RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 014946
(415 letters)
>d1ofua1 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 198
Score = 252 bits (645), Expect = 1e-83
Identities = 113/198 (57%), Positives = 143/198 (72%)
Query: 58 TAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSAAENPLQIGDLLTRGLG 117
TA IKV+GVGGGG NAVN M + ++GV+F NTD+QAL AA LQ+G +T+GLG
Sbjct: 1 TAVIKVIGVGGGGGNAVNHMAKNNVEGVEFICANTDAQALKNIAARTVLQLGPGVTKGLG 60
Query: 118 TGGNPLLGEQAAEESKEVIANALKGSDLVFITAGMGGGTGSGAAPVVAQIAKEAGYLTVG 177
G NP +G QAA E +E I+ L+G+D+VFIT GMGGGTG+GAAP++A++AKE G LTV
Sbjct: 61 AGANPEVGRQAALEDRERISEVLEGADMVFITTGMGGGTGTGAAPIIAEVAKEMGILTVA 120
Query: 178 VVTYPFSFEGRKRSSQALEAIERLQKNVDTLIVIPNDRLLDITDEQTALQDAFLLADDVL 237
VVT PF FEGRKR A E I L ++VD+LI IPN++LL I + +L AF ADDVL
Sbjct: 121 VVTRPFPFEGRKRMQIADEGIRALAESVDSLITIPNEKLLTILGKDASLLAAFAKADDVL 180
Query: 238 RQGVQGISDIITIPGLVN 255
V+GISDII PG++N
Sbjct: 181 AGAVRGISDIIKRPGMIN 198
>d1rq2a1 c.32.1.1 (A:8-205) Cell-division protein FtsZ
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 198
Score = 245 bits (626), Expect = 9e-81
Identities = 122/197 (61%), Positives = 153/197 (77%)
Query: 59 AKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSAAENPLQIGDLLTRGLGT 118
A IKVVG+GGGG NAVNRMI GL+GV+F AINTD+QALL S A+ L +G TRGLG
Sbjct: 2 AVIKVVGIGGGGVNAVNRMIEQGLKGVEFIAINTDAQALLMSDADVKLDVGRDSTRGLGA 61
Query: 119 GGNPLLGEQAAEESKEVIANALKGSDLVFITAGMGGGTGSGAAPVVAQIAKEAGYLTVGV 178
G +P +G +AAE++K+ I L+G+D+VF+TAG GGGTG+G APVVA IA++ G LTVGV
Sbjct: 62 GADPEVGRKAAEDAKDEIEELLRGADMVFVTAGEGGGTGTGGAPVVASIARKLGALTVGV 121
Query: 179 VTYPFSFEGRKRSSQALEAIERLQKNVDTLIVIPNDRLLDITDEQTALQDAFLLADDVLR 238
VT PFSFEG++RS+QA I L+++ DTLIVIPNDRLL + D +L DAF AD+VL
Sbjct: 122 VTRPFSFEGKRRSNQAENGIAALRESCDTLIVIPNDRLLQMGDAAVSLMDAFRSADEVLL 181
Query: 239 QGVQGISDIITIPGLVN 255
GVQGI+D+IT PGL+N
Sbjct: 182 NGVQGITDLITTPGLIN 198
>d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 209
Score = 230 bits (587), Expect = 8e-75
Identities = 102/195 (52%), Positives = 141/195 (72%), Gaps = 1/195 (0%)
Query: 59 AKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSAAENPLQIGDLLTRGLGT 118
AKI VVG GG GNN + R+ G++G AINTD+Q L+++ A+ + IG LTRGLG
Sbjct: 16 AKITVVGCGGAGNNTITRLKMEGIEGAKTVAINTDAQQLIRTKADKKILIGKKLTRGLGA 75
Query: 119 GGNPLLGEQAAEESKEVIANALKGSDLVFITAGMGGGTGSGAAPVVAQIAKEAGYLTVGV 178
GGNP +GE+AA+ES E I A++ SD+VFIT G+GGGTG+G+APVVA+I+K+ G LTV V
Sbjct: 76 GGNPKIGEEAAKESAEEIKAAIQDSDMVFITCGLGGGTGTGSAPVVAEISKKIGALTVAV 135
Query: 179 VTYPFSFEGRKRSSQALEAIERLQKNVDTLIVIPNDRLLDITDEQTALQDAFLLADDVLR 238
VT PF EG+ R A+E +ERL+++ DTL+VIPN++L +I L+ AF +AD+VL
Sbjct: 136 VTLPFVMEGKVRMKNAMEGLERLKQHTDTLVVIPNEKLFEI-VPNMPLKLAFKVADEVLI 194
Query: 239 QGVQGISDIITIPGL 253
V+G+ ++IT GL
Sbjct: 195 NAVKGLVELITKDGL 209
>d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga
maritima [TaxId: 2336]}
Length = 194
Score = 219 bits (558), Expect = 1e-70
Identities = 109/193 (56%), Positives = 146/193 (75%)
Query: 60 KIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSAAENPLQIGDLLTRGLGTG 119
KIKV+GVGG GNNA+NRMI G+ GV+F A+NTD Q L S A+ +QIG+ +TRGLG G
Sbjct: 2 KIKVIGVGGAGNNAINRMIEIGIHGVEFVAVNTDLQVLEASNADVKIQIGENITRGLGAG 61
Query: 120 GNPLLGEQAAEESKEVIANALKGSDLVFITAGMGGGTGSGAAPVVAQIAKEAGYLTVGVV 179
G P +GEQAA ES+E I L+ + +VFITAG GGGTG+GA+PV+A+IAKE G LTV +V
Sbjct: 62 GRPEIGEQAALESEEKIREVLQDTHMVFITAGFGGGTGTGASPVIAKIAKEMGILTVAIV 121
Query: 180 TYPFSFEGRKRSSQALEAIERLQKNVDTLIVIPNDRLLDITDEQTALQDAFLLADDVLRQ 239
T PF FEG +R +A+E +++L+K+VDTLI I N++L++ ++DAFL AD+ L Q
Sbjct: 122 TTPFYFEGPERLKKAIEGLKKLRKHVDTLIKISNNKLMEELPRDVKIKDAFLKADETLHQ 181
Query: 240 GVQGISDIITIPG 252
GV+GIS++IT G
Sbjct: 182 GVKGISELITKRG 194
>d1w5fa2 d.79.2.1 (A:216-336) Cell-division protein FtsZ {Thermotoga
maritima [TaxId: 2336]}
Length = 121
Score = 127 bits (320), Expect = 2e-36
Identities = 40/113 (35%), Positives = 70/113 (61%), Gaps = 1/113 (0%)
Query: 254 VNVDFADVKAVMKDSGTAMLGVGVSSSKNRAEEAAEQATLAPLIGSSIQSATGVVYNITG 313
+ FA +++VMKD+G A+LG+GV ++RA EAA++A + LI +++A+ +V+NIT
Sbjct: 4 LTSRFARIESVMKDAGAAILGIGVGKGEHRAREAAKKAMESKLIEHPVENASSIVFNITA 63
Query: 314 GKDITLQEVNRVSQVVTSLADPSANIIFGAVVDDRY-NGEIHVTIIATGFSQS 365
+I ++EV+ + ++ + A++ FG + DD + EI V IAT F
Sbjct: 64 PSNIRMEEVHEAAMIIRQNSSEDADVKFGLIFDDEVPDDEIRVIFIATRFPDE 116
>d2vapa2 d.79.2.1 (A:232-354) Cell-division protein FtsZ {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 123
Score = 122 bits (306), Expect = 2e-34
Identities = 49/116 (42%), Positives = 72/116 (62%)
Query: 254 VNVDFADVKAVMKDSGTAMLGVGVSSSKNRAEEAAEQATLAPLIGSSIQSATGVVYNITG 313
+NVDFADVKAVM + G AM+G+G S S+ RA+EA A +PL+ I ATG + ++ G
Sbjct: 1 INVDFADVKAVMNNGGLAMIGIGESDSEKRAKEAVSMALNSPLLDVDIDGATGALIHVMG 60
Query: 314 GKDITLQEVNRVSQVVTSLADPSANIIFGAVVDDRYNGEIHVTIIATGFSQSFQKT 369
+D+TL+E V V+S DP+A II+GA +D+ + V ++ TG + T
Sbjct: 61 PEDLTLEEAREVVATVSSRLDPNATIIWGATIDENLENTVRVLLVITGVQSRIEFT 116
>d1rq2a2 d.79.2.1 (A:206-312) Cell-division protein FtsZ
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 107
Score = 121 bits (304), Expect = 3e-34
Identities = 50/107 (46%), Positives = 73/107 (68%)
Query: 256 VDFADVKAVMKDSGTAMLGVGVSSSKNRAEEAAEQATLAPLIGSSIQSATGVVYNITGGK 315
VDFADVK +M +GTA++G+G + + R+ +AAE A +PL+ +S++ A GV+ +I GG
Sbjct: 1 VDFADVKGIMSGAGTALMGIGSARGEGRSLKAAEIAINSPLLEASMEGAQGVLMSIAGGS 60
Query: 316 DITLQEVNRVSQVVTSLADPSANIIFGAVVDDRYNGEIHVTIIATGF 362
D+ L E+N + +V A P ANIIFG V+DD E+ VT+IA GF
Sbjct: 61 DLGLFEINEAASLVQDAAHPDANIIFGTVIDDSLGDEVRVTVIAAGF 107
>d1ofua2 d.79.2.1 (A:209-317) Cell-division protein FtsZ
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 109
Score = 117 bits (295), Expect = 7e-33
Identities = 47/108 (43%), Positives = 65/108 (60%), Gaps = 1/108 (0%)
Query: 256 VDFADVKAVMKDSGTAMLGVGVSSSKNRAEEAAEQATLAPLIGS-SIQSATGVVYNITGG 314
VDFADVK VM + G AM+G G +S NRA EA E A PL+ ++Q A G++ NIT G
Sbjct: 1 VDFADVKTVMSEMGMAMMGTGCASGPNRAREATEAAIRNPLLEDVNLQGARGILVNITAG 60
Query: 315 KDITLQEVNRVSQVVTSLADPSANIIFGAVVDDRYNGEIHVTIIATGF 362
D++L E + V ++ A A + G V+D E+HVT++ATG
Sbjct: 61 PDLSLGEYSDVGNIIEQFASEHATVKVGTVIDADMRDELHVTVVATGL 108
>d1o58a_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine
synthase) {Thermotoga maritima [TaxId: 2336]}
Length = 293
Score = 30.1 bits (67), Expect = 0.48
Identities = 24/113 (21%), Positives = 47/113 (41%), Gaps = 6/113 (5%)
Query: 63 VVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSAAENPLQIGDLLTRGLGTGGNP 122
V GVG GG + + G G + + +S + Q G +G+G G P
Sbjct: 164 VAGVGTGGTISGVGRVLKGFFGNGVKIVAVEPA---KSPVLSGGQPGKHAIQGIGAGFVP 220
Query: 123 LLGEQAAEESKEVIAN--ALKGSDLVFITAGMGGGTGSGAAPVVA-QIAKEAG 172
+ +++ + + + A + + + G+ G SGA A ++A++ G
Sbjct: 221 KILDRSVIDEVITVEDEEAYEMARYLAKKEGLLVGISSGANVAAALKVAQKLG 273
>d1tubb1 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 243
Score = 29.9 bits (67), Expect = 0.53
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
Query: 147 FITAGMGGGTGSG-AAPVVAQIAKEAGY---LTVGVVTYPFSFEGRKRSSQALEAIERLQ 202
+T +GGGTGSG ++++I +E T VV P + A ++ +L
Sbjct: 134 QLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLV 193
Query: 203 KNVDTLIVIPNDRLLDITDEQ 223
+N D I N+ L DI
Sbjct: 194 ENTDETYCIDNEALYDICFRT 214
>d1vjga_ c.23.10.6 (A:) Hypothetical protein alr1529 {Nostoc sp. pcc
7120 [TaxId: 103690]}
Length = 201
Score = 29.4 bits (64), Expect = 0.69
Identities = 14/66 (21%), Positives = 19/66 (28%), Gaps = 3/66 (4%)
Query: 148 ITAGMGGGTGSGAAPVVAQIAKEAGYLTVGVVTYPFSFEG--RKRSSQALEAIERLQKNV 205
G G G V A + GY V + E RL K
Sbjct: 14 FVNGTGDPECLGWTGRVCVNANKKGY-DVTYYNLGIRRDTSSDIAKRWLQEVSLRLHKEY 72
Query: 206 DTLIVI 211
++L+V
Sbjct: 73 NSLVVF 78
>d2b5ic2 b.1.2.1 (C:34-129) Cytokine receptor common gamma chain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 27.9 bits (62), Expect = 0.72
Identities = 9/53 (16%), Positives = 17/53 (32%), Gaps = 2/53 (3%)
Query: 1 MATLQVTNPNELISSSTSFANSLHYNNSRSLSRKTMRKSAWKRCRSGNISCSF 53
+ + T + T+ +LHY S + K + S + C
Sbjct: 12 VEYMNCTWQSSSEPQPTNL--TLHYWYKNSDNDKVQKCSHYLFSEEITSGCQL 62
>d1tuba1 c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 245
Score = 29.2 bits (65), Expect = 0.87
Identities = 14/85 (16%), Positives = 33/85 (38%), Gaps = 4/85 (4%)
Query: 147 FITAGMGGGTGSG-AAPVVAQIAKEAGY---LTVGVVTYPFSFEGRKRSSQALEAIERLQ 202
+ GGGTGSG + ++ +++ + G L + P ++
Sbjct: 136 SVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTL 195
Query: 203 KNVDTLIVIPNDRLLDITDEQTALQ 227
++ D ++ N+ + DI ++
Sbjct: 196 EHSDCAFMVDNEAIYDICRRNLDIE 220
>d1n62b2 d.133.1.1 (B:147-809) Carbon monoxide (CO) dehydrogenase
molybdoprotein {Oligotropha carboxidovorans, formerly
Pseudomonas carboxydovorans [TaxId: 40137]}
Length = 663
Score = 27.7 bits (60), Expect = 3.5
Identities = 8/44 (18%), Positives = 15/44 (34%), Gaps = 2/44 (4%)
Query: 127 QAAEESKEVIANAL--KGSDLVFITAGMGGGTGSGAAPVVAQIA 168
QA + V++ + I +GGG G+ +
Sbjct: 94 QAPHVIRTVVSLISGLPEHKIHVIAPDIGGGFGNKVGAYSGYVC 137
>d1rh1a1 b.110.1.1 (A:10-312) Colicin B N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 303
Score = 26.9 bits (59), Expect = 4.1
Identities = 18/83 (21%), Positives = 31/83 (37%), Gaps = 4/83 (4%)
Query: 197 AIERLQKNVDTLIVIPNDRLLDITDEQTALQDAFLLAD----DVLRQGVQGISDIITIPG 252
A QK + ++ +++ DI Q + D+++ G Q ++ I IP
Sbjct: 122 ASGNEQKIIRLMVTQQLEQVTDIPASQLPAAGNNVPVKYRLTDLMQNGTQYMAIIGGIPM 181
Query: 253 LVNVDFADVKAVMKDSGTAMLGV 275
V V A GT + V
Sbjct: 182 TVPVVDAVPVPDRSRPGTNIKDV 204
>g1qqp.1 b.121.4.1 (4:,2:) Aphthovirus (Foot-and-mouth disease
virus) coat proteins {FMDV (Foot-and-mouth disease
virus), strain bfs, 1860 [TaxId: 12110]}
Length = 289
Score = 26.8 bits (59), Expect = 4.8
Identities = 15/105 (14%), Positives = 35/105 (33%), Gaps = 8/105 (7%)
Query: 72 NAVNRMIGSGLQGVDFYAINTDSQALLQSAAENPLQIGDLLTRGLGTGGNPLLGEQAAEE 131
N+++ +G+ +TD+ + + +N L + LL ++ EE
Sbjct: 18 NSMDTQLGNDAISGGSNEGSTDTTSTHTTNTQNNDWFSKLASSAFSGLFGALLADKKTEE 77
Query: 132 SKEVIANALKGSDLV-FITAGMGGGTGSGAAPVVAQIAKEAGYLT 175
+ + D + G T + V A +++
Sbjct: 78 TTLL-------EDRILTTRNGHTTSTTQSSVGVTYGYATAEDFVS 115
>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA
{Bacillus subtilis [TaxId: 1423]}
Length = 167
Score = 26.1 bits (57), Expect = 5.4
Identities = 12/98 (12%), Positives = 25/98 (25%), Gaps = 8/98 (8%)
Query: 60 KIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSAAENPLQIGDLLTRGLGTG 119
+V + GGG+ ++ L ++ L + E +I +
Sbjct: 3 SFSIV-IAGGGSTFTPGIVLMLLDHLE--EFPIRKLKLYDNDKERQDRIAGACDVFIREK 59
Query: 120 GNPLLGEQAAEESKEVIANALKGSDLVFITAGMGGGTG 157
+ + A D V +G
Sbjct: 60 APDIEFAATTD-----PEEAFTDVDFVMAHIRVGKYAM 92
>d3c9fa2 d.159.1.2 (A:16-337) 5'-nucleotidase (syn. UDP-sugar
hydrolase), N-terminal domain {Candida albicans [TaxId:
5476]}
Length = 322
Score = 26.6 bits (58), Expect = 5.9
Identities = 16/95 (16%), Positives = 25/95 (26%), Gaps = 9/95 (9%)
Query: 185 FEGRKRSSQALEAIERLQKNVDTLIVIPNDRLLDITDEQTALQDAFLLADDVLRQGVQGI 244
+ E L+ VD +I++ + + E + LRQ
Sbjct: 174 VTPMAETIHEPWFQEALKHEVDLIIIVGHTPISHNWGEFYQV-------HQYLRQFFPDT 226
Query: 245 SDIITIPGLVNVDFA--DVKAVMKDSGTAMLGVGV 277
DF D + SG VG
Sbjct: 227 IIQYFGGHSHIRDFTVFDSLSTGLQSGRYCETVGW 261
>d2r8oa3 c.48.1.1 (A:528-663) Transketolase (TK), C-domain
{Escherichia coli [TaxId: 562]}
Length = 136
Score = 25.6 bits (55), Expect = 6.7
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 337 ANIIFGAVVDDRYNGEIHVTIIATG 361
ANI G V G+ + IATG
Sbjct: 7 ANIARGGYVLKDCAGQPELIFIATG 31
>d1s16a1 d.14.1.3 (A:1217-1383) Topoisomerase IV subunit B
{Escherichia coli [TaxId: 562]}
Length = 167
Score = 25.8 bits (56), Expect = 7.1
Identities = 8/38 (21%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 354 HVTIIATGFSQSFQKTLLTNPKAAK-VLDKAAGSQESR 390
++ +F L N +AA+ + + A S + R
Sbjct: 126 CAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRR 163
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.313 0.130 0.356
Gapped
Lambda K H
0.267 0.0590 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,395,851
Number of extensions: 64074
Number of successful extensions: 184
Number of sequences better than 10.0: 1
Number of HSP's gapped: 181
Number of HSP's successfully gapped: 30
Length of query: 415
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 327
Effective length of database: 1,199,356
Effective search space: 392189412
Effective search space used: 392189412
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (24.9 bits)