Query 014946
Match_columns 415
No_of_seqs 264 out of 1665
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 01:37:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014946.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014946hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09330 cell division protein 100.0 1.8E-77 3.9E-82 605.1 33.4 309 54-362 9-318 (384)
2 PRK13018 cell division protein 100.0 2.1E-75 4.6E-80 589.5 36.4 314 52-366 22-335 (378)
3 TIGR00065 ftsZ cell division p 100.0 3.4E-74 7.4E-79 577.9 34.6 312 54-366 13-328 (349)
4 cd02201 FtsZ_type1 FtsZ is a G 100.0 1.1E-72 2.5E-77 559.2 33.5 303 59-361 1-304 (304)
5 cd02191 FtsZ FtsZ is a GTPase 100.0 1.2E-72 2.6E-77 558.0 33.0 302 59-361 1-303 (303)
6 COG0206 FtsZ Cell division GTP 100.0 3.3E-71 7.1E-76 549.1 31.0 309 55-364 8-317 (338)
7 cd02202 FtsZ_type2 FtsZ is a G 100.0 3.2E-61 6.9E-66 485.0 32.9 300 59-364 1-345 (349)
8 cd00286 Tubulin_FtsZ Tubulin/F 100.0 1.5E-42 3.3E-47 347.0 22.2 295 60-360 1-327 (328)
9 smart00864 Tubulin Tubulin/Fts 100.0 8.5E-39 1.9E-43 297.3 16.8 191 60-252 1-192 (192)
10 COG5023 Tubulin [Cytoskeleton] 100.0 1.2E-37 2.7E-42 305.2 20.3 296 61-361 4-374 (443)
11 cd06059 Tubulin The tubulin su 100.0 3.8E-36 8.2E-41 306.9 19.5 296 61-362 2-330 (382)
12 cd02190 epsilon_tubulin The tu 100.0 3.5E-34 7.6E-39 291.8 20.2 292 60-362 2-326 (379)
13 PTZ00387 epsilon tubulin; Prov 100.0 5.3E-34 1.2E-38 296.5 21.5 303 60-362 3-397 (465)
14 PF00091 Tubulin: Tubulin/FtsZ 100.0 3.2E-34 6.8E-39 271.2 14.1 172 60-231 1-215 (216)
15 cd02187 beta_tubulin The tubul 100.0 2.3E-32 4.9E-37 282.4 22.9 303 60-362 2-371 (425)
16 cd02186 alpha_tubulin The tubu 100.0 4.1E-32 8.8E-37 281.1 21.1 302 60-361 2-380 (434)
17 PLN00222 tubulin gamma chain; 100.0 7.2E-32 1.6E-36 280.2 21.9 300 60-362 4-384 (454)
18 cd02188 gamma_tubulin Gamma-tu 100.0 1.2E-31 2.6E-36 277.1 22.1 303 60-362 2-378 (431)
19 PTZ00335 tubulin alpha chain; 100.0 9.3E-32 2E-36 279.1 19.6 302 61-362 4-382 (448)
20 PLN00220 tubulin beta chain; P 100.0 2.2E-31 4.9E-36 276.6 21.9 302 61-362 4-372 (447)
21 PTZ00010 tubulin beta chain; P 100.0 1.9E-31 4.2E-36 276.7 21.1 302 61-362 4-372 (445)
22 PLN00221 tubulin alpha chain; 100.0 9.4E-31 2E-35 271.7 20.6 301 61-361 4-381 (450)
23 cd02189 delta_tubulin The tubu 100.0 2.9E-28 6.2E-33 253.2 21.5 299 61-362 2-394 (446)
24 KOG1374 Gamma tubulin [Cytoske 99.9 9.4E-24 2E-28 208.0 16.2 298 59-360 3-381 (448)
25 PF12327 FtsZ_C: FtsZ family, 99.8 1.6E-20 3.5E-25 155.8 10.5 95 269-363 1-95 (95)
26 KOG1376 Alpha tubulin [Cytoske 99.8 1.4E-20 3E-25 185.1 4.0 238 88-333 66-331 (407)
27 KOG1375 Beta tubulin [Cytoskel 99.6 2.1E-16 4.6E-21 156.1 2.7 200 145-361 77-295 (369)
28 smart00865 Tubulin_C Tubulin/F 99.4 8.2E-12 1.8E-16 105.9 12.2 115 254-368 1-117 (120)
29 PF13809 Tubulin_2: Tubulin li 99.1 1.1E-09 2.5E-14 110.8 12.6 144 62-206 1-222 (345)
30 cd06060 misato Human Misato sh 98.7 5.3E-08 1.2E-12 102.6 10.1 156 116-274 121-295 (493)
31 cd02202 FtsZ_type2 FtsZ is a G 96.8 0.0012 2.6E-08 67.3 4.6 71 322-400 262-332 (349)
32 PF03953 Tubulin_C: Tubulin C- 96.4 0.022 4.7E-07 49.4 8.7 93 268-360 1-113 (126)
33 PF14881 Tubulin_3: Tubulin do 96.3 0.022 4.9E-07 52.7 8.6 93 121-213 42-153 (180)
34 PRK06153 hypothetical protein; 94.9 0.17 3.6E-06 52.3 9.8 43 55-99 173-215 (393)
35 COG0569 TrkA K+ transport syst 94.5 0.35 7.6E-06 46.2 10.6 97 59-183 1-104 (225)
36 PRK11064 wecC UDP-N-acetyl-D-m 93.7 1.5 3.2E-05 45.8 14.1 40 57-99 2-41 (415)
37 PF00899 ThiF: ThiF family; I 93.6 0.88 1.9E-05 39.5 10.5 41 58-100 2-42 (135)
38 TIGR02356 adenyl_thiF thiazole 93.4 0.46 9.9E-06 44.6 8.9 43 55-99 18-60 (202)
39 PRK12475 thiamine/molybdopteri 93.3 0.68 1.5E-05 47.0 10.6 44 55-100 21-64 (338)
40 cd01483 E1_enzyme_family Super 93.3 0.94 2E-05 39.6 10.2 38 60-99 1-38 (143)
41 PF05368 NmrA: NmrA-like famil 92.9 0.82 1.8E-05 43.0 9.9 96 61-176 1-98 (233)
42 PF00056 Ldh_1_N: lactate/mala 92.8 0.78 1.7E-05 40.5 8.9 37 59-96 1-38 (141)
43 KOG2013 SMT3/SUMO-activating c 92.7 0.28 6E-06 51.6 6.7 42 58-99 12-54 (603)
44 COG1179 Dinucleotide-utilizing 92.3 0.25 5.3E-06 47.9 5.4 45 54-100 26-70 (263)
45 PTZ00082 L-lactate dehydrogena 92.3 1.3 2.8E-05 44.7 10.9 37 57-95 5-41 (321)
46 PRK07688 thiamine/molybdopteri 92.2 1 2.2E-05 45.8 10.0 44 55-100 21-64 (339)
47 PF03721 UDPG_MGDP_dh_N: UDP-g 91.6 0.26 5.7E-06 45.7 4.7 39 59-100 1-39 (185)
48 PRK08644 thiamine biosynthesis 91.4 0.51 1.1E-05 44.7 6.5 42 57-100 27-68 (212)
49 PF13460 NAD_binding_10: NADH( 91.3 1.6 3.4E-05 39.1 9.4 95 61-179 1-96 (183)
50 cd00755 YgdL_like Family of ac 90.6 0.5 1.1E-05 45.5 5.7 42 57-100 10-51 (231)
51 PRK15116 sulfur acceptor prote 90.6 0.87 1.9E-05 44.9 7.4 46 53-100 25-70 (268)
52 PRK05086 malate dehydrogenase; 90.5 1.5 3.3E-05 44.0 9.2 34 59-93 1-36 (312)
53 cd01485 E1-1_like Ubiquitin ac 90.3 1.2 2.7E-05 41.6 7.9 41 57-99 18-58 (198)
54 TIGR02355 moeB molybdopterin s 90.2 0.78 1.7E-05 44.3 6.7 43 56-100 22-64 (240)
55 PRK06223 malate dehydrogenase; 90.0 2.7 5.9E-05 41.6 10.5 37 59-97 3-39 (307)
56 PRK10886 DnaA initiator-associ 90.0 7.1 0.00015 36.6 12.7 123 57-216 40-168 (196)
57 cd01484 E1-2_like Ubiquitin ac 89.7 1.2 2.7E-05 42.9 7.5 38 60-99 1-38 (234)
58 PTZ00325 malate dehydrogenase; 89.7 2.4 5.2E-05 42.9 9.9 83 51-157 3-91 (321)
59 PRK07634 pyrroline-5-carboxyla 89.6 0.59 1.3E-05 44.4 5.3 43 56-98 2-46 (245)
60 PRK08223 hypothetical protein; 89.6 1.1 2.5E-05 44.5 7.3 42 57-100 26-67 (287)
61 PF01488 Shikimate_DH: Shikima 89.5 1.2 2.5E-05 39.0 6.6 42 55-98 9-50 (135)
62 KOG2015 NEDD8-activating compl 89.4 0.87 1.9E-05 45.9 6.3 42 57-98 39-81 (422)
63 PLN00112 malate dehydrogenase 89.2 4.6 9.9E-05 42.7 11.9 39 58-97 100-146 (444)
64 cd00757 ThiF_MoeB_HesA_family 89.1 0.9 2E-05 43.3 6.1 42 56-99 19-60 (228)
65 PRK05690 molybdopterin biosynt 89.0 1 2.2E-05 43.6 6.4 42 56-99 30-71 (245)
66 TIGR02354 thiF_fam2 thiamine b 88.7 0.52 1.1E-05 44.2 4.1 37 57-95 20-56 (200)
67 cd05293 LDH_1 A subgroup of L- 88.6 4.6 9.9E-05 40.6 11.0 36 58-94 3-38 (312)
68 PRK08328 hypothetical protein; 88.3 0.55 1.2E-05 45.0 4.1 42 57-100 26-67 (231)
69 PLN00106 malate dehydrogenase 88.3 3.9 8.5E-05 41.3 10.3 78 58-157 18-101 (323)
70 TIGR01381 E1_like_apg7 E1-like 87.9 1.1 2.3E-05 49.3 6.4 44 54-99 334-377 (664)
71 TIGR03693 ocin_ThiF_like putat 87.9 1.2 2.7E-05 48.5 6.7 85 56-151 127-213 (637)
72 PTZ00117 malate dehydrogenase; 87.7 4.9 0.00011 40.4 10.6 36 57-94 4-39 (319)
73 PRK07679 pyrroline-5-carboxyla 87.5 1.3 2.7E-05 43.4 6.2 37 56-92 1-38 (279)
74 PRK00066 ldh L-lactate dehydro 87.4 2.9 6.2E-05 42.1 8.7 37 57-94 5-41 (315)
75 PLN02602 lactate dehydrogenase 87.3 2.3 4.9E-05 43.5 8.0 35 59-94 38-72 (350)
76 cd05290 LDH_3 A subgroup of L- 87.2 6.7 0.00014 39.3 11.2 33 60-93 1-33 (307)
77 cd01487 E1_ThiF_like E1_ThiF_l 86.9 1.8 4E-05 39.6 6.5 37 60-98 1-37 (174)
78 cd01488 Uba3_RUB Ubiquitin act 86.6 1.6 3.5E-05 43.5 6.4 71 60-145 1-71 (291)
79 PRK08762 molybdopterin biosynt 86.5 4.9 0.00011 41.3 10.1 43 55-99 132-174 (376)
80 PRK00414 gmhA phosphoheptose i 86.3 28 0.00061 32.3 14.1 116 57-213 43-164 (192)
81 cd01492 Aos1_SUMO Ubiquitin ac 86.2 1.8 4E-05 40.4 6.2 41 57-99 20-60 (197)
82 cd00650 LDH_MDH_like NAD-depen 86.1 3.3 7.1E-05 40.2 8.1 82 61-160 1-88 (263)
83 PRK05597 molybdopterin biosynt 85.9 1.4 3.1E-05 45.0 5.7 42 57-100 27-68 (355)
84 PLN02688 pyrroline-5-carboxyla 85.4 2.2 4.7E-05 41.2 6.5 40 59-98 1-42 (266)
85 PRK14619 NAD(P)H-dependent gly 85.3 1.5 3.3E-05 43.6 5.5 32 56-88 2-33 (308)
86 KOG2530 Members of tubulin/Fts 85.3 2.4 5.1E-05 44.4 6.8 127 129-266 187-327 (483)
87 TIGR01772 MDH_euk_gproteo mala 85.2 6.5 0.00014 39.6 9.9 76 60-157 1-82 (312)
88 TIGR03736 PRTRC_ThiF PRTRC sys 85.2 0.89 1.9E-05 44.2 3.6 45 56-100 9-61 (244)
89 PLN02657 3,8-divinyl protochlo 85.1 41 0.00088 34.6 16.1 39 53-94 55-94 (390)
90 TIGR00872 gnd_rel 6-phosphoglu 85.0 2.2 4.7E-05 42.3 6.4 38 59-99 1-38 (298)
91 PRK11880 pyrroline-5-carboxyla 85.0 1.9 4E-05 41.7 5.8 41 59-99 3-43 (267)
92 PRK07411 hypothetical protein; 84.9 2.5 5.4E-05 43.8 7.0 43 56-100 36-78 (390)
93 cd01489 Uba2_SUMO Ubiquitin ac 84.8 3.4 7.5E-05 41.6 7.7 39 60-100 1-39 (312)
94 PLN02353 probable UDP-glucose 84.7 2.9 6.3E-05 44.5 7.5 43 59-102 2-44 (473)
95 TIGR01759 MalateDH-SF1 malate 84.5 9.1 0.0002 38.7 10.6 36 57-92 2-42 (323)
96 PRK07878 molybdopterin biosynt 84.4 2.7 5.8E-05 43.6 7.0 43 56-100 40-82 (392)
97 cd01065 NAD_bind_Shikimate_DH 84.2 3.6 7.8E-05 35.9 6.8 42 56-99 17-58 (155)
98 cd01337 MDH_glyoxysomal_mitoch 84.1 3.8 8.3E-05 41.2 7.7 77 59-157 1-83 (310)
99 COG1023 Gnd Predicted 6-phosph 84.1 4.2 9E-05 39.7 7.5 37 59-98 1-37 (300)
100 PRK12491 pyrroline-5-carboxyla 84.1 2.1 4.5E-05 42.1 5.7 42 58-99 2-44 (272)
101 PTZ00431 pyrroline carboxylate 84.0 1.5 3.3E-05 42.5 4.7 39 56-94 1-40 (260)
102 PRK05600 thiamine biosynthesis 83.9 2.8 6.1E-05 43.1 6.9 44 55-100 38-81 (370)
103 COG0039 Mdh Malate/lactate deh 83.6 8.3 0.00018 38.9 9.8 75 59-157 1-84 (313)
104 cd05292 LDH_2 A subgroup of L- 83.4 10 0.00022 37.9 10.5 36 59-95 1-36 (308)
105 PRK14851 hypothetical protein; 83.2 3 6.4E-05 46.4 7.1 43 56-100 41-83 (679)
106 cd05294 LDH-like_MDH_nadp A la 83.2 16 0.00034 36.6 11.7 34 59-93 1-35 (309)
107 PRK05808 3-hydroxybutyryl-CoA 83.0 5.7 0.00012 38.8 8.4 37 59-98 4-40 (282)
108 PLN02545 3-hydroxybutyryl-CoA 83.0 6.1 0.00013 38.9 8.6 37 59-98 5-41 (295)
109 PF03435 Saccharop_dh: Sacchar 82.9 10 0.00022 38.7 10.5 93 61-177 1-96 (386)
110 PRK06545 prephenate dehydrogen 82.8 1.6 3.5E-05 44.5 4.6 37 60-97 2-38 (359)
111 cd01491 Ube1_repeat1 Ubiquitin 82.8 3.1 6.8E-05 41.4 6.4 42 56-99 17-58 (286)
112 PRK13938 phosphoheptose isomer 82.6 33 0.00072 32.1 12.9 119 57-215 44-168 (196)
113 KOG0409 Predicted dehydrogenas 82.3 4.1 8.9E-05 40.8 6.9 45 47-92 24-68 (327)
114 PF00289 CPSase_L_chain: Carba 82.2 1.9 4.1E-05 36.7 4.0 95 59-174 3-101 (110)
115 KOG2018 Predicted dinucleotide 82.0 1.6 3.4E-05 44.0 3.8 45 54-100 70-114 (430)
116 PRK09496 trkA potassium transp 81.8 2.8 6.1E-05 43.5 6.0 97 59-182 1-102 (453)
117 cd01486 Apg7 Apg7 is an E1-lik 81.8 2.9 6.2E-05 42.0 5.7 38 60-99 1-38 (307)
118 PRK15076 alpha-galactosidase; 81.5 5.7 0.00012 41.8 8.1 83 59-154 2-87 (431)
119 cd05296 GH4_P_beta_glucosidase 81.2 6.1 0.00013 41.4 8.2 84 59-155 1-88 (419)
120 TIGR00561 pntA NAD(P) transhyd 81.2 8.4 0.00018 41.4 9.3 108 56-171 162-274 (511)
121 PRK04148 hypothetical protein; 81.2 3.5 7.7E-05 36.4 5.4 39 57-99 16-54 (134)
122 PRK13302 putative L-aspartate 80.6 5.2 0.00011 39.3 7.0 41 56-97 4-45 (271)
123 cd02191 FtsZ FtsZ is a GTPase 80.3 2.1 4.5E-05 42.9 4.2 68 323-399 223-291 (303)
124 PLN02427 UDP-apiose/xylose syn 80.3 6.2 0.00013 40.1 7.8 89 48-155 4-99 (386)
125 PRK13940 glutamyl-tRNA reducta 80.2 6.5 0.00014 41.1 8.0 127 54-224 177-304 (414)
126 PF03446 NAD_binding_2: NAD bi 80.1 2.8 6E-05 37.6 4.6 38 59-99 2-39 (163)
127 cd01339 LDH-like_MDH L-lactate 79.7 14 0.00031 36.5 9.9 33 61-95 1-33 (300)
128 cd01338 MDH_choloroplast_like 79.6 16 0.00035 36.8 10.4 35 58-92 2-41 (322)
129 PRK07819 3-hydroxybutyryl-CoA 79.2 1.7 3.7E-05 42.9 3.2 38 59-99 6-43 (286)
130 cd01336 MDH_cytoplasmic_cytoso 79.2 3.1 6.8E-05 42.0 5.1 87 58-157 2-93 (325)
131 PLN02968 Probable N-acetyl-gam 79.0 7.2 0.00016 40.4 7.8 40 56-97 36-76 (381)
132 cd05291 HicDH_like L-2-hydroxy 78.9 3.4 7.3E-05 41.2 5.2 37 60-97 2-38 (306)
133 PRK13304 L-aspartate dehydroge 78.5 14 0.0003 36.1 9.2 39 59-98 2-41 (265)
134 PRK11559 garR tartronate semia 78.4 3.9 8.4E-05 40.2 5.4 38 59-99 3-40 (296)
135 PRK00094 gpsA NAD(P)H-dependen 78.2 4.1 8.8E-05 40.3 5.6 39 59-100 2-40 (325)
136 PRK09496 trkA potassium transp 78.2 9.6 0.00021 39.6 8.5 41 57-100 230-270 (453)
137 PF03807 F420_oxidored: NADP o 78.1 4.5 9.7E-05 32.4 4.8 40 60-99 1-41 (96)
138 TIGR00441 gmhA phosphoheptose 78.0 49 0.0011 29.3 12.7 118 57-214 10-133 (154)
139 cd00300 LDH_like L-lactate deh 78.0 7 0.00015 38.9 7.1 34 61-95 1-34 (300)
140 TIGR03026 NDP-sugDHase nucleot 78.0 6.1 0.00013 41.0 7.0 39 59-100 1-39 (411)
141 PRK12549 shikimate 5-dehydroge 77.6 8.9 0.00019 37.9 7.7 40 57-98 126-165 (284)
142 PRK06476 pyrroline-5-carboxyla 77.5 4.9 0.00011 38.7 5.8 40 59-98 1-40 (258)
143 COG1712 Predicted dinucleotide 77.3 6 0.00013 38.2 6.0 40 59-99 1-41 (255)
144 CHL00194 ycf39 Ycf39; Provisio 77.1 29 0.00064 34.2 11.3 96 59-176 1-105 (317)
145 PRK12490 6-phosphogluconate de 77.1 6.9 0.00015 38.7 6.8 38 59-99 1-38 (299)
146 PRK07680 late competence prote 77.0 5 0.00011 39.1 5.7 41 59-99 1-42 (273)
147 PLN02819 lysine-ketoglutarate 76.9 29 0.00062 40.7 12.5 122 58-211 569-701 (1042)
148 PRK06182 short chain dehydroge 76.9 15 0.00032 35.2 8.9 82 57-153 2-85 (273)
149 PRK14852 hypothetical protein; 76.8 5.9 0.00013 45.7 6.9 44 55-100 329-372 (989)
150 PLN02712 arogenate dehydrogena 76.8 5.7 0.00012 44.2 6.7 42 49-93 43-84 (667)
151 PRK00048 dihydrodipicolinate r 76.8 14 0.0003 35.9 8.7 92 59-184 2-95 (257)
152 cd01490 Ube1_repeat2 Ubiquitin 76.7 8.4 0.00018 40.6 7.6 41 60-100 1-44 (435)
153 cd00704 MDH Malate dehydrogena 76.7 14 0.00031 37.3 9.0 85 59-158 1-92 (323)
154 PRK13937 phosphoheptose isomer 76.0 40 0.00087 31.0 11.2 119 57-215 37-161 (188)
155 PLN00203 glutamyl-tRNA reducta 75.6 25 0.00053 38.0 10.9 145 56-241 264-418 (519)
156 PF01210 NAD_Gly3P_dh_N: NAD-d 75.5 1.7 3.6E-05 38.9 1.7 38 60-100 1-38 (157)
157 PRK14618 NAD(P)H-dependent gly 75.5 6.2 0.00013 39.5 6.0 39 58-99 4-42 (328)
158 TIGR01505 tartro_sem_red 2-hyd 75.2 5.7 0.00012 39.0 5.6 37 60-99 1-37 (291)
159 PF01262 AlaDh_PNT_C: Alanine 75.0 5.5 0.00012 35.9 5.1 109 55-173 17-131 (168)
160 PRK02006 murD UDP-N-acetylmura 75.0 16 0.00034 38.9 9.2 34 56-92 5-38 (498)
161 PRK09599 6-phosphogluconate de 75.0 8.2 0.00018 38.2 6.7 38 59-99 1-38 (301)
162 PLN03209 translocon at the inn 74.7 23 0.0005 38.7 10.4 41 54-97 76-117 (576)
163 KOG2336 Molybdopterin biosynth 74.3 22 0.00047 35.5 9.1 108 44-169 68-175 (422)
164 PLN00141 Tic62-NAD(P)-related 74.2 37 0.0008 32.1 10.8 41 54-97 13-54 (251)
165 PTZ00245 ubiquitin activating 73.8 13 0.00028 36.7 7.4 42 56-99 24-65 (287)
166 cd05213 NAD_bind_Glutamyl_tRNA 73.7 17 0.00036 36.4 8.6 40 56-97 176-215 (311)
167 PRK07877 hypothetical protein; 73.6 9.7 0.00021 42.7 7.4 44 55-100 104-147 (722)
168 PRK08300 acetaldehyde dehydrog 73.6 7.8 0.00017 38.9 6.1 93 56-177 2-99 (302)
169 PTZ00345 glycerol-3-phosphate 73.2 36 0.00077 35.1 11.0 127 57-186 10-164 (365)
170 PRK08818 prephenate dehydrogen 73.0 5.8 0.00013 40.9 5.2 33 58-92 4-37 (370)
171 PRK03659 glutathione-regulated 72.9 8 0.00017 42.4 6.5 88 57-172 399-489 (601)
172 PRK09424 pntA NAD(P) transhydr 72.6 21 0.00045 38.5 9.4 43 55-100 162-204 (509)
173 COG0287 TyrA Prephenate dehydr 72.5 6.6 0.00014 38.9 5.3 40 58-98 3-42 (279)
174 PRK08507 prephenate dehydrogen 72.4 6.2 0.00013 38.4 5.0 40 59-99 1-40 (275)
175 PLN02695 GDP-D-mannose-3',5'-e 72.4 39 0.00083 34.4 11.0 78 57-156 20-99 (370)
176 cd01075 NAD_bind_Leu_Phe_Val_D 72.0 6.1 0.00013 36.9 4.7 42 55-99 25-66 (200)
177 PF02056 Glyco_hydro_4: Family 72.0 15 0.00032 34.3 7.1 81 60-153 1-84 (183)
178 PRK05442 malate dehydrogenase; 72.0 16 0.00035 37.0 8.0 36 57-92 3-43 (326)
179 TIGR01757 Malate-DH_plant mala 71.9 41 0.00088 35.0 11.1 33 58-90 44-81 (387)
180 PF13380 CoA_binding_2: CoA bi 71.9 20 0.00043 30.5 7.5 100 60-176 2-106 (116)
181 PRK15461 NADH-dependent gamma- 71.7 8.6 0.00019 38.0 5.9 38 59-99 2-39 (296)
182 TIGR02853 spore_dpaA dipicolin 71.6 11 0.00024 37.3 6.7 40 56-98 149-188 (287)
183 COG1748 LYS9 Saccharopine dehy 71.3 11 0.00023 39.3 6.6 40 59-100 2-41 (389)
184 PF06908 DUF1273: Protein of u 71.1 12 0.00025 34.7 6.3 96 131-236 30-125 (177)
185 PRK10538 malonic semialdehyde 71.0 16 0.00036 34.3 7.5 81 59-153 1-85 (248)
186 TIGR03589 PseB UDP-N-acetylglu 71.0 91 0.002 30.9 13.2 80 57-154 3-86 (324)
187 PRK06249 2-dehydropantoate 2-r 70.9 5.8 0.00013 39.4 4.6 41 55-97 2-42 (313)
188 TIGR01763 MalateDH_bact malate 70.1 48 0.001 33.1 10.9 33 58-92 1-33 (305)
189 cd05297 GH4_alpha_glucosidase_ 69.9 18 0.00039 37.8 8.1 83 59-154 1-86 (423)
190 TIGR03649 ergot_EASG ergot alk 69.5 78 0.0017 30.4 12.0 93 60-177 1-101 (285)
191 PRK13403 ketol-acid reductoiso 69.5 16 0.00034 37.3 7.2 41 49-92 7-47 (335)
192 cd05298 GH4_GlvA_pagL_like Gly 69.2 19 0.00042 37.9 8.2 83 59-154 1-86 (437)
193 COG4821 Uncharacterized protei 69.2 9.9 0.00021 36.1 5.3 69 139-217 101-170 (243)
194 COG0240 GpsA Glycerol-3-phosph 69.2 48 0.001 33.8 10.5 52 58-110 1-53 (329)
195 PF01073 3Beta_HSD: 3-beta hyd 69.2 27 0.00058 34.3 8.8 91 65-174 5-109 (280)
196 PRK13936 phosphoheptose isomer 69.0 98 0.0021 28.7 12.9 119 57-215 42-169 (197)
197 PRK15059 tartronate semialdehy 68.8 8.7 0.00019 38.0 5.3 33 59-94 1-33 (292)
198 TIGR01850 argC N-acetyl-gamma- 68.5 10 0.00022 38.6 5.7 34 59-94 1-36 (346)
199 PRK07774 short chain dehydroge 68.3 24 0.00052 32.9 8.0 85 57-155 5-96 (250)
200 PRK00045 hemA glutamyl-tRNA re 68.2 50 0.0011 34.5 11.0 41 55-97 179-219 (423)
201 PRK10669 putative cation:proto 68.1 13 0.00029 40.1 6.9 40 58-100 417-456 (558)
202 PRK12480 D-lactate dehydrogena 68.1 12 0.00026 37.9 6.1 37 55-94 143-179 (330)
203 PRK03562 glutathione-regulated 67.5 14 0.0003 40.7 6.9 88 57-172 399-489 (621)
204 cd05197 GH4_glycoside_hydrolas 67.3 22 0.00048 37.3 8.1 83 59-154 1-86 (425)
205 PRK08306 dipicolinate synthase 67.3 22 0.00048 35.3 7.8 39 57-98 151-189 (296)
206 TIGR02279 PaaC-3OHAcCoADH 3-hy 67.1 5.3 0.00011 42.9 3.5 40 57-99 4-43 (503)
207 PRK07417 arogenate dehydrogena 67.0 9 0.0002 37.5 4.9 38 59-99 1-38 (279)
208 TIGR00518 alaDH alanine dehydr 66.8 22 0.00047 36.6 7.8 78 56-154 165-242 (370)
209 cd01080 NAD_bind_m-THF_DH_Cycl 66.6 20 0.00043 32.8 6.7 35 54-91 40-75 (168)
210 cd05311 NAD_bind_2_malic_enz N 66.5 9.2 0.0002 36.5 4.7 39 55-93 22-60 (226)
211 cd05006 SIS_GmhA Phosphoheptos 66.4 87 0.0019 28.2 11.0 117 58-214 33-155 (177)
212 PLN00198 anthocyanidin reducta 66.3 18 0.00039 35.8 7.0 31 52-82 3-34 (338)
213 TIGR02441 fa_ox_alpha_mit fatt 65.7 5 0.00011 45.1 3.1 43 54-99 331-373 (737)
214 PF02737 3HCDH_N: 3-hydroxyacy 65.7 8.6 0.00019 35.3 4.2 37 60-99 1-37 (180)
215 COG0373 HemA Glutamyl-tRNA red 65.7 23 0.0005 37.2 7.7 116 56-223 176-304 (414)
216 cd01493 APPBP1_RUB Ubiquitin a 65.5 19 0.00042 37.8 7.3 37 57-95 19-55 (425)
217 PRK07530 3-hydroxybutyryl-CoA 65.3 10 0.00023 37.2 5.0 40 57-99 3-42 (292)
218 PRK07326 short chain dehydroge 64.9 40 0.00086 31.1 8.7 83 57-152 5-92 (237)
219 COG0206 FtsZ Cell division GTP 64.9 10 0.00022 38.7 4.9 70 322-400 233-303 (338)
220 PRK15182 Vi polysaccharide bio 64.2 16 0.00035 38.3 6.4 40 58-101 6-45 (425)
221 COG2084 MmsB 3-hydroxyisobutyr 64.0 15 0.00032 36.6 5.7 44 225-268 165-209 (286)
222 PRK05708 2-dehydropantoate 2-r 63.2 9.7 0.00021 37.9 4.3 34 57-91 1-34 (305)
223 PRK12829 short chain dehydroge 62.8 34 0.00074 32.1 7.9 86 55-155 8-99 (264)
224 KOG0685 Flavin-containing amin 62.2 9.1 0.0002 40.6 4.0 61 59-122 22-85 (498)
225 TIGR03466 HpnA hopanoid-associ 62.2 26 0.00056 34.0 7.2 72 59-152 1-74 (328)
226 PRK02705 murD UDP-N-acetylmura 62.2 28 0.0006 36.3 7.8 31 59-92 1-31 (459)
227 TIGR02437 FadB fatty oxidation 61.9 7.2 0.00016 43.7 3.5 43 54-99 309-351 (714)
228 PRK08655 prephenate dehydrogen 61.8 13 0.00028 39.1 5.2 36 59-97 1-37 (437)
229 PRK07502 cyclohexadienyl dehyd 61.7 18 0.00038 35.8 5.9 41 58-99 6-46 (307)
230 cd05015 SIS_PGI_1 Phosphogluco 61.3 1.2E+02 0.0026 27.0 10.7 40 58-97 20-63 (158)
231 PLN02256 arogenate dehydrogena 61.2 13 0.00029 37.1 5.0 39 52-93 30-68 (304)
232 PRK06057 short chain dehydroge 61.1 35 0.00075 32.1 7.6 83 56-153 5-90 (255)
233 TIGR01408 Ube1 ubiquitin-activ 61.0 16 0.00035 42.6 6.1 43 55-99 21-63 (1008)
234 PRK04207 glyceraldehyde-3-phos 60.8 39 0.00084 34.4 8.3 32 59-92 2-33 (341)
235 TIGR01408 Ube1 ubiquitin-activ 60.5 24 0.00051 41.2 7.4 45 56-100 417-464 (1008)
236 COG0345 ProC Pyrroline-5-carbo 60.2 24 0.00052 34.8 6.4 40 59-98 2-42 (266)
237 KOG1495 Lactate dehydrogenase 59.8 63 0.0014 32.3 9.0 37 57-94 19-55 (332)
238 PLN02214 cinnamoyl-CoA reducta 59.6 30 0.00066 34.6 7.3 25 58-82 10-35 (342)
239 COG0476 ThiF Dinucleotide-util 59.5 28 0.00062 33.4 6.8 51 55-109 27-77 (254)
240 TIGR01035 hemA glutamyl-tRNA r 59.4 44 0.00094 34.9 8.6 40 56-97 178-217 (417)
241 PRK05867 short chain dehydroge 59.3 42 0.0009 31.5 7.8 86 55-153 6-97 (253)
242 PRK14106 murD UDP-N-acetylmura 58.8 48 0.001 34.4 8.8 35 56-93 3-37 (450)
243 TIGR01758 MDH_euk_cyt malate d 58.6 39 0.00084 34.1 7.8 34 60-93 1-39 (324)
244 COG4185 Uncharacterized protei 58.3 1E+02 0.0022 28.6 9.5 135 62-218 6-161 (187)
245 PRK05653 fabG 3-ketoacyl-(acyl 57.9 35 0.00076 31.3 7.0 86 57-155 4-95 (246)
246 KOG2337 Ubiquitin activating E 57.9 24 0.00052 38.0 6.2 34 54-87 336-369 (669)
247 PRK02318 mannitol-1-phosphate 57.8 39 0.00084 34.7 7.8 103 59-170 1-106 (381)
248 PRK12862 malic enzyme; Reviewe 57.8 26 0.00056 39.7 6.9 40 54-93 189-228 (763)
249 PTZ00142 6-phosphogluconate de 57.7 21 0.00045 38.1 5.9 37 59-98 2-38 (470)
250 PRK11154 fadJ multifunctional 57.3 7.9 0.00017 43.3 2.8 44 53-99 304-348 (708)
251 PF13580 SIS_2: SIS domain; PD 56.8 59 0.0013 28.2 7.8 91 58-179 35-137 (138)
252 PRK12939 short chain dehydroge 56.8 54 0.0012 30.4 8.0 83 56-153 5-95 (250)
253 PRK11199 tyrA bifunctional cho 56.8 26 0.00056 36.0 6.3 27 57-83 97-124 (374)
254 PRK01215 competence damage-ind 56.8 1.2E+02 0.0026 29.8 10.7 37 131-171 51-87 (264)
255 COG2910 Putative NADH-flavin r 56.7 88 0.0019 29.6 9.0 33 59-92 1-34 (211)
256 PRK05875 short chain dehydroge 56.7 57 0.0012 31.0 8.4 40 56-98 5-45 (276)
257 PRK11730 fadB multifunctional 56.6 11 0.00023 42.4 3.7 42 55-99 310-351 (715)
258 TIGR00873 gnd 6-phosphoglucona 56.4 22 0.00047 37.9 5.8 37 60-99 1-37 (467)
259 PRK12439 NAD(P)H-dependent gly 56.2 1.3E+02 0.0027 30.4 11.1 37 58-98 7-43 (341)
260 PRK05866 short chain dehydroge 56.1 68 0.0015 31.3 9.0 85 56-154 38-129 (293)
261 PRK07178 pyruvate carboxylase 56.0 39 0.00084 35.8 7.6 74 59-149 3-80 (472)
262 PRK06728 aspartate-semialdehyd 55.9 32 0.00069 35.3 6.7 53 276-328 216-275 (347)
263 PRK14620 NAD(P)H-dependent gly 55.6 57 0.0012 32.4 8.4 38 59-99 1-38 (326)
264 PRK12861 malic enzyme; Reviewe 55.4 22 0.00048 40.2 5.8 40 54-93 185-224 (764)
265 PRK07232 bifunctional malic en 55.4 22 0.00047 40.2 5.8 40 54-93 181-220 (752)
266 PRK07066 3-hydroxybutyryl-CoA 55.4 21 0.00045 36.1 5.2 40 57-99 6-45 (321)
267 PF02254 TrkA_N: TrkA-N domain 55.1 23 0.0005 29.2 4.7 91 61-179 1-96 (116)
268 PRK12429 3-hydroxybutyrate deh 54.9 89 0.0019 29.0 9.2 82 57-153 3-92 (258)
269 PRK06194 hypothetical protein; 54.7 53 0.0012 31.4 7.8 87 56-155 4-96 (287)
270 PRK06180 short chain dehydroge 54.7 71 0.0015 30.6 8.7 83 58-153 4-89 (277)
271 TIGR01771 L-LDH-NAD L-lactate 54.5 27 0.00058 34.8 5.8 30 63-93 1-30 (299)
272 PRK08293 3-hydroxybutyryl-CoA 54.4 21 0.00045 35.0 4.9 39 58-99 3-41 (287)
273 PRK07523 gluconate 5-dehydroge 54.3 59 0.0013 30.5 7.9 85 56-153 8-98 (255)
274 TIGR01918 various_sel_PB selen 54.3 48 0.001 34.9 7.6 48 131-180 323-372 (431)
275 PRK12936 3-ketoacyl-(acyl-carr 54.3 69 0.0015 29.5 8.3 84 56-153 4-91 (245)
276 COG1064 AdhP Zn-dependent alco 54.3 40 0.00087 34.4 7.0 37 58-97 167-203 (339)
277 TIGR03376 glycerol3P_DH glycer 54.1 21 0.00046 36.3 5.1 33 60-92 1-40 (342)
278 PRK06130 3-hydroxybutyryl-CoA 54.0 19 0.00042 35.5 4.7 38 59-99 5-42 (311)
279 PLN02662 cinnamyl-alcohol dehy 53.9 32 0.0007 33.5 6.2 25 58-82 4-29 (322)
280 TIGR01142 purT phosphoribosylg 53.9 23 0.0005 35.9 5.4 34 60-96 1-34 (380)
281 TIGR01470 cysG_Nterm siroheme 53.6 33 0.00072 32.2 6.0 33 56-89 7-39 (205)
282 PRK07825 short chain dehydroge 53.4 65 0.0014 30.6 8.1 86 56-154 3-90 (273)
283 PRK10675 UDP-galactose-4-epime 53.1 1.2E+02 0.0026 29.7 10.2 30 59-91 1-31 (338)
284 PRK07831 short chain dehydroge 52.9 1.3E+02 0.0027 28.4 10.0 86 55-153 14-108 (262)
285 PRK06949 short chain dehydroge 52.9 65 0.0014 30.1 8.0 84 56-152 7-96 (258)
286 TIGR00514 accC acetyl-CoA carb 52.5 53 0.0012 34.4 7.9 48 59-109 3-52 (449)
287 PRK05671 aspartate-semialdehyd 52.1 39 0.00084 34.4 6.6 91 58-177 4-95 (336)
288 PRK06035 3-hydroxyacyl-CoA deh 52.1 24 0.00051 34.7 4.9 38 59-99 4-41 (291)
289 COG0677 WecC UDP-N-acetyl-D-ma 52.0 50 0.0011 34.6 7.3 40 59-101 10-49 (436)
290 PRK12826 3-ketoacyl-(acyl-carr 52.0 1.3E+02 0.0028 27.7 9.8 86 57-155 5-96 (251)
291 PRK05441 murQ N-acetylmuramic 51.9 1.3E+02 0.0027 30.1 10.1 53 140-213 129-184 (299)
292 PRK11908 NAD-dependent epimera 51.7 49 0.0011 32.9 7.2 34 59-94 2-36 (347)
293 cd00758 MoCF_BD MoCF_BD: molyb 51.7 23 0.0005 30.6 4.3 38 131-172 47-84 (133)
294 PF01118 Semialdhyde_dh: Semia 51.5 10 0.00022 32.1 2.0 94 60-178 1-96 (121)
295 PRK13303 L-aspartate dehydroge 51.2 1.5E+02 0.0032 28.9 10.3 31 59-89 2-32 (265)
296 PRK13243 glyoxylate reductase; 51.1 20 0.00043 36.3 4.3 37 54-93 146-182 (333)
297 PRK09260 3-hydroxybutyryl-CoA 51.0 23 0.0005 34.7 4.7 38 59-99 2-39 (288)
298 PRK14982 acyl-ACP reductase; P 51.0 56 0.0012 33.4 7.5 42 56-99 153-196 (340)
299 PRK07024 short chain dehydroge 51.0 76 0.0016 29.9 8.1 83 59-154 3-90 (257)
300 PRK06522 2-dehydropantoate 2-r 50.9 23 0.0005 34.5 4.6 38 59-99 1-38 (304)
301 PF01408 GFO_IDH_MocA: Oxidore 50.7 28 0.00061 28.7 4.5 93 59-184 1-96 (120)
302 PRK07231 fabG 3-ketoacyl-(acyl 50.7 75 0.0016 29.4 8.0 83 57-154 4-93 (251)
303 cd05007 SIS_Etherase N-acetylm 50.5 1.8E+02 0.004 28.2 10.8 52 140-212 116-170 (257)
304 COG0794 GutQ Predicted sugar p 50.5 1.5E+02 0.0033 28.1 9.7 96 58-215 39-141 (202)
305 PRK05993 short chain dehydroge 50.4 79 0.0017 30.3 8.3 38 59-99 5-43 (277)
306 COG0031 CysK Cysteine synthase 50.3 1.5E+02 0.0032 29.9 10.2 113 59-184 170-293 (300)
307 PRK15181 Vi polysaccharide bio 50.0 70 0.0015 32.0 8.1 32 58-92 15-47 (348)
308 PRK07067 sorbitol dehydrogenas 49.9 71 0.0015 30.0 7.7 82 58-153 6-91 (257)
309 PRK12828 short chain dehydroge 49.9 1.2E+02 0.0026 27.6 9.2 83 57-153 6-93 (239)
310 PRK07806 short chain dehydroge 49.7 1.2E+02 0.0026 28.1 9.2 27 56-82 4-31 (248)
311 TIGR00177 molyb_syn molybdenum 49.5 25 0.00053 31.0 4.2 39 130-172 54-92 (144)
312 PRK08264 short chain dehydroge 49.4 1.4E+02 0.0031 27.3 9.7 40 57-98 5-45 (238)
313 PLN02735 carbamoyl-phosphate s 49.0 39 0.00085 39.9 6.8 36 58-96 23-69 (1102)
314 COG1062 AdhC Zn-dependent alco 49.0 38 0.00082 34.8 5.8 80 55-151 183-263 (366)
315 PRK08213 gluconate 5-dehydroge 48.9 82 0.0018 29.6 8.0 88 53-153 7-100 (259)
316 PRK06129 3-hydroxyacyl-CoA deh 48.8 25 0.00054 34.9 4.6 37 59-98 3-39 (308)
317 PRK07074 short chain dehydroge 48.7 87 0.0019 29.3 8.1 82 59-154 3-89 (257)
318 PRK07478 short chain dehydroge 48.7 1E+02 0.0022 28.9 8.6 83 58-154 6-95 (254)
319 PTZ00489 glutamate 5-kinase; P 48.6 1.3E+02 0.0028 29.5 9.4 42 171-214 94-135 (264)
320 PRK05472 redox-sensing transcr 48.4 1.5E+02 0.0033 27.7 9.6 87 57-174 83-172 (213)
321 PF10649 DUF2478: Protein of u 48.3 1.4E+02 0.003 27.2 8.9 103 73-180 19-131 (159)
322 PRK12384 sorbitol-6-phosphate 48.3 70 0.0015 30.0 7.4 82 59-154 3-93 (259)
323 PRK11544 hycI hydrogenase 3 ma 48.0 31 0.00068 30.9 4.7 39 59-97 1-46 (156)
324 TIGR01181 dTDP_gluc_dehyt dTDP 47.9 52 0.0011 31.6 6.6 32 60-92 1-33 (317)
325 COG0552 FtsY Signal recognitio 47.9 33 0.00072 34.9 5.2 35 58-93 139-178 (340)
326 PRK05693 short chain dehydroge 47.8 92 0.002 29.6 8.2 80 60-153 3-83 (274)
327 PRK12767 carbamoyl phosphate s 47.8 59 0.0013 32.0 7.1 49 59-109 2-50 (326)
328 PF04816 DUF633: Family of unk 47.7 7.2 0.00016 36.9 0.5 64 146-220 69-135 (205)
329 PLN02896 cinnamyl-alcohol dehy 47.7 49 0.0011 33.0 6.6 81 55-155 7-92 (353)
330 PLN02948 phosphoribosylaminoim 47.7 39 0.00084 37.0 6.1 40 54-96 18-57 (577)
331 COG0451 WcaG Nucleoside-diphos 47.7 50 0.0011 31.7 6.4 80 59-160 1-82 (314)
332 PRK06179 short chain dehydroge 47.6 1.3E+02 0.0028 28.4 9.2 81 58-154 4-85 (270)
333 TIGR00196 yjeF_cterm yjeF C-te 47.5 1.2E+02 0.0026 29.4 9.1 39 132-174 82-121 (272)
334 PRK00436 argC N-acetyl-gamma-g 47.5 48 0.001 33.6 6.5 30 59-90 3-33 (343)
335 PRK07097 gluconate 5-dehydroge 47.4 93 0.002 29.4 8.2 86 55-154 7-99 (265)
336 cd01078 NAD_bind_H4MPT_DH NADP 47.1 1E+02 0.0022 28.0 8.1 39 57-98 27-66 (194)
337 PRK08605 D-lactate dehydrogena 46.9 29 0.00063 35.1 4.7 38 54-93 142-179 (332)
338 PLN02778 3,5-epimerase/4-reduc 46.9 1.7E+02 0.0037 28.6 10.2 27 56-82 7-34 (298)
339 PRK06019 phosphoribosylaminoim 46.9 33 0.00073 35.0 5.3 35 59-96 3-37 (372)
340 KOG1502 Flavonol reductase/cin 46.9 64 0.0014 32.8 7.1 82 57-158 5-94 (327)
341 PRK08217 fabG 3-ketoacyl-(acyl 46.7 87 0.0019 28.9 7.7 39 57-98 4-43 (253)
342 COG4962 CpaF Flp pilus assembl 46.7 29 0.00062 35.6 4.5 59 153-211 179-255 (355)
343 PRK08340 glucose-1-dehydrogena 46.6 92 0.002 29.3 8.0 81 59-153 1-87 (259)
344 TIGR02198 rfaE_dom_I rfaE bifu 46.5 2.8E+02 0.0062 26.9 11.8 47 130-176 131-177 (315)
345 PLN00016 RNA-binding protein; 46.1 24 0.00053 35.8 4.1 40 51-93 45-89 (378)
346 PRK06500 short chain dehydroge 45.8 95 0.0021 28.7 7.8 83 57-153 5-91 (249)
347 TIGR01214 rmlD dTDP-4-dehydror 45.6 97 0.0021 29.5 8.0 29 60-91 1-30 (287)
348 PRK15469 ghrA bifunctional gly 45.4 34 0.00074 34.3 4.9 35 55-92 133-167 (312)
349 PRK12921 2-dehydropantoate 2-r 45.3 26 0.00057 34.1 4.1 31 59-90 1-31 (305)
350 TIGR02717 AcCoA-syn-alpha acet 45.2 2.2E+02 0.0047 30.1 11.1 38 58-96 7-48 (447)
351 PLN03139 formate dehydrogenase 45.1 22 0.00048 36.9 3.6 36 54-92 195-230 (386)
352 PRK13949 shikimate kinase; Pro 45.0 57 0.0012 29.4 6.0 34 59-95 2-35 (169)
353 PRK00683 murD UDP-N-acetylmura 44.7 28 0.00061 36.0 4.4 35 58-95 3-37 (418)
354 COG1004 Ugd Predicted UDP-gluc 44.6 1.5E+02 0.0033 31.0 9.5 204 59-279 1-258 (414)
355 COG0281 SfcA Malic enzyme [Ene 44.5 28 0.00061 36.5 4.2 41 52-92 193-233 (432)
356 PF00670 AdoHcyase_NAD: S-aden 44.5 46 0.001 30.4 5.2 38 57-97 22-59 (162)
357 PRK15057 UDP-glucose 6-dehydro 44.3 27 0.00059 36.1 4.1 39 59-101 1-39 (388)
358 COG1250 FadB 3-hydroxyacyl-CoA 44.0 15 0.00034 36.9 2.2 39 58-99 3-41 (307)
359 PRK00257 erythronate-4-phospha 43.9 35 0.00075 35.4 4.8 35 55-92 113-147 (381)
360 PRK12825 fabG 3-ketoacyl-(acyl 43.8 62 0.0013 29.7 6.2 83 58-152 6-94 (249)
361 KOG2304 3-hydroxyacyl-CoA dehy 43.8 22 0.00048 34.6 3.1 40 57-99 10-49 (298)
362 PRK07454 short chain dehydroge 43.7 1.3E+02 0.0028 27.7 8.4 37 59-98 7-44 (241)
363 PRK09242 tropinone reductase; 43.7 1.4E+02 0.003 27.9 8.7 82 58-152 9-98 (257)
364 PRK06463 fabG 3-ketoacyl-(acyl 43.6 1.4E+02 0.003 27.9 8.7 83 57-153 6-90 (255)
365 PRK07060 short chain dehydroge 43.6 93 0.002 28.7 7.4 40 56-98 7-47 (245)
366 cd05312 NAD_bind_1_malic_enz N 43.6 28 0.00061 34.6 3.9 39 55-93 22-68 (279)
367 PRK13660 hypothetical protein; 43.6 1.3E+02 0.0027 28.1 8.0 78 132-214 31-111 (182)
368 PRK08462 biotin carboxylase; V 43.5 94 0.002 32.4 8.1 95 59-174 5-103 (445)
369 PLN02274 inosine-5'-monophosph 43.4 2.5E+02 0.0053 30.3 11.3 26 64-92 243-268 (505)
370 cd05191 NAD_bind_amino_acid_DH 43.1 45 0.00098 26.4 4.4 36 55-92 20-55 (86)
371 PRK08265 short chain dehydroge 42.9 1E+02 0.0022 29.2 7.7 84 56-153 4-91 (261)
372 PLN02253 xanthoxin dehydrogena 42.8 1.3E+02 0.0027 28.7 8.3 84 57-154 17-106 (280)
373 PRK06841 short chain dehydroge 42.8 1.4E+02 0.0031 27.7 8.6 82 57-153 14-100 (255)
374 PF02826 2-Hacid_dh_C: D-isome 42.7 51 0.0011 29.9 5.3 77 51-156 29-105 (178)
375 PRK07666 fabG 3-ketoacyl-(acyl 42.6 1.1E+02 0.0024 28.2 7.7 83 57-153 6-95 (239)
376 PF00004 AAA: ATPase family as 42.6 96 0.0021 25.4 6.7 64 154-217 5-70 (132)
377 PF00205 TPP_enzyme_M: Thiamin 42.4 19 0.00041 31.0 2.3 80 134-214 2-87 (137)
378 TIGR03325 BphB_TodD cis-2,3-di 42.2 1.8E+02 0.0039 27.4 9.2 83 57-153 4-90 (262)
379 PRK05557 fabG 3-ketoacyl-(acyl 42.1 2E+02 0.0043 26.2 9.4 27 56-82 3-30 (248)
380 TIGR03215 ac_ald_DH_ac acetald 42.0 44 0.00095 33.3 5.0 90 58-177 1-93 (285)
381 PLN02206 UDP-glucuronate decar 41.7 51 0.0011 34.7 5.7 33 57-92 118-151 (442)
382 PLN02696 1-deoxy-D-xylulose-5- 41.6 2.2E+02 0.0048 30.3 10.3 42 58-99 57-100 (454)
383 PRK12320 hypothetical protein; 41.6 1.1E+02 0.0024 34.3 8.6 31 59-92 1-32 (699)
384 TIGR02440 FadJ fatty oxidation 41.6 19 0.00042 40.2 2.7 43 54-99 300-343 (699)
385 TIGR01915 npdG NADPH-dependent 41.5 44 0.00095 31.4 4.8 37 59-98 1-38 (219)
386 PRK08703 short chain dehydroge 41.1 2.2E+02 0.0047 26.3 9.5 85 56-153 4-98 (239)
387 PLN02712 arogenate dehydrogena 41.1 41 0.00089 37.5 5.1 39 53-94 364-402 (667)
388 PRK06718 precorrin-2 dehydroge 40.5 86 0.0019 29.3 6.6 35 56-93 8-42 (202)
389 PRK08277 D-mannonate oxidoredu 40.4 1.1E+02 0.0023 29.2 7.4 84 56-152 8-97 (278)
390 PRK06436 glycerate dehydrogena 40.3 35 0.00077 34.1 4.1 37 54-93 118-154 (303)
391 PLN02166 dTDP-glucose 4,6-dehy 40.3 69 0.0015 33.6 6.5 33 57-92 119-152 (436)
392 PRK07531 bifunctional 3-hydrox 40.2 40 0.00087 36.0 4.8 38 59-99 5-42 (495)
393 PLN00093 geranylgeranyl diphos 40.2 49 0.0011 34.9 5.3 33 57-92 38-70 (450)
394 PRK05650 short chain dehydroge 40.1 1.1E+02 0.0024 28.9 7.5 82 59-153 1-88 (270)
395 PRK09186 flagellin modificatio 40.1 2.4E+02 0.0052 26.1 9.7 38 57-97 3-41 (256)
396 PRK08125 bifunctional UDP-gluc 40.1 1E+02 0.0022 34.1 8.0 86 50-155 309-395 (660)
397 PRK08220 2,3-dihydroxybenzoate 40.0 2E+02 0.0043 26.6 9.0 80 56-152 6-86 (252)
398 COG0771 MurD UDP-N-acetylmuram 40.0 35 0.00077 36.2 4.2 37 57-96 6-42 (448)
399 PRK14874 aspartate-semialdehyd 39.9 1.5E+02 0.0033 29.9 8.7 35 59-93 2-37 (334)
400 TIGR01124 ilvA_2Cterm threonin 39.9 68 0.0015 34.4 6.4 139 134-278 157-333 (499)
401 TIGR01917 gly_red_sel_B glycin 39.9 86 0.0019 33.0 6.9 49 133-183 325-375 (431)
402 PRK08229 2-dehydropantoate 2-r 39.8 30 0.00064 34.5 3.5 30 59-89 3-32 (341)
403 PRK05479 ketol-acid reductoiso 39.8 28 0.00061 35.4 3.3 33 50-82 9-41 (330)
404 PRK09288 purT phosphoribosylgl 39.6 61 0.0013 32.9 5.9 36 57-95 11-46 (395)
405 PRK09072 short chain dehydroge 39.6 1.3E+02 0.0029 28.2 7.9 39 57-98 4-43 (263)
406 PRK07063 short chain dehydroge 39.5 2E+02 0.0044 26.9 9.1 83 57-153 6-97 (260)
407 TIGR01027 proB glutamate 5-kin 39.4 2.8E+02 0.0061 28.4 10.6 51 166-216 85-135 (363)
408 cd03522 MoeA_like MoeA_like. T 39.4 2E+02 0.0044 29.0 9.4 48 132-183 208-258 (312)
409 PRK05717 oxidoreductase; Valid 39.4 1.7E+02 0.0036 27.4 8.5 83 58-154 10-96 (255)
410 PRK09135 pteridine reductase; 39.4 2.9E+02 0.0062 25.3 10.0 82 57-153 5-96 (249)
411 PLN02686 cinnamoyl-CoA reducta 39.3 75 0.0016 32.2 6.4 29 54-82 49-78 (367)
412 PRK08263 short chain dehydroge 39.3 1.5E+02 0.0034 28.1 8.4 83 58-153 3-88 (275)
413 cd01076 NAD_bind_1_Glu_DH NAD( 39.3 49 0.0011 31.6 4.8 36 54-92 27-63 (227)
414 PRK09009 C factor cell-cell si 39.2 1.5E+02 0.0032 27.2 8.0 77 59-154 1-79 (235)
415 PRK13394 3-hydroxybutyrate deh 39.2 1.4E+02 0.0031 27.8 7.9 84 56-153 5-95 (262)
416 PRK08618 ornithine cyclodeamin 39.2 1.7E+02 0.0037 29.3 8.9 105 54-186 123-229 (325)
417 PF02401 LYTB: LytB protein; 39.2 79 0.0017 31.4 6.3 46 129-178 196-241 (281)
418 PLN02383 aspartate semialdehyd 39.1 1.7E+02 0.0038 29.7 9.0 37 56-92 5-42 (344)
419 PLN02852 ferredoxin-NADP+ redu 39.1 49 0.0011 35.5 5.2 31 50-80 18-48 (491)
420 PF00994 MoCF_biosynth: Probab 39.1 47 0.001 28.9 4.3 26 131-156 45-70 (144)
421 PRK08040 putative semialdehyde 39.0 48 0.001 33.7 4.9 38 56-93 2-40 (336)
422 PRK08654 pyruvate carboxylase 38.9 1.2E+02 0.0027 32.4 8.2 49 59-110 3-53 (499)
423 PRK06200 2,3-dihydroxy-2,3-dih 38.7 1.4E+02 0.0031 28.0 7.9 83 57-153 5-91 (263)
424 PRK10537 voltage-gated potassi 38.6 1.2E+02 0.0025 31.7 7.7 94 58-180 240-337 (393)
425 COG0279 GmhA Phosphoheptose is 38.5 3.3E+02 0.0071 25.3 9.8 117 57-214 40-163 (176)
426 PRK05565 fabG 3-ketoacyl-(acyl 38.5 1.2E+02 0.0027 27.8 7.3 83 58-153 5-94 (247)
427 PRK05294 carB carbamoyl phosph 38.4 86 0.0019 36.9 7.5 36 58-96 7-53 (1066)
428 PRK08463 acetyl-CoA carboxylas 38.3 1.2E+02 0.0026 32.2 7.9 48 59-109 3-52 (478)
429 PRK06079 enoyl-(acyl carrier p 38.3 2E+02 0.0044 27.0 8.9 84 57-154 6-95 (252)
430 PRK12815 carB carbamoyl phosph 38.1 1E+02 0.0022 36.3 8.0 36 58-96 7-53 (1068)
431 smart00852 MoCF_biosynth Proba 38.1 34 0.00073 29.5 3.2 38 130-171 45-82 (135)
432 PRK00258 aroE shikimate 5-dehy 38.0 63 0.0014 31.6 5.5 41 56-98 121-161 (278)
433 PTZ00175 diphthine synthase; P 38.0 2.4E+02 0.0052 27.8 9.5 40 133-174 67-106 (270)
434 PRK05865 hypothetical protein; 38.0 1.5E+02 0.0033 34.1 9.1 71 59-153 1-72 (854)
435 PRK06482 short chain dehydroge 37.9 1.5E+02 0.0032 28.1 8.0 82 59-153 3-87 (276)
436 PRK06111 acetyl-CoA carboxylas 37.8 1.4E+02 0.003 31.0 8.3 35 59-96 3-37 (450)
437 PRK07109 short chain dehydroge 37.8 1.5E+02 0.0032 29.7 8.2 85 54-152 4-95 (334)
438 TIGR03254 oxalate_oxc oxalyl-C 37.6 1.2E+02 0.0027 32.5 8.1 80 130-214 193-275 (554)
439 COG1486 CelF Alpha-galactosida 37.6 1.6E+02 0.0034 31.3 8.5 44 56-99 1-47 (442)
440 PRK08017 oxidoreductase; Provi 37.6 1.7E+02 0.0036 27.2 8.1 36 60-98 4-40 (256)
441 PRK05429 gamma-glutamyl kinase 37.6 2.3E+02 0.005 29.1 9.7 51 166-216 93-143 (372)
442 PRK07832 short chain dehydroge 37.3 2.1E+02 0.0045 27.1 8.9 80 60-153 2-89 (272)
443 PLN03096 glyceraldehyde-3-phos 37.2 53 0.0011 34.3 4.9 34 59-92 61-94 (395)
444 TIGR01832 kduD 2-deoxy-D-gluco 37.0 3.1E+02 0.0066 25.3 9.8 34 56-92 3-37 (248)
445 PLN02989 cinnamyl-alcohol dehy 37.0 1.1E+02 0.0024 29.8 7.1 26 57-82 4-30 (325)
446 TIGR00215 lpxB lipid-A-disacch 36.9 2.9E+02 0.0064 28.2 10.4 131 59-212 6-146 (385)
447 PRK05855 short chain dehydroge 36.9 92 0.002 32.8 6.9 87 54-154 311-404 (582)
448 PRK07890 short chain dehydroge 36.8 1.4E+02 0.0031 27.7 7.5 83 57-152 4-92 (258)
449 COG1893 ApbA Ketopantoate redu 36.8 42 0.0009 33.6 4.0 28 59-87 1-28 (307)
450 PRK05784 phosphoribosylamine-- 36.7 1.9E+02 0.0042 30.9 9.2 33 59-92 1-33 (486)
451 PRK06914 short chain dehydroge 36.7 1.6E+02 0.0034 28.0 7.9 83 58-154 3-93 (280)
452 PRK10084 dTDP-glucose 4,6 dehy 36.6 77 0.0017 31.4 5.9 24 59-82 1-25 (352)
453 PRK05786 fabG 3-ketoacyl-(acyl 36.6 1.7E+02 0.0037 26.8 7.9 38 57-97 4-42 (238)
454 PLN02172 flavin-containing mon 36.6 41 0.00089 35.6 4.1 29 54-82 6-34 (461)
455 PRK08251 short chain dehydroge 36.5 2E+02 0.0044 26.5 8.5 83 59-154 3-93 (248)
456 PHA02518 ParA-like protein; Pr 36.5 2.5E+02 0.0053 25.4 8.9 27 67-96 10-41 (211)
457 PRK12548 shikimate 5-dehydroge 36.5 53 0.0012 32.4 4.7 35 57-93 125-159 (289)
458 PRK05562 precorrin-2 dehydroge 36.4 1.6E+02 0.0035 28.3 7.7 36 57-93 24-59 (223)
459 PLN02649 glucose-6-phosphate i 36.4 1.2E+02 0.0025 33.3 7.5 41 59-99 148-197 (560)
460 TIGR00288 conserved hypothetic 36.3 1.3E+02 0.0029 27.3 6.8 55 141-214 104-158 (160)
461 KOG1494 NAD-dependent malate d 36.2 1E+02 0.0022 31.0 6.4 112 54-187 24-152 (345)
462 PRK08268 3-hydroxy-acyl-CoA de 36.2 54 0.0012 35.2 5.0 39 58-99 7-45 (507)
463 PRK00141 murD UDP-N-acetylmura 35.8 58 0.0013 34.5 5.1 38 54-94 11-48 (473)
464 PRK07814 short chain dehydroge 35.5 1.8E+02 0.0039 27.5 8.1 84 56-152 8-97 (263)
465 cd05014 SIS_Kpsf KpsF-like pro 35.5 2.6E+02 0.0056 23.2 9.6 55 143-215 48-102 (128)
466 PRK06138 short chain dehydroge 35.5 1.2E+02 0.0026 28.0 6.8 84 57-153 4-92 (252)
467 PRK03868 glucose-6-phosphate i 35.4 1.1E+02 0.0024 32.0 7.0 41 59-99 59-103 (410)
468 PRK06523 short chain dehydroge 35.2 3.3E+02 0.0072 25.3 9.8 80 56-153 7-88 (260)
469 PF02629 CoA_binding: CoA bind 34.8 1.5E+02 0.0033 23.9 6.4 39 57-97 2-41 (96)
470 COG2072 TrkA Predicted flavopr 34.7 54 0.0012 34.5 4.6 31 54-84 4-34 (443)
471 TIGR01809 Shik-DH-AROM shikima 34.6 68 0.0015 31.6 5.1 39 57-97 124-162 (282)
472 PRK09536 btuD corrinoid ABC tr 34.5 2.3E+02 0.0049 29.6 9.1 89 56-161 265-356 (402)
473 PRK01045 ispH 4-hydroxy-3-meth 34.5 1.1E+02 0.0024 30.7 6.6 47 128-178 196-242 (298)
474 PRK06139 short chain dehydroge 34.5 1.7E+02 0.0036 29.4 8.0 85 56-153 5-95 (330)
475 PLN02650 dihydroflavonol-4-red 34.1 1.2E+02 0.0027 30.0 7.0 26 57-82 4-30 (351)
476 cd05211 NAD_bind_Glu_Leu_Phe_V 34.1 63 0.0014 30.7 4.6 38 55-94 20-57 (217)
477 TIGR01296 asd_B aspartate-semi 34.1 1.5E+02 0.0032 30.1 7.6 34 60-93 1-35 (339)
478 PRK06181 short chain dehydroge 34.1 2.2E+02 0.0049 26.6 8.5 82 59-153 2-89 (263)
479 PRK09259 putative oxalyl-CoA d 34.1 1.7E+02 0.0037 31.6 8.5 80 130-214 200-282 (569)
480 PRK06928 pyrroline-5-carboxyla 33.8 61 0.0013 31.6 4.6 35 59-93 2-37 (277)
481 PRK08324 short chain dehydroge 33.7 1.5E+02 0.0031 33.0 8.0 86 55-153 419-509 (681)
482 PRK06198 short chain dehydroge 33.7 2.8E+02 0.0062 25.7 9.1 84 56-152 4-94 (260)
483 PRK05294 carB carbamoyl phosph 33.5 2.1E+02 0.0047 33.7 9.7 40 55-97 551-601 (1066)
484 PRK00421 murC UDP-N-acetylmura 33.3 57 0.0012 34.2 4.6 33 57-92 6-39 (461)
485 PTZ00314 inosine-5'-monophosph 33.2 3.7E+02 0.008 28.9 10.7 33 57-92 228-261 (495)
486 PRK05872 short chain dehydroge 33.1 2.2E+02 0.0047 27.6 8.4 85 56-153 7-96 (296)
487 smart00846 Gp_dh_N Glyceraldeh 33.1 60 0.0013 29.0 4.0 39 59-99 1-41 (149)
488 PRK14095 pgi glucose-6-phospha 33.0 1.2E+02 0.0026 32.9 7.0 40 59-99 152-196 (533)
489 PRK06171 sorbitol-6-phosphate 32.9 2.7E+02 0.0058 26.1 8.8 80 56-153 7-88 (266)
490 PRK09533 bifunctional transald 32.8 1.4E+02 0.0031 34.8 7.8 41 59-99 456-499 (948)
491 PLN02358 glyceraldehyde-3-phos 32.7 71 0.0015 32.6 4.9 40 58-99 5-47 (338)
492 PRK14096 pgi glucose-6-phospha 32.7 1.5E+02 0.0033 32.1 7.7 41 59-99 115-158 (528)
493 PRK10264 hydrogenase 1 maturat 32.4 86 0.0019 29.4 5.1 40 58-97 3-51 (195)
494 PLN02350 phosphogluconate dehy 32.3 63 0.0014 34.7 4.7 39 56-97 4-42 (493)
495 TIGR01231 lacC tagatose-6-phos 32.3 2.9E+02 0.0064 26.8 9.2 45 132-176 116-160 (309)
496 PF02558 ApbA: Ketopantoate re 32.1 52 0.0011 28.4 3.4 27 61-88 1-27 (151)
497 TIGR03603 cyclo_dehy_ocin bact 31.9 76 0.0016 32.0 5.0 85 66-174 81-180 (318)
498 PLN02306 hydroxypyruvate reduc 31.8 54 0.0012 34.0 4.0 37 54-93 161-198 (386)
499 PRK13789 phosphoribosylamine-- 31.8 2.2E+02 0.0048 29.8 8.6 32 58-90 4-35 (426)
500 PF05057 DUF676: Putative seri 31.7 35 0.00077 32.1 2.4 31 125-155 59-90 (217)
No 1
>PRK09330 cell division protein FtsZ; Validated
Probab=100.00 E-value=1.8e-77 Score=605.07 Aligned_cols=309 Identities=62% Similarity=0.953 Sum_probs=302.9
Q ss_pred CCCCCCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHhcCCCCCCeeccccccccCCCCCCchhhHHHHHHHH
Q 014946 54 APMETAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSAAENPLQIGDLLTRGLGTGGNPLLGEQAAEESK 133 (415)
Q Consensus 54 ~~~~~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~~~~~ki~ig~~~t~G~GaG~n~~~G~~~aee~~ 133 (415)
......+|+||||||||||+|++|++.++++++|||+|||.|+|..+++++||+||+.+|+|+|+|+||++|+++++++.
T Consensus 9 ~~~~~~~IkViGvGG~G~Nav~~m~~~~~~~v~fia~NTD~q~L~~~~a~~ki~lG~~~t~GlGaG~~pe~G~~aaee~~ 88 (384)
T PRK09330 9 EENQGAVIKVIGVGGGGGNAVNRMIEEGIQGVEFIAANTDAQALLKSKAPVKIQLGEKLTRGLGAGANPEVGRKAAEESR 88 (384)
T ss_pred ccccCCeEEEEEECCcHHHHHHHHHHcCCCCceEEEEeCcHHHHhcCCCCeEEEcCCcccccCCCCCCHHHHHHHHHHHH
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCEEEEeccCCCCccCChHHHHHHHHHHhCCceEEEEecCCCCchhhhHHHHHHHHHHHHhhCCEEEEEeC
Q 014946 134 EVIANALKGSDLVFITAGMGGGTGSGAAPVVAQIAKEAGYLTVGVVTYPFSFEGRKRSSQALEAIERLQKNVDTLIVIPN 213 (415)
Q Consensus 134 e~I~~~le~~D~~~I~agLGGGTGSG~apvia~~ake~g~~tvavvtlP~~~Eg~~r~~nA~~~l~~L~e~~D~viv~dN 213 (415)
++|+++|++||+|||+||||||||||++|+|++++||+|+++|+|||+||.|||.+|++||.++|++|++++|++|+|||
T Consensus 89 e~I~~~l~~~D~vfI~AGmGGGTGTGaapvIA~iake~g~ltvaVvt~PF~fEG~~r~~nA~~gL~~L~~~~D~vIvi~N 168 (384)
T PRK09330 89 EEIREALEGADMVFITAGMGGGTGTGAAPVVAEIAKELGILTVAVVTKPFSFEGKKRMKQAEEGIEELRKHVDTLIVIPN 168 (384)
T ss_pred HHHHHHHcCCCEEEEEecCCCcccHHHHHHHHHHHHHcCCcEEEEEecCccccchhHHHHHHHHHHHHHHHCCEEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhccccCChHHHHhhhhhhhhccccccccccccCceeeechhhhhhhccCCCeeEEEeeecCCcchHHHHHHHHhc
Q 014946 214 DRLLDITDEQTALQDAFLLADDVLRQGVQGISDIITIPGLVNVDFADVKAVMKDSGTAMLGVGVSSSKNRAEEAAEQATL 293 (415)
Q Consensus 214 d~L~~~~~~~~~i~~af~~~N~~i~~~i~~It~~i~~~G~invD~~di~t~L~~~g~~~ig~G~a~g~~ra~~A~~~Al~ 293 (415)
|+|++.++++.++.++|+.+|++|++.|++|++++++||++|+||+|++++|+.+|.++||+|.+++++|+.+|+++|++
T Consensus 169 d~L~~~~~~~~~l~~Af~~ad~vL~~~v~~It~~i~~pG~iNvDfaDvk~vm~~~G~a~~G~G~a~g~~ra~~A~~~Ai~ 248 (384)
T PRK09330 169 DKLLEVVDKKTPLLDAFKAADDVLRQAVQGITDLITKPGLINLDFADVKTVMSEMGLAMMGIGEASGEDRAREAAEKAIS 248 (384)
T ss_pred HHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCHHHHHHHHhcCCeEEEEEEEecCccHHHHHHHHHHh
Confidence 99999998789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccc-cCccccccceEEeecCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeeecCCCCCeEEEEEEEeCC
Q 014946 294 APLIG-SSIQSATGVVYNITGGKDITLQEVNRVSQVVTSLADPSANIIFGAVVDDRYNGEIHVTIIATGF 362 (415)
Q Consensus 294 spll~-~~i~~a~g~Lv~I~gg~disl~ev~~i~~~i~~~~~~~a~Ii~G~~~d~~l~~~i~VtvIatG~ 362 (415)
+|||+ .++.+|+++|++|+++++++++|++++++.+++..+++++|+||..++|+++++++|||||||+
T Consensus 249 spLl~~~~i~~A~~vLv~I~g~~~l~l~e~~~~~~~i~~~~~~~a~Ii~G~~~d~~l~~~i~VtviatG~ 318 (384)
T PRK09330 249 SPLLEDVDISGAKGVLVNITGGPDLTLFEVEEAAEIIREAADPDANIIFGTVIDEELGDEIRVTVIATGF 318 (384)
T ss_pred CcCcCCCChhhcceEEEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeeeCCCcCCeEEEEEEEccC
Confidence 99998 6899999999999999999999999999999999999999999999999999999999999999
No 2
>PRK13018 cell division protein FtsZ; Provisional
Probab=100.00 E-value=2.1e-75 Score=589.52 Aligned_cols=314 Identities=52% Similarity=0.807 Sum_probs=306.2
Q ss_pred cCCCCCCCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHhcCCCCCCeeccccccccCCCCCCchhhHHHHHH
Q 014946 52 SFAPMETAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSAAENPLQIGDLLTRGLGTGGNPLLGEQAAEE 131 (415)
Q Consensus 52 ~~~~~~~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~~~~~ki~ig~~~t~G~GaG~n~~~G~~~aee 131 (415)
+..+...+||+||||||||||+||+|++.++.+++|+|+|||.|+|..+++++|+++|+.+|+|+|+|+||++|++++++
T Consensus 22 ~~~~~~~~~I~ViGvGGaG~N~v~~m~~~~~~~v~~iaiNTD~q~L~~~~a~~ki~iG~~~t~G~GaG~dp~~G~~aaee 101 (378)
T PRK13018 22 SDDDFGNPKIVVVGCGGAGNNTINRLYEIGIEGAETIAINTDAQHLAMIKADKKILIGKSLTRGLGAGGDPEVGRKAAEE 101 (378)
T ss_pred cccccCCCeEEEEEeCCcHHHHHHHHHHcCCCCceEEEEECCHHHHhcCCCCcEEecCCccCCCCCCCCChHHHHHHHHH
Confidence 56677789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCEEEEeccCCCCccCChHHHHHHHHHHhCCceEEEEecCCCCchhhhHHHHHHHHHHHHhhCCEEEEE
Q 014946 132 SKEVIANALKGSDLVFITAGMGGGTGSGAAPVVAQIAKEAGYLTVGVVTYPFSFEGRKRSSQALEAIERLQKNVDTLIVI 211 (415)
Q Consensus 132 ~~e~I~~~le~~D~~~I~agLGGGTGSG~apvia~~ake~g~~tvavvtlP~~~Eg~~r~~nA~~~l~~L~e~~D~viv~ 211 (415)
+.++|++++++||+|||+||||||||||++|+|++++|+++++++++|++||.+||.+|++||.++|++|++++|++|+|
T Consensus 102 ~~d~I~~~le~~D~vfI~aGLGGGTGSGaapvIa~iake~g~ltv~vVt~Pf~~EG~~r~~nA~~gL~~L~e~~D~vivi 181 (378)
T PRK13018 102 SRDEIKEVLKGADLVFVTAGMGGGTGTGAAPVVAEIAKEQGALVVGVVTKPFKFEGRARMQKAEEGIERLREAADTVIVI 181 (378)
T ss_pred HHHHHHHHhcCCCEEEEEeeccCcchhhHHHHHHHHHHHcCCCeEEEEEcCcccccHhHHHHHHHHHHHHHHhCCEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCchhhhhccccCChHHHHhhhhhhhhccccccccccccCceeeechhhhhhhccCCCeeEEEeeecCCcchHHHHHHHH
Q 014946 212 PNDRLLDITDEQTALQDAFLLADDVLRQGVQGISDIITIPGLVNVDFADVKAVMKDSGTAMLGVGVSSSKNRAEEAAEQA 291 (415)
Q Consensus 212 dNd~L~~~~~~~~~i~~af~~~N~~i~~~i~~It~~i~~~G~invD~~di~t~L~~~g~~~ig~G~a~g~~ra~~A~~~A 291 (415)
|||+|++++ .++++.++|+.+|++|++.|++|++++++||.+|+||+|++++|..+|.++||+|.+++.+|+.+|+++|
T Consensus 182 dNd~L~~i~-~~~~i~~af~~~N~iIa~~I~~It~~i~~~G~iN~Df~dv~~vl~~~G~a~iG~G~a~g~~r~~~Av~~A 260 (378)
T PRK13018 182 DNNRLLDIV-PNLPIADAFSVADEVIAETVKGITETITKPSLINLDFADVKSVMKGGGVAMMGVGEAKGQNRAMEAVRAA 260 (378)
T ss_pred ecHHHHHHH-hcCCHHHHHHHHHHHHHHHHHhhhhhcccCCceecCHHHHHHHhccCCEEEEEEEEecCCcHHHHHHHHH
Confidence 999999999 6899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccccCccccccceEEeecCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeeecCCCCCeEEEEEEEeCCCccc
Q 014946 292 TLAPLIGSSIQSATGVVYNITGGKDITLQEVNRVSQVVTSLADPSANIIFGAVVDDRYNGEIHVTIIATGFSQSF 366 (415)
Q Consensus 292 l~spll~~~i~~a~g~Lv~I~gg~disl~ev~~i~~~i~~~~~~~a~Ii~G~~~d~~l~~~i~VtvIatG~~~~~ 366 (415)
+++|||+.++.+|+++|++|+++++++++|++++.+.+++..+++++|+||.+++|+++++++||+||||+..+.
T Consensus 261 l~spLL~~di~~A~~~Lv~I~g~~~l~l~ev~~~~~~i~~~~~~~a~Ii~G~~~d~~l~~~v~VtvIatG~~~~~ 335 (378)
T PRK13018 261 LANPLLDVDYRGAKGALVHITGGPDLTLKEANEAASRITEELDPEANIIWGARIDPDMEGKVRVMVIMTGVKSAQ 335 (378)
T ss_pred HhCCCcCCChhhhceEEEEEECCCCCCHHHHHHHHHHHHHHcCCCCeEEEEEeeCCCCCCcEEEEEEEeCCCCcc
Confidence 999999999999999999999999999999999999999999989999999999999999999999999997644
No 3
>TIGR00065 ftsZ cell division protein FtsZ. This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.
Probab=100.00 E-value=3.4e-74 Score=577.91 Aligned_cols=312 Identities=56% Similarity=0.889 Sum_probs=302.7
Q ss_pred CCCCCCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHhcCCCCCCeeccccccccCCCCCCchhhHHHHHHHH
Q 014946 54 APMETAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSAAENPLQIGDLLTRGLGTGGNPLLGEQAAEESK 133 (415)
Q Consensus 54 ~~~~~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~~~~~ki~ig~~~t~G~GaG~n~~~G~~~aee~~ 133 (415)
.|..+++|+||||||||||+||+|++.++.+++|+|+|||.++|+.+++++|+++|+..|+|+|+|+||++|++++++++
T Consensus 13 ~~~~~~~i~viGvGg~G~n~v~~l~~~~~~~~~~iainTD~~~L~~~~a~~ki~iG~~~t~G~GaG~~~~~G~~~aee~~ 92 (349)
T TIGR00065 13 QPSNKAKIKVIGVGGGGNNTVNRMLEEGVEGVEFIAINTDAQHLKTTKADKKILIGKKLTRGLGAGGNPEIGRKAAEESR 92 (349)
T ss_pred CcccCCeEEEEEeCCcHHHHHHHHHHcCCCceEEEEEECCHHHHhcCCCCeEEEcCCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 35556899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCEEEEeccCCCCccCChHHHHHHHHHHhCCceEEEEecCCCCchhhhHHHHHHHHHHHHhhCCEEEEEeC
Q 014946 134 EVIANALKGSDLVFITAGMGGGTGSGAAPVVAQIAKEAGYLTVGVVTYPFSFEGRKRSSQALEAIERLQKNVDTLIVIPN 213 (415)
Q Consensus 134 e~I~~~le~~D~~~I~agLGGGTGSG~apvia~~ake~g~~tvavvtlP~~~Eg~~r~~nA~~~l~~L~e~~D~viv~dN 213 (415)
++|++++++||+|||+||||||||||++|+|++++|++++++++|+|+||.+||.+|+|||.++|++|++++|++|+|||
T Consensus 93 d~Ir~~le~~D~vfI~aglGGGTGSG~apvia~~ake~~~l~vaivt~Pf~~Eg~~r~~nA~~~l~~L~~~~D~vividN 172 (349)
T TIGR00065 93 DEIRKLLEGADMVFITAGMGGGTGTGAAPVVAKIAKELGALTVAVVTKPFKFEGLKRRKKAEEGLERLKQAVDTLIVIPN 172 (349)
T ss_pred HHHHHHHhCCCEEEEEEeccCccchhHHHHHHHHHHHcCCCEEEEEeCCccccchhhHHHHHHHHHHHHHhCCEEEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhccccCChHHHHhhhhhhhhccccccccccccCceeeechhhhhhhccCCCeeEEEeeecCCcc---hHHHHHHH
Q 014946 214 DRLLDITDEQTALQDAFLLADDVLRQGVQGISDIITIPGLVNVDFADVKAVMKDSGTAMLGVGVSSSKN---RAEEAAEQ 290 (415)
Q Consensus 214 d~L~~~~~~~~~i~~af~~~N~~i~~~i~~It~~i~~~G~invD~~di~t~L~~~g~~~ig~G~a~g~~---ra~~A~~~ 290 (415)
|+|++.++. +++.++|+.+|++|++.+++|++++++||.+|+||+|++++|+++|.++||+|.+++.+ |+.+|+++
T Consensus 173 d~L~~~~~~-~~i~~af~~~N~iia~~i~~it~~ir~~g~iNvDf~dv~~vl~~~G~a~iG~g~~~g~~~~~r~~~A~~~ 251 (349)
T TIGR00065 173 DKLLEVVPN-LPLNDAFKVADDVLVRAVKGISELITKPGLINIDFADVRAVMSGGGVAMMGIGEALGEDTANRAFEAVRK 251 (349)
T ss_pred HHHHHhhcC-CCHHHHHHHHHHHHHHHHHhHHHhhccCCcCcCCHHHHHHHHhcCCeEEEEEEEecCCcchHHHHHHHHH
Confidence 999999976 89999999999999999999999999999999999999999999999999999999999 89999999
Q ss_pred HhcccccccC-ccccccceEEeecCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeeecCCCCCeEEEEEEEeCCCccc
Q 014946 291 ATLAPLIGSS-IQSATGVVYNITGGKDITLQEVNRVSQVVTSLADPSANIIFGAVVDDRYNGEIHVTIIATGFSQSF 366 (415)
Q Consensus 291 Al~spll~~~-i~~a~g~Lv~I~gg~disl~ev~~i~~~i~~~~~~~a~Ii~G~~~d~~l~~~i~VtvIatG~~~~~ 366 (415)
|+++||++.+ +.+|+++|++|+++++++++|++++++.+++..+++++|+||+.++|+++++++||+||||+..+.
T Consensus 252 al~~pLl~~~~i~~A~~~Lv~i~~~~~l~l~ev~~~~~~i~~~~~~~~~Ii~G~~~d~~l~~~i~VtiIatG~~~~~ 328 (349)
T TIGR00065 252 ALSSPLLDVDKISGAKGALVHITGGADLTLLEAEEIQEIITSELDQDANIIWGAIIDPNLEDEIRVTIVATGVKSQI 328 (349)
T ss_pred HHhCCCcCCcccccccEEEEEEEcCCCCCHHHHHHHHHHHHHhcCCCCeEEEEEeeCcccCCcEEEEEEEecCCccc
Confidence 9999999864 999999999999999999999999999999999999999999999999999999999999998654
No 4
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=100.00 E-value=1.1e-72 Score=559.15 Aligned_cols=303 Identities=63% Similarity=0.975 Sum_probs=296.7
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHhcCCCCCCeeccccccccCCCCCCchhhHHHHHHHHHHHHH
Q 014946 59 AKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSAAENPLQIGDLLTRGLGTGGNPLLGEQAAEESKEVIAN 138 (415)
Q Consensus 59 ~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~~~~~ki~ig~~~t~G~GaG~n~~~G~~~aee~~e~I~~ 138 (415)
.||+||||||||||+||+|++.+++++++||+|||.++|+.+++++|+++|+..|+|+|+|+||++|+++++++.++|++
T Consensus 1 ~~i~viGvGg~G~n~v~~l~~~~~~~~~~~a~ntD~~~L~~~~~~~k~~ig~~~t~g~Gag~~~~~g~~~a~~~~~~I~~ 80 (304)
T cd02201 1 AKIKVIGVGGGGGNAVNRMIESGLEGVEFIAANTDAQALAKSKAPNKIQLGKELTRGLGAGGDPEVGRKAAEESREEIKE 80 (304)
T ss_pred CeEEEEEeCCcHHHHHHHHHHcCCCCceEEEEECCHHHHhcCCCCcEEEcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCEEEEeccCCCCccCChHHHHHHHHHHhCCceEEEEecCCCCchhhhHHHHHHHHHHHHhhCCEEEEEeCchhhh
Q 014946 139 ALKGSDLVFITAGMGGGTGSGAAPVVAQIAKEAGYLTVGVVTYPFSFEGRKRSSQALEAIERLQKNVDTLIVIPNDRLLD 218 (415)
Q Consensus 139 ~le~~D~~~I~agLGGGTGSG~apvia~~ake~g~~tvavvtlP~~~Eg~~r~~nA~~~l~~L~e~~D~viv~dNd~L~~ 218 (415)
++++||+|||+||||||||||++|+++++++++++++++|+|+||.+|+.+++|||.+++++|++++|++++||||+|++
T Consensus 81 ~l~~~d~v~i~aglGGGTGSG~ap~ia~~a~e~g~~~~~vvt~Pf~~Eg~~~~~nA~~~l~~L~~~~d~~ividN~~L~~ 160 (304)
T cd02201 81 ALEGADMVFITAGMGGGTGTGAAPVIAKIAKEMGALTVAVVTKPFSFEGKKRMRQAEEGLEELRKHVDTLIVIPNDKLLE 160 (304)
T ss_pred HHhCCCEEEEeeccCCCcchhHHHHHHHHHHHcCCCEEEEEeCCccccchhHHHHHHHHHHHHHHhCCEEEEEecHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccCChHHHHhhhhhhhhccccccccccccCceeeechhhhhhhccCCCeeEEEeeecCCcchHHHHHHHHhcccccc
Q 014946 219 ITDEQTALQDAFLLADDVLRQGVQGISDIITIPGLVNVDFADVKAVMKDSGTAMLGVGVSSSKNRAEEAAEQATLAPLIG 298 (415)
Q Consensus 219 ~~~~~~~i~~af~~~N~~i~~~i~~It~~i~~~G~invD~~di~t~L~~~g~~~ig~G~a~g~~ra~~A~~~Al~spll~ 298 (415)
.+++++++.++|+.+|+++++.+++|+++++++|.+|+||+|++++|+.+|.++|++|.+.+.+|+.+|+++|+++||++
T Consensus 161 ~~~~~~~i~~af~~~n~~ia~~i~~it~~~~~~g~invD~~dv~~vl~~~G~a~ig~g~~~g~~r~~~Av~~Al~~pLl~ 240 (304)
T cd02201 161 VVDKNLPLLEAFKLADDVLAQAVKGISDLITKPGLINLDFADVKTVMKNKGVALMGIGEASGENRAIEAAEKAISSPLLE 240 (304)
T ss_pred hhccCCCHHHHHHHHHHHHHHHHHHHHHHhccCccccCCHHHHHHHhccCCeEEEEEEEecCchHHHHHHHHHHhCcCcC
Confidence 99877999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred c-CccccccceEEeecCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeeecCCCCCeEEEEEEEeC
Q 014946 299 S-SIQSATGVVYNITGGKDITLQEVNRVSQVVTSLADPSANIIFGAVVDDRYNGEIHVTIIATG 361 (415)
Q Consensus 299 ~-~i~~a~g~Lv~I~gg~disl~ev~~i~~~i~~~~~~~a~Ii~G~~~d~~l~~~i~VtvIatG 361 (415)
. ++.+|+++|++|+++++++++|++++++.+++..+++++|+||++++|+++++++||+|+||
T Consensus 241 ~~~i~~A~~~Lv~I~~~~~l~l~e~~~~~~~i~~~~~~~~~ii~G~~~d~~l~~~v~Vtiiatg 304 (304)
T cd02201 241 DDSISGAKGVLVNITGGSDLTLEEVNEAAEIIKEKVDPDANIIFGATIDESLEDEIRVTVIATG 304 (304)
T ss_pred CCChhcccEEEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeeeCCCCCCeEEEEEEEeC
Confidence 5 59999999999999999999999999999999999999999999999999999999999998
No 5
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=100.00 E-value=1.2e-72 Score=558.00 Aligned_cols=302 Identities=45% Similarity=0.674 Sum_probs=295.5
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHhcCCCCCCeeccccccccCCCCCCchhhHHHHHHHHHHHHH
Q 014946 59 AKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSAAENPLQIGDLLTRGLGTGGNPLLGEQAAEESKEVIAN 138 (415)
Q Consensus 59 ~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~~~~~ki~ig~~~t~G~GaG~n~~~G~~~aee~~e~I~~ 138 (415)
|||+|||+||||||+||+|++.++.+++|+|+|||.++|+.+++++|+++|+..|+|+|+|+||++|+++++++.++|++
T Consensus 1 ~~i~viGvGg~G~n~v~~~~~~~~~~~~~iainTd~~~L~~~~a~~ki~iG~~~t~g~GaG~~~~~G~~~a~e~~~~I~~ 80 (303)
T cd02191 1 AKIAVIGFGGAGGNIVDKFLEYDKEGRSAVAVNTDAQDLLGLEAENRVLIGQARTKGLGAGANPELGAEAAEEVQEAIDN 80 (303)
T ss_pred CEEEEEEECchHHHHHHHHHHcCCCCccEEEEECcHHHHhcCCCCcEEecCCccccCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999989999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCEEEEeccCCCCccCChHHHHHHHHHHhCCceEEEEecCCCCchhhhHHHHHHHHHHHHhhCCEEEEEeCchhhh
Q 014946 139 ALKGSDLVFITAGMGGGTGSGAAPVVAQIAKEAGYLTVGVVTYPFSFEGRKRSSQALEAIERLQKNVDTLIVIPNDRLLD 218 (415)
Q Consensus 139 ~le~~D~~~I~agLGGGTGSG~apvia~~ake~g~~tvavvtlP~~~Eg~~r~~nA~~~l~~L~e~~D~viv~dNd~L~~ 218 (415)
++++||+|||+||||||||||++|+|++++||.++++|+|+|+||.+|+.+++|||.++|++|++++|++|+||||+|++
T Consensus 81 ~le~~D~v~i~aglGGGTGSG~ap~ia~~~ke~~~~~~~vvt~Pf~~Eg~~~~~NA~~~l~~L~~~~D~~iv~dN~~L~~ 160 (303)
T cd02191 81 IPVHVDMVFITAGLGGGTGTGGAPVVAEHLKRIGTLTVAVVTLPFSDEGGIRMLNAAEGFQTLVREVDNLMVIPNEKLRQ 160 (303)
T ss_pred HHcCCCEEEEEeccCCccchhHHHHHHHHHHHhCCCEEEEEeCCcccCCccchhhHHHHHHHHHHhCCEEEEEehHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccCChHHHHhhhhhhhhccccccccccccCceeeechhhhhhhccCCCeeEEEeeecCCcchHHHHHHHHhcccccc
Q 014946 219 ITDEQTALQDAFLLADDVLRQGVQGISDIITIPGLVNVDFADVKAVMKDSGTAMLGVGVSSSKNRAEEAAEQATLAPLIG 298 (415)
Q Consensus 219 ~~~~~~~i~~af~~~N~~i~~~i~~It~~i~~~G~invD~~di~t~L~~~g~~~ig~G~a~g~~ra~~A~~~Al~spll~ 298 (415)
.+.. ++++++|+.+|+++++.+++|++++++||.+|+||+|++++|+.+|.+++|+|.+++.+|+.+|+++|+++||++
T Consensus 161 ~~~~-~~~~~af~~~N~~ia~~i~~it~~i~~~g~invD~~dv~~~l~~~G~a~ig~g~~~g~~~~~~a~~~Al~~pll~ 239 (303)
T cd02191 161 IGEK-ASLEGAFDHADEVLVRAVGGLFGAIEIEGEINVDFADVKNVMDGGGVAMVGYGSEDVTNRATEAVRKAALGPLLL 239 (303)
T ss_pred Hhhc-CChHHHHHHHHHHHHHHHHHHHHhhccCCcccCCHHHHHHHhccCCeEEEEEEEecCchHHHHHHHHHHhCCCCC
Confidence 9874 889999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred -cCccccccceEEeecCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeeecCCCCCeEEEEEEEeC
Q 014946 299 -SSIQSATGVVYNITGGKDITLQEVNRVSQVVTSLADPSANIIFGAVVDDRYNGEIHVTIIATG 361 (415)
Q Consensus 299 -~~i~~a~g~Lv~I~gg~disl~ev~~i~~~i~~~~~~~a~Ii~G~~~d~~l~~~i~VtvIatG 361 (415)
.++.+|+++|++|.++++++++|++++.+.+++..+++++|+||.+++|+++++++||||+||
T Consensus 240 ~~~~~~A~~~Lv~i~g~~~l~~~e~~~~~~~i~~~~~~~~~i~~G~~~~~~~~~~v~v~vi~tg 303 (303)
T cd02191 240 PCEIEGAEGALLVMAGPPDLNLKEIERVRKWLEEQTGESATVRGGDYIDNAPRDKVAVSIVLTG 303 (303)
T ss_pred CCCcccCCEEEEEEECCCCCCHHHHHHHHHHHHHHcCCCCeEEEeeeeCCCCCCeEEEEEEecC
Confidence 689999999999999999999999999999999999899999999999999999999999998
No 6
>COG0206 FtsZ Cell division GTPase [Cell division and chromosome partitioning]
Probab=100.00 E-value=3.3e-71 Score=549.07 Aligned_cols=309 Identities=56% Similarity=0.869 Sum_probs=303.8
Q ss_pred CCCCCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHhcCCCCCCeeccccccccCCCCCCchhhHHHHHHHHH
Q 014946 55 PMETAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSAAENPLQIGDLLTRGLGTGGNPLLGEQAAEESKE 134 (415)
Q Consensus 55 ~~~~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~~~~~ki~ig~~~t~G~GaG~n~~~G~~~aee~~e 134 (415)
....+||+|||+||||+|+||+|++.++++++++++|||.|+|.++++++|+++|+.+|+|+|+|+||++|+++++++++
T Consensus 8 ~~~~~~I~VIGvGg~G~n~v~~m~~~~~~gve~ia~nTD~q~L~~~~a~~ki~iG~~~t~GlGaGa~P~vG~~aAee~~~ 87 (338)
T COG0206 8 ESLKARIKVIGVGGAGGNAVNRMIEEGVEGVEFIAINTDAQALKSSKADRKILIGESITRGLGAGANPEVGRAAAEESIE 87 (338)
T ss_pred cccCceEEEEEeCCcchHHHHHHHHhhhCceEEEEeccCHHHHhccccCeEEEeccceeeccCCCCCcHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCEEEEeccCCCCccCChHHHHHHHHHHhCCceEEEEecCCCCchhhhHHHHHHHHHHHHhhCCEEEEEeCc
Q 014946 135 VIANALKGSDLVFITAGMGGGTGSGAAPVVAQIAKEAGYLTVGVVTYPFSFEGRKRSSQALEAIERLQKNVDTLIVIPND 214 (415)
Q Consensus 135 ~I~~~le~~D~~~I~agLGGGTGSG~apvia~~ake~g~~tvavvtlP~~~Eg~~r~~nA~~~l~~L~e~~D~viv~dNd 214 (415)
+|++.++++|+|||++|||||||||++|+|++++||+|++||+|+|+||.+||.+|+.||..++++|++++|++|+||||
T Consensus 88 ~I~~~l~g~dmvfitaG~GGGTGtGaaPVvakiake~g~ltvavvt~Pf~~EG~~r~~~A~~gi~~L~~~~DtlIvi~Nd 167 (338)
T COG0206 88 EIEEALKGADMVFVTAGMGGGTGTGAAPVVAEIAKELGALTVAVVTLPFSFEGSPRMENAEEGIEELREVVDTLIVIPND 167 (338)
T ss_pred HHHHHhccCCeEEEEeeecCCccccccHHHHHHHHhcCCcEEEEEEecchhcCchHHHHHHHHHHHHHHhCCcEEEEecH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccccCChHHHHhhhhhhhhccccccccccccCceeeechhhhhhhccCCCeeEEEeeecCCcchHHHHHHHHhcc
Q 014946 215 RLLDITDEQTALQDAFLLADDVLRQGVQGISDIITIPGLVNVDFADVKAVMKDSGTAMLGVGVSSSKNRAEEAAEQATLA 294 (415)
Q Consensus 215 ~L~~~~~~~~~i~~af~~~N~~i~~~i~~It~~i~~~G~invD~~di~t~L~~~g~~~ig~G~a~g~~ra~~A~~~Al~s 294 (415)
+|++..+ +.++.+||..+|+++.+.+++|++.+..||++|+||+|++++|+++|.+.||+|.+.+.+|+.+|+++|+++
T Consensus 168 kll~~~~-~~~~~~Af~~ad~vl~~~v~~i~e~I~~~glinvDfaDv~~vm~~~G~A~mG~g~~~~~~r~~~a~~~A~~~ 246 (338)
T COG0206 168 KLLKGKD-KTPIAEAFNEADDVLGNAVKGITELITKPGLVNVDFADVRTVMKGGGFALMGIGRASGEDRAREAVEKALNS 246 (338)
T ss_pred HHHhccC-cccHHHHHHHHHHHHHHHHHHHHHHhccCceEeecHHHHHHHHhcCCceeEEEeeccchhHHHHHHHHHhcC
Confidence 9999998 899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccc-cCccccccceEEeecCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeeecCCCCCeEEEEEEEeCCCc
Q 014946 295 PLIG-SSIQSATGVVYNITGGKDITLQEVNRVSQVVTSLADPSANIIFGAVVDDRYNGEIHVTIIATGFSQ 364 (415)
Q Consensus 295 pll~-~~i~~a~g~Lv~I~gg~disl~ev~~i~~~i~~~~~~~a~Ii~G~~~d~~l~~~i~VtvIatG~~~ 364 (415)
|||+ .++.+|+++|++|+++.|+++.|++++.+.+++..+++++|+||..++|.+.++++|++|+||+..
T Consensus 247 pLl~~~~i~gA~~~Lv~i~g~~dl~l~ev~~~~~~i~~~i~~~~~vi~G~~~d~~~~~~v~v~vi~tg~~~ 317 (338)
T COG0206 247 PLLDDVDIEGAKGALINITGGKDLTLEEVEEALERIQEIIDPDADVIWGAYIDPGLRDEVRVLVIATGIRS 317 (338)
T ss_pred CcccccccccccceEEEEecCCccCHHHHHHHHHHHHHHhCCCceEEEccccCCCCCceEEEEEEEecccc
Confidence 9998 789999999999999999999999999999999999999999999999999999999999999986
No 7
>cd02202 FtsZ_type2 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=100.00 E-value=3.2e-61 Score=484.99 Aligned_cols=300 Identities=23% Similarity=0.339 Sum_probs=278.4
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCc-----eEEEEEECCHHHHhcC---CCCCCeeccccccccCCCCCCchhhHHHHH
Q 014946 59 AKIKVVGVGGGGNNAVNRMIGSGLQG-----VDFYAINTDSQALLQS---AAENPLQIGDLLTRGLGTGGNPLLGEQAAE 130 (415)
Q Consensus 59 ~~i~vIGvGgaG~niv~~l~~~~~~~-----v~~iainTD~~~L~~~---~~~~ki~ig~~~t~G~GaG~n~~~G~~~ae 130 (415)
|||+|||+||||||+|++|++.+.+. ++++++|||.++|+++ ++++|+++|+..++|+|+|+||++|+++++
T Consensus 1 m~i~viGvGg~G~niv~~l~~~~~~~~~~~~~~~iavntD~~~L~~l~~~~~~~ki~~g~~~t~G~GaG~~~~~G~~~ae 80 (349)
T cd02202 1 MRVLIIGVGQAGGRIVDALNRHDKRSGFGYCVGALAINTAKNDLKGLKHIPAEDRILIGQSEVKGHGVGADRELGAEVAE 80 (349)
T ss_pred CEEEEEEeCCcHHHHHHHHHHhCCCcCCccceeEEEEECCHHHHHhhhcCCCCCEEEecCcccCCCCCCCChHHHHHHHH
Confidence 79999999999999999999988776 8999999999999854 789999999999999999999999999999
Q ss_pred HHHHHHHHHhcC-----CCEEEEeccCCCCccCChHHHHHHHHHHh-CCceEEEEecCCCCchhhhHHHHHHHHHHHHhh
Q 014946 131 ESKEVIANALKG-----SDLVFITAGMGGGTGSGAAPVVAQIAKEA-GYLTVGVVTYPFSFEGRKRSSQALEAIERLQKN 204 (415)
Q Consensus 131 e~~e~I~~~le~-----~D~~~I~agLGGGTGSG~apvia~~ake~-g~~tvavvtlP~~~Eg~~r~~nA~~~l~~L~e~ 204 (415)
++.++|++++++ +|+|||+||||||||||++|+|++++|+. ++++++++++||.+|+.+++|||.++|++|+++
T Consensus 81 e~~e~I~~~le~~~~~~~d~~~i~aglGGGTGsG~~p~iae~lke~~~~~~~~iv~~P~~~eg~~~~~NA~~~l~~L~~~ 160 (349)
T cd02202 81 EDLEEVMRAIDDRGTSDADAILVIAGLGGGTGSGGAPVLAKELKERYEEPVYALGVLPAREEGERYSANAARSLDALSEE 160 (349)
T ss_pred HHHHHHHHHHhccccccccEEEEecccCCCccccHHHHHHHHHHHhCCccEEEEEEecCCCCCchhhHHHHHHHHHHHHh
Confidence 999999999997 67999999999999999999999999996 479999999999999999999999999999999
Q ss_pred CCEEEEEeCchhhhhccccCChHHHHhhhhhhhhcccccccccccc-----CceeeechhhhhhhccCCCeeEEEeeecC
Q 014946 205 VDTLIVIPNDRLLDITDEQTALQDAFLLADDVLRQGVQGISDIITI-----PGLVNVDFADVKAVMKDSGTAMLGVGVSS 279 (415)
Q Consensus 205 ~D~viv~dNd~L~~~~~~~~~i~~af~~~N~~i~~~i~~It~~i~~-----~G~invD~~di~t~L~~~g~~~ig~G~a~ 279 (415)
+|++|+||||+|++.+ .++.++|+.+|++|++.+..++..+++ +|.+|+||+|++++|+++|++.+|.|.++
T Consensus 161 ~D~viv~dNd~L~~~~---~~~~~~f~~~N~~Ia~~i~~l~~~~r~~~~~~~g~invD~~dv~~~L~~~G~~~iG~g~~~ 237 (349)
T cd02202 161 ADAIILFDNDAWKRKG---ESVEEAYDRINEEIARRIGLLLRAGEANAGDSVGESVLDASEVINTLSGGGFATIGYARED 237 (349)
T ss_pred CCEEEEEehHHHhhhc---cchHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCeEeccHHHHHHHhccCCeEEEEEEEEc
Confidence 9999999999999975 357899999999999999999999888 99999999999999999999999999998
Q ss_pred C-----------------------cchHHHHHHHHhcccccc-cCccccccceEEeecCCC-CCHHHHHHHHHHHHhhcC
Q 014946 280 S-----------------------KNRAEEAAEQATLAPLIG-SSIQSATGVVYNITGGKD-ITLQEVNRVSQVVTSLAD 334 (415)
Q Consensus 280 g-----------------------~~ra~~A~~~Al~spll~-~~i~~a~g~Lv~I~gg~d-isl~ev~~i~~~i~~~~~ 334 (415)
+ .+|+.+|+++|+.+||+. +++.+|+++|++|.++++ ++++|++++.+.+++..+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~a~~~a~~~~L~~~~d~~~A~~~Li~i~g~~~~l~~~~~~~~~~~i~~~~~ 317 (349)
T cd02202 238 LETGPSDGKFRLREEDDEVDEKESISRITTLARKAAYGELTVPCDLTSADRALIVIAGPPEELSRKGIEDGRKWLDEEIG 317 (349)
T ss_pred ccccccccccccccccccccccchhhHHHHHHHHHHcCCCCCCCCcccCcEEEEEEEeCccccCHHHHHHHHHHHHHHcC
Confidence 7 689999999999999974 899999999999999884 999999999999999876
Q ss_pred CCCcEEEEeeecCCC-CCeEEEEEEEeCCCc
Q 014946 335 PSANIIFGAVVDDRY-NGEIHVTIIATGFSQ 364 (415)
Q Consensus 335 ~~a~Ii~G~~~d~~l-~~~i~VtvIatG~~~ 364 (415)
++.|+...+|.. .++++||||+||+..
T Consensus 318 ---~~~~~~g~~p~~~~~~v~v~vi~tG~~~ 345 (349)
T cd02202 318 ---GVEVRSGDYPVPGGDEVAVLVLLSGISE 345 (349)
T ss_pred ---CeEEEEEecCCCCCCeEEEEEEEcCCCC
Confidence 466666666665 469999999999964
No 8
>cd00286 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation. Tubulin is the major component of microtubules, but also exists as a heterodimer and as a curved oligomer. Microtubules exist in all eukaryotic cells and are responsible for many functions, including cellular transport, cell motility, and mitosis. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerize into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria, archaea, and chloroplasts.
Probab=100.00 E-value=1.5e-42 Score=347.01 Aligned_cols=295 Identities=22% Similarity=0.302 Sum_probs=247.0
Q ss_pred eEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHhcCCCC---CCeeccccccccCCCCCCchhhHHH-----HHH
Q 014946 60 KIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSAAE---NPLQIGDLLTRGLGTGGNPLLGEQA-----AEE 131 (415)
Q Consensus 60 ~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~~~~---~ki~ig~~~t~G~GaG~n~~~G~~~-----aee 131 (415)
+|++||+||||++|+++|++.. ++||||.+.|+.+... ..+.++..++++.|+|+||++|+.+ .|+
T Consensus 1 eii~i~iG~~G~~i~~~~~~~~------v~idtd~~~l~~~~~~~~~~~~~~~~~~~~~~gag~n~~~G~~~~~~~~~e~ 74 (328)
T cd00286 1 EIVTIQLGQAGNQIGAKFWEQL------VLVDTEPGVIDETLSGPYRLLFCIGQLITHGGGAGNNWAFGHETAGEEYQEE 74 (328)
T ss_pred CeEEEecCccHhHHHHHHHHhh------heecCCHHHHHHHhCcccccccCccceeecCCCCCCCcceeeccccHHHHHH
Confidence 4899999999999999999874 9999999999877543 3355777788999999999998744 456
Q ss_pred HHHHHHHHhcCCC---EEEEeccCCCCccCChHHHHHHHHHHhC--CceEEEEecCCCCch-hhhHHHHHHHHHHHHhhC
Q 014946 132 SKEVIANALKGSD---LVFITAGMGGGTGSGAAPVVAQIAKEAG--YLTVGVVTYPFSFEG-RKRSSQALEAIERLQKNV 205 (415)
Q Consensus 132 ~~e~I~~~le~~D---~~~I~agLGGGTGSG~apvia~~ake~g--~~tvavvtlP~~~Eg-~~r~~nA~~~l~~L~e~~ 205 (415)
..|+||+.+|+|| +|+|+||||||||||++|++++.+|+.+ +.+++++++|+.+|+ .+++|||.+++++|.+++
T Consensus 75 i~~~ir~~~E~cD~~~gf~i~~slgGGTGsG~~~~i~e~l~d~y~~~~~~~~~v~P~~~~~~~~~~yNa~l~l~~L~e~~ 154 (328)
T cd00286 75 ILDIIRKEAEECDSLQGFFITHSLGGGTGSGLGPVLAERLKDEYPKRLKITFSILPGPDEGVIVRPYNSILTLHTLTEHS 154 (328)
T ss_pred HHHHHHHHHHhCCCccceEEEeecCCCccccHHHHHHHHHHHHcCccceeEEEecCCCCCcchhhhhHHHHHHHHHHhcC
Confidence 6777888888887 7999999999999999999999998854 478999999999998 899999999999999999
Q ss_pred CEEEEEeCchhhhhccccCCh-HHHHhhhhhhhhccccccccccccCceeeechhhhhhhccC-CCeeEEEeeecCCcc-
Q 014946 206 DTLIVIPNDRLLDITDEQTAL-QDAFLLADDVLRQGVQGISDIITIPGLVNVDFADVKAVMKD-SGTAMLGVGVSSSKN- 282 (415)
Q Consensus 206 D~viv~dNd~L~~~~~~~~~i-~~af~~~N~~i~~~i~~It~~i~~~G~invD~~di~t~L~~-~g~~~ig~G~a~g~~- 282 (415)
|.++++||++|++++.+.+.+ .++|..+|++|++.+.+++..+|++|.+|+|+.++.++|.+ ++.+|+.+|+++...
T Consensus 155 d~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r~~g~~n~d~~~~~~~l~p~p~~~~~~~~~~p~~~~ 234 (328)
T cd00286 155 DCLVVIDNEALFDICPRPLHIDKPTFDHINELLATALSSLTTPLRFDGSLNVDLRELSENLVPFPRLHFLMVGYAPLDSE 234 (328)
T ss_pred CeEEEecchhHHHHhHHhcCCCCCCHHHHHHHHHhhccccccccccCccccchHHHHhhhcCCCCCceeeccccCccccc
Confidence 999999999999998654433 45999999999999999999999999999999999999998 578999999988642
Q ss_pred --------hHHHHHHHHhcccccc--cCccccccceEEeecCCCCCHHHHHHHHHHHHhhcC----CCCcEEEEeeecCC
Q 014946 283 --------RAEEAAEQATLAPLIG--SSIQSATGVVYNITGGKDITLQEVNRVSQVVTSLAD----PSANIIFGAVVDDR 348 (415)
Q Consensus 283 --------ra~~A~~~Al~spll~--~~i~~a~g~Lv~I~gg~disl~ev~~i~~~i~~~~~----~~a~Ii~G~~~d~~ 348 (415)
+..+++++++.+++.. .+....+.+.+.+..+++++..++.+....+++... .+..+++|.+..++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rG~~~~~~v~~~~~~l~~~~~~~~w~~~~~~~~~~~~~~ 314 (328)
T cd00286 235 GSATPTTLRVAELVRQALRSKNQMVVCDPTHGGYIAALLLVRGPVSPSEVREGIARVAPRTSHLSWSPPGIKVGVSPTPP 314 (328)
T ss_pred cccccccCCHHHHHHHHhCCCCeeeccCCCccchHHHHHHHhCCCChHHHHHHHHHHHHhCCcCCcCCCCEeEeecCCCC
Confidence 5678888888877543 233333444333332336789999999999988754 36789999998887
Q ss_pred C-CCeEEEEEEEe
Q 014946 349 Y-NGEIHVTIIAT 360 (415)
Q Consensus 349 l-~~~i~VtvIat 360 (415)
. +.+..+++|++
T Consensus 315 ~~~~~~~~~~l~N 327 (328)
T cd00286 315 ASEHKVSALLLSN 327 (328)
T ss_pred CCCcCeEEEEecc
Confidence 7 77899999886
No 9
>smart00864 Tubulin Tubulin/FtsZ family, GTPase domain. This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.
Probab=100.00 E-value=8.5e-39 Score=297.30 Aligned_cols=191 Identities=54% Similarity=0.765 Sum_probs=181.5
Q ss_pred eEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHhc-CCCCCCeeccccccccCCCCCCchhhHHHHHHHHHHHHH
Q 014946 60 KIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQ-SAAENPLQIGDLLTRGLGTGGNPLLGEQAAEESKEVIAN 138 (415)
Q Consensus 60 ~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~~-~~~~~ki~ig~~~t~G~GaG~n~~~G~~~aee~~e~I~~ 138 (415)
||+++|+|++|+|+|+.+.+.+ .++.+++|||...|+. ....+|+.+|...++|+|+|+||+.|+++++++.|+|++
T Consensus 1 ~i~~~g~g~~g~r~v~~d~e~~--~i~~i~~~t~~~~l~~~~~~~~k~~~Gn~~~~G~~~~~~~~~g~~~~~~~~~~ir~ 78 (192)
T smart00864 1 KIKVFGVGGYGPNAVLVDLEPG--VVDEVRANTDAQALNPESLASGKIGAGNNWTRGLGAGADPEVGREAAEESLDEIRE 78 (192)
T ss_pred CeEEEEeCCchhhHHhhhcccC--CceEEEECCHHHHhCCcccccchhcccccccccCCCCCChHHHHHHHHHHHHHHHH
Confidence 6899999999999999998876 4788999999999987 567889999999999999999999999999999999999
Q ss_pred HhcCCCEEEEeccCCCCccCChHHHHHHHHHHhCCceEEEEecCCCCchhhhHHHHHHHHHHHHhhCCEEEEEeCchhhh
Q 014946 139 ALKGSDLVFITAGMGGGTGSGAAPVVAQIAKEAGYLTVGVVTYPFSFEGRKRSSQALEAIERLQKNVDTLIVIPNDRLLD 218 (415)
Q Consensus 139 ~le~~D~~~I~agLGGGTGSG~apvia~~ake~g~~tvavvtlP~~~Eg~~r~~nA~~~l~~L~e~~D~viv~dNd~L~~ 218 (415)
++|+||+|||+||||||||||++|+|++++++|++.+++++++||.+|+..++|||.++|++|.+++|.+++||||+|++
T Consensus 79 ~le~~d~~~i~~slgGGTGsG~~~~i~~~~~~~~~~~~~~~v~P~~~e~~~~~~Na~~~l~~l~~~~d~~i~~dN~~l~~ 158 (192)
T smart00864 79 ELEGADGVFITAGMGGGTGTGAAPVIAEIAKEYGILTVAVVTKPFVFEGVVRPYNAELGLEELREHVDSLIVIDNDALLD 158 (192)
T ss_pred HhcCCCEEEEeccCCCCccccHHHHHHHHHHHcCCcEEEEEEEeEeecchhHHHHHHHHHHHHHHhCCEEEEEEhHHHHH
Confidence 99999999999999999999999999999999998889999999999999999999999999999999999999999999
Q ss_pred hccccCChHHHHhhhhhhhhccccccccccccCc
Q 014946 219 ITDEQTALQDAFLLADDVLRQGVQGISDIITIPG 252 (415)
Q Consensus 219 ~~~~~~~i~~af~~~N~~i~~~i~~It~~i~~~G 252 (415)
.+.+++++.++|+.+|+++++.+++++.++|+||
T Consensus 159 ~~~~~~~~~~~~~~~N~~i~~~i~~i~~~~rf~g 192 (192)
T smart00864 159 ICGRNLPIRPAFKDANDLLAQAVSGITDLIRFPG 192 (192)
T ss_pred HHhccCCchHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 9987778889999999999999999999999986
No 10
>COG5023 Tubulin [Cytoskeleton]
Probab=100.00 E-value=1.2e-37 Score=305.22 Aligned_cols=296 Identities=18% Similarity=0.255 Sum_probs=237.2
Q ss_pred EEEEeeCcchHHHHHHHHH-----cCCC--c--------------------------eEEEEEECCHHHHhcCCC-----
Q 014946 61 IKVVGVGGGGNNAVNRMIG-----SGLQ--G--------------------------VDFYAINTDSQALLQSAA----- 102 (415)
Q Consensus 61 i~vIGvGgaG~niv~~l~~-----~~~~--~--------------------------v~~iainTD~~~L~~~~~----- 102 (415)
|.-+=+||||+-|=+.+++ +|+. + =+.|.||..+..+++++.
T Consensus 4 IItlq~GQcGnQiG~~fWe~~c~EHGI~~~G~~~~~~~~~~er~~vfF~e~~~~k~vPRaI~vDLEP~vid~v~~g~y~~ 83 (443)
T COG5023 4 IITLQVGQCGNQIGNAFWETLCLEHGIGPDGTLLDSSDEGDERFDVFFYEASDGKFVPRAILVDLEPGVIDQVRNGPYGS 83 (443)
T ss_pred eEEEecccchhHHHHHHHHHHHHhhCcCCCCCCCCCcccccccccceeeecCCCccccceEEEecCcchHhhhccCcccc
Confidence 6667899999999988873 3431 0 123666666666665542
Q ss_pred ---CCCeeccccccccCCCCCCchhh-----HHHHHHHHHHHHHHhcCCC---EEEEeccCCCCccCChHHHHH-HHHHH
Q 014946 103 ---ENPLQIGDLLTRGLGTGGNPLLG-----EQAAEESKEVIANALKGSD---LVFITAGMGGGTGSGAAPVVA-QIAKE 170 (415)
Q Consensus 103 ---~~ki~ig~~~t~G~GaG~n~~~G-----~~~aee~~e~I~~~le~~D---~~~I~agLGGGTGSG~apvia-~~ake 170 (415)
+..+.+|+ .|||+||+.| ++..+..+|.||+..++|| +|+|+|++|||||||++.+|. ++..|
T Consensus 84 lf~Pen~i~gk-----egAgNnwA~GhYtvG~e~~ddvmd~IrreAd~cD~LqGF~l~HS~gGGTGSG~GslLLerl~~e 158 (443)
T COG5023 84 LFHPENIIFGK-----EGAGNNWARGHYTVGKEIIDDVMDMIRREADGCDGLQGFLLLHSLGGGTGSGLGSLLLERLREE 158 (443)
T ss_pred ccChhheeecc-----ccccccccccccchhHHHHHHHHHHHHHHhhcCccccceeeeeeccCcCcccHHHHHHHHHHHh
Confidence 22344443 6899999875 6889999999999999999 699999999999999999966 45566
Q ss_pred hCC---ceEEEEecCCCCchhhhHHHHHHHHHHHHhhCCEEEEEeCchhhhhccccCChH-HHHhhhhhhhhcccccccc
Q 014946 171 AGY---LTVGVVTYPFSFEGRKRSSQALEAIERLQKNVDTLIVIPNDRLLDITDEQTALQ-DAFLLADDVLRQGVQGISD 246 (415)
Q Consensus 171 ~g~---~tvavvtlP~~~Eg~~r~~nA~~~l~~L~e~~D~viv~dNd~L~~~~~~~~~i~-~af~~~N~~i~~~i~~It~ 246 (415)
|++ .+|+|+|.|..++.+++|||+.+++++|.+++|+++++||++|+++|..++.++ +.|.++|++|++.++++|.
T Consensus 159 ypkK~~~tfSV~P~p~~Sd~VVePYNsvLt~h~l~ensD~tf~~DNeal~di~~~~L~i~~P~y~~lN~LIs~VmSsvTt 238 (443)
T COG5023 159 YPKKIKLTFSVFPAPKVSDVVVEPYNSVLTLHRLLENSDCTFVVDNEALYDICRRNLRIQNPSYDDLNQLISTVMSSVTT 238 (443)
T ss_pred cchhheeEEEeccCCccCcceecccHHHHHHHHHHhcCCceEEechHHHHHHHHHhcCCCCCChHHHHHHHHHHHHhhhh
Confidence 773 699999999999999999999999999999999999999999999998888875 5899999999999999999
Q ss_pred ccccCceeeechhhhhhhccC-CCeeEEEeeecCCcchHHHHHHH----Hhcccccc-------cCccccccceEEeecC
Q 014946 247 IITIPGLVNVDFADVKAVMKD-SGTAMLGVGVSSSKNRAEEAAEQ----ATLAPLIG-------SSIQSATGVVYNITGG 314 (415)
Q Consensus 247 ~i~~~G~invD~~di~t~L~~-~g~~~ig~G~a~g~~ra~~A~~~----Al~spll~-------~~i~~a~g~Lv~I~gg 314 (415)
++||||++|+|+.++.++|.| +.+||+.++++|.......+.++ .+...+|+ ++....+++-+.....
T Consensus 239 slRfpG~ln~dl~~~~~nLVP~PrlHF~l~sytP~~s~~~~~~~~~sv~evt~~~f~p~N~mv~~dpr~g~y~~~~~l~r 318 (443)
T COG5023 239 SLRFPGYLNVDLRSIQTNLVPYPRLHFPLVSYTPFTSDGSAAHEKNSVSEVTNQLFDPKNQMVSCDPRKGRYMAVCLLFR 318 (443)
T ss_pred eeecCccccchHHHHHhcCCCCCcccccccccCcccchhhHHHhcccHHHHHHHHhCcccceeeecCCCCeeeehhHHHh
Confidence 999999999999999999999 48999999999986654444332 12233333 4666667766544444
Q ss_pred CCCCHHHHHHHHHHHHhhcC------CCCcEEEEeeecCC---CCCeEEEEEEEeC
Q 014946 315 KDITLQEVNRVSQVVTSLAD------PSANIIFGAVVDDR---YNGEIHVTIIATG 361 (415)
Q Consensus 315 ~disl~ev~~i~~~i~~~~~------~~a~Ii~G~~~d~~---l~~~i~VtvIatG 361 (415)
+++.++|+++++..++++.. -+.+++.|+|..++ -+.++.++.|+.-
T Consensus 319 G~v~~~dV~~a~~~v~~k~~~~Fv~W~P~~~~vai~~~~P~~~~~~~~s~~~lsNt 374 (443)
T COG5023 319 GDVDPRDVSRAVTRVQSKRTIQFVEWCPTGFKVAICKRPPSEPAEVDVSGCMLSNT 374 (443)
T ss_pred cCCCHHHHHHHHHHHHhcCcccccccCCcceeeeeeccCCcccccceeeeEeecCc
Confidence 58999999999999998733 26889999996666 4567888888753
No 11
>cd06059 Tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-termi
Probab=100.00 E-value=3.8e-36 Score=306.90 Aligned_cols=296 Identities=15% Similarity=0.188 Sum_probs=235.1
Q ss_pred EEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHhcCCCCCCe---eccccccccCCCCCCchhhH-----HHHHHH
Q 014946 61 IKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSAAENPL---QIGDLLTRGLGTGGNPLLGE-----QAAEES 132 (415)
Q Consensus 61 i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~~~~~ki---~ig~~~t~G~GaG~n~~~G~-----~~aee~ 132 (415)
|.+|+|||||++|.+.+++.- ++||+|++.++.+...... .....+++..|+|+||+.|+ +++|+.
T Consensus 2 ii~i~vGq~G~qig~~~w~~~------i~iD~e~~~i~~i~~~~~~~~~~~~~~~~~~~g~gnn~a~G~~~~g~~~~e~~ 75 (382)
T cd06059 2 IISIQIGQCGNQIGNKFWELL------ILVDLDPRVINEILQGQLSKLFDPNQLVNGKEGSGNNWARGYYTIGPELIDEI 75 (382)
T ss_pred eEEEecCCcHHHHHHHHHHHH------HcccCCcchhhhhhcccccccCCcccEEeccccccccccccccccCHHHHHHH
Confidence 789999999999999998763 9999999999877554322 22334566789999997764 789999
Q ss_pred HHHHHHHhcCCC---EEEEeccCCCCccCChHHHHHHHHHH-hC-CceEEEEecCCCCch--hhhHHHHHHHHHHHHhhC
Q 014946 133 KEVIANALKGSD---LVFITAGMGGGTGSGAAPVVAQIAKE-AG-YLTVGVVTYPFSFEG--RKRSSQALEAIERLQKNV 205 (415)
Q Consensus 133 ~e~I~~~le~~D---~~~I~agLGGGTGSG~apvia~~ake-~g-~~tvavvtlP~~~Eg--~~r~~nA~~~l~~L~e~~ 205 (415)
.|+||+.+|+|| +|+|+||||||||||++++|++.++| |+ ..++++++.|+..++ .+++||+.+++++|.+++
T Consensus 76 ~d~ir~~~E~cD~l~gf~i~~sl~GGTGSG~gs~l~e~l~d~y~~~~i~~~~v~P~~~~~~~~v~~yN~~lsl~~L~e~s 155 (382)
T cd06059 76 LDRIRKQVEKCDSLQGFQITHSLGGGTGSGLGSLLLELLSDEYPKILINTFSIFPSPQGSSNVVEPYNSILSLNHLLENS 155 (382)
T ss_pred HHHHHHHHHhCCCcCceEEEEecCCCcchhHHHHHHHHHHHhcCccceEeEEEeccCccCCccccchHHHHhHHHHHhcC
Confidence 999999999999 57999999999999999999999888 44 457888888988776 789999999999999999
Q ss_pred CEEEEEeCchhhhhccccCCh-HHHHhhhhhhhhccccccccccccCceeeechhhhhhhccC-CCeeEEEeeecCCcch
Q 014946 206 DTLIVIPNDRLLDITDEQTAL-QDAFLLADDVLRQGVQGISDIITIPGLVNVDFADVKAVMKD-SGTAMLGVGVSSSKNR 283 (415)
Q Consensus 206 D~viv~dNd~L~~~~~~~~~i-~~af~~~N~~i~~~i~~It~~i~~~G~invD~~di~t~L~~-~g~~~ig~G~a~g~~r 283 (415)
|.++++||++|.+++.+.+.+ .++|..+|++|++.+.+++..+|++|.+|+|+.|+.++|.| +.++|+.++++|....
T Consensus 156 d~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~iia~~l~~it~~~r~~g~~n~d~~~i~~~LvP~p~~~fl~~s~~P~~~~ 235 (382)
T cd06059 156 DSVILFDNEALYNILTRQLDIDEPSFDDLNNIIAQIISSITASLRFPGYLNFDLRKLATNLVPFPRLHFLTPSFAPLISY 235 (382)
T ss_pred CeeEEeehHHHHHHHHHhcCCCCCChHHHHHHHHHhhcccccccccCCCcCCCHHHHhhhcCCCCCceeccccccccccc
Confidence 999999999999998765444 46999999999999999999999999999999999999999 5789999999987432
Q ss_pred H---------HHHHHHHhc--ccccccCccccccceEEeecCCCCCHHHHHHHHHHHHhhcC----CCCcEEEEeeecCC
Q 014946 284 A---------EEAAEQATL--APLIGSSIQSATGVVYNITGGKDITLQEVNRVSQVVTSLAD----PSANIIFGAVVDDR 348 (415)
Q Consensus 284 a---------~~A~~~Al~--spll~~~i~~a~g~Lv~I~gg~disl~ev~~i~~~i~~~~~----~~a~Ii~G~~~d~~ 348 (415)
. .+-.++.+. +.+.+.+....+.+.+.+..++++...++.+.+..++.... .+..+.++.+..++
T Consensus 236 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~la~~~~~RG~~~~~~v~~~~~~~~~~~~~~~w~p~~~~~~~~~~~~ 315 (382)
T cd06059 236 DSQTTEKLNLLQIINELFNNDNSFFSCDPTKGRYLAAALIFRGDVFQSEIQEAINKLKNKLNIQSWIPDGFKVSNCKKPP 315 (382)
T ss_pred hhcccccCCHHHHHHHHhhcccceeecCCCcchHHHHHHHHhCCCCHHHHHHHHHHHHHhcccccCCCCcEEEEecCCCC
Confidence 1 111222221 11222333444555444444457889999999888886642 24678888886666
Q ss_pred C-CCeEEEEEEEeCC
Q 014946 349 Y-NGEIHVTIIATGF 362 (415)
Q Consensus 349 l-~~~i~VtvIatG~ 362 (415)
. +.+..+++++..-
T Consensus 316 ~~~~~~s~~~l~Nst 330 (382)
T cd06059 316 RAELGKSALFLSNST 330 (382)
T ss_pred CcCcceeEEEecCch
Confidence 6 6677888888754
No 12
>cd02190 epsilon_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The epsilon-tubulins which are widespread but not ubiquitous among eukaryotes play a role in basal body/centriole morphogenesis.
Probab=100.00 E-value=3.5e-34 Score=291.79 Aligned_cols=292 Identities=18% Similarity=0.198 Sum_probs=223.9
Q ss_pred eEEEEeeCcchHHHHHHHHHcCC---CceEEEEEECCHHHHhcCCCC-CCeeccc--cccccCCCCCCchhhH-----HH
Q 014946 60 KIKVVGVGGGGNNAVNRMIGSGL---QGVDFYAINTDSQALLQSAAE-NPLQIGD--LLTRGLGTGGNPLLGE-----QA 128 (415)
Q Consensus 60 ~i~vIGvGgaG~niv~~l~~~~~---~~v~~iainTD~~~L~~~~~~-~ki~ig~--~~t~G~GaG~n~~~G~-----~~ 128 (415)
.|..|.+||||++|.+.+++.=. .-.++++||+|++.++++... .+-++-+ .+....|+|+||+.|+ +.
T Consensus 2 Eii~i~~GqcGnqig~~~w~~~~~eh~~pR~v~iD~e~~~i~~i~~~~~~~~~~~~~~~~~~~gaGnn~a~G~~~~g~~~ 81 (379)
T cd02190 2 EIIVVQVGQCGNQIGCRFWDLALREHLKARAVLIDMEEGVVNEILKGPLRDLFDETQLVTDVSGAGNNWAVGYHQYGHQY 81 (379)
T ss_pred ceEEEecCcHHHHHHHHHHHHHHHhhcCCcceeccCChhHHHHHhcCccccccCcccccccCCCCCCCccceeeccchhH
Confidence 37899999999999999974310 126799999999988876431 1111211 1223479999998754 67
Q ss_pred HHHHHHHHHHHhcCCC---EEEEeccCCCCccCChHHHHHHHHHH-hCC-ceEEEEecCCCCch-hhhHHHHHHHHHHHH
Q 014946 129 AEESKEVIANALKGSD---LVFITAGMGGGTGSGAAPVVAQIAKE-AGY-LTVGVVTYPFSFEG-RKRSSQALEAIERLQ 202 (415)
Q Consensus 129 aee~~e~I~~~le~~D---~~~I~agLGGGTGSG~apvia~~ake-~g~-~tvavvtlP~~~Eg-~~r~~nA~~~l~~L~ 202 (415)
.++..|+||+++|.|| +|+|+||||||||||+++.|++.+++ |+. ..+++++.|+..++ .+++||+.++|++|.
T Consensus 82 ~~~~~d~ir~~~E~cd~l~gf~i~~sl~GGTGSG~gs~l~e~l~~~y~~~~~~~~~v~P~~~~~~~v~~yN~~lsl~~l~ 161 (379)
T cd02190 82 IDSILEKIRKAAEKCDSLQSFFILHSLGGGTGSGLGTYVLELLADEFPEVYRFVTSVYPSADDDVITSPYNSVLALRELI 161 (379)
T ss_pred HHHHHHHHHHHHhhCcCcceEEEEeecCCCcchhHHHHHHHHHHHhcCccceEEEeecCCCCCCceecccHHHHHHHHHH
Confidence 8899999999999998 58999999999999999999998887 543 35555566665444 679999999999999
Q ss_pred hhCCEEEEEeCchhhhhccccCChHHHHhhhhhhhhccccccccccccCceeeechhhhhhhccC-CCeeEEEeeecCCc
Q 014946 203 KNVDTLIVIPNDRLLDITDEQTALQDAFLLADDVLRQGVQGISDIITIPGLVNVDFADVKAVMKD-SGTAMLGVGVSSSK 281 (415)
Q Consensus 203 e~~D~viv~dNd~L~~~~~~~~~i~~af~~~N~~i~~~i~~It~~i~~~G~invD~~di~t~L~~-~g~~~ig~G~a~g~ 281 (415)
+++|.+++|||++|. +|+.+|++|++.+++++..+|+||.+|+|+.|+.++|.| +.++|+..+++|..
T Consensus 162 ~~~d~~i~~~N~~l~-----------~~~~~N~~ia~~i~~~t~~~rf~g~~n~d~~~i~~nLvP~P~l~fl~~s~~P~~ 230 (379)
T cd02190 162 EHADCVLPIENQALV-----------PFDAMNSIVANLLLNLTSSMRFEGSLNVDLNEITMNLVPFPRLHFLVSSLSPLY 230 (379)
T ss_pred HhCCeeEEeccHHHH-----------HHHHHHHHHHhhhcCccceeecccccccchhhhccccccCCCceeccccccccc
Confidence 999999999999999 799999999999999999999999999999999999999 58999999999864
Q ss_pred ch---------HHHHHHHHhc--ccccccCccccccceEEeecCCCCCHHHHHHHHHHHHhhcC----CCCcEEEEeeec
Q 014946 282 NR---------AEEAAEQATL--APLIGSSIQSATGVVYNITGGKDITLQEVNRVSQVVTSLAD----PSANIIFGAVVD 346 (415)
Q Consensus 282 ~r---------a~~A~~~Al~--spll~~~i~~a~g~Lv~I~gg~disl~ev~~i~~~i~~~~~----~~a~Ii~G~~~d 346 (415)
.. ..+.+++.++ +.+...+....+.+.+.+..+++++..|+.+.+..+++... .+..+..+.+..
T Consensus 231 ~~~~~~~~~~s~~~l~~~l~~~~~~m~~~~~~~~kyls~~~i~RG~~~~~ei~~~~~~l~~~~~fv~W~p~~~~~~~~~~ 310 (379)
T cd02190 231 PLADVNVPPRRLDQMFSDAFSRNHQLIRADPKHGLYLACALLVRGNVSVSDLRRNIERLKPKLKFVKWNQEGWKIGLCSV 310 (379)
T ss_pred chhhccccCCCHHHHHHHHHccccceeecCCCcchHHHHHHHHcCCCCHHHHHHHHHHHhccCcCcCcCCCcEEEeeccc
Confidence 32 1222333332 22333344455666554444458999999999888876532 145678888866
Q ss_pred CCCCCeEEEEEEEeCC
Q 014946 347 DRYNGEIHVTIIATGF 362 (415)
Q Consensus 347 ~~l~~~i~VtvIatG~ 362 (415)
++.+.+..+++++..-
T Consensus 311 ~~~~~~~s~~~lsNsT 326 (379)
T cd02190 311 PPVGHSYSLLCLANNT 326 (379)
T ss_pred CCCCcceeEEEecCcc
Confidence 6677778888888754
No 13
>PTZ00387 epsilon tubulin; Provisional
Probab=100.00 E-value=5.3e-34 Score=296.47 Aligned_cols=303 Identities=15% Similarity=0.213 Sum_probs=233.2
Q ss_pred eEEEEeeCcchHHHHHHHH-----HcCC---C--------------------------ceEEEEEECCHHHHhcCCCC--
Q 014946 60 KIKVVGVGGGGNNAVNRMI-----GSGL---Q--------------------------GVDFYAINTDSQALLQSAAE-- 103 (415)
Q Consensus 60 ~i~vIGvGgaG~niv~~l~-----~~~~---~--------------------------~v~~iainTD~~~L~~~~~~-- 103 (415)
.|..|-|||||+.|-+.++ +++. . -.+++.||+|+..++.+...
T Consensus 3 EiI~iqvGQCGnQIG~~fW~~l~~Eh~~i~~~g~~~~~~~~fF~~~~~~~~~~~~~~~~pRav~vD~Ep~vi~~i~~~~~ 82 (465)
T PTZ00387 3 EIVTVQVGQCGNQLGHRFWDVALKEHKKINANPQYDDARDSFFENVSENVNRPGKENLKARAVLVDMEEGVLNQILKSPL 82 (465)
T ss_pred cEEEEEcCchHHHHHHHHHHHHHHHhCccCCCCcccccccceecccccccccCCCccccCcccccCCCccHHHHhhcCCc
Confidence 3889999999999999886 3341 0 03568888888887765321
Q ss_pred CCeecccc-ccccCCCCCCchhh-----HHHHHHHHHHHHHHhcCCC---EEEEeccCCCCccCChHHHHHHHHHH-hC-
Q 014946 104 NPLQIGDL-LTRGLGTGGNPLLG-----EQAAEESKEVIANALKGSD---LVFITAGMGGGTGSGAAPVVAQIAKE-AG- 172 (415)
Q Consensus 104 ~ki~ig~~-~t~G~GaG~n~~~G-----~~~aee~~e~I~~~le~~D---~~~I~agLGGGTGSG~apvia~~ake-~g- 172 (415)
.++.=.+. +++-.|+|+||+.| .++.|+..|.||+++|.|| +|+|+||||||||||+++.|++.+++ |+
T Consensus 83 ~~~f~~~~~i~~~~GaGNnwa~G~~~~g~~~~d~~~d~Ir~~~E~cD~l~gf~i~~slgGGTGSGlgs~lle~l~d~y~~ 162 (465)
T PTZ00387 83 GDLFDENFFVSDVSGAGNNWAVGHMEYGDKYIDSISESVRRQVEQCDSLQSFFLMHSLGGGTGSGLGTRILGMLEDEFPH 162 (465)
T ss_pred ccccCcccccccCCCCCCCcCCCcccccHHHHHHHHHHHHHHHHhccCcceEEEEeecCCCcchhHHHHHHHHHHHhccc
Confidence 11111122 23448999999987 7889999999999999998 57999999999999999999998887 44
Q ss_pred CceEEEEecCCCCch-hhhHHHHHHHHHHHHhhCCEEEEEeCchhhhhccccCChH------------------------
Q 014946 173 YLTVGVVTYPFSFEG-RKRSSQALEAIERLQKNVDTLIVIPNDRLLDITDEQTALQ------------------------ 227 (415)
Q Consensus 173 ~~tvavvtlP~~~Eg-~~r~~nA~~~l~~L~e~~D~viv~dNd~L~~~~~~~~~i~------------------------ 227 (415)
..++++++.|+..++ .+++||+.++|++|.+++|++++|||++|++++...+.+.
T Consensus 163 ~~~~~~~V~P~~~~~~vv~pYN~~lsl~~l~e~~d~~i~~dN~aL~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (465)
T PTZ00387 163 VFRFCPVVFPSAVDDVITSPYNSFFALRELIEHADCVLPLDNDALANIADSALSRKKKKLAKGNIKRGPQPHKYSVAKPT 242 (465)
T ss_pred CceeeeEecCCCCCcceeccchhHHHHHHHHhhCCeEEEeehHHHHHHHHhhcCcccccccccccccccccccccccccc
Confidence 456777788875444 6799999999999999999999999999999996554443
Q ss_pred ----HHHhhhhhhhhccccccccccccCceeeechhhhhhhccC-CCeeEEEeeecCCcch---------HHHHHHHHhc
Q 014946 228 ----DAFLLADDVLRQGVQGISDIITIPGLVNVDFADVKAVMKD-SGTAMLGVGVSSSKNR---------AEEAAEQATL 293 (415)
Q Consensus 228 ----~af~~~N~~i~~~i~~It~~i~~~G~invD~~di~t~L~~-~g~~~ig~G~a~g~~r---------a~~A~~~Al~ 293 (415)
+.|+.+|++|++.++++|.++|+||.+|+|+.|+.++|.| +.++|+.++++|.... ..+.+++.++
T Consensus 243 ~~~~~~~~~~N~iIa~~l~~~t~~~Rf~g~~n~dl~~i~~nLvP~P~lhFl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~ 322 (465)
T PTZ00387 243 ETKKLPYDKMNNIVAQLLSNLTSSMRFEGSLNVDINEITTNLVPYPRLHFLTSSIAPLVSLKDVAVGPRRLDQMFKDCLD 322 (465)
T ss_pred ccccccHHHHHHHHHhhhccccceeecCCccCCCHHHHHhhcCCCCCceeeccccCcccchhhcccccCCHHHHHHHHhc
Confidence 6899999999999999999999999999999999999999 5899999999987432 1222233332
Q ss_pred c--cccccCccccccceEEeecCCCCCHHHHHHHHHHHHhhcC----CCCcEEEEeeecCCCCCeEEEEEEEeCC
Q 014946 294 A--PLIGSSIQSATGVVYNITGGKDITLQEVNRVSQVVTSLAD----PSANIIFGAVVDDRYNGEIHVTIIATGF 362 (415)
Q Consensus 294 s--pll~~~i~~a~g~Lv~I~gg~disl~ev~~i~~~i~~~~~----~~a~Ii~G~~~d~~l~~~i~VtvIatG~ 362 (415)
. .+...+....+.+.+.+..++++...|+.+.+..+++... .+..+..+.|..++.+.+..+++|+..-
T Consensus 323 ~~~~m~~~~~~~~k~la~~~~~RG~~~~~~v~~~~~~lk~~~~f~~W~p~~~~~~~~~~~~~~~~~s~~~lsNst 397 (465)
T PTZ00387 323 PDHQMVAATPEAGKYLATALIVRGPQNVSDVTRNILRLKEQLNMIYWNEDGFKTGLCNVSPLGQPYSLLCLANNC 397 (465)
T ss_pred ccCeeeecCCCcchHHHHHHHHcCCCChHHHHHHHHHHhccccccccCCCceEEEeeccCCCCCceeEEEecCCh
Confidence 1 2333344455666554444557889999999998886522 2457888998777777788889888743
No 14
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.; GO: 0051258 protein polymerization, 0043234 protein complex; PDB: 3E22_B 1SA1_D 3DU7_B 2P4N_B 3DCO_B 1Z2B_D 1SA0_B 2XRP_C 1TVK_B 2BTQ_B ....
Probab=100.00 E-value=3.2e-34 Score=271.23 Aligned_cols=172 Identities=34% Similarity=0.442 Sum_probs=153.7
Q ss_pred eEEEEeeCcchHHHHHHHHH-----------------------------cCCCceEEEEEECCHHHHhcCCCCC--Ceec
Q 014946 60 KIKVVGVGGGGNNAVNRMIG-----------------------------SGLQGVDFYAINTDSQALLQSAAEN--PLQI 108 (415)
Q Consensus 60 ~i~vIGvGgaG~niv~~l~~-----------------------------~~~~~v~~iainTD~~~L~~~~~~~--ki~i 108 (415)
+|.+|||||||++|++.|++ .+....++++||||++.|+++.... +++.
T Consensus 1 eii~i~iGq~G~qIg~~~~~~l~~e~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~r~i~iDtd~~~l~~i~~~~~~~l~~ 80 (216)
T PF00091_consen 1 EIIVIGIGQCGNQIGDAFWELLCREHGINPDSKSQYNRENINSFFSESSSGKYVPRAIAIDTDPKVLDEIRASPKRSLFD 80 (216)
T ss_dssp EEEEEEEHHHHHHHHHHHHHHHHHHCTBTTTSSSSTTSSTGCCTEEESTTTBESEEEEEEESSHHHHHHHHTSEETTESC
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHHhhccccccccccccccccceeeeccccccccccccccccccccccccccccccccc
Confidence 58999999999999999998 2222379999999999999876554 4888
Q ss_pred cccccccC-CCCCCchhhHH-----HHHHHHHHHHHHhcC---CCEEEEeccCCCCccCChHHHHHHHHHHh--CCceEE
Q 014946 109 GDLLTRGL-GTGGNPLLGEQ-----AAEESKEVIANALKG---SDLVFITAGMGGGTGSGAAPVVAQIAKEA--GYLTVG 177 (415)
Q Consensus 109 g~~~t~G~-GaG~n~~~G~~-----~aee~~e~I~~~le~---~D~~~I~agLGGGTGSG~apvia~~ake~--g~~tva 177 (415)
+...+.|. |+|+||++|+. ++++.+++|++++|. +|+|||+||||||||||++|+|++.+++. ++++++
T Consensus 81 ~~~~~~~~~g~g~n~~~G~~~~~~~~~~~~~~~ir~~~e~~d~~~~~~i~~slgGGTGSG~~~~l~~~l~~~y~~~~~~~ 160 (216)
T PF00091_consen 81 PNNLISGQEGSGNNWAVGYYTFGEEALEEILEQIRKEIEKCDSLDGFFIVHSLGGGTGSGLGPVLAEMLREEYPKKPIIS 160 (216)
T ss_dssp GGGEEETSSTSTTSHHHHHHHHHHHHHHHHHHHHHHHHHTSTTESEEEEEEESSSSHHHHHHHHHHHHHHHTSTTSEEEE
T ss_pred ccccccccccccccccccccccccccccccccccchhhccccccccceecccccceeccccccccchhhhccccccceee
Confidence 88877775 99999999987 889999999999954 56999999999999999999999999997 678999
Q ss_pred EEecCCCCchhhhHHHHHHHHHHHHhhCCEEEEEeCchhhhhccccCChH-HHHh
Q 014946 178 VVTYPFSFEGRKRSSQALEAIERLQKNVDTLIVIPNDRLLDITDEQTALQ-DAFL 231 (415)
Q Consensus 178 vvtlP~~~Eg~~r~~nA~~~l~~L~e~~D~viv~dNd~L~~~~~~~~~i~-~af~ 231 (415)
++++|+.+|+.+++|||.++|++|.+++|++|+|||++|++.+.++++++ ++|.
T Consensus 161 ~~ilP~~~e~~~~~~Na~~~l~~l~~~~d~~i~~dN~~l~~~~~~~l~~~~~~f~ 215 (216)
T PF00091_consen 161 FSILPFSSEGVVEPYNALLSLSELQEYADSVILFDNDALYKICKNQLGIENPAFN 215 (216)
T ss_dssp EEEE-CGGGSHHHHHHHHHHHHHHHHTSSEEEEEEHHHHHHHHHHTSSHSSHHHH
T ss_pred ccccccccccccccceehhHHHHHHHhCCEEEEEcHHHHHHHHhccCCCCCCCcC
Confidence 99999988999999999999999999999999999999999998888887 7875
No 15
>cd02187 beta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-
Probab=100.00 E-value=2.3e-32 Score=282.41 Aligned_cols=303 Identities=17% Similarity=0.190 Sum_probs=226.9
Q ss_pred eEEEEeeCcchHHHHHHHHH-----cCC--------------Cc--------------eEEEEEECCHHHHhcCCCC--C
Q 014946 60 KIKVVGVGGGGNNAVNRMIG-----SGL--------------QG--------------VDFYAINTDSQALLQSAAE--N 104 (415)
Q Consensus 60 ~i~vIGvGgaG~niv~~l~~-----~~~--------------~~--------------v~~iainTD~~~L~~~~~~--~ 104 (415)
.|..|-+||||+.|-+.+++ +++ .. .++++||+|+..|+.+... .
T Consensus 2 eii~i~vGqcGnqiG~~~w~~l~~eh~~~~~g~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~~i~~i~~~~~~ 81 (425)
T cd02187 2 EIVHIQAGQCGNQIGAKFWEVISDEHGLDPTGTYKGDSDLQLERINVYFNEASGGKYVPRAILVDLEPGTMDSVRSGPFG 81 (425)
T ss_pred ceEEEeCCccHhHHHHHHHHHHHHHcCCCCCCCccCCccccccccceeEEecCCCceeeeeeeccCChhhhhhhhcCccc
Confidence 37889999999999888863 221 00 2679999999988876432 1
Q ss_pred Ceeccccc-cccCCCCCCchh-----hHHHHHHHHHHHHHHhcCCC---EEEEeccCCCCccCChHHHHHHHHHH-hCC-
Q 014946 105 PLQIGDLL-TRGLGTGGNPLL-----GEQAAEESKEVIANALKGSD---LVFITAGMGGGTGSGAAPVVAQIAKE-AGY- 173 (415)
Q Consensus 105 ki~ig~~~-t~G~GaG~n~~~-----G~~~aee~~e~I~~~le~~D---~~~I~agLGGGTGSG~apvia~~ake-~g~- 173 (415)
++.-+... .+-.|+|+||+. |+++.++..|.||+++|.|| +|+|+||||||||||+++.+.+.+++ |+.
T Consensus 82 ~l~~~~~~~~~~~gagnnwa~G~~~~G~~~~e~i~d~ir~~~E~cD~l~gf~~~~sl~GGTGSG~gs~l~e~l~d~y~~~ 161 (425)
T cd02187 82 QLFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDR 161 (425)
T ss_pred ceecCcceeeccCCCCCccCccchhhcHHHHHHHHHHHHHhhccCCCcceEEEEeecCCCccccHHHHHHHHHHHhcCCc
Confidence 22222222 223789999976 45889999999999999998 78999999999999999999887776 653
Q ss_pred ceEEEEecC--CCCchhhhHHHHHHHHHHHHhhCCEEEEEeCchhhhhccccCCh-HHHHhhhhhhhhcccccccccccc
Q 014946 174 LTVGVVTYP--FSFEGRKRSSQALEAIERLQKNVDTLIVIPNDRLLDITDEQTAL-QDAFLLADDVLRQGVQGISDIITI 250 (415)
Q Consensus 174 ~tvavvtlP--~~~Eg~~r~~nA~~~l~~L~e~~D~viv~dNd~L~~~~~~~~~i-~~af~~~N~~i~~~i~~It~~i~~ 250 (415)
.++++.+.| ...|..+++||+.++|+.|.+++|.+++|||++|++++...+.+ .+.|+.+|++|++.+++++..+||
T Consensus 162 ~~~~~~V~P~~~~~~~~v~~YN~~lsl~~l~~~~d~~i~~dN~al~~i~~~~~~~~~~~~~~~N~~ia~~is~~t~s~Rf 241 (425)
T cd02187 162 IMATFSVFPSPKVSDTVVEPYNATLSVHQLVENSDETFCIDNEALYDICFRTLKLTNPTYGDLNHLVSAVMSGITTCLRF 241 (425)
T ss_pred ceEEEEEecCCCcCcceeeehHHHHHHHHHHhcCCeEEEeecHHHHHHHHHhcCCCCCCHHHHHHHHhccccccceeeec
Confidence 344444455 44588999999999999999999999999999999999765554 358999999999999999999999
Q ss_pred CceeeechhhhhhhccC-CCeeEEEeeecCCcchH---------HHHHHHHhc--ccccccCccccccceEEeecCCCCC
Q 014946 251 PGLVNVDFADVKAVMKD-SGTAMLGVGVSSSKNRA---------EEAAEQATL--APLIGSSIQSATGVVYNITGGKDIT 318 (415)
Q Consensus 251 ~G~invD~~di~t~L~~-~g~~~ig~G~a~g~~ra---------~~A~~~Al~--spll~~~i~~a~g~Lv~I~gg~dis 318 (415)
||.+|.|+.++.++|.| +.++|+.++++|....- .+-+++.+. +.+...+....+.+.+.+..+++++
T Consensus 242 pg~~n~dl~~l~~nLvP~P~~~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~~~~~~~~la~~~~~RG~~~ 321 (425)
T cd02187 242 PGQLNSDLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTAAAIFRGRVS 321 (425)
T ss_pred CCccccCHHHHHHhcCCCCCceecccccCccccccccccccCCHHHHHHHHhCccCeeeccCCCcchHHHHHHHHcCCCC
Confidence 99999999999999999 58999999999874321 111222211 1111223334455544444445799
Q ss_pred HHHHHHHHHHHHhhcC------CCCcEEEEeeecCCCCCeEEEEEEEeCC
Q 014946 319 LQEVNRVSQVVTSLAD------PSANIIFGAVVDDRYNGEIHVTIIATGF 362 (415)
Q Consensus 319 l~ev~~i~~~i~~~~~------~~a~Ii~G~~~d~~l~~~i~VtvIatG~ 362 (415)
..|+.+.+..++++.. .+..+..+.+..++.+.+..+++++..-
T Consensus 322 ~~~~~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~~~~~~~s~~~l~N~t 371 (425)
T cd02187 322 MKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNST 371 (425)
T ss_pred HHHHHHHHHHHHHhCCCcCCCcCCCCEeeeecCCCCCCcceeEEEecCCc
Confidence 9999999998876521 1456788888666666678888888643
No 16
>cd02186 alpha_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino
Probab=100.00 E-value=4.1e-32 Score=281.09 Aligned_cols=302 Identities=13% Similarity=0.156 Sum_probs=228.8
Q ss_pred eEEEEeeCcchHHHHHHHHH-----cCC--------------C----c------------eEEEEEECCHHHHhcCCCC-
Q 014946 60 KIKVVGVGGGGNNAVNRMIG-----SGL--------------Q----G------------VDFYAINTDSQALLQSAAE- 103 (415)
Q Consensus 60 ~i~vIGvGgaG~niv~~l~~-----~~~--------------~----~------------v~~iainTD~~~L~~~~~~- 103 (415)
.|..|-+||||+.|-..+++ +++ . + .++++||+|++.++.+...
T Consensus 2 EiI~i~iGqcGnqiG~~~w~~l~~Eh~~~~~g~~~~~~~~~~~~~~~~~ff~e~~~~~~~pRav~iD~e~~~i~~i~~~~ 81 (434)
T cd02186 2 EVISIHIGQAGIQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGSGKHVPRAVFIDLEPTVIDEVRTGT 81 (434)
T ss_pred ceEEEeCCchHhHHHHHHHHHHHHHhCcCCCCCccCCccccccccccceEEEECCCCcCcccccccCCcHHHHHhhccCc
Confidence 37889999999999888862 222 0 0 2568999999998876432
Q ss_pred CCeecccc-c-cccCCCCCCchh-----hHHHHHHHHHHHHHHhcCCC---EEEEeccCCCCccCChHHHHHHHHHH-hC
Q 014946 104 NPLQIGDL-L-TRGLGTGGNPLL-----GEQAAEESKEVIANALKGSD---LVFITAGMGGGTGSGAAPVVAQIAKE-AG 172 (415)
Q Consensus 104 ~ki~ig~~-~-t~G~GaG~n~~~-----G~~~aee~~e~I~~~le~~D---~~~I~agLGGGTGSG~apvia~~ake-~g 172 (415)
.+-++.+. . .+-.|+|+||+. |.++.++..|+||+++|.|| +|+|+||||||||||+++.|++.+++ |+
T Consensus 82 ~~~l~~~~~~~~~~~g~gnnwa~Gy~~~G~~~~~~i~d~ir~~~E~cD~l~gf~i~~sl~GGTGSGlgs~l~e~l~d~y~ 161 (434)
T cd02186 82 YRQLFHPEQLISGKEDAANNFARGHYTIGKEIIDLVLDRIRKLADNCTGLQGFLIFHSFGGGTGSGFGSLLLERLSVDYG 161 (434)
T ss_pred cccccCccceeecCCCCCcccccccchhHHHHHHHHHHHHHHHHhcCCCcceeEEEeccCCCcchhHHHHHHHHHHHhcC
Confidence 22234332 2 233789999976 56789999999999999997 79999999999999999999987776 65
Q ss_pred -CceEEEEecCCC--CchhhhHHHHHHHHHHHHhhCCEEEEEeCchhhhhccccCChH-HHHhhhhhhhhcccccccccc
Q 014946 173 -YLTVGVVTYPFS--FEGRKRSSQALEAIERLQKNVDTLIVIPNDRLLDITDEQTALQ-DAFLLADDVLRQGVQGISDII 248 (415)
Q Consensus 173 -~~tvavvtlP~~--~Eg~~r~~nA~~~l~~L~e~~D~viv~dNd~L~~~~~~~~~i~-~af~~~N~~i~~~i~~It~~i 248 (415)
..++++++.|+. .|..+++||+.++|..|.+++|.+++|||++|++++.....+. +.|+.+|++|++.+.+++..+
T Consensus 162 ~~~~~~~~v~P~~~~~~~~v~~YN~~lsl~~l~e~~d~~~~~dN~al~~~~~~~~~~~~~~~~~lN~iIa~~l~~~t~~~ 241 (434)
T cd02186 162 KKSKLEFTVYPSPQVSTAVVEPYNSVLTTHSLLEHSDCSFMVDNEAIYDICRRNLDIERPTYTNLNRLIAQVVSSITASL 241 (434)
T ss_pred ccceeeEEEeCCCCCCCCeeeehHHHHhHHHHHhhCCeeeeeccHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhccccce
Confidence 346666666664 4778999999999999999999999999999999997666665 699999999999999999999
Q ss_pred ccCceeeechhhhhhhccC-CCeeEEEeeecCCcch---------HHHHHHHHhc--ccccccCccccccceEEeecCCC
Q 014946 249 TIPGLVNVDFADVKAVMKD-SGTAMLGVGVSSSKNR---------AEEAAEQATL--APLIGSSIQSATGVVYNITGGKD 316 (415)
Q Consensus 249 ~~~G~invD~~di~t~L~~-~g~~~ig~G~a~g~~r---------a~~A~~~Al~--spll~~~i~~a~g~Lv~I~gg~d 316 (415)
|++|.+|.|+.++.++|.| +.++|+.++++|.... ..+-+++.++ +.++..+....+.+.+.+..+++
T Consensus 242 rf~g~~~~~l~~l~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~~~m~~~~~~~~~~la~~~~~RG~ 321 (434)
T cd02186 242 RFDGALNVDLNEFQTNLVPYPRIHFPLVSYAPIISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGD 321 (434)
T ss_pred ecCCccCCCHHHHHhhccccccceeeccccCcccchhhccccCCCHHHHHHHHhCccceeeecCCcchhHHHHHHHHcCC
Confidence 9999999999999999999 5799999999987432 1222222222 12333344455665554444558
Q ss_pred CCHHHHHHHHHHHHhhcC------CCCcEEEEeeecCCC--------CCeEEEEEEEeC
Q 014946 317 ITLQEVNRVSQVVTSLAD------PSANIIFGAVVDDRY--------NGEIHVTIIATG 361 (415)
Q Consensus 317 isl~ev~~i~~~i~~~~~------~~a~Ii~G~~~d~~l--------~~~i~VtvIatG 361 (415)
++..|+.+.+..++++.. .+..+.++++..++. ..+..+++++..
T Consensus 322 ~~~~~v~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~Ns 380 (434)
T cd02186 322 VVPKDVNAAVATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNT 380 (434)
T ss_pred CCHHHHHHHHHHHHHhCCCcCcccCCCcEeeeecCCCCccCCCccccccceEEEEecCc
Confidence 999999999988865421 145677888755443 234678888764
No 17
>PLN00222 tubulin gamma chain; Provisional
Probab=100.00 E-value=7.2e-32 Score=280.16 Aligned_cols=300 Identities=18% Similarity=0.235 Sum_probs=225.8
Q ss_pred eEEEEeeCcchHHHHHHHHH-----cCCC-------------------------c---eEEEEEECCHHHHhcCCCC---
Q 014946 60 KIKVVGVGGGGNNAVNRMIG-----SGLQ-------------------------G---VDFYAINTDSQALLQSAAE--- 103 (415)
Q Consensus 60 ~i~vIGvGgaG~niv~~l~~-----~~~~-------------------------~---v~~iainTD~~~L~~~~~~--- 103 (415)
.|..|-+||||+.|-+.+++ +++. + .+++.||+|+..++++...
T Consensus 4 EiI~i~vGQcGnqiG~~~w~~l~~Eh~i~~~g~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~vi~~i~~~~~~ 83 (454)
T PLN00222 4 EIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGGDRKDVFFYQADDEHYIPRALLIDLEPRVINGIQNSEYR 83 (454)
T ss_pred cEEEEecCchHHHHHHHHHHHHHHHhCCCCCCCccCccccccccccceeEEcCCCcccceeeecCCCcchhhhhccCccc
Confidence 38999999999999998862 2320 0 2678899998888766331
Q ss_pred -----CCeeccccccccCCCCCCchhhH----HHHHHHHHHHHHHhcCCC---EEEEeccCCCCccCChHHHHHHHHHH-
Q 014946 104 -----NPLQIGDLLTRGLGTGGNPLLGE----QAAEESKEVIANALKGSD---LVFITAGMGGGTGSGAAPVVAQIAKE- 170 (415)
Q Consensus 104 -----~ki~ig~~~t~G~GaG~n~~~G~----~~aee~~e~I~~~le~~D---~~~I~agLGGGTGSG~apvia~~ake- 170 (415)
+.+..|. .|.|+|+||+.|+ +..++.+|.||+.+|.|| +|+++||||||||||+++.|++.+++
T Consensus 84 ~lf~~~~~~~~~---~~~gagnn~a~Gy~~g~~~~d~i~d~ir~~~E~cd~l~gf~i~~sl~GGTGSGlgs~lle~L~d~ 160 (454)
T PLN00222 84 NLYNHENIFVSD---HGGGAGNNWASGYHQGEQVEEDIMDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEALNDR 160 (454)
T ss_pred cccCccceeecc---cCCCcccchHHhHHHHHHHHHHHHHHHHHHHHhCCCccceEEeecCCCCccchHHHHHHHHHHhh
Confidence 1122322 2348999999986 455666777888888887 89999999999999999999988877
Q ss_pred hCC-ceEEEEecCCC---CchhhhHHHHHHHHHHHHhhCCEEEEEeCchhhhhccccCChH-HHHhhhhhhhhccccccc
Q 014946 171 AGY-LTVGVVTYPFS---FEGRKRSSQALEAIERLQKNVDTLIVIPNDRLLDITDEQTALQ-DAFLLADDVLRQGVQGIS 245 (415)
Q Consensus 171 ~g~-~tvavvtlP~~---~Eg~~r~~nA~~~l~~L~e~~D~viv~dNd~L~~~~~~~~~i~-~af~~~N~~i~~~i~~It 245 (415)
|+. .++++.+.|+. .+.++++||+.++++.|.+++|.+++|||++|+++|...+.+. +.|..+|++|++.++++|
T Consensus 161 y~~~~~~~~~v~P~~~~~~~~vv~~YN~~lsl~~l~~~~D~~~~~dN~al~~ic~~~l~i~~p~~~dlN~lIA~~ls~~T 240 (454)
T PLN00222 161 YSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVDRLHLENPTFAQTNSLVSTVMSAST 240 (454)
T ss_pred cCCcceeeEEecCCCcccCCceeeecHHHHhHHHHHhcCCeeeEecHHHHHHHHHHhcCCCCCCHHHHHHHhccccCCcc
Confidence 554 46666666764 3446899999999999999999999999999999997666664 589999999999999999
Q ss_pred cccccCceeeechhhhhhhccC-CCeeEEEeeecCCcchH----------HHHHHHHhc--ccccccCccc-----cccc
Q 014946 246 DIITIPGLVNVDFADVKAVMKD-SGTAMLGVGVSSSKNRA----------EEAAEQATL--APLIGSSIQS-----ATGV 307 (415)
Q Consensus 246 ~~i~~~G~invD~~di~t~L~~-~g~~~ig~G~a~g~~ra----------~~A~~~Al~--spll~~~i~~-----a~g~ 307 (415)
..+||||.+|.|+.++.++|.| +.++|+.++++|..... .+.+.+.+. +.+...+... .+.+
T Consensus 241 ~s~Rfpg~ln~dl~~l~~nLvP~P~lhfl~~s~~P~~~~~~~~~~~~~s~~~~~~~l~~~~n~~~~~~~~~~~~~~~k~l 320 (454)
T PLN00222 241 TTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYI 320 (454)
T ss_pred cccCCCCccCCCHHHHhhhcCCCCCceeeccccccccccccccceeeCCHHHHHHHHhcccCceeecCCccccccccchH
Confidence 9999999999999999999999 58999999999874321 122333332 1222233222 4555
Q ss_pred eEEeecCCCCCHHHHHHHHHHHHhh--cC----CCCcEEEEeeecCCC---CCeEEEEEEEeCC
Q 014946 308 VYNITGGKDITLQEVNRVSQVVTSL--AD----PSANIIFGAVVDDRY---NGEIHVTIIATGF 362 (415)
Q Consensus 308 Lv~I~gg~disl~ev~~i~~~i~~~--~~----~~a~Ii~G~~~d~~l---~~~i~VtvIatG~ 362 (415)
.+.+..+++++..|+.+.+..+++. .. .+..++++++..++. +.+..+++|+..-
T Consensus 321 a~~~~~RG~~~~~~v~~~~~~~~~~~~~~fv~W~p~~~k~~~~~~~~~~~~~~~~s~~~lsNst 384 (454)
T PLN00222 321 SILNIIQGEVDPTQVHKSLQRIRERKLANFIEWGPASIQVALSRKSPYVQTAHRVSGLMLANHT 384 (454)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHhhhCCccccccCCCCEeeeeccCCCCCCCCCceEEEEEeCCH
Confidence 5444444589999999999988865 11 145788998876664 3467788887643
No 18
>cd02188 gamma_tubulin Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily. Gamma is a low abundance protein present within the cells in both various types of microtubule-organizing centers and cytoplasmic protein complexes. Gamma-tubulin recruits the alpha/beta-tubulin dimers that form the minus ends of microtubules and is thought to be involved in microtubule nucleation and capping.
Probab=100.00 E-value=1.2e-31 Score=277.07 Aligned_cols=303 Identities=16% Similarity=0.197 Sum_probs=226.5
Q ss_pred eEEEEeeCcchHHHHHHHHH-----cCCC-------------------------c---eEEEEEECCHHHHhcCCCC--C
Q 014946 60 KIKVVGVGGGGNNAVNRMIG-----SGLQ-------------------------G---VDFYAINTDSQALLQSAAE--N 104 (415)
Q Consensus 60 ~i~vIGvGgaG~niv~~l~~-----~~~~-------------------------~---v~~iainTD~~~L~~~~~~--~ 104 (415)
.|..|-|||||+.|-+.+++ +++. + .+++.||+|++.++++... .
T Consensus 2 EiI~i~iGQcGnqIG~~~We~l~~eh~~~~~g~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~Ep~vi~~i~~~~~~ 81 (431)
T cd02188 2 EIITLQVGQCGNQIGSEFWKQLCAEHGISPDGILEDFATDGGDRKDVFFYQADDEHYVPRAILIDLEPRVINSIQNSEYR 81 (431)
T ss_pred cEEEEEcCchHhHHHHHHHHHHHHHhCCCCCCCcCCCccccccccceeEEECCCCccCCcceeccCCcchhhhhhcCccc
Confidence 37889999999999998862 2220 0 3568899998888766331 1
Q ss_pred Ceeccccc-c--ccCCCCCCchhhHH----HHHHHHHHHHHHhcCCC---EEEEeccCCCCccCChHHHHHHHHHH-hCC
Q 014946 105 PLQIGDLL-T--RGLGTGGNPLLGEQ----AAEESKEVIANALKGSD---LVFITAGMGGGTGSGAAPVVAQIAKE-AGY 173 (415)
Q Consensus 105 ki~ig~~~-t--~G~GaG~n~~~G~~----~aee~~e~I~~~le~~D---~~~I~agLGGGTGSG~apvia~~ake-~g~ 173 (415)
++.=.+.+ . .|.|+|+||+.|+. ..++.+|.||+++|.|| +|+|+||||||||||++++|++.+++ |+.
T Consensus 82 ~lf~~~~~~~~~~~~gagnnwa~Gy~~g~~~~d~i~d~ir~~~E~cd~l~gf~i~~SlgGGTGSG~gs~l~e~L~d~y~~ 161 (431)
T cd02188 82 NLYNPENIFLSKHGGGAGNNWASGYSQGEEVQEEILDIIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLERLNDRYPK 161 (431)
T ss_pred cccCccceEeeccCCCccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeEEEecCCCCcchhHHHHHHHHHHhHcCc
Confidence 22212222 1 23499999998765 45666677788888896 89999999999999999999987776 554
Q ss_pred -ceEEEEecCCCC---chhhhHHHHHHHHHHHHhhCCEEEEEeCchhhhhccccCChH-HHHhhhhhhhhcccccccccc
Q 014946 174 -LTVGVVTYPFSF---EGRKRSSQALEAIERLQKNVDTLIVIPNDRLLDITDEQTALQ-DAFLLADDVLRQGVQGISDII 248 (415)
Q Consensus 174 -~tvavvtlP~~~---Eg~~r~~nA~~~l~~L~e~~D~viv~dNd~L~~~~~~~~~i~-~af~~~N~~i~~~i~~It~~i 248 (415)
.++++++.|+.. +.++++|||.++++.|.+++|.+++|||++|++++...+.+. +.|..+|++|++.++++|..+
T Consensus 162 ~~~~~~~V~P~~~~~s~~~v~~YN~~lsl~~l~e~~d~~~~~dN~al~~i~~~~l~~~~~~~~~~N~~ia~~ls~~t~~~ 241 (431)
T cd02188 162 KLIQTYSVFPNQDESSDVVVQPYNSILTLKRLILNADCVVVLDNTALNRIATDRLHIQNPTFDQINSLVSTVMSASTTTL 241 (431)
T ss_pred ceeeeEEecCCCccCCCccceecHHHHHHHHHHHhCCeeeecchHHHHHHHHHhcCCCCCCHHHHHHHHhccCCCcccce
Confidence 366666677644 446999999999999999999999999999999997666554 489999999999999999999
Q ss_pred ccCceeeechhhhhhhccC-CCeeEEEeeecCCcchH----------HHHHHHHhc--ccccccCc-cccccceEEeecC
Q 014946 249 TIPGLVNVDFADVKAVMKD-SGTAMLGVGVSSSKNRA----------EEAAEQATL--APLIGSSI-QSATGVVYNITGG 314 (415)
Q Consensus 249 ~~~G~invD~~di~t~L~~-~g~~~ig~G~a~g~~ra----------~~A~~~Al~--spll~~~i-~~a~g~Lv~I~gg 314 (415)
|+||.+|.|+.++.++|.| +.++|+.++++|..... .+.++..++ +.+...+. ...+.+.+.+..+
T Consensus 242 Rf~g~ln~dl~~i~tnLvP~P~lhfl~~s~~P~~~~~~~~~~~~~s~~~l~~~l~~~~n~m~~~~~~~~~k~la~~~~~R 321 (431)
T cd02188 242 RYPGYMNNDLISLIASLIPTPRLHFLMTSYTPLTSDQIAASVRKTTVLDVMRRLLQPKNIMVSTATRKNGCYISILNIIQ 321 (431)
T ss_pred ecCCccCCCHHHHHHhcCCCCCceeeccccCccccchhhcceecCCHHHHHHHHhccccceeecCCCccchhHHHHHHHc
Confidence 9999999999999999999 58999999999874321 122222222 11333444 5566666655545
Q ss_pred CCCCHHHHHHHHHHHHhhcC------CCCcEEEEeeecCCC---CCeEEEEEEEeCC
Q 014946 315 KDITLQEVNRVSQVVTSLAD------PSANIIFGAVVDDRY---NGEIHVTIIATGF 362 (415)
Q Consensus 315 ~disl~ev~~i~~~i~~~~~------~~a~Ii~G~~~d~~l---~~~i~VtvIatG~ 362 (415)
+++...|+++.+..+++... .+..+.++.+..++. +.+..+++|+..-
T Consensus 322 G~~~~~~~~~~~~~lk~~~~~~f~~W~p~~~~~~~~~~~~~~~~~~~~s~~~lsNst 378 (431)
T cd02188 322 GEVDPTQVHKSLQRIRERRLANFIPWGPASIQVALSKKSPYVPTAHRVSGLMLANHT 378 (431)
T ss_pred CCCCHHHHHHHHHHHHhhccccCcccCCCCEEEEEeccCCccCCCCceeEEEecCCh
Confidence 58999999999999886532 145788898855553 3467788888643
No 19
>PTZ00335 tubulin alpha chain; Provisional
Probab=99.98 E-value=9.3e-32 Score=279.05 Aligned_cols=302 Identities=12% Similarity=0.176 Sum_probs=224.1
Q ss_pred EEEEeeCcchHHHHHHHHH-----cCC--------------C----c------------eEEEEEECCHHHHhcCCCC--
Q 014946 61 IKVVGVGGGGNNAVNRMIG-----SGL--------------Q----G------------VDFYAINTDSQALLQSAAE-- 103 (415)
Q Consensus 61 i~vIGvGgaG~niv~~l~~-----~~~--------------~----~------------v~~iainTD~~~L~~~~~~-- 103 (415)
|..|-+||||+.|-+.+++ +++ . + .+++.||+|++.++.+...
T Consensus 4 iI~iqiGqcGnqiG~~fW~~~~~Eh~i~~~g~~~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~~i~~i~~~~~ 83 (448)
T PTZ00335 4 VISIHIGQAGIQVGNACWELFCLEHGIQPDGQMPSDKNIGVEDDAFNTFFSETGAGKHVPRCVFLDLEPTVIDEVRTGTY 83 (448)
T ss_pred EEEEeCCccHHHHHHHHHHHHHHHhCcCCCCCccCCCcccccchhhcceeEEcCCCccccccccccCCcchhhhcccCcc
Confidence 8899999999999998862 232 0 0 3457888888887766432
Q ss_pred CCeecccc-ccccCCCCCCchhh-----HHHHHHHHHHHHHHhcCCC---EEEEeccCCCCccCChHHHHHHHHHH-hC-
Q 014946 104 NPLQIGDL-LTRGLGTGGNPLLG-----EQAAEESKEVIANALKGSD---LVFITAGMGGGTGSGAAPVVAQIAKE-AG- 172 (415)
Q Consensus 104 ~ki~ig~~-~t~G~GaG~n~~~G-----~~~aee~~e~I~~~le~~D---~~~I~agLGGGTGSG~apvia~~ake-~g- 172 (415)
.++.=... +.+-.|+|+||+.| .+..++.+|.||+++|.|| +|+|+||||||||||+++.|.+.+++ |+
T Consensus 84 ~~l~~~~~~i~~~~gagnnwa~Gy~~~G~~~~d~i~d~ir~~~E~cD~l~gf~i~~Sl~GGTGSGlgs~l~e~l~d~yp~ 163 (448)
T PTZ00335 84 RQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVGGGTGSGLGSLLLERLSVDYGK 163 (448)
T ss_pred ccccCchheeecCCCCCCcccccccchhhhHhHHHHHHHHHhHHhccCccceeEeeccCCCccchHHHHHHHHHHHhccc
Confidence 12221222 22347999999875 5778999999999999998 68999999999999999999988777 54
Q ss_pred CceEEEEecCC--CCchhhhHHHHHHHHHHHHhhCCEEEEEeCchhhhhccccCChH-HHHhhhhhhhhccccccccccc
Q 014946 173 YLTVGVVTYPF--SFEGRKRSSQALEAIERLQKNVDTLIVIPNDRLLDITDEQTALQ-DAFLLADDVLRQGVQGISDIIT 249 (415)
Q Consensus 173 ~~tvavvtlP~--~~Eg~~r~~nA~~~l~~L~e~~D~viv~dNd~L~~~~~~~~~i~-~af~~~N~~i~~~i~~It~~i~ 249 (415)
..++++++.|+ ..|..+++||+.++|+.|.+++|.+++|||++|++++...+.+. +.|+.+|++|++.+.+++..+|
T Consensus 164 ~~~~~~~v~P~~~~~~~~v~~YN~~Lsl~~L~e~~d~~~~~dN~al~~i~~~~~~~~~~~~~~~N~~Ia~~is~~t~~~r 243 (448)
T PTZ00335 164 KSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVMLDNEAIYDICRRNLDIERPTYTNLNRLIAQVISSLTASLR 243 (448)
T ss_pred cceeeEEecCCCCCCCcceeehHHHHhHHHHHhhCCeeeeechHHHHHHHHHhcCCCCCCHHHHHHHHHhhhcccccccc
Confidence 34555556665 45889999999999999999999999999999999996656554 5899999999999999999999
Q ss_pred cCceeeechhhhhhhccC-CCeeEEEeeecCCcch---------HHHHHHHHhcc--cccccCccccccceEEeecCCCC
Q 014946 250 IPGLVNVDFADVKAVMKD-SGTAMLGVGVSSSKNR---------AEEAAEQATLA--PLIGSSIQSATGVVYNITGGKDI 317 (415)
Q Consensus 250 ~~G~invD~~di~t~L~~-~g~~~ig~G~a~g~~r---------a~~A~~~Al~s--pll~~~i~~a~g~Lv~I~gg~di 317 (415)
+||.+|.|+.++.++|.| +.++|+.++++|.... ..+.+.+.++. .+...+....+.+.+.+..++++
T Consensus 244 f~g~~~~dl~~l~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~n~~~~~~~~~~~~ls~~~~~RG~~ 323 (448)
T PTZ00335 244 FDGALNVDLTEFQTNLVPYPRIHFMLSSYAPIISAEKAYHEQLSVAEITNSAFEPANMMAKCDPRHGKYMACCLMYRGDV 323 (448)
T ss_pred cccccCCCHHHHhccccCCCCceecccccCcccccccccccCCCHHHHHHHhcCccceeEecCCCccchHHHHHHHcCCC
Confidence 999999999999999999 5899999999987432 11212222221 11122334555555444434489
Q ss_pred CHHHHHHHHHHHHhhcC------CCCcEEEEeeecCCC--------CCeEEEEEEEeCC
Q 014946 318 TLQEVNRVSQVVTSLAD------PSANIIFGAVVDDRY--------NGEIHVTIIATGF 362 (415)
Q Consensus 318 sl~ev~~i~~~i~~~~~------~~a~Ii~G~~~d~~l--------~~~i~VtvIatG~ 362 (415)
...++.+.+..++++.. .+..+.++++..++. +.+..+++|+..-
T Consensus 324 ~~~~i~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lsNst 382 (448)
T PTZ00335 324 VPKDVNAAIATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNST 382 (448)
T ss_pred CHHHHHHHHHHHHhhCCCcCCccCCCCEeeeecCCCCccCCCccccccceEEEEecCCc
Confidence 99999999998876521 145677888744332 2356678777643
No 20
>PLN00220 tubulin beta chain; Provisional
Probab=99.98 E-value=2.2e-31 Score=276.60 Aligned_cols=302 Identities=17% Similarity=0.181 Sum_probs=230.8
Q ss_pred EEEEeeCcchHHHHHHHHH-----cCCC----------------------------ceEEEEEECCHHHHhcCCCC-CCe
Q 014946 61 IKVVGVGGGGNNAVNRMIG-----SGLQ----------------------------GVDFYAINTDSQALLQSAAE-NPL 106 (415)
Q Consensus 61 i~vIGvGgaG~niv~~l~~-----~~~~----------------------------~v~~iainTD~~~L~~~~~~-~ki 106 (415)
|..|-+||||+.|-+.+++ +++. -.+++.||+|++.++.+... .+-
T Consensus 4 ii~i~iGqcGnqiG~~~w~~l~~eh~~~~~g~~~~~~~~~~~~~~~~f~e~~~~~~~pRav~iD~e~~~i~~i~~~~~~~ 83 (447)
T PLN00220 4 ILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGTYHGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPYGQ 83 (447)
T ss_pred eEEEecCccHhHHHHHHHHHHHHHhCCCCCCCcCCCcccccccccceeccCCCCcccceeEecCCcHHHHHHHhcCcccc
Confidence 7889999999999998862 2220 04568899998887765321 111
Q ss_pred eccc--cccccCCCCCCchhh-----HHHHHHHHHHHHHHhcCCC---EEEEeccCCCCccCChHHHHHHHHHH-hC---
Q 014946 107 QIGD--LLTRGLGTGGNPLLG-----EQAAEESKEVIANALKGSD---LVFITAGMGGGTGSGAAPVVAQIAKE-AG--- 172 (415)
Q Consensus 107 ~ig~--~~t~G~GaG~n~~~G-----~~~aee~~e~I~~~le~~D---~~~I~agLGGGTGSG~apvia~~ake-~g--- 172 (415)
++-+ .++.-.|+|+||+.| .+..++..|.||+++|.|| +|+|+||||||||||+++.|.+.+++ |+
T Consensus 84 ~~~~~~~~~~~~gagnnwa~G~~~~g~~~~~~~~d~ir~~~E~cd~l~gf~~~~sl~GGTGSG~gs~l~~~l~~~y~~~~ 163 (447)
T PLN00220 84 IFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRM 163 (447)
T ss_pred ccCccceEecccCCCCccCceeecccHHHHHHHHHHHHHHHHhCcCcCceEEEEecCCCccccHHHHHHHHHHHhccccc
Confidence 1211 123347999999875 5788999999999999998 89999999999999999998876666 65
Q ss_pred CceEEEEecCCCCchhhhHHHHHHHHHHHHhhCCEEEEEeCchhhhhccccCChH-HHHhhhhhhhhccccccccccccC
Q 014946 173 YLTVGVVTYPFSFEGRKRSSQALEAIERLQKNVDTLIVIPNDRLLDITDEQTALQ-DAFLLADDVLRQGVQGISDIITIP 251 (415)
Q Consensus 173 ~~tvavvtlP~~~Eg~~r~~nA~~~l~~L~e~~D~viv~dNd~L~~~~~~~~~i~-~af~~~N~~i~~~i~~It~~i~~~ 251 (415)
+.+++|+|.|+..|..+++|||.++|+.|.+++|++|+|||++|++++.....+. +.|+.+|+++++.+++++..+|+|
T Consensus 164 ~~~~~v~P~~~~~~~~v~~yN~~lsl~~l~~~~d~~i~~dN~aL~~i~~~~~~i~~~sf~~~N~lIa~~is~it~slRFp 243 (447)
T PLN00220 164 MLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFP 243 (447)
T ss_pred eeeeEEECCCcCCCCccchhHHHHhHHHHHhcCCceEEeehHHHHHHHHHhhcCCCCChHHHHhHhhccccccchhhccC
Confidence 3577788888888999999999999999999999999999999999987656653 599999999999999999999999
Q ss_pred ceeeechhhhhhhccC-CCeeEEEeeecCCcchH---------HHHHHHHhc--ccccccCccccccceEEeecCCCCCH
Q 014946 252 GLVNVDFADVKAVMKD-SGTAMLGVGVSSSKNRA---------EEAAEQATL--APLIGSSIQSATGVVYNITGGKDITL 319 (415)
Q Consensus 252 G~invD~~di~t~L~~-~g~~~ig~G~a~g~~ra---------~~A~~~Al~--spll~~~i~~a~g~Lv~I~gg~disl 319 (415)
|.+|.|+.++.++|.| +.++|+.++++|..... .+-+++.+. +.+...+....+++.+.+..+++++.
T Consensus 244 G~ln~~l~~l~~nLVP~P~l~Fl~~s~~P~~~~~~~~~~~~t~~~l~~~l~~~~n~l~~~~~~~gk~la~~~~~RG~~~~ 323 (447)
T PLN00220 244 GQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMST 323 (447)
T ss_pred CcCCccHHHHHHHhCCccceeEeecccCcccccccccccccCHHHHHHHHHhhhhcccccCCCCchhHHHHHHHcCCCCH
Confidence 9999999999999999 57999999998863211 111111111 11222333345556554444558999
Q ss_pred HHHHHHHHHHHhhcC------CCCcEEEEeeecCCCCCeEEEEEEEeCC
Q 014946 320 QEVNRVSQVVTSLAD------PSANIIFGAVVDDRYNGEIHVTIIATGF 362 (415)
Q Consensus 320 ~ev~~i~~~i~~~~~------~~a~Ii~G~~~d~~l~~~i~VtvIatG~ 362 (415)
.|+.+....++.+.. .+..++.+.+..++.+.+..+++|+..-
T Consensus 324 ~ev~~~~~~l~~~~~~~f~~W~p~~~~~~~~~~~~~~~~~s~~~l~N~t 372 (447)
T PLN00220 324 KEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMASTFIGNST 372 (447)
T ss_pred HHHHHHHHHHHhhCCCccccccCCCEEEeecCCCCCCcceeeEEecCch
Confidence 999999988865421 1457888888777776678888888743
No 21
>PTZ00010 tubulin beta chain; Provisional
Probab=99.98 E-value=1.9e-31 Score=276.73 Aligned_cols=302 Identities=17% Similarity=0.189 Sum_probs=228.0
Q ss_pred EEEEeeCcchHHHHHHHHH-----cCCC---------------------c-------eEEEEEECCHHHHhcCCCC-C-C
Q 014946 61 IKVVGVGGGGNNAVNRMIG-----SGLQ---------------------G-------VDFYAINTDSQALLQSAAE-N-P 105 (415)
Q Consensus 61 i~vIGvGgaG~niv~~l~~-----~~~~---------------------~-------v~~iainTD~~~L~~~~~~-~-k 105 (415)
|..|-+||||+.|-+.+++ +++. . .+++.||+|+..++.+... . +
T Consensus 4 ii~i~vGqcGnqiG~~~we~l~~eh~~~~~g~~~~~~~~~~~~~~~ff~e~~~~~~~pRav~iD~e~~vi~~i~~~~~~~ 83 (445)
T PTZ00010 4 IVHIQAGQCGNQIGSKFWEVISDEHGIDPTGTYQGDSDLQLERINVYYNEATGGRYVPRAVLMDLEPGTMDSVRAGPYGQ 83 (445)
T ss_pred EEEEeccchHhHHHHHHHHHHHHHhCCCCCCCCCCCCcccccccceeecccCCCceEEeeeeccCChhhhhhhcccchhh
Confidence 7889999999999887762 2220 0 2678999999988765321 1 1
Q ss_pred eecccc-ccccCCCCCCchhh-----HHHHHHHHHHHHHHhcCCC---EEEEeccCCCCccCChHHHHHHHHHH-hCC--
Q 014946 106 LQIGDL-LTRGLGTGGNPLLG-----EQAAEESKEVIANALKGSD---LVFITAGMGGGTGSGAAPVVAQIAKE-AGY-- 173 (415)
Q Consensus 106 i~ig~~-~t~G~GaG~n~~~G-----~~~aee~~e~I~~~le~~D---~~~I~agLGGGTGSG~apvia~~ake-~g~-- 173 (415)
+.=... +.+-.|+|+||+.| .+..++..+.||+++|.|| +|+|+||+|||||||+++.|.+.+++ |+.
T Consensus 84 lf~~~~~~~~~~gagNnwa~G~~~~g~~~~~~i~d~irk~~E~cd~l~gf~i~~Sl~GGTGSGlgs~l~e~L~dey~~~~ 163 (445)
T PTZ00010 84 LFRPDNFIFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQITHSLGGGTGSGMGTLLISKLREEYPDRI 163 (445)
T ss_pred hcCccceeecccCCccccccchhhhhHHHHHHHHHHHhhhhhhccCccceEEEeccCCCccccHHHHHHHHHHhhCCccc
Confidence 111111 22337999999875 5788999999999999987 89999999999999999999887766 653
Q ss_pred -ceEEEEecCCCCchhhhHHHHHHHHHHHHhhCCEEEEEeCchhhhhccccCChH-HHHhhhhhhhhccccccccccccC
Q 014946 174 -LTVGVVTYPFSFEGRKRSSQALEAIERLQKNVDTLIVIPNDRLLDITDEQTALQ-DAFLLADDVLRQGVQGISDIITIP 251 (415)
Q Consensus 174 -~tvavvtlP~~~Eg~~r~~nA~~~l~~L~e~~D~viv~dNd~L~~~~~~~~~i~-~af~~~N~~i~~~i~~It~~i~~~ 251 (415)
.+++|+|.|...+..+++||+.+++..|.+++|.+|+|||++|++++...+.+. +.|..+|++|++.++++|..+|+|
T Consensus 164 ~~~~~v~P~~~~~~~~v~~YN~~lsl~~l~~~~d~~i~~dN~al~~i~~~~l~~~~p~~~~lN~lIaq~is~~t~~~Rfp 243 (445)
T PTZ00010 164 MMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADESMCIDNEALYDICFRTLKLTTPTYGDLNHLVSAVMSGVTCCLRFP 243 (445)
T ss_pred eeeeEecCCcccCccchhhhHHHHhHHHHHhcCCceeeeccHHHHHHHHHhccCCCCCHHHHHHHHHhhccccccceecC
Confidence 345555554456788999999999999999999999999999999997666664 589999999999999999999999
Q ss_pred ceeeechhhhhhhccC-CCeeEEEeeecCCcchHHHHH----HHHhccccc-------ccCccccccceEEeecCCCCCH
Q 014946 252 GLVNVDFADVKAVMKD-SGTAMLGVGVSSSKNRAEEAA----EQATLAPLI-------GSSIQSATGVVYNITGGKDITL 319 (415)
Q Consensus 252 G~invD~~di~t~L~~-~g~~~ig~G~a~g~~ra~~A~----~~Al~spll-------~~~i~~a~g~Lv~I~gg~disl 319 (415)
|.+|.|+.++.++|.| +.++|+.++++|......... ...|...++ ..+....+.+.+.+..+++++.
T Consensus 244 g~ln~dl~~l~tnLvP~P~l~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~n~~~~~~~~~~k~la~~~~~RG~~~~ 323 (445)
T PTZ00010 244 GQLNSDLRKLAVNLVPFPRLHFFMMGFAPLTSRGSQQYRGLSVPELTQQMFDAKNMMCAADPRHGRYLTASALFRGRMST 323 (445)
T ss_pred CcccccHHHHHHHHhcCCCceeeecccCccccccccccccCCHHHHHHhHhcccceEeecCCCcchhHHHHHHHcCCCCH
Confidence 9999999999999999 589999999998743211110 011222222 2344455666655555558999
Q ss_pred HHHHHHHHHHHhhcC------CCCcEEEEeeecCCCCCeEEEEEEEeCC
Q 014946 320 QEVNRVSQVVTSLAD------PSANIIFGAVVDDRYNGEIHVTIIATGF 362 (415)
Q Consensus 320 ~ev~~i~~~i~~~~~------~~a~Ii~G~~~d~~l~~~i~VtvIatG~ 362 (415)
.|+.+.+..++++.. .+..+..+.+..++.+.+..+++++..-
T Consensus 324 ~~~~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~~~~~~~s~~~lsNst 372 (445)
T PTZ00010 324 KEVDEQMLNVQNKNSSYFVEWIPNNIKSSVCDIPPKGLKMSVTFIGNST 372 (445)
T ss_pred HHHHHHHHHHHhhCCccCccccCCCEEEeecCcCCcCccceEEEecCCc
Confidence 999999988865421 1467888888666666678888888753
No 22
>PLN00221 tubulin alpha chain; Provisional
Probab=99.97 E-value=9.4e-31 Score=271.72 Aligned_cols=301 Identities=13% Similarity=0.169 Sum_probs=224.9
Q ss_pred EEEEeeCcchHHHHHHHHH-----cCC--------------C-------------c---eEEEEEECCHHHHhcCCCCC-
Q 014946 61 IKVVGVGGGGNNAVNRMIG-----SGL--------------Q-------------G---VDFYAINTDSQALLQSAAEN- 104 (415)
Q Consensus 61 i~vIGvGgaG~niv~~l~~-----~~~--------------~-------------~---v~~iainTD~~~L~~~~~~~- 104 (415)
|..|-|||||+.|-+.+++ +++ . + .+++.||+|++.++.+....
T Consensus 4 iItiqvGQcGnQIG~~fW~~l~~Eh~i~~~g~~~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~~i~~i~~~~~ 83 (450)
T PLN00221 4 CISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTY 83 (450)
T ss_pred EEEEeCCchHHHHHHHHHHHHHHHhCcCCCCCccCCccccccchhhhhheeccCCcccccchhcCCCChhhhhhhccCcc
Confidence 8899999999999998863 332 0 0 35688899998887764321
Q ss_pred -Ceecccc-ccccCCCCCCchhh-----HHHHHHHHHHHHHHhcCCC---EEEEeccCCCCccCChHHHHHHHHHH-hC-
Q 014946 105 -PLQIGDL-LTRGLGTGGNPLLG-----EQAAEESKEVIANALKGSD---LVFITAGMGGGTGSGAAPVVAQIAKE-AG- 172 (415)
Q Consensus 105 -ki~ig~~-~t~G~GaG~n~~~G-----~~~aee~~e~I~~~le~~D---~~~I~agLGGGTGSG~apvia~~ake-~g- 172 (415)
++.=... +.+-.|+|+||+.| .+..++..|.||+++|.|| +|+|+|++|||||||.+..|.+.+++ |+
T Consensus 84 ~~lf~~~~~i~~~~gagNnwa~Gy~~~g~~~~~~i~d~ir~~~E~cD~l~gf~i~~Sl~GGtGSGlgs~~le~l~d~y~~ 163 (450)
T PLN00221 84 RQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGK 163 (450)
T ss_pred ccccCccceeccCCCccccccccccchhHHHHHHHHHHHHHHHHhccCccceeEeeccCCCccchHHHHHHHHHHHhccc
Confidence 1111122 22347999999875 5788999999999999998 79999999999999999998887766 55
Q ss_pred --CceEEEEecCCCCchhhhHHHHHHHHHHHHhhCCEEEEEeCchhhhhccccCChH-HHHhhhhhhhhccccccccccc
Q 014946 173 --YLTVGVVTYPFSFEGRKRSSQALEAIERLQKNVDTLIVIPNDRLLDITDEQTALQ-DAFLLADDVLRQGVQGISDIIT 249 (415)
Q Consensus 173 --~~tvavvtlP~~~Eg~~r~~nA~~~l~~L~e~~D~viv~dNd~L~~~~~~~~~i~-~af~~~N~~i~~~i~~It~~i~ 249 (415)
+.+++|+|.|...+..+++||+.++++.|.+++|.+++|||++|++++...+.+. +.|+.+|++|++.++++|.++|
T Consensus 164 ~~~~~~~v~P~~~~~~~vv~~YN~~Lsl~~l~e~~d~~~~~dN~al~~~~~~~~~~~~p~~~dlN~lIa~~is~~T~s~R 243 (450)
T PLN00221 164 KSKLGFTVYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQVISSLTASLR 243 (450)
T ss_pred ccceeeEeeCCCcCCCCchhhhHHHHhHHHHHhhCceeeecchHHHHHHHHhhcCCCCCCHHHHHHHHhhhccccccccc
Confidence 3467777666566778999999999999999999999999999999997666554 4899999999999999999999
Q ss_pred cCceeeechhhhhhhccC-CCeeEEEeeecCCcchH---------HHHHHHHhccc--ccccCccccccceEEeecCCCC
Q 014946 250 IPGLVNVDFADVKAVMKD-SGTAMLGVGVSSSKNRA---------EEAAEQATLAP--LIGSSIQSATGVVYNITGGKDI 317 (415)
Q Consensus 250 ~~G~invD~~di~t~L~~-~g~~~ig~G~a~g~~ra---------~~A~~~Al~sp--ll~~~i~~a~g~Lv~I~gg~di 317 (415)
|||.+|.|+.++.++|.| +.++|+.++++|..... .+.+.+.++.. +...+....+.+.+.+..++++
T Consensus 244 F~g~ln~dl~~l~~nLvP~P~lhfl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~~~l~~~~~~~~kyla~~~~~RG~~ 323 (450)
T PLN00221 244 FDGALNVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLMYRGDV 323 (450)
T ss_pred ccccccCCHHHHHHhcCCCCCceeeccccCccccccccccccCCHHHHHHHHhcccceeeecCCCcchHHHHHHHHcCCC
Confidence 999999999999999999 58999999999864321 12122222211 1122333455555544444589
Q ss_pred CHHHHHHHHHHHHhhcC------CCCcEEEEeeecCCC--------CCeEEEEEEEeC
Q 014946 318 TLQEVNRVSQVVTSLAD------PSANIIFGAVVDDRY--------NGEIHVTIIATG 361 (415)
Q Consensus 318 sl~ev~~i~~~i~~~~~------~~a~Ii~G~~~d~~l--------~~~i~VtvIatG 361 (415)
+..|+.+.+..++.+.. .+..+.++++..++. +.+..+++|+..
T Consensus 324 ~~~~v~~~~~~~~~~~~~~f~~W~p~~~~~~i~~~~~~~~~~~~~~~~~~s~~~l~Ns 381 (450)
T PLN00221 324 VPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNS 381 (450)
T ss_pred CHHHHHHHHHHHHhcCCccccccCCCCEeeeecCCCCccCCCccccccceeEEEecCC
Confidence 99999999988865421 145677887744432 234667777764
No 23
>cd02189 delta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. Delta-tubulin plays an essential role in forming the triplet microtubules of centrioles and basal bodies.
Probab=99.96 E-value=2.9e-28 Score=253.23 Aligned_cols=299 Identities=14% Similarity=0.174 Sum_probs=217.9
Q ss_pred EEEEeeCcchHHHHHHHHH-----cCCC------------------------ceEEEEEECCHHHHhcCCCCC----Cee
Q 014946 61 IKVVGVGGGGNNAVNRMIG-----SGLQ------------------------GVDFYAINTDSQALLQSAAEN----PLQ 107 (415)
Q Consensus 61 i~vIGvGgaG~niv~~l~~-----~~~~------------------------~v~~iainTD~~~L~~~~~~~----ki~ 107 (415)
|..|-|||||+.|-+.+++ +++. -.+++.||+|++.++.+.... .+.
T Consensus 2 iItiqvGQCGNQIG~~fw~~l~~Eh~~~~~g~~~~~~~~~~~ff~e~~~~~~~pRav~iD~ep~vi~~i~~~~~~~~~~f 81 (446)
T cd02189 2 VVTVQLGQCGNQLGHELFDTLAKEASSSDDEGYKYERDAQERFFSEKSDGQPIARSVLVDMEPKVIESTLSKSSGGTWKY 81 (446)
T ss_pred eEEEEcCcchhHHHHHHHHHHHHHhCCCCCCCccccccccceeecccCCCCcCCceeecCCCchHHHHhhcCCCCccccc
Confidence 5789999999999998862 2220 046799999999988774421 122
Q ss_pred ccc-cccccCCCCCCchh-----hHHHHHHHHHHHHHHhcCCC---EEEEeccCCCCccCChHHHHHHHHHH-hCC-ceE
Q 014946 108 IGD-LLTRGLGTGGNPLL-----GEQAAEESKEVIANALKGSD---LVFITAGMGGGTGSGAAPVVAQIAKE-AGY-LTV 176 (415)
Q Consensus 108 ig~-~~t~G~GaG~n~~~-----G~~~aee~~e~I~~~le~~D---~~~I~agLGGGTGSG~apvia~~ake-~g~-~tv 176 (415)
-.. .+++..|+|+||+. |.+..|+.+|.||+.+|.|| +|+++||||||||||+++.|.+.+++ |+. .++
T Consensus 82 ~~~~~~~~~~gagnnwa~Gy~~~g~~~~~~~~d~ir~~~E~cd~~~gf~~~~sl~GGtGSG~gs~l~e~l~d~y~~~~~~ 161 (446)
T cd02189 82 DKKNVICQQSGSGNNWAYGYYVHGPQIKEDILDLIRKEVEKCDSFEGFLVLHSLAGGTGSGLGSRVTELLRDEYPESLLL 161 (446)
T ss_pred CchheeecCCCCccchhccccccchhhHHHHHHHHHHHHHhCCCccceEEEecCCCCcchHHHHHHHHHHHHhcCcccee
Confidence 222 34456899999996 56889999999999999987 79999999999999999999988877 553 467
Q ss_pred EEEecCCC-CchhhhHHHHHHHHHHHHhhCCEEEEEeCchhhhhccccCChH-HHHhhhhhhhhcccccccccccc-C--
Q 014946 177 GVVTYPFS-FEGRKRSSQALEAIERLQKNVDTLIVIPNDRLLDITDEQTALQ-DAFLLADDVLRQGVQGISDIITI-P-- 251 (415)
Q Consensus 177 avvtlP~~-~Eg~~r~~nA~~~l~~L~e~~D~viv~dNd~L~~~~~~~~~i~-~af~~~N~~i~~~i~~It~~i~~-~-- 251 (415)
++++.|+. .|..+++||+.+++..|.+++|.+++|||++|++++.....+. +.|+.+|++|++.+.+++..+++ +
T Consensus 162 ~~~v~P~~~~~~~v~~yN~~lsl~~l~e~~d~~~~~dN~al~~~~~~~~~~~~~~~~~~N~~Ia~~l~~~~~~~r~~~~~ 241 (446)
T cd02189 162 NIVVWPYTTGEVIVQNYNTVLTLAHLYESSDAIILLENDDIHRICSKLRNLKNVSLSDINKVIAHQLASLLQPSLDSTGS 241 (446)
T ss_pred eeeccCCCCCcchhhhhhHHhhHHHHHhhCCeEEEecHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhHhhccCcc
Confidence 77777864 4778999999999999999999999999999999986655554 48999999999999999998876 6
Q ss_pred -----ceeeechhhhhhhccC-CCeeEEEeeecCCcch---------HHHHHHHHh----ccccccc-------------
Q 014946 252 -----GLVNVDFADVKAVMKD-SGTAMLGVGVSSSKNR---------AEEAAEQAT----LAPLIGS------------- 299 (415)
Q Consensus 252 -----G~invD~~di~t~L~~-~g~~~ig~G~a~g~~r---------a~~A~~~Al----~spll~~------------- 299 (415)
|..+.|+.++.++|.| +.++|+.++++|.... ..+.+++.. ....+..
T Consensus 242 ~~~~~~~~~~~l~~l~~nLvP~P~~~fl~~s~~P~~~~~~~~~~~~~~~~l~~~l~qm~~~~~~~~~~~~~~~~~~~~~~ 321 (446)
T cd02189 242 NGALAGRSTNPLNDLVEDLCPHPAYKLLTIRSLPQMPEKSLAFSTFSWSALLKRLHQMLIAGSFMEEGIDWTVRPEGSAA 321 (446)
T ss_pred cccccccccCCHHHHHhhCcCCCCceeeecccCCcccccccccccCCHHHHHHHHHHhhccccccccccccccccccccc
Confidence 3469999999999999 5899999999987431 122223221 1111211
Q ss_pred -------CccccccceEEeecCCCCCHHHHHHHHHHHHhhcC----CCCcEEEEeeecCCC--CCeEEEEEEEeCC
Q 014946 300 -------SIQSATGVVYNITGGKDITLQEVNRVSQVVTSLAD----PSANIIFGAVVDDRY--NGEIHVTIIATGF 362 (415)
Q Consensus 300 -------~i~~a~g~Lv~I~gg~disl~ev~~i~~~i~~~~~----~~a~Ii~G~~~d~~l--~~~i~VtvIatG~ 362 (415)
+....+.+.+.+..+++....++.+. +++... .+..+.++++..++. +.+..+++++..-
T Consensus 322 ~~~~~~~~~~~~~~ls~~~i~RG~~~~~~~~~~---~~~~~~f~~W~p~~~~~~~~~~~~~~~~~~~s~~~l~Nst 394 (446)
T cd02189 322 SLLSGNKSTHFNKSLANLLILRGKDVTSADERK---FRDPLLYVNWSPSPVRFSISSHKRSFSKYEKSVTLVSNSQ 394 (446)
T ss_pred cccccccCCcccceeeeeeeeeCCCchHHHHHH---HhccCcCCCcCCCCEeeeecCCCCCcCCcceeEEEEeCCc
Confidence 12234445444433346666666543 333211 245678888755543 3567788888754
No 24
>KOG1374 consensus Gamma tubulin [Cytoskeleton]
Probab=99.91 E-value=9.4e-24 Score=208.00 Aligned_cols=298 Identities=18% Similarity=0.249 Sum_probs=211.7
Q ss_pred CeEEEEeeCcchHHHHHHHHH-----cCCC----------------c------------eEEEEEECCHHHHhcCCCC--
Q 014946 59 AKIKVVGVGGGGNNAVNRMIG-----SGLQ----------------G------------VDFYAINTDSQALLQSAAE-- 103 (415)
Q Consensus 59 ~~i~vIGvGgaG~niv~~l~~-----~~~~----------------~------------v~~iainTD~~~L~~~~~~-- 103 (415)
..|.-+=+||||+-|--.+++ +|+. + -+++.+|..+.-+..+...
T Consensus 3 ~eIiTlQ~GQCGNQiG~efwk~L~~Ehgis~~g~l~d~~~~~~drKdvFFyqadd~~yipRAvLvDlEPrVIn~~~~~~~ 82 (448)
T KOG1374|consen 3 REIITLQLGQCGNQIGFEFWKQLCLEHGISPDGILEDFATEGADRKDVFFYQADDNHYIPRAVLVDLEPRVINQILSSPY 82 (448)
T ss_pred ceeEEEeccccccHHHHHHHHHHHHhcCCCcCCcccchhhhCccccccceeeccCCccccceeeeccchHHHhccccchh
Confidence 347778899999999887763 3331 0 2335666666655544221
Q ss_pred ------CCeeccccccccCCCCCCchhhH----HHHHHHHHHHHHHhcCCC---EEEEeccCCCCccCChHHHHHHHHHH
Q 014946 104 ------NPLQIGDLLTRGLGTGGNPLLGE----QAAEESKEVIANALKGSD---LVFITAGMGGGTGSGAAPVVAQIAKE 170 (415)
Q Consensus 104 ------~ki~ig~~~t~G~GaG~n~~~G~----~~aee~~e~I~~~le~~D---~~~I~agLGGGTGSG~apvia~~ake 170 (415)
..+.+- ..|.|||+||+-|+ +.-|+.++.|++.+|+|| +|+++|++.||||||.+..|.|.+++
T Consensus 83 s~l~n~eni~~s---~~ggGAGNNWA~GY~~G~~~~e~ImdiIdrEad~~DsleGF~l~hSiAGGTGSGlGS~llErL~d 159 (448)
T KOG1374|consen 83 SGLYNPENIFLS---DHGGGAGNNWASGYSQGERVQEDIMDIIDREADGSDSLEGFVLCHSIAGGTGSGLGSFLLERLND 159 (448)
T ss_pred hcccCccceEEe---cCCCCcccccccccccchhhHHHHHHHHHHhhcCCCcccceeEEEeecCCCCcchHHHHHHHHHH
Confidence 123332 25889999998765 556667777788888998 79999999999999999998877766
Q ss_pred -hC---CceEEEEecCC-CCchhhhHHHHHHHHHHHHhhCCEEEEEeCchhhhhccccCChH-HHHhhhhhhhhcccccc
Q 014946 171 -AG---YLTVGVVTYPF-SFEGRKRSSQALEAIERLQKNVDTLIVIPNDRLLDITDEQTALQ-DAFLLADDVLRQGVQGI 244 (415)
Q Consensus 171 -~g---~~tvavvtlP~-~~Eg~~r~~nA~~~l~~L~e~~D~viv~dNd~L~~~~~~~~~i~-~af~~~N~~i~~~i~~I 244 (415)
|+ +.|++|+|--. ..|-++.+||..++|++|.+++|+++|+||.+|.+++.+.+.++ +.|..+|++++..++..
T Consensus 160 rypkkliqtysVfPn~d~ssdVVVQpYNsiLtL~rL~~nsD~vVVlDN~AL~ria~~~l~i~~ptF~~iNqLvstims~s 239 (448)
T KOG1374|consen 160 RYPKKLVQTYSVFPNQDESSDVVVQPYNSILTLKRLTENSDCVVVLDNTALHRIAADRLHIQNPTFSQINQLVSTIMSAS 239 (448)
T ss_pred hchhhhheeeeeccCCCCccceEEecchHHHHHHHHhhCCCeEEEeccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhc
Confidence 54 35898885432 34567899999999999999999999999999999997766665 48999999999999999
Q ss_pred ccccccCceeeechhhhhhhccC-CCeeEEEeeecCCcchHHH--HHHHHh--c--ccccc-cC-----cc--ccccceE
Q 014946 245 SDIITIPGLVNVDFADVKAVMKD-SGTAMLGVGVSSSKNRAEE--AAEQAT--L--APLIG-SS-----IQ--SATGVVY 309 (415)
Q Consensus 245 t~~i~~~G~invD~~di~t~L~~-~g~~~ig~G~a~g~~ra~~--A~~~Al--~--spll~-~~-----i~--~a~g~Lv 309 (415)
|..+|+||++|-|+.++...|.| +.+||+.+|+.|....-.. +++++- + ..||. .+ .. ...-.++
T Consensus 240 t~t~r~p~Ym~n~l~~l~~~LiP~P~lhfl~~~~tP~~sd~~~~~~~rkttvldvmRrLL~pkn~mvs~~~~~~~~~~~~ 319 (448)
T KOG1374|consen 240 TTTLRYPGYMNNDLIGLYASLIPTPELHFLMTGYTPLTSDNSLATAVRKTTVLDVMRRLLQPKNMMVSTADDLSGNPCYI 319 (448)
T ss_pred cccccchhhccCcHHHHHhhcCCCCCeeeeeccCCcccChhhhhhhhhcchHHHHHHHHhCcchhhhhccccccCCcchH
Confidence 99999999999999999999999 5899999999997443222 233321 1 12221 11 01 1111111
Q ss_pred ---EeecCCCCCHHHHHHHHHHHHhh--cC------CCCcEEEEeeec-CCCCCeEEEEEEEe
Q 014946 310 ---NITGGKDITLQEVNRVSQVVTSL--AD------PSANIIFGAVVD-DRYNGEIHVTIIAT 360 (415)
Q Consensus 310 ---~I~gg~disl~ev~~i~~~i~~~--~~------~~a~Ii~G~~~d-~~l~~~i~VtvIat 360 (415)
++..| .+...++.+.+..++++ ++ +.-++.|+-+.+ -+...+++.+++++
T Consensus 320 si~n~iqg-~vdp~~v~~s~~r~~dr~~a~f~~w~~~si~val~k~spy~~~~~~vSglml~N 381 (448)
T KOG1374|consen 320 SILNIIQG-EVDPTQVHKSLQRIRDRKLANFIPWGPASIQVALSKKSPYVQRAHRVSGLMLAN 381 (448)
T ss_pred hHHhhhhc-ccCHHHHHHHHHHHHhcccccCCCCCCHHHHhhhhcCCCccccccceeeeeecc
Confidence 33333 57789999999999876 22 123334444322 12246788888886
No 25
>PF12327 FtsZ_C: FtsZ family, C-terminal domain; InterPro: IPR024757 The FtsZ family of proteins are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ is a GTPase, like tubulin []. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea []. This entry represents a domain of FtsZ. In most FtsZ proteins is found in the C terminus, except in some alphaproteobacteria proteins where there is an extension C-terminal domain TIGR03483 from TIGRFAMs.; PDB: 2RHO_B 2RHJ_A 2VXY_A 2RHL_B 2RHH_A 2VAM_A 1W5F_B 2R75_1 2R6R_1 1RQ7_A ....
Probab=99.84 E-value=1.6e-20 Score=155.78 Aligned_cols=95 Identities=54% Similarity=0.843 Sum_probs=87.4
Q ss_pred CeeEEEeeecCCcchHHHHHHHHhcccccccCccccccceEEeecCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeeecCC
Q 014946 269 GTAMLGVGVSSSKNRAEEAAEQATLAPLIGSSIQSATGVVYNITGGKDITLQEVNRVSQVVTSLADPSANIIFGAVVDDR 348 (415)
Q Consensus 269 g~~~ig~G~a~g~~ra~~A~~~Al~spll~~~i~~a~g~Lv~I~gg~disl~ev~~i~~~i~~~~~~~a~Ii~G~~~d~~ 348 (415)
|.++||+|.+++++|+.+|+++||++|||+.++++|+++|++|++++++++.|++++++.+++..+++++|+||++++|+
T Consensus 1 G~A~iGiG~a~G~~r~~~Av~~Al~spLl~~~i~~A~~vLvni~~~~d~~l~ev~~~~~~i~~~~~~~a~ii~G~~id~~ 80 (95)
T PF12327_consen 1 GRAMIGIGEASGENRAEEAVEQALNSPLLDVDIKGAKGVLVNITGGPDLSLSEVNEAMEIIREKADPDANIIWGASIDEE 80 (95)
T ss_dssp EEEEEEEEEEESTTHHHHHHHHHHTSTTSTS-GGG-SEEEEEEEE-TTS-HHHHHHHHHHHHHHSSTTSEEEEEEEE-TT
T ss_pred CeEEEEEEEECCccHHHHHHHHHHhCccccCChHHhceEEEEEEcCCCCCHHHHHHHHHHHHHHhhcCceEEEEEEECCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEEEEeCCC
Q 014946 349 YNGEIHVTIIATGFS 363 (415)
Q Consensus 349 l~~~i~VtvIatG~~ 363 (415)
++++++||+|||||+
T Consensus 81 l~d~i~VtiIaTG~~ 95 (95)
T PF12327_consen 81 LEDEIRVTIIATGFD 95 (95)
T ss_dssp GTTEEEEEEEEECEG
T ss_pred CCCeEEEEEEEEcCC
Confidence 999999999999984
No 26
>KOG1376 consensus Alpha tubulin [Cytoskeleton]
Probab=99.80 E-value=1.4e-20 Score=185.14 Aligned_cols=238 Identities=13% Similarity=0.188 Sum_probs=188.6
Q ss_pred EEEECCHHHHhcCCCC---CCeeccccccccCCCCCCchh-----hHHHHHHHHHHHHHHhcCCC---EEEEeccCCCCc
Q 014946 88 YAINTDSQALLQSAAE---NPLQIGDLLTRGLGTGGNPLL-----GEQAAEESKEVIANALKGSD---LVFITAGMGGGT 156 (415)
Q Consensus 88 iainTD~~~L~~~~~~---~ki~ig~~~t~G~GaG~n~~~-----G~~~aee~~e~I~~~le~~D---~~~I~agLGGGT 156 (415)
+.+|..+. ++.+..- +-.+..+.++.+..|++|++. |+|..+...++|++..+.|. .|+++|++||||
T Consensus 66 ~fVDlEPt-idevrtG~y~~lfHPeqlitGkedAannyArghyt~g~e~id~~~~~Ir~~Ad~C~glqgflvFhs~GGgt 144 (407)
T KOG1376|consen 66 VFVDLEPT-IDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADLCTGLQGFLVFHSFGGGT 144 (407)
T ss_pred EEEeccCc-cchhcccchhhccCchhccCcchHhhhhHHhhhhhcchhhhHHHHHHHHHHHHhhccccceEEEEeccCCC
Confidence 45555544 4443322 112333455666888888876 67888999999999999886 699999999999
Q ss_pred cCChHHHHH-HHHHHhCC---ceEEEEecCCCCchhhhHHHHHHHHHHHHhhCCEEEEEeCchhhhhccccCChH-HHHh
Q 014946 157 GSGAAPVVA-QIAKEAGY---LTVGVVTYPFSFEGRKRSSQALEAIERLQKNVDTLIVIPNDRLLDITDEQTALQ-DAFL 231 (415)
Q Consensus 157 GSG~apvia-~~ake~g~---~tvavvtlP~~~Eg~~r~~nA~~~l~~L~e~~D~viv~dNd~L~~~~~~~~~i~-~af~ 231 (415)
|||.++.+. .+..+||+ +-+++.+.|..++....|||....-+...+++|+.+.+||++.+++|..+..+. +.|.
T Consensus 145 Gsg~~s~lmerls~~~GKkskl~fsiypapqvSt~vvePynsiltth~tle~sD~sf~vdnea~Ydicr~~l~i~rPtyt 224 (407)
T KOG1376|consen 145 GSGLGSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCSFMVDNEAIYDICRRNLDIERPTYT 224 (407)
T ss_pred cCCccchhhhhhhhhhhhccccccccccCccccccccCCccccccceeecccCcceeecCchhhcchhhhccccCCcccc
Confidence 999987754 57777874 578899999999999999999999999999999999999999999998777775 5899
Q ss_pred hhhhhhhccccccccccccCceeeechhhhhhhccCCCeeEEEeeecCCcchHHHH-----HHHHhcccc-------ccc
Q 014946 232 LADDVLRQGVQGISDIITIPGLVNVDFADVKAVMKDSGTAMLGVGVSSSKNRAEEA-----AEQATLAPL-------IGS 299 (415)
Q Consensus 232 ~~N~~i~~~i~~It~~i~~~G~invD~~di~t~L~~~g~~~ig~G~a~g~~ra~~A-----~~~Al~spl-------l~~ 299 (415)
.+|.+++|.+++|+.++++.|..|+|+.++.++|+++.. +++.. ++..| ..+.+.+.. ..+
T Consensus 225 ~lnr~i~qVvSsitaSlrf~g~lnvdl~efqTnlVpypl------yap~~-s~~~a~he~~sv~~it~~~fe~~~qmvkc 297 (407)
T KOG1376|consen 225 NLNRLIAQVVSSITASLRFDGALNVDLTEFQTNLVPYPL------YAPVI-SAEKAYHEQLSVAEITNACFEPANQMVKC 297 (407)
T ss_pred chhhhHHhhhcccccccccCCcccccHHHHHhhCCCCcc------cccch-hhcccchhhhhHHhhcccccccccccccc
Confidence 999999999999999999999999999999999999763 33321 11112 112233333 335
Q ss_pred CccccccceEEeecCCCCCHHHHHHHHHHHHhhc
Q 014946 300 SIQSATGVVYNITGGKDITLQEVNRVSQVVTSLA 333 (415)
Q Consensus 300 ~i~~a~g~Lv~I~gg~disl~ev~~i~~~i~~~~ 333 (415)
|..-++++++.+.+++|+-+.|++.++..|+.+-
T Consensus 298 DP~~gkyma~cllyrgdvvP~~v~~A~a~ikt~r 331 (407)
T KOG1376|consen 298 DPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKR 331 (407)
T ss_pred CCccchHHHHHHhccCCcCcccchHHHHhhhhcc
Confidence 7778899998888888999999999999998753
No 27
>KOG1375 consensus Beta tubulin [Cytoskeleton]
Probab=99.60 E-value=2.1e-16 Score=156.14 Aligned_cols=200 Identities=21% Similarity=0.256 Sum_probs=160.3
Q ss_pred EEEEeccCCCCccCChHHHHHHHHHH-hC---CceEEEEecCCCCchhhhHHHHHHHHHHHHhhCCEEEEEeCchhhhhc
Q 014946 145 LVFITAGMGGGTGSGAAPVVAQIAKE-AG---YLTVGVVTYPFSFEGRKRSSQALEAIERLQKNVDTLIVIPNDRLLDIT 220 (415)
Q Consensus 145 ~~~I~agLGGGTGSG~apvia~~ake-~g---~~tvavvtlP~~~Eg~~r~~nA~~~l~~L~e~~D~viv~dNd~L~~~~ 220 (415)
.|+++|++|||||+|.+.++.+-+++ +. ..++++++.|. ++++++||||.+++++|.+++|.++++||++|+++|
T Consensus 77 gfql~hs~gggtGsg~gt~l~~k~~ee~~d~i~~~~sv~ps~k-sd~vvepyna~ls~~ql~en~~et~cidNeal~dic 155 (369)
T KOG1375|consen 77 GFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTFSVVPSPK-SDTVVEPYNATLSVHQLVENADETFCIDNEALYDIC 155 (369)
T ss_pred cceeeeeccCccccCcchhhHHHHHHhccchhcccccccCccc-ccceecccccccchhhhhcCCCcccccccHHHHHHH
Confidence 79999999999999999887655554 43 24788888888 788999999999999999999999999999999998
Q ss_pred cccCChHHHHhhhhhhhhccccccccccccCceeeechhhhhhhccC-CCeeEEEeeecCCcchHHHHHHHHhccccccc
Q 014946 221 DEQTALQDAFLLADDVLRQGVQGISDIITIPGLVNVDFADVKAVMKD-SGTAMLGVGVSSSKNRAEEAAEQATLAPLIGS 299 (415)
Q Consensus 221 ~~~~~i~~af~~~N~~i~~~i~~It~~i~~~G~invD~~di~t~L~~-~g~~~ig~G~a~g~~ra~~A~~~Al~spll~~ 299 (415)
.....+. .-.+++...|++|..|.|+..+..+|.+ +++||+-.|+++...+..... .|+..|-+..
T Consensus 156 ~~~lkl~------------~~~g~tt~~rf~g~lnadl~kl~vnmvpfp~lhffm~g~~pl~s~~~~q~-~a~tv~eltq 222 (369)
T KOG1375|consen 156 FRTLKLK------------TPSGVTTCLRFPGQLNADLTKLAVNMVPFPRLHFFMPGFAPLTSRGSQQY-RALTVPELTQ 222 (369)
T ss_pred hhhhccc------------CCCCceeecccccccchhhhhhhhccCCCcchhhcccccccccccccccc-cccccccccc
Confidence 6432221 1117788899999999999999999998 589999999999765444333 6677777776
Q ss_pred CccccccceEEe--------ecCCCCCHHHHHHHHHHHHhhcCC------CCcEEEEeeecCCCCCeEEEEEEEeC
Q 014946 300 SIQSATGVVYNI--------TGGKDITLQEVNRVSQVVTSLADP------SANIIFGAVVDDRYNGEIHVTIIATG 361 (415)
Q Consensus 300 ~i~~a~g~Lv~I--------~gg~disl~ev~~i~~~i~~~~~~------~a~Ii~G~~~d~~l~~~i~VtvIatG 361 (415)
.+++++.++... .+| +++|+++.+..++.+... +.+++..+|..|+.+-++..|.++.-
T Consensus 223 q~fdaknmm~a~dyLt~a~~~rG---smkevDeqm~~vqnk~ss~f~~wiP~~vktavCdipp~glkms~tf~~n~ 295 (369)
T KOG1375|consen 223 QMFDAKNMMTACDYLTVAAMFRG---SMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPGGLKMSSTFIGNN 295 (369)
T ss_pred ccccCcchhhhhhhhhhHHHhcc---chhhhHHHhhhccccCcchhhhhcccccceeeccCCCccccccccccccc
Confidence 777777766532 244 789999999988876542 67899999988888889999988863
No 28
>smart00865 Tubulin_C Tubulin/FtsZ family, C-terminal domain. This domain is found in the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. These proteins are GTPases and are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea. This is the C-terminal domain.
Probab=99.36 E-value=8.2e-12 Score=105.92 Aligned_cols=115 Identities=51% Similarity=0.776 Sum_probs=100.4
Q ss_pred eeechhhhhhhccCCCeeEEEeeecCCcchHHHHHHHHhccccccc-CccccccceEEeecCCCCCHHHHHHHHHHHHhh
Q 014946 254 VNVDFADVKAVMKDSGTAMLGVGVSSSKNRAEEAAEQATLAPLIGS-SIQSATGVVYNITGGKDITLQEVNRVSQVVTSL 332 (415)
Q Consensus 254 invD~~di~t~L~~~g~~~ig~G~a~g~~ra~~A~~~Al~spll~~-~i~~a~g~Lv~I~gg~disl~ev~~i~~~i~~~ 332 (415)
+|+||+|++++|++++..++++|.+.+.+++.+|.+.++++||++. ++..+++++.++.++.++++.|++++++.+++.
T Consensus 1 in~D~~dl~~~L~p~~~~~~~~~~~~~~~~~~~a~~~~~~~~l~~~~~~~~a~~~~~~l~~~~~~~~~ev~~~~~~i~~~ 80 (120)
T smart00865 1 INVDFADVKTVMVPMGFAMMGIGPASGENRALEAAELAISSPLLEPSNIMGAKGVLVNITGGPDLTLKEVNEAMERIREK 80 (120)
T ss_pred CCCchHHHHHhccCCCeEEEEEEEecCCChHHHHHHHHHhCcccCCcchhhcCceEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 5899999999999999777777766666788999999999999985 578888888899988899999999999999998
Q ss_pred cCCCCcEEEEeeecCCC-CCeEEEEEEEeCCCccccc
Q 014946 333 ADPSANIIFGAVVDDRY-NGEIHVTIIATGFSQSFQK 368 (415)
Q Consensus 333 ~~~~a~Ii~G~~~d~~l-~~~i~VtvIatG~~~~~~~ 368 (415)
..+...+.||...++.+ .+.+++++|+||+...+++
T Consensus 81 ~~~~~~v~w~~~~~~~~~~~~~~i~ni~t~i~~~~~~ 117 (120)
T smart00865 81 ADPDAFIIWGPVIDEELGGDEIRVTVIATGIGSAFKR 117 (120)
T ss_pred cCCCceEEEccccCCcCCCCcEEEEEEecccCccccc
Confidence 76577899999888888 7899999999999887754
No 29
>PF13809 Tubulin_2: Tubulin like
Probab=99.07 E-value=1.1e-09 Score=110.78 Aligned_cols=144 Identities=26% Similarity=0.359 Sum_probs=97.9
Q ss_pred EEEeeCcchHHHHHHHHHc---------CCCceEEEEEECCHH-------------HHhcC---CC----C---------
Q 014946 62 KVVGVGGGGNNAVNRMIGS---------GLQGVDFYAINTDSQ-------------ALLQS---AA----E--------- 103 (415)
Q Consensus 62 ~vIGvGgaG~niv~~l~~~---------~~~~v~~iainTD~~-------------~L~~~---~~----~--------- 103 (415)
+|||+||.|+.++.+|.+. ..+.+.|++||||.. .+... .. .
T Consensus 1 lvIGlGGTG~~~l~~l~~~l~~~~~~~~~~~~v~Fl~iDt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (345)
T PF13809_consen 1 LVIGLGGTGGKILARLRRRLREELGGLELPPCVQFLYIDTDENSGLADGRSHGVGISLDEIEKLYAFITSSDLSQRLDRL 80 (345)
T ss_pred CEEEeCchHHHHHHHHHHHHHHHhcCcCCCCcEEEEEEEcCcccccccccccccccccCchhhcccccchhhHHHHHhcc
Confidence 4899999999999999743 235699999999988 11110 00 0
Q ss_pred ------CCeeccccc-----cccCCCCCCchhhHHHHHHHHHH----HHHHhc---------CC-C---EEEEeccCCCC
Q 014946 104 ------NPLQIGDLL-----TRGLGTGGNPLLGEQAAEESKEV----IANALK---------GS-D---LVFITAGMGGG 155 (415)
Q Consensus 104 ------~ki~ig~~~-----t~G~GaG~n~~~G~~~aee~~e~----I~~~le---------~~-D---~~~I~agLGGG 155 (415)
+.+ ++... .-..|||.-+.+|+-+.-...++ |.++++ .. + .|||++||+||
T Consensus 81 ~~~~~i~~W-~p~~~~~~~~~~~~GAgq~R~~GRla~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~V~Vv~SlaGG 159 (345)
T PF13809_consen 81 SAYPEIAEW-LPPELERNNTPLSAGAGQIRALGRLAFFSNYQEIREALEAALDNFMQERLGGKGGGGGLNVFVVGSLAGG 159 (345)
T ss_pred cCCchhhhc-CCccccccCCchhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCcEEEEEEecCCc
Confidence 001 11111 12478999999998765444444 444444 11 1 59999999999
Q ss_pred ccCChHHHHHHHHHHh----C---CceEEEEecCCCCch-----hhhHHHHHHHHHHHHhhCC
Q 014946 156 TGSGAAPVVAQIAKEA----G---YLTVGVVTYPFSFEG-----RKRSSQALEAIERLQKNVD 206 (415)
Q Consensus 156 TGSG~apvia~~ake~----g---~~tvavvtlP~~~Eg-----~~r~~nA~~~l~~L~e~~D 206 (415)
||||...=++.+++.. + ..+.+++++|..|++ .....||..+|.+|..+.+
T Consensus 160 TGSG~~lDia~~lr~~~~~~~~~~~~i~~~~~lP~~f~~~~~~~~~~~aNayAAL~EL~~~~~ 222 (345)
T PF13809_consen 160 TGSGMFLDIAYLLRDILKQPGQDNPRIYGFFVLPDAFPSIPGGGERVRANAYAALKELDYLMD 222 (345)
T ss_pred cchhHHHHHHHHHHHHhhcccCCCceEEEEEECCcccccCCcchhhhhhHHHHHHHHHHHHhC
Confidence 9999887777777662 1 358888999986655 3567799999999986543
No 30
>cd06060 misato Human Misato shows similarity with Tubulin/FtsZ family of GTPases and is localized to the the outer membrane of mitochondria. It has a role in mitochondrial fusion and in mitochondrial distribution and morphology. Mutations in its Drosophila homolog (misato) lead to irregular chromosome segregation during mitosis. Deletion of the budding yeast homolog DML1 is lethal and unregulate expression of DML1 leads to mitochondrial dispersion and abnormalities in cell morphology. The Misato/DML1 protein family is conserved from yeast to human, but its exact function is still unknown.
Probab=98.71 E-value=5.3e-08 Score=102.64 Aligned_cols=156 Identities=11% Similarity=0.086 Sum_probs=104.4
Q ss_pred CCCCCCchhhHHHHHHHHHHHHHHhcCCC---EEEEeccCCCCccCChHHHHHHHHH-HhCCc---eEEEEecCCC----
Q 014946 116 LGTGGNPLLGEQAAEESKEVIANALKGSD---LVFITAGMGGGTGSGAAPVVAQIAK-EAGYL---TVGVVTYPFS---- 184 (415)
Q Consensus 116 ~GaG~n~~~G~~~aee~~e~I~~~le~~D---~~~I~agLGGGTGSG~apvia~~ak-e~g~~---tvavvtlP~~---- 184 (415)
.|.|.+.-.+.+..++..|+||+.+|+|| +|+|+++++||| +|++..+.+.++ ||+.. ++++.+.|..
T Consensus 121 fg~G~~~f~~~~~~d~~~DrIR~~vEeCD~LQGFqi~~sl~gG~-sG~gs~lLE~L~DEy~k~~i~~~~v~P~~~~~~~~ 199 (493)
T cd06060 121 FGQGESLWQDESFQEEFEDRLRFYVEECDYLQGFQVLCDLHDGF-SGVGAKCLEHLQDEYGKASLLFPGLPPVIPPDASS 199 (493)
T ss_pred cccChhhhcchhhHHHHHHHHHHHHHhCcccccEEEEEecCCcc-cchHHHHHHHHHHhcCccceeEEEeCCCccccccc
Confidence 45555555556678899999999999998 699999999999 999988776555 57643 3334443322
Q ss_pred CchhhhHHHHHHHHHHHHhhCCEEEEEeCch--hhhhccc----cCChH--HHHhhhhhhhhccccccccccccCceeee
Q 014946 185 FEGRKRSSQALEAIERLQKNVDTLIVIPNDR--LLDITDE----QTALQ--DAFLLADDVLRQGVQGISDIITIPGLVNV 256 (415)
Q Consensus 185 ~Eg~~r~~nA~~~l~~L~e~~D~viv~dNd~--L~~~~~~----~~~i~--~af~~~N~~i~~~i~~It~~i~~~G~inv 256 (415)
.+..+++||+.+++..|.+++|.++++.-.. |...... ...++ .-|. .-.+++-++.++|-..|..+.. .
T Consensus 200 ~~~vv~~yNs~LSl~~L~e~sdl~vPl~~~~~~w~~~~~p~~~~~l~~d~~~~~h-tSAllA~aldT~TLp~Rl~~~~-~ 277 (493)
T cd06060 200 DKNSIRVLNTALGLAQLSEHSSLFVPLSLSGTLWRKPGPPRTFPYLNYDAELPYH-TSALLATALDTLTLPYRLKSSP-S 277 (493)
T ss_pred chhHHHHHHHHHHHHHHHhcCCEEEEEecccccccCCCCCCCCcccccCCCCchH-HHHHHHHHHhhccccceeccCC-c
Confidence 1457899999999999999999999998653 3321110 01111 1121 2345666676777666655422 5
Q ss_pred chhhhhhhccCCCeeEEE
Q 014946 257 DFADVKAVMKDSGTAMLG 274 (415)
Q Consensus 257 D~~di~t~L~~~g~~~ig 274 (415)
++.++...|...|..++.
T Consensus 278 ~m~~l~~~l~~~gRki~~ 295 (493)
T cd06060 278 SLSGLCDDLSFSGRKVVA 295 (493)
T ss_pred cHHHHHHHhhhccchhhh
Confidence 688888888876644433
No 31
>cd02202 FtsZ_type2 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=96.83 E-value=0.0012 Score=67.25 Aligned_cols=71 Identities=17% Similarity=0.221 Sum_probs=60.1
Q ss_pred HHHHHHHHHhhcCCCCcEEEEeeecCCCCCeEEEEEEEeCCCccccccccCChhhhhHHhhhhccccccCCCCCCCCCC
Q 014946 322 VNRVSQVVTSLADPSANIIFGAVVDDRYNGEIHVTIIATGFSQSFQKTLLTNPKAAKVLDKAAGSQESRGVPLPLNTPT 400 (415)
Q Consensus 322 v~~i~~~i~~~~~~~a~Ii~G~~~d~~l~~~i~VtvIatG~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~ 400 (415)
.+++.+.++++...+ ...++++++.-+++++.+|++++++++.+ .++++|+++.++.++++.||||.++++
T Consensus 262 ~~r~~~a~~~a~~~~------L~~~~d~~~A~~~Li~i~g~~~~l~~~~~--~~~~~~i~~~~~~~~~~~g~~p~~~~~ 332 (349)
T cd02202 262 ISRITTLARKAAYGE------LTVPCDLTSADRALIVIAGPPEELSRKGI--EDGRKWLDEEIGGVEVRSGDYPVPGGD 332 (349)
T ss_pred hhHHHHHHHHHHcCC------CCCCCCcccCcEEEEEEEeCccccCHHHH--HHHHHHHHHHcCCeEEEEEecCCCCCC
Confidence 567777777765433 34667899999999999999989999999 899999999999999999999987654
No 32
>PF03953 Tubulin_C: Tubulin C-terminal domain; InterPro: IPR018316 This domain is found in the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. These proteins are GTPases and are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea. This is the C-terminal domain.; GO: 0003924 GTPase activity, 0005525 GTP binding, 0006184 GTP catabolic process, 0051258 protein polymerization, 0043234 protein complex; PDB: 3RYH_A 3RYI_A 3HKE_C 3HKD_C 3HKB_A 3N2K_A 3N2G_A 3HKC_C 3RYF_C 3RYC_A ....
Probab=96.36 E-value=0.022 Score=49.44 Aligned_cols=93 Identities=6% Similarity=0.072 Sum_probs=64.0
Q ss_pred CCeeEEEeeecCCcch---------HHHHHHHHhc--ccccccCccccccceEEeecCCCCCHHHHHHHHHHHHhhcC--
Q 014946 268 SGTAMLGVGVSSSKNR---------AEEAAEQATL--APLIGSSIQSATGVVYNITGGKDITLQEVNRVSQVVTSLAD-- 334 (415)
Q Consensus 268 ~g~~~ig~G~a~g~~r---------a~~A~~~Al~--spll~~~i~~a~g~Lv~I~gg~disl~ev~~i~~~i~~~~~-- 334 (415)
+++||+..+++|.... ..+-+++.++ +.++..+....+++.+.+..+++++..|+++.+..++++..
T Consensus 1 PrlHFl~~s~aP~~~~~~~~~~~~s~~~l~~~lf~~~n~m~~~~~~~gkyla~~~l~RG~v~~~di~~~i~~ik~~~~~~ 80 (126)
T PF03953_consen 1 PRLHFLLSSYAPLTSPEDSNYEKLSVQDLTRQLFDPKNQMVSCDPRQGKYLACALLYRGDVSPKDINEAIAKIKQKNSIQ 80 (126)
T ss_dssp TTT-EEEEEESSTSBTTSTTSSCCTHHHHHHHHTSGGGBSSSS-TTSS-EEEEEEEEEESSTHHHHHHHHHHHHCTSTTS
T ss_pred CCeeeecCccccccccchhhhhcccHhHhhHHHHhhhhhccccccccchhhhhhhccccccccchhhhHHHhhhhccccc
Confidence 4689999999986433 2344444443 44556777788888876655558999999999999997643
Q ss_pred ----CCCcEEEEeeecCCCC---CeEEEEEEEe
Q 014946 335 ----PSANIIFGAVVDDRYN---GEIHVTIIAT 360 (415)
Q Consensus 335 ----~~a~Ii~G~~~d~~l~---~~i~VtvIat 360 (415)
.+..+++|++..++.. ...++++|+.
T Consensus 81 Fv~W~p~~~kv~~~~~~p~~~~~s~~s~~~LsN 113 (126)
T PF03953_consen 81 FVDWIPTGFKVGICKVPPYGQPNSDRSGLMLSN 113 (126)
T ss_dssp B-SSSTTCEEEEEESS-STSTTTSSEEEEEEEE
T ss_pred eeeecCchhhcccccCCCcccCCCcceEEEeCC
Confidence 2578999999777653 3456888875
No 33
>PF14881 Tubulin_3: Tubulin domain
Probab=96.25 E-value=0.022 Score=52.71 Aligned_cols=93 Identities=12% Similarity=0.055 Sum_probs=64.0
Q ss_pred CchhhHHHHH------HHHHH-HHHHhcCCC---EEEEeccCCCCccCChHHHHHHHHHHhCCceE--EEEecCCCC-ch
Q 014946 121 NPLLGEQAAE------ESKEV-IANALKGSD---LVFITAGMGGGTGSGAAPVVAQIAKEAGYLTV--GVVTYPFSF-EG 187 (415)
Q Consensus 121 n~~~G~~~ae------e~~e~-I~~~le~~D---~~~I~agLGGGTGSG~apvia~~ake~g~~tv--avvtlP~~~-Eg 187 (415)
++..|++..+ +..|+ ||..+|+|| +|.|+..+-+|=|.=++.+|..+..||+...+ +....+... ..
T Consensus 42 ~f~~G~~~f~~~~~~~d~~D~~lR~f~EECD~lQGfQ~~~d~d~gwgGfas~~Le~L~DEy~k~~i~~~~~~~~~~~~~~ 121 (180)
T PF14881_consen 42 TFGVGQELFKSLDYEEDFFDRDLRFFLEECDSLQGFQVLTDVDDGWGGFASSLLEHLRDEYPKKPIIWVWGLRDPSSSSR 121 (180)
T ss_pred cccchHHHHhhhhhhhHHHHHHHHHHHHHcccccceEEEecCCCchHhHHHHHHHHHHHHcCCCceEEeecCCCcccccc
Confidence 3455554432 33454 999999999 78999999888765455667777778987654 222222211 11
Q ss_pred ------hhhHHHHHHHHHHHHhhCCEEEEEeC
Q 014946 188 ------RKRSSQALEAIERLQKNVDTLIVIPN 213 (415)
Q Consensus 188 ------~~r~~nA~~~l~~L~e~~D~viv~dN 213 (415)
..+..|...++..|.++++.++.+..
T Consensus 122 ~~~~~~~~~~~N~a~s~~~L~~~ssl~vPl~~ 153 (180)
T PF14881_consen 122 DAPRKRRLRLLNKALSLSELSEQSSLFVPLST 153 (180)
T ss_pred chhhHHHHHHHHHHHHHHHHHhhCCEEEecCC
Confidence 23568999999999999999999973
No 34
>PRK06153 hypothetical protein; Provisional
Probab=94.87 E-value=0.17 Score=52.29 Aligned_cols=43 Identities=16% Similarity=0.377 Sum_probs=35.5
Q ss_pred CCCCCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHhc
Q 014946 55 PMETAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQ 99 (415)
Q Consensus 55 ~~~~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~~ 99 (415)
.....+|+|||+||-|+.+++.|.+.|+. ++..+|-|.-...+
T Consensus 173 kL~~~~VaIVG~GG~GS~Va~~LAR~GVg--eI~LVD~D~Ve~SN 215 (393)
T PRK06153 173 KLEGQRIAIIGLGGTGSYILDLVAKTPVR--EIHLFDGDDFLQHN 215 (393)
T ss_pred HHhhCcEEEEcCCccHHHHHHHHHHcCCC--EEEEECCCEecccc
Confidence 34567999999999999999999999975 67888887655444
No 35
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=94.52 E-value=0.35 Score=46.21 Aligned_cols=97 Identities=24% Similarity=0.388 Sum_probs=67.6
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHhcC-C--CCCCeeccccccccCCCCCCchhhHHHHHHHHHH
Q 014946 59 AKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQS-A--AENPLQIGDLLTRGLGTGGNPLLGEQAAEESKEV 135 (415)
Q Consensus 59 ~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~-~--~~~ki~ig~~~t~G~GaG~n~~~G~~~aee~~e~ 135 (415)
|++.|||.|..|..++..|.+.|- +.++|+.|....... . .......|. +. +.+.
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~---~Vv~Id~d~~~~~~~~~~~~~~~~v~gd--------~t-----------~~~~ 58 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGH---NVVLIDRDEERVEEFLADELDTHVVIGD--------AT-----------DEDV 58 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCC---ceEEEEcCHHHHHHHhhhhcceEEEEec--------CC-----------CHHH
Confidence 689999999999999999999873 478999999987762 2 222333332 11 3345
Q ss_pred HHHH-hcCCCEEEEeccCCCCccCChH-HHHHHHHHH-hCCc-eEEEEecCC
Q 014946 136 IANA-LKGSDLVFITAGMGGGTGSGAA-PVVAQIAKE-AGYL-TVGVVTYPF 183 (415)
Q Consensus 136 I~~~-le~~D~~~I~agLGGGTGSG~a-pvia~~ake-~g~~-tvavvtlP~ 183 (415)
++++ ++++|+|+.+ ||..-. .+++.++++ +|.+ +++-+..|.
T Consensus 59 L~~agi~~aD~vva~------t~~d~~N~i~~~la~~~~gv~~viar~~~~~ 104 (225)
T COG0569 59 LEEAGIDDADAVVAA------TGNDEVNSVLALLALKEFGVPRVIARARNPE 104 (225)
T ss_pred HHhcCCCcCCEEEEe------eCCCHHHHHHHHHHHHhcCCCcEEEEecCHH
Confidence 5555 7899998876 556544 557788766 7875 666665554
No 36
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=93.71 E-value=1.5 Score=45.79 Aligned_cols=40 Identities=15% Similarity=0.209 Sum_probs=33.7
Q ss_pred CCCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHhc
Q 014946 57 ETAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQ 99 (415)
Q Consensus 57 ~~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~~ 99 (415)
..+||.|||.|-.|..++-.|.+.|. +.+.+|.|.+.++.
T Consensus 2 ~~~kI~VIGlG~~G~~~A~~La~~G~---~V~~~D~~~~~v~~ 41 (415)
T PRK11064 2 SFETISVIGLGYIGLPTAAAFASRQK---QVIGVDINQHAVDT 41 (415)
T ss_pred CccEEEEECcchhhHHHHHHHHhCCC---EEEEEeCCHHHHHH
Confidence 34789999999999999999999874 46788998887665
No 37
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=93.61 E-value=0.88 Score=39.47 Aligned_cols=41 Identities=17% Similarity=0.377 Sum_probs=33.1
Q ss_pred CCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHhcC
Q 014946 58 TAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQS 100 (415)
Q Consensus 58 ~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~ 100 (415)
..||.|+|+|+-|+.++..|...|+. ++..+|-|.-...++
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~--~i~lvD~d~v~~~nl 42 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVG--KITLVDDDIVEPSNL 42 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTS--EEEEEESSBB-GGGC
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCC--ceeecCCcceeeccc
Confidence 46899999999999999999999974 677888877665544
No 38
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=93.44 E-value=0.46 Score=44.55 Aligned_cols=43 Identities=21% Similarity=0.428 Sum_probs=34.3
Q ss_pred CCCCCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHhc
Q 014946 55 PMETAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQ 99 (415)
Q Consensus 55 ~~~~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~~ 99 (415)
...+.+|+|||+||.|+.++..|...|+. +...+|-|.-...+
T Consensus 18 kl~~~~VlviG~GglGs~ia~~La~~Gv~--~i~lvD~d~ve~sN 60 (202)
T TIGR02356 18 RLLNSHVLIIGAGGLGSPAALYLAGAGVG--TIVIVDDDHVDLSN 60 (202)
T ss_pred HhcCCCEEEECCCHHHHHHHHHHHHcCCC--eEEEecCCEEcccc
Confidence 34578899999999999999999999975 56678887554433
No 39
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=93.33 E-value=0.68 Score=47.03 Aligned_cols=44 Identities=14% Similarity=0.289 Sum_probs=35.6
Q ss_pred CCCCCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHhcC
Q 014946 55 PMETAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQS 100 (415)
Q Consensus 55 ~~~~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~ 100 (415)
.....+|+|||+|+.|+.++..|.+.|+. .+..+|-|.-.+.++
T Consensus 21 ~L~~~~VlIiG~GglGs~va~~La~aGvg--~i~lvD~D~ve~sNL 64 (338)
T PRK12475 21 KIREKHVLIVGAGALGAANAEALVRAGIG--KLTIADRDYVEWSNL 64 (338)
T ss_pred hhcCCcEEEECCCHHHHHHHHHHHHcCCC--EEEEEcCCccccccc
Confidence 34578899999999999999999999874 566788887655443
No 40
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=93.26 E-value=0.94 Score=39.58 Aligned_cols=38 Identities=26% Similarity=0.452 Sum_probs=31.4
Q ss_pred eEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHhc
Q 014946 60 KIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQ 99 (415)
Q Consensus 60 ~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~~ 99 (415)
||.|||+|+.|+.++..|...|+. ++..+|-|.-...+
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~--~i~ivD~d~v~~~n 38 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVG--KITLIDFDTVELSN 38 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCC--EEEEEcCCCcCcch
Confidence 589999999999999999999974 57788887654433
No 41
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=92.89 E-value=0.82 Score=42.95 Aligned_cols=96 Identities=23% Similarity=0.268 Sum_probs=61.7
Q ss_pred EEEEee-CcchHHHHHHHHHcCCCceEEEEEECCHHHHhcCC-CCCCeeccccccccCCCCCCchhhHHHHHHHHHHHHH
Q 014946 61 IKVVGV-GGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSA-AENPLQIGDLLTRGLGTGGNPLLGEQAAEESKEVIAN 138 (415)
Q Consensus 61 i~vIGv-GgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~~-~~~ki~ig~~~t~G~GaG~n~~~G~~~aee~~e~I~~ 138 (415)
|+|+|. |.-|..+++.|.+.+.+ +..+.=|.+........ ....+..+ |+ .+.+.+.+
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~-V~~l~R~~~~~~~~~l~~~g~~vv~~-----------d~--------~~~~~l~~ 60 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFS-VRALVRDPSSDRAQQLQALGAEVVEA-----------DY--------DDPESLVA 60 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGC-EEEEESSSHHHHHHHHHHTTTEEEES------------T--------T-HHHHHH
T ss_pred CEEECCccHHHHHHHHHHHhCCCC-cEEEEeccchhhhhhhhcccceEeec-----------cc--------CCHHHHHH
Confidence 789997 99999999999996644 66555454333222211 11122211 11 26688999
Q ss_pred HhcCCCEEEEeccCCCCccCChHHHHHHHHHHhCCceE
Q 014946 139 ALKGSDLVFITAGMGGGTGSGAAPVVAQIAKEAGYLTV 176 (415)
Q Consensus 139 ~le~~D~~~I~agLGGGTGSG~apvia~~ake~g~~tv 176 (415)
+++++|.+|++-+.-.........-+++.+++.|+..|
T Consensus 61 al~g~d~v~~~~~~~~~~~~~~~~~li~Aa~~agVk~~ 98 (233)
T PF05368_consen 61 ALKGVDAVFSVTPPSHPSELEQQKNLIDAAKAAGVKHF 98 (233)
T ss_dssp HHTTCSEEEEESSCSCCCHHHHHHHHHHHHHHHT-SEE
T ss_pred HHcCCceEEeecCcchhhhhhhhhhHHHhhhccccceE
Confidence 99999998887664444445566678899999997655
No 42
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=92.77 E-value=0.78 Score=40.53 Aligned_cols=37 Identities=19% Similarity=0.381 Sum_probs=31.4
Q ss_pred CeEEEEee-CcchHHHHHHHHHcCCCceEEEEEECCHHH
Q 014946 59 AKIKVVGV-GGGGNNAVNRMIGSGLQGVDFYAINTDSQA 96 (415)
Q Consensus 59 ~~i~vIGv-GgaG~niv~~l~~~~~~~v~~iainTD~~~ 96 (415)
|||.|||. |.-|..++-.|...++. -+.+.+|.+.+.
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~-~ei~L~D~~~~~ 38 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLA-DEIVLIDINEDK 38 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTS-SEEEEEESSHHH
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCC-CceEEeccCccc
Confidence 79999999 99999999999988763 568889997543
No 43
>KOG2013 consensus SMT3/SUMO-activating complex, catalytic component UBA2 [Posttranslational modification, protein turnover, chaperones]
Probab=92.71 E-value=0.28 Score=51.64 Aligned_cols=42 Identities=26% Similarity=0.483 Sum_probs=35.6
Q ss_pred CCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEEC-CHHHHhc
Q 014946 58 TAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINT-DSQALLQ 99 (415)
Q Consensus 58 ~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainT-D~~~L~~ 99 (415)
..||+|||.||.||-....|...|+..+..|=.|| |...|++
T Consensus 12 ~~riLvVGaGGIGCELLKnLal~gf~~IhiIDlDTIDlSNLNR 54 (603)
T KOG2013|consen 12 SGRILVVGAGGIGCELLKNLALTGFEEIHIIDLDTIDLSNLNR 54 (603)
T ss_pred cCeEEEEecCcccHHHHHHHHHhcCCeeEEEeccceeccchhh
Confidence 57899999999999999999999998888777777 6666643
No 44
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=92.35 E-value=0.25 Score=47.91 Aligned_cols=45 Identities=29% Similarity=0.476 Sum_probs=35.0
Q ss_pred CCCCCCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHhcC
Q 014946 54 APMETAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQS 100 (415)
Q Consensus 54 ~~~~~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~ 100 (415)
+.-...++.|||+||.|+-+|+.|.++|+.. ...||-|.-++.+.
T Consensus 26 ekl~~~~V~VvGiGGVGSw~veALaRsGig~--itlID~D~v~vTN~ 70 (263)
T COG1179 26 EKLKQAHVCVVGIGGVGSWAVEALARSGIGR--ITLIDMDDVCVTNT 70 (263)
T ss_pred HHHhhCcEEEEecCchhHHHHHHHHHcCCCe--EEEEeccccccccc
Confidence 3444678999999999999999999999864 44667766666543
No 45
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=92.30 E-value=1.3 Score=44.66 Aligned_cols=37 Identities=19% Similarity=0.263 Sum_probs=29.7
Q ss_pred CCCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHH
Q 014946 57 ETAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQ 95 (415)
Q Consensus 57 ~~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~ 95 (415)
...||.|||.|..|..++..+...++. +.+.+|.|.+
T Consensus 5 ~~~KI~IIGaG~vG~~ia~~la~~gl~--~i~LvDi~~~ 41 (321)
T PTZ00082 5 KRRKISLIGSGNIGGVMAYLIVLKNLG--DVVLFDIVKN 41 (321)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCC--eEEEEeCCCc
Confidence 347999999999999999988888873 3667777555
No 46
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=92.20 E-value=1 Score=45.84 Aligned_cols=44 Identities=11% Similarity=0.294 Sum_probs=36.3
Q ss_pred CCCCCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHhcC
Q 014946 55 PMETAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQS 100 (415)
Q Consensus 55 ~~~~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~ 100 (415)
...+.+|+|||+||-|+.++..|.+.|+. +...+|.|.-.+.++
T Consensus 21 ~L~~~~VlVvG~GglGs~va~~La~aGvg--~i~lvD~D~Ve~sNL 64 (339)
T PRK07688 21 KLREKHVLIIGAGALGTANAEMLVRAGVG--KVTIVDRDYVEWSNL 64 (339)
T ss_pred HhcCCcEEEECCCHHHHHHHHHHHHcCCC--eEEEEeCCccCHHHc
Confidence 34578999999999999999999999874 577889887666554
No 47
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=91.63 E-value=0.26 Score=45.66 Aligned_cols=39 Identities=21% Similarity=0.304 Sum_probs=29.9
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHhcC
Q 014946 59 AKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQS 100 (415)
Q Consensus 59 ~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~ 100 (415)
|||.|||.|-.|.-.+-.|.+.|. +.+.+|.|.+..+.+
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~---~V~g~D~~~~~v~~l 39 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGH---QVIGVDIDEEKVEAL 39 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTS---EEEEE-S-HHHHHHH
T ss_pred CEEEEECCCcchHHHHHHHHhCCC---EEEEEeCChHHHHHH
Confidence 799999999999999999999884 589999999977654
No 48
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=91.40 E-value=0.51 Score=44.69 Aligned_cols=42 Identities=24% Similarity=0.370 Sum_probs=34.5
Q ss_pred CCCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHhcC
Q 014946 57 ETAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQS 100 (415)
Q Consensus 57 ~~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~ 100 (415)
...+|.|||+||.|+.++..|.+.|+. ++..+|-|.-.+.++
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~Gvg--~i~lvD~D~ve~sNL 68 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARSGVG--NLKLVDFDVVEPSNL 68 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHcCCC--eEEEEeCCEeccccc
Confidence 467899999999999999999999875 577888886554443
No 49
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=91.34 E-value=1.6 Score=39.10 Aligned_cols=95 Identities=25% Similarity=0.282 Sum_probs=60.7
Q ss_pred EEEEee-CcchHHHHHHHHHcCCCceEEEEEECCHHHHhcCCCCCCeeccccccccCCCCCCchhhHHHHHHHHHHHHHH
Q 014946 61 IKVVGV-GGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSAAENPLQIGDLLTRGLGTGGNPLLGEQAAEESKEVIANA 139 (415)
Q Consensus 61 i~vIGv-GgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~~~~~ki~ig~~~t~G~GaG~n~~~G~~~aee~~e~I~~~ 139 (415)
|+|+|- |..|..++..|++.+ .+..++--+.+.+.. ..++.+=. | |+ .+.+.+.++
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~---~~V~~~~R~~~~~~~---~~~~~~~~----~-----d~--------~d~~~~~~a 57 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRG---HEVTALVRSPSKAED---SPGVEIIQ----G-----DL--------FDPDSVKAA 57 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT---SEEEEEESSGGGHHH---CTTEEEEE----S-----CT--------TCHHHHHHH
T ss_pred eEEECCCChHHHHHHHHHHHCC---CEEEEEecCchhccc---ccccccce----e-----ee--------hhhhhhhhh
Confidence 689997 999999999999998 345566666666655 22232211 1 11 244788899
Q ss_pred hcCCCEEEEeccCCCCccCChHHHHHHHHHHhCCceEEEE
Q 014946 140 LKGSDLVFITAGMGGGTGSGAAPVVAQIAKEAGYLTVGVV 179 (415)
Q Consensus 140 le~~D~~~I~agLGGGTGSG~apvia~~ake~g~~tvavv 179 (415)
+++||.++.+.|-...- .-....+.+.+++.+...+-++
T Consensus 58 l~~~d~vi~~~~~~~~~-~~~~~~~~~a~~~~~~~~~v~~ 96 (183)
T PF13460_consen 58 LKGADAVIHAAGPPPKD-VDAAKNIIEAAKKAGVKRVVYL 96 (183)
T ss_dssp HTTSSEEEECCHSTTTH-HHHHHHHHHHHHHTTSSEEEEE
T ss_pred hhhcchhhhhhhhhccc-ccccccccccccccccccceee
Confidence 99999999888654442 1112235566667776544433
No 50
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=90.63 E-value=0.5 Score=45.46 Aligned_cols=42 Identities=29% Similarity=0.425 Sum_probs=35.0
Q ss_pred CCCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHhcC
Q 014946 57 ETAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQS 100 (415)
Q Consensus 57 ~~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~ 100 (415)
.+.+|+|||+||.|+.++..|.+.|+. ++..+|-|.-...++
T Consensus 10 ~~~~VlVvG~GGvGs~va~~Lar~GVg--~i~LvD~D~V~~sNl 51 (231)
T cd00755 10 RNAHVAVVGLGGVGSWAAEALARSGVG--KLTLIDFDVVCVSNL 51 (231)
T ss_pred hCCCEEEECCCHHHHHHHHHHHHcCCC--EEEEECCCEECchhh
Confidence 467899999999999999999999975 677888877655443
No 51
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=90.57 E-value=0.87 Score=44.87 Aligned_cols=46 Identities=26% Similarity=0.432 Sum_probs=37.6
Q ss_pred CCCCCCCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHhcC
Q 014946 53 FAPMETAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQS 100 (415)
Q Consensus 53 ~~~~~~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~ 100 (415)
.......+|+|||+||.|+.+++.|.+.|+. ++..+|-|.-...++
T Consensus 25 ~~kL~~s~VlVvG~GGVGs~vae~Lar~GVg--~itLiD~D~V~~sNl 70 (268)
T PRK15116 25 LQLFADAHICVVGIGGVGSWAAEALARTGIG--AITLIDMDDVCVTNT 70 (268)
T ss_pred HHHhcCCCEEEECcCHHHHHHHHHHHHcCCC--EEEEEeCCEeccccc
Confidence 3455678999999999999999999999975 567888887666553
No 52
>PRK05086 malate dehydrogenase; Provisional
Probab=90.48 E-value=1.5 Score=43.99 Aligned_cols=34 Identities=21% Similarity=0.286 Sum_probs=25.2
Q ss_pred CeEEEEee-CcchHHHHHHHHH-cCCCceEEEEEECC
Q 014946 59 AKIKVVGV-GGGGNNAVNRMIG-SGLQGVDFYAINTD 93 (415)
Q Consensus 59 ~~i~vIGv-GgaG~niv~~l~~-~~~~~v~~iainTD 93 (415)
|||.|||. |+.|..++-.|.. .+. ..+..+++.+
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~-~~el~L~d~~ 36 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPA-GSELSLYDIA 36 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCC-ccEEEEEecC
Confidence 79999999 9999999988754 333 3456666643
No 53
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=90.25 E-value=1.2 Score=41.57 Aligned_cols=41 Identities=15% Similarity=0.346 Sum_probs=34.5
Q ss_pred CCCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHhc
Q 014946 57 ETAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQ 99 (415)
Q Consensus 57 ~~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~~ 99 (415)
.+.+|.|||.||.|+.++..|...|+. ++..+|.|.-...+
T Consensus 18 ~~s~VlviG~gglGsevak~L~~~GVg--~i~lvD~d~ve~sn 58 (198)
T cd01485 18 RSAKVLIIGAGALGAEIAKNLVLAGID--SITIVDHRLVSTED 58 (198)
T ss_pred hhCcEEEECCCHHHHHHHHHHHHcCCC--EEEEEECCcCChhc
Confidence 368899999999999999999999985 57788988765544
No 54
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=90.25 E-value=0.78 Score=44.33 Aligned_cols=43 Identities=21% Similarity=0.459 Sum_probs=36.0
Q ss_pred CCCCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHhcC
Q 014946 56 METAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQS 100 (415)
Q Consensus 56 ~~~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~ 100 (415)
....+|.|+|+||.|+.++..|...|+. ++..+|-|.-.+.++
T Consensus 22 L~~~~VlvvG~GglGs~va~~La~~Gvg--~i~lvD~D~ve~sNL 64 (240)
T TIGR02355 22 LKASRVLIVGLGGLGCAASQYLAAAGVG--NLTLLDFDTVSLSNL 64 (240)
T ss_pred HhCCcEEEECcCHHHHHHHHHHHHcCCC--EEEEEeCCcccccCc
Confidence 4467899999999999999999999975 567889887766554
No 55
>PRK06223 malate dehydrogenase; Reviewed
Probab=89.99 E-value=2.7 Score=41.62 Aligned_cols=37 Identities=19% Similarity=0.248 Sum_probs=30.5
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHH
Q 014946 59 AKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQAL 97 (415)
Q Consensus 59 ~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L 97 (415)
+||.|||.|..|..++..+...++. +.+.+|.|.+.+
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~--ev~L~D~~~~~~ 39 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELG--DVVLFDIVEGVP 39 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCe--EEEEEECCCchh
Confidence 6999999999999999999888753 777888766544
No 56
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=89.97 E-value=7.1 Score=36.63 Aligned_cols=123 Identities=20% Similarity=0.187 Sum_probs=73.9
Q ss_pred CCCeEEEEeeCcchHHHHHHHHH--cC----CCceEEEEEECCHHHHhcCCCCCCeeccccccccCCCCCCchhhHHHHH
Q 014946 57 ETAKIKVVGVGGGGNNAVNRMIG--SG----LQGVDFYAINTDSQALLQSAAENPLQIGDLLTRGLGTGGNPLLGEQAAE 130 (415)
Q Consensus 57 ~~~~i~vIGvGgaG~niv~~l~~--~~----~~~v~~iainTD~~~L~~~~~~~ki~ig~~~t~G~GaG~n~~~G~~~ae 130 (415)
+.-||.++|+|+.|..+-+.-.+ .+ -.+..+++...|..-+.... ++. | ..+
T Consensus 40 ~~~rI~~~G~GgSa~~A~~~a~~l~~~~~~~r~gl~a~~l~~d~~~~ta~a------------------nd~--~--~~~ 97 (196)
T PRK10886 40 NGNKILCCGNGTSAANAQHFAASMINRFETERPSLPAIALNTDNVVLTAIA------------------NDR--L--HDE 97 (196)
T ss_pred cCCEEEEEECcHHHHHHHHHHHHHhccccccCCCcceEEecCcHHHHHHHh------------------ccc--c--HHH
Confidence 45789999999998875444332 11 23466777777776553321 110 1 123
Q ss_pred HHHHHHHHHhcCCCEEEEeccCCCCccCChHHHHHHHHHHhCCceEEEEecCCCCchhhhHHHHHHHHHHHHhhCCEEEE
Q 014946 131 ESKEVIANALKGSDLVFITAGMGGGTGSGAAPVVAQIAKEAGYLTVGVVTYPFSFEGRKRSSQALEAIERLQKNVDTLIV 210 (415)
Q Consensus 131 e~~e~I~~~le~~D~~~I~agLGGGTGSG~apvia~~ake~g~~tvavvtlP~~~Eg~~r~~nA~~~l~~L~e~~D~viv 210 (415)
-...+++.....-|+++++.. .|.| --.--.++.+|+.|..++++...|. +. +.++...+|.+|.
T Consensus 98 ~f~~ql~~~~~~gDvli~iS~-SG~s--~~v~~a~~~Ak~~G~~vI~IT~~~~---s~---------l~~l~~~~D~~i~ 162 (196)
T PRK10886 98 VYAKQVRALGHAGDVLLAIST-RGNS--RDIVKAVEAAVTRDMTIVALTGYDG---GE---------LAGLLGPQDVEIR 162 (196)
T ss_pred HHHHHHHHcCCCCCEEEEEeC-CCCC--HHHHHHHHHHHHCCCEEEEEeCCCC---Ch---------hhhccccCCEEEE
Confidence 344566666777788877655 2222 1122257889999999998865543 21 1223334799999
Q ss_pred EeCchh
Q 014946 211 IPNDRL 216 (415)
Q Consensus 211 ~dNd~L 216 (415)
++.+..
T Consensus 163 ip~~~~ 168 (196)
T PRK10886 163 IPSHRS 168 (196)
T ss_pred cCCCch
Confidence 998763
No 57
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=89.67 E-value=1.2 Score=42.86 Aligned_cols=38 Identities=24% Similarity=0.403 Sum_probs=31.5
Q ss_pred eEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHhc
Q 014946 60 KIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQ 99 (415)
Q Consensus 60 ~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~~ 99 (415)
||+|||+||.||.++..|...|+. ++..+|-|.-.+.+
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg--~i~ivD~D~Ve~sN 38 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFG--QIHVIDMDTIDVSN 38 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCC--eEEEEeCCEEcchh
Confidence 689999999999999999999985 46677887665544
No 58
>PTZ00325 malate dehydrogenase; Provisional
Probab=89.65 E-value=2.4 Score=42.85 Aligned_cols=83 Identities=25% Similarity=0.312 Sum_probs=49.1
Q ss_pred ccCCCCCCCeEEEEee-CcchHHHHHHHHHcCCCceEEEEEECCH---H--HHhcCCCCCCeeccccccccCCCCCCchh
Q 014946 51 CSFAPMETAKIKVVGV-GGGGNNAVNRMIGSGLQGVDFYAINTDS---Q--ALLQSAAENPLQIGDLLTRGLGTGGNPLL 124 (415)
Q Consensus 51 ~~~~~~~~~~i~vIGv-GgaG~niv~~l~~~~~~~v~~iainTD~---~--~L~~~~~~~ki~ig~~~t~G~GaG~n~~~ 124 (415)
+|..+|. ||.|||. |..|..++..|...++. .+.+.+|-+. + +|.+.... ..+. +.+ |+
T Consensus 3 ~~~~~~~--KI~IiGaaG~VGs~~a~~l~~~~~~-~elvL~Di~~~~g~a~Dl~~~~~~--~~v~-----~~t---d~-- 67 (321)
T PTZ00325 3 PSALKMF--KVAVLGAAGGIGQPLSLLLKQNPHV-SELSLYDIVGAPGVAADLSHIDTP--AKVT-----GYA---DG-- 67 (321)
T ss_pred CcCCCCC--EEEEECCCCHHHHHHHHHHhcCCCC-CEEEEEecCCCcccccchhhcCcC--ceEE-----Eec---CC--
Confidence 3445554 8999999 99999999888766643 4566666532 1 22222111 1111 000 11
Q ss_pred hHHHHHHHHHHHHHHhcCCCEEEEeccCCCCcc
Q 014946 125 GEQAAEESKEVIANALKGSDLVFITAGMGGGTG 157 (415)
Q Consensus 125 G~~~aee~~e~I~~~le~~D~~~I~agLGGGTG 157 (415)
....+.+++||.|++++|.--..|
T Consensus 68 ---------~~~~~~l~gaDvVVitaG~~~~~~ 91 (321)
T PTZ00325 68 ---------ELWEKALRGADLVLICAGVPRKPG 91 (321)
T ss_pred ---------CchHHHhCCCCEEEECCCCCCCCC
Confidence 112456789999999999865443
No 59
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=89.61 E-value=0.59 Score=44.44 Aligned_cols=43 Identities=12% Similarity=0.268 Sum_probs=31.7
Q ss_pred CCCCeEEEEeeCcchHHHHHHHHHcCCCceE-EEEEE-CCHHHHh
Q 014946 56 METAKIKVVGVGGGGNNAVNRMIGSGLQGVD-FYAIN-TDSQALL 98 (415)
Q Consensus 56 ~~~~~i~vIGvGgaG~niv~~l~~~~~~~v~-~iain-TD~~~L~ 98 (415)
|..+||.|||.|..|..++..+.+.+..+++ .+++| .+.+.++
T Consensus 2 m~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~ 46 (245)
T PRK07634 2 LKKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLD 46 (245)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHH
Confidence 3468999999999999999999888644454 55565 3555554
No 60
>PRK08223 hypothetical protein; Validated
Probab=89.57 E-value=1.1 Score=44.50 Aligned_cols=42 Identities=19% Similarity=0.343 Sum_probs=35.7
Q ss_pred CCCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHhcC
Q 014946 57 ETAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQS 100 (415)
Q Consensus 57 ~~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~ 100 (415)
.+.+|+|||+||-|+.++..|...|+. ++..+|-|.-.+.++
T Consensus 26 ~~s~VlIvG~GGLGs~va~~LA~aGVG--~i~lvD~D~Ve~SNL 67 (287)
T PRK08223 26 RNSRVAIAGLGGVGGIHLLTLARLGIG--KFTIADFDVFELRNF 67 (287)
T ss_pred hcCCEEEECCCHHHHHHHHHHHHhCCC--eEEEEeCCCcchhcc
Confidence 478899999999999999999999986 567888887766554
No 61
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=89.47 E-value=1.2 Score=38.97 Aligned_cols=42 Identities=14% Similarity=0.356 Sum_probs=33.5
Q ss_pred CCCCCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHh
Q 014946 55 PMETAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALL 98 (415)
Q Consensus 55 ~~~~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~ 98 (415)
.....+++|||.||+|..++.+|...|.. +...+|=+.+..+
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~--~i~i~nRt~~ra~ 50 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAALGAK--EITIVNRTPERAE 50 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHHTTSS--EEEEEESSHHHHH
T ss_pred CcCCCEEEEECCHHHHHHHHHHHHHcCCC--EEEEEECCHHHHH
Confidence 45678999999999999999999999876 3456776655443
No 62
>KOG2015 consensus NEDD8-activating complex, catalytic component UBA3 [Posttranslational modification, protein turnover, chaperones]
Probab=89.39 E-value=0.87 Score=45.89 Aligned_cols=42 Identities=29% Similarity=0.458 Sum_probs=34.5
Q ss_pred CCCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEEC-CHHHHh
Q 014946 57 ETAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINT-DSQALL 98 (415)
Q Consensus 57 ~~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainT-D~~~L~ 98 (415)
..-||+|||.||-||-+...|.-.|+..+..+-+|| |...|+
T Consensus 39 ~~~kiLviGAGGLGCElLKnLal~gF~~~~viDmDTId~sNLN 81 (422)
T KOG2015|consen 39 QDCKILVIGAGGLGCELLKNLALSGFRQLHVIDMDTIDLSNLN 81 (422)
T ss_pred hhCcEEEEccCcccHHHHHhHHhhccceeEEEeecceecccch
Confidence 357999999999999999999999988777777776 555554
No 63
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=89.22 E-value=4.6 Score=42.70 Aligned_cols=39 Identities=18% Similarity=0.274 Sum_probs=29.5
Q ss_pred CCeEEEEee-CcchHHHHHHHHHc-------CCCceEEEEEECCHHHH
Q 014946 58 TAKIKVVGV-GGGGNNAVNRMIGS-------GLQGVDFYAINTDSQAL 97 (415)
Q Consensus 58 ~~~i~vIGv-GgaG~niv~~l~~~-------~~~~v~~iainTD~~~L 97 (415)
..||.|||. |..|..++-.|... ++. .+.+.+|-+.+.+
T Consensus 100 ~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~-~eLvliD~~~~~a 146 (444)
T PLN00112 100 LINVAVSGAAGMISNHLLFKLASGEVFGPDQPIA-LKLLGSERSKQAL 146 (444)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhcccccCCCCcc-cEEEEEcCCcchh
Confidence 579999999 99999999998877 332 3677777644433
No 64
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=89.10 E-value=0.9 Score=43.28 Aligned_cols=42 Identities=26% Similarity=0.473 Sum_probs=34.8
Q ss_pred CCCCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHhc
Q 014946 56 METAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQ 99 (415)
Q Consensus 56 ~~~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~~ 99 (415)
..+.+|.|||+||-|+.++..|...|+. ++..+|-|.-...+
T Consensus 19 L~~~~VlivG~GglGs~va~~La~~Gvg--~i~lvD~D~ve~sN 60 (228)
T cd00757 19 LKNARVLVVGAGGLGSPAAEYLAAAGVG--KLGLVDDDVVELSN 60 (228)
T ss_pred HhCCcEEEECCCHHHHHHHHHHHHcCCC--EEEEEcCCEEcCcc
Confidence 3577899999999999999999999975 67788888655544
No 65
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=88.98 E-value=1 Score=43.60 Aligned_cols=42 Identities=26% Similarity=0.484 Sum_probs=35.0
Q ss_pred CCCCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHhc
Q 014946 56 METAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQ 99 (415)
Q Consensus 56 ~~~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~~ 99 (415)
..+.+|+|||+||-|+.++..|...|+. ++..+|.|.-.+.+
T Consensus 30 L~~~~VliiG~GglGs~va~~La~~Gvg--~i~lvD~D~ve~sN 71 (245)
T PRK05690 30 LKAARVLVVGLGGLGCAASQYLAAAGVG--TLTLVDFDTVSLSN 71 (245)
T ss_pred hcCCeEEEECCCHHHHHHHHHHHHcCCC--EEEEEcCCEECcch
Confidence 3578999999999999999999999975 67788888655544
No 66
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=88.66 E-value=0.52 Score=44.24 Aligned_cols=37 Identities=24% Similarity=0.492 Sum_probs=31.7
Q ss_pred CCCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHH
Q 014946 57 ETAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQ 95 (415)
Q Consensus 57 ~~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~ 95 (415)
...+|.|||+|+.|+.++..|.+.|+. +...+|.|.-
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~Gvg--~i~lvD~D~v 56 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARAGIG--KLILVDFDVV 56 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCC--EEEEECCCEE
Confidence 468899999999999999999999874 5678888843
No 67
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=88.58 E-value=4.6 Score=40.59 Aligned_cols=36 Identities=25% Similarity=0.419 Sum_probs=29.6
Q ss_pred CCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCH
Q 014946 58 TAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDS 94 (415)
Q Consensus 58 ~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~ 94 (415)
.+||.|||.|..|..++-.|...++. .+.+.+|.+.
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~-~el~LiD~~~ 38 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLA-DELVLVDVVE 38 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCC-CEEEEEeCCc
Confidence 57999999999999999999888764 5677777633
No 68
>PRK08328 hypothetical protein; Provisional
Probab=88.34 E-value=0.55 Score=45.03 Aligned_cols=42 Identities=29% Similarity=0.462 Sum_probs=34.3
Q ss_pred CCCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHhcC
Q 014946 57 ETAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQS 100 (415)
Q Consensus 57 ~~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~ 100 (415)
.+.+|+|||+||.|+.++..|...|+. ++..+|-|.-.+.++
T Consensus 26 ~~~~VlIiG~GGlGs~ia~~La~~Gvg--~i~lvD~D~ve~sNL 67 (231)
T PRK08328 26 KKAKVAVVGVGGLGSPVAYYLAAAGVG--RILLIDEQTPELSNL 67 (231)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCC--EEEEEcCCccChhhh
Confidence 467899999999999999999999985 456778877655443
No 69
>PLN00106 malate dehydrogenase
Probab=88.32 E-value=3.9 Score=41.34 Aligned_cols=78 Identities=26% Similarity=0.361 Sum_probs=49.4
Q ss_pred CCeEEEEee-CcchHHHHHHHHHcCCCceEEEEEECCH---H--HHhcCCCCCCeeccccccccCCCCCCchhhHHHHHH
Q 014946 58 TAKIKVVGV-GGGGNNAVNRMIGSGLQGVDFYAINTDS---Q--ALLQSAAENPLQIGDLLTRGLGTGGNPLLGEQAAEE 131 (415)
Q Consensus 58 ~~~i~vIGv-GgaG~niv~~l~~~~~~~v~~iainTD~---~--~L~~~~~~~ki~ig~~~t~G~GaG~n~~~G~~~aee 131 (415)
..||.|||. |..|..++..|..+++. -+.+.+|-+. + +|.+.....++. +. .
T Consensus 18 ~~KV~IiGaaG~VG~~~a~~l~~~~~~-~el~L~Di~~~~g~a~Dl~~~~~~~~i~-------~~--~------------ 75 (323)
T PLN00106 18 GFKVAVLGAAGGIGQPLSLLMKMNPLV-SELHLYDIANTPGVAADVSHINTPAQVR-------GF--L------------ 75 (323)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCC-CEEEEEecCCCCeeEchhhhCCcCceEE-------EE--e------------
Confidence 359999999 99999999999877753 3566666543 1 122221111111 00 0
Q ss_pred HHHHHHHHhcCCCEEEEeccCCCCcc
Q 014946 132 SKEVIANALKGSDLVFITAGMGGGTG 157 (415)
Q Consensus 132 ~~e~I~~~le~~D~~~I~agLGGGTG 157 (415)
.-+++...++++|.|++++|.....|
T Consensus 76 ~~~d~~~~l~~aDiVVitAG~~~~~g 101 (323)
T PLN00106 76 GDDQLGDALKGADLVIIPAGVPRKPG 101 (323)
T ss_pred CCCCHHHHcCCCCEEEEeCCCCCCCC
Confidence 01224567889999999999987655
No 70
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=87.94 E-value=1.1 Score=49.28 Aligned_cols=44 Identities=18% Similarity=0.318 Sum_probs=36.0
Q ss_pred CCCCCCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHhc
Q 014946 54 APMETAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQ 99 (415)
Q Consensus 54 ~~~~~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~~ 99 (415)
....+.|++|||+||-||.++..|.+.|+. +...||-|.-.+.+
T Consensus 334 ekL~~~kVLIvGaGGLGs~VA~~La~~GVg--~ItlVD~D~Ve~SN 377 (664)
T TIGR01381 334 ERYSQLKVLLLGAGTLGCNVARCLIGWGVR--HITFVDNGKVSYSN 377 (664)
T ss_pred HHHhcCeEEEECCcHHHHHHHHHHHHcCCC--eEEEEcCCEECCCc
Confidence 445688999999999999999999999986 56678887665544
No 71
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=87.88 E-value=1.2 Score=48.48 Aligned_cols=85 Identities=21% Similarity=0.168 Sum_probs=50.1
Q ss_pred CCCCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHhcCCCCCCeecccccc--ccCCCCCCchhhHHHHHHHH
Q 014946 56 METAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSAAENPLQIGDLLT--RGLGTGGNPLLGEQAAEESK 133 (415)
Q Consensus 56 ~~~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~~~~~ki~ig~~~t--~G~GaG~n~~~G~~~aee~~ 133 (415)
.+..||+|+|.|+.|.++|-.|.+.|+.++ .+++||.. +.+. +| ||+..- +-.+.+-+.+.-. ..+-
T Consensus 127 qR~akVlVlG~Gg~~s~lv~sL~~sG~~~I--~~vd~D~v-~SNl---nR--IgEl~e~A~~~n~~v~v~~i~---~~~~ 195 (637)
T TIGR03693 127 SRNAKILAAGSGDFLTKLVRSLIDSGFPRF--HAIVTDAE-EHAL---DR--IHELAEIAEETDDALLVQEID---FAED 195 (637)
T ss_pred hhcccEEEEecCchHHHHHHHHHhcCCCcE--EEEecccc-chhh---hH--HHHHHHHHHHhCCCCceEecc---CCcc
Confidence 367899999999999999999999998744 46666654 2211 11 232100 0011111110000 1234
Q ss_pred HHHHHHhcCCCEEEEecc
Q 014946 134 EVIANALKGSDLVFITAG 151 (415)
Q Consensus 134 e~I~~~le~~D~~~I~ag 151 (415)
+.+...+++.|.|+.++.
T Consensus 196 ~dl~ev~~~~DiVi~vsD 213 (637)
T TIGR03693 196 QHLHEAFEPADWVLYVSD 213 (637)
T ss_pred hhHHHhhcCCcEEEEECC
Confidence 567778888998887754
No 72
>PTZ00117 malate dehydrogenase; Provisional
Probab=87.66 E-value=4.9 Score=40.40 Aligned_cols=36 Identities=19% Similarity=0.272 Sum_probs=29.3
Q ss_pred CCCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCH
Q 014946 57 ETAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDS 94 (415)
Q Consensus 57 ~~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~ 94 (415)
.++||.|||.|..|..+...+...++ .+.+.+|.|.
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~~--~~l~L~Di~~ 39 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKNL--GDVVLYDVIK 39 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCC--CeEEEEECCC
Confidence 56899999999999999988888886 3466777755
No 73
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=87.51 E-value=1.3 Score=43.44 Aligned_cols=37 Identities=16% Similarity=0.345 Sum_probs=29.9
Q ss_pred CCCCeEEEEeeCcchHHHHHHHHHcC-CCceEEEEEEC
Q 014946 56 METAKIKVVGVGGGGNNAVNRMIGSG-LQGVDFYAINT 92 (415)
Q Consensus 56 ~~~~~i~vIGvGgaG~niv~~l~~~~-~~~v~~iainT 92 (415)
|+.|||.+||.|.-|..++..|.+.+ ....+.+++|-
T Consensus 1 ~~~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r 38 (279)
T PRK07679 1 MSIQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNR 38 (279)
T ss_pred CCCCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECC
Confidence 56789999999999999999999887 33345666664
No 74
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=87.39 E-value=2.9 Score=42.06 Aligned_cols=37 Identities=19% Similarity=0.417 Sum_probs=29.6
Q ss_pred CCCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCH
Q 014946 57 ETAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDS 94 (415)
Q Consensus 57 ~~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~ 94 (415)
..+||.|||.|+.|+.++-.+...++. -+.+.+|.+.
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~-~el~L~D~~~ 41 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIA-DELVIIDINK 41 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCC-CEEEEEeCCC
Confidence 457999999999999999998888763 3567777643
No 75
>PLN02602 lactate dehydrogenase
Probab=87.32 E-value=2.3 Score=43.52 Aligned_cols=35 Identities=23% Similarity=0.439 Sum_probs=28.9
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCH
Q 014946 59 AKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDS 94 (415)
Q Consensus 59 ~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~ 94 (415)
.||.|||.|..|..++-.|...++. .+.+.+|.+.
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~-~el~LiDi~~ 72 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLA-DELALVDVNP 72 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCC-CEEEEEeCCC
Confidence 7999999999999999999888764 4677777643
No 76
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=87.23 E-value=6.7 Score=39.33 Aligned_cols=33 Identities=27% Similarity=0.484 Sum_probs=27.2
Q ss_pred eEEEEeeCcchHHHHHHHHHcCCCceEEEEEECC
Q 014946 60 KIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTD 93 (415)
Q Consensus 60 ~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD 93 (415)
||.|||.|..|..++-.|...++. -+.+.+|.+
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~-~elvL~Di~ 33 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLF-SEIVLIDVN 33 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCC-CEEEEEeCC
Confidence 799999999999999999888864 356777763
No 77
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=86.91 E-value=1.8 Score=39.56 Aligned_cols=37 Identities=24% Similarity=0.384 Sum_probs=30.8
Q ss_pred eEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHh
Q 014946 60 KIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALL 98 (415)
Q Consensus 60 ~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~ 98 (415)
||.|||+||.|+.++..|.+.|+. ++..+|-|.-...
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg--~i~lvD~D~v~~s 37 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVG--NLKLVDFDVVEPS 37 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCC--eEEEEeCCEEcCc
Confidence 589999999999999999999875 5678888874443
No 78
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=86.64 E-value=1.6 Score=43.49 Aligned_cols=71 Identities=21% Similarity=0.397 Sum_probs=47.4
Q ss_pred eEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHhcCCCCCCeeccccccccCCCCCCchhhHHHHHHHHHHHHHH
Q 014946 60 KIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSAAENPLQIGDLLTRGLGTGGNPLLGEQAAEESKEVIANA 139 (415)
Q Consensus 60 ~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~~~~~ki~ig~~~t~G~GaG~n~~~G~~~aee~~e~I~~~ 139 (415)
||+|||+||-||-++..|...|+. ++..+|-|.-.+.++ .+.+++.+ -.+|+.-++...+.+++.
T Consensus 1 kVlVVGaGGlG~eilknLal~Gvg--~I~IvD~D~Ve~SNL--nRQfLf~~-----------~dIGk~KAevaa~~l~~~ 65 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGFR--NIHVIDMDTIDVSNL--NRQFLFRE-----------KDIGKPKAEVAAKFVNDR 65 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCC--eEEEECCCEeccccc--CcCcccCh-----------HHcchHHHHHHHHHHHHH
Confidence 689999999999999999999986 566788877665543 23334432 234554555555666655
Q ss_pred hcCCCE
Q 014946 140 LKGSDL 145 (415)
Q Consensus 140 le~~D~ 145 (415)
-.++..
T Consensus 66 np~v~I 71 (291)
T cd01488 66 VPGVNV 71 (291)
T ss_pred CCCCEE
Confidence 544443
No 79
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=86.54 E-value=4.9 Score=41.29 Aligned_cols=43 Identities=19% Similarity=0.322 Sum_probs=34.5
Q ss_pred CCCCCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHhc
Q 014946 55 PMETAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQ 99 (415)
Q Consensus 55 ~~~~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~~ 99 (415)
.....+|+|||+||.|+.++..|...|+. ++..+|-|.-.+.+
T Consensus 132 ~l~~~~VlvvG~GG~Gs~ia~~La~~Gvg--~i~lvD~d~v~~sN 174 (376)
T PRK08762 132 RLLEARVLLIGAGGLGSPAALYLAAAGVG--TLGIVDHDVVDRSN 174 (376)
T ss_pred HHhcCcEEEECCCHHHHHHHHHHHHcCCC--eEEEEeCCEecchh
Confidence 34578899999999999999999999975 56678887554433
No 80
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=86.25 E-value=28 Score=32.29 Aligned_cols=116 Identities=16% Similarity=0.170 Sum_probs=65.7
Q ss_pred CCCeEEEEeeCcchHHHHHH---HH-HcC--CCceEEEEEECCHHHHhcCCCCCCeeccccccccCCCCCCchhhHHHHH
Q 014946 57 ETAKIKVVGVGGGGNNAVNR---MI-GSG--LQGVDFYAINTDSQALLQSAAENPLQIGDLLTRGLGTGGNPLLGEQAAE 130 (415)
Q Consensus 57 ~~~~i~vIGvGgaG~niv~~---l~-~~~--~~~v~~iainTD~~~L~~~~~~~ki~ig~~~t~G~GaG~n~~~G~~~ae 130 (415)
+..+|-++|+|+.+..+.+. |. +.+ ..+..+++. +|...+... +++... .+
T Consensus 43 ~~~rI~i~G~G~S~~~A~~~a~~l~~~~~~~r~g~~~~~~-~d~~~~~~~------------------~~d~~~----~~ 99 (192)
T PRK00414 43 AGGKVLSCGNGGSHCDAMHFAEELTGRYRENRPGYPAIAI-SDVSHLSCV------------------SNDFGY----DY 99 (192)
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHhcccccCCCCCceEEec-CcHHHHhhh------------------hccCCH----HH
Confidence 35789999999988754332 21 122 233444444 465544221 112211 11
Q ss_pred HHHHHHHHHhcCCCEEEEeccCCCCccCChHHHHHHHHHHhCCceEEEEecCCCCchhhhHHHHHHHHHHHHhhCCEEEE
Q 014946 131 ESKEVIANALKGSDLVFITAGMGGGTGSGAAPVVAQIAKEAGYLTVGVVTYPFSFEGRKRSSQALEAIERLQKNVDTLIV 210 (415)
Q Consensus 131 e~~e~I~~~le~~D~~~I~agLGGGTGSG~apvia~~ake~g~~tvavvtlP~~~Eg~~r~~nA~~~l~~L~e~~D~viv 210 (415)
.....+...+..-|+++++.. .|-| .-.--+++.+|+.|..++++...+. + .|.+.+|.+|.
T Consensus 100 ~~~~~~~~~~~~~Dv~I~iS~-SG~t--~~~i~~~~~ak~~g~~iI~iT~~~~---s------------~l~~~ad~~l~ 161 (192)
T PRK00414 100 VFSRYVEAVGREGDVLLGIST-SGNS--GNIIKAIEAARAKGMKVITLTGKDG---G------------KMAGLADIEIR 161 (192)
T ss_pred HHHHHHHHhCCCCCEEEEEeC-CCCC--HHHHHHHHHHHHCCCeEEEEeCCCC---C------------hhHHhCCEEEE
Confidence 223334445566777777644 2222 1222367888999999998865543 1 36678999999
Q ss_pred EeC
Q 014946 211 IPN 213 (415)
Q Consensus 211 ~dN 213 (415)
++.
T Consensus 162 ~~~ 164 (192)
T PRK00414 162 VPH 164 (192)
T ss_pred eCC
Confidence 988
No 81
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=86.22 E-value=1.8 Score=40.42 Aligned_cols=41 Identities=17% Similarity=0.354 Sum_probs=34.2
Q ss_pred CCCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHhc
Q 014946 57 ETAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQ 99 (415)
Q Consensus 57 ~~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~~ 99 (415)
.+.+|+|||+||-|+.++..|...|+. .+..+|.|.-...+
T Consensus 20 ~~s~VlIiG~gglG~evak~La~~GVg--~i~lvD~d~ve~sn 60 (197)
T cd01492 20 RSARILLIGLKGLGAEIAKNLVLSGIG--SLTILDDRTVTEED 60 (197)
T ss_pred HhCcEEEEcCCHHHHHHHHHHHHcCCC--EEEEEECCcccHhh
Confidence 467899999999999999999999975 56788888655544
No 82
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=86.10 E-value=3.3 Score=40.22 Aligned_cols=82 Identities=23% Similarity=0.317 Sum_probs=50.3
Q ss_pred EEEEee-CcchHHHHHHHHHcCC-CceEEEEEECCHHHHhcCCCCCC----eeccccccccCCCCCCchhhHHHHHHHHH
Q 014946 61 IKVVGV-GGGGNNAVNRMIGSGL-QGVDFYAINTDSQALLQSAAENP----LQIGDLLTRGLGTGGNPLLGEQAAEESKE 134 (415)
Q Consensus 61 i~vIGv-GgaG~niv~~l~~~~~-~~v~~iainTD~~~L~~~~~~~k----i~ig~~~t~G~GaG~n~~~G~~~aee~~e 134 (415)
|.|||. |..|..++..+...+. ...+.+.+|.|...|+....+-+ ......++ .-+
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~------------------~~~ 62 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVS------------------ITD 62 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEE------------------ECC
Confidence 579999 8889999998887772 23578888987755433110000 00000000 011
Q ss_pred HHHHHhcCCCEEEEeccCCCCccCCh
Q 014946 135 VIANALKGSDLVFITAGMGGGTGSGA 160 (415)
Q Consensus 135 ~I~~~le~~D~~~I~agLGGGTGSG~ 160 (415)
...+.+++||.|+++++-++..|-+-
T Consensus 63 d~~~~~~~aDiVv~t~~~~~~~g~~r 88 (263)
T cd00650 63 DPYEAFKDADVVIITAGVGRKPGMGR 88 (263)
T ss_pred chHHHhCCCCEEEECCCCCCCcCCCH
Confidence 12456789999999999988876543
No 83
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=85.91 E-value=1.4 Score=44.98 Aligned_cols=42 Identities=31% Similarity=0.472 Sum_probs=34.8
Q ss_pred CCCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHhcC
Q 014946 57 ETAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQS 100 (415)
Q Consensus 57 ~~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~ 100 (415)
.+.+|+|||+||.|+.++..|...|+. ++..+|.|.-.+.++
T Consensus 27 ~~~~VlivG~GGlGs~~a~~La~~Gvg--~i~lvD~D~ve~sNL 68 (355)
T PRK05597 27 FDAKVAVIGAGGLGSPALLYLAGAGVG--HITIIDDDTVDLSNL 68 (355)
T ss_pred hCCeEEEECCCHHHHHHHHHHHHcCCC--eEEEEeCCEEccccc
Confidence 468899999999999999999999986 567888887555443
No 84
>PLN02688 pyrroline-5-carboxylate reductase
Probab=85.36 E-value=2.2 Score=41.19 Aligned_cols=40 Identities=10% Similarity=0.219 Sum_probs=32.0
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCC-CceEEEEE-ECCHHHHh
Q 014946 59 AKIKVVGVGGGGNNAVNRMIGSGL-QGVDFYAI-NTDSQALL 98 (415)
Q Consensus 59 ~~i~vIGvGgaG~niv~~l~~~~~-~~v~~iai-nTD~~~L~ 98 (415)
|||.+||.|.-|..++..|.+.+. ...+.+++ |.+....+
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~ 42 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRD 42 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHH
Confidence 689999999999999999998874 33466777 77666554
No 85
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=85.34 E-value=1.5 Score=43.57 Aligned_cols=32 Identities=19% Similarity=0.384 Sum_probs=26.8
Q ss_pred CCCCeEEEEeeCcchHHHHHHHHHcCCCceEEE
Q 014946 56 METAKIKVVGVGGGGNNAVNRMIGSGLQGVDFY 88 (415)
Q Consensus 56 ~~~~~i~vIGvGgaG~niv~~l~~~~~~~v~~i 88 (415)
+++|||.|||.|..|..++..|.+.|.+ |..|
T Consensus 2 ~~~m~I~iiG~G~~G~~lA~~l~~~G~~-V~~~ 33 (308)
T PRK14619 2 TQPKTIAILGAGAWGSTLAGLASANGHR-VRVW 33 (308)
T ss_pred CCCCEEEEECccHHHHHHHHHHHHCCCE-EEEE
Confidence 4679999999999999999999998853 5433
No 86
>KOG2530 consensus Members of tubulin/FtsZ family [Cytoskeleton]
Probab=85.31 E-value=2.4 Score=44.38 Aligned_cols=127 Identities=17% Similarity=0.172 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHhcCCC---EEEEeccCCCCccCChHHH-HHHHHHHhC---CceEEEEecCCCC-chhhh------HHHH
Q 014946 129 AEESKEVIANALKGSD---LVFITAGMGGGTGSGAAPV-VAQIAKEAG---YLTVGVVTYPFSF-EGRKR------SSQA 194 (415)
Q Consensus 129 aee~~e~I~~~le~~D---~~~I~agLGGGTGSG~apv-ia~~ake~g---~~tvavvtlP~~~-Eg~~r------~~nA 194 (415)
-+|..|++|-.+|.|| +|.+..-+-+|-| |+|.- +..+..||+ +++.+..+-|+.. +..++ ..|-
T Consensus 187 ~eE~~DrLr~~VEECD~lQGFq~l~Did~Gfg-G~as~~le~l~DEys~~~v~tw~~~~~p~s~~~s~k~ls~~~~~lN~ 265 (483)
T KOG2530|consen 187 QEEFCDRLRFYVEECDTLQGFQLLSDIDDGFG-GFASKLLEELQDEYSKKAVFTWGHNPRPFSQDFSMKRLSNKWLKLNK 265 (483)
T ss_pred hHHHHHHHHHHHHhcccccceEEEEecCCCch-hHHHHHHHHHHHhhcCCceeccccCCCCCCcchhhhhhHHHHHHHHH
Confidence 4667888999999999 7899999999986 55544 445556665 4567777777754 33333 4567
Q ss_pred HHHHHHHHhhCCEEEEEeCchhhhhccccCChHHHHhhhhhhhhccccccccccccCceeeechhhhhhhcc
Q 014946 195 LEAIERLQKNVDTLIVIPNDRLLDITDEQTALQDAFLLADDVLRQGVQGISDIITIPGLVNVDFADVKAVMK 266 (415)
Q Consensus 195 ~~~l~~L~e~~D~viv~dNd~L~~~~~~~~~i~~af~~~N~~i~~~i~~It~~i~~~G~invD~~di~t~L~ 266 (415)
+.++.+|.++++..+.+.--... ...|.. -.+++.++.+++-..+.-+..|+-+.|..+-|.
T Consensus 266 als~~qLs~~~~l~~PL~~~~~~---------~~~~~t-sA~~a~~~ds~tlptr~~ssS~~~~~d~ls~l~ 327 (483)
T KOG2530|consen 266 ALSLSQLSQECSLYFPLSTASGL---------GDLWET-SAKLARAFDSITLPTRLISSSNLRQRDTLSYLG 327 (483)
T ss_pred HHHHHHHhhhcceeecccccccc---------ccHHHH-HHHHHhhcccccccceecchhHHHHHHHHHHHH
Confidence 88999999999988876432211 122322 233444555555444444555666656555444
No 87
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=85.20 E-value=6.5 Score=39.56 Aligned_cols=76 Identities=28% Similarity=0.411 Sum_probs=47.2
Q ss_pred eEEEEee-CcchHHHHHHHHHcCCCceEEEEEECCH-----HHHhcCCCCCCeeccccccccCCCCCCchhhHHHHHHHH
Q 014946 60 KIKVVGV-GGGGNNAVNRMIGSGLQGVDFYAINTDS-----QALLQSAAENPLQIGDLLTRGLGTGGNPLLGEQAAEESK 133 (415)
Q Consensus 60 ~i~vIGv-GgaG~niv~~l~~~~~~~v~~iainTD~-----~~L~~~~~~~ki~ig~~~t~G~GaG~n~~~G~~~aee~~ 133 (415)
||.|||. |.-|..++-.|...++. .+.+.+|-+. .+|.+.....++. +. .+.
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~-~elvL~Di~~a~g~a~DL~~~~~~~~i~-------~~-~~~------------- 58 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYV-SELSLYDIAGAAGVAADLSHIPTAASVK-------GF-SGE------------- 58 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCC-cEEEEecCCCCcEEEchhhcCCcCceEE-------Ee-cCC-------------
Confidence 7999999 99999999988777653 4677777643 1122211101111 00 000
Q ss_pred HHHHHHhcCCCEEEEeccCCCCcc
Q 014946 134 EVIANALKGSDLVFITAGMGGGTG 157 (415)
Q Consensus 134 e~I~~~le~~D~~~I~agLGGGTG 157 (415)
+...+.++++|.+++++|..-..|
T Consensus 59 ~~~~~~~~daDivvitaG~~~~~g 82 (312)
T TIGR01772 59 EGLENALKGADVVVIPAGVPRKPG 82 (312)
T ss_pred CchHHHcCCCCEEEEeCCCCCCCC
Confidence 112456789999999999976654
No 88
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=85.19 E-value=0.89 Score=44.19 Aligned_cols=45 Identities=16% Similarity=0.295 Sum_probs=35.6
Q ss_pred CCCCeEEEEeeCcchHHHHHHHHHcCC-------C-ceEEEEEECCHHHHhcC
Q 014946 56 METAKIKVVGVGGGGNNAVNRMIGSGL-------Q-GVDFYAINTDSQALLQS 100 (415)
Q Consensus 56 ~~~~~i~vIGvGgaG~niv~~l~~~~~-------~-~v~~iainTD~~~L~~~ 100 (415)
....+|.|||+||-||.++..|.+.|+ . +.+...+|-|.-...++
T Consensus 9 ~~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve~sNL 61 (244)
T TIGR03736 9 SRPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEANV 61 (244)
T ss_pred hCCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEccchh
Confidence 357899999999999999999998752 1 34788899887665554
No 89
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=85.10 E-value=41 Score=34.62 Aligned_cols=39 Identities=21% Similarity=0.315 Sum_probs=28.9
Q ss_pred CCCCCCCeEEEEee-CcchHHHHHHHHHcCCCceEEEEEECCH
Q 014946 53 FAPMETAKIKVVGV-GGGGNNAVNRMIGSGLQGVDFYAINTDS 94 (415)
Q Consensus 53 ~~~~~~~~i~vIGv-GgaG~niv~~l~~~~~~~v~~iainTD~ 94 (415)
-++...++|+|+|- |..|..++..|++.|. +.+++.-+.
T Consensus 55 ~~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~---~V~~l~R~~ 94 (390)
T PLN02657 55 SKEPKDVTVLVVGATGYIGKFVVRELVRRGY---NVVAVAREK 94 (390)
T ss_pred ccCCCCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEEech
Confidence 34566789999997 7889999999999874 344444333
No 90
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=85.02 E-value=2.2 Score=42.33 Aligned_cols=38 Identities=26% Similarity=0.468 Sum_probs=31.1
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHhc
Q 014946 59 AKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQ 99 (415)
Q Consensus 59 ~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~~ 99 (415)
|+|.|||+|-.|.+++..|.+.|. +..+.|-+.+..+.
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g~---~V~~~dr~~~~~~~ 38 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRGH---DCVGYDHDQDAVKA 38 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCCC---EEEEEECCHHHHHH
Confidence 589999999999999999999874 34567888776554
No 91
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=84.98 E-value=1.9 Score=41.69 Aligned_cols=41 Identities=17% Similarity=0.310 Sum_probs=32.1
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHhc
Q 014946 59 AKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQ 99 (415)
Q Consensus 59 ~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~~ 99 (415)
|+|.|||.|.-|..++..|.+.+....+.+.+|-+.+.++.
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~ 43 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAA 43 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHH
Confidence 68999999999999999999887433456677777665543
No 92
>PRK07411 hypothetical protein; Validated
Probab=84.93 E-value=2.5 Score=43.82 Aligned_cols=43 Identities=16% Similarity=0.283 Sum_probs=36.0
Q ss_pred CCCCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHhcC
Q 014946 56 METAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQS 100 (415)
Q Consensus 56 ~~~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~ 100 (415)
....+|+|||+||-|+.++..|...|+. ++..+|-|.-.+.++
T Consensus 36 L~~~~VlivG~GGlG~~va~~La~~Gvg--~l~lvD~D~ve~sNL 78 (390)
T PRK07411 36 LKAASVLCIGTGGLGSPLLLYLAAAGIG--RIGIVDFDVVDSSNL 78 (390)
T ss_pred HhcCcEEEECCCHHHHHHHHHHHHcCCC--EEEEECCCEeccccc
Confidence 3478899999999999999999999986 567888887666554
No 93
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=84.77 E-value=3.4 Score=41.58 Aligned_cols=39 Identities=28% Similarity=0.467 Sum_probs=32.0
Q ss_pred eEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHhcC
Q 014946 60 KIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQS 100 (415)
Q Consensus 60 ~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~ 100 (415)
||+|||+||-||.++..|...|+. +...+|-|.-.+.++
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gvg--~ItIvD~D~Ve~sNL 39 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGFG--EIHIIDLDTIDLSNL 39 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcCC--eEEEEcCCCcchhhc
Confidence 689999999999999999999985 456778777665543
No 94
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=84.75 E-value=2.9 Score=44.50 Aligned_cols=43 Identities=12% Similarity=0.135 Sum_probs=36.6
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHhcCCC
Q 014946 59 AKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSAA 102 (415)
Q Consensus 59 ~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~~~ 102 (415)
|||.|||.|-.|.-.+-.|.+.|. +++.+.+|.|...++.+..
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~-g~~V~gvD~~~~~v~~l~~ 44 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCP-DIEVVVVDISVPRIDAWNS 44 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCC-CCeEEEEECCHHHHHHHHc
Confidence 789999999999999999988763 4778899999998877543
No 95
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=84.47 E-value=9.1 Score=38.70 Aligned_cols=36 Identities=22% Similarity=0.367 Sum_probs=29.6
Q ss_pred CCCeEEEEee-CcchHHHHHHHHHcCCCc----eEEEEEEC
Q 014946 57 ETAKIKVVGV-GGGGNNAVNRMIGSGLQG----VDFYAINT 92 (415)
Q Consensus 57 ~~~~i~vIGv-GgaG~niv~~l~~~~~~~----v~~iainT 92 (415)
+..||.|||. |..|..++-.|...++.+ .+.+.+|.
T Consensus 2 ~p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di 42 (323)
T TIGR01759 2 KPVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDI 42 (323)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEec
Confidence 4689999999 999999999998887643 26777777
No 96
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=84.41 E-value=2.7 Score=43.56 Aligned_cols=43 Identities=19% Similarity=0.330 Sum_probs=35.5
Q ss_pred CCCCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHhcC
Q 014946 56 METAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQS 100 (415)
Q Consensus 56 ~~~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~ 100 (415)
..+.+|+|||+||.|+.++..|...|+. +...+|-|.-.+.++
T Consensus 40 L~~~~VlviG~GGlGs~va~~La~~Gvg--~i~lvD~D~ve~sNL 82 (392)
T PRK07878 40 LKNARVLVIGAGGLGSPTLLYLAAAGVG--TLGIVEFDVVDESNL 82 (392)
T ss_pred HhcCCEEEECCCHHHHHHHHHHHHcCCC--eEEEECCCEecCccc
Confidence 3578999999999999999999999975 567888877655543
No 97
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=84.21 E-value=3.6 Score=35.93 Aligned_cols=42 Identities=14% Similarity=0.311 Sum_probs=32.1
Q ss_pred CCCCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHhc
Q 014946 56 METAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQ 99 (415)
Q Consensus 56 ~~~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~~ 99 (415)
....++.|||.|+.|..++..|.+.+ ..+...+|.+.+....
T Consensus 17 ~~~~~i~iiG~G~~g~~~a~~l~~~g--~~~v~v~~r~~~~~~~ 58 (155)
T cd01065 17 LKGKKVLILGAGGAARAVAYALAELG--AAKIVIVNRTLEKAKA 58 (155)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCC--CCEEEEEcCCHHHHHH
Confidence 34678999999999999999998876 2356667777665543
No 98
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=84.13 E-value=3.8 Score=41.19 Aligned_cols=77 Identities=27% Similarity=0.351 Sum_probs=47.6
Q ss_pred CeEEEEee-CcchHHHHHHHHHcCCCceEEEEEECC-----HHHHhcCCCCCCeeccccccccCCCCCCchhhHHHHHHH
Q 014946 59 AKIKVVGV-GGGGNNAVNRMIGSGLQGVDFYAINTD-----SQALLQSAAENPLQIGDLLTRGLGTGGNPLLGEQAAEES 132 (415)
Q Consensus 59 ~~i~vIGv-GgaG~niv~~l~~~~~~~v~~iainTD-----~~~L~~~~~~~ki~ig~~~t~G~GaG~n~~~G~~~aee~ 132 (415)
|||.|||. |..|..++-.|...++. .+.+.+|-+ ..+|.+.....++. ++.+
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~-~elvLiDi~~a~g~alDL~~~~~~~~i~---------~~~~------------ 58 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLV-SELALYDIVNTPGVAADLSHINTPAKVT---------GYLG------------ 58 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCC-cEEEEEecCccceeehHhHhCCCcceEE---------EecC------------
Confidence 69999999 99999999888877763 467777665 11122221101111 0000
Q ss_pred HHHHHHHhcCCCEEEEeccCCCCcc
Q 014946 133 KEVIANALKGSDLVFITAGMGGGTG 157 (415)
Q Consensus 133 ~e~I~~~le~~D~~~I~agLGGGTG 157 (415)
-+++.+.+++||.++|++|..=..|
T Consensus 59 ~~~~y~~~~daDivvitaG~~~k~g 83 (310)
T cd01337 59 PEELKKALKGADVVVIPAGVPRKPG 83 (310)
T ss_pred CCchHHhcCCCCEEEEeCCCCCCCC
Confidence 0123456789999999999865443
No 99
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=84.12 E-value=4.2 Score=39.69 Aligned_cols=37 Identities=27% Similarity=0.510 Sum_probs=30.8
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHh
Q 014946 59 AKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALL 98 (415)
Q Consensus 59 ~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~ 98 (415)
|+|.+||+|--|.|+|.+++..+. ++++.|-|+.+.+
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~gh---dvV~yD~n~~av~ 37 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGGH---DVVGYDVNQTAVE 37 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCCC---eEEEEcCCHHHHH
Confidence 689999999999999999999875 4777777666544
No 100
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=84.08 E-value=2.1 Score=42.10 Aligned_cols=42 Identities=17% Similarity=0.282 Sum_probs=33.7
Q ss_pred CCeEEEEeeCcchHHHHHHHHHcCC-CceEEEEEECCHHHHhc
Q 014946 58 TAKIKVVGVGGGGNNAVNRMIGSGL-QGVDFYAINTDSQALLQ 99 (415)
Q Consensus 58 ~~~i~vIGvGgaG~niv~~l~~~~~-~~v~~iainTD~~~L~~ 99 (415)
++||.+||.|--|..++..|.+.+. ...+.++.|-+.+.++.
T Consensus 2 ~~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~ 44 (272)
T PRK12491 2 NKQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKN 44 (272)
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHH
Confidence 3589999999999999999998884 34467788877776654
No 101
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=83.98 E-value=1.5 Score=42.55 Aligned_cols=39 Identities=18% Similarity=0.335 Sum_probs=29.6
Q ss_pred CCCCeEEEEeeCcchHHHHHHHHHcCC-CceEEEEEECCH
Q 014946 56 METAKIKVVGVGGGGNNAVNRMIGSGL-QGVDFYAINTDS 94 (415)
Q Consensus 56 ~~~~~i~vIGvGgaG~niv~~l~~~~~-~~v~~iainTD~ 94 (415)
|+.|||.+||.|--|+.++..|.+.+. ..-+.++.|-+.
T Consensus 1 ~~~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~ 40 (260)
T PTZ00431 1 MENIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSK 40 (260)
T ss_pred CCCCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCCh
Confidence 567999999999999999999998863 222455555444
No 102
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=83.92 E-value=2.8 Score=43.12 Aligned_cols=44 Identities=23% Similarity=0.435 Sum_probs=35.7
Q ss_pred CCCCCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHhcC
Q 014946 55 PMETAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQS 100 (415)
Q Consensus 55 ~~~~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~ 100 (415)
...+.+|+|||+||.|+.++..|...|+. +...+|-|.-.+.++
T Consensus 38 ~l~~~~VliiG~GglG~~v~~~La~~Gvg--~i~ivD~D~ve~sNL 81 (370)
T PRK05600 38 RLHNARVLVIGAGGLGCPAMQSLASAGVG--TITLIDDDTVDVSNI 81 (370)
T ss_pred HhcCCcEEEECCCHHHHHHHHHHHHcCCC--EEEEEeCCEEccccc
Confidence 34578899999999999999999999975 567888886655443
No 103
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=83.56 E-value=8.3 Score=38.90 Aligned_cols=75 Identities=32% Similarity=0.526 Sum_probs=47.6
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECC-------HHHHhcCCCC--CCeeccccccccCCCCCCchhhHHHH
Q 014946 59 AKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTD-------SQALLQSAAE--NPLQIGDLLTRGLGTGGNPLLGEQAA 129 (415)
Q Consensus 59 ~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD-------~~~L~~~~~~--~ki~ig~~~t~G~GaG~n~~~G~~~a 129 (415)
+||.|||.|+.|...+-.|...++. -+.+.+|-. ..+|.+..+. ....+. +. ++
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~-~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~-------~~-~~-------- 63 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLG-SELVLIDINEEKAEGVALDLSHAAAPLGSDVKIT-------GD-GD-------- 63 (313)
T ss_pred CeEEEECCChHHHHHHHHHhccccc-ceEEEEEcccccccchhcchhhcchhccCceEEe-------cC-CC--------
Confidence 5899999999999999999766654 355555554 2333333221 112221 00 11
Q ss_pred HHHHHHHHHHhcCCCEEEEeccCCCCcc
Q 014946 130 EESKEVIANALKGSDLVFITAGMGGGTG 157 (415)
Q Consensus 130 ee~~e~I~~~le~~D~~~I~agLGGGTG 157 (415)
-+.++++|.++|+||.-=..|
T Consensus 64 -------y~~~~~aDiVvitAG~prKpG 84 (313)
T COG0039 64 -------YEDLKGADIVVITAGVPRKPG 84 (313)
T ss_pred -------hhhhcCCCEEEEeCCCCCCCC
Confidence 235688999999998877766
No 104
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=83.43 E-value=10 Score=37.86 Aligned_cols=36 Identities=19% Similarity=0.388 Sum_probs=28.7
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHH
Q 014946 59 AKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQ 95 (415)
Q Consensus 59 ~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~ 95 (415)
|||.|||.|..|..++-.|...++. .+.+.+|-+..
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~-~ev~l~D~~~~ 36 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLA-SEIVLVDINKA 36 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCC-CEEEEEECCch
Confidence 6899999999999999999888852 35666776543
No 105
>PRK14851 hypothetical protein; Provisional
Probab=83.24 E-value=3 Score=46.44 Aligned_cols=43 Identities=23% Similarity=0.419 Sum_probs=36.2
Q ss_pred CCCCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHhcC
Q 014946 56 METAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQS 100 (415)
Q Consensus 56 ~~~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~ 100 (415)
..+.+|.|||+||.|+.++..|...|+. ++..+|-|.-.+.++
T Consensus 41 L~~~~VlIvG~GGlGs~va~~Lar~GVG--~l~LvD~D~ve~sNL 83 (679)
T PRK14851 41 LAEAKVAIPGMGGVGGVHLITMVRTGIG--RFHIADFDQFEPVNV 83 (679)
T ss_pred HhcCeEEEECcCHHHHHHHHHHHHhCCC--eEEEEcCCEeccccc
Confidence 3578999999999999999999999985 677888887666554
No 106
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=83.19 E-value=16 Score=36.59 Aligned_cols=34 Identities=15% Similarity=0.281 Sum_probs=28.0
Q ss_pred CeEEEEee-CcchHHHHHHHHHcCCCceEEEEEECC
Q 014946 59 AKIKVVGV-GGGGNNAVNRMIGSGLQGVDFYAINTD 93 (415)
Q Consensus 59 ~~i~vIGv-GgaG~niv~~l~~~~~~~v~~iainTD 93 (415)
|||.|||. |..|..++..|...++. -+.+++|-+
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~-~~v~lvd~~ 35 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVV-KEINLISRP 35 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCC-CEEEEEECc
Confidence 68999998 99999999999988864 356677764
No 107
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=83.02 E-value=5.7 Score=38.80 Aligned_cols=37 Identities=27% Similarity=0.373 Sum_probs=31.1
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHh
Q 014946 59 AKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALL 98 (415)
Q Consensus 59 ~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~ 98 (415)
.||.|||.|-.|+.++..+...|. +.+.+|-|.+.++
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~---~V~~~d~~~~~~~ 40 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGY---DVVMVDISDAAVD 40 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCC---ceEEEeCCHHHHH
Confidence 479999999999999999998875 4667788777764
No 108
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=82.99 E-value=6.1 Score=38.88 Aligned_cols=37 Identities=30% Similarity=0.532 Sum_probs=31.9
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHh
Q 014946 59 AKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALL 98 (415)
Q Consensus 59 ~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~ 98 (415)
.||.|||.|.-|..|+..+...|. +.+.+|.+.+.++
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~---~V~~~d~~~~~~~ 41 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGM---DVWLLDSDPAALS 41 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCC---eEEEEeCCHHHHH
Confidence 579999999999999999998874 5778898887775
No 109
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=82.93 E-value=10 Score=38.73 Aligned_cols=93 Identities=23% Similarity=0.248 Sum_probs=59.6
Q ss_pred EEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHhcCCCC---CCeeccccccccCCCCCCchhhHHHHHHHHHHHH
Q 014946 61 IKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSAAE---NPLQIGDLLTRGLGTGGNPLLGEQAAEESKEVIA 137 (415)
Q Consensus 61 i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~~~~---~ki~ig~~~t~G~GaG~n~~~G~~~aee~~e~I~ 137 (415)
|.|+|.|..|.-++..|.++.-. -+.+..+-+...+++.... .++..-. +--.+.+++.
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~-~~v~va~r~~~~~~~~~~~~~~~~~~~~~-----------------~d~~~~~~l~ 62 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPF-EEVTVADRNPEKAERLAEKLLGDRVEAVQ-----------------VDVNDPESLA 62 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE--EEEEEESSHHHHHHHHT--TTTTEEEEE-------------------TTTHHHHH
T ss_pred CEEEcCcHHHHHHHHHHhcCCCC-CcEEEEECCHHHHHHHHhhccccceeEEE-----------------EecCCHHHHH
Confidence 78999999999999999887632 1788889988887654321 1222111 1113456688
Q ss_pred HHhcCCCEEEEeccCCCCccCChHHHHHHHHHHhCCceEE
Q 014946 138 NALKGSDLVFITAGMGGGTGSGAAPVVAQIAKEAGYLTVG 177 (415)
Q Consensus 138 ~~le~~D~~~I~agLGGGTGSG~apvia~~ake~g~~tva 177 (415)
+.++++|.|+-+++-- ..+-+++.+-+.|...+-
T Consensus 63 ~~~~~~dvVin~~gp~------~~~~v~~~~i~~g~~yvD 96 (386)
T PF03435_consen 63 ELLRGCDVVINCAGPF------FGEPVARACIEAGVHYVD 96 (386)
T ss_dssp HHHTTSSEEEE-SSGG------GHHHHHHHHHHHT-EEEE
T ss_pred HHHhcCCEEEECCccc------hhHHHHHHHHHhCCCeec
Confidence 9999999988776532 466688888888776444
No 110
>PRK06545 prephenate dehydrogenase; Validated
Probab=82.84 E-value=1.6 Score=44.47 Aligned_cols=37 Identities=19% Similarity=0.270 Sum_probs=29.4
Q ss_pred eEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHH
Q 014946 60 KIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQAL 97 (415)
Q Consensus 60 ~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L 97 (415)
+|.|||.|--|+.++..|.+.|. .+..+..|-+...+
T Consensus 2 ~I~iIG~GliG~siA~~L~~~G~-~v~i~~~~~~~~~~ 38 (359)
T PRK06545 2 TVLIVGLGLIGGSLALAIKAAGP-DVFIIGYDPSAAQL 38 (359)
T ss_pred eEEEEEeCHHHHHHHHHHHhcCC-CeEEEEeCCCHHHH
Confidence 69999999999999999999885 46666666555444
No 111
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=82.84 E-value=3.1 Score=41.37 Aligned_cols=42 Identities=17% Similarity=0.347 Sum_probs=34.6
Q ss_pred CCCCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHhc
Q 014946 56 METAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQ 99 (415)
Q Consensus 56 ~~~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~~ 99 (415)
+.+.+|+|+|+||.|+-++..|...|+. ....+|.|.-.+..
T Consensus 17 L~~s~VLIvG~gGLG~EiaKnLalaGVg--~itI~D~d~ve~sn 58 (286)
T cd01491 17 LQKSNVLISGLGGLGVEIAKNLILAGVK--SVTLHDTKPCSWSD 58 (286)
T ss_pred HhcCcEEEEcCCHHHHHHHHHHHHcCCC--eEEEEcCCccchhh
Confidence 3478899999999999999999999986 45678887665544
No 112
>PRK13938 phosphoheptose isomerase; Provisional
Probab=82.57 E-value=33 Score=32.12 Aligned_cols=119 Identities=18% Similarity=0.223 Sum_probs=67.2
Q ss_pred CCCeEEEEeeCcchHHHHHHHHHc------CCCceEEEEEECCHHHHhcCCCCCCeeccccccccCCCCCCchhhHHHHH
Q 014946 57 ETAKIKVVGVGGGGNNAVNRMIGS------GLQGVDFYAINTDSQALLQSAAENPLQIGDLLTRGLGTGGNPLLGEQAAE 130 (415)
Q Consensus 57 ~~~~i~vIGvGgaG~niv~~l~~~------~~~~v~~iainTD~~~L~~~~~~~ki~ig~~~t~G~GaG~n~~~G~~~ae 130 (415)
+.-||.++|+|+.|..+-+.-.+. +.+....+++..|...+... ++|. ...+
T Consensus 44 ~g~rI~i~G~G~S~~~A~~fa~~L~~~~~~~r~~lg~~~l~~~~~~~~a~------------------~nd~----~~~~ 101 (196)
T PRK13938 44 AGARVFMCGNGGSAADAQHFAAELTGHLIFDRPPLGAEALHANSSHLTAV------------------ANDY----DYDT 101 (196)
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHcCCCccCCcCccceEEEeCChHHHHHh------------------hccc----cHHH
Confidence 468899999999998865554432 11223445555554433221 0111 0112
Q ss_pred HHHHHHHHHhcCCCEEEEeccCCCCccCChHHHHHHHHHHhCCceEEEEecCCCCchhhhHHHHHHHHHHHHhhCCEEEE
Q 014946 131 ESKEVIANALKGSDLVFITAGMGGGTGSGAAPVVAQIAKEAGYLTVGVVTYPFSFEGRKRSSQALEAIERLQKNVDTLIV 210 (415)
Q Consensus 131 e~~e~I~~~le~~D~~~I~agLGGGTGSG~apvia~~ake~g~~tvavvtlP~~~Eg~~r~~nA~~~l~~L~e~~D~viv 210 (415)
-...++...+..-|+++++. .+|-|- -.--+++.+|+.|..++++.-.|. + .|.+.+|.++.
T Consensus 102 ~~~~~~~~~~~~~DllI~iS-~SG~t~--~vi~a~~~Ak~~G~~vI~iT~~~~---s------------~La~~aD~~l~ 163 (196)
T PRK13938 102 VFARALEGSARPGDTLFAIS-TSGNSM--SVLRAAKTARELGVTVVAMTGESG---G------------QLAEFADFLIN 163 (196)
T ss_pred HHHHHHHhcCCCCCEEEEEc-CCCCCH--HHHHHHHHHHHCCCEEEEEeCCCC---C------------hhhhhCCEEEE
Confidence 23344455555667766553 333331 111156788889999998865443 2 35678999998
Q ss_pred EeCch
Q 014946 211 IPNDR 215 (415)
Q Consensus 211 ~dNd~ 215 (415)
++.+.
T Consensus 164 v~~~e 168 (196)
T PRK13938 164 VPSRD 168 (196)
T ss_pred eCCCc
Confidence 87654
No 113
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=82.26 E-value=4.1 Score=40.83 Aligned_cols=45 Identities=22% Similarity=0.374 Sum_probs=34.6
Q ss_pred CcccccCCCCCCCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEEC
Q 014946 47 GNISCSFAPMETAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINT 92 (415)
Q Consensus 47 ~~~~~~~~~~~~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainT 92 (415)
...-++.-+....+|..||+|--|..+|.+|++.|.+ |-.|.++-
T Consensus 24 ~~~~s~~~~~s~~~iGFIGLG~MG~~M~~nLik~G~k-VtV~dr~~ 68 (327)
T KOG0409|consen 24 ETAMSSRITPSKTRIGFIGLGNMGSAMVSNLIKAGYK-VTVYDRTK 68 (327)
T ss_pred cccccccCCcccceeeEEeeccchHHHHHHHHHcCCE-EEEEeCcH
Confidence 3455555666789999999999999999999999965 54444443
No 114
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=82.18 E-value=1.9 Score=36.68 Aligned_cols=95 Identities=16% Similarity=0.190 Sum_probs=55.8
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHH--HHhcCCCCCCeeccccccccCCCCCCchhhHHHHHHHHHHH
Q 014946 59 AKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQ--ALLQSAAENPLQIGDLLTRGLGTGGNPLLGEQAAEESKEVI 136 (415)
Q Consensus 59 ~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~--~L~~~~~~~ki~ig~~~t~G~GaG~n~~~G~~~aee~~e~I 136 (415)
.||+|+|=|..+.+++..+.+.|+ +++++||+.. +.....+++-+.++.. .+...+ .+.++|
T Consensus 3 kkvLIanrGeia~r~~ra~r~~Gi---~tv~v~s~~d~~s~~~~~ad~~~~~~~~---------~~~~~y----l~~e~I 66 (110)
T PF00289_consen 3 KKVLIANRGEIAVRIIRALRELGI---ETVAVNSNPDTVSTHVDMADEAYFEPPG---------PSPESY----LNIEAI 66 (110)
T ss_dssp SEEEESS-HHHHHHHHHHHHHTTS---EEEEEEEGGGTTGHHHHHSSEEEEEESS---------SGGGTT----TSHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHhCC---cceeccCchhcccccccccccceecCcc---------hhhhhh----ccHHHH
Confidence 589999999999999999999874 5999999554 3333345666666521 111111 123344
Q ss_pred HHHhc--CCCEEEEeccCCCCccCChHHHHHHHHHHhCCc
Q 014946 137 ANALK--GSDLVFITAGMGGGTGSGAAPVVAQIAKEAGYL 174 (415)
Q Consensus 137 ~~~le--~~D~~~I~agLGGGTGSG~apvia~~ake~g~~ 174 (415)
.+.++ +||.+ .-|-| .---.+-+++.+.+.|+.
T Consensus 67 ~~ia~~~g~~~i--~pGyg---~lse~~~fa~~~~~~gi~ 101 (110)
T PF00289_consen 67 IDIARKEGADAI--HPGYG---FLSENAEFAEACEDAGII 101 (110)
T ss_dssp HHHHHHTTESEE--ESTSS---TTTTHHHHHHHHHHTT-E
T ss_pred hhHhhhhcCccc--ccccc---hhHHHHHHHHHHHHCCCE
Confidence 44333 55554 32322 334456677777777764
No 115
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=82.01 E-value=1.6 Score=43.98 Aligned_cols=45 Identities=27% Similarity=0.423 Sum_probs=36.0
Q ss_pred CCCCCCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHhcC
Q 014946 54 APMETAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQS 100 (415)
Q Consensus 54 ~~~~~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~ 100 (415)
+...+--+.|||.||.|+-+++.|+++|.+ ....+|.|+-+|..+
T Consensus 70 ~kl~~syVVVVG~GgVGSwv~nmL~RSG~q--Ki~iVDfdqVSlsSL 114 (430)
T KOG2018|consen 70 EKLTNSYVVVVGAGGVGSWVANMLLRSGVQ--KIRIVDFDQVSLSSL 114 (430)
T ss_pred HHhcCcEEEEEecCchhHHHHHHHHHhcCc--eEEEechhhccHhhh
Confidence 344455699999999999999999999976 455788888877654
No 116
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=81.79 E-value=2.8 Score=43.50 Aligned_cols=97 Identities=29% Similarity=0.406 Sum_probs=61.3
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHhcCCC--CCCeeccccccccCCCCCCchhhHHHHHHHHHHH
Q 014946 59 AKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSAA--ENPLQIGDLLTRGLGTGGNPLLGEQAAEESKEVI 136 (415)
Q Consensus 59 ~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~~~--~~ki~ig~~~t~G~GaG~n~~~G~~~aee~~e~I 136 (415)
|+|.|+|.|..|..++..|.+.|. ++++++.|.+.+..... ..++..|. + . +.+.+
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~---~v~vid~~~~~~~~~~~~~~~~~~~gd------~--~-----------~~~~l 58 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENN---DVTVIDTDEERLRRLQDRLDVRTVVGN------G--S-----------SPDVL 58 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC---cEEEEECCHHHHHHHHhhcCEEEEEeC------C--C-----------CHHHH
Confidence 689999999999999999988764 57899999887765432 11222221 1 1 12333
Q ss_pred HHH-hcCCCEEEEeccCCCCccCChHHHHHHHHHHh-CCc-eEEEEecC
Q 014946 137 ANA-LKGSDLVFITAGMGGGTGSGAAPVVAQIAKEA-GYL-TVGVVTYP 182 (415)
Q Consensus 137 ~~~-le~~D~~~I~agLGGGTGSG~apvia~~ake~-g~~-tvavvtlP 182 (415)
.++ ++++|.++++.+= -...-.++..+|++ +.. +++.+..+
T Consensus 59 ~~~~~~~a~~vi~~~~~-----~~~n~~~~~~~r~~~~~~~ii~~~~~~ 102 (453)
T PRK09496 59 REAGAEDADLLIAVTDS-----DETNMVACQIAKSLFGAPTTIARVRNP 102 (453)
T ss_pred HHcCCCcCCEEEEecCC-----hHHHHHHHHHHHHhcCCCeEEEEECCc
Confidence 444 6789988876431 12334466778886 554 55544333
No 117
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=81.77 E-value=2.9 Score=42.00 Aligned_cols=38 Identities=18% Similarity=0.370 Sum_probs=32.1
Q ss_pred eEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHhc
Q 014946 60 KIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQ 99 (415)
Q Consensus 60 ~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~~ 99 (415)
||+|||+||-|+.++..|...|+. ++..+|-|.-...+
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGVg--~ItlvD~D~Ve~sN 38 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVR--HITFVDSGKVSYSN 38 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCC--eEEEECCCEecccc
Confidence 689999999999999999999986 56788887765544
No 118
>PRK15076 alpha-galactosidase; Provisional
Probab=81.48 E-value=5.7 Score=41.77 Aligned_cols=83 Identities=22% Similarity=0.350 Sum_probs=47.1
Q ss_pred CeEEEEeeCcchHH--HHHHHH-HcCCCceEEEEEECCHHHHhcCCCCCCeeccccccccCCCCCCchhhHHHHHHHHHH
Q 014946 59 AKIKVVGVGGGGNN--AVNRMI-GSGLQGVDFYAINTDSQALLQSAAENPLQIGDLLTRGLGTGGNPLLGEQAAEESKEV 135 (415)
Q Consensus 59 ~~i~vIGvGgaG~n--iv~~l~-~~~~~~v~~iainTD~~~L~~~~~~~ki~ig~~~t~G~GaG~n~~~G~~~aee~~e~ 135 (415)
+||.|||.|..|.- .+..+. ..++.+.+.+.+|.|.+.++...+- +-... .-.+. +..+ .....
T Consensus 2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l----~~~~~-~~~~~--~~~i------~~ttD 68 (431)
T PRK15076 2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIV----ARKLA-ESLGA--SAKI------TATTD 68 (431)
T ss_pred cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHH----HHHHH-HhcCC--CeEE------EEECC
Confidence 68999999987743 233444 3455556899999998877531000 00000 00000 0000 00112
Q ss_pred HHHHhcCCCEEEEeccCCC
Q 014946 136 IANALKGSDLVFITAGMGG 154 (415)
Q Consensus 136 I~~~le~~D~~~I~agLGG 154 (415)
..+.+++||.|+++++.||
T Consensus 69 ~~eal~dADfVv~ti~vg~ 87 (431)
T PRK15076 69 RREALQGADYVINAIQVGG 87 (431)
T ss_pred HHHHhCCCCEEeEeeeeCC
Confidence 3567889999999999985
No 119
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=81.23 E-value=6.1 Score=41.42 Aligned_cols=84 Identities=20% Similarity=0.280 Sum_probs=51.5
Q ss_pred CeEEEEeeCcchH-HHHHHHHHc--CCCceEEEEEECC-HHHHhcCCCCCCeeccccccccCCCCCCchhhHHHHHHHHH
Q 014946 59 AKIKVVGVGGGGN-NAVNRMIGS--GLQGVDFYAINTD-SQALLQSAAENPLQIGDLLTRGLGTGGNPLLGEQAAEESKE 134 (415)
Q Consensus 59 ~~i~vIGvGgaG~-niv~~l~~~--~~~~v~~iainTD-~~~L~~~~~~~ki~ig~~~t~G~GaG~n~~~G~~~aee~~e 134 (415)
|||.+||-|+.-. .++.-|+.. .+..-+.+.+|.| .+.|+.+..--+ ...+-.|. ++. -+.-.
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~~~-----~~~~~~~~--~~~------v~~t~ 67 (419)
T cd05296 1 MKLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAK-----RMVKKAGL--PIK------VHLTT 67 (419)
T ss_pred CEEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHHHH-----HHHHhhCC--CeE------EEEeC
Confidence 6999999888754 667777653 3566788999999 788854210000 00000010 010 01123
Q ss_pred HHHHHhcCCCEEEEeccCCCC
Q 014946 135 VIANALKGSDLVFITAGMGGG 155 (415)
Q Consensus 135 ~I~~~le~~D~~~I~agLGGG 155 (415)
..+++++++|.|+++...||=
T Consensus 68 d~~~al~gadfVi~~~~vg~~ 88 (419)
T cd05296 68 DRREALEGADFVFTQIRVGGL 88 (419)
T ss_pred CHHHHhCCCCEEEEEEeeCCc
Confidence 357889999999999999874
No 120
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=81.19 E-value=8.4 Score=41.45 Aligned_cols=108 Identities=22% Similarity=0.269 Sum_probs=67.1
Q ss_pred CCCCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHhcCCC--CCCeeccccccccCCCCCC-chhhHHHHHHH
Q 014946 56 METAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSAA--ENPLQIGDLLTRGLGTGGN-PLLGEQAAEES 132 (415)
Q Consensus 56 ~~~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~~~--~~ki~ig~~~t~G~GaG~n-~~~G~~~aee~ 132 (415)
....|++|+|.|.+|..++..+...|. ..++++.+...++.... .+-+.+.. ...|.+.|+- -+...+..+..
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lGA---~V~v~d~~~~rle~a~~lGa~~v~v~~-~e~g~~~~gYa~~~s~~~~~~~ 237 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLGA---IVRAFDTRPEVKEQVQSMGAEFLELDF-KEEGGSGDGYAKVMSEEFIAAE 237 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHcCCeEEeccc-cccccccccceeecCHHHHHHH
Confidence 346899999999999999999888774 46778888777654321 11223322 1234444432 23344555555
Q ss_pred HHHHHHHhcCCCEEEEeccCCCCccCChHHH--HHHHHHHh
Q 014946 133 KEVIANALKGSDLVFITAGMGGGTGSGAAPV--VAQIAKEA 171 (415)
Q Consensus 133 ~e~I~~~le~~D~~~I~agLGGGTGSG~apv--ia~~ake~ 171 (415)
.+.+.+.++++|.++=++-.-|.. +|. ..++.+.+
T Consensus 238 ~~~~~e~~~~~DIVI~TalipG~~----aP~Lit~emv~~M 274 (511)
T TIGR00561 238 MELFAAQAKEVDIIITTALIPGKP----APKLITEEMVDSM 274 (511)
T ss_pred HHHHHHHhCCCCEEEECcccCCCC----CCeeehHHHHhhC
Confidence 666777888999997666555532 563 33455544
No 121
>PRK04148 hypothetical protein; Provisional
Probab=81.16 E-value=3.5 Score=36.43 Aligned_cols=39 Identities=23% Similarity=0.348 Sum_probs=32.8
Q ss_pred CCCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHhc
Q 014946 57 ETAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQ 99 (415)
Q Consensus 57 ~~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~~ 99 (415)
+++++++||+| .|.+++..|.+.| .+.+++|.|..+.+.
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~G---~~ViaIDi~~~aV~~ 54 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKESG---FDVIVIDINEKAVEK 54 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHHCC---CEEEEEECCHHHHHH
Confidence 35789999999 8988899998776 478999999987764
No 122
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=80.65 E-value=5.2 Score=39.31 Aligned_cols=41 Identities=20% Similarity=0.309 Sum_probs=30.3
Q ss_pred CCCCeEEEEeeCcchHHHHHHHHHcCCCceEEEE-EECCHHHH
Q 014946 56 METAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYA-INTDSQAL 97 (415)
Q Consensus 56 ~~~~~i~vIGvGgaG~niv~~l~~~~~~~v~~ia-inTD~~~L 97 (415)
|..+||.+||+|..|...+..|.+. ..+++..+ +|.|....
T Consensus 4 m~~irIGIIG~G~IG~~~a~~L~~~-~~~~el~aV~dr~~~~a 45 (271)
T PRK13302 4 RPELRVAIAGLGAIGKAIAQALDRG-LPGLTLSAVAVRDPQRH 45 (271)
T ss_pred CCeeEEEEECccHHHHHHHHHHHhc-CCCeEEEEEECCCHHHH
Confidence 5679999999999999999888764 24566554 46666543
No 123
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=80.32 E-value=2.1 Score=42.90 Aligned_cols=68 Identities=21% Similarity=0.260 Sum_probs=51.5
Q ss_pred HHHHHHHHhhcCCCCcEEEEeeecCCCCCeEEEEEEEeCCCccccccccCChhhhhHHhhhhc-cccccCCCCCCCCC
Q 014946 323 NRVSQVVTSLADPSANIIFGAVVDDRYNGEIHVTIIATGFSQSFQKTLLTNPKAAKVLDKAAG-SQESRGVPLPLNTP 399 (415)
Q Consensus 323 ~~i~~~i~~~~~~~a~Ii~G~~~d~~l~~~i~VtvIatG~~~~~~~~~~~~~~~~~~~~~~~~-~~e~~~~~~p~~~~ 399 (415)
+++.+.++++...+ +..++++...-++++..+|.+ +++.+.+ .++.+|+.+..+ ..+++-|+||.++.
T Consensus 223 ~~~~~a~~~Al~~p------ll~~~~~~~A~~~Lv~i~g~~-~l~~~e~--~~~~~~i~~~~~~~~~i~~G~~~~~~~ 291 (303)
T cd02191 223 NRATEAVRKAALGP------LLLPCEIEGAEGALLVMAGPP-DLNLKEI--ERVRKWLEEQTGESATVRGGDYIDNAP 291 (303)
T ss_pred hHHHHHHHHHHhCC------CCCCCCcccCCEEEEEEECCC-CCCHHHH--HHHHHHHHHHcCCCCeEEEeeeeCCCC
Confidence 34555555554332 233456777788999999988 7888888 799999999987 89999999997653
No 124
>PLN02427 UDP-apiose/xylose synthase
Probab=80.27 E-value=6.2 Score=40.12 Aligned_cols=89 Identities=15% Similarity=0.196 Sum_probs=54.7
Q ss_pred cccccCCCCCCCeEEEEee-CcchHHHHHHHHHcCCCceEEEEEECCHHHHhcCCC------CCCeeccccccccCCCCC
Q 014946 48 NISCSFAPMETAKIKVVGV-GGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSAA------ENPLQIGDLLTRGLGTGG 120 (415)
Q Consensus 48 ~~~~~~~~~~~~~i~vIGv-GgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~~~------~~ki~ig~~~t~G~GaG~ 120 (415)
..+....|...|||+|.|- |-.|.+++.+|++.+ +.+.++++.+...+.+... ..++.+ ..|
T Consensus 4 ~~~~~~~~~~~~~VlVTGgtGfIGs~lv~~L~~~~--g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~----~~~----- 72 (386)
T PLN02427 4 RLDLDGKPIKPLTICMIGAGGFIGSHLCEKLMTET--PHKVLALDVYNDKIKHLLEPDTVPWSGRIQF----HRI----- 72 (386)
T ss_pred hhcCCCCcccCcEEEEECCcchHHHHHHHHHHhcC--CCEEEEEecCchhhhhhhccccccCCCCeEE----EEc-----
Confidence 4566777888899999995 999999999999874 1345666643332222110 011111 000
Q ss_pred CchhhHHHHHHHHHHHHHHhcCCCEEEEeccCCCC
Q 014946 121 NPLLGEQAAEESKEVIANALKGSDLVFITAGMGGG 155 (415)
Q Consensus 121 n~~~G~~~aee~~e~I~~~le~~D~~~I~agLGGG 155 (415)
|- .+.+.+.+.++++|.||=+|+..+.
T Consensus 73 Dl--------~d~~~l~~~~~~~d~ViHlAa~~~~ 99 (386)
T PLN02427 73 NI--------KHDSRLEGLIKMADLTINLAAICTP 99 (386)
T ss_pred CC--------CChHHHHHHhhcCCEEEEcccccCh
Confidence 10 1234566777889999888887654
No 125
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=80.16 E-value=6.5 Score=41.13 Aligned_cols=127 Identities=8% Similarity=0.195 Sum_probs=75.1
Q ss_pred CCCCCCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHhcCCCCCCeeccccccccCCCCCCchhhHHHHHHHH
Q 014946 54 APMETAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSAAENPLQIGDLLTRGLGTGGNPLLGEQAAEESK 133 (415)
Q Consensus 54 ~~~~~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~~~~~ki~ig~~~t~G~GaG~n~~~G~~~aee~~ 133 (415)
......+++|||.|++|.-++.+|...|.. +.+.+|-+......+... +|.+ . + ...
T Consensus 177 ~~l~~kkvlviGaG~~a~~va~~L~~~g~~--~I~V~nRt~~ra~~La~~------------~~~~-~------~--~~~ 233 (414)
T PRK13940 177 DNISSKNVLIIGAGQTGELLFRHVTALAPK--QIMLANRTIEKAQKITSA------------FRNA-S------A--HYL 233 (414)
T ss_pred cCccCCEEEEEcCcHHHHHHHHHHHHcCCC--EEEEECCCHHHHHHHHHH------------hcCC-e------E--ecH
Confidence 345678999999999999999999988864 567778765433221100 0000 0 0 123
Q ss_pred HHHHHHhcCCCEEEEeccCCCCccCChHHHHH-HHHHHhCCceEEEEecCCCCchhhhHHHHHHHHHHHHhhCCEEEEEe
Q 014946 134 EVIANALKGSDLVFITAGMGGGTGSGAAPVVA-QIAKEAGYLTVGVVTYPFSFEGRKRSSQALEAIERLQKNVDTLIVIP 212 (415)
Q Consensus 134 e~I~~~le~~D~~~I~agLGGGTGSG~apvia-~~ake~g~~tvavvtlP~~~Eg~~r~~nA~~~l~~L~e~~D~viv~d 212 (415)
+++.+.+.++|+||-+.+-. -|+|. +..+..+...+=+ ..|-..|... ...+.+.++|
T Consensus 234 ~~l~~~l~~aDiVI~aT~a~-------~~vi~~~~~~~~~~~~iDL-avPRdidp~v-------------~~l~~v~l~~ 292 (414)
T PRK13940 234 SELPQLIKKADIIIAAVNVL-------EYIVTCKYVGDKPRVFIDI-SIPQALDPKL-------------GELEQNVYYC 292 (414)
T ss_pred HHHHHHhccCCEEEECcCCC-------CeeECHHHhCCCCeEEEEe-CCCCCCCccc-------------cCcCCeEEEe
Confidence 56677788999998764322 34443 2222222222322 4677665421 2336678888
Q ss_pred CchhhhhccccC
Q 014946 213 NDRLLDITDEQT 224 (415)
Q Consensus 213 Nd~L~~~~~~~~ 224 (415)
=|.|.++..++.
T Consensus 293 iDdl~~i~~~n~ 304 (414)
T PRK13940 293 VDDINAVIEDNK 304 (414)
T ss_pred HHHHHHHHHHHH
Confidence 888888776443
No 126
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=80.06 E-value=2.8 Score=37.63 Aligned_cols=38 Identities=16% Similarity=0.323 Sum_probs=29.4
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHhc
Q 014946 59 AKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQ 99 (415)
Q Consensus 59 ~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~~ 99 (415)
+||.+||+|-.|..++.+|.+.|. +.++.|-+.+.++.
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~---~v~~~d~~~~~~~~ 39 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGY---EVTVYDRSPEKAEA 39 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTT---EEEEEESSHHHHHH
T ss_pred CEEEEEchHHHHHHHHHHHHhcCC---eEEeeccchhhhhh
Confidence 689999999999999999999885 35677877765543
No 127
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=79.70 E-value=14 Score=36.51 Aligned_cols=33 Identities=18% Similarity=0.284 Sum_probs=27.7
Q ss_pred EEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHH
Q 014946 61 IKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQ 95 (415)
Q Consensus 61 i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~ 95 (415)
|.|||.|..|..++..|...++. +.+.+|.|..
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~--eV~L~Di~e~ 33 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELG--DVVLLDIVEG 33 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCc--EEEEEeCCCc
Confidence 57999999999999998888764 7888888754
No 128
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=79.57 E-value=16 Score=36.84 Aligned_cols=35 Identities=20% Similarity=0.332 Sum_probs=28.3
Q ss_pred CCeEEEEee-CcchHHHHHHHHHcCCCc----eEEEEEEC
Q 014946 58 TAKIKVVGV-GGGGNNAVNRMIGSGLQG----VDFYAINT 92 (415)
Q Consensus 58 ~~~i~vIGv-GgaG~niv~~l~~~~~~~----v~~iainT 92 (415)
..||.|||. |..|..++-.|...++.+ .+.+.+|.
T Consensus 2 p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di 41 (322)
T cd01338 2 PVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLEL 41 (322)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEec
Confidence 469999999 999999999998777632 36777777
No 129
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=79.25 E-value=1.7 Score=42.92 Aligned_cols=38 Identities=21% Similarity=0.344 Sum_probs=32.4
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHhc
Q 014946 59 AKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQ 99 (415)
Q Consensus 59 ~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~~ 99 (415)
.||.|||.|.-|..|+..+...|. +.+.+|.+.+.++.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~---~V~l~d~~~~~~~~ 43 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGV---DVLVFETTEELATA 43 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCC---EEEEEECCHHHHHH
Confidence 389999999999999999988875 47788888888765
No 130
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=79.20 E-value=3.1 Score=41.99 Aligned_cols=87 Identities=16% Similarity=0.194 Sum_probs=50.4
Q ss_pred CCeEEEEee-CcchHHHHHHHHHcCCC----ceEEEEEECCHHHHhcCCCCCCeeccccccccCCCCCCchhhHHHHHHH
Q 014946 58 TAKIKVVGV-GGGGNNAVNRMIGSGLQ----GVDFYAINTDSQALLQSAAENPLQIGDLLTRGLGTGGNPLLGEQAAEES 132 (415)
Q Consensus 58 ~~~i~vIGv-GgaG~niv~~l~~~~~~----~v~~iainTD~~~L~~~~~~~ki~ig~~~t~G~GaG~n~~~G~~~aee~ 132 (415)
..||.|+|. |..|..++..|...++. +.+.+.+|.+.. .+.... ..+-+-. .+ .+..+ .. ..
T Consensus 2 ~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~-~~~~~g-~~~Dl~d------~~--~~~~~-~~--~~ 68 (325)
T cd01336 2 PIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPA-LKALEG-VVMELQD------CA--FPLLK-SV--VA 68 (325)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCc-cccccc-eeeehhh------cc--ccccC-Cc--ee
Confidence 478999999 99999999999987764 246777877432 111110 1111110 00 00000 00 01
Q ss_pred HHHHHHHhcCCCEEEEeccCCCCcc
Q 014946 133 KEVIANALKGSDLVFITAGMGGGTG 157 (415)
Q Consensus 133 ~e~I~~~le~~D~~~I~agLGGGTG 157 (415)
.....+.+++||.|+++||.--..|
T Consensus 69 ~~~~~~~l~~aDiVI~tAG~~~~~~ 93 (325)
T cd01336 69 TTDPEEAFKDVDVAILVGAMPRKEG 93 (325)
T ss_pred cCCHHHHhCCCCEEEEeCCcCCCCC
Confidence 1234566789999999999865543
No 131
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=78.99 E-value=7.2 Score=40.38 Aligned_cols=40 Identities=20% Similarity=0.278 Sum_probs=28.1
Q ss_pred CCCCeEEEEee-CcchHHHHHHHHHcCCCceEEEEEECCHHHH
Q 014946 56 METAKIKVVGV-GGGGNNAVNRMIGSGLQGVDFYAINTDSQAL 97 (415)
Q Consensus 56 ~~~~~i~vIGv-GgaG~niv~~l~~~~~~~v~~iainTD~~~L 97 (415)
.+.+||.|+|. |..|..++..|.++ +.++..++-.+.++.
T Consensus 36 ~~~~kVaIvGATG~vG~eLlrlL~~h--P~~el~~l~s~~saG 76 (381)
T PLN02968 36 EEKKRIFVLGASGYTGAEVRRLLANH--PDFEITVMTADRKAG 76 (381)
T ss_pred ccccEEEEECCCChHHHHHHHHHHhC--CCCeEEEEEChhhcC
Confidence 46789999999 67788888877777 345555665555443
No 132
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=78.86 E-value=3.4 Score=41.18 Aligned_cols=37 Identities=16% Similarity=0.427 Sum_probs=29.4
Q ss_pred eEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHH
Q 014946 60 KIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQAL 97 (415)
Q Consensus 60 ~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L 97 (415)
||.|||.|+.|..++..|...++. .+.+.+|-|.+..
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~-~ei~l~D~~~~~~ 38 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIA-DELVLIDINEEKA 38 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCC-CEEEEEeCCcchh
Confidence 899999999999999999888863 3566777655443
No 133
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=78.53 E-value=14 Score=36.11 Aligned_cols=39 Identities=13% Similarity=0.221 Sum_probs=29.3
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCceEE-EEEECCHHHHh
Q 014946 59 AKIKVVGVGGGGNNAVNRMIGSGLQGVDF-YAINTDSQALL 98 (415)
Q Consensus 59 ~~i~vIGvGgaG~niv~~l~~~~~~~v~~-iainTD~~~L~ 98 (415)
|||.|||+|..|..++..+.+.+. +++. ..+|.|.+...
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~-~~elv~v~d~~~~~a~ 41 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRI-NAELYAFYDRNLEKAE 41 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCC-CeEEEEEECCCHHHHH
Confidence 689999999999999998876543 4553 45677776554
No 134
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=78.38 E-value=3.9 Score=40.15 Aligned_cols=38 Identities=16% Similarity=0.392 Sum_probs=30.5
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHhc
Q 014946 59 AKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQ 99 (415)
Q Consensus 59 ~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~~ 99 (415)
++|.|||.|.-|..++..|.+.|. +.++.|.+...++.
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~---~v~~~d~~~~~~~~ 40 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGY---SLVVYDRNPEAVAE 40 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCC---eEEEEcCCHHHHHH
Confidence 689999999999999999998774 35667877665543
No 135
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=78.22 E-value=4.1 Score=40.25 Aligned_cols=39 Identities=23% Similarity=0.271 Sum_probs=30.7
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHhcC
Q 014946 59 AKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQS 100 (415)
Q Consensus 59 ~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~ 100 (415)
|||.|||.|.-|+.++..|.+.|.+ + ..+|.+...++.+
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~~-V--~~~~r~~~~~~~~ 40 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGHD-V--TLWARDPEQAAEI 40 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCE-E--EEEECCHHHHHHH
Confidence 6899999999999999999988743 4 5667776665543
No 136
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=78.16 E-value=9.6 Score=39.55 Aligned_cols=41 Identities=17% Similarity=0.210 Sum_probs=34.7
Q ss_pred CCCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHhcC
Q 014946 57 ETAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQS 100 (415)
Q Consensus 57 ~~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~ 100 (415)
..++|.|+|.|.-|-.+++.|.+.+ .++++++.|.+.++..
T Consensus 230 ~~~~iiIiG~G~~g~~l~~~L~~~~---~~v~vid~~~~~~~~~ 270 (453)
T PRK09496 230 PVKRVMIVGGGNIGYYLAKLLEKEG---YSVKLIERDPERAEEL 270 (453)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC---CeEEEEECCHHHHHHH
Confidence 4688999999999999999998866 4589999998876543
No 137
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=78.08 E-value=4.5 Score=32.44 Aligned_cols=40 Identities=18% Similarity=0.419 Sum_probs=31.9
Q ss_pred eEEEEeeCcchHHHHHHHHHcCCCceEEEEE-ECCHHHHhc
Q 014946 60 KIKVVGVGGGGNNAVNRMIGSGLQGVDFYAI-NTDSQALLQ 99 (415)
Q Consensus 60 ~i~vIGvGgaG~niv~~l~~~~~~~v~~iai-nTD~~~L~~ 99 (415)
||.+||.|.-|..++..|.++++...+.+.+ +-+.+.+.+
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~ 41 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAE 41 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHH
Confidence 7999999999999999999998655666645 777776654
No 138
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=78.02 E-value=49 Score=29.31 Aligned_cols=118 Identities=14% Similarity=0.137 Sum_probs=65.1
Q ss_pred CCCeEEEEeeCcchHHHHHHHH----HcCC--CceEEEEEECCHHHHhcCCCCCCeeccccccccCCCCCCchhhHHHHH
Q 014946 57 ETAKIKVVGVGGGGNNAVNRMI----GSGL--QGVDFYAINTDSQALLQSAAENPLQIGDLLTRGLGTGGNPLLGEQAAE 130 (415)
Q Consensus 57 ~~~~i~vIGvGgaG~niv~~l~----~~~~--~~v~~iainTD~~~L~~~~~~~ki~ig~~~t~G~GaG~n~~~G~~~ae 130 (415)
+..+|-++|+|+.+..+-+.-. +.++ .+...++++.|...+..... ++. ..+
T Consensus 10 ~a~rI~~~G~G~S~~~A~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~------------------d~~----~~~ 67 (154)
T TIGR00441 10 AGGKVLICGNGGSACDAQHFAAELTGRYRENRPGLPAIALSADVSHLTCVSN------------------DYG----YED 67 (154)
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHhhcccccCCCCceEEecCCcHHHHHHhhc------------------cCC----HHH
Confidence 3567999999998875443311 2221 23455555546544322110 110 111
Q ss_pred HHHHHHHHHhcCCCEEEEeccCCCCccCChHHHHHHHHHHhCCceEEEEecCCCCchhhhHHHHHHHHHHHHhhCCEEEE
Q 014946 131 ESKEVIANALKGSDLVFITAGMGGGTGSGAAPVVAQIAKEAGYLTVGVVTYPFSFEGRKRSSQALEAIERLQKNVDTLIV 210 (415)
Q Consensus 131 e~~e~I~~~le~~D~~~I~agLGGGTGSG~apvia~~ake~g~~tvavvtlP~~~Eg~~r~~nA~~~l~~L~e~~D~viv 210 (415)
....++...+..-|+++++.. .|-| .-.--+++.+|+.|..++++.-.|.. .|.+.+|.++.
T Consensus 68 ~~~~~~~~~~~~~D~~i~iS~-sG~t--~~~~~~~~~a~~~g~~ii~iT~~~~s---------------~l~~~ad~~l~ 129 (154)
T TIGR00441 68 VFSRQVEALGQKGDVLLGIST-SGNS--KNVLKAIEAAKDKGMKTITLAGKDGG---------------KMAGLADIELR 129 (154)
T ss_pred HHHHHHHHhCCCCCEEEEEcC-CCCC--HHHHHHHHHHHHCCCEEEEEeCCCCC---------------chhhhCCEEEE
Confidence 222334445566787776644 3322 11222678889999999988654332 35678999888
Q ss_pred EeCc
Q 014946 211 IPND 214 (415)
Q Consensus 211 ~dNd 214 (415)
++..
T Consensus 130 ~~~~ 133 (154)
T TIGR00441 130 VPHF 133 (154)
T ss_pred eCCC
Confidence 8765
No 139
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=78.00 E-value=7 Score=38.88 Aligned_cols=34 Identities=21% Similarity=0.509 Sum_probs=27.1
Q ss_pred EEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHH
Q 014946 61 IKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQ 95 (415)
Q Consensus 61 i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~ 95 (415)
|.|||.|+.|+.++-.+...++. -+.+.+|.+..
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~-~el~l~D~~~~ 34 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLA-SELVLVDVNEE 34 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCC-CEEEEEeCCcc
Confidence 57999999999999888888764 46777887543
No 140
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=77.95 E-value=6.1 Score=40.95 Aligned_cols=39 Identities=21% Similarity=0.289 Sum_probs=32.2
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHhcC
Q 014946 59 AKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQS 100 (415)
Q Consensus 59 ~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~ 100 (415)
|||.|||.|-.|.-++..|.+.|. +.+.+|.|...++.+
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G~---~V~~~d~~~~~v~~l 39 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLGH---EVTGVDIDQEKVDKL 39 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcCC---eEEEEECCHHHHHHh
Confidence 589999999999999999998875 367788887766544
No 141
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=77.62 E-value=8.9 Score=37.90 Aligned_cols=40 Identities=15% Similarity=0.394 Sum_probs=31.7
Q ss_pred CCCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHh
Q 014946 57 ETAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALL 98 (415)
Q Consensus 57 ~~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~ 98 (415)
...++.|||.||+|..++..|...|+. +...+|-|....+
T Consensus 126 ~~k~vlIlGaGGaaraia~aL~~~G~~--~I~I~nR~~~ka~ 165 (284)
T PRK12549 126 SLERVVQLGAGGAGAAVAHALLTLGVE--RLTIFDVDPARAA 165 (284)
T ss_pred cCCEEEEECCcHHHHHHHHHHHHcCCC--EEEEECCCHHHHH
Confidence 457899999999999999999998865 4566777665443
No 142
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=77.45 E-value=4.9 Score=38.70 Aligned_cols=40 Identities=18% Similarity=0.194 Sum_probs=30.4
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHh
Q 014946 59 AKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALL 98 (415)
Q Consensus 59 ~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~ 98 (415)
|+|.+||.|--|..++..|.+.+.....++..|-+.+..+
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~ 40 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAA 40 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHH
Confidence 5799999999999999999988754233456666666544
No 143
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=77.28 E-value=6 Score=38.19 Aligned_cols=40 Identities=18% Similarity=0.273 Sum_probs=29.5
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCceEEEE-EECCHHHHhc
Q 014946 59 AKIKVVGVGGGGNNAVNRMIGSGLQGVDFYA-INTDSQALLQ 99 (415)
Q Consensus 59 ~~i~vIGvGgaG~niv~~l~~~~~~~v~~ia-inTD~~~L~~ 99 (415)
++|.+||+|..|.-++..+.... .++++++ .|+|.....+
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~-~~~e~v~v~D~~~ek~~~ 41 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGR-VDFELVAVYDRDEEKAKE 41 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCC-cceeEEEEecCCHHHHHH
Confidence 58999999999999887765443 5677655 4888776543
No 144
>CHL00194 ycf39 Ycf39; Provisional
Probab=77.07 E-value=29 Score=34.16 Aligned_cols=96 Identities=18% Similarity=0.170 Sum_probs=52.8
Q ss_pred CeEEEEee-CcchHHHHHHHHHcCCCceEEEEEECCHHHHhcCCC-CCCeeccccccccCCCCCCchhhHHHHHHHHHHH
Q 014946 59 AKIKVVGV-GGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSAA-ENPLQIGDLLTRGLGTGGNPLLGEQAAEESKEVI 136 (415)
Q Consensus 59 ~~i~vIGv-GgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~~~-~~ki~ig~~~t~G~GaG~n~~~G~~~aee~~e~I 136 (415)
|||+|+|- |-.|..++.+|.+.|.+ |.++.=+ ......... .-.+..| |. .+.+.+
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~-V~~l~R~--~~~~~~l~~~~v~~v~~-----------Dl--------~d~~~l 58 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQ-VRCLVRN--LRKASFLKEWGAELVYG-----------DL--------SLPETL 58 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCe-EEEEEcC--hHHhhhHhhcCCEEEEC-----------CC--------CCHHHH
Confidence 68999995 99999999999998743 4444333 222211110 1111111 11 123556
Q ss_pred HHHhcCCCEEEEeccCCCCccCC-------hHHHHHHHHHHhCCceE
Q 014946 137 ANALKGSDLVFITAGMGGGTGSG-------AAPVVAQIAKEAGYLTV 176 (415)
Q Consensus 137 ~~~le~~D~~~I~agLGGGTGSG-------~apvia~~ake~g~~tv 176 (415)
.++++++|.|+-+++........ ++.-+.+.+++.+...+
T Consensus 59 ~~al~g~d~Vi~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~gvkr~ 105 (317)
T CHL00194 59 PPSFKGVTAIIDASTSRPSDLYNAKQIDWDGKLALIEAAKAAKIKRF 105 (317)
T ss_pred HHHHCCCCEEEECCCCCCCCccchhhhhHHHHHHHHHHHHHcCCCEE
Confidence 78889999877654321110000 12336677888776433
No 145
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=77.05 E-value=6.9 Score=38.74 Aligned_cols=38 Identities=21% Similarity=0.410 Sum_probs=30.3
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHhc
Q 014946 59 AKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQ 99 (415)
Q Consensus 59 ~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~~ 99 (415)
|+|.+||+|.-|..++.+|.+.+. +.+..|-+....+.
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~g~---~v~v~dr~~~~~~~ 38 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLREDGH---EVVGYDVNQEAVDV 38 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhCCC---EEEEEECCHHHHHH
Confidence 579999999999999999998874 35567877665543
No 146
>PRK07680 late competence protein ComER; Validated
Probab=76.97 E-value=5 Score=39.08 Aligned_cols=41 Identities=17% Similarity=0.293 Sum_probs=31.2
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCC-CceEEEEEECCHHHHhc
Q 014946 59 AKIKVVGVGGGGNNAVNRMIGSGL-QGVDFYAINTDSQALLQ 99 (415)
Q Consensus 59 ~~i~vIGvGgaG~niv~~l~~~~~-~~v~~iainTD~~~L~~ 99 (415)
|+|.|||.|.-|..++..|.+.+. ...+.+.+|-+.+.++.
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~ 42 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYH 42 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHH
Confidence 579999999999999999998873 32345667777665543
No 147
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=76.94 E-value=29 Score=40.68 Aligned_cols=122 Identities=14% Similarity=0.151 Sum_probs=69.8
Q ss_pred CCeEEEEeeCcchHHHHHHHHHcC-CC----------ceEEEEEECCHHHHhcCCCCCCeeccccccccCCCCCCchhhH
Q 014946 58 TAKIKVVGVGGGGNNAVNRMIGSG-LQ----------GVDFYAINTDSQALLQSAAENPLQIGDLLTRGLGTGGNPLLGE 126 (415)
Q Consensus 58 ~~~i~vIGvGgaG~niv~~l~~~~-~~----------~v~~iainTD~~~L~~~~~~~ki~ig~~~t~G~GaG~n~~~G~ 126 (415)
..||+|||.|..|..+++.|.+.. .. ......+|.+.+..+....... ++ .+ +
T Consensus 569 ~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~-----------~~--~~-v-- 632 (1042)
T PLN02819 569 SQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIE-----------NA--EA-V-- 632 (1042)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcC-----------CC--ce-E--
Confidence 558999999999999999998752 11 1124445666555443211100 00 00 0
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeccCCCCccCChHHHHHHHHHHhCCceEEEEecCCCCchhhhHHHHHHHHHHHHhhCC
Q 014946 127 QAAEESKEVIANALKGSDLVFITAGMGGGTGSGAAPVVAQIAKEAGYLTVGVVTYPFSFEGRKRSSQALEAIERLQKNVD 206 (415)
Q Consensus 127 ~~aee~~e~I~~~le~~D~~~I~agLGGGTGSG~apvia~~ake~g~~tvavvtlP~~~Eg~~r~~nA~~~l~~L~e~~D 206 (415)
+.--.+.+++.+.++++|+|+++.. ...-+.+++.|-+.|+.++.. -+..+ +...+.+..+.+.
T Consensus 633 ~lDv~D~e~L~~~v~~~DaVIsalP------~~~H~~VAkaAieaGkHvv~e---ky~~~-------e~~~L~e~Ak~AG 696 (1042)
T PLN02819 633 QLDVSDSESLLKYVSQVDVVISLLP------ASCHAVVAKACIELKKHLVTA---SYVSE-------EMSALDSKAKEAG 696 (1042)
T ss_pred EeecCCHHHHHHhhcCCCEEEECCC------chhhHHHHHHHHHcCCCEEEC---cCCHH-------HHHHHHHHHHHcC
Confidence 0000244667777888999988643 334566888888889876532 12111 2344555566666
Q ss_pred EEEEE
Q 014946 207 TLIVI 211 (415)
Q Consensus 207 ~viv~ 211 (415)
..++.
T Consensus 697 V~~m~ 701 (1042)
T PLN02819 697 ITILC 701 (1042)
T ss_pred CEEEE
Confidence 55554
No 148
>PRK06182 short chain dehydrogenase; Validated
Probab=76.87 E-value=15 Score=35.17 Aligned_cols=82 Identities=17% Similarity=0.224 Sum_probs=49.8
Q ss_pred CCCeEEEEee-CcchHHHHHHHHHcCCCceEEEEEECCHHHHhcCCCCC-CeeccccccccCCCCCCchhhHHHHHHHHH
Q 014946 57 ETAKIKVVGV-GGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSAAEN-PLQIGDLLTRGLGTGGNPLLGEQAAEESKE 134 (415)
Q Consensus 57 ~~~~i~vIGv-GgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~~~~~-ki~ig~~~t~G~GaG~n~~~G~~~aee~~e 134 (415)
++.++.|.|. |+.|..++.+|.+.|. +.+++.-+.+.++...... ....+. + .|+ +..++..+
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~G~---~V~~~~r~~~~l~~~~~~~~~~~~~D-v-------~~~----~~~~~~~~ 66 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLAAQGY---TVYGAARRVDKMEDLASLGVHPLSLD-V-------TDE----ASIKAAVD 66 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHhCCCeEEEee-C-------CCH----HHHHHHHH
Confidence 4567999996 7889999999988764 4666666766665432211 111111 1 112 23344445
Q ss_pred HHHHHhcCCCEEEEeccCC
Q 014946 135 VIANALKGSDLVFITAGMG 153 (415)
Q Consensus 135 ~I~~~le~~D~~~I~agLG 153 (415)
++.+...++|.++-.+|.+
T Consensus 67 ~~~~~~~~id~li~~ag~~ 85 (273)
T PRK06182 67 TIIAEEGRIDVLVNNAGYG 85 (273)
T ss_pred HHHHhcCCCCEEEECCCcC
Confidence 5555556889998888764
No 149
>PRK14852 hypothetical protein; Provisional
Probab=76.84 E-value=5.9 Score=45.68 Aligned_cols=44 Identities=16% Similarity=0.378 Sum_probs=36.5
Q ss_pred CCCCCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHhcC
Q 014946 55 PMETAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQS 100 (415)
Q Consensus 55 ~~~~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~ 100 (415)
...+.||+|||+||.|+.++..|...|+. .+..+|-|.-.+.++
T Consensus 329 kL~~srVlVvGlGGlGs~ia~~LAraGVG--~I~L~D~D~Ve~SNL 372 (989)
T PRK14852 329 RLLRSRVAIAGLGGVGGIHLMTLARTGIG--NFNLADFDAYSPVNL 372 (989)
T ss_pred HHhcCcEEEECCcHHHHHHHHHHHHcCCC--eEEEEcCCEeccccc
Confidence 44678999999999999999999999984 567888877666554
No 150
>PLN02712 arogenate dehydrogenase
Probab=76.83 E-value=5.7 Score=44.16 Aligned_cols=42 Identities=19% Similarity=0.259 Sum_probs=32.0
Q ss_pred ccccCCCCCCCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECC
Q 014946 49 ISCSFAPMETAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTD 93 (415)
Q Consensus 49 ~~~~~~~~~~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD 93 (415)
-+++-+...+++|.|||+|..|..++..|.+.|. +.+++|-+
T Consensus 43 ~~~~~~~~~~~kIgIIG~G~mG~slA~~L~~~G~---~V~~~dr~ 84 (667)
T PLN02712 43 PNSNPDNTTQLKIAIIGFGNYGQFLAKTLISQGH---TVLAHSRS 84 (667)
T ss_pred CCCCCccCCCCEEEEEccCHHHHHHHHHHHHCCC---EEEEEeCC
Confidence 3445556667899999999999999999998873 34556554
No 151
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=76.78 E-value=14 Score=35.85 Aligned_cols=92 Identities=21% Similarity=0.313 Sum_probs=52.5
Q ss_pred CeEEEEee-CcchHHHHHHHHHcCCCceEEEE-EECCHHHHhcCCCCCCeeccccccccCCCCCCchhhHHHHHHHHHHH
Q 014946 59 AKIKVVGV-GGGGNNAVNRMIGSGLQGVDFYA-INTDSQALLQSAAENPLQIGDLLTRGLGTGGNPLLGEQAAEESKEVI 136 (415)
Q Consensus 59 ~~i~vIGv-GgaG~niv~~l~~~~~~~v~~ia-inTD~~~L~~~~~~~ki~ig~~~t~G~GaG~n~~~G~~~aee~~e~I 136 (415)
+||.|||. |.-|..++..+.+. ++++.++ +|.|....... .. .|. . ..+.+
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~--~~~elvav~d~~~~~~~~~--------~~-----~~i--------~----~~~dl 54 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAA--EDLELVAAVDRPGSPLVGQ--------GA-----LGV--------A----ITDDL 54 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhC--CCCEEEEEEecCCcccccc--------CC-----CCc--------c----ccCCH
Confidence 79999999 99999999877654 3455554 56665432211 00 111 0 11223
Q ss_pred HHHhcCCCEEEEeccCCCCccCChHHHHHHHHHHhCCceEEEEecCCC
Q 014946 137 ANALKGSDLVFITAGMGGGTGSGAAPVVAQIAKEAGYLTVGVVTYPFS 184 (415)
Q Consensus 137 ~~~le~~D~~~I~agLGGGTGSG~apvia~~ake~g~~tvavvtlP~~ 184 (415)
.++++++|+++.++ +-+.. .-+++.+-+.|+.++ +.|+=+.
T Consensus 55 ~~ll~~~DvVid~t-----~p~~~-~~~~~~al~~G~~vv-igttG~s 95 (257)
T PRK00048 55 EAVLADADVLIDFT-----TPEAT-LENLEFALEHGKPLV-IGTTGFT 95 (257)
T ss_pred HHhccCCCEEEECC-----CHHHH-HHHHHHHHHcCCCEE-EECCCCC
Confidence 33455799888775 22222 335566677888766 3354343
No 152
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=76.75 E-value=8.4 Score=40.62 Aligned_cols=41 Identities=17% Similarity=0.230 Sum_probs=32.5
Q ss_pred eEEEEeeCcchHHHHHHHHHcCC---CceEEEEEECCHHHHhcC
Q 014946 60 KIKVVGVGGGGNNAVNRMIGSGL---QGVDFYAINTDSQALLQS 100 (415)
Q Consensus 60 ~i~vIGvGgaG~niv~~l~~~~~---~~v~~iainTD~~~L~~~ 100 (415)
||.|||+||.||-++..|...|+ .+-....+|-|.-.+.++
T Consensus 1 kVlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~Ie~SNL 44 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNL 44 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEECCCCcccccc
Confidence 68999999999999999999987 223667788877665543
No 153
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=76.70 E-value=14 Score=37.28 Aligned_cols=85 Identities=18% Similarity=0.178 Sum_probs=49.3
Q ss_pred CeEEEEee-CcchHHHHHHHHHcCCCc----eEEEEEECCHH--HHhcCCCCCCeeccccccccCCCCCCchhhHHHHHH
Q 014946 59 AKIKVVGV-GGGGNNAVNRMIGSGLQG----VDFYAINTDSQ--ALLQSAAENPLQIGDLLTRGLGTGGNPLLGEQAAEE 131 (415)
Q Consensus 59 ~~i~vIGv-GgaG~niv~~l~~~~~~~----v~~iainTD~~--~L~~~~~~~ki~ig~~~t~G~GaG~n~~~G~~~aee 131 (415)
.||.|||. |..|..++-.|...++.+ .+.+.+|.+.. .++. ...-+-..... . ..+..
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g----~~~Dl~d~~~~-~--~~~~~-------- 65 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEG----VVMELQDCAFP-L--LKGVV-------- 65 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccce----eeeehhhhccc-c--cCCcE--------
Confidence 48999999 999999999888777643 25677777642 1111 01111000000 0 00000
Q ss_pred HHHHHHHHhcCCCEEEEeccCCCCccC
Q 014946 132 SKEVIANALKGSDLVFITAGMGGGTGS 158 (415)
Q Consensus 132 ~~e~I~~~le~~D~~~I~agLGGGTGS 158 (415)
......+.+++||.|+++||..-..|.
T Consensus 66 i~~~~~~~~~~aDiVVitAG~~~~~g~ 92 (323)
T cd00704 66 ITTDPEEAFKDVDVAILVGAFPRKPGM 92 (323)
T ss_pred EecChHHHhCCCCEEEEeCCCCCCcCC
Confidence 112235678899999999998766553
No 154
>PRK13937 phosphoheptose isomerase; Provisional
Probab=75.99 E-value=40 Score=31.01 Aligned_cols=119 Identities=20% Similarity=0.304 Sum_probs=65.5
Q ss_pred CCCeEEEEeeCcchHHHHH---HHH-HcCC--CceEEEEEECCHHHHhcCCCCCCeeccccccccCCCCCCchhhHHHHH
Q 014946 57 ETAKIKVVGVGGGGNNAVN---RMI-GSGL--QGVDFYAINTDSQALLQSAAENPLQIGDLLTRGLGTGGNPLLGEQAAE 130 (415)
Q Consensus 57 ~~~~i~vIGvGgaG~niv~---~l~-~~~~--~~v~~iainTD~~~L~~~~~~~ki~ig~~~t~G~GaG~n~~~G~~~ae 130 (415)
+.-||-++|.|..+..+.+ .+. +..+ .+...++...|...+.... +++ |. ..
T Consensus 37 ~a~rI~i~G~G~S~~~A~~~a~~~~~~~~~~r~g~~~~~~~~d~~~~~~~~------------------~d~--~~--~~ 94 (188)
T PRK13937 37 NGGKILLCGNGGSAADAQHIAAELVGRFKKERPALPAIALTTDTSALTAIG------------------NDY--GF--ER 94 (188)
T ss_pred CCCEEEEEeCcHhHHHHHHHHHHhhccccCCCCCcceEeccCcHHHHHHHh------------------ccC--CH--HH
Confidence 3567999999998874432 222 2221 2455666666765442210 000 00 01
Q ss_pred HHHHHHHHHhcCCCEEEEeccCCCCccCChHHHHHHHHHHhCCceEEEEecCCCCchhhhHHHHHHHHHHHHhhCCEEEE
Q 014946 131 ESKEVIANALKGSDLVFITAGMGGGTGSGAAPVVAQIAKEAGYLTVGVVTYPFSFEGRKRSSQALEAIERLQKNVDTLIV 210 (415)
Q Consensus 131 e~~e~I~~~le~~D~~~I~agLGGGTGSG~apvia~~ake~g~~tvavvtlP~~~Eg~~r~~nA~~~l~~L~e~~D~viv 210 (415)
....++...+..-|+++++.. +|-| --.--+++.+|+.|..++++...|. + .|.+.+|.++.
T Consensus 95 ~~~~~~~~~~~~~Dl~i~iS~-sG~t--~~~~~~~~~ak~~g~~~I~iT~~~~---s------------~L~~~ad~~l~ 156 (188)
T PRK13937 95 VFSRQVEALGRPGDVLIGIST-SGNS--PNVLAALEKARELGMKTIGLTGRDG---G------------KMKELCDHLLI 156 (188)
T ss_pred HHHHHHHhhCCCCCEEEEEeC-CCCc--HHHHHHHHHHHHCCCeEEEEeCCCC---C------------hhHHhCCEEEE
Confidence 112333444566677666543 3332 1122256788889999998875433 2 36678999998
Q ss_pred EeCch
Q 014946 211 IPNDR 215 (415)
Q Consensus 211 ~dNd~ 215 (415)
++...
T Consensus 157 ~~~~e 161 (188)
T PRK13937 157 VPSDD 161 (188)
T ss_pred eCCCC
Confidence 87643
No 155
>PLN00203 glutamyl-tRNA reductase
Probab=75.65 E-value=25 Score=38.04 Aligned_cols=145 Identities=15% Similarity=0.217 Sum_probs=82.3
Q ss_pred CCCCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHhcCCCCCCeeccccccccCCCCCCchhhHHHHHHHHHH
Q 014946 56 METAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSAAENPLQIGDLLTRGLGTGGNPLLGEQAAEESKEV 135 (415)
Q Consensus 56 ~~~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~~~~~ki~ig~~~t~G~GaG~n~~~G~~~aee~~e~ 135 (415)
....+|.|||.|..|..++..|...|.. +.+.+|-+.......... ++ |..-.. ...++
T Consensus 264 l~~kkVlVIGAG~mG~~~a~~L~~~G~~--~V~V~nRs~era~~La~~----~~-------g~~i~~--------~~~~d 322 (519)
T PLN00203 264 HASARVLVIGAGKMGKLLVKHLVSKGCT--KMVVVNRSEERVAALREE----FP-------DVEIIY--------KPLDE 322 (519)
T ss_pred CCCCEEEEEeCHHHHHHHHHHHHhCCCC--eEEEEeCCHHHHHHHHHH----hC-------CCceEe--------ecHhh
Confidence 5578999999999999999999988754 456777776655432110 00 100000 12234
Q ss_pred HHHHhcCCCEEEEeccCCCCccCChHHHH-HHHHHHh-------CCc-eEEEEecCCCCchhhhHHHHHHHHHHHHhhCC
Q 014946 136 IANALKGSDLVFITAGMGGGTGSGAAPVV-AQIAKEA-------GYL-TVGVVTYPFSFEGRKRSSQALEAIERLQKNVD 206 (415)
Q Consensus 136 I~~~le~~D~~~I~agLGGGTGSG~apvi-a~~ake~-------g~~-tvavvtlP~~~Eg~~r~~nA~~~l~~L~e~~D 206 (415)
+.+.+.++|+||.+ |+++ -|++ .+.+++. +.+ ++-=+..|-..+..+ ...+
T Consensus 323 l~~al~~aDVVIsA------T~s~-~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvPRdIdp~v-------------~~l~ 382 (519)
T PLN00203 323 MLACAAEADVVFTS------TSSE-TPLFLKEHVEALPPASDTVGGKRLFVDISVPRNVGACV-------------SELE 382 (519)
T ss_pred HHHHHhcCCEEEEc------cCCC-CCeeCHHHHHHhhhcccccCCCeEEEEeCCCCCCcccc-------------ccCC
Confidence 56677899998764 3333 3443 3444442 222 222235677655422 1335
Q ss_pred EEEEEeCchhhhhccccCChH-HHHhhhhhhhhccc
Q 014946 207 TLIVIPNDRLLDITDEQTALQ-DAFLLADDVLRQGV 241 (415)
Q Consensus 207 ~viv~dNd~L~~~~~~~~~i~-~af~~~N~~i~~~i 241 (415)
.+.++|=|.|.++..++.... +....+..+|.+.+
T Consensus 383 ~v~lydiDdL~~i~~~n~~~R~~~~~~Ae~II~ee~ 418 (519)
T PLN00203 383 SARVYNVDDLKEVVAANKEDRLRKAMEAQTIIREES 418 (519)
T ss_pred CCeEEEeccHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 678899999998886554432 13334444444433
No 156
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=75.54 E-value=1.7 Score=38.94 Aligned_cols=38 Identities=24% Similarity=0.459 Sum_probs=28.0
Q ss_pred eEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHhcC
Q 014946 60 KIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQS 100 (415)
Q Consensus 60 ~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~ 100 (415)
||.|||-|..|.-++..|..+| .+|..| ..|.+.++.+
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g-~~V~l~--~~~~~~~~~i 38 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNG-HEVTLW--GRDEEQIEEI 38 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCT-EEEEEE--TSCHHHHHHH
T ss_pred CEEEECcCHHHHHHHHHHHHcC-CEEEEE--eccHHHHHHH
Confidence 7999999999999999999888 335444 4455555433
No 157
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=75.52 E-value=6.2 Score=39.46 Aligned_cols=39 Identities=13% Similarity=0.163 Sum_probs=30.5
Q ss_pred CCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHhc
Q 014946 58 TAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQ 99 (415)
Q Consensus 58 ~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~~ 99 (415)
.|||.|||.|.-|+-++..|.+.|.+ ...+|.+.+..+.
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G~~---V~~~~r~~~~~~~ 42 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKGVP---VRLWARRPEFAAA 42 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCe---EEEEeCCHHHHHH
Confidence 47999999999999999999988743 4556666655443
No 158
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=75.22 E-value=5.7 Score=38.95 Aligned_cols=37 Identities=14% Similarity=0.230 Sum_probs=29.7
Q ss_pred eEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHhc
Q 014946 60 KIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQ 99 (415)
Q Consensus 60 ~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~~ 99 (415)
||.|||.|-.|..++.+|.+.|. +.+.+|.+...++.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~---~V~~~dr~~~~~~~ 37 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGY---QLHVTTIGPEVADE 37 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCC---eEEEEcCCHHHHHH
Confidence 58999999999999999998874 35567777665544
No 159
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=75.03 E-value=5.5 Score=35.94 Aligned_cols=109 Identities=19% Similarity=0.165 Sum_probs=64.7
Q ss_pred CCCCCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHhcCC--CCCCeec--cccccccCCCCCCchhhHHHHH
Q 014946 55 PMETAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSA--AENPLQI--GDLLTRGLGTGGNPLLGEQAAE 130 (415)
Q Consensus 55 ~~~~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~~--~~~ki~i--g~~~t~G~GaG~n~~~G~~~ae 130 (415)
.....+++|+|.|-+|..++..+.+.|. +...+|.....+.+.. ....+.+ +... .+..-|.+.-++.-+
T Consensus 17 ~~~p~~vvv~G~G~vg~gA~~~~~~lGa---~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~~~ 90 (168)
T PF01262_consen 17 GVPPAKVVVTGAGRVGQGAAEIAKGLGA---EVVVPDERPERLRQLESLGAYFIEVDYEDHL---ERKDFDKADYYEHPE 90 (168)
T ss_dssp EE-T-EEEEESTSHHHHHHHHHHHHTT----EEEEEESSHHHHHHHHHTTTEESEETTTTTT---TSB-CCHHHCHHHCC
T ss_pred CCCCeEEEEECCCHHHHHHHHHHhHCCC---EEEeccCCHHHHHhhhcccCceEEEcccccc---cccccchhhhhHHHH
Confidence 3456899999999999999999988774 5778888777665431 1222222 1111 111134444555556
Q ss_pred HHHHHHHHHhcCCCEEEEeccCCCCccCChHHHH--HHHHHHhCC
Q 014946 131 ESKEVIANALKGSDLVFITAGMGGGTGSGAAPVV--AQIAKEAGY 173 (415)
Q Consensus 131 e~~e~I~~~le~~D~~~I~agLGGGTGSG~apvi--a~~ake~g~ 173 (415)
.....+.+.+..+|.+++.+-.-|.- +|.| .+.++++..
T Consensus 91 ~~~~~f~~~i~~~d~vI~~~~~~~~~----~P~lvt~~~~~~m~~ 131 (168)
T PF01262_consen 91 SYESNFAEFIAPADIVIGNGLYWGKR----APRLVTEEMVKSMKP 131 (168)
T ss_dssp HHHHHHHHHHHH-SEEEEHHHBTTSS-------SBEHHHHHTSST
T ss_pred HhHHHHHHHHhhCcEEeeecccCCCC----CCEEEEhHHhhccCC
Confidence 66677888888999887765544332 6764 366777654
No 160
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=75.00 E-value=16 Score=38.88 Aligned_cols=34 Identities=18% Similarity=0.304 Sum_probs=26.4
Q ss_pred CCCCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEEC
Q 014946 56 METAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINT 92 (415)
Q Consensus 56 ~~~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainT 92 (415)
++..+|.|+|+|+.|-.++..|.+.|. +....|.
T Consensus 5 ~~~~~i~v~G~G~sG~s~a~~L~~~G~---~v~~~D~ 38 (498)
T PRK02006 5 LQGPMVLVLGLGESGLAMARWCARHGA---RLRVADT 38 (498)
T ss_pred cCCCEEEEEeecHhHHHHHHHHHHCCC---EEEEEcC
Confidence 345689999999999998888888875 3455664
No 161
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=74.95 E-value=8.2 Score=38.19 Aligned_cols=38 Identities=18% Similarity=0.454 Sum_probs=30.9
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHhc
Q 014946 59 AKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQ 99 (415)
Q Consensus 59 ~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~~ 99 (415)
|+|.|||+|--|..++.+|.+.|. +..+.|-+....+.
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~g~---~v~v~dr~~~~~~~ 38 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRGGH---EVVGYDRNPEAVEA 38 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHCCC---eEEEEECCHHHHHH
Confidence 589999999999999999999874 35667887765543
No 162
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=74.74 E-value=23 Score=38.69 Aligned_cols=41 Identities=20% Similarity=0.216 Sum_probs=29.2
Q ss_pred CCCCCCeEEEEee-CcchHHHHHHHHHcCCCceEEEEEECCHHHH
Q 014946 54 APMETAKIKVVGV-GGGGNNAVNRMIGSGLQGVDFYAINTDSQAL 97 (415)
Q Consensus 54 ~~~~~~~i~vIGv-GgaG~niv~~l~~~~~~~v~~iainTD~~~L 97 (415)
..+++..|+|.|. |+.|..++.+|++.|. +.+++.-+.+.+
T Consensus 76 ~~~~gKvVLVTGATGgIG~aLAr~LLk~G~---~Vval~Rn~ekl 117 (576)
T PLN03209 76 DTKDEDLAFVAGATGKVGSRTVRELLKLGF---RVRAGVRSAQRA 117 (576)
T ss_pred ccCCCCEEEEECCCCHHHHHHHHHHHHCCC---eEEEEeCCHHHH
Confidence 3345677999997 8999999999999874 344444444444
No 163
>KOG2336 consensus Molybdopterin biosynthesis-related protein [Coenzyme transport and metabolism]
Probab=74.26 E-value=22 Score=35.50 Aligned_cols=108 Identities=19% Similarity=0.209 Sum_probs=69.8
Q ss_pred ccCCcccccCCCCCCCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHhcCCCCCCeeccccccccCCCCCCch
Q 014946 44 CRSGNISCSFAPMETAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSAAENPLQIGDLLTRGLGTGGNPL 123 (415)
Q Consensus 44 ~~~~~~~~~~~~~~~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~~~~~ki~ig~~~t~G~GaG~n~~ 123 (415)
.+++-|--.++.-...-++||||||.|+-.++.|-+.|+. .++.+|.|.-.|.+. ||+++-+.. +|-.-
T Consensus 68 LqRMgIV~dYErIR~~aVAiVGvGGVGSV~AeMLTRCGIG--kLlLfDYDkVElANM---NRLFf~P~Q-----aGlsK- 136 (422)
T KOG2336|consen 68 LQRMGIVDDYERIREFAVAIVGVGGVGSVTAEMLTRCGIG--KLLLFDYDKVELANM---NRLFFQPDQ-----AGLSK- 136 (422)
T ss_pred HHHhcchhhHHHHhhheeEEEecCchhHHHHHHHHhcCcc--eEEEeecchhhhhcc---cccccCccc-----ccchH-
Confidence 3444444455555566799999999999999999999984 688999999888764 677664421 11000
Q ss_pred hhHHHHHHHHHHHHHHhcCCCEEEEeccCCCCccCChHHHHHHHHH
Q 014946 124 LGEQAAEESKEVIANALKGSDLVFITAGMGGGTGSGAAPVVAQIAK 169 (415)
Q Consensus 124 ~G~~~aee~~e~I~~~le~~D~~~I~agLGGGTGSG~apvia~~ak 169 (415)
-++|..-...| +-|.+|=+|.+.=-|=-++-..+.++.+
T Consensus 137 --v~AA~~TL~~i-----NPDV~iE~hn~NITTvenFd~F~~~is~ 175 (422)
T KOG2336|consen 137 --VDAAVQTLAEI-----NPDVVIEVHNYNITTVENFDTFTDRISN 175 (422)
T ss_pred --HHHHHHHHHhc-----CCCeEEEEeecceeeehhHHHHHHHhhc
Confidence 01222211111 5688888888776666666666655544
No 164
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=74.22 E-value=37 Score=32.14 Aligned_cols=41 Identities=22% Similarity=0.345 Sum_probs=29.1
Q ss_pred CCCCCCeEEEEee-CcchHHHHHHHHHcCCCceEEEEEECCHHHH
Q 014946 54 APMETAKIKVVGV-GGGGNNAVNRMIGSGLQGVDFYAINTDSQAL 97 (415)
Q Consensus 54 ~~~~~~~i~vIGv-GgaG~niv~~l~~~~~~~v~~iainTD~~~L 97 (415)
+..+.++|+|+|. |+.|..++.+|.+.|. +.+++.-+...+
T Consensus 13 ~~~~~~~ilItGasG~iG~~l~~~L~~~g~---~V~~~~R~~~~~ 54 (251)
T PLN00141 13 ENVKTKTVFVAGATGRTGKRIVEQLLAKGF---AVKAGVRDVDKA 54 (251)
T ss_pred ccccCCeEEEECCCcHHHHHHHHHHHhCCC---EEEEEecCHHHH
Confidence 4455789999996 8899999999998763 344443343333
No 165
>PTZ00245 ubiquitin activating enzyme; Provisional
Probab=73.81 E-value=13 Score=36.73 Aligned_cols=42 Identities=12% Similarity=0.242 Sum_probs=34.5
Q ss_pred CCCCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHhc
Q 014946 56 METAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQ 99 (415)
Q Consensus 56 ~~~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~~ 99 (415)
..+.+++|||+||-|+-++.+|...|+. .+..+|.|.-.+..
T Consensus 24 L~~SrVLVVG~GGLGsEVAKnLaLAGVG--sItIvDdD~Ve~SN 65 (287)
T PTZ00245 24 LMHTSVALHGVAGAAAEAAKNLVLAGVR--AVAVADEGLVTDAD 65 (287)
T ss_pred HhhCeEEEECCCchHHHHHHHHHHcCCC--eEEEecCCccchhh
Confidence 3478899999999999999999999986 56678887665544
No 166
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=73.70 E-value=17 Score=36.36 Aligned_cols=40 Identities=20% Similarity=0.361 Sum_probs=31.7
Q ss_pred CCCCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHH
Q 014946 56 METAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQAL 97 (415)
Q Consensus 56 ~~~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L 97 (415)
...++|.|||.|..|..++..+...+.. +.+.+|-+....
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~--~V~v~~r~~~ra 215 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGVA--EITIANRTYERA 215 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCCC--EEEEEeCCHHHH
Confidence 4678999999999999999998876643 466778876543
No 167
>PRK07877 hypothetical protein; Provisional
Probab=73.64 E-value=9.7 Score=42.73 Aligned_cols=44 Identities=20% Similarity=0.297 Sum_probs=35.5
Q ss_pred CCCCCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHhcC
Q 014946 55 PMETAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQS 100 (415)
Q Consensus 55 ~~~~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~ 100 (415)
...+.+|.|||+| .|+.++.+|...|+. -++..+|-|.-.+.++
T Consensus 104 ~L~~~~V~IvG~G-lGs~~a~~LaraGvv-G~l~lvD~D~ve~sNL 147 (722)
T PRK07877 104 RLGRLRIGVVGLS-VGHAIAHTLAAEGLC-GELRLADFDTLELSNL 147 (722)
T ss_pred HHhcCCEEEEEec-HHHHHHHHHHHccCC-CeEEEEcCCEEccccc
Confidence 3457899999997 899999999999852 2577889888777665
No 168
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=73.62 E-value=7.8 Score=38.91 Aligned_cols=93 Identities=23% Similarity=0.371 Sum_probs=53.2
Q ss_pred CCCCeEEEEeeCcchHHHHHHHHHcCCCceEEEE-EECCHH--HHhcCCCCCCeeccccccccCCCCCCchhhHHHHHHH
Q 014946 56 METAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYA-INTDSQ--ALLQSAAENPLQIGDLLTRGLGTGGNPLLGEQAAEES 132 (415)
Q Consensus 56 ~~~~~i~vIGvGgaG~niv~~l~~~~~~~v~~ia-inTD~~--~L~~~~~~~ki~ig~~~t~G~GaG~n~~~G~~~aee~ 132 (415)
|+++|+.|||.|..|...+..+.+. ++++..+ ++.|.. .+.... + +|.- ..-++
T Consensus 2 m~klrVAIIGtG~IGt~hm~~l~~~--~~velvAVvdid~es~gla~A~---~----------~Gi~--------~~~~~ 58 (302)
T PRK08300 2 MSKLKVAIIGSGNIGTDLMIKILRS--EHLEPGAMVGIDPESDGLARAR---R----------LGVA--------TSAEG 58 (302)
T ss_pred CCCCeEEEEcCcHHHHHHHHHHhcC--CCcEEEEEEeCChhhHHHHHHH---H----------cCCC--------cccCC
Confidence 5689999999999999877777763 4455543 455553 332210 0 1110 00122
Q ss_pred HHHHHHH--hcCCCEEEEeccCCCCccCChHHHHHHHHHHhCCceEE
Q 014946 133 KEVIANA--LKGSDLVFITAGMGGGTGSGAAPVVAQIAKEAGYLTVG 177 (415)
Q Consensus 133 ~e~I~~~--le~~D~~~I~agLGGGTGSG~apvia~~ake~g~~tva 177 (415)
.+.+.+. +++.|++|++. |...-.-.+..+.+.|+.++-
T Consensus 59 ie~LL~~~~~~dIDiVf~AT------~a~~H~e~a~~a~eaGk~VID 99 (302)
T PRK08300 59 IDGLLAMPEFDDIDIVFDAT------SAGAHVRHAAKLREAGIRAID 99 (302)
T ss_pred HHHHHhCcCCCCCCEEEECC------CHHHHHHHHHHHHHcCCeEEE
Confidence 3333332 35789999974 344444466777778876553
No 169
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=73.18 E-value=36 Score=35.08 Aligned_cols=127 Identities=15% Similarity=0.134 Sum_probs=68.6
Q ss_pred CCCeEEEEeeCcchHHHHHHHHHcCC------CceEEEEEECC------HHHHhcCCCCCCeeccccccccCCCCCCch-
Q 014946 57 ETAKIKVVGVGGGGNNAVNRMIGSGL------QGVDFYAINTD------SQALLQSAAENPLQIGDLLTRGLGTGGNPL- 123 (415)
Q Consensus 57 ~~~~i~vIGvGgaG~niv~~l~~~~~------~~v~~iainTD------~~~L~~~~~~~ki~ig~~~t~G~GaG~n~~- 123 (415)
+++||.|||-|.-|..++..+.+++. ..|..|..|.+ .+.+++-....+++-|-.+....=+-.|.+
T Consensus 10 ~~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~e 89 (365)
T PTZ00345 10 GPLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKE 89 (365)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHH
Confidence 35899999999999999999988762 35889988875 334443222223332222211111111221
Q ss_pred -----------hhHHHHHHHHHHHHH--HhcCC-CEEEEeccCCCCccCChHHHHHHHHHH-hCCceEEEEecCCCCc
Q 014946 124 -----------LGEQAAEESKEVIAN--ALKGS-DLVFITAGMGGGTGSGAAPVVAQIAKE-AGYLTVGVVTYPFSFE 186 (415)
Q Consensus 124 -----------~G~~~aee~~e~I~~--~le~~-D~~~I~agLGGGTGSG~apvia~~ake-~g~~tvavvtlP~~~E 186 (415)
+--+..++..++++. .+..- =.+-++.|+--.||... .+.++.+| ++. .++++.=|...+
T Consensus 90 av~~aDiIvlAVPsq~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~~t~~~~--~~sevi~e~l~~-~~~~LsGPs~A~ 164 (365)
T PTZ00345 90 AVEDADLLIFVIPHQFLESVLSQIKENNNLKKHARAISLTKGIIVENGKPV--LCSDVIEEELGI-PCCALSGANVAN 164 (365)
T ss_pred HHhcCCEEEEEcChHHHHHHHHHhccccccCCCCEEEEEeCCcccCCCCcc--cHHHHHHHHhCC-CeEEEECCCHHH
Confidence 112344555556654 33321 14556778876666321 23444444 233 456666676443
No 170
>PRK08818 prephenate dehydrogenase; Provisional
Probab=72.98 E-value=5.8 Score=40.90 Aligned_cols=33 Identities=12% Similarity=0.146 Sum_probs=26.9
Q ss_pred CCeEEEEee-CcchHHHHHHHHHcCCCceEEEEEEC
Q 014946 58 TAKIKVVGV-GGGGNNAVNRMIGSGLQGVDFYAINT 92 (415)
Q Consensus 58 ~~~i~vIGv-GgaG~niv~~l~~~~~~~v~~iainT 92 (415)
.++|.|||+ |.-|+.++..|.+.. +...+.+|.
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~~--~~~V~g~D~ 37 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTRM--QLEVIGHDP 37 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcC--CCEEEEEcC
Confidence 578999999 999999999998752 456667765
No 171
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=72.92 E-value=8 Score=42.38 Aligned_cols=88 Identities=13% Similarity=0.211 Sum_probs=58.2
Q ss_pred CCCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHhcCC-CCCCeeccccccccCCCCCCchhhHHHHHHHHHH
Q 014946 57 ETAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSA-AENPLQIGDLLTRGLGTGGNPLLGEQAAEESKEV 135 (415)
Q Consensus 57 ~~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~~-~~~ki~ig~~~t~G~GaG~n~~~G~~~aee~~e~ 135 (415)
.+.++.|+|.|.-|-.+++.|.+++. +++++|.|++..+... ...++..|. +.++ +-
T Consensus 399 ~~~~vII~G~Gr~G~~va~~L~~~g~---~vvvID~d~~~v~~~~~~g~~v~~GD--------at~~-----------~~ 456 (601)
T PRK03659 399 DKPQVIIVGFGRFGQVIGRLLMANKM---RITVLERDISAVNLMRKYGYKVYYGD--------ATQL-----------EL 456 (601)
T ss_pred ccCCEEEecCchHHHHHHHHHHhCCC---CEEEEECCHHHHHHHHhCCCeEEEee--------CCCH-----------HH
Confidence 35789999999999999999988775 5899999999877542 233444442 1122 22
Q ss_pred HHH-HhcCCCEEEEeccCCCCccCChHH-HHHHHHHHhC
Q 014946 136 IAN-ALKGSDLVFITAGMGGGTGSGAAP-VVAQIAKEAG 172 (415)
Q Consensus 136 I~~-~le~~D~~~I~agLGGGTGSG~ap-via~~ake~g 172 (415)
+++ -++++|+++++. +.-... .+++.+|++.
T Consensus 457 L~~agi~~A~~vv~~~------~d~~~n~~i~~~~r~~~ 489 (601)
T PRK03659 457 LRAAGAEKAEAIVITC------NEPEDTMKIVELCQQHF 489 (601)
T ss_pred HHhcCCccCCEEEEEe------CCHHHHHHHHHHHHHHC
Confidence 222 256899887763 233333 3667788764
No 172
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=72.61 E-value=21 Score=38.51 Aligned_cols=43 Identities=26% Similarity=0.261 Sum_probs=35.9
Q ss_pred CCCCCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHhcC
Q 014946 55 PMETAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQS 100 (415)
Q Consensus 55 ~~~~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~ 100 (415)
.....|++|+|.|.+|..++..+...|. +.+++|.+...++..
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA---~V~a~D~~~~rle~a 204 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLGA---IVRAFDTRPEVAEQV 204 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCC---EEEEEeCCHHHHHHH
Confidence 3458899999999999999999888875 478999988877653
No 173
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=72.54 E-value=6.6 Score=38.91 Aligned_cols=40 Identities=23% Similarity=0.365 Sum_probs=32.7
Q ss_pred CCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHh
Q 014946 58 TAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALL 98 (415)
Q Consensus 58 ~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~ 98 (415)
.++|.|+|+|.-|+.++..|.+.|.. +..+-.|-+...+.
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~-v~i~g~d~~~~~~~ 42 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLV-VRIIGRDRSAATLK 42 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCe-EEEEeecCcHHHHH
Confidence 57899999999999999999999864 66777776665554
No 174
>PRK08507 prephenate dehydrogenase; Validated
Probab=72.40 E-value=6.2 Score=38.44 Aligned_cols=40 Identities=23% Similarity=0.311 Sum_probs=33.2
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHhc
Q 014946 59 AKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQ 99 (415)
Q Consensus 59 ~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~~ 99 (415)
|||.|||.|..|+.++..|.+.|. .++.+.+|.+.+.++.
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~g~-~~~v~~~d~~~~~~~~ 40 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEKGL-ISKVYGYDHNELHLKK 40 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhcCC-CCEEEEEcCCHHHHHH
Confidence 589999999999999999998885 3567788888776653
No 175
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=72.35 E-value=39 Score=34.38 Aligned_cols=78 Identities=22% Similarity=0.214 Sum_probs=46.0
Q ss_pred CCCeEEEEee-CcchHHHHHHHHHcCCCceEEEEEECCHH-HHhcCCCCCCeeccccccccCCCCCCchhhHHHHHHHHH
Q 014946 57 ETAKIKVVGV-GGGGNNAVNRMIGSGLQGVDFYAINTDSQ-ALLQSAAENPLQIGDLLTRGLGTGGNPLLGEQAAEESKE 134 (415)
Q Consensus 57 ~~~~i~vIGv-GgaG~niv~~l~~~~~~~v~~iainTD~~-~L~~~~~~~ki~ig~~~t~G~GaG~n~~~G~~~aee~~e 134 (415)
.+|+|+|.|- |..|.+++.+|.+.|. +.++++-... .+....-...+..+. . .+.+
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~---~V~~v~r~~~~~~~~~~~~~~~~~~D-----------l--------~d~~ 77 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAEGH---YIIASDWKKNEHMSEDMFCHEFHLVD-----------L--------RVME 77 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhCCC---EEEEEEeccccccccccccceEEECC-----------C--------CCHH
Confidence 5789999998 9999999999998874 3455543211 111100001111111 1 1224
Q ss_pred HHHHHhcCCCEEEEeccCCCCc
Q 014946 135 VIANALKGSDLVFITAGMGGGT 156 (415)
Q Consensus 135 ~I~~~le~~D~~~I~agLGGGT 156 (415)
.+.+.++++|.||-+++..++.
T Consensus 78 ~~~~~~~~~D~Vih~Aa~~~~~ 99 (370)
T PLN02695 78 NCLKVTKGVDHVFNLAADMGGM 99 (370)
T ss_pred HHHHHHhCCCEEEEcccccCCc
Confidence 4556667899998888765543
No 176
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=72.03 E-value=6.1 Score=36.95 Aligned_cols=42 Identities=17% Similarity=0.388 Sum_probs=34.4
Q ss_pred CCCCCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHhc
Q 014946 55 PMETAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQ 99 (415)
Q Consensus 55 ~~~~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~~ 99 (415)
...++++.|+|+|..|..++.+|.+.|. +.+++|.+...+..
T Consensus 25 ~l~gk~v~I~G~G~vG~~~A~~L~~~G~---~Vvv~D~~~~~~~~ 66 (200)
T cd01075 25 SLEGKTVAVQGLGKVGYKLAEHLLEEGA---KLIVADINEEAVAR 66 (200)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCC---EEEEEcCCHHHHHH
Confidence 3457899999999999999999998874 56788888776654
No 177
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=71.98 E-value=15 Score=34.27 Aligned_cols=81 Identities=20% Similarity=0.323 Sum_probs=42.6
Q ss_pred eEEEEeeCcchH--HHHHHHH-HcCCCceEEEEEECCHHHHhcCCCCCCeeccccccccCCCCCCchhhHHHHHHHHHHH
Q 014946 60 KIKVVGVGGGGN--NAVNRMI-GSGLQGVDFYAINTDSQALLQSAAENPLQIGDLLTRGLGTGGNPLLGEQAAEESKEVI 136 (415)
Q Consensus 60 ~i~vIGvGgaG~--niv~~l~-~~~~~~v~~iainTD~~~L~~~~~~~ki~ig~~~t~G~GaG~n~~~G~~~aee~~e~I 136 (415)
||.+||-|..-- .+..-+. ...+..-+.+.+|.|.+.|+.+.. +.+...+-.|. ++.+ +.-...
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~-----~~~~~~~~~~~--~~~v------~~ttd~ 67 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVER-----LARRMVEEAGA--DLKV------EATTDR 67 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHH-----HHHHHHHHCTT--SSEE------EEESSH
T ss_pred CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHH-----HHHHHHHhcCC--CeEE------EEeCCH
Confidence 789999887654 3333333 235666789999999999874310 00000000111 1100 011224
Q ss_pred HHHhcCCCEEEEeccCC
Q 014946 137 ANALKGSDLVFITAGMG 153 (415)
Q Consensus 137 ~~~le~~D~~~I~agLG 153 (415)
+++++++|.|+...-.|
T Consensus 68 ~eAl~gADfVi~~irvG 84 (183)
T PF02056_consen 68 REALEGADFVINQIRVG 84 (183)
T ss_dssp HHHHTTESEEEE---TT
T ss_pred HHHhCCCCEEEEEeeec
Confidence 77899999999988776
No 178
>PRK05442 malate dehydrogenase; Provisional
Probab=71.98 E-value=16 Score=36.95 Aligned_cols=36 Identities=19% Similarity=0.347 Sum_probs=28.6
Q ss_pred CCCeEEEEee-CcchHHHHHHHHHcCCCc----eEEEEEEC
Q 014946 57 ETAKIKVVGV-GGGGNNAVNRMIGSGLQG----VDFYAINT 92 (415)
Q Consensus 57 ~~~~i~vIGv-GgaG~niv~~l~~~~~~~----v~~iainT 92 (415)
+..||.|||. |..|..++-.|...++.+ .+.+.+|.
T Consensus 3 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi 43 (326)
T PRK05442 3 APVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEI 43 (326)
T ss_pred CCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEec
Confidence 5679999999 999999998888766532 36777776
No 179
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=71.91 E-value=41 Score=35.00 Aligned_cols=33 Identities=18% Similarity=0.275 Sum_probs=27.4
Q ss_pred CCeEEEEee-CcchHHHHHHHHHcCCCc----eEEEEE
Q 014946 58 TAKIKVVGV-GGGGNNAVNRMIGSGLQG----VDFYAI 90 (415)
Q Consensus 58 ~~~i~vIGv-GgaG~niv~~l~~~~~~~----v~~iai 90 (415)
..||.|||. |..|.+++-.|...++-+ +....+
T Consensus 44 p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~ 81 (387)
T TIGR01757 44 TVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLL 81 (387)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEe
Confidence 589999999 999999999999888754 455455
No 180
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=71.89 E-value=20 Score=30.50 Aligned_cols=100 Identities=21% Similarity=0.306 Sum_probs=52.4
Q ss_pred eEEEEe----eCcchHHHHHHHHHcCCCceEEEEEECCHHHHhcCCCCCCee-ccccccccCCCCCCchhhHHHHHHHHH
Q 014946 60 KIKVVG----VGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSAAENPLQ-IGDLLTRGLGTGGNPLLGEQAAEESKE 134 (415)
Q Consensus 60 ~i~vIG----vGgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~~~~~ki~-ig~~~t~G~GaG~n~~~G~~~aee~~e 134 (415)
+|+||| -+..|..++++|.+.| .+.+.||-..+.+...+.-..+. ++... +- ..-.+..+...+..+
T Consensus 2 siAVvGaS~~~~~~g~~v~~~l~~~G---~~v~~Vnp~~~~i~G~~~y~sl~e~p~~i-Dl----avv~~~~~~~~~~v~ 73 (116)
T PF13380_consen 2 SIAVVGASDNPGKFGYRVLRNLKAAG---YEVYPVNPKGGEILGIKCYPSLAEIPEPI-DL----AVVCVPPDKVPEIVD 73 (116)
T ss_dssp EEEEET--SSTTSHHHHHHHHHHHTT----EEEEESTTCSEETTEE-BSSGGGCSST--SE----EEE-S-HHHHHHHHH
T ss_pred EEEEEcccCCCCChHHHHHHHHHhCC---CEEEEECCCceEECcEEeeccccCCCCCC-CE----EEEEcCHHHHHHHHH
Confidence 589999 5777999999999955 56889988655443221111111 00000 00 000112233344444
Q ss_pred HHHHHhcCCCEEEEeccCCCCccCChHHHHHHHHHHhCCceE
Q 014946 135 VIANALKGSDLVFITAGMGGGTGSGAAPVVAQIAKEAGYLTV 176 (415)
Q Consensus 135 ~I~~~le~~D~~~I~agLGGGTGSG~apvia~~ake~g~~tv 176 (415)
++.+. ++..+++..| ...+-+.+.+++.|+.++
T Consensus 74 ~~~~~--g~~~v~~~~g-------~~~~~~~~~a~~~gi~vi 106 (116)
T PF13380_consen 74 EAAAL--GVKAVWLQPG-------AESEELIEAAREAGIRVI 106 (116)
T ss_dssp HHHHH--T-SEEEE-TT-------S--HHHHHHHHHTT-EEE
T ss_pred HHHHc--CCCEEEEEcc-------hHHHHHHHHHHHcCCEEE
Confidence 44333 6888888877 456778888888877654
No 181
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=71.68 E-value=8.6 Score=38.03 Aligned_cols=38 Identities=21% Similarity=0.402 Sum_probs=30.7
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHhc
Q 014946 59 AKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQ 99 (415)
Q Consensus 59 ~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~~ 99 (415)
.||.|||.|--|..++..|.+.|. +.+++|-+...++.
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~---~V~v~d~~~~~~~~ 39 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGH---QLQVFDVNPQAVDA 39 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCC---eEEEEcCCHHHHHH
Confidence 379999999999999999998874 35677777666544
No 182
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=71.60 E-value=11 Score=37.30 Aligned_cols=40 Identities=18% Similarity=0.291 Sum_probs=32.1
Q ss_pred CCCCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHh
Q 014946 56 METAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALL 98 (415)
Q Consensus 56 ~~~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~ 98 (415)
....++.|||.|..|..++..|...|. +.+.+|.+.+.+.
T Consensus 149 l~gk~v~IiG~G~iG~avA~~L~~~G~---~V~v~~R~~~~~~ 188 (287)
T TIGR02853 149 IHGSNVMVLGFGRTGMTIARTFSALGA---RVFVGARSSADLA 188 (287)
T ss_pred CCCCEEEEEcChHHHHHHHHHHHHCCC---EEEEEeCCHHHHH
Confidence 346789999999999999999988874 4667787766554
No 183
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=71.27 E-value=11 Score=39.29 Aligned_cols=40 Identities=20% Similarity=0.321 Sum_probs=30.2
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHhcC
Q 014946 59 AKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQS 100 (415)
Q Consensus 59 ~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~ 100 (415)
+||+|||.|+.|.-++..|.+++- .+....+.....+.++
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d--~~V~iAdRs~~~~~~i 41 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGD--GEVTIADRSKEKCARI 41 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCC--ceEEEEeCCHHHHHHH
Confidence 789999999999999999998873 4455555555555444
No 184
>PF06908 DUF1273: Protein of unknown function (DUF1273); InterPro: IPR024718 This entry represents a functionally uncharacterised domain.; PDB: 2NX2_A.
Probab=71.14 E-value=12 Score=34.65 Aligned_cols=96 Identities=17% Similarity=0.251 Sum_probs=49.7
Q ss_pred HHHHHHHHHhcCCCEEEEeccCCCCccCChHHHHHHHHHHhCCceEEEEecCCCCchhhhHHHHHHHHHHHHhhCCEEEE
Q 014946 131 ESKEVIANALKGSDLVFITAGMGGGTGSGAAPVVAQIAKEAGYLTVGVVTYPFSFEGRKRSSQALEAIERLQKNVDTLIV 210 (415)
Q Consensus 131 e~~e~I~~~le~~D~~~I~agLGGGTGSG~apvia~~ake~g~~tvavvtlP~~~Eg~~r~~nA~~~l~~L~e~~D~viv 210 (415)
...++|++++++ ..-.+..|+.-|.-.=++-++.++-++|+-+.++ +.+||..-+..-......-+..|.+.+|.+++
T Consensus 30 ~L~~~i~~lie~-G~~~fi~GgalG~D~waae~vl~LK~~yp~ikL~-~v~Pf~~q~~~W~~~~q~~y~~il~~aD~v~~ 107 (177)
T PF06908_consen 30 ALKKQIIELIEE-GVRWFITGGALGVDLWAAEVVLELKKEYPEIKLA-LVLPFENQGNNWNEANQERYQSILEQADFVVV 107 (177)
T ss_dssp HHHHHHHHHHTT-T--EEEE---TTHHHHHHHHHHTTTTT-TT-EEE-EEESSB-TTTTS-HHHHHHHHHHHHH-SEEEE
T ss_pred HHHHHHHHHHHC-CCCEEEECCcccHHHHHHHHHHHHHhhhhheEEE-EEEcccchhhcCCHHHHHHHHHHHHhCCEEEE
Confidence 344557777775 2223333444344333445555555556645443 34688655544444566778899999999999
Q ss_pred EeCchhhhhccccCChHHHHhhhhhh
Q 014946 211 IPNDRLLDITDEQTALQDAFLLADDV 236 (415)
Q Consensus 211 ~dNd~L~~~~~~~~~i~~af~~~N~~ 236 (415)
+..+.... ...|..-|+.
T Consensus 108 vs~~~Y~~--------~~~~~~rn~f 125 (177)
T PF06908_consen 108 VSERPYYS--------PGQLQKRNRF 125 (177)
T ss_dssp SSSSB-----------HHHHHHHHHH
T ss_pred ccCCCCCC--------HHHHHHHhHH
Confidence 97764332 2355555655
No 185
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=71.05 E-value=16 Score=34.26 Aligned_cols=81 Identities=20% Similarity=0.215 Sum_probs=48.3
Q ss_pred CeEEEEee-CcchHHHHHHHHHcCCCceEEEEEECCHHHHhcCCC--CCCee-ccccccccCCCCCCchhhHHHHHHHHH
Q 014946 59 AKIKVVGV-GGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSAA--ENPLQ-IGDLLTRGLGTGGNPLLGEQAAEESKE 134 (415)
Q Consensus 59 ~~i~vIGv-GgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~~~--~~ki~-ig~~~t~G~GaG~n~~~G~~~aee~~e 134 (415)
|++.|+|. |+.|..++.+|.+.|. +.+.++.+...++.+.. ..++. +- .|... .+..++..+
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~---~V~~~~r~~~~~~~~~~~~~~~~~~~~----------~Dl~~-~~~i~~~~~ 66 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGH---KVIATGRRQERLQELKDELGDNLYIAQ----------LDVRN-RAAIEEMLA 66 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC---EEEEEECCHHHHHHHHHHhccceEEEE----------ecCCC-HHHHHHHHH
Confidence 57899996 7789999999998874 46667776655543211 11111 10 01111 123344556
Q ss_pred HHHHHhcCCCEEEEeccCC
Q 014946 135 VIANALKGSDLVFITAGMG 153 (415)
Q Consensus 135 ~I~~~le~~D~~~I~agLG 153 (415)
++.+...++|+++..+|..
T Consensus 67 ~~~~~~~~id~vi~~ag~~ 85 (248)
T PRK10538 67 SLPAEWRNIDVLVNNAGLA 85 (248)
T ss_pred HHHHHcCCCCEEEECCCcc
Confidence 6666677899988777643
No 186
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=71.00 E-value=91 Score=30.90 Aligned_cols=80 Identities=20% Similarity=0.247 Sum_probs=46.7
Q ss_pred CCCeEEEEee-CcchHHHHHHHHHcCCCceEEEEEECCHHHHhcC---CCCCCeeccccccccCCCCCCchhhHHHHHHH
Q 014946 57 ETAKIKVVGV-GGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQS---AAENPLQIGDLLTRGLGTGGNPLLGEQAAEES 132 (415)
Q Consensus 57 ~~~~i~vIGv-GgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~---~~~~ki~ig~~~t~G~GaG~n~~~G~~~aee~ 132 (415)
..++|+|.|- |+.|..++.+|.+.+ ...+.++++-|......+ ....++.+= . +|. .+
T Consensus 3 ~~k~vLVTGatG~IG~~l~~~L~~~g-~~~~V~~~~r~~~~~~~~~~~~~~~~~~~v----~-----~Dl--------~d 64 (324)
T TIGR03589 3 NNKSILITGGTGSFGKAFISRLLENY-NPKKIIIYSRDELKQWEMQQKFPAPCLRFF----I-----GDV--------RD 64 (324)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHhC-CCcEEEEEcCChhHHHHHHHHhCCCcEEEE----E-----ccC--------CC
Confidence 4578999996 889999999999875 223455565443322211 001111110 0 011 12
Q ss_pred HHHHHHHhcCCCEEEEeccCCC
Q 014946 133 KEVIANALKGSDLVFITAGMGG 154 (415)
Q Consensus 133 ~e~I~~~le~~D~~~I~agLGG 154 (415)
.+.+.+.++++|.||-+||+..
T Consensus 65 ~~~l~~~~~~iD~Vih~Ag~~~ 86 (324)
T TIGR03589 65 KERLTRALRGVDYVVHAAALKQ 86 (324)
T ss_pred HHHHHHHHhcCCEEEECcccCC
Confidence 3456667778999998888754
No 187
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=70.90 E-value=5.8 Score=39.44 Aligned_cols=41 Identities=24% Similarity=0.327 Sum_probs=33.1
Q ss_pred CCCCCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHH
Q 014946 55 PMETAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQAL 97 (415)
Q Consensus 55 ~~~~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L 97 (415)
|++.|||.|||.|.-|+-+.-+|.+.| .+|.+++-+. .+++
T Consensus 2 ~~~~m~I~IiG~GaiG~~lA~~L~~~g-~~V~~~~r~~-~~~~ 42 (313)
T PRK06249 2 DSETPRIGIIGTGAIGGFYGAMLARAG-FDVHFLLRSD-YEAV 42 (313)
T ss_pred CCcCcEEEEECCCHHHHHHHHHHHHCC-CeEEEEEeCC-HHHH
Confidence 567799999999999999999999988 4588777654 3443
No 188
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=70.09 E-value=48 Score=33.10 Aligned_cols=33 Identities=27% Similarity=0.413 Sum_probs=27.0
Q ss_pred CCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEEC
Q 014946 58 TAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINT 92 (415)
Q Consensus 58 ~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainT 92 (415)
.+||.|||.|-.|.-++-.+...|.. +.+.+|.
T Consensus 1 ~~KV~VIGaG~vG~~iA~~la~~g~~--~VvlvDi 33 (305)
T TIGR01763 1 RKKISVIGAGFVGATTAFRLAEKELA--DLVLLDV 33 (305)
T ss_pred CCEEEEECcCHHHHHHHHHHHHcCCC--eEEEEeC
Confidence 36999999999999999999888753 4666666
No 189
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=69.94 E-value=18 Score=37.83 Aligned_cols=83 Identities=24% Similarity=0.301 Sum_probs=47.1
Q ss_pred CeEEEEeeCcchHH--HHHHHHHc-CCCceEEEEEECCHHHHhcCCCCCCeeccccccccCCCCCCchhhHHHHHHHHHH
Q 014946 59 AKIKVVGVGGGGNN--AVNRMIGS-GLQGVDFYAINTDSQALLQSAAENPLQIGDLLTRGLGTGGNPLLGEQAAEESKEV 135 (415)
Q Consensus 59 ~~i~vIGvGgaG~n--iv~~l~~~-~~~~v~~iainTD~~~L~~~~~~~ki~ig~~~t~G~GaG~n~~~G~~~aee~~e~ 135 (415)
+||.|||.|..|.. ++..+... .+.+.+.+.+|.|.+.++......+..+ ...+...+. .....
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~-----~~~~~~~~I--------~~ttD 67 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIV-----EELGAPLKI--------EATTD 67 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHH-----HhcCCCeEE--------EEeCC
Confidence 58999999887775 33345433 5555678888999887765321100000 000000000 01122
Q ss_pred HHHHhcCCCEEEEeccCCC
Q 014946 136 IANALKGSDLVFITAGMGG 154 (415)
Q Consensus 136 I~~~le~~D~~~I~agLGG 154 (415)
+.+++++||.|+++.+.||
T Consensus 68 ~~eal~~AD~Vi~ai~~~~ 86 (423)
T cd05297 68 RREALDGADFVINTIQVGG 86 (423)
T ss_pred HHHHhcCCCEEEEeeEecC
Confidence 4677899999999988654
No 190
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=69.52 E-value=78 Score=30.37 Aligned_cols=93 Identities=10% Similarity=0.017 Sum_probs=52.0
Q ss_pred eEEEEee-CcchHHHHHHHHHcCCCceEEEEEECCHHHHhcCCCCCCeeccccccccCCCCCCchhhHHHHHHHHHHHHH
Q 014946 60 KIKVVGV-GGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSAAENPLQIGDLLTRGLGTGGNPLLGEQAAEESKEVIAN 138 (415)
Q Consensus 60 ~i~vIGv-GgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~~~~~ki~ig~~~t~G~GaG~n~~~G~~~aee~~e~I~~ 138 (415)
+|+|+|. |.-|..++.+|.+.|.+ |. ++.-|.+.... .+.. ..-.|+ .+.+.+.+
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~~-V~--~~~R~~~~~~~--------~~~~-----~~~~d~--------~d~~~l~~ 56 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASVP-FL--VASRSSSSSAG--------PNEK-----HVKFDW--------LDEDTWDN 56 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCCc-EE--EEeCCCccccC--------CCCc-----cccccC--------CCHHHHHH
Confidence 5889998 99999999999998754 44 44444332211 0110 111122 23344555
Q ss_pred Hh------cC-CCEEEEeccCCCCccCChHHHHHHHHHHhCCceEE
Q 014946 139 AL------KG-SDLVFITAGMGGGTGSGAAPVVAQIAKEAGYLTVG 177 (415)
Q Consensus 139 ~l------e~-~D~~~I~agLGGGTGSG~apvia~~ake~g~~tva 177 (415)
++ ++ +|.+|++++.....- -....+.+.+++.|...|.
T Consensus 57 a~~~~~~~~g~~d~v~~~~~~~~~~~-~~~~~~i~aa~~~gv~~~V 101 (285)
T TIGR03649 57 PFSSDDGMEPEISAVYLVAPPIPDLA-PPMIKFIDFARSKGVRRFV 101 (285)
T ss_pred HHhcccCcCCceeEEEEeCCCCCChh-HHHHHHHHHHHHcCCCEEE
Confidence 55 56 999988765432110 0122256778888875443
No 191
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=69.47 E-value=16 Score=37.28 Aligned_cols=41 Identities=15% Similarity=0.293 Sum_probs=34.2
Q ss_pred ccccCCCCCCCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEEC
Q 014946 49 ISCSFAPMETAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINT 92 (415)
Q Consensus 49 ~~~~~~~~~~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainT 92 (415)
-+|++......+|.|||.|.-|..++.+|...|+ +.++.|.
T Consensus 7 ~d~~~~~LkgKtVGIIG~GsIG~amA~nL~d~G~---~ViV~~r 47 (335)
T PRK13403 7 KDANVELLQGKTVAVIGYGSQGHAQAQNLRDSGV---EVVVGVR 47 (335)
T ss_pred ccCChhhhCcCEEEEEeEcHHHHHHHHHHHHCcC---EEEEEEC
Confidence 3577888889999999999999999999998885 4556664
No 192
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=69.24 E-value=19 Score=37.94 Aligned_cols=83 Identities=17% Similarity=0.187 Sum_probs=49.4
Q ss_pred CeEEEEeeCcchH-HHHHHHHHc--CCCceEEEEEECCHHHHhcCCCCCCeeccccccccCCCCCCchhhHHHHHHHHHH
Q 014946 59 AKIKVVGVGGGGN-NAVNRMIGS--GLQGVDFYAINTDSQALLQSAAENPLQIGDLLTRGLGTGGNPLLGEQAAEESKEV 135 (415)
Q Consensus 59 ~~i~vIGvGgaG~-niv~~l~~~--~~~~v~~iainTD~~~L~~~~~~~ki~ig~~~t~G~GaG~n~~~G~~~aee~~e~ 135 (415)
|||.+||-|+.=. .++.-|+.. .+..-+.+.+|.|...|+.+.. +.+...+-.|+ ++.+ +.-..
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~-----l~~~~~~~~g~--~~~v------~~Ttd 67 (437)
T cd05298 1 FKIVIAGGGSTYTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAE-----AVKILFKENYP--EIKF------VYTTD 67 (437)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHH-----HHHHHHHhhCC--CeEE------EEECC
Confidence 7999999777521 556666655 4666789999999988865210 00000000111 1110 11123
Q ss_pred HHHHhcCCCEEEEeccCCC
Q 014946 136 IANALKGSDLVFITAGMGG 154 (415)
Q Consensus 136 I~~~le~~D~~~I~agLGG 154 (415)
.+++|+++|.|+...-.||
T Consensus 68 r~eAl~gADfVi~~irvGg 86 (437)
T cd05298 68 PEEAFTDADFVFAQIRVGG 86 (437)
T ss_pred HHHHhCCCCEEEEEeeeCC
Confidence 5788999999988877776
No 193
>COG4821 Uncharacterized protein containing SIS (Sugar ISomerase) phosphosugar binding domain [General function prediction only]
Probab=69.22 E-value=9.9 Score=36.07 Aligned_cols=69 Identities=22% Similarity=0.384 Sum_probs=45.1
Q ss_pred HhcCCCEEEEeccCCCCccCChHHH-HHHHHHHhCCceEEEEecCCCCchhhhHHHHHHHHHHHHhhCCEEEEEeCchhh
Q 014946 139 ALKGSDLVFITAGMGGGTGSGAAPV-VAQIAKEAGYLTVGVVTYPFSFEGRKRSSQALEAIERLQKNVDTLIVIPNDRLL 217 (415)
Q Consensus 139 ~le~~D~~~I~agLGGGTGSG~apv-ia~~ake~g~~tvavvtlP~~~Eg~~r~~nA~~~l~~L~e~~D~viv~dNd~L~ 217 (415)
.++.-|.++|+.--|- -..|+ +|+++||.|..++++..+-.+..-.-|.. +=++|.+++| +++||.+..
T Consensus 101 ~i~~~DVliviSnSGr----Npvpie~A~~~rekGa~vI~vTSl~ySq~~~SRh~----SGK~Ly~~aD--vVlDN~av~ 170 (243)
T COG4821 101 QIRPNDVLIVISNSGR----NPVPIEVAEYAREKGAKVIAVTSLDYSQSQASRHK----SGKLLYEFAD--VVLDNGAVK 170 (243)
T ss_pred cCCCCCEEEEEeCCCC----CCcchHHHHHHHhcCCeEEEEehhhhhhhchhccc----chhHHhhhcc--eeeeCCCcc
Confidence 3456788777765333 34777 89999999999999877765432222211 2246778888 467888654
No 194
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=69.21 E-value=48 Score=33.76 Aligned_cols=52 Identities=19% Similarity=0.301 Sum_probs=38.0
Q ss_pred CCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHH-HhcCCCCCCeeccc
Q 014946 58 TAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQA-LLQSAAENPLQIGD 110 (415)
Q Consensus 58 ~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~-L~~~~~~~ki~ig~ 110 (415)
.+||.|||-|.=|..++.-|.+++ .+|..|+.|-|... +.......+++-|-
T Consensus 1 ~~kI~ViGaGswGTALA~~la~ng-~~V~lw~r~~~~~~~i~~~~~N~~yLp~i 53 (329)
T COG0240 1 MMKIAVIGAGSWGTALAKVLARNG-HEVRLWGRDEEIVAEINETRENPKYLPGI 53 (329)
T ss_pred CceEEEEcCChHHHHHHHHHHhcC-CeeEEEecCHHHHHHHHhcCcCccccCCc
Confidence 378999999999999999999998 56999998875543 33333333444443
No 195
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=69.16 E-value=27 Score=34.28 Aligned_cols=91 Identities=25% Similarity=0.271 Sum_probs=53.7
Q ss_pred eeCcchHHHHHHHHHcCC-CceEEEEEECCHHHHhcCCC-CCC-eeccccccccCCCCCCchhhHHHHHHHHHHHHHHhc
Q 014946 65 GVGGGGNNAVNRMIGSGL-QGVDFYAINTDSQALLQSAA-ENP-LQIGDLLTRGLGTGGNPLLGEQAAEESKEVIANALK 141 (415)
Q Consensus 65 GvGgaG~niv~~l~~~~~-~~v~~iainTD~~~L~~~~~-~~k-i~ig~~~t~G~GaG~n~~~G~~~aee~~e~I~~~le 141 (415)
|-|--|.++|.+|++.|- ..+..+..+.+...+..... +.. +..|. -.+.+.+.++++
T Consensus 5 gsGflG~~iv~~Ll~~g~~~~Vr~~d~~~~~~~~~~~~~~~~~~~~~~D-------------------i~d~~~l~~a~~ 65 (280)
T PF01073_consen 5 GSGFLGSHIVRQLLERGYIYEVRVLDRSPPPKFLKDLQKSGVKEYIQGD-------------------ITDPESLEEALE 65 (280)
T ss_pred CCcHHHHHHHHHHHHCCCceEEEEcccccccccchhhhcccceeEEEec-------------------cccHHHHHHHhc
Confidence 457789999999999983 33554444443332221111 111 22222 124678889999
Q ss_pred CCCEEEEeccCCCCccC-----------ChHHHHHHHHHHhCCc
Q 014946 142 GSDLVFITAGMGGGTGS-----------GAAPVVAQIAKEAGYL 174 (415)
Q Consensus 142 ~~D~~~I~agLGGGTGS-----------G~apvia~~ake~g~~ 174 (415)
+||.||-+|+...-.|. .++--|.+.+++.++.
T Consensus 66 g~d~V~H~Aa~~~~~~~~~~~~~~~vNV~GT~nvl~aa~~~~Vk 109 (280)
T PF01073_consen 66 GVDVVFHTAAPVPPWGDYPPEEYYKVNVDGTRNVLEAARKAGVK 109 (280)
T ss_pred CCceEEEeCccccccCcccHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999998765551 1122345666666654
No 196
>PRK13936 phosphoheptose isomerase; Provisional
Probab=69.03 E-value=98 Score=28.70 Aligned_cols=119 Identities=21% Similarity=0.212 Sum_probs=66.5
Q ss_pred CCCeEEEEeeCcchHHHHHHHHH----cC--CCceEEEEEECCHHHHhcCCCCCCeeccccccccCCCCCCchhhHHHHH
Q 014946 57 ETAKIKVVGVGGGGNNAVNRMIG----SG--LQGVDFYAINTDSQALLQSAAENPLQIGDLLTRGLGTGGNPLLGEQAAE 130 (415)
Q Consensus 57 ~~~~i~vIGvGgaG~niv~~l~~----~~--~~~v~~iainTD~~~L~~~~~~~ki~ig~~~t~G~GaG~n~~~G~~~ae 130 (415)
+.-+|.++|.|+.+..+-+...+ .+ -.+..++...+|...+.... +++.. .+
T Consensus 42 ~a~~I~i~G~G~S~~~A~~~~~~l~~r~~~~r~g~~~~~~~~~~~~~~~~~------------------~d~~~----~~ 99 (197)
T PRK13936 42 NEGKILACGNGGSAADAQHFSAELLNRFERERPSLPAIALTTDTSTLTAIA------------------NDYSY----NE 99 (197)
T ss_pred CCCEEEEEeCcHhHHHHHHHHHHccCccCCCCccceeEecCCcHHHHHHHh------------------hcCCH----HH
Confidence 45789999999888765443322 11 12345555555555432210 11110 11
Q ss_pred HHHHHHHHHhcCCCEEEEeccCCCCccCChHHH---HHHHHHHhCCceEEEEecCCCCchhhhHHHHHHHHHHHHhhCCE
Q 014946 131 ESKEVIANALKGSDLVFITAGMGGGTGSGAAPV---VAQIAKEAGYLTVGVVTYPFSFEGRKRSSQALEAIERLQKNVDT 207 (415)
Q Consensus 131 e~~e~I~~~le~~D~~~I~agLGGGTGSG~apv---ia~~ake~g~~tvavvtlP~~~Eg~~r~~nA~~~l~~L~e~~D~ 207 (415)
...+++......-|+++++.. ||-.+. +++.+|+.|..+++|.-.+. +. +.++.+.+|.
T Consensus 100 ~~~~~~a~~~~~~Dv~i~iS~------sG~t~~~~~~~~~ak~~g~~iI~IT~~~~---s~---------l~~l~~~ad~ 161 (197)
T PRK13936 100 VFSKQVRALGQPGDVLLAIST------SGNSANVIQAIQAAHEREMHVVALTGRDG---GK---------MASLLLPEDV 161 (197)
T ss_pred HHHHHHHHhCCCCCEEEEEeC------CCCcHHHHHHHHHHHHCCCeEEEEECCCC---Ch---------hhhhhccCCE
Confidence 123444555567788777644 333333 57888999999998864432 21 2234456899
Q ss_pred EEEEeCch
Q 014946 208 LIVIPNDR 215 (415)
Q Consensus 208 viv~dNd~ 215 (415)
++.++.+.
T Consensus 162 ~l~v~~~~ 169 (197)
T PRK13936 162 EIRVPAER 169 (197)
T ss_pred EEEeCCCc
Confidence 99887765
No 197
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=68.83 E-value=8.7 Score=38.04 Aligned_cols=33 Identities=18% Similarity=0.269 Sum_probs=26.5
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCH
Q 014946 59 AKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDS 94 (415)
Q Consensus 59 ~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~ 94 (415)
|||.+||+|--|..++.+|.+.|.+ + .+.|.+.
T Consensus 1 m~Ig~IGlG~MG~~ma~~L~~~G~~-v--~v~~~~~ 33 (292)
T PRK15059 1 MKLGFIGLGIMGTPMAINLARAGHQ-L--HVTTIGP 33 (292)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCCe-E--EEEeCCH
Confidence 5799999999999999999998853 3 3556544
No 198
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=68.53 E-value=10 Score=38.64 Aligned_cols=34 Identities=18% Similarity=0.387 Sum_probs=26.0
Q ss_pred CeEEEEee-CcchHHHHHHHHHcCCCceEEEEE-ECCH
Q 014946 59 AKIKVVGV-GGGGNNAVNRMIGSGLQGVDFYAI-NTDS 94 (415)
Q Consensus 59 ~~i~vIGv-GgaG~niv~~l~~~~~~~v~~iai-nTD~ 94 (415)
+||.|||. |-.|..++..|.++ +.++.+++ .++.
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~h--P~~el~~l~~s~~ 36 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNH--PEVEITYLVSSRE 36 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcC--CCceEEEEeccch
Confidence 58999999 88999999998865 45666644 5554
No 199
>PRK07774 short chain dehydrogenase; Provisional
Probab=68.32 E-value=24 Score=32.87 Aligned_cols=85 Identities=16% Similarity=0.245 Sum_probs=52.5
Q ss_pred CCCeEEEEee-CcchHHHHHHHHHcCCCceEEEEEECCHHHHhcCCC-----CCCe-eccccccccCCCCCCchhhHHHH
Q 014946 57 ETAKIKVVGV-GGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSAA-----ENPL-QIGDLLTRGLGTGGNPLLGEQAA 129 (415)
Q Consensus 57 ~~~~i~vIGv-GgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~~~-----~~ki-~ig~~~t~G~GaG~n~~~G~~~a 129 (415)
...++.|.|- |+.|..++.+|.+.|. +.+.++.+...+..... ..++ .+-- |-. -.+..
T Consensus 5 ~~k~vlItGasg~iG~~la~~l~~~g~---~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~----------Dl~-~~~~~ 70 (250)
T PRK07774 5 DDKVAIVTGAAGGIGQAYAEALAREGA---SVVVADINAEGAERVAKQIVADGGTAIAVQV----------DVS-DPDSA 70 (250)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEc----------CCC-CHHHH
Confidence 4567999998 8999999999998763 57777776654432210 1111 1110 111 11234
Q ss_pred HHHHHHHHHHhcCCCEEEEeccCCCC
Q 014946 130 EESKEVIANALKGSDLVFITAGMGGG 155 (415)
Q Consensus 130 ee~~e~I~~~le~~D~~~I~agLGGG 155 (415)
++..+++.+.+...|.++-++|..+.
T Consensus 71 ~~~~~~~~~~~~~id~vi~~ag~~~~ 96 (250)
T PRK07774 71 KAMADATVSAFGGIDYLVNNAAIYGG 96 (250)
T ss_pred HHHHHHHHHHhCCCCEEEECCCCcCC
Confidence 44556666666789999999987653
No 200
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=68.22 E-value=50 Score=34.45 Aligned_cols=41 Identities=17% Similarity=0.311 Sum_probs=32.1
Q ss_pred CCCCCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHH
Q 014946 55 PMETAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQAL 97 (415)
Q Consensus 55 ~~~~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L 97 (415)
+....++.|||.|..|..++..+...|.. +.+.+|-+....
T Consensus 179 ~~~~~~vlViGaG~iG~~~a~~L~~~G~~--~V~v~~r~~~ra 219 (423)
T PRK00045 179 DLSGKKVLVIGAGEMGELVAKHLAEKGVR--KITVANRTLERA 219 (423)
T ss_pred CccCCEEEEECchHHHHHHHHHHHHCCCC--eEEEEeCCHHHH
Confidence 35678999999999999999999877754 456677776544
No 201
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=68.15 E-value=13 Score=40.10 Aligned_cols=40 Identities=18% Similarity=0.292 Sum_probs=35.1
Q ss_pred CCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHhcC
Q 014946 58 TAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQS 100 (415)
Q Consensus 58 ~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~ 100 (415)
+.++.|+|.|.-|-++++.|.+.|. +++++|.|.+..+..
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~g~---~vvvId~d~~~~~~~ 456 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAAGI---PLVVIETSRTRVDEL 456 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHCCC---CEEEEECCHHHHHHH
Confidence 5789999999999999999988874 589999999877654
No 202
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=68.12 E-value=12 Score=37.90 Aligned_cols=37 Identities=19% Similarity=0.374 Sum_probs=29.5
Q ss_pred CCCCCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCH
Q 014946 55 PMETAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDS 94 (415)
Q Consensus 55 ~~~~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~ 94 (415)
....++|.|||.|..|..++.+|...|. +.+++|.+.
T Consensus 143 ~l~g~~VgIIG~G~IG~~vA~~L~~~G~---~V~~~d~~~ 179 (330)
T PRK12480 143 PVKNMTVAIIGTGRIGAATAKIYAGFGA---TITAYDAYP 179 (330)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHhCCC---EEEEEeCCh
Confidence 4567899999999999999999987764 456666554
No 203
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=67.55 E-value=14 Score=40.75 Aligned_cols=88 Identities=11% Similarity=0.217 Sum_probs=57.7
Q ss_pred CCCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHhcCCC-CCCeeccccccccCCCCCCchhhHHHHHHHHHH
Q 014946 57 ETAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSAA-ENPLQIGDLLTRGLGTGGNPLLGEQAAEESKEV 135 (415)
Q Consensus 57 ~~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~~~-~~ki~ig~~~t~G~GaG~n~~~G~~~aee~~e~ 135 (415)
...++.|+|.|.-|..++..|.+.++ +++++|.|.+..+.... ..++..|. +.++ +-
T Consensus 399 ~~~~vII~G~Gr~G~~va~~L~~~g~---~vvvID~d~~~v~~~~~~g~~v~~GD--------at~~-----------~~ 456 (621)
T PRK03562 399 QQPRVIIAGFGRFGQIVGRLLLSSGV---KMTVLDHDPDHIETLRKFGMKVFYGD--------ATRM-----------DL 456 (621)
T ss_pred ccCcEEEEecChHHHHHHHHHHhCCC---CEEEEECCHHHHHHHHhcCCeEEEEe--------CCCH-----------HH
Confidence 35789999999999999999988775 58999999997765432 34455543 1122 22
Q ss_pred HHH-HhcCCCEEEEeccCCCCccCChH-HHHHHHHHHhC
Q 014946 136 IAN-ALKGSDLVFITAGMGGGTGSGAA-PVVAQIAKEAG 172 (415)
Q Consensus 136 I~~-~le~~D~~~I~agLGGGTGSG~a-pvia~~ake~g 172 (415)
+++ -++++|+++++.+ .--. -.+++.+|+.+
T Consensus 457 L~~agi~~A~~vvv~~~------d~~~n~~i~~~ar~~~ 489 (621)
T PRK03562 457 LESAGAAKAEVLINAID------DPQTSLQLVELVKEHF 489 (621)
T ss_pred HHhcCCCcCCEEEEEeC------CHHHHHHHHHHHHHhC
Confidence 221 3567888877632 3222 33667788753
No 204
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=67.31 E-value=22 Score=37.33 Aligned_cols=83 Identities=19% Similarity=0.281 Sum_probs=48.4
Q ss_pred CeEEEEeeCcc-hHHHHHHHHHc--CCCceEEEEEECCHHHHhcCCCCCCeeccccccccCCCCCCchhhHHHHHHHHHH
Q 014946 59 AKIKVVGVGGG-GNNAVNRMIGS--GLQGVDFYAINTDSQALLQSAAENPLQIGDLLTRGLGTGGNPLLGEQAAEESKEV 135 (415)
Q Consensus 59 ~~i~vIGvGga-G~niv~~l~~~--~~~~v~~iainTD~~~L~~~~~~~ki~ig~~~t~G~GaG~n~~~G~~~aee~~e~ 135 (415)
+||.+||-|+. .-.++.-|+.. .+..-+.+.+|.|...|+.+.. +.+...+-.|+ ++.+ +.-..
T Consensus 1 ~KI~iIGgGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~-----l~~~~~~~~g~--~~~v------~~ttD 67 (425)
T cd05197 1 VKIAIIGGGSSFTPELVSGLLKTPEELPISEVTLYDIDEERLDIILT-----IAKRYVEEVGA--DIKF------EKTMD 67 (425)
T ss_pred CEEEEECCchHhHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHH-----HHHHHHHhhCC--CeEE------EEeCC
Confidence 68999997764 22556666644 3677889999999988864210 00000000111 1100 11123
Q ss_pred HHHHhcCCCEEEEeccCCC
Q 014946 136 IANALKGSDLVFITAGMGG 154 (415)
Q Consensus 136 I~~~le~~D~~~I~agLGG 154 (415)
.+++++++|.||...-.||
T Consensus 68 ~~~Al~gADfVi~~irvGg 86 (425)
T cd05197 68 LEDAIIDADFVINQFRVGG 86 (425)
T ss_pred HHHHhCCCCEEEEeeecCC
Confidence 5778899999888777765
No 205
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=67.31 E-value=22 Score=35.30 Aligned_cols=39 Identities=18% Similarity=0.233 Sum_probs=31.9
Q ss_pred CCCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHh
Q 014946 57 ETAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALL 98 (415)
Q Consensus 57 ~~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~ 98 (415)
.+.|+.|||.|.+|..++..|.+.|. +.+++|.+...+.
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~Ga---~V~v~~r~~~~~~ 189 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALGA---NVTVGARKSAHLA 189 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCC---EEEEEECCHHHHH
Confidence 46899999999999999999988774 5667788766554
No 206
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=67.15 E-value=5.3 Score=42.87 Aligned_cols=40 Identities=20% Similarity=0.349 Sum_probs=33.2
Q ss_pred CCCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHhc
Q 014946 57 ETAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQ 99 (415)
Q Consensus 57 ~~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~~ 99 (415)
+-.||.|||.|--|..|+..+...|.+ .+.+|.+.+.++.
T Consensus 4 ~~~kV~VIGaG~MG~gIA~~la~aG~~---V~l~d~~~e~l~~ 43 (503)
T TIGR02279 4 NVVTVAVIGAGAMGAGIAQVAASAGHQ---VLLYDIRAEALAR 43 (503)
T ss_pred CccEEEEECcCHHHHHHHHHHHhCCCe---EEEEeCCHHHHHH
Confidence 346799999999999999999988854 6677888887764
No 207
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=66.97 E-value=9 Score=37.46 Aligned_cols=38 Identities=21% Similarity=0.279 Sum_probs=31.5
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHhc
Q 014946 59 AKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQ 99 (415)
Q Consensus 59 ~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~~ 99 (415)
|||.|||.|-.|+.++..|.+.|. +.+++|.+...++.
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g~---~V~~~d~~~~~~~~ 38 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLGH---TVYGVSRRESTCER 38 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCCC---EEEEEECCHHHHHH
Confidence 589999999999999999988864 46778888776654
No 208
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=66.83 E-value=22 Score=36.58 Aligned_cols=78 Identities=23% Similarity=0.312 Sum_probs=50.0
Q ss_pred CCCCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHhcCCCCCCeeccccccccCCCCCCchhhHHHHHHHHHH
Q 014946 56 METAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSAAENPLQIGDLLTRGLGTGGNPLLGEQAAEESKEV 135 (415)
Q Consensus 56 ~~~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~~~~~ki~ig~~~t~G~GaG~n~~~G~~~aee~~e~ 135 (415)
....++.|||.|.+|..++..+...|. +..++|.+...++.... .+|..... . ....+.
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~~lGa---~V~v~d~~~~~~~~l~~----~~g~~v~~------~--------~~~~~~ 223 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMANGLGA---TVTILDINIDRLRQLDA----EFGGRIHT------R--------YSNAYE 223 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHHCCC---eEEEEECCHHHHHHHHH----hcCceeEe------c--------cCCHHH
Confidence 356789999999999999999998885 46778888776543210 00100000 0 012344
Q ss_pred HHHHhcCCCEEEEeccCCC
Q 014946 136 IANALKGSDLVFITAGMGG 154 (415)
Q Consensus 136 I~~~le~~D~~~I~agLGG 154 (415)
+.+.+.++|.++-+.+.-|
T Consensus 224 l~~~l~~aDvVI~a~~~~g 242 (370)
T TIGR00518 224 IEDAVKRADLLIGAVLIPG 242 (370)
T ss_pred HHHHHccCCEEEEccccCC
Confidence 6667788999987765533
No 209
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=66.64 E-value=20 Score=32.75 Aligned_cols=35 Identities=14% Similarity=0.189 Sum_probs=26.7
Q ss_pred CCCCCCeEEEEeeCc-chHHHHHHHHHcCCCceEEEEEE
Q 014946 54 APMETAKIKVVGVGG-GGNNAVNRMIGSGLQGVDFYAIN 91 (415)
Q Consensus 54 ~~~~~~~i~vIGvGg-aG~niv~~l~~~~~~~v~~iain 91 (415)
....+.+++|||-|. +|.-++.+|.+.|. ..+.+|
T Consensus 40 ~~l~gk~vlViG~G~~~G~~~a~~L~~~g~---~V~v~~ 75 (168)
T cd01080 40 IDLAGKKVVVVGRSNIVGKPLAALLLNRNA---TVTVCH 75 (168)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHhhCCC---EEEEEE
Confidence 346689999999998 47778999988775 345555
No 210
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=66.52 E-value=9.2 Score=36.51 Aligned_cols=39 Identities=18% Similarity=0.405 Sum_probs=31.6
Q ss_pred CCCCCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECC
Q 014946 55 PMETAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTD 93 (415)
Q Consensus 55 ~~~~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD 93 (415)
+....|++|+|.|++|.-++..|.+.|+..-+.+.+|.+
T Consensus 22 ~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~ 60 (226)
T cd05311 22 KIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK 60 (226)
T ss_pred CccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence 345679999999999999999999887652257788886
No 211
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=66.38 E-value=87 Score=28.17 Aligned_cols=117 Identities=21% Similarity=0.264 Sum_probs=63.1
Q ss_pred CCeEEEEeeCcchHHHHH---HHHH-cCC--CceEEEEEECCHHHHhcCCCCCCeeccccccccCCCCCCchhhHHHHHH
Q 014946 58 TAKIKVVGVGGGGNNAVN---RMIG-SGL--QGVDFYAINTDSQALLQSAAENPLQIGDLLTRGLGTGGNPLLGEQAAEE 131 (415)
Q Consensus 58 ~~~i~vIGvGgaG~niv~---~l~~-~~~--~~v~~iainTD~~~L~~~~~~~ki~ig~~~t~G~GaG~n~~~G~~~aee 131 (415)
..+|-++|.|+.+..+.. .|.. .+. .+..++.++.|...+... ++++ +.+ ..
T Consensus 33 ~~~I~i~G~G~S~~~A~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~------------------~~~~--~~~--~~ 90 (177)
T cd05006 33 GGKILICGNGGSAADAQHFAAELVKRFEKERPGLPAIALTTDTSILTAI------------------ANDY--GYE--EV 90 (177)
T ss_pred CCEEEEEeCcHHHHHHHHHHHHHhchhccCCCCCceEeccCCHHHHHHH------------------hccC--CHH--HH
Confidence 457999999976665422 2221 110 135566677666554321 0111 111 01
Q ss_pred HHHHHHHHhcCCCEEEEeccCCCCccCChHHHHHHHHHHhCCceEEEEecCCCCchhhhHHHHHHHHHHHHhhCCEEEEE
Q 014946 132 SKEVIANALKGSDLVFITAGMGGGTGSGAAPVVAQIAKEAGYLTVGVVTYPFSFEGRKRSSQALEAIERLQKNVDTLIVI 211 (415)
Q Consensus 132 ~~e~I~~~le~~D~~~I~agLGGGTGSG~apvia~~ake~g~~tvavvtlP~~~Eg~~r~~nA~~~l~~L~e~~D~viv~ 211 (415)
..+.+...+..-|+++++ +..|-|. -.--.++.+|+.|..+++|.-.+.. .|.+.+|.++.+
T Consensus 91 ~~~~~~~~~~~~Dv~I~i-S~SG~t~--~~i~~~~~ak~~Ga~vI~IT~~~~s---------------~La~~aD~~l~~ 152 (177)
T cd05006 91 FSRQVEALGQPGDVLIGI-STSGNSP--NVLKALEAAKERGMKTIALTGRDGG---------------KLLELADIEIHV 152 (177)
T ss_pred HHHHHHHhCCCCCEEEEE-eCCCCCH--HHHHHHHHHHHCCCEEEEEeCCCCC---------------chhhhCCEEEEe
Confidence 112333445556665555 4444431 1222567888899999988654332 266789999988
Q ss_pred eCc
Q 014946 212 PND 214 (415)
Q Consensus 212 dNd 214 (415)
+..
T Consensus 153 ~~~ 155 (177)
T cd05006 153 PSD 155 (177)
T ss_pred CCC
Confidence 754
No 212
>PLN00198 anthocyanidin reductase; Provisional
Probab=66.35 E-value=18 Score=35.82 Aligned_cols=31 Identities=16% Similarity=0.290 Sum_probs=26.8
Q ss_pred cCCCCCCCeEEEEe-eCcchHHHHHHHHHcCC
Q 014946 52 SFAPMETAKIKVVG-VGGGGNNAVNRMIGSGL 82 (415)
Q Consensus 52 ~~~~~~~~~i~vIG-vGgaG~niv~~l~~~~~ 82 (415)
.+.|+++++|+|.| -|..|..++.+|.+.|.
T Consensus 3 ~~~~~~~~~vlItG~~GfIG~~l~~~L~~~g~ 34 (338)
T PLN00198 3 TLTPTGKKTACVIGGTGFLASLLIKLLLQKGY 34 (338)
T ss_pred cccCCCCCeEEEECCchHHHHHHHHHHHHCCC
Confidence 35688889999999 77899999999999875
No 213
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=65.73 E-value=5 Score=45.11 Aligned_cols=43 Identities=16% Similarity=0.217 Sum_probs=35.2
Q ss_pred CCCCCCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHhc
Q 014946 54 APMETAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQ 99 (415)
Q Consensus 54 ~~~~~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~~ 99 (415)
.+.+-.+|.|||-|--|..|+..+...|++ .+.+|.|...|++
T Consensus 331 ~~~~i~~v~ViGaG~MG~gIA~~~a~~G~~---V~l~d~~~~~l~~ 373 (737)
T TIGR02441 331 PQRPVKTLAVLGAGLMGAGIAQVSVDKGLK---TVLKDATPAGLDR 373 (737)
T ss_pred CCCcccEEEEECCCHhHHHHHHHHHhCCCc---EEEecCCHHHHHH
Confidence 445556799999999999999999888754 6788998888765
No 214
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=65.67 E-value=8.6 Score=35.28 Aligned_cols=37 Identities=22% Similarity=0.374 Sum_probs=30.0
Q ss_pred eEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHhc
Q 014946 60 KIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQ 99 (415)
Q Consensus 60 ~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~~ 99 (415)
||.|||.|..|..|+-.+...|. +...+|.|.+.|+.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~---~V~l~d~~~~~l~~ 37 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGY---EVTLYDRSPEALER 37 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTS---EEEEE-SSHHHHHH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCC---cEEEEECChHHHHh
Confidence 68999999999999999999874 57788999888753
No 215
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=65.66 E-value=23 Score=37.16 Aligned_cols=116 Identities=22% Similarity=0.358 Sum_probs=71.9
Q ss_pred CCCCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHhcCCCCCCeeccccccccCCCCCCchhhHHHHHH----
Q 014946 56 METAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSAAENPLQIGDLLTRGLGTGGNPLLGEQAAEE---- 131 (415)
Q Consensus 56 ~~~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~~~~~ki~ig~~~t~G~GaG~n~~~G~~~aee---- 131 (415)
....+++|||.|-.|.-++.+|.++|+. +.+.+|=.... +.+.+++
T Consensus 176 L~~~~vlvIGAGem~~lva~~L~~~g~~--~i~IaNRT~er----------------------------A~~La~~~~~~ 225 (414)
T COG0373 176 LKDKKVLVIGAGEMGELVAKHLAEKGVK--KITIANRTLER----------------------------AEELAKKLGAE 225 (414)
T ss_pred cccCeEEEEcccHHHHHHHHHHHhCCCC--EEEEEcCCHHH----------------------------HHHHHHHhCCe
Confidence 4577899999999999999999999975 34455543321 2222222
Q ss_pred --HHHHHHHHhcCCCEEEEeccCCCCccCCh-HHHHHHHHHHh------CCceEEEEecCCCCchhhhHHHHHHHHHHHH
Q 014946 132 --SKEVIANALKGSDLVFITAGMGGGTGSGA-APVVAQIAKEA------GYLTVGVVTYPFSFEGRKRSSQALEAIERLQ 202 (415)
Q Consensus 132 --~~e~I~~~le~~D~~~I~agLGGGTGSG~-apvia~~ake~------g~~tvavvtlP~~~Eg~~r~~nA~~~l~~L~ 202 (415)
..+++...+.++|.||.. ||+ .|+|-+-.-+. ..+.|-+ ..|-..|...
T Consensus 226 ~~~l~el~~~l~~~DvViss--------Tsa~~~ii~~~~ve~a~~~r~~~livDi-avPRdie~~v------------- 283 (414)
T COG0373 226 AVALEELLEALAEADVVISS--------TSAPHPIITREMVERALKIRKRLLIVDI-AVPRDVEPEV------------- 283 (414)
T ss_pred eecHHHHHHhhhhCCEEEEe--------cCCCccccCHHHHHHHHhcccCeEEEEe-cCCCCCCccc-------------
Confidence 358888999999999875 232 35554322221 1123333 4577665532
Q ss_pred hhCCEEEEEeCchhhhhcccc
Q 014946 203 KNVDTLIVIPNDRLLDITDEQ 223 (415)
Q Consensus 203 e~~D~viv~dNd~L~~~~~~~ 223 (415)
...+.+.++|=|.|..+..++
T Consensus 284 ~~l~~v~l~~iDDL~~iv~~n 304 (414)
T COG0373 284 GELPNVFLYTIDDLEEIVEEN 304 (414)
T ss_pred cCcCCeEEEehhhHHHHHHHh
Confidence 134567788888888776543
No 216
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=65.53 E-value=19 Score=37.79 Aligned_cols=37 Identities=14% Similarity=0.355 Sum_probs=31.1
Q ss_pred CCCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHH
Q 014946 57 ETAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQ 95 (415)
Q Consensus 57 ~~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~ 95 (415)
.+.+|+|||.|+.|+.++..|...|+. .+..+|.|.-
T Consensus 19 ~~s~VlliG~gglGsEilKNLvL~GIg--~~tIvD~~~V 55 (425)
T cd01493 19 ESAHVCLLNATATGTEILKNLVLPGIG--SFTIVDGSKV 55 (425)
T ss_pred hhCeEEEEcCcHHHHHHHHHHHHcCCC--eEEEECCCcC
Confidence 478899999999999999999999985 5667777543
No 217
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=65.29 E-value=10 Score=37.15 Aligned_cols=40 Identities=23% Similarity=0.304 Sum_probs=32.9
Q ss_pred CCCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHhc
Q 014946 57 ETAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQ 99 (415)
Q Consensus 57 ~~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~~ 99 (415)
...||.|||.|.-|..++..+...|. +.+.+|.|.+.++.
T Consensus 3 ~~~kI~vIGaG~mG~~iA~~la~~G~---~V~l~d~~~~~~~~ 42 (292)
T PRK07530 3 AIKKVGVIGAGQMGNGIAHVCALAGY---DVLLNDVSADRLEA 42 (292)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCC---eEEEEeCCHHHHHH
Confidence 34689999999999999999998875 46677888777654
No 218
>PRK07326 short chain dehydrogenase; Provisional
Probab=64.91 E-value=40 Score=31.08 Aligned_cols=83 Identities=16% Similarity=0.228 Sum_probs=49.0
Q ss_pred CCCeEEEEee-CcchHHHHHHHHHcCCCceEEEEEECCHHHHhcC----CCCCCeeccccccccCCCCCCchhhHHHHHH
Q 014946 57 ETAKIKVVGV-GGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQS----AAENPLQIGDLLTRGLGTGGNPLLGEQAAEE 131 (415)
Q Consensus 57 ~~~~i~vIGv-GgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~----~~~~ki~ig~~~t~G~GaG~n~~~G~~~aee 131 (415)
.+.+++|+|- |+.|..++.+|.++|. +.++++.+...+... ....++.. ..+ . -.+ .+..++
T Consensus 5 ~~~~ilItGatg~iG~~la~~l~~~g~---~V~~~~r~~~~~~~~~~~l~~~~~~~~----~~~-D-~~~----~~~~~~ 71 (237)
T PRK07326 5 KGKVALITGGSKGIGFAIAEALLAEGY---KVAITARDQKELEEAAAELNNKGNVLG----LAA-D-VRD----EADVQR 71 (237)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCCC---EEEEeeCCHHHHHHHHHHHhccCcEEE----EEc-c-CCC----HHHHHH
Confidence 3567999986 8899999999998764 467777776655432 11011111 000 0 011 223344
Q ss_pred HHHHHHHHhcCCCEEEEeccC
Q 014946 132 SKEVIANALKGSDLVFITAGM 152 (415)
Q Consensus 132 ~~e~I~~~le~~D~~~I~agL 152 (415)
..+++.+.+..+|.++.++|.
T Consensus 72 ~~~~~~~~~~~~d~vi~~ag~ 92 (237)
T PRK07326 72 AVDAIVAAFGGLDVLIANAGV 92 (237)
T ss_pred HHHHHHHHcCCCCEEEECCCC
Confidence 555666666789998887654
No 219
>COG0206 FtsZ Cell division GTPase [Cell division and chromosome partitioning]
Probab=64.85 E-value=10 Score=38.66 Aligned_cols=70 Identities=11% Similarity=-0.031 Sum_probs=55.2
Q ss_pred HHHHHHHHHhhcCCCCcEEEEeeecCCCCCeEEEEEEEeCCCccccccccCChhhhhHHhhhhc-cccccCCCCCCCCCC
Q 014946 322 VNRVSQVVTSLADPSANIIFGAVVDDRYNGEIHVTIIATGFSQSFQKTLLTNPKAAKVLDKAAG-SQESRGVPLPLNTPT 400 (415)
Q Consensus 322 v~~i~~~i~~~~~~~a~Ii~G~~~d~~l~~~i~VtvIatG~~~~~~~~~~~~~~~~~~~~~~~~-~~e~~~~~~p~~~~~ 400 (415)
..++.+.+++.. .+....+.++.+.-++++..+|. ..++.+.+ .++..|+.+..+ ..+++-|+||.++..
T Consensus 233 ~~r~~~a~~~A~------~~pLl~~~~i~gA~~~Lv~i~g~-~dl~l~ev--~~~~~~i~~~i~~~~~vi~G~~~d~~~~ 303 (338)
T COG0206 233 EDRAREAVEKAL------NSPLLDDVDIEGAKGALINITGG-KDLTLEEV--EEALERIQEIIDPDADVIWGAYIDPGLR 303 (338)
T ss_pred hhHHHHHHHHHh------cCCcccccccccccceEEEEecC-CccCHHHH--HHHHHHHHHHhCCCceEEEccccCCCCC
Confidence 445555566553 23355668888889999999998 67888888 799999999998 999999999976544
No 220
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=64.18 E-value=16 Score=38.31 Aligned_cols=40 Identities=15% Similarity=0.233 Sum_probs=33.0
Q ss_pred CCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHhcCC
Q 014946 58 TAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSA 101 (415)
Q Consensus 58 ~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~~ 101 (415)
.|||.|||+|-.|.-++-.|.+ + .+.+.+|.|.+..+.+.
T Consensus 6 ~mkI~vIGlGyvGlpmA~~la~-~---~~V~g~D~~~~~ve~l~ 45 (425)
T PRK15182 6 EVKIAIIGLGYVGLPLAVEFGK-S---RQVVGFDVNKKRILELK 45 (425)
T ss_pred CCeEEEECcCcchHHHHHHHhc-C---CEEEEEeCCHHHHHHHH
Confidence 3899999999999999888654 4 46789999998877654
No 221
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=63.95 E-value=15 Score=36.64 Aligned_cols=44 Identities=16% Similarity=0.263 Sum_probs=32.4
Q ss_pred ChHHHHhhhhhhh-hccccccccccccCceeeechhhhhhhccCC
Q 014946 225 ALQDAFLLADDVL-RQGVQGISDIITIPGLVNVDFADVKAVMKDS 268 (415)
Q Consensus 225 ~i~~af~~~N~~i-~~~i~~It~~i~~~G~invD~~di~t~L~~~ 268 (415)
.-.+.-+.+|+++ .-.+..+.|.+.+..-..+|...+..++..+
T Consensus 165 G~G~~~Kl~nn~l~~~~~~a~aEAl~la~k~Gld~~~~~~vi~~~ 209 (286)
T COG2084 165 GAGQAAKLANNILLAGNIAALAEALALAEKAGLDPDVVLEVISGG 209 (286)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcc
Confidence 4556778888874 4455567777777767788998888888774
No 222
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=63.18 E-value=9.7 Score=37.87 Aligned_cols=34 Identities=21% Similarity=0.295 Sum_probs=28.2
Q ss_pred CCCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEE
Q 014946 57 ETAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAIN 91 (415)
Q Consensus 57 ~~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iain 91 (415)
+.|||.|||.|+-|+-+.-+|.+.|. +|.+++=.
T Consensus 1 ~~m~I~IiGaGaiG~~~a~~L~~~G~-~V~lv~r~ 34 (305)
T PRK05708 1 MSMTWHILGAGSLGSLWACRLARAGL-PVRLILRD 34 (305)
T ss_pred CCceEEEECCCHHHHHHHHHHHhCCC-CeEEEEec
Confidence 36899999999999999999998884 47766553
No 223
>PRK12829 short chain dehydrogenase; Provisional
Probab=62.83 E-value=34 Score=32.06 Aligned_cols=86 Identities=19% Similarity=0.310 Sum_probs=52.8
Q ss_pred CCCCCeEEEEee-CcchHHHHHHHHHcCCCceEEEEEECCHHHHhcCCC---CCCe--eccccccccCCCCCCchhhHHH
Q 014946 55 PMETAKIKVVGV-GGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSAA---ENPL--QIGDLLTRGLGTGGNPLLGEQA 128 (415)
Q Consensus 55 ~~~~~~i~vIGv-GgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~~~---~~ki--~ig~~~t~G~GaG~n~~~G~~~ 128 (415)
.+...+++|+|. |+-|..++.+|.++|. +.+.++-|...+..... ..++ ..+ |.. -.+.
T Consensus 8 ~~~~~~vlItGa~g~iG~~~a~~L~~~g~---~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-----------D~~-~~~~ 72 (264)
T PRK12829 8 PLDGLRVLVTGGASGIGRAIAEAFAEAGA---RVHVCDVSEAALAATAARLPGAKVTATVA-----------DVA-DPAQ 72 (264)
T ss_pred ccCCCEEEEeCCCCcHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHhcCceEEEEc-----------cCC-CHHH
Confidence 355688999997 7788899999998874 45666666554443211 1111 111 111 1233
Q ss_pred HHHHHHHHHHHhcCCCEEEEeccCCCC
Q 014946 129 AEESKEVIANALKGSDLVFITAGMGGG 155 (415)
Q Consensus 129 aee~~e~I~~~le~~D~~~I~agLGGG 155 (415)
.++..+++.+.+.++|+|+-.+|....
T Consensus 73 ~~~~~~~~~~~~~~~d~vi~~ag~~~~ 99 (264)
T PRK12829 73 VERVFDTAVERFGGLDVLVNNAGIAGP 99 (264)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCCCCC
Confidence 455566677777889999888776533
No 224
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=62.23 E-value=9.1 Score=40.64 Aligned_cols=61 Identities=28% Similarity=0.488 Sum_probs=41.2
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHH--HhcCC-CCCCeeccccccccCCCCCCc
Q 014946 59 AKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQA--LLQSA-AENPLQIGDLLTRGLGTGGNP 122 (415)
Q Consensus 59 ~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~--L~~~~-~~~ki~ig~~~t~G~GaG~n~ 122 (415)
.||+|||.|-||-.++.+|++++..++..+-- +|.-. ...++ .++.|.+|.+-.. |..+||
T Consensus 22 ~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa-~dRIGGRI~ti~~~d~~ielGAqwih--G~~gNp 85 (498)
T KOG0685|consen 22 AKIVIIGAGIAGLAAATRLLENGFIDVLILEA-SDRIGGRIHTIPFADGVIELGAQWIH--GEEGNP 85 (498)
T ss_pred ceEEEECCchHHHHHHHHHHHhCCceEEEEEe-ccccCceEeeEEcCCCeEeecceeec--CCCCCh
Confidence 48999999999999999999998775543321 23321 11222 3568888887664 445566
No 225
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=62.21 E-value=26 Score=34.03 Aligned_cols=72 Identities=17% Similarity=0.229 Sum_probs=43.4
Q ss_pred CeEEEEee-CcchHHHHHHHHHcCCCceEEEEEECCHHHHhcCCC-CCCeeccccccccCCCCCCchhhHHHHHHHHHHH
Q 014946 59 AKIKVVGV-GGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSAA-ENPLQIGDLLTRGLGTGGNPLLGEQAAEESKEVI 136 (415)
Q Consensus 59 ~~i~vIGv-GgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~~~-~~ki~ig~~~t~G~GaG~n~~~G~~~aee~~e~I 136 (415)
|+|.|.|. |.-|..++..|.+.|. +.++++.+...+..... .-++..+ |. .+.+.+
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~---~V~~~~r~~~~~~~~~~~~~~~~~~-----------D~--------~~~~~l 58 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGE---EVRVLVRPTSDRRNLEGLDVEIVEG-----------DL--------RDPASL 58 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCC---EEEEEEecCccccccccCCceEEEe-----------eC--------CCHHHH
Confidence 57999986 8899999999998874 45555544332221110 0011111 11 123567
Q ss_pred HHHhcCCCEEEEeccC
Q 014946 137 ANALKGSDLVFITAGM 152 (415)
Q Consensus 137 ~~~le~~D~~~I~agL 152 (415)
.+.++++|.|+-+++.
T Consensus 59 ~~~~~~~d~vi~~a~~ 74 (328)
T TIGR03466 59 RKAVAGCRALFHVAAD 74 (328)
T ss_pred HHHHhCCCEEEEecee
Confidence 7778889988877753
No 226
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=62.20 E-value=28 Score=36.34 Aligned_cols=31 Identities=23% Similarity=0.371 Sum_probs=24.5
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCceEEEEEEC
Q 014946 59 AKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINT 92 (415)
Q Consensus 59 ~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainT 92 (415)
.||.|||+|++|-.++..|.+.|. +....|.
T Consensus 1 ~~v~viG~G~sG~s~a~~l~~~G~---~V~~~D~ 31 (459)
T PRK02705 1 AIAHVIGLGRSGIAAARLLKAQGW---EVVVSDR 31 (459)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCC---EEEEECC
Confidence 379999999999999888888874 3445554
No 227
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=61.85 E-value=7.2 Score=43.69 Aligned_cols=43 Identities=14% Similarity=0.178 Sum_probs=35.4
Q ss_pred CCCCCCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHhc
Q 014946 54 APMETAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQ 99 (415)
Q Consensus 54 ~~~~~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~~ 99 (415)
.+..-.+|.|||-|--|..|+-.+...|+ +.+.+|.|.+.|++
T Consensus 309 ~~~~i~~v~ViGaG~mG~gIA~~~a~~G~---~V~l~d~~~~~l~~ 351 (714)
T TIGR02437 309 IAKDVKQAAVLGAGIMGGGIAYQSASKGT---PIVMKDINQHSLDL 351 (714)
T ss_pred CccccceEEEECCchHHHHHHHHHHhCCC---eEEEEeCCHHHHHH
Confidence 45566789999999999999999988875 47788988887764
No 228
>PRK08655 prephenate dehydrogenase; Provisional
Probab=61.76 E-value=13 Score=39.12 Aligned_cols=36 Identities=22% Similarity=0.363 Sum_probs=28.0
Q ss_pred CeEEEEe-eCcchHHHHHHHHHcCCCceEEEEEECCHHHH
Q 014946 59 AKIKVVG-VGGGGNNAVNRMIGSGLQGVDFYAINTDSQAL 97 (415)
Q Consensus 59 ~~i~vIG-vGgaG~niv~~l~~~~~~~v~~iainTD~~~L 97 (415)
|+|.||| .|..|..++..|.+.|. +.+.++-|....
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~---~V~v~~r~~~~~ 37 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGF---EVIVTGRDPKKG 37 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCC---EEEEEECChHHH
Confidence 6899997 89999999999998874 345566665543
No 229
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=61.68 E-value=18 Score=35.83 Aligned_cols=41 Identities=12% Similarity=0.267 Sum_probs=32.9
Q ss_pred CCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHhc
Q 014946 58 TAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQ 99 (415)
Q Consensus 58 ~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~~ 99 (415)
.++|.|||.|..|..++..|.+.|.. .+.+++|.+...++.
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~-~~V~~~dr~~~~~~~ 46 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLA-GEIVGADRSAETRAR 46 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCC-cEEEEEECCHHHHHH
Confidence 46899999999999999999888752 456778888776554
No 230
>cd05015 SIS_PGI_1 Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains. This classification is based on the alignment of the first SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of glucose 6-phosphate to fructose 6-phosphate. As an extracellular protein, PGI also has functions equivalent to neuroleukin (NLK), autocrine motility factor (AMF), and maturation factor (MF). Evidence suggests that PGI, NLK, AMF, and MF are closely related or identical. NLK is a neurotrophic growth factor that promotes regeneration and survival of neurons. The dimeric form of NLK has isomerase function, whereas its monomeric form carries out neurotrophic activity. AMF is a cytokine that stimulates cell migration and metastasis. MF mediates the differentiation of human myeloid leukemic HL-60 cells to terminal monocytic cells.
Probab=61.28 E-value=1.2e+02 Score=27.00 Aligned_cols=40 Identities=25% Similarity=0.370 Sum_probs=21.7
Q ss_pred CCeEEEEeeCcchH--HHHHHH-HHcCCCceE-EEEEECCHHHH
Q 014946 58 TAKIKVVGVGGGGN--NAVNRM-IGSGLQGVD-FYAINTDSQAL 97 (415)
Q Consensus 58 ~~~i~vIGvGgaG~--niv~~l-~~~~~~~v~-~iainTD~~~L 97 (415)
-.+|.++|+||... .++..+ .+..-.+.. ++.-|+|...+
T Consensus 20 ~~~iv~~GiGGS~lg~~~~~~~~~~~~~~~~~i~~~~~~D~~~~ 63 (158)
T cd05015 20 ITDVVVIGIGGSDLGPRAVYEALKPYFKGGLRLHFVSNVDPDDL 63 (158)
T ss_pred CCEEEEEecCccHHHHHHHHHHHHhhccCCceEEEEeCCCHHHH
Confidence 35699999999544 344443 332211233 23456687543
No 231
>PLN02256 arogenate dehydrogenase
Probab=61.23 E-value=13 Score=37.08 Aligned_cols=39 Identities=21% Similarity=0.308 Sum_probs=31.4
Q ss_pred cCCCCCCCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECC
Q 014946 52 SFAPMETAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTD 93 (415)
Q Consensus 52 ~~~~~~~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD 93 (415)
..+++..++|.|||.|..|+.++..|.+.|. +.+++|-+
T Consensus 30 ~~~~~~~~kI~IIG~G~mG~slA~~L~~~G~---~V~~~d~~ 68 (304)
T PLN02256 30 ELEKSRKLKIGIVGFGNFGQFLAKTFVKQGH---TVLATSRS 68 (304)
T ss_pred hhccCCCCEEEEEeeCHHHHHHHHHHHhCCC---EEEEEECc
Confidence 3567788999999999999999999988763 45666654
No 232
>PRK06057 short chain dehydrogenase; Provisional
Probab=61.06 E-value=35 Score=32.11 Aligned_cols=83 Identities=18% Similarity=0.197 Sum_probs=49.3
Q ss_pred CCCCeEEEEee-CcchHHHHHHHHHcCCCceEEEEEECCHHHHhcCCC--CCCeeccccccccCCCCCCchhhHHHHHHH
Q 014946 56 METAKIKVVGV-GGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSAA--ENPLQIGDLLTRGLGTGGNPLLGEQAAEES 132 (415)
Q Consensus 56 ~~~~~i~vIGv-GgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~~~--~~ki~ig~~~t~G~GaG~n~~~G~~~aee~ 132 (415)
+...++.|+|. |+-|..++.+|.+.|. +.++++.+...++.... ...++.. .+ .+ .+..+..
T Consensus 5 ~~~~~vlItGasggIG~~~a~~l~~~G~---~v~~~~r~~~~~~~~~~~~~~~~~~~-D~-------~~----~~~~~~~ 69 (255)
T PRK06057 5 LAGRVAVITGGGSGIGLATARRLAAEGA---TVVVGDIDPEAGKAAADEVGGLFVPT-DV-------TD----EDAVNAL 69 (255)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHcCCcEEEe-eC-------CC----HHHHHHH
Confidence 45678999999 8899999999998874 45666655544432211 1111111 01 01 1234445
Q ss_pred HHHHHHHhcCCCEEEEeccCC
Q 014946 133 KEVIANALKGSDLVFITAGMG 153 (415)
Q Consensus 133 ~e~I~~~le~~D~~~I~agLG 153 (415)
.+++.+.....|.++.++|..
T Consensus 70 ~~~~~~~~~~id~vi~~ag~~ 90 (255)
T PRK06057 70 FDTAAETYGSVDIAFNNAGIS 90 (255)
T ss_pred HHHHHHHcCCCCEEEECCCcC
Confidence 555666666789888877643
No 233
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=61.00 E-value=16 Score=42.58 Aligned_cols=43 Identities=16% Similarity=0.330 Sum_probs=34.2
Q ss_pred CCCCCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHhc
Q 014946 55 PMETAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQ 99 (415)
Q Consensus 55 ~~~~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~~ 99 (415)
.+.+.+|+|||+||.|+-++..|...|+. ....+|.|.-.+..
T Consensus 21 kL~~s~VLIiG~gGLG~EiaKnL~laGVg--~iti~D~d~v~~sd 63 (1008)
T TIGR01408 21 KMAKSNVLISGMGGLGLEIAKNLVLAGVK--SVTLHDTEKCQAWD 63 (1008)
T ss_pred HHhhCcEEEECCCHHHHHHHHHHHHcCCC--eEEEEeCCeecHhh
Confidence 34468899999999999999999999986 45577877655544
No 234
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=60.75 E-value=39 Score=34.35 Aligned_cols=32 Identities=16% Similarity=0.331 Sum_probs=26.6
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCceEEEEEEC
Q 014946 59 AKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINT 92 (415)
Q Consensus 59 ~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainT 92 (415)
+||.|+|.|.-|-++++.+.++ ++++.++++.
T Consensus 2 ikVaI~G~GrIGr~va~al~~~--~d~eLvav~d 33 (341)
T PRK04207 2 IKVGVNGYGTIGKRVADAVAAQ--PDMELVGVAK 33 (341)
T ss_pred eEEEEECCCHHHHHHHHHHhcC--CCcEEEEEEC
Confidence 6899999999999999887765 4678888764
No 235
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=60.55 E-value=24 Score=41.24 Aligned_cols=45 Identities=16% Similarity=0.140 Sum_probs=36.3
Q ss_pred CCCCeEEEEeeCcchHHHHHHHHHcCCC---ceEEEEEECCHHHHhcC
Q 014946 56 METAKIKVVGVGGGGNNAVNRMIGSGLQ---GVDFYAINTDSQALLQS 100 (415)
Q Consensus 56 ~~~~~i~vIGvGgaG~niv~~l~~~~~~---~v~~iainTD~~~L~~~ 100 (415)
..+.||.|||+||-||.++..|...|+. +-.+..+|-|.-.+.++
T Consensus 417 L~~~kVlvvGaGGlG~e~lknLal~Gv~~~~~G~i~IvD~D~Ve~SNL 464 (1008)
T TIGR01408 417 LQNLNIFLVGCGAIGCEMLKNFALMGVGTGKKGMITVTDPDLIEKSNL 464 (1008)
T ss_pred HhhCcEEEECCChHHHHHHHHHHHhCCCcCCCCeEEEECCCEeccccc
Confidence 3578999999999999999999998872 24677888887766554
No 236
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=60.18 E-value=24 Score=34.82 Aligned_cols=40 Identities=23% Similarity=0.378 Sum_probs=33.1
Q ss_pred CeEEEEeeCcchHHHHHHHHHcC-CCceEEEEEECCHHHHh
Q 014946 59 AKIKVVGVGGGGNNAVNRMIGSG-LQGVDFYAINTDSQALL 98 (415)
Q Consensus 59 ~~i~vIGvGgaG~niv~~l~~~~-~~~v~~iainTD~~~L~ 98 (415)
+||.+||.|--|..|+..|++.+ +...+.++.|-+...+.
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~ 42 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRA 42 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHH
Confidence 68999999999999999999998 55567777777666553
No 237
>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]
Probab=59.83 E-value=63 Score=32.27 Aligned_cols=37 Identities=27% Similarity=0.427 Sum_probs=29.2
Q ss_pred CCCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCH
Q 014946 57 ETAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDS 94 (415)
Q Consensus 57 ~~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~ 94 (415)
...||.|||+|+.|..++-.++.+++- -+.+.+|-+.
T Consensus 19 ~~~KItVVG~G~VGmAca~siL~k~La-del~lvDv~~ 55 (332)
T KOG1495|consen 19 KHNKITVVGVGQVGMACAISILLKGLA-DELVLVDVNE 55 (332)
T ss_pred cCceEEEEccchHHHHHHHHHHHhhhh-hceEEEecCc
Confidence 378999999999999999999888874 3455666533
No 238
>PLN02214 cinnamoyl-CoA reductase
Probab=59.64 E-value=30 Score=34.61 Aligned_cols=25 Identities=20% Similarity=0.230 Sum_probs=22.3
Q ss_pred CCeEEEEee-CcchHHHHHHHHHcCC
Q 014946 58 TAKIKVVGV-GGGGNNAVNRMIGSGL 82 (415)
Q Consensus 58 ~~~i~vIGv-GgaG~niv~~l~~~~~ 82 (415)
.++|+|.|. |..|..++++|.+.|.
T Consensus 10 ~~~vlVTGatGfIG~~l~~~L~~~G~ 35 (342)
T PLN02214 10 GKTVCVTGAGGYIASWIVKILLERGY 35 (342)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCcC
Confidence 467999998 8999999999999874
No 239
>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]
Probab=59.51 E-value=28 Score=33.44 Aligned_cols=51 Identities=20% Similarity=0.350 Sum_probs=39.4
Q ss_pred CCCCCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHhcCCCCCCeecc
Q 014946 55 PMETAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSAAENPLQIG 109 (415)
Q Consensus 55 ~~~~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~~~~~ki~ig 109 (415)
.....+++|||.||-|+-++.+|...|+.. ...+|-|.-.+.++ ...+++.
T Consensus 27 ~l~~s~vlvvG~GglG~~~~~~la~aGvg~--l~i~D~d~v~~snL--~rq~~~~ 77 (254)
T COG0476 27 KLKDSRVLVVGAGGLGSPAAKYLALAGVGK--LTIVDFDTVELSNL--QRQFLFT 77 (254)
T ss_pred HHhhCCEEEEecChhHHHHHHHHHHcCCCe--EEEEcCCccccccc--Cceeeec
Confidence 445788999999999999999999999864 55888888777553 3344444
No 240
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=59.42 E-value=44 Score=34.91 Aligned_cols=40 Identities=15% Similarity=0.305 Sum_probs=32.0
Q ss_pred CCCCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHH
Q 014946 56 METAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQAL 97 (415)
Q Consensus 56 ~~~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L 97 (415)
....++.|||.|..|.-++..|...|+. +.+.+|.+....
T Consensus 178 l~~~~VlViGaG~iG~~~a~~L~~~G~~--~V~v~~rs~~ra 217 (417)
T TIGR01035 178 LKGKKALLIGAGEMGELVAKHLLRKGVG--KILIANRTYERA 217 (417)
T ss_pred ccCCEEEEECChHHHHHHHHHHHHCCCC--EEEEEeCCHHHH
Confidence 5568999999999999999999887753 466778776543
No 241
>PRK05867 short chain dehydrogenase; Provisional
Probab=59.26 E-value=42 Score=31.54 Aligned_cols=86 Identities=15% Similarity=0.146 Sum_probs=51.3
Q ss_pred CCCCCeEEEEee-CcchHHHHHHHHHcCCCceEEEEEECCHHHHhcCCC-----CCCeeccccccccCCCCCCchhhHHH
Q 014946 55 PMETAKIKVVGV-GGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSAA-----ENPLQIGDLLTRGLGTGGNPLLGEQA 128 (415)
Q Consensus 55 ~~~~~~i~vIGv-GgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~~~-----~~ki~ig~~~t~G~GaG~n~~~G~~~ 128 (415)
+..+..+.|.|. ||-|..++.+|.+.|. +.+.++.+...++.... ..++..=. .|.. -.+.
T Consensus 6 ~~~~k~vlVtGas~gIG~~ia~~l~~~G~---~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~---------~D~~-~~~~ 72 (253)
T PRK05867 6 DLHGKRALITGASTGIGKRVALAYVEAGA---QVAIAARHLDALEKLADEIGTSGGKVVPVC---------CDVS-QHQQ 72 (253)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEcCCHHHHHHHHHHHHhcCCeEEEEE---------ccCC-CHHH
Confidence 455678999998 6789999999999874 45666666665543211 11111000 0111 1223
Q ss_pred HHHHHHHHHHHhcCCCEEEEeccCC
Q 014946 129 AEESKEVIANALKGSDLVFITAGMG 153 (415)
Q Consensus 129 aee~~e~I~~~le~~D~~~I~agLG 153 (415)
.++..+++.+.+...|.++-.+|..
T Consensus 73 ~~~~~~~~~~~~g~id~lv~~ag~~ 97 (253)
T PRK05867 73 VTSMLDQVTAELGGIDIAVCNAGII 97 (253)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCCC
Confidence 4445556666667899988887654
No 242
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=58.82 E-value=48 Score=34.42 Aligned_cols=35 Identities=20% Similarity=0.271 Sum_probs=27.8
Q ss_pred CCCCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECC
Q 014946 56 METAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTD 93 (415)
Q Consensus 56 ~~~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD 93 (415)
+.+.++.|+|.|+.|..++..|.+.|.. ..++|.+
T Consensus 3 ~~~k~v~iiG~g~~G~~~A~~l~~~G~~---V~~~d~~ 37 (450)
T PRK14106 3 LKGKKVLVVGAGVSGLALAKFLKKLGAK---VILTDEK 37 (450)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCE---EEEEeCC
Confidence 3467899999999999999999998853 4455554
No 243
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=58.58 E-value=39 Score=34.15 Aligned_cols=34 Identities=12% Similarity=0.193 Sum_probs=27.0
Q ss_pred eEEEEee-CcchHHHHHHHHHcCCC----ceEEEEEECC
Q 014946 60 KIKVVGV-GGGGNNAVNRMIGSGLQ----GVDFYAINTD 93 (415)
Q Consensus 60 ~i~vIGv-GgaG~niv~~l~~~~~~----~v~~iainTD 93 (415)
||.|||. |..|..++..|...++. +.+.+.+|.+
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~ 39 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIP 39 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecC
Confidence 6899999 99999999999887763 2357777763
No 244
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.25 E-value=1e+02 Score=28.59 Aligned_cols=135 Identities=22% Similarity=0.209 Sum_probs=78.2
Q ss_pred EEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHhcCCCCCCeeccccccccCCCCCCchhhHHHHHHHHHHHHHHhc
Q 014946 62 KVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSAAENPLQIGDLLTRGLGTGGNPLLGEQAAEESKEVIANALK 141 (415)
Q Consensus 62 ~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~~~~~ki~ig~~~t~G~GaG~n~~~G~~~aee~~e~I~~~le 141 (415)
.|-|.-|.|-..+-......+.+ .++.||+|..+-.-.|.+ +-+...+++....+.++..++
T Consensus 6 IvaG~NGsGKstv~~~~~~~~~~-~~~~VN~D~iA~~i~p~~-----------------p~~~~i~A~r~ai~~i~~~I~ 67 (187)
T COG4185 6 IVAGPNGSGKSTVYASTLAPLLP-GIVFVNADEIAAQISPDN-----------------PTSAAIQAARVAIDRIARLID 67 (187)
T ss_pred EEecCCCCCceeeeeccchhhcC-CeEEECHHHHhhhcCCCC-----------------chHHHHHHHHHHHHHHHHHHH
Confidence 34477777776655544444433 578999998876443332 223445677777777877777
Q ss_pred CCCEEEEeccCCCCccCChHHHHHHHHHHhCC---ceEEEEecCCC----------------Cchh--hhHHHHHHHHHH
Q 014946 142 GSDLVFITAGMGGGTGSGAAPVVAQIAKEAGY---LTVGVVTYPFS----------------FEGR--KRSSQALEAIER 200 (415)
Q Consensus 142 ~~D~~~I~agLGGGTGSG~apvia~~ake~g~---~tvavvtlP~~----------------~Eg~--~r~~nA~~~l~~ 200 (415)
.---|..=.-|.|-+ ..+ +.+.||+.|. +.|-++..|.. .|.+ .|.+..++-|.+
T Consensus 68 ~~~~F~~ETtLS~~s---~~~-~ik~Ak~~Gf~I~L~y~~i~~~elavERVk~RVa~GGH~IpED~Ir~RY~rsle~l~~ 143 (187)
T COG4185 68 LGRPFIAETTLSGPS---ILE-LIKTAKAAGFYIVLNYIVIDSVELAVERVKLRVAKGGHDIPEDKIRRRYRRSLELLAQ 143 (187)
T ss_pred cCCCcceEEeeccch---HHH-HHHHHHhCCeEEEEEEEEeCcHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHH
Confidence 444444444455433 222 3355677663 33434434411 2332 234445566666
Q ss_pred HHhhCCEEEEEeCchhhh
Q 014946 201 LQKNVDTLIVIPNDRLLD 218 (415)
Q Consensus 201 L~e~~D~viv~dNd~L~~ 218 (415)
..+.+|..++.||..+.-
T Consensus 144 ~l~l~dr~~IydNS~~~~ 161 (187)
T COG4185 144 ALTLADRATIYDNSRLAP 161 (187)
T ss_pred HHhhcceeEEecCCCCCc
Confidence 677899999999987653
No 245
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=57.93 E-value=35 Score=31.32 Aligned_cols=86 Identities=19% Similarity=0.157 Sum_probs=49.6
Q ss_pred CCCeEEEEee-CcchHHHHHHHHHcCCCceEEEEEECCHHHHhcCCC-----CCCeeccccccccCCCCCCchhhHHHHH
Q 014946 57 ETAKIKVVGV-GGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSAA-----ENPLQIGDLLTRGLGTGGNPLLGEQAAE 130 (415)
Q Consensus 57 ~~~~i~vIGv-GgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~~~-----~~ki~ig~~~t~G~GaG~n~~~G~~~ae 130 (415)
..++++|.|. |+.|..++.+|.++|. +.+.++.+...+..... ..++.+=. .|..- .+..+
T Consensus 4 ~~~~ilItGasg~iG~~l~~~l~~~g~---~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~---------~D~~~-~~~~~ 70 (246)
T PRK05653 4 QGKTALVTGASRGIGRAIALRLAADGA---KVVIYDSNEEAAEALAAELRAAGGEARVLV---------FDVSD-EAAVR 70 (246)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEeCChhHHHHHHHHHHhcCCceEEEE---------ccCCC-HHHHH
Confidence 4468999996 8899999999998875 35777776655432110 11111100 01110 12234
Q ss_pred HHHHHHHHHhcCCCEEEEeccCCCC
Q 014946 131 ESKEVIANALKGSDLVFITAGMGGG 155 (415)
Q Consensus 131 e~~e~I~~~le~~D~~~I~agLGGG 155 (415)
...+++...+..+|.|+.++|....
T Consensus 71 ~~~~~~~~~~~~id~vi~~ag~~~~ 95 (246)
T PRK05653 71 ALIEAAVEAFGALDILVNNAGITRD 95 (246)
T ss_pred HHHHHHHHHhCCCCEEEECCCcCCC
Confidence 4455566666778998888765433
No 246
>KOG2337 consensus Ubiquitin activating E1 enzyme-like protein [Coenzyme transport and metabolism]
Probab=57.91 E-value=24 Score=37.99 Aligned_cols=34 Identities=24% Similarity=0.478 Sum_probs=28.5
Q ss_pred CCCCCCeEEEEeeCcchHHHHHHHHHcCCCceEE
Q 014946 54 APMETAKIKVVGVGGGGNNAVNRMIGSGLQGVDF 87 (415)
Q Consensus 54 ~~~~~~~i~vIGvGgaG~niv~~l~~~~~~~v~~ 87 (415)
+-....|.++.|.|.-||+++..|+.-|++.+.|
T Consensus 336 d~is~~KcLLLGAGTLGC~VAR~Ll~WGvRhITF 369 (669)
T KOG2337|consen 336 DIISQTKCLLLGAGTLGCNVARNLLGWGVRHITF 369 (669)
T ss_pred hhhhcceeEEecCcccchHHHHHHHhhccceEEE
Confidence 3446789999999999999999999988776554
No 247
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=57.81 E-value=39 Score=34.75 Aligned_cols=103 Identities=17% Similarity=0.244 Sum_probs=57.1
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHhcCCCCCCeeccccccccCCCCCCchhhH-H-H-HHHHHHH
Q 014946 59 AKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSAAENPLQIGDLLTRGLGTGGNPLLGE-Q-A-AEESKEV 135 (415)
Q Consensus 59 ~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~~~~~ki~ig~~~t~G~GaG~n~~~G~-~-~-aee~~e~ 135 (415)
|||.++|.|.-|+-.++.++... +.+.+.+|.+....+.+..+..+.+- ..|.+ +....++. . . .... ++
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~--g~~V~~vd~~~~~v~aL~~qglY~v~---~~~~~-~~~~~i~~v~~~~~~~~-~~ 73 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADN--GFEVTFVDVNQELIDALNKRKSYQVI---VVGEN-EQVETVSNVSAINSADE-EA 73 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhC--CCeEEEEECCHHHHHHHhcCCCeEEE---EecCC-CcEEEEeeEeeeCCCCH-HH
Confidence 78999999999987777776543 35577888877777776555432110 11111 11111110 0 1 1122 66
Q ss_pred HHHHhcCCCEEEEeccCCCCccCChHHHHHHHHHH
Q 014946 136 IANALKGSDLVFITAGMGGGTGSGAAPVVAQIAKE 170 (415)
Q Consensus 136 I~~~le~~D~~~I~agLGGGTGSG~apvia~~ake 170 (415)
+.+.+.+.|++.++.+ ...=..+.+.|++.+++
T Consensus 74 ~~~~~~~~dlvt~~v~--~~~~~s~~~~l~~~L~~ 106 (381)
T PRK02318 74 VIEAIAEADLVTTAVG--PNILPFIAPLIAKGLKK 106 (381)
T ss_pred HHHHhcCCCEEEeCCC--cccchhHHHHHHHHHHH
Confidence 7777788896655543 11112355667776654
No 248
>PRK12862 malic enzyme; Reviewed
Probab=57.76 E-value=26 Score=39.67 Aligned_cols=40 Identities=13% Similarity=0.355 Sum_probs=32.8
Q ss_pred CCCCCCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECC
Q 014946 54 APMETAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTD 93 (415)
Q Consensus 54 ~~~~~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD 93 (415)
-+....||.+.|.|.||..+++.|...|+..-++|.+|+.
T Consensus 189 ~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~ 228 (763)
T PRK12862 189 KDIEDVKLVASGAGAAALACLDLLVSLGVKRENIWVTDIK 228 (763)
T ss_pred CChhhcEEEEEChhHHHHHHHHHHHHcCCCcccEEEEcCC
Confidence 4556789999999999999999999988754467888753
No 249
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=57.66 E-value=21 Score=38.09 Aligned_cols=37 Identities=16% Similarity=0.256 Sum_probs=30.2
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHh
Q 014946 59 AKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALL 98 (415)
Q Consensus 59 ~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~ 98 (415)
.+|.|||+|--|.+++.+|.++|.+ ..+.|-+.+..+
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~---V~v~dr~~~~~~ 38 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFK---ISVYNRTYEKTE 38 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCe---EEEEeCCHHHHH
Confidence 4799999999999999999999863 556677766644
No 250
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=57.27 E-value=7.9 Score=43.29 Aligned_cols=44 Identities=20% Similarity=0.232 Sum_probs=34.1
Q ss_pred CCCCCCCeEEEEeeCcchHHHHHHHH-HcCCCceEEEEEECCHHHHhc
Q 014946 53 FAPMETAKIKVVGVGGGGNNAVNRMI-GSGLQGVDFYAINTDSQALLQ 99 (415)
Q Consensus 53 ~~~~~~~~i~vIGvGgaG~niv~~l~-~~~~~~v~~iainTD~~~L~~ 99 (415)
..+..-.||.|||-|--|..|+-.+. ..|+ +...+|.+.+.|++
T Consensus 304 ~~~~~i~~v~ViGaG~mG~giA~~~a~~~G~---~V~l~d~~~~~l~~ 348 (708)
T PRK11154 304 AKPRPVNKVGVLGGGLMGGGIAYVTATKAGL---PVRIKDINPQGINH 348 (708)
T ss_pred CCCCcccEEEEECCchhhHHHHHHHHHHcCC---eEEEEeCCHHHHHH
Confidence 34455678999999999999999887 6674 46678888777654
No 251
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=56.82 E-value=59 Score=28.25 Aligned_cols=91 Identities=22% Similarity=0.288 Sum_probs=45.5
Q ss_pred CCeEEEEeeCcchHHHHHHHHHc----CCC--ceEEEEEECCH-HHHhcCCCCCCeeccccccccCCCCCCchhhHHHHH
Q 014946 58 TAKIKVVGVGGGGNNAVNRMIGS----GLQ--GVDFYAINTDS-QALLQSAAENPLQIGDLLTRGLGTGGNPLLGEQAAE 130 (415)
Q Consensus 58 ~~~i~vIGvGgaG~niv~~l~~~----~~~--~v~~iainTD~-~~L~~~~~~~ki~ig~~~t~G~GaG~n~~~G~~~ae 130 (415)
+-+|-++|-|+.+..+.+...+. +.. ....++.++|. ..+.. ..+.+ +
T Consensus 35 gg~i~~~G~G~S~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----------------~~~~~--------~ 89 (138)
T PF13580_consen 35 GGRIFVCGNGHSAAIASHFAADLGGLFGVNRILLPAIALNDDALTAISN-----------------DLEYD--------E 89 (138)
T ss_dssp T--EEEEESTHHHHHHHHHHHHHHCHSSSTSSS-SEEETTSTHHHHHHH-----------------HTTGG--------G
T ss_pred CCEEEEEcCchhhhHHHHHHHHHhcCcCCCcccccccccccchHhhhhc-----------------ccchh--------h
Confidence 56799999999887754444332 111 13345555554 01100 01111 1
Q ss_pred HHHHHHHHH--hcCCCEEEEeccCCCCccCChHHH---HHHHHHHhCCceEEEE
Q 014946 131 ESKEVIANA--LKGSDLVFITAGMGGGTGSGAAPV---VAQIAKEAGYLTVGVV 179 (415)
Q Consensus 131 e~~e~I~~~--le~~D~~~I~agLGGGTGSG~apv---ia~~ake~g~~tvavv 179 (415)
...+++.+. ++.-|+++++.. ||-.|. .++.+|+.|..|+++.
T Consensus 90 ~~~~~~~~~~~~~~gDvli~iS~------SG~s~~vi~a~~~Ak~~G~~vIalT 137 (138)
T PF13580_consen 90 GFARQLLALYDIRPGDVLIVISN------SGNSPNVIEAAEEAKERGMKVIALT 137 (138)
T ss_dssp THHHHHHHHTT--TT-EEEEEES------SS-SHHHHHHHHHHHHTT-EEEEEE
T ss_pred HHHHHHHHHcCCCCCCEEEEECC------CCCCHHHHHHHHHHHHCCCEEEEEe
Confidence 223445555 566788877754 333344 4577888999999874
No 252
>PRK12939 short chain dehydrogenase; Provisional
Probab=56.79 E-value=54 Score=30.36 Aligned_cols=83 Identities=19% Similarity=0.176 Sum_probs=49.4
Q ss_pred CCCCeEEEEee-CcchHHHHHHHHHcCCCceEEEEEECCHHHHhcCCC-----CCCe--eccccccccCCCCCCchhhHH
Q 014946 56 METAKIKVVGV-GGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSAA-----ENPL--QIGDLLTRGLGTGGNPLLGEQ 127 (415)
Q Consensus 56 ~~~~~i~vIGv-GgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~~~-----~~ki--~ig~~~t~G~GaG~n~~~G~~ 127 (415)
+.+.++.|.|. |+.|..++..|.+.|. +.++++.+...+..... ..++ .... + .+ .+
T Consensus 5 ~~~~~vlItGa~g~iG~~la~~l~~~G~---~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D-l-------~~----~~ 69 (250)
T PRK12939 5 LAGKRALVTGAARGLGAAFAEALAEAGA---TVAFNDGLAAEARELAAALEAAGGRAHAIAAD-L-------AD----PA 69 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcc-C-------CC----HH
Confidence 34678999996 8999999999998774 45666666554433210 0111 1110 0 11 23
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeccCC
Q 014946 128 AAEESKEVIANALKGSDLVFITAGMG 153 (415)
Q Consensus 128 ~aee~~e~I~~~le~~D~~~I~agLG 153 (415)
..+...+++.+....+|.++.++|..
T Consensus 70 ~~~~~~~~~~~~~~~id~vi~~ag~~ 95 (250)
T PRK12939 70 SVQRFFDAAAAALGGLDGLVNNAGIT 95 (250)
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 34445556666667899988887644
No 253
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=56.79 E-value=26 Score=36.05 Aligned_cols=27 Identities=26% Similarity=0.302 Sum_probs=23.7
Q ss_pred CCCeEEEEe-eCcchHHHHHHHHHcCCC
Q 014946 57 ETAKIKVVG-VGGGGNNAVNRMIGSGLQ 83 (415)
Q Consensus 57 ~~~~i~vIG-vGgaG~niv~~l~~~~~~ 83 (415)
..++|.||| .|.-|+.++..|.+.|..
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~ 124 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQ 124 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCCe
Confidence 458899999 999999999999998843
No 254
>PRK01215 competence damage-inducible protein A; Provisional
Probab=56.76 E-value=1.2e+02 Score=29.75 Aligned_cols=37 Identities=24% Similarity=0.262 Sum_probs=27.0
Q ss_pred HHHHHHHHHhcCCCEEEEeccCCCCccCChHHHHHHHHHHh
Q 014946 131 ESKEVIANALKGSDLVFITAGMGGGTGSGAAPVVAQIAKEA 171 (415)
Q Consensus 131 e~~e~I~~~le~~D~~~I~agLGGGTGSG~apvia~~ake~ 171 (415)
+..+.++++++.+|+|+++ ||+|.|---+..+.+.++
T Consensus 51 ~I~~~l~~a~~~~DlVItt----GG~g~t~dD~t~eaia~~ 87 (264)
T PRK01215 51 EIVSAFREAIDRADVVVST----GGLGPTYDDKTNEGFAKA 87 (264)
T ss_pred HHHHHHHHHhcCCCEEEEe----CCCcCChhhhHHHHHHHH
Confidence 4556677778889988887 678888777766666664
No 255
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=56.74 E-value=88 Score=29.59 Aligned_cols=33 Identities=24% Similarity=0.453 Sum_probs=26.5
Q ss_pred CeEEEEee-CcchHHHHHHHHHcCCCceEEEEEEC
Q 014946 59 AKIKVVGV-GGGGNNAVNRMIGSGLQGVDFYAINT 92 (415)
Q Consensus 59 ~~i~vIGv-GgaG~niv~~l~~~~~~~v~~iainT 92 (415)
|||.|||- |.+|+.|++...+.|.+ |-+++=|.
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHe-VTAivRn~ 34 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHE-VTAIVRNA 34 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCe-eEEEEeCh
Confidence 79999996 78999999999998854 66655554
No 256
>PRK05875 short chain dehydrogenase; Provisional
Probab=56.67 E-value=57 Score=30.99 Aligned_cols=40 Identities=15% Similarity=0.308 Sum_probs=30.6
Q ss_pred CCCCeEEEEee-CcchHHHHHHHHHcCCCceEEEEEECCHHHHh
Q 014946 56 METAKIKVVGV-GGGGNNAVNRMIGSGLQGVDFYAINTDSQALL 98 (415)
Q Consensus 56 ~~~~~i~vIGv-GgaG~niv~~l~~~~~~~v~~iainTD~~~L~ 98 (415)
+.+.+++|.|. |+.|..++.+|.+.|. +.++++.+...+.
T Consensus 5 ~~~k~vlItGasg~IG~~la~~l~~~G~---~V~~~~r~~~~~~ 45 (276)
T PRK05875 5 FQDRTYLVTGGGSGIGKGVAAGLVAAGA---AVMIVGRNPDKLA 45 (276)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC---eEEEEeCCHHHHH
Confidence 55678999997 8999999999999875 4566666655443
No 257
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=56.64 E-value=11 Score=42.35 Aligned_cols=42 Identities=17% Similarity=0.196 Sum_probs=33.6
Q ss_pred CCCCCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHhc
Q 014946 55 PMETAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQ 99 (415)
Q Consensus 55 ~~~~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~~ 99 (415)
+..-.+|.|||-|--|..|+-.+...|+ +.+.+|.|.+.|+.
T Consensus 310 ~~~i~~v~ViGaG~mG~gIA~~~a~~G~---~V~l~d~~~~~l~~ 351 (715)
T PRK11730 310 AKPVKQAAVLGAGIMGGGIAYQSASKGV---PVIMKDINQKALDL 351 (715)
T ss_pred ccccceEEEECCchhHHHHHHHHHhCCC---eEEEEeCCHHHHHH
Confidence 3344579999999999999999988875 47788888887753
No 258
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=56.38 E-value=22 Score=37.85 Aligned_cols=37 Identities=22% Similarity=0.279 Sum_probs=30.7
Q ss_pred eEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHhc
Q 014946 60 KIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQ 99 (415)
Q Consensus 60 ~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~~ 99 (415)
+|.+||+|--|.+++.+|.+.|. +.++.|-+.+..+.
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~---~V~v~drt~~~~~~ 37 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGF---TVSVYNRTPEKTDE 37 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCC---eEEEEeCCHHHHHH
Confidence 48899999999999999999985 46677887776654
No 259
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=56.24 E-value=1.3e+02 Score=30.44 Aligned_cols=37 Identities=16% Similarity=0.202 Sum_probs=28.2
Q ss_pred CCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHh
Q 014946 58 TAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALL 98 (415)
Q Consensus 58 ~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~ 98 (415)
.|||.|||.|.-|+-++..|.+.+ . +..|. -|....+
T Consensus 7 ~mkI~IiGaGa~G~alA~~La~~g-~-v~l~~--~~~~~~~ 43 (341)
T PRK12439 7 EPKVVVLGGGSWGTTVASICARRG-P-TLQWV--RSAETAD 43 (341)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCC-C-EEEEe--CCHHHHH
Confidence 489999999999999999999887 3 55554 3444443
No 260
>PRK05866 short chain dehydrogenase; Provisional
Probab=56.12 E-value=68 Score=31.28 Aligned_cols=85 Identities=18% Similarity=0.223 Sum_probs=50.5
Q ss_pred CCCCeEEEEee-CcchHHHHHHHHHcCCCceEEEEEECCHHHHhcCCCC-----CCe-eccccccccCCCCCCchhhHHH
Q 014946 56 METAKIKVVGV-GGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSAAE-----NPL-QIGDLLTRGLGTGGNPLLGEQA 128 (415)
Q Consensus 56 ~~~~~i~vIGv-GgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~~~~-----~ki-~ig~~~t~G~GaG~n~~~G~~~ 128 (415)
+...++.|.|. ||.|-.++..|.+.|. +.++++-+.+.++..... .++ .+--.+ .| .+.
T Consensus 38 ~~~k~vlItGasggIG~~la~~La~~G~---~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~~Dl-------~d----~~~ 103 (293)
T PRK05866 38 LTGKRILLTGASSGIGEAAAEQFARRGA---TVVAVARREDLLDAVADRITRAGGDAMAVPCDL-------SD----LDA 103 (293)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcCCcEEEEEccC-------CC----HHH
Confidence 34578999997 8889999999998874 456666555555432110 011 000000 12 233
Q ss_pred HHHHHHHHHHHhcCCCEEEEeccCCC
Q 014946 129 AEESKEVIANALKGSDLVFITAGMGG 154 (415)
Q Consensus 129 aee~~e~I~~~le~~D~~~I~agLGG 154 (415)
.++..+++.+.+...|.++-++|.+.
T Consensus 104 v~~~~~~~~~~~g~id~li~~AG~~~ 129 (293)
T PRK05866 104 VDALVADVEKRIGGVDILINNAGRSI 129 (293)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCCC
Confidence 44556666666778899988887543
No 261
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=55.98 E-value=39 Score=35.80 Aligned_cols=74 Identities=20% Similarity=0.202 Sum_probs=48.1
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHh--cCCCCCCeeccccccccCCCCCCchhhHHHHHHHHHHH
Q 014946 59 AKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALL--QSAAENPLQIGDLLTRGLGTGGNPLLGEQAAEESKEVI 136 (415)
Q Consensus 59 ~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~--~~~~~~ki~ig~~~t~G~GaG~n~~~G~~~aee~~e~I 136 (415)
.||+|+|=|..+..++..+.+.|+ +.+++++|..... ...++..+.+|.. +. .. -.+.+.|
T Consensus 3 ~kvLi~~~geia~~ii~a~~~~Gi---~~v~v~~~~d~~a~~~~~aD~~~~i~~~----------~~--~~--y~d~~~i 65 (472)
T PRK07178 3 KKILIANRGEIAVRIVRACAEMGI---RSVAIYSEADRHALHVKRADEAYSIGAD----------PL--AG--YLNPRRL 65 (472)
T ss_pred cEEEEECCcHHHHHHHHHHHHcCC---eEEEEeCCCccCCccHhhCCEEEEcCCC----------ch--hh--hcCHHHH
Confidence 489999999999999999999875 5788888765432 2234555666531 10 00 0134556
Q ss_pred HHHh--cCCCEEEEe
Q 014946 137 ANAL--KGSDLVFIT 149 (415)
Q Consensus 137 ~~~l--e~~D~~~I~ 149 (415)
.+.. +++|+++-.
T Consensus 66 ~~~a~~~~~D~I~pg 80 (472)
T PRK07178 66 VNLAVETGCDALHPG 80 (472)
T ss_pred HHHHHHHCCCEEEeC
Confidence 6655 378988753
No 262
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=55.94 E-value=32 Score=35.27 Aligned_cols=53 Identities=13% Similarity=0.085 Sum_probs=32.2
Q ss_pred eecCCcchHHHHHHHHhcccccc-------cCccccccceEEeecCCCCCHHHHHHHHHH
Q 014946 276 GVSSSKNRAEEAAEQATLAPLIG-------SSIQSATGVVYNITGGKDITLQEVNRVSQV 328 (415)
Q Consensus 276 G~a~g~~ra~~A~~~Al~spll~-------~~i~~a~g~Lv~I~gg~disl~ev~~i~~~ 328 (415)
|+..-+.+...-.++.|..|-+. ...+.+....+++....+++.+++.++++.
T Consensus 216 g~t~EE~K~~~E~~KIL~~~~l~VsatcvRVPV~~gHs~sv~ve~~~~~~~~~~~~~l~~ 275 (347)
T PRK06728 216 DFTFEEVKMIQETKKILEDPNLKMAATCVRVPVISGHSESVYIELEKEATVAEIKEVLFD 275 (347)
T ss_pred CccHHHHHHHHHHHHHhCCCCCcEEEEEEecceeccEEEEEEEEECCCCCHHHHHHHHHc
Confidence 44332333333355666545332 234567777778877778999998888753
No 263
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=55.58 E-value=57 Score=32.44 Aligned_cols=38 Identities=16% Similarity=0.354 Sum_probs=28.8
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHhc
Q 014946 59 AKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQ 99 (415)
Q Consensus 59 ~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~~ 99 (415)
|||.|||.|.-|+.+...|.+.|. +|.+| +.|.+..+.
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~g~-~V~l~--~r~~~~~~~ 38 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSKKI-SVNLW--GRNHTTFES 38 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCC-eEEEE--ecCHHHHHH
Confidence 689999999999999999998873 46544 455554443
No 264
>PRK12861 malic enzyme; Reviewed
Probab=55.44 E-value=22 Score=40.17 Aligned_cols=40 Identities=13% Similarity=0.346 Sum_probs=32.6
Q ss_pred CCCCCCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECC
Q 014946 54 APMETAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTD 93 (415)
Q Consensus 54 ~~~~~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD 93 (415)
-+....||.+.|.|.||..+++.|...|+..-++|.+|..
T Consensus 185 k~l~d~~iv~~GAGaAg~~ia~~l~~~G~~~~~i~~~D~~ 224 (764)
T PRK12861 185 KSIKEVKVVTSGAGAAALACLDLLVDLGLPVENIWVTDIE 224 (764)
T ss_pred CChhHcEEEEECHhHHHHHHHHHHHHcCCChhhEEEEcCC
Confidence 3445789999999999999999999988753477888753
No 265
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=55.41 E-value=22 Score=40.15 Aligned_cols=40 Identities=20% Similarity=0.356 Sum_probs=32.8
Q ss_pred CCCCCCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECC
Q 014946 54 APMETAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTD 93 (415)
Q Consensus 54 ~~~~~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD 93 (415)
-+....||.+.|.|.||..+++.|...|+..-++|.+|+.
T Consensus 181 ~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~ 220 (752)
T PRK07232 181 KKIEDVKIVVSGAGAAAIACLNLLVALGAKKENIIVCDSK 220 (752)
T ss_pred CChhhcEEEEECccHHHHHHHHHHHHcCCCcccEEEEcCC
Confidence 4556789999999999999999999988753467888763
No 266
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=55.40 E-value=21 Score=36.09 Aligned_cols=40 Identities=25% Similarity=0.327 Sum_probs=32.2
Q ss_pred CCCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHhc
Q 014946 57 ETAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQ 99 (415)
Q Consensus 57 ~~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~~ 99 (415)
+-.+|.|||.|--|..|+..+...|. +....|.+.+.++.
T Consensus 6 ~i~~VaVIGaG~MG~giA~~~a~aG~---~V~l~D~~~~~~~~ 45 (321)
T PRK07066 6 DIKTFAAIGSGVIGSGWVARALAHGL---DVVAWDPAPGAEAA 45 (321)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCC---eEEEEeCCHHHHHH
Confidence 34679999999999999999998875 46678887776543
No 267
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=55.06 E-value=23 Score=29.18 Aligned_cols=91 Identities=22% Similarity=0.399 Sum_probs=56.7
Q ss_pred EEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHhcCCCC-CCeeccccccccCCCCCCchhhHHHHHHHHHHHHH-
Q 014946 61 IKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSAAE-NPLQIGDLLTRGLGTGGNPLLGEQAAEESKEVIAN- 138 (415)
Q Consensus 61 i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~~~~-~ki~ig~~~t~G~GaG~n~~~G~~~aee~~e~I~~- 138 (415)
|.|+|.|..|-.+++.|.+.+ .+++.++.|.+..+..... -.+..|. ..++ +.+++
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~---~~vvvid~d~~~~~~~~~~~~~~i~gd--------~~~~-----------~~l~~a 58 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGG---IDVVVIDRDPERVEELREEGVEVIYGD--------ATDP-----------EVLERA 58 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTT---SEEEEEESSHHHHHHHHHTTSEEEES---------TTSH-----------HHHHHT
T ss_pred eEEEcCCHHHHHHHHHHHhCC---CEEEEEECCcHHHHHHHhccccccccc--------chhh-----------hHHhhc
Confidence 679999999999999999955 5699999999876654222 2233332 1122 22222
Q ss_pred HhcCCCEEEEeccCCCCccCChHH-HHHHHHHHhCC--ceEEEE
Q 014946 139 ALKGSDLVFITAGMGGGTGSGAAP-VVAQIAKEAGY--LTVGVV 179 (415)
Q Consensus 139 ~le~~D~~~I~agLGGGTGSG~ap-via~~ake~g~--~tvavv 179 (415)
-+++++.++++.. .-..- .++..+|+++. .+++.+
T Consensus 59 ~i~~a~~vv~~~~------~d~~n~~~~~~~r~~~~~~~ii~~~ 96 (116)
T PF02254_consen 59 GIEKADAVVILTD------DDEENLLIALLARELNPDIRIIARV 96 (116)
T ss_dssp TGGCESEEEEESS------SHHHHHHHHHHHHHHTTTSEEEEEE
T ss_pred CccccCEEEEccC------CHHHHHHHHHHHHHHCCCCeEEEEE
Confidence 4678998888755 33333 36788888543 455443
No 268
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=54.94 E-value=89 Score=29.02 Aligned_cols=82 Identities=16% Similarity=0.188 Sum_probs=49.1
Q ss_pred CCCeEEEEee-CcchHHHHHHHHHcCCCceEEEEEECCHHHHhcCCC-----CCC--eeccccccccCCCCCCchhhHHH
Q 014946 57 ETAKIKVVGV-GGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSAA-----ENP--LQIGDLLTRGLGTGGNPLLGEQA 128 (415)
Q Consensus 57 ~~~~i~vIGv-GgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~~~-----~~k--i~ig~~~t~G~GaG~n~~~G~~~ 128 (415)
...+++|.|. |+.|..++.+|.+.|. +.+.++.+...+..... ..+ +.... + .|+ +.
T Consensus 3 ~~~~vlItG~sg~iG~~la~~l~~~g~---~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D-l-------~~~----~~ 67 (258)
T PRK12429 3 KGKVALVTGAASGIGLEIALALAKEGA---KVVIADLNDEAAAAAAEALQKAGGKAIGVAMD-V-------TDE----EA 67 (258)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC---eEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcC-C-------CCH----HH
Confidence 3467999995 8999999999998764 46666665554432110 011 11111 0 122 23
Q ss_pred HHHHHHHHHHHhcCCCEEEEeccCC
Q 014946 129 AEESKEVIANALKGSDLVFITAGMG 153 (415)
Q Consensus 129 aee~~e~I~~~le~~D~~~I~agLG 153 (415)
.++..+++.+.....|.++-+++..
T Consensus 68 ~~~~~~~~~~~~~~~d~vi~~a~~~ 92 (258)
T PRK12429 68 INAGIDYAVETFGGVDILVNNAGIQ 92 (258)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCC
Confidence 3445556666667899988887754
No 269
>PRK06194 hypothetical protein; Provisional
Probab=54.73 E-value=53 Score=31.40 Aligned_cols=87 Identities=17% Similarity=0.196 Sum_probs=50.2
Q ss_pred CCCCeEEEEee-CcchHHHHHHHHHcCCCceEEEEEECCHHHHhcCC----C-CCCeeccccccccCCCCCCchhhHHHH
Q 014946 56 METAKIKVVGV-GGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSA----A-ENPLQIGDLLTRGLGTGGNPLLGEQAA 129 (415)
Q Consensus 56 ~~~~~i~vIGv-GgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~~----~-~~ki~ig~~~t~G~GaG~n~~~G~~~a 129 (415)
+...+++|.|- |+-|..++.+|.+.|. +.++++-+...+.... . ..++.. .. .|..- .+..
T Consensus 4 ~~~k~vlVtGasggIG~~la~~l~~~G~---~V~~~~r~~~~~~~~~~~~~~~~~~~~~----~~-----~D~~d-~~~~ 70 (287)
T PRK06194 4 FAGKVAVITGAASGFGLAFARIGAALGM---KLVLADVQQDALDRAVAELRAQGAEVLG----VR-----TDVSD-AAQV 70 (287)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHCCC---EEEEEeCChHHHHHHHHHHHhcCCeEEE----EE-----CCCCC-HHHH
Confidence 34567889885 7889999999998874 4566666554443321 1 111110 00 11111 1233
Q ss_pred HHHHHHHHHHhcCCCEEEEeccCCCC
Q 014946 130 EESKEVIANALKGSDLVFITAGMGGG 155 (415)
Q Consensus 130 ee~~e~I~~~le~~D~~~I~agLGGG 155 (415)
++..+++.+.....|.++-.||..+.
T Consensus 71 ~~~~~~~~~~~g~id~vi~~Ag~~~~ 96 (287)
T PRK06194 71 EALADAALERFGAVHLLFNNAGVGAG 96 (287)
T ss_pred HHHHHHHHHHcCCCCEEEECCCCCCC
Confidence 44455566666678999988887653
No 270
>PRK06180 short chain dehydrogenase; Provisional
Probab=54.65 E-value=71 Score=30.56 Aligned_cols=83 Identities=14% Similarity=0.065 Sum_probs=48.9
Q ss_pred CCeEEEEee-CcchHHHHHHHHHcCCCceEEEEEECCHHHHhcCCCC--CCeeccccccccCCCCCCchhhHHHHHHHHH
Q 014946 58 TAKIKVVGV-GGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSAAE--NPLQIGDLLTRGLGTGGNPLLGEQAAEESKE 134 (415)
Q Consensus 58 ~~~i~vIGv-GgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~~~~--~ki~ig~~~t~G~GaG~n~~~G~~~aee~~e 134 (415)
..+++|.|. |+.|..++.+|.+.|. +.++++.+...+...... .++.. .-.|..- .+..++..+
T Consensus 4 ~~~vlVtGasggiG~~la~~l~~~G~---~V~~~~r~~~~~~~l~~~~~~~~~~---------~~~D~~d-~~~~~~~~~ 70 (277)
T PRK06180 4 MKTWLITGVSSGFGRALAQAALAAGH---RVVGTVRSEAARADFEALHPDRALA---------RLLDVTD-FDAIDAVVA 70 (277)
T ss_pred CCEEEEecCCChHHHHHHHHHHhCcC---EEEEEeCCHHHHHHHHhhcCCCeeE---------EEccCCC-HHHHHHHHH
Confidence 456999997 7789999999988764 466777766665443211 11100 0011111 123344455
Q ss_pred HHHHHhcCCCEEEEeccCC
Q 014946 135 VIANALKGSDLVFITAGMG 153 (415)
Q Consensus 135 ~I~~~le~~D~~~I~agLG 153 (415)
++.+.+..+|.++-++|..
T Consensus 71 ~~~~~~~~~d~vv~~ag~~ 89 (277)
T PRK06180 71 DAEATFGPIDVLVNNAGYG 89 (277)
T ss_pred HHHHHhCCCCEEEECCCcc
Confidence 5666666789988887754
No 271
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=54.47 E-value=27 Score=34.83 Aligned_cols=30 Identities=17% Similarity=0.486 Sum_probs=24.0
Q ss_pred EEeeCcchHHHHHHHHHcCCCceEEEEEECC
Q 014946 63 VVGVGGGGNNAVNRMIGSGLQGVDFYAINTD 93 (415)
Q Consensus 63 vIGvGgaG~niv~~l~~~~~~~v~~iainTD 93 (415)
|||.|..|..++..|...++. -+.+.+|.+
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~-~el~L~Di~ 30 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIA-DEIVLIDIN 30 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCC-CEEEEEeCC
Confidence 689999999999999888764 356677763
No 272
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=54.41 E-value=21 Score=35.05 Aligned_cols=39 Identities=21% Similarity=0.263 Sum_probs=31.3
Q ss_pred CCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHhc
Q 014946 58 TAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQ 99 (415)
Q Consensus 58 ~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~~ 99 (415)
-.||.|||.|-.|..++..+...|. +.+.+|-|.+.++.
T Consensus 3 ~~kIaViGaG~mG~~iA~~la~~G~---~V~l~d~~~~~l~~ 41 (287)
T PRK08293 3 IKNVTVAGAGVLGSQIAFQTAFHGF---DVTIYDISDEALEK 41 (287)
T ss_pred ccEEEEECCCHHHHHHHHHHHhcCC---eEEEEeCCHHHHHH
Confidence 3589999999999999999988774 46677777776654
No 273
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=54.33 E-value=59 Score=30.48 Aligned_cols=85 Identities=15% Similarity=0.171 Sum_probs=49.9
Q ss_pred CCCCeEEEEee-CcchHHHHHHHHHcCCCceEEEEEECCHHHHhcCC----CC-CCeeccccccccCCCCCCchhhHHHH
Q 014946 56 METAKIKVVGV-GGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSA----AE-NPLQIGDLLTRGLGTGGNPLLGEQAA 129 (415)
Q Consensus 56 ~~~~~i~vIGv-GgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~~----~~-~ki~ig~~~t~G~GaG~n~~~G~~~a 129 (415)
..+.+++|.|. |+.|..++.+|.+.|. +.+.++.+...++... .. .++..= . .|.. -.+..
T Consensus 8 ~~~k~vlItGa~g~iG~~ia~~l~~~G~---~V~~~~r~~~~~~~~~~~i~~~~~~~~~~----~-----~D~~-~~~~~ 74 (255)
T PRK07523 8 LTGRRALVTGSSQGIGYALAEGLAQAGA---EVILNGRDPAKLAAAAESLKGQGLSAHAL----A-----FDVT-DHDAV 74 (255)
T ss_pred CCCCEEEEECCcchHHHHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHHHhcCceEEEE----E-----ccCC-CHHHH
Confidence 45678999996 8899999999998874 4566676665543311 00 011000 0 0111 02234
Q ss_pred HHHHHHHHHHhcCCCEEEEeccCC
Q 014946 130 EESKEVIANALKGSDLVFITAGMG 153 (415)
Q Consensus 130 ee~~e~I~~~le~~D~~~I~agLG 153 (415)
++..+++.+.+...|.++..+|..
T Consensus 75 ~~~~~~~~~~~~~~d~li~~ag~~ 98 (255)
T PRK07523 75 RAAIDAFEAEIGPIDILVNNAGMQ 98 (255)
T ss_pred HHHHHHHHHhcCCCCEEEECCCCC
Confidence 445556666667789888877654
No 274
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=54.31 E-value=48 Score=34.85 Aligned_cols=48 Identities=23% Similarity=0.257 Sum_probs=32.0
Q ss_pred HHHHHHHHHh--cCCCEEEEeccCCCCccCChHHHHHHHHHHhCCceEEEEe
Q 014946 131 ESKEVIANAL--KGSDLVFITAGMGGGTGSGAAPVVAQIAKEAGYLTVGVVT 180 (415)
Q Consensus 131 e~~e~I~~~l--e~~D~~~I~agLGGGTGSG~apvia~~ake~g~~tvavvt 180 (415)
+.-.+|.+.| ++.|+++++..-|=-|=+ +..+++...+.|++++-+.+
T Consensus 323 ~~g~eIa~~Lk~dgVDAVILTstCgtC~r~--~a~m~keiE~~GiPvv~~~~ 372 (431)
T TIGR01918 323 QFAKEFVVELKQGGVDAVILTSTUGTCTRC--GATMVKEIERAGIPVVHMCT 372 (431)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCCcchhH--HHHHHHHHHHcCCCEEEEee
Confidence 4444454444 478999999776644444 44577777778988776655
No 275
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=54.30 E-value=69 Score=29.52 Aligned_cols=84 Identities=20% Similarity=0.223 Sum_probs=50.0
Q ss_pred CCCCeEEEEee-CcchHHHHHHHHHcCCCceEEEEEECCHHHHhcCCC--CCCee-ccccccccCCCCCCchhhHHHHHH
Q 014946 56 METAKIKVVGV-GGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSAA--ENPLQ-IGDLLTRGLGTGGNPLLGEQAAEE 131 (415)
Q Consensus 56 ~~~~~i~vIGv-GgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~~~--~~ki~-ig~~~t~G~GaG~n~~~G~~~aee 131 (415)
++..++.|.|. |+.|..++.+|.+.|. ..+..+.+...++.... ..++. +.- |-. -.+..++
T Consensus 4 ~~~~~vlItGa~g~iG~~la~~l~~~g~---~v~~~~~~~~~~~~~~~~~~~~~~~~~~----------D~~-~~~~~~~ 69 (245)
T PRK12936 4 LSGRKALVTGASGGIGEEIARLLHAQGA---IVGLHGTRVEKLEALAAELGERVKIFPA----------NLS-DRDEVKA 69 (245)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC---EEEEEcCCHHHHHHHHHHhCCceEEEEc----------cCC-CHHHHHH
Confidence 34568999985 7789999999998874 34455555555543211 11111 100 110 1234455
Q ss_pred HHHHHHHHhcCCCEEEEeccCC
Q 014946 132 SKEVIANALKGSDLVFITAGMG 153 (415)
Q Consensus 132 ~~e~I~~~le~~D~~~I~agLG 153 (415)
..+++.+.+...|.++-++|.+
T Consensus 70 ~~~~~~~~~~~id~vi~~ag~~ 91 (245)
T PRK12936 70 LGQKAEADLEGVDILVNNAGIT 91 (245)
T ss_pred HHHHHHHHcCCCCEEEECCCCC
Confidence 5666777777899988887764
No 276
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=54.25 E-value=40 Score=34.44 Aligned_cols=37 Identities=32% Similarity=0.435 Sum_probs=31.0
Q ss_pred CCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHH
Q 014946 58 TAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQAL 97 (415)
Q Consensus 58 ~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L 97 (415)
.-++.|+|+||-|.-+|......+ .+.+|+++....+
T Consensus 167 G~~V~I~G~GGlGh~avQ~Aka~g---a~Via~~~~~~K~ 203 (339)
T COG1064 167 GKWVAVVGAGGLGHMAVQYAKAMG---AEVIAITRSEEKL 203 (339)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcC---CeEEEEeCChHHH
Confidence 578999999999999999988777 5688888866655
No 277
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=54.08 E-value=21 Score=36.35 Aligned_cols=33 Identities=18% Similarity=0.378 Sum_probs=27.3
Q ss_pred eEEEEeeCcchHHHHHHHHHcCC-------CceEEEEEEC
Q 014946 60 KIKVVGVGGGGNNAVNRMIGSGL-------QGVDFYAINT 92 (415)
Q Consensus 60 ~i~vIGvGgaG~niv~~l~~~~~-------~~v~~iainT 92 (415)
||.|||-|.-|..++..|...+. ..|..|..+-
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~ 40 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEE 40 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEecc
Confidence 68999999999999999987661 4588888854
No 278
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=54.01 E-value=19 Score=35.52 Aligned_cols=38 Identities=21% Similarity=0.346 Sum_probs=31.5
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHhc
Q 014946 59 AKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQ 99 (415)
Q Consensus 59 ~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~~ 99 (415)
.+|.|||.|..|+.++..|...|. +.+.+|.+.+.++.
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~---~V~~~d~~~~~~~~ 42 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGL---QVVLIDVMEGALER 42 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCC---eEEEEECCHHHHHH
Confidence 579999999999999999988874 46678887777654
No 279
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=53.91 E-value=32 Score=33.50 Aligned_cols=25 Identities=20% Similarity=0.186 Sum_probs=22.2
Q ss_pred CCeEEEEe-eCcchHHHHHHHHHcCC
Q 014946 58 TAKIKVVG-VGGGGNNAVNRMIGSGL 82 (415)
Q Consensus 58 ~~~i~vIG-vGgaG~niv~~l~~~~~ 82 (415)
.++|+|.| -|..|.+++.+|++.|.
T Consensus 4 ~~~ilVtGatGfIG~~l~~~L~~~g~ 29 (322)
T PLN02662 4 GKVVCVTGASGYIASWLVKLLLQRGY 29 (322)
T ss_pred CCEEEEECChHHHHHHHHHHHHHCCC
Confidence 57899999 59999999999999875
No 280
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=53.91 E-value=23 Score=35.86 Aligned_cols=34 Identities=18% Similarity=0.336 Sum_probs=27.7
Q ss_pred eEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHH
Q 014946 60 KIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQA 96 (415)
Q Consensus 60 ~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~ 96 (415)
||.|||-|+.|-.++..+.+.|+ +.++++.+..+
T Consensus 1 kililG~g~~~~~l~~aa~~~G~---~v~~~d~~~~~ 34 (380)
T TIGR01142 1 RVLLLGSGELGKEVAIEAQRLGV---EVIAVDRYANA 34 (380)
T ss_pred CEEEECCCHHHHHHHHHHHHcCC---EEEEEeCCCCC
Confidence 69999999999999998887764 57888886543
No 281
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=53.61 E-value=33 Score=32.19 Aligned_cols=33 Identities=24% Similarity=0.319 Sum_probs=26.3
Q ss_pred CCCCeEEEEeeCcchHHHHHHHHHcCCCceEEEE
Q 014946 56 METAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYA 89 (415)
Q Consensus 56 ~~~~~i~vIGvGgaG~niv~~l~~~~~~~v~~ia 89 (415)
..+.+++|||-|..|..-+..|++.|.. +..++
T Consensus 7 l~gk~vlVvGgG~va~rk~~~Ll~~ga~-VtVvs 39 (205)
T TIGR01470 7 LEGRAVLVVGGGDVALRKARLLLKAGAQ-LRVIA 39 (205)
T ss_pred cCCCeEEEECcCHHHHHHHHHHHHCCCE-EEEEc
Confidence 4467999999999999999999998853 44333
No 282
>PRK07825 short chain dehydrogenase; Provisional
Probab=53.36 E-value=65 Score=30.60 Aligned_cols=86 Identities=15% Similarity=0.098 Sum_probs=51.8
Q ss_pred CCCCeEEEEee-CcchHHHHHHHHHcCCCceEEEEEECCHHHHhcCCCCC-CeeccccccccCCCCCCchhhHHHHHHHH
Q 014946 56 METAKIKVVGV-GGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSAAEN-PLQIGDLLTRGLGTGGNPLLGEQAAEESK 133 (415)
Q Consensus 56 ~~~~~i~vIGv-GgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~~~~~-ki~ig~~~t~G~GaG~n~~~G~~~aee~~ 133 (415)
+...++.|.|- ||.|..++.+|.+.|. +.+++.-|...+....... ++..= -.|.. -.+..++..
T Consensus 3 ~~~~~ilVtGasggiG~~la~~l~~~G~---~v~~~~r~~~~~~~~~~~~~~~~~~---------~~D~~-~~~~~~~~~ 69 (273)
T PRK07825 3 LRGKVVAITGGARGIGLATARALAALGA---RVAIGDLDEALAKETAAELGLVVGG---------PLDVT-DPASFAAFL 69 (273)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC---EEEEEECCHHHHHHHHHHhccceEE---------EccCC-CHHHHHHHH
Confidence 34568999997 7788899999998774 4566666766654421110 11100 01111 123345556
Q ss_pred HHHHHHhcCCCEEEEeccCCC
Q 014946 134 EVIANALKGSDLVFITAGMGG 154 (415)
Q Consensus 134 e~I~~~le~~D~~~I~agLGG 154 (415)
+++.+.....|.++-.+|.+.
T Consensus 70 ~~~~~~~~~id~li~~ag~~~ 90 (273)
T PRK07825 70 DAVEADLGPIDVLVNNAGVMP 90 (273)
T ss_pred HHHHHHcCCCCEEEECCCcCC
Confidence 667777778899888887653
No 283
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=53.11 E-value=1.2e+02 Score=29.71 Aligned_cols=30 Identities=20% Similarity=0.410 Sum_probs=24.0
Q ss_pred CeEEEEe-eCcchHHHHHHHHHcCCCceEEEEEE
Q 014946 59 AKIKVVG-VGGGGNNAVNRMIGSGLQGVDFYAIN 91 (415)
Q Consensus 59 ~~i~vIG-vGgaG~niv~~l~~~~~~~v~~iain 91 (415)
|||+|+| -|..|..++.+|.+.|. +.++++
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g~---~V~~~~ 31 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQNGH---DVVILD 31 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHHCCC---eEEEEe
Confidence 6899999 59999999999998874 344554
No 284
>PRK07831 short chain dehydrogenase; Provisional
Probab=52.91 E-value=1.3e+02 Score=28.38 Aligned_cols=86 Identities=16% Similarity=0.235 Sum_probs=49.8
Q ss_pred CCCCCeEEEEee-C-cchHHHHHHHHHcCCCceEEEEEECCHHHHhcCCC-------CCCeeccccccccCCCCCCchhh
Q 014946 55 PMETAKIKVVGV-G-GGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSAA-------ENPLQIGDLLTRGLGTGGNPLLG 125 (415)
Q Consensus 55 ~~~~~~i~vIGv-G-gaG~niv~~l~~~~~~~v~~iainTD~~~L~~~~~-------~~ki~ig~~~t~G~GaG~n~~~G 125 (415)
.+.+.++.|.|- | |.|..++..|.+.|.. .++++-+...++.... ..++.. .. .|.. -
T Consensus 14 ~~~~k~vlItG~sg~gIG~~ia~~l~~~G~~---V~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-----~Dl~-~ 80 (262)
T PRK07831 14 LLAGKVVLVTAAAGTGIGSATARRALEEGAR---VVISDIHERRLGETADELAAELGLGRVEA----VV-----CDVT-S 80 (262)
T ss_pred ccCCCEEEEECCCcccHHHHHHHHHHHcCCE---EEEEeCCHHHHHHHHHHHHHhcCCceEEE----EE-----ccCC-C
Confidence 344678999997 6 7999999999988753 5555655554433210 011110 00 0111 1
Q ss_pred HHHHHHHHHHHHHHhcCCCEEEEeccCC
Q 014946 126 EQAAEESKEVIANALKGSDLVFITAGMG 153 (415)
Q Consensus 126 ~~~aee~~e~I~~~le~~D~~~I~agLG 153 (415)
.+..++..+++.+.....|.++-++|..
T Consensus 81 ~~~~~~~~~~~~~~~g~id~li~~ag~~ 108 (262)
T PRK07831 81 EAQVDALIDAAVERLGRLDVLVNNAGLG 108 (262)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 1234445555555566789998888764
No 285
>PRK06949 short chain dehydrogenase; Provisional
Probab=52.87 E-value=65 Score=30.06 Aligned_cols=84 Identities=13% Similarity=0.114 Sum_probs=49.3
Q ss_pred CCCCeEEEEee-CcchHHHHHHHHHcCCCceEEEEEECCHHHHhcCCC-----CCCeeccccccccCCCCCCchhhHHHH
Q 014946 56 METAKIKVVGV-GGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSAA-----ENPLQIGDLLTRGLGTGGNPLLGEQAA 129 (415)
Q Consensus 56 ~~~~~i~vIGv-GgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~~~-----~~ki~ig~~~t~G~GaG~n~~~G~~~a 129 (415)
....++.|.|. |+.|..++.+|.+.|. +.+++.-+...++.... ..++.. .. .|... .+..
T Consensus 7 ~~~k~ilItGasg~IG~~~a~~l~~~G~---~Vi~~~r~~~~~~~~~~~l~~~~~~~~~----~~-----~D~~~-~~~~ 73 (258)
T PRK06949 7 LEGKVALVTGASSGLGARFAQVLAQAGA---KVVLASRRVERLKELRAEIEAEGGAAHV----VS-----LDVTD-YQSI 73 (258)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHHhcCCcEEE----EE-----ecCCC-HHHH
Confidence 55678999996 8899999999998774 45666666655543211 111111 00 01111 1233
Q ss_pred HHHHHHHHHHhcCCCEEEEeccC
Q 014946 130 EESKEVIANALKGSDLVFITAGM 152 (415)
Q Consensus 130 ee~~e~I~~~le~~D~~~I~agL 152 (415)
++..+++.+.....|.++-++|.
T Consensus 74 ~~~~~~~~~~~~~~d~li~~ag~ 96 (258)
T PRK06949 74 KAAVAHAETEAGTIDILVNNSGV 96 (258)
T ss_pred HHHHHHHHHhcCCCCEEEECCCC
Confidence 44445555566688998888765
No 286
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=52.48 E-value=53 Score=34.36 Aligned_cols=48 Identities=21% Similarity=0.232 Sum_probs=35.0
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHH--HHhcCCCCCCeecc
Q 014946 59 AKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQ--ALLQSAAENPLQIG 109 (415)
Q Consensus 59 ~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~--~L~~~~~~~ki~ig 109 (415)
.||+|+|-|+.+..++..+.+.|+ +.+++++|.. +.....++..+.++
T Consensus 3 kkili~g~g~~~~~~~~aa~~lG~---~vv~~~~~~d~~a~~~~~aD~~~~~~ 52 (449)
T TIGR00514 3 DKILIANRGEIALRILRACKELGI---KTVAVHSTADRDALHVLLADEAVCIG 52 (449)
T ss_pred ceEEEeCCCHHHHHHHHHHHHcCC---eEEEEEChhhhcccccccCCEEEEcC
Confidence 489999999999999999988875 4888988533 33333455556654
No 287
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=52.13 E-value=39 Score=34.38 Aligned_cols=91 Identities=21% Similarity=0.275 Sum_probs=51.3
Q ss_pred CCeEEEEee-CcchHHHHHHHHHcCCCceEEEEEECCHHHHhcCCCCCCeeccccccccCCCCCCchhhHHHHHHHHHHH
Q 014946 58 TAKIKVVGV-GGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSAAENPLQIGDLLTRGLGTGGNPLLGEQAAEESKEVI 136 (415)
Q Consensus 58 ~~~i~vIGv-GgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~~~~~ki~ig~~~t~G~GaG~n~~~G~~~aee~~e~I 136 (415)
.+||.|+|. |-.|..++..|.+++.+.++...+-+..++ ..++.+. | .+...- +.+.+
T Consensus 4 ~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~~~a------G~~l~~~-------~--~~l~~~----~~~~~-- 62 (336)
T PRK05671 4 PLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASSESA------GHSVPFA-------G--KNLRVR----EVDSF-- 62 (336)
T ss_pred CCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECcccC------CCeeccC-------C--cceEEe----eCChH--
Confidence 379999998 778888888888766666665566443221 1222211 1 111110 00111
Q ss_pred HHHhcCCCEEEEeccCCCCccCChHHHHHHHHHHhCCceEE
Q 014946 137 ANALKGSDLVFITAGMGGGTGSGAAPVVAQIAKEAGYLTVG 177 (415)
Q Consensus 137 ~~~le~~D~~~I~agLGGGTGSG~apvia~~ake~g~~tva 177 (415)
.++++|.+|++.+ .|.+..++..+.+.|..+|-
T Consensus 63 --~~~~vD~vFla~p------~~~s~~~v~~~~~~G~~VID 95 (336)
T PRK05671 63 --DFSQVQLAFFAAG------AAVSRSFAEKARAAGCSVID 95 (336)
T ss_pred --HhcCCCEEEEcCC------HHHHHHHHHHHHHCCCeEEE
Confidence 1468999988643 45555566666666765543
No 288
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=52.13 E-value=24 Score=34.65 Aligned_cols=38 Identities=24% Similarity=0.337 Sum_probs=32.2
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHhc
Q 014946 59 AKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQ 99 (415)
Q Consensus 59 ~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~~ 99 (415)
.||.|||.|--|..++..+...|. +.+.+|.|.+.++.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~---~V~l~d~~~~~l~~ 41 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGY---DVTIVDVSEEILKN 41 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCC---eEEEEeCCHHHHHH
Confidence 579999999999999999998875 57788888887753
No 289
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=52.00 E-value=50 Score=34.60 Aligned_cols=40 Identities=18% Similarity=0.316 Sum_probs=34.5
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHhcCC
Q 014946 59 AKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSA 101 (415)
Q Consensus 59 ~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~~ 101 (415)
++|.|||+|-.|.=.+-.+..+|.+ .+-+|-|+...+.+.
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~---ViG~DIn~~~Vd~ln 49 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFK---VIGVDINQKKVDKLN 49 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCCc---eEeEeCCHHHHHHHh
Confidence 8999999999999998888888754 788999998887654
No 290
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=51.99 E-value=1.3e+02 Score=27.65 Aligned_cols=86 Identities=14% Similarity=0.102 Sum_probs=49.8
Q ss_pred CCCeEEEEe-eCcchHHHHHHHHHcCCCceEEEEEECCHHHHhc----CCCC-CCeeccccccccCCCCCCchhhHHHHH
Q 014946 57 ETAKIKVVG-VGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQ----SAAE-NPLQIGDLLTRGLGTGGNPLLGEQAAE 130 (415)
Q Consensus 57 ~~~~i~vIG-vGgaG~niv~~l~~~~~~~v~~iainTD~~~L~~----~~~~-~ki~ig~~~t~G~GaG~n~~~G~~~ae 130 (415)
..++++|.| -|+.|..++.+|.++|. ..+++..+...+.. +... .++.+ .. .|..- .+..+
T Consensus 5 ~~~~ilItGasg~iG~~l~~~l~~~g~---~V~~~~r~~~~~~~~~~~l~~~~~~~~~----~~-----~Dl~~-~~~~~ 71 (251)
T PRK12826 5 EGRVALVTGAARGIGRAIAVRLAADGA---EVIVVDICGDDAAATAELVEAAGGKARA----RQ-----VDVRD-RAALK 71 (251)
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHHhcCCeEEE----EE-----CCCCC-HHHHH
Confidence 346799999 57889999999998874 46677766443322 1111 11111 00 01111 12344
Q ss_pred HHHHHHHHHhcCCCEEEEeccCCCC
Q 014946 131 ESKEVIANALKGSDLVFITAGMGGG 155 (415)
Q Consensus 131 e~~e~I~~~le~~D~~~I~agLGGG 155 (415)
+..+++.+.+..+|+|+-++|..+.
T Consensus 72 ~~~~~~~~~~~~~d~vi~~ag~~~~ 96 (251)
T PRK12826 72 AAVAAGVEDFGRLDILVANAGIFPL 96 (251)
T ss_pred HHHHHHHHHhCCCCEEEECCCCCCC
Confidence 4555666666789998888876543
No 291
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=51.92 E-value=1.3e+02 Score=30.10 Aligned_cols=53 Identities=36% Similarity=0.468 Sum_probs=35.7
Q ss_pred hcCCCEEEEeccCCCCccCChHHHH---HHHHHHhCCceEEEEecCCCCchhhhHHHHHHHHHHHHhhCCEEEEEeC
Q 014946 140 LKGSDLVFITAGMGGGTGSGAAPVV---AQIAKEAGYLTVGVVTYPFSFEGRKRSSQALEAIERLQKNVDTLIVIPN 213 (415)
Q Consensus 140 le~~D~~~I~agLGGGTGSG~apvi---a~~ake~g~~tvavvtlP~~~Eg~~r~~nA~~~l~~L~e~~D~viv~dN 213 (415)
+..-|.++++ + .||-.|.+ ++.+|+.|..+++|.-.|.. .|.+.+|..|..+.
T Consensus 129 l~~~DvvI~I-S-----~SG~T~~vi~al~~Ak~~Ga~tI~IT~~~~s---------------~La~~aD~~I~~~~ 184 (299)
T PRK05441 129 LTAKDVVVGI-A-----ASGRTPYVIGALEYARERGALTIGISCNPGS---------------PLSKEADIAIEVVV 184 (299)
T ss_pred CCCCCEEEEE-e-----CCCCCHHHHHHHHHHHHCCCeEEEEECCCCC---------------hhhHhCCEEEEcCC
Confidence 4556776666 3 34555664 46778889999998755442 35678999888763
No 292
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=51.73 E-value=49 Score=32.91 Aligned_cols=34 Identities=21% Similarity=0.471 Sum_probs=25.7
Q ss_pred CeEEEEee-CcchHHHHHHHHHcCCCceEEEEEECCH
Q 014946 59 AKIKVVGV-GGGGNNAVNRMIGSGLQGVDFYAINTDS 94 (415)
Q Consensus 59 ~~i~vIGv-GgaG~niv~~l~~~~~~~v~~iainTD~ 94 (415)
|+|+|.|. |..|..++.+|++.+ +.+.++++-+.
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~~--~~~V~~~~r~~ 36 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILETT--DWEVYGMDMQT 36 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhCC--CCeEEEEeCcH
Confidence 58999997 999999999998763 23455665433
No 293
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=51.68 E-value=23 Score=30.65 Aligned_cols=38 Identities=34% Similarity=0.539 Sum_probs=26.0
Q ss_pred HHHHHHHHHhcCCCEEEEeccCCCCccCChHHHHHHHHHHhC
Q 014946 131 ESKEVIANALKGSDLVFITAGMGGGTGSGAAPVVAQIAKEAG 172 (415)
Q Consensus 131 e~~e~I~~~le~~D~~~I~agLGGGTGSG~apvia~~ake~g 172 (415)
+..+.|.++++++|+++.+ ||||-|-.-+..+..++.+
T Consensus 47 ~i~~~i~~~~~~~Dlvitt----GG~g~g~~D~t~~ai~~~g 84 (133)
T cd00758 47 SIRAALIEASREADLVLTT----GGTGVGRRDVTPEALAELG 84 (133)
T ss_pred HHHHHHHHHHhcCCEEEEC----CCCCCCCCcchHHHHHHhc
Confidence 4456667777789988876 6677776655666666654
No 294
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=51.51 E-value=10 Score=32.14 Aligned_cols=94 Identities=19% Similarity=0.265 Sum_probs=50.0
Q ss_pred eEEEEe-eCcchHHHHHHHHHcCCCceEEEEEECCHH-HHhcCCCCCCeeccccccccCCCCCCchhhHHHHHHHHHHHH
Q 014946 60 KIKVVG-VGGGGNNAVNRMIGSGLQGVDFYAINTDSQ-ALLQSAAENPLQIGDLLTRGLGTGGNPLLGEQAAEESKEVIA 137 (415)
Q Consensus 60 ~i~vIG-vGgaG~niv~~l~~~~~~~v~~iainTD~~-~L~~~~~~~ki~ig~~~t~G~GaG~n~~~G~~~aee~~e~I~ 137 (415)
||.||| -|-.|.-++..|.++ +..+.+.+-.... .-.....-.+...+. .+...- +.+ .
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~h--p~~e~~~~~~~~~~~g~~~~~~~~~~~~~---------~~~~~~----~~~----~ 61 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEH--PDFELVALVSSSRSAGKPLSEVFPHPKGF---------EDLSVE----DAD----P 61 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT--STEEEEEEEESTTTTTSBHHHTTGGGTTT---------EEEBEE----ETS----G
T ss_pred CEEEECCCCHHHHHHHHHHhcC--CCccEEEeeeeccccCCeeehhccccccc---------cceeEe----ecc----h
Confidence 789999 888888988888884 3456554433222 111111001100000 001000 001 2
Q ss_pred HHhcCCCEEEEeccCCCCccCChHHHHHHHHHHhCCceEEE
Q 014946 138 NALKGSDLVFITAGMGGGTGSGAAPVVAQIAKEAGYLTVGV 178 (415)
Q Consensus 138 ~~le~~D~~~I~agLGGGTGSG~apvia~~ake~g~~tvav 178 (415)
+.++++|.+|.+ |+++.+.-+++.+.+.|+.+|-.
T Consensus 62 ~~~~~~Dvvf~a------~~~~~~~~~~~~~~~~g~~ViD~ 96 (121)
T PF01118_consen 62 EELSDVDVVFLA------LPHGASKELAPKLLKAGIKVIDL 96 (121)
T ss_dssp HHHTTESEEEE-------SCHHHHHHHHHHHHHTTSEEEES
T ss_pred hHhhcCCEEEec------CchhHHHHHHHHHhhCCcEEEeC
Confidence 234789999987 55677777776666778766544
No 295
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=51.17 E-value=1.5e+02 Score=28.93 Aligned_cols=31 Identities=19% Similarity=0.288 Sum_probs=23.3
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCceEEEE
Q 014946 59 AKIKVVGVGGGGNNAVNRMIGSGLQGVDFYA 89 (415)
Q Consensus 59 ~~i~vIGvGgaG~niv~~l~~~~~~~v~~ia 89 (415)
+||.|||+|..|..++..+.+..-..+..++
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~ 32 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVI 32 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCCceEEEEE
Confidence 6899999999999999888765322344444
No 296
>PRK13243 glyoxylate reductase; Reviewed
Probab=51.10 E-value=20 Score=36.27 Aligned_cols=37 Identities=19% Similarity=0.295 Sum_probs=29.8
Q ss_pred CCCCCCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECC
Q 014946 54 APMETAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTD 93 (415)
Q Consensus 54 ~~~~~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD 93 (415)
....+.+|.|||+|..|..++.++...|. +.+++|..
T Consensus 146 ~~L~gktvgIiG~G~IG~~vA~~l~~~G~---~V~~~d~~ 182 (333)
T PRK13243 146 YDVYGKTIGIIGFGRIGQAVARRAKGFGM---RILYYSRT 182 (333)
T ss_pred cCCCCCEEEEECcCHHHHHHHHHHHHCCC---EEEEECCC
Confidence 34578999999999999999999988775 45666653
No 297
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=51.04 E-value=23 Score=34.66 Aligned_cols=38 Identities=24% Similarity=0.291 Sum_probs=31.9
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHhc
Q 014946 59 AKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQ 99 (415)
Q Consensus 59 ~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~~ 99 (415)
.||.|||.|--|..++..|.+.|. +.+.+|.|.+.++.
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~---~V~~~d~~~~~~~~ 39 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGF---QTTLVDIKQEQLES 39 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCC---cEEEEeCCHHHHHH
Confidence 369999999999999999998875 36678888888765
No 298
>PRK14982 acyl-ACP reductase; Provisional
Probab=51.02 E-value=56 Score=33.40 Aligned_cols=42 Identities=19% Similarity=0.402 Sum_probs=32.0
Q ss_pred CCCCeEEEEee-CcchHHHHHHHHHc-CCCceEEEEEECCHHHHhc
Q 014946 56 METAKIKVVGV-GGGGNNAVNRMIGS-GLQGVDFYAINTDSQALLQ 99 (415)
Q Consensus 56 ~~~~~i~vIGv-GgaG~niv~~l~~~-~~~~v~~iainTD~~~L~~ 99 (415)
..+.+++|+|- |..|..++.+|... +. .+.+.+|-+...+..
T Consensus 153 l~~k~VLVtGAtG~IGs~lar~L~~~~gv--~~lilv~R~~~rl~~ 196 (340)
T PRK14982 153 LSKATVAVVGATGDIGSAVCRWLDAKTGV--AELLLVARQQERLQE 196 (340)
T ss_pred cCCCEEEEEccChHHHHHHHHHHHhhCCC--CEEEEEcCCHHHHHH
Confidence 45688999999 89999999999754 43 357778877666654
No 299
>PRK07024 short chain dehydrogenase; Provisional
Probab=50.96 E-value=76 Score=29.87 Aligned_cols=83 Identities=18% Similarity=0.166 Sum_probs=48.4
Q ss_pred CeEEEEe-eCcchHHHHHHHHHcCCCceEEEEEECCHHHHhcCCC----CCCeeccccccccCCCCCCchhhHHHHHHHH
Q 014946 59 AKIKVVG-VGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSAA----ENPLQIGDLLTRGLGTGGNPLLGEQAAEESK 133 (415)
Q Consensus 59 ~~i~vIG-vGgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~~~----~~ki~ig~~~t~G~GaG~n~~~G~~~aee~~ 133 (415)
+++.|.| -|+.|..++.+|.+.|. +.+.++.+...+..... ..++..= -.|... .+..++..
T Consensus 3 ~~vlItGas~gIG~~la~~l~~~G~---~v~~~~r~~~~~~~~~~~~~~~~~~~~~---------~~Dl~~-~~~i~~~~ 69 (257)
T PRK07024 3 LKVFITGASSGIGQALAREYARQGA---TLGLVARRTDALQAFAARLPKAARVSVY---------AADVRD-ADALAAAA 69 (257)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHhcccCCeeEEE---------EcCCCC-HHHHHHHH
Confidence 4688887 57889999999998874 46677776665543211 1011110 011111 23344555
Q ss_pred HHHHHHhcCCCEEEEeccCCC
Q 014946 134 EVIANALKGSDLVFITAGMGG 154 (415)
Q Consensus 134 e~I~~~le~~D~~~I~agLGG 154 (415)
+++.+.....|.++-.+|...
T Consensus 70 ~~~~~~~g~id~lv~~ag~~~ 90 (257)
T PRK07024 70 ADFIAAHGLPDVVIANAGISV 90 (257)
T ss_pred HHHHHhCCCCCEEEECCCcCC
Confidence 566666666898888877644
No 300
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=50.91 E-value=23 Score=34.46 Aligned_cols=38 Identities=21% Similarity=0.234 Sum_probs=28.7
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHhc
Q 014946 59 AKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQ 99 (415)
Q Consensus 59 ~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~~ 99 (415)
|||.|||.|..|+-++..|.+.|. .| ..++.+.+.++.
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~-~V--~~~~r~~~~~~~ 38 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGH-DV--TLVARRGAHLDA 38 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC-eE--EEEECChHHHHH
Confidence 689999999999999999998873 24 455555555544
No 301
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=50.69 E-value=28 Score=28.74 Aligned_cols=93 Identities=18% Similarity=0.279 Sum_probs=56.6
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCceEEE-EEECCHHHHhcCCCCCCeeccccccccCCCCCCchhhHHHHHHHHHHHH
Q 014946 59 AKIKVVGVGGGGNNAVNRMIGSGLQGVDFY-AINTDSQALLQSAAENPLQIGDLLTRGLGTGGNPLLGEQAAEESKEVIA 137 (415)
Q Consensus 59 ~~i~vIGvGgaG~niv~~l~~~~~~~v~~i-ainTD~~~L~~~~~~~ki~ig~~~t~G~GaG~n~~~G~~~aee~~e~I~ 137 (415)
+||.+||.|..|..-...+.+.. ++.+.+ .+|.|............+. ....+.
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~-~~~~v~~v~d~~~~~~~~~~~~~~~~------------------------~~~~~~ 55 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSS-PDFEVVAVCDPDPERAEAFAEKYGIP------------------------VYTDLE 55 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTT-TTEEEEEEECSSHHHHHHHHHHTTSE------------------------EESSHH
T ss_pred CEEEEECCcHHHHHHHHHHHhcC-CCcEEEEEEeCCHHHHHHHHHHhccc------------------------chhHHH
Confidence 58999999999999998888874 345655 4577877655421111100 011133
Q ss_pred HHhc--CCCEEEEeccCCCCccCChHHHHHHHHHHhCCceEEEEecCCC
Q 014946 138 NALK--GSDLVFITAGMGGGTGSGAAPVVAQIAKEAGYLTVGVVTYPFS 184 (415)
Q Consensus 138 ~~le--~~D~~~I~agLGGGTGSG~apvia~~ake~g~~tvavvtlP~~ 184 (415)
++++ +.|+++|+.. +..=.-+++.+-+.|+.++ +=.|..
T Consensus 56 ~ll~~~~~D~V~I~tp------~~~h~~~~~~~l~~g~~v~--~EKP~~ 96 (120)
T PF01408_consen 56 ELLADEDVDAVIIATP------PSSHAEIAKKALEAGKHVL--VEKPLA 96 (120)
T ss_dssp HHHHHTTESEEEEESS------GGGHHHHHHHHHHTTSEEE--EESSSS
T ss_pred HHHHhhcCCEEEEecC------CcchHHHHHHHHHcCCEEE--EEcCCc
Confidence 4444 6899999744 3333445555666788544 567774
No 302
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=50.67 E-value=75 Score=29.39 Aligned_cols=83 Identities=18% Similarity=0.226 Sum_probs=47.9
Q ss_pred CCCeEEEEee-CcchHHHHHHHHHcCCCceEEEEEECCHHHHhcCCC----CCC--eeccccccccCCCCCCchhhHHHH
Q 014946 57 ETAKIKVVGV-GGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSAA----ENP--LQIGDLLTRGLGTGGNPLLGEQAA 129 (415)
Q Consensus 57 ~~~~i~vIGv-GgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~~~----~~k--i~ig~~~t~G~GaG~n~~~G~~~a 129 (415)
...+++|+|. |+-|..++.+|.+.|. +.+++..+...+..... ..+ +..+. + .++ +..
T Consensus 4 ~~~~vlItGasg~iG~~l~~~l~~~G~---~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D-~-------~~~----~~~ 68 (251)
T PRK07231 4 EGKVAIVTGASSGIGEGIARRFAAEGA---RVVVTDRNEEAAERVAAEILAGGRAIAVAAD-V-------SDE----ADV 68 (251)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHhcCCeEEEEECC-C-------CCH----HHH
Confidence 4568999996 7899999999998874 46666665544432111 111 11111 0 112 223
Q ss_pred HHHHHHHHHHhcCCCEEEEeccCCC
Q 014946 130 EESKEVIANALKGSDLVFITAGMGG 154 (415)
Q Consensus 130 ee~~e~I~~~le~~D~~~I~agLGG 154 (415)
+...+++.+.....|.++-++|..+
T Consensus 69 ~~~~~~~~~~~~~~d~vi~~ag~~~ 93 (251)
T PRK07231 69 EAAVAAALERFGSVDILVNNAGTTH 93 (251)
T ss_pred HHHHHHHHHHhCCCCEEEECCCCCC
Confidence 3334445555667899888876543
No 303
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=50.51 E-value=1.8e+02 Score=28.17 Aligned_cols=52 Identities=29% Similarity=0.387 Sum_probs=33.7
Q ss_pred hcCCCEEEEeccCCCCccCChHHH---HHHHHHHhCCceEEEEecCCCCchhhhHHHHHHHHHHHHhhCCEEEEEe
Q 014946 140 LKGSDLVFITAGMGGGTGSGAAPV---VAQIAKEAGYLTVGVVTYPFSFEGRKRSSQALEAIERLQKNVDTLIVIP 212 (415)
Q Consensus 140 le~~D~~~I~agLGGGTGSG~apv---ia~~ake~g~~tvavvtlP~~~Eg~~r~~nA~~~l~~L~e~~D~viv~d 212 (415)
+..-|.++++ +.+ |-+|. .++.+|+.|..+++|.-.|.. .|.+.+|.+|.+.
T Consensus 116 l~~~DvvI~I-S~S-----G~T~~vi~al~~Ak~~Ga~~I~It~~~~s---------------~L~~~aD~~I~~~ 170 (257)
T cd05007 116 LTERDVVIGI-AAS-----GRTPYVLGALRYARARGALTIGIACNPGS---------------PLLQLADIAIALI 170 (257)
T ss_pred CCCCCEEEEE-eCC-----CCCHHHHHHHHHHHHCCCeEEEEECCCCC---------------hhHHhCCEEEEcC
Confidence 3455776544 334 44455 456778889999998754432 2556789988876
No 304
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=50.47 E-value=1.5e+02 Score=28.10 Aligned_cols=96 Identities=26% Similarity=0.379 Sum_probs=63.8
Q ss_pred CCeEEEEeeCcchH---HHHHHHHHcCCCceEEEEEEC-CHHHHhcCCCCCCeeccccccccCCCCCCchhhHHHHHHHH
Q 014946 58 TAKIKVVGVGGGGN---NAVNRMIGSGLQGVDFYAINT-DSQALLQSAAENPLQIGDLLTRGLGTGGNPLLGEQAAEESK 133 (415)
Q Consensus 58 ~~~i~vIGvGgaG~---niv~~l~~~~~~~v~~iainT-D~~~L~~~~~~~ki~ig~~~t~G~GaG~n~~~G~~~aee~~ 133 (415)
.-||.|.|+|--|. +++-+|...|.+ .++++- |..+-+
T Consensus 39 ~gkv~V~G~GkSG~Igkk~Aa~L~s~G~~---a~fv~p~ea~hgd----------------------------------- 80 (202)
T COG0794 39 KGKVFVTGVGKSGLIGKKFAARLASTGTP---AFFVGPAEALHGD----------------------------------- 80 (202)
T ss_pred CCcEEEEcCChhHHHHHHHHHHHHccCCc---eEEecCchhccCC-----------------------------------
Confidence 46799999999876 677777777754 455542 221100
Q ss_pred HHHHHHhcCCCEEEEeccCCCCccCChHHH---HHHHHHHhCCceEEEEecCCCCchhhhHHHHHHHHHHHHhhCCEEEE
Q 014946 134 EVIANALKGSDLVFITAGMGGGTGSGAAPV---VAQIAKEAGYLTVGVVTYPFSFEGRKRSSQALEAIERLQKNVDTLIV 210 (415)
Q Consensus 134 e~I~~~le~~D~~~I~agLGGGTGSG~apv---ia~~ake~g~~tvavvtlP~~~Eg~~r~~nA~~~l~~L~e~~D~viv 210 (415)
.-+++.-|.|+...+ ||-+.. +++.+|+.+..+++|...|.+ .|-+.+|.+++
T Consensus 81 ---lg~i~~~DvviaiS~------SGeT~el~~~~~~aK~~g~~liaiT~~~~S---------------sLak~aDvvl~ 136 (202)
T COG0794 81 ---LGMITPGDVVIAISG------SGETKELLNLAPKAKRLGAKLIAITSNPDS---------------SLAKAADVVLV 136 (202)
T ss_pred ---ccCCCCCCEEEEEeC------CCcHHHHHHHHHHHHHcCCcEEEEeCCCCC---------------hHHHhcCeEEE
Confidence 112233466666543 443333 567899999999999877764 36689999999
Q ss_pred EeCch
Q 014946 211 IPNDR 215 (415)
Q Consensus 211 ~dNd~ 215 (415)
++-..
T Consensus 137 ip~~~ 141 (202)
T COG0794 137 IPVKT 141 (202)
T ss_pred ccCcc
Confidence 98775
No 305
>PRK05993 short chain dehydrogenase; Provisional
Probab=50.40 E-value=79 Score=30.27 Aligned_cols=38 Identities=16% Similarity=0.297 Sum_probs=29.2
Q ss_pred CeEEEEee-CcchHHHHHHHHHcCCCceEEEEEECCHHHHhc
Q 014946 59 AKIKVVGV-GGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQ 99 (415)
Q Consensus 59 ~~i~vIGv-GgaG~niv~~l~~~~~~~v~~iainTD~~~L~~ 99 (415)
.++.|.|. |+.|..++.+|.+.|. +.++++-+...++.
T Consensus 5 k~vlItGasggiG~~la~~l~~~G~---~Vi~~~r~~~~~~~ 43 (277)
T PRK05993 5 RSILITGCSSGIGAYCARALQSDGW---RVFATCRKEEDVAA 43 (277)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEECCHHHHHH
Confidence 46889998 8899999999988764 56777776666654
No 306
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=50.33 E-value=1.5e+02 Score=29.86 Aligned_cols=113 Identities=27% Similarity=0.325 Sum_probs=60.8
Q ss_pred CeEEEEeeCcchHHH-HHHHHHcCCCceEEEEEECCHHHHhcCCCCCCeeccccccccCCCCCCchhhH-H-------H-
Q 014946 59 AKIKVVGVGGGGNNA-VNRMIGSGLQGVDFYAINTDSQALLQSAAENPLQIGDLLTRGLGTGGNPLLGE-Q-------A- 128 (415)
Q Consensus 59 ~~i~vIGvGgaG~ni-v~~l~~~~~~~v~~iainTD~~~L~~~~~~~ki~ig~~~t~G~GaG~n~~~G~-~-------~- 128 (415)
.-..|.|+|.+|.-. +-+.++...++++.++++.....+-.--. |.....|.|++--|..-. + +
T Consensus 170 ~d~fVagvGTGGTitGvar~Lk~~~p~i~iv~vdP~~S~~~~~G~------g~~~i~GIG~~~ip~~~~~~~iD~v~~V~ 243 (300)
T COG0031 170 VDAFVAGVGTGGTITGVARYLKERNPNVRIVAVDPEGSVLLSGGE------GPHKIEGIGAGFVPENLDLDLIDEVIRVS 243 (300)
T ss_pred CCEEEEeCCcchhHHHHHHHHHhhCCCcEEEEECCCCCcccCCCC------CCcccCCCCCCcCCcccccccCceEEEEC
Confidence 678999999999754 33444444456999999986544422110 344556777776663211 0 1
Q ss_pred HHHHHHHHHHHhcCCCEEEEeccCCCCccCChHHHH-HHHHHHhCCceEEEEecCCC
Q 014946 129 AEESKEVIANALKGSDLVFITAGMGGGTGSGAAPVV-AQIAKEAGYLTVGVVTYPFS 184 (415)
Q Consensus 129 aee~~e~I~~~le~~D~~~I~agLGGGTGSG~apvi-a~~ake~g~~tvavvtlP~~ 184 (415)
.++..+..|++.+ -+++|+ |--||++-.. .+++++++.-..-|+++|..
T Consensus 244 d~~A~~~~r~La~-~eGilv------G~SsGA~~~aa~~~a~~~~~g~~IVti~pD~ 293 (300)
T COG0031 244 DEEAIATARRLAR-EEGLLV------GISSGAALAAALKLAKELPAGKTIVTILPDS 293 (300)
T ss_pred HHHHHHHHHHHHH-HhCeee------cccHHHHHHHHHHHHHhcCCCCeEEEEECCC
Confidence 1233344444443 234443 3335655443 37788876432223344553
No 307
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=49.97 E-value=70 Score=31.97 Aligned_cols=32 Identities=13% Similarity=0.218 Sum_probs=26.2
Q ss_pred CCeEEEEee-CcchHHHHHHHHHcCCCceEEEEEEC
Q 014946 58 TAKIKVVGV-GGGGNNAVNRMIGSGLQGVDFYAINT 92 (415)
Q Consensus 58 ~~~i~vIGv-GgaG~niv~~l~~~~~~~v~~iainT 92 (415)
.+||+|.|- |-.|.+++.+|++.|. +.++++-
T Consensus 15 ~~~vlVtGatGfiG~~lv~~L~~~g~---~V~~~d~ 47 (348)
T PRK15181 15 PKRWLITGVAGFIGSGLLEELLFLNQ---TVIGLDN 47 (348)
T ss_pred CCEEEEECCccHHHHHHHHHHHHCCC---EEEEEeC
Confidence 478999996 9999999999999874 4566654
No 308
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=49.90 E-value=71 Score=29.96 Aligned_cols=82 Identities=13% Similarity=0.163 Sum_probs=49.4
Q ss_pred CCeEEEEee-CcchHHHHHHHHHcCCCceEEEEEECCHHHHhcCCCC--CCee-ccccccccCCCCCCchhhHHHHHHHH
Q 014946 58 TAKIKVVGV-GGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSAAE--NPLQ-IGDLLTRGLGTGGNPLLGEQAAEESK 133 (415)
Q Consensus 58 ~~~i~vIGv-GgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~~~~--~ki~-ig~~~t~G~GaG~n~~~G~~~aee~~ 133 (415)
..++.|.|. |+-|..++.+|.++|. +.+.++.|...+...... .++. +.-.+ .|+ +..++..
T Consensus 6 ~~~vlItGas~~iG~~ia~~l~~~G~---~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~-------~~~----~~~~~~~ 71 (257)
T PRK07067 6 GKVALLTGAASGIGEAVAERYLAEGA---RVVIADIKPARARLAALEIGPAAIAVSLDV-------TRQ----DSIDRIV 71 (257)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCC---EEEEEcCCHHHHHHHHHHhCCceEEEEccC-------CCH----HHHHHHH
Confidence 457899986 7779999999999874 466777777665543111 1111 11011 112 2344455
Q ss_pred HHHHHHhcCCCEEEEeccCC
Q 014946 134 EVIANALKGSDLVFITAGMG 153 (415)
Q Consensus 134 e~I~~~le~~D~~~I~agLG 153 (415)
+++.+.+...|.++-++|..
T Consensus 72 ~~~~~~~~~id~li~~ag~~ 91 (257)
T PRK07067 72 AAAVERFGGIDILFNNAALF 91 (257)
T ss_pred HHHHHHcCCCCEEEECCCcC
Confidence 56666667889887776643
No 309
>PRK12828 short chain dehydrogenase; Provisional
Probab=49.87 E-value=1.2e+02 Score=27.59 Aligned_cols=83 Identities=18% Similarity=0.159 Sum_probs=47.3
Q ss_pred CCCeEEEEee-CcchHHHHHHHHHcCCCceEEEEEECCHHHHh----cCCCCCCeeccccccccCCCCCCchhhHHHHHH
Q 014946 57 ETAKIKVVGV-GGGGNNAVNRMIGSGLQGVDFYAINTDSQALL----QSAAENPLQIGDLLTRGLGTGGNPLLGEQAAEE 131 (415)
Q Consensus 57 ~~~~i~vIGv-GgaG~niv~~l~~~~~~~v~~iainTD~~~L~----~~~~~~ki~ig~~~t~G~GaG~n~~~G~~~aee 131 (415)
...+++|.|- |+-|..++.+|.+.|. +.++++-|.+.+. .........+. .|... .+..++
T Consensus 6 ~~k~vlItGatg~iG~~la~~l~~~G~---~v~~~~r~~~~~~~~~~~~~~~~~~~~~----------~D~~~-~~~~~~ 71 (239)
T PRK12828 6 QGKVVAITGGFGGLGRATAAWLAARGA---RVALIGRGAAPLSQTLPGVPADALRIGG----------IDLVD-PQAARR 71 (239)
T ss_pred CCCEEEEECCCCcHhHHHHHHHHHCCC---eEEEEeCChHhHHHHHHHHhhcCceEEE----------eecCC-HHHHHH
Confidence 3567999986 8889999999998874 4667766554322 11111100110 11111 122344
Q ss_pred HHHHHHHHhcCCCEEEEeccCC
Q 014946 132 SKEVIANALKGSDLVFITAGMG 153 (415)
Q Consensus 132 ~~e~I~~~le~~D~~~I~agLG 153 (415)
..+++.+....+|.++-.+|..
T Consensus 72 ~~~~~~~~~~~~d~vi~~ag~~ 93 (239)
T PRK12828 72 AVDEVNRQFGRLDALVNIAGAF 93 (239)
T ss_pred HHHHHHHHhCCcCEEEECCccc
Confidence 5556666666889888776643
No 310
>PRK07806 short chain dehydrogenase; Provisional
Probab=49.68 E-value=1.2e+02 Score=28.11 Aligned_cols=27 Identities=22% Similarity=0.382 Sum_probs=22.7
Q ss_pred CCCCeEEEEee-CcchHHHHHHHHHcCC
Q 014946 56 METAKIKVVGV-GGGGNNAVNRMIGSGL 82 (415)
Q Consensus 56 ~~~~~i~vIGv-GgaG~niv~~l~~~~~ 82 (415)
+...++.|.|. |+.|..++.+|.+.|.
T Consensus 4 ~~~k~vlItGasggiG~~l~~~l~~~G~ 31 (248)
T PRK07806 4 LPGKTALVTGSSRGIGADTAKILAGAGA 31 (248)
T ss_pred CCCcEEEEECCCCcHHHHHHHHHHHCCC
Confidence 34568999997 8999999999998874
No 311
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=49.46 E-value=25 Score=30.99 Aligned_cols=39 Identities=38% Similarity=0.659 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhcCCCEEEEeccCCCCccCChHHHHHHHHHHhC
Q 014946 130 EESKEVIANALKGSDLVFITAGMGGGTGSGAAPVVAQIAKEAG 172 (415)
Q Consensus 130 ee~~e~I~~~le~~D~~~I~agLGGGTGSG~apvia~~ake~g 172 (415)
++..+.+++++++||+++++ ||||-|-.-+..+.+++.+
T Consensus 54 ~~i~~~l~~~~~~~DliItt----GG~g~g~~D~t~~ai~~~g 92 (144)
T TIGR00177 54 EEIREILRKAVDEADVVLTT----GGTGVGPRDVTPEALEELG 92 (144)
T ss_pred HHHHHHHHHHHhCCCEEEEC----CCCCCCCCccHHHHHHHhC
Confidence 34455566677789999887 5566665555556666655
No 312
>PRK08264 short chain dehydrogenase; Validated
Probab=49.41 E-value=1.4e+02 Score=27.33 Aligned_cols=40 Identities=23% Similarity=0.412 Sum_probs=30.2
Q ss_pred CCCeEEEEee-CcchHHHHHHHHHcCCCceEEEEEECCHHHHh
Q 014946 57 ETAKIKVVGV-GGGGNNAVNRMIGSGLQGVDFYAINTDSQALL 98 (415)
Q Consensus 57 ~~~~i~vIGv-GgaG~niv~~l~~~~~~~v~~iainTD~~~L~ 98 (415)
...++.|+|- |+.|..++.+|.+.|.. ..+++..+...+.
T Consensus 5 ~~~~vlItGgsg~iG~~la~~l~~~G~~--~V~~~~r~~~~~~ 45 (238)
T PRK08264 5 KGKVVLVTGANRGIGRAFVEQLLARGAA--KVYAAARDPESVT 45 (238)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCcc--cEEEEecChhhhh
Confidence 4567999984 88999999999988752 3567777766554
No 313
>PLN02735 carbamoyl-phosphate synthase
Probab=49.02 E-value=39 Score=39.88 Aligned_cols=36 Identities=25% Similarity=0.428 Sum_probs=29.4
Q ss_pred CCeEEEEeeCcc-----------hHHHHHHHHHcCCCceEEEEEECCHHH
Q 014946 58 TAKIKVVGVGGG-----------GNNAVNRMIGSGLQGVDFYAINTDSQA 96 (415)
Q Consensus 58 ~~~i~vIGvGga-----------G~niv~~l~~~~~~~v~~iainTD~~~ 96 (415)
-.||+|+|-|.. |..++..|.+.|+ +.+++|+++..
T Consensus 23 ~kkVLiiGsG~~~igqa~e~d~SG~q~~kaLke~G~---~Vi~vd~np~t 69 (1102)
T PLN02735 23 LKKIMILGAGPIVIGQACEFDYSGTQACKALKEEGY---EVVLINSNPAT 69 (1102)
T ss_pred CCEEEEECCCccccccceeecchHHHHHHHHHHcCC---EEEEEeCCccc
Confidence 468999999973 8889999988875 58999987743
No 314
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=48.96 E-value=38 Score=34.76 Aligned_cols=80 Identities=23% Similarity=0.359 Sum_probs=51.4
Q ss_pred CCCCCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHhcCCCCCCeeccccccccCCCCCCchhhHHHHHHHHH
Q 014946 55 PMETAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSAAENPLQIGDLLTRGLGTGGNPLLGEQAAEESKE 134 (415)
Q Consensus 55 ~~~~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~~~~~ki~ig~~~t~G~GaG~n~~~G~~~aee~~e 134 (415)
....-.+.|+|+|+-|-+++......|.. ..+|||.+...|+--. .+|...+ -|| ++.. ...+
T Consensus 183 v~~G~tvaV~GlGgVGlaaI~gA~~agA~--~IiAvD~~~~Kl~~A~-----~fGAT~~------vn~---~~~~-~vv~ 245 (366)
T COG1062 183 VEPGDTVAVFGLGGVGLAAIQGAKAAGAG--RIIAVDINPEKLELAK-----KFGATHF------VNP---KEVD-DVVE 245 (366)
T ss_pred CCCCCeEEEEeccHhHHHHHHHHHHcCCc--eEEEEeCCHHHHHHHH-----hcCCcee------ecc---hhhh-hHHH
Confidence 34466799999999999999999888753 6789999887775321 1221100 012 1111 3455
Q ss_pred HHHHHhc-CCCEEEEecc
Q 014946 135 VIANALK-GSDLVFITAG 151 (415)
Q Consensus 135 ~I~~~le-~~D~~~I~ag 151 (415)
.|+++-+ ++|..|-+.|
T Consensus 246 ~i~~~T~gG~d~~~e~~G 263 (366)
T COG1062 246 AIVELTDGGADYAFECVG 263 (366)
T ss_pred HHHHhcCCCCCEEEEccC
Confidence 5666666 7888887754
No 315
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=48.85 E-value=82 Score=29.58 Aligned_cols=88 Identities=16% Similarity=0.106 Sum_probs=50.8
Q ss_pred CCCCCCCeEEEEee-CcchHHHHHHHHHcCCCceEEEEEECCHHHHhcCC----C-CCCeeccccccccCCCCCCchhhH
Q 014946 53 FAPMETAKIKVVGV-GGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSA----A-ENPLQIGDLLTRGLGTGGNPLLGE 126 (415)
Q Consensus 53 ~~~~~~~~i~vIGv-GgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~~----~-~~ki~ig~~~t~G~GaG~n~~~G~ 126 (415)
++...+.+++|.|. |+-|..++.+|.+.|. ..+.++.+...++... . ..++.+ .. .|.. -.
T Consensus 7 ~~~~~~k~ilItGa~g~IG~~la~~l~~~G~---~V~~~~r~~~~~~~~~~~i~~~~~~~~~----~~-----~Dl~-d~ 73 (259)
T PRK08213 7 LFDLSGKTALVTGGSRGLGLQIAEALGEAGA---RVVLSARKAEELEEAAAHLEALGIDALW----IA-----ADVA-DE 73 (259)
T ss_pred hhCcCCCEEEEECCCchHHHHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHHHhcCCeEEE----EE-----ccCC-CH
Confidence 34455678999995 8889999999998774 4566666555443211 0 111111 00 0111 12
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeccCC
Q 014946 127 QAAEESKEVIANALKGSDLVFITAGMG 153 (415)
Q Consensus 127 ~~aee~~e~I~~~le~~D~~~I~agLG 153 (415)
+..+...+++.+.....|.++-++|..
T Consensus 74 ~~i~~~~~~~~~~~~~id~vi~~ag~~ 100 (259)
T PRK08213 74 ADIERLAEETLERFGHVDILVNNAGAT 100 (259)
T ss_pred HHHHHHHHHHHHHhCCCCEEEECCCCC
Confidence 234444556666666789988887653
No 316
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=48.83 E-value=25 Score=34.86 Aligned_cols=37 Identities=16% Similarity=0.214 Sum_probs=30.0
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHh
Q 014946 59 AKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALL 98 (415)
Q Consensus 59 ~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~ 98 (415)
++|.|||.|--|+.++..|.+.|. +.+.+|-+.+.++
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~---~V~v~d~~~~~~~ 39 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGH---EVRLWDADPAAAA 39 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCC---eeEEEeCCHHHHH
Confidence 579999999999999999999875 3566777765544
No 317
>PRK07074 short chain dehydrogenase; Provisional
Probab=48.72 E-value=87 Score=29.30 Aligned_cols=82 Identities=21% Similarity=0.258 Sum_probs=47.5
Q ss_pred CeEEEEee-CcchHHHHHHHHHcCCCceEEEEEECCHHHHhcCCC---CCCee-ccccccccCCCCCCchhhHHHHHHHH
Q 014946 59 AKIKVVGV-GGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSAA---ENPLQ-IGDLLTRGLGTGGNPLLGEQAAEESK 133 (415)
Q Consensus 59 ~~i~vIGv-GgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~~~---~~ki~-ig~~~t~G~GaG~n~~~G~~~aee~~ 133 (415)
.++.|.|. |+-|..++.+|.+.|. +.+.++.+...++.... ..++. +.-.. .|+ +......
T Consensus 3 k~ilItGat~~iG~~la~~L~~~g~---~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~-------~~~----~~~~~~~ 68 (257)
T PRK07074 3 RTALVTGAAGGIGQALARRFLAAGD---RVLALDIDAAALAAFADALGDARFVPVACDL-------TDA----ASLAAAL 68 (257)
T ss_pred CEEEEECCcchHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHhcCCceEEEEecC-------CCH----HHHHHHH
Confidence 36889987 7899999999998764 46677776665543211 11211 10000 112 2233344
Q ss_pred HHHHHHhcCCCEEEEeccCCC
Q 014946 134 EVIANALKGSDLVFITAGMGG 154 (415)
Q Consensus 134 e~I~~~le~~D~~~I~agLGG 154 (415)
+++.+.....|.++.++|..+
T Consensus 69 ~~~~~~~~~~d~vi~~ag~~~ 89 (257)
T PRK07074 69 ANAAAERGPVDVLVANAGAAR 89 (257)
T ss_pred HHHHHHcCCCCEEEECCCCCC
Confidence 455555567899888886543
No 318
>PRK07478 short chain dehydrogenase; Provisional
Probab=48.68 E-value=1e+02 Score=28.86 Aligned_cols=83 Identities=19% Similarity=0.194 Sum_probs=48.8
Q ss_pred CCeEEEEee-CcchHHHHHHHHHcCCCceEEEEEECCHHHHhcCCCC-----CCe-eccccccccCCCCCCchhhHHHHH
Q 014946 58 TAKIKVVGV-GGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSAAE-----NPL-QIGDLLTRGLGTGGNPLLGEQAAE 130 (415)
Q Consensus 58 ~~~i~vIGv-GgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~~~~-----~ki-~ig~~~t~G~GaG~n~~~G~~~ae 130 (415)
..++.|.|. ||.|..++.+|.+.|. +.+.+..+...++....+ .++ .+.-.+ .++ +..+
T Consensus 6 ~k~~lItGas~giG~~ia~~l~~~G~---~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~-------~~~----~~~~ 71 (254)
T PRK07478 6 GKVAIITGASSGIGRAAAKLFAREGA---KVVVGARRQAELDQLVAEIRAEGGEAVALAGDV-------RDE----AYAK 71 (254)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCC-------CCH----HHHH
Confidence 457888886 5679999999998875 456666666555432110 011 110000 112 2344
Q ss_pred HHHHHHHHHhcCCCEEEEeccCCC
Q 014946 131 ESKEVIANALKGSDLVFITAGMGG 154 (415)
Q Consensus 131 e~~e~I~~~le~~D~~~I~agLGG 154 (415)
+..+++.+.....|.++..+|..+
T Consensus 72 ~~~~~~~~~~~~id~li~~ag~~~ 95 (254)
T PRK07478 72 ALVALAVERFGGLDIAFNNAGTLG 95 (254)
T ss_pred HHHHHHHHhcCCCCEEEECCCCCC
Confidence 455666666678899988887643
No 319
>PTZ00489 glutamate 5-kinase; Provisional
Probab=48.59 E-value=1.3e+02 Score=29.55 Aligned_cols=42 Identities=29% Similarity=0.420 Sum_probs=28.5
Q ss_pred hCCceEEEEecCCCCchhhhHHHHHHHHHHHHhhCCEEEEEeCc
Q 014946 171 AGYLTVGVVTYPFSFEGRKRSSQALEAIERLQKNVDTLIVIPND 214 (415)
Q Consensus 171 ~g~~tvavvtlP~~~Eg~~r~~nA~~~l~~L~e~~D~viv~dNd 214 (415)
++..+.-+...-..++.+.+..|+...+++|.+.- +|++-|+
T Consensus 94 ~~~~~aqiLlt~~d~~~~~~~~n~~~~l~~lL~~g--~VPIine 135 (264)
T PTZ00489 94 HGILCAQMLLAAYDLDSRKRTINAHNTIEVLISHK--VIPIINE 135 (264)
T ss_pred CCCeEEEeeeeccccccchhhHHHHHHHHHHHHCC--CEEEECC
Confidence 45566556655566677777889999999998873 3444443
No 320
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=48.43 E-value=1.5e+02 Score=27.68 Aligned_cols=87 Identities=23% Similarity=0.274 Sum_probs=49.6
Q ss_pred CCCeEEEEeeCcchHHHHHHHHHcCCCceEEEE-EECCHHHHhcCCCCCCeeccccccccCCCCCCchhhHHHHHHHHHH
Q 014946 57 ETAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYA-INTDSQALLQSAAENPLQIGDLLTRGLGTGGNPLLGEQAAEESKEV 135 (415)
Q Consensus 57 ~~~~i~vIGvGgaG~niv~~l~~~~~~~v~~ia-inTD~~~L~~~~~~~ki~ig~~~t~G~GaG~n~~~G~~~aee~~e~ 135 (415)
...++.|||.|..|..++..+... -.+++.++ +|.|...... .+ .| .+.. ..+.
T Consensus 83 ~~~rV~IIGaG~iG~~l~~~~~~~-~~g~~ivgv~D~d~~~~~~-----~i-------~g-----~~v~-------~~~~ 137 (213)
T PRK05472 83 RTWNVALVGAGNLGRALLNYNGFE-KRGFKIVAAFDVDPEKIGT-----KI-------GG-----IPVY-------HIDE 137 (213)
T ss_pred CCcEEEEECCCHHHHHHHHhhhcc-cCCcEEEEEEECChhhcCC-----Ee-------CC-----eEEc-------CHHH
Confidence 456899999999999998864322 23455554 5666543211 00 01 1110 1223
Q ss_pred HHHHhc--CCCEEEEeccCCCCccCChHHHHHHHHHHhCCc
Q 014946 136 IANALK--GSDLVFITAGMGGGTGSGAAPVVAQIAKEAGYL 174 (415)
Q Consensus 136 I~~~le--~~D~~~I~agLGGGTGSG~apvia~~ake~g~~ 174 (415)
+.+.++ ++|.++|+.... ...-+.+.+.+.|+.
T Consensus 138 l~~li~~~~iD~ViIa~P~~------~~~~i~~~l~~~Gi~ 172 (213)
T PRK05472 138 LEEVVKENDIEIGILTVPAE------AAQEVADRLVEAGIK 172 (213)
T ss_pred HHHHHHHCCCCEEEEeCCch------hHHHHHHHHHHcCCC
Confidence 344443 589999986643 334566777777864
No 321
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=48.34 E-value=1.4e+02 Score=27.19 Aligned_cols=103 Identities=23% Similarity=0.303 Sum_probs=62.2
Q ss_pred HHHHHHHcCCCceEEEEEECC-------HHHHhcCCCCCCeecccccccc-CCCCCCchhhHHHHHHHHHHHHHHhc-CC
Q 014946 73 AVNRMIGSGLQGVDFYAINTD-------SQALLQSAAENPLQIGDLLTRG-LGTGGNPLLGEQAAEESKEVIANALK-GS 143 (415)
Q Consensus 73 iv~~l~~~~~~~v~~iainTD-------~~~L~~~~~~~ki~ig~~~t~G-~GaG~n~~~G~~~aee~~e~I~~~le-~~ 143 (415)
.+.+|...|+.=.-++-.|+. ...|..++....+.|-+.+..| .|+--||. +..+.-..|+.+++ ++
T Consensus 19 ~a~~L~~~G~rv~G~vQ~~~~~~~~~~~~m~l~dl~~G~~~~IsQ~LG~gs~gCrLD~~----~La~A~~~l~~al~~~~ 94 (159)
T PF10649_consen 19 FAARLRARGVRVAGLVQRNTADGDGGRCDMDLRDLPSGRRIRISQDLGPGSRGCRLDPG----ALAEASAALRRALAEGA 94 (159)
T ss_pred HHHHHHhCCCeEEEEeccccCCCCCCccceEEEECCCCCEEEEeeccCCCCcccccCHH----HHHHHHHHHHHHHhcCC
Confidence 345555667654455555531 1124445556677787766544 45555664 33444566777776 58
Q ss_pred CEEEEe-ccCCCCccCChHHHHHHHHHHhCCceEEEEe
Q 014946 144 DLVFIT-AGMGGGTGSGAAPVVAQIAKEAGYLTVGVVT 180 (415)
Q Consensus 144 D~~~I~-agLGGGTGSG~apvia~~ake~g~~tvavvt 180 (415)
|+++|- .|=-...|.|+.+.|++.+ ..|++++..|.
T Consensus 95 DLlivNkFGk~Ea~G~Glr~~i~~A~-~~giPVLt~V~ 131 (159)
T PF10649_consen 95 DLLIVNKFGKQEAEGRGLRDEIAAAL-AAGIPVLTAVP 131 (159)
T ss_pred CEEEEcccHHhhhcCCCHHHHHHHHH-HCCCCEEEEEC
Confidence 977652 2444567889999998844 56888876553
No 322
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=48.30 E-value=70 Score=29.99 Aligned_cols=82 Identities=17% Similarity=0.159 Sum_probs=48.3
Q ss_pred CeEEEEeeC-cchHHHHHHHHHcCCCceEEEEEECCHHHHhcCCCC-------CCee-ccccccccCCCCCCchhhHHHH
Q 014946 59 AKIKVVGVG-GGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSAAE-------NPLQ-IGDLLTRGLGTGGNPLLGEQAA 129 (415)
Q Consensus 59 ~~i~vIGvG-gaG~niv~~l~~~~~~~v~~iainTD~~~L~~~~~~-------~ki~-ig~~~t~G~GaG~n~~~G~~~a 129 (415)
.+++|.|.+ +.|..++.+|.+.| .+.+.++.+...+...... .++. +.-.+ .|+ +..
T Consensus 3 k~ilItG~~~~IG~~la~~l~~~g---~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~-------~~~----~~i 68 (259)
T PRK12384 3 QVAVVIGGGQTLGAFLCHGLAEEG---YRVAVADINSEKAANVAQEINAEYGEGMAYGFGADA-------TSE----QSV 68 (259)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccC-------CCH----HHH
Confidence 358888874 56999999999876 3567777766555432110 1111 10001 122 233
Q ss_pred HHHHHHHHHHhcCCCEEEEeccCCC
Q 014946 130 EESKEVIANALKGSDLVFITAGMGG 154 (415)
Q Consensus 130 ee~~e~I~~~le~~D~~~I~agLGG 154 (415)
+...+++.+.+...|.++-++|...
T Consensus 69 ~~~~~~~~~~~~~id~vv~~ag~~~ 93 (259)
T PRK12384 69 LALSRGVDEIFGRVDLLVYNAGIAK 93 (259)
T ss_pred HHHHHHHHHHcCCCCEEEECCCcCC
Confidence 4445666666778899888887654
No 323
>PRK11544 hycI hydrogenase 3 maturation protease; Provisional
Probab=48.04 E-value=31 Score=30.92 Aligned_cols=39 Identities=15% Similarity=0.124 Sum_probs=31.0
Q ss_pred CeEEEEeeC-------cchHHHHHHHHHcCCCceEEEEEECCHHHH
Q 014946 59 AKIKVVGVG-------GGGNNAVNRMIGSGLQGVDFYAINTDSQAL 97 (415)
Q Consensus 59 ~~i~vIGvG-------gaG~niv~~l~~~~~~~v~~iainTD~~~L 97 (415)
||++|+|+| |.|-.++++|.+...+++.++-..|....+
T Consensus 1 ~~~lVlGiGN~L~gDDGvG~~v~~~L~~~~~~~v~vid~gt~~~~~ 46 (156)
T PRK11544 1 MTDVVLTVGNSMMGDDGAGPLLAEKLAAAPKGGWVVIDGGSAPEND 46 (156)
T ss_pred CcEEEEEeCccccccCcHHHHHHHHHhccCCCCeEEEECCCCHHHH
Confidence 578999999 789999999987766678777777765543
No 324
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=47.95 E-value=52 Score=31.55 Aligned_cols=32 Identities=22% Similarity=0.301 Sum_probs=24.3
Q ss_pred eEEEEee-CcchHHHHHHHHHcCCCceEEEEEEC
Q 014946 60 KIKVVGV-GGGGNNAVNRMIGSGLQGVDFYAINT 92 (415)
Q Consensus 60 ~i~vIGv-GgaG~niv~~l~~~~~~~v~~iainT 92 (415)
+|+|.|. |+.|..++.+|.+.+. ..+.++++.
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~-~~~v~~~~~ 33 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHP-DAEVIVLDK 33 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCC-CCEEEEecC
Confidence 5889997 8999999999988762 245566653
No 325
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=47.88 E-value=33 Score=34.95 Aligned_cols=35 Identities=29% Similarity=0.212 Sum_probs=28.0
Q ss_pred CCeEEEEeeCcch-----HHHHHHHHHcCCCceEEEEEECC
Q 014946 58 TAKIKVVGVGGGG-----NNAVNRMIGSGLQGVDFYAINTD 93 (415)
Q Consensus 58 ~~~i~vIGvGgaG-----~niv~~l~~~~~~~v~~iainTD 93 (415)
..-|+++||-|.| ++++.++.+.|.+ |-..|.||=
T Consensus 139 p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~-VllaA~DTF 178 (340)
T COG0552 139 PFVILFVGVNGVGKTTTIAKLAKYLKQQGKS-VLLAAGDTF 178 (340)
T ss_pred cEEEEEEecCCCchHhHHHHHHHHHHHCCCe-EEEEecchH
Confidence 5569999999999 4778888888854 778888883
No 326
>PRK05693 short chain dehydrogenase; Provisional
Probab=47.83 E-value=92 Score=29.62 Aligned_cols=80 Identities=18% Similarity=0.216 Sum_probs=45.1
Q ss_pred eEEEEee-CcchHHHHHHHHHcCCCceEEEEEECCHHHHhcCCCCCCeeccccccccCCCCCCchhhHHHHHHHHHHHHH
Q 014946 60 KIKVVGV-GGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSAAENPLQIGDLLTRGLGTGGNPLLGEQAAEESKEVIAN 138 (415)
Q Consensus 60 ~i~vIGv-GgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~~~~~ki~ig~~~t~G~GaG~n~~~G~~~aee~~e~I~~ 138 (415)
+++|.|. |+.|..++..|.+.|. +.++++-+...++......-..+- .|... .+..++..+++.+
T Consensus 3 ~vlItGasggiG~~la~~l~~~G~---~V~~~~r~~~~~~~~~~~~~~~~~----------~Dl~~-~~~~~~~~~~~~~ 68 (274)
T PRK05693 3 VVLITGCSSGIGRALADAFKAAGY---EVWATARKAEDVEALAAAGFTAVQ----------LDVND-GAALARLAEELEA 68 (274)
T ss_pred EEEEecCCChHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHCCCeEEE----------eeCCC-HHHHHHHHHHHHH
Confidence 5778875 7788899999988764 455665555555432211100110 01110 1233444455555
Q ss_pred HhcCCCEEEEeccCC
Q 014946 139 ALKGSDLVFITAGMG 153 (415)
Q Consensus 139 ~le~~D~~~I~agLG 153 (415)
....+|.++-.+|.+
T Consensus 69 ~~~~id~vi~~ag~~ 83 (274)
T PRK05693 69 EHGGLDVLINNAGYG 83 (274)
T ss_pred hcCCCCEEEECCCCC
Confidence 566789998888764
No 327
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=47.76 E-value=59 Score=32.00 Aligned_cols=49 Identities=16% Similarity=0.016 Sum_probs=33.9
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHhcCCCCCCeecc
Q 014946 59 AKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSAAENPLQIG 109 (415)
Q Consensus 59 ~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~~~~~ki~ig 109 (415)
+||+|.|+|..- .++..+.+.+. +.+.+++|++..+.....++..+.++
T Consensus 2 ~~vLv~g~~~~~-~~~~~l~~~~~-g~~vi~~d~~~~~~~~~~~d~~~~~p 50 (326)
T PRK12767 2 MNILVTSAGRRV-QLVKALKKSLL-KGRVIGADISELAPALYFADKFYVVP 50 (326)
T ss_pred ceEEEecCCccH-HHHHHHHHhcc-CCEEEEECCCCcchhhHhccCcEecC
Confidence 689999998766 88888888763 57789999875544332344444443
No 328
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=47.72 E-value=7.2 Score=36.86 Aligned_cols=64 Identities=20% Similarity=0.237 Sum_probs=39.8
Q ss_pred EEEeccCCCCccCChHHHHHHHHHHhCC---ceEEEEecCCCCchhhhHHHHHHHHHHHHhhCCEEEEEeCchhhhhc
Q 014946 146 VFITAGMGGGTGSGAAPVVAQIAKEAGY---LTVGVVTYPFSFEGRKRSSQALEAIERLQKNVDTLIVIPNDRLLDIT 220 (415)
Q Consensus 146 ~~I~agLGGGTGSG~apvia~~ake~g~---~tvavvtlP~~~Eg~~r~~nA~~~l~~L~e~~D~viv~dNd~L~~~~ 220 (415)
.+|+|||||.| +++++.+... ..--++..|.......|.+-...+ -...|--++.||+++|++.
T Consensus 69 ~ivIAGMGG~l-------I~~ILe~~~~~~~~~~~lILqP~~~~~~LR~~L~~~g----f~I~~E~lv~e~~~~YeIi 135 (205)
T PF04816_consen 69 TIVIAGMGGEL-------IIEILEAGPEKLSSAKRLILQPNTHAYELRRWLYENG----FEIIDEDLVEENGRFYEII 135 (205)
T ss_dssp EEEEEEE-HHH-------HHHHHHHTGGGGTT--EEEEEESS-HHHHHHHHHHTT----EEEEEEEEEEETTEEEEEE
T ss_pred EEEEecCCHHH-------HHHHHHhhHHHhccCCeEEEeCCCChHHHHHHHHHCC----CEEEEeEEEeECCEEEEEE
Confidence 45679999875 7777766431 122355678877666665422221 1346889999999999987
No 329
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=47.71 E-value=49 Score=33.03 Aligned_cols=81 Identities=23% Similarity=0.213 Sum_probs=47.1
Q ss_pred CCCCCeEEEEee-CcchHHHHHHHHHcCCCceEEEEEECCHHHHhc----CCCCCCeeccccccccCCCCCCchhhHHHH
Q 014946 55 PMETAKIKVVGV-GGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQ----SAAENPLQIGDLLTRGLGTGGNPLLGEQAA 129 (415)
Q Consensus 55 ~~~~~~i~vIGv-GgaG~niv~~l~~~~~~~v~~iainTD~~~L~~----~~~~~ki~ig~~~t~G~GaG~n~~~G~~~a 129 (415)
..+.|+|+|.|. |..|..++.+|.+.|. +.++++-+...... .....++.+ ..+ |.
T Consensus 7 ~~~~~~vLVtG~~GfIG~~l~~~L~~~G~---~V~~~~r~~~~~~~~~~~~~~~~~~~~----~~~-----Dl------- 67 (353)
T PLN02896 7 ESATGTYCVTGATGYIGSWLVKLLLQRGY---TVHATLRDPAKSLHLLSKWKEGDRLRL----FRA-----DL------- 67 (353)
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEeCChHHHHHHHHhhccCCeEEE----EEC-----CC-------
Confidence 345789999995 8899999999999874 34454443332111 111111111 000 11
Q ss_pred HHHHHHHHHHhcCCCEEEEeccCCCC
Q 014946 130 EESKEVIANALKGSDLVFITAGMGGG 155 (415)
Q Consensus 130 ee~~e~I~~~le~~D~~~I~agLGGG 155 (415)
.+.+.+.++++++|.|+-+|+..+.
T Consensus 68 -~~~~~~~~~~~~~d~Vih~A~~~~~ 92 (353)
T PLN02896 68 -QEEGSFDEAVKGCDGVFHVAASMEF 92 (353)
T ss_pred -CCHHHHHHHHcCCCEEEECCccccC
Confidence 1234456667789999888887543
No 330
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=47.69 E-value=39 Score=36.97 Aligned_cols=40 Identities=13% Similarity=0.165 Sum_probs=32.4
Q ss_pred CCCCCCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHH
Q 014946 54 APMETAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQA 96 (415)
Q Consensus 54 ~~~~~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~ 96 (415)
+.++.++|.|||-|+-|.-++....+.| .+++++|.|..+
T Consensus 18 ~~~~~k~IgIIGgGqlg~mla~aA~~lG---~~Vi~ld~~~~a 57 (577)
T PLN02948 18 HGVSETVVGVLGGGQLGRMLCQAASQMG---IKVKVLDPLEDC 57 (577)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHCC---CEEEEEeCCCCC
Confidence 4578889999999999999988888876 457788877653
No 331
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=47.66 E-value=50 Score=31.70 Aligned_cols=80 Identities=23% Similarity=0.265 Sum_probs=49.7
Q ss_pred CeEEEEee-CcchHHHHHHHHHcCCCceEEEEEECCHHHHhcCCCCCCeeccccccccCCCCCCchhhHHHHHHHHHHHH
Q 014946 59 AKIKVVGV-GGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSAAENPLQIGDLLTRGLGTGGNPLLGEQAAEESKEVIA 137 (415)
Q Consensus 59 ~~i~vIGv-GgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~~~~~ki~ig~~~t~G~GaG~n~~~G~~~aee~~e~I~ 137 (415)
|+|+|.|. |-.|++++++|.+.| .+.++++.................+. ..+.+.+.
T Consensus 1 ~~ILVtG~tGfiG~~l~~~L~~~g---~~V~~~~r~~~~~~~~~~~~~~~~~d-------------------~~~~~~~~ 58 (314)
T COG0451 1 MRILVTGGAGFIGSHLVERLLAAG---HDVRGLDRLRDGLDPLLSGVEFVVLD-------------------LTDRDLVD 58 (314)
T ss_pred CeEEEEcCcccHHHHHHHHHHhCC---CeEEEEeCCCccccccccccceeeec-------------------ccchHHHH
Confidence 34999995 999999999999985 44667776444332211000111110 01124555
Q ss_pred HHhcCC-CEEEEeccCCCCccCCh
Q 014946 138 NALKGS-DLVFITAGMGGGTGSGA 160 (415)
Q Consensus 138 ~~le~~-D~~~I~agLGGGTGSG~ 160 (415)
...+.+ |.|+-+++.....+...
T Consensus 59 ~~~~~~~d~vih~aa~~~~~~~~~ 82 (314)
T COG0451 59 ELAKGVPDAVIHLAAQSSVPDSNA 82 (314)
T ss_pred HHHhcCCCEEEEccccCchhhhhh
Confidence 666667 99999999888776643
No 332
>PRK06179 short chain dehydrogenase; Provisional
Probab=47.58 E-value=1.3e+02 Score=28.38 Aligned_cols=81 Identities=14% Similarity=0.202 Sum_probs=48.2
Q ss_pred CCeEEEEee-CcchHHHHHHHHHcCCCceEEEEEECCHHHHhcCCCCCCeeccccccccCCCCCCchhhHHHHHHHHHHH
Q 014946 58 TAKIKVVGV-GGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSAAENPLQIGDLLTRGLGTGGNPLLGEQAAEESKEVI 136 (415)
Q Consensus 58 ~~~i~vIGv-GgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~~~~~ki~ig~~~t~G~GaG~n~~~G~~~aee~~e~I 136 (415)
..++.|.|- |+-|..++.+|.+.|. +.+++.-|...+.... .-.+..+. + .|+ +..+...+.+
T Consensus 4 ~~~vlVtGasg~iG~~~a~~l~~~g~---~V~~~~r~~~~~~~~~-~~~~~~~D-~-------~d~----~~~~~~~~~~ 67 (270)
T PRK06179 4 SKVALVTGASSGIGRATAEKLARAGY---RVFGTSRNPARAAPIP-GVELLELD-V-------TDD----ASVQAAVDEV 67 (270)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCC---EEEEEeCChhhccccC-CCeeEEee-c-------CCH----HHHHHHHHHH
Confidence 456888885 6778899999988874 4566666665543221 11111111 1 122 2334455556
Q ss_pred HHHhcCCCEEEEeccCCC
Q 014946 137 ANALKGSDLVFITAGMGG 154 (415)
Q Consensus 137 ~~~le~~D~~~I~agLGG 154 (415)
.+.....|.++-++|.+.
T Consensus 68 ~~~~g~~d~li~~ag~~~ 85 (270)
T PRK06179 68 IARAGRIDVLVNNAGVGL 85 (270)
T ss_pred HHhCCCCCEEEECCCCCC
Confidence 666677899988887653
No 333
>TIGR00196 yjeF_cterm yjeF C-terminal region, hydroxyethylthiazole kinase-related. The present model may hit hydroxyethylthiazole kinase, an enzyme associated with thiamine biosynthesis.
Probab=47.55 E-value=1.2e+02 Score=29.37 Aligned_cols=39 Identities=21% Similarity=0.199 Sum_probs=26.9
Q ss_pred HHHHHHHHhcCCCEEEEeccCCCCccCChH-HHHHHHHHHhCCc
Q 014946 132 SKEVIANALKGSDLVFITAGMGGGTGSGAA-PVVAQIAKEAGYL 174 (415)
Q Consensus 132 ~~e~I~~~le~~D~~~I~agLGGGTGSG~a-pvia~~ake~g~~ 174 (415)
..+++.+.++.+|.+.| |+|+|++.. -.+.+.+++++.+
T Consensus 82 ~~~~~~~~~~~~davvi----g~Gl~~~~~~~~l~~~~~~~~~p 121 (272)
T TIGR00196 82 KVDEDEELLERYDVVVI----GPGLGQDPSFKKAVEEVLELDKP 121 (272)
T ss_pred hHHHHHhhhccCCEEEE----cCCCCCCHHHHHHHHHHHhcCCC
Confidence 45667777889998887 777888764 2245556666654
No 334
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=47.48 E-value=48 Score=33.62 Aligned_cols=30 Identities=23% Similarity=0.468 Sum_probs=22.9
Q ss_pred CeEEEEee-CcchHHHHHHHHHcCCCceEEEEE
Q 014946 59 AKIKVVGV-GGGGNNAVNRMIGSGLQGVDFYAI 90 (415)
Q Consensus 59 ~~i~vIGv-GgaG~niv~~l~~~~~~~v~~iai 90 (415)
+||.|||. |..|...+..|.++ ++++.+++
T Consensus 3 ~kVaIiGAtG~vG~~l~~~L~~~--p~~elv~v 33 (343)
T PRK00436 3 IKVGIVGASGYTGGELLRLLLNH--PEVEIVAV 33 (343)
T ss_pred eEEEEECCCCHHHHHHHHHHHcC--CCceEEEE
Confidence 78999998 77888888888765 34565554
No 335
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=47.39 E-value=93 Score=29.39 Aligned_cols=86 Identities=12% Similarity=0.066 Sum_probs=50.4
Q ss_pred CCCCCeEEEEee-CcchHHHHHHHHHcCCCceEEEEEECCHHHHhcCCC-----CCCee-ccccccccCCCCCCchhhHH
Q 014946 55 PMETAKIKVVGV-GGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSAA-----ENPLQ-IGDLLTRGLGTGGNPLLGEQ 127 (415)
Q Consensus 55 ~~~~~~i~vIGv-GgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~~~-----~~ki~-ig~~~t~G~GaG~n~~~G~~ 127 (415)
++...++.|.|. |+.|..++.+|.+.|. +.+.++.+...++.... ..++. +--.+ .+ .+
T Consensus 7 ~~~~k~~lItGa~~~iG~~ia~~l~~~G~---~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl-------~~----~~ 72 (265)
T PRK07097 7 SLKGKIALITGASYGIGFAIAKAYAKAGA---TIVFNDINQELVDKGLAAYRELGIEAHGYVCDV-------TD----ED 72 (265)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCC---eEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCC-------CC----HH
Confidence 445567888887 5778899999998874 46666766655543210 11111 10001 11 22
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeccCCC
Q 014946 128 AAEESKEVIANALKGSDLVFITAGMGG 154 (415)
Q Consensus 128 ~aee~~e~I~~~le~~D~~~I~agLGG 154 (415)
..+...+++.+.+...|.++.++|..+
T Consensus 73 ~~~~~~~~~~~~~~~id~li~~ag~~~ 99 (265)
T PRK07097 73 GVQAMVSQIEKEVGVIDILVNNAGIIK 99 (265)
T ss_pred HHHHHHHHHHHhCCCCCEEEECCCCCC
Confidence 344455566666667899988888654
No 336
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=47.15 E-value=1e+02 Score=28.03 Aligned_cols=39 Identities=18% Similarity=0.186 Sum_probs=28.2
Q ss_pred CCCeEEEEee-CcchHHHHHHHHHcCCCceEEEEEECCHHHHh
Q 014946 57 ETAKIKVVGV-GGGGNNAVNRMIGSGLQGVDFYAINTDSQALL 98 (415)
Q Consensus 57 ~~~~i~vIGv-GgaG~niv~~l~~~~~~~v~~iainTD~~~L~ 98 (415)
...++.|+|- |+.|..++..|.+.+. +.+.++-+.+.+.
T Consensus 27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~---~V~l~~R~~~~~~ 66 (194)
T cd01078 27 KGKTAVVLGGTGPVGQRAAVLLAREGA---RVVLVGRDLERAQ 66 (194)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEcCCHHHHH
Confidence 4578999996 9999999999888763 4455555555443
No 337
>PRK08605 D-lactate dehydrogenase; Validated
Probab=46.91 E-value=29 Score=35.05 Aligned_cols=38 Identities=24% Similarity=0.347 Sum_probs=28.6
Q ss_pred CCCCCCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECC
Q 014946 54 APMETAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTD 93 (415)
Q Consensus 54 ~~~~~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD 93 (415)
.....++|.|||.|..|..++.+|.+ ++ ++..++.|..
T Consensus 142 ~~l~g~~VgIIG~G~IG~~vA~~L~~-~~-g~~V~~~d~~ 179 (332)
T PRK08605 142 RSIKDLKVAVIGTGRIGLAVAKIFAK-GY-GSDVVAYDPF 179 (332)
T ss_pred ceeCCCEEEEECCCHHHHHHHHHHHh-cC-CCEEEEECCC
Confidence 34568899999999999999999843 32 3566777654
No 338
>PLN02778 3,5-epimerase/4-reductase
Probab=46.90 E-value=1.7e+02 Score=28.63 Aligned_cols=27 Identities=22% Similarity=0.139 Sum_probs=23.1
Q ss_pred CCCCeEEEEee-CcchHHHHHHHHHcCC
Q 014946 56 METAKIKVVGV-GGGGNNAVNRMIGSGL 82 (415)
Q Consensus 56 ~~~~~i~vIGv-GgaG~niv~~l~~~~~ 82 (415)
.-.|||+|.|- |-.|.+++.+|.+.|.
T Consensus 7 ~~~~kiLVtG~tGfiG~~l~~~L~~~g~ 34 (298)
T PLN02778 7 SATLKFLIYGKTGWIGGLLGKLCQEQGI 34 (298)
T ss_pred CCCCeEEEECCCCHHHHHHHHHHHhCCC
Confidence 34589999995 8899999999999875
No 339
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=46.86 E-value=33 Score=34.97 Aligned_cols=35 Identities=17% Similarity=0.247 Sum_probs=27.7
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHH
Q 014946 59 AKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQA 96 (415)
Q Consensus 59 ~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~ 96 (415)
++|.|||-|+-|--++....+.| .+++++|.|..+
T Consensus 3 ~~igilG~Gql~~ml~~aa~~lG---~~v~~~d~~~~~ 37 (372)
T PRK06019 3 KTIGIIGGGQLGRMLALAAAPLG---YKVIVLDPDPDS 37 (372)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CEEEEEeCCCCC
Confidence 57999999999988888777766 458888876654
No 340
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=46.85 E-value=64 Score=32.83 Aligned_cols=82 Identities=26% Similarity=0.221 Sum_probs=52.4
Q ss_pred CCCeEEEEeeCc-chHHHHHHHHHcCCCceEEEEEEC-CH---HHHhcCC-CCCCe--eccccccccCCCCCCchhhHHH
Q 014946 57 ETAKIKVVGVGG-GGNNAVNRMIGSGLQGVDFYAINT-DS---QALLQSA-AENPL--QIGDLLTRGLGTGGNPLLGEQA 128 (415)
Q Consensus 57 ~~~~i~vIGvGg-aG~niv~~l~~~~~~~v~~iainT-D~---~~L~~~~-~~~ki--~ig~~~t~G~GaG~n~~~G~~~ 128 (415)
..+++.|-|.+| .|+-||..|+.+|.. |..-+=|. |. ++|...+ ++.++ +.+.
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rGY~-V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aD------------------ 65 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRGYT-VRGTVRDPEDEKKTEHLRKLEGAKERLKLFKAD------------------ 65 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCCCE-EEEEEcCcchhhhHHHHHhcccCcccceEEecc------------------
Confidence 568899998765 688899999999865 55433333 42 2355553 23332 2222
Q ss_pred HHHHHHHHHHHhcCCCEEEEeccCCCCccC
Q 014946 129 AEESKEVIANALKGSDLVFITAGMGGGTGS 158 (415)
Q Consensus 129 aee~~e~I~~~le~~D~~~I~agLGGGTGS 158 (415)
-.+.+.+.+++++||+||=+|+-==....
T Consensus 66 -L~d~~sf~~ai~gcdgVfH~Asp~~~~~~ 94 (327)
T KOG1502|consen 66 -LLDEGSFDKAIDGCDGVFHTASPVDFDLE 94 (327)
T ss_pred -ccccchHHHHHhCCCEEEEeCccCCCCCC
Confidence 12446678889999999998876555444
No 341
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=46.70 E-value=87 Score=28.93 Aligned_cols=39 Identities=18% Similarity=0.254 Sum_probs=30.8
Q ss_pred CCCeEEEEee-CcchHHHHHHHHHcCCCceEEEEEECCHHHHh
Q 014946 57 ETAKIKVVGV-GGGGNNAVNRMIGSGLQGVDFYAINTDSQALL 98 (415)
Q Consensus 57 ~~~~i~vIGv-GgaG~niv~~l~~~~~~~v~~iainTD~~~L~ 98 (415)
.+.+++|+|. |+-|..++.+|.+.|. ..+.++.|...+.
T Consensus 4 ~~~~~lItG~~g~iG~~~a~~l~~~G~---~vi~~~r~~~~~~ 43 (253)
T PRK08217 4 KDKVIVITGGAQGLGRAMAEYLAQKGA---KLALIDLNQEKLE 43 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEeCCHHHHH
Confidence 4567999998 9999999999998874 4677777765554
No 342
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=46.66 E-value=29 Score=35.60 Aligned_cols=59 Identities=25% Similarity=0.267 Sum_probs=39.1
Q ss_pred CCCccCChHHHHHHHHHHh------------------CCceEEEEecCCCCchhhhHHHHHHHHHHHHhhCCEEEEE
Q 014946 153 GGGTGSGAAPVVAQIAKEA------------------GYLTVGVVTYPFSFEGRKRSSQALEAIERLQKNVDTLIVI 211 (415)
Q Consensus 153 GGGTGSG~apvia~~ake~------------------g~~tvavvtlP~~~Eg~~r~~nA~~~l~~L~e~~D~viv~ 211 (415)
+||||||-+.++-.++... ...++-..|-|...||.-+.--..+--+.|+.--|.+|+-
T Consensus 179 sGGTGSGKTTlLNal~~~i~~~eRvItiEDtaELql~~ph~vrL~TR~~n~Eg~gevtm~dLvkn~LRmRPDRIiVG 255 (355)
T COG4962 179 SGGTGSGKTTLLNALSGFIDSDERVITIEDTAELQLAHPHVVRLETRPPNVEGTGEVTMRDLVKNALRMRPDRIIVG 255 (355)
T ss_pred eCCCCCCHHHHHHHHHhcCCCcccEEEEeehhhhccCCCceEEEeecCCCCCCcceEEHHHHHHHHhhcCccceEEE
Confidence 6899999999887766432 1247778888988888644333344444555556777764
No 343
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=46.59 E-value=92 Score=29.33 Aligned_cols=81 Identities=14% Similarity=0.138 Sum_probs=47.2
Q ss_pred CeEEEEee-CcchHHHHHHHHHcCCCceEEEEEECCHHHHhcCC----CCCCee-ccccccccCCCCCCchhhHHHHHHH
Q 014946 59 AKIKVVGV-GGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSA----AENPLQ-IGDLLTRGLGTGGNPLLGEQAAEES 132 (415)
Q Consensus 59 ~~i~vIGv-GgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~~----~~~ki~-ig~~~t~G~GaG~n~~~G~~~aee~ 132 (415)
|+++|.|- ||-|..++.+|.+.|. +.+.++-+...++... ...++. +- .|.. -.+..++.
T Consensus 1 m~vlItGas~gIG~aia~~l~~~G~---~V~~~~r~~~~~~~~~~~l~~~~~~~~~~----------~Dv~-d~~~~~~~ 66 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKGA---RVVISSRNEENLEKALKELKEYGEVYAVK----------ADLS-DKDDLKNL 66 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHHHhcCCceEEE----------cCCC-CHHHHHHH
Confidence 57889986 6678899999998874 4566666665554321 111111 10 0111 12334445
Q ss_pred HHHHHHHhcCCCEEEEeccCC
Q 014946 133 KEVIANALKGSDLVFITAGMG 153 (415)
Q Consensus 133 ~e~I~~~le~~D~~~I~agLG 153 (415)
.+++.+.+...|.++-.+|..
T Consensus 67 ~~~~~~~~g~id~li~naG~~ 87 (259)
T PRK08340 67 VKEAWELLGGIDALVWNAGNV 87 (259)
T ss_pred HHHHHHhcCCCCEEEECCCCC
Confidence 566666667889888777653
No 344
>TIGR02198 rfaE_dom_I rfaE bifunctional protein, domain I. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. The longer, N-terminal domain I (this family) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (TIGR02199) adds ADP to yield ADP-D-glycero-D-manno-heptose.
Probab=46.51 E-value=2.8e+02 Score=26.85 Aligned_cols=47 Identities=17% Similarity=0.145 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhcCCCEEEEeccCCCCccCChHHHHHHHHHHhCCceE
Q 014946 130 EESKEVIANALKGSDLVFITAGMGGGTGSGAAPVVAQIAKEAGYLTV 176 (415)
Q Consensus 130 ee~~e~I~~~le~~D~~~I~agLGGGTGSG~apvia~~ake~g~~tv 176 (415)
.+..+.+.+.++++|.+++....-|+..--....+++.+++.+++++
T Consensus 131 ~~~~~~~~~~l~~~~~v~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~ 177 (315)
T TIGR02198 131 ARLLAAIREQLASADAVVLSDYAKGVLTPRVVQEVIAAARKHGKPVL 177 (315)
T ss_pred HHHHHHHHhhhhhCCEEEEecCCCCccCHHHHHHHHHHHHhcCCCEE
Confidence 44455667778899988886332122111122335666777776543
No 345
>PLN00016 RNA-binding protein; Provisional
Probab=46.07 E-value=24 Score=35.77 Aligned_cols=40 Identities=18% Similarity=0.215 Sum_probs=28.7
Q ss_pred ccCCCCCCCeEEEE----ee-CcchHHHHHHHHHcCCCceEEEEEECC
Q 014946 51 CSFAPMETAKIKVV----GV-GGGGNNAVNRMIGSGLQGVDFYAINTD 93 (415)
Q Consensus 51 ~~~~~~~~~~i~vI----Gv-GgaG~niv~~l~~~~~~~v~~iainTD 93 (415)
........++|+|+ |- |..|..++.+|.+.|. +..++.-+
T Consensus 45 ~~~~~~~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~---~V~~l~R~ 89 (378)
T PLN00016 45 AAAAAVEKKKVLIVNTNSGGHAFIGFYLAKELVKAGH---EVTLFTRG 89 (378)
T ss_pred hhhcccccceEEEEeccCCCceeEhHHHHHHHHHCCC---EEEEEecC
Confidence 34445556889999 64 8899999999999874 34445443
No 346
>PRK06500 short chain dehydrogenase; Provisional
Probab=45.84 E-value=95 Score=28.70 Aligned_cols=83 Identities=22% Similarity=0.285 Sum_probs=48.5
Q ss_pred CCCeEEEEee-CcchHHHHHHHHHcCCCceEEEEEECCHHHHhcCCC--CCCee-ccccccccCCCCCCchhhHHHHHHH
Q 014946 57 ETAKIKVVGV-GGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSAA--ENPLQ-IGDLLTRGLGTGGNPLLGEQAAEES 132 (415)
Q Consensus 57 ~~~~i~vIGv-GgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~~~--~~ki~-ig~~~t~G~GaG~n~~~G~~~aee~ 132 (415)
.+.++.|.|. |+-|..++.+|.+.|. +.+++..+...+..... ..++. +--.+ .|+ +..+..
T Consensus 5 ~~k~vlItGasg~iG~~la~~l~~~g~---~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~-------~~~----~~~~~~ 70 (249)
T PRK06500 5 QGKTALITGGTSGIGLETARQFLAEGA---RVAITGRDPASLEAARAELGESALVIRADA-------GDV----AAQKAL 70 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC---EEEEecCCHHHHHHHHHHhCCceEEEEecC-------CCH----HHHHHH
Confidence 3567899986 8889999999998874 46666666554432211 01111 00000 111 223444
Q ss_pred HHHHHHHhcCCCEEEEeccCC
Q 014946 133 KEVIANALKGSDLVFITAGMG 153 (415)
Q Consensus 133 ~e~I~~~le~~D~~~I~agLG 153 (415)
.+.+.+.....|.++-.+|..
T Consensus 71 ~~~~~~~~~~id~vi~~ag~~ 91 (249)
T PRK06500 71 AQALAEAFGRLDAVFINAGVA 91 (249)
T ss_pred HHHHHHHhCCCCEEEECCCCC
Confidence 556666667889988877653
No 347
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=45.60 E-value=97 Score=29.51 Aligned_cols=29 Identities=24% Similarity=0.387 Sum_probs=23.2
Q ss_pred eEEEEee-CcchHHHHHHHHHcCCCceEEEEEE
Q 014946 60 KIKVVGV-GGGGNNAVNRMIGSGLQGVDFYAIN 91 (415)
Q Consensus 60 ~i~vIGv-GgaG~niv~~l~~~~~~~v~~iain 91 (415)
||+|+|. |..|..++.+|.+.|. +.++++
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g~---~v~~~~ 30 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEGR---VVVALT 30 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCC---EEEEeC
Confidence 5899996 9999999999998763 344554
No 348
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=45.37 E-value=34 Score=34.32 Aligned_cols=35 Identities=17% Similarity=0.240 Sum_probs=28.2
Q ss_pred CCCCCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEEC
Q 014946 55 PMETAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINT 92 (415)
Q Consensus 55 ~~~~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainT 92 (415)
.....++.|||+|..|..++.+|...|. +.+++|.
T Consensus 133 ~l~g~tvgIvG~G~IG~~vA~~l~afG~---~V~~~~~ 167 (312)
T PRK15469 133 HREDFTIGILGAGVLGSKVAQSLQTWGF---PLRCWSR 167 (312)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCC---EEEEEeC
Confidence 3456899999999999999999988774 4566664
No 349
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=45.33 E-value=26 Score=34.14 Aligned_cols=31 Identities=32% Similarity=0.521 Sum_probs=25.5
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCceEEEEE
Q 014946 59 AKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAI 90 (415)
Q Consensus 59 ~~i~vIGvGgaG~niv~~l~~~~~~~v~~iai 90 (415)
|||.|||.|..|+-++..|.+.|. +|.+++-
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~-~V~~~~r 31 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGR-DVTFLVR 31 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCC-ceEEEec
Confidence 689999999999999999998874 3555543
No 350
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=45.18 E-value=2.2e+02 Score=30.08 Aligned_cols=38 Identities=24% Similarity=0.553 Sum_probs=30.0
Q ss_pred CCeEEEEee----CcchHHHHHHHHHcCCCceEEEEEECCHHH
Q 014946 58 TAKIKVVGV----GGGGNNAVNRMIGSGLQGVDFYAINTDSQA 96 (415)
Q Consensus 58 ~~~i~vIGv----GgaG~niv~~l~~~~~~~v~~iainTD~~~ 96 (415)
..+|.|||. |.-|..++.+|.+.|..+ ..+.||-....
T Consensus 7 p~siavvGaS~~~~~~g~~~~~~l~~~gf~g-~v~~Vnp~~~~ 48 (447)
T TIGR02717 7 PKSVAVIGASRDPGKVGYAIMKNLIEGGYKG-KIYPVNPKAGE 48 (447)
T ss_pred CCEEEEEccCCCCCchHHHHHHHHHhCCCCC-cEEEECCCCCc
Confidence 456999999 668999999999988764 56888875443
No 351
>PLN03139 formate dehydrogenase; Provisional
Probab=45.05 E-value=22 Score=36.90 Aligned_cols=36 Identities=17% Similarity=0.207 Sum_probs=29.1
Q ss_pred CCCCCCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEEC
Q 014946 54 APMETAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINT 92 (415)
Q Consensus 54 ~~~~~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainT 92 (415)
......+|.|||+|..|..++.+|...|. +.++.|.
T Consensus 195 ~~L~gktVGIVG~G~IG~~vA~~L~afG~---~V~~~d~ 230 (386)
T PLN03139 195 YDLEGKTVGTVGAGRIGRLLLQRLKPFNC---NLLYHDR 230 (386)
T ss_pred cCCCCCEEEEEeecHHHHHHHHHHHHCCC---EEEEECC
Confidence 34578899999999999999999987764 4566664
No 352
>PRK13949 shikimate kinase; Provisional
Probab=45.02 E-value=57 Score=29.41 Aligned_cols=34 Identities=26% Similarity=0.394 Sum_probs=26.1
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHH
Q 014946 59 AKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQ 95 (415)
Q Consensus 59 ~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~ 95 (415)
.+|.+||.-|+|-..+-+++...+. +-.+|+|..
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~---~~~id~D~~ 35 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELG---LSFIDLDFF 35 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC---CCeecccHH
Confidence 3799999999999998888765432 447778853
No 353
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=44.71 E-value=28 Score=36.05 Aligned_cols=35 Identities=14% Similarity=0.337 Sum_probs=27.1
Q ss_pred CCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHH
Q 014946 58 TAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQ 95 (415)
Q Consensus 58 ~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~ 95 (415)
..+|.|||+|+.|..++..|.+.|. +....|.+..
T Consensus 3 ~~~i~iiGlG~~G~slA~~l~~~G~---~V~g~D~~~~ 37 (418)
T PRK00683 3 LQRVVVLGLGVTGKSIARFLAQKGV---YVIGVDKSLE 37 (418)
T ss_pred CCeEEEEEECHHHHHHHHHHHHCCC---EEEEEeCCcc
Confidence 4579999999999999988888874 3556665443
No 354
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=44.64 E-value=1.5e+02 Score=31.02 Aligned_cols=204 Identities=23% Similarity=0.277 Sum_probs=104.0
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHhcCCCC-CCeeccccccccCCCCCCchhhHHHHHHHHH---
Q 014946 59 AKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSAAE-NPLQIGDLLTRGLGTGGNPLLGEQAAEESKE--- 134 (415)
Q Consensus 59 ~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~~~~-~ki~ig~~~t~G~GaG~n~~~G~~~aee~~e--- 134 (415)
|||.|||.|=.|.-..--|.+.| -+.+++|-|....+.+... ..|.= |.+ ++..++...
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~G---HeVv~vDid~~KV~~ln~g~~PI~E-------------pgL-e~ll~~~~~~gR 63 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELG---HEVVCVDIDESKVELLNKGISPIYE-------------PGL-EELLKENLASGR 63 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcC---CeEEEEeCCHHHHHHHhCCCCCCcC-------------ccH-HHHHHhccccCc
Confidence 79999999999998877777777 3578889988877654321 11211 000 111111111
Q ss_pred -----HHHHHhcCCCEEEEeccCCCC-ccCChHHHHHHHHHHhC----CceEEEE--ecCCC-CchhhhHHHHHH-----
Q 014946 135 -----VIANALKGSDLVFITAGMGGG-TGSGAAPVVAQIAKEAG----YLTVGVV--TYPFS-FEGRKRSSQALE----- 196 (415)
Q Consensus 135 -----~I~~~le~~D~~~I~agLGGG-TGSG~apvia~~ake~g----~~tvavv--tlP~~-~Eg~~r~~nA~~----- 196 (415)
....+++++|.+||+.|.-=. +|+-=...+...+++.+ ...+-|+ |.|-- .|..+++.+...
T Consensus 64 l~fTtd~~~a~~~adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~~~~~f 143 (414)
T COG1004 64 LRFTTDYEEAVKDADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREENSGKDF 143 (414)
T ss_pred EEEEcCHHHHHhcCCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhhcccCCc
Confidence 235567789999998876544 44444455555555543 1122121 34432 233333322221
Q ss_pred ----HHHHHHh--------hCCEEEEEeCch-----hhhhccc----cCCh-------HHHHhh-hhhhhhccccccccc
Q 014946 197 ----AIERLQK--------NVDTLIVIPNDR-----LLDITDE----QTAL-------QDAFLL-ADDVLRQGVQGISDI 247 (415)
Q Consensus 197 ----~l~~L~e--------~~D~viv~dNd~-----L~~~~~~----~~~i-------~~af~~-~N~~i~~~i~~It~~ 247 (415)
.-+-|+| +-|.+++=..+. +.+++.. +.++ .+.-+. +|..++.-|+-+.++
T Consensus 144 ~v~~NPEFLREG~Av~D~~~PdRIViG~~~~~a~~~~~ely~~~~~~~~p~l~t~~~~AE~IKyaaNafLAtKIsFiNEi 223 (414)
T COG1004 144 EVASNPEFLREGSAVYDFLYPDRIVIGVRSERAAAVLRELYAPFLRQDVPILFTDLREAELIKYAANAFLATKISFINEI 223 (414)
T ss_pred eEecChHHhcCcchhhhccCCCeEEEccCChhHHHHHHHHHhhhhhcCCCEEEecchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222332 234444433222 1222211 1111 122222 455677666655555
Q ss_pred cccCceeeechhhhhhhccC-C--CeeEEEeeecC
Q 014946 248 ITIPGLVNVDFADVKAVMKD-S--GTAMLGVGVSS 279 (415)
Q Consensus 248 i~~~G~invD~~di~t~L~~-~--g~~~ig~G~a~ 279 (415)
-.....+.+|..++..-+.- + |.+|+..|.+-
T Consensus 224 a~ice~~g~D~~~V~~gIGlD~RIG~~fl~aG~Gy 258 (414)
T COG1004 224 ANICEKVGADVKQVAEGIGLDPRIGNHFLNAGFGY 258 (414)
T ss_pred HHHHHHhCCCHHHHHHHcCCCchhhHhhCCCCCCC
Confidence 55555677888888776553 2 45666555543
No 355
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=44.54 E-value=28 Score=36.53 Aligned_cols=41 Identities=15% Similarity=0.414 Sum_probs=35.2
Q ss_pred cCCCCCCCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEEC
Q 014946 52 SFAPMETAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINT 92 (415)
Q Consensus 52 ~~~~~~~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainT 92 (415)
...+....||.+.|.|-||..+++.|...|+..-+++.+|+
T Consensus 193 ~gk~l~d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~~~D~ 233 (432)
T COG0281 193 TGKKLKDQKIVINGAGAAGIAIADLLVAAGVKEENIFVVDR 233 (432)
T ss_pred hCCCccceEEEEeCCcHHHHHHHHHHHHhCCCcccEEEEec
Confidence 44566788999999999999999999999987667888876
No 356
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=44.47 E-value=46 Score=30.39 Aligned_cols=38 Identities=18% Similarity=0.302 Sum_probs=29.4
Q ss_pred CCCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHH
Q 014946 57 ETAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQAL 97 (415)
Q Consensus 57 ~~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L 97 (415)
...++.|+|.|-+|-.++.+|...| ++....++|+...
T Consensus 22 ~Gk~vvV~GYG~vG~g~A~~lr~~G---a~V~V~e~DPi~a 59 (162)
T PF00670_consen 22 AGKRVVVIGYGKVGKGIARALRGLG---ARVTVTEIDPIRA 59 (162)
T ss_dssp TTSEEEEE--SHHHHHHHHHHHHTT----EEEEE-SSHHHH
T ss_pred CCCEEEEeCCCcccHHHHHHHhhCC---CEEEEEECChHHH
Confidence 4678999999999999999999887 4578899998754
No 357
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=44.27 E-value=27 Score=36.14 Aligned_cols=39 Identities=18% Similarity=0.174 Sum_probs=31.0
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHhcCC
Q 014946 59 AKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSA 101 (415)
Q Consensus 59 ~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~~ 101 (415)
|||.|||.|-.|.-++. ++..| .+.+.+|.|.+.++.+.
T Consensus 1 mkI~VIGlGyvGl~~A~-~lA~G---~~VigvD~d~~kv~~l~ 39 (388)
T PRK15057 1 MKITISGTGYVGLSNGL-LIAQN---HEVVALDILPSRVAMLN 39 (388)
T ss_pred CEEEEECCCHHHHHHHH-HHHhC---CcEEEEECCHHHHHHHH
Confidence 68999999999999995 44445 45789999988877653
No 358
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=43.99 E-value=15 Score=36.88 Aligned_cols=39 Identities=23% Similarity=0.304 Sum_probs=31.2
Q ss_pred CCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHhc
Q 014946 58 TAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQ 99 (415)
Q Consensus 58 ~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~~ 99 (415)
-.|+.|||-|.-|.-|+..+...|+ +....|.+.+.+++
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~G~---~V~l~D~~~~~~~~ 41 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALAGY---DVVLKDISPEALER 41 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhcCC---ceEEEeCCHHHHHH
Confidence 4689999999999999999887554 46788887666654
No 359
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=43.93 E-value=35 Score=35.39 Aligned_cols=35 Identities=23% Similarity=0.341 Sum_probs=28.5
Q ss_pred CCCCCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEEC
Q 014946 55 PMETAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINT 92 (415)
Q Consensus 55 ~~~~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainT 92 (415)
.....++.|||+|..|..++.++...|. +.+++|.
T Consensus 113 ~l~gktvGIIG~G~IG~~va~~l~a~G~---~V~~~Dp 147 (381)
T PRK00257 113 DLAERTYGVVGAGHVGGRLVRVLRGLGW---KVLVCDP 147 (381)
T ss_pred CcCcCEEEEECCCHHHHHHHHHHHHCCC---EEEEECC
Confidence 4557899999999999999999988775 4666664
No 360
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=43.78 E-value=62 Score=29.65 Aligned_cols=83 Identities=18% Similarity=0.188 Sum_probs=46.9
Q ss_pred CCeEEEEee-CcchHHHHHHHHHcCCCceEEEEEECCHHHHhcCC-----CCCCeeccccccccCCCCCCchhhHHHHHH
Q 014946 58 TAKIKVVGV-GGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSA-----AENPLQIGDLLTRGLGTGGNPLLGEQAAEE 131 (415)
Q Consensus 58 ~~~i~vIGv-GgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~~-----~~~ki~ig~~~t~G~GaG~n~~~G~~~aee 131 (415)
.++++|+|. |+-|..++++|.+.|.. + .+....+...+.... ...++.+ ..+ . -.++ +..++
T Consensus 6 ~~~vlItGasg~iG~~l~~~l~~~g~~-v-~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-D-~~~~----~~v~~ 73 (249)
T PRK12825 6 GRVALVTGAARGLGRAIALRLARAGAD-V-VVHYRSDEEAAEELVEAVEALGRRAQA----VQA-D-VTDK----AALEA 73 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCe-E-EEEeCCCHHHHHHHHHHHHhcCCceEE----EEC-C-cCCH----HHHHH
Confidence 457999985 88899999999998753 3 344555544333211 1112211 000 0 0122 23344
Q ss_pred HHHHHHHHhcCCCEEEEeccC
Q 014946 132 SKEVIANALKGSDLVFITAGM 152 (415)
Q Consensus 132 ~~e~I~~~le~~D~~~I~agL 152 (415)
..+++.+.+.+.|.++.++|.
T Consensus 74 ~~~~~~~~~~~id~vi~~ag~ 94 (249)
T PRK12825 74 AVAAAVERFGRIDILVNNAGI 94 (249)
T ss_pred HHHHHHHHcCCCCEEEECCcc
Confidence 555566666788999888874
No 361
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=43.78 E-value=22 Score=34.55 Aligned_cols=40 Identities=25% Similarity=0.469 Sum_probs=33.4
Q ss_pred CCCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHhc
Q 014946 57 ETAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQ 99 (415)
Q Consensus 57 ~~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~~ 99 (415)
....+.|||-|+-|+-|++-....|+. .|.+|.|..+|.+
T Consensus 10 ~~~~V~ivGaG~MGSGIAQv~a~sg~~---V~l~d~~~~aL~~ 49 (298)
T KOG2304|consen 10 EIKNVAIVGAGQMGSGIAQVAATSGLN---VWLVDANEDALSR 49 (298)
T ss_pred cccceEEEcccccchhHHHHHHhcCCc---eEEecCCHHHHHH
Confidence 345699999999999999888888764 7889999888875
No 362
>PRK07454 short chain dehydrogenase; Provisional
Probab=43.70 E-value=1.3e+02 Score=27.75 Aligned_cols=37 Identities=19% Similarity=0.311 Sum_probs=27.5
Q ss_pred CeEEEEee-CcchHHHHHHHHHcCCCceEEEEEECCHHHHh
Q 014946 59 AKIKVVGV-GGGGNNAVNRMIGSGLQGVDFYAINTDSQALL 98 (415)
Q Consensus 59 ~~i~vIGv-GgaG~niv~~l~~~~~~~v~~iainTD~~~L~ 98 (415)
.++.|.|. |+.|..++.+|.++|. +.++++-+...+.
T Consensus 7 k~vlItG~sg~iG~~la~~l~~~G~---~V~~~~r~~~~~~ 44 (241)
T PRK07454 7 PRALITGASSGIGKATALAFAKAGW---DLALVARSQDALE 44 (241)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC---EEEEEeCCHHHHH
Confidence 45888886 8889999999999875 4666666655443
No 363
>PRK09242 tropinone reductase; Provisional
Probab=43.68 E-value=1.4e+02 Score=27.95 Aligned_cols=82 Identities=17% Similarity=0.242 Sum_probs=49.3
Q ss_pred CCeEEEEee-CcchHHHHHHHHHcCCCceEEEEEECCHHHHhcCCC-------CCCeeccccccccCCCCCCchhhHHHH
Q 014946 58 TAKIKVVGV-GGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSAA-------ENPLQIGDLLTRGLGTGGNPLLGEQAA 129 (415)
Q Consensus 58 ~~~i~vIGv-GgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~~~-------~~ki~ig~~~t~G~GaG~n~~~G~~~a 129 (415)
..++.|.|. |+-|..++.+|.+.|. +.+++..+...+++... ..++..=. .|.. -.+..
T Consensus 9 ~k~~lItGa~~gIG~~~a~~l~~~G~---~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~---------~Dl~-~~~~~ 75 (257)
T PRK09242 9 GQTALITGASKGIGLAIAREFLGLGA---DVLIVARDADALAQARDELAEEFPEREVHGLA---------ADVS-DDEDR 75 (257)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEE---------CCCC-CHHHH
Confidence 467888886 6789999999998874 46666666555443211 11111000 0111 12334
Q ss_pred HHHHHHHHHHhcCCCEEEEeccC
Q 014946 130 EESKEVIANALKGSDLVFITAGM 152 (415)
Q Consensus 130 ee~~e~I~~~le~~D~~~I~agL 152 (415)
++..+++.+.+...|.++.++|.
T Consensus 76 ~~~~~~~~~~~g~id~li~~ag~ 98 (257)
T PRK09242 76 RAILDWVEDHWDGLHILVNNAGG 98 (257)
T ss_pred HHHHHHHHHHcCCCCEEEECCCC
Confidence 55566677777789998888765
No 364
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=43.64 E-value=1.4e+02 Score=27.94 Aligned_cols=83 Identities=17% Similarity=0.231 Sum_probs=46.0
Q ss_pred CCCeEEEEee-CcchHHHHHHHHHcCCCceEEEEEEC-CHHHHhcCCCCCCeeccccccccCCCCCCchhhHHHHHHHHH
Q 014946 57 ETAKIKVVGV-GGGGNNAVNRMIGSGLQGVDFYAINT-DSQALLQSAAENPLQIGDLLTRGLGTGGNPLLGEQAAEESKE 134 (415)
Q Consensus 57 ~~~~i~vIGv-GgaG~niv~~l~~~~~~~v~~iainT-D~~~L~~~~~~~ki~ig~~~t~G~GaG~n~~~G~~~aee~~e 134 (415)
.+.++.|.|. |+.|..++.+|.+.|. +.+.+.. +...++.+....-..+.-.+ .| .+..++..+
T Consensus 6 ~~k~~lItGas~gIG~~~a~~l~~~G~---~v~~~~~~~~~~~~~l~~~~~~~~~~Dl-------~~----~~~~~~~~~ 71 (255)
T PRK06463 6 KGKVALITGGTRGIGRAIAEAFLREGA---KVAVLYNSAENEAKELREKGVFTIKCDV-------GN----RDQVKKSKE 71 (255)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC---EEEEEeCCcHHHHHHHHhCCCeEEEecC-------CC----HHHHHHHHH
Confidence 3567999986 7889999999998874 3334332 22223222111111111011 12 233444555
Q ss_pred HHHHHhcCCCEEEEeccCC
Q 014946 135 VIANALKGSDLVFITAGMG 153 (415)
Q Consensus 135 ~I~~~le~~D~~~I~agLG 153 (415)
++.+.....|.++-++|..
T Consensus 72 ~~~~~~~~id~li~~ag~~ 90 (255)
T PRK06463 72 VVEKEFGRVDVLVNNAGIM 90 (255)
T ss_pred HHHHHcCCCCEEEECCCcC
Confidence 6666667889988887754
No 365
>PRK07060 short chain dehydrogenase; Provisional
Probab=43.62 E-value=93 Score=28.66 Aligned_cols=40 Identities=20% Similarity=0.251 Sum_probs=30.9
Q ss_pred CCCCeEEEEee-CcchHHHHHHHHHcCCCceEEEEEECCHHHHh
Q 014946 56 METAKIKVVGV-GGGGNNAVNRMIGSGLQGVDFYAINTDSQALL 98 (415)
Q Consensus 56 ~~~~~i~vIGv-GgaG~niv~~l~~~~~~~v~~iainTD~~~L~ 98 (415)
+...++.|.|. |+.|..++..|.+.|. +.+.++.+.+.+.
T Consensus 7 ~~~~~~lItGa~g~iG~~~a~~l~~~g~---~V~~~~r~~~~~~ 47 (245)
T PRK07060 7 FSGKSVLVTGASSGIGRACAVALAQRGA---RVVAAARNAAALD 47 (245)
T ss_pred cCCCEEEEeCCcchHHHHHHHHHHHCCC---EEEEEeCCHHHHH
Confidence 44578999998 7899999999998874 4667777666554
No 366
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=43.59 E-value=28 Score=34.56 Aligned_cols=39 Identities=18% Similarity=0.528 Sum_probs=29.6
Q ss_pred CCCCCeEEEEeeCcchHHHHHHHHHc----CCCc----eEEEEEECC
Q 014946 55 PMETAKIKVVGVGGGGNNAVNRMIGS----GLQG----VDFYAINTD 93 (415)
Q Consensus 55 ~~~~~~i~vIGvGgaG~niv~~l~~~----~~~~----v~~iainTD 93 (415)
+....||.++|.|.||..|++.|... |+.. -++|.+|.+
T Consensus 22 ~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~ 68 (279)
T cd05312 22 PLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSK 68 (279)
T ss_pred ChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCC
Confidence 44578999999999999999998765 6621 256777653
No 367
>PRK13660 hypothetical protein; Provisional
Probab=43.58 E-value=1.3e+02 Score=28.09 Aligned_cols=78 Identities=27% Similarity=0.360 Sum_probs=46.5
Q ss_pred HHHHHHHHhc-CCCEEEEeccCCCCccCC--hHHHHHHHHHHhCCceEEEEecCCCCchhhhHHHHHHHHHHHHhhCCEE
Q 014946 132 SKEVIANALK-GSDLVFITAGMGGGTGSG--AAPVVAQIAKEAGYLTVGVVTYPFSFEGRKRSSQALEAIERLQKNVDTL 208 (415)
Q Consensus 132 ~~e~I~~~le-~~D~~~I~agLGGGTGSG--~apvia~~ake~g~~tvavvtlP~~~Eg~~r~~nA~~~l~~L~e~~D~v 208 (415)
..++|...++ +.+-|++ ||.-|.. ++-++.++-++++-+.+++ .+||..-+..=...-..-+..|.+.+|.+
T Consensus 31 L~~~l~~~~e~G~~wfi~----ggalG~d~wAaEvvl~LK~~yp~lkL~~-~~PF~~q~~~W~e~~q~~y~~i~~~aD~v 105 (182)
T PRK13660 31 IKRKLIALLEEGLEWVII----SGQLGVELWAAEVVLELKEEYPDLKLAV-ITPFEEHGENWNEANQEKLANILKQADFV 105 (182)
T ss_pred HHHHHHHHHHCCCCEEEE----CCcchHHHHHHHHHHHHHhhCCCeEEEE-EeCccchhhcCCHHHHHHHHHHHHhCCEE
Confidence 3455666666 4554444 3444443 4455666666776655544 36886544332333456677899999999
Q ss_pred EEEeCc
Q 014946 209 IVIPND 214 (415)
Q Consensus 209 iv~dNd 214 (415)
.++...
T Consensus 106 ~~vs~~ 111 (182)
T PRK13660 106 KSISKR 111 (182)
T ss_pred EEecCC
Confidence 999553
No 368
>PRK08462 biotin carboxylase; Validated
Probab=43.52 E-value=94 Score=32.37 Aligned_cols=95 Identities=17% Similarity=0.166 Sum_probs=56.3
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHH--HhcCCCCCCeeccccccccCCCCCCchhhHHHHHHHHHHH
Q 014946 59 AKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQA--LLQSAAENPLQIGDLLTRGLGTGGNPLLGEQAAEESKEVI 136 (415)
Q Consensus 59 ~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~--L~~~~~~~ki~ig~~~t~G~GaG~n~~~G~~~aee~~e~I 136 (415)
.||+|+|=|..+..++..+.+.|+. .+++.++... +....+++.+.+|.... ..++ .+.+.|
T Consensus 5 k~ili~~~g~~~~~~~~~~~~~G~~---~v~~~~~~d~~~~~~~~ad~~~~~~~~~~-----~~~y--------~~~~~l 68 (445)
T PRK08462 5 KRILIANRGEIALRAIRTIQEMGKE---AIAIYSTADKDALYLKYADAKICIGGAKS-----SESY--------LNIPAI 68 (445)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCC---EEEEechhhcCCchhhhCCEEEEeCCCch-----hccc--------CCHHHH
Confidence 5899999999999999999998864 7888774432 33334566676653210 0011 123445
Q ss_pred HHHhc--CCCEEEEeccCCCCccCChHHHHHHHHHHhCCc
Q 014946 137 ANALK--GSDLVFITAGMGGGTGSGAAPVVAQIAKEAGYL 174 (415)
Q Consensus 137 ~~~le--~~D~~~I~agLGGGTGSG~apvia~~ake~g~~ 174 (415)
.+..+ ++|+++-..|.= +.-+-+++++++.|+.
T Consensus 69 ~~~~~~~~~D~i~pg~g~l-----se~~~~a~~~e~~Gi~ 103 (445)
T PRK08462 69 ISAAEIFEADAIFPGYGFL-----SENQNFVEICSHHNIK 103 (445)
T ss_pred HHHHHHcCCCEEEECCCcc-----ccCHHHHHHHHHCCCe
Confidence 55443 688887765321 1113355556665544
No 369
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=43.40 E-value=2.5e+02 Score=30.32 Aligned_cols=26 Identities=15% Similarity=0.501 Sum_probs=20.5
Q ss_pred EeeCcchHHHHHHHHHcCCCceEEEEEEC
Q 014946 64 VGVGGGGNNAVNRMIGSGLQGVDFYAINT 92 (415)
Q Consensus 64 IGvGgaG~niv~~l~~~~~~~v~~iainT 92 (415)
||++.-.---++.|.+.| ++.+++|+
T Consensus 243 vg~~~~~~~r~~~l~~ag---~d~i~iD~ 268 (505)
T PLN02274 243 IGTRESDKERLEHLVKAG---VDVVVLDS 268 (505)
T ss_pred EcCCccHHHHHHHHHHcC---CCEEEEeC
Confidence 777666666788888886 56899998
No 370
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=43.08 E-value=45 Score=26.39 Aligned_cols=36 Identities=14% Similarity=0.277 Sum_probs=27.6
Q ss_pred CCCCCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEEC
Q 014946 55 PMETAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINT 92 (415)
Q Consensus 55 ~~~~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainT 92 (415)
+....++.|+|.|..|..++.+|.+.+.. +...+|.
T Consensus 20 ~~~~~~v~i~G~G~~g~~~a~~l~~~~~~--~v~v~~r 55 (86)
T cd05191 20 SLKGKTVVVLGAGEVGKGIAKLLADEGGK--KVVLCDR 55 (86)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCC--EEEEEcC
Confidence 34567899999999999999999988633 3445555
No 371
>PRK08265 short chain dehydrogenase; Provisional
Probab=42.93 E-value=1e+02 Score=29.16 Aligned_cols=84 Identities=14% Similarity=0.102 Sum_probs=50.1
Q ss_pred CCCCeEEEEee-CcchHHHHHHHHHcCCCceEEEEEECCHHHHhcCCC--CCCee-ccccccccCCCCCCchhhHHHHHH
Q 014946 56 METAKIKVVGV-GGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSAA--ENPLQ-IGDLLTRGLGTGGNPLLGEQAAEE 131 (415)
Q Consensus 56 ~~~~~i~vIGv-GgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~~~--~~ki~-ig~~~t~G~GaG~n~~~G~~~aee 131 (415)
+.+.++.|.|- |+-|..++.+|.+.|. +.+.++-+...++.... ..++. +. .|..- .+..++
T Consensus 4 ~~~k~vlItGas~gIG~~ia~~l~~~G~---~V~~~~r~~~~~~~~~~~~~~~~~~~~----------~Dl~~-~~~~~~ 69 (261)
T PRK08265 4 LAGKVAIVTGGATLIGAAVARALVAAGA---RVAIVDIDADNGAAVAASLGERARFIA----------TDITD-DAAIER 69 (261)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHhCCeeEEEE----------ecCCC-HHHHHH
Confidence 34568899987 7889999999998875 45666666554443211 11111 10 11111 233445
Q ss_pred HHHHHHHHhcCCCEEEEeccCC
Q 014946 132 SKEVIANALKGSDLVFITAGMG 153 (415)
Q Consensus 132 ~~e~I~~~le~~D~~~I~agLG 153 (415)
..+++.+.+...|.++-.+|..
T Consensus 70 ~~~~~~~~~g~id~lv~~ag~~ 91 (261)
T PRK08265 70 AVATVVARFGRVDILVNLACTY 91 (261)
T ss_pred HHHHHHHHhCCCCEEEECCCCC
Confidence 5566666677889988877653
No 372
>PLN02253 xanthoxin dehydrogenase
Probab=42.80 E-value=1.3e+02 Score=28.72 Aligned_cols=84 Identities=14% Similarity=0.143 Sum_probs=48.7
Q ss_pred CCCeEEEEee-CcchHHHHHHHHHcCCCceEEEEEECCHHHHhcC----CCCCCee-ccccccccCCCCCCchhhHHHHH
Q 014946 57 ETAKIKVVGV-GGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQS----AAENPLQ-IGDLLTRGLGTGGNPLLGEQAAE 130 (415)
Q Consensus 57 ~~~~i~vIGv-GgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~----~~~~ki~-ig~~~t~G~GaG~n~~~G~~~ae 130 (415)
.+.+++|.|. |+.|..++.+|.+.|. +.+.++-+...+++. ....++. +. .|.. -.+..+
T Consensus 17 ~~k~~lItGas~gIG~~la~~l~~~G~---~v~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~Dl~-d~~~~~ 82 (280)
T PLN02253 17 LGKVALVTGGATGIGESIVRLFHKHGA---KVCIVDLQDDLGQNVCDSLGGEPNVCFFH----------CDVT-VEDDVS 82 (280)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHhcCCCceEEEE----------eecC-CHHHHH
Confidence 4567888886 5789999999998874 456666554443321 1111111 10 0111 122344
Q ss_pred HHHHHHHHHhcCCCEEEEeccCCC
Q 014946 131 ESKEVIANALKGSDLVFITAGMGG 154 (415)
Q Consensus 131 e~~e~I~~~le~~D~~~I~agLGG 154 (415)
+..+++.+....+|.++-.+|..+
T Consensus 83 ~~~~~~~~~~g~id~li~~Ag~~~ 106 (280)
T PLN02253 83 RAVDFTVDKFGTLDIMVNNAGLTG 106 (280)
T ss_pred HHHHHHHHHhCCCCEEEECCCcCC
Confidence 555666666778999988887654
No 373
>PRK06841 short chain dehydrogenase; Provisional
Probab=42.79 E-value=1.4e+02 Score=27.71 Aligned_cols=82 Identities=15% Similarity=0.152 Sum_probs=48.1
Q ss_pred CCCeEEEEee-CcchHHHHHHHHHcCCCceEEEEEECCHHHHh---cCCCCCCe-eccccccccCCCCCCchhhHHHHHH
Q 014946 57 ETAKIKVVGV-GGGGNNAVNRMIGSGLQGVDFYAINTDSQALL---QSAAENPL-QIGDLLTRGLGTGGNPLLGEQAAEE 131 (415)
Q Consensus 57 ~~~~i~vIGv-GgaG~niv~~l~~~~~~~v~~iainTD~~~L~---~~~~~~ki-~ig~~~t~G~GaG~n~~~G~~~aee 131 (415)
.+.+++|.|. |+.|..++.+|.+.|. +.+.++.+..... ... ..++ .+. .|.. -.+..+.
T Consensus 14 ~~k~vlItGas~~IG~~la~~l~~~G~---~Vi~~~r~~~~~~~~~~~~-~~~~~~~~----------~Dl~-~~~~~~~ 78 (255)
T PRK06841 14 SGKVAVVTGGASGIGHAIAELFAAKGA---RVALLDRSEDVAEVAAQLL-GGNAKGLV----------CDVS-DSQSVEA 78 (255)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHhh-CCceEEEE----------ecCC-CHHHHHH
Confidence 4568999996 8899999999998874 4556665543221 111 0111 110 1111 1223444
Q ss_pred HHHHHHHHhcCCCEEEEeccCC
Q 014946 132 SKEVIANALKGSDLVFITAGMG 153 (415)
Q Consensus 132 ~~e~I~~~le~~D~~~I~agLG 153 (415)
..+++.+.....|.++-++|..
T Consensus 79 ~~~~~~~~~~~~d~vi~~ag~~ 100 (255)
T PRK06841 79 AVAAVISAFGRIDILVNSAGVA 100 (255)
T ss_pred HHHHHHHHhCCCCEEEECCCCC
Confidence 5566666667889988888764
No 374
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=42.72 E-value=51 Score=29.91 Aligned_cols=77 Identities=13% Similarity=0.207 Sum_probs=48.4
Q ss_pred ccCCCCCCCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHhcCCCCCCeeccccccccCCCCCCchhhHHHHH
Q 014946 51 CSFAPMETAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSAAENPLQIGDLLTRGLGTGGNPLLGEQAAE 130 (415)
Q Consensus 51 ~~~~~~~~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~~~~~ki~ig~~~t~G~GaG~n~~~G~~~ae 130 (415)
.......+.++.|||.|..|..++.++...|. +.+++|.....-.... . .|
T Consensus 29 ~~~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~---~V~~~d~~~~~~~~~~--------~-----~~------------- 79 (178)
T PF02826_consen 29 FPGRELRGKTVGIIGYGRIGRAVARRLKAFGM---RVIGYDRSPKPEEGAD--------E-----FG------------- 79 (178)
T ss_dssp TTBS-STTSEEEEESTSHHHHHHHHHHHHTT----EEEEEESSCHHHHHHH--------H-----TT-------------
T ss_pred CCccccCCCEEEEEEEcCCcCeEeeeeecCCc---eeEEecccCChhhhcc--------c-----cc-------------
Confidence 34445568999999999999999999987774 6888888655332000 0 00
Q ss_pred HHHHHHHHHhcCCCEEEEeccCCCCc
Q 014946 131 ESKEVIANALKGSDLVFITAGMGGGT 156 (415)
Q Consensus 131 e~~e~I~~~le~~D~~~I~agLGGGT 156 (415)
...+.+.+.++.||.++++.-+.--|
T Consensus 80 ~~~~~l~ell~~aDiv~~~~plt~~T 105 (178)
T PF02826_consen 80 VEYVSLDELLAQADIVSLHLPLTPET 105 (178)
T ss_dssp EEESSHHHHHHH-SEEEE-SSSSTTT
T ss_pred ceeeehhhhcchhhhhhhhhcccccc
Confidence 01123455667789888887766544
No 375
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=42.64 E-value=1.1e+02 Score=28.23 Aligned_cols=83 Identities=14% Similarity=0.187 Sum_probs=47.6
Q ss_pred CCCeEEEEee-CcchHHHHHHHHHcCCCceEEEEEECCHHHHhcCC-----CCCCee-ccccccccCCCCCCchhhHHHH
Q 014946 57 ETAKIKVVGV-GGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSA-----AENPLQ-IGDLLTRGLGTGGNPLLGEQAA 129 (415)
Q Consensus 57 ~~~~i~vIGv-GgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~~-----~~~ki~-ig~~~t~G~GaG~n~~~G~~~a 129 (415)
.+.+++|.|. |+-|..++.+|.+.|. +.++++.+...++... ...++. +--.+ .++ +..
T Consensus 6 ~~~~vlVtG~sg~iG~~l~~~L~~~G~---~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~-------~~~----~~~ 71 (239)
T PRK07666 6 QGKNALITGAGRGIGRAVAIALAKEGV---NVGLLARTEENLKAVAEEVEAYGVKVVIATADV-------SDY----EEV 71 (239)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHHHhCCeEEEEECCC-------CCH----HHH
Confidence 3467888884 4678889999988774 4667777665544321 011111 00000 112 233
Q ss_pred HHHHHHHHHHhcCCCEEEEeccCC
Q 014946 130 EESKEVIANALKGSDLVFITAGMG 153 (415)
Q Consensus 130 ee~~e~I~~~le~~D~~~I~agLG 153 (415)
++..+++.+.+..+|+++.++|..
T Consensus 72 ~~~~~~~~~~~~~id~vi~~ag~~ 95 (239)
T PRK07666 72 TAAIEQLKNELGSIDILINNAGIS 95 (239)
T ss_pred HHHHHHHHHHcCCccEEEEcCccc
Confidence 445555666667899988887653
No 376
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=42.59 E-value=96 Score=25.44 Aligned_cols=64 Identities=13% Similarity=0.219 Sum_probs=40.8
Q ss_pred CCccCChHHHHHHHHHHhCCceEEEEecCCCCc-hhhhHHHHHHHHHHHHhhC-CEEEEEeCchhh
Q 014946 154 GGTGSGAAPVVAQIAKEAGYLTVGVVTYPFSFE-GRKRSSQALEAIERLQKNV-DTLIVIPNDRLL 217 (415)
Q Consensus 154 GGTGSG~apvia~~ake~g~~tvavvtlP~~~E-g~~r~~nA~~~l~~L~e~~-D~viv~dNd~L~ 217 (415)
|-.|+|=+.++..+++..+...+.+-......+ ......+....+++..+.. .+++++||=...
T Consensus 5 G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l 70 (132)
T PF00004_consen 5 GPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKL 70 (132)
T ss_dssp SSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGT
T ss_pred CcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhc
Confidence 678999888888888888876655432222111 1122334556666776676 899999985433
No 377
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=42.36 E-value=19 Score=30.99 Aligned_cols=80 Identities=20% Similarity=0.150 Sum_probs=46.5
Q ss_pred HHHHHHhcCCCEEEEeccCCCCccCChHHHHHHHHHHhCCceEEEEec----CCCCchhh--hHHHHHHHHHHHHhhCCE
Q 014946 134 EVIANALKGSDLVFITAGMGGGTGSGAAPVVAQIAKEAGYLTVGVVTY----PFSFEGRK--RSSQALEAIERLQKNVDT 207 (415)
Q Consensus 134 e~I~~~le~~D~~~I~agLGGGTGSG~apvia~~ake~g~~tvavvtl----P~~~Eg~~--r~~nA~~~l~~L~e~~D~ 207 (415)
+++.++|.++.--+|+.|-|.. -+|+.+.+.++++..+++++.-... |.....-. -.........++.+.+|.
T Consensus 2 ~~~~~~L~~A~rP~il~G~g~~-~~~a~~~l~~lae~~~~Pv~~t~~~kg~i~~~hp~~~G~~g~~~~~~~~~~l~~aDl 80 (137)
T PF00205_consen 2 DEAADLLSSAKRPVILAGRGAR-RSGAAEELRELAEKLGIPVATTPMGKGVIPEDHPLFLGYLGLFGSPAANEALEQADL 80 (137)
T ss_dssp HHHHHHHHH-SSEEEEE-HHHH-HTTCHHHHHHHHHHHTSEEEEEGGGTTSSTTTSTTEEEESCGGSCHHHHHHHHHSSE
T ss_pred HHHHHHHHhCCCEEEEEcCCcC-hhhHHHHHHHHHHHHCCCEEecCccccccCCCCchhcccCCccCCHHHHHHhcCCCE
Confidence 5677777777754455443322 2478899999999999987654322 22111000 000112344566689999
Q ss_pred EEEEeCc
Q 014946 208 LIVIPND 214 (415)
Q Consensus 208 viv~dNd 214 (415)
+|++-..
T Consensus 81 vl~iG~~ 87 (137)
T PF00205_consen 81 VLAIGTR 87 (137)
T ss_dssp EEEESSS
T ss_pred EEEECCC
Confidence 9999755
No 378
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=42.20 E-value=1.8e+02 Score=27.36 Aligned_cols=83 Identities=17% Similarity=0.232 Sum_probs=48.6
Q ss_pred CCCeEEEEee-CcchHHHHHHHHHcCCCceEEEEEECCHHHHhcCCCC--CCee-ccccccccCCCCCCchhhHHHHHHH
Q 014946 57 ETAKIKVVGV-GGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSAAE--NPLQ-IGDLLTRGLGTGGNPLLGEQAAEES 132 (415)
Q Consensus 57 ~~~~i~vIGv-GgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~~~~--~ki~-ig~~~t~G~GaG~n~~~G~~~aee~ 132 (415)
.+.++.|.|. ||-|..++.+|.+.|. +.+.++-+...++.+... .++. +--.+ .+ .+..++.
T Consensus 4 ~~k~vlItGas~gIG~~ia~~l~~~G~---~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~-------~~----~~~~~~~ 69 (262)
T TIGR03325 4 KGEVVLVTGGASGLGRAIVDRFVAEGA---RVAVLDKSAAGLQELEAAHGDAVVGVEGDV-------RS----LDDHKEA 69 (262)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHhhcCCceEEEEecc-------CC----HHHHHHH
Confidence 4567888887 5679999999999874 455666655555433211 1111 10000 11 1233444
Q ss_pred HHHHHHHhcCCCEEEEeccCC
Q 014946 133 KEVIANALKGSDLVFITAGMG 153 (415)
Q Consensus 133 ~e~I~~~le~~D~~~I~agLG 153 (415)
.+++.+.+...|.++-.+|+.
T Consensus 70 ~~~~~~~~g~id~li~~Ag~~ 90 (262)
T TIGR03325 70 VARCVAAFGKIDCLIPNAGIW 90 (262)
T ss_pred HHHHHHHhCCCCEEEECCCCC
Confidence 555666667889998888764
No 379
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=42.14 E-value=2e+02 Score=26.22 Aligned_cols=27 Identities=26% Similarity=0.385 Sum_probs=22.2
Q ss_pred CCCCeEEEEee-CcchHHHHHHHHHcCC
Q 014946 56 METAKIKVVGV-GGGGNNAVNRMIGSGL 82 (415)
Q Consensus 56 ~~~~~i~vIGv-GgaG~niv~~l~~~~~ 82 (415)
+.+.+++|.|. |+-|..++.+|.+.|.
T Consensus 3 ~~~~~vlItG~sg~iG~~l~~~l~~~G~ 30 (248)
T PRK05557 3 LEGKVALVTGASRGIGRAIAERLAAQGA 30 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC
Confidence 45578999986 7889999999998874
No 380
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=42.00 E-value=44 Score=33.26 Aligned_cols=90 Identities=20% Similarity=0.364 Sum_probs=49.6
Q ss_pred CCeEEEEeeCcchHHHHHHHHHcCCCceEEEEE-ECCHH--HHhcCCCCCCeeccccccccCCCCCCchhhHHHHHHHHH
Q 014946 58 TAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAI-NTDSQ--ALLQSAAENPLQIGDLLTRGLGTGGNPLLGEQAAEESKE 134 (415)
Q Consensus 58 ~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iai-nTD~~--~L~~~~~~~ki~ig~~~t~G~GaG~n~~~G~~~aee~~e 134 (415)
++||.|||.|..|...+..+.+. ++++..++ +-|.+ .+.... + +|... . ..+.+
T Consensus 1 klrVAIIG~G~IG~~h~~~ll~~--~~~elvaV~d~d~es~~la~A~---~----------~Gi~~-~-------~~~~e 57 (285)
T TIGR03215 1 KVKVAIIGSGNIGTDLMYKLLRS--EHLEMVAMVGIDPESDGLARAR---E----------LGVKT-S-------AEGVD 57 (285)
T ss_pred CcEEEEEeCcHHHHHHHHHHHhC--CCcEEEEEEeCCcccHHHHHHH---H----------CCCCE-E-------ECCHH
Confidence 37899999999999887777763 34555443 44443 232110 0 11100 0 01112
Q ss_pred HHHHHhcCCCEEEEeccCCCCccCChHHHHHHHHHHhCCceEE
Q 014946 135 VIANALKGSDLVFITAGMGGGTGSGAAPVVAQIAKEAGYLTVG 177 (415)
Q Consensus 135 ~I~~~le~~D~~~I~agLGGGTGSG~apvia~~ake~g~~tva 177 (415)
.+.+ -++.|++|++. ++..-...+..+.+.|+.++.
T Consensus 58 ~ll~-~~dIDaV~iaT------p~~~H~e~a~~al~aGk~VId 93 (285)
T TIGR03215 58 GLLA-NPDIDIVFDAT------SAKAHARHARLLAELGKIVID 93 (285)
T ss_pred HHhc-CCCCCEEEECC------CcHHHHHHHHHHHHcCCEEEE
Confidence 2111 14689999974 444555567777788887654
No 381
>PLN02206 UDP-glucuronate decarboxylase
Probab=41.65 E-value=51 Score=34.68 Aligned_cols=33 Identities=21% Similarity=0.401 Sum_probs=26.8
Q ss_pred CCCeEEEEee-CcchHHHHHHHHHcCCCceEEEEEEC
Q 014946 57 ETAKIKVVGV-GGGGNNAVNRMIGSGLQGVDFYAINT 92 (415)
Q Consensus 57 ~~~~i~vIGv-GgaG~niv~~l~~~~~~~v~~iainT 92 (415)
..|||+|.|. |-.|.+++.+|.+.|. +.++++.
T Consensus 118 ~~~kILVTGatGfIGs~Lv~~Ll~~G~---~V~~ld~ 151 (442)
T PLN02206 118 KGLRVVVTGGAGFVGSHLVDRLMARGD---SVIVVDN 151 (442)
T ss_pred CCCEEEEECcccHHHHHHHHHHHHCcC---EEEEEeC
Confidence 4689999996 9999999999999874 3556653
No 382
>PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase
Probab=41.65 E-value=2.2e+02 Score=30.33 Aligned_cols=42 Identities=17% Similarity=0.191 Sum_probs=32.1
Q ss_pred CCeEEEEee-CcchHHHHHHHHHcC-CCceEEEEEECCHHHHhc
Q 014946 58 TAKIKVVGV-GGGGNNAVNRMIGSG-LQGVDFYAINTDSQALLQ 99 (415)
Q Consensus 58 ~~~i~vIGv-GgaG~niv~~l~~~~-~~~v~~iainTD~~~L~~ 99 (415)
..||.|+|. |..|.+.+|=+.++. --.+..++.+++.+.|..
T Consensus 57 ~KkI~ILGSTGSIGtqtLdVI~~~pd~f~vvaLaag~Ni~lL~~ 100 (454)
T PLN02696 57 PKPISLLGSTGSIGTQTLDIVAENPDKFKVVALAAGSNVTLLAD 100 (454)
T ss_pred ccEEEEecCCcHhhHHHHHHHHhCccccEEEEEECCCCHHHHHH
Confidence 368999999 999999999887652 112667788888877654
No 383
>PRK12320 hypothetical protein; Provisional
Probab=41.63 E-value=1.1e+02 Score=34.32 Aligned_cols=31 Identities=23% Similarity=0.380 Sum_probs=25.2
Q ss_pred CeEEEEe-eCcchHHHHHHHHHcCCCceEEEEEEC
Q 014946 59 AKIKVVG-VGGGGNNAVNRMIGSGLQGVDFYAINT 92 (415)
Q Consensus 59 ~~i~vIG-vGgaG~niv~~l~~~~~~~v~~iainT 92 (415)
|||+|.| -|..|.+++++|++.|. +.++++-
T Consensus 1 MkILVTGAaGFIGs~La~~Ll~~G~---~Vi~ldr 32 (699)
T PRK12320 1 MQILVTDATGAVGRSVTRQLIAAGH---TVSGIAQ 32 (699)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC---EEEEEeC
Confidence 6899999 69999999999998874 4555654
No 384
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=41.60 E-value=19 Score=40.19 Aligned_cols=43 Identities=16% Similarity=0.281 Sum_probs=32.6
Q ss_pred CCCCCCeEEEEeeCcchHHHHHHHH-HcCCCceEEEEEECCHHHHhc
Q 014946 54 APMETAKIKVVGVGGGGNNAVNRMI-GSGLQGVDFYAINTDSQALLQ 99 (415)
Q Consensus 54 ~~~~~~~i~vIGvGgaG~niv~~l~-~~~~~~v~~iainTD~~~L~~ 99 (415)
.+..-.||.|||-|.-|..|+-.+. ..|+ +.+.+|.|.+.|++
T Consensus 300 ~~~~i~~v~ViGaG~mG~~iA~~~a~~~G~---~V~l~d~~~~~l~~ 343 (699)
T TIGR02440 300 TPAKIKKVGILGGGLMGGGIASVTATKAGI---PVRIKDINPQGINN 343 (699)
T ss_pred CcccccEEEEECCcHHHHHHHHHHHHHcCC---eEEEEeCCHHHHHH
Confidence 3344467999999999999998876 4675 46678888877654
No 385
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=41.46 E-value=44 Score=31.36 Aligned_cols=37 Identities=24% Similarity=0.310 Sum_probs=28.0
Q ss_pred CeEEEEe-eCcchHHHHHHHHHcCCCceEEEEEECCHHHHh
Q 014946 59 AKIKVVG-VGGGGNNAVNRMIGSGLQGVDFYAINTDSQALL 98 (415)
Q Consensus 59 ~~i~vIG-vGgaG~niv~~l~~~~~~~v~~iainTD~~~L~ 98 (415)
|||.||| .|..|..++..|.+.|. .+ +..+-+.+.++
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~-~V--~v~~r~~~~~~ 38 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGN-KI--IIGSRDLEKAE 38 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCC-EE--EEEEcCHHHHH
Confidence 6899997 89999999999998873 34 34465655543
No 386
>PRK08703 short chain dehydrogenase; Provisional
Probab=41.12 E-value=2.2e+02 Score=26.28 Aligned_cols=85 Identities=20% Similarity=0.210 Sum_probs=48.4
Q ss_pred CCCCeEEEEee-CcchHHHHHHHHHcCCCceEEEEEECCHHHHhcCC-------CCCCeeccccccccCCCCCCchh-hH
Q 014946 56 METAKIKVVGV-GGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSA-------AENPLQIGDLLTRGLGTGGNPLL-GE 126 (415)
Q Consensus 56 ~~~~~i~vIGv-GgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~~-------~~~ki~ig~~~t~G~GaG~n~~~-G~ 126 (415)
+...++.|.|. |+.|..++..|.+.|. +.++++-+...++... ......+.- |... -.
T Consensus 4 l~~k~vlItG~sggiG~~la~~l~~~g~---~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~----------D~~~~~~ 70 (239)
T PRK08703 4 LSDKTILVTGASQGLGEQVAKAYAAAGA---TVILVARHQKKLEKVYDAIVEAGHPEPFAIRF----------DLMSAEE 70 (239)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHcCC---EEEEEeCChHHHHHHHHHHHHcCCCCcceEEe----------eecccch
Confidence 34567899986 7889999999998774 4566665555443321 000011100 1100 01
Q ss_pred HHHHHHHHHHHHHh-cCCCEEEEeccCC
Q 014946 127 QAAEESKEVIANAL-KGSDLVFITAGMG 153 (415)
Q Consensus 127 ~~aee~~e~I~~~l-e~~D~~~I~agLG 153 (415)
+..+...+++.+.+ ...|.++-++|..
T Consensus 71 ~~~~~~~~~i~~~~~~~id~vi~~ag~~ 98 (239)
T PRK08703 71 KEFEQFAATIAEATQGKLDGIVHCAGYF 98 (239)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEecccc
Confidence 23344556666666 5689988888653
No 387
>PLN02712 arogenate dehydrogenase
Probab=41.06 E-value=41 Score=37.49 Aligned_cols=39 Identities=23% Similarity=0.300 Sum_probs=30.8
Q ss_pred CCCCCCCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCH
Q 014946 53 FAPMETAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDS 94 (415)
Q Consensus 53 ~~~~~~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~ 94 (415)
.+...+++|.|||+|..|..++.+|.+.|. +.+++|.+.
T Consensus 364 ~~~~~~~kIgIIGlG~mG~slA~~L~~~G~---~V~~~dr~~ 402 (667)
T PLN02712 364 VNDGSKLKIAIVGFGNFGQFLAKTMVKQGH---TVLAYSRSD 402 (667)
T ss_pred cCCCCCCEEEEEecCHHHHHHHHHHHHCcC---EEEEEECCh
Confidence 344577999999999999999999988763 456667653
No 388
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=40.53 E-value=86 Score=29.30 Aligned_cols=35 Identities=14% Similarity=0.316 Sum_probs=27.5
Q ss_pred CCCCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECC
Q 014946 56 METAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTD 93 (415)
Q Consensus 56 ~~~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD 93 (415)
..+.+++|||-|..|...+..|.+.|. +...++-+
T Consensus 8 l~~k~vLVIGgG~va~~ka~~Ll~~ga---~V~VIs~~ 42 (202)
T PRK06718 8 LSNKRVVIVGGGKVAGRRAITLLKYGA---HIVVISPE 42 (202)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC---eEEEEcCC
Confidence 457799999999999999999999884 33444443
No 389
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=40.44 E-value=1.1e+02 Score=29.18 Aligned_cols=84 Identities=13% Similarity=0.170 Sum_probs=47.9
Q ss_pred CCCCeEEEEee-CcchHHHHHHHHHcCCCceEEEEEECCHHHHhcCCC-----CCCeeccccccccCCCCCCchhhHHHH
Q 014946 56 METAKIKVVGV-GGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSAA-----ENPLQIGDLLTRGLGTGGNPLLGEQAA 129 (415)
Q Consensus 56 ~~~~~i~vIGv-GgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~~~-----~~ki~ig~~~t~G~GaG~n~~~G~~~a 129 (415)
+....+.|.|. |+.|..++.+|.+.|. +.+.++-+...++.... ..++..=. .|... .+..
T Consensus 8 ~~~k~vlVtGas~giG~~ia~~l~~~G~---~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~---------~Dl~~-~~~v 74 (278)
T PRK08277 8 LKGKVAVITGGGGVLGGAMAKELARAGA---KVAILDRNQEKAEAVVAEIKAAGGEALAVK---------ADVLD-KESL 74 (278)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHHhcCCeEEEEE---------CCCCC-HHHH
Confidence 34567888887 7889999999998875 45566665544432210 11111000 01111 1233
Q ss_pred HHHHHHHHHHhcCCCEEEEeccC
Q 014946 130 EESKEVIANALKGSDLVFITAGM 152 (415)
Q Consensus 130 ee~~e~I~~~le~~D~~~I~agL 152 (415)
+...+++.+.+..+|.++-.+|.
T Consensus 75 ~~~~~~~~~~~g~id~li~~ag~ 97 (278)
T PRK08277 75 EQARQQILEDFGPCDILINGAGG 97 (278)
T ss_pred HHHHHHHHHHcCCCCEEEECCCC
Confidence 44455666666789998887764
No 390
>PRK06436 glycerate dehydrogenase; Provisional
Probab=40.32 E-value=35 Score=34.12 Aligned_cols=37 Identities=19% Similarity=0.347 Sum_probs=29.1
Q ss_pred CCCCCCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECC
Q 014946 54 APMETAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTD 93 (415)
Q Consensus 54 ~~~~~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD 93 (415)
....+.++.|||.|..|..++.++...|. +.+++|..
T Consensus 118 ~~L~gktvgIiG~G~IG~~vA~~l~afG~---~V~~~~r~ 154 (303)
T PRK06436 118 KLLYNKSLGILGYGGIGRRVALLAKAFGM---NIYAYTRS 154 (303)
T ss_pred CCCCCCEEEEECcCHHHHHHHHHHHHCCC---EEEEECCC
Confidence 35678999999999999999987766664 56777743
No 391
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=40.31 E-value=69 Score=33.59 Aligned_cols=33 Identities=30% Similarity=0.507 Sum_probs=27.0
Q ss_pred CCCeEEEEee-CcchHHHHHHHHHcCCCceEEEEEEC
Q 014946 57 ETAKIKVVGV-GGGGNNAVNRMIGSGLQGVDFYAINT 92 (415)
Q Consensus 57 ~~~~i~vIGv-GgaG~niv~~l~~~~~~~v~~iainT 92 (415)
..|||+|.|- |-.|.++|.+|.+.|. +.++++.
T Consensus 119 ~~mkILVTGatGFIGs~Lv~~Ll~~G~---~V~~ldr 152 (436)
T PLN02166 119 KRLRIVVTGGAGFVGSHLVDKLIGRGD---EVIVIDN 152 (436)
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCC---EEEEEeC
Confidence 4689999996 8899999999999863 4667764
No 392
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=40.21 E-value=40 Score=36.01 Aligned_cols=38 Identities=21% Similarity=0.259 Sum_probs=31.2
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHhc
Q 014946 59 AKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQ 99 (415)
Q Consensus 59 ~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~~ 99 (415)
+||.|||.|--|..++..|...|. +..+.|-+.+.++.
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~---~V~v~D~~~~~~~~ 42 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGI---DVAVFDPHPEAERI 42 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC---eEEEEeCCHHHHHH
Confidence 589999999999999999999885 45677877766543
No 393
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=40.18 E-value=49 Score=34.90 Aligned_cols=33 Identities=21% Similarity=0.471 Sum_probs=26.4
Q ss_pred CCCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEEC
Q 014946 57 ETAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINT 92 (415)
Q Consensus 57 ~~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainT 92 (415)
....+.|||-|.||+-++-.|.+.|+. .+.++-
T Consensus 38 ~~~DViIVGaGPAG~~aA~~LA~~G~~---VlllEr 70 (450)
T PLN00093 38 RKLRVAVIGGGPAGACAAETLAKGGIE---TFLIER 70 (450)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCc---EEEEec
Confidence 346799999999999999999888764 555553
No 394
>PRK05650 short chain dehydrogenase; Provisional
Probab=40.12 E-value=1.1e+02 Score=28.93 Aligned_cols=82 Identities=11% Similarity=0.106 Sum_probs=46.8
Q ss_pred CeEEEEee-CcchHHHHHHHHHcCCCceEEEEEECCHHHHhcC----CC-CCCeeccccccccCCCCCCchhhHHHHHHH
Q 014946 59 AKIKVVGV-GGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQS----AA-ENPLQIGDLLTRGLGTGGNPLLGEQAAEES 132 (415)
Q Consensus 59 ~~i~vIGv-GgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~----~~-~~ki~ig~~~t~G~GaG~n~~~G~~~aee~ 132 (415)
++++|.|. |+.|..++..|.+.|. +.++++-+...++.. .. ..++..=. .|..- .+..++.
T Consensus 1 ~~vlVtGasggIG~~la~~l~~~g~---~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~---------~D~~~-~~~~~~~ 67 (270)
T PRK05650 1 NRVMITGAASGLGRAIALRWAREGW---RLALADVNEEGGEETLKLLREAGGDGFYQR---------CDVRD-YSQLTAL 67 (270)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHHhcCCceEEEE---------ccCCC-HHHHHHH
Confidence 36788885 7889999999998874 455666555544321 11 11211100 01110 1233455
Q ss_pred HHHHHHHhcCCCEEEEeccCC
Q 014946 133 KEVIANALKGSDLVFITAGMG 153 (415)
Q Consensus 133 ~e~I~~~le~~D~~~I~agLG 153 (415)
.+.+.+.....|.++-.+|..
T Consensus 68 ~~~i~~~~~~id~lI~~ag~~ 88 (270)
T PRK05650 68 AQACEEKWGGIDVIVNNAGVA 88 (270)
T ss_pred HHHHHHHcCCCCEEEECCCCC
Confidence 566666677889888877654
No 395
>PRK09186 flagellin modification protein A; Provisional
Probab=40.11 E-value=2.4e+02 Score=26.09 Aligned_cols=38 Identities=26% Similarity=0.337 Sum_probs=27.9
Q ss_pred CCCeEEEEee-CcchHHHHHHHHHcCCCceEEEEEECCHHHH
Q 014946 57 ETAKIKVVGV-GGGGNNAVNRMIGSGLQGVDFYAINTDSQAL 97 (415)
Q Consensus 57 ~~~~i~vIGv-GgaG~niv~~l~~~~~~~v~~iainTD~~~L 97 (415)
.+.++.|.|. |+.|..++..|.+.|. +.+.++.+...+
T Consensus 3 ~~k~vlItGas~giG~~~a~~l~~~g~---~v~~~~r~~~~~ 41 (256)
T PRK09186 3 KGKTILITGAGGLIGSALVKAILEAGG---IVIAADIDKEAL 41 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEecChHHH
Confidence 3567899997 7899999999998874 455555554443
No 396
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=40.11 E-value=1e+02 Score=34.12 Aligned_cols=86 Identities=20% Similarity=0.350 Sum_probs=49.2
Q ss_pred cccCCCCCCCeEEEEee-CcchHHHHHHHHHcCCCceEEEEEECCHHHHhcCCCCCCeeccccccccCCCCCCchhhHHH
Q 014946 50 SCSFAPMETAKIKVVGV-GGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSAAENPLQIGDLLTRGLGTGGNPLLGEQA 128 (415)
Q Consensus 50 ~~~~~~~~~~~i~vIGv-GgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~~~~~ki~ig~~~t~G~GaG~n~~~G~~~ 128 (415)
.||+- ..++|+|.|. |-.|..++.+|++.+ +.+.++++-+...+.......++.+ ..| |..
T Consensus 309 ~~~~~--~~~~VLVTGatGFIGs~Lv~~Ll~~~--g~~V~~l~r~~~~~~~~~~~~~~~~----~~g-----Dl~----- 370 (660)
T PRK08125 309 ACSAK--RRTRVLILGVNGFIGNHLTERLLRDD--NYEVYGLDIGSDAISRFLGHPRFHF----VEG-----DIS----- 370 (660)
T ss_pred hhhhh--cCCEEEEECCCchHHHHHHHHHHhCC--CcEEEEEeCCchhhhhhcCCCceEE----Eec-----ccc-----
Confidence 35543 4578999995 999999999999863 2456666654433221111111211 010 110
Q ss_pred HHHHHHHHHHHhcCCCEEEEeccCCCC
Q 014946 129 AEESKEVIANALKGSDLVFITAGMGGG 155 (415)
Q Consensus 129 aee~~e~I~~~le~~D~~~I~agLGGG 155 (415)
+ ..+.+.++++++|.||=+|+..+.
T Consensus 371 -d-~~~~l~~~l~~~D~ViHlAa~~~~ 395 (660)
T PRK08125 371 -I-HSEWIEYHIKKCDVVLPLVAIATP 395 (660)
T ss_pred -C-cHHHHHHHhcCCCEEEECccccCc
Confidence 0 112245667789999888887654
No 397
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=40.00 E-value=2e+02 Score=26.64 Aligned_cols=80 Identities=15% Similarity=0.160 Sum_probs=45.9
Q ss_pred CCCCeEEEEee-CcchHHHHHHHHHcCCCceEEEEEECCHHHHhcCCCCCCeeccccccccCCCCCCchhhHHHHHHHHH
Q 014946 56 METAKIKVVGV-GGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSAAENPLQIGDLLTRGLGTGGNPLLGEQAAEESKE 134 (415)
Q Consensus 56 ~~~~~i~vIGv-GgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~~~~~ki~ig~~~t~G~GaG~n~~~G~~~aee~~e 134 (415)
+...++.|.|. |+-|..++.+|.+.|. +.++++.+. +... ..++..=+ .|.. -.+..++..+
T Consensus 6 ~~~k~vlItGas~~iG~~la~~l~~~G~---~v~~~~~~~--~~~~--~~~~~~~~---------~D~~-~~~~~~~~~~ 68 (252)
T PRK08220 6 FSGKTVWVTGAAQGIGYAVALAFVEAGA---KVIGFDQAF--LTQE--DYPFATFV---------LDVS-DAAAVAQVCQ 68 (252)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC---EEEEEecch--hhhc--CCceEEEE---------ecCC-CHHHHHHHHH
Confidence 34567999987 5789999999998874 455665554 2111 11111100 0111 1223444556
Q ss_pred HHHHHhcCCCEEEEeccC
Q 014946 135 VIANALKGSDLVFITAGM 152 (415)
Q Consensus 135 ~I~~~le~~D~~~I~agL 152 (415)
++.+.....|.++-.+|.
T Consensus 69 ~~~~~~~~id~vi~~ag~ 86 (252)
T PRK08220 69 RLLAETGPLDVLVNAAGI 86 (252)
T ss_pred HHHHHcCCCCEEEECCCc
Confidence 666666778988776653
No 398
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=39.97 E-value=35 Score=36.16 Aligned_cols=37 Identities=19% Similarity=0.339 Sum_probs=31.1
Q ss_pred CCCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHH
Q 014946 57 ETAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQA 96 (415)
Q Consensus 57 ~~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~ 96 (415)
..+||.|+|.|.-|..++..|.+.| +...+.|++...
T Consensus 6 ~~~kv~V~GLG~sG~a~a~~L~~~G---~~v~v~D~~~~~ 42 (448)
T COG0771 6 QGKKVLVLGLGKSGLAAARFLLKLG---AEVTVSDDRPAP 42 (448)
T ss_pred cCCEEEEEecccccHHHHHHHHHCC---CeEEEEcCCCCc
Confidence 3789999999999999999999988 457788875444
No 399
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=39.92 E-value=1.5e+02 Score=29.87 Aligned_cols=35 Identities=17% Similarity=0.246 Sum_probs=23.5
Q ss_pred CeEEEEeeCc-chHHHHHHHHHcCCCceEEEEEECC
Q 014946 59 AKIKVVGVGG-GGNNAVNRMIGSGLQGVDFYAINTD 93 (415)
Q Consensus 59 ~~i~vIGvGg-aG~niv~~l~~~~~~~v~~iainTD 93 (415)
+||.|||--| .|..++..|.+++.+..+..++-.+
T Consensus 2 ~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~ 37 (334)
T PRK14874 2 YNVAVVGATGAVGREMLNILEERNFPVDKLRLLASA 37 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEcc
Confidence 6899999755 5666676666766665566666544
No 400
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=39.91 E-value=68 Score=34.44 Aligned_cols=139 Identities=21% Similarity=0.314 Sum_probs=69.8
Q ss_pred HHHHHHhc-CCCEEEEeccCCCCccCChHHHHHHHHHHhC--CceEEEEecCCC--------------------Cchhhh
Q 014946 134 EVIANALK-GSDLVFITAGMGGGTGSGAAPVVAQIAKEAG--YLTVGVVTYPFS--------------------FEGRKR 190 (415)
Q Consensus 134 e~I~~~le-~~D~~~I~agLGGGTGSG~apvia~~ake~g--~~tvavvtlP~~--------------------~Eg~~r 190 (415)
.+|.+++. ..|.||+..| ||||=+|.+- .+|+.. ..+++|-+.-.. .+|..-
T Consensus 157 ~EI~~q~~~~~D~vvvpvG-gGGliaGia~----~lk~~~p~~kVIgVep~~~~~~~~s~~~g~~~~~~~~~t~adgiav 231 (499)
T TIGR01124 157 LEILRQVANPLDAVFVPVG-GGGLAAGVAA----LIKQLMPEIKVIGVEPTDSDCMKQALDAGEPVDLDQVGLFADGVAV 231 (499)
T ss_pred HHHHHhCCCCCCEEEEccC-ccHHHHHHHH----HHHHhCCCCEEEEEEECCChHHHHHHhcCCceeCCCCCCccCcccC
Confidence 33444454 5788877766 4566566554 345443 456766552110 012100
Q ss_pred HHHHHHHHHHHHhhCCEEEEEeCchhhhhcc---ccCC--hHH----HHhhhhhhhhcc-ccccccccccCceeeechhh
Q 014946 191 SSQALEAIERLQKNVDTLIVIPNDRLLDITD---EQTA--LQD----AFLLADDVLRQG-VQGISDIITIPGLVNVDFAD 260 (415)
Q Consensus 191 ~~nA~~~l~~L~e~~D~viv~dNd~L~~~~~---~~~~--i~~----af~~~N~~i~~~-i~~It~~i~~~G~invD~~d 260 (415)
..-....++-+++++|.++.++.+.+..... +... +++ ++.-+-+...+. +.+-.-..-.+| -|+|+..
T Consensus 232 ~~~g~~~~~~~~~~vd~vv~V~d~ei~~ai~~l~~~~gii~EpagA~~lAal~~~~~~~~~~~~~vv~i~sG-~n~~~~~ 310 (499)
T TIGR01124 232 KRVGDETFRLCQQYLDDIVTVDTDEVCAAIKDLFEDTRAVAEPAGALALAGLKKYVALHGIRGQTLVAILSG-ANMNFHR 310 (499)
T ss_pred CCccHHHHHHHHHhCCEEEEECHHHHHHHHHHHHHhcCcEEechHHHHHHHHHHhhhhcCCCCCeEEEEECC-CCCCHHH
Confidence 0012356777789999999999988766442 1111 111 222222222111 111111122344 5888888
Q ss_pred hhhhccC-----CCeeEEEeeec
Q 014946 261 VKAVMKD-----SGTAMLGVGVS 278 (415)
Q Consensus 261 i~t~L~~-----~g~~~ig~G~a 278 (415)
+..++.- +..+++.+-+-
T Consensus 311 l~~~~~r~~~~~~re~~l~V~iP 333 (499)
T TIGR01124 311 LRYVSERCELGEQREALLAVTIP 333 (499)
T ss_pred HHHHHHHHHHhcCCEEEEEEEeC
Confidence 7775543 35666666553
No 401
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=39.89 E-value=86 Score=33.04 Aligned_cols=49 Identities=22% Similarity=0.269 Sum_probs=32.9
Q ss_pred HHHHHHHh--cCCCEEEEeccCCCCccCChHHHHHHHHHHhCCceEEEEecCC
Q 014946 133 KEVIANAL--KGSDLVFITAGMGGGTGSGAAPVVAQIAKEAGYLTVGVVTYPF 183 (415)
Q Consensus 133 ~e~I~~~l--e~~D~~~I~agLGGGTGSG~apvia~~ake~g~~tvavvtlP~ 183 (415)
-++|.+.| ++.|+++++..-|=-|=+ +..+++...+.|++++-+.+++-
T Consensus 325 g~eIa~~Lk~dgVDAvILtstCgtCtrc--ga~m~keiE~~GIPvV~i~~~~p 375 (431)
T TIGR01917 325 AKEFSKELLAAGVDAVILTSTUGTCTRC--GATMVKEIERAGIPVVHICTVTP 375 (431)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCCcchhH--HHHHHHHHHHcCCCEEEEeechh
Confidence 33444444 479999999776644444 44577778888998887766544
No 402
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=39.79 E-value=30 Score=34.54 Aligned_cols=30 Identities=30% Similarity=0.434 Sum_probs=25.3
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCceEEEE
Q 014946 59 AKIKVVGVGGGGNNAVNRMIGSGLQGVDFYA 89 (415)
Q Consensus 59 ~~i~vIGvGgaG~niv~~l~~~~~~~v~~ia 89 (415)
|||.|||.|.-|+-++-.|.+.|. +|.++.
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~-~V~~~~ 32 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGA-DVTLIG 32 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCC-cEEEEe
Confidence 789999999999999999999884 355543
No 403
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=39.79 E-value=28 Score=35.38 Aligned_cols=33 Identities=18% Similarity=0.438 Sum_probs=29.0
Q ss_pred cccCCCCCCCeEEEEeeCcchHHHHHHHHHcCC
Q 014946 50 SCSFAPMETAKIKVVGVGGGGNNAVNRMIGSGL 82 (415)
Q Consensus 50 ~~~~~~~~~~~i~vIGvGgaG~niv~~l~~~~~ 82 (415)
+++.......+|.|||.|-.|..++..|...|.
T Consensus 9 d~~~~~L~gktIgIIG~GsmG~AlA~~L~~sG~ 41 (330)
T PRK05479 9 DADLSLIKGKKVAIIGYGSQGHAHALNLRDSGV 41 (330)
T ss_pred CCChhhhCCCEEEEEeeHHHHHHHHHHHHHCCC
Confidence 466677778899999999999999999998885
No 404
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=39.64 E-value=61 Score=32.94 Aligned_cols=36 Identities=17% Similarity=0.329 Sum_probs=27.8
Q ss_pred CCCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHH
Q 014946 57 ETAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQ 95 (415)
Q Consensus 57 ~~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~ 95 (415)
.+++|+|||-|+-|-.++..+.+.| .++++++.+..
T Consensus 11 ~~~~ilIiG~g~~~~~~~~a~~~~G---~~v~~~~~~~~ 46 (395)
T PRK09288 11 SATRVMLLGSGELGKEVAIEAQRLG---VEVIAVDRYAN 46 (395)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC---CEEEEEeCCCC
Confidence 4679999999988888887777765 45778887664
No 405
>PRK09072 short chain dehydrogenase; Provisional
Probab=39.59 E-value=1.3e+02 Score=28.20 Aligned_cols=39 Identities=15% Similarity=0.399 Sum_probs=29.3
Q ss_pred CCCeEEEEee-CcchHHHHHHHHHcCCCceEEEEEECCHHHHh
Q 014946 57 ETAKIKVVGV-GGGGNNAVNRMIGSGLQGVDFYAINTDSQALL 98 (415)
Q Consensus 57 ~~~~i~vIGv-GgaG~niv~~l~~~~~~~v~~iainTD~~~L~ 98 (415)
.+.+++|.|. |+-|..++.+|.+.|. +.++++-+...+.
T Consensus 4 ~~~~vlItG~s~~iG~~ia~~l~~~G~---~V~~~~r~~~~~~ 43 (263)
T PRK09072 4 KDKRVLLTGASGGIGQALAEALAAAGA---RLLLVGRNAEKLE 43 (263)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEECCHHHHH
Confidence 4567999985 8899999999998874 4666666655543
No 406
>PRK07063 short chain dehydrogenase; Provisional
Probab=39.51 E-value=2e+02 Score=26.88 Aligned_cols=83 Identities=13% Similarity=0.124 Sum_probs=48.7
Q ss_pred CCCeEEEEee-CcchHHHHHHHHHcCCCceEEEEEECCHHHHhcCC----C---CCCee-ccccccccCCCCCCchhhHH
Q 014946 57 ETAKIKVVGV-GGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSA----A---ENPLQ-IGDLLTRGLGTGGNPLLGEQ 127 (415)
Q Consensus 57 ~~~~i~vIGv-GgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~~----~---~~ki~-ig~~~t~G~GaG~n~~~G~~ 127 (415)
.+.++.|.|. |+.|..++.+|.+.|. +.+.++-+...++... . ..++. +- .|... .+
T Consensus 6 ~~k~vlVtGas~gIG~~~a~~l~~~G~---~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~----------~Dl~~-~~ 71 (260)
T PRK07063 6 AGKVALVTGAAQGIGAAIARAFAREGA---AVALADLDAALAERAAAAIARDVAGARVLAVP----------ADVTD-AA 71 (260)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHHhccCCceEEEEE----------ccCCC-HH
Confidence 3566888886 5778899999998874 4566666655554321 0 11111 10 01111 23
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeccCC
Q 014946 128 AAEESKEVIANALKGSDLVFITAGMG 153 (415)
Q Consensus 128 ~aee~~e~I~~~le~~D~~~I~agLG 153 (415)
..++..+++.+.....|.++-.+|..
T Consensus 72 ~~~~~~~~~~~~~g~id~li~~ag~~ 97 (260)
T PRK07063 72 SVAAAVAAAEEAFGPLDVLVNNAGIN 97 (260)
T ss_pred HHHHHHHHHHHHhCCCcEEEECCCcC
Confidence 34455666666677899998888753
No 407
>TIGR01027 proB glutamate 5-kinase. Bacterial ProB proteins hit the full length of this model, but the ProB-like domain of delta 1-pyrroline-5-carboxylate synthetase does not hit the C-terminal 100 residues of this model. The noise cutoff is set low enough to hit delta 1-pyrroline-5-carboxylate synthetase and other partial matches to this family.
Probab=39.41 E-value=2.8e+02 Score=28.43 Aligned_cols=51 Identities=22% Similarity=0.216 Sum_probs=30.3
Q ss_pred HHHHHhCCceEEEEecCCCCchhhhHHHHHHHHHHHHhhCCEEEEEeCchh
Q 014946 166 QIAKEAGYLTVGVVTYPFSFEGRKRSSQALEAIERLQKNVDTLIVIPNDRL 216 (415)
Q Consensus 166 ~~ake~g~~tvavvtlP~~~Eg~~r~~nA~~~l~~L~e~~D~viv~dNd~L 216 (415)
+.+.++|+.+-.++..-..+..+.+..|+...+..|.+.-.--|+-.|+.+
T Consensus 85 ~~l~~~Gi~~aqillt~~d~~~~~~~lna~~~i~~Ll~~g~iPVi~end~v 135 (363)
T TIGR01027 85 QLFSQYGIKVAQILLTRADFSDRERYLNARNTLEALLELGVVPIINENDTV 135 (363)
T ss_pred HHHHHcCCeEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCEEEEeCCCce
Confidence 345556776544443333344455677999999998876443344346655
No 408
>cd03522 MoeA_like MoeA_like. This domain is similar to a domain found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. There this domain is presumed to bind molybdopterin. The exact function of this subgroup is unknown.
Probab=39.41 E-value=2e+02 Score=28.96 Aligned_cols=48 Identities=27% Similarity=0.410 Sum_probs=31.7
Q ss_pred HHHHHHHHhcC-CCEEEEeccCCCCccCChHHHHHHHHHHhCC--ceEEEEecCC
Q 014946 132 SKEVIANALKG-SDLVFITAGMGGGTGSGAAPVVAQIAKEAGY--LTVGVVTYPF 183 (415)
Q Consensus 132 ~~e~I~~~le~-~D~~~I~agLGGGTGSG~apvia~~ake~g~--~tvavvtlP~ 183 (415)
..+.|++++++ +|+++++ ||||.|---+..+..++.|. ..+++-..|-
T Consensus 208 I~~ai~~~~~~g~DlIItT----GGtsvg~~D~tp~Ai~~~G~ei~~~Gv~v~PG 258 (312)
T cd03522 208 IAAAIAEALEAGAELLILT----GGASVDPDDVTPAAIRAAGGEVIRYGMPVDPG 258 (312)
T ss_pred HHHHHHHHhcCCCCEEEEe----CCcccCCcchHHHHHHhcCceEEEeeecccCC
Confidence 34556666665 8988876 66777777777777777763 3455555554
No 409
>PRK05717 oxidoreductase; Validated
Probab=39.41 E-value=1.7e+02 Score=27.42 Aligned_cols=83 Identities=14% Similarity=0.112 Sum_probs=46.7
Q ss_pred CCeEEEEee-CcchHHHHHHHHHcCCCceEEEEEECCHHHHhcCC--CCCCee-ccccccccCCCCCCchhhHHHHHHHH
Q 014946 58 TAKIKVVGV-GGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSA--AENPLQ-IGDLLTRGLGTGGNPLLGEQAAEESK 133 (415)
Q Consensus 58 ~~~i~vIGv-GgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~~--~~~ki~-ig~~~t~G~GaG~n~~~G~~~aee~~ 133 (415)
+.+++|.|. |+.|..++.+|.+.|. +.+.++.+...+.... ...++. +.-.+ .+ .+..++..
T Consensus 10 ~k~vlItG~sg~IG~~~a~~l~~~g~---~v~~~~~~~~~~~~~~~~~~~~~~~~~~Dl-------~~----~~~~~~~~ 75 (255)
T PRK05717 10 GRVALVTGAARGIGLGIAAWLIAEGW---QVVLADLDRERGSKVAKALGENAWFIAMDV-------AD----EAQVAAGV 75 (255)
T ss_pred CCEEEEeCCcchHHHHHHHHHHHcCC---EEEEEcCCHHHHHHHHHHcCCceEEEEccC-------CC----HHHHHHHH
Confidence 467999997 7889999999998874 4556655443332210 011111 11011 01 12333445
Q ss_pred HHHHHHhcCCCEEEEeccCCC
Q 014946 134 EVIANALKGSDLVFITAGMGG 154 (415)
Q Consensus 134 e~I~~~le~~D~~~I~agLGG 154 (415)
+++.+.....|.++-++|...
T Consensus 76 ~~~~~~~g~id~li~~ag~~~ 96 (255)
T PRK05717 76 AEVLGQFGRLDALVCNAAIAD 96 (255)
T ss_pred HHHHHHhCCCCEEEECCCccc
Confidence 566666667898888886543
No 410
>PRK09135 pteridine reductase; Provisional
Probab=39.35 E-value=2.9e+02 Score=25.29 Aligned_cols=82 Identities=12% Similarity=-0.003 Sum_probs=46.3
Q ss_pred CCCeEEEEee-CcchHHHHHHHHHcCCCceEEEEEEC-CHHHHhcCC-------C-CCCeeccccccccCCCCCCchhhH
Q 014946 57 ETAKIKVVGV-GGGGNNAVNRMIGSGLQGVDFYAINT-DSQALLQSA-------A-ENPLQIGDLLTRGLGTGGNPLLGE 126 (415)
Q Consensus 57 ~~~~i~vIGv-GgaG~niv~~l~~~~~~~v~~iainT-D~~~L~~~~-------~-~~ki~ig~~~t~G~GaG~n~~~G~ 126 (415)
...+++|.|. |+-|..++.+|.+.|. +.+.++- +.+.+.... . ...+..+ |.. -.
T Consensus 5 ~~~~vlItGa~g~iG~~l~~~l~~~g~---~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-----------Dl~-~~ 69 (249)
T PRK09135 5 SAKVALITGGARRIGAAIARTLHAAGY---RVAIHYHRSAAEADALAAELNALRPGSAAALQA-----------DLL-DP 69 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC---EEEEEcCCCHHHHHHHHHHHHhhcCCceEEEEc-----------CCC-CH
Confidence 3467999996 7889999999998874 4455543 333332211 0 0011111 111 02
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeccCC
Q 014946 127 QAAEESKEVIANALKGSDLVFITAGMG 153 (415)
Q Consensus 127 ~~aee~~e~I~~~le~~D~~~I~agLG 153 (415)
+..+...+++.+.+..+|.+|-++|..
T Consensus 70 ~~~~~~~~~~~~~~~~~d~vi~~ag~~ 96 (249)
T PRK09135 70 DALPELVAACVAAFGRLDALVNNASSF 96 (249)
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 233444555666667899988887653
No 411
>PLN02686 cinnamoyl-CoA reductase
Probab=39.34 E-value=75 Score=32.21 Aligned_cols=29 Identities=28% Similarity=0.279 Sum_probs=24.4
Q ss_pred CCCCCCeEEEEee-CcchHHHHHHHHHcCC
Q 014946 54 APMETAKIKVVGV-GGGGNNAVNRMIGSGL 82 (415)
Q Consensus 54 ~~~~~~~i~vIGv-GgaG~niv~~l~~~~~ 82 (415)
..+..++|+|.|- |..|..++.+|.+.|.
T Consensus 49 ~~~~~k~VLVTGatGfIG~~lv~~L~~~G~ 78 (367)
T PLN02686 49 ADAEARLVCVTGGVSFLGLAIVDRLLRHGY 78 (367)
T ss_pred cCCCCCEEEEECCchHHHHHHHHHHHHCCC
Confidence 3455778999997 8899999999999874
No 412
>PRK08263 short chain dehydrogenase; Provisional
Probab=39.33 E-value=1.5e+02 Score=28.09 Aligned_cols=83 Identities=19% Similarity=0.118 Sum_probs=47.8
Q ss_pred CCeEEEEe-eCcchHHHHHHHHHcCCCceEEEEEECCHHHHhcCCC--CCCeeccccccccCCCCCCchhhHHHHHHHHH
Q 014946 58 TAKIKVVG-VGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSAA--ENPLQIGDLLTRGLGTGGNPLLGEQAAEESKE 134 (415)
Q Consensus 58 ~~~i~vIG-vGgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~~~--~~ki~ig~~~t~G~GaG~n~~~G~~~aee~~e 134 (415)
...++|.| -|+-|..++.+|.+.|. +.+.++-+.+.++.... ..++.+=+ .|..- .+..++..+
T Consensus 3 ~k~vlItGasg~iG~~~a~~l~~~g~---~V~~~~r~~~~~~~~~~~~~~~~~~~~---------~D~~~-~~~~~~~~~ 69 (275)
T PRK08263 3 EKVWFITGASRGFGRAWTEAALERGD---RVVATARDTATLADLAEKYGDRLLPLA---------LDVTD-RAAVFAAVE 69 (275)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC---EEEEEECCHHHHHHHHHhccCCeeEEE---------ccCCC-HHHHHHHHH
Confidence 35688888 47789999999988874 35556556655543211 11111000 01110 123344556
Q ss_pred HHHHHhcCCCEEEEeccCC
Q 014946 135 VIANALKGSDLVFITAGMG 153 (415)
Q Consensus 135 ~I~~~le~~D~~~I~agLG 153 (415)
++.+.+..+|+++-++|..
T Consensus 70 ~~~~~~~~~d~vi~~ag~~ 88 (275)
T PRK08263 70 TAVEHFGRLDIVVNNAGYG 88 (275)
T ss_pred HHHHHcCCCCEEEECCCCc
Confidence 6666677899988888764
No 413
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=39.30 E-value=49 Score=31.65 Aligned_cols=36 Identities=19% Similarity=0.394 Sum_probs=28.5
Q ss_pred CCCCCCeEEEEeeCcchHHHHHHHHHcCCCceEEEEE-EC
Q 014946 54 APMETAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAI-NT 92 (415)
Q Consensus 54 ~~~~~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iai-nT 92 (415)
.....+++.|.|+|..|.+++..|.+.|. ..++| |.
T Consensus 27 ~~l~~~~v~I~G~G~VG~~~a~~L~~~g~---~vv~v~D~ 63 (227)
T cd01076 27 IGLAGARVAIQGFGNVGSHAARFLHEAGA---KVVAVSDS 63 (227)
T ss_pred CCccCCEEEEECCCHHHHHHHHHHHHCCC---EEEEEECC
Confidence 34467999999999999999999998864 45644 44
No 414
>PRK09009 C factor cell-cell signaling protein; Provisional
Probab=39.23 E-value=1.5e+02 Score=27.23 Aligned_cols=77 Identities=17% Similarity=0.187 Sum_probs=42.8
Q ss_pred CeEEEEe-eCcchHHHHHHHHHcCCCceEEEEEECCHHHHhcCCCCCCe-eccccccccCCCCCCchhhHHHHHHHHHHH
Q 014946 59 AKIKVVG-VGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSAAENPL-QIGDLLTRGLGTGGNPLLGEQAAEESKEVI 136 (415)
Q Consensus 59 ~~i~vIG-vGgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~~~~~ki-~ig~~~t~G~GaG~n~~~G~~~aee~~e~I 136 (415)
|+++|.| -||.|-.++.+|.+.+. ++..++.+.+... ... ..++ .+--.++ + .+..+++
T Consensus 1 ~~vlItGas~gIG~~ia~~l~~~~~-~~~v~~~~~~~~~--~~~-~~~~~~~~~Dls-------~--------~~~~~~~ 61 (235)
T PRK09009 1 MNILIVGGSGGIGKAMVKQLLERYP-DATVHATYRHHKP--DFQ-HDNVQWHALDVT-------D--------EAEIKQL 61 (235)
T ss_pred CEEEEECCCChHHHHHHHHHHHhCC-CCEEEEEccCCcc--ccc-cCceEEEEecCC-------C--------HHHHHHH
Confidence 5788888 57788999999988753 3444444433211 111 1111 1100000 1 1223346
Q ss_pred HHHhcCCCEEEEeccCCC
Q 014946 137 ANALKGSDLVFITAGMGG 154 (415)
Q Consensus 137 ~~~le~~D~~~I~agLGG 154 (415)
.+.++..|+++..+|...
T Consensus 62 ~~~~~~id~li~~aG~~~ 79 (235)
T PRK09009 62 SEQFTQLDWLINCVGMLH 79 (235)
T ss_pred HHhcCCCCEEEECCcccc
Confidence 667788999998888753
No 415
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=39.22 E-value=1.4e+02 Score=27.77 Aligned_cols=84 Identities=14% Similarity=0.199 Sum_probs=48.6
Q ss_pred CCCCeEEEEee-CcchHHHHHHHHHcCCCceEEEEEECCHHHHhcCC----C-CCCee-ccccccccCCCCCCchhhHHH
Q 014946 56 METAKIKVVGV-GGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSA----A-ENPLQ-IGDLLTRGLGTGGNPLLGEQA 128 (415)
Q Consensus 56 ~~~~~i~vIGv-GgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~~----~-~~ki~-ig~~~t~G~GaG~n~~~G~~~ 128 (415)
+...+++|.|. |+.|..++.+|.+.|. +.+.+.-+...+.... . ..++. +- .|.. -.+.
T Consensus 5 ~~~~~vlItGasg~iG~~la~~l~~~G~---~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~----------~Dl~-~~~~ 70 (262)
T PRK13394 5 LNGKTAVVTGAASGIGKEIALELARAGA---AVAIADLNQDGANAVADEINKAGGKAIGVA----------MDVT-NEDA 70 (262)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC---eEEEEeCChHHHHHHHHHHHhcCceEEEEE----------CCCC-CHHH
Confidence 34567999998 8899999999999875 3556666554433211 0 11111 10 0111 1123
Q ss_pred HHHHHHHHHHHhcCCCEEEEeccCC
Q 014946 129 AEESKEVIANALKGSDLVFITAGMG 153 (415)
Q Consensus 129 aee~~e~I~~~le~~D~~~I~agLG 153 (415)
.++..+++++....+|.++-++|..
T Consensus 71 ~~~~~~~~~~~~~~~d~vi~~ag~~ 95 (262)
T PRK13394 71 VNAGIDKVAERFGSVDILVSNAGIQ 95 (262)
T ss_pred HHHHHHHHHHHcCCCCEEEECCccC
Confidence 3444555666667789887777654
No 416
>PRK08618 ornithine cyclodeaminase; Validated
Probab=39.19 E-value=1.7e+02 Score=29.28 Aligned_cols=105 Identities=14% Similarity=0.207 Sum_probs=57.7
Q ss_pred CCCCCCeEEEEeeCcchHHHHHHHHHc-CCCceEEEEEECCHHHHhcCCCCCCeeccccccccCCCCCCchhhHHHHHHH
Q 014946 54 APMETAKIKVVGVGGGGNNAVNRMIGS-GLQGVDFYAINTDSQALLQSAAENPLQIGDLLTRGLGTGGNPLLGEQAAEES 132 (415)
Q Consensus 54 ~~~~~~~i~vIGvGgaG~niv~~l~~~-~~~~v~~iainTD~~~L~~~~~~~ki~ig~~~t~G~GaG~n~~~G~~~aee~ 132 (415)
.+.+..++.|||.|+.|-..+..+... +++ +...+|-+.+..+.....-+-..+ . +. ..
T Consensus 123 a~~~~~~v~iiGaG~~a~~~~~al~~~~~~~--~v~v~~r~~~~a~~~~~~~~~~~~--------~--~~--------~~ 182 (325)
T PRK08618 123 AREDAKTLCLIGTGGQAKGQLEAVLAVRDIE--RVRVYSRTFEKAYAFAQEIQSKFN--------T--EI--------YV 182 (325)
T ss_pred cCCCCcEEEEECCcHHHHHHHHHHHhcCCcc--EEEEECCCHHHHHHHHHHHHHhcC--------C--cE--------EE
Confidence 344567899999999999888777643 443 344557766654432110000000 0 00 00
Q ss_pred HHHHHHHhcCCCEEEEeccCCCCccCChHHHHHHHHHHhCCceEEEEe-cCCCCc
Q 014946 133 KEVIANALKGSDLVFITAGMGGGTGSGAAPVVAQIAKEAGYLTVGVVT-YPFSFE 186 (415)
Q Consensus 133 ~e~I~~~le~~D~~~I~agLGGGTGSG~apvia~~ake~g~~tvavvt-lP~~~E 186 (415)
.+...+++.++|+|+.+.+ ++ .|++.+.+ +-|..+.+|.. .|...|
T Consensus 183 ~~~~~~~~~~aDiVi~aT~------s~-~p~i~~~l-~~G~hV~~iGs~~p~~~E 229 (325)
T PRK08618 183 VNSADEAIEEADIIVTVTN------AK-TPVFSEKL-KKGVHINAVGSFMPDMQE 229 (325)
T ss_pred eCCHHHHHhcCCEEEEccC------CC-CcchHHhc-CCCcEEEecCCCCccccc
Confidence 1223455678998876543 33 47776333 45788887764 344444
No 417
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=39.18 E-value=79 Score=31.42 Aligned_cols=46 Identities=28% Similarity=0.385 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHhcCCCEEEEeccCCCCccCChHHHHHHHHHHhCCceEEE
Q 014946 129 AEESKEVIANALKGSDLVFITAGMGGGTGSGAAPVVAQIAKEAGYLTVGV 178 (415)
Q Consensus 129 aee~~e~I~~~le~~D~~~I~agLGGGTGSG~apvia~~ake~g~~tvav 178 (415)
..+-+++++++.+.+|+++|+ ||.-|.=+--|++++++++..+|-|
T Consensus 196 T~~RQ~a~~~La~~vD~miVI----Gg~~SsNT~kL~eia~~~~~~t~~I 241 (281)
T PF02401_consen 196 TQNRQEAARELAKEVDAMIVI----GGKNSSNTRKLAEIAKEHGKPTYHI 241 (281)
T ss_dssp HHHHHHHHHHHHCCSSEEEEE----S-TT-HHHHHHHHHHHHCTTCEEEE
T ss_pred HHHHHHHHHHHHhhCCEEEEe----cCCCCccHHHHHHHHHHhCCCEEEe
Confidence 344466677788899988887 4455666777999999988777755
No 418
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=39.14 E-value=1.7e+02 Score=29.75 Aligned_cols=37 Identities=14% Similarity=0.296 Sum_probs=23.5
Q ss_pred CCCCeEEEEeeCcc-hHHHHHHHHHcCCCceEEEEEEC
Q 014946 56 METAKIKVVGVGGG-GNNAVNRMIGSGLQGVDFYAINT 92 (415)
Q Consensus 56 ~~~~~i~vIGvGga-G~niv~~l~~~~~~~v~~iainT 92 (415)
..++||.|||.-|. |.-++..|.+++.+..+..++-+
T Consensus 5 ~~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las 42 (344)
T PLN02383 5 ENGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLAS 42 (344)
T ss_pred CCCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEc
Confidence 35689999998665 44666666665555555555533
No 419
>PLN02852 ferredoxin-NADP+ reductase
Probab=39.12 E-value=49 Score=35.49 Aligned_cols=31 Identities=23% Similarity=0.376 Sum_probs=25.7
Q ss_pred cccCCCCCCCeEEEEeeCcchHHHHHHHHHc
Q 014946 50 SCSFAPMETAKIKVVGVGGGGNNAVNRMIGS 80 (415)
Q Consensus 50 ~~~~~~~~~~~i~vIGvGgaG~niv~~l~~~ 80 (415)
+.+-++..+.||+|||-|.||..++..|.+.
T Consensus 18 ~~~~~~~~~~~VaIVGaGPAGl~AA~~L~~~ 48 (491)
T PLN02852 18 NSSSSTSEPLHVCVVGSGPAGFYTADKLLKA 48 (491)
T ss_pred cCCCCCCCCCcEEEECccHHHHHHHHHHHhh
Confidence 5555556678999999999999999999863
No 420
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=39.09 E-value=47 Score=28.93 Aligned_cols=26 Identities=42% Similarity=0.613 Sum_probs=18.4
Q ss_pred HHHHHHHHHhcCCCEEEEeccCCCCc
Q 014946 131 ESKEVIANALKGSDLVFITAGMGGGT 156 (415)
Q Consensus 131 e~~e~I~~~le~~D~~~I~agLGGGT 156 (415)
+..+.+++.++++|+|+.+.|+|-|.
T Consensus 45 ~i~~~l~~~~~~~D~VittGG~g~~~ 70 (144)
T PF00994_consen 45 AIKEALRRALDRADLVITTGGTGPGP 70 (144)
T ss_dssp HHHHHHHHHHHTTSEEEEESSSSSST
T ss_pred HHHHHHHhhhccCCEEEEcCCcCccc
Confidence 34566677888899999986655443
No 421
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=38.98 E-value=48 Score=33.74 Aligned_cols=38 Identities=18% Similarity=0.346 Sum_probs=27.1
Q ss_pred CCCCeEEEEee-CcchHHHHHHHHHcCCCceEEEEEECC
Q 014946 56 METAKIKVVGV-GGGGNNAVNRMIGSGLQGVDFYAINTD 93 (415)
Q Consensus 56 ~~~~~i~vIGv-GgaG~niv~~l~~~~~~~v~~iainTD 93 (415)
++++||.|||. |-.|..++.-|.++..+..+...+-++
T Consensus 2 ~~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~ 40 (336)
T PRK08040 2 SEGWNIALLGATGAVGEALLELLAERQFPVGELYALASE 40 (336)
T ss_pred CCCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEcc
Confidence 36789999999 666777777776655566666666544
No 422
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=38.91 E-value=1.2e+02 Score=32.43 Aligned_cols=49 Identities=20% Similarity=0.262 Sum_probs=35.8
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCH--HHHhcCCCCCCeeccc
Q 014946 59 AKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDS--QALLQSAAENPLQIGD 110 (415)
Q Consensus 59 ~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~--~~L~~~~~~~ki~ig~ 110 (415)
.||+|+|=|..+..++..+.+.|+ +++++.+|. .++....++..+.+|.
T Consensus 3 ~kvLIan~Geia~~iiraar~lGi---~~V~v~s~~d~~a~~~~~AD~~~~i~~ 53 (499)
T PRK08654 3 KKILIANRGEIAIRVMRACRELGI---KTVAVYSEADKNALFVKYADEAYPIGP 53 (499)
T ss_pred ceEEEECCcHHHHHHHHHHHHcCC---eEEEEeccccccccchhhCCEEEEcCC
Confidence 489999999999999999988875 477887743 3333234566677764
No 423
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=38.68 E-value=1.4e+02 Score=28.03 Aligned_cols=83 Identities=13% Similarity=0.165 Sum_probs=49.1
Q ss_pred CCCeEEEEee-CcchHHHHHHHHHcCCCceEEEEEECCHHHHhcCCC--CCCe-eccccccccCCCCCCchhhHHHHHHH
Q 014946 57 ETAKIKVVGV-GGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSAA--ENPL-QIGDLLTRGLGTGGNPLLGEQAAEES 132 (415)
Q Consensus 57 ~~~~i~vIGv-GgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~~~--~~ki-~ig~~~t~G~GaG~n~~~G~~~aee~ 132 (415)
.+.+++|.|. |+-|..++.+|.+.|. +.+.++-+...++.... ..++ .+--.+ .++ +..++.
T Consensus 5 ~~k~vlVtGas~gIG~~ia~~l~~~G~---~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~-------~~~----~~~~~~ 70 (263)
T PRK06200 5 HGQVALITGGGSGIGRALVERFLAEGA---RVAVLERSAEKLASLRQRFGDHVLVVEGDV-------TSY----ADNQRA 70 (263)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHhCCcceEEEccC-------CCH----HHHHHH
Confidence 4567888886 6789999999998874 45666666655543311 1111 110001 112 234445
Q ss_pred HHHHHHHhcCCCEEEEeccCC
Q 014946 133 KEVIANALKGSDLVFITAGMG 153 (415)
Q Consensus 133 ~e~I~~~le~~D~~~I~agLG 153 (415)
.+++.+.....|.++-.+|..
T Consensus 71 ~~~~~~~~g~id~li~~ag~~ 91 (263)
T PRK06200 71 VDQTVDAFGKLDCFVGNAGIW 91 (263)
T ss_pred HHHHHHhcCCCCEEEECCCCc
Confidence 556666667789888887754
No 424
>PRK10537 voltage-gated potassium channel; Provisional
Probab=38.58 E-value=1.2e+02 Score=31.68 Aligned_cols=94 Identities=16% Similarity=0.105 Sum_probs=55.3
Q ss_pred CCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHhcCCCCCCeeccccccccCCCCCCchhhHHHHHHHHHHHH
Q 014946 58 TAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSAAENPLQIGDLLTRGLGTGGNPLLGEQAAEESKEVIA 137 (415)
Q Consensus 58 ~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~~~~~ki~ig~~~t~G~GaG~n~~~G~~~aee~~e~I~ 137 (415)
+..+.|+|.|.-|-++++.|.+.+. +++.++.|... ...+....+..| |+. +.+.++
T Consensus 240 k~HvII~G~g~lg~~v~~~L~~~g~---~vvVId~d~~~-~~~~~g~~vI~G-----------D~t--------d~e~L~ 296 (393)
T PRK10537 240 KDHFIICGHSPLAINTYLGLRQRGQ---AVTVIVPLGLE-HRLPDDADLIPG-----------DSS--------DSAVLK 296 (393)
T ss_pred CCeEEEECCChHHHHHHHHHHHCCC---CEEEEECchhh-hhccCCCcEEEe-----------CCC--------CHHHHH
Confidence 5679999999999999999987764 57888877331 111112222222 221 112222
Q ss_pred H-HhcCCCEEEEeccCCCCccCChHHH-HHHHHHHhCC--ceEEEEe
Q 014946 138 N-ALKGSDLVFITAGMGGGTGSGAAPV-VAQIAKEAGY--LTVGVVT 180 (415)
Q Consensus 138 ~-~le~~D~~~I~agLGGGTGSG~apv-ia~~ake~g~--~tvavvt 180 (415)
+ -+++|+.++++.. .-.... ++..+|+.+. .+++.+.
T Consensus 297 ~AgI~~A~aVI~~t~------dD~~Nl~ivL~ar~l~p~~kIIa~v~ 337 (393)
T PRK10537 297 KAGAARARAILALRD------NDADNAFVVLAAKEMSSDVKTVAAVN 337 (393)
T ss_pred hcCcccCCEEEEcCC------ChHHHHHHHHHHHHhCCCCcEEEEEC
Confidence 2 3678998887542 333333 5567788753 4555543
No 425
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=38.52 E-value=3.3e+02 Score=25.26 Aligned_cols=117 Identities=21% Similarity=0.241 Sum_probs=66.4
Q ss_pred CCCeEEEEeeCcchHHHH---HHHH---HcCCCceEEEEEECCHHHHhcCCCCCCeeccccccccCCCCCCchhhHHHHH
Q 014946 57 ETAKIKVVGVGGGGNNAV---NRMI---GSGLQGVDFYAINTDSQALLQSAAENPLQIGDLLTRGLGTGGNPLLGEQAAE 130 (415)
Q Consensus 57 ~~~~i~vIGvGgaG~niv---~~l~---~~~~~~v~~iainTD~~~L~~~~~~~ki~ig~~~t~G~GaG~n~~~G~~~ae 130 (415)
+..||.+.|-||.-+++- ..|. +..-+..-.+|+.||...|..+. +|+ |+ |
T Consensus 40 ~G~Kvl~cGNGgSaadAqHfaael~gRf~~eR~~lpaIaLt~dsS~lTai~------------------NDy--~y---d 96 (176)
T COG0279 40 NGNKVLACGNGGSAADAQHFAAELTGRFEKERPSLPAIALSTDSSVLTAIA------------------NDY--GY---D 96 (176)
T ss_pred cCCEEEEECCCcchhhHHHHHHHHhhHHHhcCCCCCeeEeecccHHHhhhh------------------ccc--cH---H
Confidence 478899999998888742 2221 11224466899999999987642 222 11 2
Q ss_pred HHHHH-HHHHhcCCCEEEEeccCCCCccCChHHHHHHHHHHhCCceEEEEecCCCCchhhhHHHHHHHHHHHHhhCCEEE
Q 014946 131 ESKEV-IANALKGSDLVFITAGMGGGTGSGAAPVVAQIAKEAGYLTVGVVTYPFSFEGRKRSSQALEAIERLQKNVDTLI 209 (415)
Q Consensus 131 e~~e~-I~~~le~~D~~~I~agLGGGTGSG~apvia~~ake~g~~tvavvtlP~~~Eg~~r~~nA~~~l~~L~e~~D~vi 209 (415)
+...+ ++..-+.-|.++=+.-.| - |.-.---.+.||+.++.|+++. -..-| ++.+.+|-.|
T Consensus 97 ~vFsRqveA~g~~GDvLigISTSG-N--S~nVl~Ai~~Ak~~gm~vI~lt---G~~GG------------~~~~~~D~~i 158 (176)
T COG0279 97 EVFSRQVEALGQPGDVLIGISTSG-N--SKNVLKAIEAAKEKGMTVIALT---GKDGG------------KLAGLLDVEI 158 (176)
T ss_pred HHHHHHHHhcCCCCCEEEEEeCCC-C--CHHHHHHHHHHHHcCCEEEEEe---cCCCc------------ccccccceEE
Confidence 22222 333333456655444333 2 1111113466788888888763 33334 3566778888
Q ss_pred EEeCc
Q 014946 210 VIPND 214 (415)
Q Consensus 210 v~dNd 214 (415)
.+|-.
T Consensus 159 ~VPs~ 163 (176)
T COG0279 159 RVPST 163 (176)
T ss_pred ecCCC
Confidence 88765
No 426
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=38.48 E-value=1.2e+02 Score=27.77 Aligned_cols=83 Identities=17% Similarity=0.178 Sum_probs=46.2
Q ss_pred CCeEEEEee-CcchHHHHHHHHHcCCCceEEEEE-ECCHHHHhcCCC-----CCCeeccccccccCCCCCCchhhHHHHH
Q 014946 58 TAKIKVVGV-GGGGNNAVNRMIGSGLQGVDFYAI-NTDSQALLQSAA-----ENPLQIGDLLTRGLGTGGNPLLGEQAAE 130 (415)
Q Consensus 58 ~~~i~vIGv-GgaG~niv~~l~~~~~~~v~~iai-nTD~~~L~~~~~-----~~ki~ig~~~t~G~GaG~n~~~G~~~ae 130 (415)
..+++|+|. |+-|..++.+|.+.|. +.+.+ +.+...+..... ..++.+=. .|... .+..+
T Consensus 5 ~~~ilI~Gasg~iG~~la~~l~~~g~---~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~---------~D~~~-~~~~~ 71 (247)
T PRK05565 5 GKVAIVTGASGGIGRAIAELLAKEGA---KVVIAYDINEEAAQELLEEIKEEGGDAIAVK---------ADVSS-EEDVE 71 (247)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEEcCCCHHHHHHHHHHHHhcCCeEEEEE---------CCCCC-HHHHH
Confidence 457999986 8999999999988764 45555 665544432110 11111100 01110 11223
Q ss_pred HHHHHHHHHhcCCCEEEEeccCC
Q 014946 131 ESKEVIANALKGSDLVFITAGMG 153 (415)
Q Consensus 131 e~~e~I~~~le~~D~~~I~agLG 153 (415)
...+++.+.+..+|.++..+|..
T Consensus 72 ~~~~~~~~~~~~id~vi~~ag~~ 94 (247)
T PRK05565 72 NLVEQIVEKFGKIDILVNNAGIS 94 (247)
T ss_pred HHHHHHHHHhCCCCEEEECCCcC
Confidence 33445555556799988887754
No 427
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=38.40 E-value=86 Score=36.90 Aligned_cols=36 Identities=22% Similarity=0.391 Sum_probs=28.5
Q ss_pred CCeEEEEeeCcc-----------hHHHHHHHHHcCCCceEEEEEECCHHH
Q 014946 58 TAKIKVVGVGGG-----------GNNAVNRMIGSGLQGVDFYAINTDSQA 96 (415)
Q Consensus 58 ~~~i~vIGvGga-----------G~niv~~l~~~~~~~v~~iainTD~~~ 96 (415)
-.||+|+|-|.. |..++..|.+.|+ +.+++|.+...
T Consensus 7 ~~kvLiig~G~~~igq~~e~d~sg~~~~~aLke~G~---~vi~v~~~p~~ 53 (1066)
T PRK05294 7 IKKILIIGSGPIVIGQACEFDYSGTQACKALREEGY---RVVLVNSNPAT 53 (1066)
T ss_pred CCEEEEECCchhhhcccccccchHHHHHHHHHHcCC---EEEEEcCCccc
Confidence 468999999973 5678888888765 68999987754
No 428
>PRK08463 acetyl-CoA carboxylase subunit A; Validated
Probab=38.27 E-value=1.2e+02 Score=32.24 Aligned_cols=48 Identities=21% Similarity=0.222 Sum_probs=35.0
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHH--HHhcCCCCCCeecc
Q 014946 59 AKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQ--ALLQSAAENPLQIG 109 (415)
Q Consensus 59 ~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~--~L~~~~~~~ki~ig 109 (415)
.||+|+|=|..+..++..+.+.|+ +.++++++.. ++....++..+.++
T Consensus 3 kkiLi~~~ge~a~~~i~aa~~lG~---~~v~v~~~~d~~~~~~~~AD~~~~i~ 52 (478)
T PRK08463 3 HKILIANRGEIAVRVIRACRDLHI---KSVAIYTEPDRECLHVKIADEAYRIG 52 (478)
T ss_pred cEEEEECCCHHHHHHHHHHHHcCC---eEEEEECCCccCCcchhhcCEEEEcC
Confidence 589999999999999999888875 5888888543 23222355566665
No 429
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=38.26 E-value=2e+02 Score=27.03 Aligned_cols=84 Identities=14% Similarity=0.129 Sum_probs=47.1
Q ss_pred CCCeEEEEeeC---cchHHHHHHHHHcCCCceEEEEEECCHH---HHhcCCCCCCeeccccccccCCCCCCchhhHHHHH
Q 014946 57 ETAKIKVVGVG---GGGNNAVNRMIGSGLQGVDFYAINTDSQ---ALLQSAAENPLQIGDLLTRGLGTGGNPLLGEQAAE 130 (415)
Q Consensus 57 ~~~~i~vIGvG---gaG~niv~~l~~~~~~~v~~iainTD~~---~L~~~~~~~ki~ig~~~t~G~GaG~n~~~G~~~ae 130 (415)
....+.|.|-+ |.|-.++.+|.+.|.. .+.+.-+.. .+.+.....-..+.-.+ .++ +..+
T Consensus 6 ~~k~~lItGas~~~gIG~a~a~~la~~G~~---Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl-------~~~----~~v~ 71 (252)
T PRK06079 6 SGKKIVVMGVANKRSIAWGCAQAIKDQGAT---VIYTYQNDRMKKSLQKLVDEEDLLVECDV-------ASD----ESIE 71 (252)
T ss_pred CCCEEEEeCCCCCCchHHHHHHHHHHCCCE---EEEecCchHHHHHHHhhccCceeEEeCCC-------CCH----HHHH
Confidence 45578899985 8999999999998753 333332222 12222111111111111 122 3344
Q ss_pred HHHHHHHHHhcCCCEEEEeccCCC
Q 014946 131 ESKEVIANALKGSDLVFITAGMGG 154 (415)
Q Consensus 131 e~~e~I~~~le~~D~~~I~agLGG 154 (415)
+..+++.+.....|.++-.+|+..
T Consensus 72 ~~~~~~~~~~g~iD~lv~nAg~~~ 95 (252)
T PRK06079 72 RAFATIKERVGKIDGIVHAIAYAK 95 (252)
T ss_pred HHHHHHHHHhCCCCEEEEcccccc
Confidence 555666666778899888887653
No 430
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=38.13 E-value=1e+02 Score=36.31 Aligned_cols=36 Identities=25% Similarity=0.362 Sum_probs=29.1
Q ss_pred CCeEEEEeeCcc-----------hHHHHHHHHHcCCCceEEEEEECCHHH
Q 014946 58 TAKIKVVGVGGG-----------GNNAVNRMIGSGLQGVDFYAINTDSQA 96 (415)
Q Consensus 58 ~~~i~vIGvGga-----------G~niv~~l~~~~~~~v~~iainTD~~~ 96 (415)
-.||+|||-|.. |..++..|.+.|+ +.+++|.++..
T Consensus 7 ~~kvlviG~G~~~igq~~E~d~sg~q~~~aL~e~G~---~vi~v~~np~~ 53 (1068)
T PRK12815 7 IQKILVIGSGPIVIGQAAEFDYSGTQACLALKEEGY---QVVLVNPNPAT 53 (1068)
T ss_pred CCEEEEECCCcchhcchhhhhhHHHHHHHHHHHcCC---EEEEEeCCcch
Confidence 468999999975 6788888888775 58899988754
No 431
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=38.08 E-value=34 Score=29.52 Aligned_cols=38 Identities=45% Similarity=0.644 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhcCCCEEEEeccCCCCccCChHHHHHHHHHHh
Q 014946 130 EESKEVIANALKGSDLVFITAGMGGGTGSGAAPVVAQIAKEA 171 (415)
Q Consensus 130 ee~~e~I~~~le~~D~~~I~agLGGGTGSG~apvia~~ake~ 171 (415)
++..+.+++.++++|+++.+ ||||-|---+..+.++++
T Consensus 45 ~~I~~~l~~~~~~~dliitt----GG~g~g~~D~t~~~l~~~ 82 (135)
T smart00852 45 EAIKEALREALERADLVITT----GGTGPGPDDVTPEAVAEA 82 (135)
T ss_pred HHHHHHHHHHHhCCCEEEEc----CCCCCCCCcCcHHHHHHH
Confidence 34456666777789987765 567666555566666665
No 432
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=38.04 E-value=63 Score=31.58 Aligned_cols=41 Identities=15% Similarity=0.390 Sum_probs=31.8
Q ss_pred CCCCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHh
Q 014946 56 METAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALL 98 (415)
Q Consensus 56 ~~~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~ 98 (415)
....+++|+|.||+|-.++..|...|+. +...+|-+.+..+
T Consensus 121 ~~~k~vlVlGaGg~a~ai~~aL~~~g~~--~V~v~~R~~~~a~ 161 (278)
T PRK00258 121 LKGKRILILGAGGAARAVILPLLDLGVA--EITIVNRTVERAE 161 (278)
T ss_pred CCCCEEEEEcCcHHHHHHHHHHHHcCCC--EEEEEeCCHHHHH
Confidence 3456899999999999999999988754 4566777665544
No 433
>PTZ00175 diphthine synthase; Provisional
Probab=38.02 E-value=2.4e+02 Score=27.79 Aligned_cols=40 Identities=18% Similarity=0.120 Sum_probs=23.0
Q ss_pred HHHHHHHhcCCCEEEEeccCCCCccCChHHHHHHHHHHhCCc
Q 014946 133 KEVIANALKGSDLVFITAGMGGGTGSGAAPVVAQIAKEAGYL 174 (415)
Q Consensus 133 ~e~I~~~le~~D~~~I~agLGGGTGSG~apvia~~ake~g~~ 174 (415)
.++|.+.+++-+.++++.|--+-.+++. .+.+.+++.|+.
T Consensus 67 ~~~ii~~a~~~~Vv~L~~GDP~i~~t~~--~l~~~~~~~gi~ 106 (270)
T PTZ00175 67 CDEILEEAKEKNVAFLVVGDPFCATTHT--DLYLRAKKKGIE 106 (270)
T ss_pred HHHHHHHhCCCCEEEEECCCCCccCCHH--HHHHHHHHCCCc
Confidence 3445555555568888866555444443 245567777765
No 434
>PRK05865 hypothetical protein; Provisional
Probab=37.95 E-value=1.5e+02 Score=34.09 Aligned_cols=71 Identities=18% Similarity=0.271 Sum_probs=43.8
Q ss_pred CeEEEEee-CcchHHHHHHHHHcCCCceEEEEEECCHHHHhcCCCCCCeeccccccccCCCCCCchhhHHHHHHHHHHHH
Q 014946 59 AKIKVVGV-GGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSAAENPLQIGDLLTRGLGTGGNPLLGEQAAEESKEVIA 137 (415)
Q Consensus 59 ~~i~vIGv-GgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~~~~~ki~ig~~~t~G~GaG~n~~~G~~~aee~~e~I~ 137 (415)
|||+|.|. |..|..++.+|.+.|. +.++++-+.... .+..-.+..+ |. .+.+.+.
T Consensus 1 MkILVTGATGfIGs~La~~Ll~~G~---~Vv~l~R~~~~~--~~~~v~~v~g-----------DL--------~D~~~l~ 56 (854)
T PRK05865 1 MRIAVTGASGVLGRGLTARLLSQGH---EVVGIARHRPDS--WPSSADFIAA-----------DI--------RDATAVE 56 (854)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcC---EEEEEECCchhh--cccCceEEEe-----------eC--------CCHHHHH
Confidence 68999996 9999999999998874 455665432211 1101111111 11 1335566
Q ss_pred HHhcCCCEEEEeccCC
Q 014946 138 NALKGSDLVFITAGMG 153 (415)
Q Consensus 138 ~~le~~D~~~I~agLG 153 (415)
+.++++|.|+-+|+..
T Consensus 57 ~al~~vD~VVHlAa~~ 72 (854)
T PRK05865 57 SAMTGADVVAHCAWVR 72 (854)
T ss_pred HHHhCCCEEEECCCcc
Confidence 7777899998888654
No 435
>PRK06482 short chain dehydrogenase; Provisional
Probab=37.86 E-value=1.5e+02 Score=28.14 Aligned_cols=82 Identities=22% Similarity=0.202 Sum_probs=47.6
Q ss_pred CeEEEEee-CcchHHHHHHHHHcCCCceEEEEEECCHHHHhcCCCC--CCeeccccccccCCCCCCchhhHHHHHHHHHH
Q 014946 59 AKIKVVGV-GGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSAAE--NPLQIGDLLTRGLGTGGNPLLGEQAAEESKEV 135 (415)
Q Consensus 59 ~~i~vIGv-GgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~~~~--~ki~ig~~~t~G~GaG~n~~~G~~~aee~~e~ 135 (415)
.+++|.|. |+.|..++.+|.+.|. ..+++.-+.+.+...... .++.+ .. .|..- .+..++..++
T Consensus 3 k~vlVtGasg~IG~~la~~L~~~g~---~v~~~~r~~~~~~~~~~~~~~~~~~----~~-----~D~~~-~~~~~~~~~~ 69 (276)
T PRK06482 3 KTWFITGASSGFGRGMTERLLARGD---RVAATVRRPDALDDLKARYGDRLWV----LQ-----LDVTD-SAAVRAVVDR 69 (276)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHhccCceEE----EE-----ccCCC-HHHHHHHHHH
Confidence 46889985 7899999999998874 455666666555432111 11110 00 11111 1223344455
Q ss_pred HHHHhcCCCEEEEeccCC
Q 014946 136 IANALKGSDLVFITAGMG 153 (415)
Q Consensus 136 I~~~le~~D~~~I~agLG 153 (415)
+.+....+|.++-++|..
T Consensus 70 ~~~~~~~id~vi~~ag~~ 87 (276)
T PRK06482 70 AFAALGRIDVVVSNAGYG 87 (276)
T ss_pred HHHHcCCCCEEEECCCCC
Confidence 555667789998888754
No 436
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=37.82 E-value=1.4e+02 Score=30.97 Aligned_cols=35 Identities=14% Similarity=0.176 Sum_probs=28.9
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHH
Q 014946 59 AKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQA 96 (415)
Q Consensus 59 ~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~ 96 (415)
.||+|||-|+.|-.++....+.|. .+++++++...
T Consensus 3 ~~ililg~g~~~~~~~~~a~~lG~---~~v~~~~~~~~ 37 (450)
T PRK06111 3 QKVLIANRGEIAVRIIRTCQKLGI---RTVAIYSEADR 37 (450)
T ss_pred ceEEEECCcHHHHHHHHHHHHcCC---eEEEEechhhc
Confidence 689999999999999998888774 58888876553
No 437
>PRK07109 short chain dehydrogenase; Provisional
Probab=37.80 E-value=1.5e+02 Score=29.69 Aligned_cols=85 Identities=14% Similarity=0.169 Sum_probs=49.7
Q ss_pred CCCCCCeEEEEee-CcchHHHHHHHHHcCCCceEEEEEECCHHHHhcCCC-----CCCee-ccccccccCCCCCCchhhH
Q 014946 54 APMETAKIKVVGV-GGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSAA-----ENPLQ-IGDLLTRGLGTGGNPLLGE 126 (415)
Q Consensus 54 ~~~~~~~i~vIGv-GgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~~~-----~~ki~-ig~~~t~G~GaG~n~~~G~ 126 (415)
.++...++.|.|- ||.|..++.+|.+.|. +.+++.-+.+.++.... ..++. +- .|.. -.
T Consensus 4 ~~l~~k~vlITGas~gIG~~la~~la~~G~---~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~----------~Dv~-d~ 69 (334)
T PRK07109 4 KPIGRQVVVITGASAGVGRATARAFARRGA---KVVLLARGEEGLEALAAEIRAAGGEALAVV----------ADVA-DA 69 (334)
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHHcCCcEEEEE----------ecCC-CH
Confidence 3455667899986 7889999999998874 45666666665543211 01111 10 0111 01
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeccC
Q 014946 127 QAAEESKEVIANALKGSDLVFITAGM 152 (415)
Q Consensus 127 ~~aee~~e~I~~~le~~D~~~I~agL 152 (415)
+..++..+++.+.+...|.++-.+|.
T Consensus 70 ~~v~~~~~~~~~~~g~iD~lInnAg~ 95 (334)
T PRK07109 70 EAVQAAADRAEEELGPIDTWVNNAMV 95 (334)
T ss_pred HHHHHHHHHHHHHCCCCCEEEECCCc
Confidence 23344555666666778988777654
No 438
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=37.64 E-value=1.2e+02 Score=32.53 Aligned_cols=80 Identities=15% Similarity=0.213 Sum_probs=50.0
Q ss_pred HHHHHHHHHHhcCCCEEEEeccCCCCccCChHHHHHHHHHHhCCceEEEEecCCCCch---hhhHHHHHHHHHHHHhhCC
Q 014946 130 EESKEVIANALKGSDLVFITAGMGGGTGSGAAPVVAQIAKEAGYLTVGVVTYPFSFEG---RKRSSQALEAIERLQKNVD 206 (415)
Q Consensus 130 ee~~e~I~~~le~~D~~~I~agLGGGTGSG~apvia~~ake~g~~tvavvtlP~~~Eg---~~r~~nA~~~l~~L~e~~D 206 (415)
.+..+++.+.|..+.--+|++|-|.- .+++...+.+++...+++++ +.+.. -| ...+++.-.+.+.+.+.+|
T Consensus 193 ~~~~~~~~~~L~~AkrPvi~~G~g~~-~~~a~~~l~~lae~~~~pv~---tt~~g-kg~~p~~hp~~~g~~~~~~~~~aD 267 (554)
T TIGR03254 193 PDSVDRAVELLKDAKRPLILLGKGAA-YAQADEEIREFVEKTGIPFL---PMSMA-KGLLPDTHPQSAAAARSFALAEAD 267 (554)
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCcc-ccChHHHHHHHHHHHCCCEE---EcCCc-ceeCCCCCchhhhHHHHHHHhcCC
Confidence 34567777788888755556664433 46888889999999998876 33221 00 0112333334456678899
Q ss_pred EEEEEeCc
Q 014946 207 TLIVIPND 214 (415)
Q Consensus 207 ~viv~dNd 214 (415)
.+|++-..
T Consensus 268 lvl~lG~~ 275 (554)
T TIGR03254 268 VVMLVGAR 275 (554)
T ss_pred EEEEECCC
Confidence 99997633
No 439
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=37.63 E-value=1.6e+02 Score=31.31 Aligned_cols=44 Identities=18% Similarity=0.197 Sum_probs=30.1
Q ss_pred CCCCeEEEEeeCcchH-HHHHHHHH-c-CCCceEEEEEECCHHHHhc
Q 014946 56 METAKIKVVGVGGGGN-NAVNRMIG-S-GLQGVDFYAINTDSQALLQ 99 (415)
Q Consensus 56 ~~~~~i~vIGvGgaG~-niv~~l~~-~-~~~~v~~iainTD~~~L~~ 99 (415)
|.++||.+||-|..+- ..|..++. . .++..+++.+|-|...|+.
T Consensus 1 m~~~KI~iIGgGSt~tp~~v~g~l~~~e~l~~~el~L~Did~~r~~~ 47 (442)
T COG1486 1 MKKFKIVIIGGGSTYTPKLLLGDLARTEELPVRELALYDIDEERLKI 47 (442)
T ss_pred CCcceEEEECCCccccHHHHHHHHhcCccCCcceEEEEeCCHHHHHH
Confidence 4578999999776654 22333332 2 4666789999999998874
No 440
>PRK08017 oxidoreductase; Provisional
Probab=37.60 E-value=1.7e+02 Score=27.21 Aligned_cols=36 Identities=17% Similarity=0.236 Sum_probs=28.4
Q ss_pred eEEEEee-CcchHHHHHHHHHcCCCceEEEEEECCHHHHh
Q 014946 60 KIKVVGV-GGGGNNAVNRMIGSGLQGVDFYAINTDSQALL 98 (415)
Q Consensus 60 ~i~vIGv-GgaG~niv~~l~~~~~~~v~~iainTD~~~L~ 98 (415)
++.|.|. |+.|..++.+|.+.|. +.+++.-+...++
T Consensus 4 ~vlVtGasg~IG~~la~~l~~~g~---~v~~~~r~~~~~~ 40 (256)
T PRK08017 4 SVLITGCSSGIGLEAALELKRRGY---RVLAACRKPDDVA 40 (256)
T ss_pred EEEEECCCChHHHHHHHHHHHCCC---EEEEEeCCHHHhH
Confidence 6999998 9999999999998874 4566666655554
No 441
>PRK05429 gamma-glutamyl kinase; Provisional
Probab=37.56 E-value=2.3e+02 Score=29.15 Aligned_cols=51 Identities=18% Similarity=0.160 Sum_probs=31.4
Q ss_pred HHHHHhCCceEEEEecCCCCchhhhHHHHHHHHHHHHhhCCEEEEEeCchh
Q 014946 166 QIAKEAGYLTVGVVTYPFSFEGRKRSSQALEAIERLQKNVDTLIVIPNDRL 216 (415)
Q Consensus 166 ~~ake~g~~tvavvtlP~~~Eg~~r~~nA~~~l~~L~e~~D~viv~dNd~L 216 (415)
+.++++|.....+...+..+....+..|+...++.|.+.----++-.|+.+
T Consensus 93 ~~l~~~gi~~~qil~t~~d~~~~~~~ln~~~~i~~Ll~~g~IPVi~~nd~v 143 (372)
T PRK05429 93 ELFARYGITVAQILLTRDDLEDRERYLNARNTLRTLLELGVVPIINENDTV 143 (372)
T ss_pred HHHHHCCCCEEEEEeehhHhhhhhHhhhHHHHHHHHHHCCCEEEEcCCCcc
Confidence 455667888777765655555455566888888888765333333235554
No 442
>PRK07832 short chain dehydrogenase; Provisional
Probab=37.27 E-value=2.1e+02 Score=27.12 Aligned_cols=80 Identities=21% Similarity=0.231 Sum_probs=46.1
Q ss_pred eEEEEee-CcchHHHHHHHHHcCCCceEEEEEECCHHHHhcCCC------CCCee-ccccccccCCCCCCchhhHHHHHH
Q 014946 60 KIKVVGV-GGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSAA------ENPLQ-IGDLLTRGLGTGGNPLLGEQAAEE 131 (415)
Q Consensus 60 ~i~vIGv-GgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~~~------~~ki~-ig~~~t~G~GaG~n~~~G~~~aee 131 (415)
++.|+|- |+-|..++.+|.+.|. ..++++.+...++.... .+.+. +- .|... .+..++
T Consensus 2 ~vlItGas~giG~~la~~la~~G~---~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~----------~D~~~-~~~~~~ 67 (272)
T PRK07832 2 RCFVTGAASGIGRATALRLAAQGA---ELFLTDRDADGLAQTVADARALGGTVPEHRA----------LDISD-YDAVAA 67 (272)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHHhcCCCcceEEE----------eeCCC-HHHHHH
Confidence 5778884 7888899999998774 45666666555433210 01110 00 01110 223445
Q ss_pred HHHHHHHHhcCCCEEEEeccCC
Q 014946 132 SKEVIANALKGSDLVFITAGMG 153 (415)
Q Consensus 132 ~~e~I~~~le~~D~~~I~agLG 153 (415)
..+++.+.....|+++..+|.+
T Consensus 68 ~~~~~~~~~~~id~lv~~ag~~ 89 (272)
T PRK07832 68 FAADIHAAHGSMDVVMNIAGIS 89 (272)
T ss_pred HHHHHHHhcCCCCEEEECCCCC
Confidence 5566666667889998888754
No 443
>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=37.19 E-value=53 Score=34.31 Aligned_cols=34 Identities=29% Similarity=0.340 Sum_probs=30.1
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCceEEEEEEC
Q 014946 59 AKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINT 92 (415)
Q Consensus 59 ~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainT 92 (415)
+||.|.|.|..|-.++..|++...+..+.++||-
T Consensus 61 ~kVaInGfGrIGR~vlr~l~~~~~~~~evvaINd 94 (395)
T PLN03096 61 IKVAINGFGRIGRNFLRCWHGRKDSPLDVVAIND 94 (395)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCCCeEEEEEcC
Confidence 7999999999999999988887666789999994
No 444
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=36.99 E-value=3.1e+02 Score=25.29 Aligned_cols=34 Identities=21% Similarity=0.271 Sum_probs=25.8
Q ss_pred CCCCeEEEEee-CcchHHHHHHHHHcCCCceEEEEEEC
Q 014946 56 METAKIKVVGV-GGGGNNAVNRMIGSGLQGVDFYAINT 92 (415)
Q Consensus 56 ~~~~~i~vIGv-GgaG~niv~~l~~~~~~~v~~iainT 92 (415)
.+..++.|.|. |+.|..++.+|.+.|. +.+.++.
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G~---~vi~~~r 37 (248)
T TIGR01832 3 LEGKVALVTGANTGLGQGIAVGLAEAGA---DIVGAGR 37 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEcC
Confidence 34577999998 6779999999999874 4555544
No 445
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=36.97 E-value=1.1e+02 Score=29.85 Aligned_cols=26 Identities=19% Similarity=0.134 Sum_probs=22.2
Q ss_pred CCCeEEEEee-CcchHHHHHHHHHcCC
Q 014946 57 ETAKIKVVGV-GGGGNNAVNRMIGSGL 82 (415)
Q Consensus 57 ~~~~i~vIGv-GgaG~niv~~l~~~~~ 82 (415)
++++++|.|. |+.|..++.+|.+.|.
T Consensus 4 ~~k~vlVtG~~G~IG~~l~~~L~~~G~ 30 (325)
T PLN02989 4 GGKVVCVTGASGYIASWIVKLLLFRGY 30 (325)
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCCC
Confidence 3578999996 8889999999999874
No 446
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=36.92 E-value=2.9e+02 Score=28.19 Aligned_cols=131 Identities=13% Similarity=0.124 Sum_probs=66.5
Q ss_pred CeEEEEeeCcch----HHHHHHHHHcCCCceEEEEEECCHHHHhcCCCCCCeeccccccccCCCCCCchhhHH--HHHHH
Q 014946 59 AKIKVVGVGGGG----NNAVNRMIGSGLQGVDFYAINTDSQALLQSAAENPLQIGDLLTRGLGTGGNPLLGEQ--AAEES 132 (415)
Q Consensus 59 ~~i~vIGvGgaG----~niv~~l~~~~~~~v~~iainTD~~~L~~~~~~~ki~ig~~~t~G~GaG~n~~~G~~--~aee~ 132 (415)
.||.++|-|.+| ..+++.|.+.+ .++.++.+-... +...-.+..+.+- .....+-++.=+. ..-..
T Consensus 6 ~ki~i~aGgtsGhi~paal~~~l~~~~-~~~~~~g~gg~~--m~~~g~~~~~~~~-----~l~v~G~~~~l~~~~~~~~~ 77 (385)
T TIGR00215 6 PTIALVAGEASGDILGAGLRQQLKEHY-PNARFIGVAGPR--MAAEGCEVLYSME-----ELSVMGLREVLGRLGRLLKI 77 (385)
T ss_pred CeEEEEeCCccHHHHHHHHHHHHHhcC-CCcEEEEEccHH--HHhCcCccccChH-----HhhhccHHHHHHHHHHHHHH
Confidence 467766655555 46777777655 357888876542 2221111101000 0111110111000 11223
Q ss_pred HHHHHHHhc--CCCEEEEeccCCCCccCChHHHHHHHHHHhCCceEEEEecCCC--CchhhhHHHHHHHHHHHHhhCCEE
Q 014946 133 KEVIANALK--GSDLVFITAGMGGGTGSGAAPVVAQIAKEAGYLTVGVVTYPFS--FEGRKRSSQALEAIERLQKNVDTL 208 (415)
Q Consensus 133 ~e~I~~~le--~~D~~~I~agLGGGTGSG~apvia~~ake~g~~tvavvtlP~~--~Eg~~r~~nA~~~l~~L~e~~D~v 208 (415)
..++++.++ ..|+|+.+ | |.|+-..++..++..+++++ +.+.|.. .++. + .+.+.+++|.+
T Consensus 78 ~~~~~~~l~~~kPd~vi~~---g---~~~~~~~~a~aa~~~gip~v-~~i~P~~waw~~~-----~---~r~l~~~~d~v 142 (385)
T TIGR00215 78 RKEVVQLAKQAKPDLLVGI---D---APDFNLTKELKKKDPGIKII-YYISPQVWAWRKW-----R---AKKIEKATDFL 142 (385)
T ss_pred HHHHHHHHHhcCCCEEEEe---C---CCCccHHHHHHHhhCCCCEE-EEeCCcHhhcCcc-----h---HHHHHHHHhHh
Confidence 345555554 57877654 3 24555668888899999887 3446652 3332 1 34567778877
Q ss_pred EEEe
Q 014946 209 IVIP 212 (415)
Q Consensus 209 iv~d 212 (415)
++.-
T Consensus 143 ~~~~ 146 (385)
T TIGR00215 143 LAIL 146 (385)
T ss_pred hccC
Confidence 7653
No 447
>PRK05855 short chain dehydrogenase; Validated
Probab=36.86 E-value=92 Score=32.84 Aligned_cols=87 Identities=21% Similarity=0.223 Sum_probs=52.3
Q ss_pred CCCCCCeEEEEee-CcchHHHHHHHHHcCCCceEEEEEECCHHHHhcCCCC-----CCee-ccccccccCCCCCCchhhH
Q 014946 54 APMETAKIKVVGV-GGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSAAE-----NPLQ-IGDLLTRGLGTGGNPLLGE 126 (415)
Q Consensus 54 ~~~~~~~i~vIGv-GgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~~~~-----~ki~-ig~~~t~G~GaG~n~~~G~ 126 (415)
.++..++++|+|- ||-|..++.+|.+.|. +.+.++-+...++..... .++. +.-.+ .++
T Consensus 311 ~~~~~~~~lv~G~s~giG~~~a~~l~~~G~---~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv-------~~~---- 376 (582)
T PRK05855 311 GPFSGKLVVVTGAGSGIGRETALAFAREGA---EVVASDIDEAAAERTAELIRAAGAVAHAYRVDV-------SDA---- 376 (582)
T ss_pred ccCCCCEEEEECCcCHHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCC-------CCH----
Confidence 4456688999986 8899999999998875 355556655554432110 0110 00000 122
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeccCCC
Q 014946 127 QAAEESKEVIANALKGSDLVFITAGMGG 154 (415)
Q Consensus 127 ~~aee~~e~I~~~le~~D~~~I~agLGG 154 (415)
+..++..+++.+.....|+++-.||.+.
T Consensus 377 ~~~~~~~~~~~~~~g~id~lv~~Ag~~~ 404 (582)
T PRK05855 377 DAMEAFAEWVRAEHGVPDIVVNNAGIGM 404 (582)
T ss_pred HHHHHHHHHHHHhcCCCcEEEECCccCC
Confidence 2344555666666677899998888753
No 448
>PRK07890 short chain dehydrogenase; Provisional
Probab=36.79 E-value=1.4e+02 Score=27.71 Aligned_cols=83 Identities=17% Similarity=0.083 Sum_probs=48.1
Q ss_pred CCCeEEEEee-CcchHHHHHHHHHcCCCceEEEEEECCHHHHhcCCC-----CCCeeccccccccCCCCCCchhhHHHHH
Q 014946 57 ETAKIKVVGV-GGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSAA-----ENPLQIGDLLTRGLGTGGNPLLGEQAAE 130 (415)
Q Consensus 57 ~~~~i~vIGv-GgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~~~-----~~ki~ig~~~t~G~GaG~n~~~G~~~ae 130 (415)
.+.++.|.|- |+-|..++.+|.+.|. +.+.++-+...++.... ..++.. .-.|... .+..+
T Consensus 4 ~~k~vlItGa~~~IG~~la~~l~~~G~---~V~~~~r~~~~~~~~~~~~~~~~~~~~~---------~~~D~~~-~~~~~ 70 (258)
T PRK07890 4 KGKVVVVSGVGPGLGRTLAVRAARAGA---DVVLAARTAERLDEVAAEIDDLGRRALA---------VPTDITD-EDQCA 70 (258)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHHHHhCCceEE---------EecCCCC-HHHHH
Confidence 4567999996 7889999999998874 45666655554433210 011110 0011111 22334
Q ss_pred HHHHHHHHHhcCCCEEEEeccC
Q 014946 131 ESKEVIANALKGSDLVFITAGM 152 (415)
Q Consensus 131 e~~e~I~~~le~~D~~~I~agL 152 (415)
...+++.+.+..+|.++-.+|.
T Consensus 71 ~~~~~~~~~~g~~d~vi~~ag~ 92 (258)
T PRK07890 71 NLVALALERFGRVDALVNNAFR 92 (258)
T ss_pred HHHHHHHHHcCCccEEEECCcc
Confidence 4455566666788998888765
No 449
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=36.76 E-value=42 Score=33.64 Aligned_cols=28 Identities=29% Similarity=0.457 Sum_probs=24.5
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCceEE
Q 014946 59 AKIKVVGVGGGGNNAVNRMIGSGLQGVDF 87 (415)
Q Consensus 59 ~~i~vIGvGgaG~niv~~l~~~~~~~v~~ 87 (415)
|||.|+|.|.-|+-..-+|.+.| ..|-+
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g-~~V~~ 28 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAG-HDVTL 28 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCC-CeEEE
Confidence 79999999999999999999998 54543
No 450
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=36.73 E-value=1.9e+02 Score=30.90 Aligned_cols=33 Identities=24% Similarity=0.414 Sum_probs=26.3
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCceEEEEEEC
Q 014946 59 AKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINT 92 (415)
Q Consensus 59 ~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainT 92 (415)
|||+|||-|+..-.++..|.+.. .+.+++++..
T Consensus 1 mkVLviG~Ggrehal~~~l~~s~-~g~~v~~~~g 33 (486)
T PRK05784 1 MKVLLVGDGAREHALAEALEKST-KGYKVYALSS 33 (486)
T ss_pred CEEEEECCchhHHHHHHHHHhCC-CCCEEEEEEC
Confidence 79999999999999999998773 2456666654
No 451
>PRK06914 short chain dehydrogenase; Provisional
Probab=36.70 E-value=1.6e+02 Score=28.01 Aligned_cols=83 Identities=12% Similarity=0.097 Sum_probs=46.3
Q ss_pred CCeEEEEe-eCcchHHHHHHHHHcCCCceEEEEEECCHHHHhcCC-------CCCCeeccccccccCCCCCCchhhHHHH
Q 014946 58 TAKIKVVG-VGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSA-------AENPLQIGDLLTRGLGTGGNPLLGEQAA 129 (415)
Q Consensus 58 ~~~i~vIG-vGgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~~-------~~~ki~ig~~~t~G~GaG~n~~~G~~~a 129 (415)
+..++|.| -|+-|..++..|.+.|. +.+++..+...++... .+.++.+= -.|... .+..
T Consensus 3 ~k~~lItGasg~iG~~la~~l~~~G~---~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~---------~~D~~d-~~~~ 69 (280)
T PRK06914 3 KKIAIVTGASSGFGLLTTLELAKKGY---LVIATMRNPEKQENLLSQATQLNLQQNIKVQ---------QLDVTD-QNSI 69 (280)
T ss_pred CCEEEEECCCchHHHHHHHHHHhCCC---EEEEEeCCHHHHHHHHHHHHhcCCCCceeEE---------ecCCCC-HHHH
Confidence 34577887 48899999999998874 4566665554433221 01111110 012211 1223
Q ss_pred HHHHHHHHHHhcCCCEEEEeccCCC
Q 014946 130 EESKEVIANALKGSDLVFITAGMGG 154 (415)
Q Consensus 130 ee~~e~I~~~le~~D~~~I~agLGG 154 (415)
+. .+++.+.+...|.++.++|...
T Consensus 70 ~~-~~~~~~~~~~id~vv~~ag~~~ 93 (280)
T PRK06914 70 HN-FQLVLKEIGRIDLLVNNAGYAN 93 (280)
T ss_pred HH-HHHHHHhcCCeeEEEECCcccc
Confidence 33 5556666677898888876543
No 452
>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional
Probab=36.60 E-value=77 Score=31.40 Aligned_cols=24 Identities=33% Similarity=0.344 Sum_probs=21.4
Q ss_pred CeEEEEee-CcchHHHHHHHHHcCC
Q 014946 59 AKIKVVGV-GGGGNNAVNRMIGSGL 82 (415)
Q Consensus 59 ~~i~vIGv-GgaG~niv~~l~~~~~ 82 (415)
|||+|.|. |..|..++.+|.+.|.
T Consensus 1 mkilITGgtG~iG~~l~~~L~~~g~ 25 (352)
T PRK10084 1 MKILVTGGAGFIGSAVVRHIINNTQ 25 (352)
T ss_pred CeEEEECCCcHHhHHHHHHHHHhCC
Confidence 58999997 9999999999998874
No 453
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=36.59 E-value=1.7e+02 Score=26.82 Aligned_cols=38 Identities=18% Similarity=0.305 Sum_probs=27.3
Q ss_pred CCCeEEEEee-CcchHHHHHHHHHcCCCceEEEEEECCHHHH
Q 014946 57 ETAKIKVVGV-GGGGNNAVNRMIGSGLQGVDFYAINTDSQAL 97 (415)
Q Consensus 57 ~~~~i~vIGv-GgaG~niv~~l~~~~~~~v~~iainTD~~~L 97 (415)
+..++.|.|. |+-|..++..+.+.|. +.+.++-+...+
T Consensus 4 ~~~~vlItGa~g~iG~~~a~~l~~~G~---~V~~~~r~~~~~ 42 (238)
T PRK05786 4 KGKKVAIIGVSEGLGYAVAYFALKEGA---QVCINSRNENKL 42 (238)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCC---EEEEEeCCHHHH
Confidence 3568999998 5689999999988875 345555555544
No 454
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=36.55 E-value=41 Score=35.62 Aligned_cols=29 Identities=24% Similarity=0.518 Sum_probs=25.2
Q ss_pred CCCCCCeEEEEeeCcchHHHHHHHHHcCC
Q 014946 54 APMETAKIKVVGVGGGGNNAVNRMIGSGL 82 (415)
Q Consensus 54 ~~~~~~~i~vIGvGgaG~niv~~l~~~~~ 82 (415)
++....+|+|||-|.+|..++.+|.+.|+
T Consensus 6 ~~~~~~~VaIIGAG~aGL~aA~~l~~~G~ 34 (461)
T PLN02172 6 NPINSQHVAVIGAGAAGLVAARELRREGH 34 (461)
T ss_pred cCCCCCCEEEECCcHHHHHHHHHHHhcCC
Confidence 35567889999999999999999998875
No 455
>PRK08251 short chain dehydrogenase; Provisional
Probab=36.51 E-value=2e+02 Score=26.51 Aligned_cols=83 Identities=20% Similarity=0.246 Sum_probs=49.9
Q ss_pred CeEEEEe-eCcchHHHHHHHHHcCCCceEEEEEECCHHHHhcCCC-------CCCeeccccccccCCCCCCchhhHHHHH
Q 014946 59 AKIKVVG-VGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSAA-------ENPLQIGDLLTRGLGTGGNPLLGEQAAE 130 (415)
Q Consensus 59 ~~i~vIG-vGgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~~~-------~~ki~ig~~~t~G~GaG~n~~~G~~~ae 130 (415)
.++.|.| -|+-|..++.+|.+.|. +.+++.-+...++.... ..++.+-. .|.. -.+..+
T Consensus 3 k~vlItGas~giG~~la~~l~~~g~---~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~---------~D~~-~~~~~~ 69 (248)
T PRK08251 3 QKILITGASSGLGAGMAREFAAKGR---DLALCARRTDRLEELKAELLARYPGIKVAVAA---------LDVN-DHDQVF 69 (248)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHHHhhCCCceEEEEE---------cCCC-CHHHHH
Confidence 4577887 67788899999998873 46666665554433211 11121110 0111 123445
Q ss_pred HHHHHHHHHhcCCCEEEEeccCCC
Q 014946 131 ESKEVIANALKGSDLVFITAGMGG 154 (415)
Q Consensus 131 e~~e~I~~~le~~D~~~I~agLGG 154 (415)
...+++.+.+..+|.++..+|.+.
T Consensus 70 ~~~~~~~~~~~~id~vi~~ag~~~ 93 (248)
T PRK08251 70 EVFAEFRDELGGLDRVIVNAGIGK 93 (248)
T ss_pred HHHHHHHHHcCCCCEEEECCCcCC
Confidence 566677777788999999888754
No 456
>PHA02518 ParA-like protein; Provisional
Probab=36.47 E-value=2.5e+02 Score=25.36 Aligned_cols=27 Identities=22% Similarity=0.489 Sum_probs=16.9
Q ss_pred CcchHHH-----HHHHHHcCCCceEEEEEECCHHH
Q 014946 67 GGGGNNA-----VNRMIGSGLQGVDFYAINTDSQA 96 (415)
Q Consensus 67 GgaG~ni-----v~~l~~~~~~~v~~iainTD~~~ 96 (415)
||.|-.. +-.|.+.| .+.+.||.|+|.
T Consensus 10 GGvGKTT~a~~la~~la~~g---~~vlliD~D~q~ 41 (211)
T PHA02518 10 GGAGKTTVATNLASWLHADG---HKVLLVDLDPQG 41 (211)
T ss_pred CCCCHHHHHHHHHHHHHhCC---CeEEEEeCCCCC
Confidence 5566533 33344444 568999999884
No 457
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=36.47 E-value=53 Score=32.40 Aligned_cols=35 Identities=20% Similarity=0.362 Sum_probs=26.9
Q ss_pred CCCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECC
Q 014946 57 ETAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTD 93 (415)
Q Consensus 57 ~~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD 93 (415)
...++.|+|-||+|-.|+-.|.+.|...+. .+|-+
T Consensus 125 ~~k~vlI~GAGGagrAia~~La~~G~~~V~--I~~R~ 159 (289)
T PRK12548 125 KGKKLTVIGAGGAATAIQVQCALDGAKEIT--IFNIK 159 (289)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEE--EEeCC
Confidence 456799999999999999999988865443 44544
No 458
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=36.40 E-value=1.6e+02 Score=28.25 Aligned_cols=36 Identities=14% Similarity=0.168 Sum_probs=28.8
Q ss_pred CCCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECC
Q 014946 57 ETAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTD 93 (415)
Q Consensus 57 ~~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD 93 (415)
++.+++|||-|..+.+=+..|++.|.. +..++-+..
T Consensus 24 ~~~~VLVVGGG~VA~RK~~~Ll~~gA~-VtVVap~i~ 59 (223)
T PRK05562 24 NKIKVLIIGGGKAAFIKGKTFLKKGCY-VYILSKKFS 59 (223)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCE-EEEEcCCCC
Confidence 467899999999999989999998854 666665553
No 459
>PLN02649 glucose-6-phosphate isomerase
Probab=36.38 E-value=1.2e+02 Score=33.29 Aligned_cols=41 Identities=20% Similarity=0.366 Sum_probs=25.6
Q ss_pred CeEEEEeeCc--chHHHHHHHHHcCCC------ceEEEE-EECCHHHHhc
Q 014946 59 AKIKVVGVGG--GGNNAVNRMIGSGLQ------GVDFYA-INTDSQALLQ 99 (415)
Q Consensus 59 ~~i~vIGvGg--aG~niv~~l~~~~~~------~v~~ia-inTD~~~L~~ 99 (415)
-.|.+||||| -|-.++-..+..... +.+..+ =|+|...+..
T Consensus 148 ~~VV~IGIGGS~LGp~~v~~AL~~~~~~~~~~~~~~~~fv~NvDp~~~~~ 197 (560)
T PLN02649 148 TNVVSIGIGGSFLGPLFVHEALATDPEALKSAKGRKLRFLANVDPVDIAR 197 (560)
T ss_pred ceEEEEecCcchHHHHHHHHHHhhhccccccccCCcEEEEeCCCHHHHHH
Confidence 4699999999 788887665432111 112333 4779887654
No 460
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=36.33 E-value=1.3e+02 Score=27.34 Aligned_cols=55 Identities=25% Similarity=0.293 Sum_probs=36.5
Q ss_pred cCCCEEEEeccCCCCccCChHHHHHHHHHHhCCceEEEEecCCCCchhhhHHHHHHHHHHHHhhCCEEEEEeCc
Q 014946 141 KGSDLVFITAGMGGGTGSGAAPVVAQIAKEAGYLTVGVVTYPFSFEGRKRSSQALEAIERLQKNVDTLIVIPND 214 (415)
Q Consensus 141 e~~D~~~I~agLGGGTGSG~apvia~~ake~g~~tvavvtlP~~~Eg~~r~~nA~~~l~~L~e~~D~viv~dNd 214 (415)
+..|.|.++.| -+-+.|++.+ +||.|+.++++.+-+... ..|++.||..|.++-+
T Consensus 104 ~~iD~~vLvSg-----D~DF~~Lv~~-lre~G~~V~v~g~~~~ts-------------~~L~~acd~FI~L~~~ 158 (160)
T TIGR00288 104 PNIDAVALVTR-----DADFLPVINK-AKENGKETIVIGAEPGFS-------------TALQNSADIAIILGEE 158 (160)
T ss_pred CCCCEEEEEec-----cHhHHHHHHH-HHHCCCEEEEEeCCCCCh-------------HHHHHhcCeEEeCCCC
Confidence 57899988855 2356776655 678899998887522222 2467788877766543
No 461
>KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion]
Probab=36.25 E-value=1e+02 Score=31.01 Aligned_cols=112 Identities=23% Similarity=0.323 Sum_probs=62.5
Q ss_pred CCCCCCeEEEEeeCcchHHHHHHHHHcCCCceEEEEE----EC--CHHHHhcCCCCCCeeccccccccCCCCCCchhhHH
Q 014946 54 APMETAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAI----NT--DSQALLQSAAENPLQIGDLLTRGLGTGGNPLLGEQ 127 (415)
Q Consensus 54 ~~~~~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iai----nT--D~~~L~~~~~~~ki~ig~~~t~G~GaG~n~~~G~~ 127 (415)
...+..|+.|+|-+|+=+.=..-|++.... +.-++. || =..+|.+++...++ .|+
T Consensus 24 ~~~~~~KVAvlGAaGGIGQPLSLLlK~np~-Vs~LaLYDi~~~~GVaaDlSHI~T~s~V-------~g~----------- 84 (345)
T KOG1494|consen 24 GSQRGLKVAVLGAAGGIGQPLSLLLKLNPL-VSELALYDIANTPGVAADLSHINTNSSV-------VGF----------- 84 (345)
T ss_pred cccCcceEEEEecCCccCccHHHHHhcCcc-cceeeeeecccCCcccccccccCCCCce-------ecc-----------
Confidence 344578999999887766667777776532 222221 22 11223333222111 111
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeccCCCCccC----------ChHHHHHHHHHHh-CCceEEEEecCCCCch
Q 014946 128 AAEESKEVIANALKGSDLVFITAGMGGGTGS----------GAAPVVAQIAKEA-GYLTVGVVTYPFSFEG 187 (415)
Q Consensus 128 ~aee~~e~I~~~le~~D~~~I~agLGGGTGS----------G~apvia~~ake~-g~~tvavvtlP~~~Eg 187 (415)
.-.+++.+.|+++|.|+|-||+=---|- |+..-++....+. +.-.+.+++-|-.+.-
T Consensus 85 ---~g~~~L~~al~~advVvIPAGVPRKPGMTRDDLFn~NAgIv~~l~~aia~~cP~A~i~vIsNPVNstV 152 (345)
T KOG1494|consen 85 ---TGADGLENALKGADVVVIPAGVPRKPGMTRDDLFNINAGIVKTLAAAIAKCCPNALILVISNPVNSTV 152 (345)
T ss_pred ---CChhHHHHHhcCCCEEEecCCCCCCCCCcHHHhhhcchHHHHHHHHHHHhhCccceeEeecCcccccc
Confidence 0124788899999999999998765542 3333333322332 3345777788876543
No 462
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=36.22 E-value=54 Score=35.22 Aligned_cols=39 Identities=18% Similarity=0.258 Sum_probs=33.2
Q ss_pred CCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHHhc
Q 014946 58 TAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQ 99 (415)
Q Consensus 58 ~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L~~ 99 (415)
-.+|.|||.|--|..|+..+...|. +.+..|.+.+.++.
T Consensus 7 i~~V~VIGaG~MG~gIA~~la~aG~---~V~l~D~~~e~l~~ 45 (507)
T PRK08268 7 IATVAVIGAGAMGAGIAQVAAQAGH---TVLLYDARAGAAAA 45 (507)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC---eEEEEeCCHHHHHH
Confidence 3579999999999999999998875 46788998888765
No 463
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=35.78 E-value=58 Score=34.47 Aligned_cols=38 Identities=16% Similarity=0.268 Sum_probs=29.1
Q ss_pred CCCCCCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCH
Q 014946 54 APMETAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDS 94 (415)
Q Consensus 54 ~~~~~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~ 94 (415)
++-...|+.|+|+|+.|-.++..|.+.|. .....|.+.
T Consensus 11 ~~~~~~~v~v~G~G~sG~a~a~~L~~~G~---~V~~~D~~~ 48 (473)
T PRK00141 11 PQELSGRVLVAGAGVSGRGIAAMLSELGC---DVVVADDNE 48 (473)
T ss_pred ccccCCeEEEEccCHHHHHHHHHHHHCCC---EEEEECCCh
Confidence 44456789999999999999999988885 355666543
No 464
>PRK07814 short chain dehydrogenase; Provisional
Probab=35.54 E-value=1.8e+02 Score=27.45 Aligned_cols=84 Identities=17% Similarity=0.165 Sum_probs=49.0
Q ss_pred CCCCeEEEEeeC-cchHHHHHHHHHcCCCceEEEEEECCHHHHhcCCC-----CCCeeccccccccCCCCCCchhhHHHH
Q 014946 56 METAKIKVVGVG-GGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSAA-----ENPLQIGDLLTRGLGTGGNPLLGEQAA 129 (415)
Q Consensus 56 ~~~~~i~vIGvG-gaG~niv~~l~~~~~~~v~~iainTD~~~L~~~~~-----~~ki~ig~~~t~G~GaG~n~~~G~~~a 129 (415)
+...+++|.|.+ +-|..++.+|.+.|. +.+.++.+...++.... ..++.+=. .|.. -.+..
T Consensus 8 ~~~~~vlItGasggIG~~~a~~l~~~G~---~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~---------~D~~-~~~~~ 74 (263)
T PRK07814 8 LDDQVAVVTGAGRGLGAAIALAFAEAGA---DVLIAARTESQLDEVAEQIRAAGRRAHVVA---------ADLA-HPEAT 74 (263)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHHhcCCcEEEEE---------ccCC-CHHHH
Confidence 456789999976 588899999998774 45667766655543211 11111100 0111 12334
Q ss_pred HHHHHHHHHHhcCCCEEEEeccC
Q 014946 130 EESKEVIANALKGSDLVFITAGM 152 (415)
Q Consensus 130 ee~~e~I~~~le~~D~~~I~agL 152 (415)
++..+++.+.+...|+++-++|.
T Consensus 75 ~~~~~~~~~~~~~id~vi~~Ag~ 97 (263)
T PRK07814 75 AGLAGQAVEAFGRLDIVVNNVGG 97 (263)
T ss_pred HHHHHHHHHHcCCCCEEEECCCC
Confidence 44556666666788988777764
No 465
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=35.50 E-value=2.6e+02 Score=23.18 Aligned_cols=55 Identities=22% Similarity=0.269 Sum_probs=34.2
Q ss_pred CCEEEEeccCCCCccCChHHHHHHHHHHhCCceEEEEecCCCCchhhhHHHHHHHHHHHHhhCCEEEEEeCch
Q 014946 143 SDLVFITAGMGGGTGSGAAPVVAQIAKEAGYLTVGVVTYPFSFEGRKRSSQALEAIERLQKNVDTLIVIPNDR 215 (415)
Q Consensus 143 ~D~~~I~agLGGGTGSG~apvia~~ake~g~~tvavvtlP~~~Eg~~r~~nA~~~l~~L~e~~D~viv~dNd~ 215 (415)
-|+++++ +..|-|- -.--.++.+|+.+..++++.-.|.. .|.+.+|.++......
T Consensus 48 ~d~vi~i-S~sG~t~--~~~~~~~~a~~~g~~vi~iT~~~~s---------------~la~~ad~~l~~~~~~ 102 (128)
T cd05014 48 GDVVIAI-SNSGETD--ELLNLLPHLKRRGAPIIAITGNPNS---------------TLAKLSDVVLDLPVEE 102 (128)
T ss_pred CCEEEEE-eCCCCCH--HHHHHHHHHHHCCCeEEEEeCCCCC---------------chhhhCCEEEECCCCc
Confidence 3555444 6666541 1122567788889999988655442 2556899888876443
No 466
>PRK06138 short chain dehydrogenase; Provisional
Probab=35.49 E-value=1.2e+02 Score=28.01 Aligned_cols=84 Identities=21% Similarity=0.270 Sum_probs=47.7
Q ss_pred CCCeEEEEee-CcchHHHHHHHHHcCCCceEEEEEECCHHHHhcCCC----CCCeeccccccccCCCCCCchhhHHHHHH
Q 014946 57 ETAKIKVVGV-GGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSAA----ENPLQIGDLLTRGLGTGGNPLLGEQAAEE 131 (415)
Q Consensus 57 ~~~~i~vIGv-GgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~~~----~~ki~ig~~~t~G~GaG~n~~~G~~~aee 131 (415)
.+.++.|.|. |+-|..++.+|.+.|. +.+.+..+.+.+..... ..++.+= .+ .. .|+ +..++
T Consensus 4 ~~k~~lItG~sg~iG~~la~~l~~~G~---~v~~~~r~~~~~~~~~~~~~~~~~~~~~----~~-D~-~~~----~~~~~ 70 (252)
T PRK06138 4 AGRVAIVTGAGSGIGRATAKLFAREGA---RVVVADRDAEAAERVAAAIAAGGRAFAR----QG-DV-GSA----EAVEA 70 (252)
T ss_pred CCcEEEEeCCCchHHHHHHHHHHHCCC---eEEEecCCHHHHHHHHHHHhcCCeEEEE----Ec-CC-CCH----HHHHH
Confidence 3457888887 7889999999998764 45666555544432111 1111100 00 00 122 23445
Q ss_pred HHHHHHHHhcCCCEEEEeccCC
Q 014946 132 SKEVIANALKGSDLVFITAGMG 153 (415)
Q Consensus 132 ~~e~I~~~le~~D~~~I~agLG 153 (415)
..+++.+.+...|.++-++|..
T Consensus 71 ~~~~i~~~~~~id~vi~~ag~~ 92 (252)
T PRK06138 71 LVDFVAARWGRLDVLVNNAGFG 92 (252)
T ss_pred HHHHHHHHcCCCCEEEECCCCC
Confidence 5566666667899888777643
No 467
>PRK03868 glucose-6-phosphate isomerase; Provisional
Probab=35.36 E-value=1.1e+02 Score=32.04 Aligned_cols=41 Identities=24% Similarity=0.379 Sum_probs=26.0
Q ss_pred CeEEEEeeCc--chHHHHHHHHHcCC-CceEEE-EEECCHHHHhc
Q 014946 59 AKIKVVGVGG--GGNNAVNRMIGSGL-QGVDFY-AINTDSQALLQ 99 (415)
Q Consensus 59 ~~i~vIGvGg--aG~niv~~l~~~~~-~~v~~i-ainTD~~~L~~ 99 (415)
-.|.+||+|| .|..++..++.... ...++. .-|+|+..+..
T Consensus 59 ~~VV~iGIGGS~LG~~~l~~al~~~~~~~~~i~f~~n~dp~~~~~ 103 (410)
T PRK03868 59 KNIVVIGIGGSSLGVKAIYSFLKNEKNNKKELHFLENTDPISINK 103 (410)
T ss_pred CEEEEEecChHHHHHHHHHHHHHhhccCCCcEEEEecCCHHHHHH
Confidence 5699999999 67777777653211 122333 46789877654
No 468
>PRK06523 short chain dehydrogenase; Provisional
Probab=35.21 E-value=3.3e+02 Score=25.32 Aligned_cols=80 Identities=16% Similarity=0.251 Sum_probs=47.5
Q ss_pred CCCCeEEEEee-CcchHHHHHHHHHcCCCceEEEEEECCHHHHhcCCCCCCee-ccccccccCCCCCCchhhHHHHHHHH
Q 014946 56 METAKIKVVGV-GGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSAAENPLQ-IGDLLTRGLGTGGNPLLGEQAAEESK 133 (415)
Q Consensus 56 ~~~~~i~vIGv-GgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~~~~~ki~-ig~~~t~G~GaG~n~~~G~~~aee~~ 133 (415)
+.+.+++|.|. |+-|..++.+|.+.|. +.++++-+..... ..++. +--.+ .|+ +..+...
T Consensus 7 ~~~k~vlItGas~gIG~~ia~~l~~~G~---~v~~~~r~~~~~~----~~~~~~~~~D~-------~~~----~~~~~~~ 68 (260)
T PRK06523 7 LAGKRALVTGGTKGIGAATVARLLEAGA---RVVTTARSRPDDL----PEGVEFVAADL-------TTA----EGCAAVA 68 (260)
T ss_pred CCCCEEEEECCCCchhHHHHHHHHHCCC---EEEEEeCChhhhc----CCceeEEecCC-------CCH----HHHHHHH
Confidence 44578999996 6889999999998874 4566655543321 11111 10000 112 2334445
Q ss_pred HHHHHHhcCCCEEEEeccCC
Q 014946 134 EVIANALKGSDLVFITAGMG 153 (415)
Q Consensus 134 e~I~~~le~~D~~~I~agLG 153 (415)
+++.+.....|.++-.+|..
T Consensus 69 ~~~~~~~~~id~vi~~ag~~ 88 (260)
T PRK06523 69 RAVLERLGGVDILVHVLGGS 88 (260)
T ss_pred HHHHHHcCCCCEEEECCccc
Confidence 56666677889988887753
No 469
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=34.80 E-value=1.5e+02 Score=23.94 Aligned_cols=39 Identities=15% Similarity=0.345 Sum_probs=27.1
Q ss_pred CCCeEEEEeeCcchHHHHHHHHHc-CCCceEEEEEECCHHHH
Q 014946 57 ETAKIKVVGVGGGGNNAVNRMIGS-GLQGVDFYAINTDSQAL 97 (415)
Q Consensus 57 ~~~~i~vIGvGgaG~niv~~l~~~-~~~~v~~iainTD~~~L 97 (415)
+.-++.|+|+|+.|..++..+... +.. +. .++|+|...+
T Consensus 2 k~~~v~ivGag~~G~a~~~~~~~~~g~~-i~-~~~dv~~~~~ 41 (96)
T PF02629_consen 2 KKTNVIIVGAGNLGRALLYNGFSMRGFG-IV-AVFDVDPEKI 41 (96)
T ss_dssp TTEEEEEETTTSHHHHHHHHHHHHHCEC-EE-EEEEECTTTT
T ss_pred CCCeEEEECCCCcHHHHHHhHHHHcCCC-CE-EEEEcCCCcc
Confidence 456899999999999988555433 432 22 6778887644
No 470
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=34.72 E-value=54 Score=34.52 Aligned_cols=31 Identities=16% Similarity=0.358 Sum_probs=26.8
Q ss_pred CCCCCCeEEEEeeCcchHHHHHHHHHcCCCc
Q 014946 54 APMETAKIKVVGVGGGGNNAVNRMIGSGLQG 84 (415)
Q Consensus 54 ~~~~~~~i~vIGvGgaG~niv~~l~~~~~~~ 84 (415)
..+...+++|||-|++|--++-+|.+.|+.+
T Consensus 4 ~~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~ 34 (443)
T COG2072 4 GVATHTDVAIIGAGQSGLAAAYALKQAGVPD 34 (443)
T ss_pred CcCCcccEEEECCCHHHHHHHHHHHHcCCCc
Confidence 3456788999999999999999999998764
No 471
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=34.59 E-value=68 Score=31.55 Aligned_cols=39 Identities=28% Similarity=0.424 Sum_probs=30.4
Q ss_pred CCCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHH
Q 014946 57 ETAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQAL 97 (415)
Q Consensus 57 ~~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L 97 (415)
...+++|||-||+|-.++-.|.+.|.. +...+|-+.+..
T Consensus 124 ~~k~vlvlGaGGaarai~~aL~~~G~~--~i~I~nRt~~ka 162 (282)
T TIGR01809 124 AGFRGLVIGAGGTSRAAVYALASLGVT--DITVINRNPDKL 162 (282)
T ss_pred CCceEEEEcCcHHHHHHHHHHHHcCCC--eEEEEeCCHHHH
Confidence 456899999999999999999998865 345667665433
No 472
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=34.55 E-value=2.3e+02 Score=29.60 Aligned_cols=89 Identities=19% Similarity=0.369 Sum_probs=55.2
Q ss_pred CCCCeEEEEeeCcchHHHHHHHHHcCCCceEEEEE---ECCHHHHhcCCCCCCeeccccccccCCCCCCchhhHHHHHHH
Q 014946 56 METAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAI---NTDSQALLQSAAENPLQIGDLLTRGLGTGGNPLLGEQAAEES 132 (415)
Q Consensus 56 ~~~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iai---nTD~~~L~~~~~~~ki~ig~~~t~G~GaG~n~~~G~~~aee~ 132 (415)
....+|.|+|=|+.|..+..+|.+.|+. +..=.+ |+|.+.=.....+. +.-.+ . ..+.++.
T Consensus 265 ~~~~~v~v~~~~~~~~~~~~~L~~~g~~-v~~g~l~~~d~d~~~a~~l~~~~-~~~~p-f-------------~~i~~~~ 328 (402)
T PRK09536 265 AADTRVHVVGGGQPAARAVSRLVAAGAS-VSVGPVPEGDTAAETAARVGCEA-VTVPP-F-------------KPIEDST 328 (402)
T ss_pred CCCceEEEECCCCcHHHHHHHHHHCCCe-EEEecCcCcchhHHHHHHcCCCE-EeeCC-C-------------CCCCHHH
Confidence 4456799999999999999999999865 443333 44555332222111 10000 0 0112566
Q ss_pred HHHHHHHhcCCCEEEEeccCCCCccCChH
Q 014946 133 KEVIANALKGSDLVFITAGMGGGTGSGAA 161 (415)
Q Consensus 133 ~e~I~~~le~~D~~~I~agLGGGTGSG~a 161 (415)
.++..+.++.||.+++ +++--|.++++.
T Consensus 329 ~~~a~~~~~~~~~vi~-~~~~~g~~~~~~ 356 (402)
T PRK09536 329 RAEATDLIIAADAVVA-AGVAAAARSGVI 356 (402)
T ss_pred HHHHHHHHHhCCEEEE-CCCccCCCCCch
Confidence 6777888889998765 667777777754
No 473
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=34.53 E-value=1.1e+02 Score=30.67 Aligned_cols=47 Identities=23% Similarity=0.366 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeccCCCCccCChHHHHHHHHHHhCCceEEE
Q 014946 128 AAEESKEVIANALKGSDLVFITAGMGGGTGSGAAPVVAQIAKEAGYLTVGV 178 (415)
Q Consensus 128 ~aee~~e~I~~~le~~D~~~I~agLGGGTGSG~apvia~~ake~g~~tvav 178 (415)
+..+-++.++++.+.+|+++|+ ||.-|+=+-.|++++++++..+|-|
T Consensus 196 aT~~RQ~a~~~La~~vD~miVV----Gg~~SsNT~kL~~i~~~~~~~t~~I 242 (298)
T PRK01045 196 ATQNRQEAVKELAPQADLVIVV----GSKNSSNSNRLREVAEEAGAPAYLI 242 (298)
T ss_pred hhHHHHHHHHHHHhhCCEEEEE----CCCCCccHHHHHHHHHHHCCCEEEE
Confidence 3445566678888899988887 5556777888999999988776654
No 474
>PRK06139 short chain dehydrogenase; Provisional
Probab=34.50 E-value=1.7e+02 Score=29.35 Aligned_cols=85 Identities=16% Similarity=0.186 Sum_probs=50.8
Q ss_pred CCCCeEEEEee-CcchHHHHHHHHHcCCCceEEEEEECCHHHHhcCCCC-----CCeeccccccccCCCCCCchhhHHHH
Q 014946 56 METAKIKVVGV-GGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSAAE-----NPLQIGDLLTRGLGTGGNPLLGEQAA 129 (415)
Q Consensus 56 ~~~~~i~vIGv-GgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~~~~-----~ki~ig~~~t~G~GaG~n~~~G~~~a 129 (415)
.....++|.|- ||.|..++.+|.+.|. +.+.+.-+...|+..... .++..=. .|.. -.+..
T Consensus 5 l~~k~vlITGAs~GIG~aia~~la~~G~---~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~---------~Dv~-d~~~v 71 (330)
T PRK06139 5 LHGAVVVITGASSGIGQATAEAFARRGA---RLVLAARDEEALQAVAEECRALGAEVLVVP---------TDVT-DADQV 71 (330)
T ss_pred CCCCEEEEcCCCCHHHHHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcCCcEEEEE---------eeCC-CHHHH
Confidence 34567889998 7889999999998874 456666666666532110 1111000 0111 12334
Q ss_pred HHHHHHHHHHhcCCCEEEEeccCC
Q 014946 130 EESKEVIANALKGSDLVFITAGMG 153 (415)
Q Consensus 130 ee~~e~I~~~le~~D~~~I~agLG 153 (415)
++..+++.+.....|.++-.+|.+
T Consensus 72 ~~~~~~~~~~~g~iD~lVnnAG~~ 95 (330)
T PRK06139 72 KALATQAASFGGRIDVWVNNVGVG 95 (330)
T ss_pred HHHHHHHHHhcCCCCEEEECCCcC
Confidence 455566666667789998888764
No 475
>PLN02650 dihydroflavonol-4-reductase
Probab=34.14 E-value=1.2e+02 Score=30.05 Aligned_cols=26 Identities=27% Similarity=0.373 Sum_probs=22.8
Q ss_pred CCCeEEEEee-CcchHHHHHHHHHcCC
Q 014946 57 ETAKIKVVGV-GGGGNNAVNRMIGSGL 82 (415)
Q Consensus 57 ~~~~i~vIGv-GgaG~niv~~l~~~~~ 82 (415)
++++|+|.|. |..|.+++.+|.+.|.
T Consensus 4 ~~k~iLVTGatGfIGs~l~~~L~~~G~ 30 (351)
T PLN02650 4 QKETVCVTGASGFIGSWLVMRLLERGY 30 (351)
T ss_pred CCCEEEEeCCcHHHHHHHHHHHHHCCC
Confidence 4678999996 8999999999999874
No 476
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=34.11 E-value=63 Score=30.68 Aligned_cols=38 Identities=18% Similarity=0.307 Sum_probs=29.5
Q ss_pred CCCCCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCH
Q 014946 55 PMETAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDS 94 (415)
Q Consensus 55 ~~~~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~ 94 (415)
....+++.|.|+|..|..++..|.+.|.. -..+.|+|.
T Consensus 20 ~l~g~~vaIqGfGnVG~~~a~~L~~~G~~--vV~vsD~~g 57 (217)
T cd05211 20 SLEGLTVAVQGLGNVGWGLAKKLAEEGGK--VLAVSDPDG 57 (217)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHcCCE--EEEEEcCCC
Confidence 44679999999999999999999998743 233456654
No 477
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=34.08 E-value=1.5e+02 Score=30.09 Aligned_cols=34 Identities=15% Similarity=0.304 Sum_probs=24.0
Q ss_pred eEEEEe-eCcchHHHHHHHHHcCCCceEEEEEECC
Q 014946 60 KIKVVG-VGGGGNNAVNRMIGSGLQGVDFYAINTD 93 (415)
Q Consensus 60 ~i~vIG-vGgaG~niv~~l~~~~~~~v~~iainTD 93 (415)
||.||| -|..|..+++.|.+++.+.++...+-.+
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~ 35 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASD 35 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEecc
Confidence 588999 6778888888888876665554444343
No 478
>PRK06181 short chain dehydrogenase; Provisional
Probab=34.07 E-value=2.2e+02 Score=26.56 Aligned_cols=82 Identities=17% Similarity=0.224 Sum_probs=46.7
Q ss_pred CeEEEEee-CcchHHHHHHHHHcCCCceEEEEEECCHHHHhcCC-----CCCCeeccccccccCCCCCCchhhHHHHHHH
Q 014946 59 AKIKVVGV-GGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSA-----AENPLQIGDLLTRGLGTGGNPLLGEQAAEES 132 (415)
Q Consensus 59 ~~i~vIGv-GgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~~-----~~~ki~ig~~~t~G~GaG~n~~~G~~~aee~ 132 (415)
.+++|.|. |+.|..++.+|.+.|. +.++++.+...++... ...++.+ .. .|.. -.+..++.
T Consensus 2 ~~vlVtGasg~iG~~la~~l~~~g~---~Vi~~~r~~~~~~~~~~~l~~~~~~~~~----~~-----~Dl~-~~~~~~~~ 68 (263)
T PRK06181 2 KVVIITGASEGIGRALAVRLARAGA---QLVLAARNETRLASLAQELADHGGEALV----VP-----TDVS-DAEACERL 68 (263)
T ss_pred CEEEEecCCcHHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHHhcCCcEEE----EE-----ccCC-CHHHHHHH
Confidence 46888988 8889999999988774 5677777655443211 0111110 00 0100 12334445
Q ss_pred HHHHHHHhcCCCEEEEeccCC
Q 014946 133 KEVIANALKGSDLVFITAGMG 153 (415)
Q Consensus 133 ~e~I~~~le~~D~~~I~agLG 153 (415)
.+++.+.+...|.++-++|..
T Consensus 69 ~~~~~~~~~~id~vi~~ag~~ 89 (263)
T PRK06181 69 IEAAVARFGGIDILVNNAGIT 89 (263)
T ss_pred HHHHHHHcCCCCEEEECCCcc
Confidence 555655566789888777543
No 479
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=34.06 E-value=1.7e+02 Score=31.60 Aligned_cols=80 Identities=16% Similarity=0.221 Sum_probs=49.8
Q ss_pred HHHHHHHHHHhcCCCEEEEeccCCCCccCChHHHHHHHHHHhCCceEEEEecCCCCchh---hhHHHHHHHHHHHHhhCC
Q 014946 130 EESKEVIANALKGSDLVFITAGMGGGTGSGAAPVVAQIAKEAGYLTVGVVTYPFSFEGR---KRSSQALEAIERLQKNVD 206 (415)
Q Consensus 130 ee~~e~I~~~le~~D~~~I~agLGGGTGSG~apvia~~ake~g~~tvavvtlP~~~Eg~---~r~~nA~~~l~~L~e~~D 206 (415)
.+..+++.++|.++.--+|++|-|.- -+|+...+.++++..+++++ +.+.. -|. ..+++.-...+.+.+.+|
T Consensus 200 ~~~l~~~~~~L~~AkrPvIi~G~g~~-~~~a~~~l~~lae~l~iPV~---tt~~g-kg~~~e~hpl~~G~~~~~~l~~aD 274 (569)
T PRK09259 200 PEAVDRALDLLKKAKRPLIILGKGAA-YAQADEQIREFVEKTGIPFL---PMSMA-KGLLPDTHPQSAAAARSLALANAD 274 (569)
T ss_pred HHHHHHHHHHHHhCCCCEEEECcCcc-ccChHHHHHHHHHHHCCCEE---ecccc-cccCCCCChhhhhHHHHHHHhcCC
Confidence 34566777777788866666664443 45788889999999998876 22211 010 112233233345567899
Q ss_pred EEEEEeCc
Q 014946 207 TLIVIPND 214 (415)
Q Consensus 207 ~viv~dNd 214 (415)
.+|++-..
T Consensus 275 lvl~lG~~ 282 (569)
T PRK09259 275 VVLLVGAR 282 (569)
T ss_pred EEEEeCCC
Confidence 99998743
No 480
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=33.82 E-value=61 Score=31.64 Aligned_cols=35 Identities=11% Similarity=0.250 Sum_probs=27.2
Q ss_pred CeEEEEeeCcchHHHHHHHHHcC-CCceEEEEEECC
Q 014946 59 AKIKVVGVGGGGNNAVNRMIGSG-LQGVDFYAINTD 93 (415)
Q Consensus 59 ~~i~vIGvGgaG~niv~~l~~~~-~~~v~~iainTD 93 (415)
++|.+||.|.-|..++..|.+.+ +...+.++++-+
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~ 37 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSS 37 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCC
Confidence 57999999999999999999887 333455666643
No 481
>PRK08324 short chain dehydrogenase; Validated
Probab=33.72 E-value=1.5e+02 Score=33.03 Aligned_cols=86 Identities=27% Similarity=0.305 Sum_probs=51.9
Q ss_pred CCCCCeEEEEee-CcchHHHHHHHHHcCCCceEEEEEECCHHHHhcCCCC----CCeeccccccccCCCCCCchhhHHHH
Q 014946 55 PMETAKIKVVGV-GGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSAAE----NPLQIGDLLTRGLGTGGNPLLGEQAA 129 (415)
Q Consensus 55 ~~~~~~i~vIGv-GgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~~~~----~ki~ig~~~t~G~GaG~n~~~G~~~a 129 (415)
+..+.+++|.|- |+.|..++.+|.+.|. ..++++-+...+...... .++..= -.|.. -.+..
T Consensus 419 ~l~gk~vLVTGasggIG~~la~~L~~~Ga---~Vvl~~r~~~~~~~~~~~l~~~~~v~~v---------~~Dvt-d~~~v 485 (681)
T PRK08324 419 PLAGKVALVTGAAGGIGKATAKRLAAEGA---CVVLADLDEEAAEAAAAELGGPDRALGV---------ACDVT-DEAAV 485 (681)
T ss_pred CCCCCEEEEecCCCHHHHHHHHHHHHCcC---EEEEEeCCHHHHHHHHHHHhccCcEEEE---------EecCC-CHHHH
Confidence 345678999995 9999999999998874 467777776655432110 111100 00111 11233
Q ss_pred HHHHHHHHHHhcCCCEEEEeccCC
Q 014946 130 EESKEVIANALKGSDLVFITAGMG 153 (415)
Q Consensus 130 ee~~e~I~~~le~~D~~~I~agLG 153 (415)
++..+++.+...+.|.++-++|..
T Consensus 486 ~~~~~~~~~~~g~iDvvI~~AG~~ 509 (681)
T PRK08324 486 QAAFEEAALAFGGVDIVVSNAGIA 509 (681)
T ss_pred HHHHHHHHHHcCCCCEEEECCCCC
Confidence 444555666666899999888764
No 482
>PRK06198 short chain dehydrogenase; Provisional
Probab=33.70 E-value=2.8e+02 Score=25.73 Aligned_cols=84 Identities=14% Similarity=0.129 Sum_probs=47.8
Q ss_pred CCCCeEEEEee-CcchHHHHHHHHHcCCCceEEEEEECCHHHHhcCC----C-CCCee-ccccccccCCCCCCchhhHHH
Q 014946 56 METAKIKVVGV-GGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSA----A-ENPLQ-IGDLLTRGLGTGGNPLLGEQA 128 (415)
Q Consensus 56 ~~~~~i~vIGv-GgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~~----~-~~ki~-ig~~~t~G~GaG~n~~~G~~~ 128 (415)
+...++.|+|. |+.|..++.+|.+.|.. ..++++.+...+.... . ..++. +--.+ .+ .+.
T Consensus 4 ~~~k~vlItGa~g~iG~~la~~l~~~G~~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~-------~~----~~~ 70 (260)
T PRK06198 4 LDGKVALVTGGTQGLGAAIARAFAERGAA--GLVICGRNAEKGEAQAAELEALGAKAVFVQADL-------SD----VED 70 (260)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHHCCCC--eEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccC-------CC----HHH
Confidence 44567899986 78899999999988743 1556666554443110 0 11111 10011 11 233
Q ss_pred HHHHHHHHHHHhcCCCEEEEeccC
Q 014946 129 AEESKEVIANALKGSDLVFITAGM 152 (415)
Q Consensus 129 aee~~e~I~~~le~~D~~~I~agL 152 (415)
.++..+.+.+.+..+|.++-++|.
T Consensus 71 ~~~~~~~~~~~~g~id~li~~ag~ 94 (260)
T PRK06198 71 CRRVVAAADEAFGRLDALVNAAGL 94 (260)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCc
Confidence 444555666666788998887764
No 483
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=33.52 E-value=2.1e+02 Score=33.66 Aligned_cols=40 Identities=23% Similarity=0.396 Sum_probs=29.2
Q ss_pred CCCCCeEEEEeeCcc-----------hHHHHHHHHHcCCCceEEEEEECCHHHH
Q 014946 55 PMETAKIKVVGVGGG-----------GNNAVNRMIGSGLQGVDFYAINTDSQAL 97 (415)
Q Consensus 55 ~~~~~~i~vIGvGga-----------G~niv~~l~~~~~~~v~~iainTD~~~L 97 (415)
+.+..||+|+|-|.. .-.++..+.+.|. +.+.+|.++...
T Consensus 551 ~~~~kkvlilG~G~~~ig~~~efdy~~v~~i~alk~~G~---~vi~v~~npetv 601 (1066)
T PRK05294 551 PSDRKKVLVLGSGPNRIGQGIEFDYCCVHAVLALREAGY---ETIMVNCNPETV 601 (1066)
T ss_pred cCCCceEEEECccccccccccccchhHHHHHHHHHHCCC---EEEEEeCCcccc
Confidence 446789999998862 3456777777664 588999988653
No 484
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=33.28 E-value=57 Score=34.20 Aligned_cols=33 Identities=21% Similarity=0.410 Sum_probs=24.9
Q ss_pred CCCeEEEEeeCcchHH-HHHHHHHcCCCceEEEEEEC
Q 014946 57 ETAKIKVVGVGGGGNN-AVNRMIGSGLQGVDFYAINT 92 (415)
Q Consensus 57 ~~~~i~vIGvGgaG~n-iv~~l~~~~~~~v~~iainT 92 (415)
+..+|.|||+|+.|.. ++..|.+.|. +..+.|.
T Consensus 6 ~~~~v~viG~G~sG~s~~a~~L~~~G~---~V~~~D~ 39 (461)
T PRK00421 6 RIKRIHFVGIGGIGMSGLAEVLLNLGY---KVSGSDL 39 (461)
T ss_pred CCCEEEEEEEchhhHHHHHHHHHhCCC---eEEEECC
Confidence 3467999999999999 5777777774 3556665
No 485
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=33.18 E-value=3.7e+02 Score=28.88 Aligned_cols=33 Identities=12% Similarity=0.248 Sum_probs=21.9
Q ss_pred CCCeE-EEEeeCcchHHHHHHHHHcCCCceEEEEEEC
Q 014946 57 ETAKI-KVVGVGGGGNNAVNRMIGSGLQGVDFYAINT 92 (415)
Q Consensus 57 ~~~~i-~vIGvGgaG~niv~~l~~~~~~~v~~iainT 92 (415)
.+..+ ..||++.---..++.|++.| ++++++|+
T Consensus 228 GrL~Vgaavg~~~~~~~~~~~l~~ag---~d~i~id~ 261 (495)
T PTZ00314 228 GQLLVGAAISTRPEDIERAAALIEAG---VDVLVVDS 261 (495)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHCC---CCEEEEec
Confidence 33444 45666554457788888876 56899997
No 486
>PRK05872 short chain dehydrogenase; Provisional
Probab=33.10 E-value=2.2e+02 Score=27.65 Aligned_cols=85 Identities=18% Similarity=0.259 Sum_probs=51.2
Q ss_pred CCCCeEEEEee-CcchHHHHHHHHHcCCCceEEEEEECCHHHHhcCC----CCCCeeccccccccCCCCCCchhhHHHHH
Q 014946 56 METAKIKVVGV-GGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSA----AENPLQIGDLLTRGLGTGGNPLLGEQAAE 130 (415)
Q Consensus 56 ~~~~~i~vIGv-GgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~~----~~~ki~ig~~~t~G~GaG~n~~~G~~~ae 130 (415)
..+.+++|.|- ||.|..++..|.+.|. +.+.++-+...++... ...++..=. .|.. -.+..+
T Consensus 7 l~gk~vlItGas~gIG~~ia~~l~~~G~---~V~~~~r~~~~l~~~~~~l~~~~~~~~~~---------~Dv~-d~~~v~ 73 (296)
T PRK05872 7 LAGKVVVVTGAARGIGAELARRLHARGA---KLALVDLEEAELAALAAELGGDDRVLTVV---------ADVT-DLAAMQ 73 (296)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHhcCCCcEEEEE---------ecCC-CHHHHH
Confidence 34567889986 7789999999988874 4566666766654321 111111100 1111 123345
Q ss_pred HHHHHHHHHhcCCCEEEEeccCC
Q 014946 131 ESKEVIANALKGSDLVFITAGMG 153 (415)
Q Consensus 131 e~~e~I~~~le~~D~~~I~agLG 153 (415)
+..+++.+.+...|.++-.+|..
T Consensus 74 ~~~~~~~~~~g~id~vI~nAG~~ 96 (296)
T PRK05872 74 AAAEEAVERFGGIDVVVANAGIA 96 (296)
T ss_pred HHHHHHHHHcCCCCEEEECCCcC
Confidence 55666767677889998888754
No 487
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=33.09 E-value=60 Score=28.95 Aligned_cols=39 Identities=23% Similarity=0.424 Sum_probs=29.0
Q ss_pred CeEEEEeeCcchHHHHHHHHHcCCCceEEEEEEC--CHHHHhc
Q 014946 59 AKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINT--DSQALLQ 99 (415)
Q Consensus 59 ~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainT--D~~~L~~ 99 (415)
+||.|+|+|..|..++..+.+. .+++.++++. |++.+..
T Consensus 1 ikv~I~G~GriGr~v~~~~~~~--~~~~lvai~d~~~~~~~a~ 41 (149)
T smart00846 1 IKVGINGFGRIGRLVLRALLER--PDIEVVAINDLTDPETLAH 41 (149)
T ss_pred CEEEEECcCHHHHHHHHHHHhC--CCCEEEEeecCCCHHHHHH
Confidence 5899999999999888887754 4577777763 6665544
No 488
>PRK14095 pgi glucose-6-phosphate isomerase; Provisional
Probab=33.00 E-value=1.2e+02 Score=32.94 Aligned_cols=40 Identities=23% Similarity=0.390 Sum_probs=24.8
Q ss_pred CeEEEEeeCc--chHHHHHHHHHc---CCCceEEEEEECCHHHHhc
Q 014946 59 AKIKVVGVGG--GGNNAVNRMIGS---GLQGVDFYAINTDSQALLQ 99 (415)
Q Consensus 59 ~~i~vIGvGg--aG~niv~~l~~~---~~~~v~~iainTD~~~L~~ 99 (415)
..|.+||||| -|-.++-..++. .-..+.|+. |.|...+..
T Consensus 152 ~~VV~IGIGGS~LGp~av~~AL~~~~~~~~~l~fvs-NvDp~~~~e 196 (533)
T PRK14095 152 TTVVQIGIGGSDLGPKALYLALKNYAKKDKRVHFIS-NVDPDDAAE 196 (533)
T ss_pred ceEEEEecCcchHhHHHHHHHHHhhccCCceEEEEC-CCCHHHHHH
Confidence 4699999999 667776554332 111244444 888887654
No 489
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=32.85 E-value=2.7e+02 Score=26.14 Aligned_cols=80 Identities=14% Similarity=0.171 Sum_probs=46.6
Q ss_pred CCCCeEEEEee-CcchHHHHHHHHHcCCCceEEEEEECCHHHHhcCCCCCCe-eccccccccCCCCCCchhhHHHHHHHH
Q 014946 56 METAKIKVVGV-GGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSAAENPL-QIGDLLTRGLGTGGNPLLGEQAAEESK 133 (415)
Q Consensus 56 ~~~~~i~vIGv-GgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~~~~~ki-~ig~~~t~G~GaG~n~~~G~~~aee~~ 133 (415)
+....+.|.|. |+-|..++.+|.+.|. +.+.++.+...+.. .++ .+.-.+ .+ .+..++..
T Consensus 7 l~~k~vlItG~s~gIG~~la~~l~~~G~---~v~~~~~~~~~~~~----~~~~~~~~D~-------~~----~~~~~~~~ 68 (266)
T PRK06171 7 LQGKIIIVTGGSSGIGLAIVKELLANGA---NVVNADIHGGDGQH----ENYQFVPTDV-------SS----AEEVNHTV 68 (266)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCC---EEEEEeCCcccccc----CceEEEEccC-------CC----HHHHHHHH
Confidence 44567888885 6788999999998874 45555544433321 111 111011 11 22344455
Q ss_pred HHHHHHhcCCCEEEEeccCC
Q 014946 134 EVIANALKGSDLVFITAGMG 153 (415)
Q Consensus 134 e~I~~~le~~D~~~I~agLG 153 (415)
+++.+.....|.++-++|..
T Consensus 69 ~~~~~~~g~id~li~~Ag~~ 88 (266)
T PRK06171 69 AEIIEKFGRIDGLVNNAGIN 88 (266)
T ss_pred HHHHHHcCCCCEEEECCccc
Confidence 55666667789988888764
No 490
>PRK09533 bifunctional transaldolase/phosoglucose isomerase; Validated
Probab=32.75 E-value=1.4e+02 Score=34.77 Aligned_cols=41 Identities=20% Similarity=0.225 Sum_probs=25.2
Q ss_pred CeEEEEeeCc--chHHHHHHHHHcCCCceEE-EEEECCHHHHhc
Q 014946 59 AKIKVVGVGG--GGNNAVNRMIGSGLQGVDF-YAINTDSQALLQ 99 (415)
Q Consensus 59 ~~i~vIGvGg--aG~niv~~l~~~~~~~v~~-iainTD~~~L~~ 99 (415)
-.|.+||+|| .|..++..++........+ +.-|+|+..+..
T Consensus 456 d~VVviGIGGS~LG~~~l~~~l~~~~~~p~l~~ldn~DP~~v~~ 499 (948)
T PRK09533 456 TDAVVLGMGGSSLGPEVLAETFGQRDGFPKLHVLDSTDPAQVRA 499 (948)
T ss_pred CEEEEEccChhHHHHHHHHHHHHhcCCCceEEEEeCCChHHHHH
Confidence 5699999998 4556666655432111223 345679888763
No 491
>PLN02358 glyceraldehyde-3-phosphate dehydrogenase
Probab=32.72 E-value=71 Score=32.62 Aligned_cols=40 Identities=18% Similarity=0.312 Sum_probs=31.5
Q ss_pred CCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEEC---CHHHHhc
Q 014946 58 TAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINT---DSQALLQ 99 (415)
Q Consensus 58 ~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainT---D~~~L~~ 99 (415)
++||.|+|+|..|-..+..+.+. ++++.++||. |.+.+.+
T Consensus 5 ~lrVaI~G~GrIGr~~~r~~~~~--~~velvaI~D~~~~~~~~a~ 47 (338)
T PLN02358 5 KIRIGINGFGRIGRLVARVVLQR--DDVELVAVNDPFITTEYMTY 47 (338)
T ss_pred ceEEEEEeecHHHHHHHHHHhhC--CCcEEEEEeCCCCCHHHHHH
Confidence 58999999999999988887764 5688999875 5555544
No 492
>PRK14096 pgi glucose-6-phosphate isomerase; Provisional
Probab=32.69 E-value=1.5e+02 Score=32.14 Aligned_cols=41 Identities=22% Similarity=0.413 Sum_probs=24.3
Q ss_pred CeEEEEeeCcc--hHHHHHHHHHcCCCceEEEE-EECCHHHHhc
Q 014946 59 AKIKVVGVGGG--GNNAVNRMIGSGLQGVDFYA-INTDSQALLQ 99 (415)
Q Consensus 59 ~~i~vIGvGga--G~niv~~l~~~~~~~v~~ia-inTD~~~L~~ 99 (415)
..|.+|||||. |-.++-..+...-....+.+ =|+|+..+..
T Consensus 115 ~~vV~IGIGGS~LGp~~v~~AL~~~~~~~~~~f~dN~Dp~~~~~ 158 (528)
T PRK14096 115 TDVLWIGIGGSALGPQFVAEALQPNSDGLNIHFIDNTDPDGIDR 158 (528)
T ss_pred CeEEEECCCcchHHHHHHHHHHhhcCCCCcEEEEcCCCHHHHHH
Confidence 56999999984 55555554432111233434 4779887654
No 493
>PRK10264 hydrogenase 1 maturation protease; Provisional
Probab=32.37 E-value=86 Score=29.38 Aligned_cols=40 Identities=23% Similarity=0.331 Sum_probs=30.2
Q ss_pred CCeEEEEeeC-------cchHHHHHHHHHc-C-CCceEEEEEECCHHHH
Q 014946 58 TAKIKVVGVG-------GGGNNAVNRMIGS-G-LQGVDFYAINTDSQAL 97 (415)
Q Consensus 58 ~~~i~vIGvG-------gaG~niv~~l~~~-~-~~~v~~iainTD~~~L 97 (415)
.+||+|+|+| |.|..++++|.+. . ..+++++-..|....|
T Consensus 3 ~~rilVlGiGN~L~gDDGvG~~va~~L~~~~~~~~~V~vid~Gt~g~~l 51 (195)
T PRK10264 3 EQRVVVMGLGNLLWADEGFGVRVAERLYAHYHWPEYVEIVDGGTQGLNL 51 (195)
T ss_pred CCCEEEEEeCccccccCcHHHHHHHHHHhhcCCCCCeEEEECCCCHHHH
Confidence 4689999999 7999999999765 2 2357776666766554
No 494
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=32.32 E-value=63 Score=34.70 Aligned_cols=39 Identities=15% Similarity=0.263 Sum_probs=30.9
Q ss_pred CCCCeEEEEeeCcchHHHHHHHHHcCCCceEEEEEECCHHHH
Q 014946 56 METAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQAL 97 (415)
Q Consensus 56 ~~~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iainTD~~~L 97 (415)
.+..+|.+||+|--|.+++.+|.++|.+ ..+.|-+....
T Consensus 4 ~~~~~IG~IGLG~MG~~mA~nL~~~G~~---V~V~NRt~~k~ 42 (493)
T PLN02350 4 AALSRIGLAGLAVMGQNLALNIAEKGFP---ISVYNRTTSKV 42 (493)
T ss_pred CCCCCEEEEeeHHHHHHHHHHHHhCCCe---EEEECCCHHHH
Confidence 3456899999999999999999999853 55667765543
No 495
>TIGR01231 lacC tagatose-6-phosphate kinase. This enzyme is part of the tagatose-6-phosphate pathway of lactose degradation.
Probab=32.32 E-value=2.9e+02 Score=26.84 Aligned_cols=45 Identities=13% Similarity=0.144 Sum_probs=26.5
Q ss_pred HHHHHHHHhcCCCEEEEeccCCCCccCChHHHHHHHHHHhCCceE
Q 014946 132 SKEVIANALKGSDLVFITAGMGGGTGSGAAPVVAQIAKEAGYLTV 176 (415)
Q Consensus 132 ~~e~I~~~le~~D~~~I~agLGGGTGSG~apvia~~ake~g~~tv 176 (415)
..+...+.++++|+|++...+..+........+.+.+++.+..++
T Consensus 116 ~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~ 160 (309)
T TIGR01231 116 FLKHFEQLLEKVEVVAISGSLPKGLPQDYYAQIIERCQNKGVPVV 160 (309)
T ss_pred HHHHHHHHhccCCEEEEECCCCCCcCHHHHHHHHHHHHhCCCeEE
Confidence 344556678899988886665443322233345566676666543
No 496
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=32.06 E-value=52 Score=28.40 Aligned_cols=27 Identities=26% Similarity=0.448 Sum_probs=22.0
Q ss_pred EEEEeeCcchHHHHHHHHHcCCCceEEE
Q 014946 61 IKVVGVGGGGNNAVNRMIGSGLQGVDFY 88 (415)
Q Consensus 61 i~vIGvGgaG~niv~~l~~~~~~~v~~i 88 (415)
|.|+|.|..|+-++-+|.+.+.+ |.++
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~-V~l~ 27 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHD-VTLV 27 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCE-EEEE
T ss_pred CEEECcCHHHHHHHHHHHHCCCc-eEEE
Confidence 78999999999999999887643 4433
No 497
>TIGR03603 cyclo_dehy_ocin bacteriocin biosynthesis cyclodehydratase, SagC family. Members of this protein family include enzymes related to SagC, a cyclodehydratase involved in the biosynthesis of streptolysin S in Streptococcus pyogenes from the protoxin polypeptide (product of the sagA gene). This protein family serves as a marker for widely distributed prokaryotic systems for making a general class of heterocycle-containing bacteriocins. Note that this model does not find all possible examples of bacteriocin biosynthesis cyclodehydratases, an in particular misses the E. coli plasmid protein McbB of microcin B17 biosynthesis.
Probab=31.92 E-value=76 Score=32.00 Aligned_cols=85 Identities=9% Similarity=0.128 Sum_probs=50.6
Q ss_pred eCcchHHHHHHHHHcCCCceEEEEEECCHHHHhcCCCCCCeeccccccccCCCCCCchhhH---HHHHHHHH--------
Q 014946 66 VGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSAAENPLQIGDLLTRGLGTGGNPLLGE---QAAEESKE-------- 134 (415)
Q Consensus 66 vGgaG~niv~~l~~~~~~~v~~iainTD~~~L~~~~~~~ki~ig~~~t~G~GaG~n~~~G~---~~aee~~e-------- 134 (415)
+||-|+.++.+|.+ |+. ....+|-|.-.+.++. ++..+. .+|+ ++|.+..+
T Consensus 81 ~GGLGs~va~~La~-GVg--~L~ivD~D~Ve~SNL~----~L~~~~-----------diG~~K~~~a~~~L~~lnp~v~i 142 (318)
T TIGR03603 81 LGKFGANIAYNLCN-NVG--ALFISDKTYFQETAEI----DLYSKE-----------FILKKDIRDLTSNLDALELTKNV 142 (318)
T ss_pred cccchHHHHHHHhC-CCC--EEEEEcCCEechhhHH----HHhChh-----------hcCcHHHHHHHHHHHHhCCCCEE
Confidence 99999999999999 975 5667888766555443 333321 1121 11222222
Q ss_pred -HHHHHhcCCCEEEEeccCCCCccCChHHH---HHHHHHHhCCc
Q 014946 135 -VIANALKGSDLVFITAGMGGGTGSGAAPV---VAQIAKEAGYL 174 (415)
Q Consensus 135 -~I~~~le~~D~~~I~agLGGGTGSG~apv---ia~~ake~g~~ 174 (415)
.+.+.++++|+|+.+.. .=.... +-+.+.+.+++
T Consensus 143 ~~~~~li~~~DlVid~tD------n~~~r~L~~iN~ac~~~~~P 180 (318)
T TIGR03603 143 DELKDLLKDYNYIIICTE------HSNISLLRGLNKLSKETKKP 180 (318)
T ss_pred eeHHHHhCCCCEEEECCC------CccHhHHHHHHHHHHHHCCC
Confidence 24556778998888652 222333 45677777764
No 498
>PLN02306 hydroxypyruvate reductase
Probab=31.78 E-value=54 Score=34.01 Aligned_cols=37 Identities=16% Similarity=0.277 Sum_probs=28.8
Q ss_pred CCCCCCeEEEEeeCcchHHHHHHHH-HcCCCceEEEEEECC
Q 014946 54 APMETAKIKVVGVGGGGNNAVNRMI-GSGLQGVDFYAINTD 93 (415)
Q Consensus 54 ~~~~~~~i~vIGvGgaG~niv~~l~-~~~~~~v~~iainTD 93 (415)
....+.++.|||.|..|..++.++. ..| ++.++.|..
T Consensus 161 ~~L~gktvGIiG~G~IG~~vA~~l~~~fG---m~V~~~d~~ 198 (386)
T PLN02306 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFK---MNLIYYDLY 198 (386)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHhcCC---CEEEEECCC
Confidence 3467889999999999999998874 444 567777753
No 499
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=31.78 E-value=2.2e+02 Score=29.78 Aligned_cols=32 Identities=19% Similarity=0.295 Sum_probs=25.2
Q ss_pred CCeEEEEeeCcchHHHHHHHHHcCCCceEEEEE
Q 014946 58 TAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAI 90 (415)
Q Consensus 58 ~~~i~vIGvGgaG~niv~~l~~~~~~~v~~iai 90 (415)
.|||+|||-|+.=-.++.+|.+++.. ...++.
T Consensus 4 ~~kvLviG~g~rehal~~~~~~~~~~-~~~~~~ 35 (426)
T PRK13789 4 KLKVLLIGSGGRESAIAFALRKSNLL-SELKVF 35 (426)
T ss_pred CcEEEEECCCHHHHHHHHHHHhCCCC-CEEEEE
Confidence 48999999999999999999888632 344443
No 500
>PF05057 DUF676: Putative serine esterase (DUF676); InterPro: IPR007751 This domain, whose function is unknown, is found within a group of putative lipases.
Probab=31.71 E-value=35 Score=32.05 Aligned_cols=31 Identities=35% Similarity=0.440 Sum_probs=18.4
Q ss_pred hHHHHHHHHHHHHHHhcC-CCEEEEeccCCCC
Q 014946 125 GEQAAEESKEVIANALKG-SDLVFITAGMGGG 155 (415)
Q Consensus 125 G~~~aee~~e~I~~~le~-~D~~~I~agLGGG 155 (415)
|++.++|..+.+.+.-.. ..+.||.|||||=
T Consensus 59 g~rL~~eI~~~~~~~~~~~~~IsfIgHSLGGl 90 (217)
T PF05057_consen 59 GERLAEEILEHIKDYESKIRKISFIGHSLGGL 90 (217)
T ss_pred HHHHHHHHHHhccccccccccceEEEecccHH
Confidence 445555544444333223 3589999999964
Done!