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLP-LV-HQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSG 879 (1014)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhH-HH-HhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhh
Confidence 455566677888999999999999887643 33333322 22 2356888999999999999999999999998776
Q ss_pred HHHHHHHHCCChHHHHHHhcCC
Q 014945 316 MQTQCIINHQALPCLLDLLTQN 337 (415)
Q Consensus 316 ~~~~~~~~~~~l~~L~~ll~~~ 337 (415)
+....=+-..++|.+-.++.+.
T Consensus 880 DFv~sR~l~dvlP~l~~~~~~~ 901 (1014)
T KOG4524|consen 880 DFVASRFLEDVLPWLKHLCQDS 901 (1014)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 6555444446777777666443
No 376
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.59 E-value=65 Score=31.04 Aligned_cols=96 Identities=10% Similarity=0.117 Sum_probs=69.0
Q ss_pred hcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHH-HHHHcCC
Q 014945 291 LLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQ-AIIEAGI 369 (415)
Q Consensus 291 lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~-~l~~~~~ 369 (415)
.|..++|.+-...|..|..--.+.. .++..|.+-+.+. .+.++..|..+|--++.++.+.+. .+.+.++
T Consensus 13 ~l~~pDWa~NleIcD~IN~~~~~~~---------eAvralkKRi~~k-~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~f 82 (470)
T KOG1087|consen 13 SLAEPDWALNLEICDLINSTEGGPK---------EAVRALKKRLNSK-NSKVQLLALTLLETCVKNCGYSFHLQVASKEF 82 (470)
T ss_pred cccCccHHHHHHHHHHHhcCccCcH---------HHHHHHHHHhccC-CcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4556777777777766644333322 3456788888888 888888888877777776666665 6668899
Q ss_pred HHHHHHHhccC--CHHHHHHHHHHHHHHh
Q 014945 370 IGPLVNLLLNA--EFEIKKEAAWAISNAT 396 (415)
Q Consensus 370 i~~L~~~l~~~--~~~v~~~a~~aL~nl~ 396 (415)
++.++.+.+.. +.+||..++..|..-.
T Consensus 83 L~emVk~~k~~~~~~~Vr~kiL~LI~~W~ 111 (470)
T KOG1087|consen 83 LNEMVKRPKNKPRDLKVREKILELIDTWQ 111 (470)
T ss_pred HHHHHhccccCCcchhHHHHHHHHHHHHH
Confidence 99999998865 6789998888876543
No 377
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=53.59 E-value=1.8e+02 Score=26.57 Aligned_cols=159 Identities=11% Similarity=0.012 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHH-hhCC--------CCHHHHHHHHHHHHHhcCCCchhHHHHHhcCC
Q 014945 130 QLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVR-LLSS--------PTDDVREQAVWALGNVAGDSPKCRDLVLSNGA 200 (415)
Q Consensus 130 ~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~-ll~~--------~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~ 200 (415)
.++.+.+..+.......++. .. +....+|.|+. .|.+ .++++.......+..+-..-.+.-..+.+ .+
T Consensus 42 ~iKkeIL~Li~t~i~~~~~~-~~-v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~-~v 118 (319)
T PF08767_consen 42 TIKKEILKLIETFISKAEDP-EE-VANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILE-AV 118 (319)
T ss_dssp HHHHHHHHHHHHHHHT-S-H-HH-HHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHH-HH
T ss_pred HHHHHHHHHHHHHHhccCCH-HH-HHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHH-HH
Confidence 45666666666666543322 22 23356666666 3322 34555555555555544322222233333 25
Q ss_pred hHHHHHHhccch--hHhHHHHHHHHHHHhhhCCC----CCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccC---
Q 014945 201 LMPLLAQFNEHA--KLSMLRNATWTLSNFCRGKP----QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDG--- 271 (415)
Q Consensus 201 i~~L~~~l~~~~--~~~~~~~a~~~l~~l~~~~~----~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~--- 271 (415)
+.+.+.++.++. -|+.+..-...+..+..... ..+......++..++..+++.+.+|...++.++..+...
T Consensus 119 f~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~ 198 (319)
T PF08767_consen 119 FECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSK 198 (319)
T ss_dssp HHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 667777775432 46777776666666665421 122334456778888889999999999999988887643
Q ss_pred -ChHHHHHHHHcCcHHHHHHh
Q 014945 272 -TNDKIQAVIEAGVCPRLVEL 291 (415)
Q Consensus 272 -~~~~~~~~~~~~~i~~L~~l 291 (415)
+++....+.+.-.++.+...
T Consensus 199 ~~~~~~~~F~~~y~~~il~~i 219 (319)
T PF08767_consen 199 TNPEFANQFYQQYYLDILQDI 219 (319)
T ss_dssp -SHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHH
Confidence 33444445554333333333
No 378
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=52.96 E-value=14 Score=22.03 Aligned_cols=25 Identities=8% Similarity=0.185 Sum_probs=20.2
Q ss_pred CCHHHHHHHhccCCHHHHHHHHHHH
Q 014945 368 GIIGPLVNLLLNAEFEIKKEAAWAI 392 (415)
Q Consensus 368 ~~i~~L~~~l~~~~~~v~~~a~~aL 392 (415)
.+...+...+.++++.||+.|..+|
T Consensus 18 ~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 18 DVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHC
Confidence 4667778888999999999988753
No 379
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=52.82 E-value=3.7e+02 Score=29.97 Aligned_cols=255 Identities=12% Similarity=0.147 Sum_probs=129.9
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHH----HHhhcCCCChHHHHHHHHHHHHHhCCCc
Q 014945 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRF----IEFLSRDDFPQLQFEAAWALTNIASGTS 147 (415)
Q Consensus 72 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L----~~ll~~~~~~~i~~~a~~~L~~l~~~~~ 147 (415)
.+..+++.|...|+..+..|+..+..+....+ .+.. .|++|.+ .++..+.+ ..+|..+-.++..+...-.
T Consensus 42 el~~I~kkL~KkD~~TK~KaL~eL~eli~~~~---~e~~--~~il~~w~~i~~kl~~d~~-~~VR~~t~~v~s~l~t~lk 115 (1312)
T KOG0803|consen 42 ELDIIVKKLLKRDETTKIKALQELSELIDTSD---TEEL--KGILPEWLVIYAKLIIDED-RTVRLLTHDVFSKLLTKLK 115 (1312)
T ss_pred HHHHHHHHHhccChHHHHHHHHhHHHhccccc---chHH--hhhHHHHHHHHHHHhcCcc-HHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999975432 2221 2234333 35566666 8999999999988876422
Q ss_pred hhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcC--ChHHHHHHhc----------------
Q 014945 148 ENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNG--ALMPLLAQFN---------------- 209 (415)
Q Consensus 148 ~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g--~i~~L~~~l~---------------- 209 (415)
.......+ ..++...-.-.+.+..+...|-..+........ .+......+ ......+.+.
T Consensus 116 k~lsp~LK-~li~~wl~~~~d~~~~vs~aa~~sf~~~f~~ek-~~~v~~~c~~~i~~~~~~~~~~~~~~slSd~~~~s~E 193 (1312)
T KOG0803|consen 116 KKLSPFLK-SLIPPWLGGQFDLDYPVSEAAKASFKDGFAEEK-DRHVWFKCDPEIFYLVTEILVKETPDSLSDLRTLSSE 193 (1312)
T ss_pred HHhhHHHH-hhhhhhhheecccchHHHHHHHHHHHhhcChhh-hHHHHHHhhHHHHHHHHHHHhccCccccchhhhcchH
Confidence 22122222 233333333334455566666666555543221 122222111 1222222210
Q ss_pred --cchhHhHHHHHHHHHHHhhhCC-CCCchh----hhhc--hHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHH
Q 014945 210 --EHAKLSMLRNATWTLSNFCRGK-PQPLFE----QTRP--ALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVI 280 (415)
Q Consensus 210 --~~~~~~~~~~a~~~l~~l~~~~-~~~~~~----~~~~--~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~ 280 (415)
......+...++-++..+.... +..... .... .-..+..++.+..+.+..+...++..+++.-....-.-.
T Consensus 194 e~E~k~~Rvi~ssLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~~i~~~~~~~~ 273 (1312)
T KOG0803|consen 194 ELESKYQRVISSSLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLIDDILNRVMESE 273 (1312)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHhhhHHhcchhh
Confidence 0112234445555555554221 111111 1112 234577788888999999998888888865543311111
Q ss_pred HcCcHHHHHHhcCCCChhhHHHHHHHHHHhhc-CChHHHHH--HHHCCChHHHHHHhc
Q 014945 281 EAGVCPRLVELLRHPSPSVLIPALRTVGNIVT-GDDMQTQC--IINHQALPCLLDLLT 335 (415)
Q Consensus 281 ~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~-~~~~~~~~--~~~~~~l~~L~~ll~ 335 (415)
..-+-+.+.....+.+ .+.......+..... -.+..... ....|++|.+..++.
T Consensus 274 ~~~l~~~~~~~~~~~d-~~c~~~we~Vl~~~~~~p~~~~~~~~~~~k~il~~l~~~ir 330 (1312)
T KOG0803|consen 274 KNYLKPVLLGSIDSLD-HVCSSMWEKVLLNLSSLPDEWLHLNSLLKKGILPLLSNLIR 330 (1312)
T ss_pred hhHhhHHHHccccccc-cccHHHHHHHHHHhhhhhHHHhcccchhccchhHHHHHHHh
Confidence 1122333333344444 333333334442222 22222221 245578888888887
No 380
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=52.47 E-value=2.4e+02 Score=27.70 Aligned_cols=140 Identities=14% Similarity=0.106 Sum_probs=84.9
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhcc-------chhHhHHHHHHHHHHHhhhCCCC
Q 014945 161 IFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE-------HAKLSMLRNATWTLSNFCRGKPQ 233 (415)
Q Consensus 161 ~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~-------~~~~~~~~~a~~~l~~l~~~~~~ 233 (415)
.+++.+.+.++..+..|+..|.. |+ .... .++.++.++.. ..|.....+++..+..|..++.-
T Consensus 211 ~It~a~~g~~~~~r~eAL~sL~T---Ds-GL~~------LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i 280 (576)
T KOG2549|consen 211 EITEACTGSDEPLRQEALQSLET---DS-GLQQ------LLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNI 280 (576)
T ss_pred HHHHHHhcCCHHHHHHHHHhhcc---Cc-cHHH------HHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCcc
Confidence 34444445667777777666642 22 1211 35666666632 24667778888888888877554
Q ss_pred CchhhhhchHHHHHHhhcC----------CChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCC--ChhhHH
Q 014945 234 PLFEQTRPALPALERLIHS----------NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP--SPSVLI 301 (415)
Q Consensus 234 ~~~~~~~~~l~~l~~lL~~----------~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~--~~~v~~ 301 (415)
.-...+..++|.++.++-+ +...+|.-|+..+..++......... +...++..+...+.++ .....-
T Consensus 281 ~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~-L~~Rit~tl~k~l~D~~~~~st~Y 359 (576)
T KOG2549|consen 281 FLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNN-LQPRITRTLSKALLDNKKPLSTHY 359 (576)
T ss_pred chhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHHhcCCCCCchhhh
Confidence 5555667888888777632 22457888888888888766555443 4455667777776554 233444
Q ss_pred HHHHHHHHhh
Q 014945 302 PALRTVGNIV 311 (415)
Q Consensus 302 ~a~~~l~nl~ 311 (415)
-++..|..+.
T Consensus 360 Gai~gL~~lg 369 (576)
T KOG2549|consen 360 GAIAGLSELG 369 (576)
T ss_pred hHHHHHHHhh
Confidence 4555554443
No 381
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=51.99 E-value=94 Score=28.50 Aligned_cols=75 Identities=23% Similarity=0.273 Sum_probs=47.9
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHcC--cHHHHHHhcCCCC---hhhHHHHHHHHHHhhcCChHHHHHH------HHCCC
Q 014945 258 LTDACWALSYLSDGTNDKIQAVIEAG--VCPRLVELLRHPS---PSVLIPALRTVGNIVTGDDMQTQCI------INHQA 326 (415)
Q Consensus 258 ~~~a~~~l~~l~~~~~~~~~~~~~~~--~i~~L~~lL~~~~---~~v~~~a~~~l~nl~~~~~~~~~~~------~~~~~ 326 (415)
+-.|+..+.++.. .+.....++..+ ++..|++++..++ ..++..|+++|..++.........+ +.+|+
T Consensus 239 RllAi~~l~~~~~-~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~aLg~~v~HGi 317 (329)
T PF06012_consen 239 RLLAIANLVYIHP-ESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLRALGANVSHGI 317 (329)
T ss_pred HHHHHHHHHhhCC-CHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHHHhcCCCCccc
Confidence 3334444444433 334445576666 9999999997653 5789999999999998655333322 14577
Q ss_pred hHHHHHH
Q 014945 327 LPCLLDL 333 (415)
Q Consensus 327 l~~L~~l 333 (415)
++.+++-
T Consensus 318 L~~llR~ 324 (329)
T PF06012_consen 318 LPQLLRK 324 (329)
T ss_pred HHHHHHH
Confidence 7766653
No 382
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=51.27 E-value=50 Score=27.38 Aligned_cols=75 Identities=15% Similarity=0.203 Sum_probs=53.6
Q ss_pred HHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHH
Q 014945 286 PRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAII 365 (415)
Q Consensus 286 ~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~ 365 (415)
+.+.....+++.-++..++.++........ ... .+++.+-.++.++ +..|++..+|+|..++...++....++
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~~~-~~~-----~~l~~~~~~~~d~-~~~Vqkav~w~L~~~~~~~~~~v~~~l 180 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKKET-DFD-----LLLEIIERLLHDE-EYFVQKAVGWALREYGKKDPERVIAFL 180 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHhcc-cHH-----HHHHHHHHhCCCH-HHHHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 677788888888888888877766655411 122 2344555566666 889999999999999998787766655
Q ss_pred Hc
Q 014945 366 EA 367 (415)
Q Consensus 366 ~~ 367 (415)
+.
T Consensus 181 ~~ 182 (197)
T cd06561 181 EK 182 (197)
T ss_pred HH
Confidence 43
No 383
>KOG1791 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.04 E-value=1.4e+02 Score=33.11 Aligned_cols=198 Identities=15% Similarity=0.108 Sum_probs=112.0
Q ss_pred chhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhc---cchhHhHHHHHHHH
Q 014945 147 SENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN---EHAKLSMLRNATWT 223 (415)
Q Consensus 147 ~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~---~~~~~~~~~~a~~~ 223 (415)
.+.+..+++.|.+..+..-+++.++.++..|.|++.-+-.+-...-....+.-.+..++...+ +++++.+.......
T Consensus 1429 v~~r~~fvs~~lLa~~F~~lSS~D~~mr~la~~~lqi~~dHLe~l~ek~~a~~~ll~L~~l~qng~~e~~~Rl~si~alF 1508 (1758)
T KOG1791|consen 1429 VEIRLIFVSRGLLALLFKGLSSDDPSMRKLAYWVLQIFLDHLENLLEKKQAQFNLLYLSCLAQNGSRESDPRLISICALF 1508 (1758)
T ss_pred hhcchhhhhcccHHHHhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcCCCcchhhHHHHH
Confidence 344447788899999999999999999999988887664333221112222223344444442 12233333222222
Q ss_pred ---HHHhhhCCCCCchh-----------hhhchHHHHHHhhcCCChh---HHHHHHHHHHHhccCChHHHHHHHHcCcHH
Q 014945 224 ---LSNFCRGKPQPLFE-----------QTRPALPALERLIHSNDDE---VLTDACWALSYLSDGTNDKIQAVIEAGVCP 286 (415)
Q Consensus 224 ---l~~l~~~~~~~~~~-----------~~~~~l~~l~~lL~~~d~~---v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~ 286 (415)
.+.++..+...... ..-..+|.+-.++.+..++ .+.-....+......+++ .+.....+...
T Consensus 1509 ~A~~~~ill~Ps~~ly~~In~~L~~s~~vdlq~iP~F~~ffySs~~e~~t~R~Wvl~LV~~glks~~D-~ql~~~~~~~~ 1587 (1758)
T KOG1791|consen 1509 IAFFSDILLVPSEGLYFPINGLLLSSKIVDLQGIPIFHRFFYSSVFEHHTEREWVLELVSKGLKSCPD-YQLLQIRNIFE 1587 (1758)
T ss_pred HHHHHHHHcCCccccchhHHHHHHhhhhcccCCCccHHHHHHhccccccchhhhhHHHHHHHhcCchh-hhHHhhcCcce
Confidence 22333332111111 1123456666666655443 333333344443334443 46667778888
Q ss_pred HHHHhcCCC--ChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCC-ccchHHH
Q 014945 287 RLVELLRHP--SPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNY-KKSIKKE 345 (415)
Q Consensus 287 ~L~~lL~~~--~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~-~~~v~~~ 345 (415)
.++++.+++ +..-+.-.+.++++-+..+......+-..|+...+..++.+++ .+..++.
T Consensus 1588 ~~lsf~sS~l~~~~S~~LIL~~L~~~Vk~p~~a~~mle~~Gl~sWi~niI~s~~~k~~~~~~ 1649 (1758)
T KOG1791|consen 1588 TLLSFYSSPLASEESKRLILATLQKGVKFPFYAYEMLEVPGLFSWILNIIPSSFLKPVLLKA 1649 (1758)
T ss_pred EeehhhcchhHHHHHHHHHHHHHHhcCCCcHHHHHHHhcccHHHHHHHhccccccchHHHhh
Confidence 888888765 3344456777888877766666666666799999999998874 3344444
No 384
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=49.43 E-value=1.4e+02 Score=33.62 Aligned_cols=149 Identities=13% Similarity=0.121 Sum_probs=80.1
Q ss_pred CchHHHHH----hhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCc
Q 014945 114 GVVPRFIE----FLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP 189 (415)
Q Consensus 114 g~i~~L~~----ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~ 189 (415)
+.++.++. ++.+.+ +.++..+......+...... .....++..|+..+.+++..-...|+.+|..|+...+
T Consensus 431 ~~f~siL~la~~Ll~S~e-~~v~~FG~~~Y~~lF~~fds----~~qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~~~ 505 (1426)
T PF14631_consen 431 DYFPSILSLAQSLLRSKE-PSVREFGSHLYKYLFKEFDS----YCQQEVVGALVTHIGSGNSQEVDAALDVLCELAEKNP 505 (1426)
T ss_dssp TSHHHHHHHHHHHHTSSS-HHHHHHHHHHHHHHHHSS-H----HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHHhhccc----hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhccH
Confidence 45555554 455666 88888877777766654322 2233467788888866666556799999999997654
Q ss_pred hhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHH----HHHHHHH
Q 014945 190 KCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVL----TDACWAL 265 (415)
Q Consensus 190 ~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~----~~a~~~l 265 (415)
.. ...-...+..+++.+ .+-+..-.+.+...++.++.............+.-.+-+.|.+.+.... ..++..+
T Consensus 506 ~~--l~~fa~~l~giLD~l-~~Ls~~qiR~lf~il~~La~~~~~~~s~i~del~ivIRKQLss~~~~~K~~GIIGav~~i 582 (1426)
T PF14631_consen 506 SE--LQPFATFLKGILDYL-DNLSLQQIRKLFDILCTLAFSDSSSSSSIQDELHIVIRKQLSSSNPKYKRIGIIGAVMMI 582 (1426)
T ss_dssp HH--HHHTHHHHHGGGGGG-GG--HHHHHHHHHHHHHHHHHHSS---HHHHHHHHHHHHHHT-SSHHHHHHHHHHHHHHH
T ss_pred HH--HHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHhhcCCcHHHHHHhHHHHHHHH
Confidence 32 221122344455555 3444555667777888877654221111112222334466777765543 2344445
Q ss_pred HHhcc
Q 014945 266 SYLSD 270 (415)
Q Consensus 266 ~~l~~ 270 (415)
..++.
T Consensus 583 ~~la~ 587 (1426)
T PF14631_consen 583 KHLAA 587 (1426)
T ss_dssp HHTT-
T ss_pred HHHHH
Confidence 55543
No 385
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=49.17 E-value=78 Score=33.64 Aligned_cols=136 Identities=7% Similarity=0.059 Sum_probs=89.5
Q ss_pred cCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChH-HHHHHHHCCChHH
Q 014945 251 HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM-QTQCIINHQALPC 329 (415)
Q Consensus 251 ~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~-~~~~~~~~~~l~~ 329 (415)
++-+++||..++..|+.-+...++ .+++...+..+--.|++.+..||..++.+|-.+...... ..-..+-..+-..
T Consensus 297 RDV~~~IRaiCiqeLgiWi~~yP~---~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~R 373 (1048)
T KOG2011|consen 297 RDVDPDIRAICIQELGIWIKSYPE---IFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDR 373 (1048)
T ss_pred ccCchHHHHHHHHHHHHHHHhccH---HHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 445799999988888887766553 477777888888899999999999999999999876331 1112223355667
Q ss_pred HHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHH
Q 014945 330 LLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNA 395 (415)
Q Consensus 330 L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl 395 (415)
++.+.....+..|+......+.-.... .++...=+..+..++-+.+++++..|...|..=
T Consensus 374 IVeMadrd~~~~Vrav~L~~~~~~~~~------g~L~d~di~~Vy~Li~d~~r~~~~aa~~fl~~k 433 (1048)
T KOG2011|consen 374 IVEMADRDRNVSVRAVGLVLCLLLSSS------GLLSDKDILIVYSLIYDSNRRVAVAAGEFLYKK 433 (1048)
T ss_pred HHHHHhhhcchhHHHHHHHHHHHHhcc------cccChhHHHHHHHHHhccCcchHHHHHHHHHHH
Confidence 888772222556665554443333221 112222355667777788888888887776643
No 386
>PF13925 Katanin_con80: con80 domain of Katanin
Probab=48.97 E-value=1.3e+02 Score=24.36 Aligned_cols=76 Identities=13% Similarity=0.074 Sum_probs=51.3
Q ss_pred hcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCCh
Q 014945 197 SNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTN 273 (415)
Q Consensus 197 ~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~ 273 (415)
..|.+...+..+...+|..+...++.++.+.... ..-....-..++|.+..+|.+..+.-...++..+..+.....
T Consensus 26 ~~~~~k~ai~~~~~~~D~svlvD~L~vl~~~~~~-~~~tLd~c~~lLP~i~~LL~Sk~E~~i~~aL~~L~~i~~~f~ 101 (164)
T PF13925_consen 26 RRNDIKGAIEYAVRMNDPSVLVDVLSVLNQSLKP-EKWTLDLCVDLLPLIEELLQSKYESYISVALEMLRSILKKFG 101 (164)
T ss_pred hcCcHHHHHHHHHhcCCchHHHHHHHHHHHhcCc-CcccHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHH
Confidence 4455555566555556777777777776644433 223344446789999999999988888888888877765433
No 387
>PF03752 ALF: Short repeats of unknown function; InterPro: IPR005506 This set of repeats is found in a small family of secreted proteins of no known function, which may be involved in signal transduction.
Probab=48.64 E-value=51 Score=19.68 Aligned_cols=35 Identities=20% Similarity=0.292 Sum_probs=27.4
Q ss_pred HHHHhccCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhCC
Q 014945 373 LVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKYKFFYVSRT 414 (415)
Q Consensus 373 L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~~g 414 (415)
+..++.++-+.|+..|-.+| ..++++.+..| +..|
T Consensus 4 v~~l~~~gG~~vr~AA~~AL----~~G~~~~l~~F---L~~G 38 (43)
T PF03752_consen 4 VVQLLASGGPAVRAAAQAAL----DAGTPEALREF---LETG 38 (43)
T ss_pred HHHHHHcCCHHHHHHHHHHH----HhCCHHHHHHH---HHHh
Confidence 45677778899999998888 45688888888 7665
No 388
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=48.28 E-value=1.3e+02 Score=23.54 Aligned_cols=98 Identities=10% Similarity=0.032 Sum_probs=64.6
Q ss_pred cCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCC-HHHHHHHHHcCCH
Q 014945 292 LRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN-VNQIQAIIEAGII 370 (415)
Q Consensus 292 L~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~-~~~~~~l~~~~~i 370 (415)
+..+++......|..+.. -.. ... .++..|.+-|.++.++.+...|...|-.++.++ ......+...+++
T Consensus 14 l~~~dw~~ileicD~In~-~~~---~~k-----~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl 84 (141)
T cd03565 14 LQSEDWGLNMEICDIINE-TED---GPK-----DAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFI 84 (141)
T ss_pred CCCcCHHHHHHHHHHHhC-CCC---cHH-----HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhh
Confidence 345677777777777743 111 111 235566666664337888888887777777643 3444566677889
Q ss_pred HH-HHHHhcc---CCHHHHHHHHHHHHHHhCC
Q 014945 371 GP-LVNLLLN---AEFEIKKEAAWAISNATSG 398 (415)
Q Consensus 371 ~~-L~~~l~~---~~~~v~~~a~~aL~nl~~~ 398 (415)
.. |++++.. .+..|+..++..+...+..
T Consensus 85 ~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~ 116 (141)
T cd03565 85 KDVLVKLINPKNNPPTIVQEKVLALIQAWADA 116 (141)
T ss_pred hHHHHHHHcccCCCcHHHHHHHHHHHHHHHHH
Confidence 87 8999863 3458999998888887743
No 389
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=47.85 E-value=68 Score=26.57 Aligned_cols=71 Identities=13% Similarity=0.273 Sum_probs=49.9
Q ss_pred HHHHHHhcCCCccchHHHHHHHHHHHhcC--CHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCHHHHH
Q 014945 328 PCLLDLLTQNYKKSIKKEACWTISNITAG--NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIK 405 (415)
Q Consensus 328 ~~L~~ll~~~~~~~v~~~a~~~l~nl~~~--~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~ 405 (415)
+.+...+.++ +.-++..+..++...... ..+. +++.+-.++.++++.|++...|+|..++...+..-+.
T Consensus 108 ~~~~~w~~s~-~~~~rR~~~~~~~~~~~~~~~~~~--------~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~~~v~~ 178 (197)
T cd06561 108 DLLEEWAKSE-NEWVRRAAIVLLLRLIKKETDFDL--------LLEIIERLLHDEEYFVQKAVGWALREYGKKDPERVIA 178 (197)
T ss_pred HHHHHHHhCC-cHHHHHHHHHHHHHHHHhcccHHH--------HHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCHHHHHH
Confidence 6788888888 888888887777665543 2221 3444445556678899999999999999885544445
Q ss_pred HH
Q 014945 406 YK 407 (415)
Q Consensus 406 ~l 407 (415)
++
T Consensus 179 ~l 180 (197)
T cd06561 179 FL 180 (197)
T ss_pred HH
Confidence 54
No 390
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=46.12 E-value=2.8e+02 Score=26.70 Aligned_cols=76 Identities=16% Similarity=0.131 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHhcCCCch-hHHHHHhcCChH-HHHHHhccchhHhHHHHHHHHHHHhhhCCCCC-chhhhhchHHHHHH
Q 014945 172 DVREQAVWALGNVAGDSPK-CRDLVLSNGALM-PLLAQFNEHAKLSMLRNATWTLSNFCRGKPQP-LFEQTRPALPALER 248 (415)
Q Consensus 172 ~v~~~a~~~L~nl~~~~~~-~~~~~~~~g~i~-~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~-~~~~~~~~l~~l~~ 248 (415)
..|..|+.+||.++..-+. .... ... .|+..| .+..-.-+..++.++...+...... .......+.+.|..
T Consensus 102 r~Ri~aA~ALG~l~~~~~~~~~~~-----~~~~~L~~~L-~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~ 175 (441)
T PF12054_consen 102 RARIAAAKALGLLLSYWPESSLQE-----IFQPLLLPYL-NSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLE 175 (441)
T ss_pred HHHHHHHHHHHHHHHhcccchHHH-----HHHHHHHHHh-cchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHH
Confidence 4577888899988754321 1111 223 467777 5555555666666666666554111 11113445556666
Q ss_pred hhcCC
Q 014945 249 LIHSN 253 (415)
Q Consensus 249 lL~~~ 253 (415)
.|..+
T Consensus 176 ~L~~~ 180 (441)
T PF12054_consen 176 ILENP 180 (441)
T ss_pred HHcCC
Confidence 66633
No 391
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=46.08 E-value=2.6e+02 Score=26.24 Aligned_cols=131 Identities=15% Similarity=0.172 Sum_probs=70.8
Q ss_pred CHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHh
Q 014945 170 TDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERL 249 (415)
Q Consensus 170 ~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~l 249 (415)
...-.+.|...+.++...-|...+. ++..-++++ .+.+..+++.|+.-|-.+|.++ ....+.+.|+++
T Consensus 37 ~~k~k~lasq~ip~~fk~fp~la~~-----a~da~~d~~-ed~d~~ir~qaik~lp~fc~~d------~~~rv~d~l~qL 104 (460)
T KOG2213|consen 37 TSKEKRLASQFIPRFFKHFPSLADE-----AIDAQLDLC-EDDDVGIRRQAIKGLPLFCKGD------ALSRVNDVLVQL 104 (460)
T ss_pred chHHHHHHHHHHHHHHhhCchhhhH-----HHHhhhccc-cccchhhHHHHHhccchhccCc------hhhhhHHHHHHH
Confidence 3444556666777766665544333 344555666 6677778888888777777763 122233333333
Q ss_pred hc------------CCChhHHHHHHHHHHH-hccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhc
Q 014945 250 IH------------SNDDEVLTDACWALSY-LSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT 312 (415)
Q Consensus 250 L~------------~~d~~v~~~a~~~l~~-l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~ 312 (415)
|. ..|..+++.++..|.. +..-.++....-++..+++.+...|.+-...-....+..|+++..
T Consensus 105 Lnk~sl~~Lf~~~~~~D~~irek~l~fi~tKl~~l~~e~L~kevE~~iv~eikkal~dVtgeef~lfm~~L~~lk~ 180 (460)
T KOG2213|consen 105 LNKASLTGLFGQIEVGDEQIREKVLKFIRTKLITLKGEVLTKEVERHIVDEIKKALEDVTGEEFTLFMDILASLKS 180 (460)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhcccHHHhhhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhc
Confidence 32 2356666666554443 223333333333444555666666655554445555666666654
No 392
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=45.98 E-value=1.9e+02 Score=27.06 Aligned_cols=95 Identities=15% Similarity=0.163 Sum_probs=67.2
Q ss_pred CCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCCh-HHHHHHHHCCChHHH
Q 014945 252 SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD-MQTQCIINHQALPCL 330 (415)
Q Consensus 252 ~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~-~~~~~~~~~~~l~~L 330 (415)
.++..+..++|--+.+=..+. ..++..|..-|.+.++.|...|+..++.++..+. ..+..+-...+...|
T Consensus 23 ~enW~~IlDvCD~v~~~~~~~---------kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el 93 (462)
T KOG2199|consen 23 SENWSLILDVCDKVGSDPDGG---------KDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTEL 93 (462)
T ss_pred cccHHHHHHHHHhhcCCCccc---------HHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHH
Confidence 345556666555554432221 1357888899999999999999999999987655 345556666888899
Q ss_pred HHHhcCCCccchHHHHHHHHHHHhc
Q 014945 331 LDLLTQNYKKSIKKEACWTISNITA 355 (415)
Q Consensus 331 ~~ll~~~~~~~v~~~a~~~l~nl~~ 355 (415)
..++.+...+.|++....++-+.+.
T Consensus 94 ~al~~~~~h~kV~~k~~~lv~eWse 118 (462)
T KOG2199|consen 94 RALIESKAHPKVCEKMRDLVKEWSE 118 (462)
T ss_pred HHHHhhcccHHHHHHHHHHHHHHHH
Confidence 9999844378888877777776664
No 393
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=45.65 E-value=45 Score=25.07 Aligned_cols=37 Identities=24% Similarity=0.208 Sum_probs=29.2
Q ss_pred CHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCHHHHHHH
Q 014945 369 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKYK 407 (415)
Q Consensus 369 ~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l 407 (415)
+++.|+.-|.+++++|...|..+|...+... ..++++
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~--~~le~~ 45 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDK--EYLEYL 45 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhch--hhHHHH
Confidence 4778888898899999999999999988764 444444
No 394
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=44.25 E-value=1e+02 Score=28.22 Aligned_cols=66 Identities=24% Similarity=0.387 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHhCCCchhhHHHHhCC--ChHHHHHhhCCC---CHHHHHHHHHHHHHhcCCCchhHHHHH
Q 014945 130 QLQFEAAWALTNIASGTSENTRVVIDHG--AVPIFVRLLSSP---TDDVREQAVWALGNVAGDSPKCRDLVL 196 (415)
Q Consensus 130 ~i~~~a~~~L~~l~~~~~~~~~~~~~~g--~i~~L~~ll~~~---~~~v~~~a~~~L~nl~~~~~~~~~~~~ 196 (415)
.+|..|+.++..+... +.....++..+ ++.-|++++.-+ ...++..|+.+|.-|+.+...+.+.+-
T Consensus 237 ~iRllAi~~l~~~~~~-~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~ 307 (329)
T PF06012_consen 237 QIRLLAIANLVYIHPE-SQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLR 307 (329)
T ss_pred HHHHHHHHHHHhhCCC-HHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 4556666666555543 56667777766 899999998763 467899999999999987776655443
No 395
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=43.66 E-value=2.5e+02 Score=25.46 Aligned_cols=186 Identities=10% Similarity=0.007 Sum_probs=109.6
Q ss_pred HHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhh-hhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHH
Q 014945 202 MPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQ-TRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVI 280 (415)
Q Consensus 202 ~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~-~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~ 280 (415)
..|.++|...-...+...|+.+...+...-....... ..-..|.|.+++......|+-..+..+-...-.-+.... ..
T Consensus 57 krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~~L~-p~ 135 (307)
T PF04118_consen 57 KRLAQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGPALR-PC 135 (307)
T ss_pred HHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccHHHH-HH
Confidence 4566666444455677777777777665532222221 123356777777777777887777777654432222222 22
Q ss_pred HcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHH-HHhc-C--
Q 014945 281 EAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTIS-NITA-G-- 356 (415)
Q Consensus 281 ~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~-nl~~-~-- 356 (415)
-.|++..++..|.+++.++...+...+-.+...-... -+...+...+-+ ++.+|..|...+. .+.. .
T Consensus 136 l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~~-------~F~~~lwl~ii~--sp~~Rl~al~~l~~~l~~~~~~ 206 (307)
T PF04118_consen 136 LKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGDK-------YFWQCLWLCIIT--SPSRRLGALNYLLRRLPKFQND 206 (307)
T ss_pred HHHHHHHhccccccCCchHHHHHHHHHHHHHHhcChh-------HHHHHHHHHHhc--CcchhHHHHHHHHHhCCccccc
Confidence 2467777777788777788888888887776542211 223344444432 4566766664433 3333 1
Q ss_pred ----CHHHHHHHHH--cC-CHHHHHHHhccCCHHHHHHHHHHHHHHhC
Q 014945 357 ----NVNQIQAIIE--AG-IIGPLVNLLLNAEFEIKKEAAWAISNATS 397 (415)
Q Consensus 357 ----~~~~~~~l~~--~~-~i~~L~~~l~~~~~~v~~~a~~aL~nl~~ 397 (415)
..+....++. .| ++..+...+.+++.-|++.++..|.+-.-
T Consensus 207 ~~~~~~~~~~~~~~~~~~Llv~al~~~L~D~~iLVqR~~LDlLl~~~P 254 (307)
T PF04118_consen 207 ELSLSSEEQEYCLGPDPGLLVRALCACLEDENILVQRGFLDLLLSHFP 254 (307)
T ss_pred ccccchHHHHHhcCCCccHHHHHHHHHhCCchHHHHHHHHHHHHHhCC
Confidence 2333334442 23 36788888888888888888888877664
No 396
>KOG2073 consensus SAP family cell cycle dependent phosphatase-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=43.49 E-value=4.2e+02 Score=27.92 Aligned_cols=199 Identities=17% Similarity=0.170 Sum_probs=99.6
Q ss_pred hHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCC---CCCc----hhhhhchHHHHHHh-hcCC-ChhHHHHH
Q 014945 191 CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK---PQPL----FEQTRPALPALERL-IHSN-DDEVLTDA 261 (415)
Q Consensus 191 ~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~---~~~~----~~~~~~~l~~l~~l-L~~~-d~~v~~~a 261 (415)
..+.+.....++.++.++....++.++.++..+|+.+.+.. +.+. .......+..|+.. |..+ ........
T Consensus 182 Viq~l~d~~li~kll~ll~ps~~~~~qsna~~~L~~iv~~s~~~~gPn~L~~qL~s~e~ieqLl~~ml~~~~s~s~lVs~ 261 (838)
T KOG2073|consen 182 VIQWLNDQELIPKLLELLNPSKDPDVQSNAGQTLCAIVRLSRNQPGPNPLTKQLESPETIEQLLKIMLEDGTSLSVLVSG 261 (838)
T ss_pred HHHHHhhHHHHHHHHHHhCCccccchhHHHHHHHHHHHhcccccCCCCHHHHhhcCHHHHHHHHHHHccCCcchhhHHHH
Confidence 34556667789999999977778889999999988888763 1111 11224455554433 3322 23333333
Q ss_pred HHHHHHhccCChHHHHHHHHcC-cHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHC---CChHHHHHHhcCC
Q 014945 262 CWALSYLSDGTNDKIQAVIEAG-VCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINH---QALPCLLDLLTQN 337 (415)
Q Consensus 262 ~~~l~~l~~~~~~~~~~~~~~~-~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~---~~l~~L~~ll~~~ 337 (415)
+..+..+....-. .+... ....+.+-....++.+....+.++..-. ....+.+.+. +.++.=...+..+
T Consensus 262 i~vlI~ll~~~r~----~~~~~~~~~i~~q~~~~~d~~~~~~~l~~~~p~L---~dF~~lL~~~~~~~~l~tt~g~l~pP 334 (838)
T KOG2073|consen 262 IIVLISLLNPRRD----TVETNSTTTILSQPPSERDPIVLNELLGAMEPRL---GDFVQLLLEPEKLDLLETTYGELEPP 334 (838)
T ss_pred HHHHHHhcCcccc----cccccceeeeecCCccccCccchHHHHHHHHHHH---HHHHHHhcCCccchhhhhhhhccCCC
Confidence 3333333211110 01000 0011111112223444444444443222 1122222222 1233333333333
Q ss_pred CccchHHHHHHHHHHHhc-CCHHHHHHHHHcCCHHHHHHHhccCCHH--HHHHHHHHHHHHhC
Q 014945 338 YKKSIKKEACWTISNITA-GNVNQIQAIIEAGIIGPLVNLLLNAEFE--IKKEAAWAISNATS 397 (415)
Q Consensus 338 ~~~~v~~~a~~~l~nl~~-~~~~~~~~l~~~~~i~~L~~~l~~~~~~--v~~~a~~aL~nl~~ 397 (415)
-...|-..|..+.-+.. ++....+.+...+++..+++++...... +...+-.++.....
T Consensus 335 -LG~~Rlki~eliaelL~~~~~~l~~el~~~~~~~r~lD~f~~y~~nN~lh~~~e~~I~~~~~ 396 (838)
T KOG2073|consen 335 -LGFERLKIVELIAELLHCSNMTLLNELRAEGIAERLLDLFFEYPWNNFLHAQVESCIVENLS 396 (838)
T ss_pred -cchHHHHHHHHHHHHhccCcHHHHhHHhhhhhHHHHHHHHHhcchhHHHHHHHHHHHHHhhh
Confidence 44567777877777765 6777778888888887887777653322 44444444444433
No 397
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.77 E-value=54 Score=31.53 Aligned_cols=70 Identities=11% Similarity=0.067 Sum_probs=54.1
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchh-HHHhcCchHHHHHhhcCC-CChHHHHHHHHHHHH
Q 014945 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPIN-EVIQSGVVPRFIEFLSRD-DFPQLQFEAAWALTN 141 (415)
Q Consensus 71 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~-~~~~~g~i~~L~~ll~~~-~~~~i~~~a~~~L~~ 141 (415)
+++..|.+.+++.++.+++.|+..|..++..- ..... .+.+.++++.++.+.+.. -+..+|..++..|-.
T Consensus 38 eAvralkKRi~~k~s~vq~lALtlLE~cvkNC-G~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~ 109 (470)
T KOG1087|consen 38 EAVRALKKRLNSKNSKVQLLALTLLETCVKNC-GYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDT 109 (470)
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHH
Confidence 46677888888888899999999888776543 34444 677899999999999876 447888888877743
No 398
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=41.99 E-value=3.1e+02 Score=25.93 Aligned_cols=71 Identities=17% Similarity=0.201 Sum_probs=39.7
Q ss_pred hhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHc---CcHHHHHHhcC-----CCChhhHHHHHHHHHHh
Q 014945 239 TRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA---GVCPRLVELLR-----HPSPSVLIPALRTVGNI 310 (415)
Q Consensus 239 ~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~---~~i~~L~~lL~-----~~~~~v~~~a~~~l~nl 310 (415)
..++...+..++.++.-.|.+.|+....| +.+..++.. -++|.+..-|. +-+..+...++.++.-+
T Consensus 339 ~~PLf~qia~c~sS~HFQVAEraL~~wnN------e~i~~Li~~n~~~ilPiiFpaLyr~sk~hWN~~i~~l~~nvlk~f 412 (457)
T KOG2085|consen 339 MVPLFRQIARCVSSPHFQVAERALYLWNN------EYIRSLISQNAEVILPIVFPALYRNSKSHWNQAIHNLILNVLKTF 412 (457)
T ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHhh------HHHHHHHHhccceeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666677788888888888877665433 222333332 24455555442 22345555666666666
Q ss_pred hcCCh
Q 014945 311 VTGDD 315 (415)
Q Consensus 311 ~~~~~ 315 (415)
..-++
T Consensus 413 ~emd~ 417 (457)
T KOG2085|consen 413 MEMDP 417 (457)
T ss_pred HHhCH
Confidence 55444
No 399
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=41.92 E-value=58 Score=24.50 Aligned_cols=39 Identities=13% Similarity=0.130 Sum_probs=32.2
Q ss_pred chHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHh
Q 014945 115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVID 155 (415)
Q Consensus 115 ~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~ 155 (415)
+++.|+.-|.+++ +++...|+.+|...+.+. ...+.++.
T Consensus 9 ~i~lLv~QL~D~~-~~V~~~A~~iL~e~c~~~-~~le~~v~ 47 (115)
T PF14663_consen 9 GIELLVTQLYDPS-PEVVAAALEILEEACEDK-EYLEYLVS 47 (115)
T ss_pred HHHHHHHHhcCCC-HHHHHHHHHHHHHHHhch-hhHHHHHH
Confidence 4788999999988 899999999999999874 55555554
No 400
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=41.71 E-value=2.3e+02 Score=24.39 Aligned_cols=129 Identities=13% Similarity=0.066 Sum_probs=73.6
Q ss_pred HhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCC---------C---------hhHHHHHHHHHHHhccCChHH
Q 014945 214 LSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSN---------D---------DEVLTDACWALSYLSDGTNDK 275 (415)
Q Consensus 214 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~---------d---------~~v~~~a~~~l~~l~~~~~~~ 275 (415)
.......|..+..|...+.........++++.+.+.|..- + ......=...|+.++.....
T Consensus 78 ~~y~~vGc~L~~~Ll~~~eG~~~l~~~~ll~qia~~L~~~d~~~g~~~~~~lfs~~~l~~tl~~~Yf~~IG~lS~~~~G- 156 (226)
T PF14666_consen 78 QKYVRVGCQLLETLLSSPEGIKYLSESKLLPQIAECLAQVDPMSGITAHDPLFSPQRLSTTLSRGYFLFIGVLSSTPNG- 156 (226)
T ss_pred hHHHHHHHHHHHHHHcCcHHHHHHHHccHHHHHHHHHHHHhhhcCCcccccccCHHHHHhhHHHHHHHHHHHHhCChhH-
Confidence 4455566666666666544344444455555555554321 1 11222334466777655544
Q ss_pred HHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHh
Q 014945 276 IQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNIT 354 (415)
Q Consensus 276 ~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~ 354 (415)
.+.+-+.+++..+..+....+. -.....+++++=.+.+.... ..|-+.|.++ +..+|..|...|..+.
T Consensus 157 l~lLe~~~if~~l~~i~~~~~~--~~l~klil~~LDY~~~~~~R--------~iLsKaLt~~-s~~iRl~aT~~L~~ll 224 (226)
T PF14666_consen 157 LKLLERWNIFTMLYHIFSLSSR--DDLLKLILSSLDYSVDGHPR--------IILSKALTSG-SESIRLYATKHLRVLL 224 (226)
T ss_pred HHHHHHCCHHHHHHHHHccCch--HHHHHHHHhhCCCCCccHHH--------HHHHHHHhcC-CHHHHHHHHHHHHHHh
Confidence 4667777999999999876533 22222355555443332322 2355677788 8899999988887654
No 401
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=41.48 E-value=1.5e+02 Score=22.27 Aligned_cols=70 Identities=20% Similarity=0.215 Sum_probs=44.4
Q ss_pred chHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCC
Q 014945 115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS 188 (415)
Q Consensus 115 ~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~ 188 (415)
++|.+...|...+.++.+..+..+++.++...+=.. .+++ ..+..++........ ...++-+|..++...
T Consensus 7 lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~-~~l~-~l~~~i~~~~~~~~~--~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 7 LLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLSD-EVLN-ALMESILKNWTQETV--QRQALICLIVLCQSQ 76 (121)
T ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcH-HHHH-HHHHHHHhccccchh--HHHHHHHHHHHHHcc
Confidence 578888999944338999999999999998543322 2221 223333333322222 478888888887443
No 402
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.95 E-value=34 Score=31.17 Aligned_cols=61 Identities=8% Similarity=0.071 Sum_probs=48.6
Q ss_pred HHHHHHHhhcCChHHHHHHHHCCChHHHHHHh--cCCCccchHHHHHHHHHHHhcCCHHHHHHH
Q 014945 303 ALRTVGNIVTGDDMQTQCIINHQALPCLLDLL--TQNYKKSIKKEACWTISNITAGNVNQIQAI 364 (415)
Q Consensus 303 a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll--~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l 364 (415)
..+.++++|...+...+.+-+.|+++.++.-. .+. +|-+++....++.++..++.++.+.+
T Consensus 376 vir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~-nPfi~e~sI~c~r~Ll~nN~~NQ~~i 438 (478)
T KOG2676|consen 376 VIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDW-NPFIREISILCTRLLLQNNIENQKII 438 (478)
T ss_pred HHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCC-ChHHHHHHHHHHHHHHhcchhhHHHH
Confidence 66789999998887777788889988877643 455 88999999999999999776654443
No 403
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=39.82 E-value=2.9e+02 Score=25.02 Aligned_cols=80 Identities=15% Similarity=0.172 Sum_probs=58.0
Q ss_pred hchHHHHHHhhcCC--ChhHHHHHHHHHHHhccCChH--HHHHHHHcCcHHHHHHhcCCC---ChhhHHHHHHHHHHhhc
Q 014945 240 RPALPALERLIHSN--DDEVLTDACWALSYLSDGTND--KIQAVIEAGVCPRLVELLRHP---SPSVLIPALRTVGNIVT 312 (415)
Q Consensus 240 ~~~l~~l~~lL~~~--d~~v~~~a~~~l~~l~~~~~~--~~~~~~~~~~i~~L~~lL~~~---~~~v~~~a~~~l~nl~~ 312 (415)
.|.+..+++.+... +...+-..+.++-....+.+. ....+.+.|+++.++.-+-++ +..+.......||.+..
T Consensus 94 ~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLRg~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v~Q~~FDLLGELiK 173 (303)
T PF12463_consen 94 KGLLSKIIHVLKKEPIDSSYRFWLARCVESFLRGATSYADQAFLAERGLLEHLVSEILSDGCMSQEVLQSNFDLLGELIK 173 (303)
T ss_pred ccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHcCCCcHHHHHHHHhcchHHHHHHHHhcCccchHHHHHHHHHHHHHHHC
Confidence 56677777666543 566777777788777766554 234577789999999987644 34688899999999999
Q ss_pred CChHHHH
Q 014945 313 GDDMQTQ 319 (415)
Q Consensus 313 ~~~~~~~ 319 (415)
++.....
T Consensus 174 ~n~~~f~ 180 (303)
T PF12463_consen 174 FNRDAFQ 180 (303)
T ss_pred CCHHHHH
Confidence 8875444
No 404
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=39.54 E-value=4.2e+02 Score=26.88 Aligned_cols=248 Identities=14% Similarity=0.137 Sum_probs=115.8
Q ss_pred CchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHh-----CCChHHHHHhhCC-CCHHHHHHHHHHHHHhcCC
Q 014945 114 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVID-----HGAVPIFVRLLSS-PTDDVREQAVWALGNVAGD 187 (415)
Q Consensus 114 g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~-----~g~i~~L~~ll~~-~~~~v~~~a~~~L~nl~~~ 187 (415)
+=++.+++-+++++ ++++..|+..+......+......+.+ ..-...|..+-.+ .+++.+..++..|.-||..
T Consensus 48 ~dLellVervqdpd-~~Lq~~aLe~lr~~irsStSSmtsvpkPlKFLrphy~~Lk~i~~~~~~~n~Kk~laDIlSvLamt 126 (878)
T KOG2005|consen 48 GDLELLVERVQDPD-PDLQKAALESLREEIRSSTSSMTSVPKPLKFLRPHYGVLKEIYESMADSNLKKWLADILSVLAMT 126 (878)
T ss_pred hhHHHHHHHhcCCC-hHHHHHHHHHHHHHHHhcccccccCCchhhhhccchhHHHHHHHhccCchhHhHHHHHHHHHhee
Confidence 34788999999999 999999999998876543222111111 0112333333333 4566778888888888855
Q ss_pred CchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCC--CCCchhhhhchHHHHHHhh-cCCChhHHHHHHHH
Q 014945 188 SPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK--PQPLFEQTRPALPALERLI-HSNDDEVLTDACWA 264 (415)
Q Consensus 188 ~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~--~~~~~~~~~~~l~~l~~lL-~~~d~~v~~~a~~~ 264 (415)
..+.... +..........+ ..... +..++.+..+..--... ..+.+.....+..-++.+. +++-+ .+|+-.
T Consensus 127 ~se~~~~-l~YRl~G~~~d~-~~WGH-eYVRhLageIaee~~~~~~e~~~~~dl~~l~~~iV~f~mkHNAE---~eAiDl 200 (878)
T KOG2005|consen 127 MSERGEH-LAYRLLGSIIDL-GSWGH-EYVRHLAGEIAEEYNNREMEAPSKADLLDLVQEIVPFHMKHNAE---FEAIDL 200 (878)
T ss_pred ecccchh-eeeeeccccCCh-hhhHH-HHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHhccch---hHHHHH
Confidence 4432222 111000000000 01112 23344444444333221 2222222233333333332 33322 233333
Q ss_pred HHHhccCChHHHHHHHHcCcHHHHHH-------hcCCCC-hhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcC
Q 014945 265 LSYLSDGTNDKIQAVIEAGVCPRLVE-------LLRHPS-PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQ 336 (415)
Q Consensus 265 l~~l~~~~~~~~~~~~~~~~i~~L~~-------lL~~~~-~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~ 336 (415)
|..+-.- +..-..++..-..++.. ++-.++ .-+...|+.+.-.+..... .....+-.+-.+.+.+...+
T Consensus 201 L~Eve~i--d~l~~~Vd~~n~~RvclYl~sc~~~lP~Pdd~~ll~~a~~IYlKf~~~~~-al~~ai~l~~~~~v~~vf~s 277 (878)
T KOG2005|consen 201 LMEVEGI--DLLLDYVDEHNYQRVCLYLTSCVPLLPGPDDVALLRTALKIYLKFNEYPR-ALVGAIRLDDMKEVKEVFTS 277 (878)
T ss_pred HHHhhhH--hHHHHHhhhhhHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHhHH-HHHHHHhcCcHHHHHHHHHh
Confidence 3332110 11111222222222222 222222 1244445544444443322 33333444556777777777
Q ss_pred CCccchHHHHHHHHHHHhc----CCHHHHHHHHHcCCHH
Q 014945 337 NYKKSIKKEACWTISNITA----GNVNQIQAIIEAGIIG 371 (415)
Q Consensus 337 ~~~~~v~~~a~~~l~nl~~----~~~~~~~~l~~~~~i~ 371 (415)
..++..++..++.|+.--. +..+..+.++.+|-+.
T Consensus 278 ~~D~~~kKQ~~ymLaR~~i~~e~~~~e~l~di~sN~~Ls 316 (878)
T KOG2005|consen 278 CTDPLLKKQMAYMLARHGIYFELSEDEELQDILSNGKLS 316 (878)
T ss_pred ccCHHHHHHHHHHHHhcCCceecCcCHHHHHHHccccHH
Confidence 6688999999999985442 1235567777665543
No 405
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=39.15 E-value=4.1e+02 Score=26.59 Aligned_cols=97 Identities=14% Similarity=0.047 Sum_probs=66.5
Q ss_pred CCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCch--hhhhchHHHH
Q 014945 169 PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLF--EQTRPALPAL 246 (415)
Q Consensus 169 ~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~--~~~~~~l~~l 246 (415)
-++.++..|...|+--+..-|. .+..-.++.+.-..| .+.+..++.....++-.|+...|.... .....+-..+
T Consensus 287 v~d~IRv~c~~~L~dwi~lvP~---yf~k~~~lry~GW~L-SDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~eRFk~rI 362 (740)
T COG5537 287 VDDVIRVLCSMSLRDWIGLVPD---YFRKILGLRYNGWSL-SDNHEGVRLLVSKILLFLCSRIPHTDAIRRFVERFKDRI 362 (740)
T ss_pred hhHHHHHHHHHHHHHHHhcchH---HHHhhhccccccccc-ccchHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 4566777777777766655543 344433555555566 777889999999999999998766552 2335556677
Q ss_pred HHhhcCCChhHHHHHHHHHHHhc
Q 014945 247 ERLIHSNDDEVLTDACWALSYLS 269 (415)
Q Consensus 247 ~~lL~~~d~~v~~~a~~~l~~l~ 269 (415)
++++..+..-|+..++..+..+.
T Consensus 363 LE~~r~D~d~VRi~sik~l~~lr 385 (740)
T COG5537 363 LEFLRTDSDCVRICSIKSLCYLR 385 (740)
T ss_pred HHHHhhccchhhHHHHHHHHHHH
Confidence 77776664448888888777764
No 406
>KOG2073 consensus SAP family cell cycle dependent phosphatase-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=37.84 E-value=3.7e+02 Score=28.25 Aligned_cols=63 Identities=19% Similarity=0.281 Sum_probs=45.9
Q ss_pred HHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcC-----CH-HHHHHHHHcCCHHHHHHHhcc
Q 014945 317 QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-----NV-NQIQAIIEAGIIGPLVNLLLN 379 (415)
Q Consensus 317 ~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~-----~~-~~~~~l~~~~~i~~L~~~l~~ 379 (415)
..+.+-+..+++.++.++...+++.++..|...|+.|++. .| ...+++...+.+..|+..+-.
T Consensus 182 Viq~l~d~~li~kll~ll~ps~~~~~qsna~~~L~~iv~~s~~~~gPn~L~~qL~s~e~ieqLl~~ml~ 250 (838)
T KOG2073|consen 182 VIQWLNDQELIPKLLELLNPSKDPDVQSNAGQTLCAIVRLSRNQPGPNPLTKQLESPETIEQLLKIMLE 250 (838)
T ss_pred HHHHHhhHHHHHHHHHHhCCccccchhHHHHHHHHHHHhcccccCCCCHHHHhhcCHHHHHHHHHHHcc
Confidence 4455555678999999998887889999999999988874 23 344555556667777766544
No 407
>PF15178 TOM_sub5: Mitochondrial import receptor subunit TOM5 homolog
Probab=37.69 E-value=49 Score=19.97 Aligned_cols=12 Identities=33% Similarity=0.459 Sum_probs=8.5
Q ss_pred CCCCchHHHHhH
Q 014945 18 VAVDAEEGRRRR 29 (415)
Q Consensus 18 ~~~~~~~~r~~r 29 (415)
+..|++|+++|-
T Consensus 9 pk~DPeE~k~km 20 (51)
T PF15178_consen 9 PKMDPEEMKRKM 20 (51)
T ss_pred CCCCHHHHHHHH
Confidence 457888887753
No 408
>PRK09169 hypothetical protein; Validated
Probab=37.64 E-value=7.7e+02 Score=29.34 Aligned_cols=91 Identities=22% Similarity=0.169 Sum_probs=43.5
Q ss_pred hHHHHHHHHHHHHHhCCCchhhHHHHh-CCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHH
Q 014945 129 PQLQFEAAWALTNIASGTSENTRVVID-HGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQ 207 (415)
Q Consensus 129 ~~i~~~a~~~L~~l~~~~~~~~~~~~~-~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~ 207 (415)
++-...++++|+..... +.++..... .+-+-.-..++..-++.=..+++|+|+..- +.+.++... ..|...
T Consensus 288 ~Q~vAN~LNALSKwp~~-~~cr~aa~~LA~rL~~~~~l~~~~~aQ~vAN~LNALSKWp-~~~~c~~Aa------~~LA~r 359 (2316)
T PRK09169 288 PQGVANALNALSKWPDT-EACRQAAEALAERLAQERGLLQAMNAQAVANALNALSKWP-DEEACRAAA------EALAAR 359 (2316)
T ss_pred HHHHHHHHHHHHhCCCc-hHHHHHHHHHHHHHHhChhhhhhCCHHHHHHHHHHHhcCC-CcHHHHHHH------HHHHHH
Confidence 55566677777776653 444433221 011111111333345555667778877654 223333322 222222
Q ss_pred hc------cchhHhHHHHHHHHHHHh
Q 014945 208 FN------EHAKLSMLRNATWTLSNF 227 (415)
Q Consensus 208 l~------~~~~~~~~~~a~~~l~~l 227 (415)
|. ..-++.=..+++|+|+..
T Consensus 360 L~~~~~l~~~~npQelANaLnALSKw 385 (2316)
T PRK09169 360 LARDAGLRRALNAQELANALNALSKW 385 (2316)
T ss_pred HHhChhhhhhCCHHHHHHHHHHHHcC
Confidence 21 233556667788887755
No 409
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=37.28 E-value=30 Score=33.09 Aligned_cols=69 Identities=19% Similarity=0.231 Sum_probs=49.2
Q ss_pred HHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhC
Q 014945 328 PCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 397 (415)
Q Consensus 328 ~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~ 397 (415)
..+-.+.-+. +++++.+|..+++|++-+........-+..+-..+++++..+.+++-+.+..|+.-+..
T Consensus 331 ~~lk~~~a~~-n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~~~~~~~~~~~~~a~~~~~~ 399 (763)
T KOG4231|consen 331 KALKSLCAHK-NPELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIVTPEPRVNKAAARALAILGE 399 (763)
T ss_pred HHHHHHhccc-ChHHHHHHHHHHHHheecccccccccCChHHHHHHHHHhcccccccchhhhHHHHHhhh
Confidence 3444444555 99999999999999997644332222233355677788888899999999999888774
No 410
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=37.18 E-value=2e+02 Score=24.09 Aligned_cols=78 Identities=18% Similarity=0.246 Sum_probs=31.9
Q ss_pred hhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHh
Q 014945 298 SVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLL 377 (415)
Q Consensus 298 ~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l 377 (415)
.+...+++.|..++.++......+.++ ++.+...+... ....--.+..++..+..++++-...+.+. .+..++.++
T Consensus 76 ~l~~~~~~lL~~f~~~n~~NQ~~l~~~--~~~l~~~~~~~-~~~~~~~~~d~l~~i~~dN~~L~~~i~e~-~I~~~i~ll 151 (207)
T PF01365_consen 76 ELFRLCYRLLRQFCRGNRENQKYLFKH--LDFLISIFMQL-QIGYGLGALDVLTEIFRDNPELCESISEE-HIEKFIELL 151 (207)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHH--HH-----HHCC-CH-TTHHHHHHHHHHHTT---------------------
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHH--HhHHHHHHHHh-hccCCchHHHHHHHHHHCcHHHHHHhhHH-HHHHHHHHH
Confidence 567889999999999988766655553 33333333222 11111346677777888777766666555 377777777
Q ss_pred cc
Q 014945 378 LN 379 (415)
Q Consensus 378 ~~ 379 (415)
..
T Consensus 152 ~~ 153 (207)
T PF01365_consen 152 RK 153 (207)
T ss_dssp --
T ss_pred HH
Confidence 65
No 411
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=36.93 E-value=1.8e+02 Score=27.42 Aligned_cols=84 Identities=17% Similarity=0.091 Sum_probs=49.3
Q ss_pred chhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHH
Q 014945 147 SENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSN 226 (415)
Q Consensus 147 ~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~ 226 (415)
+......++...+-.|+.+++++|+.-++..-.+|.++.+.-..+|..+. .+.-..+++.+.....-.=....+..++.
T Consensus 167 ~~vaK~yid~~FvlkLLdLFdSEDpRERe~LKT~LhrIygKfl~~r~fir-k~iNNif~~FIyEte~hnGIaELLEIlgS 245 (457)
T KOG2085|consen 167 PSVAKKYIDQKFVLKLLDLFDSEDPREREFLKTILHRIYGKFLVHRPFIR-KSINNIFLRFIYETERHNGIAELLEILGS 245 (457)
T ss_pred HHHHHHHhhHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhhHHHHH-HhhcchhhhhcccccccCCHHHHHHHHHH
Confidence 33445666778899999999999999988888888777654444433332 22333344444222222223444555555
Q ss_pred hhhCC
Q 014945 227 FCRGK 231 (415)
Q Consensus 227 l~~~~ 231 (415)
+..+.
T Consensus 246 iIngf 250 (457)
T KOG2085|consen 246 IINGF 250 (457)
T ss_pred hcCcc
Confidence 55544
No 412
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=36.82 E-value=4.5e+02 Score=26.34 Aligned_cols=104 Identities=8% Similarity=-0.058 Sum_probs=71.1
Q ss_pred HHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHH--HHHHHC
Q 014945 247 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQT--QCIINH 324 (415)
Q Consensus 247 ~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~--~~~~~~ 324 (415)
++-..+-++.++..+...++.-+..-++. +.+-.++...-..|++.+..++.....++-.++...+..- ..+.+
T Consensus 281 vsRy~Dv~d~IRv~c~~~L~dwi~lvP~y---f~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~e- 356 (740)
T COG5537 281 VSRYIDVDDVIRVLCSMSLRDWIGLVPDY---FRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRFVE- 356 (740)
T ss_pred hhhccchhHHHHHHHHHHHHHHHhcchHH---HHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcchHHHHHHH-
Confidence 33445557888888888888777666644 4444466777778888899999999999999998766221 12222
Q ss_pred CChHHHHHHhcCCCccchHHHHHHHHHHHhc
Q 014945 325 QALPCLLDLLTQNYKKSIKKEACWTISNITA 355 (415)
Q Consensus 325 ~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~ 355 (415)
.+-..+++++... ..-||..+...+..+..
T Consensus 357 RFk~rILE~~r~D-~d~VRi~sik~l~~lr~ 386 (740)
T COG5537 357 RFKDRILEFLRTD-SDCVRICSIKSLCYLRI 386 (740)
T ss_pred HHHHHHHHHHhhc-cchhhHHHHHHHHHHHH
Confidence 4556777777666 44477777777665553
No 413
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=36.71 E-value=2.5e+02 Score=23.74 Aligned_cols=75 Identities=16% Similarity=0.150 Sum_probs=49.2
Q ss_pred HHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHH
Q 014945 285 CPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAI 364 (415)
Q Consensus 285 i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l 364 (415)
.+.+.....+++.-.+..|+.+.-......+ .. -+...+..++.++ +.-|++...|+|..++..+++.+..+
T Consensus 117 ~~~l~~W~~s~~~W~rR~ai~~~l~~~~~~~--~~-----~l~~~~~~~~~d~-e~fI~KAiGW~LRe~~k~d~~~V~~f 188 (208)
T cd07064 117 EPVMDEWSTDENFWLRRTAILHQLKYKEKTD--TD-----LLFEIILANLGSK-EFFIRKAIGWALREYSKTNPDWVRDF 188 (208)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHHHccC--HH-----HHHHHHHHhCCCh-HHHHHHHHHHHHHHHhccCHHHHHHH
Confidence 3567777778887777777654333332222 11 1233455566677 88999999999999999888877666
Q ss_pred HHc
Q 014945 365 IEA 367 (415)
Q Consensus 365 ~~~ 367 (415)
++.
T Consensus 189 l~~ 191 (208)
T cd07064 189 VAA 191 (208)
T ss_pred HHH
Confidence 643
No 414
>PF09758 FPL: Uncharacterised conserved protein; InterPro: IPR019155 The proteins in this family are functionally uncharacterised. They contain a highly conserved FPL motif.
Probab=36.47 E-value=1.4e+02 Score=23.69 Aligned_cols=126 Identities=9% Similarity=0.110 Sum_probs=80.8
Q ss_pred CChHHHHHHHHcCcHHHHHHhcCC-CChhhHHHHHHHHHHhhcCC--hHHHHHHHHCCChHHHHHHhcCCCccchHHHHH
Q 014945 271 GTNDKIQAVIEAGVCPRLVELLRH-PSPSVLIPALRTVGNIVTGD--DMQTQCIINHQALPCLLDLLTQNYKKSIKKEAC 347 (415)
Q Consensus 271 ~~~~~~~~~~~~~~i~~L~~lL~~-~~~~v~~~a~~~l~nl~~~~--~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~ 347 (415)
++++..+.+.+.+++..+++++.. ....++...+.+++-+...- +.....++..+.+..++..--+-.+.++...=.
T Consensus 14 ~~~~~Fd~F~E~nil~~f~~il~~~~~~~V~~QlLQtlsiLiqNi~~~~slyyllSnn~iN~iI~~~~d~~~ee~l~yYI 93 (149)
T PF09758_consen 14 NDPSFFDFFMEKNILSTFVRILKQSRSSSVKLQLLQTLSILIQNIRSETSLYYLLSNNHINEIITYPFDFSDEEVLSYYI 93 (149)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhcCCCcceEEEecchHHHHHHhcCCCCCcchhHHHHH
Confidence 455677888999999999999976 56678888888888777532 223334455566655555433332566666666
Q ss_pred HHHHHHhc-CCHHHHHHHHH--cCCHHHH---HHHhccCCHHHHHHHHHHHHHHh
Q 014945 348 WTISNITA-GNVNQIQAIIE--AGIIGPL---VNLLLNAEFEIKKEAAWAISNAT 396 (415)
Q Consensus 348 ~~l~nl~~-~~~~~~~~l~~--~~~i~~L---~~~l~~~~~~v~~~a~~aL~nl~ 396 (415)
..|-.++- -+++.++.+.+ .+-+|.+ +++..++|.-+|.++-..+-|+.
T Consensus 94 sfLK~lSlkln~~tv~fffn~~~~~FPL~~~aikf~~h~d~Mvr~avR~i~Lni~ 148 (149)
T PF09758_consen 94 SFLKTLSLKLNKDTVQFFFNERNDSFPLYTEAIKFYNHPDSMVRTAVRTITLNIY 148 (149)
T ss_pred HHHHHHHhhcCCCceeEeEecCCCCCCcHHHHHHhhcCcchHHHHHHHHHHHhhc
Confidence 66666665 24455555553 3345544 45556788888887777666653
No 415
>PF08454 RIH_assoc: RyR and IP3R Homology associated; InterPro: IPR013662 This eukaryotic domain is found in ryanodine receptors (RyR) and inositol 1, 4, 5-trisphosphate receptors (IP3R) which together form a superfamily of homotetrameric ligand-gated intracellular Ca2+ channels []. There seems to be no known function for this domain []. Also see the IP3-binding domain IPR000699 from INTERPRO and IPR003608 from INTERPRO.
Probab=36.05 E-value=1.8e+02 Score=21.62 Aligned_cols=41 Identities=20% Similarity=0.300 Sum_probs=31.0
Q ss_pred ChhhHHHHHHHHHHhhcC-ChHHHHHHHHCCChHHHHHHhcC
Q 014945 296 SPSVLIPALRTVGNIVTG-DDMQTQCIINHQALPCLLDLLTQ 336 (415)
Q Consensus 296 ~~~v~~~a~~~l~nl~~~-~~~~~~~~~~~~~l~~L~~ll~~ 336 (415)
+-.+...++.+|..++.| ..+....+.+..+++.+..++..
T Consensus 66 ~~~~~~q~~~tL~E~iQGPC~eNQ~~l~~s~~~~~i~~lL~~ 107 (109)
T PF08454_consen 66 NIELIIQCFDTLTEFIQGPCIENQIALANSKFLDIINDLLSK 107 (109)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHhHHHHHHccHHHHHHHHHhh
Confidence 445677788888888888 55666677788888888887753
No 416
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=35.84 E-value=2.1e+02 Score=28.43 Aligned_cols=77 Identities=17% Similarity=0.090 Sum_probs=50.3
Q ss_pred ChHHHHHHhcCCCccchHHHHHHHHHHHhc-CCHHHHH-HHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCHHH
Q 014945 326 ALPCLLDLLTQNYKKSIKKEACWTISNITA-GNVNQIQ-AIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQ 403 (415)
Q Consensus 326 ~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~-~~~~~~~-~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~ 403 (415)
++-.+..++.+.....++-.++..++.+.. ..++..+ .+..+ +....-.+|.+.+.-+...|+.|.+.++...+.++
T Consensus 480 v~~~l~~l~~~~pp~~~kl~~~~FLs~lg~~~i~~~~q~~~~~~-Ls~Lf~~LL~d~~Wll~q~ALeAF~~FAe~T~~e~ 558 (559)
T PF14868_consen 480 VLTELTSLFKSEPPDHVKLALLDFLSSLGKLFIPESDQNPVSPA-LSELFHMLLADRHWLLHQHALEAFGQFAERTSHEE 558 (559)
T ss_pred HHHHHHHHHhhCCCccchHHHHHHHHHhccccCCccccchhhhH-HHHHHHHHhcCCcHHHHHHHHHHHHHHhccCCccc
Confidence 444556666554356688888888888886 2222222 22221 33344445678899999999999999998866543
No 417
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=35.68 E-value=93 Score=27.98 Aligned_cols=54 Identities=26% Similarity=0.255 Sum_probs=41.5
Q ss_pred CChHHHHHHhcCCCccchHHHHHHHHHHHhcCC-------HHH-------HHHHHHcCCHHHHHHHhcc
Q 014945 325 QALPCLLDLLTQNYKKSIKKEACWTISNITAGN-------VNQ-------IQAIIEAGIIGPLVNLLLN 379 (415)
Q Consensus 325 ~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~-------~~~-------~~~l~~~~~i~~L~~~l~~ 379 (415)
..+..++.-|.++ +...|..|+.+|..++.|. .++ ...+.+.|+++.|+.+|..
T Consensus 60 ~~i~~ll~~L~~~-~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~~ 127 (293)
T PF07923_consen 60 DFIEKLLDQLESS-DSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLKM 127 (293)
T ss_pred HHHHHHHHhcccc-chhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 5567788888888 8889999999999998753 233 3455678999999998853
No 418
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=35.49 E-value=1.9e+02 Score=21.71 Aligned_cols=72 Identities=15% Similarity=0.134 Sum_probs=45.9
Q ss_pred hhchHHHHHHhhc-CCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCC
Q 014945 239 TRPALPALERLIH-SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGD 314 (415)
Q Consensus 239 ~~~~l~~l~~lL~-~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~ 314 (415)
+..++|.+.+.|. +..++.+..+...++.++...+=. ..+++ .++..+......... ...++.++..++...
T Consensus 4 l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~-~~~l~-~l~~~i~~~~~~~~~--~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 4 LPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLS-DEVLN-ALMESILKNWTQETV--QRQALICLIVLCQSQ 76 (121)
T ss_pred HHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCc-HHHHH-HHHHHHHhccccchh--HHHHHHHHHHHHHcc
Confidence 4567899999998 678899999999999998654311 11211 123333333332222 478888898888654
No 419
>PRK09169 hypothetical protein; Validated
Probab=35.45 E-value=8.4e+02 Score=29.09 Aligned_cols=10 Identities=30% Similarity=0.092 Sum_probs=4.9
Q ss_pred HHHHHHHHHH
Q 014945 386 KEAAWAISNA 395 (415)
Q Consensus 386 ~~a~~aL~nl 395 (415)
.+++|+|+..
T Consensus 502 AN~LnALsKw 511 (2316)
T PRK09169 502 ANALNALSKW 511 (2316)
T ss_pred HHHHHHHhcC
Confidence 4455555543
No 420
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=35.25 E-value=3.2e+02 Score=24.17 Aligned_cols=44 Identities=23% Similarity=0.238 Sum_probs=32.0
Q ss_pred HHHHHHcCCHHHHHHHhccC-CHHHHHHHHHHHHHHhCCCCHHHH
Q 014945 361 IQAIIEAGIIGPLVNLLLNA-EFEIKKEAAWAISNATSGGSNEQI 404 (415)
Q Consensus 361 ~~~l~~~~~i~~L~~~l~~~-~~~v~~~a~~aL~nl~~~~~~~~~ 404 (415)
+..+.++|+...|+.+..+. ..+.....+..+..+..+.+++.+
T Consensus 171 i~~l~~~~v~~lLL~l~s~~~~~~f~~~lLEIi~ll~k~~~p~~L 215 (266)
T PF04821_consen 171 IWALFESGVLDLLLTLASSPQESDFNLLLLEIIYLLFKGQDPESL 215 (266)
T ss_pred HHHHHHcCHHHHHHHHHhCccccchhhHHHHHHHHHHcCCCHHHH
Confidence 34556789999999998875 334445788888888887776654
No 421
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=35.03 E-value=6.4e+02 Score=31.39 Aligned_cols=154 Identities=9% Similarity=0.020 Sum_probs=78.5
Q ss_pred hhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhc---------CCCChhhHHHHHHHHH
Q 014945 238 QTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL---------RHPSPSVLIPALRTVG 308 (415)
Q Consensus 238 ~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL---------~~~~~~v~~~a~~~l~ 308 (415)
....++..++.-|.+++..|+..+..+|.+++.....-...+ +.++.+++ ....-.++.-.+.++.
T Consensus 1123 ~~~~~~~~lv~eL~npN~~VR~~~~~~L~~i~~~s~~~v~~L-----~~p~K~~ll~p~f~k~lr~~p~~~qig~vd~~~ 1197 (3550)
T KOG0889|consen 1123 SAMNVFSPLVLELFNPNSDVREFSQKLLRLISELSGKSVVKL-----LEPFKDVLLSPIFKKPLRALPFTIQIGHLDAIT 1197 (3550)
T ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHcCCcHHHH-----HHHHHHHHhccccccccccCCHHHHhhhHHHHH
Confidence 446777788888888999999999999998875442111111 22222222 1222233333333333
Q ss_pred HhhcCCh-------HHHHHH--HH-------CCChHHHHHHhcCCC---ccchHHHHHHHHHHHhcCCHH---HHHHHHH
Q 014945 309 NIVTGDD-------MQTQCI--IN-------HQALPCLLDLLTQNY---KKSIKKEACWTISNITAGNVN---QIQAIIE 366 (415)
Q Consensus 309 nl~~~~~-------~~~~~~--~~-------~~~l~~L~~ll~~~~---~~~v~~~a~~~l~nl~~~~~~---~~~~l~~ 366 (415)
..+.-.+ +..... .. ....- +.+...... .-..|..+..+++..+...+. +... ..
T Consensus 1198 fC~~l~p~~f~~~~~l~~l~~~~~~La~~~~~~~~~-i~k~~~~k~~~~l~~Lr~~ci~ll~~~~~~~d~~~~~~~~-~r 1275 (3550)
T KOG0889|consen 1198 FCLSLGPCLFDFTEELYRLKRFLIALADAEEDELAT-IQKTSDYKNSSSLVRLRVACIKLLAACMKLSDFRTPQHAE-LR 1275 (3550)
T ss_pred HHHHcCCcccCchHHHHHHHHHHHHhhhhhhhhhhh-hhcccccccccccccchhHHHHHHHHHHhcccccchhhhh-hh
Confidence 3332221 111100 00 00000 222221110 122355555555544432111 1122 23
Q ss_pred cCCHHHHHHHhccCCHHHHHHHHHHHHHHhCC
Q 014945 367 AGIIGPLVNLLLNAEFEIKKEAAWAISNATSG 398 (415)
Q Consensus 367 ~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~ 398 (415)
.+++..+...+....+++...|..++......
T Consensus 1276 ~kii~v~fk~l~~~~~Ei~~~~~~~l~~v~~~ 1307 (3550)
T KOG0889|consen 1276 EKIIAVFFKSLYKRSSELIEVALEGLRKVLAQ 1307 (3550)
T ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHhhhhc
Confidence 45788888989889999999999999888765
No 422
>PLN03205 ATR interacting protein; Provisional
Probab=34.75 E-value=2.1e+02 Score=26.84 Aligned_cols=114 Identities=13% Similarity=0.181 Sum_probs=66.0
Q ss_pred HHHHHHhcCCCChhhHHHHHHHHHHhhc---CChHHHHHHHHCCChH---HHHHHhcCCCccchHHHHHHHHHHHhc--C
Q 014945 285 CPRLVELLRHPSPSVLIPALRTVGNIVT---GDDMQTQCIINHQALP---CLLDLLTQNYKKSIKKEACWTISNITA--G 356 (415)
Q Consensus 285 i~~L~~lL~~~~~~v~~~a~~~l~nl~~---~~~~~~~~~~~~~~l~---~L~~ll~~~~~~~v~~~a~~~l~nl~~--~ 356 (415)
++.|+.+-.-++..+...+++.|..+.. ++......-.+.+++. .+.+.-.......||-+|..+..-|.. +
T Consensus 325 lEaLLdLC~v~n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NWvsLfElm~QiAv~~TEE~VrLEAvSIMnVIlmssn 404 (652)
T PLN03205 325 VEPLLDLCKAETAVLVHRSLRVLHVLLEHICGDEKRFEASWDANWHSLFELMNQIASIRTEEDVKLEALSIMNIIVMSTD 404 (652)
T ss_pred HHHHHHHHhcCchhhhHHHHHHHHHHHHHHhCCcccccccccccHHHHHHHHHHHHhccchhheeeehhhhhHHhhhccc
Confidence 3455555555666666666666554432 2222223333444332 233322222266788888776655554 2
Q ss_pred CHHHHHHHHHcCCHHHHHHHhcc-CCHHHHHHHHHHHHHHhCC
Q 014945 357 NVNQIQAIIEAGIIGPLVNLLLN-AEFEIKKEAAWAISNATSG 398 (415)
Q Consensus 357 ~~~~~~~l~~~~~i~~L~~~l~~-~~~~v~~~a~~aL~nl~~~ 398 (415)
....+..+-...+++.+-.+|+. .-..|+++|+..|.-+...
T Consensus 405 a~~eREkFG~~~VfESiaQLLkkEaGl~VqKealhLLfLLLNC 447 (652)
T PLN03205 405 AYTARESFVSKEVFESISLLLRKEGGLHVRKEAIHLFYLLLNC 447 (652)
T ss_pred hhHHHHHhcchHHHHHHHHHHHHhccchhhHHHHHHHHHHHcC
Confidence 33344555556688888888886 4478999999988877654
No 423
>COG2914 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.42 E-value=24 Score=25.19 Aligned_cols=29 Identities=28% Similarity=0.453 Sum_probs=23.3
Q ss_pred HHHhhhccC-CCCchHHHHhHHHHHHHHHH
Q 014945 10 EVRRSKYKV-AVDAEEGRRRREDNMVEIRK 38 (415)
Q Consensus 10 ~~~~~~~k~-~~~~~~~r~~r~~~~~~lRk 38 (415)
.+|-.-|++ -.|+.|.||||.+.+...++
T Consensus 68 gDRVEIyRPLlaDPKE~RR~Ra~~~~~~~~ 97 (99)
T COG2914 68 GDRVEIYRPLLADPKEARRKRAERAAAAKK 97 (99)
T ss_pred CCEEEEecccccChHHHHHHHHHHHHHhhc
Confidence 467778899 78999999999887766543
No 424
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.19 E-value=7.2e+02 Score=27.86 Aligned_cols=220 Identities=16% Similarity=0.133 Sum_probs=109.7
Q ss_pred hHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCC-------CCHHHHHHHHHHHHHhcCCCchhHHHHHhcCCh
Q 014945 129 PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-------PTDDVREQAVWALGNVAGDSPKCRDLVLSNGAL 201 (415)
Q Consensus 129 ~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-------~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i 201 (415)
-+++...+.++.++....-++. +. | .+.+.+++++ ....+.+.+..+|.-++.|.-..-..-.-.+.+
T Consensus 856 ~evr~~sl~~l~silet~ge~l---l~-~-w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~~li 930 (1610)
T KOG1848|consen 856 VEVRISSLEALVSILETVGEHL---LH-G-WQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCILDLI 930 (1610)
T ss_pred ceeeHHHHHHHHHHHhccchhh---cc-c-cHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHHHHH
Confidence 5778888888888876433322 11 2 4444444432 245677888888888876642211122223456
Q ss_pred HHHHHHhccchhHhHHHHHH---HHHHHhhhCC--CCCchhh-----------------h-hc----hHHHHHHhhcCCC
Q 014945 202 MPLLAQFNEHAKLSMLRNAT---WTLSNFCRGK--PQPLFEQ-----------------T-RP----ALPALERLIHSND 254 (415)
Q Consensus 202 ~~L~~~l~~~~~~~~~~~a~---~~l~~l~~~~--~~~~~~~-----------------~-~~----~l~~l~~lL~~~d 254 (415)
+.+...-.+..|..+--.|+ |+++-....+ ....... . .+ ++..|.++-.++-
T Consensus 931 dtl~~fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~ss~~~~~~l~e~lwi~ll~~L~~~~~dsr 1010 (1610)
T KOG1848|consen 931 DTLLVFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYSSMKSKEILPEVLWIMLLVHLADLCEDSR 1010 (1610)
T ss_pred HHHHHHHhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcccccchhhhhhHHHHHHHHHHHHHhccch
Confidence 66666665555554444444 4443333221 0000000 0 11 1222233334455
Q ss_pred hhHHHHHHHHHHHhccCChHHH-HHHHHcCcHHHHHHhcCCC---------C----hhhHHHHHHHHHHhhcCChHHHHH
Q 014945 255 DEVLTDACWALSYLSDGTNDKI-QAVIEAGVCPRLVELLRHP---------S----PSVLIPALRTVGNIVTGDDMQTQC 320 (415)
Q Consensus 255 ~~v~~~a~~~l~~l~~~~~~~~-~~~~~~~~i~~L~~lL~~~---------~----~~v~~~a~~~l~nl~~~~~~~~~~ 320 (415)
.+|+..|+.++..+........ ..+.+.-+...+..+|... . ...-+..+.+|+-|+.-..++...
T Consensus 1011 ~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~ltisgIaklf~e~fk~ 1090 (1610)
T KOG1848|consen 1011 AEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSCLTISGIAKLFSENFKL 1090 (1610)
T ss_pred HHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 7788888888777654322111 1122223345555666411 1 112345666777777655566665
Q ss_pred HHHC-C-------ChHHHHHHhcCCCccchHHHHHHHHHHHh
Q 014945 321 IINH-Q-------ALPCLLDLLTQNYKKSIKKEACWTISNIT 354 (415)
Q Consensus 321 ~~~~-~-------~l~~L~~ll~~~~~~~v~~~a~~~l~nl~ 354 (415)
+.+. | ++..+..+..+. .+++.-.|..++..+.
T Consensus 1091 llnln~f~~vwe~ll~flkrl~s~~-s~e~slsai~~~qell 1131 (1610)
T KOG1848|consen 1091 LLNLNGFLDVWEELLQFLKRLHSDI-SPEISLSAIKALQELL 1131 (1610)
T ss_pred HHhcccHHHHHHHHHHHHHHHHhcC-ChHhHHHHHHHHHHHH
Confidence 5544 2 233444444555 7777777766655433
No 425
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=31.58 E-value=2e+02 Score=21.26 Aligned_cols=88 Identities=7% Similarity=0.096 Sum_probs=55.1
Q ss_pred CChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHH
Q 014945 295 PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLV 374 (415)
Q Consensus 295 ~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~ 374 (415)
..+.+.....+++.+.- ... .++..+.+.+... .+.-+-.+.+++-.++..............+.+.+.
T Consensus 17 S~~~I~~lt~~a~~~~~-----~a~-----~iv~~i~~~i~~~-~~~~KL~~LYL~dsIvkn~~~~~~~~~~~~~~~~f~ 85 (114)
T cd03562 17 SQPSIQTLTKLAIENRK-----HAK-----EIVEIIEKHIKKC-PPEQKLPLLYLLDSIVKNVGRKYKEFFSEFLVPLFL 85 (114)
T ss_pred cHHHHHHHHHHHHHHHH-----HHH-----HHHHHHHHHHHhC-CcccchHHHHHHHHHHHHcccchHHHHHHHHHHHHH
Confidence 44556666666666652 222 3455666777666 667777888888888874333333444444577777
Q ss_pred HHhccCCHHHHHHHHHHHH
Q 014945 375 NLLLNAEFEIKKEAAWAIS 393 (415)
Q Consensus 375 ~~l~~~~~~v~~~a~~aL~ 393 (415)
..+...+++++......+.
T Consensus 86 ~~~~~~~~~~r~kl~rl~~ 104 (114)
T cd03562 86 DAYEKVDEKTRKKLERLLN 104 (114)
T ss_pred HHHHhCCHHHHHHHHHHHH
Confidence 7777788888876555443
No 426
>KOG2152 consensus Sister chromatid cohesion protein [Cell cycle control, cell division, chromosome partitioning]
Probab=31.50 E-value=4.8e+02 Score=26.84 Aligned_cols=54 Identities=13% Similarity=0.136 Sum_probs=38.1
Q ss_pred HHHHHHHhc----CCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhC
Q 014945 177 AVWALGNVA----GDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 230 (415)
Q Consensus 177 a~~~L~nl~----~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~ 230 (415)
...||..|+ ...|.+|..+-..|++..++..+.++...+...-+..+|.+|...
T Consensus 349 ~trCLSaISla~Kc~~p~FR~~lRa~G~v~~vfkalmDs~~~d~Lsl~tsalMylLs~ 406 (865)
T KOG2152|consen 349 ETRCLSAISLADKCVMPDFRMHLRAHGMVDAVFKALMDSHEDDLLSLCTSALMYLLSR 406 (865)
T ss_pred HHHHHhhhhhhhhccChHHHHHHHHcccHHHHHHHHhccccchhhHHHHHHHHHHHhh
Confidence 334444444 345789999999999999999996666555566666677766654
No 427
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=31.45 E-value=3.9e+02 Score=24.08 Aligned_cols=135 Identities=16% Similarity=0.161 Sum_probs=71.6
Q ss_pred hCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhcc-----chhHhHHHHHHHHHHHhhhCCCCCchhhhh
Q 014945 166 LSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE-----HAKLSMLRNATWTLSNFCRGKPQPLFEQTR 240 (415)
Q Consensus 166 l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~-----~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~ 240 (415)
++..+..++..|+.+|.+=+ ...+ .+|.++.++.. -.+...........+.|..+..--....+.
T Consensus 207 ~dEs~~~~r~aAl~sLr~ds----GlhQ------LvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~sLL~N~~iFvdPY~h 276 (450)
T COG5095 207 LDESDEQTRDAALESLRNDS----GLHQ------LVPYFIHFFNEQITKNLKNLEKLTTVVMMYSSLLKNKYIFVDPYLH 276 (450)
T ss_pred HHHHHHHHHHHHHHHhccCc----cHHH------HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCceeecHHHH
Confidence 44556777777877776422 2211 34556665522 135556666667777777665444445567
Q ss_pred chHHHHHHhh-----cCCC-----hhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHh-cCCC-ChhhHHHHHHHHH
Q 014945 241 PALPALERLI-----HSND-----DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL-LRHP-SPSVLIPALRTVG 308 (415)
Q Consensus 241 ~~l~~l~~lL-----~~~d-----~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~l-L~~~-~~~v~~~a~~~l~ 308 (415)
.++|.++.++ .+.+ ..++.-|+..+.+.+...+.... -+...+...+... |... .....--|+..++
T Consensus 277 qlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~Yk-tLkPRvtrTllKafLD~~k~~sT~YGalkgls 355 (450)
T COG5095 277 QLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYK-TLKPRVTRTLLKAFLDREKTESTQYGALKGLS 355 (450)
T ss_pred HHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhh-hhchHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 7777776655 2222 23777778888887765543322 2222333333333 3322 2234445555555
Q ss_pred Hhh
Q 014945 309 NIV 311 (415)
Q Consensus 309 nl~ 311 (415)
-+.
T Consensus 356 ~l~ 358 (450)
T COG5095 356 ILS 358 (450)
T ss_pred hhc
Confidence 543
No 428
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=31.36 E-value=1e+02 Score=27.67 Aligned_cols=54 Identities=20% Similarity=0.275 Sum_probs=42.4
Q ss_pred cCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCCh--------------HHHHHHHHCCChHHHHHHhc
Q 014945 282 AGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD--------------MQTQCIINHQALPCLLDLLT 335 (415)
Q Consensus 282 ~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~--------------~~~~~~~~~~~l~~L~~ll~ 335 (415)
...+..++.-|.+.+...+..|+++|.-++.|.- .+...+.+.|+++.+..+|.
T Consensus 59 ~~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~ 126 (293)
T PF07923_consen 59 KDFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLK 126 (293)
T ss_pred HHHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 4567888888888888889999999999987652 23445567899999999884
No 429
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=31.00 E-value=1.3e+02 Score=24.51 Aligned_cols=77 Identities=13% Similarity=0.074 Sum_probs=52.2
Q ss_pred hhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHh
Q 014945 255 DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLL 334 (415)
Q Consensus 255 ~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll 334 (415)
-++|..|..++..+.+....... + ..+++.+..-|.+ +.+++..+...+.+++...+.....-++ .+++.+-..+
T Consensus 41 LelRK~ayE~lytlLd~~~~~~~-~--~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~~v~~~Ld-~l~~~l~~~L 115 (169)
T PF08623_consen 41 LELRKAAYECLYTLLDTCLSRID-I--SEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPEEVLQRLD-SLVEPLRKTL 115 (169)
T ss_dssp GHHHHHHHHHHHHHHHSTCSSS--H--HHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HHHHHHCCT-TTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC-H--HHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHHHHHHHHH-HHHHHHHHHh
Confidence 56888888888887554333322 1 2346778888887 8899999999999999887755443333 6777777777
Q ss_pred cC
Q 014945 335 TQ 336 (415)
Q Consensus 335 ~~ 336 (415)
..
T Consensus 116 ~~ 117 (169)
T PF08623_consen 116 SK 117 (169)
T ss_dssp H-
T ss_pred hc
Confidence 43
No 430
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=30.36 E-value=2.3e+02 Score=21.02 Aligned_cols=70 Identities=7% Similarity=0.009 Sum_probs=50.1
Q ss_pred ChHHHHHHhcCCCccchHHHHHHHHHHHhc-CCHHHHHHHHHcCCHHHHHHHh------ccCCHHHHHHHHHHHHHHh
Q 014945 326 ALPCLLDLLTQNYKKSIKKEACWTISNITA-GNVNQIQAIIEAGIIGPLVNLL------LNAEFEIKKEAAWAISNAT 396 (415)
Q Consensus 326 ~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~-~~~~~~~~l~~~~~i~~L~~~l------~~~~~~v~~~a~~aL~nl~ 396 (415)
++..|.+-|.++ ++.+...|..+|-.++. +++.....+....++..++++. ...+..||..+...+...+
T Consensus 38 ~~~~l~kRl~~~-~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w~ 114 (115)
T cd00197 38 AVDAIKKRINNK-NPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLWA 114 (115)
T ss_pred HHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHHh
Confidence 456778888888 99999999999999998 4556566666666666665431 1236788988888776543
No 431
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=29.83 E-value=3.8e+02 Score=24.17 Aligned_cols=111 Identities=14% Similarity=0.093 Sum_probs=52.0
Q ss_pred ChHHHHHhhCC------CCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhc-----cc----hhHhHHHHHHH
Q 014945 158 AVPIFVRLLSS------PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN-----EH----AKLSMLRNATW 222 (415)
Q Consensus 158 ~i~~L~~ll~~------~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~-----~~----~~~~~~~~a~~ 222 (415)
.+|.++.++.. .+-+.....+...+.+..+..-+-+..+. ..+|.++.++- .. ..-.++..|+.
T Consensus 231 LvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~sLL~N~~iFvdPY~h-qlmPSilTcliakklg~~p~dhe~~alRd~AA~ 309 (450)
T COG5095 231 LVPYFIHFFNEQITKNLKNLEKLTTVVMMYSSLLKNKYIFVDPYLH-QLMPSILTCLIAKKLGNVPDDHEHYALRDVAAD 309 (450)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCceeecHHHH-HHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHH
Confidence 46777777653 23333334444444444333222222222 24555555542 11 12347777888
Q ss_pred HHHHhhhCCCCCchhhhhchHHHHHH-hhcCC-ChhHHHHHHHHHHHhc
Q 014945 223 TLSNFCRGKPQPLFEQTRPALPALER-LIHSN-DDEVLTDACWALSYLS 269 (415)
Q Consensus 223 ~l~~l~~~~~~~~~~~~~~~l~~l~~-lL~~~-d~~v~~~a~~~l~~l~ 269 (415)
.+...+...+..-......+...+.+ +|... .......|+..++.+.
T Consensus 310 ll~yV~~~F~~~YktLkPRvtrTllKafLD~~k~~sT~YGalkgls~l~ 358 (450)
T COG5095 310 LLKYVFSNFSSSYKTLKPRVTRTLLKAFLDREKTESTQYGALKGLSILS 358 (450)
T ss_pred HHHHHHhhhhHhhhhhchHHHHHHHHHHHhcccccchhhhhhhhhhhhc
Confidence 88777766543332222333333333 23222 2344555666666554
No 432
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=28.30 E-value=2.5e+02 Score=20.78 Aligned_cols=86 Identities=10% Similarity=0.093 Sum_probs=46.1
Q ss_pred hhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHh
Q 014945 212 AKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL 291 (415)
Q Consensus 212 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~l 291 (415)
+.+.+..-..|++.+.... ..++..+...+....+.-+-.++..+-.++.+........+...+.+.+...
T Consensus 17 S~~~I~~lt~~a~~~~~~a---------~~iv~~i~~~i~~~~~~~KL~~LYL~dsIvkn~~~~~~~~~~~~~~~~f~~~ 87 (114)
T cd03562 17 SQPSIQTLTKLAIENRKHA---------KEIVEIIEKHIKKCPPEQKLPLLYLLDSIVKNVGRKYKEFFSEFLVPLFLDA 87 (114)
T ss_pred cHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHhCCcccchHHHHHHHHHHHHcccchHHHHHHHHHHHHHHH
Confidence 4555666667777665322 3455556666666666666677777766665543333333333334444444
Q ss_pred cCCCChhhHHHHHHH
Q 014945 292 LRHPSPSVLIPALRT 306 (415)
Q Consensus 292 L~~~~~~v~~~a~~~ 306 (415)
....++.++....+.
T Consensus 88 ~~~~~~~~r~kl~rl 102 (114)
T cd03562 88 YEKVDEKTRKKLERL 102 (114)
T ss_pred HHhCCHHHHHHHHHH
Confidence 444555555444333
No 433
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=27.68 E-value=3.7e+02 Score=22.64 Aligned_cols=134 Identities=15% Similarity=0.101 Sum_probs=76.4
Q ss_pred HhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCC-CChhhHHH-HHHHHHHhhcCChHHHHHHHHCC
Q 014945 248 RLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-PSPSVLIP-ALRTVGNIVTGDDMQTQCIINHQ 325 (415)
Q Consensus 248 ~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~-~~~~v~~~-a~~~l~nl~~~~~~~~~~~~~~~ 325 (415)
.+.+++--+.+..++..+.......+ .+-++.+..++.+ +++.+... +-.++|.+....+ .
T Consensus 53 ~Lw~~~~~E~r~~al~~l~~~~~~~~--------~~~~~~~~~~l~~~~~Wd~vD~~~~~i~g~~~~~~~---------~ 115 (208)
T cd07064 53 ELWQQPEREYQYVAIDLLRKYKKFLT--------PEDLPLLEELITTKSWWDTVDSLAKVVGGILLADYP---------E 115 (208)
T ss_pred HHHcchHHHHHHHHHHHHHHHHhcCC--------HHHHHHHHHHHcCCchHHHHHHHHHHHhHHHHhCCh---------h
Confidence 34444445566666555544321111 1123444445543 34555554 3344555544333 2
Q ss_pred ChHHHHHHhcCCCccchHHHHHHHHHHHhc-CCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCHHHH
Q 014945 326 ALPCLLDLLTQNYKKSIKKEACWTISNITA-GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQI 404 (415)
Q Consensus 326 ~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~-~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~ 404 (415)
..+.+.....++ +.-+|..|+.+...... ++.+.. ...+...+.+++.-|++...|+|..++...+..-+
T Consensus 116 ~~~~l~~W~~s~-~~W~rR~ai~~~l~~~~~~~~~~l--------~~~~~~~~~d~e~fI~KAiGW~LRe~~k~d~~~V~ 186 (208)
T cd07064 116 FEPVMDEWSTDE-NFWLRRTAILHQLKYKEKTDTDLL--------FEIILANLGSKEFFIRKAIGWALREYSKTNPDWVR 186 (208)
T ss_pred HHHHHHHHHcCC-cHHHHHHHHHHHHHHHHccCHHHH--------HHHHHHhCCChHHHHHHHHHHHHHHHhccCHHHHH
Confidence 246777888888 88888888766544443 333321 23344456677788999999999999998555544
Q ss_pred HHH
Q 014945 405 KYK 407 (415)
Q Consensus 405 ~~l 407 (415)
.++
T Consensus 187 ~fl 189 (208)
T cd07064 187 DFV 189 (208)
T ss_pred HHH
Confidence 555
No 434
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=26.91 E-value=1.4e+02 Score=25.14 Aligned_cols=78 Identities=12% Similarity=0.121 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccch-hHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHh
Q 014945 171 DDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA-KLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERL 249 (415)
Q Consensus 171 ~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~l 249 (415)
..+...|...|..++.+++.++..+.+ .++.++..+.... ... ..+..++..+..+.+..........+..++.+
T Consensus 75 ~~l~~~~~~lL~~f~~~n~~NQ~~l~~--~~~~l~~~~~~~~~~~~--~~~~d~l~~i~~dN~~L~~~i~e~~I~~~i~l 150 (207)
T PF01365_consen 75 KELFRLCYRLLRQFCRGNRENQKYLFK--HLDFLISIFMQLQIGYG--LGALDVLTEIFRDNPELCESISEEHIEKFIEL 150 (207)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHH--HHH-----HHCCCH-TT--HHHHHHHHHHHTT-------------------
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHH--HHhHHHHHHHHhhccCC--chHHHHHHHHHHCcHHHHHHhhHHHHHHHHHH
Confidence 357778888899999888877666655 2333323221111 111 12344455555544333333333445555555
Q ss_pred hcC
Q 014945 250 IHS 252 (415)
Q Consensus 250 L~~ 252 (415)
+..
T Consensus 151 l~~ 153 (207)
T PF01365_consen 151 LRK 153 (207)
T ss_dssp ---
T ss_pred HHH
Confidence 544
No 435
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=25.98 E-value=25 Score=30.17 Aligned_cols=23 Identities=13% Similarity=0.024 Sum_probs=20.5
Q ss_pred hHHHHHHHHHHHhhhHHHHhhhh
Q 014945 28 RREDNMVEIRKNKREESLLKKRR 50 (415)
Q Consensus 28 ~r~~~~~~lRk~~r~~~~~~~R~ 50 (415)
-|+.+..++|+.||++.+..+|.
T Consensus 11 ~r~~~~~~~~~~k~~~~~~~~r~ 33 (225)
T cd01882 11 ARQFQRTADIEEKKLHVPVVDRT 33 (225)
T ss_pred HHHHHHHHHhhhccccceeeccc
Confidence 46678899999999999999996
No 436
>TIGR00117 acnB aconitate hydratase 2. Aconitate hydratase (aconitase) is an enzyme of the TCA cycle. This model describes aconitase 2, AcnB, which has weak similarity to aconitase 1. It is found almost exclusively in the Proteobacteria.
Probab=25.88 E-value=3.4e+02 Score=28.43 Aligned_cols=100 Identities=17% Similarity=0.134 Sum_probs=55.3
Q ss_pred chHHHHHHhhcCCChhHHHHHHHHHHHhc-cCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHH
Q 014945 241 PALPALERLIHSNDDEVLTDACWALSYLS-DGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQ 319 (415)
Q Consensus 241 ~~l~~l~~lL~~~d~~v~~~a~~~l~~l~-~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~ 319 (415)
.....++++|+++...-....+..|.+=. .+-++ ..-++.+++..+..-=.....--...|...||.+..+..
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~pgvd~--aa~vka~fl~~i~~~~~~~~~i~~~~a~~~l~~m~gg~~---- 98 (844)
T TIGR00117 25 NQMAALVELLKNPPAGEEEFLLDLLTNRVPPGVDE--AAYVKAGFLAAIAKGEAKCPLISPEKAIELLGTMQGGYN---- 98 (844)
T ss_pred HHHHHHHHHhcCCCCccHHHHHHHHHhCCCCCCCh--HHHHHHHHHHHHHcCCCCCcccCHHHHHHHHhhccCCCC----
Confidence 33445666666553322233333443322 22222 223445555554444333333445667778887776643
Q ss_pred HHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHh
Q 014945 320 CIINHQALPCLLDLLTQNYKKSIKKEACWTISNIT 354 (415)
Q Consensus 320 ~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~ 354 (415)
++.|+.+|.+. +..+...|+.+|.+..
T Consensus 99 -------~~~l~~~~~~~-~~~~a~~a~~~l~~~~ 125 (844)
T TIGR00117 99 -------VHPLIDALDSQ-DANIAPIAAKALSHTL 125 (844)
T ss_pred -------HHHHHHHHhCC-CHHHHHHHHHHHhceE
Confidence 56788888777 7788888888887654
No 437
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=25.74 E-value=8.1e+02 Score=25.91 Aligned_cols=135 Identities=13% Similarity=0.142 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhcc----chhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHH
Q 014945 171 DDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE----HAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPAL 246 (415)
Q Consensus 171 ~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~----~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l 246 (415)
-...+.++..+-.++.+....-+. .++.+++.... ..++++...+...++.++..-. .........+|.|
T Consensus 481 ~~~tEaci~~~~sva~~~~~t~~~-----~i~rl~~~~asik~S~~n~ql~~Tss~~igs~s~~l~-e~P~~ln~sl~~L 554 (982)
T KOG2022|consen 481 LNRTEACIFQFQSVAEYLGETEST-----WIPRLFETSASIKLSAPNPQLLSTSSDLIGSLSNWLG-EHPMYLNPSLPLL 554 (982)
T ss_pred HHHHHHHHHHHHHHHhhcCcchhH-----HHHHHHHhccccccccCChhHHHHHHHHHHHHHHHHh-cCCcccCchHHHH
Confidence 345667777777777543322112 36666666522 2378888888888888886532 1223446788999
Q ss_pred HHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCC--ChhhHHHHHHHHHHhhcCC
Q 014945 247 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP--SPSVLIPALRTVGNIVTGD 314 (415)
Q Consensus 247 ~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~--~~~v~~~a~~~l~nl~~~~ 314 (415)
++-|+.+... ..+...+..+|....+..... -.+++...-..+... .+..+...++++|-+...-
T Consensus 555 ~~~Lh~sk~s--~q~i~tl~tlC~~C~~~L~py-~d~~~a~~~e~l~~~~~~~S~~~klm~sIGyvls~~ 621 (982)
T KOG2022|consen 555 FQGLHNSKES--EQAISTLKTLCETCPESLDPY-ADQFSAVCYEVLNKSNAKDSDRLKLMKSIGYVLSRL 621 (982)
T ss_pred HHHhcCchHH--HHHHHHHHHHHHhhhhhCchH-HHHHHHHHHHHhcccccCchHHHHHHHHHHHHHHhc
Confidence 9988754433 445555777776554432211 234555555555433 4567888899999887643
No 438
>KOG4337 consensus Microsomal triglyceride transfer protein [Lipid transport and metabolism; Intracellular trafficking, secretion, and vesicular transport]
Probab=25.49 E-value=7.2e+02 Score=25.23 Aligned_cols=52 Identities=10% Similarity=-0.068 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHH
Q 014945 256 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQ 317 (415)
Q Consensus 256 ~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~ 317 (415)
.++..|+.+|.++....... .-++.-|...+.+.....+.++..+....|..
T Consensus 548 t~rTlA~dIiL~~~P~~~~v----------~n~ll~l~~~dqE~~~Y~l~~i~ml~~~~p~~ 599 (896)
T KOG4337|consen 548 TTRTLAIDIILKCVPDHQNV----------ANLLLTLNPDDQEKWHYLLKAIEMLSGNKPEL 599 (896)
T ss_pred chhHHHHHHHHhcCccHHHH----------HHHHHHhCCChHHHHHHHHHHHHHHhccCchH
Confidence 36666666666554322221 22333455556666777777777766655543
No 439
>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=25.39 E-value=1.4e+02 Score=23.93 Aligned_cols=100 Identities=11% Similarity=0.089 Sum_probs=52.3
Q ss_pred CcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhc---CCCccchHHHHHHHHHHHhcCCHH
Q 014945 283 GVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLT---QNYKKSIKKEACWTISNITAGNVN 359 (415)
Q Consensus 283 ~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~---~~~~~~v~~~a~~~l~nl~~~~~~ 359 (415)
++++.+...+-.........-..+|+.++...+... . +....+..+++ .- ...+...-..++.-++..++.
T Consensus 55 ~Ile~l~~rI~~~s~~~~~~~idlL~~lv~~~p~~v---l--e~~~~l~~~ld~l~~l-p~~~a~~ll~Al~PLi~~s~~ 128 (158)
T PF14676_consen 55 EILEQLLNRIVTKSSSPSSQYIDLLSELVRKAPLTV---L--ECSSKLKELLDYLSFL-PGDVAIGLLRALLPLIKFSPS 128 (158)
T ss_dssp HHHHHHHHHHHH--SS--HHHHHHHHHHHHH-HHHH---S---S-HHHHGGGGGTTTS--HHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHHHHHhcCccchhHHHHHHHHHHHHChHHH---H--HHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCHH
Confidence 344444444422222212234678888887555221 1 22333444333 33 445566666677777766655
Q ss_pred HHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHH
Q 014945 360 QIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAIS 393 (415)
Q Consensus 360 ~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~ 393 (415)
-++. ++-.|-+.|-+.+.+.|..|...+.
T Consensus 129 lrd~-----lilvLRKamf~r~~~~R~~Av~Gfl 157 (158)
T PF14676_consen 129 LRDS-----LILVLRKAMFSRELDARQMAVNGFL 157 (158)
T ss_dssp HHHH-----HHHHHHHHTT-SSHHHHHHHHHHHH
T ss_pred HHHH-----HHHHHHHHHccccHHHHHHHHHHhc
Confidence 4444 4567777888889999998877653
No 440
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=24.50 E-value=4.1e+02 Score=23.00 Aligned_cols=83 Identities=19% Similarity=0.225 Sum_probs=50.2
Q ss_pred hchHHHHHHhhcCCChhHHHHHHHHHHHhcc----CCh--H---------------------HHHHHHH--cCcHHHHHH
Q 014945 240 RPALPALERLIHSNDDEVLTDACWALSYLSD----GTN--D---------------------KIQAVIE--AGVCPRLVE 290 (415)
Q Consensus 240 ~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~----~~~--~---------------------~~~~~~~--~~~i~~L~~ 290 (415)
..+-..++.++.+.++.++..++..+..+.. ... . ....+-. .+.++.|+.
T Consensus 42 ~~lK~~Il~~~~~~~~gvk~~~iKFle~vIl~qs~~~~~~~~~~~~~~d~SL~~vp~~Hp~l~~~~Le~Ea~~lL~~Ll~ 121 (239)
T PF11935_consen 42 NELKDRILSLWDSENPGVKLAAIKFLERVILVQSPGSSDSPPRRGSPNDFSLSSVPPNHPLLNPQQLEAEANGLLDRLLD 121 (239)
T ss_dssp HHHHHHHHHGGGSSSHHHHHHHHHHHHHHHHHTS---TTS---GGGTTS--GGGS-TT-SSS-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCCCCccccccccCCCHHHcCCCCCcCCHHHHHHHHHHHHHHHHH
Confidence 4444566666777777777777776655421 100 0 0011111 257788888
Q ss_pred hcCCCC--hhhHHHHHHHHHHhhcCChHHHHHHH
Q 014945 291 LLRHPS--PSVLIPALRTVGNIVTGDDMQTQCII 322 (415)
Q Consensus 291 lL~~~~--~~v~~~a~~~l~nl~~~~~~~~~~~~ 322 (415)
.+.++. ..+...++.+|+.|+...+.....++
T Consensus 122 ~l~~~~i~~~~~~a~insL~~Iak~RP~~~~~Il 155 (239)
T PF11935_consen 122 VLQSPHISSPLLTAIINSLSNIAKQRPQFMSRIL 155 (239)
T ss_dssp HHC-TT--HHHHHHHHHHHHHHHHHSGGGHHHHH
T ss_pred HHhhcccchHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 887664 67788888899999988776655443
No 441
>PF11502 BCL9: B-cell lymphoma 9 protein; InterPro: IPR024670 The Wnt pathway plays a role in embryonic development, stem cell growth and tumorigenesis. B-cell lymphoma 9 (BCL9) associates with beta-catenin and Tcf in the nucleus when the Wnt pathway is stimulated leading to the transactivation of Wnt target genes []. This entry represents a beta-catenin binding domain found in BCL9 and BCL9 homologues.; PDB: 3SL9_F 2GL7_C.
Probab=24.17 E-value=1.2e+02 Score=17.72 Aligned_cols=19 Identities=32% Similarity=0.569 Sum_probs=13.0
Q ss_pred hHHHHhHHHHHHHHHHHhh
Q 014945 23 EEGRRRREDNMVEIRKNKR 41 (415)
Q Consensus 23 ~~~r~~r~~~~~~lRk~~r 41 (415)
.|.|..|++....||+-.|
T Consensus 4 peQ~qHRE~qL~tlr~mq~ 22 (40)
T PF11502_consen 4 PEQRQHRERQLATLRDMQR 22 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4667778877777775544
No 442
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=24.09 E-value=2.7e+02 Score=19.85 Aligned_cols=58 Identities=16% Similarity=0.047 Sum_probs=40.1
Q ss_pred chhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCC--ChhHHHHHHHHHHHh
Q 014945 211 HAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSN--DDEVLTDACWALSYL 268 (415)
Q Consensus 211 ~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~--d~~v~~~a~~~l~~l 268 (415)
+++..+++.|+..+..++.............+...+.+.+.++ ......-|+..|..+
T Consensus 17 ~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~l 76 (92)
T PF07571_consen 17 DNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSAL 76 (92)
T ss_pred cchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 3467899999999999998754433334456667777777654 355677777777776
No 443
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=23.96 E-value=1.5e+02 Score=28.68 Aligned_cols=70 Identities=20% Similarity=0.229 Sum_probs=50.6
Q ss_pred HHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhc
Q 014945 285 CPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 355 (415)
Q Consensus 285 i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~ 355 (415)
...+-.+..+.++.++..+..++++++.+....+..+-+..+-..++.++..+ .+++-+.++.++.-+..
T Consensus 330 ~~~lk~~~a~~n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~~~-~~~~~~~~~~a~~~~~~ 399 (763)
T KOG4231|consen 330 LKALKSLCAHKNPELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIVTP-EPRVNKAAARALAILGE 399 (763)
T ss_pred HHHHHHHhcccChHHHHHHHHHHHHheecccccccccCChHHHHHHHHHhccc-ccccchhhhHHHHHhhh
Confidence 34444555678899999999999999987654333333445666788888888 88888888888776653
No 444
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=23.57 E-value=91 Score=24.50 Aligned_cols=29 Identities=21% Similarity=0.221 Sum_probs=0.0
Q ss_pred HcCCHHHHHHHhccCCHHHHHHHHHHHHH
Q 014945 366 EAGIIGPLVNLLLNAEFEIKKEAAWAISN 394 (415)
Q Consensus 366 ~~~~i~~L~~~l~~~~~~v~~~a~~aL~n 394 (415)
...+...+..+|.++++++|+.|+.||..
T Consensus 15 ~~~l~~~~~~LL~~~d~~vQklAL~cll~ 43 (141)
T PF07539_consen 15 SDELYDALLRLLSSRDPEVQKLALDCLLT 43 (141)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHH
No 445
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=23.52 E-value=8.5e+02 Score=25.36 Aligned_cols=176 Identities=16% Similarity=0.175 Sum_probs=97.3
Q ss_pred CCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHH
Q 014945 83 DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIF 162 (415)
Q Consensus 83 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L 162 (415)
.=+.++..++..+..++... ++.- ..++..++.-|.+++ ..+-..|...|.+|....|..+..++ .-+
T Consensus 316 ~L~~vk~raL~ti~~lL~~k-PEqE-----~~LL~~lVNKlGDpq-nKiaskAsylL~~L~~~HPnMK~Vvi-----~EI 383 (988)
T KOG2038|consen 316 PLEEVKKRALKTIYDLLTNK-PEQE-----NNLLVLLVNKLGDPQ-NKIASKASYLLEGLLAKHPNMKIVVI-----DEI 383 (988)
T ss_pred cHHHHHHHHHHHHHHHHhCC-cHHH-----HHHHHHHHHhcCCcc-hhhhhhHHHHHHHHHhhCCcceeehH-----HHH
Confidence 34678889999999998754 2222 234677888888888 78888899999998887787665443 344
Q ss_pred HHhhCCCC--HHHHHHHHHHHHHhcCCC--chhHHHHHhcCChHHHHHHh----ccc------------------hhHh-
Q 014945 163 VRLLSSPT--DDVREQAVWALGNVAGDS--PKCRDLVLSNGALMPLLAQF----NEH------------------AKLS- 215 (415)
Q Consensus 163 ~~ll~~~~--~~v~~~a~~~L~nl~~~~--~~~~~~~~~~g~i~~L~~~l----~~~------------------~~~~- 215 (415)
.+++-.++ ......|+.+|..+.-.. ......++. +.-.|...+ ... ...+
T Consensus 384 er~~FRpn~~~ra~Yyav~fLnQ~~Lshke~dvAnrLi~--iYF~lFk~l~~~~~~d~~k~~k~~~k~kks~k~~k~e~~ 461 (988)
T KOG2038|consen 384 ERLAFRPNVSERAHYYAVIFLNQMKLSHKESDVANRLIS--IYFSLFKTLVGKKDKDNRKDDKGAAKKKKSNKKDKKEEV 461 (988)
T ss_pred HHHHcccCccccceeehhhhhhhhHhccchHHHHHHHHH--HHHHHHHHHHHhhhhhhhhcccchhhcccccccchhhhh
Confidence 45544433 333445666666654222 222222222 111122211 000 0000
Q ss_pred ----HHHHHHHHHHHhhhCC----CC--CchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCC
Q 014945 216 ----MLRNATWTLSNFCRGK----PQ--PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGT 272 (415)
Q Consensus 216 ----~~~~a~~~l~~l~~~~----~~--~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~ 272 (415)
...--...|+.|..+. |- .....+..-++.|..+.++.+-.+-..|+..|..++...
T Consensus 462 ~~e~~~e~nsrllSAlLTGvNRAfPfaq~~ddk~~~~~~tLFkl~HssNFNTsVQaLmLlfQvs~~~ 528 (988)
T KOG2038|consen 462 STESPIELNSRLLSALLTGVNRAFPFAQTADDKLEEQMKTLFKLTHSSNFNTSVQALMLLFQVSKKN 528 (988)
T ss_pred cccchhhhhHHHHHHHHhcccccCCcccCchHHHHHHhHHHHHHHhhcccchhHHHHHHHHHHHHhh
Confidence 1111122344443332 21 122244566778888888888777778888887776443
No 446
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=23.42 E-value=3e+02 Score=31.11 Aligned_cols=129 Identities=12% Similarity=0.088 Sum_probs=64.9
Q ss_pred cchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHH
Q 014945 210 EHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLV 289 (415)
Q Consensus 210 ~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~ 289 (415)
.+.++.++..+......+..... ...-..++..|+..+-+.+..-...|+.+|..|+....+....+ +..+..++
T Consensus 445 ~S~e~~v~~FG~~~Y~~lF~~fd---s~~qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~~~~~l~~f--a~~l~giL 519 (1426)
T PF14631_consen 445 RSKEPSVREFGSHLYKYLFKEFD---SYCQQEVVGALVTHIGSGNSQEVDAALDVLCELAEKNPSELQPF--ATFLKGIL 519 (1426)
T ss_dssp TSSSHHHHHHHHHHHHHHHHSS----HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-HHHHHHT--HHHHHGGG
T ss_pred hCCCHHHHHHHHHHHHHHHhhcc---chhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhccHHHHHHH--HHHHHHHH
Confidence 34455666666666666655431 11235567777777655555445688888888886554433222 12333444
Q ss_pred HhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHH
Q 014945 290 ELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKE 345 (415)
Q Consensus 290 ~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~ 345 (415)
..+..=+..-......+++.++........ -+...+.-.+-+.|.++ ++..++.
T Consensus 520 D~l~~Ls~~qiR~lf~il~~La~~~~~~~s-~i~del~ivIRKQLss~-~~~~K~~ 573 (1426)
T PF14631_consen 520 DYLDNLSLQQIRKLFDILCTLAFSDSSSSS-SIQDELHIVIRKQLSSS-NPKYKRI 573 (1426)
T ss_dssp GGGGG--HHHHHHHHHHHHHHHHHHSS----HHHHHHHHHHHHHHT-S-SHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHHhcCCcccch-hhHHHHHHHHHHhhcCC-cHHHHHH
Confidence 444433444445567777777753321111 12223334455677777 6666653
No 447
>PF08620 RPAP1_C: RPAP1-like, C-terminal; InterPro: IPR013929 Inhibition of RNA polymerase II-associated protein 1 (RPAP1) synthesis in Saccharomyces cerevisiae (Baker's yeast) results in changes in global gene expression that are similar to those caused by the loss of the RNAPII subunit Rpb11 []. This entry represents the C-terminal region that contains the motif GLHHH. This region is conserved from yeast to humans.
Probab=22.47 E-value=1.9e+02 Score=19.79 Aligned_cols=29 Identities=10% Similarity=0.037 Sum_probs=26.5
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhc
Q 014945 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLS 100 (415)
Q Consensus 72 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~ 100 (415)
++++++.+..|..+..+..|+..|.+++.
T Consensus 40 Ti~El~~L~RSsv~~QR~~al~~L~~Il~ 68 (73)
T PF08620_consen 40 TIQELFHLSRSSVPSQRCIALQTLGRILY 68 (73)
T ss_pred CHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999998864
No 448
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=22.29 E-value=5.2e+02 Score=22.39 Aligned_cols=81 Identities=17% Similarity=0.226 Sum_probs=48.8
Q ss_pred CcHHHHHHhcCCCChhhHHHHHHHHHHhhcC----Ch--H---------------------HHHHHH--HCCChHHHHHH
Q 014945 283 GVCPRLVELLRHPSPSVLIPALRTVGNIVTG----DD--M---------------------QTQCII--NHQALPCLLDL 333 (415)
Q Consensus 283 ~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~----~~--~---------------------~~~~~~--~~~~l~~L~~l 333 (415)
.+-..++..+.+.++.++..++..+..++.. .. . ....+- ..+++..|+.+
T Consensus 43 ~lK~~Il~~~~~~~~gvk~~~iKFle~vIl~qs~~~~~~~~~~~~~~d~SL~~vp~~Hp~l~~~~Le~Ea~~lL~~Ll~~ 122 (239)
T PF11935_consen 43 ELKDRILSLWDSENPGVKLAAIKFLERVILVQSPGSSDSPPRRGSPNDFSLSSVPPNHPLLNPQQLEAEANGLLDRLLDV 122 (239)
T ss_dssp HHHHHHHHGGGSSSHHHHHHHHHHHHHHHHHTS---TTS---GGGTTS--GGGS-TT-SSS-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCCCCccccccccCCCHHHcCCCCCcCCHHHHHHHHHHHHHHHHHH
Confidence 3445677777778888888888887766520 00 0 001111 12678888898
Q ss_pred hcCCC-ccchHHHHHHHHHHHhcCCHHHHHH
Q 014945 334 LTQNY-KKSIKKEACWTISNITAGNVNQIQA 363 (415)
Q Consensus 334 l~~~~-~~~v~~~a~~~l~nl~~~~~~~~~~ 363 (415)
+.++. ++.+-..+..+|++|+..-|.....
T Consensus 123 l~~~~i~~~~~~a~insL~~Iak~RP~~~~~ 153 (239)
T PF11935_consen 123 LQSPHISSPLLTAIINSLSNIAKQRPQFMSR 153 (239)
T ss_dssp HC-TT--HHHHHHHHHHHHHHHHHSGGGHHH
T ss_pred HhhcccchHHHHHHHHHHHHHHHHhhHHHHH
Confidence 88873 3566677778888888755544433
No 449
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=22.05 E-value=4.4e+02 Score=21.53 Aligned_cols=112 Identities=7% Similarity=0.025 Sum_probs=57.7
Q ss_pred CcHHHHHHhcCCCChhhHHHHHHHHHHhh-cCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhc-----C
Q 014945 283 GVCPRLVELLRHPSPSVLIPALRTVGNIV-TGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA-----G 356 (415)
Q Consensus 283 ~~i~~L~~lL~~~~~~v~~~a~~~l~nl~-~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~-----~ 356 (415)
|.-+-|.+.+.+....-...|..++..+. .-.++....+++ .+++.+.+.|.++.+.++.....-..+.++. .
T Consensus 42 ~~W~eL~d~Ils~~~~e~~kA~~IF~~L~~~l~~efl~~~~~-~L~~~~~~~L~~p~~~d~~~W~LAl~~a~~~~Iql~e 120 (174)
T PF04510_consen 42 GGWDELSDCILSLSENEPVKAFHIFICLPMPLYGEFLIPFME-NLLPEISKVLLPPEEVDVEDWVLALTGAVCMAIQLLE 120 (174)
T ss_pred CCchhHHHHHHHhhccchHHHHHHHHhCCchhhhhHHHHHHH-HHHHHHHHHcCCchhccHHHHHHHHHHHHHHHHHHhc
Confidence 33444444443322333466777777776 333445555555 4888888888877444443222222122221 1
Q ss_pred CH---HHHHHHHHcCCHHHHHHHhccCCH-HHHHHHHHHHHHHh
Q 014945 357 NV---NQIQAIIEAGIIGPLVNLLLNAEF-EIKKEAAWAISNAT 396 (415)
Q Consensus 357 ~~---~~~~~l~~~~~i~~L~~~l~~~~~-~v~~~a~~aL~nl~ 396 (415)
++ +..+.++.. .+..+.+++..+.. .....|..-+..+.
T Consensus 121 ~~~~~~~vk~L~~~-mv~Sv~elV~~g~E~~~l~rgl~~~e~~v 163 (174)
T PF04510_consen 121 SSMRVDLVKELLPK-MVKSVKELVERGMEVGFLRRGLRDFESFV 163 (174)
T ss_pred cccHHHHHHHHHHH-HHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 22 223333333 55566666666665 66666766666655
No 450
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=21.31 E-value=4.6e+02 Score=21.39 Aligned_cols=77 Identities=13% Similarity=0.075 Sum_probs=52.2
Q ss_pred hhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHh
Q 014945 212 AKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL 291 (415)
Q Consensus 212 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~l 291 (415)
.-.+++..|..++..+...-... .....+++.+...|.+ +.+|+.-+...+..++...+.....-+ ..+++.+-..
T Consensus 39 DGLelRK~ayE~lytlLd~~~~~--~~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~~v~~~L-d~l~~~l~~~ 114 (169)
T PF08623_consen 39 DGLELRKAAYECLYTLLDTCLSR--IDISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPEEVLQRL-DSLVEPLRKT 114 (169)
T ss_dssp GGGHHHHHHHHHHHHHHHSTCSS--S-HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HHHHHHCC-TTTHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHh--CCHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHHHHHHHH-HHHHHHHHHH
Confidence 34678999999999987753211 1245668888888877 899999999999999887775433222 2455666665
Q ss_pred c
Q 014945 292 L 292 (415)
Q Consensus 292 L 292 (415)
|
T Consensus 115 L 115 (169)
T PF08623_consen 115 L 115 (169)
T ss_dssp H
T ss_pred h
Confidence 5
No 451
>KOG1877 consensus Putative transmembrane protein cmp44E [General function prediction only]
Probab=21.13 E-value=1.5e+02 Score=30.77 Aligned_cols=109 Identities=12% Similarity=0.100 Sum_probs=64.2
Q ss_pred HHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHH
Q 014945 265 LSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKK 344 (415)
Q Consensus 265 l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~ 344 (415)
|++.+...+.+...+- .-...+...=|.+....-..-|+.++-.|...+.++.. ++..+++..+..+|.+. .+..+.
T Consensus 39 L~~YAasnp~KL~KI~-~yL~~R~~kdl~~~r~~~v~Iamea~~kLL~~C~eq~n-~F~ssfL~mv~~LLes~-~~~~~i 115 (819)
T KOG1877|consen 39 LTFYAASNPSKLPKIG-TYLEERCYKDLRRERFGSVKIAMEAYDKLLQACKEQIN-LFVSSFLRMVQKLLESN-NDEMQI 115 (819)
T ss_pred HHHHHhhChhhhhHHH-HHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHhhhhH-HHHHHHHHHHHHHHhcC-CCceee
Confidence 3333334444444322 22345555555555544455566666666665566664 55668999999999998 888887
Q ss_pred HHHHHHHHHh---cCCHHHHHHHHH-cCCHHHHHHHhcc
Q 014945 345 EACWTISNIT---AGNVNQIQAIIE-AGIIGPLVNLLLN 379 (415)
Q Consensus 345 ~a~~~l~nl~---~~~~~~~~~l~~-~~~i~~L~~~l~~ 379 (415)
.++.++..++ ...+. +... .++++.+..+..+
T Consensus 116 lg~~sf~~F~~i~~d~~s---y~~~yd~Fi~kf~~l~he 151 (819)
T KOG1877|consen 116 LGTNSFVKFANIEEDGPS---YHRNYDFFISKFSSLCHE 151 (819)
T ss_pred ehhhHHHHHHhhcccCch---hhhhhHHHHHHHHHHhhc
Confidence 7777766665 33322 2222 3356677776665
No 452
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=20.49 E-value=9.4e+02 Score=27.04 Aligned_cols=115 Identities=13% Similarity=0.049 Sum_probs=66.3
Q ss_pred hhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHH
Q 014945 239 TRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQT 318 (415)
Q Consensus 239 ~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~ 318 (415)
...-+..+++-|.-.|+..+..|+.-++.+....+......+-.-......++..+.+..||...-.++..+.+.-....
T Consensus 39 ~dsel~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~l 118 (1312)
T KOG0803|consen 39 LDSELDIIVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKL 118 (1312)
T ss_pred cCHHHHHHHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455667777777899999999999999986554322211111122334455568889999999999999887544332
Q ss_pred HHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhc
Q 014945 319 QCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 355 (415)
Q Consensus 319 ~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~ 355 (415)
...+. .+++...-...+. +..|...|-..+.....
T Consensus 119 sp~LK-~li~~wl~~~~d~-~~~vs~aa~~sf~~~f~ 153 (1312)
T KOG0803|consen 119 SPFLK-SLIPPWLGGQFDL-DYPVSEAAKASFKDGFA 153 (1312)
T ss_pred hHHHH-hhhhhhhheeccc-chHHHHHHHHHHHhhcC
Confidence 22222 2233333333333 44444444444444443
Done!