Query 014945
Match_columns 415
No_of_seqs 345 out of 2072
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 03:56:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014945.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014945hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tpo_A Importin subunit alpha- 100.0 3.7E-62 1.3E-66 475.3 37.0 411 1-415 1-421 (529)
2 4b8j_A Importin subunit alpha- 100.0 1.8E-56 6.2E-61 436.6 38.3 412 1-415 3-415 (528)
3 1wa5_B Importin alpha subunit; 100.0 2.2E-52 7.5E-57 407.7 31.0 403 8-415 13-429 (530)
4 3ul1_B Importin subunit alpha- 100.0 1.5E-50 5.3E-55 391.4 37.7 381 31-415 16-402 (510)
5 2jdq_A Importin alpha-1 subuni 100.0 1.1E-39 3.7E-44 312.0 39.1 339 73-415 22-362 (450)
6 3tpo_A Importin subunit alpha- 100.0 3.2E-39 1.1E-43 314.0 33.1 323 71-397 119-449 (529)
7 3ul1_B Importin subunit alpha- 100.0 2E-39 7E-44 313.6 31.4 323 71-397 100-430 (510)
8 3now_A UNC-45 protein, SD10334 100.0 5.6E-40 1.9E-44 324.3 27.9 332 73-415 379-751 (810)
9 3nmz_A APC variant protein; pr 100.0 3.4E-39 1.2E-43 302.5 27.3 335 69-415 30-422 (458)
10 3nmz_A APC variant protein; pr 100.0 1.4E-37 4.6E-42 291.7 27.7 326 70-399 69-452 (458)
11 2jdq_A Importin alpha-1 subuni 100.0 1.7E-36 5.8E-41 289.8 30.1 325 71-400 64-393 (450)
12 4b8j_A Importin subunit alpha- 100.0 2.7E-36 9.4E-41 294.1 31.6 324 71-399 117-445 (528)
13 1wa5_B Importin alpha subunit; 100.0 3.9E-36 1.3E-40 293.0 32.4 326 71-400 130-460 (530)
14 1xm9_A Plakophilin 1; armadill 100.0 3.5E-36 1.2E-40 286.6 27.3 320 72-399 3-451 (457)
15 3now_A UNC-45 protein, SD10334 100.0 3.5E-36 1.2E-40 297.4 24.4 326 70-399 420-784 (810)
16 3l6x_A Catenin delta-1; cateni 100.0 7.5E-34 2.6E-38 272.0 32.5 325 70-398 89-477 (584)
17 3l6x_A Catenin delta-1; cateni 100.0 3.9E-35 1.3E-39 280.9 23.3 333 71-414 48-445 (584)
18 1jdh_A Beta-catenin; beta-cate 100.0 9.7E-33 3.3E-37 269.2 29.0 327 71-404 101-435 (529)
19 3nmw_A APC variant protein; AR 100.0 3.1E-33 1E-37 254.9 23.2 271 129-402 46-339 (354)
20 1xm9_A Plakophilin 1; armadill 100.0 3.4E-33 1.1E-37 266.1 22.8 281 115-398 3-361 (457)
21 2z6h_A Catenin beta-1, beta-ca 100.0 3.4E-32 1.2E-36 270.9 30.1 327 71-404 98-432 (644)
22 3nmw_A APC variant protein; AR 100.0 5.6E-33 1.9E-37 253.2 19.7 273 85-360 46-339 (354)
23 1jdh_A Beta-catenin; beta-cate 100.0 3.2E-31 1.1E-35 258.4 26.7 322 71-398 59-386 (529)
24 2z6g_A B-catenin; FULL-length, 100.0 2.9E-30 1E-34 261.0 30.2 317 71-394 234-556 (780)
25 4hxt_A De novo protein OR329; 100.0 5.8E-30 2E-34 225.0 27.1 243 114-400 2-244 (252)
26 2z6h_A Catenin beta-1, beta-ca 100.0 3.3E-30 1.1E-34 256.6 27.8 322 71-398 56-383 (644)
27 2z6g_A B-catenin; FULL-length, 100.0 1.1E-29 3.8E-34 256.8 27.5 322 71-398 192-519 (780)
28 4db8_A Armadillo-repeat protei 100.0 1E-29 3.4E-34 223.6 21.5 239 114-355 12-251 (252)
29 4db8_A Armadillo-repeat protei 100.0 3.8E-29 1.3E-33 219.9 20.7 239 157-397 12-251 (252)
30 4hxt_A De novo protein OR329; 100.0 2E-28 7E-33 215.1 24.3 242 71-315 2-244 (252)
31 3opb_A SWI5-dependent HO expre 99.9 1.2E-25 4.3E-30 218.1 22.0 320 73-397 336-728 (778)
32 4db6_A Armadillo repeat protei 99.9 6.1E-25 2.1E-29 187.4 22.1 199 197-397 10-209 (210)
33 4db6_A Armadillo repeat protei 99.9 1E-24 3.4E-29 186.1 21.5 199 112-312 10-209 (210)
34 1xqr_A HSPBP1 protein; armadil 99.9 6.1E-24 2.1E-28 188.5 21.7 188 129-317 54-243 (296)
35 1xqr_A HSPBP1 protein; armadil 99.9 1.2E-23 4.1E-28 186.6 17.0 188 212-400 52-241 (296)
36 3tt9_A Plakophilin-2; cell adh 99.9 1.8E-22 6.1E-27 171.4 16.0 197 115-313 9-230 (233)
37 3opb_A SWI5-dependent HO expre 99.9 2.8E-21 9.5E-26 187.8 24.6 315 72-398 297-684 (778)
38 3tt9_A Plakophilin-2; cell adh 99.9 1.4E-21 4.7E-26 165.9 13.2 197 71-271 8-230 (233)
39 4fdd_A Transportin-1; heat rep 99.8 1E-19 3.6E-24 187.0 10.8 319 72-401 129-475 (852)
40 3grl_A General vesicular trans 99.8 1.5E-15 5.2E-20 144.0 31.1 327 71-398 60-450 (651)
41 3grl_A General vesicular trans 99.8 6.4E-16 2.2E-20 146.6 28.4 325 71-401 21-398 (651)
42 1oyz_A Hypothetical protein YI 99.8 1.9E-16 6.6E-21 140.9 22.4 230 112-397 21-250 (280)
43 1oyz_A Hypothetical protein YI 99.7 3.6E-16 1.2E-20 139.1 23.7 255 71-394 23-279 (280)
44 4fdd_A Transportin-1; heat rep 99.7 7.2E-17 2.4E-21 165.9 19.3 309 74-398 93-430 (852)
45 1b3u_A Protein (protein phosph 99.7 1.5E-15 5E-20 149.6 19.0 309 73-402 244-553 (588)
46 1b3u_A Protein (protein phosph 99.7 2.2E-15 7.4E-20 148.4 19.8 304 72-396 282-586 (588)
47 2vgl_B AP-2 complex subunit be 99.7 2E-15 6.8E-20 148.3 16.7 224 72-314 87-313 (591)
48 1ibr_B P95, importin beta-1 su 99.6 2.9E-15 1E-19 142.9 13.2 310 74-398 93-438 (462)
49 1qgr_A Protein (importin beta 99.6 3E-14 1E-18 147.0 20.9 317 72-398 129-480 (876)
50 2vgl_B AP-2 complex subunit be 99.6 3.3E-14 1.1E-18 139.7 20.1 296 71-397 13-311 (591)
51 3ltm_A Alpha-REP4; protein eng 99.6 5.9E-14 2E-18 119.2 18.4 189 156-400 18-206 (211)
52 3ltj_A Alpharep-4; protein eng 99.6 1.2E-13 4E-18 116.3 20.1 185 157-397 14-198 (201)
53 1w63_A Adapter-related protein 99.6 1.6E-13 5.3E-18 135.4 24.1 293 72-398 71-415 (618)
54 2bpt_A Importin beta-1 subunit 99.6 1.4E-14 4.9E-19 149.0 14.5 324 74-407 372-721 (861)
55 3ltm_A Alpha-REP4; protein eng 99.6 1.5E-13 5.1E-18 116.6 18.3 187 113-356 18-204 (211)
56 2bpt_A Importin beta-1 subunit 99.6 8.9E-14 3.1E-18 143.1 19.8 318 73-401 181-533 (861)
57 1ibr_B P95, importin beta-1 su 99.6 8.7E-14 3E-18 132.7 17.3 278 71-356 128-438 (462)
58 3ltj_A Alpharep-4; protein eng 99.6 3E-13 1E-17 113.8 18.4 185 113-354 13-197 (201)
59 1qgr_A Protein (importin beta 99.5 3E-13 1E-17 139.4 19.3 317 73-400 174-540 (876)
60 1w63_A Adapter-related protein 99.5 5.2E-12 1.8E-16 124.5 27.1 301 74-407 37-390 (618)
61 1u6g_C TIP120 protein, CAND1; 99.5 9.1E-13 3.1E-17 140.6 18.3 315 72-400 7-365 (1230)
62 2vgl_A Adaptor protein complex 99.4 2.5E-10 8.6E-15 112.2 31.0 294 71-397 74-433 (621)
63 1u6g_C TIP120 protein, CAND1; 99.4 9E-12 3.1E-16 133.0 17.6 318 72-399 87-465 (1230)
64 2db0_A 253AA long hypothetical 99.3 6.5E-10 2.2E-14 87.1 19.9 216 156-397 31-246 (253)
65 4gmo_A Putative uncharacterize 99.3 2.4E-10 8.2E-15 113.8 19.3 213 117-354 37-257 (684)
66 4ady_A RPN2, 26S proteasome re 99.2 8.4E-10 2.9E-14 110.0 21.8 273 72-400 393-679 (963)
67 2vgl_A Adaptor protein complex 99.1 2.4E-09 8.1E-14 105.3 19.4 258 74-355 149-433 (621)
68 3tjz_B Coatomer subunit gamma; 99.1 7.7E-09 2.6E-13 93.0 20.5 276 72-392 69-348 (355)
69 4gmo_A Putative uncharacterize 99.1 5.9E-10 2E-14 111.0 12.8 195 200-396 35-257 (684)
70 2qk2_A LP04448P; mini spindles 99.0 4.4E-09 1.5E-13 90.9 13.2 192 202-404 18-212 (242)
71 4ady_A RPN2, 26S proteasome re 99.0 1.3E-07 4.5E-12 94.5 24.5 273 73-398 431-720 (963)
72 2db0_A 253AA long hypothetical 98.9 5.9E-07 2E-11 70.6 21.5 216 112-355 30-246 (253)
73 3b2a_A TON_1937, putative unch 98.9 4.6E-08 1.6E-12 80.2 14.4 188 114-314 33-220 (265)
74 2qk2_A LP04448P; mini spindles 98.9 2.8E-08 9.6E-13 85.8 14.0 185 74-270 18-205 (242)
75 3b2a_A TON_1937, putative unch 98.9 1.7E-07 5.6E-12 77.0 16.5 188 71-272 33-220 (265)
76 1te4_A Conserved protein MTH18 98.8 4E-10 1.4E-14 87.4 0.2 121 240-395 11-131 (131)
77 2qk1_A Protein STU2; STU2P, XM 98.8 4E-08 1.4E-12 84.9 11.8 191 118-312 20-220 (249)
78 3tjz_B Coatomer subunit gamma; 98.8 1.1E-07 3.8E-12 85.5 15.0 242 72-350 105-348 (355)
79 2iw3_A Elongation factor 3A; a 98.8 1.1E-06 3.8E-11 88.9 23.8 303 71-396 14-323 (986)
80 2qk1_A Protein STU2; STU2P, XM 98.8 2.7E-08 9.2E-13 86.0 10.3 190 204-397 21-220 (249)
81 1ho8_A Vacuolar ATP synthase s 98.7 1.1E-05 3.7E-10 74.4 24.8 319 72-396 78-475 (480)
82 4hat_C Exportin-1; heat repeat 98.7 8.9E-06 3E-10 84.2 26.8 300 82-401 206-573 (1023)
83 1te4_A Conserved protein MTH18 98.7 5.5E-09 1.9E-13 80.9 2.3 121 113-268 11-131 (131)
84 1ho8_A Vacuolar ATP synthase s 98.6 5.2E-06 1.8E-10 76.4 19.3 235 118-355 171-476 (480)
85 3m1i_C Exportin-1; heat repeat 98.4 0.00023 7.7E-09 74.7 27.8 301 83-402 207-574 (1049)
86 1wa5_C Importin alpha RE-expor 98.3 9.4E-05 3.2E-09 76.8 24.1 256 130-396 376-669 (960)
87 1wa5_C Importin alpha RE-expor 98.3 0.0001 3.5E-09 76.6 22.0 305 82-396 416-790 (960)
88 2x1g_F Cadmus; transport prote 98.2 4.5E-05 1.5E-09 79.4 19.3 303 83-399 256-617 (971)
89 3dad_A FH1/FH2 domain-containi 98.2 5.9E-05 2E-09 66.1 14.9 158 72-232 119-289 (339)
90 2x1g_F Cadmus; transport prote 98.1 0.00019 6.5E-09 74.7 21.3 250 131-397 437-722 (971)
91 2x19_B Importin-13; nuclear tr 98.1 0.00014 4.8E-09 75.6 19.3 314 74-407 244-610 (963)
92 3gjx_A Exportin-1; transport, 98.1 0.0029 9.9E-08 65.5 27.9 297 82-401 218-599 (1073)
93 3ibv_A Exportin-T; karyopherin 98.0 2.8E-05 9.7E-10 80.3 12.1 303 82-400 204-569 (980)
94 2iw3_A Elongation factor 3A; a 98.0 0.0025 8.7E-08 64.8 25.7 261 72-354 55-323 (986)
95 3dad_A FH1/FH2 domain-containi 98.0 5.6E-05 1.9E-09 66.2 11.8 155 244-400 121-289 (339)
96 3oc3_A Helicase MOT1, MOT1; re 97.9 8.9E-05 3E-09 68.9 11.9 259 68-393 171-432 (800)
97 4hat_C Exportin-1; heat repeat 97.9 0.003 1E-07 65.4 23.9 157 241-401 451-622 (1023)
98 4ffb_C Protein STU2; tubulin f 97.9 0.00058 2E-08 59.8 16.1 191 72-271 11-213 (278)
99 3m1i_C Exportin-1; heat repeat 97.8 0.0024 8.1E-08 67.0 22.6 235 157-400 344-621 (1049)
100 2x19_B Importin-13; nuclear tr 97.6 0.0018 6.3E-08 67.2 17.6 220 167-397 459-714 (963)
101 4ffb_C Protein STU2; tubulin f 97.6 0.00085 2.9E-08 58.7 12.8 186 204-398 14-213 (278)
102 2of3_A ZYG-9; multifunctional 97.5 0.0016 5.4E-08 55.8 12.7 176 162-355 51-236 (266)
103 1lrv_A LRV, leucine-rich repea 97.5 6.6E-05 2.3E-09 63.9 3.8 185 79-393 58-242 (244)
104 1upk_A MO25 protein; transfera 97.5 0.012 4.1E-07 51.6 17.7 241 153-396 74-331 (341)
105 2of3_A ZYG-9; multifunctional 97.3 0.0056 1.9E-07 52.4 13.9 178 74-269 49-235 (266)
106 1upk_A MO25 protein; transfera 97.2 0.059 2E-06 47.3 19.2 202 193-399 72-285 (341)
107 3l9t_A Putative uncharacterize 96.9 0.026 8.7E-07 46.9 13.5 145 115-281 72-218 (240)
108 3ibv_A Exportin-T; karyopherin 96.9 0.013 4.4E-07 60.7 14.1 254 129-396 457-767 (980)
109 3gjx_A Exportin-1; transport, 96.8 0.19 6.5E-06 52.2 21.8 222 70-313 27-276 (1073)
110 1lrv_A LRV, leucine-rich repea 96.7 0.0008 2.7E-08 57.2 2.9 165 75-351 78-242 (244)
111 2fv2_A RCD1 required for cell 96.6 0.054 1.9E-06 45.4 13.3 151 254-407 14-182 (268)
112 3l9t_A Putative uncharacterize 96.5 0.056 1.9E-06 44.9 12.9 140 240-407 70-216 (240)
113 3a6p_A Exportin-5; exportin-5, 96.5 0.8 2.7E-05 48.6 25.1 300 72-398 12-381 (1204)
114 2fv2_A RCD1 required for cell 96.5 0.077 2.6E-06 44.5 13.3 137 259-398 74-225 (268)
115 3u0r_A Apoptosis inhibitor 5; 96.5 0.21 7.2E-06 46.0 17.2 124 168-311 39-162 (507)
116 3u0r_A Apoptosis inhibitor 5; 96.4 0.54 1.9E-05 43.3 19.4 245 129-400 42-301 (507)
117 3oc3_A Helicase MOT1, MOT1; re 96.3 0.034 1.2E-06 52.2 11.1 187 86-307 243-431 (800)
118 3ebb_A Phospholipase A2-activa 95.9 0.43 1.5E-05 41.8 16.0 173 116-294 105-287 (304)
119 1lsh_A Lipovitellin (LV-1N, LV 95.8 1.9 6.5E-05 45.0 22.9 172 201-401 393-580 (1056)
120 2f31_A Diaphanous protein homo 95.6 0.52 1.8E-05 39.6 15.1 139 91-231 21-182 (233)
121 3eg5_B Protein diaphanous homo 95.5 0.8 2.7E-05 41.6 16.8 156 75-232 70-249 (383)
122 3c2g_A SYS-1 protein; beta-cat 95.1 0.26 8.8E-06 43.3 11.3 129 265-396 266-402 (619)
123 3ebb_A Phospholipase A2-activa 95.0 0.22 7.6E-06 43.6 11.1 110 118-230 151-264 (304)
124 1lsh_A Lipovitellin (LV-1N, LV 94.9 1.9 6.5E-05 45.0 19.5 167 158-357 392-578 (1056)
125 3c2g_A SYS-1 protein; beta-cat 94.7 0.62 2.1E-05 40.9 12.6 114 177-293 263-377 (619)
126 2p8q_B Snurportin-1; heat repe 94.6 0.028 9.4E-07 31.8 2.6 38 11-50 2-40 (40)
127 3gs3_A Symplekin, LD45768P; he 94.4 2 7E-05 36.4 22.1 101 73-184 17-117 (257)
128 2bnx_A Diaphanous protein homo 94.2 3 0.0001 37.8 16.9 140 91-232 25-187 (386)
129 3eg5_B Protein diaphanous homo 93.9 3.6 0.00012 37.3 16.8 145 147-294 100-275 (383)
130 3a6p_A Exportin-5; exportin-5, 93.8 1.8 6.2E-05 45.9 16.7 244 129-396 27-330 (1204)
131 3o2t_A Symplekin; heat repeat, 93.6 3.9 0.00013 36.9 22.5 88 86-184 40-127 (386)
132 2f31_A Diaphanous protein homo 93.2 3.3 0.00011 34.6 17.0 165 147-343 34-216 (233)
133 3qml_C Protein SLS1, nucleotid 92.5 2 7E-05 37.0 11.9 137 254-396 41-188 (315)
134 3fga_B Serine/threonine-protei 90.4 10 0.00035 34.4 17.7 231 152-398 124-367 (403)
135 2npp_B PP2A, B subunit, serine 89.3 8.7 0.0003 35.4 13.7 226 73-317 164-404 (449)
136 2bnx_A Diaphanous protein homo 88.9 13 0.00045 33.6 17.8 165 147-343 38-220 (386)
137 3fga_B Serine/threonine-protei 88.3 8.3 0.00028 34.9 12.7 224 73-315 131-369 (403)
138 2npp_B PP2A, B subunit, serine 85.4 23 0.00077 32.7 17.4 235 150-398 155-400 (449)
139 1x5b_A Signal transducing adap 83.2 2.2 7.4E-05 33.4 5.6 74 71-144 52-125 (163)
140 1mhq_A ADP-ribosylation factor 82.6 2.7 9.1E-05 32.3 5.8 74 71-144 38-116 (148)
141 3ldz_A STAM-1, signal transduc 82.3 1.7 6E-05 33.0 4.6 72 71-143 42-113 (140)
142 3g2s_A C-terminal fragment of 80.8 3.3 0.00011 31.7 5.7 73 71-144 48-126 (149)
143 2b6c_A Hypothetical protein EF 80.3 23 0.00078 29.0 11.7 127 246-398 60-189 (220)
144 3qml_C Protein SLS1, nucleotid 78.9 18 0.00061 31.3 10.1 148 72-229 23-189 (315)
145 2b6c_A Hypothetical protein EF 78.9 22 0.00075 29.2 10.7 134 210-366 65-199 (220)
146 2jak_A Serine/threonine-protei 77.3 26 0.00089 31.6 11.2 191 152-350 169-362 (392)
147 3o2t_A Symplekin; heat repeat, 77.2 41 0.0014 30.3 14.3 122 238-396 60-182 (386)
148 1juq_A ADP-ribosylation factor 76.2 3.9 0.00013 32.2 5.0 74 71-144 50-128 (171)
149 3zyq_A Hepatocyte growth facto 75.9 2.6 9E-05 35.0 4.2 74 71-144 45-118 (226)
150 1vsy_5 Proteasome activator BL 74.3 7.6 0.00026 40.1 7.8 187 158-355 134-365 (997)
151 1dvp_A HRS, hepatocyte growth 71.5 3.7 0.00012 34.0 4.0 73 71-143 42-114 (220)
152 1x5b_A Signal transducing adap 70.8 9 0.00031 29.8 5.9 73 158-230 53-126 (163)
153 3zyq_A Hepatocyte growth facto 70.1 14 0.00049 30.5 7.3 74 158-231 46-120 (226)
154 2jak_A Serine/threonine-protei 68.1 13 0.00046 33.4 7.1 72 73-146 176-247 (392)
155 1vsy_5 Proteasome activator BL 67.8 1.2E+02 0.004 31.4 16.1 182 201-397 135-365 (997)
156 3ldz_A STAM-1, signal transduc 67.5 25 0.00085 26.4 7.6 95 292-396 18-113 (140)
157 3pst_A Protein DOA1; protein d 66.0 18 0.0006 33.0 7.4 131 132-273 243-392 (425)
158 3jxy_A Alkylpurine DNA glycosy 65.8 52 0.0018 27.1 10.0 77 284-368 132-208 (232)
159 3gae_A Protein DOA1; UFD3, CDC 65.8 26 0.0009 29.4 8.2 107 166-272 99-219 (253)
160 1mhq_A ADP-ribosylation factor 65.4 20 0.00067 27.4 6.7 74 240-313 37-117 (148)
161 3pst_A Protein DOA1; protein d 62.9 13 0.00044 33.9 6.0 104 292-398 271-390 (425)
162 3g2s_A C-terminal fragment of 62.7 23 0.00078 27.0 6.6 73 240-312 47-126 (149)
163 3l3f_X Protein DOA1, DOA1/UFD3 61.7 16 0.00054 32.6 6.3 131 132-273 180-329 (362)
164 1juq_A ADP-ribosylation factor 61.6 47 0.0016 25.9 8.4 95 293-397 27-128 (171)
165 1dvp_A HRS, hepatocyte growth 61.1 30 0.001 28.4 7.6 73 158-230 43-116 (220)
166 3gae_A Protein DOA1; UFD3, CDC 60.2 8 0.00027 32.7 4.0 101 294-397 101-217 (253)
167 3l3f_X Protein DOA1, DOA1/UFD3 59.5 12 0.00042 33.3 5.1 104 292-398 208-327 (362)
168 1elk_A Target of MYB1; superhe 56.7 20 0.00068 27.6 5.4 74 71-144 53-130 (157)
169 1vdy_A Hypothetical protein (R 52.9 27 0.00094 26.2 5.4 39 369-407 50-88 (140)
170 3gjx_B Snurportin-1; transport 48.7 3.2 0.00011 36.5 -0.4 43 8-52 28-71 (365)
171 1vsy_4 Proteasome activator BL 42.3 1.4E+02 0.0048 29.9 10.1 118 150-269 333-454 (799)
172 3gs3_A Symplekin, LD45768P; he 40.3 1.6E+02 0.0056 24.6 18.0 69 238-311 50-118 (257)
173 4atg_A TAF6; transcription, TF 38.4 1.5E+02 0.0052 23.7 10.9 128 200-335 41-178 (196)
174 1sz9_A PCF11 protein; RNA poly 35.9 80 0.0027 23.8 5.7 70 326-396 44-113 (144)
175 1t06_A Hypothetical protein; s 35.4 56 0.0019 27.0 5.3 76 285-366 110-191 (235)
176 4atg_A TAF6; transcription, TF 35.3 1.2E+02 0.0039 24.3 6.8 111 158-269 41-161 (196)
177 1a92_A Delta antigen; leucine 32.9 42 0.0014 19.6 2.7 18 24-41 11-28 (50)
178 1vdy_A Hypothetical protein (R 28.4 1.9E+02 0.0064 21.7 8.4 97 293-398 21-131 (140)
179 3rru_A TOM1L1 protein; structu 25.2 71 0.0024 24.4 3.8 74 71-144 53-130 (152)
180 1sz9_A PCF11 protein; RNA poly 24.2 2E+02 0.0068 21.5 6.2 86 255-351 25-110 (144)
181 1elk_A Target of MYB1; superhe 23.2 2.5E+02 0.0085 21.3 8.1 95 293-397 30-130 (157)
182 3jxy_A Alkylpurine DNA glycosy 22.3 3.2E+02 0.011 22.2 12.5 141 161-324 65-207 (232)
183 4flb_A Regulation of nuclear P 21.2 1.2E+02 0.004 22.3 4.3 60 201-270 10-69 (132)
No 1
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=3.7e-62 Score=475.34 Aligned_cols=411 Identities=47% Similarity=0.761 Sum_probs=333.3
Q ss_pred CCCCCCC-ccHHHhhhccC-CCCchHHHHhHHHHHHHHHHHhhhHHHHhhhhccccCCCC-CCchh--hhhhhhhccHHH
Q 014945 1 MSLRPNA-RTEVRRSKYKV-AVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQP-LTNSA--ALDNKKLESLPA 75 (415)
Q Consensus 1 ~~~~~~~-~~~~~~~~~k~-~~~~~~~r~~r~~~~~~lRk~~r~~~~~~~R~~~~~~~~~-~~~~~--~~~~~~~~~i~~ 75 (415)
||-+++. .+++|+++||+ |+|++|+||||+++.++|||+||||.+.|||++....++. ++... .........++.
T Consensus 1 ~~~~~~~~~~~~r~~~~k~~~~~~~e~r~~R~~~~v~lRk~kr~e~l~krR~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 80 (529)
T 3tpo_A 1 MSTNENANLPAARLNRFKNKGKDSTEMRRRRIEVNVELRKAKKDEQMLKRRNVSSFPDDATSPLQENRNNQGTVNWSVED 80 (529)
T ss_dssp -------------------------------------------CCSCSCCCCCC---------------CGGGSSCCHHH
T ss_pred CCCCCCCCCcHHHHHHhccCCCChHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCCcccccChhhhccchhhhHHHHHHH
Confidence 6666665 67899999997 9999999999999999999999999999999875433221 22111 111111246899
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHh
Q 014945 76 MVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVID 155 (415)
Q Consensus 76 l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~ 155 (415)
+++.++++|++.+..|+..++++++.+.+++++.+++.|++|.|+++|+..+++.++..|+|+|+|++.++++.+..+++
T Consensus 81 lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~ 160 (529)
T 3tpo_A 81 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVD 160 (529)
T ss_dssp HHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999999999999999998889999999999999999999987666899999999999999999999999999
Q ss_pred CCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccch----hHhHHHHHHHHHHHhhhCC
Q 014945 156 HGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA----KLSMLRNATWTLSNFCRGK 231 (415)
Q Consensus 156 ~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~----~~~~~~~a~~~l~~l~~~~ 231 (415)
.|++|.|+.+|.++++.+++.|+|+|+||+.+++.+++.+.+.|++++|+.++.... ...+.+.++|++++++.+.
T Consensus 161 ~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~ 240 (529)
T 3tpo_A 161 GGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNK 240 (529)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCC
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999995332 3457899999999999987
Q ss_pred -CCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHh
Q 014945 232 -PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI 310 (415)
Q Consensus 232 -~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl 310 (415)
+........+++|.|+.++.+++++++..++|+|++++.+.++..+.+.+.|+++.|+.+|.++++.++.+++++|+|+
T Consensus 241 ~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl 320 (529)
T 3tpo_A 241 NPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 320 (529)
T ss_dssp TTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred cchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHH
Confidence 6666777789999999999999999999999999999999998888899999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHH
Q 014945 311 VTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAW 390 (415)
Q Consensus 311 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~ 390 (415)
+.+++.....+++.|+++.|..++.++ ++.++++|+|+|+|++.+++++...+++.|+++.|+.++.+++++++++|+|
T Consensus 321 ~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~ 399 (529)
T 3tpo_A 321 VTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAW 399 (529)
T ss_dssp TTSCHHHHHHHHHTTGGGGHHHHTTCS-SHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHH
T ss_pred HccchHHHHHHhhcccHHHHHHHHcCC-CHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHH
Confidence 999999999999999999999999998 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHhhCCC
Q 014945 391 AISNATSGGSNEQIKYKFFYVSRTC 415 (415)
Q Consensus 391 aL~nl~~~~~~~~~~~l~~~~~~g~ 415 (415)
+|+|++.+++.+++.+| ++.|+
T Consensus 400 aL~nl~~~~~~~~~~~l---~~~g~ 421 (529)
T 3tpo_A 400 AITNYTSGGTVEQIVYL---VHCGI 421 (529)
T ss_dssp HHHHHHHHSCHHHHHHH---HHTTC
T ss_pred HHHHHHcCCCHHHHHHH---HHCcC
Confidence 99999999999999999 89886
No 2
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=1.8e-56 Score=436.62 Aligned_cols=412 Identities=86% Similarity=1.294 Sum_probs=330.2
Q ss_pred CCCCCCCccHHHhhhccCCCCchHHHHhHHHHHHHHHHHhhhHHHHhhhhccccCCCC-CCchhhhhhhhhccHHHHHHh
Q 014945 1 MSLRPNARTEVRRSKYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQAHQP-LTNSAALDNKKLESLPAMVAG 79 (415)
Q Consensus 1 ~~~~~~~~~~~~~~~~k~~~~~~~~r~~r~~~~~~lRk~~r~~~~~~~R~~~~~~~~~-~~~~~~~~~~~~~~i~~l~~~ 79 (415)
|+++.+.+++.|+++||++++++|+|+||+++.++|||+||+|.+.|||++....+.. ++.......+....++.+++.
T Consensus 3 ~~~~~~~~~~~~~~~~k~~~~~~~~r~~r~~~~~~lrk~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~ 82 (528)
T 4b8j_A 3 MSLRPSERVEVRRNRYKVAVDAEEGRRRREDNMVEIRKSRREESLLKKRREGLQAQAPVPASAATGVDKKLESLPAMIGG 82 (528)
T ss_dssp ------------------------CCCCC-----------------CCCC----------------------CHHHHHHH
T ss_pred CCCCCCCChHHHHHhhcccCChHHHHHhHHHHHHHHHHHHHHHHHHHHhccCCCcccccccccccchhhhHHHHHHHHHH
Confidence 8888888999999999999999999999999999999999999999999974322221 110111112233579999999
Q ss_pred hcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCCh
Q 014945 80 VWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAV 159 (415)
Q Consensus 80 l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i 159 (415)
|.++++..+..|++.|+++++...+++...+++.|++|.|+++|.+++++.++..|+|+|++++.++++.+..+++.|++
T Consensus 83 L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i 162 (528)
T 4b8j_A 83 VYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAV 162 (528)
T ss_dssp HTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHH
T ss_pred HcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcH
Confidence 99999999999999999999877557888999999999999999987658999999999999999989999999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhh
Q 014945 160 PIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQT 239 (415)
Q Consensus 160 ~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~ 239 (415)
+.|+.+|.++++.+++.|+|+|+||+.+++.+++.+...|++++|+.++..+.+..++..++|+|.+|+...+.......
T Consensus 163 ~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~ 242 (528)
T 4b8j_A 163 PIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQT 242 (528)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHH
Confidence 99999999999999999999999999999989999999999999999996677899999999999999998777777778
Q ss_pred hchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHH
Q 014945 240 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQ 319 (415)
Q Consensus 240 ~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~ 319 (415)
.+++|.|+.+|.++++.++..++|+|++++.+.+...+.+++.|+++.|+.+|.++++.++..|+++|+|++.+.+...+
T Consensus 243 ~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~ 322 (528)
T 4b8j_A 243 RPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQ 322 (528)
T ss_dssp TTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999999999999999999999888888899999999999999999999999999999999999999999
Q ss_pred HHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhCCC
Q 014945 320 CIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG 399 (415)
Q Consensus 320 ~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~~ 399 (415)
.+++.|+++.|+.+|.++.++.+++.|+|+|+|++.++++++..+++.|+++.|+.+|.+++++++..|+|+|+|++..+
T Consensus 323 ~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~ 402 (528)
T 4b8j_A 323 CIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGG 402 (528)
T ss_dssp HHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCC
Confidence 99999999999999987657899999999999999999999999999999999999999999999999999999999988
Q ss_pred CHHHHHHHHHHhhCCC
Q 014945 400 SNEQIKYKFFYVSRTC 415 (415)
Q Consensus 400 ~~~~~~~l~~~~~~g~ 415 (415)
++++..++ ++.|+
T Consensus 403 ~~~~~~~l---~~~~~ 415 (528)
T 4b8j_A 403 SHDQIKYL---VSEGC 415 (528)
T ss_dssp CHHHHHHH---HHTTC
T ss_pred CHHHHHHH---HHCCC
Confidence 89999999 77774
No 3
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=100.00 E-value=2.2e-52 Score=407.75 Aligned_cols=403 Identities=55% Similarity=0.827 Sum_probs=349.6
Q ss_pred ccHHHhhhccC-C-CCchHHHHhHHHHHHHHHHHhhhHHHHhhhhcccc---CCCCCCch-----hhhhh-hhhccHHHH
Q 014945 8 RTEVRRSKYKV-A-VDAEEGRRRREDNMVEIRKNKREESLLKKRREGLQ---AHQPLTNS-----AALDN-KKLESLPAM 76 (415)
Q Consensus 8 ~~~~~~~~~k~-~-~~~~~~r~~r~~~~~~lRk~~r~~~~~~~R~~~~~---~~~~~~~~-----~~~~~-~~~~~i~~l 76 (415)
+++.|++.||+ | ++++|+|+||+++.++|||+||++.+.|||++... ....++.+ ..... ...+.++.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~rk~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 92 (530)
T 1wa5_B 13 VPEYRRTNFKNKGRFSADELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEEDESSVSADQQFYSQLQQELPQM 92 (530)
T ss_dssp CCGGGCC-----------CCCCCTTSSCCCCSCCCCCSCCSCCCCC----------------------------CCHHHH
T ss_pred chHHHHHHHhccCCCChHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCccccccccCCchhhhhhhhhhhhhhhHHHHHHH
Confidence 56789999999 8 99999999999999999999999999999997542 11111100 00000 122579999
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhC
Q 014945 77 VAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDH 156 (415)
Q Consensus 77 ~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~ 156 (415)
++.|+++++..+..|+..|+++++....++...+++.|++|.|+++|.+++++.++..|+|+|++++.++++.+..+++.
T Consensus 93 v~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~ 172 (530)
T 1wa5_B 93 TQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDA 172 (530)
T ss_dssp HHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHC
Confidence 99999999999999999999998875567778889999999999999997339999999999999999888899999999
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCC-CCCc
Q 014945 157 GAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPL 235 (415)
Q Consensus 157 g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~-~~~~ 235 (415)
|+++.|+.+|.++++.+++.|+|+|++|+.+.+..++.+...|+++.|+.++ .+.+..++..++|+|.+|+.+. +...
T Consensus 173 g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~L~~~~~~~~~ 251 (530)
T 1wa5_B 173 DAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLF-NSNKPSLIRTATWTLSNLCRGKKPQPD 251 (530)
T ss_dssp TCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGG-GSCCHHHHHHHHHHHHHHHCCSSSCCC
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHh-ccCCHHHHHHHHHHHHHHhCCCCCCCc
Confidence 9999999999999999999999999999999888999999999999999999 5588899999999999999887 6666
Q ss_pred hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCCh
Q 014945 236 FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD 315 (415)
Q Consensus 236 ~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~ 315 (415)
.....+++|.|+.++.++++.++..++|+|++++...++..+.+++.|+++.|+.+|.++++.++..|+++|++++.+.+
T Consensus 252 ~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~ 331 (530)
T 1wa5_B 252 WSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGND 331 (530)
T ss_dssp HHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCH
Confidence 77778999999999999999999999999999999888878888999999999999999999999999999999999999
Q ss_pred HHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHH
Q 014945 316 MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNA 395 (415)
Q Consensus 316 ~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl 395 (415)
...+.+++.|+++.|+.+|.++ ++.+++.|+|+|+|++.+++++++.+++.|+++.|+.+|.+++++++..|+|+|+|+
T Consensus 332 ~~~~~~~~~~~l~~L~~lL~~~-~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l 410 (530)
T 1wa5_B 332 LQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNA 410 (530)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcchHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 8888899999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCH--HHHHHHHHHhhCCC
Q 014945 396 TSGGSN--EQIKYKFFYVSRTC 415 (415)
Q Consensus 396 ~~~~~~--~~~~~l~~~~~~g~ 415 (415)
+..+++ +++.++ ++.|+
T Consensus 411 ~~~~~~~~~~~~~l---~~~~~ 429 (530)
T 1wa5_B 411 SSGGLQRPDIIRYL---VSQGC 429 (530)
T ss_dssp HHHTTTCTHHHHHH---HHTTC
T ss_pred HhcCCCcHHHHHHH---HHCCC
Confidence 988776 888888 77664
No 4
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=1.5e-50 Score=391.39 Aligned_cols=381 Identities=47% Similarity=0.771 Sum_probs=321.8
Q ss_pred HHHHHHHHHhhhHHHHhhhhccccCCCCCCchhhhhhhh-hccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhH
Q 014945 31 DNMVEIRKNKREESLLKKRREGLQAHQPLTNSAALDNKK-LESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINE 109 (415)
Q Consensus 31 ~~~~~lRk~~r~~~~~~~R~~~~~~~~~~~~~~~~~~~~-~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~ 109 (415)
.-.++.|+++++......++...+..+.+..+....+.. -..++.+++.++|+|++.|..|+..+|+++|.+++++++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ 95 (510)
T 3ul1_B 16 SGMLETAAALFERNHMDSPDLGTDDDDLAMADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDN 95 (510)
T ss_dssp -------------------------------------CCSSCCHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHH
T ss_pred cccHHHHHHHHHhhccCCccccCCccccchhhhccccchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHH
Confidence 344566666666666665554443332211111111111 1268999999999999999999999999999988999999
Q ss_pred HHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCc
Q 014945 110 VIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP 189 (415)
Q Consensus 110 ~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~ 189 (415)
+++.|++|.|+++|++.+++.+|..|+|+|+||++++++++..+++.|++|.|+.+|.++++.++++|+|+|+||+.+++
T Consensus 96 ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~ 175 (510)
T 3ul1_B 96 IIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGS 175 (510)
T ss_dssp HHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCH
Confidence 99999999999999876658999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHhcCChHHHHHHhccch----hHhHHHHHHHHHHHhhhCC-CCCchhhhhchHHHHHHhhcCCChhHHHHHHHH
Q 014945 190 KCRDLVLSNGALMPLLAQFNEHA----KLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSNDDEVLTDACWA 264 (415)
Q Consensus 190 ~~~~~~~~~g~i~~L~~~l~~~~----~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~ 264 (415)
.+++.+.+.|++++|+.++.... ...+.+.++|++++++.+. +........+++|.|+.++.+++++++..++|+
T Consensus 176 ~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~a 255 (510)
T 3ul1_B 176 AFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWA 255 (510)
T ss_dssp HHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHH
Confidence 99999999999999999995332 3457899999999999987 566667778999999999999999999999999
Q ss_pred HHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHH
Q 014945 265 LSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKK 344 (415)
Q Consensus 265 l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~ 344 (415)
|++++....+..+.+.+.|+++.|+.+|.+++..++.+++++|+|++.+++..+..+++.|+++.|..++.++ ++.+++
T Consensus 256 L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~v~~ 334 (510)
T 3ul1_B 256 ISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQK 334 (510)
T ss_dssp HHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCS-SHHHHH
T ss_pred HHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCC-CHHHHH
Confidence 9999999988888899999999999999999999999999999999999999999999999999999999998 999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhCCC
Q 014945 345 EACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKYKFFYVSRTC 415 (415)
Q Consensus 345 ~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~~g~ 415 (415)
.|+|+|+|++.++++++..+++.|+++.|+.++.+++++++++|+|+|+|++.+++.+++.+| ++.|+
T Consensus 335 ~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L---~~~g~ 402 (510)
T 3ul1_B 335 EATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYL---VHCGI 402 (510)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHH---HHTTC
T ss_pred HHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHH---HHCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999 89886
No 5
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=100.00 E-value=1.1e-39 Score=311.97 Aligned_cols=339 Identities=62% Similarity=0.968 Sum_probs=311.7
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhc-CchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhH
Q 014945 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQS-GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 151 (415)
Q Consensus 73 i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~-g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~ 151 (415)
++.+++.++++++..+..|+..|+++++...+++.+.+++. |++|.|+++|++++++.++..|+++|++++.++++...
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 101 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTR 101 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 78999999999999999999999999875446667778887 99999999999983399999999999999998888888
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCC
Q 014945 152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK 231 (415)
Q Consensus 152 ~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~ 231 (415)
.+++.|+++.|+.+|.++++.+++.|+|+|++++.+.+..++.+.+.|+++.|+.++..+.+..++..++|+|.+++...
T Consensus 102 ~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~ 181 (450)
T 2jdq_A 102 IVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGK 181 (450)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCS
T ss_pred HHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCC
Confidence 88999999999999999999999999999999999998899999999999999999954578999999999999999876
Q ss_pred -CCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHh
Q 014945 232 -PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI 310 (415)
Q Consensus 232 -~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl 310 (415)
+........+++|.|+.++.++|+.++..++|++.+++...++....+.+.|+++.|+.+|.++++.++..|+++|+++
T Consensus 182 ~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 261 (450)
T 2jdq_A 182 SPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNI 261 (450)
T ss_dssp SSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHH
Confidence 5555566689999999999999999999999999999998877778888899999999999999999999999999999
Q ss_pred hcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHH
Q 014945 311 VTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAW 390 (415)
Q Consensus 311 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~ 390 (415)
+.+.+...+.+++.|+++.|+.++.++ ++.++..|+|+|+|++.++++..+.+++.|+++.|+.++.+++++++..|+|
T Consensus 262 ~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~ 340 (450)
T 2jdq_A 262 VTGDDIQTQVILNCSALQSLLHLLSSP-KESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAW 340 (450)
T ss_dssp TTSCHHHHHHHHTTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHH
T ss_pred hhCChHHHHHHHHCccHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHH
Confidence 999988888889999999999999998 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHhhCCC
Q 014945 391 AISNATSGGSNEQIKYKFFYVSRTC 415 (415)
Q Consensus 391 aL~nl~~~~~~~~~~~l~~~~~~g~ 415 (415)
+|+|++.+++++++.++ ++.|+
T Consensus 341 ~L~~l~~~~~~~~~~~l---~~~~~ 362 (450)
T 2jdq_A 341 AITNATSGGSAEQIKYL---VELGC 362 (450)
T ss_dssp HHHHHHHHCCHHHHHHH---HHHTC
T ss_pred HHHHHHcCCCHHHHHHH---HHCCC
Confidence 99999988788888887 66553
No 6
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=3.2e-39 Score=313.99 Aligned_cols=323 Identities=28% Similarity=0.441 Sum_probs=293.4
Q ss_pred ccHHHHHHhhcC-CCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchh
Q 014945 71 ESLPAMVAGVWS-DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN 149 (415)
Q Consensus 71 ~~i~~l~~~l~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~ 149 (415)
|.+|.|+++|.+ +++.++..|+++|.++++.. ......+++.|++|.|+.+|.+++ ++++..|+|+|+||+.++++.
T Consensus 119 G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~-~~~~~~vv~~Gaip~Lv~LL~s~~-~~v~e~A~~aL~nLa~~~~~~ 196 (529)
T 3tpo_A 119 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGT-SEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGAGSAF 196 (529)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred CCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhccCHHH
Confidence 789999999974 56899999999999998764 566678999999999999999999 999999999999999998999
Q ss_pred hHHHHhCCChHHHHHhhCCCC-----HHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHH
Q 014945 150 TRVVIDHGAVPIFVRLLSSPT-----DDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTL 224 (415)
Q Consensus 150 ~~~~~~~g~i~~L~~ll~~~~-----~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l 224 (415)
+..+.+.|+++.|+.+|..++ ..+...++|++.+++.+...........|+++.|+.++ .+.++.++..++|+|
T Consensus 197 r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL-~~~~~~v~~~a~~aL 275 (529)
T 3tpo_A 197 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-HHNDPEVLADSCWAI 275 (529)
T ss_dssp HHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHT-TSSCHHHHHHHHHHH
T ss_pred HHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHh-cCCcHHHHHHHHHHH
Confidence 999999999999999998643 45788999999999987655555555667899999999 788889999999999
Q ss_pred HHhhhCCCCC-chhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHH
Q 014945 225 SNFCRGKPQP-LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPA 303 (415)
Q Consensus 225 ~~l~~~~~~~-~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a 303 (415)
++++.+.+.. ......+++|.|+.+|.+++..++..+++++++++.+++.....+++.|+++.|+.+|.++++.++..|
T Consensus 276 ~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a 355 (529)
T 3tpo_A 276 SYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEA 355 (529)
T ss_dssp HHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHH
T ss_pred HHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHH
Confidence 9999875322 233447899999999999999999999999999999999888889999999999999999999999999
Q ss_pred HHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhc-CCHHHHHHHHHcCCHHHHHHHhccCCH
Q 014945 304 LRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA-GNVNQIQAIIEAGIIGPLVNLLLNAEF 382 (415)
Q Consensus 304 ~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~-~~~~~~~~l~~~~~i~~L~~~l~~~~~ 382 (415)
+|+|+|++.+++.+...+++.|++|.|+.++.++ +..++++|+|+|+|++. ++++++..+++.|+++.|+++|.++|+
T Consensus 356 ~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~ 434 (529)
T 3tpo_A 356 TWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDT 434 (529)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCH
T ss_pred HHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCH
Confidence 9999999999999999999999999999999999 99999999999999997 688999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhC
Q 014945 383 EIKKEAAWAISNATS 397 (415)
Q Consensus 383 ~v~~~a~~aL~nl~~ 397 (415)
+++..++++|.|+..
T Consensus 435 ~i~~~~L~aL~nil~ 449 (529)
T 3tpo_A 435 KIIQVILDAISNIFQ 449 (529)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999974
No 7
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=2e-39 Score=313.56 Aligned_cols=323 Identities=28% Similarity=0.444 Sum_probs=292.9
Q ss_pred ccHHHHHHhhcC-CCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchh
Q 014945 71 ESLPAMVAGVWS-DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN 149 (415)
Q Consensus 71 ~~i~~l~~~l~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~ 149 (415)
|.+|.|+++|++ +++.+|..|+++|.++++.+ .+....+++.|++|.|+.+|++++ ++++..|+|+|+||+.++++.
T Consensus 100 G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~-~e~~~~vv~~GaIp~Lv~lL~s~~-~~v~e~A~~aL~nLa~d~~~~ 177 (510)
T 3ul1_B 100 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGT-SEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGDGSAF 177 (510)
T ss_dssp THHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred CCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHhCCHHH
Confidence 789999999985 56899999999999998765 667788999999999999999998 999999999999999998999
Q ss_pred hHHHHhCCChHHHHHhhCCCC-----HHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHH
Q 014945 150 TRVVIDHGAVPIFVRLLSSPT-----DDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTL 224 (415)
Q Consensus 150 ~~~~~~~g~i~~L~~ll~~~~-----~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l 224 (415)
+..+.+.|+++.|+.++.+++ ..+...++|++.|++.+...........|+++.|+.++ .+.+..++..++|+|
T Consensus 178 r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL-~~~~~~v~~~A~~aL 256 (510)
T 3ul1_B 178 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-HHNDPEVLADSCWAI 256 (510)
T ss_dssp HHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHT-TCSCHHHHHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHH-hcCCHHHHHHHHHHH
Confidence 999999999999999998754 45788999999999987654555555567899999999 788889999999999
Q ss_pred HHhhhCCCCC-chhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHH
Q 014945 225 SNFCRGKPQP-LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPA 303 (415)
Q Consensus 225 ~~l~~~~~~~-~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a 303 (415)
.+|+...+.. ......+++|.|+.+|.+++..++..+++++++++.+++.....+++.|+++.|+.+|.+++..++..|
T Consensus 257 ~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A 336 (510)
T 3ul1_B 257 SYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEA 336 (510)
T ss_dssp HHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHH
T ss_pred HHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHH
Confidence 9999875322 233447899999999999999999999999999999999888899999999999999999999999999
Q ss_pred HHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhc-CCHHHHHHHHHcCCHHHHHHHhccCCH
Q 014945 304 LRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA-GNVNQIQAIIEAGIIGPLVNLLLNAEF 382 (415)
Q Consensus 304 ~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~-~~~~~~~~l~~~~~i~~L~~~l~~~~~ 382 (415)
+|+|+|++.+++.+...+++.|+++.|+.++.++ +..++++|+|+|+|++. ++++++..+++.|+++.|+++|.++|+
T Consensus 337 ~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~ 415 (510)
T 3ul1_B 337 TWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDT 415 (510)
T ss_dssp HHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCH
T ss_pred HHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCH
Confidence 9999999999999999999999999999999999 99999999999999997 688999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhC
Q 014945 383 EIKKEAAWAISNATS 397 (415)
Q Consensus 383 ~v~~~a~~aL~nl~~ 397 (415)
+++..++++|.|+..
T Consensus 416 ~i~~~~L~aL~nil~ 430 (510)
T 3ul1_B 416 KIIQVILDAISNIFQ 430 (510)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999974
No 8
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=5.6e-40 Score=324.33 Aligned_cols=332 Identities=15% Similarity=0.150 Sum_probs=288.4
Q ss_pred HHHHHHhhcCC--CHHHHHHHHHHHHHHhccCCCCchhHHH-hcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCch-
Q 014945 73 LPAMVAGVWSD--DRNIQLDATTQFRKLLSIERSPPINEVI-QSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSE- 148 (415)
Q Consensus 73 i~~l~~~l~~~--~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~- 148 (415)
++.++++|.++ |++.+..|++.|.++... .+....++ +.|++|.|+++|++++ +.+++.|+|+|+||+.++++
T Consensus 379 v~~l~~lL~~~~~d~~v~~~AveaLayLS~~--~~vk~~lv~d~g~Ip~LV~LL~s~d-~~i~~~al~~L~NLt~~~d~q 455 (810)
T 3now_A 379 AEACRRFLIKPGKDKDIRRWAADGLAYLTLD--AECKEKLIEDKASIHALMDLARGGN-QSCLYGVVTTFVNLCNAYEKQ 455 (810)
T ss_dssp HHHHHHHHHCSSCCSSHHHHHHHHHHHHTTS--HHHHHHHHHCHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHTTCSCCC
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHhCC--cHHHHHHHHccchHHHHHHHhCCCC-hHHHHHHHHHHHHHcCCchhh
Confidence 57788888887 899999999999999542 34444455 6899999999999988 89999999999999986531
Q ss_pred ----------------------------hh---HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHh
Q 014945 149 ----------------------------NT---RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLS 197 (415)
Q Consensus 149 ----------------------------~~---~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~ 197 (415)
.+ +.+++.|++|.|+.++.++++.++++|+|+|+||+.+. .+|..+++
T Consensus 456 ~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~-~~r~~Vv~ 534 (810)
T 3now_A 456 EMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLK-ELRGKVVQ 534 (810)
T ss_dssp CCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSH-HHHHHHHH
T ss_pred hhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-HHHHHHHH
Confidence 12 67889999999999999999999999999999999764 58999999
Q ss_pred cCChHHHHHHhccchhHhHHHHHHHHHHHhhhCC-CCCch--hhhhchHHHHHHhhcCCC-hhHHHHHHHHHHHhccCCh
Q 014945 198 NGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLF--EQTRPALPALERLIHSND-DEVLTDACWALSYLSDGTN 273 (415)
Q Consensus 198 ~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~-~~~~~--~~~~~~l~~l~~lL~~~d-~~v~~~a~~~l~~l~~~~~ 273 (415)
.|++++|+.+| .+.+...++.|+|+|++++.+. +...+ ....+++|.|+.+|.+++ ...+.+|+|+|.||+..++
T Consensus 535 ~Gaip~Lv~LL-~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d 613 (810)
T 3now_A 535 EGGVKALLRMA-LEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNE 613 (810)
T ss_dssp TTHHHHHHHHH-HSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCH
T ss_pred CCCHHHHHHHH-ccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCH
Confidence 99999999999 6667788999999999999764 22211 123578999999998663 3455789999999999988
Q ss_pred HHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHH-CCChHHHHHHhcCCCccchHHHHHHHHHH
Q 014945 274 DKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIIN-HQALPCLLDLLTQNYKKSIKKEACWTISN 352 (415)
Q Consensus 274 ~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~-~~~l~~L~~ll~~~~~~~v~~~a~~~l~n 352 (415)
+..+.+++.|+++.|+.+|.++++.++.+|+++|+|++.+++... .+.+ .|.++.|+.++.++ +..+++.|+|+|+|
T Consensus 614 ~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~-~~v~~~g~l~~Lv~LL~s~-d~~vq~~Aa~ALan 691 (810)
T 3now_A 614 SVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIK-MFEGNNDRVKFLALLCEDE-DEETATACAGALAI 691 (810)
T ss_dssp HHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHH-HHHSSSSHHHHHHHGGGCS-SHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHH-HHHhccCcHHHHHHHhcCC-CHHHHHHHHHHHHH
Confidence 888889999999999999999999999999999999999776444 4554 69999999999998 99999999999999
Q ss_pred HhcCCHHHHHHHHH-cCCHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhCCC
Q 014945 353 ITAGNVNQIQAIIE-AGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKYKFFYVSRTC 415 (415)
Q Consensus 353 l~~~~~~~~~~l~~-~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~~g~ 415 (415)
++.+++.+++.+++ .|+++.|+.++.++++++++.|+|+|.|++.+ +.++..++ ++.|+
T Consensus 692 Lt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~-s~e~~~~l---~e~G~ 751 (810)
T 3now_A 692 ITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINA-GEEIAKKL---FETDI 751 (810)
T ss_dssp HHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTT-CHHHHHHH---HTSTH
T ss_pred HhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhC-CHHHHHHH---HHCCC
Confidence 99988999999998 89999999999999999999999999999985 67888999 88884
No 9
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=3.4e-39 Score=302.48 Aligned_cols=335 Identities=19% Similarity=0.183 Sum_probs=267.0
Q ss_pred hhccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCch-hHHHhcCchHHHHHhhcCCCC-----------hHHHHHHH
Q 014945 69 KLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPI-NEVIQSGVVPRFIEFLSRDDF-----------PQLQFEAA 136 (415)
Q Consensus 69 ~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~-~~~~~~g~i~~L~~ll~~~~~-----------~~i~~~a~ 136 (415)
+++.++.++..+.++|+.. .++.+++.+.+++. ..+++.|++|.|+++|+..+. ++++..|+
T Consensus 30 ~~~~~~~l~~~~~~~~~~~------~~~~ll~~~~~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~ 103 (458)
T 3nmz_A 30 KVEMVYSLLSMLGTHDKDD------MSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARAS 103 (458)
T ss_dssp ---------------CCHH------HHHHHHHHHSSTTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHH
T ss_pred hHHHHHHHHHHhcCCCHHH------HHHHHHHHHcCCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHH
Confidence 4467889999999888762 44444444444555 678899999999999997542 69999999
Q ss_pred HHHHHHhCCCchhhHHHHhCCCh----------HHHHHhhCCCC--HH-----HHH-------HHHHHHHHhcCCCchhH
Q 014945 137 WALTNIASGTSENTRVVIDHGAV----------PIFVRLLSSPT--DD-----VRE-------QAVWALGNVAGDSPKCR 192 (415)
Q Consensus 137 ~~L~~l~~~~~~~~~~~~~~g~i----------~~L~~ll~~~~--~~-----v~~-------~a~~~L~nl~~~~~~~~ 192 (415)
|+|+||+.++++.+....+.|++ +.+++++.+.. .+ +++ +|+|+|+|++.+ +.+|
T Consensus 104 ~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~-~e~R 182 (458)
T 3nmz_A 104 AALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EEHR 182 (458)
T ss_dssp HHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTS-HHHH
T ss_pred HHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCC-HHHH
Confidence 99999999999999998888888 77777787642 12 444 999999999776 7799
Q ss_pred HHHHhcCChHHHHHHhcc----------chhHhHHHHHHHHHHHhhhCCCCCchhh--hhchHHHHHHhhcCCChhHHHH
Q 014945 193 DLVLSNGALMPLLAQFNE----------HAKLSMLRNATWTLSNFCRGKPQPLFEQ--TRPALPALERLIHSNDDEVLTD 260 (415)
Q Consensus 193 ~~~~~~g~i~~L~~~l~~----------~~~~~~~~~a~~~l~~l~~~~~~~~~~~--~~~~l~~l~~lL~~~d~~v~~~ 260 (415)
+.+.+.|++++|+.+|.. ..++.++++|+|+|.||+.+++...... ..+++|.|+.+|.+++++++..
T Consensus 183 ~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~ 262 (458)
T 3nmz_A 183 HAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQV 262 (458)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHH
T ss_pred HHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHH
Confidence 999999999999999942 2467899999999999998764333222 3567999999999999999999
Q ss_pred HHHHHHHhccC-ChHHHHHHHHcCcHHHHHHhc-CCCChhhHHHHHHHHHHhhcCChHHHHHHH-HCCChHHHHHHhcCC
Q 014945 261 ACWALSYLSDG-TNDKIQAVIEAGVCPRLVELL-RHPSPSVLIPALRTVGNIVTGDDMQTQCII-NHQALPCLLDLLTQN 337 (415)
Q Consensus 261 a~~~l~~l~~~-~~~~~~~~~~~~~i~~L~~lL-~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~-~~~~l~~L~~ll~~~ 337 (415)
++|+|.+|+.. ++.....+.+.|+++.|+.+| .+.++.++..++.+|+||+.+.++....+. ..|+++.|+.+|.++
T Consensus 263 A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~ 342 (458)
T 3nmz_A 263 IASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYR 342 (458)
T ss_dssp HHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCC
T ss_pred HHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCC
Confidence 99999999985 566778889999999999975 567889999999999999996655555565 789999999999887
Q ss_pred Ccc----chHHHHHHHHHHHhc---CCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 014945 338 YKK----SIKKEACWTISNITA---GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKYKFFY 410 (415)
Q Consensus 338 ~~~----~v~~~a~~~l~nl~~---~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~ 410 (415)
++ .+++.|+|+|.|++. +++++++.+++.|+++.|+.+|.+++.+++++|+|+|.|++.. ++++..++
T Consensus 343 -~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~-~~~~~~~i--- 417 (458)
T 3nmz_A 343 -SQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR-NPKDQEAL--- 417 (458)
T ss_dssp -CSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSS-CHHHHHHH---
T ss_pred -CCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcC-CHHHHHHH---
Confidence 44 499999999999997 7899999999999999999999999999999999999999975 67888888
Q ss_pred hhCCC
Q 014945 411 VSRTC 415 (415)
Q Consensus 411 ~~~g~ 415 (415)
++.|+
T Consensus 418 ~~~G~ 422 (458)
T 3nmz_A 418 WDMGA 422 (458)
T ss_dssp HHHTH
T ss_pred HHCCC
Confidence 78774
No 10
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=1.4e-37 Score=291.69 Aligned_cols=326 Identities=17% Similarity=0.186 Sum_probs=276.6
Q ss_pred hccHHHHHHhhcCC------------CHHHHHHHHHHHHHHhccCCCCchhHHHhcCch----------HHHHHhhcCCC
Q 014945 70 LESLPAMVAGVWSD------------DRNIQLDATTQFRKLLSIERSPPINEVIQSGVV----------PRFIEFLSRDD 127 (415)
Q Consensus 70 ~~~i~~l~~~l~~~------------~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i----------~~L~~ll~~~~ 127 (415)
-|.+|.|+++|+.. +++.+..|+++|.++++++ ++..+...+.|++ +.+++++.+..
T Consensus 69 ~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 147 (458)
T 3nmz_A 69 SGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQ-PDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHE 147 (458)
T ss_dssp HTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHS-CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred CCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccC-cchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhc
Confidence 38999999999963 3799999999999999987 6666777777777 77778887652
Q ss_pred -ChH-----HHH-------HHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCC-----------CCHHHHHHHHHHHHH
Q 014945 128 -FPQ-----LQF-------EAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-----------PTDDVREQAVWALGN 183 (415)
Q Consensus 128 -~~~-----i~~-------~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-----------~~~~v~~~a~~~L~n 183 (415)
..+ ++. +|+|+|.|++.+ ++++..+++.|+++.|+.+|.. .++.++..|+|+|.|
T Consensus 148 ~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~n 226 (458)
T 3nmz_A 148 PGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTN 226 (458)
T ss_dssp SSSCCCSCC--CCCTTTTHHHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred cccccccCCccchhhHHHHHHHHHHHHhcCC-HHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHH
Confidence 112 333 999999999875 9999999999999999999941 346789999999999
Q ss_pred hcCCCchhHHHHHh-cCChHHHHHHhccchhHhHHHHHHHHHHHhhhCC-C-CCchhhhhchHHHHHHhh-cCCChhHHH
Q 014945 184 VAGDSPKCRDLVLS-NGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-P-QPLFEQTRPALPALERLI-HSNDDEVLT 259 (415)
Q Consensus 184 l~~~~~~~~~~~~~-~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~-~-~~~~~~~~~~l~~l~~lL-~~~d~~v~~ 259 (415)
|+.+++..+..+.. .|+++.|+.+| .+.+.+++..++|+|.||+... + ........|++|.|+.+| .+.++.++.
T Consensus 227 La~~~~~~k~~i~~~~GaIp~LV~LL-~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~ 305 (458)
T 3nmz_A 227 LTFGDVANKATLCSMKGCMRALVAQL-KSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLK 305 (458)
T ss_dssp HHTTCHHHHHHHHHCHHHHHHHHHGG-GCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHH
T ss_pred HhCCCcccHHHHHHcCCcHHHHHHHH-hCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHH
Confidence 99988777767654 45699999999 6788999999999999999752 2 223334478999999975 567899999
Q ss_pred HHHHHHHHhccCChHHHHHHH-HcCcHHHHHHhcCCCCh----hhHHHHHHHHHHhhc---CChHHHHHHHHCCChHHHH
Q 014945 260 DACWALSYLSDGTNDKIQAVI-EAGVCPRLVELLRHPSP----SVLIPALRTVGNIVT---GDDMQTQCIINHQALPCLL 331 (415)
Q Consensus 260 ~a~~~l~~l~~~~~~~~~~~~-~~~~i~~L~~lL~~~~~----~v~~~a~~~l~nl~~---~~~~~~~~~~~~~~l~~L~ 331 (415)
.++.+|.+|+...++....+. ..|+++.|+.+|.+.+. .++..|+++|.|++. ++++.++.+.+.|+++.|+
T Consensus 306 ~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv 385 (458)
T 3nmz_A 306 SVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLL 385 (458)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHH
Confidence 999999999985544444455 78999999999987654 489999999999997 7888999999999999999
Q ss_pred HHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhCCC
Q 014945 332 DLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG 399 (415)
Q Consensus 332 ~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~~ 399 (415)
.+|.++ +..++++|+|+|+|++.++++++..+++.|+++.|++++.++++++++.|+|+|.|++.+.
T Consensus 386 ~LL~~~-~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 386 QHLKSH-SLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp HHSSCS-CHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred HHHcCC-ChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 999998 9999999999999999889999999999999999999999999999999999999999875
No 11
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=100.00 E-value=1.7e-36 Score=289.78 Aligned_cols=325 Identities=27% Similarity=0.379 Sum_probs=290.0
Q ss_pred ccHHHHHHhhcCC-CHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchh
Q 014945 71 ESLPAMVAGVWSD-DRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN 149 (415)
Q Consensus 71 ~~i~~l~~~l~~~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~ 149 (415)
+.++.+++.|+++ ++.++..|+++|.++.... .+....+++.|++|.|++++++++ +.++..|+++|++++.++++.
T Consensus 64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~lL~~~~-~~vr~~a~~~L~~l~~~~~~~ 141 (450)
T 2jdq_A 64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGN-SLQTRIVIQAGAVPIFIELLSSEF-EDVQEQAVWALGNIAGDSTMC 141 (450)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHhCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHccCCHHH
Confidence 5689999999988 8999999999999998653 455566788999999999999988 999999999999999988889
Q ss_pred hHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhcCCC-chhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHh
Q 014945 150 TRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDS-PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNF 227 (415)
Q Consensus 150 ~~~~~~~g~i~~L~~ll~~-~~~~v~~~a~~~L~nl~~~~-~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l 227 (415)
+..+++.|+++.|+.++.+ ++..++..++|+|++++.+. +.....+ ..++++.|+.++ .+.+..++..++|+|.++
T Consensus 142 ~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~~~l-~~~~~~v~~~a~~~L~~l 219 (450)
T 2jdq_A 142 RDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAK-VSPCLNVLSWLL-FVSDTDVLADACWALSYL 219 (450)
T ss_dssp HHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGG-TGGGHHHHHHHT-TCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHH-HHHHHHHHHHHH-ccCCHHHHHHHHHHHHHH
Confidence 9999999999999999995 78999999999999999765 4332232 378999999999 677889999999999999
Q ss_pred hhCCC-CCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHH
Q 014945 228 CRGKP-QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 306 (415)
Q Consensus 228 ~~~~~-~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~ 306 (415)
+...+ ........+++|.|+.++.++++.++..++++|++++.+.+...+.+++.|+++.|+.+|.++++.++..|+++
T Consensus 220 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~ 299 (450)
T 2jdq_A 220 SDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWT 299 (450)
T ss_dssp TSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHH
Confidence 98642 22223346899999999999999999999999999999888877888889999999999999999999999999
Q ss_pred HHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcC-CHHHHHHHHHcCCHHHHHHHhccCCHHHH
Q 014945 307 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-NVNQIQAIIEAGIIGPLVNLLLNAEFEIK 385 (415)
Q Consensus 307 l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~-~~~~~~~l~~~~~i~~L~~~l~~~~~~v~ 385 (415)
|++++.+.+...+.+++.|+++.|+.++.++ ++.+|..|+|+|+|++.+ +++..+.+++.|+++.|++++.+++++++
T Consensus 300 L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~ 378 (450)
T 2jdq_A 300 ISNITAGNRAQIQTVIDANIFPALISILQTA-EFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIV 378 (450)
T ss_dssp HHHHTTSCHHHHHHHHHTTHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHH
T ss_pred HHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHH
Confidence 9999999888888899999999999999998 999999999999999974 78889999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCC
Q 014945 386 KEAAWAISNATSGGS 400 (415)
Q Consensus 386 ~~a~~aL~nl~~~~~ 400 (415)
..|+++|.+++..++
T Consensus 379 ~~a~~aL~~l~~~~~ 393 (450)
T 2jdq_A 379 QVALNGLENILRLGE 393 (450)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhch
Confidence 999999999997543
No 12
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=2.7e-36 Score=294.08 Aligned_cols=324 Identities=27% Similarity=0.398 Sum_probs=293.4
Q ss_pred ccHHHHHHhhcCCC-HHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchh
Q 014945 71 ESLPAMVAGVWSDD-RNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN 149 (415)
Q Consensus 71 ~~i~~l~~~l~~~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~ 149 (415)
+.+|.|+++|.+++ +.++..|+++|.++.+.. ......+++.|++|.|+.+|.+++ +.++..|+|+|++++.+++..
T Consensus 117 g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~lL~~~~-~~v~~~a~~aL~~l~~~~~~~ 194 (528)
T 4b8j_A 117 GVVPRFVQFLTREDFPQLQFEAAWALTNIASGT-SENTKVVIDHGAVPIFVKLLGSSS-DDVREQAVWALGNVAGDSPKC 194 (528)
T ss_dssp TCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHTCHHH
T ss_pred CCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC-HHHHHHHHhCCcHHHHHHHhcCCC-HHHHHHHHHHHHHHhCCChhh
Confidence 68999999999876 999999999999998753 556677889999999999999988 999999999999999988889
Q ss_pred hHHHHhCCChHHHHHhh-CCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhh
Q 014945 150 TRVVIDHGAVPIFVRLL-SSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC 228 (415)
Q Consensus 150 ~~~~~~~g~i~~L~~ll-~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~ 228 (415)
+..+.+.|+++.|+.++ .+.++.++..++|+|++++...+.. ......|+++.|+.++ .+.+..++..++|+|.+++
T Consensus 195 ~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~-~~~~~~~~l~~L~~lL-~~~~~~v~~~a~~aL~~l~ 272 (528)
T 4b8j_A 195 RDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQP-SFEQTRPALPALARLI-HSNDEEVLTDACWALSYLS 272 (528)
T ss_dssp HHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCC-CHHHHTTHHHHHHHHT-TCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCC-cHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999 6688999999999999999876533 3445688999999999 7788999999999999999
Q ss_pred hCCCCC-chhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCC-ChhhHHHHHHH
Q 014945 229 RGKPQP-LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP-SPSVLIPALRT 306 (415)
Q Consensus 229 ~~~~~~-~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~~ 306 (415)
...+.. ......+++|.|+.+|.++++.++..++++|++++.+.+...+.+++.|+++.|+.+|.++ ++.++..|+|+
T Consensus 273 ~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~ 352 (528)
T 4b8j_A 273 DGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWT 352 (528)
T ss_dssp SSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHH
Confidence 764322 2333468999999999999999999999999999998888888899999999999999988 89999999999
Q ss_pred HHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcC-CHHHHHHHHHcCCHHHHHHHhccCCHHHH
Q 014945 307 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-NVNQIQAIIEAGIIGPLVNLLLNAEFEIK 385 (415)
Q Consensus 307 l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~-~~~~~~~l~~~~~i~~L~~~l~~~~~~v~ 385 (415)
|+|++.+.+.....+++.|+++.|+.++.++ ++.++..|+|+|+|++.+ +++....+++.|+++.|+.+|.+++++++
T Consensus 353 L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~ 431 (528)
T 4b8j_A 353 ISNITAGNKDQIQAVINAGIIGPLVNLLQTA-EFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIV 431 (528)
T ss_dssp HHHHHTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHH
T ss_pred HHHHHCCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHH
Confidence 9999998888888999999999999999998 999999999999999984 89999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCC
Q 014945 386 KEAAWAISNATSGG 399 (415)
Q Consensus 386 ~~a~~aL~nl~~~~ 399 (415)
..|+++|.+++..+
T Consensus 432 ~~al~~L~~l~~~~ 445 (528)
T 4b8j_A 432 TVCLEGLENILKVG 445 (528)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998654
No 13
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=100.00 E-value=3.9e-36 Score=292.97 Aligned_cols=326 Identities=27% Similarity=0.372 Sum_probs=292.0
Q ss_pred ccHHHHHHhhcCC-CHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchh
Q 014945 71 ESLPAMVAGVWSD-DRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN 149 (415)
Q Consensus 71 ~~i~~l~~~l~~~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~ 149 (415)
+.+|.|++.|.++ ++.++..|+++|.++.+.. ......+++.|++|.|+.+|.+++ +.++..|+|+|++++.++++.
T Consensus 130 g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~-~~~~~~~~~~g~i~~Lv~lL~~~~-~~vr~~A~~aL~~l~~~~~~~ 207 (530)
T 1wa5_B 130 GVVPRLVEFMRENQPEMLQLEAAWALTNIASGT-SAQTKVVVDADAVPLFIQLLYTGS-VEVKEQAIWALGNVAGDSTDY 207 (530)
T ss_dssp TCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTCHHHHHHHHHHCC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred CCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC-HHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhCCCccc
Confidence 6899999999987 8999999999999997653 445667888999999999999888 999999999999999988889
Q ss_pred hHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhh
Q 014945 150 TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 229 (415)
Q Consensus 150 ~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~ 229 (415)
+..+...|+++.|+.++.+.++.++..|+|+|++|+.+...........++++.|+.++ .+.+..++..++|+|.+++.
T Consensus 208 ~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL-~~~d~~v~~~a~~~L~~L~~ 286 (530)
T 1wa5_B 208 RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI-YSMDTETLVDACWAISYLSD 286 (530)
T ss_dssp HHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHT-TCCCHHHHHHHHHHHHHHHS
T ss_pred hHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHH-cCCCHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999977622334556678999999999 67788999999999999997
Q ss_pred CCCC-CchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHH
Q 014945 230 GKPQ-PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVG 308 (415)
Q Consensus 230 ~~~~-~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~ 308 (415)
..+. .......+++|.|+.+|.++++.++..++++|++++.+.+...+.+++.|+++.|+.+|.++++.++..|+++|+
T Consensus 287 ~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~ 366 (530)
T 1wa5_B 287 GPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTIS 366 (530)
T ss_dssp SCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 6432 222233589999999999999999999999999999988888888899999999999999999999999999999
Q ss_pred HhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhc-CCH--HHHHHHHHcCCHHHHHHHhccCCHHHH
Q 014945 309 NIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA-GNV--NQIQAIIEAGIIGPLVNLLLNAEFEIK 385 (415)
Q Consensus 309 nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~-~~~--~~~~~l~~~~~i~~L~~~l~~~~~~v~ 385 (415)
+++.+.+...+.+++.|+++.|+.++.++ ++.++..|+|+|+|++. +.+ +....+++.|+++.|+.++.+++++++
T Consensus 367 ~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~ 445 (530)
T 1wa5_B 367 NITAGNTEQIQAVIDANLIPPLVKLLEVA-EYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII 445 (530)
T ss_dssp HHTTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHH
T ss_pred HHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHH
Confidence 99998888888899999999999999988 99999999999999998 455 788899999999999999999999999
Q ss_pred HHHHHHHHHHhCCCC
Q 014945 386 KEAAWAISNATSGGS 400 (415)
Q Consensus 386 ~~a~~aL~nl~~~~~ 400 (415)
..|+++|.+++..++
T Consensus 446 ~~al~aL~~l~~~~~ 460 (530)
T 1wa5_B 446 EVTLDALENILKMGE 460 (530)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhh
Confidence 999999999997543
No 14
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=3.5e-36 Score=286.61 Aligned_cols=320 Identities=18% Similarity=0.216 Sum_probs=269.0
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhH
Q 014945 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 151 (415)
Q Consensus 72 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~ 151 (415)
.+|.+++.|+++++..+..|+++|+++...+ .+....+++.|++|.|+++|++++ +.++..|+|+|.|++.++++++.
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~-~~~~~~i~~~g~i~~Lv~lL~s~~-~~~~~~A~~aL~nLa~~~~~~k~ 80 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQD-ESAKQQVYQLGGICKLVDLLRSPN-QNVQQAAAGALRNLVFRSTTNKL 80 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSC-SSHHHHHHHTTHHHHHHHHTTSSC-HHHHHHHHHHHHHHHSSCHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCHHHHH
Confidence 6799999999999999999999999986532 333448889999999999999988 99999999999999998899999
Q ss_pred HHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhcc--------c-------hhHh
Q 014945 152 VVIDHGAVPIFVRLLS-SPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE--------H-------AKLS 215 (415)
Q Consensus 152 ~~~~~g~i~~L~~ll~-~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~--------~-------~~~~ 215 (415)
.+++.|++|.|+++|. ++++++++.++|+|+||+.+ +..+..+.+ |+++.|+.++.. . .+..
T Consensus 81 ~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~ 158 (457)
T 1xm9_A 81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPE 158 (457)
T ss_dssp HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHH
T ss_pred HHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHH
Confidence 9999999999999999 88999999999999999988 568888888 999999999931 1 2467
Q ss_pred HHHHHHHHHHHhhhCCCCCchhhh-h-chHHHHHHhhcC-----------------------------------------
Q 014945 216 MLRNATWTLSNFCRGKPQPLFEQT-R-PALPALERLIHS----------------------------------------- 252 (415)
Q Consensus 216 ~~~~a~~~l~~l~~~~~~~~~~~~-~-~~l~~l~~lL~~----------------------------------------- 252 (415)
++++++|+|.||+.. +....... . |++|.|+.+|++
T Consensus 159 v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~ 237 (457)
T 1xm9_A 159 VFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNA 237 (457)
T ss_dssp HHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC
T ss_pred HHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccc
Confidence 888999999999976 22111112 2 666666655542
Q ss_pred ----------------------------------------------------------CChhHHHHHHHHHHHhccCChH
Q 014945 253 ----------------------------------------------------------NDDEVLTDACWALSYLSDGTND 274 (415)
Q Consensus 253 ----------------------------------------------------------~d~~v~~~a~~~l~~l~~~~~~ 274 (415)
.++.+++.++|+|++++.+...
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~ 317 (457)
T 1xm9_A 238 RNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGL 317 (457)
T ss_dssp ----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSS
T ss_pred ccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCc
Confidence 2356777889999999976543
Q ss_pred H---H-HHHH-HcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCcc------chH
Q 014945 275 K---I-QAVI-EAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKK------SIK 343 (415)
Q Consensus 275 ~---~-~~~~-~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~------~v~ 343 (415)
. + +.++ +.|+++.|+.+|.+++..++..|+|+|+|++.+. ....++..|+++.|+.+|.++ ++ ++.
T Consensus 318 ~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~--~~~~~i~~~~i~~Lv~lL~~~-~~~~~~~~~v~ 394 (457)
T 1xm9_A 318 MSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP--LLHRVMGNQVFPEVTRLLTSH-TGNTSNSEDIL 394 (457)
T ss_dssp HHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG--GGHHHHHHHTHHHHHHTTTSC-CSCSTTHHHHH
T ss_pred chHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCH--HHHHHHHHhhhHHHHHhccCC-CCCCCCcHHHH
Confidence 2 2 3344 5799999999999999999999999999999854 345566778999999999887 43 588
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccC-CHHHHHHHHHHHHHHhCCC
Q 014945 344 KEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA-EFEIKKEAAWAISNATSGG 399 (415)
Q Consensus 344 ~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~-~~~v~~~a~~aL~nl~~~~ 399 (415)
..++++|+|+..+++++...+.+.|+++.|++++.++ +.++++.|+|.|.|+..+.
T Consensus 395 ~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~ 451 (457)
T 1xm9_A 395 SSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSK 451 (457)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSST
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcch
Confidence 8999999999998888899999999999999999999 8999999999999998663
No 15
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=3.5e-36 Score=297.37 Aligned_cols=326 Identities=14% Similarity=0.101 Sum_probs=279.4
Q ss_pred hccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCC----------------------------c---hhHHHhcCchHH
Q 014945 70 LESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSP----------------------------P---INEVIQSGVVPR 118 (415)
Q Consensus 70 ~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~----------------------------~---~~~~~~~g~i~~ 118 (415)
.+.+|.|+++|+++++.+++.|+++|.++....+.. . ++.+++.|++|.
T Consensus 420 ~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~ 499 (810)
T 3now_A 420 KASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTA 499 (810)
T ss_dssp HHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred cchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHH
Confidence 468999999999999999999999999998743111 0 256889999999
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCC-chhH-HHHH
Q 014945 119 FIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS-PKCR-DLVL 196 (415)
Q Consensus 119 L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~-~~~~-~~~~ 196 (415)
|+.++++++ +.+|.+|+|+|+|++. +++++..+++.|++|.|+.+|.++++..++.|+|+|+|++.+. +... ....
T Consensus 500 LV~LL~s~s-~~vqe~Aa~aL~NLA~-d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~ 577 (810)
T 3now_A 500 LCALAKTES-HNSQELIARVLNAVCG-LKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQR 577 (810)
T ss_dssp HHHHHTCCC-HHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHH
T ss_pred HHHHHcCCC-HHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchh
Confidence 999999988 9999999999999997 4789999999999999999999999999999999999998643 3210 0001
Q ss_pred hcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCC-CchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHH
Q 014945 197 SNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQ-PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDK 275 (415)
Q Consensus 197 ~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~-~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~ 275 (415)
..|++++|+.+|..+.+...+..++|+|.||+...+. .......+++|.|+.++.++++.++..|+++++|++.+++..
T Consensus 578 ~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~ 657 (810)
T 3now_A 578 SLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVI 657 (810)
T ss_dssp HHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHH
T ss_pred hhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHH
Confidence 2359999999995333445567899999999987522 223344689999999999999999999999999999877655
Q ss_pred HHHHHH-cCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHH-CCChHHHHHHhcCCCccchHHHHHHHHHHH
Q 014945 276 IQAVIE-AGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIIN-HQALPCLLDLLTQNYKKSIKKEACWTISNI 353 (415)
Q Consensus 276 ~~~~~~-~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~-~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl 353 (415)
..+++ .|.++.|+.++.+++..++..|+|+|+|++.+++...+.+++ .|+++.|+.++.++ +..+++.|+|+++|+
T Consensus 658 -~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~-d~~vq~~A~~aL~NL 735 (810)
T 3now_A 658 -KMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANP-SPAVQHRGIVIILNM 735 (810)
T ss_dssp -HHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCS-SHHHHHHHHHHHHHH
T ss_pred -HHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCC-CHHHHHHHHHHHHHH
Confidence 44554 689999999999999999999999999999988888899999 89999999999999 999999999999999
Q ss_pred hcCCHHHHHHHHHcCCHHHHHHHhccC---CHHHHHHHHHHHHHHhCCC
Q 014945 354 TAGNVNQIQAIIEAGIIGPLVNLLLNA---EFEIKKEAAWAISNATSGG 399 (415)
Q Consensus 354 ~~~~~~~~~~l~~~~~i~~L~~~l~~~---~~~v~~~a~~aL~nl~~~~ 399 (415)
+.+++++...+++.|+++.|+.+++.. +.++.+.|..+|.++...+
T Consensus 736 ~~~s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~g 784 (810)
T 3now_A 736 INAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERYR 784 (810)
T ss_dssp HTTCHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhCC
Confidence 998899999999999999999999765 6899999999999998543
No 16
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=7.5e-34 Score=271.96 Aligned_cols=325 Identities=16% Similarity=0.166 Sum_probs=270.8
Q ss_pred hccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchh
Q 014945 70 LESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN 149 (415)
Q Consensus 70 ~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~ 149 (415)
.|+||.|+++|.++++.++..|+++|+++....+.++...+++.|++|.|+++|.+..+.+++..|+++|.+++. +++.
T Consensus 89 ~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~-~~~~ 167 (584)
T 3l6x_A 89 LKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSS-HDSI 167 (584)
T ss_dssp TTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTT-SGGG
T ss_pred cCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-Cchh
Confidence 378999999999999999999999999997643356777899999999999999974338999999999999998 4788
Q ss_pred hHHHHhCCChHHHHHhhC------------------CCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCC-hHHHHHHhcc
Q 014945 150 TRVVIDHGAVPIFVRLLS------------------SPTDDVREQAVWALGNVAGDSPKCRDLVLSNGA-LMPLLAQFNE 210 (415)
Q Consensus 150 ~~~~~~~g~i~~L~~ll~------------------~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~-i~~L~~~l~~ 210 (415)
+..+++ ++++.|++++. ..++.++++|+++|.||+.+++..|..+.+.++ ++.|+.++..
T Consensus 168 k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~ 246 (584)
T 3l6x_A 168 KMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQA 246 (584)
T ss_dssp HHHHHH-HTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHH
T ss_pred hHHHHh-ccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHH
Confidence 888886 56999999771 246799999999999999999888888888654 6799999853
Q ss_pred c-----hhHhHHHHHHHHHHHhhhCC----CCC----------------------chhhhhchHHHHHHhhc-CCChhHH
Q 014945 211 H-----AKLSMLRNATWTLSNFCRGK----PQP----------------------LFEQTRPALPALERLIH-SNDDEVL 258 (415)
Q Consensus 211 ~-----~~~~~~~~a~~~l~~l~~~~----~~~----------------------~~~~~~~~l~~l~~lL~-~~d~~v~ 258 (415)
. .+...+++|+|+|.||+... +.. ......++++.++.+|. +.++.++
T Consensus 247 ~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~ 326 (584)
T 3l6x_A 247 EIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAIL 326 (584)
T ss_dssp HHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHH
T ss_pred hhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHH
Confidence 2 46678999999999999652 100 00111356788899995 5679999
Q ss_pred HHHHHHHHHhccCChH---HHH-HHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHh
Q 014945 259 TDACWALSYLSDGTND---KIQ-AVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLL 334 (415)
Q Consensus 259 ~~a~~~l~~l~~~~~~---~~~-~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll 334 (415)
++|+|+|.||+.+... ..+ .+.+.++++.|+.+|.+++..++..|+++|+|++.+... +.++..|+++.|+.+|
T Consensus 327 E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~--~~~I~~g~ip~LV~LL 404 (584)
T 3l6x_A 327 EASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARN--KELIGKHAIPNLVKNL 404 (584)
T ss_dssp HHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSC--HHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhH--HHHHHhCCHHHHHHHh
Confidence 9999999999876522 223 334468899999999999999999999999999987653 3456789999999999
Q ss_pred cCCC-------ccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccC--CHHHHHHHHHHHHHHhCC
Q 014945 335 TQNY-------KKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--EFEIKKEAAWAISNATSG 398 (415)
Q Consensus 335 ~~~~-------~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~--~~~v~~~a~~aL~nl~~~ 398 (415)
.++. ...+...|||+|+||+.+++++.+.+++.|+++.|+.++.++ .+.+++.|+|+|+|+..+
T Consensus 405 ~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~ 477 (584)
T 3l6x_A 405 PGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGY 477 (584)
T ss_dssp SSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTS
T ss_pred cCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcC
Confidence 8762 246789999999999999999999999999999999999986 789999999999999975
No 17
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=3.9e-35 Score=280.85 Aligned_cols=333 Identities=19% Similarity=0.220 Sum_probs=271.9
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCC-Cchh
Q 014945 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASG-TSEN 149 (415)
Q Consensus 71 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~-~~~~ 149 (415)
..++.++++|.++++.++..|+++|.++.... .++...+++.|+||.|+++|++++ +.++..|+|+|.||+.+ ++++
T Consensus 48 ~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~-~~~k~~V~~~G~Ip~LV~LL~s~~-~~vq~~Aa~AL~nLa~~~~~~n 125 (584)
T 3l6x_A 48 PELPEVIAMLGFRLDAVKSNAAAYLQHLCYRN-DKVKTDVRKLKGIPVLVGLLDHPK-KEVHLGACGALKNISFGRDQDN 125 (584)
T ss_dssp CCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTHHHHHHHGGGCSS-HHHHHHHHHHHHHHTSSSCHHH
T ss_pred ccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHcCCcHHHHHHHCCCC-HHHHHHHHHHHHHHHccCCHHH
Confidence 58999999999999999999999999997654 566778899999999999999998 99999999999999985 6899
Q ss_pred hHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhc-----------------cc
Q 014945 150 TRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN-----------------EH 211 (415)
Q Consensus 150 ~~~~~~~g~i~~L~~ll~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~-----------------~~ 211 (415)
+..+++.|+|+.|+.+|.+ .+..+++.++++|+||+.. +..+..+.+ ++++.|+.++. ..
T Consensus 126 k~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~-~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~ 203 (584)
T 3l6x_A 126 KIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSH-DSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHI 203 (584)
T ss_dssp HHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTS-GGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CC
T ss_pred HHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-chhhHHHHh-ccHHHHHHHHhccccccccccccccccccc
Confidence 9999999999999999997 6789999999999999985 457777775 57999999872 12
Q ss_pred hhHhHHHHHHHHHHHhhhCCCC-Cchhh-hhchHHHHHHhhcC------CChhHHHHHHHHHHHhccCChHH--------
Q 014945 212 AKLSMLRNATWTLSNFCRGKPQ-PLFEQ-TRPALPALERLIHS------NDDEVLTDACWALSYLSDGTNDK-------- 275 (415)
Q Consensus 212 ~~~~~~~~a~~~l~~l~~~~~~-~~~~~-~~~~l~~l~~lL~~------~d~~v~~~a~~~l~~l~~~~~~~-------- 275 (415)
.+..++++++|+|.||+...+. ..... ..++++.|+.++++ .+....++++|+|.||+......
T Consensus 204 ~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~ 283 (584)
T 3l6x_A 204 EWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQ 283 (584)
T ss_dssp CCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--
T ss_pred ccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhh
Confidence 2578999999999999987533 22222 25778899999864 46789999999999998652111
Q ss_pred -----------------HHHHHHcCcHHHHHHhcC-CCChhhHHHHHHHHHHhhcCChH---HHH-HHHHCCChHHHHHH
Q 014945 276 -----------------IQAVIEAGVCPRLVELLR-HPSPSVLIPALRTVGNIVTGDDM---QTQ-CIINHQALPCLLDL 333 (415)
Q Consensus 276 -----------------~~~~~~~~~i~~L~~lL~-~~~~~v~~~a~~~l~nl~~~~~~---~~~-~~~~~~~l~~L~~l 333 (415)
++.+...++++.|+.+|. +.++.+++.|+++|+|++.+... ..+ .+.+.+++|.|+.+
T Consensus 284 ~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~L 363 (584)
T 3l6x_A 284 EAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADL 363 (584)
T ss_dssp ------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHG
T ss_pred hhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHH
Confidence 112233355778889995 56789999999999999987632 223 33346889999999
Q ss_pred hcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccC--------CHHHHHHHHHHHHHHhCCCCHHHHH
Q 014945 334 LTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--------EFEIKKEAAWAISNATSGGSNEQIK 405 (415)
Q Consensus 334 l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~--------~~~v~~~a~~aL~nl~~~~~~~~~~ 405 (415)
|.++ +..+++.|+|+|+|++.+.. .+.++..|+++.|+.+|.++ ..+++..|+++|.|++.. ++++.+
T Consensus 364 L~s~-~~~v~~~A~~aL~nLs~~~~--~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~-~~~~~~ 439 (584)
T 3l6x_A 364 LTNE-HERVVKAASGALRNLAVDAR--NKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAE-NLEAAK 439 (584)
T ss_dssp GGCS-CHHHHHHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTT-CHHHHH
T ss_pred HcCC-CHHHHHHHHHHHHHHhCChh--HHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcC-CHHHHH
Confidence 9999 99999999999999998643 23456889999999999976 367899999999999976 667777
Q ss_pred HHHHHhhCC
Q 014945 406 YKFFYVSRT 414 (415)
Q Consensus 406 ~l~~~~~~g 414 (415)
.+ ++.|
T Consensus 440 ~I---~~~g 445 (584)
T 3l6x_A 440 KL---RETQ 445 (584)
T ss_dssp HH---HHTT
T ss_pred HH---HHCC
Confidence 77 6766
No 18
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=100.00 E-value=9.7e-33 Score=269.23 Aligned_cols=327 Identities=20% Similarity=0.246 Sum_probs=276.0
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhh
Q 014945 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 150 (415)
Q Consensus 71 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~ 150 (415)
+.++.|++.|+++++.++..|+++|.++.... ......+.+.|++|.|++++.+++ ++++..++.+|.+++.++++.+
T Consensus 101 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~L~~ll~~~~-~~~~~~~~~~L~~la~~~~~~~ 178 (529)
T 1jdh_A 101 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESK 178 (529)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHC-TTHHHHHHHHTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-cchHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHHHHhCCHHHH
Confidence 78999999999999999999999999998764 455667778999999999999988 8999999999999999889999
Q ss_pred HHHHhCCChHHHHHhhCCC-CHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhh
Q 014945 151 RVVIDHGAVPIFVRLLSSP-TDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 229 (415)
Q Consensus 151 ~~~~~~g~i~~L~~ll~~~-~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~ 229 (415)
..+.+.|+++.|+.++.++ ....+..++.+|.+++... ..+..+.+.|+++.|+.++ .+.+..++..++|++.+++.
T Consensus 179 ~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~g~~~~L~~ll-~~~~~~~~~~a~~~L~~l~~ 256 (529)
T 1jdh_A 179 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS-SNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSD 256 (529)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTST-THHHHHHHTTHHHHHHTTT-TSSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCc-ccHHHHHHCCCHHHHHHHH-hCCChHHHHHHHHHHHHHhc
Confidence 9999999999999999864 4567788999999999754 5788999999999999999 66688999999999999998
Q ss_pred CCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCC--CChhhHHHHHHHH
Q 014945 230 GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH--PSPSVLIPALRTV 307 (415)
Q Consensus 230 ~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~--~~~~v~~~a~~~l 307 (415)
..+.. ....+++|.|++++.+++++++..++|+|++++.++++....+.+.|+++.|+.+|.+ +++.++..++++|
T Consensus 257 ~~~~~--~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L 334 (529)
T 1jdh_A 257 AATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 334 (529)
T ss_dssp TCTTC--SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CChhh--HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHH
Confidence 75332 2346899999999999999999999999999999888788889999999999999975 3478999999999
Q ss_pred HHhhcCChH---HHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHH
Q 014945 308 GNIVTGDDM---QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEI 384 (415)
Q Consensus 308 ~nl~~~~~~---~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v 384 (415)
+|++.+.+. ....+.+.|+++.|..++.++.++.+++.++|+|+|++.+... ...+.+.|+++.|+.++.++++++
T Consensus 335 ~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~-~~~~~~~~~i~~L~~ll~~~~~~v 413 (529)
T 1jdh_A 335 RHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN-HAPLREQGAIPRLVQLLVRAHQDT 413 (529)
T ss_dssp HHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGG-HHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhh-hHHHHHcCCHHHHHHHHHHHhHHH
Confidence 999986543 3567889999999999999883359999999999999986544 478889999999999999999999
Q ss_pred HHHHHHHHHH--HhCCCCHHHH
Q 014945 385 KKEAAWAISN--ATSGGSNEQI 404 (415)
Q Consensus 385 ~~~a~~aL~n--l~~~~~~~~~ 404 (415)
|++|+|++.| +..+++++++
T Consensus 414 ~~~a~~~l~n~~~~~~~~~~~i 435 (529)
T 1jdh_A 414 QRRTSMGGTQQQFVEGVRMEEI 435 (529)
T ss_dssp C-----------CBTTBCHHHH
T ss_pred HHHHhcccCchhhhccccHHHH
Confidence 9999999998 5555554443
No 19
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=100.00 E-value=3.1e-33 Score=254.91 Aligned_cols=271 Identities=19% Similarity=0.193 Sum_probs=235.4
Q ss_pred hHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCC-----------CCHHHHHHHHHHHHHhcCCCchhHHHHHh
Q 014945 129 PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-----------PTDDVREQAVWALGNVAGDSPKCRDLVLS 197 (415)
Q Consensus 129 ~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-----------~~~~v~~~a~~~L~nl~~~~~~~~~~~~~ 197 (415)
...+..|+|+|.|++.+ ++++..+++.|+++.|+.+|.. .++.++..|+|+|.||+.+++..+..+..
T Consensus 46 ~~~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~ 124 (354)
T 3nmw_A 46 EHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCS 124 (354)
T ss_dssp GGTHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45566899999999997 8999999999999999999942 24679999999999999888777777754
Q ss_pred -cCChHHHHHHhccchhHhHHHHHHHHHHHhhhCC--CCCchhhhhchHHHHHHhh-cCCChhHHHHHHHHHHHhccCCh
Q 014945 198 -NGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK--PQPLFEQTRPALPALERLI-HSNDDEVLTDACWALSYLSDGTN 273 (415)
Q Consensus 198 -~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~--~~~~~~~~~~~l~~l~~lL-~~~d~~v~~~a~~~l~~l~~~~~ 273 (415)
.|+++.|+.+| .++++.++..++|+|.||+... .........|++|.|+++| .+.+++++..++++|.+|+...+
T Consensus 125 ~~GaIp~LV~LL-~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~ 203 (354)
T 3nmw_A 125 MKGCMRALVAQL-KSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCT 203 (354)
T ss_dssp CHHHHHHHHHGG-GCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCH
T ss_pred cCCcHHHHHHHH-CCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccCh
Confidence 45599999999 7788999999999999999752 2223334478999999975 66789999999999999998665
Q ss_pred HHHHHHH-HcCcHHHHHHhcCCCCh----hhHHHHHHHHHHhhc---CChHHHHHHHHCCChHHHHHHhcCCCccchHHH
Q 014945 274 DKIQAVI-EAGVCPRLVELLRHPSP----SVLIPALRTVGNIVT---GDDMQTQCIINHQALPCLLDLLTQNYKKSIKKE 345 (415)
Q Consensus 274 ~~~~~~~-~~~~i~~L~~lL~~~~~----~v~~~a~~~l~nl~~---~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~ 345 (415)
+....+. ..|+++.|+.+|.+.++ .++..|+++|.|++. +.++.++.+.+.|+++.|+.+|.++ +..+++.
T Consensus 204 ~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~ 282 (354)
T 3nmw_A 204 ENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSH-SLTIVSN 282 (354)
T ss_dssp HHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCS-CHHHHHH
T ss_pred hhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCC-ChHHHHH
Confidence 5445555 68999999999987654 489999999999997 7888899999999999999999998 9999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCHH
Q 014945 346 ACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNE 402 (415)
Q Consensus 346 a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~ 402 (415)
|+|+|+|++.+++++++.+++.|+++.|++++.++++++++.|+|+|.|++.+.+..
T Consensus 283 A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~~ 339 (354)
T 3nmw_A 283 ACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAK 339 (354)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCGG
T ss_pred HHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 999999999889999999999999999999999999999999999999999885543
No 20
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=3.4e-33 Score=266.06 Aligned_cols=281 Identities=19% Similarity=0.207 Sum_probs=238.7
Q ss_pred chHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHH
Q 014945 115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDL 194 (415)
Q Consensus 115 ~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 194 (415)
.+|.|+.+|++++ ++++..|+++|.+++.+++..+..+.+.|++|.|+.+|.++++.++..|+|+|.||+.+++..+..
T Consensus 3 ~l~~lv~~L~s~~-~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~ 81 (457)
T 1xm9_A 3 TIPKAVQYLSSQD-EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE 81 (457)
T ss_dssp CHHHHHHHHHSSC-THHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred CHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 4899999999998 899999999999999887788889999999999999999999999999999999999988889999
Q ss_pred HHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhc--------C--------CChhHH
Q 014945 195 VLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH--------S--------NDDEVL 258 (415)
Q Consensus 195 ~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~--------~--------~d~~v~ 258 (415)
+.+.|+++.|+.+|..+.+..+++.++|+|.||+..+ ........+++|.|+.+|. + .++.+.
T Consensus 82 i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~-~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~ 160 (457)
T 1xm9_A 82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTD-ELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF 160 (457)
T ss_dssp HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSS-STHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred HHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCH-HhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHH
Confidence 9999999999999954778999999999999999884 3333333499999999993 2 356778
Q ss_pred HHHHHHHHHhccCChHHHHHHHHc-CcHHHHHHhcCC------CChhhHHHHHHHHHHhhcCC-----------------
Q 014945 259 TDACWALSYLSDGTNDKIQAVIEA-GVCPRLVELLRH------PSPSVLIPALRTVGNIVTGD----------------- 314 (415)
Q Consensus 259 ~~a~~~l~~l~~~~~~~~~~~~~~-~~i~~L~~lL~~------~~~~v~~~a~~~l~nl~~~~----------------- 314 (415)
..++|+|.|++.. ++..+.+.+. |+++.|+.+|.+ .+..+...++.+|.|++...
T Consensus 161 ~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~ 239 (457)
T 1xm9_A 161 FNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARN 239 (457)
T ss_dssp HHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC--
T ss_pred HHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccc
Confidence 8999999999987 6677778887 999999999975 45678888999999986321
Q ss_pred ---------------------------------hHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHH--
Q 014945 315 ---------------------------------DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVN-- 359 (415)
Q Consensus 315 ---------------------------------~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~-- 359 (415)
+...+.+++.|+++.++.+|.++.++.+++.|+|+|+|++.++..
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~ 319 (457)
T 1xm9_A 240 AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMS 319 (457)
T ss_dssp --------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHH
T ss_pred ccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcch
Confidence 112334456678899999998775789999999999999986432
Q ss_pred -HH-HHHH-HcCCHHHHHHHhccCCHHHHHHHHHHHHHHhCC
Q 014945 360 -QI-QAII-EAGIIGPLVNLLLNAEFEIKKEAAWAISNATSG 398 (415)
Q Consensus 360 -~~-~~l~-~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~ 398 (415)
.+ +..+ +.|++|.|+++|.+++++++++|+|+|.|++.+
T Consensus 320 ~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~ 361 (457)
T 1xm9_A 320 SGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH 361 (457)
T ss_dssp HHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcC
Confidence 23 4445 689999999999999999999999999999975
No 21
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=100.00 E-value=3.4e-32 Score=270.94 Aligned_cols=327 Identities=19% Similarity=0.242 Sum_probs=276.2
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhh
Q 014945 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 150 (415)
Q Consensus 71 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~ 150 (415)
+.++.|+++|+++++.++..|+++|.++.+.. ......+.+.|++|.|+++|++++ +.++..++.+|.+++.++++.+
T Consensus 98 g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~-~~~~~~v~~~g~i~~Lv~lL~~~~-~~~~~~a~~~L~~La~~~~~~~ 175 (644)
T 2z6h_A 98 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESK 175 (644)
T ss_dssp THHHHHHHHTTCSSHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCc-chhHHHHHHCCChHHHHHHHCcCC-HHHHHHHHHHHHHHHhcCcHHH
Confidence 68999999999999999999999999998764 556667888999999999999988 8888889999999998889999
Q ss_pred HHHHhCCChHHHHHhhCCC-CHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhh
Q 014945 151 RVVIDHGAVPIFVRLLSSP-TDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 229 (415)
Q Consensus 151 ~~~~~~g~i~~L~~ll~~~-~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~ 229 (415)
..+.+.|+++.|+.++.+. ...++..++.+|.|++.. +..+..+.+.|+++.|+.++ .+.+..++..++|+|.+++.
T Consensus 176 ~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~-~~~~~~l~~~g~l~~L~~ll-~~~~~~~~~~a~~~L~nL~~ 253 (644)
T 2z6h_A 176 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSD 253 (644)
T ss_dssp HHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTC-TTHHHHHHHTTHHHHHHTTT-TCSCHHHHHHHHHHHHHHGG
T ss_pred HHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcC-cccHHHHHHCCCHHHHHHHH-hcCCHHHHHHHHHHHHHHhh
Confidence 9999999999999999875 467889999999999965 45789999999999999999 66688999999999999998
Q ss_pred CCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCC--ChhhHHHHHHHH
Q 014945 230 GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP--SPSVLIPALRTV 307 (415)
Q Consensus 230 ~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~--~~~v~~~a~~~l 307 (415)
..+. .....+++|.|+.++.+++++++..++|+|++++..++...+.+.+.|+++.|+.+|.+. .+.++..|+++|
T Consensus 254 ~~~~--~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL 331 (644)
T 2z6h_A 254 AATK--QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 331 (644)
T ss_dssp GCTT--CCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cchh--hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHH
Confidence 7533 234468999999999999999999999999999998888788899999999999999763 379999999999
Q ss_pred HHhhcCCh--HH-HHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHH
Q 014945 308 GNIVTGDD--MQ-TQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEI 384 (415)
Q Consensus 308 ~nl~~~~~--~~-~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v 384 (415)
+|++...+ .. ...+.+.|+++.|+.+|.++.++.+++.|+|+|+|++.+... ...+++.|+++.|+.++.++++++
T Consensus 332 ~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~-~~~i~~~~~i~~Lv~lL~~~~~~v 410 (644)
T 2z6h_A 332 RHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN-HAPLREQGAIPRLVQLLVRAHQDT 410 (644)
T ss_dssp HHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGG-HHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHH-HHHHHHcCCHHHHHHHHhccchhh
Confidence 99997543 22 334778899999999999883469999999999999987554 478889999999999999888888
Q ss_pred HHHHHHHHHH--HhCCCCHHHH
Q 014945 385 KKEAAWAISN--ATSGGSNEQI 404 (415)
Q Consensus 385 ~~~a~~aL~n--l~~~~~~~~~ 404 (415)
|++|+|+++| +..+++.+++
T Consensus 411 r~~a~~al~n~~~~~~~~~~~v 432 (644)
T 2z6h_A 411 QRRTSMGGTQQQFVEGVRMEEI 432 (644)
T ss_dssp TTC----------CCSSCHHHH
T ss_pred hhHhhhccccchhcccccHHHH
Confidence 7777777777 5555444444
No 22
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=100.00 E-value=5.6e-33 Score=253.17 Aligned_cols=273 Identities=19% Similarity=0.168 Sum_probs=236.2
Q ss_pred HHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCC----------CChHHHHHHHHHHHHHhCCCchhhHHHH
Q 014945 85 RNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRD----------DFPQLQFEAAWALTNIASGTSENTRVVI 154 (415)
Q Consensus 85 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~----------~~~~i~~~a~~~L~~l~~~~~~~~~~~~ 154 (415)
...+..|+++|.++.. . .+..+.+++.|+++.|+.+|..+ .++.++..|+|+|.|++.+++..+..+.
T Consensus 46 ~~~~~~A~~aL~nls~-d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~ 123 (354)
T 3nmw_A 46 EHQICPAVCVLMKLSF-D-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLC 123 (354)
T ss_dssp GGTHHHHHHHHHHHHT-S-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcC-C-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3455689999999954 3 57778899999999999999521 1268999999999999998777777775
Q ss_pred h-CCChHHHHHhhCCCCHHHHHHHHHHHHHhcCC-CchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCC-
Q 014945 155 D-HGAVPIFVRLLSSPTDDVREQAVWALGNVAGD-SPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK- 231 (415)
Q Consensus 155 ~-~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~-~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~- 231 (415)
. .|+||.|+.+|.++++++++.|+|+|+||+.. ++..+..+.+.|++++|+.+|..+.+..+++.++++|.||+...
T Consensus 124 ~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~ 203 (354)
T 3nmw_A 124 SMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCT 203 (354)
T ss_dssp HCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCH
T ss_pred HcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccCh
Confidence 5 46699999999999999999999999999985 66789999999999999998756678889999999999999843
Q ss_pred CCCchhh-hhchHHHHHHhhcCCCh----hHHHHHHHHHHHhcc---CChHHHHHHHHcCcHHHHHHhcCCCChhhHHHH
Q 014945 232 PQPLFEQ-TRPALPALERLIHSNDD----EVLTDACWALSYLSD---GTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPA 303 (415)
Q Consensus 232 ~~~~~~~-~~~~l~~l~~lL~~~d~----~v~~~a~~~l~~l~~---~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a 303 (415)
....... ..+++|.|+.+|.+.++ +++..++|+|.+++. ..++..+.+.+.|+++.|+.+|.+.+..++..|
T Consensus 204 ~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A 283 (354)
T 3nmw_A 204 ENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNA 283 (354)
T ss_dssp HHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHH
T ss_pred hhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHH
Confidence 2222223 57999999999987654 599999999999997 677777889999999999999999999999999
Q ss_pred HHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHH
Q 014945 304 LRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQ 360 (415)
Q Consensus 304 ~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~ 360 (415)
+++|+|++.+++++.+.+.+.|++|.|+.++.++ ++.+++.|+|+|.|++.+++..
T Consensus 284 ~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~-~~~i~~~A~~aL~nL~~~~~~~ 339 (354)
T 3nmw_A 284 CGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSK-HKMIAMGSAAALRNLMANRPAK 339 (354)
T ss_dssp HHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCS-SHHHHHHHHHHHHHHHTTCCGG
T ss_pred HHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHcCCHHH
Confidence 9999999988888999999999999999999998 9999999999999999976654
No 23
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=100.00 E-value=3.2e-31 Score=258.43 Aligned_cols=322 Identities=16% Similarity=0.164 Sum_probs=281.2
Q ss_pred ccHHHHHHhhcC-CCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchh
Q 014945 71 ESLPAMVAGVWS-DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN 149 (415)
Q Consensus 71 ~~i~~l~~~l~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~ 149 (415)
+.++.+++.|.+ +++..+..|+..|+++... .++...+.+.|++|.|++++++++ +.++..|+++|.+++.+++..
T Consensus 59 ~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~--~~~~~~i~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~ 135 (529)
T 1jdh_A 59 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHH--REGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEGA 135 (529)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS--HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHCTTH
T ss_pred chHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC--chhHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcch
Confidence 578999999975 4899999999999998543 356777889999999999999988 999999999999999987788
Q ss_pred hHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhh
Q 014945 150 TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 229 (415)
Q Consensus 150 ~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~ 229 (415)
+..+.+.|+++.|+.++.+++..++..++.+|.+++..++..+..+.+.|+++.|+.++....+......++.++.+++.
T Consensus 136 ~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~ 215 (529)
T 1jdh_A 136 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 215 (529)
T ss_dssp HHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhc
Confidence 88888999999999999999999999999999999998888999999999999999999666667788889999999997
Q ss_pred CCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHH
Q 014945 230 GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 309 (415)
Q Consensus 230 ~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~n 309 (415)
.+.........+++|.++.++.++++.++..++|++.+++...+... ...|+++.|+.+|.++++.++..++++|++
T Consensus 216 ~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~---~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 292 (529)
T 1jdh_A 216 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE---GMEGLLGTLVQLLGSDDINVVTCAAGILSN 292 (529)
T ss_dssp STTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCS---CCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhH---HHHhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 64433344447899999999999999999999999999997654321 123789999999999999999999999999
Q ss_pred hhcCChHHHHHHHHCCChHHHHHHhcCC-CccchHHHHHHHHHHHhcCCHH---HHHHHHHcCCHHHHHHHhccCC-HHH
Q 014945 310 IVTGDDMQTQCIINHQALPCLLDLLTQN-YKKSIKKEACWTISNITAGNVN---QIQAIIEAGIIGPLVNLLLNAE-FEI 384 (415)
Q Consensus 310 l~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~~v~~~a~~~l~nl~~~~~~---~~~~l~~~~~i~~L~~~l~~~~-~~v 384 (415)
++.+++.....+.+.|+++.|+.++.+. .++.++..|+++|+|++.++++ ....+.+.|+++.|+.+|.+++ +.+
T Consensus 293 L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v 372 (529)
T 1jdh_A 293 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPL 372 (529)
T ss_dssp HTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHH
T ss_pred HhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHH
Confidence 9998888889999999999999999764 1379999999999999986433 4567889999999999999876 599
Q ss_pred HHHHHHHHHHHhCC
Q 014945 385 KKEAAWAISNATSG 398 (415)
Q Consensus 385 ~~~a~~aL~nl~~~ 398 (415)
++.|+|+|+|++.+
T Consensus 373 ~~~a~~~l~nl~~~ 386 (529)
T 1jdh_A 373 IKATVGLIRNLALC 386 (529)
T ss_dssp HHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999999975
No 24
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.98 E-value=2.9e-30 Score=261.00 Aligned_cols=317 Identities=19% Similarity=0.248 Sum_probs=269.1
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhh
Q 014945 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 150 (415)
Q Consensus 71 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~ 150 (415)
+.++.|+++|+++++.++..|+++|.++.... ......+.+.|+++.|+.+|.+++ ..++..++.+|.+++.++++.+
T Consensus 234 g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~-~~~~~~v~~~g~v~~Lv~lL~~~~-~~v~~~a~~aL~~La~~~~e~~ 311 (780)
T 2z6g_A 234 GGIPALVNMLGSPVDSVLFHAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESK 311 (780)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCC-hhhHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHHHhcCChHHH
Confidence 68999999999999999999999999998764 455566778999999999999987 8999999999999999888999
Q ss_pred HHHHhCCChHHHHHhhCCCC-HHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhh
Q 014945 151 RVVIDHGAVPIFVRLLSSPT-DDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 229 (415)
Q Consensus 151 ~~~~~~g~i~~L~~ll~~~~-~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~ 229 (415)
..+.+.|+++.|+.++.+.+ ...++.++.+|.+++... ..+..+.+.|+++.|+.++ .+.+..++..++|+|.+++.
T Consensus 312 ~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~-~~~~~i~~~g~l~~Ll~lL-~~~~~~~~~~a~~~L~~L~~ 389 (780)
T 2z6g_A 312 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS-SNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSD 389 (780)
T ss_dssp HHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTST-THHHHHHHTTHHHHHGGGT-TCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCh-HHHHHHHHhchHHHHHHHH-cCCchHHHHHHHHHHHHHhc
Confidence 99999999999999998754 456778999999999754 4688899999999999999 66678899999999999998
Q ss_pred CCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCC-C-hhhHHHHHHHH
Q 014945 230 GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP-S-PSVLIPALRTV 307 (415)
Q Consensus 230 ~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~-~-~~v~~~a~~~l 307 (415)
..+. .....+++|.|+.+|.+.++.++..++|+|++|+...+.....+++.|+++.|+.+|.+. + +.++..|+++|
T Consensus 390 ~~~~--~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL 467 (780)
T 2z6g_A 390 AATK--QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 467 (780)
T ss_dssp TCTT--CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cchh--hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 7633 223468999999999999999999999999999998888888899999999999999753 3 48999999999
Q ss_pred HHhhcCChH---HHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHH
Q 014945 308 GNIVTGDDM---QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEI 384 (415)
Q Consensus 308 ~nl~~~~~~---~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v 384 (415)
+||+...++ ....+.+.|+++.|+.+|.++..+.+++.|+|+|+|++.+. .....+.+.|+++.|+.+|.++++++
T Consensus 468 ~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~ 546 (780)
T 2z6g_A 468 RHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP-ANHAPLREQGAIPRLVQLLVRAHQDT 546 (780)
T ss_dssp HHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSH-HHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCH-HHHHHHHHCCCHHHHHHHHHhcchhH
Confidence 999876543 23467888999999999998833499999999999999864 44578889999999999998876666
Q ss_pred HHHHHHHHHH
Q 014945 385 KKEAAWAISN 394 (415)
Q Consensus 385 ~~~a~~aL~n 394 (415)
+++|+|+++|
T Consensus 547 ~~~aa~al~n 556 (780)
T 2z6g_A 547 QRRTSMGGTQ 556 (780)
T ss_dssp HHTTC-----
T ss_pred HHHHhhcccc
Confidence 6655555555
No 25
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.97 E-value=5.8e-30 Score=224.99 Aligned_cols=243 Identities=32% Similarity=0.512 Sum_probs=219.7
Q ss_pred CchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHH
Q 014945 114 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRD 193 (415)
Q Consensus 114 g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~ 193 (415)
|.+|.|+++|.+++ ++++..|+++|.+++.++++.+..+.+.|+++.|+.++.++++.++..++++|++++.+++..+.
T Consensus 2 ~~i~~L~~~L~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 80 (252)
T 4hxt_A 2 NDVEKLVKLLTSTD-SETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK 80 (252)
T ss_dssp CHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred CcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHH
Confidence 57899999999998 99999999999999998888999999999999999999999999999999999999998888888
Q ss_pred HHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCCh
Q 014945 194 LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTN 273 (415)
Q Consensus 194 ~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~ 273 (415)
.+.+.|+++.++.++ .+++++++..++++|.+++...+
T Consensus 81 ~~~~~~~i~~l~~ll------------------------------------------~~~~~~v~~~a~~~L~~l~~~~~ 118 (252)
T 4hxt_A 81 AIVDAGGVEVLVKLL------------------------------------------TSTDSEVQKEAARALANIASGPD 118 (252)
T ss_dssp HHHHTTHHHHHHHHT------------------------------------------TCSSHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHCCCHHHHHHHH------------------------------------------cCCCHHHHHHHHHHHHHHHcCCH
Confidence 887776666655555 44556677777777777776666
Q ss_pred HHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHH
Q 014945 274 DKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNI 353 (415)
Q Consensus 274 ~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl 353 (415)
+....+.+.|+++.|+.+|.++++.++..++++|++++.+.+.....+.+.|+++.|+.++.++ ++.++..|+|+|+|+
T Consensus 119 ~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l 197 (252)
T 4hxt_A 119 EAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTST-DSEVQKEAARALANI 197 (252)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCC-CHHHHHHHHHHHHHH
Confidence 6667788899999999999999999999999999999999888888899999999999999998 999999999999999
Q ss_pred hcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhCCCC
Q 014945 354 TAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGS 400 (415)
Q Consensus 354 ~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~ 400 (415)
+.++++....+.+.|+++.|++++.+++++++..|+|+|.|++....
T Consensus 198 ~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 244 (252)
T 4hxt_A 198 ASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGGW 244 (252)
T ss_dssp TTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCB
T ss_pred HcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCC
Confidence 99889999999999999999999999999999999999999997653
No 26
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.97 E-value=3.3e-30 Score=256.65 Aligned_cols=322 Identities=16% Similarity=0.158 Sum_probs=279.1
Q ss_pred ccHHHHHHhhcCC-CHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchh
Q 014945 71 ESLPAMVAGVWSD-DRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN 149 (415)
Q Consensus 71 ~~i~~l~~~l~~~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~ 149 (415)
+.++.+++.|.++ ++..+..|+.+|+++... .+....+.+.|+++.|+++|++++ +.++..|+++|.+++.+.+..
T Consensus 56 ~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~--~~~~~~i~~~g~i~~Lv~lL~~~~-~~v~~~A~~aL~nL~~~~~~~ 132 (644)
T 2z6h_A 56 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHH--REGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEGA 132 (644)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS--HHHHHHHHTTTHHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHSTTH
T ss_pred ChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC--hhhHHHHHHcCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHhCcchh
Confidence 4689999999864 899999999999987543 346677889999999999999988 999999999999999987778
Q ss_pred hHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhh
Q 014945 150 TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 229 (415)
Q Consensus 150 ~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~ 229 (415)
+..+.+.|+++.|+.+|.++++.++..++.+|.+++...+..+..+.+.|+++.|+.++........+..++.+|.+++.
T Consensus 133 ~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~ 212 (644)
T 2z6h_A 133 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 212 (644)
T ss_dssp HHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc
Confidence 88888999999999999999999999999999999988888899999999999999999666667788999999999997
Q ss_pred CCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHH
Q 014945 230 GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 309 (415)
Q Consensus 230 ~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~n 309 (415)
...........++++.|+.++.+.+..++..++|+|.+++...... ....++++.|+.+|.+.++.++..++++|++
T Consensus 213 ~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~---~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~ 289 (644)
T 2z6h_A 213 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSN 289 (644)
T ss_dssp CTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTC---CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 6444444445789999999999999999999999999999765332 1123689999999999999999999999999
Q ss_pred hhcCChHHHHHHHHCCChHHHHHHhcCCCc-cchHHHHHHHHHHHhcCCH--HH-HHHHHHcCCHHHHHHHhccCC-HHH
Q 014945 310 IVTGDDMQTQCIINHQALPCLLDLLTQNYK-KSIKKEACWTISNITAGNV--NQ-IQAIIEAGIIGPLVNLLLNAE-FEI 384 (415)
Q Consensus 310 l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~-~~v~~~a~~~l~nl~~~~~--~~-~~~l~~~~~i~~L~~~l~~~~-~~v 384 (415)
++.+++.....+.+.|+++.|+.++.+..+ +.++..|+++|+|++..++ +. ...+++.|+++.|+++|.+++ +.+
T Consensus 290 L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v 369 (644)
T 2z6h_A 290 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPL 369 (644)
T ss_dssp HHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHH
T ss_pred HHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHH
Confidence 999888888999999999999999987523 6999999999999997433 23 334778999999999999865 799
Q ss_pred HHHHHHHHHHHhCC
Q 014945 385 KKEAAWAISNATSG 398 (415)
Q Consensus 385 ~~~a~~aL~nl~~~ 398 (415)
++.|+|+|+|++.+
T Consensus 370 ~~~a~~~L~nLa~~ 383 (644)
T 2z6h_A 370 IKATVGLIRNLALC 383 (644)
T ss_dssp HHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHccC
Confidence 99999999999975
No 27
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.97 E-value=1.1e-29 Score=256.76 Aligned_cols=322 Identities=16% Similarity=0.162 Sum_probs=277.9
Q ss_pred ccHHHHHHhhcCC-CHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchh
Q 014945 71 ESLPAMVAGVWSD-DRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN 149 (415)
Q Consensus 71 ~~i~~l~~~l~~~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~ 149 (415)
+.++.|++.|.++ ++..+..|+.+|+++... ..+...+.+.|+++.|+.+|++++ +.++..|+++|.+++.+++..
T Consensus 192 ~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~--~~~~~~i~~~g~I~~Lv~lL~~~~-~~v~~~A~~aL~nLa~~~~~~ 268 (780)
T 2z6g_A 192 QMVSAIVRTMQNTNDVETARCTSGTLHNLSHH--REGLLAIFKSGGIPALVNMLGSPV-DSVLFHAITTLHNLLLHQEGA 268 (780)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS--HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHSTTH
T ss_pred ChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC--chhHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhCCChhh
Confidence 4688999999854 899999999999997543 355667888999999999999988 999999999999999987888
Q ss_pred hHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhh
Q 014945 150 TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 229 (415)
Q Consensus 150 ~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~ 229 (415)
+..+.+.|+++.|+.+|.+++..++..++.+|.+++..++..+..+.+.|+++.|+.++...........++.++.+++.
T Consensus 269 ~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~ 348 (780)
T 2z6g_A 269 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 348 (780)
T ss_dssp HHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhc
Confidence 88888999999999999999999999999999999988888899999999999999999655566677889999999997
Q ss_pred CCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHH
Q 014945 230 GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 309 (415)
Q Consensus 230 ~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~n 309 (415)
...........++++.|+.++.+.+..++..++|++.+++...... ....++++.|+.+|.+.++.++..|+++|++
T Consensus 349 ~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~---~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~ 425 (780)
T 2z6g_A 349 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSN 425 (780)
T ss_dssp STTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 6433333445789999999999999999999999999999765431 1124688999999999999999999999999
Q ss_pred hhcCChHHHHHHHHCCChHHHHHHhcCCCcc-chHHHHHHHHHHHhcCCHH---HHHHHHHcCCHHHHHHHhccCCH-HH
Q 014945 310 IVTGDDMQTQCIINHQALPCLLDLLTQNYKK-SIKKEACWTISNITAGNVN---QIQAIIEAGIIGPLVNLLLNAEF-EI 384 (415)
Q Consensus 310 l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~-~v~~~a~~~l~nl~~~~~~---~~~~l~~~~~i~~L~~~l~~~~~-~v 384 (415)
++.+++.....+.+.|+++.|+.++.+..+. .++..|+++|+||+..+++ ....+.+.|+++.|+++|.+++. .+
T Consensus 426 L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v 505 (780)
T 2z6g_A 426 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPL 505 (780)
T ss_dssp HTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHH
T ss_pred HHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHH
Confidence 9999888888899999999999999874233 8999999999999975433 23467789999999999998764 99
Q ss_pred HHHHHHHHHHHhCC
Q 014945 385 KKEAAWAISNATSG 398 (415)
Q Consensus 385 ~~~a~~aL~nl~~~ 398 (415)
++.|+|+|+|++.+
T Consensus 506 ~~~A~~aL~nLa~~ 519 (780)
T 2z6g_A 506 IKATVGLIRNLALC 519 (780)
T ss_dssp HHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999999974
No 28
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.97 E-value=1e-29 Score=223.59 Aligned_cols=239 Identities=35% Similarity=0.556 Sum_probs=220.4
Q ss_pred CchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHH
Q 014945 114 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRD 193 (415)
Q Consensus 114 g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~ 193 (415)
..++.++..|.+++ ++++..|+++|.++...+++.+..+++.|+++.|+.+|.++++.++..|+++|++++.+++..+.
T Consensus 12 ~~~~~~~~~L~s~~-~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (252)
T 4db8_A 12 SELPQMTQQLNSDD-MQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (252)
T ss_dssp CSHHHHHHHHHSSC-SSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred chHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 45899999999998 89999999999887776678888999999999999999999999999999999999998888999
Q ss_pred HHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCC-chhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCC
Q 014945 194 LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQP-LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGT 272 (415)
Q Consensus 194 ~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~-~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~ 272 (415)
.+.+.|+++.|+.++ .++++.++..++|+|.+++...+.. ......+++|.|+.+|.++++.++..++|+|++++...
T Consensus 91 ~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 169 (252)
T 4db8_A 91 AVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 169 (252)
T ss_dssp HHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHcCCHHHHHHHH-cCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 999999999999999 6678999999999999999876443 44455789999999999999999999999999999988
Q ss_pred hHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHH
Q 014945 273 NDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISN 352 (415)
Q Consensus 273 ~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~n 352 (415)
++....+.+.|+++.|+.+|.++++.++..|+++|++++.+++.....+.+.|+++.|..++.++ ++.++..|+|+|+|
T Consensus 170 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~A~~~L~~ 248 (252)
T 4db8_A 170 NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHE-NEKIQKEAQEALEK 248 (252)
T ss_dssp HHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCS-SSHHHHTHHHHHHT
T ss_pred hHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 88888889999999999999999999999999999999998888899999999999999999998 99999999999999
Q ss_pred Hhc
Q 014945 353 ITA 355 (415)
Q Consensus 353 l~~ 355 (415)
++.
T Consensus 249 l~~ 251 (252)
T 4db8_A 249 LQS 251 (252)
T ss_dssp TC-
T ss_pred Hhc
Confidence 974
No 29
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.97 E-value=3.8e-29 Score=219.86 Aligned_cols=239 Identities=35% Similarity=0.516 Sum_probs=218.2
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCC-CCCc
Q 014945 157 GAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPL 235 (415)
Q Consensus 157 g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~-~~~~ 235 (415)
..++.++..|.+++++++..|+++|.++....+..+..+.+.|+++.|+.+| .+.++.++..++|+|.+++.+. ....
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQ 90 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHH-cCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 4588999999999999999999999887765666778899999999999999 6667999999999999999865 3333
Q ss_pred hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCCh
Q 014945 236 FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD 315 (415)
Q Consensus 236 ~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~ 315 (415)
.....+++|.|+.+|.++++.++..++|+|++++...+.....+.+.|+++.|+.+|.++++.++..++++|++++.+.+
T Consensus 91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~ 170 (252)
T 4db8_A 91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 170 (252)
T ss_dssp HHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCh
Confidence 34447899999999999999999999999999999888776789999999999999999999999999999999999988
Q ss_pred HHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHH
Q 014945 316 MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNA 395 (415)
Q Consensus 316 ~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl 395 (415)
.....+.+.|+++.|+.++.++ ++.++..|+|+|+|++.++++....+++.|+++.|+.++.+++++++..|+|+|.|+
T Consensus 171 ~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l 249 (252)
T 4db8_A 171 EQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL 249 (252)
T ss_dssp HHHHHHHHTTCHHHHHHGGGCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHCCC-CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 8888899999999999999998 999999999999999998999999999999999999999999999999999999999
Q ss_pred hC
Q 014945 396 TS 397 (415)
Q Consensus 396 ~~ 397 (415)
+.
T Consensus 250 ~~ 251 (252)
T 4db8_A 250 QS 251 (252)
T ss_dssp C-
T ss_pred hc
Confidence 74
No 30
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.97 E-value=2e-28 Score=215.06 Aligned_cols=242 Identities=27% Similarity=0.401 Sum_probs=221.7
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhh
Q 014945 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 150 (415)
Q Consensus 71 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~ 150 (415)
+.++.+++.|.+++++.+..|+++|.++.... .+....+++.|+++.|++++++++ +.++..|+++|++++.++++.+
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~~ 79 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGP-ASAIKAIVDAGGVEVLVKLLTSTD-SEVQKEAARALANIASGPDEAI 79 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHTTSCHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-cHHHHHHHHCCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHcCChHHH
Confidence 57899999999999999999999999997654 346777889999999999999998 9999999999999999889999
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhC
Q 014945 151 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 230 (415)
Q Consensus 151 ~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~ 230 (415)
..+.+.|+++.|+.++.++++.++..|+++|++++...+..+..+.+.|+++.|+.++ .+.++.++..++|+|.+++..
T Consensus 80 ~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l-~~~~~~~~~~a~~~L~~l~~~ 158 (252)
T 4hxt_A 80 KAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIASG 158 (252)
T ss_dssp HHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999988888899999999999999999 677899999999999999987
Q ss_pred CCCC-chhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHH
Q 014945 231 KPQP-LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 309 (415)
Q Consensus 231 ~~~~-~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~n 309 (415)
.+.. ......+++|.|+.++.++++.++..++++|++++...+...+.+.+.|+++.|+.++.++++.++..|+++|+|
T Consensus 159 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 238 (252)
T 4hxt_A 159 PDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALEN 238 (252)
T ss_dssp CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 5322 334447899999999999999999999999999999888888889999999999999999999999999999999
Q ss_pred hhcCCh
Q 014945 310 IVTGDD 315 (415)
Q Consensus 310 l~~~~~ 315 (415)
++...+
T Consensus 239 l~~~~~ 244 (252)
T 4hxt_A 239 IKSGGW 244 (252)
T ss_dssp HHHTCB
T ss_pred HHcCCC
Confidence 997654
No 31
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.2e-25 Score=218.06 Aligned_cols=320 Identities=10% Similarity=0.127 Sum_probs=257.1
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHH-hcCchHHHHHhhcC-CCChHHHHHHHHHHHHHhCCCch--
Q 014945 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVI-QSGVVPRFIEFLSR-DDFPQLQFEAAWALTNIASGTSE-- 148 (415)
Q Consensus 73 i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~~g~i~~L~~ll~~-~~~~~i~~~a~~~L~~l~~~~~~-- 148 (415)
.+.+.+.|.+++.+.+..|++.|..+.. . .+..+.+. +.|+++.|+++++. .+ ..+.+.++.+|.|++...+.
T Consensus 336 a~~~~~~L~~~~~~~~~~AvEgLaYLSl-~-~~VKe~L~~d~~~L~~Lv~llk~~~d-~s~~Ygal~IL~NLt~~~~~~~ 412 (778)
T 3opb_A 336 SEIFINAISRRIVPKVEMSVEALAYLSL-K-ASVKIMIRSNESFTEILLTMIKSQKM-THCLYGLLVIMANLSTLPEEXX 412 (778)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHHHTT-S-SHHHHHHHHCHHHHHHHHHHHTTTCC-TTHHHHHHHHHHHTTCCCCCCC
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHhC-C-HHHHHHHHhCHHHHHHHHHHHhCCCC-chHHHHHHHHHHHhcCCCcccc
Confidence 4667778888777778999999999843 2 34444454 56779999999996 55 78999999999999974331
Q ss_pred ------------------------------------hhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhH
Q 014945 149 ------------------------------------NTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 192 (415)
Q Consensus 149 ------------------------------------~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~ 192 (415)
.+..+.+.|++|.|+.++.++++.+++.++|+|.||+.+ +.+|
T Consensus 413 ~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d-~~~R 491 (778)
T 3opb_A 413 XXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRS-KNFI 491 (778)
T ss_dssp CCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTS-GGGH
T ss_pred hhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHH
Confidence 345677899999999999999999999999999999977 5689
Q ss_pred HHHHhcCChHHHHHHhccchhH--hHHHHHHHHHHHhhhCC-CCCchh--hhhchHHHHHHhhcC-CCh-----------
Q 014945 193 DLVLSNGALMPLLAQFNEHAKL--SMLRNATWTLSNFCRGK-PQPLFE--QTRPALPALERLIHS-NDD----------- 255 (415)
Q Consensus 193 ~~~~~~g~i~~L~~~l~~~~~~--~~~~~a~~~l~~l~~~~-~~~~~~--~~~~~l~~l~~lL~~-~d~----------- 255 (415)
..+.++|++++|+.++...... ..+..|+++|++++... |...+. ...+++|.|+.+|.. ++.
T Consensus 492 ~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~ 571 (778)
T 3opb_A 492 PQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQI 571 (778)
T ss_dssp HHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCC
T ss_pred HHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccc
Confidence 9999999999999999554333 27899999999999653 221111 113899999999983 221
Q ss_pred --hHHHHHHHHHHHhccCCh----HHHHHHHHc-CcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCC---
Q 014945 256 --EVLTDACWALSYLSDGTN----DKIQAVIEA-GVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQ--- 325 (415)
Q Consensus 256 --~v~~~a~~~l~~l~~~~~----~~~~~~~~~-~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~--- 325 (415)
--..+|+.+|.||+..++ +....++.. |+++.|..+|.+++..++..|+++++|++.+.+...+.+++.+
T Consensus 572 ~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~ 651 (778)
T 3opb_A 572 KLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQ 651 (778)
T ss_dssp CHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHH
T ss_pred cHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCch
Confidence 126799999999998762 334557875 9999999999999999999999999999985542212343322
Q ss_pred ---ChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHc-CCHHHHHHHhcc--CCHHHHHHHHHHHHHHhC
Q 014945 326 ---ALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEA-GIIGPLVNLLLN--AEFEIKKEAAWAISNATS 397 (415)
Q Consensus 326 ---~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~-~~i~~L~~~l~~--~~~~v~~~a~~aL~nl~~ 397 (415)
.++.|+.++.++ +..+|+.|+|+|+|++.+++...+.+++. ++++.++.++.+ ++++++..++.++.|++.
T Consensus 652 ~~~rL~lLV~Ll~s~-D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 652 SLRNFNILVKLLQLS-DVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp HHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred hhccHHHHHHHHcCC-CHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 378899999888 99999999999999988788888888876 799999999999 899999999999999996
No 32
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.94 E-value=6.1e-25 Score=187.39 Aligned_cols=199 Identities=37% Similarity=0.533 Sum_probs=181.2
Q ss_pred hcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCC-CCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHH
Q 014945 197 SNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP-QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDK 275 (415)
Q Consensus 197 ~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~ 275 (415)
..+..+.|+.++ .++++.++..++|+|.+++...+ ........+++|.|+.+|.++++.++..++|+|++++.+++..
T Consensus 10 ~~~~~~~l~~LL-~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 88 (210)
T 4db6_A 10 HGSELPQMVQQL-NSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 88 (210)
T ss_dssp ---CHHHHHHHT-TCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred ccchhHHHHHHh-cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHH
Confidence 456788899999 78899999999999999997653 2233444689999999999999999999999999999888888
Q ss_pred HHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhc
Q 014945 276 IQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 355 (415)
Q Consensus 276 ~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~ 355 (415)
...+++.|+++.|+.+|.++++.++..|+++|+|++.+.+.....+++.|+++.|+.++.++ ++.++..|+|+|+|++.
T Consensus 89 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~ 167 (210)
T 4db6_A 89 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIAS 167 (210)
T ss_dssp HHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCC-CHHHHHHHHHHHHHHHc
Confidence 88899999999999999999999999999999999998888888899999999999999998 99999999999999999
Q ss_pred CCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhC
Q 014945 356 GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 397 (415)
Q Consensus 356 ~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~ 397 (415)
++++....+.+.|+++.|+.++.++++++++.|+++|.+++.
T Consensus 168 ~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 168 GGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp SCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred CCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 889999999999999999999999999999999999999985
No 33
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.93 E-value=1e-24 Score=186.06 Aligned_cols=199 Identities=33% Similarity=0.526 Sum_probs=181.2
Q ss_pred hcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchh
Q 014945 112 QSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 191 (415)
Q Consensus 112 ~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~ 191 (415)
..|+.+.|+.+|++++ +.++..|+|+|.+++.++++.+..+.+.|+++.|+.+|.++++.++..|+|+|+|++.+++..
T Consensus 10 ~~~~~~~l~~LL~s~~-~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 88 (210)
T 4db6_A 10 HGSELPQMVQQLNSPD-QQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 88 (210)
T ss_dssp ---CHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred ccchhHHHHHHhcCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHH
Confidence 4678899999999998 999999999999999888999999999999999999999999999999999999999888888
Q ss_pred HHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCC-chhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhcc
Q 014945 192 RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQP-LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSD 270 (415)
Q Consensus 192 ~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~-~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~ 270 (415)
+..+.+.|+++.|+.+| .+.++.++..++|+|.+++...+.. ......+++|.|+.++.++++.++..++++|.+++.
T Consensus 89 ~~~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 167 (210)
T 4db6_A 89 IQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 167 (210)
T ss_dssp HHHHHHTTCHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHH-cCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 99999999999999999 7778999999999999999865322 233447899999999999999999999999999999
Q ss_pred CChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhc
Q 014945 271 GTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT 312 (415)
Q Consensus 271 ~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~ 312 (415)
..++....+.+.|+++.|+.++.++++.++..|+++|++++.
T Consensus 168 ~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 168 GGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp SCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred CCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 878888889999999999999999999999999999999975
No 34
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.92 E-value=6.1e-24 Score=188.50 Aligned_cols=188 Identities=18% Similarity=0.198 Sum_probs=169.8
Q ss_pred hHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHH
Q 014945 129 PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVR-LLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQ 207 (415)
Q Consensus 129 ~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~-ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~ 207 (415)
.+-+..|+..|.+++.. .++...+.+.|++|.|+. +|.++++.+++.|+|+|++++.+++.+++.+++.|++++|+.+
T Consensus 54 ~e~k~~Al~~L~~lv~~-~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L 132 (296)
T 1xqr_A 54 QQEREGALELLADLCEN-MDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL 132 (296)
T ss_dssp HHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhC-hhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence 46788999999999985 667888899999999999 9999999999999999999999999999999999999999999
Q ss_pred hccchhHhHHHHHHHHHHHhhhCCCC-CchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHH
Q 014945 208 FNEHAKLSMLRNATWTLSNFCRGKPQ-PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCP 286 (415)
Q Consensus 208 l~~~~~~~~~~~a~~~l~~l~~~~~~-~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~ 286 (415)
|..+++..+++.|+|+|++++++.+. .......+++|.|+.+|++++..++..++|+|++++.++++.++.+++.|+++
T Consensus 133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~ 212 (296)
T 1xqr_A 133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQ 212 (296)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHH
T ss_pred HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHH
Confidence 95455789999999999999987633 22333468999999999999999999999999999988888889999999999
Q ss_pred HHHHhcCCCChhhHHHHHHHHHHhhcCChHH
Q 014945 287 RLVELLRHPSPSVLIPALRTVGNIVTGDDMQ 317 (415)
Q Consensus 287 ~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~ 317 (415)
.|+.+|.+++..++..++++|++++.+.+..
T Consensus 213 ~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~ 243 (296)
T 1xqr_A 213 QLVALVRTEHSPFHEHVLGALCSLVTDFPQG 243 (296)
T ss_dssp HHHHHHTSCCSTHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCChhHHHHHHHHHHHHHhCChhH
Confidence 9999999999999999999999999986543
No 35
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.91 E-value=1.2e-23 Score=186.65 Aligned_cols=188 Identities=14% Similarity=0.179 Sum_probs=169.1
Q ss_pred hhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHH-hhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHH
Q 014945 212 AKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALER-LIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVE 290 (415)
Q Consensus 212 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~-lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ 290 (415)
.+.+-+..|+..|.+++...+........|++|.++. +|.++++.++..|+|+|++++.+++...+.+++.|+++.|+.
T Consensus 52 ~~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~ 131 (296)
T 1xqr_A 52 ADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLR 131 (296)
T ss_dssp HHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHH
Confidence 3455677888888888876433333344788999999 999999999999999999999998888888999999999999
Q ss_pred hcCC-CChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCC
Q 014945 291 LLRH-PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGI 369 (415)
Q Consensus 291 lL~~-~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~ 369 (415)
+|.+ ++..++..|+|+|+|++.+++...+.+.+.|+++.|+.+|.++ ++.++..|+|+|++++.++++.+..+++.|+
T Consensus 132 LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~-d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~ 210 (296)
T 1xqr_A 132 LLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQ-VQKLKVKSAFLLQNLLVGHPEHKGTLCSMGM 210 (296)
T ss_dssp HHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCGGGHHHHHHTTH
T ss_pred HHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHhCChHHHHHHHHcCC
Confidence 9985 4789999999999999999988888899999999999999998 9999999999999999988899999999999
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHhCCCC
Q 014945 370 IGPLVNLLLNAEFEIKKEAAWAISNATSGGS 400 (415)
Q Consensus 370 i~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~ 400 (415)
++.|+.+|.+++++++..|+++|+|++..++
T Consensus 211 i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~ 241 (296)
T 1xqr_A 211 VQQLVALVRTEHSPFHEHVLGALCSLVTDFP 241 (296)
T ss_dssp HHHHHHHHTSCCSTHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCChhHHHHHHHHHHHHHhCCh
Confidence 9999999999999999999999999998843
No 36
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.89 E-value=1.8e-22 Score=171.35 Aligned_cols=197 Identities=19% Similarity=0.141 Sum_probs=170.6
Q ss_pred chHHHHHhhcCCCCh--HHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhH
Q 014945 115 VVPRFIEFLSRDDFP--QLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 192 (415)
Q Consensus 115 ~i~~L~~ll~~~~~~--~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~ 192 (415)
.+|.|+++|++++ + +++..|+++|.+++.++++.+..+.+.|+||.|+++|.++++.+++.|+|+|.||+.+++..+
T Consensus 9 ~i~~lV~lL~s~~-~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 9 TLERAVSMLEADH-MLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp CHHHHHHTCCSSC-CCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHhCCCC-chHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 4899999999988 6 899999999999998888999999999999999999999999999999999999999888899
Q ss_pred HHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhc----------------CCChh
Q 014945 193 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH----------------SNDDE 256 (415)
Q Consensus 193 ~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~----------------~~d~~ 256 (415)
..+.+.|++++|+.+|..+.+.++++.++.+|++|+..... ......+.+|.|+.++. ..+++
T Consensus 88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~-k~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~ 166 (233)
T 3tt9_A 88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKL-KNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFD 166 (233)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGG-HHHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHH
T ss_pred HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhh-HHHHHhccHHHHHHHHhccccCCcccccccccccchHH
Confidence 99999999999999995467889999999999999976433 33344667899988662 13679
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHc-CcHHHHHHhcCC------CChhhHHHHHHHHHHhhcC
Q 014945 257 VLTDACWALSYLSDGTNDKIQAVIEA-GVCPRLVELLRH------PSPSVLIPALRTVGNIVTG 313 (415)
Q Consensus 257 v~~~a~~~l~~l~~~~~~~~~~~~~~-~~i~~L~~lL~~------~~~~v~~~a~~~l~nl~~~ 313 (415)
++.++..+|.||+..+++..+.+.+. |+++.|+.+++. .+...++.|+.+|.||+..
T Consensus 167 v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 167 IFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 99999999999998776666777775 778999999863 2567899999999999864
No 37
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.89 E-value=2.8e-21 Score=187.80 Aligned_cols=315 Identities=15% Similarity=0.134 Sum_probs=244.0
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhH
Q 014945 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 151 (415)
Q Consensus 72 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~ 151 (415)
.++-|.+.+++ ..++..|+..|+++.+..+.. ...+.+ ..+.+.++|.+++ .+.+..|++.|..++.+ ++.++
T Consensus 297 ~~~~L~~~l~~--~~ir~lAavvL~KL~~~~~~~-~~si~~--La~~~~~~L~~~~-~~~~~~AvEgLaYLSl~-~~VKe 369 (778)
T 3opb_A 297 YLQLLERSLNV--EDVQIYSALVLVKTWSFTKLT-CINLKQ--LSEIFINAISRRI-VPKVEMSVEALAYLSLK-ASVKI 369 (778)
T ss_dssp HHHHHHHHTTS--GGGHHHHHHHHHHHTGGGTCT-TCCHHH--HHHHHHHHTTTCC-HHHHHHHHHHHHHHTTS-SHHHH
T ss_pred HHHHHHHHhcc--HHHHHHHHHHHHHHhcCCCCC-cCcHHH--HHHHHHHHHhcCC-ccHHHHHHHHHHHHhCC-HHHHH
Confidence 34566666654 467888999999987654221 112222 6788899998877 66699999999999986 78887
Q ss_pred HHHhC-CChHHHHHhhCC-CCHHHHHHHHHHHHHhcCCCch--------------------------------------h
Q 014945 152 VVIDH-GAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPK--------------------------------------C 191 (415)
Q Consensus 152 ~~~~~-g~i~~L~~ll~~-~~~~v~~~a~~~L~nl~~~~~~--------------------------------------~ 191 (415)
.+.+. |+++.|+.++.+ .+..+...++.+|.|++.+.+. .
T Consensus 370 ~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~ 449 (778)
T 3opb_A 370 MIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFN 449 (778)
T ss_dssp HHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHH
Confidence 77775 669999999995 6778899999999999864331 3
Q ss_pred HHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChh---HHHHHHHHHHHh
Q 014945 192 RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDE---VLTDACWALSYL 268 (415)
Q Consensus 192 ~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~---v~~~a~~~l~~l 268 (415)
+..+.+.|+++.|+.++ .+.++.++..++|+|.+++............|+++.|+.++.+.... ++..|+.+|.++
T Consensus 450 ~~~l~eaGvIp~Lv~Ll-~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArL 528 (778)
T 3opb_A 450 EKYILRTELISFLKREM-HNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRM 528 (778)
T ss_dssp HHHTTTTTHHHHHHHHG-GGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHH-cCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHH
Confidence 45678899999999999 77889999999999999997755555556689999999999887543 899999999999
Q ss_pred ccCChHHHHHHHH----cCcHHHHHHhcCC-CCh-------------hhHHHHHHHHHHhhcCCh----HHHHHHHHC-C
Q 014945 269 SDGTNDKIQAVIE----AGVCPRLVELLRH-PSP-------------SVLIPALRTVGNIVTGDD----MQTQCIINH-Q 325 (415)
Q Consensus 269 ~~~~~~~~~~~~~----~~~i~~L~~lL~~-~~~-------------~v~~~a~~~l~nl~~~~~----~~~~~~~~~-~ 325 (415)
+...+... ++. .|+++.|+.+|.. +.. --+..|+.+|+|++..++ +....++.+ |
T Consensus 529 lis~np~~--~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~g 606 (778)
T 3opb_A 529 LIFTNPGL--IFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKV 606 (778)
T ss_dssp HHTSCHHH--HSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHH
T ss_pred HhcCCHHH--HcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcC
Confidence 85443221 221 3889999999983 221 126689999999999873 345668886 9
Q ss_pred ChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHH-HHHHHcC------CHHHHHHHhccCCHHHHHHHHHHHHHHhCC
Q 014945 326 ALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQI-QAIIEAG------IIGPLVNLLLNAEFEIKKEAAWAISNATSG 398 (415)
Q Consensus 326 ~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~-~~l~~~~------~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~ 398 (415)
+++.|..++.++ +..+|+.|+|+++|++.+ ++.+ +.+.+.+ -++.|+.++..+|+++|.+|+|+|.|++..
T Consensus 607 a~~~L~~LL~s~-n~~VrrAA~elI~NL~~~-~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~ 684 (778)
T 3opb_A 607 YWSTIENLMLDE-NVPLQRSTLELISNMMSH-PLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATT 684 (778)
T ss_dssp HHHHHHHGGGCS-SHHHHHHHHHHHHHHHTS-GGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-CHHHHHHHHHHHHHHhCC-cHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCC
Confidence 999999999998 899999999999999984 4443 3443222 378999999999999999999999999754
No 38
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.87 E-value=1.4e-21 Score=165.92 Aligned_cols=197 Identities=18% Similarity=0.176 Sum_probs=165.1
Q ss_pred ccHHHHHHhhcCCCH--HHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCch
Q 014945 71 ESLPAMVAGVWSDDR--NIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSE 148 (415)
Q Consensus 71 ~~i~~l~~~l~~~~~--~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~ 148 (415)
..+|.++++|.++++ +++..|+..+.++.... .++...+++.|++|.|+++|++++ +++|..|+|+|.||+.++++
T Consensus 8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~-~~~r~~I~~~G~Ip~LV~lL~s~~-~~vq~~Aa~aL~nLa~~~~~ 85 (233)
T 3tt9_A 8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQK-SEARKRVNQLRGILKLLQLLKVQN-EDVQRAVCGALRNLVFEDND 85 (233)
T ss_dssp CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHC-HHHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHH
T ss_pred ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCC-cHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHhCCHH
Confidence 378999999999988 88999999999986553 566778889999999999999988 99999999999999998899
Q ss_pred hhHHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhcc---------------ch
Q 014945 149 NTRVVIDHGAVPIFVRLLS-SPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE---------------HA 212 (415)
Q Consensus 149 ~~~~~~~~g~i~~L~~ll~-~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~---------------~~ 212 (415)
++..+.+.|+||.|+++|. +++.+++++|+.+|+||+.... .+..+.+ +++++|+.++.. ..
T Consensus 86 nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~-~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~ 163 (233)
T 3tt9_A 86 NKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDK-LKNLMIT-EALLTLTENIIIPFSGWPEGDYPKANGLL 163 (233)
T ss_dssp HHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGG-GHHHHHH-HHHHHHCCCCCHHHHCCCGGGCCCCCTTC
T ss_pred HHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChh-hHHHHHh-ccHHHHHHHHhccccCCcccccccccccc
Confidence 9999999999999999997 5789999999999999997655 5667766 469999886520 12
Q ss_pred hHhHHHHHHHHHHHhhhCC-CCCchhh-hhchHHHHHHhhcC------CChhHHHHHHHHHHHhccC
Q 014945 213 KLSMLRNATWTLSNFCRGK-PQPLFEQ-TRPALPALERLIHS------NDDEVLTDACWALSYLSDG 271 (415)
Q Consensus 213 ~~~~~~~a~~~l~~l~~~~-~~~~~~~-~~~~l~~l~~lL~~------~d~~v~~~a~~~l~~l~~~ 271 (415)
+..++.+++++|.||+... ....... ..|+++.|+.+++. .+...+++++.+|.||+..
T Consensus 164 ~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 164 DFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 6689999999999999864 2222222 25788999999865 2667899999999999864
No 39
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.80 E-value=1e-19 Score=187.01 Aligned_cols=319 Identities=16% Similarity=0.183 Sum_probs=229.6
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhH-H---HhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCc
Q 014945 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINE-V---IQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTS 147 (415)
Q Consensus 72 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~-~---~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~ 147 (415)
-++.+++.+.++++..+..++.+|..+.... .+.... . .-..++|.|++++++++ +.+|..|+++|..+....+
T Consensus 129 ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~-~~~~~~~~~~~~~~~il~~l~~~l~~~~-~~vR~~A~~aL~~~~~~~~ 206 (852)
T 4fdd_A 129 LLPKLCSLLDSEDYNTCEGAFGALQKICEDS-AEILDSDVLDRPLNIMIPKFLQFFKHSS-PKIRSHAVACVNQFIISRT 206 (852)
T ss_dssp HHHHHHHHHSCSSHHHHHHHHHHHHHHHHHH-TTHHHHCSSSSCHHHHHHHHTTTTTCSS-HHHHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHh-HHHhchhhhcchHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHhccc
Confidence 5678888888999999999999999886543 111110 0 01246788889999887 9999999999998887544
Q ss_pred hhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHh
Q 014945 148 ENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNF 227 (415)
Q Consensus 148 ~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l 227 (415)
......+ .++++.++.++.++++.++..++++|+.++...+..-...+. ++++.++..+ .+.+..++..+++++..+
T Consensus 207 ~~~~~~~-~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~-~l~~~l~~~~-~~~~~~vr~~a~e~l~~l 283 (852)
T 4fdd_A 207 QALMLHI-DSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMH-NIVEYMLQRT-QDQDENVALEACEFWLTL 283 (852)
T ss_dssp HHHHTSH-HHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHH-HHHHHHHHHH-TCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHH-HHHHHHHHHc-cCCcHHHHHHHHHHHHHH
Confidence 3211111 246788889999999999999999999999766543221111 3566677777 667888999999999999
Q ss_pred hhCCCCCc--hhhhhchHHHHHHhh-----------cC-----------CChhHHHHHHHHHHHhccCChHHHHHHHHcC
Q 014945 228 CRGKPQPL--FEQTRPALPALERLI-----------HS-----------NDDEVLTDACWALSYLSDGTNDKIQAVIEAG 283 (415)
Q Consensus 228 ~~~~~~~~--~~~~~~~l~~l~~lL-----------~~-----------~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~ 283 (415)
+....... ......++|.++..+ .+ .+..++..+..++..++...++. ++ ..
T Consensus 284 ~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~---~~-~~ 359 (852)
T 4fdd_A 284 AEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDE---LL-PH 359 (852)
T ss_dssp TTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGG---GH-HH
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHH---HH-HH
Confidence 87631111 123346677777776 22 12346888888998887543321 11 23
Q ss_pred cHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHH
Q 014945 284 VCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQA 363 (415)
Q Consensus 284 ~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~ 363 (415)
+++.+...+.++++.++..|++++|+++.+........+ .++++.++..+.++ ++.||..|+|++++++...+.....
T Consensus 360 l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l-~~~l~~l~~~l~d~-~~~Vr~~a~~~l~~l~~~~~~~~~~ 437 (852)
T 4fdd_A 360 ILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYL-PELIPHLIQCLSDK-KALVRSITCWTLSRYAHWVVSQPPD 437 (852)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGH-HHHHHHHHHHTTCS-SHHHHHHHHHHHHHTHHHHHHSCTT
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHH-HHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHhccchHH
Confidence 678888888999999999999999999998875444322 36789999999998 9999999999999998632221111
Q ss_pred HHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCH
Q 014945 364 IIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSN 401 (415)
Q Consensus 364 l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~ 401 (415)
..-.++++.|+..+.+++++++..|+++|.+++...+.
T Consensus 438 ~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~ 475 (852)
T 4fdd_A 438 TYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACT 475 (852)
T ss_dssp TTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhH
Confidence 11224788899999889999999999999999865443
No 40
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.76 E-value=1.5e-15 Score=144.01 Aligned_cols=327 Identities=14% Similarity=0.182 Sum_probs=246.7
Q ss_pred ccHHHHHHhhcC--CCHHHHHHHHHHHHHHhccCCCC----------------chhHHH-hcCchHHHHHhhcCCCChHH
Q 014945 71 ESLPAMVAGVWS--DDRNIQLDATTQFRKLLSIERSP----------------PINEVI-QSGVVPRFIEFLSRDDFPQL 131 (415)
Q Consensus 71 ~~i~~l~~~l~~--~~~~~~~~a~~~l~~l~~~~~~~----------------~~~~~~-~~g~i~~L~~ll~~~~~~~i 131 (415)
.+++.++..|+. .|.+....++..|.++++....+ ..+.++ +.+.++.|+.+|++.+ ..+
T Consensus 60 ~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~d-f~v 138 (651)
T 3grl_A 60 QAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFD-FHV 138 (651)
T ss_dssp HTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCC-HHH
T ss_pred hhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCcc-HHH
Confidence 478999999985 57888888999999887754221 112333 5678999999999988 899
Q ss_pred HHHHHHHHHHHhCCCch-hhHHHHh-CCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhc
Q 014945 132 QFEAAWALTNIASGTSE-NTRVVID-HGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN 209 (415)
Q Consensus 132 ~~~a~~~L~~l~~~~~~-~~~~~~~-~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~ 209 (415)
|..++.+|..++...++ .++.+.. .++++.|+.+|+++.+.+|..++..|.+|+.+++..++.+.-.|+++.|+.++.
T Consensus 139 R~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~ 218 (651)
T 3grl_A 139 RWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIIT 218 (651)
T ss_dssp HHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHH
Confidence 99999999999988777 6777775 599999999999999999999999999999999999999999999999999994
Q ss_pred cch---hHhHHHHHHHHHHHhhhCCC-CCchhhhhchHHHHHHhhcCCChh------HHHH---HHHHHHHhccCC----
Q 014945 210 EHA---KLSMLRNATWTLSNFCRGKP-QPLFEQTRPALPALERLIHSNDDE------VLTD---ACWALSYLSDGT---- 272 (415)
Q Consensus 210 ~~~---~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~~l~~l~~lL~~~d~~------v~~~---a~~~l~~l~~~~---- 272 (415)
... .-.+...++.++.+|.+.++ ........+++|.|..+|..+++. ...+ ++.++.-++...
T Consensus 219 ~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~ 298 (651)
T 3grl_A 219 EEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPG 298 (651)
T ss_dssp HHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHH
T ss_pred hcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 332 23578999999999999874 333444478899999999754321 3333 555666665432
Q ss_pred --hHHHHHHHHcCcHHHHHHhcCCC--ChhhHHHHHHHHHHhhcCChHHHHHHHHCC---------ChHHHHHHhcCCCc
Q 014945 273 --NDKIQAVIEAGVCPRLVELLRHP--SPSVLIPALRTVGNIVTGDDMQTQCIINHQ---------ALPCLLDLLTQNYK 339 (415)
Q Consensus 273 --~~~~~~~~~~~~i~~L~~lL~~~--~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~---------~l~~L~~ll~~~~~ 339 (415)
..+...+.+.|+++.|++++... ...++..|+.+++.++.+++.....+.+.. ++..|+.++.+...
T Consensus 299 ~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~ 378 (651)
T 3grl_A 299 ATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQP 378 (651)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSC
T ss_pred CCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhccccc
Confidence 23445688899999999998765 568999999999999999987766665432 33344555655546
Q ss_pred cchHHHHHHHHHHHhcCCHHHHHHHHHc----------CCH---HHHHHHhccCCHHHHHHHHHHHHHHhCC
Q 014945 340 KSIKKEACWTISNITAGNVNQIQAIIEA----------GII---GPLVNLLLNAEFEIKKEAAWAISNATSG 398 (415)
Q Consensus 340 ~~v~~~a~~~l~nl~~~~~~~~~~l~~~----------~~i---~~L~~~l~~~~~~v~~~a~~aL~nl~~~ 398 (415)
..+|..|+.++..+..++++....++.. +.+ ..+..-+-+.|+--.--|+.+|.++...
T Consensus 379 ~~lR~Aa~~cl~ay~~~N~~~Q~~i~~~llp~~~~~~~~~~s~g~ll~~~l~s~d~~~~wfAavil~hll~~ 450 (651)
T 3grl_A 379 FVLRCAVLYCFQCFLYKNQKGQGEIVSTLLPSTIDATGNTVSAGQLLCGGLFSTDSLSNWCAAVALAHALQE 450 (651)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHTTSSCCCCCTTSSSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHhcCCcccccCCCCCCcchhhhhhhccCchHHHHHHHHHHHHHHcC
Confidence 7899999999999999888655555532 011 1234445556664444588888888876
No 41
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.76 E-value=6.4e-16 Score=146.58 Aligned_cols=325 Identities=16% Similarity=0.135 Sum_probs=252.7
Q ss_pred ccHHHHHHhhcC-CCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCC-CChHHHHHHHHHHHHHhCCCch
Q 014945 71 ESLPAMVAGVWS-DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRD-DFPQLQFEAAWALTNIASGTSE 148 (415)
Q Consensus 71 ~~i~~l~~~l~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~~i~~~a~~~L~~l~~~~~~ 148 (415)
+.|+.|+..+.+ .-.+.+..|+..|+.+... .+..+-+++++.|+..|+.. ++.++...++.+|.++.....+
T Consensus 21 etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~-----y~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~ 95 (651)
T 3grl_A 21 ETIQKLCDRVASSTLLDDRRNAVRALKSLSKK-----YRLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEE 95 (651)
T ss_dssp HHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTT-----TTTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--
T ss_pred hHHHHHHHHHhhccchhHHHHHHHHHHHHHHH-----hHHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCc
Confidence 478899998885 5578999999999998532 23344456799999999864 3478888899999887764432
Q ss_pred -----------------hhHHHH-hCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCch-hHHHHHhc-CChHHHHHHh
Q 014945 149 -----------------NTRVVI-DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK-CRDLVLSN-GALMPLLAQF 208 (415)
Q Consensus 149 -----------------~~~~~~-~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~-~~~~~~~~-g~i~~L~~~l 208 (415)
+.+.+. +.+.++.|+.+|++++..++..++.+|..|+...+. .++.+... ++++.|+.+|
T Consensus 96 ~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL 175 (651)
T 3grl_A 96 EEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLL 175 (651)
T ss_dssp ------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGG
T ss_pred ccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHH
Confidence 222333 457899999999999999999999999999988776 77777754 8999999999
Q ss_pred ccchhHhHHHHHHHHHHHhhhCCCCCch-hhhhchHHHHHHhhcCCC----hhHHHHHHHHHHHhccCChHHHHHHHHcC
Q 014945 209 NEHAKLSMLRNATWTLSNFCRGKPQPLF-EQTRPALPALERLIHSND----DEVLTDACWALSYLSDGTNDKIQAVIEAG 283 (415)
Q Consensus 209 ~~~~~~~~~~~a~~~l~~l~~~~~~~~~-~~~~~~l~~l~~lL~~~d----~~v~~~a~~~l~~l~~~~~~~~~~~~~~~ 283 (415)
++....++..++..|.+|+.+.+..+. ....++++.|+.++..+. ..+..+++.++.+|..++..+...+.+.|
T Consensus 176 -~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~ 254 (651)
T 3grl_A 176 -ADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGS 254 (651)
T ss_dssp -GCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred -hCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcC
Confidence 777888999999999999998754443 444799999999997654 37889999999999999988878889999
Q ss_pred cHHHHHHhcCCCChh------hHH---HHHHHHHHhhcCC------hHHHHHHHHCCChHHHHHHhcCCC-ccchHHHHH
Q 014945 284 VCPRLVELLRHPSPS------VLI---PALRTVGNIVTGD------DMQTQCIINHQALPCLLDLLTQNY-KKSIKKEAC 347 (415)
Q Consensus 284 ~i~~L~~lL~~~~~~------v~~---~a~~~l~nl~~~~------~~~~~~~~~~~~l~~L~~ll~~~~-~~~v~~~a~ 347 (415)
+++.|..+|..+++. ... .++.++.-++... ......+.+.|+++.+++++..+. ...++.+|.
T Consensus 255 ~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al 334 (651)
T 3grl_A 255 YIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETI 334 (651)
T ss_dssp CGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHH
T ss_pred CHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHH
Confidence 999999999754321 222 2666777776652 244567789999999999987542 457899999
Q ss_pred HHHHHHhcCCHHHHHHHHHcC---------CHHHHHHHhcc-CCHHHHHHHHHHHHHHhCCCCH
Q 014945 348 WTISNITAGNVNQIQAIIEAG---------IIGPLVNLLLN-AEFEIKKEAAWAISNATSGGSN 401 (415)
Q Consensus 348 ~~l~nl~~~~~~~~~~l~~~~---------~i~~L~~~l~~-~~~~v~~~a~~aL~nl~~~~~~ 401 (415)
.+++.++.+++.....+.+.. ++..|+.++.+ ..+++|.+|+.++..+..+.+.
T Consensus 335 ~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N~~ 398 (651)
T 3grl_A 335 NTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQK 398 (651)
T ss_dssp HHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCCHH
Confidence 999999999998877776532 23334444544 4589999999999999987543
No 42
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.75 E-value=1.9e-16 Score=140.87 Aligned_cols=230 Identities=14% Similarity=0.151 Sum_probs=184.0
Q ss_pred hcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchh
Q 014945 112 QSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 191 (415)
Q Consensus 112 ~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~ 191 (415)
..+.++.|+..|.+++ +.++..|+++|+++.. + +.++.|+.++.++++.++..|+++|+.+.......
T Consensus 21 ~~~~i~~L~~~L~~~~-~~vr~~A~~~L~~~~~--~---------~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~ 88 (280)
T 1oyz_A 21 KKLNDDELFRLLDDHN-SLKRISSARVLQLRGG--Q---------DAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCE 88 (280)
T ss_dssp HTSCHHHHHHHTTCSS-HHHHHHHHHHHHHHCC--H---------HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTH
T ss_pred HHhhHHHHHHHHHcCC-HHHHHHHHHHHHccCC--c---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccc
Confidence 4567999999999988 9999999999999873 1 35888999999999999999999999997543321
Q ss_pred HHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccC
Q 014945 192 RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDG 271 (415)
Q Consensus 192 ~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~ 271 (415)
.. .++.|...+..++++.++..++++|.++....+ ......++.+..++.++++.++..++++++++..
T Consensus 89 ~~------l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~----~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~- 157 (280)
T 1oyz_A 89 DN------VFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND- 157 (280)
T ss_dssp HH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---
T ss_pred hH------HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC----cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC-
Confidence 11 223343333367788999999999999985432 1234678899999999999999999999998753
Q ss_pred ChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHH
Q 014945 272 TNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTIS 351 (415)
Q Consensus 272 ~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~ 351 (415)
.+.++.|+.++.++++.++..++++|+.+....+ .+++.|..++.++ ++.+|..|+++|+
T Consensus 158 ----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~-~~~vR~~A~~aL~ 217 (280)
T 1oyz_A 158 ----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDK-NEEVRIEAIIGLS 217 (280)
T ss_dssp -----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCS-CHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCC-CHHHHHHHHHHHH
Confidence 2478999999999999999999999999864333 3467889999988 9999999999999
Q ss_pred HHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhC
Q 014945 352 NITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 397 (415)
Q Consensus 352 nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~ 397 (415)
++.. ...++.|+..+.+++ ++..|+++|+.+..
T Consensus 218 ~~~~-----------~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~ 250 (280)
T 1oyz_A 218 YRKD-----------KRVLSVLCDELKKNT--VYDDIIEAAGELGD 250 (280)
T ss_dssp HTTC-----------GGGHHHHHHHHTSSS--CCHHHHHHHHHHCC
T ss_pred HhCC-----------HhhHHHHHHHhcCcc--HHHHHHHHHHhcCc
Confidence 9862 237888888887654 88999999999864
No 43
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.75 E-value=3.6e-16 Score=139.12 Aligned_cols=255 Identities=15% Similarity=0.125 Sum_probs=201.1
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhh
Q 014945 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 150 (415)
Q Consensus 71 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~ 150 (415)
..++.|+..|.++++.++..|++.|.++.. .+.++.|+.++.+++ +.++..|+++|+.+..... ..
T Consensus 23 ~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~------------~~~~~~L~~~l~d~~-~~vR~~A~~aL~~l~~~~~-~~ 88 (280)
T 1oyz_A 23 LNDDELFRLLDDHNSLKRISSARVLQLRGG------------QDAVRLAIEFCSDKN-YIRRDIGAFILGQIKICKK-CE 88 (280)
T ss_dssp SCHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------HHHHHHHHHHHTCSS-HHHHHHHHHHHHHSCCCTT-TH
T ss_pred hhHHHHHHHHHcCCHHHHHHHHHHHHccCC------------chHHHHHHHHHcCCC-HHHHHHHHHHHHHhccccc-cc
Confidence 478999999999999999999999998741 235789999999988 9999999999999875322 11
Q ss_pred HHHHhCCChHHHH-HhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhh
Q 014945 151 RVVIDHGAVPIFV-RLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 229 (415)
Q Consensus 151 ~~~~~~g~i~~L~-~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~ 229 (415)
. .+++.|. .++.++++.++..++++|+++....+.... ..++.|+..+ .++++.++..++++|.++..
T Consensus 89 ~-----~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~~-----~~~~~L~~~l-~d~~~~vR~~a~~aL~~~~~ 157 (280)
T 1oyz_A 89 D-----NVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSP-----KIVEQSQITA-FDKSTNVRRATAFAISVIND 157 (280)
T ss_dssp H-----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHT-TCSCHHHHHHHHHHHHTC--
T ss_pred h-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcccH-----HHHHHHHHHh-hCCCHHHHHHHHHHHHhcCC
Confidence 1 1334444 246778999999999999999744332211 2567888888 78899999999999998764
Q ss_pred CCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHH
Q 014945 230 GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 309 (415)
Q Consensus 230 ~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~n 309 (415)
...+|.|..++.++++.++..++++|+.+....+ .+++.|..+|.++++.++..|+++|++
T Consensus 158 ----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~~~~vR~~A~~aL~~ 218 (280)
T 1oyz_A 158 ----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDKNEEVRIEAIIGLSY 218 (280)
T ss_dssp -----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 2478999999999999999999999999854333 246888999999999999999999999
Q ss_pred hhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhcc-CCHHHHHHH
Q 014945 310 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN-AEFEIKKEA 388 (415)
Q Consensus 310 l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~-~~~~v~~~a 388 (415)
+.. ...++.|...+.++ + ++..|+++|+.+.. + .+++.|..++.+ .++++...+
T Consensus 219 ~~~-----------~~~~~~L~~~l~d~-~--vr~~a~~aL~~i~~--~---------~~~~~L~~~l~~~~~~~~~~~~ 273 (280)
T 1oyz_A 219 RKD-----------KRVLSVLCDELKKN-T--VYDDIIEAAGELGD--K---------TLLPVLDTMLYKFDDNEIITSA 273 (280)
T ss_dssp TTC-----------GGGHHHHHHHHTSS-S--CCHHHHHHHHHHCC--G---------GGHHHHHHHHTTSSCCHHHHHH
T ss_pred hCC-----------HhhHHHHHHHhcCc-c--HHHHHHHHHHhcCc--h---------hhhHHHHHHHhcCCCcHHHHHH
Confidence 862 25688899999775 3 89999999999854 2 378889999875 667888888
Q ss_pred HHHHHH
Q 014945 389 AWAISN 394 (415)
Q Consensus 389 ~~aL~n 394 (415)
..+|.+
T Consensus 274 ~~~l~~ 279 (280)
T 1oyz_A 274 IDKLKR 279 (280)
T ss_dssp HHHHTC
T ss_pred HHHhhc
Confidence 877753
No 44
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.73 E-value=7.2e-17 Score=165.91 Aligned_cols=309 Identities=14% Similarity=0.172 Sum_probs=230.0
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHH
Q 014945 74 PAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVV 153 (415)
Q Consensus 74 ~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~ 153 (415)
+.+++.|.+.++.++..++.++..++... .+ .. -.++++.|++.+.+++ +.++..++.+|+.++...+.....-
T Consensus 93 ~~ll~~l~~~~~~vr~~~a~~i~~ia~~~-~~--~~--wp~ll~~L~~~l~~~~-~~~r~~al~~L~~i~~~~~~~~~~~ 166 (852)
T 4fdd_A 93 SECLNNIGDSSPLIRATVGILITTIASKG-EL--QN--WPDLLPKLCSLLDSED-YNTCEGAFGALQKICEDSAEILDSD 166 (852)
T ss_dssp HHHHTTTTCSSHHHHHHHHHHHHHHHHHT-TT--TT--CTTHHHHHHHHHSCSS-HHHHHHHHHHHHHHHHHHTTHHHHC
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHhc-Cc--cc--cHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHhHHHhchh
Confidence 55777788888999999999999998754 11 11 2457899999999988 8999999999999997544332110
Q ss_pred H----hCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhh
Q 014945 154 I----DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 229 (415)
Q Consensus 154 ~----~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~ 229 (415)
. -..+++.+++++.++++.++..|+++++++....+..-... -.+.++.+...+ .+++..++..++++|..++.
T Consensus 167 ~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~-~~~~l~~l~~~~-~d~~~~vr~~a~~~L~~l~~ 244 (852)
T 4fdd_A 167 VLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLH-IDSFIENLFALA-GDEEPEVRKNVCRALVMLLE 244 (852)
T ss_dssp SSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTS-HHHHHHHHHHHH-TCCCHHHHHHHHHHHHHHHH
T ss_pred hhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHH-HHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHH
Confidence 0 12357788888888999999999999999886544211000 112566777777 67788999999999999998
Q ss_pred CCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHc---CcHHHHHHhc-----------CC-
Q 014945 230 GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA---GVCPRLVELL-----------RH- 294 (415)
Q Consensus 230 ~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~---~~i~~L~~lL-----------~~- 294 (415)
..+.........+++.+...+.+.++.++..+++.+..++...... . .+.. .+++.++..+ .+
T Consensus 245 ~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~-~-~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~ 322 (852)
T 4fdd_A 245 VRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICK-D-VLVRHLPKLIPVLVNGMKYSDIDIILLKGDV 322 (852)
T ss_dssp HCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHH-H-HHTTTHHHHHHHHHHHTSCCHHHHHHHHC--
T ss_pred hCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHH-H-HHHHHHHHHHHHHHHHcCCcHhHHHHhcCCc
Confidence 7543333345678888889999999999999999999998654321 1 2211 3456666666 23
Q ss_pred ----------CChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHH
Q 014945 295 ----------PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAI 364 (415)
Q Consensus 295 ----------~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l 364 (415)
.++.++..|..+++.++...+.. ++. .+++.+...+.++ ++.+|..|++++++++.+..+.....
T Consensus 323 ~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~---~~~-~l~~~l~~~l~~~-~~~~R~aa~~alg~i~~~~~~~~~~~ 397 (852)
T 4fdd_A 323 EGGSGGDDTISDWNLRKCSAAALDVLANVYRDE---LLP-HILPLLKELLFHH-EWVVKESGILVLGAIAEGCMQGMIPY 397 (852)
T ss_dssp ----------CCCCHHHHHHHHHHHHHHHHGGG---GHH-HHHHHHHHHHTCS-SHHHHHHHHHHHHHTTTTTHHHHGGG
T ss_pred ccccccccccccchHHHHHHHHHHHHHHhccHH---HHH-HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 34567899999999998644321 222 4678888888888 99999999999999999877765544
Q ss_pred HHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhCC
Q 014945 365 IEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSG 398 (415)
Q Consensus 365 ~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~ 398 (415)
. .++++.++..+.++++.||..|+|++++++..
T Consensus 398 l-~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~ 430 (852)
T 4fdd_A 398 L-PELIPHLIQCLSDKKALVRSITCWTLSRYAHW 430 (852)
T ss_dssp H-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHH
T ss_pred H-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 4 34899999999999999999999999999863
No 45
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.67 E-value=1.5e-15 Score=149.60 Aligned_cols=309 Identities=12% Similarity=0.111 Sum_probs=223.5
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchh-hH
Q 014945 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN-TR 151 (415)
Q Consensus 73 i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~-~~ 151 (415)
+|.+.+.+.++++.++..++.+|..+....+ .......+++.++.++++++ +.+|..|+++|+.++...... ..
T Consensus 244 ~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~----~~~~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~~~~~~~~~~~~ 318 (588)
T 1b3u_A 244 MPTLRQAAEDKSWRVRYMVADKFTELQKAVG----PEITKTDLVPAFQNLMKDCE-AEVRAAASHKVKEFCENLSADCRE 318 (588)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHTHHHHHHHHC----HHHHHHTHHHHHHHHHTCSS-HHHHHHHHHHHHHHHHTSCTTTHH
T ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHHHHhC----cccchhHHHHHHHHHhCCCc-HHHHHHHHHHHHHHHHHhChhhhh
Confidence 4445555566667777777777776653210 11223457889999999887 899999999999988753322 11
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCC
Q 014945 152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK 231 (415)
Q Consensus 152 ~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~ 231 (415)
...-..++|.+..++.++++.++..++++|+.++..-+. +. .....++.+..++ .+.+..++..++.++..++...
T Consensus 319 ~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~--~~-~~~~l~p~l~~~l-~d~~~~Vr~~a~~~l~~l~~~~ 394 (588)
T 1b3u_A 319 NVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK--DN-TIEHLLPLFLAQL-KDECPEVRLNIISNLDCVNEVI 394 (588)
T ss_dssp HHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCH--HH-HHHHTHHHHHHHH-TCSCHHHHHHHHTTCHHHHHHS
T ss_pred hHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhH--hH-HHHHHHHHHHHHh-CCCchHHHHHHHHHHHHHHHhc
Confidence 122236788999999999999999999999999743221 11 1223677888888 6678889999999999888653
Q ss_pred CCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhh
Q 014945 232 PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV 311 (415)
Q Consensus 232 ~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~ 311 (415)
. .......++|.+..++.+.+..++..++.++..++...... +....+++.+..+|.++++.++..|+.+++.++
T Consensus 395 ~--~~~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~ 469 (588)
T 1b3u_A 395 G--IRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVE---FFDEKLNSLCMAWLVDHVYAIREAATSNLKKLV 469 (588)
T ss_dssp C--HHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGG---GCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred C--HHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHH---HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 2 11234678899999999889999999999999887421111 111236788889999999999999999999998
Q ss_pred cCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHH
Q 014945 312 TGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWA 391 (415)
Q Consensus 312 ~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~a 391 (415)
...... .....++|.+..++.++ ++.+|..++++++.++...... . ....+++.|...+.++++.||..++++
T Consensus 470 ~~~~~~---~~~~~llp~l~~~~~~~-~~~~R~~a~~~l~~l~~~~~~~--~-~~~~~~~~l~~~l~d~~~~Vr~~a~~~ 542 (588)
T 1b3u_A 470 EKFGKE---WAHATIIPKVLAMSGDP-NYLHRMTTLFCINVLSEVCGQD--I-TTKHMLPTVLRMAGDPVANVRFNVAKS 542 (588)
T ss_dssp HHHCHH---HHHHHTHHHHHHTTTCS-CHHHHHHHHHHHHHHHHHHHHH--H-HHHHTHHHHHHGGGCSCHHHHHHHHHH
T ss_pred HHhCch---hHHHHHHHHHHHHhhCC-CHHHHHHHHHHHHHHHHhcCHH--H-HHHHHHHHHHhhCCCCCchHHHHHHHH
Confidence 643221 12236788888888887 8999999999999998632221 1 233489999999999999999999999
Q ss_pred HHHHhCCCCHH
Q 014945 392 ISNATSGGSNE 402 (415)
Q Consensus 392 L~nl~~~~~~~ 402 (415)
|+.++......
T Consensus 543 l~~l~~~~~~~ 553 (588)
T 1b3u_A 543 LQKIGPILDNS 553 (588)
T ss_dssp HHHHGGGSCHH
T ss_pred HHHHHHHhchh
Confidence 99998754443
No 46
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.67 E-value=2.2e-15 Score=148.38 Aligned_cols=304 Identities=13% Similarity=0.101 Sum_probs=228.1
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhH
Q 014945 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 151 (415)
Q Consensus 72 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~ 151 (415)
.++.+++.++++++.++..|+..+..+...-............++|.+..++++++ +.+|..++++|+.++..-.. .
T Consensus 282 l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~-~~vR~~a~~~l~~l~~~~~~--~ 358 (588)
T 1b3u_A 282 LVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDAN-QHVKSALASVIMGLSPILGK--D 358 (588)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSC-HHHHHHHHTTGGGGHHHHCH--H
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHhhH--h
Confidence 46778888888999999999999998876432221111223457899999999988 99999999999988752111 1
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCC
Q 014945 152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK 231 (415)
Q Consensus 152 ~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~ 231 (415)
.....++|.+..++.++++.++..++.+++.+...... +. .....++.+..++ .+.+..++..++.++..++..-
T Consensus 359 -~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~--~~-~~~~~lp~l~~~~-~d~~~~vr~~~~~~l~~l~~~~ 433 (588)
T 1b3u_A 359 -NTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGI--RQ-LSQSLLPAIVELA-EDAKWRVRLAIIEYMPLLAGQL 433 (588)
T ss_dssp -HHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCH--HH-HHHHHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCH--HH-HHHHHHHHHHHHh-cCCCchHHHHHHHHHHHHHHHc
Confidence 11234788999999999999999999999988753321 11 1223667777777 6778889999999999988643
Q ss_pred CCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhh
Q 014945 232 PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV 311 (415)
Q Consensus 232 ~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~ 311 (415)
+.. .....++|.+..++.+++..++..++.+++.++...... .....+++.+..++.++++.+|..++++++.++
T Consensus 434 ~~~--~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~---~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~ 508 (588)
T 1b3u_A 434 GVE--FFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKE---WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLS 508 (588)
T ss_dssp CGG--GCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH---HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHH
T ss_pred CHH--HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCch---hHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHH
Confidence 211 122467899999999999999999999999987543221 123457888998888899999999999999998
Q ss_pred cCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcC-CHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHH
Q 014945 312 TGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAW 390 (415)
Q Consensus 312 ~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~-~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~ 390 (415)
..... ......++|.+..++.++ ++.||..++++++.++.. .++ .....++|.|..++.+.|+++|..|++
T Consensus 509 ~~~~~---~~~~~~~~~~l~~~l~d~-~~~Vr~~a~~~l~~l~~~~~~~----~~~~~~~p~l~~l~~d~d~~vr~~a~~ 580 (588)
T 1b3u_A 509 EVCGQ---DITTKHMLPTVLRMAGDP-VANVRFNVAKSLQKIGPILDNS----TLQSEVKPILEKLTQDQDVDVKYFAQE 580 (588)
T ss_dssp HHHHH---HHHHHHTHHHHHHGGGCS-CHHHHHHHHHHHHHHGGGSCHH----HHHHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred HhcCH---HHHHHHHHHHHHhhCCCC-CchHHHHHHHHHHHHHHHhchh----hhHHHHHHHHHHHcCCCchhHHHHHHH
Confidence 64321 123346889999999988 999999999999999963 222 122346788888888899999999999
Q ss_pred HHHHHh
Q 014945 391 AISNAT 396 (415)
Q Consensus 391 aL~nl~ 396 (415)
++..+.
T Consensus 581 al~~l~ 586 (588)
T 1b3u_A 581 ALTVLS 586 (588)
T ss_dssp HHHHTT
T ss_pred HHHHhh
Confidence 998875
No 47
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.65 E-value=2e-15 Score=148.34 Aligned_cols=224 Identities=18% Similarity=0.163 Sum_probs=160.3
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhH
Q 014945 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 151 (415)
Q Consensus 72 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~ 151 (415)
.++.+.+.|+++|+.++..|+..+.++.. .+..+ .+++.+.+++.+++ +.+|..|++++.++...+++...
T Consensus 87 ~~n~l~kdL~~~n~~ir~~AL~~L~~i~~---~~~~~-----~l~~~l~~~L~d~~-~~VRk~A~~al~~i~~~~p~~~~ 157 (591)
T 2vgl_B 87 AVNSFVKDCEDPNPLIRALAVRTMGCIRV---DKITE-----YLCEPLRKCLKDED-PYVRKTAAVCVAKLHDINAQMVE 157 (591)
T ss_dssp THHHHGGGSSSSSHHHHHHHHHHHHTCCS---GGGHH-----HHHHHHHHHSSCSC-HHHHHHHHHHHHHHHHSSCCCHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHcCCh---HHHHH-----HHHHHHHHHcCCCC-hHHHHHHHHHHHHHHhhChhhcc
Confidence 34556666777788788777777766531 11111 24678999999888 99999999999999987666432
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCC
Q 014945 152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK 231 (415)
Q Consensus 152 ~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~ 231 (415)
+.+.++.+..+|.++++.++..|+++|+.++.+++.........+.+..|+..+ .+.++..+..++.++..++..
T Consensus 158 ---~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l-~~~~~~~q~~il~~l~~l~~~- 232 (591)
T 2vgl_B 158 ---DQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTAL-NECTEWGQIFILDCLSNYNPK- 232 (591)
T ss_dssp ---HHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHTSCCC-
T ss_pred ---cccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcC-CCCCchHHHHHHHHHHHhCCC-
Confidence 246789999999999999999999999999987763210111112456677777 455666777777777777632
Q ss_pred CCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccC---ChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHH
Q 014945 232 PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDG---TNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVG 308 (415)
Q Consensus 232 ~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~---~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~ 308 (415)
.......+++.+..++++.++.|+..|++++.++... +++..+.+. ..+.+.|+.++. +++.++..|+.+|+
T Consensus 233 ---~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~-~~~~~~L~~L~~-~d~~vr~~aL~~l~ 307 (591)
T 2vgl_B 233 ---DDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLL-KKLAPPLVTLLS-GEPEVQYVALRNIN 307 (591)
T ss_dssp ---SHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHH-HHTHHHHHHHTT-SCHHHHHHHHHHHH
T ss_pred ---ChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHH-HHHHHHHHHHhc-CCccHHHHHHHHHH
Confidence 2233467889999999999999999999999998742 233333322 345677776654 77889999999999
Q ss_pred HhhcCC
Q 014945 309 NIVTGD 314 (415)
Q Consensus 309 nl~~~~ 314 (415)
.++...
T Consensus 308 ~i~~~~ 313 (591)
T 2vgl_B 308 LIVQKR 313 (591)
T ss_dssp HHHHHC
T ss_pred HHHHhC
Confidence 887643
No 48
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.62 E-value=2.9e-15 Score=142.92 Aligned_cols=310 Identities=13% Similarity=0.097 Sum_probs=215.9
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCC--CChHHHHHHHHHHHHHhCCC-chhh
Q 014945 74 PAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRD--DFPQLQFEAAWALTNIASGT-SENT 150 (415)
Q Consensus 74 ~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~--~~~~i~~~a~~~L~~l~~~~-~~~~ 150 (415)
..++..+.++++.+ ..++.++..++... .+ .. .-.+++|.|++.+.++ + +.++..++.+|+.++... ++..
T Consensus 93 ~~ll~~l~~~~~~v-~~~~~~i~~ia~~~-~~-~~--~w~~ll~~L~~~l~~~~~~-~~~r~~al~~l~~l~~~~~~~~~ 166 (462)
T 1ibr_B 93 NYVLQTLGTETYRP-SSASQCVAGIACAE-IP-VN--QWPELIPQLVANVTNPNST-EHMKESTLEAIGYICQDIDPEQL 166 (462)
T ss_dssp HHHHHHTTCCCSSS-CSHHHHHHHHHHHH-GG-GT--CCTTHHHHHHHHHHCTTCC-HHHHHHHHHHHHHHHHHSCGGGT
T ss_pred HHHHHHhCCCCchh-hHHHHHHHHHHHHh-cc-cc--ccHHHHHHHHHHhccCCCC-HHHHHHHHHHHHHHHHhCCchhh
Confidence 34667777766666 66777777776542 11 10 1246899999999988 6 899999999999998743 2221
Q ss_pred HHHHhCCChHHHHHhhCCC--CHHHHHHHHHHHHHhcCCCchhH-HHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHh
Q 014945 151 RVVIDHGAVPIFVRLLSSP--TDDVREQAVWALGNVAGDSPKCR-DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNF 227 (415)
Q Consensus 151 ~~~~~~g~i~~L~~ll~~~--~~~v~~~a~~~L~nl~~~~~~~~-~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l 227 (415)
.... ..+++.+..++.++ ++.++..|+++++++...-...- ......-.++.+...+ .+.+..++..+++++..+
T Consensus 167 ~~~~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~vr~~~~~~l~~l 244 (462)
T 1ibr_B 167 QDKS-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEAT-QCPDTRVRVAALQNLVKI 244 (462)
T ss_dssp GGGH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHT-TCSSHHHHHHHHHHHHHH
T ss_pred HhHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHH
Confidence 1111 14678888899887 79999999999999764322110 0000111244444445 667889999999999999
Q ss_pred hhCCCCCchhhhh-chHHHHHHhhcCCChhHHHHHHHHHHHhccCChH---------------------HHHHHHHcCcH
Q 014945 228 CRGKPQPLFEQTR-PALPALERLIHSNDDEVLTDACWALSYLSDGTND---------------------KIQAVIEAGVC 285 (415)
Q Consensus 228 ~~~~~~~~~~~~~-~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~---------------------~~~~~~~~~~i 285 (415)
+...+..-..... .+++.+...+.+.++.++..+++.+..++..... .....+ ..++
T Consensus 245 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~ 323 (462)
T 1ibr_B 245 MSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGAL-QYLV 323 (462)
T ss_dssp HHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHh-hhcc
Confidence 9765432223345 7888888888889999999999998888753210 111011 2356
Q ss_pred HHHHHhcCC-------CChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCH
Q 014945 286 PRLVELLRH-------PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV 358 (415)
Q Consensus 286 ~~L~~lL~~-------~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~ 358 (415)
+.++..+.. .++.++..|+.+|+.++...+. .++ ..+++.+...+.++ ++.+|..|+++++.++.+..
T Consensus 324 p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~---~~~-~~~~~~l~~~l~~~-~~~~r~aal~~l~~l~~~~~ 398 (462)
T 1ibr_B 324 PILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED---DIV-PHVLPFIKEHIKNP-DWRYRDAAVMAFGCILEGPE 398 (462)
T ss_dssp HHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT---THH-HHHHHHHHHHTTCS-SHHHHHHHHHHHHHTSSSSC
T ss_pred HHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH---HHH-HHHHHHHHHHhcCC-ChHHHHHHHHHHHHHhcCCc
Confidence 667777743 3467899999999999875442 122 25677888888888 99999999999999998643
Q ss_pred -HHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhCC
Q 014945 359 -NQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSG 398 (415)
Q Consensus 359 -~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~ 398 (415)
+.....+ ..+++.++..+.++++.||..|+|+|++++..
T Consensus 399 ~~~~~~~l-~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~ 438 (462)
T 1ibr_B 399 PSQLKPLV-IQAMPTLIELMKDPSVVVRDTAAWTVGRICEL 438 (462)
T ss_dssp TTTTCTTT-TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 2222222 45899999999999999999999999999864
No 49
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.61 E-value=3e-14 Score=146.96 Aligned_cols=317 Identities=16% Similarity=0.220 Sum_probs=221.8
Q ss_pred cHHHHHHhhcCC--CHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCC-ChHHHHHHHHHHHHHhCCCch
Q 014945 72 SLPAMVAGVWSD--DRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDD-FPQLQFEAAWALTNIASGTSE 148 (415)
Q Consensus 72 ~i~~l~~~l~~~--~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~-~~~i~~~a~~~L~~l~~~~~~ 148 (415)
.++.+++.+.++ ++..+..++.++..+...-..+.... .-..+++.+.+.+.+++ +..+|..|+++++.++..-..
T Consensus 129 ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~-~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~ 207 (876)
T 1qgr_A 129 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQD-KSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA 207 (876)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGG-GHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHh-HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 467788888888 89999999999998875321111111 12346778888888762 389999999999998753221
Q ss_pred hh-HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHh
Q 014945 149 NT-RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNF 227 (415)
Q Consensus 149 ~~-~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l 227 (415)
.. .......+++.+...+.+++..++..++.+|..++...+..-...+...+++.++..+ .+.+..++..+++++..+
T Consensus 208 ~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~v~~~al~~l~~l 286 (876)
T 1qgr_A 208 NFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAM-KSDIDEVALQGIEFWSNV 286 (876)
T ss_dssp HHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHH-TCSSHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh-cCCchHHHHHHHHHHHHH
Confidence 11 0011112577778888888999999999999999865543322233335677777766 566788999999999888
Q ss_pred hhCC-------------------CCCch--hhhhchHHHHHHhhcC-------CChhHHHHHHHHHHHhccCChHHHHHH
Q 014945 228 CRGK-------------------PQPLF--EQTRPALPALERLIHS-------NDDEVLTDACWALSYLSDGTNDKIQAV 279 (415)
Q Consensus 228 ~~~~-------------------~~~~~--~~~~~~l~~l~~lL~~-------~d~~v~~~a~~~l~~l~~~~~~~~~~~ 279 (415)
+... +.... .....++|.++..+.. ++..++..+..++..++....+. +
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~---~ 363 (876)
T 1qgr_A 287 CDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD---I 363 (876)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGG---G
T ss_pred HHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHh---h
Confidence 7641 01111 1235667778877752 34678999999998887543321 1
Q ss_pred HHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCCh-HHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCH
Q 014945 280 IEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD-MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV 358 (415)
Q Consensus 280 ~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~-~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~ 358 (415)
+ ..+++.+...+.++++.++..+++++|.++.+.. ......+ .++++.++..+.++ ++.+|..|+|++++++...+
T Consensus 364 ~-~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~l~~~l~d~-~~~vr~~a~~~l~~~~~~~~ 440 (876)
T 1qgr_A 364 V-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDP-SVVVRDTAAWTVGRICELLP 440 (876)
T ss_dssp H-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHCG
T ss_pred H-HHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhCc
Confidence 2 2466778888889999999999999999998765 3333333 35889999999988 99999999999999997433
Q ss_pred HHH--HHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhCC
Q 014945 359 NQI--QAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSG 398 (415)
Q Consensus 359 ~~~--~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~ 398 (415)
... ...+ ..+++.|+..+.++ +.++..|+|+|.+++..
T Consensus 441 ~~~~~~~~l-~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~ 480 (876)
T 1qgr_A 441 EAAINDVYL-APLLQCLIEGLSAE-PRVASNVCWAFSSLAEA 480 (876)
T ss_dssp GGTSSTTTH-HHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHH
T ss_pred hhcccHHHH-HHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHH
Confidence 211 1111 23677888888774 89999999999999853
No 50
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.61 E-value=3.3e-14 Score=139.67 Aligned_cols=296 Identities=18% Similarity=0.181 Sum_probs=213.1
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhh
Q 014945 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 150 (415)
Q Consensus 71 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~ 150 (415)
+.+..+.+.|++++...+..++.-+..+.... .+. +.+++.+++++.+++ ..++..+...+.+++..+++..
T Consensus 13 ~e~~~i~~~L~~~~~~~k~~~~~kli~~~~~G-~d~------~~~~~~vi~l~~s~~-~~~Krl~yl~l~~~~~~~~e~~ 84 (591)
T 2vgl_B 13 GEIFELKAELNNEKKEKRKEAVKKVIAAMTVG-KDV------SSLFPDVVNCMQTDN-LELKKLVYLYLMNYAKSQPDMA 84 (591)
T ss_dssp SHHHHHHHHTTSSCHHHHHHHHHHHHHHHHTT-CCC------GGGHHHHHHTTSSSC-HHHHHHHHHHHHHHHHHSHHHH
T ss_pred ChHHHHHHHHcCCCHHHHHHHHHHHHHHHHCC-CCh------HHHHHHHHHHhCCCC-HHHHHHHHHHHHHHcccCchHH
Confidence 56788899999999888888776665554433 222 224677888999888 8999998888888877544432
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhC
Q 014945 151 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 230 (415)
Q Consensus 151 ~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~ 230 (415)
. -+++.+.+-|.++++.++..|+.+|+++. .+..... .++.+..++ .+.++.+++.|++++..++..
T Consensus 85 ~-----l~~n~l~kdL~~~n~~ir~~AL~~L~~i~--~~~~~~~-----l~~~l~~~L-~d~~~~VRk~A~~al~~i~~~ 151 (591)
T 2vgl_B 85 I-----MAVNSFVKDCEDPNPLIRALAVRTMGCIR--VDKITEY-----LCEPLRKCL-KDEDPYVRKTAAVCVAKLHDI 151 (591)
T ss_dssp H-----TTHHHHGGGSSSSSHHHHHHHHHHHHTCC--SGGGHHH-----HHHHHHHHS-SCSCHHHHHHHHHHHHHHHHS
T ss_pred H-----HHHHHHHHHcCCCCHHHHHHHHHHHHcCC--hHHHHHH-----HHHHHHHHc-CCCChHHHHHHHHHHHHHHhh
Confidence 1 24678888899999999999999999996 3322222 456788888 788999999999999999986
Q ss_pred CCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHh
Q 014945 231 KPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI 310 (415)
Q Consensus 231 ~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl 310 (415)
.+... ...+.+|.+..+|.++|+.|+..|++++..++...++.....+..+.+..|+..+.+.++..+...+++++.+
T Consensus 152 ~p~~~--~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l 229 (591)
T 2vgl_B 152 NAQMV--EDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNY 229 (591)
T ss_dssp SCCCH--HHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTS
T ss_pred Chhhc--ccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHh
Confidence 54322 2247889999999999999999999999999876542200001123466777777777888888999999998
Q ss_pred hcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcC---CHHHHHHHHHcCCHHHHHHHhccCCHHHHHH
Q 014945 311 VTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG---NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKE 387 (415)
Q Consensus 311 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~---~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~ 387 (415)
+..++.... .+++.+..++++. ++.|+.+|++++..+... +++..+.+.. .+.+.|+.++. +++.+|..
T Consensus 230 ~~~~~~~~~-----~~l~~l~~~l~~~-~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~-~~~~~L~~L~~-~d~~vr~~ 301 (591)
T 2vgl_B 230 NPKDDREAQ-----SICERVTPRLSHA-NSAVVLSAVKVLMKFLELLPKDSDYYNMLLK-KLAPPLVTLLS-GEPEVQYV 301 (591)
T ss_dssp CCCSHHHHH-----HHHHHHTTCSCSS-TTHHHHHHHHHHHHSCCSCCBTTBSHHHHHH-HTHHHHHHHTT-SCHHHHHH
T ss_pred CCCChHHHH-----HHHHHHHHHHcCC-ChHHHHHHHHHHHHHhhccCCCHHHHHHHHH-HHHHHHHHHhc-CCccHHHH
Confidence 866554333 4577888888988 999999999999998742 3333333332 25556655443 56666666
Q ss_pred HHHHHHHHhC
Q 014945 388 AAWAISNATS 397 (415)
Q Consensus 388 a~~aL~nl~~ 397 (415)
|+.+|..+..
T Consensus 302 aL~~l~~i~~ 311 (591)
T 2vgl_B 302 ALRNINLIVQ 311 (591)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666666653
No 51
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.60 E-value=5.9e-14 Score=119.17 Aligned_cols=189 Identities=20% Similarity=0.229 Sum_probs=158.4
Q ss_pred CCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCc
Q 014945 156 HGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPL 235 (415)
Q Consensus 156 ~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~ 235 (415)
.+.++.|+.+|.++++.++..|+++|+.+.. .+.++.|+..+ .+.+..++..++++|..+..
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l-~~~~~~vr~~a~~aL~~~~~------ 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKAL-KDEDAWVRRAAADALGQIGD------ 79 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHT-TCSCHHHHHHHHHHHHHHCC------
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHH-cCCCHHHHHHHHHHHHhhCC------
Confidence 3578999999999999999999999998753 23678899999 67789999999999998853
Q ss_pred hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCCh
Q 014945 236 FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD 315 (415)
Q Consensus 236 ~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~ 315 (415)
...++.|..+|.++++.++..++++|+.+.. .+.++.|..+|.++++.++..++++|+++.. +
T Consensus 80 ----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--~ 142 (211)
T 3ltm_A 80 ----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--E 142 (211)
T ss_dssp ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--G
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--H
Confidence 3678999999999999999999999998853 2467889999999999999999999999853 2
Q ss_pred HHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHH
Q 014945 316 MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNA 395 (415)
Q Consensus 316 ~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl 395 (415)
..++.|..++.++ ++.+|..|+++|+.+.. +. .++.|..++.++++.||..|.++|.++
T Consensus 143 ---------~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~--~~---------~~~~L~~~l~d~~~~vr~~A~~aL~~~ 201 (211)
T 3ltm_A 143 ---------RAVEPLIKALKDE-DGWVRQSAADALGEIGG--ER---------VRAAMEKLAETGTGFARKVAVNYLETH 201 (211)
T ss_dssp ---------GGHHHHHHHTTCS-SHHHHHHHHHHHHHHCS--HH---------HHHHHHHHHHHCCHHHHHHHHHHHHC-
T ss_pred ---------HHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc--hh---------HHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 4678899999888 99999999999999953 22 577888889999999999999999999
Q ss_pred hCCCC
Q 014945 396 TSGGS 400 (415)
Q Consensus 396 ~~~~~ 400 (415)
.....
T Consensus 202 ~~~~~ 206 (211)
T 3ltm_A 202 KSFNH 206 (211)
T ss_dssp -----
T ss_pred CCCCC
Confidence 86644
No 52
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.60 E-value=1.2e-13 Score=116.33 Aligned_cols=185 Identities=21% Similarity=0.241 Sum_probs=158.4
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCch
Q 014945 157 GAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLF 236 (415)
Q Consensus 157 g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~ 236 (415)
+..+.++.+|.++++.++..|+++|+.+.. .+.++.|+..+ .+.++.++..++++|..+..
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l-~~~~~~vr~~a~~~L~~~~~------- 74 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKAL-KDEDAWVRRAAADALGQIGD------- 74 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC-------
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHH-cCCCHHHHHHHHHHHHhhCC-------
Confidence 457899999999999999999999998753 13678899999 77889999999999998753
Q ss_pred hhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChH
Q 014945 237 EQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM 316 (415)
Q Consensus 237 ~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~ 316 (415)
...++.|..+|.++++.++..++++|+.+.. ...++.|..+|.++++.++..++++|+.+..
T Consensus 75 ---~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---- 136 (201)
T 3ltj_A 75 ---ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD---- 136 (201)
T ss_dssp ---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC----
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----
Confidence 2578999999999999999999999998753 2367889999999999999999999999853
Q ss_pred HHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHh
Q 014945 317 QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT 396 (415)
Q Consensus 317 ~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~ 396 (415)
...++.|..++.++ ++.+|..|+++|+.+. .++ .++.|..++.++++.++..|.++|.++-
T Consensus 137 -------~~~~~~L~~~l~d~-~~~vr~~A~~aL~~~~--~~~---------~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 137 -------ERAVEPLIKALKDE-DGWVRQSAADALGEIG--GER---------VRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp -------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHC--SHH---------HHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred -------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhC--chh---------HHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 24678899999988 9999999999999994 333 5678888899999999999999999875
Q ss_pred C
Q 014945 397 S 397 (415)
Q Consensus 397 ~ 397 (415)
.
T Consensus 198 ~ 198 (201)
T 3ltj_A 198 S 198 (201)
T ss_dssp -
T ss_pred h
Confidence 3
No 53
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.60 E-value=1.6e-13 Score=135.35 Aligned_cols=293 Identities=18% Similarity=0.146 Sum_probs=195.0
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhH
Q 014945 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 151 (415)
Q Consensus 72 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~ 151 (415)
....+++.+.+++...+..+...+..++..+ -+..+ -+++.|.+-|++++ +.++..|+++|+++.. ++...
T Consensus 71 ~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~----~e~~~--l~in~l~kDL~~~n-~~vr~lAL~~L~~i~~--~~~~~ 141 (618)
T 1w63_A 71 GQLECLKLIASQKFTDKRIGYLGAMLLLDER----QDVHL--LMTNCIKNDLNHST-QFVQGLALCTLGCMGS--SEMCR 141 (618)
T ss_dssp GHHHHHHHHHSSSHHHHHHHHHHHHHHCCCC----HHHHH--HHHHHHHHHHSCSS-SHHHHHHHHHHHHHCC--HHHHH
T ss_pred hHHHHHHHHcCCchHHHHHHHHHHHHHhCCC----cHHHH--HHHHHHHHhcCCCC-HhHHHHHHHHHHhcCC--HHHHH
Confidence 5678888899999999988888888876422 12111 14788888999888 8999999999999985 33222
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCC
Q 014945 152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK 231 (415)
Q Consensus 152 ~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~ 231 (415)
.+++.+..++.++++.++..|+.+++++....|+.. .+.++.+..++ .+.++.++..|++++..++...
T Consensus 142 -----~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v-----~~~~~~l~~lL-~D~d~~V~~~Al~~L~~i~~~~ 210 (618)
T 1w63_A 142 -----DLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM-----EMFLPATKNLL-NEKNHGVLHTSVVLLTEMCERS 210 (618)
T ss_dssp -----HHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG-----GGGGGGTTTST-TCCCHHHHHHHHHHHHHHCCSH
T ss_pred -----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH-----HHHHHHHHHHh-CCCCHhHHHHHHHHHHHHHHhC
Confidence 457888899999999999999999999987666432 24667777777 6788999999999999998653
Q ss_pred CCCchhhhhchHHHHHHhhcC---------------CChhHHHHHHHHHHHhccCChHHHHHHH----------------
Q 014945 232 PQPLFEQTRPALPALERLIHS---------------NDDEVLTDACWALSYLSDGTNDKIQAVI---------------- 280 (415)
Q Consensus 232 ~~~~~~~~~~~l~~l~~lL~~---------------~d~~v~~~a~~~l~~l~~~~~~~~~~~~---------------- 280 (415)
+.. .......+|.++.+|.+ .++..+..++.+++.++..++.....+.
T Consensus 211 ~~~-~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~ 289 (618)
T 1w63_A 211 PDM-LAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNV 289 (618)
T ss_dssp HHH-HHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTH
T ss_pred hHH-HHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccch
Confidence 221 12334566666665542 3677777777777777765433211000
Q ss_pred ---------------------HcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCc
Q 014945 281 ---------------------EAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYK 339 (415)
Q Consensus 281 ---------------------~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~ 339 (415)
...+++.|..+|.+.++.++..|+.+|+.++...+.. +. ...+.++.++.++ +
T Consensus 290 ~~aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~----~~-~~~~~i~~~l~d~-d 363 (618)
T 1w63_A 290 GNAILYETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNA----VQ-RHRSTIVDCLKDL-D 363 (618)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHH----HG-GGHHHHHHGGGSS-C
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHH----HH-HHHHHHHHHccCC-C
Confidence 0013455555666666666666666666666543321 11 2445666666666 6
Q ss_pred cchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhCC
Q 014945 340 KSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSG 398 (415)
Q Consensus 340 ~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~ 398 (415)
..+|..|..++..++... ++.. +++.|...+.+.+.+++..++.+++.++..
T Consensus 364 ~~Ir~~alelL~~l~~~~--nv~~-----iv~eL~~~l~~~d~e~r~~~v~~I~~la~k 415 (618)
T 1w63_A 364 VSIKRRAMELSFALVNGN--NIRG-----MMKELLYFLDSCEPEFKADCASGIFLAAEK 415 (618)
T ss_dssp HHHHHHHHHHHHHHCCSS--STHH-----HHHHHHHHHHHCCHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHcccc--cHHH-----HHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 677777777777776531 1111 345566666667777777777777777754
No 54
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.57 E-value=1.4e-14 Score=149.04 Aligned_cols=324 Identities=13% Similarity=0.152 Sum_probs=222.0
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhh--H
Q 014945 74 PAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT--R 151 (415)
Q Consensus 74 ~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~--~ 151 (415)
+.+.+.+.+.++..+..|+.++..++...........+. .+++.++..+.+++ +.+|..++|+++.++....... .
T Consensus 372 ~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~-~il~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~~~~~~ 449 (861)
T 2bpt_A 372 EFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVH-QALPSILNLMNDQS-LQVKETTAWCIGRIADSVAESIDPQ 449 (861)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH-HHHHHHHHGGGCSC-HHHHHHHHHHHHHHHHHHGGGSCTT
T ss_pred HHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHHHHHcCCCc-HHHHHHHHHHHHHHHHHhhhhcCCH
Confidence 445556678889999999999999875421122222222 47889999999888 9999999999999886321100 0
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCC-----chhHHHHHhcCChHHHHHHhcc-chhHhHHHHHHHHHH
Q 014945 152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS-----PKCRDLVLSNGALMPLLAQFNE-HAKLSMLRNATWTLS 225 (415)
Q Consensus 152 ~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~-----~~~~~~~~~~g~i~~L~~~l~~-~~~~~~~~~a~~~l~ 225 (415)
.. -..+++.++..+.++ +.++..|++++.+++... ......+ ..+++.|+..+.. +.+..++..++.++.
T Consensus 450 ~~-~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~d~~~~vr~~a~~al~ 525 (861)
T 2bpt_A 450 QH-LPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY--PALVDGLIGAANRIDNEFNARASAFSALT 525 (861)
T ss_dssp TT-HHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH--HHHHHHHHHHHTCSCCGGGHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH--HHHHHHHHHHHhCcCcchHHHHHHHHHHH
Confidence 00 114578888888775 899999999999987431 1121111 1246677777743 334789999999999
Q ss_pred HhhhCCCCCchhhhhchHHHHHHhhcCC---------------ChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHH
Q 014945 226 NFCRGKPQPLFEQTRPALPALERLIHSN---------------DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVE 290 (415)
Q Consensus 226 ~l~~~~~~~~~~~~~~~l~~l~~lL~~~---------------d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ 290 (415)
.++...+.........++|.++..+... ...++..++.++..++........... ..+++.+..
T Consensus 526 ~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~l~~~l~~ 604 (861)
T 2bpt_A 526 TMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVA-DMLMGLFFR 604 (861)
T ss_dssp HHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGH-HHHHHHHHH
T ss_pred HHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH-HHHHHHHHH
Confidence 9998765444444566777777666421 345778899999988865443222122 246778888
Q ss_pred hcCCCCh-hhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCC
Q 014945 291 LLRHPSP-SVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGI 369 (415)
Q Consensus 291 lL~~~~~-~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~ 369 (415)
.+.+.+. .++..++.+++.++..........+. .++|.+...+.++ ++.++..++++++.++....+.....+. .+
T Consensus 605 ~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l~~~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~-~l 681 (861)
T 2bpt_A 605 LLEKKDSAFIEDDVFYAISALAASLGKGFEKYLE-TFSPYLLKALNQV-DSPVSITAVGFIADISNSLEEDFRRYSD-AM 681 (861)
T ss_dssp HHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHH-HHHHHHHHHHHCT-TSHHHHHHHHHHHHHHHHTGGGGHHHHH-HH
T ss_pred HHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHhchhccchHH-HH
Confidence 8877766 89999999999998654333322232 4788899999777 8899999999999998643333333333 37
Q ss_pred HHHHHHHhccCC--HHHHHHHHHHHHHHhCCCCHHHHHHH
Q 014945 370 IGPLVNLLLNAE--FEIKKEAAWAISNATSGGSNEQIKYK 407 (415)
Q Consensus 370 i~~L~~~l~~~~--~~v~~~a~~aL~nl~~~~~~~~~~~l 407 (415)
++.++..+.+++ ++++..++.+++.++...+.....|+
T Consensus 682 ~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l 721 (861)
T 2bpt_A 682 MNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYL 721 (861)
T ss_dssp HHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred HHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHH
Confidence 888888888754 88999999999999875444443433
No 55
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.57 E-value=1.5e-13 Score=116.62 Aligned_cols=187 Identities=21% Similarity=0.220 Sum_probs=158.2
Q ss_pred cCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhH
Q 014945 113 SGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 192 (415)
Q Consensus 113 ~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~ 192 (415)
.+.++.|+.+|++++ +.++..|++.|+.+.. .+.++.|+.++.++++.++..++++|+.+..
T Consensus 18 ~~~~~~L~~~L~~~~-~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------ 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDS-YYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------ 79 (211)
T ss_dssp GGGHHHHHHHTTCSS-HHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC------
T ss_pred HhHHHHHHHHHcCCC-HHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------
Confidence 457899999999888 9999999999998764 2578999999999999999999999999852
Q ss_pred HHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCC
Q 014945 193 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGT 272 (415)
Q Consensus 193 ~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~ 272 (415)
.+.++.|+..+ .++++.++..++++|..+.. ...++.|..++.++++.++..++++|+.+..
T Consensus 80 -----~~~~~~L~~~l-~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-- 141 (211)
T 3ltm_A 80 -----ERAVEPLIKAL-KDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD-- 141 (211)
T ss_dssp -----GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--
T ss_pred -----HHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--
Confidence 23678888888 77889999999999998853 3578999999999999999999999999853
Q ss_pred hHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHH
Q 014945 273 NDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISN 352 (415)
Q Consensus 273 ~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~n 352 (415)
...++.|..++.++++.++..++.+|+.+.. + ..++.|..++.++ ++.||..|..+|.+
T Consensus 142 ---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--~---------~~~~~L~~~l~d~-~~~vr~~A~~aL~~ 200 (211)
T 3ltm_A 142 ---------ERAVEPLIKALKDEDGWVRQSAADALGEIGG--E---------RVRAAMEKLAETG-TGFARKVAVNYLET 200 (211)
T ss_dssp ---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS--H---------HHHHHHHHHHHHC-CHHHHHHHHHHHHC
T ss_pred ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--h---------hHHHHHHHHHhCC-CHHHHHHHHHHHHh
Confidence 2367889999999999999999999999853 2 3467888999888 99999999999999
Q ss_pred HhcC
Q 014945 353 ITAG 356 (415)
Q Consensus 353 l~~~ 356 (415)
+...
T Consensus 201 ~~~~ 204 (211)
T 3ltm_A 201 HKSF 204 (211)
T ss_dssp ----
T ss_pred cCCC
Confidence 9874
No 56
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.57 E-value=8.9e-14 Score=143.13 Aligned_cols=318 Identities=16% Similarity=0.166 Sum_probs=220.0
Q ss_pred HHHHHHhhcCC--CHHHHHHHHHHHHHHhccCCCCchh-HHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchh
Q 014945 73 LPAMVAGVWSD--DRNIQLDATTQFRKLLSIERSPPIN-EVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN 149 (415)
Q Consensus 73 i~~l~~~l~~~--~~~~~~~a~~~l~~l~~~~~~~~~~-~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~ 149 (415)
++.+...+.++ ++.++..|+.++..++..- ..... ......+++.|...+.+++ +.++..++.+|..++...++.
T Consensus 181 l~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~-~~~~~~~~~~~~ll~~l~~~~~~~~-~~~r~~a~~~l~~l~~~~~~~ 258 (861)
T 2bpt_A 181 LIAIVQGAQSTETSKAVRLAALNALADSLIFI-KNNMEREGERNYLMQVVCEATQAED-IEVQAAAFGCLCKIMSKYYTF 258 (861)
T ss_dssp HHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGC-HHHHTSHHHHHHHHHHHHHHHTCSC-HHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHH-HHHccChhHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHHHHH
Confidence 45556666766 7899999999998875321 01100 0111235777778888877 899999999999998754443
Q ss_pred hHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCch-----------------hHHHHHhcCChHHHHHHhccc-
Q 014945 150 TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK-----------------CRDLVLSNGALMPLLAQFNEH- 211 (415)
Q Consensus 150 ~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~-----------------~~~~~~~~g~i~~L~~~l~~~- 211 (415)
....+...+++.+...+.+.++.++..++.++..++..... .-.... ...++.++..+...
T Consensus 259 ~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~il~~ll~~l~~~~ 337 (861)
T 2bpt_A 259 MKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSI-KDVVPNLLNLLTRQN 337 (861)
T ss_dssp CHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHH-HHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHH-HHHHHHHHHHHHhcc
Confidence 33333325677888888888999999999999988754211 101111 23566777777431
Q ss_pred -----hhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCCh-HHHHHHHHcCcH
Q 014945 212 -----AKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTN-DKIQAVIEAGVC 285 (415)
Q Consensus 212 -----~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~-~~~~~~~~~~~i 285 (415)
.+..++..+..++..++...+ ......++|.+...+.+.+..++..++++++.++.+.. ......+. .++
T Consensus 338 ~d~~d~~~~~r~~a~~~L~~l~~~~~---~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~-~il 413 (861)
T 2bpt_A 338 EDPEDDDWNVSMSAGACLQLFAQNCG---NHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVH-QAL 413 (861)
T ss_dssp CC-CCCCCHHHHHHHHHHHHHHHHHG---GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH-HHH
T ss_pred cccccccCcHHHHHHHHHHHHHHHcc---HhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHH-HHH
Confidence 234688899999999887533 22345677888888888899999999999999997753 43333333 478
Q ss_pred HHHHHhcCCCChhhHHHHHHHHHHhhcCChHHH--HHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCC----HH
Q 014945 286 PRLVELLRHPSPSVLIPALRTVGNIVTGDDMQT--QCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN----VN 359 (415)
Q Consensus 286 ~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~--~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~----~~ 359 (415)
+.++..+.++++.++..+++++|+++....... ... -..+++.++..+.+. +.++..|+|++.+++.+. ++
T Consensus 414 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~-~~~~l~~l~~~l~~~--~~v~~~a~~al~~l~~~~~~~~~~ 490 (861)
T 2bpt_A 414 PSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQH-LPGVVQACLIGLQDH--PKVATNCSWTIINLVEQLAEATPS 490 (861)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTT-HHHHHHHHHHHHTSC--HHHHHHHHHHHHHHHHHHSSSSSC
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHH-HHHHHHHHHHHhccC--hHHHHHHHHHHHHHHHhcccccch
Confidence 899999999999999999999999986421100 000 114577788888654 789999999999998631 12
Q ss_pred HHHHHHHcCCHHHHHHHhccCC--HHHHHHHHHHHHHHhCCCCH
Q 014945 360 QIQAIIEAGIIGPLVNLLLNAE--FEIKKEAAWAISNATSGGSN 401 (415)
Q Consensus 360 ~~~~l~~~~~i~~L~~~l~~~~--~~v~~~a~~aL~nl~~~~~~ 401 (415)
.....+. .+++.|+..+.+.+ +.++..++.+++.++...+.
T Consensus 491 ~l~~~~~-~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~ 533 (861)
T 2bpt_A 491 PIYNFYP-ALVDGLIGAANRIDNEFNARASAFSALTTMVEYATD 533 (861)
T ss_dssp GGGGGHH-HHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCG
T ss_pred hhHHHHH-HHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcch
Confidence 1222222 36788888887533 78999999999999876554
No 57
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.56 E-value=8.7e-14 Score=132.67 Aligned_cols=278 Identities=17% Similarity=0.215 Sum_probs=195.2
Q ss_pred ccHHHHHHhhcCC--CHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCC-ChHHHHHHHHHHHHHhCCCc
Q 014945 71 ESLPAMVAGVWSD--DRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDD-FPQLQFEAAWALTNIASGTS 147 (415)
Q Consensus 71 ~~i~~l~~~l~~~--~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~-~~~i~~~a~~~L~~l~~~~~ 147 (415)
+.++.+++.+.++ ++..+..|+.+|..+............. ..+++.++.++.++. ++.+|..|+++++++...-.
T Consensus 128 ~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~ 206 (462)
T 1ibr_B 128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTK 206 (462)
T ss_dssp THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTH
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3578888899888 8999999999999987532111111121 247889999999872 38999999999999765322
Q ss_pred hhhH-HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHH
Q 014945 148 ENTR-VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSN 226 (415)
Q Consensus 148 ~~~~-~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~ 226 (415)
+... .....-+++.+...+.++++.++..++++|..++...+..-...+..++++.++..+ .+.+..++..+++++..
T Consensus 207 ~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~v~~~a~~~l~~ 285 (462)
T 1ibr_B 207 ANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAM-KSDIDEVALQGIEFWSN 285 (462)
T ss_dssp HHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHH-HCSSHHHHHHHHHHHHH
T ss_pred HhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCchHHHHHHHHHHHH
Confidence 1110 001111466777778888999999999999999865443111111114566666666 66788899999999999
Q ss_pred hhhCC-------------------CCCch--hhhhchHHHHHHhhcCC-------ChhHHHHHHHHHHHhccCChHHHHH
Q 014945 227 FCRGK-------------------PQPLF--EQTRPALPALERLIHSN-------DDEVLTDACWALSYLSDGTNDKIQA 278 (415)
Q Consensus 227 l~~~~-------------------~~~~~--~~~~~~l~~l~~lL~~~-------d~~v~~~a~~~l~~l~~~~~~~~~~ 278 (415)
++... ..... .....++|.++..+... +..++..++.++..++...++.
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~--- 362 (462)
T 1ibr_B 286 VCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD--- 362 (462)
T ss_dssp HHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTT---
T ss_pred HHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHH---
Confidence 88642 01111 12355677777777432 3578999999999988654321
Q ss_pred HHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCCh-HHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcC
Q 014945 279 VIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD-MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG 356 (415)
Q Consensus 279 ~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~-~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~ 356 (415)
++ ..+++.+...+.++++.++..|+.++|.++.+.. ......+ ..++|.++..+.++ ++.||..|+|+|++++..
T Consensus 363 ~~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l-~~~~~~l~~~l~d~-~~~Vr~~a~~~l~~~~~~ 438 (462)
T 1ibr_B 363 IV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDP-SVVVRDTAAWTVGRICEL 438 (462)
T ss_dssp HH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT-TTHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHH-HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHh
Confidence 22 2467888889999999999999999999998754 2111111 46899999999998 999999999999999973
No 58
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.55 E-value=3e-13 Score=113.78 Aligned_cols=185 Identities=22% Similarity=0.228 Sum_probs=158.5
Q ss_pred cCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhH
Q 014945 113 SGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 192 (415)
Q Consensus 113 ~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~ 192 (415)
.+..+.++++|++++ +.++..|+++|+.+.. .+.++.|+.+|.++++.++..++++|+.+.. +
T Consensus 13 ~~~~~~~i~~L~~~~-~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~--~--- 75 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDS-YYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--E--- 75 (201)
T ss_dssp HHHHHHHHHHTTCSC-HHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--G---
T ss_pred CcchHHHHHHhcCCC-HHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--H---
Confidence 356799999999999 9999999999998764 1468999999999999999999999999842 1
Q ss_pred HHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCC
Q 014945 193 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGT 272 (415)
Q Consensus 193 ~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~ 272 (415)
+.++.|+..+ .++++.++..++++|..+.. ...++.|..++.++++.++..++++++.+..
T Consensus 76 ------~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-- 136 (201)
T 3ltj_A 76 ------RAVEPLIKAL-KDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD-- 136 (201)
T ss_dssp ------GGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC--
T ss_pred ------HHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--
Confidence 3678888888 77899999999999998753 3578899999999999999999999999853
Q ss_pred hHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHH
Q 014945 273 NDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISN 352 (415)
Q Consensus 273 ~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~n 352 (415)
.+.++.|..++.++++.++..|+++|+.+.. + ..++.|..++.++ ++.+|..|.++|.+
T Consensus 137 ---------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~--~---------~~~~~L~~~l~d~-~~~vr~~A~~aL~~ 195 (201)
T 3ltj_A 137 ---------ERAVEPLIKALKDEDGWVRQSAADALGEIGG--E---------RVRAAMEKLAETG-TGFARKVAVNYLET 195 (201)
T ss_dssp ---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS--H---------HHHHHHHHHHHHC-CHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--h---------hHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence 3467889999999999999999999999932 2 2567888899888 99999999999998
Q ss_pred Hh
Q 014945 353 IT 354 (415)
Q Consensus 353 l~ 354 (415)
+.
T Consensus 196 l~ 197 (201)
T 3ltj_A 196 HK 197 (201)
T ss_dssp CC
T ss_pred HH
Confidence 75
No 59
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.52 E-value=3e-13 Score=139.42 Aligned_cols=317 Identities=18% Similarity=0.222 Sum_probs=220.9
Q ss_pred HHHHHHhhcCC--CHHHHHHHHHHHHHHhccCCCCch-hHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchh
Q 014945 73 LPAMVAGVWSD--DRNIQLDATTQFRKLLSIERSPPI-NEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN 149 (415)
Q Consensus 73 i~~l~~~l~~~--~~~~~~~a~~~l~~l~~~~~~~~~-~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~ 149 (415)
++.+.+.+.++ ++.++..|+.++..++..- .... .......+++.+...+.+.+ ++++..++++|..++...+..
T Consensus 174 l~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~-~~~~~~~~~~~~il~~l~~~~~~~~-~~vr~~a~~~l~~l~~~~~~~ 251 (876)
T 1qgr_A 174 LTAIIQGMRKEEPSNNVKLAATNALLNSLEFT-KANFDKESERHFIMQVVCEATQCPD-TRVRVAALQNLVKIMSLYYQY 251 (876)
T ss_dssp HHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGC-HHHHTSHHHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHSGGG
T ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHhHHH
Confidence 34566667665 6889999999999886431 1111 11111236777888887777 899999999999999865655
Q ss_pred hHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCch---------------------hHHHHHhcCChHHHHHHh
Q 014945 150 TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK---------------------CRDLVLSNGALMPLLAQF 208 (415)
Q Consensus 150 ~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~---------------------~~~~~~~~g~i~~L~~~l 208 (415)
....+...+++.++..+.+.++.++..+++++..++..... ...... ...++.++..+
T Consensus 252 ~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ll~~ll~~l 330 (876)
T 1qgr_A 252 METYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGAL-QYLVPILTQTL 330 (876)
T ss_dssp CHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHH-HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHH-HHHhHHHHHHh
Confidence 44445457888888888888999999999999988743110 000001 12456666666
Q ss_pred cc------chhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCCh-HHHHHHHH
Q 014945 209 NE------HAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTN-DKIQAVIE 281 (415)
Q Consensus 209 ~~------~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~-~~~~~~~~ 281 (415)
.. +.+..++..+..++..++...+ ......++|.+...+.++++.++..++++++.++.+.. +.....+
T Consensus 331 ~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~---~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~- 406 (876)
T 1qgr_A 331 TKQDENDDDDDWNPCKAAGVCLMLLATCCE---DDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV- 406 (876)
T ss_dssp TCCCSSCCTTCCCHHHHHHHHHHHHHHHHG---GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-
T ss_pred hcccccccccccHHHHHHHHHHHHHHHHCc---HhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-
Confidence 32 2345788899999998887543 13356778888888888999999999999999997754 3333333
Q ss_pred cCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHH--HHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCH-
Q 014945 282 AGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQT--QCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV- 358 (415)
Q Consensus 282 ~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~--~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~- 358 (415)
..+++.++..|.++++.++..|++++++++...+... ...+ ..+++.++..+.+ ++.++..++|++++++....
T Consensus 407 ~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l-~~~l~~l~~~l~~--~~~v~~~a~~al~~l~~~~~~ 483 (876)
T 1qgr_A 407 IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYL-APLLQCLIEGLSA--EPRVASNVCWAFSSLAEAAYE 483 (876)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTH-HHHHHHHHHHTTS--CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHH-HHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhhh
Confidence 3578999999999999999999999999997643211 0011 1456778888865 37899999999999986321
Q ss_pred -------------HHHHHHHHcCCHHHHHHHhccC---CHHHHHHHHHHHHHHhCCCC
Q 014945 359 -------------NQIQAIIEAGIIGPLVNLLLNA---EFEIKKEAAWAISNATSGGS 400 (415)
Q Consensus 359 -------------~~~~~l~~~~~i~~L~~~l~~~---~~~v~~~a~~aL~nl~~~~~ 400 (415)
+.....++ .+++.|+..+... +..++..+..+++.++...+
T Consensus 484 ~~~~~~~~~~~~~~~l~~~~~-~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~ 540 (876)
T 1qgr_A 484 AADVADDQEEPATYCLSSSFE-LIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSA 540 (876)
T ss_dssp TTSCTTSCCCCCCCSSTTTHH-HHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCC
T ss_pred ccccccccccccchhhhHhHH-HHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCc
Confidence 00112222 3678888888764 35788889999998876543
No 60
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.52 E-value=5.2e-12 Score=124.47 Aligned_cols=301 Identities=15% Similarity=0.171 Sum_probs=212.4
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHH
Q 014945 74 PAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVV 153 (415)
Q Consensus 74 ~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~ 153 (415)
..+.+.+++++...+..++.-+..+.... .+. ..+....++++.+++ ...+.-+...+..++..+++....
T Consensus 37 ~~ir~~l~~~~~~~k~~~l~kli~~~~~G-~d~------~~~~~~vik~~~s~~-~~~Krl~Yl~~~~~~~~~~e~~~l- 107 (618)
T 1w63_A 37 AAIRSSFREEDNTYRCRNVAKLLYMHMLG-YPA------HFGQLECLKLIASQK-FTDKRIGYLGAMLLLDERQDVHLL- 107 (618)
T ss_dssp HHHHHHHTTTCTTTHHHHHHHHHHHHHTT-CCC------GGGHHHHHHHHHSSS-HHHHHHHHHHHHHHCCCCHHHHHH-
T ss_pred HHHHHHhhCCCHHHHHHHHHHHHHHHHcC-CCC------cchHHHHHHHHcCCc-hHHHHHHHHHHHHHhCCCcHHHHH-
Confidence 44455555555555555555444433322 221 224667778888888 888988888999998865543222
Q ss_pred HhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCC
Q 014945 154 IDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQ 233 (415)
Q Consensus 154 ~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~ 233 (415)
+++.|.+-|.++++.++..|+++|+++.. +. . . ...++.+...+ .+.++.+++.|+.++.++....|.
T Consensus 108 ----~in~l~kDL~~~n~~vr~lAL~~L~~i~~--~~---~-~-~~l~~~l~~~L-~~~~~~VRk~A~~al~~l~~~~p~ 175 (618)
T 1w63_A 108 ----MTNCIKNDLNHSTQFVQGLALCTLGCMGS--SE---M-C-RDLAGEVEKLL-KTSNSYLRKKAALCAVHVIRKVPE 175 (618)
T ss_dssp ----HHHHHHHHHSCSSSHHHHHHHHHHHHHCC--HH---H-H-HHHHHHHHHHH-HSCCHHHHHHHHHHHHHHHHHCGG
T ss_pred ----HHHHHHHhcCCCCHhHHHHHHHHHHhcCC--HH---H-H-HHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHChH
Confidence 37788888999999999999999999973 22 1 1 23567788888 778999999999999999986542
Q ss_pred CchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCC---------------CChh
Q 014945 234 PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH---------------PSPS 298 (415)
Q Consensus 234 ~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~---------------~~~~ 298 (415)
....+++.+..+|.+.|+.|+..|++++..++..+++....+ ..+++.++.+|.+ .++.
T Consensus 176 ----~v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~ 249 (618)
T 1w63_A 176 ----LMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPF 249 (618)
T ss_dssp ----GGGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHH
T ss_pred ----HHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCCCh
Confidence 335788889999999999999999999999997765432222 2566777766542 3666
Q ss_pred hHHHHHHHHHHhhcCChHHHHH-------H----------------------HH--------CCChHHHHHHhcCCCccc
Q 014945 299 VLIPALRTVGNIVTGDDMQTQC-------I----------------------IN--------HQALPCLLDLLTQNYKKS 341 (415)
Q Consensus 299 v~~~a~~~l~nl~~~~~~~~~~-------~----------------------~~--------~~~l~~L~~ll~~~~~~~ 341 (415)
.+..++++|+.++..++..... + +. ..+++.|..++.++ ++.
T Consensus 250 ~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~-d~~ 328 (618)
T 1w63_A 250 LQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLRVLAINILGRFLLNN-DKN 328 (618)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCS-STT
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCC-CCc
Confidence 7777888888877654421110 0 00 02456777888887 889
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCH-HHHHHH
Q 014945 342 IKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSN-EQIKYK 407 (415)
Q Consensus 342 v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~-~~~~~l 407 (415)
+|..|..+|+.++...+.. +. ...+.++.++.+++..+|..|+.+|..++...+- ..+..|
T Consensus 329 vr~~aL~~L~~i~~~~p~~----~~-~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~nv~~iv~eL 390 (618)
T 1w63_A 329 IRYVALTSLLKTVQTDHNA----VQ-RHRSTIVDCLKDLDVSIKRRAMELSFALVNGNNIRGMMKEL 390 (618)
T ss_dssp THHHHHHHHHHHHHHHHHH----HG-GGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSSTHHHHHHH
T ss_pred hHHHHHHHHHHHHhhCHHH----HH-HHHHHHHHHccCCChhHHHHHHHHHHHHcccccHHHHHHHH
Confidence 9999999999988754432 22 2567888899999999999999999999987652 333444
No 61
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.47 E-value=9.1e-13 Score=140.64 Aligned_cols=315 Identities=15% Similarity=0.159 Sum_probs=221.8
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhH
Q 014945 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 151 (415)
Q Consensus 72 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~ 151 (415)
.++.+++.+.+.|++.+..|...|.+.+... ......-....+++.+++.+.+++ +.+|..|+.+|+.++...++.
T Consensus 7 ~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~-~~~~~~~~~~~il~~Ll~~L~d~~-~~vR~~A~~~L~~l~~~~~~~-- 82 (1230)
T 1u6g_C 7 HISNLLEKMTSSDKDFRFMATNDLMTELQKD-SIKLDDDSERKVVKMILKLLEDKN-GEVQNLAVKCLGPLVSKVKEY-- 82 (1230)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSS-CCSCCTTHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHTTSCHH--
T ss_pred HHHHHHHhcCCCCHhHHHHHHHHHHHHHccc-ccCCChhHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhCCHH--
Confidence 5789999999999999999999998876432 111111122346788999999877 999999999999999765441
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchh------HHHHHhcCChHHHHHHhccchhHhHHHHHHHHHH
Q 014945 152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC------RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLS 225 (415)
Q Consensus 152 ~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~------~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~ 225 (415)
.+ ..+++.++..+.++++.+|..|+.+|+.++...+.. ... .....++.|+..+.++.+..++..++.++.
T Consensus 83 ~~--~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~-~~~~llp~L~~~l~~~~~~~~~~~al~~l~ 159 (1230)
T 1u6g_C 83 QV--ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAAN-VCKKITGRLTSAIAKQEDVSVQLEALDIMA 159 (1230)
T ss_dssp HH--HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHH-HHHHHHHHHHHHHSCCSCHHHHHHHHHHHH
T ss_pred HH--HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHH-HHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Confidence 11 136788888888888899999999999998543221 111 122367888888843577889999999999
Q ss_pred HhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCC-ChhhHHHHH
Q 014945 226 NFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP-SPSVLIPAL 304 (415)
Q Consensus 226 ~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~ 304 (415)
.++...+.........+++.+...+.++++.++..++.+++.++...++. ++ ..+++.++..|.+. ++.++..++
T Consensus 160 ~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~---~~-~~~l~~l~~~L~~~~~~~~r~~a~ 235 (1230)
T 1u6g_C 160 DMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI---VF-VDLIEHLLSELSKNDSMSTTRTYI 235 (1230)
T ss_dssp HHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------C-TTHHHHHHHHHHHTCSSCSCTTHH
T ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHH---HH-HHHHHHHHHHhccCCchhHHHHHH
Confidence 99975433222345778889999999999999999999999998765432 22 34677888877544 346788889
Q ss_pred HHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhcc-----
Q 014945 305 RTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN----- 379 (415)
Q Consensus 305 ~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~----- 379 (415)
.+++.++...+...... -..+++.++..+.+. ++.+|..+++++..++...++.+...+. .+++.++..+..
T Consensus 236 ~~l~~l~~~~~~~~~~~-l~~l~~~ll~~l~d~-~~~vR~~a~~~l~~l~~~~~~~~~~~l~-~li~~ll~~l~~d~~~~ 312 (1230)
T 1u6g_C 236 QCIAAISRQAGHRIGEY-LEKIIPLVVKFCNVD-DDELREYCIQAFESFVRRCPKEVYPHVS-TIINICLKYLTYDPNYN 312 (1230)
T ss_dssp HHHHHHHHHSSGGGTTS-CTTHHHHHHHHHSSC-CTTTHHHHHHHHHHHHHCTTCCCHHHHH-HHHHHHTTCCCCC----
T ss_pred HHHHHHHHHhHHHHHHH-HHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHChHHHHHhHH-HHHHHHHHHhCCCCCCC
Confidence 99999887544321111 136789999999888 8999999999999998743322222222 134444443321
Q ss_pred --------------------------------CCHHHHHHHHHHHHHHhCCCC
Q 014945 380 --------------------------------AEFEIKKEAAWAISNATSGGS 400 (415)
Q Consensus 380 --------------------------------~~~~v~~~a~~aL~nl~~~~~ 400 (415)
...++|..|+.++..++...+
T Consensus 313 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~ 365 (1230)
T 1u6g_C 313 YDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRH 365 (1230)
T ss_dssp --------------------------------CTTHHHHHHHHHHHHHHTTCC
T ss_pred CcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhch
Confidence 124679999999999987543
No 62
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.43 E-value=2.5e-10 Score=112.19 Aligned_cols=294 Identities=13% Similarity=0.159 Sum_probs=200.4
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhh
Q 014945 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 150 (415)
Q Consensus 71 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~ 150 (415)
.....+++.+.+++...+..+..++..++..+ .+.++- +++.+.+=+++++ +.++-.|+.+|+++.. ++..
T Consensus 74 ~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~----~e~~~L--~iN~l~kDl~~~n-~~ir~lALr~L~~i~~--~e~~ 144 (621)
T 2vgl_A 74 FGHMEAVNLLSSNRYTEKQIGYLFISVLVNSN----SELIRL--INNAIKNDLASRN-PTFMGLALHCIANVGS--REMA 144 (621)
T ss_dssp SCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCC----HHHHHH--HHHHHHHHHHSCC-HHHHHHHHHHHHHHCC--HHHH
T ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHHccCC----cHHHHH--HHHHHHHhcCCCC-HHHHHHHHHHhhccCC--HHHH
Confidence 35788999999999999998888888876432 122211 3678888888888 9999999999999975 4433
Q ss_pred HHHHhCCChHHHHHhh--CCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhh
Q 014945 151 RVVIDHGAVPIFVRLL--SSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC 228 (415)
Q Consensus 151 ~~~~~~g~i~~L~~ll--~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~ 228 (415)
+ .+++.+.+++ .+.++.|+..|+.++.++....|+. +...+.++.+..+| .+.++.++..|+.++..++
T Consensus 145 ~-----~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~---~~~~~~~~~l~~lL-~d~d~~V~~~a~~~l~~i~ 215 (621)
T 2vgl_A 145 E-----AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDL---VPMGDWTSRVVHLL-NDQHLGVVTAATSLITTLA 215 (621)
T ss_dssp H-----HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGG---CCCCSCHHHHHHHT-TCSCHHHHHHHHHHHHHHH
T ss_pred H-----HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhh---cCchhHHHHHHHHh-CCCCccHHHHHHHHHHHHH
Confidence 3 3578889999 8899999999999999998765542 22246889999999 7788899999999999998
Q ss_pred hCCCCCchhhhhchHHHHH----HhhcCC-------------ChhHHHHHHHHHHHhccCC-hHHHHHHH----------
Q 014945 229 RGKPQPLFEQTRPALPALE----RLIHSN-------------DDEVLTDACWALSYLSDGT-NDKIQAVI---------- 280 (415)
Q Consensus 229 ~~~~~~~~~~~~~~l~~l~----~lL~~~-------------d~~v~~~a~~~l~~l~~~~-~~~~~~~~---------- 280 (415)
...+. .....+|.++ .++... ++..+...+..+..++..+ ++....+.
T Consensus 216 ~~~~~----~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~ 291 (621)
T 2vgl_A 216 QKNPE----EFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKA 291 (621)
T ss_dssp HHCHH----HHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHH
T ss_pred HhChH----HHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhh
Confidence 76432 1122233222 222111 3455555555555555321 11111000
Q ss_pred -----------------------------------HcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCC
Q 014945 281 -----------------------------------EAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQ 325 (415)
Q Consensus 281 -----------------------------------~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~ 325 (415)
-..++..|..+|.+.++.++..++.+|..++...+. .. .+. .
T Consensus 292 ~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~-~~-~~~-~ 368 (621)
T 2vgl_A 292 QEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFS-HE-AVK-T 368 (621)
T ss_dssp HSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT-HH-HHH-T
T ss_pred ccCcccccccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc-HH-HHH-H
Confidence 012345566667777777888888888888765531 11 122 3
Q ss_pred ChHHHHHHhc-CCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhC
Q 014945 326 ALPCLLDLLT-QNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 397 (415)
Q Consensus 326 ~l~~L~~ll~-~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~ 397 (415)
..+.++..+. ++ +..+|..+..++..++. +.++.. ++..|...+...|.+++..++.+++.++.
T Consensus 369 ~~~~i~~~L~~d~-d~~Ir~~aL~lL~~l~~--~~Nv~~-----Iv~eL~~yl~~~d~~~~~~~v~~I~~la~ 433 (621)
T 2vgl_A 369 HIETVINALKTER-DVSVRQRAVDLLYAMCD--RSNAQQ-----IVAEMLSYLETADYSIREEIVLKVAILAE 433 (621)
T ss_dssp THHHHHHHHTTCC-CHHHHHHHHHHHHHHCC--HHHHHH-----HHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCC-CHhHHHHHHHHHHHHcC--hhhHHH-----HHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 5667777787 77 88888888888888873 455544 45567777777788888888888888874
No 63
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.37 E-value=9e-12 Score=132.97 Aligned_cols=318 Identities=12% Similarity=0.166 Sum_probs=217.5
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCc----hhHHHhcCchHHHHHhhcC-CCChHHHHHHHHHHHHHhCCC
Q 014945 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPP----INEVIQSGVVPRFIEFLSR-DDFPQLQFEAAWALTNIASGT 146 (415)
Q Consensus 72 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~----~~~~~~~g~i~~L~~ll~~-~~~~~i~~~a~~~L~~l~~~~ 146 (415)
.++.++..+.++++.++..|+.++..+...-..+. ...-....++|.|+..+.+ ++ +.++..|+.+|+.++...
T Consensus 87 i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~-~~~~~~al~~l~~~~~~~ 165 (1230)
T 1u6g_C 87 IVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQED-VSVQLEALDIMADMLSRQ 165 (1230)
T ss_dssp HHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSC-HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCc-hHHHHHHHHHHHHHHHHh
Confidence 35677788888888888888888888875432110 0111223478999999984 66 899999999999988532
Q ss_pred chhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHH
Q 014945 147 SENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSN 226 (415)
Q Consensus 147 ~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~ 226 (415)
+....... ..+++.++..+.++++.++..|+.+|+.++...+. .+ -...++.++..+....+...+..++.++..
T Consensus 166 ~~~l~~~~-~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~---~~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~ 240 (1230)
T 1u6g_C 166 GGLLVNFH-PSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN---IV-FVDLIEHLLSELSKNDSMSTTRTYIQCIAA 240 (1230)
T ss_dssp CSSCTTTH-HHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHH
T ss_pred HhHHHHHH-HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCH---HH-HHHHHHHHHHHhccCCchhHHHHHHHHHHH
Confidence 21111111 24577788888888999999999999999976542 12 223578888888544445677788889998
Q ss_pred hhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCC------------
Q 014945 227 FCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH------------ 294 (415)
Q Consensus 227 l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~------------ 294 (415)
++...+..-......++|.+...+.+++++++..+++++..++..........+ ..+++.++..+..
T Consensus 241 l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l-~~li~~ll~~l~~d~~~~~~~d~~~ 319 (1230)
T 1u6g_C 241 ISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHV-STIINICLKYLTYDPNYNYDDEDED 319 (1230)
T ss_dssp HHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHH-HHHHHHHTTCCCCC-----------
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhH-HHHHHHHHHHhCCCCCCCCcccccc
Confidence 887644322234578899999999988999999999999988765432211121 2244445444421
Q ss_pred -------------------------CChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHH
Q 014945 295 -------------------------PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWT 349 (415)
Q Consensus 295 -------------------------~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~ 349 (415)
..+.++..|+.+++.++...+......+ ..+++.+...+.+. ++.+|..++.+
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~d~-~~~Vr~~a~~~ 397 (1230)
T 1u6g_C 320 ENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFY-KTVSPALISRFKER-EENVKADVFHA 397 (1230)
T ss_dssp -------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHH-TTTHHHHHSTTSCS-SSHHHHHHHHH
T ss_pred cccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHH-HHHHHHHHHHcCCC-chHHHHHHHHH
Confidence 1246788999999999875543333333 36788888888888 89999999999
Q ss_pred HHHHhc--CC-----------------HHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhCCC
Q 014945 350 ISNITA--GN-----------------VNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG 399 (415)
Q Consensus 350 l~nl~~--~~-----------------~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~~ 399 (415)
+..++. +. ......++. .+++.+...+.++++.+|..++.+|+.++...
T Consensus 398 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~ 465 (1230)
T 1u6g_C 398 YLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVP-NIVKALHKQMKEKSVKTRQCCFNMLTELVNVL 465 (1230)
T ss_dssp HHHHHHHHCCC------------CCCHHHHHHHHTT-HHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhccccccccCccccccccchHHHHHHHhh-HHHHHHHHHhccCCHHHHHHHHHHHHHHHHHc
Confidence 887774 11 122223332 36777777799999999999999999998653
No 64
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=99.31 E-value=6.5e-10 Score=87.08 Aligned_cols=216 Identities=13% Similarity=0.173 Sum_probs=179.2
Q ss_pred CCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCc
Q 014945 156 HGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPL 235 (415)
Q Consensus 156 ~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~ 235 (415)
..++..++.+|+++-..++.+|+..+.+++...|+..+.. +..|+.++.++...+.......++..++...|
T Consensus 31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i~P--- 102 (253)
T 2db0_A 31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKP--- 102 (253)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCH---
T ss_pred HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHhCH---
Confidence 3568899999998888999999999999999988765553 45778888778888888888999999987654
Q ss_pred hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCCh
Q 014945 236 FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD 315 (415)
Q Consensus 236 ~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~ 315 (415)
..+.+.+|.+..-..-.|+.++.+..++|..++..+++... +++.-+..++.+++..-+..|+..++.+.....
T Consensus 103 -e~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~-----~v~rdi~smltskd~~Dkl~aLnFi~alGen~~ 176 (253)
T 2db0_A 103 -ELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMA-----SIVRDFMSMLSSKNREDKLTALNFIEAMGENSF 176 (253)
T ss_dssp -HHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTTH
T ss_pred -HHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHH-----HHHHHHHHHhcCCChHHHHHHHHHHHHHhccCc
Confidence 45678889998888889999999999999999988876543 466889999999998889999999999887766
Q ss_pred HHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHH
Q 014945 316 MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNA 395 (415)
Q Consensus 316 ~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl 395 (415)
.+.. -++|.|..+|.+. +.-||..|.-+|.+++..++..+..+ ..-+.-+++.+..+++..-.+|+.+
T Consensus 177 ~yv~-----PfLprL~aLL~D~-deiVRaSaVEtL~~lA~~npklRkii------~~kl~e~~D~S~lv~~~V~egL~rl 244 (253)
T 2db0_A 177 KYVN-----PFLPRIINLLHDG-DEIVRASAVEALVHLATLNDKLRKVV------IKRLEELNDTSSLVNKTVKEGISRL 244 (253)
T ss_dssp HHHG-----GGHHHHHGGGGCS-SHHHHHHHHHHHHHHHTSCHHHHHHH------HHHHHHCCCSCHHHHHHHHHHHHHH
T ss_pred cccC-----cchHHHHHHHcCc-chhhhHHHHHHHHHHHHcCHHHHHHH------HHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 5443 5789999999999 99999999999999999888844433 2335567888889999999999988
Q ss_pred hC
Q 014945 396 TS 397 (415)
Q Consensus 396 ~~ 397 (415)
+.
T Consensus 245 ~l 246 (253)
T 2db0_A 245 LL 246 (253)
T ss_dssp HH
T ss_pred HH
Confidence 74
No 65
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=99.26 E-value=2.4e-10 Score=113.79 Aligned_cols=213 Identities=16% Similarity=0.121 Sum_probs=155.8
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHH-HhhCCCCHHHHHHHHHHHHHhcCC-CchhHHH
Q 014945 117 PRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFV-RLLSSPTDDVREQAVWALGNVAGD-SPKCRDL 194 (415)
Q Consensus 117 ~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~-~ll~~~~~~v~~~a~~~L~nl~~~-~~~~~~~ 194 (415)
..+++.|++++ +..|..|+++|++|+. +++.+..+...|++..++ .+|.+++.+++..|+++|.||+.+ .+...+.
T Consensus 37 ~Pll~~L~S~~-~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~ 114 (684)
T 4gmo_A 37 LPVLKDLKSPD-AKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVH 114 (684)
T ss_dssp HHHHHHHSSSC-CSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHcCCCC-HHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHH
Confidence 34567789988 9999999999999998 488888888888887765 578889999999999999999964 4667788
Q ss_pred HHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChH
Q 014945 195 VLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTND 274 (415)
Q Consensus 195 ~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~ 274 (415)
++..|++++|..++.+ .. ..+........... ......+ .++...++++|.+|+..+++
T Consensus 115 l~~~~il~~L~~~l~~-~~--------~~~~~~~~~~~~~~-~~~~~~~-----------~~~~~~~l~lL~~L~e~s~~ 173 (684)
T 4gmo_A 115 LYRLDVLTAIEHAAKA-VL--------ETLTTSEPPFSKLL-KAQQRLV-----------WDITGSLLVLIGLLALARDE 173 (684)
T ss_dssp HHHTTHHHHHHHHHHH-HH--------HHHHCBTTBGGGSC-HHHHHHH-----------HHHHHHHHHHHHHHHHHCHH
T ss_pred HHHcChHHHHHHHHHh-hH--------HHHhhhcccccccc-HHHHHHH-----------HHHHHHHHHHHHHHHhCCHH
Confidence 9999999999999832 11 12222211110000 0001111 12445677788888888887
Q ss_pred HHHHHHHcCcHHHHHHhcCC---CChhhHHHHHHHHHHhhcCChHHHHHHHHCCChH---HHHHHhcCCCccchHHHHHH
Q 014945 275 KIQAVIEAGVCPRLVELLRH---PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALP---CLLDLLTQNYKKSIKKEACW 348 (415)
Q Consensus 275 ~~~~~~~~~~i~~L~~lL~~---~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~---~L~~ll~~~~~~~v~~~a~~ 348 (415)
....+...+.++.|+..|.+ ....++..|+.+|..++..++...+.+.+.+... .+..+.. . +...+..+|+
T Consensus 174 ~~~~v~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~-~-~~~~~~la~g 251 (684)
T 4gmo_A 174 IHEAVATKQTILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLAT-G-TDPRAVMACG 251 (684)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHH-S-SCTTHHHHHH
T ss_pred HHHHHHhcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhc-C-CcHHHHHHHH
Confidence 77778888999999999843 2457999999999999999998888888876543 3333333 3 4556888999
Q ss_pred HHHHHh
Q 014945 349 TISNIT 354 (415)
Q Consensus 349 ~l~nl~ 354 (415)
++.|+.
T Consensus 252 iL~Ni~ 257 (684)
T 4gmo_A 252 VLHNVF 257 (684)
T ss_dssp HHHHHH
T ss_pred HHHhHh
Confidence 999985
No 66
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=99.24 E-value=8.4e-10 Score=110.02 Aligned_cols=273 Identities=14% Similarity=0.139 Sum_probs=192.8
Q ss_pred cHHHHHHhhc---CCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCC-------ChHHHHHHHHHHHH
Q 014945 72 SLPAMVAGVW---SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDD-------FPQLQFEAAWALTN 141 (415)
Q Consensus 72 ~i~~l~~~l~---~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~-------~~~i~~~a~~~L~~ 141 (415)
++..+-..|. ++++.++.-|+..|..+-.+.. .. ++..|...|.+++ .+.++..|+..|+.
T Consensus 393 gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~----~~-----~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 393 GKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG----RD-----TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT----HH-----HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc----HH-----HHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 3444555555 5667777788888877754431 11 3566777776543 26789999999999
Q ss_pred HhCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHH
Q 014945 142 IASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNAT 221 (415)
Q Consensus 142 l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~ 221 (415)
+..++... .+++.|..++.+++..+++.|..+||.+..+.... + ++..|+..+..+.+..+++.++
T Consensus 464 a~~GS~~e-------ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~-~------ai~~LL~~~~e~~~e~vrR~aa 529 (963)
T 4ady_A 464 AAMGSANI-------EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKP-E------AIHDMFTYSQETQHGNITRGLA 529 (963)
T ss_dssp HSTTCCCH-------HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCH-H------HHHHHHHHHHHCSCHHHHHHHH
T ss_pred HhcCCCCH-------HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCH-H------HHHHHHHHHhccCcHHHHHHHH
Confidence 87664321 24667888887777778889999999875443311 1 3456777665566778999999
Q ss_pred HHHHHhhhCCCCCchhhhhchHHHHHHhhc-CCChhHHHHHHHHHHHhc--cCChHHHHHHHHcCcHHHHHHhc-CCCCh
Q 014945 222 WTLSNFCRGKPQPLFEQTRPALPALERLIH-SNDDEVLTDACWALSYLS--DGTNDKIQAVIEAGVCPRLVELL-RHPSP 297 (415)
Q Consensus 222 ~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~-~~d~~v~~~a~~~l~~l~--~~~~~~~~~~~~~~~i~~L~~lL-~~~~~ 297 (415)
.+|..+..+. ...++.++..|. +.++.++..++.+++.-. .++... ++.|+..+ .+.+.
T Consensus 530 lgLGll~~g~--------~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~a---------Iq~LL~~~~~d~~d 592 (963)
T 4ady_A 530 VGLALINYGR--------QELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSA---------VKRLLHVAVSDSND 592 (963)
T ss_dssp HHHHHHTTTC--------GGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHH---------HHHHHHHHHHCSCH
T ss_pred HHHHhhhCCC--------hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHH---------HHHHHHHhccCCcH
Confidence 9999887653 245566666665 568889988888776443 444333 34444444 45678
Q ss_pred hhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHh
Q 014945 298 SVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLL 377 (415)
Q Consensus 298 ~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l 377 (415)
.++..|+.+||.+..+.+ ..++.++.++.+..++.+|..|+++++.++.+++.. .++..|..+.
T Consensus 593 ~VRraAViaLGlI~~g~~---------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~-------~aid~L~~L~ 656 (963)
T 4ady_A 593 DVRRAAVIALGFVLLRDY---------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ-------SAIDVLDPLT 656 (963)
T ss_dssp HHHHHHHHHHHHHTSSSC---------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH-------HHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccCCH---------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH-------HHHHHHHHHc
Confidence 899999999999988775 245667765554449999999999999999875531 1566788888
Q ss_pred ccCCHHHHHHHHHHHHHHhCCCC
Q 014945 378 LNAEFEIKKEAAWAISNATSGGS 400 (415)
Q Consensus 378 ~~~~~~v~~~a~~aL~nl~~~~~ 400 (415)
++.+..|+..|+.+|+.+..+.+
T Consensus 657 ~D~d~~Vrq~Ai~ALG~Ig~gtn 679 (963)
T 4ady_A 657 KDPVDFVRQAAMIALSMILIQQT 679 (963)
T ss_dssp TCSSHHHHHHHHHHHHHHSTTCC
T ss_pred cCCCHHHHHHHHHHHHHHhcCCc
Confidence 99999999999999999987644
No 67
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.14 E-value=2.4e-09 Score=105.28 Aligned_cols=258 Identities=14% Similarity=0.128 Sum_probs=174.0
Q ss_pred HHHHHhh--cCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhH
Q 014945 74 PAMVAGV--WSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 151 (415)
Q Consensus 74 ~~l~~~l--~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~ 151 (415)
+.+.+.+ .+.++-++..|+.++.++.... ++ .+...++++.+.++|.+.+ +.++..|+.++..++..+++...
T Consensus 149 ~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~-p~---~~~~~~~~~~l~~lL~d~d-~~V~~~a~~~l~~i~~~~~~~~~ 223 (621)
T 2vgl_A 149 GEIPKILVAGDTMDSVKQSAALCLLRLYRTS-PD---LVPMGDWTSRVVHLLNDQH-LGVVTAATSLITTLAQKNPEEFK 223 (621)
T ss_dssp THHHHHHHCSSSCHHHHHHHHHHHHHHHHHC-GG---GCCCCSCHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHCHHHHT
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHHhC-hh---hcCchhHHHHHHHHhCCCC-ccHHHHHHHHHHHHHHhChHHHH
Confidence 4455566 5566677777777776665432 11 1112478999999998888 99999999999999986554211
Q ss_pred HHHhCCChHHHHHhhCC-------------CCHHHHHHHHHHHHHhcCC-CchhHHHHHhcCChHHHHHHhc--------
Q 014945 152 VVIDHGAVPIFVRLLSS-------------PTDDVREQAVWALGNVAGD-SPKCRDLVLSNGALMPLLAQFN-------- 209 (415)
Q Consensus 152 ~~~~~g~i~~L~~ll~~-------------~~~~v~~~a~~~L~nl~~~-~~~~~~~~~~~g~i~~L~~~l~-------- 209 (415)
.++. ..+..|.+++.. +++-.+...+..|+.++.. ++..++.+.+ .+..++..+.
T Consensus 224 ~~~~-~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~~ks~~l 300 (621)
T 2vgl_A 224 TSVS-LAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEPPKSKKV 300 (621)
T ss_dssp THHH-HHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSCCSCSSH
T ss_pred HHHH-HHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccCcccccc
Confidence 1111 123333334322 1677899999999999863 4454444443 3444443321
Q ss_pred cchh--HhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHH
Q 014945 210 EHAK--LSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPR 287 (415)
Q Consensus 210 ~~~~--~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~ 287 (415)
++.+ ..+...++.++..+.. .......++..|..+|.++++.++.-++.++..++...+.. . ++ ......
T Consensus 301 ~~~n~~~aVl~ea~~~i~~l~~-----~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~-~-~~-~~~~~~ 372 (621)
T 2vgl_A 301 QHSNAKNAVLFEAISLIIHHDS-----EPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFSH-E-AV-KTHIET 372 (621)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTH-H-HH-HTTHHH
T ss_pred cccchHHHHHHHHHHHHHhcCC-----cHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcH-H-HH-HHHHHH
Confidence 1223 3788888888888751 23344567888999999899999999999999998765421 1 22 245678
Q ss_pred HHHhcC-CCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhc
Q 014945 288 LVELLR-HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 355 (415)
Q Consensus 288 L~~lL~-~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~ 355 (415)
++..|. +++..++..++.++..++. +..... ++..|...+.+. +...+..++..++.++.
T Consensus 373 i~~~L~~d~d~~Ir~~aL~lL~~l~~--~~Nv~~-----Iv~eL~~yl~~~-d~~~~~~~v~~I~~la~ 433 (621)
T 2vgl_A 373 VINALKTERDVSVRQRAVDLLYAMCD--RSNAQQ-----IVAEMLSYLETA-DYSIREEIVLKVAILAE 433 (621)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHHCC--HHHHHH-----HHHHHHHHHHHC-CHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCCCHhHHHHHHHHHHHHcC--hhhHHH-----HHHHHHHHHHhc-CHHHHHHHHHHHHHHHH
Confidence 888888 8899999999999999985 334443 455677777777 88888888888887764
No 68
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=99.13 E-value=7.7e-09 Score=93.01 Aligned_cols=276 Identities=14% Similarity=0.072 Sum_probs=166.7
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhH
Q 014945 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 151 (415)
Q Consensus 72 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~ 151 (415)
.+..+++.+.++|...+....-.+..+.... .+ ++ =+++.|.+=+++++ +-++-.|+++|++|.. ++..+
T Consensus 69 lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~-~e----~i--Lv~Nsl~kDl~~~N-~~iR~lALRtL~~I~~--~~m~~ 138 (355)
T 3tjz_B 69 AFFAMTKLFQSNDPTLRRMCYLTIKEMSCIA-ED----VI--IVTSSLTKDMTGKE-DSYRGPAVRALCQITD--STMLQ 138 (355)
T ss_dssp HHHHHHGGGGCCCHHHHHHHHHHHHHHTTTS-SC----GG--GGHHHHHHHHHSSC-HHHHHHHHHHHHHHCC--TTTHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhCCCH-HH----HH--HHHHHHHhhcCCCc-HhHHHHHHHHHhcCCC--HHHHH
Confidence 3567788999999999999888888875431 22 22 15788999999998 9999999999999987 44433
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCC
Q 014945 152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK 231 (415)
Q Consensus 152 ~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~ 231 (415)
. +.+.+.+.|.+.++.|+..|+.+..++....|+. + .+++..+-.++ .+.++.++.+|+.++..++..+
T Consensus 139 ~-----l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~---v--~~~~~~l~~ll-~d~n~~V~~~Al~lL~ei~~~d 207 (355)
T 3tjz_B 139 A-----IERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDV---V--KRWVNEAQEAA-SSDNIMVQYHALGLLYHVRKND 207 (355)
T ss_dssp H-----HHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHH---H--HTTHHHHHHHT-TCSSHHHHHHHHHHHHHHHTTC
T ss_pred H-----HHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHH---H--HHHHHHHHHHh-cCCCccHHHHHHHHHHHHHhhc
Confidence 3 4567888899999999999999999999888753 2 25888888888 7788889999999999998753
Q ss_pred CCCchhhhhchHHHHHHhhcCC---ChhHHHHHHHHHHHhccCC-hHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHH
Q 014945 232 PQPLFEQTRPALPALERLIHSN---DDEVLTDACWALSYLSDGT-NDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV 307 (415)
Q Consensus 232 ~~~~~~~~~~~l~~l~~lL~~~---d~~v~~~a~~~l~~l~~~~-~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l 307 (415)
...+..++..+... ++-.+...++.+..++..+ +. ....+++.+..+|++.++.|.-.|++++
T Consensus 208 --------~~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~-----~~~~~~~~l~~~L~~~~~aVvyEa~k~I 274 (355)
T 3tjz_B 208 --------RLAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS-----RDSPLFDFIESCLRNKHEMVVYEAASAI 274 (355)
T ss_dssp --------HHHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC----------------------CCCCCSSHHHHHHHHHHH
T ss_pred --------hHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh-----hHHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence 11333444444332 4666666677766666544 22 1245778899999999999999999999
Q ss_pred HHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHH
Q 014945 308 GNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKE 387 (415)
Q Consensus 308 ~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~ 387 (415)
-.+...... .. ..++..+..++.++ ++.+|-.|...|..+....|..++. .-..+.+++.++|..+..-
T Consensus 275 ~~l~~~~~~----~~-~~a~~~L~~fLss~-d~niryvaLr~L~~l~~~~P~~v~~-----~n~~ie~li~d~n~sI~t~ 343 (355)
T 3tjz_B 275 VNLPGCSAK----EL-APAVSVLQLFCSSP-KAALRYAAVRTLNKVAMKHPSAVTA-----CNLDLENLVTDANRSIATL 343 (355)
T ss_dssp TC----------------CCCTHHHHHHSS-SSSSHHHHHHCC-------------------------------------
T ss_pred HhccCCCHH----HH-HHHHHHHHHHHcCC-CchHHHHHHHHHHHHHHHCcHHHHH-----HHHHHHHHccCCcHhHHHH
Confidence 887552221 11 24567788888888 9999999999999999877765543 2345667788888777665
Q ss_pred HHHHH
Q 014945 388 AAWAI 392 (415)
Q Consensus 388 a~~aL 392 (415)
|+..|
T Consensus 344 Aittl 348 (355)
T 3tjz_B 344 AITTL 348 (355)
T ss_dssp -----
T ss_pred HHHHh
Confidence 55544
No 69
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=99.09 E-value=5.9e-10 Score=110.97 Aligned_cols=195 Identities=14% Similarity=0.102 Sum_probs=150.4
Q ss_pred ChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHH-HHHhhcCCChhHHHHHHHHHHHhccC-ChHHHH
Q 014945 200 ALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPA-LERLIHSNDDEVLTDACWALSYLSDG-TNDKIQ 277 (415)
Q Consensus 200 ~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~-l~~lL~~~d~~v~~~a~~~l~~l~~~-~~~~~~ 277 (415)
.+.++++.| ++.++..+..|+++|++|+.+..........++++. +..+|.+++.+|+..|+++|.||+.. ..+...
T Consensus 35 ~i~Pll~~L-~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~ 113 (684)
T 4gmo_A 35 KILPVLKDL-KSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCV 113 (684)
T ss_dssp TTHHHHHHH-SSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred hHHHHHHHc-CCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHH
Confidence 566788888 788999999999999999975433334444566654 56788999999999999999999854 456667
Q ss_pred HHHHcCcHHHHHHhcCCCC---------------------hhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcC
Q 014945 278 AVIEAGVCPRLVELLRHPS---------------------PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQ 336 (415)
Q Consensus 278 ~~~~~~~i~~L~~lL~~~~---------------------~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~ 336 (415)
.+++.|+++.|..+|.... +.+...++.+|.+++.+++.....+...+.++.++..|.+
T Consensus 114 ~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~ 193 (684)
T 4gmo_A 114 HLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLIS 193 (684)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHh
Confidence 7899999999999874210 1245568889999999888888888888999999998854
Q ss_pred C--CccchHHHHHHHHHHHhcCCHHHHHHHHHcCCH---HHHHHHhccCCHHHHHHHHHHHHHHh
Q 014945 337 N--YKKSIKKEACWTISNITAGNVNQIQAIIEAGII---GPLVNLLLNAEFEIKKEAAWAISNAT 396 (415)
Q Consensus 337 ~--~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i---~~L~~~l~~~~~~v~~~a~~aL~nl~ 396 (415)
. ....++..|+.+|.+++.++++.++.+.+.+.. ..+..+.+ .+...+..+++.|.|+.
T Consensus 194 ~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~-~~~~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 194 ADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLAT-GTDPRAVMACGVLHNVF 257 (684)
T ss_dssp HCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHH-SSCTTHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhc-CCcHHHHHHHHHHHhHh
Confidence 3 134799999999999999999999988887653 33333333 44445778889999875
No 70
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.00 E-value=4.4e-09 Score=90.93 Aligned_cols=192 Identities=14% Similarity=0.225 Sum_probs=146.5
Q ss_pred HHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhc-CCChhHHHHHHHHHHHhccCChHHHHHHH
Q 014945 202 MPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH-SNDDEVLTDACWALSYLSDGTNDKIQAVI 280 (415)
Q Consensus 202 ~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~-~~d~~v~~~a~~~l~~l~~~~~~~~~~~~ 280 (415)
+.+...+ .+.+...+..++..|..++...+.........+++.+...+. +.+..++..++.+++.++..-.......+
T Consensus 18 ~~l~~~l-~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~ 96 (242)
T 2qk2_A 18 KDFYDKL-EEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA 96 (242)
T ss_dssp TTHHHHH-TCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred HHHHhhh-ccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 3466677 678899999999999999886322111223577888999995 89999999999999999854332222222
Q ss_pred HcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcC-CHH
Q 014945 281 EAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-NVN 359 (415)
Q Consensus 281 ~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~-~~~ 359 (415)
..+++.++..+.+.+..++..+..++.+++.... .. .+++.+...+++. ++.+|..++..|+.+... .++
T Consensus 97 -~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~--~~-----~ll~~l~~~l~~~-~~~vr~~~l~~l~~~l~~~~~~ 167 (242)
T 2qk2_A 97 -SACVPSLLEKFKEKKPNVVTALREAIDAIYASTS--LE-----AQQESIVESLSNK-NPSVKSETALFIARALTRTQPT 167 (242)
T ss_dssp -HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC--HH-----HHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCCGG
T ss_pred -HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC--HH-----HHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHcCCC
Confidence 3478999999999999999999999999987543 11 3578899999998 999999999999997653 333
Q ss_pred H-HHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCHHHH
Q 014945 360 Q-IQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQI 404 (415)
Q Consensus 360 ~-~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~ 404 (415)
. ....+. .++|.|+.++.+.++++|..|..+++.++..-..+.+
T Consensus 168 ~~~~~~l~-~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~ 212 (242)
T 2qk2_A 168 ALNKKLLK-LLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAV 212 (242)
T ss_dssp GCCHHHHH-HHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred CccHHHHH-HHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHH
Confidence 1 122333 3899999999999999999999999999865555434
No 71
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.99 E-value=1.3e-07 Score=94.51 Aligned_cols=273 Identities=16% Similarity=0.130 Sum_probs=189.8
Q ss_pred HHHHHHhhcCCC--------HHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhC
Q 014945 73 LPAMVAGVWSDD--------RNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIAS 144 (415)
Q Consensus 73 i~~l~~~l~~~~--------~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~ 144 (415)
+..|...|.+++ +.++..|+..|.....+..++ .+++.|...+.+++ ..++..|+.+|+.+..
T Consensus 431 ~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~e--------ev~e~L~~~L~dd~-~~~~~~AalALGli~v 501 (963)
T 4ady_A 431 TDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANI--------EVYEALKEVLYNDS-ATSGEAAALGMGLCML 501 (963)
T ss_dssp HHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCH--------HHHHHHHHHHHTCC-HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCH--------HHHHHHHHHHhcCC-HHHHHHHHHHHhhhhc
Confidence 455566665444 556667777777654433111 24677888888777 6777889999998755
Q ss_pred CCchhhHHHHhCCChHHHHHhh-CCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHH
Q 014945 145 GTSENTRVVIDHGAVPIFVRLL-SSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWT 223 (415)
Q Consensus 145 ~~~~~~~~~~~~g~i~~L~~ll-~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~ 223 (415)
++... .++..|+..+ ...+..++..++.+|+.+....+. .++.++..|..+.++.++..++.+
T Consensus 502 GTgn~-------~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e---------~~~~li~~L~~~~dp~vRygaa~a 565 (963)
T 4ady_A 502 GTGKP-------EAIHDMFTYSQETQHGNITRGLAVGLALINYGRQE---------LADDLITKMLASDESLLRYGGAFT 565 (963)
T ss_dssp TCCCH-------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGG---------GGHHHHHHHHHCSCHHHHHHHHHH
T ss_pred ccCCH-------HHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChH---------HHHHHHHHHHhCCCHHHHHHHHHH
Confidence 43322 1244555543 456788999999999999877664 567788888667788888888888
Q ss_pred HHHhhhCCCCCchhhhhchHHHHHHhh-cCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhc-CCCChhhHH
Q 014945 224 LSNFCRGKPQPLFEQTRPALPALERLI-HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-RHPSPSVLI 301 (415)
Q Consensus 224 l~~l~~~~~~~~~~~~~~~l~~l~~lL-~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL-~~~~~~v~~ 301 (415)
++--+.+... ...+..|++.+ .+.+..++..|+.+|+.+..+.++ .++.++.+| .+.++.+|.
T Consensus 566 lglAyaGTGn------~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e---------~v~rlv~~L~~~~d~~VR~ 630 (963)
T 4ady_A 566 IALAYAGTGN------NSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYT---------TVPRIVQLLSKSHNAHVRC 630 (963)
T ss_dssp HHHHTTTSCC------HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCS---------SHHHHTTTGGGCSCHHHHH
T ss_pred HHHHhcCCCC------HHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHH---------HHHHHHHHHHhcCCHHHHH
Confidence 7755544211 23344444433 456788999999999998766542 356677655 577899999
Q ss_pred HHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHH----HHHHHHcCCHHHHHHHh
Q 014945 302 PALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQ----IQAIIEAGIIGPLVNLL 377 (415)
Q Consensus 302 ~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~----~~~l~~~~~i~~L~~~l 377 (415)
.+..+||.++.+++.. .+++.|..+..++ +..||..|+.+|+.+..++.+. +.. +...|.+..
T Consensus 631 gAalALGli~aGn~~~-------~aid~L~~L~~D~-d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~-----~l~~L~~~~ 697 (963)
T 4ady_A 631 GTAFALGIACAGKGLQ-------SAIDVLDPLTKDP-VDFVRQAAMIALSMILIQQTEKLNPQVAD-----INKNFLSVI 697 (963)
T ss_dssp HHHHHHHHHTSSSCCH-------HHHHHHHHHHTCS-SHHHHHHHHHHHHHHSTTCCTTTCTTHHH-----HHHHHHHHH
T ss_pred HHHHHHHHhccCCCcH-------HHHHHHHHHccCC-CHHHHHHHHHHHHHHhcCCccccchHHHH-----HHHHHHHHH
Confidence 9999999999887632 2466788888888 9999999999999999864432 333 344566666
Q ss_pred cc--CCHHHHHHHHHHHHHHhCC
Q 014945 378 LN--AEFEIKKEAAWAISNATSG 398 (415)
Q Consensus 378 ~~--~~~~v~~~a~~aL~nl~~~ 398 (415)
.+ .|+..+--|..|.+-+-.+
T Consensus 698 ~dk~~d~~~~fga~iAqGll~aG 720 (963)
T 4ady_A 698 TNKHQEGLAKFGACVAQGIMNAG 720 (963)
T ss_dssp HCSSSCHHHHHHHHHHHHHHTTG
T ss_pred hcccccHHHHHHHHHHHHHHhcC
Confidence 54 5678888888888877544
No 72
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.94 E-value=5.9e-07 Score=70.59 Aligned_cols=216 Identities=17% Similarity=0.196 Sum_probs=165.2
Q ss_pred hcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhcCCCch
Q 014945 112 QSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLS-SPTDDVREQAVWALGNVAGDSPK 190 (415)
Q Consensus 112 ~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~v~~~a~~~L~nl~~~~~~ 190 (415)
+..++..++.+|+++- ..++..|+.++..++...++....+ +..|+.+++ ++...+......++|.++...|+
T Consensus 30 d~~~l~~lI~~LDDDl-wtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe 103 (253)
T 2db0_A 30 DESVLKKLIELLDDDL-WTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPE 103 (253)
T ss_dssp CHHHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHH
T ss_pred hHHHHHHHHHHhccHH-HHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHhCHH
Confidence 5567899999999887 8999999999999999877766554 445666654 45666777888999999988776
Q ss_pred hHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhcc
Q 014945 191 CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSD 270 (415)
Q Consensus 191 ~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~ 270 (415)
..+. .++.+..-+ .-.++.++.+..++|..+.+..| ....+++.-+..++.++|..=+..++..++-+..
T Consensus 104 ~v~~-----vVp~lfany-rigd~kikIn~~yaLeeIaranP----~l~~~v~rdi~smltskd~~Dkl~aLnFi~alGe 173 (253)
T 2db0_A 104 LVKS-----MIPVLFANY-RIGDEKTKINVSYALEEIAKANP----MLMASIVRDFMSMLSSKNREDKLTALNFIEAMGE 173 (253)
T ss_dssp HHHH-----HHHHHHHHS-CCCSHHHHHHHHHHHHHHHHHCH----HHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCT
T ss_pred HHHh-----hHHHHHHHH-hcCCccceecHHHHHHHHHHhCh----HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhc
Confidence 4222 345555555 44589999999999999998754 3345667778889998887777777777777766
Q ss_pred CChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHH
Q 014945 271 GTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTI 350 (415)
Q Consensus 271 ~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l 350 (415)
+..... ..++|+|..+|.+.+.-|+..|..+|++++.-++..+.. +..-+.-+++. +..+.+..--.|
T Consensus 174 n~~~yv-----~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRki------i~~kl~e~~D~-S~lv~~~V~egL 241 (253)
T 2db0_A 174 NSFKYV-----NPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKV------VIKRLEELNDT-SSLVNKTVKEGI 241 (253)
T ss_dssp TTHHHH-----GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHH------HHHHHHHCCCS-CHHHHHHHHHHH
T ss_pred cCcccc-----CcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHH------HHHHHHHhcCc-HHHHHHHHHHHH
Confidence 655432 357899999999999999999999999999999875543 23355666777 778888888888
Q ss_pred HHHhc
Q 014945 351 SNITA 355 (415)
Q Consensus 351 ~nl~~ 355 (415)
+.++.
T Consensus 242 ~rl~l 246 (253)
T 2db0_A 242 SRLLL 246 (253)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87764
No 73
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.90 E-value=4.6e-08 Score=80.18 Aligned_cols=188 Identities=18% Similarity=0.188 Sum_probs=149.6
Q ss_pred CchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHH
Q 014945 114 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRD 193 (415)
Q Consensus 114 g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~ 193 (415)
+.+..|..+|.+.| +.++..|+.+|..+...-+.......-...++.++.++.+.|+.+.-.|+.||..|..+.|-..+
T Consensus 33 ~~l~~L~~LL~dkD-~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~ 111 (265)
T 3b2a_A 33 RALFLILELAGEDD-ETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK 111 (265)
T ss_dssp HHHHHHHHHTTSSC-HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred hHHHHHHHHHhccc-hHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence 35788999998888 99999999999999886444443333346799999999999999999999999999988765444
Q ss_pred HHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCCh
Q 014945 194 LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTN 273 (415)
Q Consensus 194 ~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~ 273 (415)
.+.. ....|...+ ..++.-+..+++..+..+-- ......++..+..++.+.|..++..++.++.+++....
T Consensus 112 ~y~K--l~~aL~dli-k~~~~il~~eaae~Lgklkv------~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~ 182 (265)
T 3b2a_A 112 TFLK--AAKTLVSLL-ESPDDMMRIETIDVLSKLQP------LEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSA 182 (265)
T ss_dssp HHHH--HHHHHHHHT-TSCCHHHHHHHHHHHHHCCB------SCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCS
T ss_pred HHHH--HHHHHHHHh-cCCCchHHHHHHHHhCcCCc------ccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccC
Confidence 4443 677888888 58888899999999998821 12235667788888999999999999999999986543
Q ss_pred HHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCC
Q 014945 274 DKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGD 314 (415)
Q Consensus 274 ~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~ 314 (415)
+. -+-.+++.-+-.+|++.++.++..|+.++-.+.+.+
T Consensus 183 D~---~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~p 220 (265)
T 3b2a_A 183 DS---GHLTLILDEIPSLLQNDNEFIVELALDVLEKALSFP 220 (265)
T ss_dssp SC---CCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSC
T ss_pred CH---HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCc
Confidence 21 011357788899999999999999999999998763
No 74
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.89 E-value=2.8e-08 Score=85.79 Aligned_cols=185 Identities=12% Similarity=0.106 Sum_probs=140.6
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhc-CCCChHHHHHHHHHHHHHhCCCchhhHH
Q 014945 74 PAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLS-RDDFPQLQFEAAWALTNIASGTSENTRV 152 (415)
Q Consensus 74 ~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~~i~~~a~~~L~~l~~~~~~~~~~ 152 (415)
+.+.+.+.+.++..+..|+..|..++... ....... -..+++.|...+. +.+ ..++..|+.+++.++..-......
T Consensus 18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~-~~~~~~~-~~~i~~~L~~~l~kd~~-~~V~~~a~~~l~~la~~l~~~~~~ 94 (242)
T 2qk2_A 18 KDFYDKLEEKKWTLRKESLEVLEKLLTDH-PKLENGE-YGALVSALKKVITKDSN-VVLVAMAGKCLALLAKGLAKRFSN 94 (242)
T ss_dssp TTHHHHHTCSSHHHHHHHHHHHHHHHHHC-SSBCCCC-CHHHHHHHHHHHHHCSC-HHHHHHHHHHHHHHHHHHGGGGHH
T ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHccC-CCCCCCC-HHHHHHHHHHHhccCCC-HHHHHHHHHHHHHHHHHHhhhHHH
Confidence 35788889999999999999999998762 1111111 1246788888995 877 999999999999999632221122
Q ss_pred HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCC-
Q 014945 153 VIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK- 231 (415)
Q Consensus 153 ~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~- 231 (415)
.+ ..++|.++..+.+.+..+++.+..+|..++...+ . + ..++.+...+ ++.++.++..++..+..+....
T Consensus 95 ~~-~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~-~-~-----~ll~~l~~~l-~~~~~~vr~~~l~~l~~~l~~~~ 165 (242)
T 2qk2_A 95 YA-SACVPSLLEKFKEKKPNVVTALREAIDAIYASTS-L-E-----AQQESIVESL-SNKNPSVKSETALFIARALTRTQ 165 (242)
T ss_dssp HH-HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC-H-H-----HHHHHHHHHT-TCSCHHHHHHHHHHHHHHHTTCC
T ss_pred HH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC-H-H-----HHHHHHHHHH-cCCChHHHHHHHHHHHHHHHHcC
Confidence 22 2478999999999999999999999999987543 1 1 1467788888 6678899999999999966553
Q ss_pred CC-CchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhcc
Q 014945 232 PQ-PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSD 270 (415)
Q Consensus 232 ~~-~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~ 270 (415)
+. ........++|.+..++.+.+++++..|..+++.++.
T Consensus 166 ~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 166 PTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp GGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 32 2344557899999999999999999999999998873
No 75
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.86 E-value=1.7e-07 Score=76.95 Aligned_cols=188 Identities=15% Similarity=0.131 Sum_probs=150.8
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhh
Q 014945 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 150 (415)
Q Consensus 71 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~ 150 (415)
+.+..++++|+..|+.++..++.++..+++.. +.......-..+++.++.++.+.+ ..+...|++||..+..+.|-..
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~-~~~l~~~~~e~~Ld~iI~llk~~d-Ekval~A~r~L~~LLe~vpL~~ 110 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRA-DSDLRMMVLERHLDVFINALSQEN-EKVTIKALRALGYLVKDVPMGS 110 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTCCSTT-HHHHHHHHHHHHHHHTTCCBCH
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhc-cccccHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHcCCCCCH
Confidence 35778999999999999999999999998764 233344444457999999999988 9999999999999999877666
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhC
Q 014945 151 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 230 (415)
Q Consensus 151 ~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~ 230 (415)
..+.. ++.++..++.++++-+++.++..++.+-.-++. . +++..+..++ .+.+..++..++.++.+++..
T Consensus 111 ~~y~K--l~~aL~dlik~~~~il~~eaae~Lgklkv~~~~--~-----~V~~~l~sLl-~Skd~~vK~agl~~L~eia~~ 180 (265)
T 3b2a_A 111 KTFLK--AAKTLVSLLESPDDMMRIETIDVLSKLQPLEDS--K-----LVRTYINELV-VSPDLYTKVAGFCLFLNMLNS 180 (265)
T ss_dssp HHHHH--HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCC--H-----HHHHHHHHHH-TCSSHHHHHHHHHHHHHHGGG
T ss_pred HHHHH--HHHHHHHHhcCCCchHHHHHHHHhCcCCcccch--H-----HHHHHHHHHH-hCCChhHHHHHHHHHHHhhcc
Confidence 66664 577899999999999999999999999322221 1 1456778888 899999999999999999986
Q ss_pred CCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCC
Q 014945 231 KPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGT 272 (415)
Q Consensus 231 ~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~ 272 (415)
. .+......++.-+-.+|++.|+.++.-|+.++-.+...+
T Consensus 181 S--~D~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~p 220 (265)
T 3b2a_A 181 S--ADSGHLTLILDEIPSLLQNDNEFIVELALDVLEKALSFP 220 (265)
T ss_dssp C--SSCCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSC
T ss_pred c--CCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCc
Confidence 4 222334566667778889999999999999999887653
No 76
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.83 E-value=4e-10 Score=87.41 Aligned_cols=121 Identities=18% Similarity=0.167 Sum_probs=93.6
Q ss_pred hchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHH
Q 014945 240 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQ 319 (415)
Q Consensus 240 ~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~ 319 (415)
.+.++.+..+|+++++.++..++++|+.+... .++.|+..|.++++.++..|+++|+++.. +
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~------------~~~~L~~~L~d~~~~vR~~A~~aL~~~~~--~---- 72 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGDE------------AFEPLLESLSNEDWRIRGAAAWIIGNFQD--E---- 72 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSST------------THHHHHHGGGCSCHHHHHHHHHHHGGGCS--H----
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCch------------HHHHHHHHHcCCCHHHHHHHHHHHHhcCC--H----
Confidence 45678899999999999999999999876431 25888999999999999999999999863 1
Q ss_pred HHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHH
Q 014945 320 CIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNA 395 (415)
Q Consensus 320 ~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl 395 (415)
..++.|..++.++ ++.||..|+|+|+++.. ++ .++.|+.++.++++.|+..|+++|.++
T Consensus 73 -----~a~~~L~~~L~d~-~~~VR~~A~~aL~~~~~--~~---------a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 73 -----RAVEPLIKLLEDD-SGFVRSGAARSLEQIGG--ER---------VRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp -----HHHHHHHHHHHHC-CTHHHHHHHHHHHHHCS--HH---------HHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred -----HHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc--HH---------HHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 2478899999888 99999999999999862 22 477888899999999999999998753
No 77
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.80 E-value=4e-08 Score=84.89 Aligned_cols=191 Identities=13% Similarity=0.185 Sum_probs=140.6
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHH-HhCCCchhhHHHHh-CCChHHHHHhh-CCCCHHHHHHHHHHHHHhcCCC--chhH
Q 014945 118 RFIEFLSRDDFPQLQFEAAWALTN-IASGTSENTRVVID-HGAVPIFVRLL-SSPTDDVREQAVWALGNVAGDS--PKCR 192 (415)
Q Consensus 118 ~L~~ll~~~~~~~i~~~a~~~L~~-l~~~~~~~~~~~~~-~g~i~~L~~ll-~~~~~~v~~~a~~~L~nl~~~~--~~~~ 192 (415)
.+.+.+.+.+ ..-|..|+..|.. ++.++++....-.+ ..++..|...+ .+.+..++..|+.+|+.|+.+- +.+.
T Consensus 20 ~f~~~l~s~~-w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~ 98 (249)
T 2qk1_A 20 DFQERITSSK-WKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFS 98 (249)
T ss_dssp THHHHHTCSS-HHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSC
T ss_pred hHHHHhhcCC-HHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccccccc
Confidence 4566678888 8999999999999 87654432200001 13467778888 6889999999999999998432 2232
Q ss_pred -HHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCC-CCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhcc
Q 014945 193 -DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSD 270 (415)
Q Consensus 193 -~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~ 270 (415)
..... .++.++..+ .+....++..+..++..++..- +.........+++.|...|.+.++.++..++.+|..++.
T Consensus 99 ~~y~~~--llp~ll~~l-~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~ 175 (249)
T 2qk1_A 99 KDYVSL--VFTPLLDRT-KEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMK 175 (249)
T ss_dssp HHHHHH--HHHHHHHGG-GCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHH--HHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence 22222 678888888 6667889999999999998764 211111256788999999999999999999999999885
Q ss_pred CCh---HHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhc
Q 014945 271 GTN---DKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT 312 (415)
Q Consensus 271 ~~~---~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~ 312 (415)
... ......+...+++.+..++.+++..+|..|..+++.++.
T Consensus 176 ~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 176 EEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp HCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 443 333333335789999999999999999999999999874
No 78
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.80 E-value=1.1e-07 Score=85.53 Aligned_cols=242 Identities=14% Similarity=0.100 Sum_probs=138.7
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhH
Q 014945 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 151 (415)
Q Consensus 72 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~ 151 (415)
.+..+.+-++++++-++-.|++.++++.. .+-.+. +.+.+.+.+.+.+ +-++..|+.+..++....++..+
T Consensus 105 v~Nsl~kDl~~~N~~iR~lALRtL~~I~~---~~m~~~-----l~~~lk~~L~d~~-pyVRk~A~l~~~kL~~~~pe~v~ 175 (355)
T 3tjz_B 105 VTSSLTKDMTGKEDSYRGPAVRALCQITD---STMLQA-----IERYMKQAIVDKV-PSVSSSALVSSLHLLKCSFDVVK 175 (355)
T ss_dssp GHHHHHHHHHSSCHHHHHHHHHHHHHHCC---TTTHHH-----HHHHHHHHHTCSS-HHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHhhcCCCcHhHHHHHHHHHhcCCC---HHHHHH-----HHHHHHHHcCCCC-HHHHHHHHHHHHHHhccCHHHHH
Confidence 56888899999999999999999999853 222332 4577888999998 99999999999999987766432
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccch--hHhHHHHHHHHHHHhhh
Q 014945 152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA--KLSMLRNATWTLSNFCR 229 (415)
Q Consensus 152 ~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~--~~~~~~~a~~~l~~l~~ 229 (415)
+.++.+-.++.+.++-++..|+.+|..+...+.. .+..++..+.... ++-.+...+..+..++.
T Consensus 176 -----~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~---------a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~ 241 (355)
T 3tjz_B 176 -----RWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRL---------AVSKMISKFTRHGLKSPFAYCMMIRVASRQLE 241 (355)
T ss_dssp -----TTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHH---------HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC--
T ss_pred -----HHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchH---------HHHHHHHHHhcCCCcChHHHHHHHHHHHHhcc
Confidence 5788999999999999999999999999875432 3445565553321 34444444444444443
Q ss_pred CCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHH
Q 014945 230 GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 309 (415)
Q Consensus 230 ~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~n 309 (415)
.+ ........++.+...|++.++.|..+|++++..+...+.. .. ..++..|..+|.++++.++-.|++.|..
T Consensus 242 ~d---~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~----~~-~~a~~~L~~fLss~d~niryvaLr~L~~ 313 (355)
T 3tjz_B 242 DE---DGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAK----EL-APAVSVLQLFCSSPKAALRYAAVRTLNK 313 (355)
T ss_dssp ------------------CCCCCSSHHHHHHHHHHHTC----------------CCCTHHHHHHSSSSSSHHHHHHCC--
T ss_pred cc---chhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHH----HH-HHHHHHHHHHHcCCCchHHHHHHHHHHH
Confidence 32 1123356778888899999999999999999998653322 11 2345677778888999999999999999
Q ss_pred hhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHH
Q 014945 310 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTI 350 (415)
Q Consensus 310 l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l 350 (415)
++...+...+ ..-..+..++.++ +..+.-.|.-+|
T Consensus 314 l~~~~P~~v~-----~~n~~ie~li~d~-n~sI~t~Aittl 348 (355)
T 3tjz_B 314 VAMKHPSAVT-----ACNLDLENLVTDA-NRSIATLAITTL 348 (355)
T ss_dssp -----------------------------------------
T ss_pred HHHHCcHHHH-----HHHHHHHHHccCC-cHhHHHHHHHHh
Confidence 9987774433 2334577888888 777766655554
No 79
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.80 E-value=1.1e-06 Score=88.92 Aligned_cols=303 Identities=13% Similarity=0.154 Sum_probs=214.8
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCc---
Q 014945 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTS--- 147 (415)
Q Consensus 71 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~--- 147 (415)
..+..+++.+...+......++..+..++... .. ...+..+++..|.+.+.+.. .. ..|+.++..++....
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~k~-~~--~~a~~~~~~~~~~~~~~~ 87 (986)
T 2iw3_A 14 KVLEELFQKLSVATADNRHEIASEVASFLNGN-II--EHDVPEHFFGELAKGIKDKK-TA--ANAMQAVAHIANQSNLSP 87 (986)
T ss_dssp HHHHHHHHHHTTCCTTTHHHHHHHHHHHHTSS-CS--SSSCCHHHHHHHHHHHTSHH-HH--HHHHHHHHHHTCTTTCCT
T ss_pred HHHHHHHhhccccchhHHHHHHHHHHHHHhcc-cc--ccccchhHHHHHHHHHhccC-CH--HHHHHHHHHHHHhcCCCC
Confidence 34566777777655666677888888876543 11 11222367888888888765 33 888999999985321
Q ss_pred hhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHh
Q 014945 148 ENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNF 227 (415)
Q Consensus 148 ~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l 227 (415)
..-..++ +.+|.++..+.+....++..|-.++..++..-+...- ...++.|+..+...........++.++..|
T Consensus 88 ~~e~~~~--~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~ 161 (986)
T 2iw3_A 88 SVEPYIV--QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI----KALLPHLTNAIVETNKWQEKIAILAAFSAM 161 (986)
T ss_dssp TTHHHHH--TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred CcccchH--HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH----HHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 2222333 5789999998888889999988888887754332211 226888999885555788999999999999
Q ss_pred hhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChH-HHHHHHHcCcHHHHHHhcCCCChhhHHHHHHH
Q 014945 228 CRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTND-KIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 306 (415)
Q Consensus 228 ~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~-~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~ 306 (415)
+...+......+..++|.+...+.+..++|...|..++..+|.--++ .+ ...+|.|++.+.+++. ...++..
T Consensus 162 ~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~-----~~~~~~~~~~~~~p~~--~~~~~~~ 234 (986)
T 2iw3_A 162 VDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI-----ERFIPSLIQCIADPTE--VPETVHL 234 (986)
T ss_dssp HHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT-----GGGHHHHHHHHHCTTH--HHHHHHH
T ss_pred HHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch-----hhhHHHHHHHhcChhh--hHHHHHH
Confidence 97654333445578899999999999999999988888887742211 11 2468999999987754 4556666
Q ss_pred HHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhc--CCHHHHHHHHHcCCHHHHHHHhcc-CCHH
Q 014945 307 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA--GNVNQIQAIIEAGIIGPLVNLLLN-AEFE 383 (415)
Q Consensus 307 l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~--~~~~~~~~l~~~~~i~~L~~~l~~-~~~~ 383 (415)
|+....-.......+ +=.+|.|..-|... ...+++.++-++.|+|. .+|.....++.. ++|.|-+.... .+|+
T Consensus 235 l~~~tfv~~v~~~~l--~~~~p~l~r~l~~~-~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~-l~p~~~~~~~~~~~pe 310 (986)
T 2iw3_A 235 LGATTFVAEVTPATL--SIMVPLLSRGLNER-ETGIKRKSAVIIDNMCKLVEDPQVIAPFLGK-LLPGLKSNFATIADPE 310 (986)
T ss_dssp HTTCCCCSCCCHHHH--HHHHHHHHHHHTSS-SHHHHHHHHHHHHHHHTTCCCHHHHHHHHTT-THHHHHHHTTTCCSHH
T ss_pred hhcCeeEeeecchhH--HHHHHHHHhhhccC-cchhheeeEEEEcchhhhcCCHHHHhhhhhh-hhhHHHHHhhccCCHH
Confidence 666554332111111 01367788888877 88899999999999998 788888887765 88888887775 7899
Q ss_pred HHHHHHHHHHHHh
Q 014945 384 IKKEAAWAISNAT 396 (415)
Q Consensus 384 v~~~a~~aL~nl~ 396 (415)
+|..|..|+..+.
T Consensus 311 ~r~~~~~a~~~l~ 323 (986)
T 2iw3_A 311 AREVTLRALKTLR 323 (986)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9998888888773
No 80
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.79 E-value=2.7e-08 Score=85.97 Aligned_cols=190 Identities=10% Similarity=0.081 Sum_probs=139.5
Q ss_pred HHHHhccchhHhHHHHHHHHHHH-hhhCCCCCc--hhhhhchHHHHHHhh-cCCChhHHHHHHHHHHHhccCCh-HHHH-
Q 014945 204 LLAQFNEHAKLSMLRNATWTLSN-FCRGKPQPL--FEQTRPALPALERLI-HSNDDEVLTDACWALSYLSDGTN-DKIQ- 277 (415)
Q Consensus 204 L~~~l~~~~~~~~~~~a~~~l~~-l~~~~~~~~--~~~~~~~l~~l~~lL-~~~d~~v~~~a~~~l~~l~~~~~-~~~~- 277 (415)
+...+ .+.+..-+..++..|.. ++.+.+... ......++..|.+.+ .+.+..++..|+.+++.++.+-. ....
T Consensus 21 f~~~l-~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 21 FQERI-TSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp HHHHH-TCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred HHHHh-hcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 44555 67788889999999999 886533222 222346688888899 68899999999999999985332 1111
Q ss_pred HHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHH-HHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcC
Q 014945 278 AVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCI-INHQALPCLLDLLTQNYKKSIKKEACWTISNITAG 356 (415)
Q Consensus 278 ~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~-~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~ 356 (415)
... .-+++.++..+.+....|+..+..++-.++...+...... ++ .+++.|...+++. ++.+|..++.+|+.++..
T Consensus 100 ~y~-~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~-~ll~~l~~~l~~k-~~~vk~~al~~l~~~~~~ 176 (249)
T 2qk1_A 100 DYV-SLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNE-DMLKDILEHMKHK-TPQIRMECTQLFNASMKE 176 (249)
T ss_dssp HHH-HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTH-HHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHH-HHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHH
Confidence 122 2368999999999889999998888888886442110000 00 3567888999999 999999999999999863
Q ss_pred CH---HHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhC
Q 014945 357 NV---NQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 397 (415)
Q Consensus 357 ~~---~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~ 397 (415)
.+ ......+...++|.|..++.+.+++||..|..+++.++.
T Consensus 177 ~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 177 EKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp CCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred cCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 22 444455534599999999999999999999999999874
No 81
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.69 E-value=1.1e-05 Score=74.36 Aligned_cols=319 Identities=13% Similarity=0.110 Sum_probs=192.9
Q ss_pred cHHHHHHhhc-CCCHHHHHHHHHHHHHHhccCCC---CchhHHHhc-CchHHHHHhhcCCCChHHHHHHHHHHHHHhCCC
Q 014945 72 SLPAMVAGVW-SDDRNIQLDATTQFRKLLSIERS---PPINEVIQS-GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGT 146 (415)
Q Consensus 72 ~i~~l~~~l~-~~~~~~~~~a~~~l~~l~~~~~~---~~~~~~~~~-g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~ 146 (415)
....++++|. ..+.+.....+..+..++... + .....+.+. .....+.....+.+++-....+..++..++..+
T Consensus 78 ~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~-~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~~ 156 (480)
T 1ho8_A 78 TLIPLIHLLSTSDNEDCKKSVQNLIAELLSSD-KYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNG 156 (480)
T ss_dssp THHHHHHHHHSCCCHHHHHHHHHHHHHHHHCS-SSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTSTT
T ss_pred HHHHHHHHHhhcChHHHHHHHHHHHHHHHhcC-cchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhccC
Confidence 5677889888 467888888888898888754 2 112233332 222223332223442455566666666665433
Q ss_pred chhhHHHHhCCChH--HHHHhhCC-CCHHHHHHHHHHHHHhcCCCchhHHHHHhcC--ChHHHHHHhcc-----------
Q 014945 147 SENTRVVIDHGAVP--IFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNG--ALMPLLAQFNE----------- 210 (415)
Q Consensus 147 ~~~~~~~~~~g~i~--~L~~ll~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g--~i~~L~~~l~~----------- 210 (415)
+...+.+- ..+. -++..|.+ ++...+..++.+|..+....+ +|..+.+.+ .+++++.++..
T Consensus 157 ~~~~~~l~--~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~-~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~ 233 (480)
T 1ho8_A 157 LHNVKLVE--KLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPE-YRDVIWLHEKKFMPTLFKILQRATDSQLATRIV 233 (480)
T ss_dssp TCCHHHHH--HHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHH-HHHHHHTTHHHHHHHHHHHHHHHHC--------
T ss_pred CccHhHHH--HHhhhHHHHHHhccccCCchHHHHHHHHHHHhcchh-HHHHHHHcccchhHHHHHHHHHhhccccccccc
Confidence 33211111 1122 34444544 234556788899988887655 688777643 35666554421
Q ss_pred -----chhHhHHHHHHHHHHHhhhCCCCCchhhhhc--hHHHHHHhhcC-CChhHHHHHHHHHHHhccCCh----HHHH-
Q 014945 211 -----HAKLSMLRNATWTLSNFCRGKPQPLFEQTRP--ALPALERLIHS-NDDEVLTDACWALSYLSDGTN----DKIQ- 277 (415)
Q Consensus 211 -----~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~--~l~~l~~lL~~-~d~~v~~~a~~~l~~l~~~~~----~~~~- 277 (415)
....+++..++.+++-|+............+ .++.|+..++. ..++|.+-++.++.|+..... ....
T Consensus 234 ~~~~~~~~~Ql~Y~~ll~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~ 313 (480)
T 1ho8_A 234 ATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQ 313 (480)
T ss_dssp -----CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHH
T ss_pred cccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHH
Confidence 1146678899999999987743211111122 23566666655 468899999999999987652 2222
Q ss_pred HHHHcCcHHHHHHhcCC---CChhhHHHHHHHHHHhh-------cCChHHHHHHH-------------------------
Q 014945 278 AVIEAGVCPRLVELLRH---PSPSVLIPALRTVGNIV-------TGDDMQTQCII------------------------- 322 (415)
Q Consensus 278 ~~~~~~~i~~L~~lL~~---~~~~v~~~a~~~l~nl~-------~~~~~~~~~~~------------------------- 322 (415)
.++..++ ..++..|.. .|+++.... ..|.... +..+++..++.
T Consensus 314 ~~~~~~~-l~~l~~L~~rk~~Dedl~edl-~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e 391 (480)
T 1ho8_A 314 LLLLGNA-LPTVQSLSERKYSDEELRQDI-SNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKK 391 (480)
T ss_dssp HHHHHCH-HHHHHHHHSSCCSSHHHHHHH-HHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSS
T ss_pred HHHHccc-hHHHHHHhhCCCCcHHHHHHH-HHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHh
Confidence 3333445 445566543 344433221 1211111 01112222221
Q ss_pred -HCCChHHHHHHhcC---------CCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHH
Q 014945 323 -NHQALPCLLDLLTQ---------NYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAI 392 (415)
Q Consensus 323 -~~~~l~~L~~ll~~---------~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL 392 (415)
+..++..|.++|.+ +.++.+..-||.=++.++...|..+..+-+.|+=..++++|.++|++|+.+|+.|+
T Consensus 392 ~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~av 471 (480)
T 1ho8_A 392 DNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKAT 471 (480)
T ss_dssp GGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHH
Confidence 12357889999973 22788999999999999998788777777889999999999999999999999999
Q ss_pred HHHh
Q 014945 393 SNAT 396 (415)
Q Consensus 393 ~nl~ 396 (415)
..+.
T Consensus 472 Qklm 475 (480)
T 1ho8_A 472 QAII 475 (480)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8775
No 82
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=98.68 E-value=8.9e-06 Score=84.16 Aligned_cols=300 Identities=12% Similarity=0.086 Sum_probs=173.0
Q ss_pred CCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHH-HhhcCCCChHHHHHHHHHHHHHhCCC---c--hhhHHHHh
Q 014945 82 SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFI-EFLSRDDFPQLQFEAAWALTNIASGT---S--ENTRVVID 155 (415)
Q Consensus 82 ~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~-~ll~~~~~~~i~~~a~~~L~~l~~~~---~--~~~~~~~~ 155 (415)
++++++...++.++...++ --+...++..++++.+. .++. + ++++..|+.||+.+.... + +....+..
T Consensus 206 ~~~~~l~~~~L~~l~s~l~---WI~i~~i~~~~ll~~l~~~~L~--~-~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~ 279 (1023)
T 4hat_C 206 GASSSLIVATLESLLRYLH---WIPYRYIYETNILELLSTKFMT--S-PDTRAITLKCLTEVSNLKIPQDNDLIKRQTVL 279 (1023)
T ss_dssp CSSCHHHHHHHHHHHHHTT---TSCTHHHHSSSHHHHHHTHHHH--S-HHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHH---hCCHHHhcchhHHHHHHHHHcC--C-HHHHHHHHHHHHHHHccccCCchHHHHHHHHH
Confidence 4566777778888888874 35567788889999999 8885 3 789999999999998732 2 12211111
Q ss_pred --CCChHHH--------------HHhhCCCCHHHHHHHHHHHHHhcC-------CCchhHHHHHhcCChHHHHHHhccch
Q 014945 156 --HGAVPIF--------------VRLLSSPTDDVREQAVWALGNVAG-------DSPKCRDLVLSNGALMPLLAQFNEHA 212 (415)
Q Consensus 156 --~g~i~~L--------------~~ll~~~~~~v~~~a~~~L~nl~~-------~~~~~~~~~~~~g~i~~L~~~l~~~~ 212 (415)
.+.++.+ ...-...+.+.....+..+..+.. ..+..+..+. .++..|+.+- ..+
T Consensus 280 lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~--~~l~~Ll~~~-~~~ 356 (1023)
T 4hat_C 280 FFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLL--NAHQYLIQLS-KIE 356 (1023)
T ss_dssp HHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHH--HHHHHHHHHT-TSS
T ss_pred HHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHH--HHHHHHHHhh-CCC
Confidence 0111111 111122345555555655544432 2222222221 1233444433 455
Q ss_pred hHhHHHHHHHHHHHhhhCCCC--Cchhhh----hchHHHHHHhhcCCC--------------------hh-HHHHHH-HH
Q 014945 213 KLSMLRNATWTLSNFCRGKPQ--PLFEQT----RPALPALERLIHSND--------------------DE-VLTDAC-WA 264 (415)
Q Consensus 213 ~~~~~~~a~~~l~~l~~~~~~--~~~~~~----~~~l~~l~~lL~~~d--------------------~~-v~~~a~-~~ 264 (415)
+.++...++..+..+...-.. ...... ..+++.++.-+..++ ++ ...... .+
T Consensus 357 d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~ 436 (1023)
T 4hat_C 357 ERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREV 436 (1023)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHH
Confidence 777888888877777753211 111222 344445554443321 00 111011 22
Q ss_pred HHHhccCC-hHHHHHHHHcCcHHHHHHhcCC--CChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcC-----
Q 014945 265 LSYLSDGT-NDKIQAVIEAGVCPRLVELLRH--PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQ----- 336 (415)
Q Consensus 265 l~~l~~~~-~~~~~~~~~~~~i~~L~~lL~~--~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~----- 336 (415)
|.+++.-. ++..+. +++.+.+.+.+ .+|..++.+++++|.++.+..+....-.-..+++.|+.++.+
T Consensus 437 L~~l~~l~~~~~~~~-----~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d 511 (1023)
T 4hat_C 437 LVYLTHLNVIDTEEI-----MISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKD 511 (1023)
T ss_dssp HHHHHHHCHHHHHHH-----HHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHH
T ss_pred HHHHhccCHHHHHHH-----HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCc
Confidence 22222111 112111 23444444443 579999999999999998876442322233577888888864
Q ss_pred CCccchHHHHHHHHHHHhc---CCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCH
Q 014945 337 NYKKSIKKEACWTISNITA---GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSN 401 (415)
Q Consensus 337 ~~~~~v~~~a~~~l~nl~~---~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~ 401 (415)
+ ...++..++|++|..+. .+++.... ++..|+..+.+++++++..||+++.+++..+..
T Consensus 512 ~-k~~v~~t~~~~lGry~~wl~~~~~~L~~-----vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~ 573 (1023)
T 4hat_C 512 N-KAVVASDIMYVVGQYPRFLKAHWNFLRT-----VILKLFEFMHETHEGVQDMACDTFIKIVQKCKY 573 (1023)
T ss_dssp H-HHHHHHHHHHHHHTCHHHHHHCHHHHHH-----HHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTH
T ss_pred c-hHHHHHHHHHHHHHHHHHHhccHHHHHH-----HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 3 45677789999998775 24443333 566788888778899999999999999986554
No 83
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.68 E-value=5.5e-09 Score=80.92 Aligned_cols=121 Identities=18% Similarity=0.184 Sum_probs=93.7
Q ss_pred cCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhH
Q 014945 113 SGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 192 (415)
Q Consensus 113 ~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~ 192 (415)
...++.|+.+|++++ +.+|..|+++|+.+... .++.|+.+|.++++.++..|+++|+++.. +
T Consensus 11 ~~~~~~l~~~L~~~~-~~vR~~A~~~L~~~~~~------------~~~~L~~~L~d~~~~vR~~A~~aL~~~~~--~--- 72 (131)
T 1te4_A 11 SSGLVPRGSHMADEN-KWVRRDVSTALSRMGDE------------AFEPLLESLSNEDWRIRGAAAWIIGNFQD--E--- 72 (131)
T ss_dssp ----------CCSSC-CCSSSSCCSSTTSCSST------------THHHHHHGGGCSCHHHHHHHHHHHGGGCS--H---
T ss_pred cccHHHHHHHhcCCC-HHHHHHHHHHHHHhCch------------HHHHHHHHHcCCCHHHHHHHHHHHHhcCC--H---
Confidence 346788999999988 89999999999876431 26889999999999999999999999852 1
Q ss_pred HHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHh
Q 014945 193 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYL 268 (415)
Q Consensus 193 ~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l 268 (415)
..++.|+..+ .+.++.++..++|+|..+.. ...++.|..+++++++.++..++++|..+
T Consensus 73 ------~a~~~L~~~L-~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 73 ------RAVEPLIKLL-EDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp ------HHHHHHHHHH-HHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred ------HHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 1477888888 77889999999999999862 35788999999999999999999998754
No 84
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.58 E-value=5.2e-06 Score=76.44 Aligned_cols=235 Identities=14% Similarity=0.112 Sum_probs=158.5
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCC--ChHHHHHhhC----C-------------CCHHHHHHHH
Q 014945 118 RFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHG--AVPIFVRLLS----S-------------PTDDVREQAV 178 (415)
Q Consensus 118 ~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g--~i~~L~~ll~----~-------------~~~~v~~~a~ 178 (415)
.++..|........+..++.+|..+... +++|..+.+.+ .++.++.++. + ....++.+++
T Consensus 171 ~~~~~L~~~~~~~~~~i~v~~L~~Ll~~-~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~l 249 (480)
T 1ho8_A 171 NLINILQNIEQMDTCYVCIRLLQELAVI-PEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSL 249 (480)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHTS-HHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHH
T ss_pred HHHHHhccccCCchHHHHHHHHHHHhcc-hhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHH
Confidence 5666666632256677899999998885 88888887653 3566654332 1 1356788999
Q ss_pred HHHHHhcCCCchhHHHHHhcCCh--HHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchh-----hhhchHHHHHHhhc
Q 014945 179 WALGNVAGDSPKCRDLVLSNGAL--MPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFE-----QTRPALPALERLIH 251 (415)
Q Consensus 179 ~~L~nl~~~~~~~~~~~~~~g~i--~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~-----~~~~~l~~l~~lL~ 251 (415)
.|++-++.+.+ ..+.+...+.. ..|+..+.....+.+.+-++.++.|+....+..... ...+..+.++..|.
T Consensus 250 l~iWlLSF~~~-~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~l~~l~~L~ 328 (480)
T 1ho8_A 250 LLIWLLTFNPV-FANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALPTVQSLS 328 (480)
T ss_dssp HHHHHHTTSHH-HHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHcCHH-HHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccchHHHHHHh
Confidence 99999988776 34555555533 566777766778999999999999999875322211 11122344555553
Q ss_pred C---CChhHHHHHHHHHHHh-------cc--------------CCh-HHHHHHHHc----------CcHHHHHHhcCC--
Q 014945 252 S---NDDEVLTDACWALSYL-------SD--------------GTN-DKIQAVIEA----------GVCPRLVELLRH-- 294 (415)
Q Consensus 252 ~---~d~~v~~~a~~~l~~l-------~~--------------~~~-~~~~~~~~~----------~~i~~L~~lL~~-- 294 (415)
. .|+++..+.-.....| +. .++ ...+.+..+ .++..|+.+|.+
T Consensus 329 ~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~ 408 (480)
T 1ho8_A 329 ERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKV 408 (480)
T ss_dssp SSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHH
T ss_pred hCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhc
Confidence 3 4777665543322222 11 111 111112211 357788888863
Q ss_pred --------CChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhc
Q 014945 295 --------PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 355 (415)
Q Consensus 295 --------~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~ 355 (415)
.++.+..-||.=||.++...|..+..+-+.|+-..++.++.++ +++||.+|..++..+..
T Consensus 409 ~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~-d~~Vr~~AL~avQklm~ 476 (480)
T 1ho8_A 409 RNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHS-DSRVKYEALKATQAIIG 476 (480)
T ss_dssp HTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCS-SHHHHHHHHHHHHHHHH
T ss_pred cccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence 3677888899999999999998888777889999999999999 99999999999987764
No 85
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=98.36 E-value=0.00023 Score=74.71 Aligned_cols=301 Identities=11% Similarity=0.107 Sum_probs=166.2
Q ss_pred CCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHH-hhcCCCChHHHHHHHHHHHHHhCCC--ch---hhHHHHh-
Q 014945 83 DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIE-FLSRDDFPQLQFEAAWALTNIASGT--SE---NTRVVID- 155 (415)
Q Consensus 83 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~-ll~~~~~~~i~~~a~~~L~~l~~~~--~~---~~~~~~~- 155 (415)
+++.++..++.++..+++ -.+...+.+..+++.+.+ ++. + ++++..|+.||..+.... +. ....+..
T Consensus 207 ~~~~~~~~aL~~l~~~l~---wi~~~~~~~~~ll~~l~~~~l~--~-~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l 280 (1049)
T 3m1i_C 207 SSSSLIVATLESLLRYLH---WIPYRYIYETNILELLSTKFMT--S-PDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLF 280 (1049)
T ss_dssp CCHHHHHHHHHHHHHHTT---TSCTHHHHSSSHHHHHHTHHHH--S-HHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHh---hCCHHHHhhhhHHHHHHHHhCC--C-HhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHH
Confidence 456777888888887764 233445666778888774 443 4 899999999999998752 21 1111111
Q ss_pred -CCChHHHHH-hh-------------CCCCHHHHHHHHHHHHHhcC-------CCchhHHHHHhcCChHHHHHHhccchh
Q 014945 156 -HGAVPIFVR-LL-------------SSPTDDVREQAVWALGNVAG-------DSPKCRDLVLSNGALMPLLAQFNEHAK 213 (415)
Q Consensus 156 -~g~i~~L~~-ll-------------~~~~~~v~~~a~~~L~nl~~-------~~~~~~~~~~~~g~i~~L~~~l~~~~~ 213 (415)
.+++..+.. ++ .+.+.+.....+..+..+.. ..+..+..+. .+++.++... ..++
T Consensus 281 ~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~--~~l~~ll~~~-~~~d 357 (1049)
T 3m1i_C 281 FQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLL--NAHQYLIQLS-KIEE 357 (1049)
T ss_dssp HHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHH--HHHHHHHHHH-TSSC
T ss_pred HHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHH--HHHHHHHHHH-cCCc
Confidence 122222221 11 12234444444444443321 1111222211 2445555554 4457
Q ss_pred HhHHHHHHHHHHHhhh----CCCCC--chhhhhchHHHHHHhhcCC-------------------Ch---hHHHHHHHHH
Q 014945 214 LSMLRNATWTLSNFCR----GKPQP--LFEQTRPALPALERLIHSN-------------------DD---EVLTDACWAL 265 (415)
Q Consensus 214 ~~~~~~a~~~l~~l~~----~~~~~--~~~~~~~~l~~l~~lL~~~-------------------d~---~v~~~a~~~l 265 (415)
.++...++..+..++. .+... .......+++.++..+..+ |. ..+..+..+|
T Consensus 358 ~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L 437 (1049)
T 3m1i_C 358 RELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVL 437 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHH
Confidence 7788888888888877 32111 1123345556666554321 00 1233344455
Q ss_pred HHhccCChHHHHHHHHcCcHHHHHHhcC--CCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcC-----CC
Q 014945 266 SYLSDGTNDKIQAVIEAGVCPRLVELLR--HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQ-----NY 338 (415)
Q Consensus 266 ~~l~~~~~~~~~~~~~~~~i~~L~~lL~--~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~-----~~ 338 (415)
..++.......-. -+.+.+-..+. +.+|..++.+++++|.++.+.......-.-..+++.+..+... +
T Consensus 438 ~~l~~~~~~~~l~----~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~- 512 (1049)
T 3m1i_C 438 VYLTHLNVIDTEE----IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDN- 512 (1049)
T ss_dssp HHHHHHCHHHHHH----HHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHH-
T ss_pred HHHHccCHHHHHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccc-
Confidence 5555322221111 12344444454 3678899999999999987544321111111344444443332 3
Q ss_pred ccchHHHHHHHHHHHhc---CCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCHH
Q 014945 339 KKSIKKEACWTISNITA---GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNE 402 (415)
Q Consensus 339 ~~~v~~~a~~~l~nl~~---~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~ 402 (415)
.+.++..++|+++.++. .+++.... +++.++..+.++++.|+..|++++.+++..+...
T Consensus 513 ~~~v~~~~~~~lgry~~~~~~~~~~l~~-----vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~ 574 (1049)
T 3m1i_C 513 KAVVASDIMYVVGQYPRFLKAHWNFLRT-----VILKLFEFMHETHEGVQDMACDTFIKIVQKCKYH 574 (1049)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHCHHHHHH-----HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 45666679999998775 23332222 5777888888888999999999999999865543
No 86
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.34 E-value=9.4e-05 Score=76.83 Aligned_cols=256 Identities=9% Similarity=0.051 Sum_probs=149.2
Q ss_pred HHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhC------CCCHHHHHHHHHHHHHhcCCCchhHHHHH---h-cC
Q 014945 130 QLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLS------SPTDDVREQAVWALGNVAGDSPKCRDLVL---S-NG 199 (415)
Q Consensus 130 ~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~------~~~~~v~~~a~~~L~nl~~~~~~~~~~~~---~-~g 199 (415)
..|..|..+|..++...+ +.+.. .+++.+...+. +++...++.|+.+++.++.....+..... . ..
T Consensus 376 s~R~aa~~~L~~l~~~~~---~~v~~-~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~ 451 (960)
T 1wa5_C 376 TRRRACTDFLKELKEKNE---VLVTN-IFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLN 451 (960)
T ss_dssp CHHHHHHHHHHHHHHHCH---HHHHH-HHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCC
T ss_pred CcHHHHHHHHHHHHHHcc---hhHHH-HHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCccccccccc
Confidence 466777778877776422 22211 13344444444 45678899999999999853211100000 0 01
Q ss_pred ChH----HHHHHhccch---hHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCC
Q 014945 200 ALM----PLLAQFNEHA---KLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGT 272 (415)
Q Consensus 200 ~i~----~L~~~l~~~~---~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~ 272 (415)
..+ .++..+ .++ ++-++..++|+++.++..- .......+++.++..|.+++..|+..|++++.+++...
T Consensus 452 l~~~l~~~v~p~l-~~~~~~~p~vr~~a~~~lg~~~~~~---~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~ 527 (960)
T 1wa5_C 452 VVDFFTKEIAPDL-TSNNIPHIILRVDAIKYIYTFRNQL---TKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIR 527 (960)
T ss_dssp HHHHHHHHTHHHH-HCSSCSCHHHHHHHHHHHHHTGGGS---CHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHhHHHh-cCCCCCCceehHHHHHHHHHHHhhC---CHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcc
Confidence 111 233334 333 7889999999999999763 23456788999999998888999999999999988631
Q ss_pred -----------hHHHHHHHHcCcHHHHHHhcCCCC---h--hhHHHHHHHHHHhhcCCh----HHHHHHHHCCChHHHHH
Q 014945 273 -----------NDKIQAVIEAGVCPRLVELLRHPS---P--SVLIPALRTVGNIVTGDD----MQTQCIINHQALPCLLD 332 (415)
Q Consensus 273 -----------~~~~~~~~~~~~i~~L~~lL~~~~---~--~v~~~a~~~l~nl~~~~~----~~~~~~~~~~~l~~L~~ 332 (415)
.+.....+ ..+++.|..++.... . .....++.+|+.++.... .....++. .++..+..
T Consensus 528 ~~~~~~~~~~~~~~l~p~l-~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~-~L~~~l~~ 605 (960)
T 1wa5_C 528 ESNTSPAFIFHKEDISNST-EILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLA-QFIEIVTI 605 (960)
T ss_dssp SCSSSCCBSSCGGGTTTTH-HHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHH-HHHHHHHH
T ss_pred cccccccccccHHHhhhhH-HHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHH-HHHHHHHH
Confidence 11111111 235666667776531 1 133456666666654211 22222221 12222222
Q ss_pred HhcCCCccchHHHHHHHHHHHhcC-CHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHh
Q 014945 333 LLTQNYKKSIKKEACWTISNITAG-NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT 396 (415)
Q Consensus 333 ll~~~~~~~v~~~a~~~l~nl~~~-~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~ 396 (415)
..+++.++..+..++-+++.++.. .++....+.+ .++|.+...|.....+....+...+..+.
T Consensus 606 ~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~-~~~p~~~~iL~~~~~~~~~~~~~i~~~l~ 669 (960)
T 1wa5_C 606 MAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVD-SMMPTFLTVFSEDIQEFIPYVFQIIAFVV 669 (960)
T ss_dssp HTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHH-HHHHHHHHHHHTTCTTTHHHHHHHHHHHH
T ss_pred HHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHH-HHHHHHHHHHHhhhHhhHHHHHHHHHHHH
Confidence 334443566777788888888874 4444444443 37888888887765666666666666665
No 87
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.25 E-value=0.0001 Score=76.56 Aligned_cols=305 Identities=10% Similarity=0.064 Sum_probs=162.3
Q ss_pred CCCHHHHHHHHHHHHHHhccCC--CCchhHH-HhcCchHH----HHHhhcCC---CChHHHHHHHHHHHHHhCCCchhhH
Q 014945 82 SDDRNIQLDATTQFRKLLSIER--SPPINEV-IQSGVVPR----FIEFLSRD---DFPQLQFEAAWALTNIASGTSENTR 151 (415)
Q Consensus 82 ~~~~~~~~~a~~~l~~l~~~~~--~~~~~~~-~~~g~i~~----L~~ll~~~---~~~~i~~~a~~~L~~l~~~~~~~~~ 151 (415)
+.++..+..|+.++..++.... ....... ....+.+. ++..+.++ . +.+|..|+|+++.++..-+ ..
T Consensus 416 ~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~-p~vr~~a~~~lg~~~~~~~--~~ 492 (960)
T 1wa5_C 416 SKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPH-IILRVDAIKYIYTFRNQLT--KA 492 (960)
T ss_dssp --CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSC-HHHHHHHHHHHHHTGGGSC--HH
T ss_pred chhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCC-ceehHHHHHHHHHHHhhCC--HH
Confidence 4667788888888888864310 1011100 00012222 33344555 5 8999999999999987421 12
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCC-------chh-HHHHHh--cCChHHHHHHhccc----hhHhHH
Q 014945 152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS-------PKC-RDLVLS--NGALMPLLAQFNEH----AKLSML 217 (415)
Q Consensus 152 ~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~-------~~~-~~~~~~--~g~i~~L~~~l~~~----~~~~~~ 217 (415)
.+ ..+++.++..|.+++..|+..|+++|.+++... +.+ ++.+.. ...++.|+.++... .+....
T Consensus 493 ~l--~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~ 570 (960)
T 1wa5_C 493 QL--IELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAEN 570 (960)
T ss_dssp HH--HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSC
T ss_pred HH--HHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCccccc
Confidence 21 246888888888888999999999999998631 111 121111 11344455555332 111123
Q ss_pred HHHHHHHHHhhhCCCCCchhhhhchHHHHHHhh----cC-CChhHHHHHHHHHHHhccC-ChHHHHHHHHcCcHHHHHHh
Q 014945 218 RNATWTLSNFCRGKPQPLFEQTRPALPALERLI----HS-NDDEVLTDACWALSYLSDG-TNDKIQAVIEAGVCPRLVEL 291 (415)
Q Consensus 218 ~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL----~~-~d~~v~~~a~~~l~~l~~~-~~~~~~~~~~~~~i~~L~~l 291 (415)
..++.++..++.............+++.+...+ ++ +++.....++.+++.++.. .++... -+...+++.+...
T Consensus 571 e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~-~~~~~~~p~~~~i 649 (960)
T 1wa5_C 571 EFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLP-LLVDSMMPTFLTV 649 (960)
T ss_dssp HHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHH-HHHHHHHHHHHHH
Confidence 455666665554322222233444555555444 22 3566777788888888765 322222 2333466777777
Q ss_pred cCCCChhhHHHHHHHHHHhhcCC----h---HHHHHHH------HCCCh---------------------HHHH----HH
Q 014945 292 LRHPSPSVLIPALRTVGNIVTGD----D---MQTQCII------NHQAL---------------------PCLL----DL 333 (415)
Q Consensus 292 L~~~~~~v~~~a~~~l~nl~~~~----~---~~~~~~~------~~~~l---------------------~~L~----~l 333 (415)
|..........++.+++.+.... + .....+. ..|.+ +.++ .+
T Consensus 650 L~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~ 729 (960)
T 1wa5_C 650 FSEDIQEFIPYVFQIIAFVVEQSATIPESIKPLAQPLLAPNVWELKGNIPAVTRLLKSFIKTDSSIFPDLVPVLGIFQRL 729 (960)
T ss_dssp HHTTCTTTHHHHHHHHHHHHHHCSSCCTTTGGGHHHHTSGGGGCCTTTHHHHHHHHHHHHHHHGGGCSCSHHHHHHHHHH
T ss_pred HHhhhHhhHHHHHHHHHHHHHhccCCCHHHHHHHHHHcCHHHhcCCCCchhHHHHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 76555555655666555544211 0 0000000 00111 2222 22
Q ss_pred hcCCCccchHHHHHHHHHHHhcCCHHH-HHHHHHcCCHHHHHHHhccC-CHHHHHHHHHHHHHHh
Q 014945 334 LTQNYKKSIKKEACWTISNITAGNVNQ-IQAIIEAGIIGPLVNLLLNA-EFEIKKEAAWAISNAT 396 (415)
Q Consensus 334 l~~~~~~~v~~~a~~~l~nl~~~~~~~-~~~l~~~~~i~~L~~~l~~~-~~~v~~~a~~aL~nl~ 396 (415)
+.+. . ....++++++.++...+.. ....+.. +++.++..+... .++.++..+..++.++
T Consensus 730 ~~~~-~--~~~~a~~ll~~i~~~~~~~~~~~yl~~-i~~~l~~~l~~~~~~~~~~~~l~~~~~~~ 790 (960)
T 1wa5_C 730 IASK-A--YEVHGFDLLEHIMLLIDMNRLRPYIKQ-IAVLLLQRLQNSKTERYVKKLTVFFGLIS 790 (960)
T ss_dssp HTCT-T--THHHHHHHHHHHHHHSCHHHHGGGHHH-HHHHHHHGGGSSCCHHHHHHHHHHHHHHH
T ss_pred hCCC-c--ccchHHHHHHHHHHHCCHHHHHHHHHH-HHHHHHHHHhhCCcHhHHHHHHHHHHHHH
Confidence 3333 2 2478889999888743333 4444443 666777777654 4566656666666555
No 88
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=98.25 E-value=4.5e-05 Score=79.40 Aligned_cols=303 Identities=10% Similarity=0.036 Sum_probs=169.9
Q ss_pred CCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHh-------hcCCCC--hHHHHHHHHHHHHHhCCCchhh---
Q 014945 83 DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEF-------LSRDDF--PQLQFEAAWALTNIASGTSENT--- 150 (415)
Q Consensus 83 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~l-------l~~~~~--~~i~~~a~~~L~~l~~~~~~~~--- 150 (415)
++++.+..|+.++..++...........+. .++|.++.+ +...+. ++.....+..+..++.......
T Consensus 256 ~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 334 (971)
T 2x1g_F 256 DENELAESCLKTMVNIIIQPDCHNYPKTAF-VLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSG 334 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHCSGGGGCHHHHH-HHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHcCccccccHHHHH-HHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788889999999987531111111111 123444332 233331 2666667777776664222111
Q ss_pred ---------HHHHhCCChHHHHHhhCC-----CCHHHHHHHHHHHHHhcCC---------CchhHHHHHh--cCChHHHH
Q 014945 151 ---------RVVIDHGAVPIFVRLLSS-----PTDDVREQAVWALGNVAGD---------SPKCRDLVLS--NGALMPLL 205 (415)
Q Consensus 151 ---------~~~~~~g~i~~L~~ll~~-----~~~~v~~~a~~~L~nl~~~---------~~~~~~~~~~--~g~i~~L~ 205 (415)
..+. ..++.++.+... .++.+...+++.+..++.. .+.....+.. ...++.++
T Consensus 335 ~~~~~~~~~~~l~--~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~ 412 (971)
T 2x1g_F 335 ITSADPELSILVH--RIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILV 412 (971)
T ss_dssp HHTCCHHHHHHHH--HHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHH
T ss_pred hccCcccccHHHH--HHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHH
Confidence 1111 345556655533 4677889999988887531 1111111111 01334444
Q ss_pred HHhccchh--------------HhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcC-----CChhHHHHHHHHHH
Q 014945 206 AQFNEHAK--------------LSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHS-----NDDEVLTDACWALS 266 (415)
Q Consensus 206 ~~l~~~~~--------------~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~-----~d~~v~~~a~~~l~ 266 (415)
..+...++ ...+..+..++..++...+ ......+++.+...+.+ .+...++.++++++
T Consensus 413 ~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~---~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~ 489 (971)
T 2x1g_F 413 RKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLN---DYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQ 489 (971)
T ss_dssp HHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCT---THHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHH
T ss_pred HHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHH
Confidence 44421111 1355667777777775433 22333444555555543 56778999999999
Q ss_pred HhccCChHHHHHHHHcCcHHHHHHhcC-CCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHH
Q 014945 267 YLSDGTNDKIQAVIEAGVCPRLVELLR-HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKE 345 (415)
Q Consensus 267 ~l~~~~~~~~~~~~~~~~i~~L~~lL~-~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~ 345 (415)
.++.+........+. .+++.+..+.. +.++.++..+++++|.++..-....+ .+. .+++.++..+ + +.++..
T Consensus 490 ~iae~~~~~~~~~l~-~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~-~l~-~vl~~l~~~l-~---~~v~~~ 562 (971)
T 2x1g_F 490 SVAEHFGGEEKRQIP-RLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPA-YIP-PAINLLVRGL-N---SSMSAQ 562 (971)
T ss_dssp HTTTC------CHHH-HHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC-----CHH-HHHHHHHHHH-H---SSCHHH
T ss_pred HHHhhcChhhhHHHH-HHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHH-HHH-HHHHHHHHHh-C---hHHHHH
Confidence 998775543221111 13332222222 34789999999999999853221111 111 3456666666 2 689999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhcc--CCHHHHHHHHHHHHHHhCCC
Q 014945 346 ACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN--AEFEIKKEAAWAISNATSGG 399 (415)
Q Consensus 346 a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~--~~~~v~~~a~~aL~nl~~~~ 399 (415)
|++++.+++......+...++. ++..+..++.. .+.+.+..+..+++.++...
T Consensus 563 A~~al~~l~~~~~~~l~p~~~~-ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~ 617 (971)
T 2x1g_F 563 ATLGLKELCRDCQLQLKPYADP-LLNACHASLNTGRMKNSDSVRLMFSIGKLMSLL 617 (971)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHH-HHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHhccccHHH-HHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhC
Confidence 9999999998666655555543 77788888887 35789999999999998653
No 89
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=98.16 E-value=5.9e-05 Score=66.06 Aligned_cols=158 Identities=14% Similarity=0.105 Sum_probs=126.0
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhH
Q 014945 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 151 (415)
Q Consensus 72 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~ 151 (415)
....+++.|.+.+......++..|..+++.+ .....+++..+++..|+......+ ...+..++.+|.++... .....
T Consensus 119 ra~~iiekL~~~~~~~lr~aLfsLk~~~q~D-~~Fa~EFI~~~GL~~Li~vi~~~~-gN~q~Y~L~AL~~LM~~-v~Gm~ 195 (339)
T 3dad_A 119 RVNAILEKLYSSSGPELRRSLFSLKQIFQED-KDLVPEFVHSEGLSCLIRVGAAAD-HNYQSYILRALGQLMLF-VDGML 195 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHTC-TTHHHHHHHTTHHHHHHHHHTTSC-HHHHHHHHHHHHHHTTS-HHHHH
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHhhcc-hHHHHHHHHhccHHHHHHHHHhcC-hHHHHHHHHHHHHHHhc-ccccc
Confidence 3567888999888889999999999977754 788899999999999999999987 89999999999999985 45554
Q ss_pred HHH-hCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHh--------cC--ChHHHHHHhc--cchhHhHHH
Q 014945 152 VVI-DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLS--------NG--ALMPLLAQFN--EHAKLSMLR 218 (415)
Q Consensus 152 ~~~-~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~--------~g--~i~~L~~~l~--~~~~~~~~~ 218 (415)
.++ ....|..+..++.+.+..+...|+..|..++..++.....+.+ .| .+..++.+|. ...+.+++.
T Consensus 196 gvvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~ 275 (339)
T 3dad_A 196 GVVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLV 275 (339)
T ss_dssp HHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHH
T ss_pred chhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHH
Confidence 555 4467888888999888999999999999998766543333322 11 3778889994 256888999
Q ss_pred HHHHHHHHhhhCCC
Q 014945 219 NATWTLSNFCRGKP 232 (415)
Q Consensus 219 ~a~~~l~~l~~~~~ 232 (415)
+++..+..+....+
T Consensus 276 ~amtLIN~lL~~ap 289 (339)
T 3dad_A 276 YTVTLINKTLAALP 289 (339)
T ss_dssp HHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHhcCC
Confidence 98888877776644
No 90
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=98.14 E-value=0.00019 Score=74.72 Aligned_cols=250 Identities=10% Similarity=0.108 Sum_probs=146.0
Q ss_pred HHHHHHHHHHHHhCCCchh-hHHHHhCCChHHHHHhhCC-----CCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHH
Q 014945 131 LQFEAAWALTNIASGTSEN-TRVVIDHGAVPIFVRLLSS-----PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPL 204 (415)
Q Consensus 131 i~~~a~~~L~~l~~~~~~~-~~~~~~~g~i~~L~~ll~~-----~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L 204 (415)
.|..+..+|..++...++. ...+ ++.+-..+.+ .+...++.++++++.++....... ...++.+
T Consensus 437 ~R~~~~~~l~~~~~~~~~~~l~~~-----~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~-----~~~l~~l 506 (971)
T 2x1g_F 437 YRQDISDTFMYCYDVLNDYILEIL-----AAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEE-----KRQIPRL 506 (971)
T ss_dssp HHHHHHHHHHHHHTTCTTHHHHHH-----HHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC-----------CHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHH-----HHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhh-----hHHHHHH
Confidence 4566666777766543311 1111 2233333322 566789999999999987654321 1234444
Q ss_pred HHHh---cc-chhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHH
Q 014945 205 LAQF---NE-HAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVI 280 (415)
Q Consensus 205 ~~~l---~~-~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~ 280 (415)
+.++ .. +.++.++..++|+++.++..-.. .......+++.++..| + +.++..|++++.+++..........+
T Consensus 507 ~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~-~~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l~p~~ 582 (971)
T 2x1g_F 507 MRVLAEIPYEKLNVKLLGTALETMGSYCNWLME-NPAYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQLKPYA 582 (971)
T ss_dssp HHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC-----CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHhcCccccCHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHhccccH
Confidence 4433 21 24788999999999999975322 1245677888888888 2 78999999999999966554433333
Q ss_pred HcCcHHHHHHhcCCC--ChhhHHHHHHHHHHhhcCCh-HHHHHHHHCCChHHHHH----HhcCCC-ccchHHHHHHHHHH
Q 014945 281 EAGVCPRLVELLRHP--SPSVLIPALRTVGNIVTGDD-MQTQCIINHQALPCLLD----LLTQNY-KKSIKKEACWTISN 352 (415)
Q Consensus 281 ~~~~i~~L~~lL~~~--~~~v~~~a~~~l~nl~~~~~-~~~~~~~~~~~l~~L~~----ll~~~~-~~~v~~~a~~~l~n 352 (415)
..++..+..++..+ +...+..++.+++.++..-+ +.....++ .+++.++. +++... ++..+.....++..
T Consensus 583 -~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~-~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~ 660 (971)
T 2x1g_F 583 -DPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLD-IIVSPCFEELQAICQADSKTPAARIRTIFRLNM 660 (971)
T ss_dssp -HHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHH-HHHHHHHHHHHHHHTC---CHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHH
Confidence 24667777777663 56788899999999986432 22222222 23333443 333321 22234444444444
Q ss_pred Hhc-----CC-----------HHHHHHHHHcCCHHHHHHHhcc--CCHHHHHHHHHHHHHHhC
Q 014945 353 ITA-----GN-----------VNQIQAIIEAGIIGPLVNLLLN--AEFEIKKEAAWAISNATS 397 (415)
Q Consensus 353 l~~-----~~-----------~~~~~~l~~~~~i~~L~~~l~~--~~~~v~~~a~~aL~nl~~ 397 (415)
++. +. ++....+. ..+++.+..++.. .+..+.+.++++++.++.
T Consensus 661 L~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~ 722 (971)
T 2x1g_F 661 ISTLFSSLNTDVDEQATDQPIVQPVLLVM-QRTMPIFKRIAEMWVEEIDVLEAACSAMKHAIT 722 (971)
T ss_dssp HHHHHHHHTC-------------CCHHHH-HTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCCCcCcccccccCCCchHHHH-HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 432 11 11112222 3478888888764 367999999999999764
No 91
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=98.10 E-value=0.00014 Score=75.62 Aligned_cols=314 Identities=12% Similarity=0.081 Sum_probs=169.5
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHH----h--cCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCc
Q 014945 74 PAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVI----Q--SGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTS 147 (415)
Q Consensus 74 ~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~----~--~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~ 147 (415)
+.+++.+ ++++.+..|+.++..+++....+.....+ . .+..+.+...+...+ .+.....+.++..++...+
T Consensus 244 ~~l~~~l--~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d-~~~~~~~~~l~~~~~~~~~ 320 (963)
T 2x19_B 244 QAAFAAL--QDSELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGD-METSHGICRIAVALGENHS 320 (963)
T ss_dssp HHHHHHT--TSTTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHh--CCchHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHhH
Confidence 4444444 35667888999999988753111111111 0 011222222334444 5555566666666654211
Q ss_pred hhhHHHHh--------CCChHHHHHhhCC-----CCHHHHHHHHHHHHHhcCCC--------chhHHHHHh--cCChHHH
Q 014945 148 ENTRVVID--------HGAVPIFVRLLSS-----PTDDVREQAVWALGNVAGDS--------PKCRDLVLS--NGALMPL 204 (415)
Q Consensus 148 ~~~~~~~~--------~g~i~~L~~ll~~-----~~~~v~~~a~~~L~nl~~~~--------~~~~~~~~~--~g~i~~L 204 (415)
..+.+ ...++.++.+..+ .++.+...++..+..++.+. +.....+.. ...++.+
T Consensus 321 ---~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l 397 (963)
T 2x19_B 321 ---RALLDQVEHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVL 397 (963)
T ss_dssp ---HHHHHCGGGHHHHHHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHcCccchHHHHHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 11110 1345556655554 34556666776666665411 111111110 0123333
Q ss_pred HHHhccchh--------------HhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhh----cCCChhHHHHHHHHHH
Q 014945 205 LAQFNEHAK--------------LSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLI----HSNDDEVLTDACWALS 266 (415)
Q Consensus 205 ~~~l~~~~~--------------~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL----~~~d~~v~~~a~~~l~ 266 (415)
+..+....+ .+.+..+..++..++...+ ......+++.+...+ .+.+...++.++++++
T Consensus 398 l~~~~~p~~~~~~~~~~de~~~~~~~r~~~~~~L~~~~~~~~---~~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~ 474 (963)
T 2x19_B 398 LHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEMLG---AELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQ 474 (963)
T ss_dssp HHHHSCCCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHT---HHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHH
T ss_pred HHHHcCCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHcc---HHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 333321111 1224455556666554322 112233444555555 4567788999999999
Q ss_pred HhccCChHHHHHHHHcCcHHHHHHhc---CCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchH
Q 014945 267 YLSDGTNDKIQAVIEAGVCPRLVELL---RHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIK 343 (415)
Q Consensus 267 ~l~~~~~~~~~~~~~~~~i~~L~~lL---~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~ 343 (415)
.++.+..... ...++.++..+ .++++.++..+++++|.++..-.... ..+ ..+++.++..+.+ +.|+
T Consensus 475 ~i~~~~~~~~-----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~-~~l-~~vl~~l~~~l~~---~~V~ 544 (963)
T 2x19_B 475 SIAETIDVNY-----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHP-VMI-NSVLPLVLHALGN---PELS 544 (963)
T ss_dssp HHTTSCCSSC-----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCH-HHH-TTTHHHHHHHTTC---GGGH
T ss_pred HHHhhcCchh-----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCH-HHH-HHHHHHHHHHhCC---chHH
Confidence 9987644211 12233333332 34578899999999999986322111 122 3788888888844 6899
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhcc--CCHHHHHHHHHHHHHHhCCCC-HHHHHHH
Q 014945 344 KEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN--AEFEIKKEAAWAISNATSGGS-NEQIKYK 407 (415)
Q Consensus 344 ~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~--~~~~v~~~a~~aL~nl~~~~~-~~~~~~l 407 (415)
..||+++.+++...++.....++ +++..|..++.. -+.+.+..+..+++.++...+ .+..+|+
T Consensus 545 ~~A~~al~~l~~~~~~~l~p~~~-~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~ 610 (963)
T 2x19_B 545 VSSVSTLKKICRECKYDLPPYAA-NIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNL 610 (963)
T ss_dssp HHHHHHHHHHHHHTGGGCTTTHH-HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHH-HHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 99999999999643332222222 245566666665 356889999999999987655 3443443
No 92
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=98.08 E-value=0.0029 Score=65.51 Aligned_cols=297 Identities=12% Similarity=0.135 Sum_probs=163.8
Q ss_pred CCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHH-HHhhcCCCChHHHHHHHHHHHHHhCCC-chhhHHHHh--CC
Q 014945 82 SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRF-IEFLSRDDFPQLQFEAAWALTNIASGT-SENTRVVID--HG 157 (415)
Q Consensus 82 ~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L-~~ll~~~~~~~i~~~a~~~L~~l~~~~-~~~~~~~~~--~g 157 (415)
++++++...++.++..+++ --+...+++.++++.+ ..+|. + ++++..|+.||+.+.... ++....+.. .+
T Consensus 218 ~~~~~lv~~~L~~L~~~~s---WI~i~~i~~~~ll~~L~~~~L~--~-~~~r~aA~dcL~eIv~k~~~~~~~~~~~lf~~ 291 (1073)
T 3gjx_A 218 SQNAPLVHATLETLLRFLN---WIPLGYIFETKLISTLIYKFLN--V-PMFRNVSLKCLTEIAGVSVSQYEEQFETLFTL 291 (1073)
T ss_dssp CCCHHHHHHHHHHHHHHTT---TSCTHHHHSSSHHHHHHHHTSS--S-HHHHHHHHHHHHHHHHSCSGGGHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHH---hcCHHHhccchHHHHHHHHhcC--C-hHHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 4677888888899998874 3456778889999988 47764 3 789999999999988742 222222221 01
Q ss_pred ChHHHHHhh-------------CCCCHHHHHHHHHHHHHhcCC-------CchhHHHHHhcCChHHHHHHhccchhHhHH
Q 014945 158 AVPIFVRLL-------------SSPTDDVREQAVWALGNVAGD-------SPKCRDLVLSNGALMPLLAQFNEHAKLSML 217 (415)
Q Consensus 158 ~i~~L~~ll-------------~~~~~~v~~~a~~~L~nl~~~-------~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~ 217 (415)
++..+..++ .+.+.+....-+..+..+... .|..+..+.. ++..++.+- ..++.++.
T Consensus 292 ~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~lIe~~p~~~~~l~~--~l~~ll~~s-~~~d~ei~ 368 (1073)
T 3gjx_A 292 TMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLREALME--ALHYMLLVS-EVEETEIF 368 (1073)
T ss_dssp HHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHH--HHHHHHHHT-TCSCHHHH
T ss_pred HHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHH--HHHHHHHHh-CCCcHHHH
Confidence 222222222 112234444444555444321 1111111111 233334433 45678888
Q ss_pred HHHHHHHHHhhhC----CCC----C-------------chhhhhchHHH----HHHhhcCCC------------------
Q 014945 218 RNATWTLSNFCRG----KPQ----P-------------LFEQTRPALPA----LERLIHSND------------------ 254 (415)
Q Consensus 218 ~~a~~~l~~l~~~----~~~----~-------------~~~~~~~~l~~----l~~lL~~~d------------------ 254 (415)
+.+...+..|... .+. . ......+++.. ++.-+..++
T Consensus 369 kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~~ 448 (1073)
T 3gjx_A 369 KICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFMK 448 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEEECS
T ss_pred HHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCCCccccccCcccchHHHHHHh
Confidence 8877776655432 110 0 01112333333 333332211
Q ss_pred --h-----hHHHHHHHHHHHhccCC-hHHHHHHHHcCcHHHHHHhcCC--CChhhHHHHHHHHHHhhcCChHHHH-HHHH
Q 014945 255 --D-----EVLTDACWALSYLSDGT-NDKIQAVIEAGVCPRLVELLRH--PSPSVLIPALRTVGNIVTGDDMQTQ-CIIN 323 (415)
Q Consensus 255 --~-----~v~~~a~~~l~~l~~~~-~~~~~~~~~~~~i~~L~~lL~~--~~~~v~~~a~~~l~nl~~~~~~~~~-~~~~ 323 (415)
. ++..+++ .+++.-. ++.... +++.+.+.+.. .+|...+.++|++|.++..-.+... .++-
T Consensus 449 d~~~~~ly~~mrd~L---~~lt~l~~~~~~~i-----~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp 520 (1073)
T 3gjx_A 449 DTDSINLYKNMRETL---VYLTHLDYVDTEII-----MTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLV 520 (1073)
T ss_dssp SCHHHHHHHHHHHHH---HHHHHHCHHHHHHH-----HHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHH
T ss_pred hcchHHHHHHHHHHH---HHHhcCCHHHHHHH-----HHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHH
Confidence 0 1222233 3333211 222111 23445444443 4688999999999999865443222 2222
Q ss_pred CCChHHHHHHhcCCC----ccchHHHHHHHHHHHhc---CCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHh
Q 014945 324 HQALPCLLDLLTQNY----KKSIKKEACWTISNITA---GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT 396 (415)
Q Consensus 324 ~~~l~~L~~ll~~~~----~~~v~~~a~~~l~nl~~---~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~ 396 (415)
.+++.|+.+..++. ...++...+|++|.... .+++.... ++..|++.+.+.++.|+..|+.|+..++
T Consensus 521 -~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~-----vl~~L~~~m~~~~~~vq~aA~~af~~i~ 594 (1073)
T 3gjx_A 521 -TVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKT-----VVNKLFEFMHETHDGVQDMACDTFIKIA 594 (1073)
T ss_dssp -HHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHH-----HHHHHHHHTTCCSTTHHHHHHHHHHHHH
T ss_pred -HHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHH-----HHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 45666776665441 23466667799998765 23443333 5778888888889999999999999999
Q ss_pred CCCCH
Q 014945 397 SGGSN 401 (415)
Q Consensus 397 ~~~~~ 401 (415)
..+..
T Consensus 595 ~~C~~ 599 (1073)
T 3gjx_A 595 QKCRR 599 (1073)
T ss_dssp HHTGG
T ss_pred HHHHH
Confidence 77654
No 93
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=98.03 E-value=2.8e-05 Score=80.27 Aligned_cols=303 Identities=11% Similarity=0.023 Sum_probs=165.1
Q ss_pred CCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCch--hhHHHHhCCCh
Q 014945 82 SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSE--NTRVVIDHGAV 159 (415)
Q Consensus 82 ~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~--~~~~~~~~g~i 159 (415)
++++.....++.++...++ -.+...++..++++.+.++|.+ ++++..|+.||+.+...... .+..++..=.+
T Consensus 204 ~~~~~l~~~~L~~l~s~i~---wi~~~~i~~~~ll~~l~~~L~~---~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L 277 (980)
T 3ibv_A 204 AKNYGTVGLCLQVYAQWVS---WININLIVNEPCMNLLYSFLQI---EELRCAACETMTEIVNKKMKPLEKLNLLNILNL 277 (980)
T ss_dssp TTCHHHHHHHHHHHHHHTT---TSCHHHHHCHHHHHHHHHHTTS---HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHh---hcCHHhhhcchHHHHHHHHcCC---hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhH
Confidence 4778888899999999875 3456677778899999999875 78999999999998875432 22222221001
Q ss_pred HHHHHhhC--CCCHHHHHHHHHHHHHhc------CCCc-----hhHHH--HHhcCChHHHHHHhccchhHhHHHHHHHHH
Q 014945 160 PIFVRLLS--SPTDDVREQAVWALGNVA------GDSP-----KCRDL--VLSNGALMPLLAQFNEHAKLSMLRNATWTL 224 (415)
Q Consensus 160 ~~L~~ll~--~~~~~v~~~a~~~L~nl~------~~~~-----~~~~~--~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l 224 (415)
...+.-+. ..|.+..+..+..+..++ ...+ +.+.. -.-.+.++.++.++ .+++.++...++..+
T Consensus 278 ~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~-~~~~deVs~~t~~Fw 356 (980)
T 3ibv_A 278 NLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYL-SDDYDETSTAVFPFL 356 (980)
T ss_dssp HHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHH-TCSSHHHHHTTHHHH
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHh-CCCchhHHHHHHHHH
Confidence 11122122 356666554444443321 1111 11100 11124677777887 445556666666666
Q ss_pred HHhhhCC---CC--Cch----hhhhchHHHHHHhhcCCC----------------hhHHHHHHHHHHHh-ccCChHH-HH
Q 014945 225 SNFCRGK---PQ--PLF----EQTRPALPALERLIHSND----------------DEVLTDACWALSYL-SDGTNDK-IQ 277 (415)
Q Consensus 225 ~~l~~~~---~~--~~~----~~~~~~l~~l~~lL~~~d----------------~~v~~~a~~~l~~l-~~~~~~~-~~ 277 (415)
..+.... +. ... .....+++.++.-+..++ .+.|.... .+... +.-.++. ..
T Consensus 357 ~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~-~l~d~~~~l~~~~~l~ 435 (980)
T 3ibv_A 357 SDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLK-IFQDTINSIDSSLFSS 435 (980)
T ss_dssp HHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHH-HHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHH-HHHHHHHhcChHHHHH
Confidence 6555321 11 111 223444555554443211 12444444 33222 2212211 11
Q ss_pred HHHHcCcHHHHHHhcC---CCChhhHHHHHHHHHHhhcCChHHHHHHH-HC----CChHHHHHHhc-----CCCccchHH
Q 014945 278 AVIEAGVCPRLVELLR---HPSPSVLIPALRTVGNIVTGDDMQTQCII-NH----QALPCLLDLLT-----QNYKKSIKK 344 (415)
Q Consensus 278 ~~~~~~~i~~L~~lL~---~~~~~v~~~a~~~l~nl~~~~~~~~~~~~-~~----~~l~~L~~ll~-----~~~~~~v~~ 344 (415)
.+.+ -+.+.+.+.+. +.+|..++.++.+|+.++.+-......+. .. .+++.+..++. .+ .+.|+.
T Consensus 436 ~~~~-~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~-hp~V~~ 513 (980)
T 3ibv_A 436 YMYS-AITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHP-HPLVQL 513 (980)
T ss_dssp HHHH-HHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCC-CHHHHH
T ss_pred HHHH-HHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCC-CHHHHH
Confidence 1111 11222333342 34688999999999999987542111100 01 23455555554 45 789999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHH------hccCCHHHHHHHHHHHHHHhCCCC
Q 014945 345 EACWTISNITAGNVNQIQAIIEAGIIGPLVNL------LLNAEFEIKKEAAWAISNATSGGS 400 (415)
Q Consensus 345 ~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~------l~~~~~~v~~~a~~aL~nl~~~~~ 400 (415)
.++|+++..+.--.. ....++.++.. +.+++.+|+..|+.++.+++..+.
T Consensus 514 ~~~~~l~rys~~~~~------~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~ 569 (980)
T 3ibv_A 514 LYMEILVRYASFFDY------ESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIK 569 (980)
T ss_dssp HHHHHHHHTGGGGGT------CCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhc------CchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhh
Confidence 999999998862111 11234444443 345678899999999999987654
No 94
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.02 E-value=0.0025 Score=64.79 Aligned_cols=261 Identities=12% Similarity=0.106 Sum_probs=176.4
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCC-CCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCC-chh
Q 014945 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIER-SPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGT-SEN 149 (415)
Q Consensus 72 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~-~~~ 149 (415)
.+..+.+.+.+.... ..|+..+..++.... .++. +..--+.+|.++..+.+.. ..++..|-.++..+...- ++.
T Consensus 55 ~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~-e~~~~~~~~~~~~~~~dk~-~~v~~aa~~~~~~~~~~~~~~a 130 (986)
T 2iw3_A 55 FFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSV-EPYIVQLVPAICTNAGNKD-KEIQSVASETLISIVNAVNPVA 130 (986)
T ss_dssp HHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTT-HHHHHTTHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHSCGGG
T ss_pred HHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCc-ccchHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHHHhCCHHH
Confidence 455666666653332 778888888764332 2233 2222257999999999888 889888877777666532 333
Q ss_pred hHHHHhCCChHHHHHhhCCC-CHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhh
Q 014945 150 TRVVIDHGAVPIFVRLLSSP-TDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC 228 (415)
Q Consensus 150 ~~~~~~~g~i~~L~~ll~~~-~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~ 228 (415)
. . .++|.|+..|.+. ....+..|+.++..++...+..-...+ ...+|.+...+ -+..+++...+..++..+|
T Consensus 131 ~-~----~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~-~d~k~~v~~~~~~~~~~~~ 203 (986)
T 2iw3_A 131 I-K----ALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRM-PELIPVLSETM-WDTKKEVKAAATAAMTKAT 203 (986)
T ss_dssp H-H----HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHH-HHHHHHHHHHT-TCSSHHHHHHHHHHHHHHG
T ss_pred H-H----HHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhc-cchhcchHhhc-ccCcHHHHHHHHHHHHHHH
Confidence 3 2 3588999988654 578899999999999976653211111 12566666666 6778899999999999999
Q ss_pred hCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccC---ChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHH
Q 014945 229 RGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDG---TNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR 305 (415)
Q Consensus 229 ~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~---~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~ 305 (415)
..-.+.+ +.+.+|.|++.+.+++. ...++..|+.-+-- ...... + ++|.|..-|...+..+...++-
T Consensus 204 ~~~~n~d---~~~~~~~~~~~~~~p~~--~~~~~~~l~~~tfv~~v~~~~l~-~----~~p~l~r~l~~~~~~~~r~~~~ 273 (986)
T 2iw3_A 204 ETVDNKD---IERFIPSLIQCIADPTE--VPETVHLLGATTFVAEVTPATLS-I----MVPLLSRGLNERETGIKRKSAV 273 (986)
T ss_dssp GGCCCTT---TGGGHHHHHHHHHCTTH--HHHHHHHHTTCCCCSCCCHHHHH-H----HHHHHHHHHTSSSHHHHHHHHH
T ss_pred hcCCCcc---hhhhHHHHHHHhcChhh--hHHHHHHhhcCeeEeeecchhHH-H----HHHHHHhhhccCcchhheeeEE
Confidence 7644333 46789999999987743 34455555544322 111111 1 3577888888888888999999
Q ss_pred HHHHhhcC--ChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHh
Q 014945 306 TVGNIVTG--DDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNIT 354 (415)
Q Consensus 306 ~l~nl~~~--~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~ 354 (415)
++.|+|.- ++..... +-..++|-+.+....-.+|++|..|..++..+.
T Consensus 274 ~~~n~~~lv~~~~~~~~-f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~ 323 (986)
T 2iw3_A 274 IIDNMCKLVEDPQVIAP-FLGKLLPGLKSNFATIADPEAREVTLRALKTLR 323 (986)
T ss_dssp HHHHHHTTCCCHHHHHH-HHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHH
T ss_pred EEcchhhhcCCHHHHhh-hhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHH
Confidence 99999963 4444443 344788888887776668999988888877664
No 95
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=98.01 E-value=5.6e-05 Score=66.22 Aligned_cols=155 Identities=14% Similarity=0.108 Sum_probs=121.8
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHH-
Q 014945 244 PALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCII- 322 (415)
Q Consensus 244 ~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~- 322 (415)
..+++-|.+.+...+..++.-|..+...+......++..+++..|+......+...+..++++++++....+ ....++
T Consensus 121 ~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~-Gm~gvvs 199 (339)
T 3dad_A 121 NAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVD-GMLGVVA 199 (339)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHH-HHHHHHH
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccc-cccchhC
Confidence 345566667788888999999998665666778889999999999999999999999999999999998644 444455
Q ss_pred HCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHH--------c--CCHHHHHHHhc---cCCHHHHHHHH
Q 014945 323 NHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE--------A--GIIGPLVNLLL---NAEFEIKKEAA 389 (415)
Q Consensus 323 ~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~--------~--~~i~~L~~~l~---~~~~~v~~~a~ 389 (415)
...++..+..++.+. +..|.+.|...|..++..++.....+.+ . ..++.|+.+|. ..|.+++..|.
T Consensus 200 ~~~fI~~lyslv~s~-~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~am 278 (339)
T 3dad_A 200 HSDTIQWLYTLCASL-SRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTV 278 (339)
T ss_dssp CHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHH
T ss_pred CHHHHHHHHHHHcCc-cHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHH
Confidence 347889999999976 8999999999999998754333322221 1 23789999997 68899999998
Q ss_pred HHHHHHhCCCC
Q 014945 390 WAISNATSGGS 400 (415)
Q Consensus 390 ~aL~nl~~~~~ 400 (415)
..+..+..+++
T Consensus 279 tLIN~lL~~ap 289 (339)
T 3dad_A 279 TLINKTLAALP 289 (339)
T ss_dssp HHHHHHHHHCS
T ss_pred HHHHHHHhcCC
Confidence 88888776655
No 96
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=97.93 E-value=8.9e-05 Score=68.92 Aligned_cols=259 Identities=12% Similarity=0.071 Sum_probs=166.4
Q ss_pred hhhccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCc
Q 014945 68 KKLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTS 147 (415)
Q Consensus 68 ~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~ 147 (415)
+..+-...|+..|-++.++.|.-|+..||.++...... . |-. ...+ . ..|+++++-++-+
T Consensus 171 WPfqfcE~L~~DLFdp~WEiRHGAALGLREILR~hG~G-A------GR~-------~~~N-~---DLAvRLLCVLALD-- 230 (800)
T 3oc3_A 171 NVLDFFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNG-G------DIQ-------IRVD-S---KLFSKIYEILVTD-- 230 (800)
T ss_dssp SGGGTTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC-----------CC-------CCCC-T---THHHHHHHHHHHB--
T ss_pred CHHHHHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccC-C------cee-------cccc-H---HHHHHHHHHHHhc--
Confidence 44445678888889999999999999999998654110 0 111 1222 2 4566666666653
Q ss_pred hhhHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHH
Q 014945 148 ENTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSN 226 (415)
Q Consensus 148 ~~~~~~~~~g~i~~L~~ll~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~ 226 (415)
.+- .+.++ --..|||.|+.+|+.+ ..-+.- ..++..|+..+ .....+++.-++..|.+
T Consensus 231 RFG-------------DYVSDqVVAPVRETaAQtLGaL-~hLp~e------~~IL~qLV~~l-~~~~WEVRHGGLLGLKY 289 (800)
T 3oc3_A 231 KFN-------------DFVDDRTVAPVRDAAAYLLSRI-YPLIGP------NDIIEQLVGFL-DSGDWQVQFSGLIALGY 289 (800)
T ss_dssp CCB-------------BCSSSSCBCHHHHHHHHHHHHH-TTTSCS------CCHHHHHTTGG-GCSCHHHHHHHHHHHHH
T ss_pred ccc-------------ccccCeeeeehHHHHHHHHHHH-HhCChh------HHHHHHHHhhc-CCCCeeehhhhHHHHHH
Confidence 111 11222 1245899999999988 544431 33455555544 55678888888888888
Q ss_pred hhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCC--hhhHHHHH
Q 014945 227 FCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPS--PSVLIPAL 304 (415)
Q Consensus 227 l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~--~~v~~~a~ 304 (415)
+..- -. ...++++.+...|.+.|++|+..|+.+|.-++ .++.... ++..+...|.+-+ ..-....+
T Consensus 290 L~DL-L~----~Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA--~p~~l~~-----LL~iLWd~L~~LDDLSASTgSVM 357 (800)
T 3oc3_A 290 LKEF-VE----DKDGLCRKLVSLLSSPDEDIKLLSAELLCHFP--ITDSLDL-----VLEKCWKNIESEELISVSKTSNL 357 (800)
T ss_dssp TGGG-CC----CHHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC--CSSTHHH-----HHHHHHHHHHTCCSCCTTHHHHH
T ss_pred HHHH-HH----HHHHHHHHHHhhcCCcccHHHHHHHHHhhhhc--chhhHHH-----HHHHHHHHhhhhcccchhhHHHH
Confidence 8211 11 15778889999999999999999999999988 2222332 3455566654322 12344566
Q ss_pred HHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHH
Q 014945 305 RTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEI 384 (415)
Q Consensus 305 ~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v 384 (415)
..|+.++..+... -.+...+|.|..++.|+ -+.||..+..++..+. +...... ..-++|-..+.++
T Consensus 358 dLLAkL~s~p~~a---~~dp~LVPRL~PFLRHt-ITSVR~AVL~TL~tfL--~~~~LRL--------IFQNILLE~neeI 423 (800)
T 3oc3_A 358 SLLTKIYRENPEL---SIPPERLKDIFPCFTSP-VPEVRTSILNMVKNLS--EESIDFL--------VAEVVLIEEKDEI 423 (800)
T ss_dssp HHHHHHHHHCTTC---CCCSGGGGGTGGGGTCS-SHHHHHHHHHHTTTCC--CHHHHHH--------HHHHHHHCSCHHH
T ss_pred HHHHHHHcCCccc---ccChHHHHHHHhhhcCC-cHHHHHHHHHHHHHHH--hhhHHHH--------HHHHHHhCCcHHH
Confidence 6777777655311 11237899999999999 9999999999998877 2332222 2223455678888
Q ss_pred HHHHHHHHH
Q 014945 385 KKEAAWAIS 393 (415)
Q Consensus 385 ~~~a~~aL~ 393 (415)
+..+..+..
T Consensus 424 l~lS~~VWk 432 (800)
T 3oc3_A 424 REMAIKLLK 432 (800)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 887777664
No 97
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=97.88 E-value=0.003 Score=65.44 Aligned_cols=157 Identities=14% Similarity=0.136 Sum_probs=99.1
Q ss_pred chHHHHHHhhcC--CChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCC-----CChhhHHHHHHHHHHhhcC
Q 014945 241 PALPALERLIHS--NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-----PSPSVLIPALRTVGNIVTG 313 (415)
Q Consensus 241 ~~l~~l~~lL~~--~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~-----~~~~v~~~a~~~l~nl~~~ 313 (415)
..++.+...+.+ .+...++.++|+++.++.+..+....-.-..+++.|+.++.+ +...++..++|++|.++.-
T Consensus 451 ~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~w 530 (1023)
T 4hat_C 451 IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRF 530 (1023)
T ss_dssp HHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHH
Confidence 344445444543 578899999999999998765432212223467778877753 2334666788999988753
Q ss_pred ChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHH--------HHHHcCCHHHHHHHhccCCHHHH
Q 014945 314 DDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQ--------AIIEAGIIGPLVNLLLNAEFEIK 385 (415)
Q Consensus 314 ~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~--------~l~~~~~i~~L~~~l~~~~~~v~ 385 (415)
-....+ .+. .++..++..+..+ ++.++..|||++.++|..+..... ..++ .++..+......-+++-+
T Consensus 531 l~~~~~-~L~-~vl~~L~~~l~~~-~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~-~il~~l~~~~~~l~~~~~ 606 (1023)
T 4hat_C 531 LKAHWN-FLR-TVILKLFEFMHET-HEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQ-TIIRDIQKTTADLQPQQV 606 (1023)
T ss_dssp HHHCHH-HHH-HHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHH-HHHHTHHHHHTTSCHHHH
T ss_pred HhccHH-HHH-HHHHHHHHHhhcC-CHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHH-HHHHHHHHHHHhCCHHHH
Confidence 221111 111 3455666666666 788999999999999974332221 0111 134444455555677788
Q ss_pred HHHHHHHHHHhCCCCH
Q 014945 386 KEAAWAISNATSGGSN 401 (415)
Q Consensus 386 ~~a~~aL~nl~~~~~~ 401 (415)
..+..+++.++...+.
T Consensus 607 ~~lyeai~~vi~~~~~ 622 (1023)
T 4hat_C 607 HTFYKACGIIISEERS 622 (1023)
T ss_dssp HHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHhCCC
Confidence 8999999999987653
No 98
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=97.87 E-value=0.00058 Score=59.82 Aligned_cols=191 Identities=13% Similarity=0.113 Sum_probs=127.9
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchh-HHH--hcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCch
Q 014945 72 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPIN-EVI--QSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSE 148 (415)
Q Consensus 72 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~-~~~--~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~ 148 (415)
.+| +-+.|.+.++..|..|+..+.+++......... ... -....+.+-..+.+.+ ..++..++.++..++.....
T Consensus 11 klp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN-~~v~~~al~~l~~~~~~~~~ 88 (278)
T 4ffb_C 11 TLP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSN-VVAQEQAIVALNSLIDAFAS 88 (278)
T ss_dssp CCC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSS-HHHHHHHHHHHHHHHTTCC-
T ss_pred cCC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccch-HHHHHHHHHHHHHHHHHhhh
Confidence 445 667899999999999999999987643211111 111 1234667778888888 89999999999988753211
Q ss_pred -----hhHHHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHH
Q 014945 149 -----NTRVVIDHGAVPIFVR-LLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATW 222 (415)
Q Consensus 149 -----~~~~~~~~g~i~~L~~-ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~ 222 (415)
......-..+++.|+. .+.+....++..+..++..++...... .. .++.++..+ .+.++.++..++.
T Consensus 89 ~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~-~~-----~~e~l~~~l-~~Knpkv~~~~l~ 161 (278)
T 4ffb_C 89 SSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI-TQ-----SVELVIPFF-EKKLPKLIAAAAN 161 (278)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS-HH-----HHHHHGGGG-GCSCHHHHHHHHH
T ss_pred hhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH-HH-----HHHHHHHHH-hccCHHHHHHHHH
Confidence 1111112346777876 478888999999998888776332211 11 234455556 6778888888888
Q ss_pred HHHHhhhCC--C-CCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccC
Q 014945 223 TLSNFCRGK--P-QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDG 271 (415)
Q Consensus 223 ~l~~l~~~~--~-~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~ 271 (415)
.|..+.... . .........+++.+..++.+.|+.||..|..++..+-..
T Consensus 162 ~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~ 213 (278)
T 4ffb_C 162 CVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV 213 (278)
T ss_dssp HHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 888776542 1 122334456778888999999999999999999877544
No 99
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=97.83 E-value=0.0024 Score=67.01 Aligned_cols=235 Identities=11% Similarity=0.120 Sum_probs=132.2
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhcC----CCc---hhHHHHHhcCChHHHHHHhccch-----------------
Q 014945 157 GAVPIFVRLLSSPTDDVREQAVWALGNVAG----DSP---KCRDLVLSNGALMPLLAQFNEHA----------------- 212 (415)
Q Consensus 157 g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~----~~~---~~~~~~~~~g~i~~L~~~l~~~~----------------- 212 (415)
.+++.++.....++.++...++..+..++. ... ..+..+.. .++.++..+....
T Consensus 344 ~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~--Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~ 421 (1049)
T 3m1i_C 344 NAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQ--LRLVIIENMVRPEEVLVVENDEGEIVREFV 421 (1049)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHH--HHHHHHHTCCCCTTCCEEECTTSCEEECSS
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHH--HHHHHHHhcCCCcceeeeeCCCCcchHhhh
Confidence 356777777677888899999888877765 211 11111111 2333333332110
Q ss_pred -h---HhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhc--CCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHH
Q 014945 213 -K---LSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH--SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCP 286 (415)
Q Consensus 213 -~---~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~--~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~ 286 (415)
+ ......+..+|..++...+ ......+.+.+...+. +.+...++.++++++.++.........-.-..+++
T Consensus 422 ~d~d~~~~~~~~~~~L~~l~~~~~---~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~ 498 (1049)
T 3m1i_C 422 KESDTIQLYKSEREVLVYLTHLNV---IDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIK 498 (1049)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCH---HHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHccCH---HHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHH
Confidence 0 1234455566666663321 1222334455555554 35678899999999999865433211111123455
Q ss_pred HHHHhcCC-----CChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHH
Q 014945 287 RLVELLRH-----PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQI 361 (415)
Q Consensus 287 ~L~~lL~~-----~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~ 361 (415)
.+..+... +.+.++..+++++|.++..-....+ .+. .+++.++..+.++ ++.|+..||+++.+++...+...
T Consensus 499 ~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~-~l~-~vl~~ll~~l~~~-~~~V~~~A~~al~~l~~~~~~~l 575 (1049)
T 3m1i_C 499 DLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWN-FLR-TVILKLFEFMHET-HEGVQDMACDTFIKIVQKCKYHF 575 (1049)
T ss_dssp HHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHH-HHH-HHHHHHHHHTTSS-CHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHH-HHH-HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHHHh
Confidence 55554322 2334555689999988753221111 111 4567788888887 89999999999999997432221
Q ss_pred H--------HHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhCCCC
Q 014945 362 Q--------AIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGS 400 (415)
Q Consensus 362 ~--------~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~ 400 (415)
. ..++ .++..+..++..-+.+-......+++.++...+
T Consensus 576 ~~~~~~~~~p~~~-~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~ 621 (1049)
T 3m1i_C 576 VIQQPRESEPFIQ-TIIRDIQKTTADLQPQQVHTFYKACGIIISEER 621 (1049)
T ss_dssp HSCCTTCSSCHHH-HHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCC
T ss_pred hcccCCCCCcHHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCC
Confidence 1 1111 244455555655556566777788888865544
No 100
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=97.60 E-value=0.0018 Score=67.19 Aligned_cols=220 Identities=9% Similarity=0.087 Sum_probs=133.0
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhc--cchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHH
Q 014945 167 SSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN--EHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALP 244 (415)
Q Consensus 167 ~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~--~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~ 244 (415)
.+.+...++.++++++.++...... ....++.++..+. ..+++.++..++|+++.++..-.. .......+++
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~-----~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~-~~~~l~~vl~ 532 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVN-----YSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLAD-HPVMINSVLP 532 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSS-----CCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHH-CHHHHTTTHH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCch-----hhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHH
Confidence 5567888999999999999764321 1123444554442 224677999999999999865211 1245678889
Q ss_pred HHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCC--CChhhHHHHHHHHHHhhcCCh-HHHHHH
Q 014945 245 ALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH--PSPSVLIPALRTVGNIVTGDD-MQTQCI 321 (415)
Q Consensus 245 ~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~--~~~~v~~~a~~~l~nl~~~~~-~~~~~~ 321 (415)
.++..|++ +.|+..|++++.+++..........+ ..+++.+..++.. -+...+..++.+++.++...+ +.....
T Consensus 533 ~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~-~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~ 609 (963)
T 2x19_B 533 LVLHALGN--PELSVSSVSTLKKICRECKYDLPPYA-ANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKN 609 (963)
T ss_dssp HHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTH-HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 99988854 88999999999999864432211111 1345555566654 246788889999999986543 333333
Q ss_pred HHCCChHHHHHHh----cCCCccchHHH---HHHHHHHHhc--CC--H------------------HHHHHHHHcCCHHH
Q 014945 322 INHQALPCLLDLL----TQNYKKSIKKE---ACWTISNITA--GN--V------------------NQIQAIIEAGIIGP 372 (415)
Q Consensus 322 ~~~~~l~~L~~ll----~~~~~~~v~~~---a~~~l~nl~~--~~--~------------------~~~~~l~~~~~i~~ 372 (415)
++ .+++.+...+ +...++..+.. ...+|+.+.. +. + +....+.+ .+++.
T Consensus 610 ~~-~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 687 (963)
T 2x19_B 610 LH-SLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQ-QVFQL 687 (963)
T ss_dssp HH-HHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHH-HHHHH
T ss_pred HH-HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHH-HHHHH
Confidence 32 3444444433 22213444443 3333444432 10 0 11222222 25666
Q ss_pred HHHHhcc--CCHHHHHHHHHHHHHHhC
Q 014945 373 LVNLLLN--AEFEIKKEAAWAISNATS 397 (415)
Q Consensus 373 L~~~l~~--~~~~v~~~a~~aL~nl~~ 397 (415)
+..++.. .++.+.+.++.++..++.
T Consensus 688 ~~~~l~~~~~~~~v~e~~~~~l~~~~~ 714 (963)
T 2x19_B 688 IQKVLSKWLNDAQVVEAVCAIFEKSVK 714 (963)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCchHHHHHHHHHHHHHHH
Confidence 6666653 567899999999998764
No 101
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=97.59 E-value=0.00085 Score=58.72 Aligned_cols=186 Identities=13% Similarity=0.114 Sum_probs=125.2
Q ss_pred HHHHhccchhHhHHHHHHHHHHHhhhCCCCCc-----hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCCh-----
Q 014945 204 LLAQFNEHAKLSMLRNATWTLSNFCRGKPQPL-----FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTN----- 273 (415)
Q Consensus 204 L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~-----~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~----- 273 (415)
+-..| .+.+...+..++..+..+....+... ........+.+...+.+.+..+...++.++..++....
T Consensus 14 l~e~l-~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~ 92 (278)
T 4ffb_C 14 LEERL-TYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLK 92 (278)
T ss_dssp HHHHT-TCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CC
T ss_pred HHHhc-ccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 45566 77888899999998888776542211 11234556677788889999999999999988765321
Q ss_pred HHHHHHHHcCcHHHHHH-hcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHH
Q 014945 274 DKIQAVIEAGVCPRLVE-LLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISN 352 (415)
Q Consensus 274 ~~~~~~~~~~~i~~L~~-lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~n 352 (415)
.......-..+++.|+. .|.+....++..++.++..++...... . .+++.+...+.+. ++.++.+++..|..
T Consensus 93 ~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~-~-----~~~e~l~~~l~~K-npkv~~~~l~~l~~ 165 (278)
T 4ffb_C 93 NAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI-T-----QSVELVIPFFEKK-LPKLIAAAANCVYE 165 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS-H-----HHHHHHGGGGGCS-CHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH-H-----HHHHHHHHHHhcc-CHHHHHHHHHHHHH
Confidence 11111122346677776 478888889999988887776533211 1 1245667778888 99999999988888
Q ss_pred Hhc--CCHH-HHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhCC
Q 014945 353 ITA--GNVN-QIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSG 398 (415)
Q Consensus 353 l~~--~~~~-~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~ 398 (415)
+.. |... .....+. .+++.+..++.+.++.||..|..++..+...
T Consensus 166 ~l~~fg~~~~~~k~~l~-~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~ 213 (278)
T 4ffb_C 166 LMAAFGLTNVNVQTFLP-ELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV 213 (278)
T ss_dssp HHHHHTTTTCCHHHHHH-HHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred HHHHhCCCcCCchhHHH-HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 764 2110 1122222 2566788889999999999999999888654
No 102
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=97.50 E-value=0.0016 Score=55.81 Aligned_cols=176 Identities=15% Similarity=0.079 Sum_probs=113.9
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhc---cchhHhHHHHHHHHHHHhh----hCCCCC
Q 014945 162 FVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN---EHAKLSMLRNATWTLSNFC----RGKPQP 234 (415)
Q Consensus 162 L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~---~~~~~~~~~~a~~~l~~l~----~~~~~~ 234 (415)
+...|-+.+..-+..++..|.......+ +.+.. .+..++..+. .+++..+...++.++..+. ......
T Consensus 51 ~~~~lfs~d~k~~~~ale~L~~~l~~~~---~~~~~--~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~ 125 (266)
T 2of3_A 51 LMSQLFHKDFKQHLAALDSLVRLADTSP---RSLLS--NSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPM 125 (266)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHHHHHCH---HHHHH--THHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHhhhCh---HHHHH--HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccc
Confidence 3344444555555556655555443322 12221 2333333221 3557777777777766653 322222
Q ss_pred chhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCC
Q 014945 235 LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGD 314 (415)
Q Consensus 235 ~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~ 314 (415)
.......++|.|+.-+.++.+.++..+-.++..+..-.+. ..+++.+...+.+.++..+..++..++.+....
T Consensus 126 ~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~-------~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~ 198 (266)
T 2of3_A 126 SQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP-------LKMTPMLLDALKSKNARQRSECLLVIEYYITNA 198 (266)
T ss_dssp CHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH-------HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhc
Confidence 2333467889999999888889998887777666531111 135678888899999999999999999997532
Q ss_pred hHHHHHHHHCCCh---HHHHHHhcCCCccchHHHHHHHHHHHhc
Q 014945 315 DMQTQCIINHQAL---PCLLDLLTQNYKKSIKKEACWTISNITA 355 (415)
Q Consensus 315 ~~~~~~~~~~~~l---~~L~~ll~~~~~~~v~~~a~~~l~nl~~ 355 (415)
... ....+ +.+..++.++ +..||..|..++..+-.
T Consensus 199 G~~-----~~~~l~~~~~ia~ll~D~-d~~VR~aAl~~lve~y~ 236 (266)
T 2of3_A 199 GIS-----PLKSLSVEKTVAPFVGDK-DVNVRNAAINVLVACFK 236 (266)
T ss_dssp CSG-----GGGGGCHHHHHGGGGGCS-SHHHHHHHHHHHHHHHH
T ss_pred CCC-----ccccccchHHHHHHHcCC-CHHHHHHHHHHHHHHHH
Confidence 211 23568 9999999999 99999999999987765
No 103
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=97.48 E-value=6.6e-05 Score=63.90 Aligned_cols=185 Identities=16% Similarity=0.082 Sum_probs=128.5
Q ss_pred hhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCC
Q 014945 79 GVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGA 158 (415)
Q Consensus 79 ~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~ 158 (415)
++.++++.++..++..+ + ...|..++++++ +.++..++..|.
T Consensus 58 ll~d~~~~VR~~AA~~l---------~----------~~~l~~L~~D~~-~~VR~~aA~~L~------------------ 99 (244)
T 1lrv_A 58 YLADPFWERRAIAVRYS---------P----------VEALTPLIRDSD-EVVRRAVAYRLP------------------ 99 (244)
T ss_dssp GTTCSSHHHHHHHHTTS---------C----------GGGGGGGTTCSS-HHHHHHHHTTSC------------------
T ss_pred HhcCCCHHHHHHHHHhC---------C----------HHHHHHHccCcC-HHHHHHHHHHCC------------------
Confidence 45678888888877632 0 233677788888 999999886421
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhh
Q 014945 159 VPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQ 238 (415)
Q Consensus 159 i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~ 238 (415)
.+.|..++.+++..|+..++..+ . + ..+..++ ++++..++..++.. +.
T Consensus 100 ~~~L~~ll~D~d~~VR~~aA~~l---~---~------------~~L~~L~-~D~d~~VR~~aA~~---l~---------- 147 (244)
T 1lrv_A 100 REQLSALMFDEDREVRITVADRL---P---L------------EQLEQMA-ADRDYLVRAYVVQR---IP---------- 147 (244)
T ss_dssp SGGGGGTTTCSCHHHHHHHHHHS---C---T------------GGGGGGT-TCSSHHHHHHHHHH---SC----------
T ss_pred HHHHHHHHcCCCHHHHHHHHHhC---C---H------------HHHHHHH-cCCCHHHHHHHHHh---cC----------
Confidence 14577788899999998888743 1 1 1233334 77888888888763 11
Q ss_pred hhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHH
Q 014945 239 TRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQT 318 (415)
Q Consensus 239 ~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~ 318 (415)
.+.+..+++++++.|+..++..+ . .+.+..++.++++.|+..+...+
T Consensus 148 ----~~~l~~l~~D~d~~VR~~aa~~l---~---------------~~ll~~ll~D~d~~VR~aaa~~l----------- 194 (244)
T 1lrv_A 148 ----PGRLFRFMRDEDRQVRKLVAKRL---P---------------EESLGLMTQDPEPEVRRIVASRL----------- 194 (244)
T ss_dssp ----GGGGGGTTTCSCHHHHHHHHHHS---C---------------GGGGGGSTTCSSHHHHHHHHHHC-----------
T ss_pred ----HHHHHHHHcCCCHHHHHHHHHcC---C---------------HHHHHHHHcCCCHHHHHHHHHhC-----------
Confidence 12345677888999999987751 1 13455677899999999888653
Q ss_pred HHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHH
Q 014945 319 QCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAIS 393 (415)
Q Consensus 319 ~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~ 393 (415)
..+.|..++.++ ++.||..++..++ .+.|..+ .++++.|+..|...|+
T Consensus 195 -------~~~~L~~Ll~D~-d~~VR~~aa~~l~------------------~~~L~~L-~D~~~~VR~aa~~~L~ 242 (244)
T 1lrv_A 195 -------RGDDLLELLHDP-DWTVRLAAVEHAS------------------LEALREL-DEPDPEVRLAIAGRLG 242 (244)
T ss_dssp -------CGGGGGGGGGCS-SHHHHHHHHHHSC------------------HHHHHHC-CCCCHHHHHHHHCCC-
T ss_pred -------CHHHHHHHHcCC-CHHHHHHHHHcCC------------------HHHHHHc-cCCCHHHHHHHHHHhC
Confidence 124677888888 9999999998863 2345445 8899999999876653
No 104
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=97.46 E-value=0.012 Score=51.58 Aligned_cols=241 Identities=13% Similarity=0.139 Sum_probs=158.6
Q ss_pred HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCch----hHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhh
Q 014945 153 VIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK----CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC 228 (415)
Q Consensus 153 ~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~----~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~ 228 (415)
+...+.+..|+..|..-+-+.+..+..++.++...... ..+.+.. -.+.+..++..-.++++.-.+-..|....
T Consensus 74 i~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~--~peil~~L~~gYe~~diAl~~G~mLReci 151 (341)
T 1upk_A 74 LYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT--QQNILFMLLKGYESPEIALNCGIMLRECI 151 (341)
T ss_dssp HHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT--CTHHHHHHHHGGGSTTTHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHc--CHHHHHHHHHhhccchhHhHHHHHHHHHH
Confidence 34457788888888887888888999989988765432 2233332 23333333422335556566666666666
Q ss_pred hCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHc---CcHHHHHHhcCCCChhhHHHHHH
Q 014945 229 RGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA---GVCPRLVELLRHPSPSVLIPALR 305 (415)
Q Consensus 229 ~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~---~~i~~L~~lL~~~~~~v~~~a~~ 305 (415)
++..-.......+.+-.+.+.++.++-+|..+|..++..+..........++.. .++.....+|.+++--++..++.
T Consensus 152 r~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlK 231 (341)
T 1upk_A 152 RHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLK 231 (341)
T ss_dssp TSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred HhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHH
Confidence 553333333334566677788889999999999999998876655444455554 35777888899999999999999
Q ss_pred HHHHhhcCCh--HH-HHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcC---CHHHHHHHHH--cCCHHHHHHHh
Q 014945 306 TVGNIVTGDD--MQ-TQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG---NVNQIQAIIE--AGIIGPLVNLL 377 (415)
Q Consensus 306 ~l~nl~~~~~--~~-~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~---~~~~~~~l~~--~~~i~~L~~~l 377 (415)
.||.+..... .. ...+-+..-+..++.+|.+. +..++-+|..++--++++ +++...-++. ..++..|-++.
T Consensus 232 LLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~-sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~~Nr~kLl~fl~~f~ 310 (341)
T 1upk_A 232 LLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDK-SRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEFLSKFQ 310 (341)
T ss_dssp HHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHHHHHHHTT
T ss_pred HHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCc-hhchhhhhhhheeeeeeCCCCChHHHHHHHHHHHHHHHHHHhCC
Confidence 9999997533 22 22222335688999999999 999999999999988873 4554444443 23444444444
Q ss_pred ccC--CHHHHHHHHHHHHHHh
Q 014945 378 LNA--EFEIKKEAAWAISNAT 396 (415)
Q Consensus 378 ~~~--~~~v~~~a~~aL~nl~ 396 (415)
.+. |.....+=...+..+.
T Consensus 311 ~d~~eDeqF~dEK~~lI~~I~ 331 (341)
T 1upk_A 311 NDRTEDEQFNDEKTYLVKQIR 331 (341)
T ss_dssp TTC-CCSHHHHHHHHHHHHHH
T ss_pred CCCcchhhHHHHHHHHHHHHH
Confidence 433 4555555445554444
No 105
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=97.32 E-value=0.0056 Score=52.39 Aligned_cols=178 Identities=10% Similarity=0.060 Sum_probs=121.5
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhc--CchHHHHHhhcCCCChHHHHHHHHHHHHHhC----CCc
Q 014945 74 PAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQS--GVVPRFIEFLSRDDFPQLQFEAAWALTNIAS----GTS 147 (415)
Q Consensus 74 ~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~--g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~----~~~ 147 (415)
+.+...|.+.|...+..|+..|...++.. .+.++.. .+++++.--+.+++ ..+...++..|..+.. ...
T Consensus 49 ~~~~~~lfs~d~k~~~~ale~L~~~l~~~----~~~~~~~lDll~kw~~lr~~d~N-~~v~~~~L~~L~~l~~~l~~~~y 123 (266)
T 2of3_A 49 VSLMSQLFHKDFKQHLAALDSLVRLADTS----PRSLLSNSDLLLKWCTLRFFETN-PAALIKVLELCKVIVELIRDTET 123 (266)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHHC----HHHHHHTHHHHHHHHHHHTTSCC-HHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhhC----hHHHHHHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHHHHHHhccc
Confidence 56777888899999999999999877542 1222211 12444432333556 8888888888877642 111
Q ss_pred hhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHh
Q 014945 148 ENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNF 227 (415)
Q Consensus 148 ~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l 227 (415)
.....-. .-++|.|+.-+.++.+.+++.+-.++..++.-.+. ..+.+.++.-+ .+.+...+..++..+..+
T Consensus 124 ~~~~~ea-~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~-------~~v~~~l~~g~-ksKN~R~R~e~l~~l~~l 194 (266)
T 2of3_A 124 PMSQEEV-SAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP-------LKMTPMLLDAL-KSKNARQRSECLLVIEYY 194 (266)
T ss_dssp CCCHHHH-HHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHGG-GCSCHHHHHHHHHHHHHH
T ss_pred cchHHHH-HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH-------HHHHHHHHHHH-ccCCHHHHHHHHHHHHHH
Confidence 1222111 13689999999888899999888888777532221 12456677777 777888899998888888
Q ss_pred hhCCCCCchhhhhchH---HHHHHhhcCCChhHHHHHHHHHHHhc
Q 014945 228 CRGKPQPLFEQTRPAL---PALERLIHSNDDEVLTDACWALSYLS 269 (415)
Q Consensus 228 ~~~~~~~~~~~~~~~l---~~l~~lL~~~d~~v~~~a~~~l~~l~ 269 (415)
....... ....+ |.+..++.+.|..|+..|+.++..+-
T Consensus 195 i~~~G~~----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y 235 (266)
T 2of3_A 195 ITNAGIS----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACF 235 (266)
T ss_dssp HHHHCSG----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHH
T ss_pred HHhcCCC----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 7654222 13467 99999999999999999999998654
No 106
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=97.22 E-value=0.059 Score=47.25 Aligned_cols=202 Identities=12% Similarity=0.111 Sum_probs=147.4
Q ss_pred HHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhh------hchHHHHHHhhcCCChhHHHHHHHHHH
Q 014945 193 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQT------RPALPALERLIHSNDDEVLTDACWALS 266 (415)
Q Consensus 193 ~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~------~~~l~~l~~lL~~~d~~v~~~a~~~l~ 266 (415)
..+...+.+..|+..| ..-+.+.++.++.++.++.+.........+ ..++..|+..-.+ +++.-.+-..|.
T Consensus 72 ~ei~~~dll~~Li~~l-~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~--~diAl~~G~mLR 148 (341)
T 1upk_A 72 QELYNSGLLSTLVADL-QLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYES--PEIALNCGIMLR 148 (341)
T ss_dssp HHHHHHSHHHHHHHTG-GGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGS--TTTHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHhc-ccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhcc--chhHhHHHHHHH
Confidence 3455667788888888 777888999999999999988744333222 2344444444433 333333333344
Q ss_pred HhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHC---CChHHHHHHhcCCCccchH
Q 014945 267 YLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINH---QALPCLLDLLTQNYKKSIK 343 (415)
Q Consensus 267 ~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~---~~l~~L~~ll~~~~~~~v~ 343 (415)
.+.. .+.....++..+.+-.+......++-++...|..++..+.+.........+.. .++.....++.++ +.-+|
T Consensus 149 ecir-~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~-NYVTk 226 (341)
T 1upk_A 149 ECIR-HEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSE-NYVTK 226 (341)
T ss_dssp HHHT-SHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCS-SHHHH
T ss_pred HHHH-hHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCC-cchhH
Confidence 4443 44455667788888889999999999999999999999988777665556544 3567778899998 99999
Q ss_pred HHHHHHHHHHhcC--CHHHHHHHHH-cCCHHHHHHHhccCCHHHHHHHHHHHHHHhCCC
Q 014945 344 KEACWTISNITAG--NVNQIQAIIE-AGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG 399 (415)
Q Consensus 344 ~~a~~~l~nl~~~--~~~~~~~l~~-~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~~ 399 (415)
..+...|+.+... +.......+. ..-+..++.+|.+....++.+|-..+.-++...
T Consensus 227 RQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP 285 (341)
T 1upk_A 227 RQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANP 285 (341)
T ss_dssp HHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCC
Confidence 9999999999864 5555555553 345889999999999999999999988887543
No 107
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=96.93 E-value=0.026 Score=46.93 Aligned_cols=145 Identities=17% Similarity=0.079 Sum_probs=106.5
Q ss_pred chHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHHhcC-CCchhH
Q 014945 115 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVR-LLSSPTDDVREQAVWALGNVAG-DSPKCR 192 (415)
Q Consensus 115 ~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~-ll~~~~~~v~~~a~~~L~nl~~-~~~~~~ 192 (415)
.++....+.+++. .++|..|+..|+.+ .. . ..+++.+.. +..+++-.|++.+..+++.++. ..++.
T Consensus 72 ~~~la~~L~~~~~-deVR~~Av~lLg~~-~~-~--------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~- 139 (240)
T 3l9t_A 72 IKKLAFLAYQSDV-YQVRMYAVFLFGYL-SK-D--------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK- 139 (240)
T ss_dssp HHHHHHHHHTCSS-HHHHHHHHHHHHHT-TT-S--------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT-
T ss_pred HHHHHHHHHhCcc-hHHHHHHHHHHHhc-cC-c--------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH-
Confidence 3566677777777 89999999998887 31 1 124666666 5556788999999999999874 33321
Q ss_pred HHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCC
Q 014945 193 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGT 272 (415)
Q Consensus 193 ~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~ 272 (415)
.++.+.... .+++..+++.|+..+.--+.. + ........++|.|..+..+++.-|+....|.|..++..+
T Consensus 140 -------~l~~~~~W~-~d~n~~VRR~Ase~~rpW~~~-~-~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~ 209 (240)
T 3l9t_A 140 -------ALPIIDEWL-KSSNLHTRRAATEGLRIWTNR-P-YFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKF 209 (240)
T ss_dssp -------THHHHHHHH-HCSSHHHHHHHHHHTCSGGGS-T-TTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred -------HHHHHHHHh-cCCCHHHHHHHHHhhHHHhcc-c-hhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhC
Confidence 456666666 888999999999887654433 2 112233557888888888889999999999999999999
Q ss_pred hHHHHHHHH
Q 014945 273 NDKIQAVIE 281 (415)
Q Consensus 273 ~~~~~~~~~ 281 (415)
++....+++
T Consensus 210 Pd~V~~~~~ 218 (240)
T 3l9t_A 210 PDLVKIELK 218 (240)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 887665554
No 108
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=96.87 E-value=0.013 Score=60.65 Aligned_cols=254 Identities=15% Similarity=0.088 Sum_probs=137.4
Q ss_pred hHHHHHHHHHHHHHhCCCchhhHHH-HhCC----ChHHHHHhhC-----CCCHHHHHHHHHHHHHhcCCCchhHHHHHhc
Q 014945 129 PQLQFEAAWALTNIASGTSENTRVV-IDHG----AVPIFVRLLS-----SPTDDVREQAVWALGNVAGDSPKCRDLVLSN 198 (415)
Q Consensus 129 ~~i~~~a~~~L~~l~~~~~~~~~~~-~~~g----~i~~L~~ll~-----~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~ 198 (415)
....+.++.+|+.++.+-......+ -... .++.+..++. .+++.++..++|+++..+..-.. ..
T Consensus 457 W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~------~~ 530 (980)
T 3ibv_A 457 WQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDY------ES 530 (980)
T ss_dssp HHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGT------CC
T ss_pred HHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhc------Cc
Confidence 5678889999999988644322111 0011 3444555544 57899999999999998754321 12
Q ss_pred CChHHHHHHhcc-----chhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcC-----CCh-------------
Q 014945 199 GALMPLLAQFNE-----HAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHS-----NDD------------- 255 (415)
Q Consensus 199 g~i~~L~~~l~~-----~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~-----~d~------------- 255 (415)
..+++++..+.. +++..++..|+.++.++|+.-...-......++..+..+|.. .+.
T Consensus 531 ~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~ 610 (980)
T 3ibv_A 531 AAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRN 610 (980)
T ss_dssp TTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHT
T ss_pred hhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHHhhcCcCCCCCcccccccchhhhccc
Confidence 356666666533 456789999999999999875332223334455555555542 111
Q ss_pred ---hHHHHHHHHHHHhc---cCChHHHHHHHHcCcHHH----HHHhcCCC----Chhh-HHHHHHHHHHhhcCChHH---
Q 014945 256 ---EVLTDACWALSYLS---DGTNDKIQAVIEAGVCPR----LVELLRHP----SPSV-LIPALRTVGNIVTGDDMQ--- 317 (415)
Q Consensus 256 ---~v~~~a~~~l~~l~---~~~~~~~~~~~~~~~i~~----L~~lL~~~----~~~v-~~~a~~~l~nl~~~~~~~--- 317 (415)
+-+.....+++.+. ..+.+.....++ .+++. +-..+... +... ....+.++|+++.+-+..
T Consensus 611 ~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~-~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf~~~~~~ 689 (980)
T 3ibv_A 611 SDFNSQLYLFETVGVLISSGNLTPEEQALYCD-SLINALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGFPARGSE 689 (980)
T ss_dssp TTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH-HHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTSCSCC-C
T ss_pred CCchHHHHHHHHHHHHHhCCCCCHHHHHHHHH-HHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHhccCCcccCC
Confidence 12333445555554 223333222222 23333 33333221 1111 224567788888664321
Q ss_pred ---HHHHHHCCChHHHHHHhc--CCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccC-CHHHHHHHHHH
Q 014945 318 ---TQCIINHQALPCLLDLLT--QNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA-EFEIKKEAAWA 391 (415)
Q Consensus 318 ---~~~~~~~~~l~~L~~ll~--~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~-~~~v~~~a~~a 391 (415)
....+. .+.+.+...+. .. +..||..++.++..+...-...+.. .+|.++..+-.. +..-....+|.
T Consensus 690 ~~p~~~~f~-~~~~~il~~l~~~~~-~~~irea~~~~~~r~i~~lg~~~~p-----~lp~~i~~ll~~~~~~e~~~fL~l 762 (980)
T 3ibv_A 690 EVAWLASFN-KASDEIFLILDRMGF-NEDIRGAVRFTSGRIINVVGPDMLP-----KVPQLISILLNSIDMNELVDVLSF 762 (980)
T ss_dssp CCSHHHHHH-HHHHHHHHHHHHSCC-SHHHHHHHHHHHHHHTTTTHHHHTT-----THHHHHHHHHHHCCTTTHHHHHHH
T ss_pred CCcHHHHHH-HHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHccHhHHH-----HHHHHHHHHHhcCCHHHHHHHHHH
Confidence 111111 34455555554 33 6789999999999999754443322 455555544321 22223344555
Q ss_pred HHHHh
Q 014945 392 ISNAT 396 (415)
Q Consensus 392 L~nl~ 396 (415)
++.+.
T Consensus 763 ~~qli 767 (980)
T 3ibv_A 763 ISQLI 767 (980)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55554
No 109
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=96.79 E-value=0.19 Score=52.16 Aligned_cols=222 Identities=13% Similarity=0.077 Sum_probs=138.1
Q ss_pred hccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCC---
Q 014945 70 LESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGT--- 146 (415)
Q Consensus 70 ~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~--- 146 (415)
+..+..++..+.+++++.+..|-..|..+-. .+ +....+..+|..+.++.+|..|+.+|.+.....
T Consensus 27 v~~Le~lv~~ly~p~~~~r~qA~~~L~q~q~---sp--------~aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~ 95 (1073)
T 3gjx_A 27 INLLDNVVNCLYHGEGAQQRMAQEVLTHLKE---HP--------DAWTRVDTILEFSQNMNTKYYGLQILENVIKTRWKI 95 (1073)
T ss_dssp HHHHHHHHHTTTCSSHHHHHHHHHHHHTSSC---CS--------CHHHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHc---Cc--------hHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhh
Confidence 3567888988888888878888777876532 12 234455556655545899999999998876521
Q ss_pred -chhhHHHHhCCChHHHHHhhCC-----CCHHHHHHHHHHHHHhcCCC-chhHHHHHhcCChHHHHHHhccchhHhHHHH
Q 014945 147 -SENTRVVIDHGAVPIFVRLLSS-----PTDDVREQAVWALGNVAGDS-PKCRDLVLSNGALMPLLAQFNEHAKLSMLRN 219 (415)
Q Consensus 147 -~~~~~~~~~~g~i~~L~~ll~~-----~~~~v~~~a~~~L~nl~~~~-~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~ 219 (415)
+......++..++..+.+...+ .++.++.+.+.+++.++... |. ...+.++.++..+. .++.....
T Consensus 96 L~~e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~-----~Wp~fi~dLv~~~~--~~~~~~~~ 168 (1073)
T 3gjx_A 96 LPRNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPK-----HWPTFISDIVGASR--TSESLCQN 168 (1073)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTT-----TCTTHHHHHHHHHH--HCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChh-----hccHHHHHHHHHhC--CCHHHHHH
Confidence 2222333334455656555433 24667788888888887321 11 12345666777662 23445666
Q ss_pred HHHHHHHhhhCCCCC------c------hhhhh----chHHHHHHhhc-CCChhHHHHHHHHHHHhccCChHHHHHHHHc
Q 014945 220 ATWTLSNFCRGKPQP------L------FEQTR----PALPALERLIH-SNDDEVLTDACWALSYLSDGTNDKIQAVIEA 282 (415)
Q Consensus 220 a~~~l~~l~~~~~~~------~------~~~~~----~~l~~l~~lL~-~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~ 282 (415)
.+.+|..|++.-... . ...+. .+++.+...|. ..++.+...++.++..+...-+ +..+++.
T Consensus 169 ~L~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~--i~~i~~~ 246 (1073)
T 3gjx_A 169 NMVILKLLSEEVFDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIP--LGYIFET 246 (1073)
T ss_dssp HHHHHHHHHHHHTTSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSC--THHHHSS
T ss_pred HHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcC--HHHhccc
Confidence 777777777652110 0 01112 23333334443 3577888888999998887754 3457788
Q ss_pred CcHHHH-HHhcCCCChhhHHHHHHHHHHhhcC
Q 014945 283 GVCPRL-VELLRHPSPSVLIPALRTVGNIVTG 313 (415)
Q Consensus 283 ~~i~~L-~~lL~~~~~~v~~~a~~~l~nl~~~ 313 (415)
++++.+ ..+| +++.++..|+.||..++..
T Consensus 247 ~ll~~L~~~~L--~~~~~r~aA~dcL~eIv~k 276 (1073)
T 3gjx_A 247 KLISTLIYKFL--NVPMFRNVSLKCLTEIAGV 276 (1073)
T ss_dssp SHHHHHHHHTS--SSHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHhc--CChHHHHHHHHHHHHHHhc
Confidence 899988 4666 4667999999999999874
No 110
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=96.68 E-value=0.0008 Score=57.22 Aligned_cols=165 Identities=16% Similarity=0.177 Sum_probs=114.9
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHH
Q 014945 75 AMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVI 154 (415)
Q Consensus 75 ~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~ 154 (415)
.+..+++++++.++..++..+ . .+.|..++++++ +.++..++..+ .
T Consensus 78 ~l~~L~~D~~~~VR~~aA~~L----~---------------~~~L~~ll~D~d-~~VR~~aA~~l---~----------- 123 (244)
T 1lrv_A 78 ALTPLIRDSDEVVRRAVAYRL----P---------------REQLSALMFDED-REVRITVADRL---P----------- 123 (244)
T ss_dssp GGGGGTTCSSHHHHHHHHTTS----C---------------SGGGGGTTTCSC-HHHHHHHHHHS---C-----------
T ss_pred HHHHHccCcCHHHHHHHHHHC----C---------------HHHHHHHHcCCC-HHHHHHHHHhC---C-----------
Confidence 456667788999999888531 1 134677888888 99999988843 1
Q ss_pred hCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCC
Q 014945 155 DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQP 234 (415)
Q Consensus 155 ~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~ 234 (415)
.+.+..++.+++..|+..++.. +. + + ++..+.++++..++..++..+ .
T Consensus 124 ----~~~L~~L~~D~d~~VR~~aA~~---l~---~------------~-~l~~l~~D~d~~VR~~aa~~l---~------ 171 (244)
T 1lrv_A 124 ----LEQLEQMAADRDYLVRAYVVQR---IP---P------------G-RLFRFMRDEDRQVRKLVAKRL---P------ 171 (244)
T ss_dssp ----TGGGGGGTTCSSHHHHHHHHHH---SC---G------------G-GGGGTTTCSCHHHHHHHHHHS---C------
T ss_pred ----HHHHHHHHcCCCHHHHHHHHHh---cC---H------------H-HHHHHHcCCCHHHHHHHHHcC---C------
Confidence 1235567888999999988873 21 1 1 222333788899998888751 1
Q ss_pred chhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCC
Q 014945 235 LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGD 314 (415)
Q Consensus 235 ~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~ 314 (415)
-+.+..+++++++.|+..++..+ ..+.|..++.++++.|+..+...++
T Consensus 172 --------~~ll~~ll~D~d~~VR~aaa~~l------------------~~~~L~~Ll~D~d~~VR~~aa~~l~------ 219 (244)
T 1lrv_A 172 --------EESLGLMTQDPEPEVRRIVASRL------------------RGDDLLELLHDPDWTVRLAAVEHAS------ 219 (244)
T ss_dssp --------GGGGGGSTTCSSHHHHHHHHHHC------------------CGGGGGGGGGCSSHHHHHHHHHHSC------
T ss_pred --------HHHHHHHHcCCCHHHHHHHHHhC------------------CHHHHHHHHcCCCHHHHHHHHHcCC------
Confidence 13455678899999999988652 1256788889999999999988764
Q ss_pred hHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHH
Q 014945 315 DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTIS 351 (415)
Q Consensus 315 ~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~ 351 (415)
.+.|..+ .++ ++.||..+...|+
T Consensus 220 ------------~~~L~~L-~D~-~~~VR~aa~~~L~ 242 (244)
T 1lrv_A 220 ------------LEALREL-DEP-DPEVRLAIAGRLG 242 (244)
T ss_dssp ------------HHHHHHC-CCC-CHHHHHHHHCCC-
T ss_pred ------------HHHHHHc-cCC-CHHHHHHHHHHhC
Confidence 2345555 777 8999998876543
No 111
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=96.62 E-value=0.054 Score=45.37 Aligned_cols=151 Identities=13% Similarity=0.141 Sum_probs=104.9
Q ss_pred ChhHHHHHHHHHHHhccCChHHHHHHHHc-CcHHHHHHh-------cCCCC--h--h-hHHHHHHHHHHhhcCChHHHHH
Q 014945 254 DDEVLTDACWALSYLSDGTNDKIQAVIEA-GVCPRLVEL-------LRHPS--P--S-VLIPALRTVGNIVTGDDMQTQC 320 (415)
Q Consensus 254 d~~v~~~a~~~l~~l~~~~~~~~~~~~~~-~~i~~L~~l-------L~~~~--~--~-v~~~a~~~l~nl~~~~~~~~~~ 320 (415)
+++-++.|+.-|+.=-+..++..-.+..+ |.+..|++- ++.+. . . -...|+..+..++.+ ++.+..
T Consensus 14 ~p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAsh-petr~~ 92 (268)
T 2fv2_A 14 SPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASH-PETRSA 92 (268)
T ss_dssp STTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHHC-TTTHHH
T ss_pred CchhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHcC-cchhhH
Confidence 44457777666665444434433333333 655555433 22222 1 1 223455566667764 557778
Q ss_pred HHHCCChHHHHHHhcCCC----ccchHHHHHHHHHHHhc-CCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHH
Q 014945 321 IINHQALPCLLDLLTQNY----KKSIKKEACWTISNITA-GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNA 395 (415)
Q Consensus 321 ~~~~~~l~~L~~ll~~~~----~~~v~~~a~~~l~nl~~-~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl 395 (415)
++++++.-.|..+|+... ...+|-.+..+++.+.. ++++.+..+++.+++|..++.|+.++.-.+..|...+..+
T Consensus 93 Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKI 172 (268)
T 2fv2_A 93 FLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKI 172 (268)
T ss_dssp HHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 999999889999997652 24688899999999997 7899999999999999999999999999999999999998
Q ss_pred hCCCCHHHHHHH
Q 014945 396 TSGGSNEQIKYK 407 (415)
Q Consensus 396 ~~~~~~~~~~~l 407 (415)
..+ ..-+.|+
T Consensus 173 L~d--d~GL~Yi 182 (268)
T 2fv2_A 173 LLD--DTGLAYI 182 (268)
T ss_dssp HHS--HHHHHHH
T ss_pred hcc--chhHHHH
Confidence 854 4444554
No 112
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=96.55 E-value=0.056 Score=44.91 Aligned_cols=140 Identities=14% Similarity=0.093 Sum_probs=101.3
Q ss_pred hchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHH-hcCCCChhhHHHHHHHHHHhhc-CChHH
Q 014945 240 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVE-LLRHPSPSVLIPALRTVGNIVT-GDDMQ 317 (415)
Q Consensus 240 ~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~-lL~~~~~~v~~~a~~~l~nl~~-~~~~~ 317 (415)
...++....+.+++..+++..|+.+|+.+ .... .+++.+.. +-.++++.|+..+..+++.++. ..++
T Consensus 70 ~~~~~la~~L~~~~~deVR~~Av~lLg~~-~~~~---------~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe- 138 (240)
T 3l9t_A 70 EYIKKLAFLAYQSDVYQVRMYAVFLFGYL-SKDK---------EILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK- 138 (240)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHT-TTSH---------HHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT-
T ss_pred HHHHHHHHHHHhCcchHHHHHHHHHHHhc-cCcH---------HHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH-
Confidence 34555666667778789999999999887 3111 14566666 5567889999999999999885 3332
Q ss_pred HHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhc-----CCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHH
Q 014945 318 TQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA-----GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAI 392 (415)
Q Consensus 318 ~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~-----~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL 392 (415)
..++.+.....++ +..||+.|...+.-.+. .+++. +++.|-.+..+++.-||+...|+|
T Consensus 139 -------~~l~~~~~W~~d~-n~~VRR~Ase~~rpW~~~~~~k~dp~~--------ll~iL~~L~~D~s~yVrKSVan~L 202 (240)
T 3l9t_A 139 -------KALPIIDEWLKSS-NLHTRRAATEGLRIWTNRPYFKENPNE--------AIRRIADLKEDVSEYVRKSVGNAL 202 (240)
T ss_dssp -------TTHHHHHHHHHCS-SHHHHHHHHHHTCSGGGSTTTTTCHHH--------HHHHHHTTTTCSCHHHHHHHHHHH
T ss_pred -------HHHHHHHHHhcCC-CHHHHHHHHHhhHHHhccchhhcCHHH--------HHHHHHHhcCChHHHHHHHHHHHH
Confidence 2567888999999 99999998877643222 23332 456666677788899999999999
Q ss_pred HHHhCCCCHHHHHHH
Q 014945 393 SNATSGGSNEQIKYK 407 (415)
Q Consensus 393 ~nl~~~~~~~~~~~l 407 (415)
..++.. .++.+..+
T Consensus 203 rD~SK~-~Pd~V~~~ 216 (240)
T 3l9t_A 203 RDISKK-FPDLVKIE 216 (240)
T ss_dssp HHHHTT-CHHHHHHH
T ss_pred HHHhhh-CHHHHHHH
Confidence 999987 56666555
No 113
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=96.53 E-value=0.8 Score=48.59 Aligned_cols=300 Identities=9% Similarity=0.039 Sum_probs=171.0
Q ss_pred cHHHHHHhhcCC--CHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhc-CCCChHHHHHHHHHHHHHhCC---
Q 014945 72 SLPAMVAGVWSD--DRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLS-RDDFPQLQFEAAWALTNIASG--- 145 (415)
Q Consensus 72 ~i~~l~~~l~~~--~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~~i~~~a~~~L~~l~~~--- 145 (415)
.+..+++.+.+. ++..+..|-..|..+-.. + +....+...|. .+.++.+|..|+..|.+....
T Consensus 12 ~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~---p--------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~ 80 (1204)
T 3a6p_A 12 QLVKAVTVMMDPNSTQRYRLEALKFCEEFKEK---C--------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWN 80 (1204)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHH---C--------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGG
T ss_pred HHHHHHHHHhCCCCChHHHHHHHHHHHHHHhC---c--------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcc
Confidence 355555555544 677788888888776322 1 12333443332 333389999999999987642
Q ss_pred --CchhhHHHHhCCChHHHHHhhCC---CCHHHHHHHHHHHHHhcCCC-chhHHHHHhcCChHHHHHHhccchhHhHHHH
Q 014945 146 --TSENTRVVIDHGAVPIFVRLLSS---PTDDVREQAVWALGNVAGDS-PKCRDLVLSNGALMPLLAQFNEHAKLSMLRN 219 (415)
Q Consensus 146 --~~~~~~~~~~~g~i~~L~~ll~~---~~~~v~~~a~~~L~nl~~~~-~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~ 219 (415)
+++.+ ..++..++..+...-.. ....++.+.+.++..|+... |. -..+.++.++..+.. +......
T Consensus 81 ~l~~e~k-~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~-----~Wp~ll~~L~~~~~~--~~~~~e~ 152 (1204)
T 3a6p_A 81 GMSRLEK-VYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQ-----HWPDMLIELDTLSKQ--GETQTEL 152 (1204)
T ss_dssp GSCHHHH-HHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTT-----TCTTHHHHHHHHHHT--CHHHHHH
T ss_pred cCCHHHH-HHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcc-----cchHHHHHHHHHhcC--CHHHHHH
Confidence 22333 33333445555443221 45788999999999887432 11 123467778887733 3345677
Q ss_pred HHHHHHHhhhCC-C--CCchh-------hh----hchHHHHHHhhcC-------------------CChhHHHHHHHHHH
Q 014945 220 ATWTLSNFCRGK-P--QPLFE-------QT----RPALPALERLIHS-------------------NDDEVLTDACWALS 266 (415)
Q Consensus 220 a~~~l~~l~~~~-~--~~~~~-------~~----~~~l~~l~~lL~~-------------------~d~~v~~~a~~~l~ 266 (415)
++.+|..+++.. . ..... .+ ..+++.+..++.. .+..+...++.++.
T Consensus 153 ~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~ 232 (1204)
T 3a6p_A 153 VMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLA 232 (1204)
T ss_dssp HHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHH
Confidence 788888877542 1 11000 01 1333444444432 12446777888887
Q ss_pred HhccCChHHHHHHHHcC--cHHHHHHhcCCCChhhHHHHHHHHHHhhcCC--hHHHHHHHHC---CChHHHHHHhc----
Q 014945 267 YLSDGTNDKIQAVIEAG--VCPRLVELLRHPSPSVLIPALRTVGNIVTGD--DMQTQCIINH---QALPCLLDLLT---- 335 (415)
Q Consensus 267 ~l~~~~~~~~~~~~~~~--~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~--~~~~~~~~~~---~~l~~L~~ll~---- 335 (415)
+....-+- ..+.+.. +++.+..++. ++.++..|+.+|..++... +.....++.. ..+..++....
T Consensus 233 ~~l~Wi~~--~~i~~~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~ 308 (1204)
T 3a6p_A 233 GYIDWVSM--SHITAENCKLLEILCLLLN--EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADG 308 (1204)
T ss_dssp TTTTTSCH--HHHHTTTSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCC
T ss_pred HHHhccCH--HHHHhccchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCC
Confidence 76655432 2233433 6777777765 4678999999999999754 2222222221 11234444432
Q ss_pred ---CCCccchHHHHHHHHHHHhcCCHHHHHHHHH-----------cCCHHHHHHHhccCCHHHHHHHHHHHHHHhCC
Q 014945 336 ---QNYKKSIKKEACWTISNITAGNVNQIQAIIE-----------AGIIGPLVNLLLNAEFEIKKEAAWAISNATSG 398 (415)
Q Consensus 336 ---~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~-----------~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~ 398 (415)
+..+..+.+..+..+..+.. ....++. .++++.++.++.+++..+-..++.....+...
T Consensus 309 ~~~~e~d~e~~k~l~~ll~~lg~----~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~ 381 (1204)
T 3a6p_A 309 GGLVEKHYVFLKRLCQVLCALGN----QLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRH 381 (1204)
T ss_dssp CSCCHHHHHHHHHHHHHHHHHHH----HHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSC
T ss_pred CCCccHHHHHHHHHHHHHHHHHH----HHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhc
Confidence 11145667777777777662 1222222 13578888888888888888888777766654
No 114
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=96.48 E-value=0.077 Score=44.46 Aligned_cols=137 Identities=16% Similarity=0.203 Sum_probs=100.6
Q ss_pred HHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCC-----hhhHHHHHHHHHHhhcCC-hHHHHHHHHCCChHHHHH
Q 014945 259 TDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPS-----PSVLIPALRTVGNIVTGD-DMQTQCIINHQALPCLLD 332 (415)
Q Consensus 259 ~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~-----~~v~~~a~~~l~nl~~~~-~~~~~~~~~~~~l~~L~~ 332 (415)
.+|+..+..++.+++.+ ..++++++.-.|..+|+..+ +.+|-.+++++|.++..+ ++....+++.+++|..++
T Consensus 74 cnaLaLlQcvAshpetr-~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLr 152 (268)
T 2fv2_A 74 CNALALLQCVASHPETR-SAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLR 152 (268)
T ss_dssp HHHHHHHHHHHHCTTTH-HHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHcCcchh-hHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHH
Confidence 55666667777776655 56889999888999986543 478899999999998654 467788889999999999
Q ss_pred HhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHH--------cCCHHHHHHH-hccCCHHHHHHHHHHHHHHhCC
Q 014945 333 LLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE--------AGIIGPLVNL-LLNAEFEIKKEAAWAISNATSG 398 (415)
Q Consensus 333 ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~--------~~~i~~L~~~-l~~~~~~v~~~a~~aL~nl~~~ 398 (415)
.++.+ +.--|.-|.+++..|..+ .....+++. ..++..++.- .+.+++++.+....+-..++.+
T Consensus 153 ime~G-selSKtvAtfIlqKIL~d-d~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn 225 (268)
T 2fv2_A 153 IMESG-SELSKTVATFILQKILLD-DTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDN 225 (268)
T ss_dssp HHHHS-CHHHHHHHHHHHHHHHHS-HHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTS
T ss_pred HHhhc-cHHHHHHHHHHHHHHhcc-chhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcC
Confidence 99999 888888899998877653 222333321 1133333333 3457888989998888888865
No 115
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=96.46 E-value=0.21 Score=46.01 Aligned_cols=124 Identities=17% Similarity=0.131 Sum_probs=95.1
Q ss_pred CCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHH
Q 014945 168 SPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALE 247 (415)
Q Consensus 168 ~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~ 247 (415)
.++......|...|..+..+-|...+. ++..+++++ .+.+..++..|+..|..+|.+ ..+..+...|+
T Consensus 39 kg~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLc-EDed~~IR~qaik~Lp~~ck~------~~i~kiaDvL~ 106 (507)
T 3u0r_A 39 KGGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLC-EDEDVSIRRQAIKELPQFATG------ENLPRVADILT 106 (507)
T ss_dssp GSCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHH-TCSSHHHHHHHHHHGGGGCCT------TCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHH-hcccHHHHHHHHHhhHHHhhh------hhhhhHHHHHH
Confidence 357889999999999999988887665 577899999 888999999999999999976 33678889999
Q ss_pred HhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhh
Q 014945 248 RLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV 311 (415)
Q Consensus 248 ~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~ 311 (415)
++|+.+++.-...+-++|..+...++.. .+..+...+...++.+|+.++..|..-.
T Consensus 107 QlLqtdd~~E~~~V~~sL~sllk~Dpk~--------tl~~lf~~i~~~~e~~Rer~lkFi~~kl 162 (507)
T 3u0r_A 107 QLLQTDDSAEFNLVNNALLSIFKMDAKG--------TLGGLFSQILQGEDIVRERAIKFLSTKL 162 (507)
T ss_dssp HHTTCCCHHHHHHHHHHHHHHHHHCHHH--------HHHHHHHHHHHSCHHHHHHHHHHHHHHG
T ss_pred HHHhccchHHHHHHHHHHHHHHhcChHH--------HHHHHHHHHcccchHHHHHHHHHHHHHH
Confidence 9999998877777777777766544422 2344444444457888988888876444
No 116
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=96.39 E-value=0.54 Score=43.34 Aligned_cols=245 Identities=12% Similarity=0.040 Sum_probs=146.5
Q ss_pred hHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHh
Q 014945 129 PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQF 208 (415)
Q Consensus 129 ~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l 208 (415)
+..+..|+..+......-|+..+. ++..++.+..+++..||.+|+..|..+|.+ . .... +...|+++|
T Consensus 42 ~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~-~i~k-----iaDvL~QlL 109 (507)
T 3u0r_A 42 TKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLCEDEDVSIRRQAIKELPQFATG-E-NLPR-----VADILTQLL 109 (507)
T ss_dssp HHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-T-CHHH-----HHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhhHHHhhh-h-hhhh-----HHHHHHHHH
Confidence 799999999999998877777655 577899999999999999999999999988 2 2222 456788888
Q ss_pred ccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccC-ChHHHHHHHHcCcHHH
Q 014945 209 NEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDG-TNDKIQAVIEAGVCPR 287 (415)
Q Consensus 209 ~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~-~~~~~~~~~~~~~i~~ 287 (415)
+..+..-...+-++|..+...++ .+.+..+...+..+++.+++.++..|..-... ..+....-.+.-++..
T Consensus 110 -qtdd~~E~~~V~~sL~sllk~Dp-------k~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~ 181 (507)
T 3u0r_A 110 -QTDDSAEFNLVNNALLSIFKMDA-------KGTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTE 181 (507)
T ss_dssp -TCCCHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHH
T ss_pred -hccchHHHHHHHHHHHHHHhcCh-------HHHHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhccHHHHHHHHHH
Confidence 55555556666666666665432 34455555555556888998888777543211 1111111222234566
Q ss_pred HHHhcCCCChhhHHHHHHHHHHhhcCCh-HHHHHHHHCCChHHHHHHhc------CCCccchHHHHHHHHH----HHhc-
Q 014945 288 LVELLRHPSPSVLIPALRTVGNIVTGDD-MQTQCIINHQALPCLLDLLT------QNYKKSIKKEACWTIS----NITA- 355 (415)
Q Consensus 288 L~~lL~~~~~~v~~~a~~~l~nl~~~~~-~~~~~~~~~~~l~~L~~ll~------~~~~~~v~~~a~~~l~----nl~~- 355 (415)
+...|.+-...--...+.+|+.+-.... ...+.+ ++.+..... .. ++........++. -++.
T Consensus 182 ikK~L~DVT~~EF~L~m~lL~~lkl~~t~~g~qeL-----v~ii~eQa~L~~~f~~s-D~e~vdRlI~C~~~ALP~FS~~ 255 (507)
T 3u0r_A 182 SKKVLEDVTGEEFVLFMKILSGLKSLQTVSGRQQL-----VELVAEQADLEQTFNPS-DPDCVDRLLQCTRQAVPLFSKN 255 (507)
T ss_dssp HHHHTTSCCHHHHHHHHHHHHTSGGGSSHHHHHHH-----HHHHHHHHTTTSCCCSS-CHHHHHHHHHHHHHHGGGCBTT
T ss_pred HHHHhccccHHHHHHHHHHHHhcccccCchHHHHH-----HHHHHHHHhccCCCCCc-CHHHHHHHHHHHHHHHHHhccC
Confidence 7777765554444455556655543322 222222 333333321 12 3333333333332 2222
Q ss_pred -CCHHHHHHHHHcCCHHHHHHHhcc-CCHHHHHHHHHHHHHHhCCCC
Q 014945 356 -GNVNQIQAIIEAGIIGPLVNLLLN-AEFEIKKEAAWAISNATSGGS 400 (415)
Q Consensus 356 -~~~~~~~~l~~~~~i~~L~~~l~~-~~~~v~~~a~~aL~nl~~~~~ 400 (415)
.+.....++++. ++|.+-.+-.. +.++.+...+.++..++..++
T Consensus 256 v~StkFv~y~~~k-IlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~ 301 (507)
T 3u0r_A 256 VHSTRFVTYFCEQ-VLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCG 301 (507)
T ss_dssp BCCHHHHHHHHHH-TGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCC
T ss_pred CChHHHHHHHHHh-hccchhhccccccchHHHHHHHHHHHHHccCCC
Confidence 355656666665 77755443322 223477788888888887665
No 117
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=96.28 E-value=0.034 Score=52.17 Aligned_cols=187 Identities=19% Similarity=0.167 Sum_probs=116.5
Q ss_pred HHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHh
Q 014945 86 NIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRL 165 (415)
Q Consensus 86 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~l 165 (415)
.++..|+++|..+ ..- ++. ..++..++..+..+. .+++..++-.|..+.. .... -.++++.++..
T Consensus 243 PVRETaAQtLGaL-~hL-p~e------~~IL~qLV~~l~~~~-WEVRHGGLLGLKYL~D----LL~~--Ld~Vv~aVL~G 307 (800)
T 3oc3_A 243 PVRDAAAYLLSRI-YPL-IGP------NDIIEQLVGFLDSGD-WQVQFSGLIALGYLKE----FVED--KDGLCRKLVSL 307 (800)
T ss_dssp HHHHHHHHHHHHH-TTT-SCS------CCHHHHHTTGGGCSC-HHHHHHHHHHHHHTGG----GCCC--HHHHHHHHHHH
T ss_pred ehHHHHHHHHHHH-HhC-Chh------HHHHHHHHhhcCCCC-eeehhhhHHHHHHHHH----HHHH--HHHHHHHHHhh
Confidence 4566666666655 211 111 234555555556666 8999999988888711 1111 13568888899
Q ss_pred hCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchh-HhHHHHHHHHHHHhhhCCCCCchhhhhchHH
Q 014945 166 LSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAK-LSMLRNATWTLSNFCRGKPQPLFEQTRPALP 244 (415)
Q Consensus 166 l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~ 244 (415)
|.+.+++|+..|+.+|.-++ .+..-+. .+..+-..|.+-++ ......++..|+.|+..++.. ......+|
T Consensus 308 L~D~DDDVRAVAAetLiPIA--~p~~l~~-----LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a--~~dp~LVP 378 (800)
T 3oc3_A 308 LSSPDEDIKLLSAELLCHFP--ITDSLDL-----VLEKCWKNIESEELISVSKTSNLSLLTKIYRENPEL--SIPPERLK 378 (800)
T ss_dssp TTCSSHHHHHHHHHHHTTSC--CSSTHHH-----HHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTC--CCCSGGGG
T ss_pred cCCcccHHHHHHHHHhhhhc--chhhHHH-----HHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCccc--ccChHHHH
Confidence 99999999999999999998 2221122 23344445532222 223455666777777765321 11238899
Q ss_pred HHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHH-hcCCCChhhHHHHHHHH
Q 014945 245 ALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVE-LLRHPSPSVLIPALRTV 307 (415)
Q Consensus 245 ~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~-lL~~~~~~v~~~a~~~l 307 (415)
.|.+++.+.-..||..++.++..+. .... +..+.+ +|-.++++++..+..+-
T Consensus 379 RL~PFLRHtITSVR~AVL~TL~tfL--~~~~---------LRLIFQNILLE~neeIl~lS~~VW 431 (800)
T 3oc3_A 379 DIFPCFTSPVPEVRTSILNMVKNLS--EESI---------DFLVAEVVLIEEKDEIREMAIKLL 431 (800)
T ss_dssp GTGGGGTCSSHHHHHHHHHHTTTCC--CHHH---------HHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred HHHhhhcCCcHHHHHHHHHHHHHHH--hhhH---------HHHHHHHHHhCCcHHHHHHHHHHH
Confidence 9999999999999999999998887 2222 222222 23456666776666555
No 118
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=95.90 E-value=0.43 Score=41.77 Aligned_cols=173 Identities=12% Similarity=0.055 Sum_probs=105.0
Q ss_pred hHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCC----ChHHHHHhhCC-CCHHHHHHHHHHHHHhcCCCch
Q 014945 116 VPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHG----AVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPK 190 (415)
Q Consensus 116 i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g----~i~~L~~ll~~-~~~~v~~~a~~~L~nl~~~~~~ 190 (415)
+..+.++++.+ .+.+.-++.++.-++.+ +.....+.+.. ++..+...+.+ ..+..+-.++++++|+.....
T Consensus 105 l~~l~kil~WP--~~~~fPvLDLlRl~~l~-p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~- 180 (304)
T 3ebb_A 105 LQILWKAINCP--EDIVFPALDILRLSIKH-PSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQA- 180 (304)
T ss_dssp HHHHHHHHTSC--TTTCHHHHHHHHHHTTS-HHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHH-
T ss_pred HHHHHHHHcCC--HHhHHHHHHHHHHHHcC-ccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCch-
Confidence 56666666444 35666677777665553 54444443322 22334444443 356678899999999987766
Q ss_pred hHHHHHhcCChHHHHHHhc---cchhHhHHHHHHHHHHHhhhCC-CCCchhhhhchHHHHHHhhcC-CChhHHHHHHHHH
Q 014945 191 CRDLVLSNGALMPLLAQFN---EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHS-NDDEVLTDACWAL 265 (415)
Q Consensus 191 ~~~~~~~~g~i~~L~~~l~---~~~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~l~~l~~lL~~-~d~~v~~~a~~~l 265 (415)
.++.+.. ....++..+. .+.+..++..++.++.|++... ..........++..+..+++. .|.+....++-++
T Consensus 181 g~~~l~~--~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvAL 258 (304)
T 3ebb_A 181 GQKLMMS--QRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVAL 258 (304)
T ss_dssp HHHHHHH--THHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred hHHHHHH--HHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 5566554 2344444432 3457778888888888888653 122223334455556666643 5889999999999
Q ss_pred HHhccCChHHHHHHHHcCcHHHHHHhcCC
Q 014945 266 SYLSDGTNDKIQAVIEAGVCPRLVELLRH 294 (415)
Q Consensus 266 ~~l~~~~~~~~~~~~~~~~i~~L~~lL~~ 294 (415)
+++...+.+..+....-|+-..+-...+.
T Consensus 259 GtL~~~~~~~~~lak~l~~~~~v~~~~~~ 287 (304)
T 3ebb_A 259 GTLISDDSNAVQLAKSLGVDSQIKKYSSV 287 (304)
T ss_dssp HHHHTTCHHHHHHHHHTTHHHHGGGGGGC
T ss_pred HHHHhCChhHHHHHHHcCHHHHHHHHHhC
Confidence 99998766554434344555555555544
No 119
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=95.77 E-value=1.9 Score=44.99 Aligned_cols=172 Identities=13% Similarity=0.109 Sum_probs=110.7
Q ss_pred hHHHHHHhccc---hhHhHHHHHHHHHHHhhh----CCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCCh
Q 014945 201 LMPLLAQFNEH---AKLSMLRNATWTLSNFCR----GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTN 273 (415)
Q Consensus 201 i~~L~~~l~~~---~~~~~~~~a~~~l~~l~~----~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~ 273 (415)
+..+..++... .++.+...++.+++.+.. ..+......+..+...+.+.+...+.+-..-++.+|+|+...
T Consensus 393 l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p-- 470 (1056)
T 1lsh_A 393 LSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQP-- 470 (1056)
T ss_dssp HHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG--
T ss_pred HHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCh--
Confidence 34455555322 245566666666666653 333333344556666677777777888888999999998642
Q ss_pred HHHHHHHHcCcHHHHHHhcCC-------CChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhc-CCCccchHHH
Q 014945 274 DKIQAVIEAGVCPRLVELLRH-------PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLT-QNYKKSIKKE 345 (415)
Q Consensus 274 ~~~~~~~~~~~i~~L~~lL~~-------~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~-~~~~~~v~~~ 345 (415)
..++.|..++.. ....++..|+++|.+++...+...+ +.++++.. ..+++++|..
T Consensus 471 ---------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v~--------~il~~i~~n~~e~~EvRia 533 (1056)
T 1lsh_A 471 ---------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQ--------EIVLPIFLNVAIKSELRIR 533 (1056)
T ss_dssp ---------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHH--------HHHHHHHHCTTSCHHHHHH
T ss_pred ---------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHHH--------HHHHHHhcCCCCChHHHHH
Confidence 235666666632 1346888999999999976654443 45777663 3337899999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhcc-CCHHHHHHHHHHHHHHhCCCCH
Q 014945 346 ACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN-AEFEIKKEAAWAISNATSGGSN 401 (415)
Q Consensus 346 a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~-~~~~v~~~a~~aL~nl~~~~~~ 401 (415)
|+..|..-. -+.. .+..+...+.. .+.+|.......|.+++....+
T Consensus 534 A~~~Lm~t~-P~~~---------~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P 580 (1056)
T 1lsh_A 534 SCIVFFESK-PSVA---------LVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNP 580 (1056)
T ss_dssp HHHHHHHTC-CCHH---------HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHC-cCHH---------HHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCc
Confidence 998885322 2233 24445555554 6788888888888888887654
No 120
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=95.64 E-value=0.52 Score=39.55 Aligned_cols=139 Identities=12% Similarity=0.140 Sum_probs=84.5
Q ss_pred HHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcC----C------CChHHHHHHHHHHHHHhCCCchhhHHHHh-CCCh
Q 014945 91 ATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSR----D------DFPQLQFEAAWALTNIASGTSENTRVVID-HGAV 159 (415)
Q Consensus 91 a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~----~------~~~~i~~~a~~~L~~l~~~~~~~~~~~~~-~g~i 159 (415)
.+..|+..+..++..-++.+ ..+++..|+.+|.. . .+...+..++.||..+... ......+.. .+.+
T Consensus 21 ~L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~-~~G~~~vl~~~~~i 98 (233)
T 2f31_A 21 CLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNN-KFGIKTMLETEEGI 98 (233)
T ss_dssp HHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSS-HHHHHHHHTSSSHH
T ss_pred HHHHHhHhHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCC-hHHHHHHHcCcHHH
Confidence 34444444433222223445 35667777766642 1 1257788999999999874 455555555 5788
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhcCCCc-hh-HHHHHh----------cCChHHHHHHhccchhHhHHHHHHHHHHHh
Q 014945 160 PIFVRLLSSPTDDVREQAVWALGNVAGDSP-KC-RDLVLS----------NGALMPLLAQFNEHAKLSMLRNATWTLSNF 227 (415)
Q Consensus 160 ~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~-~~-~~~~~~----------~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l 227 (415)
..+...|.++++.++..++..|+-+|..+. .. ...+++ ..-..+++..+....+.+....++..+-.+
T Consensus 99 ~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~l 178 (233)
T 2f31_A 99 LLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINAL 178 (233)
T ss_dssp HHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence 999999999999999999999998886543 12 233322 223445566554344555555555555555
Q ss_pred hhCC
Q 014945 228 CRGK 231 (415)
Q Consensus 228 ~~~~ 231 (415)
....
T Consensus 179 i~~~ 182 (233)
T 2f31_A 179 ITPA 182 (233)
T ss_dssp HTTC
T ss_pred HCCC
Confidence 5543
No 121
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=95.52 E-value=0.8 Score=41.62 Aligned_cols=156 Identities=12% Similarity=0.118 Sum_probs=101.3
Q ss_pred HHHHhhcCCC-HHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcC----------CCChHHHHHHHHHHHHHh
Q 014945 75 AMVAGVWSDD-RNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSR----------DDFPQLQFEAAWALTNIA 143 (415)
Q Consensus 75 ~l~~~l~~~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~----------~~~~~i~~~a~~~L~~l~ 143 (415)
.+++.|.+.- ..-....+..|+..+...+..-++.++ .+++..|+.+|.. ..+...+..++.||..+.
T Consensus 70 ~yi~~L~~~~~~~kl~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalm 148 (383)
T 3eg5_B 70 MYIQELRSGLRDMHLLSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM 148 (383)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHh
Confidence 4555555442 222234566666665544233345666 5678888888752 112578899999999998
Q ss_pred CCCchhhHHHHh-CCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCc-hh-HHHHH----------hcCChHHHHHHhcc
Q 014945 144 SGTSENTRVVID-HGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP-KC-RDLVL----------SNGALMPLLAQFNE 210 (415)
Q Consensus 144 ~~~~~~~~~~~~-~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~-~~-~~~~~----------~~g~i~~L~~~l~~ 210 (415)
-. ......++. ...+..|...+.++++.++..++..|+-+|..+. .. ...++ +..-...++..+..
T Consensus 149 N~-~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~ 227 (383)
T 3eg5_B 149 NN-KFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKS 227 (383)
T ss_dssp SS-HHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTST
T ss_pred cc-hhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHc
Confidence 74 445555555 5789999999999999999999999999986553 21 23332 23346677777754
Q ss_pred chhHhHHHHHHHHHHHhhhCCC
Q 014945 211 HAKLSMLRNATWTLSNFCRGKP 232 (415)
Q Consensus 211 ~~~~~~~~~a~~~l~~l~~~~~ 232 (415)
..+.+....++..+-.+....+
T Consensus 228 ~~~~e~~~~~m~lIN~li~~~~ 249 (383)
T 3eg5_B 228 GTSIALKVGCLQLINALITPAE 249 (383)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCC
T ss_pred cCcHHHHHHHHHHHHHHHcCCC
Confidence 4566777766666666666543
No 122
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=95.10 E-value=0.26 Score=43.29 Aligned_cols=129 Identities=14% Similarity=0.154 Sum_probs=98.7
Q ss_pred HHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHH-CCChHHHHHHhcCCCccchH
Q 014945 265 LSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIIN-HQALPCLLDLLTQNYKKSIK 343 (415)
Q Consensus 265 l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~-~~~l~~L~~ll~~~~~~~v~ 343 (415)
+.++.-++.+.++-+++.+++..+......++.++....+..|-.++....-. +.. ...+|.++..+.-..++++.
T Consensus 266 LL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~---~t~L~e~LPFi~~~i~~h~eDdvv 342 (619)
T 3c2g_A 266 LLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALA---KTPLENILPFLLRLIEIHPDDEVI 342 (619)
T ss_dssp HHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGG---TSCCTTHHHHHHHHHHHCCCHHHH
T ss_pred HHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHh---hccccccchHHHHHhccCCCcceE
Confidence 34555567778889999999999999999999999999999998876543211 111 15678888877544488999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhcc-------CCHHHHHHHHHHHHHHh
Q 014945 344 KEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN-------AEFEIKKEAAWAISNAT 396 (415)
Q Consensus 344 ~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~-------~~~~v~~~a~~aL~nl~ 396 (415)
......|+|+.++.....+..+.+|.++.|...+.. .+..-++.||..++|..
T Consensus 343 YSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~L 402 (619)
T 3c2g_A 343 YSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCL 402 (619)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHH
T ss_pred EecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHH
Confidence 999999999999988877788899999999987643 23345666777777765
No 123
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=95.03 E-value=0.22 Score=43.61 Aligned_cols=110 Identities=13% Similarity=0.072 Sum_probs=71.6
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhC--CChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhH--H
Q 014945 118 RFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDH--GAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR--D 193 (415)
Q Consensus 118 ~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~--g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~--~ 193 (415)
.+...+.+...+..+..++++++|+... +..+..+... .+++.+...+.+++..++..+..++.|++...-..+ +
T Consensus 151 ~l~~~~~~~~~p~n~ml~lR~l~NlF~~-~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~ 229 (304)
T 3ebb_A 151 HLINLLNPKGKPANQLLALRTFCNCFVG-QAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIE 229 (304)
T ss_dssp HHHHTTCTTSCHHHHHHHHHHHHHGGGS-HHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHH
T ss_pred HHHHhcCCCCChHHHHHHHHHHHHccCC-chhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCch
Confidence 4445555443467799999999999985 6666666542 345555556666789999999999999984211000 1
Q ss_pred HHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhC
Q 014945 194 LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 230 (415)
Q Consensus 194 ~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~ 230 (415)
.... .+..+..++....+.+....++-++.+|...
T Consensus 230 ~~~~--ll~~l~~il~~~~d~EalyR~LvALGtL~~~ 264 (304)
T 3ebb_A 230 GKAQ--CLSLISTILEVVQDLEATFRLLVALGTLISD 264 (304)
T ss_dssp HHHH--HHHHHHHHHTTCCCHHHHHHHHHHHHHHHTT
T ss_pred HHHH--HHHHHHHHHhccCCHHHHHHHHHHHHHHHhC
Confidence 1111 3344445554455778888888888888865
No 124
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=94.91 E-value=1.9 Score=44.98 Aligned_cols=167 Identities=15% Similarity=0.185 Sum_probs=109.9
Q ss_pred ChHHHHHhhCC----CCHHHHHHHHHHHHHhc----CCCchhHHHHHhcCChHHHHHHhc---cchhHhHHHHHHHHHHH
Q 014945 158 AVPIFVRLLSS----PTDDVREQAVWALGNVA----GDSPKCRDLVLSNGALMPLLAQFN---EHAKLSMLRNATWTLSN 226 (415)
Q Consensus 158 ~i~~L~~ll~~----~~~~v~~~a~~~L~nl~----~~~~~~~~~~~~~g~i~~L~~~l~---~~~~~~~~~~a~~~l~~ 226 (415)
.+..+..++.+ .++.+++.++-+++.+. ...+.|.. ..++.+.+.+. ...+..-...++.+|.|
T Consensus 392 ~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~-----~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN 466 (1056)
T 1lsh_A 392 SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPD-----ELLQPLHDLLSQSSDRAKEEEIVLALKALGN 466 (1056)
T ss_dssp HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCG-----GGTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCH-----HHHHHHHHHHHHHHhcCChHHHHHHHHHhhc
Confidence 35556667765 46778888888888875 22222211 12444444442 33456667888899999
Q ss_pred hhhCCCCCchhhhhchHHHHHHhhcC-------CChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhc--CCCCh
Q 014945 227 FCRGKPQPLFEQTRPALPALERLIHS-------NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL--RHPSP 297 (415)
Q Consensus 227 l~~~~~~~~~~~~~~~l~~l~~lL~~-------~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL--~~~~~ 297 (415)
+-.. ..++.|.+++.. ....++..|+++|..+....+...+ +.+++++ ...+.
T Consensus 467 ~g~p----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v~--------~il~~i~~n~~e~~ 528 (1056)
T 1lsh_A 467 AGQP----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQ--------EIVLPIFLNVAIKS 528 (1056)
T ss_dssp HTCG----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHH--------HHHHHHHHCTTSCH
T ss_pred cCCh----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHHH--------HHHHHHhcCCCCCh
Confidence 8742 456777777742 1356889999999999877665543 5567777 44577
Q ss_pred hhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCC
Q 014945 298 SVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN 357 (415)
Q Consensus 298 ~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~ 357 (415)
++|..|+..|-. +.++ . ..+..+...+....+..|.....-.|.+++..+
T Consensus 529 EvRiaA~~~Lm~--t~P~-~-------~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~ 578 (1056)
T 1lsh_A 529 ELRIRSCIVFFE--SKPS-V-------ALVSMVAVRLRREPNLQVASFVYSQMRSLSRSS 578 (1056)
T ss_dssp HHHHHHHHHHHH--TCCC-H-------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHH--HCcC-H-------HHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcC
Confidence 899998877732 2222 1 235667777777557888888888888888743
No 125
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=94.69 E-value=0.62 Score=40.92 Aligned_cols=114 Identities=18% Similarity=0.129 Sum_probs=87.3
Q ss_pred HHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhc-CCCh
Q 014945 177 AVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH-SNDD 255 (415)
Q Consensus 177 a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~-~~d~ 255 (415)
+...|+-+ ..+....+-+....++..+...+ +-++.++.+..+..|...+... ..........+|.+...+. +++.
T Consensus 263 ~FDLL~LL-mHdSnAIDGFVk~DGv~~I~Tvi-nYpN~~l~RaG~KLLLQVSDak-sL~~t~L~e~LPFi~~~i~~h~eD 339 (619)
T 3c2g_A 263 TFDLLGLL-LHDSDAIDGFVRSDGVGAITTVV-QYPNNDLIRAGCKLLLQVSDAK-ALAKTPLENILPFLLRLIEIHPDD 339 (619)
T ss_dssp HHHHHHHH-CCSHHHHHHHHHTTHHHHHHHHT-TSSCHHHHHHHHHHHHHHTTCG-GGGTSCCTTHHHHHHHHHHHCCCH
T ss_pred HHHHHHHH-hcccccccceeecccceeEEEEe-ecCCcHHHHhhhheeeeecchH-HHhhccccccchHHHHHhccCCCc
Confidence 33344444 44444568888899999999998 7778888999999888887553 2222334677888888775 6788
Q ss_pred hHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcC
Q 014945 256 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR 293 (415)
Q Consensus 256 ~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~ 293 (415)
++.......++|...+.....+..+..|++..|-..+.
T Consensus 340 dvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ 377 (619)
T 3c2g_A 340 EVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIIS 377 (619)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred ceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHh
Confidence 99999999999999998888888899999999888763
No 126
>2p8q_B Snurportin-1; heat repeat, IBB-domain, importin, karyopherin, transport; 2.35A {Homo sapiens} PDB: 2q5d_C 3lww_B
Probab=94.58 E-value=0.028 Score=31.84 Aligned_cols=38 Identities=37% Similarity=0.545 Sum_probs=28.1
Q ss_pred HHhhhccC-CCCchHHHHhHHHHHHHHHHHhhhHHHHhhhh
Q 014945 11 VRRSKYKV-AVDAEEGRRRREDNMVEIRKNKREESLLKKRR 50 (415)
Q Consensus 11 ~~~~~~k~-~~~~~~~r~~r~~~~~~lRk~~r~~~~~~~R~ 50 (415)
+|...||+ +...++..++|+ ..+..|++|-+.++..|+
T Consensus 2 PR~sqYK~k~~~~~q~~rRr~--~L~~QK~~R~D~~nhaR~ 40 (40)
T 2p8q_B 2 PRLSQYKSKYSSLEQSERRRR--LLELQKSKRLDYVNHARR 40 (40)
T ss_dssp CCGGGTTCCCCSCSTTHHHHH--HHHHHHHHHHHHHHTTTC
T ss_pred ccHHhhccccchhhHHHHHHH--HHHHHHHHHHHHHHHhcC
Confidence 68899999 455555555454 688999999998887764
No 127
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=94.41 E-value=2 Score=36.38 Aligned_cols=101 Identities=6% Similarity=0.080 Sum_probs=71.3
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHH
Q 014945 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRV 152 (415)
Q Consensus 73 i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~ 152 (415)
+-.+++..+....+.+...+...+.++... ++. +. ..+++.++.+..+++ .++|...+..+...+...++...
T Consensus 17 v~~lln~A~~~~~~~kl~~L~qa~el~~~~-dp~---ll-~~~l~~il~~~~~~~-~~vrk~~~~Fi~e~~~~k~~l~~- 89 (257)
T 3gs3_A 17 VVDWCNELVIASPSTKCELLAKVQETVLGS-CAE---LA-EEFLESVLSLAHDSN-MEVRKQVVAFVEQVCKVKVELLP- 89 (257)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHTTT-TGG---GH-HHHHHHHHGGGGCSC-HHHHHHHHHHHHHHHHHCGGGHH-
T ss_pred HHHHHHHhhhcCcHHHHHHHHHHHHHHHcc-CHh---HH-HHHHHHHHHhccCCh-HHHHHHHHHHHHHHHHHHHHHHH-
Confidence 344455444433368888888888876543 221 11 236788888877776 89999999999888865443332
Q ss_pred HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHh
Q 014945 153 VIDHGAVPIFVRLLSSPTDDVREQAVWALGNV 184 (415)
Q Consensus 153 ~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl 184 (415)
..++.|..++.++++.+...++.+.+++
T Consensus 90 ----~~l~~L~~Ll~d~d~~V~K~~I~~~~~i 117 (257)
T 3gs3_A 90 ----HVINVVSMLLRDNSAQVIKRVIQACGSI 117 (257)
T ss_dssp ----HHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 3577888899988999999999888876
No 128
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=94.15 E-value=3 Score=37.85 Aligned_cols=140 Identities=11% Similarity=0.129 Sum_probs=90.1
Q ss_pred HHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcC----C------CChHHHHHHHHHHHHHhCCCchhhHHHHh-CCCh
Q 014945 91 ATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSR----D------DFPQLQFEAAWALTNIASGTSENTRVVID-HGAV 159 (415)
Q Consensus 91 a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~----~------~~~~i~~~a~~~L~~l~~~~~~~~~~~~~-~g~i 159 (415)
.+..|+..+..++..-++.+. .+++..|+.+|.. . .+...+..++.||..+... ......++. .+++
T Consensus 25 ~L~~L~v~Lrt~~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~-~~Gl~~vl~~~~~i 102 (386)
T 2bnx_A 25 CLESLRVSLNNNPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNN-KFGIKTMLETEEGI 102 (386)
T ss_dssp HHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSS-HHHHHHHHHSSSHH
T ss_pred HHHHHhHHHhcCCcHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCC-HHHHHHHHcCcHHH
Confidence 344455444433222234454 4567777766642 1 1257789999999998874 445555554 5788
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhcCCCc-hh-HHHHH----------hcCChHHHHHHhccchhHhHHHHHHHHHHHh
Q 014945 160 PIFVRLLSSPTDDVREQAVWALGNVAGDSP-KC-RDLVL----------SNGALMPLLAQFNEHAKLSMLRNATWTLSNF 227 (415)
Q Consensus 160 ~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~-~~-~~~~~----------~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l 227 (415)
..+...|.++++.++..++..|+.+|..+. .. ...++ +..-+..++..+..+.+.+....++..+-.+
T Consensus 103 ~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~l 182 (386)
T 2bnx_A 103 LLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINAL 182 (386)
T ss_dssp HHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 999999999999999999999988886543 22 23322 2234566777775556677777777777777
Q ss_pred hhCCC
Q 014945 228 CRGKP 232 (415)
Q Consensus 228 ~~~~~ 232 (415)
....+
T Consensus 183 v~~~~ 187 (386)
T 2bnx_A 183 ITPAE 187 (386)
T ss_dssp HTTCS
T ss_pred HCCCC
Confidence 76644
No 129
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=93.93 E-value=3.6 Score=37.33 Aligned_cols=145 Identities=12% Similarity=0.139 Sum_probs=92.4
Q ss_pred chhhHHHHhCCChHHHHHhhCC-----------CCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHh
Q 014945 147 SENTRVVIDHGAVPIFVRLLSS-----------PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLS 215 (415)
Q Consensus 147 ~~~~~~~~~~g~i~~L~~ll~~-----------~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~ 215 (415)
......+. .+++..|+.+|.. .+......++.||..+..........+-....+..+...+ .+.++.
T Consensus 100 ~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L-~s~~~~ 177 (383)
T 3eg5_B 100 VSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAM-DPAVPN 177 (383)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTC-CTTSHH
T ss_pred cHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHh-CCCchH
Confidence 45556665 4567778877741 2457788899999999876665544444455677788887 778888
Q ss_pred HHHHHHHHHHHhhhCCC-CCchhhh------------hchHHHHHHhhcC-CChhHHHHHHHHHHHhccCChHH------
Q 014945 216 MLRNATWTLSNFCRGKP-QPLFEQT------------RPALPALERLIHS-NDDEVLTDACWALSYLSDGTNDK------ 275 (415)
Q Consensus 216 ~~~~a~~~l~~l~~~~~-~~~~~~~------------~~~l~~l~~lL~~-~d~~v~~~a~~~l~~l~~~~~~~------ 275 (415)
++..++..|..+|.... ..-...+ ..-+..++..|.. .+.+....++..|..+....++.
T Consensus 178 ~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~l 257 (383)
T 3eg5_B 178 MMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHI 257 (383)
T ss_dssp HHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 99999999999998753 2201111 1124456777776 46777777777776666554422
Q ss_pred HHHHHHcCcHHHHHHhcCC
Q 014945 276 IQAVIEAGVCPRLVELLRH 294 (415)
Q Consensus 276 ~~~~~~~~~i~~L~~lL~~ 294 (415)
...+...|+.+.+-. |..
T Consensus 258 R~ef~~~Gl~~il~~-lr~ 275 (383)
T 3eg5_B 258 RSELMRLGLHQVLQE-LRE 275 (383)
T ss_dssp HHHHHHTTHHHHHHH-HTT
T ss_pred HHHHHHCChHHHHHH-Hhc
Confidence 222445576555555 543
No 130
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=93.77 E-value=1.8 Score=45.91 Aligned_cols=244 Identities=11% Similarity=0.050 Sum_probs=138.1
Q ss_pred hHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHhh--CCCCHHHHHHHHHHHHHhcCC-----CchhHHHHHhcCCh
Q 014945 129 PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLL--SSPTDDVREQAVWALGNVAGD-----SPKCRDLVLSNGAL 201 (415)
Q Consensus 129 ~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll--~~~~~~v~~~a~~~L~nl~~~-----~~~~~~~~~~~g~i 201 (415)
...|.+|-..|..+-.. + .....+...| .+.+..++..|+..|.|.... +++.+..+.
T Consensus 27 ~~~r~~Ae~~L~~~~~~-p---------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir----- 91 (1204)
T 3a6p_A 27 QRYRLEALKFCEEFKEK-C---------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLK----- 91 (1204)
T ss_dssp HHHHHHHHHHHHHHHHH-C---------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHH-----
T ss_pred hHHHHHHHHHHHHHHhC-c---------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHH-----
Confidence 67788888888776542 2 1333344433 346788999999999987632 233333322
Q ss_pred HHHHHHhccc------hhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccC----
Q 014945 202 MPLLAQFNEH------AKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDG---- 271 (415)
Q Consensus 202 ~~L~~~l~~~------~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~---- 271 (415)
..++..+... .+..++..++.+++.++...-... -..+++.++.++.+ ++.....++.+|..++..
T Consensus 92 ~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~---Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~~ 167 (1204)
T 3a6p_A 92 NSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQH---WPDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVTF 167 (1204)
T ss_dssp HHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTT---CTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCccc---chHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHccc
Confidence 2344443222 356788888999999887641122 24677888888866 455567777787777532
Q ss_pred ---ChHHHHH---HHHc---CcHHHHHHhcCC-------------------CChhhHHHHHHHHHHhhcCChHHHHHHHH
Q 014945 272 ---TNDKIQA---VIEA---GVCPRLVELLRH-------------------PSPSVLIPALRTVGNIVTGDDMQTQCIIN 323 (415)
Q Consensus 272 ---~~~~~~~---~~~~---~~i~~L~~lL~~-------------------~~~~v~~~a~~~l~nl~~~~~~~~~~~~~ 323 (415)
...+... .+.. .+++.+..++.. .+..+...++.++.+...--+ ...+.+
T Consensus 168 ~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~--~~~i~~ 245 (1204)
T 3a6p_A 168 QTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVS--MSHITA 245 (1204)
T ss_dssp CCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSC--HHHHHT
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccC--HHHHHh
Confidence 1111111 1111 223333333322 123466778888877765433 223334
Q ss_pred CC--ChHHHHHHhcCCCccchHHHHHHHHHHHhcC--CHHHHHHHHHc---CCHHHHHHHhc--------cCCHHHHHHH
Q 014945 324 HQ--ALPCLLDLLTQNYKKSIKKEACWTISNITAG--NVNQIQAIIEA---GIIGPLVNLLL--------NAEFEIKKEA 388 (415)
Q Consensus 324 ~~--~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~--~~~~~~~l~~~---~~i~~L~~~l~--------~~~~~v~~~a 388 (415)
.. +++.+..++. ++.++..|+.+|..++.. .++....++.. ..+..++..+. +.+.++.+..
T Consensus 246 ~~~~ll~~l~~~l~---~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l 322 (1204)
T 3a6p_A 246 ENCKLLEILCLLLN---EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRL 322 (1204)
T ss_dssp TTSHHHHHHHHGGG---CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHH
T ss_pred ccchHHHHHHHHcC---CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHH
Confidence 33 6777776654 468899999999999973 24433333321 01234444432 2245677777
Q ss_pred HHHHHHHh
Q 014945 389 AWAISNAT 396 (415)
Q Consensus 389 ~~aL~nl~ 396 (415)
+..+..+.
T Consensus 323 ~~ll~~lg 330 (1204)
T 3a6p_A 323 CQVLCALG 330 (1204)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776665
No 131
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=93.64 E-value=3.9 Score=36.87 Aligned_cols=88 Identities=11% Similarity=0.151 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCCchhhHHHHhCCChHHHHHh
Q 014945 86 NIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRL 165 (415)
Q Consensus 86 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~l 165 (415)
+.+...+..+..++-.. ++. + -.++++.++.+-.+.+ .++|...+..|...+....+... .+++.|..+
T Consensus 40 ~~Kl~~L~q~~EL~l~~-dps---L-l~~fl~~il~f~~d~~-~~vRk~~a~FieEa~~~~~el~~-----~~l~~L~~L 108 (386)
T 3o2t_A 40 DSKITVLKQVQELIINK-DPT---L-LDNFLDEIIAFQADKS-IEVRKFVIGFIEEACKRDIELLL-----KLIANLNML 108 (386)
T ss_dssp THHHHHHHHHHHHHHTT-CGG---G-GGGGHHHHHGGGGCSC-HHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcc-CHH---H-HHHHHHHHHHhccCCc-HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH
Confidence 46788888888875532 221 2 2457899999999888 99999999999888865444432 357788889
Q ss_pred hCCCCHHHHHHHHHHHHHh
Q 014945 166 LSSPTDDVREQAVWALGNV 184 (415)
Q Consensus 166 l~~~~~~v~~~a~~~L~nl 184 (415)
|.++++.+...++.+.+++
T Consensus 109 L~d~d~~V~K~~I~~~tsl 127 (386)
T 3o2t_A 109 LRDENVNVVKKAILTMTQL 127 (386)
T ss_dssp HTCSSHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHH
Confidence 9988999999999888886
No 132
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=93.20 E-value=3.3 Score=34.61 Aligned_cols=165 Identities=11% Similarity=0.133 Sum_probs=97.3
Q ss_pred chhhHHHHhCCChHHHHHhhCC-----------CCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHh
Q 014945 147 SENTRVVIDHGAVPIFVRLLSS-----------PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLS 215 (415)
Q Consensus 147 ~~~~~~~~~~g~i~~L~~ll~~-----------~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~ 215 (415)
......+ ..+++..|+.+|.. .+......++.||..+..........+...+.+..+...+ .++++.
T Consensus 34 ~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L-~s~~~~ 111 (233)
T 2f31_A 34 VSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAM-DPAVPN 111 (233)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTC-CTTSHH
T ss_pred cHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHh-CCCCch
Confidence 4455555 34667777776642 1356778899999999876665544444455677777777 778888
Q ss_pred HHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcC-C
Q 014945 216 MLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR-H 294 (415)
Q Consensus 216 ~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~-~ 294 (415)
++..++..|+.+|..+... |..+.+++.+. +... .-+..-+..+++.|. +
T Consensus 112 ~r~~~leLL~~lc~~~~~~------G~~~~VL~Al~---------------~~~~--------~~e~~RF~~lv~~l~~~ 162 (233)
T 2f31_A 112 MMIDAAKLLSALCILPQPE------DMNERVLEAMT---------------ERAE--------MDEVERFQPLLDGLKSG 162 (233)
T ss_dssp HHHHHHHHHHHHHTCSSSS------CHHHHHHHHHH---------------HHHH--------HHTSCTTHHHHHTTSTT
T ss_pred HHHHHHHHHHHHHhCCCCC------ChHHHHHHHHH---------------HHHH--------hCCcchHHHHHHHHhcC
Confidence 9999999999888764210 10222222221 1100 011223455666665 3
Q ss_pred CChhhHHHHHHHHHHhhcCCh------HHHHHHHHCCChHHHHHHhcCCCccchH
Q 014945 295 PSPSVLIPALRTVGNIVTGDD------MQTQCIINHQALPCLLDLLTQNYKKSIK 343 (415)
Q Consensus 295 ~~~~v~~~a~~~l~nl~~~~~------~~~~~~~~~~~l~~L~~ll~~~~~~~v~ 343 (415)
.+...+..++..+..++.+.+ ..+..+...|+.+.+-++=... ++.+.
T Consensus 163 ~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~l~~~~-~~~L~ 216 (233)
T 2f31_A 163 TSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIE-NEDMK 216 (233)
T ss_dssp SCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHCC-CHHHH
T ss_pred ChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHhccC-CHHHH
Confidence 456777777777777777655 2334455667766665554433 44443
No 133
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=92.46 E-value=2 Score=37.03 Aligned_cols=137 Identities=11% Similarity=0.055 Sum_probs=89.9
Q ss_pred ChhHHHHHHHHHHHhccCChHHHHHHH-HcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHC--CChHHH
Q 014945 254 DDEVLTDACWALSYLSDGTNDKIQAVI-EAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINH--QALPCL 330 (415)
Q Consensus 254 d~~v~~~a~~~l~~l~~~~~~~~~~~~-~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~--~~l~~L 330 (415)
|.+-...++..|..++..-......+- +...+..|+ +.....+.+++.|.++|+.....+|.....+.+. .++..+
T Consensus 41 D~~~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~l 119 (315)
T 3qml_C 41 DIARLEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKI 119 (315)
T ss_dssp HHHHHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHH
Confidence 455677888888888765443333222 223444444 3344567899999999999999999888877653 455555
Q ss_pred HHHhcC----C--CccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccC--CHHHHHHHHHHHHHHh
Q 014945 331 LDLLTQ----N--YKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--EFEIKKEAAWAISNAT 396 (415)
Q Consensus 331 ~~ll~~----~--~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~--~~~v~~~a~~aL~nl~ 396 (415)
+.-|.. . ....+.+.-+.+|.-|...+.. + ....+..|.+++... ++.++..++..+..+.
T Consensus 120 f~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~----F-~~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f 188 (315)
T 3qml_C 120 MAALSNLNDSNHRSSNILIKRYLSILNELPVTSED----L-PIYSTVVLQNVYERNNKDKQLQIKVLELISKIL 188 (315)
T ss_dssp HHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTT----C---CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHh----h-hhccHHHHHHHHccCCCCHHHHHHHHHHHHHHc
Confidence 544422 1 1335667777777777765421 1 244667888888777 8999999998888887
No 134
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=90.35 E-value=10 Score=34.37 Aligned_cols=231 Identities=13% Similarity=0.040 Sum_probs=120.1
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCC
Q 014945 152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK 231 (415)
Q Consensus 152 ~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~ 231 (415)
..++...+-.|+.+++++|+.-|+..-.+|..+-+.-...|..+.. .+-..+.+.+.......-....+.+++.+..+.
T Consensus 124 ~~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Irk-~innif~~fiye~e~~~GIaeLLeilgsIinGf 202 (403)
T 3fga_B 124 KYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRK-QINNIFYRFIYETEHHNGIAELLEILGSIINGF 202 (403)
T ss_dssp TTSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHHH-HHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHC
T ss_pred hhcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHhcCcccCCCHHHHHHHHHHHHccc
Confidence 3444456788999999999999998888888876555544444432 122334444422222223445666666666665
Q ss_pred CCC-chhhhhchHHHHHHhhcCCChh-HHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHH
Q 014945 232 PQP-LFEQTRPALPALERLIHSNDDE-VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 309 (415)
Q Consensus 232 ~~~-~~~~~~~~l~~l~~lL~~~d~~-v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~n 309 (415)
..+ ......-+...|+.+-....-. .......++......++.....+ +..|+..=-..+..=...-+.-+..
T Consensus 203 a~PLkeehk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~L~~~v-----i~~LLk~WP~tns~KevlFL~Ele~ 277 (403)
T 3fga_B 203 ALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPV-----VMALLKYWPKTHSPKEVMFLNELEE 277 (403)
T ss_dssp CSSCCHHHHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGGGHHHH-----HHHHHHTCCSSCHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhCchhHHHH-----HHHHHHhCCCCCcHHHHHHHHHHHH
Confidence 222 2222233344555555544322 22334444444444444433221 2333332222233223334444555
Q ss_pred hhcCC-hHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHH-----HHhcCCHHHHHHHHHcCCHHHHHHHh----cc
Q 014945 310 IVTGD-DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTIS-----NITAGNVNQIQAIIEAGIIGPLVNLL----LN 379 (415)
Q Consensus 310 l~~~~-~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~-----nl~~~~~~~~~~l~~~~~i~~L~~~l----~~ 379 (415)
+.... +...+.+.. .++..+...+.++ +..|.+.|..... ++...+... ++|.+...+ ..
T Consensus 278 iLe~~~~~~f~~i~~-~lf~~la~ci~S~-hfqVAErAL~~wnNe~i~~li~~n~~~--------IlPii~p~L~~~~~~ 347 (403)
T 3fga_B 278 ILDVIEPSEFVKIME-PLFRQLAKCVSSP-HFQVAERALYYWNNEYIMSLISDNAAK--------ILPIMFPSLYRNSKT 347 (403)
T ss_dssp HHTTCCHHHHHHHHH-HHHHHHHHHHTCS-CHHHHHHHHGGGGCHHHHHHHHTTHHH--------HHHHHHHHHHHTTSC
T ss_pred HHHhCCHHHHHHHHH-HHHHHHHHHHCCC-CHHHHHHHHHHhccHHHHHHHHHhHHH--------HHHHHHHHHHHHHHH
Confidence 55433 233332222 4667777888888 8888887765542 222222222 344444443 32
Q ss_pred -CCHHHHHHHHHHHHHHhCC
Q 014945 380 -AEFEIKKEAAWAISNATSG 398 (415)
Q Consensus 380 -~~~~v~~~a~~aL~nl~~~ 398 (415)
=+..++..|..++.-+...
T Consensus 348 HWn~~v~~l~~~vlk~l~e~ 367 (403)
T 3fga_B 348 HWNKTIHGLIYNALKLFMEM 367 (403)
T ss_dssp CSCHHHHHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHHHHHHh
Confidence 2678998888888887644
No 135
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=89.26 E-value=8.7 Score=35.40 Aligned_cols=226 Identities=12% Similarity=0.075 Sum_probs=120.8
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCC-----c
Q 014945 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGT-----S 147 (415)
Q Consensus 73 i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~-----~ 147 (415)
+..|+..+.|.|+..+..--..|..+... -...+.++...+-..+.+++.......-..+.+.+++.+..|- .
T Consensus 164 i~~Ll~lfdSeDpRERd~LktiLhrIY~K--f~~~R~~Irk~i~nif~~fi~e~e~~nGIaeLLeilgSIinGfa~PLKe 241 (449)
T 2npp_B 164 VLQLLELFDSEDPRERDFLKTTLHRIYGK--FLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKE 241 (449)
T ss_dssp HHHHHHTTTSSTHHHHHHHHHHHHHHHHS--CTTTHHHHHHHHHHHHHHHHHTCSCCSCHHHHHHHHHHHHSSCCSSCCH
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHhccCCCCcH
Confidence 56788888888888887777777776543 2333444433344556666654332334556777888877653 2
Q ss_pred hhhHHHHhCCChHHHHHhhCCCCH-HHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHH
Q 014945 148 ENTRVVIDHGAVPIFVRLLSSPTD-DVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSN 226 (415)
Q Consensus 148 ~~~~~~~~~g~i~~L~~ll~~~~~-~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~ 226 (415)
+++..+ ...|+.+.....- .-..+-..|+..+...++..... ++..|+..- ..++..-...-+.-+..
T Consensus 242 ehk~fl-----~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~-----vi~~LLk~W-P~tns~KevlFL~elee 310 (449)
T 2npp_B 242 EHKIFL-----LKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEP-----VVMALLKYW-PKTHSPKEVMFLNELEE 310 (449)
T ss_dssp HHHHHH-----HHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGGGHHH-----HHHHHHHTC-CSSCHHHHHHHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHccchhHHhHHHHHHHHHHHHhcCcHhHHH-----HHHHHHHhC-CCCCchHHHHHHHHHHH
Confidence 333222 2233334433321 22335556666665555543222 233344333 22232222223333444
Q ss_pred hhhCCCCCch-hhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHc---CcHHHHHHhcC-----CCCh
Q 014945 227 FCRGKPQPLF-EQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA---GVCPRLVELLR-----HPSP 297 (415)
Q Consensus 227 l~~~~~~~~~-~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~---~~i~~L~~lL~-----~~~~ 297 (415)
+...-+...+ .....++..+..++.+++-.|.+.|+....| +.. -.++.. .++|.+...|. |-+.
T Consensus 311 ile~~~~~ef~~i~~~lF~~la~ci~S~hfqVAErAL~~w~N-----~~i-~~li~~n~~~IlPii~p~L~~~s~~HWn~ 384 (449)
T 2npp_B 311 ILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNN-----EYI-MSLISDNAAKILPIMFPSLYRNSKTHWNK 384 (449)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGC-----HHH-HHHHHTTHHHHHHHHHHHHTSCTTCCSST
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHCC-----HHH-HHHHHhchhhhHHhhHHHHHHHHHHhcCH
Confidence 4433222222 2335677788888999998888887654322 111 122222 24566666552 3356
Q ss_pred hhHHHHHHHHHHhhcCChHH
Q 014945 298 SVLIPALRTVGNIVTGDDMQ 317 (415)
Q Consensus 298 ~v~~~a~~~l~nl~~~~~~~ 317 (415)
.++..+..++.-+...++..
T Consensus 385 ~V~~la~~vlk~l~e~d~~l 404 (449)
T 2npp_B 385 TIHGLIYNALKLFMEMNQKL 404 (449)
T ss_dssp THHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHCHHH
Confidence 79999998888777766543
No 136
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=88.90 E-value=13 Score=33.63 Aligned_cols=165 Identities=11% Similarity=0.119 Sum_probs=97.5
Q ss_pred chhhHHHHhCCChHHHHHhhCC-----------CCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHh
Q 014945 147 SENTRVVIDHGAVPIFVRLLSS-----------PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLS 215 (415)
Q Consensus 147 ~~~~~~~~~~g~i~~L~~ll~~-----------~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~ 215 (415)
..+...+. .+++..|+.+|.. .+......++.||..|.....+....+...+.+..+...+ .+.++.
T Consensus 38 ~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL-~s~~~~ 115 (386)
T 2bnx_A 38 VSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAM-DPAVPN 115 (386)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTC-CTTSHH
T ss_pred cHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHh-CCCCch
Confidence 34455554 4566667776632 1456788899999999877666544454555677777777 677888
Q ss_pred HHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcC-C
Q 014945 216 MLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR-H 294 (415)
Q Consensus 216 ~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~-~ 294 (415)
++..++..|..+|...... |..+.++..+. +.. ..-+..-+..++..+. +
T Consensus 116 ~r~~vleLL~alc~~~~~~------G~~~~VL~Al~---------------~~~--------~~~e~~RF~~lv~~l~~~ 166 (386)
T 2bnx_A 116 MMIDAAKLLSALCILPQPE------DMNERVLEAMT---------------ERA--------EMDEVERFQPLLDGLKSG 166 (386)
T ss_dssp HHHHHHHHHHHHHTCCSST------THHHHHHHHHH---------------HHH--------HHHTSCTTHHHHHHTSTT
T ss_pred HHHHHHHHHHHHHcCCCCC------ChHHHHHHHHH---------------HHH--------HhCchhhHHHHHHHHHcC
Confidence 8888998998888764211 11222222221 110 0111223455666665 4
Q ss_pred CChhhHHHHHHHHHHhhcCCh------HHHHHHHHCCChHHHHHHhcCCCccchH
Q 014945 295 PSPSVLIPALRTVGNIVTGDD------MQTQCIINHQALPCLLDLLTQNYKKSIK 343 (415)
Q Consensus 295 ~~~~v~~~a~~~l~nl~~~~~------~~~~~~~~~~~l~~L~~ll~~~~~~~v~ 343 (415)
.+......++..+..++.+.+ ..+..+...|+.+.+-.+-... ++.+.
T Consensus 167 ~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~~il~~Lr~~~-~~~L~ 220 (386)
T 2bnx_A 167 TSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIE-NEDMK 220 (386)
T ss_dssp SCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHHHHHTTCC-CHHHH
T ss_pred ChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHhccC-ChhHH
Confidence 456777777777777777665 2344555667766665544333 54443
No 137
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=88.34 E-value=8.3 Score=34.93 Aligned_cols=224 Identities=13% Similarity=0.097 Sum_probs=111.3
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCC-----c
Q 014945 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGT-----S 147 (415)
Q Consensus 73 i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~-----~ 147 (415)
+..|+..+.|.|+..+...-..|..+... -...+.++...+-..+.+++.......-..+.+.+++.+..|- .
T Consensus 131 i~~Ll~lfdSeDprER~~LktiLhrIY~k--f~~~R~~Irk~innif~~fiye~e~~~GIaeLLeilgsIinGfa~PLke 208 (403)
T 3fga_B 131 VLQLLELFDSEDPRERDFLKTTLHRIYGK--FLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKE 208 (403)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHCCSSCCH
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHcccCCCchH
Confidence 55677777788887777777777766432 2333333333333455555544321223345566666665542 1
Q ss_pred hhhHHHHhCCChHHHHHhhCCCCH-HHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHH
Q 014945 148 ENTRVVIDHGAVPIFVRLLSSPTD-DVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSN 226 (415)
Q Consensus 148 ~~~~~~~~~g~i~~L~~ll~~~~~-~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~ 226 (415)
+++..+. ..|+.+.....- .-..+...|+..+...+|..... .+..|++.- ..++..-...-+.-+..
T Consensus 209 ehk~fl~-----~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~L~~~-----vi~~LLk~W-P~tns~KevlFL~Ele~ 277 (403)
T 3fga_B 209 EHKIFLL-----KVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEP-----VVMALLKYW-PKTHSPKEVMFLNELEE 277 (403)
T ss_dssp HHHHHHH-----HTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGGGHHH-----HHHHHHHTC-CSSCHHHHHHHHHHHHH
T ss_pred HHHHHHH-----HHHHHHHcCCcchhhHHHHHHHHHHHHHhCchhHHH-----HHHHHHHhC-CCCCcHHHHHHHHHHHH
Confidence 2322222 223333333221 22345566666666555543232 223333333 22232222223333444
Q ss_pred hhhCCCCCch-hhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHc---CcHHHHHHhc-----CCCCh
Q 014945 227 FCRGKPQPLF-EQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA---GVCPRLVELL-----RHPSP 297 (415)
Q Consensus 227 l~~~~~~~~~-~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~---~~i~~L~~lL-----~~~~~ 297 (415)
+...-+...+ .....++..+..++.+++-.|.+.|+.... ++ .+-.++.. .++|.+...| .|-+.
T Consensus 278 iLe~~~~~~f~~i~~~lf~~la~ci~S~hfqVAErAL~~wn-----Ne-~i~~li~~n~~~IlPii~p~L~~~~~~HWn~ 351 (403)
T 3fga_B 278 ILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWN-----NE-YIMSLISDNAAKILPIMFPSLYRNSKTHWNK 351 (403)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGG-----CH-HHHHHHHTTHHHHHHHHHHHHHHTTSCCSCH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHhc-----cH-HHHHHHHHhHHHHHHHHHHHHHHHHHHccCH
Confidence 4443222222 223556777888888998888887765432 12 12222222 2344444444 24467
Q ss_pred hhHHHHHHHHHHhhcCCh
Q 014945 298 SVLIPALRTVGNIVTGDD 315 (415)
Q Consensus 298 ~v~~~a~~~l~nl~~~~~ 315 (415)
.++..+..++.-+...++
T Consensus 352 ~v~~l~~~vlk~l~e~d~ 369 (403)
T 3fga_B 352 TIHGLIYNALKLFMEMNQ 369 (403)
T ss_dssp HHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHhCH
Confidence 888888888877765443
No 138
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=85.37 E-value=23 Score=32.66 Aligned_cols=235 Identities=14% Similarity=0.054 Sum_probs=124.7
Q ss_pred hHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhh
Q 014945 150 TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 229 (415)
Q Consensus 150 ~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~ 229 (415)
....++...+..|+.+++++|+.-|+..-.+|..|-+.-...|..+... +-..+.+.+.......-...++++++.+..
T Consensus 155 ~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~-i~nif~~fi~e~e~~nGIaeLLeilgSIin 233 (449)
T 2npp_B 155 AKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQ-INNIFYRFIYETEHHNGIAELLEILGSIIN 233 (449)
T ss_dssp GGGTSCHHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHHHH-HHHHHHHHHHTCSCCSCHHHHHHHHHHHHS
T ss_pred hhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcccCCCCCHHHHHHHHHHHHh
Confidence 3445556678899999999999999888888877765444444444331 233444554333333344567777777777
Q ss_pred CCCCC-chhhhhchHHHHHHhhcCCChh-HHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHH
Q 014945 230 GKPQP-LFEQTRPALPALERLIHSNDDE-VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV 307 (415)
Q Consensus 230 ~~~~~-~~~~~~~~l~~l~~lL~~~d~~-v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l 307 (415)
+...+ ......-+...|+.+.....-. .......++..+...++..... ++..|+..=-..+..=...-+.-|
T Consensus 234 Gfa~PLKeehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~-----vi~~LLk~WP~tns~KevlFL~el 308 (449)
T 2npp_B 234 GFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEP-----VVMALLKYWPKTHSPKEVMFLNEL 308 (449)
T ss_dssp SCCSSCCHHHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGGGHHH-----HHHHHHHTCCSSCHHHHHHHHHHH
T ss_pred ccCCCCcHHHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhcCcHhHHH-----HHHHHHHhCCCCCchHHHHHHHHH
Confidence 65222 2222233345555655544322 2223334444444444433322 223333332222322223344455
Q ss_pred HHhhcCC-hHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHH---cCCHHHHHHHhcc----
Q 014945 308 GNIVTGD-DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE---AGIIGPLVNLLLN---- 379 (415)
Q Consensus 308 ~nl~~~~-~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~---~~~i~~L~~~l~~---- 379 (415)
..+.... +...+.+.. -++..+...+.++ +..|.+.|..... ++. +..++. ..++|.+...+..
T Consensus 309 eeile~~~~~ef~~i~~-~lF~~la~ci~S~-hfqVAErAL~~w~-----N~~-i~~li~~n~~~IlPii~p~L~~~s~~ 380 (449)
T 2npp_B 309 EEILDVIEPSEFVKIME-PLFRQLAKCVSSP-HFQVAERALYYWN-----NEY-IMSLISDNAAKILPIMFPSLYRNSKT 380 (449)
T ss_dssp HHHHTTCCHHHHHHHHH-HHHHHHHHHHTCS-CHHHHHHHHGGGG-----CHH-HHHHHHTTHHHHHHHHHHHHTSCTTC
T ss_pred HHHHHhCCHHHHHHHHH-HHHHHHHHHHcCC-CHHHHHHHHHHHC-----CHH-HHHHHHhchhhhHHhhHHHHHHHHHH
Confidence 5555433 333332222 4667788888888 8888888775432 111 122222 1245666665532
Q ss_pred -CCHHHHHHHHHHHHHHhCC
Q 014945 380 -AEFEIKKEAAWAISNATSG 398 (415)
Q Consensus 380 -~~~~v~~~a~~aL~nl~~~ 398 (415)
=+..++..|..++.-+...
T Consensus 381 HWn~~V~~la~~vlk~l~e~ 400 (449)
T 2npp_B 381 HWNKTIHGLIYNALKLFMEM 400 (449)
T ss_dssp CSSTTHHHHHHHHHHHHHTT
T ss_pred hcCHHHHHHHHHHHHHHHHH
Confidence 2467888888888866655
No 139
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=83.24 E-value=2.2 Score=33.42 Aligned_cols=74 Identities=12% Similarity=0.061 Sum_probs=55.2
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhC
Q 014945 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIAS 144 (415)
Q Consensus 71 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~ 144 (415)
+++..+.+.|++.++.++..|+..|-.++.........++....++..|+.++....++.++..++..+...+.
T Consensus 52 eA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~ 125 (163)
T 1x5b_A 52 DCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSE 125 (163)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 46677888889999999999999998887654233334566677888888888763337888888887765553
No 140
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=82.57 E-value=2.7 Score=32.27 Aligned_cols=74 Identities=14% Similarity=-0.002 Sum_probs=56.7
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCC-----CChHHHHHHHHHHHHHhC
Q 014945 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRD-----DFPQLQFEAAWALTNIAS 144 (415)
Q Consensus 71 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~-----~~~~i~~~a~~~L~~l~~ 144 (415)
+++..+.+.|++.++.++..|+..|-.+....+.....++....++..|++++... .++.++..++..+...+.
T Consensus 38 ~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 38 HAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 46778888999999999999999999887764333445666778899999998741 237889888888766554
No 141
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=82.28 E-value=1.7 Score=32.97 Aligned_cols=72 Identities=14% Similarity=0.115 Sum_probs=52.6
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHh
Q 014945 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIA 143 (415)
Q Consensus 71 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~ 143 (415)
+++..+.+.|++.++..+..|+..|-.+....+.....++....++..|+.+++..+ +.++..++..+...+
T Consensus 42 ~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~-~~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 42 DCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGH-PKVCEKLKALMVEWT 113 (140)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSC-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCC-HHHHHHHHHHHHHHH
Confidence 456778888888999999999988888776542233334556667788888887666 888888887776655
No 142
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=80.75 E-value=3.3 Score=31.73 Aligned_cols=73 Identities=11% Similarity=0.003 Sum_probs=56.1
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcC------CCChHHHHHHHHHHHHHhC
Q 014945 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSR------DDFPQLQFEAAWALTNIAS 144 (415)
Q Consensus 71 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~------~~~~~i~~~a~~~L~~l~~ 144 (415)
+++..+.+.+++.++.++..|+..|-.+..........++....++..|++++.. .+ +.++..++..+...+.
T Consensus 48 ~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~-~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 48 LATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTS-EKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSC-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCC-HHHHHHHHHHHHHHHH
Confidence 4677888889999999999999999888765433334556677788999999874 34 7888888888876654
No 143
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=80.27 E-value=23 Score=29.04 Aligned_cols=127 Identities=9% Similarity=-0.016 Sum_probs=65.0
Q ss_pred HHHhhcCCChhHHHHHHHHHHHhccC-ChHHHHHHHHcCcHHHHHHhcC-CCChhhHHHHHHHHHHhhcCChHHHHHHHH
Q 014945 246 LERLIHSNDDEVLTDACWALSYLSDG-TNDKIQAVIEAGVCPRLVELLR-HPSPSVLIPALRTVGNIVTGDDMQTQCIIN 323 (415)
Q Consensus 246 l~~lL~~~d~~v~~~a~~~l~~l~~~-~~~~~~~~~~~~~i~~L~~lL~-~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~ 323 (415)
+..+.+++.-+.+.-++..+...... .++. ++.+-.++. -+++.+....+.+++.++...+..
T Consensus 60 ~~~L~~s~~~E~r~la~~~l~~~~~~~~~~~---------l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~~~~~------ 124 (220)
T 2b6c_A 60 IEAYYQKTEREYQYVAIDLALQNVQRFSLEE---------VVAFKAYVPQKAWWDSVDAWRKFFGSWVALHLTE------ 124 (220)
T ss_dssp HHHHHTSSSHHHHHHHHHHHHHTGGGCCHHH---------HHHGGGGTTTTCSHHHHHHHHHHHHHHHHHSGGG------
T ss_pred HHHHHcCchhHHHHHHHHHHHHHHhhCCHHH---------HHHHHHHhccCCcHHHHHHHHHHHHHHHHHChHH------
Confidence 34445555566666666666554322 2211 122222332 345566665556666665443321
Q ss_pred CCChHHHHHHhcCCCccchHHHHHHHHHHHhc-CCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHhCC
Q 014945 324 HQALPCLLDLLTQNYKKSIKKEACWTISNITA-GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSG 398 (415)
Q Consensus 324 ~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~-~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~ 398 (415)
+.+.+.....++ +.-+|+.|+-.+..... ++++. +++.+-..+.+++.-|++...|+|..+...
T Consensus 125 --~~~~i~~W~~s~-~~w~rR~ai~~~l~~~~~~~~~~--------~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~ 189 (220)
T 2b6c_A 125 --LPTIFALFYGAE-NFWNRRVALNLQLMLKEKTNQDL--------LKKAIIYDRTTEEFFIQKAIGWSLRQYSKT 189 (220)
T ss_dssp --HHHHHHHHTTCS-SHHHHHHHHHTTTTCGGGCCHHH--------HHHHHHHTTTCCCHHHHHHHHHHHHHHTTT
T ss_pred --HHHHHHHHHcCC-CHHHHHHHHHHHHHHHHCCCHHH--------HHHHHHHhCCChHHHHHHHHHHHHHHHHhh
Confidence 234566667666 66666666554322221 23321 123333355667777777777777777766
No 144
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=78.87 E-value=18 Score=31.29 Aligned_cols=148 Identities=10% Similarity=0.016 Sum_probs=90.8
Q ss_pred cHHHHHHhhcCC------CHHHHHHHHHHHHHHhccCCCCchhHHHh--cCchHHHHHhhcCCCChHHHHHHHHHHHHHh
Q 014945 72 SLPAMVAGVWSD------DRNIQLDATTQFRKLLSIERSPPINEVIQ--SGVVPRFIEFLSRDDFPQLQFEAAWALTNIA 143 (415)
Q Consensus 72 ~i~~l~~~l~~~------~~~~~~~a~~~l~~l~~~~~~~~~~~~~~--~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~ 143 (415)
.+..+...++++ |......|+..|..+... ....-.++. ..++..|+ +..... +.++..|+++++...
T Consensus 23 ~F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHD--i~~G~KI~~~ef~lL~nL~-~~~~~~-~~~rE~aarII~ssL 98 (315)
T 3qml_C 23 DFKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHD--YKHGYKIITHEFALLANLS-LNENLP-LTLRELSTRVITSCL 98 (315)
T ss_dssp HHHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTS--HHHHHHHHHHHHHHHHHHH-HCTTSC-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhh--HHhhhHHHhCcHHHHHHHH-hhccCC-hhHHHHHHHHHHHHH
Confidence 455666666665 444555677777666321 222233443 22333444 333444 789999999999999
Q ss_pred CCCchhhHHHHhC--CChHHHHHhhC----C---CCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccch--
Q 014945 144 SGTSENTRVVIDH--GAVPIFVRLLS----S---PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA-- 212 (415)
Q Consensus 144 ~~~~~~~~~~~~~--g~i~~L~~ll~----~---~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~-- 212 (415)
..+|.....+.+. ..+..++.-|. . ....++..-+.+|--|..++..+ ....+..|..++ ...
T Consensus 99 RNNP~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~F-----~~~~m~~L~~ly-~~~~~ 172 (315)
T 3qml_C 99 RNNPPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSEDL-----PIYSTVVLQNVY-ERNNK 172 (315)
T ss_dssp TTCHHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTTC-------CCHHHHHHHH-HHTTT
T ss_pred ccCHHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHhh-----hhccHHHHHHHH-ccCCC
Confidence 9999988877763 44444443332 2 23456667777888887776433 244677888877 344
Q ss_pred hHhHHHHHHHHHHHhhh
Q 014945 213 KLSMLRNATWTLSNFCR 229 (415)
Q Consensus 213 ~~~~~~~a~~~l~~l~~ 229 (415)
+..++..++..+..+..
T Consensus 173 d~~~k~Kvl~li~d~f~ 189 (315)
T 3qml_C 173 DKQLQIKVLELISKILK 189 (315)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcc
Confidence 77788888877776664
No 145
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=78.86 E-value=22 Score=29.17 Aligned_cols=134 Identities=7% Similarity=-0.079 Sum_probs=76.3
Q ss_pred cchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcC-CChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHH
Q 014945 210 EHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRL 288 (415)
Q Consensus 210 ~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~-~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L 288 (415)
.++.-+.+..++..+........ ...++.+-.++.+ ++-.+....+.+++.+....+.. +.+.+
T Consensus 65 ~s~~~E~r~la~~~l~~~~~~~~-------~~~l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~~~~~--------~~~~i 129 (220)
T 2b6c_A 65 QKTEREYQYVAIDLALQNVQRFS-------LEEVVAFKAYVPQKAWWDSVDAWRKFFGSWVALHLTE--------LPTIF 129 (220)
T ss_dssp TSSSHHHHHHHHHHHHHTGGGCC-------HHHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHHSGGG--------HHHHH
T ss_pred cCchhHHHHHHHHHHHHHHhhCC-------HHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHChHH--------HHHHH
Confidence 33445555555555554431111 1223333444433 44555555555565554333321 34667
Q ss_pred HHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHH
Q 014945 289 VELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE 366 (415)
Q Consensus 289 ~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~ 366 (415)
.....+++.-++..|+..+-.... ...... .++.+-.++.++ +.-|++..+|+|..+...+++....++.
T Consensus 130 ~~W~~s~~~w~rR~ai~~~l~~~~--~~~~~~-----~~~i~~~~~~d~-~~yV~kavgW~Lr~~~k~~~~~v~~fl~ 199 (220)
T 2b6c_A 130 ALFYGAENFWNRRVALNLQLMLKE--KTNQDL-----LKKAIIYDRTTE-EFFIQKAIGWSLRQYSKTNPQWVEELMK 199 (220)
T ss_dssp HHHTTCSSHHHHHHHHHTTTTCGG--GCCHHH-----HHHHHHHTTTCC-CHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHH--CCCHHH-----HHHHHHHhCCCh-HHHHHHHHHHHHHHHHhhCHHHHHHHHh
Confidence 888888888888877664422211 111121 134444466777 8999999999999999988887666653
No 146
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=77.28 E-value=26 Score=31.58 Aligned_cols=191 Identities=13% Similarity=0.049 Sum_probs=97.2
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCC
Q 014945 152 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK 231 (415)
Q Consensus 152 ~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~ 231 (415)
..++...+..|+.+++++|+.-|+..-.+|..+-+.-...|..+.. .+-..+.+.+.......-...++++++.+..+.
T Consensus 169 ~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk-~i~nif~~fiye~e~~~GIaeLLeilgsIIngf 247 (392)
T 2jak_A 169 KYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRK-QINNIFYRFIYETEHHNGIAELLEILGSIINGF 247 (392)
T ss_dssp TTSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHHHHHH-HHHHHHHHHHTSSCCCSCHHHHHHHHHHHHHTC
T ss_pred hhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcc
Confidence 3444567888999999999999998888887776544444444433 133445555533333344556777777777775
Q ss_pred CCC-chhhhhchHHHHHHhhcCCChh-HHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHH
Q 014945 232 PQP-LFEQTRPALPALERLIHSNDDE-VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 309 (415)
Q Consensus 232 ~~~-~~~~~~~~l~~l~~lL~~~d~~-v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~n 309 (415)
..+ ......-+...|+.+.+...-. .......++......++.....+ +..|+..=-..+..=...-+.-|..
T Consensus 248 a~PLKeehk~Fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~v-----i~~LLk~WP~tns~KevlFL~elee 322 (392)
T 2jak_A 248 ALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPV-----VMALLKYWPKTHSPKEVMFLNELEE 322 (392)
T ss_dssp CSSCCHHHHHHHHHTTGGGGTSGGGGGTHHHHHHHHHHHHHHCGGGHHHH-----HHHHHHSSCSSCCTTHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHhHhhccCCcHHHhHHHHHHHHHHHHhcCchhHHHH-----HHHHHHhCCCCCchHHHHHHHHHHH
Confidence 222 2222233344555555543321 12233344444444444333221 2223322211121112223333444
Q ss_pred hhcCC-hHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHH
Q 014945 310 IVTGD-DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTI 350 (415)
Q Consensus 310 l~~~~-~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l 350 (415)
+.... +...+.+. .-+...+...+.++ +..|.+.|....
T Consensus 323 iLe~~~~~~f~~i~-~~lF~~la~ci~S~-hfqVAErAL~~w 362 (392)
T 2jak_A 323 ILDVIEPSEFVKIM-EPLFRQLAKCVSSP-HFQVAERALYYW 362 (392)
T ss_dssp HHHTCCHHHHHHHH-HHHHHHHHHHHTCS-SHHHHHHHHGGG
T ss_pred HHHhCCHHHHHHHH-HHHHHHHHHHHcCC-cHHHHHHHHHHh
Confidence 44332 22323222 24566777778877 777777765443
No 147
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=77.16 E-value=41 Score=30.25 Aligned_cols=122 Identities=18% Similarity=0.161 Sum_probs=79.3
Q ss_pred hhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHH
Q 014945 238 QTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQ 317 (415)
Q Consensus 238 ~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~ 317 (415)
....+++.++.+-.+.+.+++...+..|...+....+.. ..+++.|..+|.++++.+...++.+.+++-
T Consensus 60 Ll~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~-----~~~l~~L~~LL~d~d~~V~K~~I~~~tslY------ 128 (386)
T 3o2t_A 60 LLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELL-----LKLIANLNMLLRDENVNVVKKAILTMTQLY------ 128 (386)
T ss_dssp GGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHH------
Confidence 557889999999988899999999988888775444332 235677888888888888888888887753
Q ss_pred HHHHHHCCChHHHHHHh-cCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHh
Q 014945 318 TQCIINHQALPCLLDLL-TQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT 396 (415)
Q Consensus 318 ~~~~~~~~~l~~L~~ll-~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~ 396 (415)
+..+..+ .++ ......+.+|...+-.. ..++.++.+++..++..|+..+..+.
T Consensus 129 ----------pl~f~~i~~~~-~~~~~~e~~W~~m~~lK---------------~~Il~~~ds~n~GVrl~aiKFle~VI 182 (386)
T 3o2t_A 129 ----------KVALQWMVKSR-VISELQEACWDMVSAMA---------------GDIILLLDSDNDGIRTHAIKFVEGLI 182 (386)
T ss_dssp ----------HHHHHHHHHC--CCCHHHHHHHHHHHHHH---------------HHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHhcCC-CcchhHHHHHHHHHHHH---------------HHHHHHhccCCcchHHHHHHHHHHHH
Confidence 2233333 233 32333455565443321 13344455667777777777766655
No 148
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=76.22 E-value=3.9 Score=32.21 Aligned_cols=74 Identities=14% Similarity=0.004 Sum_probs=55.3
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCC-----CChHHHHHHHHHHHHHhC
Q 014945 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRD-----DFPQLQFEAAWALTNIAS 144 (415)
Q Consensus 71 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~-----~~~~i~~~a~~~L~~l~~ 144 (415)
+++..|.+.|++.++.++..|+..|-.++.........++....++..|+.++... .+..++..++..+...+.
T Consensus 50 ~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 50 IAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 35677888899999999999999999887653233334566778889999998631 227888888888876654
No 149
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=75.94 E-value=2.6 Score=34.98 Aligned_cols=74 Identities=11% Similarity=0.107 Sum_probs=54.3
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhC
Q 014945 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIAS 144 (415)
Q Consensus 71 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~ 144 (415)
+++..|.+.|++.++.++..|+..|-.++..-......++....++..|..+++....+.++..++..+...+.
T Consensus 45 ~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 45 YAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 46778888899999999999999988887654233344555667777888887654447888888887766553
No 150
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=74.29 E-value=7.6 Score=40.08 Aligned_cols=187 Identities=13% Similarity=0.080 Sum_probs=110.5
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhcc---chhHhHHHHHHHHHH--HhhhCCC
Q 014945 158 AVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE---HAKLSMLRNATWTLS--NFCRGKP 232 (415)
Q Consensus 158 ~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~---~~~~~~~~~a~~~l~--~l~~~~~ 232 (415)
++.-|+++-.+....|+..|-.+|......-+..+.. +++.++..|.. +.+.+-.+-|+++|. .+... -
T Consensus 134 ll~dL~~Ls~S~Y~~VR~~AQ~~L~~~~~~~~gs~~~-----iip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~~~-~ 207 (997)
T 1vsy_5 134 LLVDIIQLATSLYPDIYKPAQGTLVHCMKQLVGSYGV-----VINKIIPSLEKAIKDHDYMKIQVILNVLLIKKIHRK-L 207 (997)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHHHHHHHTTBTTHHHH-----HHHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHHHH-G
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHHhcccHHHH-----HHHHHHHHHhccccCCCHHHHHHHHHHHhhhhhhhH-H
Confidence 4667788888889999999999999988776655555 45677777754 345555666666554 12111 2
Q ss_pred CCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccC--------------------C----hHHHHHH---------
Q 014945 233 QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDG--------------------T----NDKIQAV--------- 279 (415)
Q Consensus 233 ~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~--------------------~----~~~~~~~--------- 279 (415)
..+......+++.|+...+.+.+.|+.-+-.+...+... + ...+...
T Consensus 208 ~~d~~~~~~~~~ali~~~~~dKpsI~~l~~~l~~~i~~~~~~p~~~~~~~~~~~~~i~~~d~~i~~~~~~~~~~~~~~r~ 287 (997)
T 1vsy_5 208 MTDYKDIGRLIFLLIECCRVNELEIGMYADKILTDIVIGIKIPSSVCVISDQAFLPLAPPDGTINLQVEAVKLAKKKKRE 287 (997)
T ss_dssp GGCHHHHHHHHHHHHHTCSCSSSSTTTHHHHHHHHHHTSCCCCCSCCCCCGGGTGGGCCSCSSTTSHHHHHHHHTTHHHH
T ss_pred hcChHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHH
Confidence 234455567777777776666665544433332222210 0 0000100
Q ss_pred -HH---cCcHHHHHHhc-CCCC--hhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHH
Q 014945 280 -IE---AGVCPRLVELL-RHPS--PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISN 352 (415)
Q Consensus 280 -~~---~~~i~~L~~lL-~~~~--~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~n 352 (415)
.. .++...++... .... +.....+++.+.++....+. .....++..+++.+.++ .|.+|+.|..++..
T Consensus 288 ~~~~~~~~L~~~l~~~~~~~~h~~Wk~~~~~~~~l~~l~~r~d~----~~~~~~v~~~~~~l~~d-hp~~R~~a~~~l~~ 362 (997)
T 1vsy_5 288 YYLSLLVDLQDKLLDKLDNEKDMGWKIRMFILRFVTQIQSNLES----KPDKRAVFSIISQISTK-HPEIIHLVVKSLLS 362 (997)
T ss_dssp HHHHHHHHHHHHHHHHHHSSTTCCSCHHHHHHHHHHHHTCCSSC----CCCHHHHHHHHGGGGGC-CHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcCCC----CCCHHHHHHHHHhhcCC-CHHHHHHHHHHHHH
Confidence 00 13334444554 3345 77777777886666643321 11123456778888888 99999999988877
Q ss_pred Hhc
Q 014945 353 ITA 355 (415)
Q Consensus 353 l~~ 355 (415)
+..
T Consensus 363 il~ 365 (997)
T 1vsy_5 363 TCN 365 (997)
T ss_dssp HHH
T ss_pred HHH
Confidence 664
No 151
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=71.52 E-value=3.7 Score=33.95 Aligned_cols=73 Identities=12% Similarity=0.099 Sum_probs=53.0
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHh
Q 014945 71 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIA 143 (415)
Q Consensus 71 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~ 143 (415)
+++..|.+.|++.++.++..|+..|-.++..-......++....++..|+.++.+..+..++..++..+...+
T Consensus 42 ~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 114 (220)
T 1dvp_A 42 NAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWA 114 (220)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 4667888889999999999999999888765322233455566688888888865433788887777766554
No 152
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=70.77 E-value=9 Score=29.83 Aligned_cols=73 Identities=12% Similarity=0.083 Sum_probs=54.8
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhcCC-CchhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhC
Q 014945 158 AVPIFVRLLSSPTDDVREQAVWALGNVAGD-SPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 230 (415)
Q Consensus 158 ~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~-~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~ 230 (415)
++..|.+-|.+.++.++..|+..|-.+..+ .+.++..+....++..|+.++....++.++..++..+..-...
T Consensus 53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~ 126 (163)
T 1x5b_A 53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEE 126 (163)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHH
Confidence 355677778888999998999888888765 3557777777778888888885446778888887777666544
No 153
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=70.07 E-value=14 Score=30.47 Aligned_cols=74 Identities=11% Similarity=0.147 Sum_probs=56.0
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhcCCC-chhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhCC
Q 014945 158 AVPIFVRLLSSPTDDVREQAVWALGNVAGDS-PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK 231 (415)
Q Consensus 158 ~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~-~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~ 231 (415)
++..|.+-|.+.++.++..|+..|-.+..+. +.++..+....++..|..++....+..++..++..+...+...
T Consensus 46 a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f 120 (226)
T 3zyq_A 46 AVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAF 120 (226)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Confidence 4667778888899999999999888887553 3366677777778888888865567788888888777776543
No 154
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=68.08 E-value=13 Score=33.43 Aligned_cols=72 Identities=14% Similarity=0.076 Sum_probs=39.6
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHHHHHhhcCCCChHHHHHHHHHHHHHhCCC
Q 014945 73 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGT 146 (415)
Q Consensus 73 i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~ 146 (415)
+..|+..+.|.|+..+..--..|..+... ....+..+...+-..+.+++.......-..+.+++++.+..+-
T Consensus 176 i~~Ll~lfdSeDpRERd~LktiLhrIY~K--f~~~R~~Irk~i~nif~~fiye~e~~~GIaeLLeilgsIIngf 247 (392)
T 2jak_A 176 VLQLLELFDSEDPRERDFLKTTLHRIYGK--FLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGF 247 (392)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHHTSSCCCSCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcc
Confidence 45667777777777776666666665432 2333344433344556666654332333445666666666543
No 155
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=67.76 E-value=1.2e+02 Score=31.39 Aligned_cols=182 Identities=15% Similarity=0.090 Sum_probs=99.5
Q ss_pred hHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHH-----HhccCChHH
Q 014945 201 LMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALS-----YLSDGTNDK 275 (415)
Q Consensus 201 i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~-----~l~~~~~~~ 275 (415)
+..|+.+- -+...+++..|-.++......-+......+..++..|-.-+...+.+-...|+++|. ..+..+...
T Consensus 135 l~dL~~Ls-~S~Y~~VR~~AQ~~L~~~~~~~~gs~~~iip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~~~~~~d~~~ 213 (997)
T 1vsy_5 135 LVDIIQLA-TSLYPDIYKPAQGTLVHCMKQLVGSYGVVINKIIPSLEKAIKDHDYMKIQVILNVLLIKKIHRKLMTDYKD 213 (997)
T ss_dssp HHHHHHHH-TSSCHHHHHHHHHHHHHHHTTBTTHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHHHHGGGCHHH
T ss_pred HHHHHHHh-cCchHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHhhhhhhhHHhcChHH
Confidence 34455544 556778888888888888765443333333333333333333455566666666554 122222222
Q ss_pred HHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCCh------------------------HHHH-----------H
Q 014945 276 IQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD------------------------MQTQ-----------C 320 (415)
Q Consensus 276 ~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~------------------------~~~~-----------~ 320 (415)
. ..+++.|+.....+.++++..+-.+...+..+.. ...+ .
T Consensus 214 ~-----~~~~~ali~~~~~dKpsI~~l~~~l~~~i~~~~~~p~~~~~~~~~~~~~i~~~d~~i~~~~~~~~~~~~~~r~~ 288 (997)
T 1vsy_5 214 I-----GRLIFLLIECCRVNELEIGMYADKILTDIVIGIKIPSSVCVISDQAFLPLAPPDGTINLQVEAVKLAKKKKREY 288 (997)
T ss_dssp H-----HHHHHHHHHTCSCSSSSTTTHHHHHHHHHHTSCCCCCSCCCCCGGGTGGGCCSCSSTTSHHHHHHHHTTHHHHH
T ss_pred H-----HHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 1 1245566666666666666655544444432100 0000 0
Q ss_pred HHH--CCChHHHHHHhcCCCc--cchHHHHHHHHHHHhcC-----CHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHH
Q 014945 321 IIN--HQALPCLLDLLTQNYK--KSIKKEACWTISNITAG-----NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWA 391 (415)
Q Consensus 321 ~~~--~~~l~~L~~ll~~~~~--~~v~~~a~~~l~nl~~~-----~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~a 391 (415)
..+ .++...++.+.++... .+....++..+.++... +++ ++..+++.+.+++|.+|..|..+
T Consensus 289 ~~~~~~~L~~~l~~~~~~~~h~~Wk~~~~~~~~l~~l~~r~d~~~~~~---------~v~~~~~~l~~dhp~~R~~a~~~ 359 (997)
T 1vsy_5 289 YLSLLVDLQDKLLDKLDNEKDMGWKIRMFILRFVTQIQSNLESKPDKR---------AVFSIISQISTKHPEIIHLVVKS 359 (997)
T ss_dssp HHHHHHHHHHHHHHHHHSSTTCCSCHHHHHHHHHHHHTCCSSCCCCHH---------HHHHHHGGGGGCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcCCCCCCHH---------HHHHHHHhhcCCCHHHHHHHHHH
Confidence 111 1334444555534336 77888878776666642 333 45567777888999999999999
Q ss_pred HHHHhC
Q 014945 392 ISNATS 397 (415)
Q Consensus 392 L~nl~~ 397 (415)
+..+..
T Consensus 360 l~~il~ 365 (997)
T 1vsy_5 360 LLSTCN 365 (997)
T ss_dssp HTHHHH
T ss_pred HHHHHH
Confidence 877763
No 156
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=67.49 E-value=25 Score=26.45 Aligned_cols=95 Identities=7% Similarity=0.051 Sum_probs=63.9
Q ss_pred cCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCC-HHHHHHHHHcCCH
Q 014945 292 LRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN-VNQIQAIIEAGII 370 (415)
Q Consensus 292 L~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~-~~~~~~l~~~~~i 370 (415)
+..+++......|..+.. .+.... .++..+.+-|.+. ++.++..|...|-.+..++ +.....+.+..++
T Consensus 18 l~~~dw~~ileicD~I~~----~~~~~k-----~a~rai~Krl~~~-n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl 87 (140)
T 3ldz_A 18 NTAEDWGLILDICDKVGQ----SRTGPK-----DCLRSIMRRVNHK-DPHVAMQALTLLGACVSNCGKIFHLEVCSRDFA 87 (140)
T ss_dssp SSSCCHHHHHHHHHHHTT----STTHHH-----HHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHH
T ss_pred CCCcCHHHHHHHHHHHHC----CCcCHH-----HHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHH
Confidence 345666666666655542 222222 2456678888888 8998888877777777643 3333344455677
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHHh
Q 014945 371 GPLVNLLLNAEFEIKKEAAWAISNAT 396 (415)
Q Consensus 371 ~~L~~~l~~~~~~v~~~a~~aL~nl~ 396 (415)
..|..++...++.|+..++..+..-+
T Consensus 88 ~el~~l~~~~~~~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 88 SEVSNVLNKGHPKVCEKLKALMVEWT 113 (140)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 88888887788999999988887766
No 157
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=65.98 E-value=18 Score=33.04 Aligned_cols=131 Identities=12% Similarity=0.035 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHhCCCchhhHHHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhc-
Q 014945 132 QFEAAWALTNIASGTSENTRVVIDHGAVPIFVR-LLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN- 209 (415)
Q Consensus 132 ~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~-ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~- 209 (415)
+.-++.+|+-++.+.+.. +.+..++. .+.+..+..+-.++++++|+.......+..+........++..+.
T Consensus 243 ~FPaLDLLRl~v~~p~~~-------~~l~~li~~~l~~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~ 315 (425)
T 3pst_A 243 KTPAYDIVRLIVKKLPYS-------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDT 315 (425)
T ss_dssp CHHHHHHHHHHGGGCSCG-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCC
T ss_pred ccHHHHHHHHHHcCCchH-------HHHHHHHHHhcCCCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHH
Confidence 555777777666543321 22333333 344567888999999999999877633444432222455555542
Q ss_pred ------cchhHhHHHHHHHHHHHhhhCC--CCCchhhhhchHHHHHHhhc---------CCChhHHHHHHHHHHHhccCC
Q 014945 210 ------EHAKLSMLRNATWTLSNFCRGK--PQPLFEQTRPALPALERLIH---------SNDDEVLTDACWALSYLSDGT 272 (415)
Q Consensus 210 ------~~~~~~~~~~a~~~l~~l~~~~--~~~~~~~~~~~l~~l~~lL~---------~~d~~v~~~a~~~l~~l~~~~ 272 (415)
...+..++..++..+.|++... .... ..+++.+..++. ..|++....++-++++|....
T Consensus 316 ~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~~----~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~ 391 (425)
T 3pst_A 316 EFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSD----LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 391 (425)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCSC----TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHC
T ss_pred HhhhcccCCCchHHHHHHHHHHHHHHHHhcccch----HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcC
Confidence 1235667888888888888653 1111 233344555444 258889999999999998644
Q ss_pred h
Q 014945 273 N 273 (415)
Q Consensus 273 ~ 273 (415)
+
T Consensus 392 ~ 392 (425)
T 3pst_A 392 P 392 (425)
T ss_dssp H
T ss_pred H
Confidence 4
No 158
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=65.82 E-value=52 Score=27.12 Aligned_cols=77 Identities=9% Similarity=0.065 Sum_probs=53.2
Q ss_pred cHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHH
Q 014945 284 VCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQA 363 (415)
Q Consensus 284 ~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~ 363 (415)
..+.+...+.+++.-++..|+..+-......+ .. ..++.+...+.++ +.-|++..+|+|..+...+++.+..
T Consensus 132 ~~~~l~~W~~s~~~w~rR~ai~~~l~~~~~~d--~~-----~~~~~i~~~~~d~-~~yV~kAvgW~Lr~~~k~~p~~v~~ 203 (232)
T 3jxy_A 132 ISAYIPKWIASDNIWLQRAAILFQLKYKQKMD--EE-----LLFWIIGQLHSSK-EFFIQKAIGWVLREYAKTNPDVVWE 203 (232)
T ss_dssp GGGTHHHHHHSSCHHHHHHHHHTTTTCGGGCC--HH-----HHHHHHHHHTTCC-CHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHhCCC--HH-----HHHHHHHHhcCCH-HHHHHHHHHHHHHHHHhhCHHHHHH
Confidence 44667788888888888777654422211111 11 1234555677777 9999999999999999999998877
Q ss_pred HHHcC
Q 014945 364 IIEAG 368 (415)
Q Consensus 364 l~~~~ 368 (415)
+++.+
T Consensus 204 fl~~~ 208 (232)
T 3jxy_A 204 YVQNN 208 (232)
T ss_dssp HHHHS
T ss_pred HHHHC
Confidence 77653
No 159
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=65.82 E-value=26 Score=29.44 Aligned_cols=107 Identities=12% Similarity=0.027 Sum_probs=63.8
Q ss_pred hCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhc----c---chhHhHHHHHHHHHHHhhhCC-C-CCch
Q 014945 166 LSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN----E---HAKLSMLRNATWTLSNFCRGK-P-QPLF 236 (415)
Q Consensus 166 l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~----~---~~~~~~~~~a~~~l~~l~~~~-~-~~~~ 236 (415)
+.+.++..+-.++++++|+.......+..+........++..+. + ..+..++..++..+.|++... . ....
T Consensus 99 ~~~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~~~ 178 (253)
T 3gae_A 99 LGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSDL 178 (253)
T ss_dssp TTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCSCT
T ss_pred cCCCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccchH
Confidence 33456788999999999999887744555543322344444431 1 236677888888888888643 1 1111
Q ss_pred hhhhchHHHHHHhhc-----CCChhHHHHHHHHHHHhccCC
Q 014945 237 EQTRPALPALERLIH-----SNDDEVLTDACWALSYLSDGT 272 (415)
Q Consensus 237 ~~~~~~l~~l~~lL~-----~~d~~v~~~a~~~l~~l~~~~ 272 (415)
.....++..+...+. ..|++....++-+++++...+
T Consensus 179 e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~~ 219 (253)
T 3gae_A 179 ELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 219 (253)
T ss_dssp THHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCc
Confidence 222223333332211 237788888889999887543
No 160
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=65.36 E-value=20 Score=27.36 Aligned_cols=74 Identities=15% Similarity=0.037 Sum_probs=57.2
Q ss_pred hchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHH-HHHHHcCcHHHHHHhcCC------CChhhHHHHHHHHHHhhc
Q 014945 240 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKI-QAVIEAGVCPRLVELLRH------PSPSVLIPALRTVGNIVT 312 (415)
Q Consensus 240 ~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~-~~~~~~~~i~~L~~lL~~------~~~~v~~~a~~~l~nl~~ 312 (415)
..++..|.+-|++.++.++..|+..+-.+..+..... ..+.+..++..|+.++.. .+..|+..++..+...+.
T Consensus 37 k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 37 THAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 5567778888899999999999999999887766554 334455888999998864 367889888888877664
Q ss_pred C
Q 014945 313 G 313 (415)
Q Consensus 313 ~ 313 (415)
.
T Consensus 117 ~ 117 (148)
T 1mhq_A 117 W 117 (148)
T ss_dssp H
T ss_pred H
Confidence 3
No 161
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=62.89 E-value=13 Score=33.90 Aligned_cols=104 Identities=10% Similarity=0.076 Sum_probs=65.5
Q ss_pred cCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCC-------CccchHHHHHHHHHHHhcCCHHHHHHH
Q 014945 292 LRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN-------YKKSIKKEACWTISNITAGNVNQIQAI 364 (415)
Q Consensus 292 L~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~-------~~~~v~~~a~~~l~nl~~~~~~~~~~l 364 (415)
+.+..+..+..+++++.|+.....-..+.+.+....+.++..+... .+..++..++..+.|++.......
T Consensus 271 l~~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~--- 347 (425)
T 3pst_A 271 LGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGN--- 347 (425)
T ss_dssp TTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSC---
T ss_pred cCCCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhccc---
Confidence 3455678899999999999987653333332222345566655322 145678888888889986211100
Q ss_pred HHcCCHHHHHHHhc---------cCCHHHHHHHHHHHHHHhCC
Q 014945 365 IEAGIIGPLVNLLL---------NAEFEIKKEAAWAISNATSG 398 (415)
Q Consensus 365 ~~~~~i~~L~~~l~---------~~~~~v~~~a~~aL~nl~~~ 398 (415)
.+..+...+.+++. ..+++....++.||+++...
T Consensus 348 ~~~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~ 390 (425)
T 3pst_A 348 SDLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATV 390 (425)
T ss_dssp SCTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhc
Confidence 01123445555555 35889999999999999964
No 162
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=62.69 E-value=23 Score=27.03 Aligned_cols=73 Identities=15% Similarity=0.043 Sum_probs=56.9
Q ss_pred hchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHH-HHHHcCcHHHHHHhcCC------CChhhHHHHHHHHHHhhc
Q 014945 240 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQ-AVIEAGVCPRLVELLRH------PSPSVLIPALRTVGNIVT 312 (415)
Q Consensus 240 ~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~-~~~~~~~i~~L~~lL~~------~~~~v~~~a~~~l~nl~~ 312 (415)
..++..|.+-|.+.++.++..|+..+-.+..+.....+ .+.+..++..|+.++.. .+..|+..++..+...+.
T Consensus 47 k~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 47 PLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 55677888888999999999999999988877665543 34455788889988863 467888888888877764
No 163
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=61.66 E-value=16 Score=32.59 Aligned_cols=131 Identities=12% Similarity=0.036 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHhCCCchhhHHHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhc-
Q 014945 132 QFEAAWALTNIASGTSENTRVVIDHGAVPIFVR-LLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN- 209 (415)
Q Consensus 132 ~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~-ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~- 209 (415)
+.-++.+++-++.+.+. . +.+..++. .+.+..+..+-.++++++|+.......+..+........++..+.
T Consensus 180 ~FP~LDLLRl~v~~~~~-~------~~l~~li~~~~~~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~ 252 (362)
T 3l3f_X 180 KTPAYDIVRLIVKKLPY-S------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDT 252 (362)
T ss_dssp CHHHHHHHHHHGGGCSC-G------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCS
T ss_pred cchHHHHHHHHhcCCCh-H------HHHHHHHHHhcCCCChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHH
Confidence 55677777766664332 1 23333433 344567888999999999999877633444432111233444331
Q ss_pred ------cchhHhHHHHHHHHHHHhhhCC--CCCchhhhhchHHHHHHhhc---------CCChhHHHHHHHHHHHhccCC
Q 014945 210 ------EHAKLSMLRNATWTLSNFCRGK--PQPLFEQTRPALPALERLIH---------SNDDEVLTDACWALSYLSDGT 272 (415)
Q Consensus 210 ------~~~~~~~~~~a~~~l~~l~~~~--~~~~~~~~~~~l~~l~~lL~---------~~d~~v~~~a~~~l~~l~~~~ 272 (415)
...+..++..++..+.|++... .... ...++.+..++. ..|++....++-++++|....
T Consensus 253 ~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~~~----~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~~ 328 (362)
T 3l3f_X 253 EFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSD----LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 328 (362)
T ss_dssp CCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCSC----TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHC
T ss_pred HhhhcccCCCchHHHHHHHHHHHHHHHHhcccch----HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcC
Confidence 2235667888888888888643 1111 233344555554 358899999999999998544
Q ss_pred h
Q 014945 273 N 273 (415)
Q Consensus 273 ~ 273 (415)
+
T Consensus 329 ~ 329 (362)
T 3l3f_X 329 P 329 (362)
T ss_dssp H
T ss_pred H
Confidence 3
No 164
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=61.61 E-value=47 Score=25.94 Aligned_cols=95 Identities=9% Similarity=0.029 Sum_probs=66.8
Q ss_pred CCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHH-HHHHcCCHH
Q 014945 293 RHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQ-AIIEAGIIG 371 (415)
Q Consensus 293 ~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~-~l~~~~~i~ 371 (415)
..+++......|..+..=. .... .++..|.+-+.+. ++.++..|..+|-.+..++..... .+.+..++.
T Consensus 27 ~~~Dw~~ileicD~I~~~~----~~~k-----~A~ral~krl~~~-n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~ 96 (171)
T 1juq_A 27 RQEDWEYIIGFCDQINKEL----EGPQ-----IAVRLLAHKIQSP-QEWEALQALTVLEACMKNCGRRFHNEVGKFRFLN 96 (171)
T ss_dssp SSCCHHHHHHHHHHHHHST----THHH-----HHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHH
T ss_pred CCcCHHHHHHHHHHHHcCC----ccHH-----HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHH
Confidence 3566766666666665432 1222 2355688888888 999999999988888876555444 455677889
Q ss_pred HHHHHhcc------CCHHHHHHHHHHHHHHhC
Q 014945 372 PLVNLLLN------AEFEIKKEAAWAISNATS 397 (415)
Q Consensus 372 ~L~~~l~~------~~~~v~~~a~~aL~nl~~ 397 (415)
.|+.++.. .+..|+..++..+..-+.
T Consensus 97 eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 97 ELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 99998862 467999998888887763
No 165
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=61.13 E-value=30 Score=28.37 Aligned_cols=73 Identities=7% Similarity=0.098 Sum_probs=54.1
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhcCCC-chhHHHHHhcCChHHHHHHhccchhHhHHHHHHHHHHHhhhC
Q 014945 158 AVPIFVRLLSSPTDDVREQAVWALGNVAGDS-PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 230 (415)
Q Consensus 158 ~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~-~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~ 230 (415)
++..|.+-|.+.++.++..|+..|-.+..+. +.++..+....++..|..++.+..+..++..++..+..-...
T Consensus 43 a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~ 116 (220)
T 1dvp_A 43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYA 116 (220)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Confidence 3566777788899999999999999888664 446677777778888888885555677887777666555543
No 166
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=60.23 E-value=8 Score=32.68 Aligned_cols=101 Identities=9% Similarity=0.086 Sum_probs=61.7
Q ss_pred CCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCC-------CccchHHHHHHHHHHHhcCCHHHHHHHHH
Q 014945 294 HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN-------YKKSIKKEACWTISNITAGNVNQIQAIIE 366 (415)
Q Consensus 294 ~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~-------~~~~v~~~a~~~l~nl~~~~~~~~~~l~~ 366 (415)
+.++..+.-+++++.|+..+..-..+.+.++...+.++..+.+. .+..++-.++..+.|++........ +
T Consensus 101 ~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~---~ 177 (253)
T 3gae_A 101 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---D 177 (253)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS---C
T ss_pred CCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc---h
Confidence 45677899999999999987662333333322334444443221 1456888888888899862110000 1
Q ss_pred cCCHHHHHHHhc---------cCCHHHHHHHHHHHHHHhC
Q 014945 367 AGIIGPLVNLLL---------NAEFEIKKEAAWAISNATS 397 (415)
Q Consensus 367 ~~~i~~L~~~l~---------~~~~~v~~~a~~aL~nl~~ 397 (415)
......+++.+. ..+++....++.||+++..
T Consensus 178 ~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~ 217 (253)
T 3gae_A 178 LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 217 (253)
T ss_dssp TTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHh
Confidence 123344555444 2378899999999999985
No 167
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=59.48 E-value=12 Score=33.31 Aligned_cols=104 Identities=10% Similarity=0.076 Sum_probs=63.9
Q ss_pred cCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcCC-------CccchHHHHHHHHHHHhcCCHHHHHHH
Q 014945 292 LRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN-------YKKSIKKEACWTISNITAGNVNQIQAI 364 (415)
Q Consensus 292 L~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~~-------~~~~v~~~a~~~l~nl~~~~~~~~~~l 364 (415)
+.+..+..+..+++++.|+..+..-..+.+.+....+.++..+... .+..++..++..+.|++.......
T Consensus 208 ~~~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~--- 284 (362)
T 3l3f_X 208 LGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGN--- 284 (362)
T ss_dssp TTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred cCCCChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhccc---
Confidence 3355678899999999999987652333332211233444444211 145678888888889986211100
Q ss_pred HHcCCHHHHHHHhc---------cCCHHHHHHHHHHHHHHhCC
Q 014945 365 IEAGIIGPLVNLLL---------NAEFEIKKEAAWAISNATSG 398 (415)
Q Consensus 365 ~~~~~i~~L~~~l~---------~~~~~v~~~a~~aL~nl~~~ 398 (415)
.+..+...+.+++. ..+++....++.||+++...
T Consensus 285 ~~~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~ 327 (362)
T 3l3f_X 285 SDLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATV 327 (362)
T ss_dssp SCTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhc
Confidence 01223455666665 35889999999999999964
No 168
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=56.74 E-value=20 Score=27.62 Aligned_cols=74 Identities=9% Similarity=-0.019 Sum_probs=51.0
Q ss_pred ccHHHHHHhhc-CCCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHH-HHHhhcCCC--ChHHHHHHHHHHHHHhC
Q 014945 71 ESLPAMVAGVW-SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPR-FIEFLSRDD--FPQLQFEAAWALTNIAS 144 (415)
Q Consensus 71 ~~i~~l~~~l~-~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~-L~~ll~~~~--~~~i~~~a~~~L~~l~~ 144 (415)
+++..+.+.|+ +.++.++..|+..|-.+..........++....++.. |++++.... ...++..++..+...+.
T Consensus 53 ~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~ 130 (157)
T 1elk_A 53 DALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWAD 130 (157)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHH
Confidence 46677888887 4789999999999888876543333345666778887 788875321 15788887777765543
No 169
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=52.90 E-value=27 Score=26.23 Aligned_cols=39 Identities=18% Similarity=0.050 Sum_probs=34.5
Q ss_pred CHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCHHHHHHH
Q 014945 369 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKYK 407 (415)
Q Consensus 369 ~i~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l 407 (415)
+++.|.+-|.+.++.++..|+..|..|+..|+..+...+
T Consensus 50 im~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~ 88 (140)
T 1vdy_A 50 FSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREM 88 (140)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHH
T ss_pred HHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHH
Confidence 577888889999999999999999999999998887766
No 170
>3gjx_B Snurportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Homo sapiens} PDB: 3nby_B* 3nbz_B* 3nc0_B* 3gb8_B 2qna_B
Probab=48.74 E-value=3.2 Score=36.48 Aligned_cols=43 Identities=28% Similarity=0.390 Sum_probs=28.6
Q ss_pred ccHHHhhhccC-CCCchHHHHhHHHHHHHHHHHhhhHHHHhhhhcc
Q 014945 8 RTEVRRSKYKV-AVDAEEGRRRREDNMVEIRKNKREESLLKKRREG 52 (415)
Q Consensus 8 ~~~~~~~~~k~-~~~~~~~r~~r~~~~~~lRk~~r~~~~~~~R~~~ 52 (415)
.+.+|...||+ +...++. +|++...+..|++|.+.+...|+..
T Consensus 28 a~HPR~sqyK~k~~~~~Q~--~RR~~~Le~QK~kR~d~~~haR~La 71 (365)
T 3gjx_B 28 APHPRLSQYKSKYSSLEQS--ERRRRLLELQKSKRLDYVNHARRLA 71 (365)
T ss_dssp SCCGGGCC---CTTCCSCC--HHHHHHHHHTCCCCSCHHHHHHHHH
T ss_pred CCCcchhhcccccchhhHH--HHHHHHHHHHHHHHHHHHHHhcccc
Confidence 66799999998 4443433 3334667788888999999999864
No 171
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=42.25 E-value=1.4e+02 Score=29.94 Aligned_cols=118 Identities=9% Similarity=0.055 Sum_probs=70.9
Q ss_pred hHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhcc--chhHhHHHHHHHHHHHh
Q 014945 150 TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE--HAKLSMLRNATWTLSNF 227 (415)
Q Consensus 150 ~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~--~~~~~~~~~a~~~l~~l 227 (415)
++.+++ -..|.+...+.+.+..+...+..+|.+||.-.|.+++.++. ++++.+..-|.. -..+.-...++.++..+
T Consensus 333 ~~~fV~-~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP-~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~ 410 (799)
T 1vsy_4 333 HEEIVE-IFLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLIYD-KILIDLYDTLADQFINSRHRIISSLKQFTRV 410 (799)
T ss_dssp HHHHHH-HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHHH-HHHHHHHHHHTTTTTTCHHHHHHHHHHHHTT
T ss_pred HHHHHH-HHHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCccceehH-HHHHHHHHHhccccccchhHHHHHHHHHHHH
Confidence 344443 24566666778889999999999999999877755455432 244444444522 23444555666666666
Q ss_pred hhCCCC--CchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhc
Q 014945 228 CRGKPQ--PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLS 269 (415)
Q Consensus 228 ~~~~~~--~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~ 269 (415)
++.-.. .-...+..++..++..+..+|+.--..++..+..++
T Consensus 411 ~r~lv~~~~yr~hl~~lL~l~LpgID~ND~~KT~~tl~fi~~i~ 454 (799)
T 1vsy_4 411 IRFIVMDKLYRVHITNVLSMLVSKLDMNDTNLTSNLINGIVSIA 454 (799)
T ss_dssp HHHHTTSTTGGGHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHH
T ss_pred HHHHhcCcccHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHH
Confidence 643211 111233455666666777788776666666665553
No 172
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=40.31 E-value=1.6e+02 Score=24.61 Aligned_cols=69 Identities=19% Similarity=0.200 Sum_probs=50.6
Q ss_pred hhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhh
Q 014945 238 QTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV 311 (415)
Q Consensus 238 ~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~ 311 (415)
....+++.++.+..+.+.+++.-.+..+...+....+.. ..+++.|..+|.++++.+...++.+.+++-
T Consensus 50 ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~-----~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY 118 (257)
T 3gs3_A 50 LAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELL-----PHVINVVSMLLRDNSAQVIKRVIQACGSIY 118 (257)
T ss_dssp GHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 556778888887777788899888888887774444322 235677888888888888888887776653
No 173
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=38.40 E-value=1.5e+02 Score=23.65 Aligned_cols=128 Identities=13% Similarity=0.116 Sum_probs=77.6
Q ss_pred ChHHHHHHhcc-----chhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCC---ChhHHHHHHHHHHHhccC
Q 014945 200 ALMPLLAQFNE-----HAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSN---DDEVLTDACWALSYLSDG 271 (415)
Q Consensus 200 ~i~~L~~~l~~-----~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~---d~~v~~~a~~~l~~l~~~ 271 (415)
.+|.++..+.+ -.+.......+.....|..++.-........++|.++.++-.. ...+|..|+..++.++..
T Consensus 41 LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~ 120 (196)
T 4atg_A 41 LVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDT 120 (196)
T ss_dssp THHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHH
Confidence 46666666532 2366777888888888888866555666788888888776322 237999999999999853
Q ss_pred ChHHHHHHHHcCcHHHHHHhcCCCC--hhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhc
Q 014945 272 TNDKIQAVIEAGVCPRLVELLRHPS--PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLT 335 (415)
Q Consensus 272 ~~~~~~~~~~~~~i~~L~~lL~~~~--~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~ 335 (415)
...... -+...+...+.+.+.+++ ....--|+..|+.+.. +. +..-++|.+-.+.+
T Consensus 121 ~~~~y~-~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~lG~---~~----vr~~llP~l~~~~~ 178 (196)
T 4atg_A 121 YSRSYK-TLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSILSK---NV----VNTVIREHAEEYKR 178 (196)
T ss_dssp HTTTST-THHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCH---HH----HHTHHHHHHHHHHH
T ss_pred hCccCc-hHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHhHH---HH----HHHhhhcCHHHHHH
Confidence 221111 122345666776665543 3445556666665543 22 23334466655553
No 174
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=35.89 E-value=80 Score=23.76 Aligned_cols=70 Identities=6% Similarity=-0.032 Sum_probs=50.2
Q ss_pred ChHHHHHHhcCCCccchHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHhccCCHHHHHHHHHHHHHHh
Q 014945 326 ALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT 396 (415)
Q Consensus 326 ~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a~~aL~nl~ 396 (415)
++..+.+.+... .+.-+-.+.+++-.++.+...........++.+.+.+.....++.++......+.---
T Consensus 44 Iv~~i~~~i~k~-~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~f~~~~~~~d~~~r~k~~rL~~~W~ 113 (144)
T 1sz9_A 44 FVDAIESRIEKC-MPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYLLVDNTTRTKLINMFKLWL 113 (144)
T ss_dssp HHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhccC-CHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 344566666666 7788888889998888732222346667778888888888788888887777666555
No 175
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=35.45 E-value=56 Score=27.00 Aligned_cols=76 Identities=9% Similarity=0.073 Sum_probs=52.0
Q ss_pred HHHHHHhcCCCChhhHHHHHH----HHHHhhcC--ChHHHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhcCCH
Q 014945 285 CPRLVELLRHPSPSVLIPALR----TVGNIVTG--DDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV 358 (415)
Q Consensus 285 i~~L~~lL~~~~~~v~~~a~~----~l~nl~~~--~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~~~~ 358 (415)
.+.+...+.+++.-.+..+.. .++.+... .+.... .+++.+...+.++ +..|++...|+|..+...++
T Consensus 110 ~~~~~~W~~s~~~w~rR~ai~~q~~ll~~~~~k~~~~~~~~-----~~l~~i~~~l~~~-~~~v~kAi~W~Lr~~gk~~~ 183 (235)
T 1t06_A 110 QDVADKWIASGDELKMSAGWSCYCWLLGNRKDNAFSESKIS-----DMLEMVKDTIHHS-PERTKSAMNNFLNTVAISYV 183 (235)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHHHHSCGGGSCHHHHH-----HHHHHHHHHGGGS-CHHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHHHhhccccCcChhhHH-----HHHHHHHHHccCC-hHHHHHHHHHHHHHHHhhCH
Confidence 355677778888878877777 55553211 222232 2355666688888 99999999999999998777
Q ss_pred HHHHHHHH
Q 014945 359 NQIQAIIE 366 (415)
Q Consensus 359 ~~~~~l~~ 366 (415)
+.....++
T Consensus 184 ~~~~~al~ 191 (235)
T 1t06_A 184 PLHEKAVE 191 (235)
T ss_dssp GGHHHHHH
T ss_pred HHHHHHHH
Confidence 76655554
No 176
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=35.29 E-value=1.2e+02 Score=24.34 Aligned_cols=111 Identities=14% Similarity=0.109 Sum_probs=63.2
Q ss_pred ChHHHHHhhCC------CCHHHHHHHHHHHHHhcCCCchhHHHHHhcCChHHHHHHhccch--hHhHHHHHHHHHHHhhh
Q 014945 158 AVPIFVRLLSS------PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA--KLSMLRNATWTLSNFCR 229 (415)
Q Consensus 158 ~i~~L~~ll~~------~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~~l~~~~--~~~~~~~a~~~l~~l~~ 229 (415)
.+|.+++++.+ .+.......+.....|..+..-.-+.. -+..+++++.++-... ...+++.|+..+..+|.
T Consensus 41 LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepY-lH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~ 119 (196)
T 4atg_A 41 LVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPY-LHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYD 119 (196)
T ss_dssp THHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGG-HHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHH-HHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHH
Confidence 46666665532 355555555555555554332111111 1115666776652211 22799999999999998
Q ss_pred CCCCCchhhhhchHHHHHHhhcCC--ChhHHHHHHHHHHHhc
Q 014945 230 GKPQPLFEQTRPALPALERLIHSN--DDEVLTDACWALSYLS 269 (415)
Q Consensus 230 ~~~~~~~~~~~~~l~~l~~lL~~~--d~~v~~~a~~~l~~l~ 269 (415)
............+...+.+.+.++ +.....-|+..+..+.
T Consensus 120 ~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~lG 161 (196)
T 4atg_A 120 TYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSILS 161 (196)
T ss_dssp HHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC
T ss_pred HhCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHhH
Confidence 754333333455666666666554 4566777777777765
No 177
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=32.93 E-value=42 Score=19.59 Aligned_cols=18 Identities=33% Similarity=0.562 Sum_probs=14.2
Q ss_pred HHHHhHHHHHHHHHHHhh
Q 014945 24 EGRRRREDNMVEIRKNKR 41 (415)
Q Consensus 24 ~~r~~r~~~~~~lRk~~r 41 (415)
+.|++.++..-.+||.++
T Consensus 11 ~~Rkk~eeler~lrk~kk 28 (50)
T 1a92_A 11 SGRKKLEELERDLRKLKK 28 (50)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 457888888888888776
No 178
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=28.40 E-value=1.9e+02 Score=21.66 Aligned_cols=97 Identities=12% Similarity=0.119 Sum_probs=62.1
Q ss_pred CCCChhhHHHHHHHHHHhhcCChH-HHHHHHHCCChHHHHHHhcCCCccchHHHHHHHHHHHhc-CCHHHHHHHHHcCCH
Q 014945 293 RHPSPSVLIPALRTVGNIVTGDDM-QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA-GNVNQIQAIIEAGII 370 (415)
Q Consensus 293 ~~~~~~v~~~a~~~l~nl~~~~~~-~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~l~nl~~-~~~~~~~~l~~~~~i 370 (415)
+++++..-...+.=|++++...+. ... .+++.|.+-|.+. ++.++..|..+|-.++. |++..+..+..+ .
T Consensus 21 s~d~~~~pgylm~EIA~~T~~s~~~~~~-----eim~~L~kRL~~k-~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~-~- 92 (140)
T 1vdy_A 21 SDEDKVAPVYKLEEICDLLRSSHVSIVK-----EFSEFILKRLDNK-SPIVKQKALRLIKYAVGKSGSEFRREMQRN-S- 92 (140)
T ss_dssp CSCSSCCCHHHHHHHHHHHHHSCHHHHH-----HHHHHHHHHHTSS-SHHHHHHHHHHHHHHTTTSCHHHHHHHHHT-T-
T ss_pred cCCCCCCcHHHHHHHHHHHHhcchhHHH-----HHHHHHHHHhcCC-CcceeehHHHHHHHHHHhCCHHHHHHHHHh-H-
Confidence 334444444555556666654432 223 3466889999888 88999999999999997 777777776654 2
Q ss_pred HHHHHHhcc----CC--------HHHHHHHHHHHHHHhCC
Q 014945 371 GPLVNLLLN----AE--------FEIKKEAAWAISNATSG 398 (415)
Q Consensus 371 ~~L~~~l~~----~~--------~~v~~~a~~aL~nl~~~ 398 (415)
..++.+.+ ++ ..||..|-.++.-+...
T Consensus 93 -~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll~d~ 131 (140)
T 1vdy_A 93 -VAVRNLFHYKGHPDPLKGDALNKAVRETAHETISAIFSE 131 (140)
T ss_dssp -HHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHHTCC
T ss_pred -HHHHHHHhcCCCCCcccccchhHHHHHHHHHHHHHHhCc
Confidence 22333321 22 35888888877777644
No 179
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=25.18 E-value=71 Score=24.35 Aligned_cols=74 Identities=5% Similarity=-0.025 Sum_probs=46.3
Q ss_pred ccHHHHHHhhcC-CCHHHHHHHHHHHHHHhccCCCCchhHHHhcCchHH-HHHhhcCC--CChHHHHHHHHHHHHHhC
Q 014945 71 ESLPAMVAGVWS-DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPR-FIEFLSRD--DFPQLQFEAAWALTNIAS 144 (415)
Q Consensus 71 ~~i~~l~~~l~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~i~~-L~~ll~~~--~~~~i~~~a~~~L~~l~~ 144 (415)
+++..+.+.|++ .++..+..|+..|-.+........-.++....++.. |+++++.. ....++..++..+...+.
T Consensus 53 eA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~ 130 (152)
T 3rru_A 53 DAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQ 130 (152)
T ss_dssp HHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHH
Confidence 356677777774 577777888887777765442233334444455553 66666542 214688888888877775
No 180
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=24.24 E-value=2e+02 Score=21.54 Aligned_cols=86 Identities=8% Similarity=-0.039 Sum_probs=53.7
Q ss_pred hhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHh
Q 014945 255 DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLL 334 (415)
Q Consensus 255 ~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll 334 (415)
+.|..-..|++.+.- ... .++..+...+....+.-+.+++..+-.++..........+..++.+.+....
T Consensus 25 ~~I~~LT~~a~~~~~-----~a~-----~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~f~~~~ 94 (144)
T 1sz9_A 25 PIITTLTKLAEENIS-----CAQ-----YFVDAIESRIEKCMPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTY 94 (144)
T ss_dssp HHHHHHHHHHHHTGG-----GHH-----HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH-----HHH-----HHHHHHHHHhccCCHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence 445555556665432 111 2345566666667788888999998888875433344566777777777777
Q ss_pred cCCCccchHHHHHHHHH
Q 014945 335 TQNYKKSIKKEACWTIS 351 (415)
Q Consensus 335 ~~~~~~~v~~~a~~~l~ 351 (415)
... ++.+|......+.
T Consensus 95 ~~~-d~~~r~k~~rL~~ 110 (144)
T 1sz9_A 95 LLV-DNTTRTKLINMFK 110 (144)
T ss_dssp HTS-CHHHHHHHHHHHH
T ss_pred HhC-CHHHHHHHHHHHH
Confidence 665 6666665554443
No 181
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=23.18 E-value=2.5e+02 Score=21.32 Aligned_cols=95 Identities=7% Similarity=0.004 Sum_probs=61.6
Q ss_pred CCCChhhHHHHHHHHHHhhcCChHHHHHHHHCCChHHHHHHhcC-CCccchHHHHHHHHHHHhcCC-HHHHHHHHHcCCH
Q 014945 293 RHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQ-NYKKSIKKEACWTISNITAGN-VNQIQAIIEAGII 370 (415)
Q Consensus 293 ~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~~v~~~a~~~l~nl~~~~-~~~~~~l~~~~~i 370 (415)
.++++......|..+..= +.... .++..|.+-|++ . ++.++..|...|-.+..++ +.....+.+..++
T Consensus 30 ~~~Dw~~~leicD~I~~~----~~~~k-----~a~ral~krl~~~~-n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl 99 (157)
T 1elk_A 30 QSEDWALNMEICDIINET----EEGPK-----DALRAVKKRIVGNK-NFHEVMLALTVLETCVKNCGHRFHVLVASQDFV 99 (157)
T ss_dssp SSCCHHHHHHHHHHHHHS----SSHHH-----HHHHHHHHHHTTCC-CHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHH
T ss_pred CCcCHHHHHHHHHHHhCC----CccHH-----HHHHHHHHHhccCC-CHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHH
Confidence 456676666666655431 11222 235567777874 5 7888888888888887743 4444445566788
Q ss_pred HH-HHHHhcc---CCHHHHHHHHHHHHHHhC
Q 014945 371 GP-LVNLLLN---AEFEIKKEAAWAISNATS 397 (415)
Q Consensus 371 ~~-L~~~l~~---~~~~v~~~a~~aL~nl~~ 397 (415)
.. |+.++.. .+..|+..++..+..-+.
T Consensus 100 ~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~ 130 (157)
T 1elk_A 100 ESVLVRTILPKNNPPTIVHDKVLNLIQSWAD 130 (157)
T ss_dssp HHHTHHHHSTTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCCcHHHHHHHHHHHHHHHH
Confidence 87 7888742 345899888887777663
No 182
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=22.31 E-value=3.2e+02 Score=22.23 Aligned_cols=141 Identities=8% Similarity=-0.056 Sum_probs=82.4
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhcC-CCchhHHHHHhcCChHHHHHHhccchhHhHHHHHH-HHHHHhhhCCCCCchhh
Q 014945 161 IFVRLLSSPTDDVREQAVWALGNVAG-DSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNAT-WTLSNFCRGKPQPLFEQ 238 (415)
Q Consensus 161 ~L~~ll~~~~~~v~~~a~~~L~nl~~-~~~~~~~~~~~~g~i~~L~~~l~~~~~~~~~~~a~-~~l~~l~~~~~~~~~~~ 238 (415)
.+..+..++..+.+-.|+..+..... ..+. .++.+-..+...++-++....+ .++..+....+
T Consensus 65 ~~~~L~~~~~~E~r~~ai~~l~~~~k~~~~~---------~l~~~~~~l~~~~nWd~~D~~a~~~~g~~~~~~p------ 129 (232)
T 3jxy_A 65 IIRELWDLPEREFQAAALDIMQKYKKHINET---------HIPFLEELIVTKSWWDSVDSIVPTFLGDIFLKHP------ 129 (232)
T ss_dssp HHHHHHTSSBHHHHHHHHHHHHHTGGGCCGG---------GHHHHHHHHTSSCCHHHHHHHTTTHHHHHHHHCG------
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHHHhCCHH---------HHHHHHHHHccCCChHHHHHhhHHHHHHHHHHCH------
Confidence 44556677777777777777764321 1111 2233334443344555554442 34444443322
Q ss_pred hhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHcCcHHHHHHhcCCCChhhHHHHHHHHHHhhcCChHHH
Q 014945 239 TRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQT 318 (415)
Q Consensus 239 ~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~ 318 (415)
....+.+.....+++.-++..++-.+.......+ .. .....+...+.+++.-|+....|+|..+....++.+
T Consensus 130 -~~~~~~l~~W~~s~~~w~rR~ai~~~l~~~~~~d--~~-----~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~~p~~v 201 (232)
T 3jxy_A 130 -ELISAYIPKWIASDNIWLQRAAILFQLKYKQKMD--EE-----LLFWIIGQLHSSKEFFIQKAIGWVLREYAKTNPDVV 201 (232)
T ss_dssp -GGGGGTHHHHHHSSCHHHHHHHHHTTTTCGGGCC--HH-----HHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTCHHHH
T ss_pred -HHHHHHHHHHhcCCchHHHHHHHHHHHHHHhCCC--HH-----HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhCHHHH
Confidence 1245667788888888888777655422221111 11 123456667788889999999999999999888766
Q ss_pred HHHHHC
Q 014945 319 QCIINH 324 (415)
Q Consensus 319 ~~~~~~ 324 (415)
..+++.
T Consensus 202 ~~fl~~ 207 (232)
T 3jxy_A 202 WEYVQN 207 (232)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655553
No 183
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=21.25 E-value=1.2e+02 Score=22.25 Aligned_cols=60 Identities=7% Similarity=0.031 Sum_probs=39.1
Q ss_pred hHHHHHHhccchhHhHHHHHHHHHHHhhhCCCCCchhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhcc
Q 014945 201 LMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSD 270 (415)
Q Consensus 201 i~~L~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~lL~~~d~~v~~~a~~~l~~l~~ 270 (415)
+...++-| ..+...+.....|++.+.-.. ..++..+.+.+....++-+...+..+..++.
T Consensus 10 l~~~L~~L-~~s~~sI~~~s~w~l~h~~~a---------~~Iv~~i~~~l~~~~~~~KL~~LYL~ndIl~ 69 (132)
T 4flb_A 10 LDRKFQSV-TNTMESIQGLSSWCIENKKHH---------STIVYHWMKWLRRSAYPHRLNLFYLANDVIQ 69 (132)
T ss_dssp HHHHHHHC-CSSHHHHHHHHHHHHHTGGGH---------HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHC-cccHHHHHHHHHHHHHhHHHH---------HHHHHHHHHHHHcCChhhHHHHHHHHHHHHH
Confidence 34455555 456777888889998875322 3455666666666677767777777666653
Done!