RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 014946
(415 letters)
>4dxd_A Cell division protein FTSZ; rossmann fold, GTPase, GTP binding,
cell cycle-inhibitor COM; HET: GDP 9PC; 2.01A
{Staphylococcus aureus}
Length = 396
Score = 548 bits (1413), Expect = 0.0
Identities = 186/356 (52%), Positives = 245/356 (68%)
Query: 57 ETAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSAAENPLQIGDLLTRGL 116
A +KV+GVGGGGNNAVNRMI G+ V+F AINTD QAL S AE+ +QIG+ LTRGL
Sbjct: 16 HLATLKVIGVGGGGNNAVNRMIDHGMNNVEFIAINTDGQALNLSKAESKIQIGEKLTRGL 75
Query: 117 GTGGNPLLGEQAAEESKEVIANALKGSDLVFITAGMGGGTGSGAAPVVAQIAKEAGYLTV 176
G G NP +G++AAEES+E I +A++G+D+VF+T+GMGGGTG+GAAPVVA+IAKE G LTV
Sbjct: 76 GAGANPEIGKKAAEESREQIEDAIQGADMVFVTSGMGGGTGTGAAPVVAKIAKEMGALTV 135
Query: 177 GVVTYPFSFEGRKRSSQALEAIERLQKNVDTLIVIPNDRLLDITDEQTALQDAFLLADDV 236
GVVT PFSFEGRKR +QA +E ++ VDTLIVIPNDRLLDI D+ T + +AF AD+V
Sbjct: 136 GVVTRPFSFEGRKRQTQAAAGVEAMKAAVDTLIVIPNDRLLDIVDKSTPMMEAFKEADNV 195
Query: 237 LRQGVQGISDIITIPGLVNVDFADVKAVMKDSGTAMLGVGVSSSKNRAEEAAEQATLAPL 296
LRQGVQGISD+I + G VN+DFADVK +M + G+A++G+GVSS +NRA EAA++A +PL
Sbjct: 196 LRQGVQGISDLIAVSGEVNLDFADVKTIMSNQGSALMGIGVSSGENRAVEAAKKAISSPL 255
Query: 297 IGSSIQSATGVVYNITGGKDITLQEVNRVSQVVTSLADPSANIIFGAVVDDRYNGEIHVT 356
+ +SI A GV+ NITGG+ ++L E + +V AD N+IFG V++ EI VT
Sbjct: 256 LETSIVGAQGVLMNITGGESLSLFEAQEAADIVQDAADEDVNMIFGTVINPELQDEIVVT 315
Query: 357 IIATGFSQSFQKTLLTNPKAAKVLDKAAGSQESRGVPLPLNTPTSPSTVNSRPPRK 412
+IATGF + S + + ++ +S R
Sbjct: 316 VIATGFDDKPTSHGRKSGSTGFGTSVNTSSNATSKDESFTSNSSNAQATDSVSERT 371
>2vxy_A FTSZ, cell division protein FTSZ; GTP-binding, nucleotide-binding,
septation, cytoplasm, B.subtilis, cell cycle; HET: CIT;
1.7A {Bacillus subtilis} PDB: 2vam_A* 2rhj_A* 2rhh_A*
2rhl_A* 2rho_A*
Length = 382
Score = 544 bits (1405), Expect = 0.0
Identities = 186/355 (52%), Positives = 252/355 (70%), Gaps = 4/355 (1%)
Query: 57 ETAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSAAENPLQIGDLLTRGL 116
A IKV+GVGGGGNNAVNRMI + +QGV++ A+NTD+QAL S AE +QIG LTRGL
Sbjct: 10 GLASIKVIGVGGGGNNAVNRMIENEVQGVEYIAVNTDAQALNLSKAEVKMQIGAKLTRGL 69
Query: 117 GTGGNPLLGEQAAEESKEVIANALKGSDLVFITAGMGGGTGSGAAPVVAQIAKEAGYLTV 176
G G NP +G++AAEESKE I ALKG+D+VF+TAGMGGGTG+GAAPV+AQIAK+ G LTV
Sbjct: 70 GAGANPEVGKKAAEESKEQIEEALKGADMVFVTAGMGGGTGTGAAPVIAQIAKDLGALTV 129
Query: 177 GVVTYPFSFEGRKRSSQALEAIERLQKNVDTLIVIPNDRLLDITDEQTALQDAFLLADDV 236
GVVT PF+FEGRKR QA I +++ VDTLIVIPNDR+L+I D+ T + +AF AD+V
Sbjct: 130 GVVTRPFTFEGRKRQLQAAGGISAMKEAVDTLIVIPNDRILEIVDKNTPMLEAFREADNV 189
Query: 237 LRQGVQGISDIITIPGLVNVDFADVKAVMKDSGTAMLGVGVSSSKNRAEEAAEQATLAPL 296
LRQGVQGISD+I PGL+N+DFADVK +M + G+A++G+G+++ +NRA EAA++A +PL
Sbjct: 190 LRQGVQGISDLIATPGLINLDFADVKTIMSNKGSALMGIGIATGENRAAEAAKKAISSPL 249
Query: 297 IGSSIQSATGVVYNITGGKDITLQEVNRVSQVVTSLADPSANIIFGAVVDDRYNGEIHVT 356
+ ++I A GV+ NITGG +++L EV + +V S +D N+IFG+V+++ EI VT
Sbjct: 250 LEAAIDGAQGVLMNITGGTNLSLYEVQEAADIVASASDQDVNMIFGSVINENLKDEIVVT 309
Query: 357 IIATGFSQSFQKTLLTNPKAAKVLDKAAGSQESRGVPLPLNTPTSPSTVNSRPPR 411
+IATGF + + K + + ++ VP P N+
Sbjct: 310 VIATGFIEQEKDV----TKPQRPSLNQSIKTHNQSVPKRDAKREEPQQQNTVSRH 360
>1rq2_A Cell division protein FTSZ; cell cycle, tubulin, GTPase, signaling
protein; HET: CIT; 1.86A {Mycobacterium tuberculosis}
SCOP: c.32.1.1 d.79.2.1 PDB: 1rlu_A* 1rq7_A* 2q1y_A*
2q1x_A*
Length = 382
Score = 544 bits (1403), Expect = 0.0
Identities = 179/356 (50%), Positives = 244/356 (68%), Gaps = 2/356 (0%)
Query: 59 AKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSAAENPLQIGDLLTRGLGT 118
A IKVVG+GGGG NAVNRMI GL+GV+F AINTD+QALL S A+ L +G TRGLG
Sbjct: 12 AVIKVVGIGGGGVNAVNRMIEQGLKGVEFIAINTDAQALLMSDADVKLDVGRDSTRGLGA 71
Query: 119 GGNPLLGEQAAEESKEVIANALKGSDLVFITAGMGGGTGSGAAPVVAQIAKEAGYLTVGV 178
G +P +G +AAE++K+ I L+G+D+VF+TAG GGGTG+G APVVA IA++ G LTVGV
Sbjct: 72 GADPEVGRKAAEDAKDEIEELLRGADMVFVTAGEGGGTGTGGAPVVASIARKLGALTVGV 131
Query: 179 VTYPFSFEGRKRSSQALEAIERLQKNVDTLIVIPNDRLLDITDEQTALQDAFLLADDVLR 238
VT PFSFEG++RS+QA I L+++ DTLIVIPNDRLL + D +L DAF AD+VL
Sbjct: 132 VTRPFSFEGKRRSNQAENGIAALRESCDTLIVIPNDRLLQMGDAAVSLMDAFRSADEVLL 191
Query: 239 QGVQGISDIITIPGLVNVDFADVKAVMKDSGTAMLGVGVSSSKNRAEEAAEQATLAPLIG 298
GVQGI+D+IT PGL+NVDFADVK +M +GTA++G+G + + R+ +AAE A +PL+
Sbjct: 192 NGVQGITDLITTPGLINVDFADVKGIMSGAGTALMGIGSARGEGRSLKAAEIAINSPLLE 251
Query: 299 SSIQSATGVVYNITGGKDITLQEVNRVSQVVTSLADPSANIIFGAVVDDRYNGEIHVTII 358
+S++ A GV+ +I GG D+ L E+N + +V A P ANIIFG V+DD E+ VT+I
Sbjct: 252 ASMEGAQGVLMSIAGGSDLGLFEINEAASLVQDAAHPDANIIFGTVIDDSLGDEVRVTVI 311
Query: 359 ATGF--SQSFQKTLLTNPKAAKVLDKAAGSQESRGVPLPLNTPTSPSTVNSRPPRK 412
A GF S +K ++ A ++ A + + + P++ + P N
Sbjct: 312 AAGFDVSGPGRKPVMGETGGAHRIESAKAGKLTSTLFEPVDAVSVPLHTNGATLSI 367
>2r75_1 Cell division protein FTSZ; GTPase, tubulin-like, inhibitor, cell
cycle; HET: 01G; 1.40A {Aquifex aeolicus} PDB: 2r6r_1*
Length = 338
Score = 527 bits (1361), Expect = 0.0
Identities = 137/322 (42%), Positives = 208/322 (64%), Gaps = 1/322 (0%)
Query: 59 AKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSAAENPLQIGDLLTRGLGT 118
KIKV+GVGGGG+NAVNRM G++GV+ YAINTD Q L N +QIG+ +TRGLG
Sbjct: 8 CKIKVIGVGGGGSNAVNRMYEDGIEGVELYAINTDVQHLSTLKVPNKIQIGEKVTRGLGA 67
Query: 119 GGNPLLGEQAAEESKEVIANALKGSDLVFITAGMGGGTGSGAAPVVAQIAKEAGYLTVGV 178
G P +GE+AA E + I L+ +D+VFI+AG+GGGTG+GAAPV+A+ AKE G LTV V
Sbjct: 68 GAKPEVGEEAALEDIDKIKEILRDTDMVFISAGLGGGTGTGAAPVIAKTAKEMGILTVAV 127
Query: 179 VTYPFSFEGRKRSSQALEAIERLQKNVDTLIVIPNDRLLDITDEQTALQDAFLLADDVLR 238
T PF FEG ++ +AL+ +E+L+++ D IVI ND++ ++++ ++DAF D VL
Sbjct: 128 ATLPFRFEGPRKMEKALKGLEKLKESSDAYIVIHNDKIKELSNRTLTIKDAFKEVDSVLS 187
Query: 239 QGVQGISDIITIPGLVNVDFADVKAVMKDSGTAMLGVGVSSSKNRAEEAAEQATLAPLI- 297
+ V+GI+ I+ P ++NVDFADV+ +++ G +++G+G +A+ A E+A +PL+
Sbjct: 188 KAVRGITSIVVTPAVINVDFADVRTTLEEGGLSIIGMGEGRGDEKADIAVEKAVTSPLLE 247
Query: 298 GSSIQSATGVVYNITGGKDITLQEVNRVSQVVTSLADPSANIIFGAVVDDRYNGEIHVTI 357
G++I+ A ++ I +DI V+ V + + S P A IIFGAV++ + I V I
Sbjct: 248 GNTIEGARRLLVTIWTSEDIPYDIVDEVMERIHSKVHPEAEIIFGAVLEPQEQDFIRVAI 307
Query: 358 IATGFSQSFQKTLLTNPKAAKV 379
+AT F + + K +
Sbjct: 308 VATDFPEEKFQVGEKEVKFKVI 329
>2vap_A FTSZ, cell division protein FTSZ homolog 1; polymerization, tubulin
homolog, GTPase, septation, cell cycle, GTP-binding;
HET: GDP; 1.70A {Methanocaldococcus jannaschii} SCOP:
c.32.1.1 d.79.2.1 PDB: 1w59_A 1w58_1* 1w5a_A* 1w5b_A*
1fsz_A* 1w5e_A*
Length = 364
Score = 528 bits (1362), Expect = 0.0
Identities = 151/319 (47%), Positives = 214/319 (67%), Gaps = 1/319 (0%)
Query: 59 AKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSAAENPLQIGDLLTRGLGT 118
AKI VVG GG GNN + R+ G++G AINTD+Q L+++ A+ + IG LTRGLG
Sbjct: 38 AKITVVGCGGAGNNTITRLKMEGIEGAKTVAINTDAQQLIRTKADKKILIGKKLTRGLGA 97
Query: 119 GGNPLLGEQAAEESKEVIANALKGSDLVFITAGMGGGTGSGAAPVVAQIAKEAGYLTVGV 178
GGNP +GE+AA+ES E I A++ SD+VFIT G+GGGTG+G+APVVA+I+K+ G LTV V
Sbjct: 98 GGNPKIGEEAAKESAEEIKAAIQDSDMVFITCGLGGGTGTGSAPVVAEISKKIGALTVAV 157
Query: 179 VTYPFSFEGRKRSSQALEAIERLQKNVDTLIVIPNDRLLDITDEQTALQDAFLLADDVLR 238
VT PF EG+ R A+E +ERL+++ DTL+VIPN++L +I L+ AF +AD+VL
Sbjct: 158 VTLPFVMEGKVRMKNAMEGLERLKQHTDTLVVIPNEKLFEIVP-NMPLKLAFKVADEVLI 216
Query: 239 QGVQGISDIITIPGLVNVDFADVKAVMKDSGTAMLGVGVSSSKNRAEEAAEQATLAPLIG 298
V+G+ ++IT GL+NVDFADVKAVM + G AM+G+G S S+ RA+EA A +PL+
Sbjct: 217 NAVKGLVELITKDGLINVDFADVKAVMNNGGLAMIGIGESDSEKRAKEAVSMALNSPLLD 276
Query: 299 SSIQSATGVVYNITGGKDITLQEVNRVSQVVTSLADPSANIIFGAVVDDRYNGEIHVTII 358
I ATG + ++ G +D+TL+E V V+S DP+A II+GA +D+ + V ++
Sbjct: 277 VDIDGATGALIHVMGPEDLTLEEAREVVATVSSRLDPNATIIWGATIDENLENTVRVLLV 336
Query: 359 ATGFSQSFQKTLLTNPKAA 377
TG + T +
Sbjct: 337 ITGVQSRIEFTDTGLKRKK 355
>1w5f_A Cell division protein FTSZ; complete proteome, GTP-binding,
multigene family, septation, tubulin, filament, Z-ring,
GTPase, domain swapped; HET: G2P; 2.0A {Thermotoga
maritima} SCOP: c.32.1.1 d.79.2.1
Length = 353
Score = 524 bits (1352), Expect = 0.0
Identities = 149/316 (47%), Positives = 218/316 (68%), Gaps = 3/316 (0%)
Query: 55 PMETAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSAAENPLQIGDLLTR 114
KIKV+GVGG GNNA+NRMI G+ GV+F A+NTD Q L S A+ +QIG+ +TR
Sbjct: 18 QANNLKIKVIGVGGAGNNAINRMIEIGIHGVEFVAVNTDLQVLEASNADVKIQIGENITR 77
Query: 115 GLGTGGNPLLGEQAAEESKEVIANALKGSDLVFITAGMGGGTGSGAAPVVAQIAKEAGYL 174
GLG GG P +GEQAA ES+E I L+ + +VFITAG GGGTG+GA+PV+A+IAKE G L
Sbjct: 78 GLGAGGRPEIGEQAALESEEKIREVLQDTHMVFITAGFGGGTGTGASPVIAKIAKEMGIL 137
Query: 175 TVGVVTYPFSFEGRKRSSQALEAIERLQKNVDTLIVIPNDRLLDITDEQTALQDAFLLAD 234
TV +VT PF FEG +R +A+E +++L+K+VDTLI I N++L++ ++DAFL AD
Sbjct: 138 TVAIVTTPFYFEGPERLKKAIEGLKKLRKHVDTLIKISNNKLMEELPRDVKIKDAFLKAD 197
Query: 235 DVLRQGVQGISDIITIPGLVNVD--FADVKAVMKDSGTAMLGVGVSSSKNRAEEAAEQAT 292
+ L QGV+GIS++IT G + + FA +++VMKD+G A+LG+GV ++RA EAA++A
Sbjct: 198 ETLHQGVKGISELITKRGYIRLTSRFARIESVMKDAGAAILGIGVGKGEHRAREAAKKAM 257
Query: 293 LAPLIGSSIQSATGVVYNITGGKDITLQEVNRVSQVVTSLADPSANIIFGAVVDDRY-NG 351
+ LI +++A+ +V+NIT +I ++EV+ + ++ + A++ FG + DD +
Sbjct: 258 ESKLIEHPVENASSIVFNITAPSNIRMEEVHEAAMIIRQNSSEDADVKFGLIFDDEVPDD 317
Query: 352 EIHVTIIATGFSQSFQ 367
EI V IAT F +
Sbjct: 318 EIRVIFIATRFPDEDK 333
>1ofu_A FTSZ, cell division protein FTSZ; bacterial cell division
inhibitor, SULA protein; HET: GDP; 2.1A {Pseudomonas
aeruginosa} SCOP: c.32.1.1 d.79.2.1
Length = 320
Score = 522 bits (1347), Expect = 0.0
Identities = 160/311 (51%), Positives = 209/311 (67%), Gaps = 1/311 (0%)
Query: 57 ETAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSAAENPLQIGDLLTRGL 116
+TA IKV+GVGGGG NAVN M + ++GV+F NTD+QAL AA LQ+G +T+GL
Sbjct: 10 QTAVIKVIGVGGGGGNAVNHMAKNNVEGVEFICANTDAQALKNIAARTVLQLGPGVTKGL 69
Query: 117 GTGGNPLLGEQAAEESKEVIANALKGSDLVFITAGMGGGTGSGAAPVVAQIAKEAGYLTV 176
G G NP +G QAA E +E I+ L+G+D+VFIT GMGGGTG+GAAP++A++AKE G LTV
Sbjct: 70 GAGANPEVGRQAALEDRERISEVLEGADMVFITTGMGGGTGTGAAPIIAEVAKEMGILTV 129
Query: 177 GVVTYPFSFEGRKRSSQALEAIERLQKNVDTLIVIPNDRLLDITDEQTALQDAFLLADDV 236
VVT PF FEGRKR A E I L ++VD+LI IPN++LL I + +L AF ADDV
Sbjct: 130 AVVTRPFPFEGRKRMQIADEGIRALAESVDSLITIPNEKLLTILGKDASLLAAFAKADDV 189
Query: 237 LRQGVQGISDIITIPGLVNVDFADVKAVMKDSGTAMLGVGVSSSKNRAEEAAEQATLAPL 296
L V+GISDII PG++NVDFADVK VM + G AM+G G +S NRA EA E A PL
Sbjct: 190 LAGAVRGISDIIKRPGMINVDFADVKTVMSEMGMAMMGTGCASGPNRAREATEAAIRNPL 249
Query: 297 I-GSSIQSATGVVYNITGGKDITLQEVNRVSQVVTSLADPSANIIFGAVVDDRYNGEIHV 355
+ ++Q A G++ NIT G D++L E + V ++ A A + G V+D E+HV
Sbjct: 250 LEDVNLQGARGILVNITAGPDLSLGEYSDVGNIIEQFASEHATVKVGTVIDADMRDELHV 309
Query: 356 TIIATGFSQSF 366
T++ATG
Sbjct: 310 TVVATGLGARL 320
>2vaw_A FTSZ, cell division protein FTSZ; bacterial cell division protein,
tubulin homolog, nucleotide-binding, GTPase, septation,
cytoplasm; HET: GDP; 2.90A {Pseudomonas aeruginosa}
SCOP: c.32.1.1 d.79.2.1
Length = 394
Score = 514 bits (1325), Expect = 0.0
Identities = 165/357 (46%), Positives = 218/357 (61%), Gaps = 1/357 (0%)
Query: 57 ETAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSAAENPLQIGDLLTRGL 116
+TA IKV+GVGGGG NAVN M + ++GV+F NTD+QAL AA LQ+G +T+GL
Sbjct: 10 QTAVIKVIGVGGGGGNAVNHMAKNNVEGVEFICANTDAQALKNIAARTVLQLGPGVTKGL 69
Query: 117 GTGGNPLLGEQAAEESKEVIANALKGSDLVFITAGMGGGTGSGAAPVVAQIAKEAGYLTV 176
G G NP +G QAA E +E I+ L+G+D+VFIT GMGGGTG+GAAP++A++AKE G LTV
Sbjct: 70 GAGANPEVGRQAALEDRERISEVLEGADMVFITTGMGGGTGTGAAPIIAEVAKEMGILTV 129
Query: 177 GVVTYPFSFEGRKRSSQALEAIERLQKNVDTLIVIPNDRLLDITDEQTALQDAFLLADDV 236
VVT PF FEGRKR A E I L ++VD+LI IPN++LL I + +L AF ADDV
Sbjct: 130 AVVTRPFPFEGRKRMQIADEGIRALAESVDSLITIPNEKLLTILGKDASLLAAFAKADDV 189
Query: 237 LRQGVQGISDIITIPGLVNVDFADVKAVMKDSGTAMLGVGVSSSKNRAEEAAEQATLAPL 296
L V+GISDII PG++NVDFADVK VM + G AM+G G +S NRA EA E A PL
Sbjct: 190 LAGAVRGISDIIKRPGMINVDFADVKTVMSEMGMAMMGTGCASGPNRAREATEAAIRNPL 249
Query: 297 I-GSSIQSATGVVYNITGGKDITLQEVNRVSQVVTSLADPSANIIFGAVVDDRYNGEIHV 355
+ ++Q A G++ NIT G D++L E + V ++ A A + G V+D E+HV
Sbjct: 250 LEDVNLQGARGILVNITAGPDLSLGEYSDVGNIIEQFASEHATVKVGTVIDADMRDELHV 309
Query: 356 TIIATGFSQSFQKTLLTNPKAAKVLDKAAGSQESRGVPLPLNTPTSPSTVNSRPPRK 412
T++ATG +K + + A + R TV
Sbjct: 310 TVVATGLGARLEKPVKVVDNTVQGSAAQAAAPAQREQQSVNYRDLDRPTVMRNQSHG 366
>4ei7_A Plasmid replication protein REPX; GTP hydrolase, plasmid
segregation; HET: GDP; 1.90A {Bacillus cereus} PDB:
4ei8_A 4ei9_A*
Length = 389
Score = 303 bits (777), Expect = e-100
Identities = 55/348 (15%), Positives = 113/348 (32%), Gaps = 41/348 (11%)
Query: 59 AKIKVVGVGGGGNN------AVNRMIGSGLQGVDFYAINTDSQALLQSAAENPLQIGDLL 112
K +G+G GG I + +NT+SQ + +N + +
Sbjct: 16 LKFGFLGLGMGGCAIAAECANKETQIKNNKYPYRAILVNTNSQDFNKIEIKNTGNVRKIQ 75
Query: 113 TRGL--GTGGNPLLGEQAAEESKEVIANAL----KGSDLVFITAGMGGGTGSGAAPVVAQ 166
G G NP +GE+A + + I A+ + D ++IT G+GGGTG+GA +
Sbjct: 76 LEGYEQGAARNPQVGEEAFVKHETKIFEAVKQEFEDRDFIWITCGLGGGTGTGALLKAIE 135
Query: 167 IAKEAGYLTVGVVTYPFSFEGRKRSSQALEAIERLQKN---VDTLIVIPNDRLLDITDEQ 223
+ E Y ++T P E K A I + N ++++I N +L +E+
Sbjct: 136 MLYEHDYNFGLLLTLPRDAEALKVLENATSRIRSIAMNQEAFGSIVLIDNAKLYRKFEEE 195
Query: 224 T---ALQDAFLLADDVLRQGVQGISDIITIP---GLVNVDFADVKAVMKDSGTAMLGVGV 277
+ ++ + + I+ + + + D ++ V+ G L
Sbjct: 196 NPSALANEYTSYSNKYIADALHEINLVTSSFTPFSDTHFDASEFAQVINTPGVLSLAKLE 255
Query: 278 -------SSSKNRAEEAAEQATLAPLI----GSSIQSATGVVYNITGGKDITLQEVNR-- 324
+ + A ++ ++SA +I + N
Sbjct: 256 LKSNQLDTENPLGYLTQLGNALEKGVLYDTEREELESAKKSALSIVTSPLRAGRLYNFSF 315
Query: 325 -------VSQVVTSLADPSANIIFGAVVDDRYNGEIHVTIIATGFSQS 365
+ + + + + + + G
Sbjct: 316 LNQMENFLKERTPYVDERPIAPYVNKHTTKKEEDIVKFYSVVAGLPLP 363
>3v3t_A Cell division GTPase FTSZ, diverged; TUBZ, tubulin/FTSZ related,
rossmann fold, GTP bindi structural protein; 2.30A
{Clostridium botulinum C}
Length = 360
Score = 214 bits (546), Expect = 2e-66
Identities = 46/346 (13%), Positives = 110/346 (31%), Gaps = 26/346 (7%)
Query: 55 PMETAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQ-SAAENPLQIGDLLT 113
P KI +G GG N V+ ++G + INT + L A++ I
Sbjct: 1 PHMKNKIVFAPIGQGGGNIVDTLLGIC-GDYNALFINTSKKDLDSLKHAKHTYHIPYAEG 59
Query: 114 RGLGTGGNPLLGEQAAEESKEVIANALKGSDLVFITAGMGGGTGSGAAPVVAQIAKEA-- 171
G + ++ I D+V A M GG GSG P + +AK+
Sbjct: 60 CGKERKKAVGYAQTYYKQIIAQIMEKFSSCDIVIFVATMAGGAGSGITPPILGLAKQMYP 119
Query: 172 GYLTVGVVTYPFSFEGRKRSSQALEAIERLQKNVD-----TLIVIPNDRLLDITDEQTAL 226
V P + E A+ + ++ + ++ ++ N++
Sbjct: 120 NKHFGFVGVLPKATEDIDEHMNAIACWNDIMRSTNEGKDISIYLLDNNK----------- 168
Query: 227 QDAFLLADDVLRQGVQGISDIITIPGLVNVDFADVKAVMKDSGTAMLGVGVSSSKNRAEE 286
++ + ++ VD ++ ++ + + + K +
Sbjct: 169 REKESDINKEFATLFNDFMNMSESHAEGVVDEDEISKLLTMKKSNV--ILEFDDKEDIQV 226
Query: 287 AAEQATL-APLIGSSIQSATGVVYNITGGKDI-TLQEVNRVSQVVTSLADPSANIIFGAV 344
A ++ + + + + + T D+ ++ + + + NI+
Sbjct: 227 ALAKSLKESIFAEYTTNTCEFMGISTTRVVDVEAIKSIVGYPRRTFKGYNSKKNIVVATG 286
Query: 345 VDDRYNGEIHVTIIATGFSQSFQKTLLTNPKAAKVLDKAAGSQESR 390
++ + + Q+ +T+ +++ A E
Sbjct: 287 IE--PQKTTVQMMNEIIEDKMKQRREVTSKSENMIIEPIALDDEDN 330
>3m89_A FTSZ/tubulin-related protein; partition, TUBZ, GTP-binding,
nucleotide-BIND structural protein; HET: GSP; 2.00A
{Bacillus thuringiensis} PDB: 3m8k_A 2xka_A* 2xkb_A*
Length = 427
Score = 91.9 bits (227), Expect = 2e-20
Identities = 50/357 (14%), Positives = 99/357 (27%), Gaps = 57/357 (15%)
Query: 60 KIKVVGVGGGGNNAVNRMI----GSGLQGVDFYAINTDSQALLQSAAENPLQIGDLLTRG 115
+ V+G G GN + +G A+N ++ + +
Sbjct: 44 RWGVIGAGQKGNKEADLFAGYKFSNGTTCYPTLAVNFA-ESDMMHLQNIIKEDRIHFDGL 102
Query: 116 LGTGGNPLLGEQAAEESKEVIANALK------------------GSDLVFITAGMGGGTG 157
G P + + AN D I G GGG G
Sbjct: 103 KGAARTPSVVTDLFDPETNPNANGYLDKLAQELGRKFTNEEGEVIVDQFLICLGAGGGVG 162
Query: 158 SGAAPVVAQIAKEAGYLT--VGVVTYPFSFEGRKRSSQA-LEAIERL------------Q 202
+G +V Q+ +E + +++ P ++ L I+
Sbjct: 163 TGWGSLVLQLIREQFFPCPVSMLISLPSGDPDEINNALVLLSEIDEFMREQDRLFGNSDI 222
Query: 203 KNVDTLIVIPNDRLLDITDEQTALQDAFLLADDVLRQGVQGISDIITI---------PGL 253
K + +IV N ++ I + Q +D + + +
Sbjct: 223 KPLANVIVNDNTQMQRIIESQKGTKDLKNRYVNWKEVANDNVVSTLHEINIIPENYGSDN 282
Query: 254 VNVDFADVKAVMKDSGTAMLGVGVSSSKNRAEEAAEQATLAPL------IGSSIQSATGV 307
V D +D+ ++ G L +G + + E + L ++AT
Sbjct: 283 VTYDPSDLIKLLSIPGR-FLTIGKARIAKFDLHSLENSIKRSLDEGFFSAEHQFETATMY 341
Query: 308 VYNITGGKDITLQE-VNRVSQVVTSLADPSANIIFGAVVDD--RYNGEIHVTIIATG 361
+ + + VN +++ +L + D N I G
Sbjct: 342 GGFVLRPSNADFFKDVNTENRIRNTLGEYKRLDEIAGKFGDPIWDNEYAVCYTIFAG 398
>3r4v_A Putative uncharacterized protein; tubulin, unknown function; HET:
GDP; 1.67A {Pseudomonas phage 201phi2-1} PDB: 3rb8_A*
Length = 315
Score = 69.1 bits (168), Expect = 3e-13
Identities = 31/207 (14%), Positives = 70/207 (33%), Gaps = 20/207 (9%)
Query: 60 KIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSAAENPLQIGDLLTRGLGTG 119
K+ ++ GG G N +++ G + +T + ++ + L G G
Sbjct: 4 KVCLIFAGGTGMNVATKLVD---LGEAVHCFDTCDKNVVDVHRSVNVT---LTKGTRGAG 57
Query: 120 GNPLLGEQAAEESKEVIANALKGSDLVFITAGMGGGTGSGAAPVVAQIAKEAGYLTVGVV 179
GN + + + + +D + +GGG+GS P++ + V V
Sbjct: 58 GNRKVILPLVRPQIPALMDTIPEADFYIVCYSLGGGSGSVLGPLITGQLADRKASFVSFV 117
Query: 180 -TYPFSFEGRKRSSQALEAIERLQKNVDTLIVIPNDRLLDITDEQTALQDAFLLADDVLR 238
S + ++ +E + N IV+ + T ++ +
Sbjct: 118 VGAMESTDNLGNDIDTMKTLEAIAVNKHLPIVV---NYVPNTQGRSYE--------SIND 166
Query: 239 QGVQGISDIITIPGL--VNVDFADVKA 263
+ + I ++ + +D DV
Sbjct: 167 EIAEKIRKVVLLVNQNHGRLDVHDVAN 193
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 55.1 bits (132), Expect = 3e-08
Identities = 80/441 (18%), Positives = 139/441 (31%), Gaps = 163/441 (36%)
Query: 2 ATLQVTNPNELISSSTSFANSLHYNNSRSLSRKTMRK---SA-WKRCRSGNISCSFAPME 57
A L N L+ + N Y +R ++++ K SA ++ GN
Sbjct: 106 AKLLQENDTTLVKTKELIKN---YITARIMAKRPFDKKSNSALFRAVGEGN--------- 153
Query: 58 TAKIKVVGVGGGGNNAVNRMIGSG----LQGVDFYA---------INTDSQALLQSAAEN 104
A++ + GG GN L+ D Y I S L
Sbjct: 154 -AQLVAI-FGGQGNT-------DDYFEELR--DLYQTYHVLVGDLIKF-SAETLSELIRT 201
Query: 105 PLQIGDLLTRGLGTGGNPLLGEQAAEESKEVIANALKGSDLVFITAGMGGGTGSGAAPVV 164
L + T+GL I L+ P
Sbjct: 202 TLDAEKVFTQGLN------------------ILEWLENPS---------------NTP-- 226
Query: 165 AQIAKEAGYLTVGVVTYPFSFEGRKRSSQALEAIERLQKNVDTL---IVIPNDRLLDITD 221
+ YL ++ P S I +Q L +V +LL T
Sbjct: 227 -----DKDYL----LSIPISCPL----------IGVIQ-----LAHYVVTA--KLLGFTP 260
Query: 222 EQTALQDAFLLADDVLRQGVQGIS----DIIT--IPGLVN--VDFAD--VKAVMKDSGTA 271
+ LR ++G + ++T + F KA+ T
Sbjct: 261 GE-------------LRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAI-----TV 302
Query: 272 MLGVGVSSSKNRAEEAAEQATLAP-LIGSSIQSATGV---VYNITGGKDITLQEVNRVSQ 327
+ +GV R EA +L P ++ S+++ GV + +I+ +Q+ V++
Sbjct: 303 LFFIGV-----RCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQD--YVNK 355
Query: 328 VVTSLADPSANIIFGAVVDDRYNGEIHVTIIATGFSQSFQ--KTLLTNPKAAKVLD--KA 383
+ L P+ + ++V NG ++ + +G QS L KA LD +
Sbjct: 356 TNSHL--PAGKQVEISLV----NGAKNLVV--SGPPQSLYGLNLTLRKAKAPSGLDQSRI 407
Query: 384 AGSQESRGVP-----LPLNTP 399
S+ R + LP+ +P
Sbjct: 408 PFSE--RKLKFSNRFLPVASP 426
Score = 43.9 bits (103), Expect = 9e-05
Identities = 46/253 (18%), Positives = 75/253 (29%), Gaps = 82/253 (32%)
Query: 8 NPNELISSSTSFANSLHYNNSRSLSRKTMRKSAWKRCRSGNISCSFAPMETAKIKVVGVG 67
NP L +H+ + KR R + F + K+K +
Sbjct: 1668 NPVNLT---------IHFGGEKG-----------KRIRENYSAMIFETIVDGKLKTEKIF 1707
Query: 68 GGGNNAVNRMIGSGLQGVDFYAINTDSQ-ALL-QSAAENPLQIGDLLTRGLGTGGNPL-- 123
N +G+ T Q AL A DL ++GL
Sbjct: 1708 KEINEHSTSYTFRSEKGLLSATQFT--QPALTLMEKA----AFEDLKSKGLIPADATFAG 1761
Query: 124 --LGEQAAEESKEVIANALKGSD---LVF---------ITAGMGGGTGSGAA---P---- 162
LGE AA S +A+ + +VF + G + G P
Sbjct: 1762 HSLGEYAALAS---LADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVA 1818
Query: 163 ----------VVAQIAKEAGYLTVGVVTY--PFSFEGRKRSSQ-----ALEAIERLQKNV 205
VV ++ K G+L V +V Y + Q L A++ + +
Sbjct: 1819 ASFSQEALQYVVERVGKRTGWL-VEIVNYNVE--------NQQYVAAGDLRALDTVTNVL 1869
Query: 206 DTLIV--IPNDRL 216
+ + + I L
Sbjct: 1870 NFIKLQKIDIIEL 1882
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 40.6 bits (94), Expect = 8e-04
Identities = 53/392 (13%), Positives = 112/392 (28%), Gaps = 91/392 (23%)
Query: 1 MATLQ----VTNPNELISSSTSFANSLHYNNSRSLSRKTMRKSAWKRC------------ 44
+ LQ +PN S S L ++ ++ R+ ++ ++ C
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA 258
Query: 45 -RSGNISCSFAPMETAKIKVVGVGGGGNNAVNRMI--GSGL---QGVDFYA--INTDSQA 96
+ N+SC + T +V + L + ++ Q
Sbjct: 259 WNAFNLSCKIL-LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD 317
Query: 97 L-LQSAAENPLQ---IGDLLTRGLGTGGN-PLLGEQAAEESKEVIANALKGSDL------ 145
L + NP + I + + GL T N + E N L+ ++
Sbjct: 318 LPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR 377
Query: 146 --VF-----ITAGM-----GGGTGSGAAPVVAQ------IAKEAGYLTVGVVTYPFSFEG 187
VF I + S VV + + K+ T+ + + +
Sbjct: 378 LSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKV 437
Query: 188 RKRSSQALEA--IER--LQKNVDTLIVIPNDRLLDITD--------------EQTALQDA 229
+ + AL ++ + K D +D + D E
Sbjct: 438 KLENEYALHRSIVDHYNIPKTFD-----SDDLIPPYLDQYFYSHIGHHLKNIEHPERMTL 492
Query: 230 F---LLADDVLRQGVQGISDIITIPGLVNVDFADVKA----VMKDSGT-AMLGVGVSSSK 281
F L L Q ++ S G + +K + + L V++
Sbjct: 493 FRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERL---VNAIL 549
Query: 282 NRAEEAAEQATLAP---LIGSSIQSATGVVYN 310
+ + E + L+ ++ + ++
Sbjct: 550 DFLPKIEENLICSKYTDLLRIALMAEDEAIFE 581
>3sbx_A Putative uncharacterized protein; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M}
Length = 189
Score = 34.5 bits (80), Expect = 0.027
Identities = 23/95 (24%), Positives = 33/95 (34%), Gaps = 21/95 (22%)
Query: 119 GGNPLLGEQAAEESKEVIANALKGSDLVFITAGMGGGTGSGAAPVVAQIAKEAGYLTVGV 178
+P L E A + A +G LV+ GG A V+ A+ G TVGV
Sbjct: 24 PTHPELLELAGAVGAAI---AARGWTLVW------GGGHVSAMGAVSSAARAHGGWTVGV 74
Query: 179 VTYPFSFEGRKRSSQALEAIERLQKNVDTLIVIPN 213
+ + L E + D L+V
Sbjct: 75 IP------------KMLVHRELADHDADELVVTET 97
>3qua_A Putative uncharacterized protein; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid; 2.10A {Mycobacterium smegmatis str}
Length = 199
Score = 34.1 bits (79), Expect = 0.040
Identities = 28/95 (29%), Positives = 35/95 (36%), Gaps = 21/95 (22%)
Query: 119 GGNPLLGEQAAEESKEVIANALKGSDLVFITAGMGGGTGSGAAPVVAQIAKEAGYLTVGV 178
+P L E AAE + A +G LV GG A VAQ A+ G TVGV
Sbjct: 33 PTHPELLELAAEVGSSI---AARGWTLVS------GGGNVSAMGAVAQAARAKGGHTVGV 83
Query: 179 VTYPFSFEGRKRSSQALEAIERLQKNVDTLIVIPN 213
+ +AL E + LIV
Sbjct: 84 IP------------KALVHRELADVDAAELIVTDT 106
>1ydh_A AT5G11950; structural genomics, protein structure initiative,
center for eukaryotic structural genomics, CESG; 2.15A
{Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4d_A
Length = 216
Score = 32.3 bits (74), Expect = 0.18
Identities = 19/96 (19%), Positives = 37/96 (38%), Gaps = 21/96 (21%)
Query: 118 TGGNPLLGEQAAEESKEVIANALKGSDLVFITAGMGGGTGSGAAPVVAQIAKEAGYLTVG 177
+G + + A E E+ + DLV+ GG G ++++ E G +G
Sbjct: 20 SGHREVFSDAAIELGNEL---VKRKIDLVY------GGGSVGLMGLISRRVYEGGLHVLG 70
Query: 178 VVTYPFSFEGRKRSSQALEAIERLQKNVDTLIVIPN 213
++ +AL IE + V + V+ +
Sbjct: 71 IIP------------KALMPIEISGETVGDVRVVAD 94
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate,
transport, ABC transport, virulence factor, receptor;
1.49A {Campylobacter jejuni}
Length = 259
Score = 30.4 bits (69), Expect = 0.85
Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 3/43 (6%)
Query: 145 LVFITAGMGGGTGSGAAPVVAQIAKEAGYLTVGV--VTYPFSF 185
+ + A + + A + I K G L VGV ++
Sbjct: 12 VFALGACVAFSNANAAEGKLESI-KSKGQLIVGVKNDVPHYAL 53
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics,
PSI-2, protein structure initiative; 1.40A {Lactococcus
lactis subsp}
Length = 219
Score = 30.0 bits (68), Expect = 1.0
Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 4/48 (8%)
Query: 129 AEESKEVIANALKGSDLVFITAGMGGGTG----SGAAPVVAQIAKEAG 172
+ + E +A L G D + +G GG + A + Q A++A
Sbjct: 50 VDWTPEEMAKQLHGMDAIINVSGSGGKSLLKVDLYGAVKLMQAAEKAE 97
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation,
flavin reductase, diaphorase, green HAEM binding
protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2
PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Length = 206
Score = 30.0 bits (68), Expect = 1.2
Identities = 8/47 (17%), Positives = 12/47 (25%), Gaps = 5/47 (10%)
Query: 131 ESKEVIANALKGSDLVFITAGMGGGTG-----SGAAPVVAQIAKEAG 172
+ + G D V + G S A + K G
Sbjct: 56 LQAADVDKTVAGQDAVIVLLGTRNDLSPTTVMSEGARNIVAAMKAHG 102
>2d1f_A Threonine synthase; amino acid synthesis, pyridoxal-5'-phosphate,
PLP, lyase; HET: PLP; 2.50A {Mycobacterium tuberculosis}
Length = 360
Score = 30.0 bits (68), Expect = 1.3
Identities = 11/58 (18%), Positives = 23/58 (39%), Gaps = 3/58 (5%)
Query: 155 GTGSGAAPVVAQIAKEAGYLTVGVVTYPFSFEGRKRSSQALEAIERLQKNVDTLIVIP 212
G + ++A + +++ P EG+K + A E ++ L D +P
Sbjct: 140 GNFDDCLELARKMAADFPTISLVNSVNPVRIEGQK--TAAFEIVDVLGTAPDV-HALP 194
>3rhz_A GTF3, nucleotide sugar synthetase-like protein;
glycosyltransferase, transferase; HET: UDP; 1.90A
{Streptococcus parasanguinis} PDB: 3qkw_A*
Length = 339
Score = 30.0 bits (67), Expect = 1.4
Identities = 15/68 (22%), Positives = 27/68 (39%), Gaps = 3/68 (4%)
Query: 146 VFITA--GMGGGTGSGAAPV-VAQIAKEAGYLTVGVVTYPFSFEGRKRSSQALEAIERLQ 202
V+IT G + + V +A GY +G+ Y + S+ L+ I
Sbjct: 13 VYITNINGQSIQSTAQLCQNTVTDVAVSLGYRELGIYCYQIHTDSESELSKRLDGIVAGL 72
Query: 203 KNVDTLIV 210
++ D +I
Sbjct: 73 RHGDVVIF 80
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics
center target 1957B, structural genomics, PSI; 2.70A
{Bacillus halodurans}
Length = 296
Score = 29.9 bits (68), Expect = 1.6
Identities = 8/47 (17%), Positives = 15/47 (31%), Gaps = 9/47 (19%)
Query: 136 IANAL--KGSDLVFITAGMGGGTGSGAAPVVAQIAKEAGYLTVGVVT 180
+ L + D+ + G V + K+ G +G V
Sbjct: 173 LFQELQKEQVDVFYPAGD---GYHVP----VVEAIKDQGDFAIGYVG 212
>1vjg_A Putative lipase from the G-D-S-L family; structural genomics center
for structural genomics, JCSG, protein structure INI
PSI, hydrolase; 2.01A {Nostoc SP} SCOP: c.23.10.6 PDB:
1z8h_A
Length = 218
Score = 29.5 bits (66), Expect = 1.8
Identities = 23/112 (20%), Positives = 37/112 (33%), Gaps = 12/112 (10%)
Query: 148 ITAGMGGGTGSGAAPVVAQIAKEAGYLTVGVVTYPFSFEGRKRSSQAL-----EAIERLQ 202
G G G V A + GY V Y SS E RL
Sbjct: 30 FVNGTGDPECLGWTGRVCVNANKKGY---DVTYYNLGIRRD-TSSDIAKRWLQEVSLRLH 85
Query: 203 KNVDTLIVIP---NDRLLDITDEQTALQDAFLLADDVLRQGVQGISDIITIP 251
K ++L+V ND L+ + ++ + ++L Q + ++ P
Sbjct: 86 KEYNSLVVFSFGLNDTTLENGKPRVSIAETIKNTREILTQAKKLYPVLMISP 137
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid;
transport protein, solute-binding protein; 2.26A
{Neisseria gonorrhoeae}
Length = 291
Score = 29.7 bits (67), Expect = 1.9
Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 3/49 (6%)
Query: 139 ALKGSDLVFITAGMGGGTGSGAAPVVAQIAKEAGYLTVGVV--TYPFSF 185
+ G +G + S A VA I KE G + +GV PF +
Sbjct: 23 HMVGLTAAGGGSGDAQSSQSSGAATVAAI-KEKGVIRIGVFGDKPPFGY 70
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease,
virulence factor, H; HET: STA; 1.85A {Candida
parapsilosis} PDB: 3tne_A*
Length = 339
Score = 29.2 bits (66), Expect = 2.5
Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 26/117 (22%)
Query: 245 SDIITIPGLV--NVDFADVKAVMKDSGTAMLGVGVSSSKNRAEEAAEQATLAPLIGSSIQ 302
D +TI G+ ADV D G +LG+G +S + +S +
Sbjct: 90 KDTVTINGVSITGQQIADVTQTSVDQG--ILGIGYTS-------------NEAVYDTSGR 134
Query: 303 SATGVVYNITGGKDITLQEVNRVSQVVTS--LADPSAN---IIFGAVVDDRYNGEIH 354
T N+ +TL++ ++ S L PSA IIFG V + +Y+G++
Sbjct: 135 QTTPNYDNVP----VTLKKQGKIRTNAYSLYLNSPSAETGTIIFGGVDNAKYSGKLV 187
>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis
baeyer-villiger oxidation green CH monooxygenase,
oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP}
PDB: 3gwd_A* 3ucl_A*
Length = 540
Score = 29.1 bits (66), Expect = 3.1
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 155 GTGSGAAPVVAQIAKEAGYLTV 176
GTGS V+ +A E +LTV
Sbjct: 185 GTGSTGQQVITSLAPEVEHLTV 206
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain
dehydrogenase reductase, flavonoi oxidoreductase; HET:
NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*
Length = 346
Score = 28.8 bits (64), Expect = 3.2
Identities = 19/160 (11%), Positives = 49/160 (30%), Gaps = 35/160 (21%)
Query: 52 SFAPMETAKIKVVGVGGGGNNAVNRMIGSGL--QGVDFYAI------NTDSQALLQSAAE 103
+ +P+ + K +V+ G G + + + + Y + + + ++ +
Sbjct: 2 TVSPVPSPKGRVLIAGATGF--IGQFVATASLDAHRPTYILARPGPRSPSKAKIFKALED 59
Query: 104 NPLQI--GDLLTRGLGTGGNPLLGEQAAEESKEVIANALKGSDLVFITAGMGGGTGSGAA 161
I G + +E + LK ++ + + +GG +
Sbjct: 60 KGAIIVYGLI-------------------NEQEAMEKILKEHEIDIVVSTVGGESILDQI 100
Query: 162 PVVAQIAKEAGYLTVGVVTYPFSFEGRKRSSQALEAIERL 201
+V + K G P F + +E +
Sbjct: 101 ALV-KAMKAVG---TIKRFLPSEFGHDVNRADPVEPGLNM 136
>1xt8_A Putative amino-acid transporter periplasmic solut protein; ABC
transport, cysteine uptake; 2.00A {Campylobacter jejuni}
SCOP: c.94.1.1
Length = 292
Score = 28.9 bits (65), Expect = 3.3
Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 145 LVFITAGMGGGTGSGAAPVVAQIAKEAGYLTVGVVT--YPFSF 185
+ GG + S + +I K+ G + +GV PF +
Sbjct: 18 QPAMAMASGGNSDSKTLNSLDKI-KQNGVVRIGVFGDKPPFGY 59
>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome,
NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A
{Citrullus lanatus} PDB: 1sev_A
Length = 326
Score = 28.8 bits (65), Expect = 3.3
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 132 SKEVIANALKGSDLVFITAGM 152
++ + AL G DL+ + AG+
Sbjct: 66 GQQQLEAALTGMDLIIVPAGV 86
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics,
APC7755, NADP, P protein structure initiative; HET: MSE
NAP; 2.10A {Bacillus halodurans}
Length = 236
Score = 28.5 bits (64), Expect = 3.6
Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 8/47 (17%)
Query: 134 EVIANALKGSDLVFITAGMGGGTGSGAAPVV--------AQIAKEAG 172
E ++A D V AG G TG+ ++ Q A++ G
Sbjct: 76 EDFSHAFASIDAVVFAAGSGPHTGADKTILIDLWGAIKTIQEAEKRG 122
>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT;
1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*
Length = 314
Score = 28.7 bits (65), Expect = 3.6
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 133 KEVIANALKGSDLVFITAGM 152
E + + LKG D+V I AG+
Sbjct: 59 PEQLPDCLKGCDVVVIPAGV 78
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Length = 105
Score = 27.2 bits (61), Expect = 3.8
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 232 LADDVLRQGVQGISDIITIPGL-VNVDF---ADVKAVMKDSG 269
L D+ +RQG++ S+ T P L V + D+ +K++G
Sbjct: 55 LEDEEVRQGLKAYSNWPTYPQLYVKGELVGGLDIVKELKENG 96
>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, unknown function;
HET: MNB; 2.30A {Shigella flexneri 2A}
Length = 236
Score = 28.2 bits (63), Expect = 4.0
Identities = 9/50 (18%), Positives = 16/50 (32%), Gaps = 2/50 (4%)
Query: 131 ESKEVIANALKGSDLVFITAGMGGGTGSGAAPVVAQIAKEAGYLTVGVVT 180
+ + A++G D+V+ G A V K + V
Sbjct: 77 LNHAALKQAMQGQDIVYANL--TGEDLDIQANSVIAAMKACDVKRLIFVL 124
>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A
{Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A*
2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*
Length = 542
Score = 28.7 bits (65), Expect = 4.1
Identities = 12/22 (54%), Positives = 13/22 (59%)
Query: 155 GTGSGAAPVVAQIAKEAGYLTV 176
GTGS V QIAK+A L V
Sbjct: 193 GTGSSGIQVSPQIAKQAAELFV 214
>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD
NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A*
4aos_A* 4ap1_A*
Length = 549
Score = 28.7 bits (65), Expect = 4.4
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 155 GTGSGAAPVVAQIAKEAGYLTV 176
GTGS + IA++A L V
Sbjct: 198 GTGSSGIQSIPIIAEQAEQLFV 219
>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD,
oxidoreductase, tricarboxylic acid cycle; 1.45A
{Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A*
1ib6_A* 1ie3_A* 4e0b_A*
Length = 312
Score = 28.3 bits (64), Expect = 4.7
Identities = 8/17 (47%), Positives = 13/17 (76%)
Query: 136 IANALKGSDLVFITAGM 152
AL+G+D+V I+AG+
Sbjct: 63 ATPALEGADVVLISAGV 79
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron
transport, mitochondrion, redox-active center, transit
peptide, transport; 1.67A {Saccharomyces cerevisiae}
Length = 121
Score = 26.9 bits (60), Expect = 5.2
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
Query: 232 LADDVLRQGVQGISDIITIPGL-VNVDF---ADVKAVMKDSG--TAMLGVGVSSSKNRAE 285
L D LR+G++ S+ TIP L VN +F DV M SG +L + E
Sbjct: 57 LEDPELREGIKEFSEWPTIPQLYVNKEFIGGCDVITSMARSGELADLLEEAQALVPEEEE 116
Query: 286 EAAEQ 290
E ++
Sbjct: 117 ETKDR 121
>2qjw_A Uncharacterized protein XCC1541; putative hydrolase of the
alpha/beta superfamily, structural genomics; HET: MSE
TLA P6G; 1.35A {Xanthomonas campestris PV}
Length = 176
Score = 27.6 bits (61), Expect = 5.4
Identities = 9/68 (13%), Positives = 21/68 (30%), Gaps = 8/68 (11%)
Query: 151 GMGGGTGSGAAPVVAQIAKEAGYLT-------VGVVTYPFSF-EGRKRSSQALEAIERLQ 202
G G + +A++A+ G+ + + R R + LE
Sbjct: 12 GFESGPDALKVTALAEVAERLGWTHERPDFTDLDARRDLGQLGDVRGRLQRLLEIARAAT 71
Query: 203 KNVDTLIV 210
+ ++
Sbjct: 72 EKGPVVLA 79
>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD;
1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A*
3up4_A* 3up5_A*
Length = 545
Score = 28.3 bits (64), Expect = 5.6
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 155 GTGSGAAPVVAQIAKEAGYLTV 176
GTG+ ++ A+ A L V
Sbjct: 192 GTGATGVQIIPIAAETAKELYV 213
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: c.47.1.1
Length = 109
Score = 26.8 bits (60), Expect = 5.7
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 232 LADDVLRQGVQGISDIITIPGL-VNVDF---ADVKAVMKDSG 269
L D+ +RQG++ S+ T P L V D D+ +KD+G
Sbjct: 53 LEDEEVRQGLKTFSNWPTYPQLYVRGDLVGGLDIVKELKDNG 94
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein,
ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus
radiodurans} PDB: 3gp8_A 3gpl_A*
Length = 574
Score = 28.1 bits (63), Expect = 6.1
Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 5/46 (10%)
Query: 124 LGEQAAEESKEVIANALKGSDLVFITAGMGGGTGSGAAPVVAQIAK 169
+ +EE V+ G LV +T GG G+G + +A
Sbjct: 186 ARKGLSEEQASVLDQLA-GHRLVVLT----GGPGTGKSTTTKAVAD 226
>1uz5_A MOEA protein, 402AA long hypothetical molybdopterin biosynthesis
MOEA protein; MOEA molybdopterin, MOCF biosynthesis;
2.05A {Pyrococcus horikoshii} SCOP: b.85.6.1 b.103.1.1
c.57.1.2
Length = 402
Score = 27.9 bits (63), Expect = 6.2
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
Query: 130 EESKEVIANALKGSDLVFITAGMGGGTGSGAAPVVAQIAKEAG 172
E K +I A+ D+V I+ GG G + A + +E G
Sbjct: 234 ESLKALIEKAVNVGDVVVIS----GGASGGTKDLTASVIEELG 272
>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A
{Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6
Length = 335
Score = 27.5 bits (62), Expect = 7.7
Identities = 10/74 (13%), Positives = 29/74 (39%), Gaps = 4/74 (5%)
Query: 187 GRKRSSQALEAIERLQKNVDTLIVIPNDRLLDITDEQTALQDA--FLLA--DDVLRQGVQ 242
G + ++ L++I +++ + + + + L++A LL D + +
Sbjct: 30 GTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLGVSTDGVLPVMS 89
Query: 243 GISDIITIPGLVNV 256
I + +V +
Sbjct: 90 RILPYLKDQYIVLI 103
>2q88_A EHUB, putative ABC transporter amino acid-binding prote;
substrate-binding protein, compatible solues,
ABC-transporte osmoprotection; HET: 4CS; 1.90A
{Sinorhizobium meliloti} PDB: 2q89_A*
Length = 257
Score = 27.3 bits (61), Expect = 7.9
Identities = 5/19 (26%), Positives = 9/19 (47%), Gaps = 1/19 (5%)
Query: 168 AKEAGYLTVGVVTY-PFSF 185
KE G+ + + PF+
Sbjct: 9 LKEQGFARIAIANEPPFTA 27
>2nx4_A Transcriptional regulator, TETR family protein; HTH DNA binding
motif, structural genomics, PSI-2, Pro structure
initiative; 1.70A {Rhodococcus SP}
Length = 194
Score = 27.0 bits (60), Expect = 8.4
Identities = 16/95 (16%), Positives = 32/95 (33%), Gaps = 23/95 (24%)
Query: 146 VFITAGMGGGTGSGAAPVVAQIAKEAGYLTVGVVTYPFSFEGRKRSSQAL--EAIERLQK 203
+ G+ + IA EAG T G +++ F + + E + +
Sbjct: 22 LIAARGIEAAN-------MRDIATEAG-YTNGALSHYF------AGKDEILRTSYEHISE 67
Query: 204 NVDTLIVIPNDRLLDITDEQTALQDAFLLADDVLR 238
D R+ + + T L +L +V+
Sbjct: 68 ATD-------RRIAEALGDATGLDALRILCREVMP 95
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Length = 111
Score = 26.4 bits (59), Expect = 8.5
Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Query: 232 LADDVLRQGVQGISDIITIPGL-VNVDF---ADVKAVMKDSG 269
+D+ +RQG++ S T P L V+ + D+ ++ S
Sbjct: 54 FSDEEVRQGLKAYSSWPTYPQLYVSGELIGGLDIIKELEASE 95
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL
redox-active center, transit peptide, transport,
oxidoreduc; 2.40A {Arabidopsis thaliana}
Length = 109
Score = 26.4 bits (59), Expect = 8.7
Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Query: 232 LADDVLRQGVQGISDIITIPGL-VNVDF---ADVKAVMKDSG 269
L +++LRQG++ S+ T P L + +F D+ +G
Sbjct: 56 LENEMLRQGLKEYSNWPTFPQLYIGGEFFGGCDITLEAFKTG 97
>3sgh_A SUSD homolog; alpha-alpha superhelix, structural genomics, joint
center FO structural genomics, JCSG, protein structure
initiative; HET: MSE; 1.70A {Bacteroides
thetaiotaomicron}
Length = 499
Score = 27.5 bits (60), Expect = 9.2
Identities = 18/130 (13%), Positives = 37/130 (28%), Gaps = 6/130 (4%)
Query: 69 GGNNAVNRMIGSGLQGVDFYAINTDSQALLQSAAENPLQIGDLLTRGLGTGGNPLLGEQA 128
G+ + F A + + AAE + +G GG+ A
Sbjct: 287 SGSAEIPEPTVYANYSKLFIATDKTLPQPVMYAAEAAFLRAEGALKGWNMGGD------A 340
Query: 129 AEESKEVIANALKGSDLVFITAGMGGGTGSGAAPVVAQIAKEAGYLTVGVVTYPFSFEGR 188
++ + + + + + T V IA G + +E
Sbjct: 341 KTFYEKGVRLSFEEFGVSGADDYLADATSIPGNYVDNLIAGHTGNNYTNQSSITIKWEDG 400
Query: 189 KRSSQALEAI 198
++ LE +
Sbjct: 401 ADDAKKLERV 410
>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific]
1,mitochondrial; oxidoreductase, thioester reduction,
fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2
c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A
Length = 364
Score = 27.3 bits (61), Expect = 9.7
Identities = 8/43 (18%), Positives = 13/43 (30%), Gaps = 5/43 (11%)
Query: 137 ANALKGSDLVFITAGMGGGTGSGAAPVVAQIAKEAGYLTVGVV 179
G D G G +QI K + ++ V+
Sbjct: 162 VKLTPGKDWFIQNGGTSAV---GKY--ASQIGKLLNFNSISVI 199
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.130 0.356
Gapped
Lambda K H
0.267 0.0724 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,113,132
Number of extensions: 398056
Number of successful extensions: 1027
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1001
Number of HSP's successfully gapped: 77
Length of query: 415
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 319
Effective length of database: 4,021,377
Effective search space: 1282819263
Effective search space used: 1282819263
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.1 bits)