BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014946
(415 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VO8|A Chain A, Staphylococcus Aureus Ftsz Gdp-Form
pdb|3VO8|B Chain B, Staphylococcus Aureus Ftsz Gdp-Form
Length = 392
Score = 283 bits (723), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 147/287 (51%), Positives = 194/287 (67%)
Query: 76 RMIGSGLQGVDFYAINTDSQALLQSAAENPLQIXXXXXXXXXXXXXXXXXEQAAEESKEV 135
RMI G+ V+F AINTD QAL S AE+ +QI ++AAEES+E
Sbjct: 31 RMIDHGMNNVEFIAINTDGQALNLSKAESKIQIGEKLTRGLGAGANPEIGKKAAEESREQ 90
Query: 136 IANALKGSDLVFIXXXXXXXXXXXXXPVVAQIAKEAGYLTVGVVTYPFSFEGRKRSSQAL 195
I +A++G+D+VF+ PVVA+IAKE G LTVGVVT PFSFEGRKR +QA
Sbjct: 91 IEDAIQGADMVFVTSGMGGGTGTGAAPVVAKIAKEMGALTVGVVTRPFSFEGRKRQTQAA 150
Query: 196 EAIERLQKNVDTLIVIPNDRLLDITDEQTALQDAFLLADDVLRQGVQGISDIITIPGLVN 255
+E ++ VDTLIVIPNDRLLDI D+ T + +AF AD+VLRQGVQGISD+I + G VN
Sbjct: 151 AGVEAMKAAVDTLIVIPNDRLLDIVDKSTPMMEAFKEADNVLRQGVQGISDLIAVSGEVN 210
Query: 256 VDFADVKAVMKDSGTAMLGVGVSSSKNRAEEAAEQATLAPLIGSSIQSATGVVYNITGGK 315
+DFADVK +M + G+A++G+GVSS +NRA EAA++A +PL+ +SI A GV+ NITGG+
Sbjct: 211 LDFADVKTIMSNQGSALMGIGVSSGENRAVEAAKKAISSPLLETSIVGAQGVLMNITGGE 270
Query: 316 DITLQEVNRVSQVVTSLADPSANIIFGAVVDDRYNGEIHVTIIATGF 362
++L E + +V AD N+IFG V++ EI VT+IATGF
Sbjct: 271 SLSLFEAQEAADIVQDAADEDVNMIFGTVINPELQDEIVVTVIATGF 317
>pdb|2VAM|A Chain A, Ftsz B. Subtilis
pdb|2VXY|A Chain A, The Structure Of Ftsz From Bacillus Subtilis At 1.7a
Resolution
Length = 382
Score = 283 bits (723), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 146/300 (48%), Positives = 206/300 (68%), Gaps = 2/300 (0%)
Query: 76 RMIGSGLQGVDFYAINTDSQALLQSAAENPLQIXXXXXXXXXXXXXXXXXEQAAEESKEV 135
RMI + +QGV++ A+NTD+QAL S AE +QI ++AAEESKE
Sbjct: 29 RMIENEVQGVEYIAVNTDAQALNLSKAEVKMQIGAKLTRGLGAGANPEVGKKAAEESKEQ 88
Query: 136 IANALKGSDLVFIXXXXXXXXXXXXXPVVAQIAKEAGYLTVGVVTYPFSFEGRKRSSQAL 195
I ALKG+D+VF+ PV+AQIAK+ G LTVGVVT PF+FEGRKR QA
Sbjct: 89 IEEALKGADMVFVTAGMGGGTGTGAAPVIAQIAKDLGALTVGVVTRPFTFEGRKRQLQAA 148
Query: 196 EAIERLQKNVDTLIVIPNDRLLDITDEQTALQDAFLLADDVLRQGVQGISDIITIPGLVN 255
I +++ VDTLIVIPNDR+L+I D+ T + +AF AD+VLRQGVQGISD+I PGL+N
Sbjct: 149 GGISAMKEAVDTLIVIPNDRILEIVDKNTPMLEAFREADNVLRQGVQGISDLIATPGLIN 208
Query: 256 VDFADVKAVMKDSGTAMLGVGVSSSKNRAEEAAEQATLAPLIGSSIQSATGVVYNITGGK 315
+DFADVK +M + G+A++G+G+++ +NRA EAA++A +PL+ ++I A GV+ NITGG
Sbjct: 209 LDFADVKTIMSNKGSALMGIGIATGENRAAEAAKKAISSPLLEAAIDGAQGVLMNITGGT 268
Query: 316 DITLQEVNRVSQVVTSLADPSANIIFGAVVDDRYNGEIHVTIIATGFSQSFQKTLLTNPK 375
+++L EV + +V S +D N+IFG+V+++ EI VT+IATGF + Q+ +T P+
Sbjct: 269 NLSLYEVQEAADIVASASDQDVNMIFGSVINENLKDEIVVTVIATGFIE--QEKDVTKPQ 326
>pdb|4DXD|A Chain A, Staphylococcal Aureus Ftsz In Complex With 723
Length = 396
Score = 283 bits (723), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 147/287 (51%), Positives = 194/287 (67%)
Query: 76 RMIGSGLQGVDFYAINTDSQALLQSAAENPLQIXXXXXXXXXXXXXXXXXEQAAEESKEV 135
RMI G+ V+F AINTD QAL S AE+ +QI ++AAEES+E
Sbjct: 35 RMIDHGMNNVEFIAINTDGQALNLSKAESKIQIGEKLTRGLGAGANPEIGKKAAEESREQ 94
Query: 136 IANALKGSDLVFIXXXXXXXXXXXXXPVVAQIAKEAGYLTVGVVTYPFSFEGRKRSSQAL 195
I +A++G+D+VF+ PVVA+IAKE G LTVGVVT PFSFEGRKR +QA
Sbjct: 95 IEDAIQGADMVFVTSGMGGGTGTGAAPVVAKIAKEMGALTVGVVTRPFSFEGRKRQTQAA 154
Query: 196 EAIERLQKNVDTLIVIPNDRLLDITDEQTALQDAFLLADDVLRQGVQGISDIITIPGLVN 255
+E ++ VDTLIVIPNDRLLDI D+ T + +AF AD+VLRQGVQGISD+I + G VN
Sbjct: 155 AGVEAMKAAVDTLIVIPNDRLLDIVDKSTPMMEAFKEADNVLRQGVQGISDLIAVSGEVN 214
Query: 256 VDFADVKAVMKDSGTAMLGVGVSSSKNRAEEAAEQATLAPLIGSSIQSATGVVYNITGGK 315
+DFADVK +M + G+A++G+GVSS +NRA EAA++A +PL+ +SI A GV+ NITGG+
Sbjct: 215 LDFADVKTIMSNQGSALMGIGVSSGENRAVEAAKKAISSPLLETSIVGAQGVLMNITGGE 274
Query: 316 DITLQEVNRVSQVVTSLADPSANIIFGAVVDDRYNGEIHVTIIATGF 362
++L E + +V AD N+IFG V++ EI VT+IATGF
Sbjct: 275 SLSLFEAQEAADIVQDAADEDVNMIFGTVINPELQDEIVVTVIATGF 321
>pdb|2RHH|A Chain A, Synthetic Gene Encoded Bacillus Subtilis Ftsz With Bound
Sulfate Ion
pdb|2RHJ|A Chain A, Synthetic Gene Encoded Bacillus Subtilis Ftsz With Two
Sulfate Ions And Sodium Ion In The Nucleotide Pocket
pdb|2RHL|A Chain A, Synthetic Gene Encoded Bacillus Subtilis Ftsz Ncs Dimer
With Bound Gdp
pdb|2RHL|B Chain B, Synthetic Gene Encoded Bacillus Subtilis Ftsz Ncs Dimer
With Bound Gdp
pdb|2RHO|A Chain A, Synthetic Gene Encoded Bacillus Subtilis Ftsz Ncs Dimer
With Bound Gdp And Gtp-Gamma-S
pdb|2RHO|B Chain B, Synthetic Gene Encoded Bacillus Subtilis Ftsz Ncs Dimer
With Bound Gdp And Gtp-Gamma-S
Length = 325
Score = 281 bits (720), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 143/291 (49%), Positives = 201/291 (69%)
Query: 76 RMIGSGLQGVDFYAINTDSQALLQSAAENPLQIXXXXXXXXXXXXXXXXXEQAAEESKEV 135
RMI + +QGV++ A+NTD+QAL S AE +QI ++AAEESKE
Sbjct: 19 RMIENEVQGVEYIAVNTDAQALNLSKAEVKMQIGAKLTRGLGAGANPEVGKKAAEESKEQ 78
Query: 136 IANALKGSDLVFIXXXXXXXXXXXXXPVVAQIAKEAGYLTVGVVTYPFSFEGRKRSSQAL 195
I ALKG+D+VF+ PV+AQIAK+ G LTVGVVT PF+FEGRKR QA
Sbjct: 79 IEEALKGADMVFVTAGMGGGTGTGAAPVIAQIAKDLGALTVGVVTRPFTFEGRKRQLQAA 138
Query: 196 EAIERLQKNVDTLIVIPNDRLLDITDEQTALQDAFLLADDVLRQGVQGISDIITIPGLVN 255
I +++ VDTLIVIPNDR+L+I D+ T + +AF AD+VLRQGVQGISD+I PGL+N
Sbjct: 139 GGISAMKEAVDTLIVIPNDRILEIVDKNTPMLEAFREADNVLRQGVQGISDLIATPGLIN 198
Query: 256 VDFADVKAVMKDSGTAMLGVGVSSSKNRAEEAAEQATLAPLIGSSIQSATGVVYNITGGK 315
+DFADVK +M + G+A++G+G+++ +NRA EAA++A +PL+ ++I A GV+ NITGG
Sbjct: 199 LDFADVKTIMSNKGSALMGIGIATGENRAAEAAKKAISSPLLEAAIDGAQGVLMNITGGT 258
Query: 316 DITLQEVNRVSQVVTSLADPSANIIFGAVVDDRYNGEIHVTIIATGFSQSF 366
+++L EV + +V S +D N+IFG+V+++ EI VT+IATGF ++
Sbjct: 259 NLSLYEVQEAADIVASASDQDVNMIFGSVINENLKDEIVVTVIATGFLENL 309
>pdb|3VOA|A Chain A, Staphylococcus Aureus Ftsz 12-316 Gdp-Form
pdb|3VOB|A Chain A, Staphylococcus Aureus Ftsz With Pc190723
pdb|3VPA|A Chain A, Staphylococcus Aureus Ftsz Apo-Form
pdb|3VPA|B Chain B, Staphylococcus Aureus Ftsz Apo-Form
pdb|3VPA|C Chain C, Staphylococcus Aureus Ftsz Apo-Form
pdb|3VPA|D Chain D, Staphylococcus Aureus Ftsz Apo-Form
Length = 308
Score = 281 bits (719), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 147/287 (51%), Positives = 194/287 (67%)
Query: 76 RMIGSGLQGVDFYAINTDSQALLQSAAENPLQIXXXXXXXXXXXXXXXXXEQAAEESKEV 135
RMI G+ V+F AINTD QAL S AE+ +QI ++AAEES+E
Sbjct: 21 RMIDHGMNNVEFIAINTDGQALNLSKAESKIQIGEKLTRGLGAGANPEIGKKAAEESREQ 80
Query: 136 IANALKGSDLVFIXXXXXXXXXXXXXPVVAQIAKEAGYLTVGVVTYPFSFEGRKRSSQAL 195
I +A++G+D+VF+ PVVA+IAKE G LTVGVVT PFSFEGRKR +QA
Sbjct: 81 IEDAIQGADMVFVTSGMGGGTGTGAAPVVAKIAKEMGALTVGVVTRPFSFEGRKRQTQAA 140
Query: 196 EAIERLQKNVDTLIVIPNDRLLDITDEQTALQDAFLLADDVLRQGVQGISDIITIPGLVN 255
+E ++ VDTLIVIPNDRLLDI D+ T + +AF AD+VLRQGVQGISD+I + G VN
Sbjct: 141 AGVEAMKAAVDTLIVIPNDRLLDIVDKSTPMMEAFKEADNVLRQGVQGISDLIAVSGEVN 200
Query: 256 VDFADVKAVMKDSGTAMLGVGVSSSKNRAEEAAEQATLAPLIGSSIQSATGVVYNITGGK 315
+DFADVK +M + G+A++G+GVSS +NRA EAA++A +PL+ +SI A GV+ NITGG+
Sbjct: 201 LDFADVKTIMSNQGSALMGIGVSSGENRAVEAAKKAISSPLLETSIVGAQGVLMNITGGE 260
Query: 316 DITLQEVNRVSQVVTSLADPSANIIFGAVVDDRYNGEIHVTIIATGF 362
++L E + +V AD N+IFG V++ EI VT+IATGF
Sbjct: 261 SLSLFEAQEAADIVQDAADEDVNMIFGTVINPELQDEIVVTVIATGF 307
>pdb|2Q1X|A Chain A, Crystal Structure Of Cell Division Protein Ftsz From
Mycobacterium Tuberculosis In Complex With Citrate.
pdb|2Q1X|B Chain B, Crystal Structure Of Cell Division Protein Ftsz From
Mycobacterium Tuberculosis In Complex With Citrate.
pdb|2Q1Y|A Chain A, Crystal Structure Of Cell Division Protein Ftsz From
Mycobacterium Tuberculosis In Complex With Gtp-Gamma-S
pdb|2Q1Y|B Chain B, Crystal Structure Of Cell Division Protein Ftsz From
Mycobacterium Tuberculosis In Complex With Gtp-Gamma-S
Length = 379
Score = 268 bits (686), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 140/290 (48%), Positives = 190/290 (65%)
Query: 76 RMIGSGLQGVDFYAINTDSQALLQSAAENPLQIXXXXXXXXXXXXXXXXXEQAAEESKEV 135
RMI GL+GV+F AINTD+QALL S A+ L + +AAE++K+
Sbjct: 26 RMIEQGLKGVEFIAINTDAQALLMSDADVKLDVGRDSTRGLGAGADPEVGRKAAEDAKDE 85
Query: 136 IANALKGSDLVFIXXXXXXXXXXXXXPVVAQIAKEAGYLTVGVVTYPFSFEGRKRSSQAL 195
I L+G+D+VF+ PVVA IA++ G LTVGVVT PFSFEG++RS+QA
Sbjct: 86 IEELLRGADMVFVTAGEGGGTGTGGAPVVASIARKLGALTVGVVTRPFSFEGKRRSNQAE 145
Query: 196 EAIERLQKNVDTLIVIPNDRLLDITDEQTALQDAFLLADDVLRQGVQGISDIITIPGLVN 255
I L+++ DTLIVIPNDRLL + D +L DAF AD+VL GVQGI+D+IT PGL+N
Sbjct: 146 NGIAALRESCDTLIVIPNDRLLQMGDAAVSLMDAFRSADEVLLNGVQGITDLITTPGLIN 205
Query: 256 VDFADVKAVMKDSGTAMLGVGVSSSKNRAEEAAEQATLAPLIGSSIQSATGVVYNITGGK 315
VDFADVK +M +GTA++G+G + + R+ +AAE A +PL+ +S++ A GV+ +I GG
Sbjct: 206 VDFADVKGIMSGAGTALMGIGSARGEGRSLKAAEIAINSPLLEASMEGAQGVLMSIAGGS 265
Query: 316 DITLQEVNRVSQVVTSLADPSANIIFGAVVDDRYNGEIHVTIIATGFSQS 365
D+ L E+N + +V A P ANIIFG V+DD E+ VT+IA GF S
Sbjct: 266 DLGLFEINEAASLVQDAAHPDANIIFGTVIDDSLGDEVRVTVIAAGFDVS 315
>pdb|1RLU|A Chain A, Mycobacterium Tuberculosis Ftsz In Complex With
Gtp-Gamma-S
pdb|1RLU|B Chain B, Mycobacterium Tuberculosis Ftsz In Complex With
Gtp-Gamma-S
pdb|1RQ2|A Chain A, Mycobacterium Tuberculosis Ftsz In Complex With Citrate
pdb|1RQ2|B Chain B, Mycobacterium Tuberculosis Ftsz In Complex With Citrate
pdb|1RQ7|A Chain A, Mycobacterium Tuberculosis Ftsz In Complex With Gdp
pdb|1RQ7|B Chain B, Mycobacterium Tuberculosis Ftsz In Complex With Gdp
Length = 382
Score = 268 bits (685), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 140/290 (48%), Positives = 190/290 (65%)
Query: 76 RMIGSGLQGVDFYAINTDSQALLQSAAENPLQIXXXXXXXXXXXXXXXXXEQAAEESKEV 135
RMI GL+GV+F AINTD+QALL S A+ L + +AAE++K+
Sbjct: 29 RMIEQGLKGVEFIAINTDAQALLMSDADVKLDVGRDSTRGLGAGADPEVGRKAAEDAKDE 88
Query: 136 IANALKGSDLVFIXXXXXXXXXXXXXPVVAQIAKEAGYLTVGVVTYPFSFEGRKRSSQAL 195
I L+G+D+VF+ PVVA IA++ G LTVGVVT PFSFEG++RS+QA
Sbjct: 89 IEELLRGADMVFVTAGEGGGTGTGGAPVVASIARKLGALTVGVVTRPFSFEGKRRSNQAE 148
Query: 196 EAIERLQKNVDTLIVIPNDRLLDITDEQTALQDAFLLADDVLRQGVQGISDIITIPGLVN 255
I L+++ DTLIVIPNDRLL + D +L DAF AD+VL GVQGI+D+IT PGL+N
Sbjct: 149 NGIAALRESCDTLIVIPNDRLLQMGDAAVSLMDAFRSADEVLLNGVQGITDLITTPGLIN 208
Query: 256 VDFADVKAVMKDSGTAMLGVGVSSSKNRAEEAAEQATLAPLIGSSIQSATGVVYNITGGK 315
VDFADVK +M +GTA++G+G + + R+ +AAE A +PL+ +S++ A GV+ +I GG
Sbjct: 209 VDFADVKGIMSGAGTALMGIGSARGEGRSLKAAEIAINSPLLEASMEGAQGVLMSIAGGS 268
Query: 316 DITLQEVNRVSQVVTSLADPSANIIFGAVVDDRYNGEIHVTIIATGFSQS 365
D+ L E+N + +V A P ANIIFG V+DD E+ VT+IA GF S
Sbjct: 269 DLGLFEINEAASLVQDAAHPDANIIFGTVIDDSLGDEVRVTVIAAGFDVS 318
>pdb|3VO9|A Chain A, Staphylococcus Aureus Ftsz Apo-Form (Semet)
pdb|3VO9|B Chain B, Staphylococcus Aureus Ftsz Apo-Form (Semet)
pdb|3VO9|C Chain C, Staphylococcus Aureus Ftsz Apo-Form (Semet)
pdb|3VO9|D Chain D, Staphylococcus Aureus Ftsz Apo-Form (Semet)
Length = 308
Score = 267 bits (682), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 146/287 (50%), Positives = 187/287 (65%)
Query: 76 RMIGSGLQGVDFYAINTDSQALLQSAAENPLQIXXXXXXXXXXXXXXXXXEQAAEESKEV 135
R I G V+F AINTD QAL S AE+ +QI ++AAEES+E
Sbjct: 21 RXIDHGXNNVEFIAINTDGQALNLSKAESKIQIGEKLTRGLGAGANPEIGKKAAEESREQ 80
Query: 136 IANALKGSDLVFIXXXXXXXXXXXXXPVVAQIAKEAGYLTVGVVTYPFSFEGRKRSSQAL 195
I +A++G+D VF+ PVVA+IAKE G LTVGVVT PFSFEGRKR +QA
Sbjct: 81 IEDAIQGADXVFVTSGXGGGTGTGAAPVVAKIAKEXGALTVGVVTRPFSFEGRKRQTQAA 140
Query: 196 EAIERLQKNVDTLIVIPNDRLLDITDEQTALQDAFLLADDVLRQGVQGISDIITIPGLVN 255
+E + VDTLIVIPNDRLLDI D+ T +AF AD+VLRQGVQGISD+I + G VN
Sbjct: 141 AGVEAXKAAVDTLIVIPNDRLLDIVDKSTPXXEAFKEADNVLRQGVQGISDLIAVSGEVN 200
Query: 256 VDFADVKAVMKDSGTAMLGVGVSSSKNRAEEAAEQATLAPLIGSSIQSATGVVYNITGGK 315
+DFADVK + + G+A+ G+GVSS +NRA EAA++A +PL+ +SI A GV+ NITGG+
Sbjct: 201 LDFADVKTIXSNQGSALXGIGVSSGENRAVEAAKKAISSPLLETSIVGAQGVLXNITGGE 260
Query: 316 DITLQEVNRVSQVVTSLADPSANIIFGAVVDDRYNGEIHVTIIATGF 362
++L E + +V AD N IFG V++ EI VT+IATGF
Sbjct: 261 SLSLFEAQEAADIVQDAADEDVNXIFGTVINPELQDEIVVTVIATGF 307
>pdb|4E6E|A Chain A, Crystal Structure Of A Putative Cell Division Protein Ftsz
(Tfu_1113) From Thermobifida Fusca Yx-Er1 At 2.22 A
Resolution
Length = 314
Score = 260 bits (665), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 140/287 (48%), Positives = 185/287 (64%)
Query: 76 RMIGSGLQGVDFYAINTDSQALLQSAAENPLQIXXXXXXXXXXXXXXXXXEQAAEESKEV 135
R I GL+GV+F AINTD+QALL S A+ L + +AAE+ +E
Sbjct: 27 RXIEEGLKGVEFIAINTDAQALLXSDADVKLDVGRELTRGLGAGANPDVGRKAAEDHREE 86
Query: 136 IANALKGSDLVFIXXXXXXXXXXXXXPVVAQIAKEAGYLTVGVVTYPFSFEGRKRSSQAL 195
I LKG+D VF+ PVVA IA+ G LT+GVVT PFSFEG++R++QA
Sbjct: 87 IEEVLKGADXVFVTAGEGGGTGTGGAPVVANIARSLGALTIGVVTRPFSFEGKRRATQAE 146
Query: 196 EAIERLQKNVDTLIVIPNDRLLDITDEQTALQDAFLLADDVLRQGVQGISDIITIPGLVN 255
I L++ VDTLIVIPNDRLL I+D Q ++ DAF AD VL GVQGI+D+IT PGL+N
Sbjct: 147 AGIAXLREEVDTLIVIPNDRLLSISDRQVSVLDAFKAADQVLLSGVQGITDLITTPGLIN 206
Query: 256 VDFADVKAVMKDSGTAMLGVGVSSSKNRAEEAAEQATLAPLIGSSIQSATGVVYNITGGK 315
+DFADVK+V +G+A+ G+G + +RA AAE A +PL+ +SI A GV+ +I GG
Sbjct: 207 LDFADVKSVXSGAGSALXGIGSARGDDRAVAAAEXAISSPLLEASIDGAHGVLLSIQGGS 266
Query: 316 DITLQEVNRVSQVVTSLADPSANIIFGAVVDDRYNGEIHVTIIATGF 362
D+ L E+N +Q+V + A ANIIFGAV+DD E+ VT+IA GF
Sbjct: 267 DLGLFEINEAAQLVANSAAAEANIIFGAVIDDALGDEVRVTVIAAGF 313
>pdb|2VAW|A Chain A, Ftsz Pseudomonas Aeruginosa Gdp
Length = 394
Score = 228 bits (581), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 126/296 (42%), Positives = 171/296 (57%), Gaps = 1/296 (0%)
Query: 76 RMIGSGLQGVDFYAINTDSQALLQSAAENPLQIXXXXXXXXXXXXXXXXXEQAAEESKEV 135
M + ++GV+F NTD+QAL AA LQ+ QAA E +E
Sbjct: 29 HMAKNNVEGVEFICANTDAQALKNIAARTVLQLGPGVTKGLGAGANPEVGRQAALEDRER 88
Query: 136 IANALKGSDLVFIXXXXXXXXXXXXXPVVAQIAKEAGYLTVGVVTYPFSFEGRKRSSQAL 195
I+ L+G+D+VFI P++A++AKE G LTV VVT PF FEGRKR A
Sbjct: 89 ISEVLEGADMVFITTGMGGGTGTGAAPIIAEVAKEMGILTVAVVTRPFPFEGRKRMQIAD 148
Query: 196 EAIERLQKNVDTLIVIPNDRLLDITDEQTALQDAFLLADDVLRQGVQGISDIITIPGLVN 255
E I L ++VD+LI IPN++LL I + +L AF ADDVL V+GISDII PG++N
Sbjct: 149 EGIRALAESVDSLITIPNEKLLTILGKDASLLAAFAKADDVLAGAVRGISDIIKRPGMIN 208
Query: 256 VDFADVKAVMKDSGTAMLGVGVSSSKNRAEEAAEQATLAPLIGS-SIQSATGVVYNITGG 314
VDFADVK VM + G AM+G G +S NRA EA E A PL+ ++Q A G++ NIT G
Sbjct: 209 VDFADVKTVMSEMGMAMMGTGCASGPNRAREATEAAIRNPLLEDVNLQGARGILVNITAG 268
Query: 315 KDITLQEVNRVSQVVTSLADPSANIIFGAVVDDRYNGEIHVTIIATGFSQSFQKTL 370
D++L E + V ++ A A + G V+D E+HVT++ATG +K +
Sbjct: 269 PDLSLGEYSDVGNIIEQFASEHATVKVGTVIDADMRDELHVTVVATGLGARLEKPV 324
>pdb|1OFU|A Chain A, Crystal Structure Of Sula:ftsz From Pseudomonas Aeruginosa
pdb|1OFU|B Chain B, Crystal Structure Of Sula:ftsz From Pseudomonas Aeruginosa
Length = 320
Score = 225 bits (574), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 125/289 (43%), Positives = 168/289 (58%), Gaps = 1/289 (0%)
Query: 76 RMIGSGLQGVDFYAINTDSQALLQSAAENPLQIXXXXXXXXXXXXXXXXXEQAAEESKEV 135
M + ++GV+F NTD+QAL AA LQ+ QAA E +E
Sbjct: 29 HMAKNNVEGVEFICANTDAQALKNIAARTVLQLGPGVTKGLGAGANPEVGRQAALEDRER 88
Query: 136 IANALKGSDLVFIXXXXXXXXXXXXXPVVAQIAKEAGYLTVGVVTYPFSFEGRKRSSQAL 195
I+ L+G+D+VFI P++A++AKE G LTV VVT PF FEGRKR A
Sbjct: 89 ISEVLEGADMVFITTGMGGGTGTGAAPIIAEVAKEMGILTVAVVTRPFPFEGRKRMQIAD 148
Query: 196 EAIERLQKNVDTLIVIPNDRLLDITDEQTALQDAFLLADDVLRQGVQGISDIITIPGLVN 255
E I L ++VD+LI IPN++LL I + +L AF ADDVL V+GISDII PG++N
Sbjct: 149 EGIRALAESVDSLITIPNEKLLTILGKDASLLAAFAKADDVLAGAVRGISDIIKRPGMIN 208
Query: 256 VDFADVKAVMKDSGTAMLGVGVSSSKNRAEEAAEQATLAPLIGS-SIQSATGVVYNITGG 314
VDFADVK VM + G AM+G G +S NRA EA E A PL+ ++Q A G++ NIT G
Sbjct: 209 VDFADVKTVMSEMGMAMMGTGCASGPNRAREATEAAIRNPLLEDVNLQGARGILVNITAG 268
Query: 315 KDITLQEVNRVSQVVTSLADPSANIIFGAVVDDRYNGEIHVTIIATGFS 363
D++L E + V ++ A A + G V+D E+HVT++ATG
Sbjct: 269 PDLSLGEYSDVGNIIEQFASEHATVKVGTVIDADMRDELHVTVVATGLG 317
>pdb|1W5F|A Chain A, Ftsz, T7 Mutated, Domain Swapped (T. Maritima)
pdb|1W5F|B Chain B, Ftsz, T7 Mutated, Domain Swapped (T. Maritima)
Length = 353
Score = 207 bits (527), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 116/290 (40%), Positives = 177/290 (61%), Gaps = 3/290 (1%)
Query: 76 RMIGSGLQGVDFYAINTDSQALLQSAAENPLQIXXXXXXXXXXXXXXXXXEQAAEESKEV 135
RMI G+ GV+F A+NTD Q L S A+ +QI EQAA ES+E
Sbjct: 39 RMIEIGIHGVEFVAVNTDLQVLEASNADVKIQIGENITRGLGAGGRPEIGEQAALESEEK 98
Query: 136 IANALKGSDLVFIXXXXXXXXXXXXXPVVAQIAKEAGYLTVGVVTYPFSFEGRKRSSQAL 195
I L+ + +VFI PV+A+IAKE G LTV +VT PF FEG +R +A+
Sbjct: 99 IREVLQDTHMVFITAGFGGGTGTGASPVIAKIAKEMGILTVAIVTTPFYFEGPERLKKAI 158
Query: 196 EAIERLQKNVDTLIVIPNDRLLDITDEQTALQDAFLLADDVLRQGVQGISDIITIPGLVN 255
E +++L+K+VDTLI I N++L++ ++DAFL AD+ L QGV+GIS++IT G +
Sbjct: 159 EGLKKLRKHVDTLIKISNNKLMEELPRDVKIKDAFLKADETLHQGVKGISELITKRGYIR 218
Query: 256 VD--FADVKAVMKDSGTAMLGVGVSSSKNRAEEAAEQATLAPLIGSSIQSATGVVYNITG 313
+ FA +++VMKD+G A+LG+GV ++RA EAA++A + LI +++A+ +V+NIT
Sbjct: 219 LTSRFARIESVMKDAGAAILGIGVGKGEHRAREAAKKAMESKLIEHPVENASSIVFNITA 278
Query: 314 GKDITLQEVNRVSQVVTSLADPSANIIFGAVVDDRY-NGEIHVTIIATGF 362
+I ++EV+ + ++ + A++ FG + DD + EI V IAT F
Sbjct: 279 PSNIRMEEVHEAAMIIRQNSSEDADVKFGLIFDDEVPDDEIRVIFIATRF 328
>pdb|1W5E|A Chain A, Ftsz W319y Mutant, P1 (m. Jannaschii)
pdb|1W5E|B Chain B, Ftsz W319y Mutant, P1 (m. Jannaschii)
pdb|1W5E|C Chain C, Ftsz W319y Mutant, P1 (m. Jannaschii)
pdb|1W5E|D Chain D, Ftsz W319y Mutant, P1 (m. Jannaschii)
pdb|1W5E|E Chain E, Ftsz W319y Mutant, P1 (m. Jannaschii)
pdb|1W5E|F Chain F, Ftsz W319y Mutant, P1 (m. Jannaschii)
pdb|1W5E|G Chain G, Ftsz W319y Mutant, P1 (m. Jannaschii)
pdb|1W5E|H Chain H, Ftsz W319y Mutant, P1 (m. Jannaschii)
pdb|1W5E|I Chain I, Ftsz W319y Mutant, P1 (m. Jannaschii)
Length = 364
Score = 204 bits (518), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 119/294 (40%), Positives = 176/294 (59%), Gaps = 1/294 (0%)
Query: 76 RMIGSGLQGVDFYAINTDSQALLQSAAENPLQIXXXXXXXXXXXXXXXXXEQAAEESKEV 135
R+ G++G AINTD+Q L+++ A+ + I E+AA+ES E
Sbjct: 55 RLKMEGIEGAKTVAINTDAQQLIRTKADKKILIGKKLTRGLGAGGNPKIGEEAAKESAEE 114
Query: 136 IANALKGSDLVFIXXXXXXXXXXXXXPVVAQIAKEAGYLTVGVVTYPFSFEGRKRSSQAL 195
I A++ SD+VFI PVVA+I+K+ G LTV VVT PF EG+ R A+
Sbjct: 115 IKAAIQDSDMVFITCGLGGGTGTGSAPVVAEISKKIGALTVAVVTLPFVMEGKVRMKNAM 174
Query: 196 EAIERLQKNVDTLIVIPNDRLLDITDEQTALQDAFLLADDVLRQGVQGISDIITIPGLVN 255
E +ERL+++ DTL+VIPN++L +I L+ AF +AD+VL V+G+ ++IT GL+N
Sbjct: 175 EGLERLKQHTDTLVVIPNEKLFEIV-PNMPLKLAFKVADEVLINAVKGLVELITKDGLIN 233
Query: 256 VDFADVKAVMKDSGTAMLGVGVSSSKNRAEEAAEQATLAPLIGSSIQSATGVVYNITGGK 315
VDFADVKAVM + G AM+G+G S S+ RA+EA A +PL+ I ATG + ++ G +
Sbjct: 234 VDFADVKAVMNNGGLAMIGIGESDSEKRAKEAVSMALNSPLLDVDIDGATGALIHVMGPE 293
Query: 316 DITLQEVNRVSQVVTSLADPSANIIFGAVVDDRYNGEIHVTIIATGFSQSFQKT 369
D+TL+E V V+S DP+A II+GA +D+ + V ++ TG + T
Sbjct: 294 DLTLEEAREVVATVSSRLDPNATIIYGATIDENLENTVRVLLVITGVQSRIEFT 347
>pdb|1FSZ|A Chain A, Crystal Structure Of The Cell-Division Protein Ftsz At
2.8a Resolution
Length = 372
Score = 203 bits (517), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 119/294 (40%), Positives = 176/294 (59%), Gaps = 1/294 (0%)
Query: 76 RMIGSGLQGVDFYAINTDSQALLQSAAENPLQIXXXXXXXXXXXXXXXXXEQAAEESKEV 135
R+ G++G AINTD+Q L+++ A+ + I E+AA+ES E
Sbjct: 55 RLKMEGIEGAKTVAINTDAQQLIRTKADKKILIGKKLTRGLGAGGNPKIGEEAAKESAEE 114
Query: 136 IANALKGSDLVFIXXXXXXXXXXXXXPVVAQIAKEAGYLTVGVVTYPFSFEGRKRSSQAL 195
I A++ SD+VFI PVVA+I+K+ G LTV VVT PF EG+ R A+
Sbjct: 115 IKAAIQDSDMVFITCGLGGGTGTGSAPVVAEISKKIGALTVAVVTLPFVMEGKVRMKNAM 174
Query: 196 EAIERLQKNVDTLIVIPNDRLLDITDEQTALQDAFLLADDVLRQGVQGISDIITIPGLVN 255
E +ERL+++ DTL+VIPN++L +I L+ AF +AD+VL V+G+ ++IT GL+N
Sbjct: 175 EGLERLKQHTDTLVVIPNEKLFEIV-PNMPLKLAFKVADEVLINAVKGLVELITKDGLIN 233
Query: 256 VDFADVKAVMKDSGTAMLGVGVSSSKNRAEEAAEQATLAPLIGSSIQSATGVVYNITGGK 315
VDFADVKAVM + G AM+G+G S S+ RA+EA A +PL+ I ATG + ++ G +
Sbjct: 234 VDFADVKAVMNNGGLAMIGIGESDSEKRAKEAVSMALNSPLLDVDIDGATGALIHVMGPE 293
Query: 316 DITLQEVNRVSQVVTSLADPSANIIFGAVVDDRYNGEIHVTIIATGFSQSFQKT 369
D+TL+E V V+S DP+A II+GA +D+ + V ++ TG + T
Sbjct: 294 DLTLEEAREVVATVSSRLDPNATIIWGATIDENLENTVRVLLVITGVQSRIEFT 347
>pdb|1W58|1 Chain 1, Ftsz Gmpcpp Soak I213 (M. Jannaschii)
pdb|1W59|A Chain A, Ftsz Dimer, Empty (M. Jannaschii)
pdb|1W59|B Chain B, Ftsz Dimer, Empty (M. Jannaschii)
pdb|1W5A|A Chain A, Ftsz Dimer, Mggtp Soak (M. Jannaschii)
pdb|1W5A|B Chain B, Ftsz Dimer, Mggtp Soak (M. Jannaschii)
pdb|1W5B|A Chain A, Ftsz Dimer, Gtp Soak (M. Jannaschii)
pdb|1W5B|B Chain B, Ftsz Dimer, Gtp Soak (M. Jannaschii)
pdb|2VAP|A Chain A, Ftsz Gdp M. Jannaschii
Length = 364
Score = 203 bits (517), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 119/294 (40%), Positives = 176/294 (59%), Gaps = 1/294 (0%)
Query: 76 RMIGSGLQGVDFYAINTDSQALLQSAAENPLQIXXXXXXXXXXXXXXXXXEQAAEESKEV 135
R+ G++G AINTD+Q L+++ A+ + I E+AA+ES E
Sbjct: 55 RLKMEGIEGAKTVAINTDAQQLIRTKADKKILIGKKLTRGLGAGGNPKIGEEAAKESAEE 114
Query: 136 IANALKGSDLVFIXXXXXXXXXXXXXPVVAQIAKEAGYLTVGVVTYPFSFEGRKRSSQAL 195
I A++ SD+VFI PVVA+I+K+ G LTV VVT PF EG+ R A+
Sbjct: 115 IKAAIQDSDMVFITCGLGGGTGTGSAPVVAEISKKIGALTVAVVTLPFVMEGKVRMKNAM 174
Query: 196 EAIERLQKNVDTLIVIPNDRLLDITDEQTALQDAFLLADDVLRQGVQGISDIITIPGLVN 255
E +ERL+++ DTL+VIPN++L +I L+ AF +AD+VL V+G+ ++IT GL+N
Sbjct: 175 EGLERLKQHTDTLVVIPNEKLFEIV-PNMPLKLAFKVADEVLINAVKGLVELITKDGLIN 233
Query: 256 VDFADVKAVMKDSGTAMLGVGVSSSKNRAEEAAEQATLAPLIGSSIQSATGVVYNITGGK 315
VDFADVKAVM + G AM+G+G S S+ RA+EA A +PL+ I ATG + ++ G +
Sbjct: 234 VDFADVKAVMNNGGLAMIGIGESDSEKRAKEAVSMALNSPLLDVDIDGATGALIHVMGPE 293
Query: 316 DITLQEVNRVSQVVTSLADPSANIIFGAVVDDRYNGEIHVTIIATGFSQSFQKT 369
D+TL+E V V+S DP+A II+GA +D+ + V ++ TG + T
Sbjct: 294 DLTLEEAREVVATVSSRLDPNATIIWGATIDENLENTVRVLLVITGVQSRIEFT 347
>pdb|2R6R|1 Chain 1, Aquifex Aeolicus Ftsz
pdb|2R75|1 Chain 1, Aquifex Aeolicus Ftsz With 8-Morpholino-Gtp
Length = 338
Score = 186 bits (473), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 105/294 (35%), Positives = 166/294 (56%), Gaps = 2/294 (0%)
Query: 76 RMIGSGLQGVDFYAINTDSQALLQSAAENPLQIXXXXXXXXXXXXXXXXXEQAAEESKEV 135
RM G++GV+ YAINTD Q L N +QI E+AA E +
Sbjct: 25 RMYEDGIEGVELYAINTDVQHLSTLKVPNKIQIGEKVTRGLGAGAKPEVGEEAALEDIDK 84
Query: 136 IANALKGSDLVFIXXXXXXXXXXXXXPVVAQIAKEAGYLTVGVVTYPFSFEGRKRSSQAL 195
I L+ +D+VFI PV+A+ AKE G LTV V T PF FEG ++ +AL
Sbjct: 85 IKEILRDTDMVFISAGLGGGTGTGAAPVIAKTAKEMGILTVAVATLPFRFEGPRKMEKAL 144
Query: 196 EAIERLQKNVDTLIVIPNDRLLDITDEQTALQDAFLLADDVLRQGVQGISDIITIPGLVN 255
+ +E+L+++ D IVI ND++ ++++ ++DAF D VL + V+GI+ I+ P ++N
Sbjct: 145 KGLEKLKESSDAYIVIHNDKIKELSNRTLTIKDAFKEVDSVLSKAVRGITSIVVTPAVIN 204
Query: 256 VDFADVKAVMKDSGTAMLGVGVSSSKNRAEEAAEQATLAPLI-GSSIQSATGVVYNITGG 314
VDFADV+ +++ G +++G+G +A+ A E+A +PL+ G++I+ A ++ I
Sbjct: 205 VDFADVRTTLEEGGLSIIGMGEGRGDEKADIAVEKAVTSPLLEGNTIEGARRLLVTIWTS 264
Query: 315 KDITLQEVNRVSQVVTSLADPSANIIFGAVVDDRYNGEIHVTIIATGF-SQSFQ 367
+DI V+ V + + S P A IIFGAV++ + I V I+AT F + FQ
Sbjct: 265 EDIPYDIVDEVMERIHSKVHPEAEIIFGAVLEPQEQDFIRVAIVATDFPEEKFQ 318
>pdb|2Q80|A Chain A, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
Synthase Bound To Ggpp
pdb|2Q80|B Chain B, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
Synthase Bound To Ggpp
pdb|2Q80|C Chain C, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
Synthase Bound To Ggpp
pdb|2Q80|D Chain D, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
Synthase Bound To Ggpp
pdb|2Q80|E Chain E, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
Synthase Bound To Ggpp
pdb|2Q80|F Chain F, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
Synthase Bound To Ggpp
Length = 301
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Query: 200 RLQKNVDTLIVIPNDRLLDITDEQTALQDAFLLADDV-----LRQGVQGISDIITIPGLV 254
+L + + + +P D+L I + L +A LL DD+ LR+G I IP ++
Sbjct: 31 KLSQAFNHWLKVPEDKLQIIIEVTEMLHNASLLIDDIEDNSKLRRGFPVAHSIYGIPSVI 90
Query: 255 N 255
N
Sbjct: 91 N 91
>pdb|2D4Y|A Chain A, Crystal Structure Of A 49k Fragment Of Hap1 (Flgk)
pdb|2D4Y|B Chain B, Crystal Structure Of A 49k Fragment Of Hap1 (Flgk)
Length = 463
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 52/110 (47%), Gaps = 7/110 (6%)
Query: 257 DFADVKAVMKDSGTAMLGVGVSSSKNRAEEAAEQ--ATLAPLIGSSIQSATGVVYNITGG 314
++A A + D + M GVG +S N + +Q + L ++G + G YN+T
Sbjct: 107 NYAKQIANLNDQISRMTGVGAGASPNDLLDQRDQLVSELNKIVGVEVSVQDGGTYNLTMA 166
Query: 315 KDITLQEVNRVSQV--VTSLADPSANIIFGAVVDDRY-NGEIHVTIIATG 361
TL + + Q+ V S ADP+ + A VD+ N EI ++ TG
Sbjct: 167 NGYTLVQGSTARQLAAVPSSADPTRTTV--AYVDEAAGNIEIPEKLLNTG 214
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.129 0.346
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,642,687
Number of Sequences: 62578
Number of extensions: 289686
Number of successful extensions: 841
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 797
Number of HSP's gapped (non-prelim): 24
length of query: 415
length of database: 14,973,337
effective HSP length: 101
effective length of query: 314
effective length of database: 8,652,959
effective search space: 2717029126
effective search space used: 2717029126
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 53 (25.0 bits)