Query 014947
Match_columns 415
No_of_seqs 360 out of 1776
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 01:37:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014947.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014947hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11623 pcnB poly(A) polymera 100.0 1.9E-59 4.1E-64 484.0 28.5 281 1-291 80-376 (472)
2 TIGR01942 pcnB poly(A) polymer 100.0 2.5E-57 5.4E-62 462.8 28.9 280 1-293 43-332 (410)
3 KOG2159 tRNA nucleotidyltransf 100.0 2.1E-52 4.6E-57 421.2 13.4 351 1-358 42-409 (416)
4 COG0617 PcnB tRNA nucleotidylt 100.0 1.1E-49 2.4E-54 410.2 16.3 198 1-207 36-234 (412)
5 PRK13299 tRNA CCA-pyrophosphor 100.0 2.3E-48 4.9E-53 398.4 24.5 196 1-205 34-229 (394)
6 TIGR02692 tRNA_CCA_actino tRNA 100.0 3.3E-46 7.1E-51 390.2 21.3 222 1-233 41-270 (466)
7 PRK13298 tRNA CCA-pyrophosphor 100.0 8.1E-44 1.8E-48 364.6 21.9 220 1-234 14-241 (417)
8 PRK10885 cca multifunctional t 100.0 4.5E-43 9.7E-48 360.8 21.5 195 1-209 14-215 (409)
9 PRK13297 tRNA CCA-pyrophosphor 100.0 6.9E-43 1.5E-47 351.4 17.2 192 1-207 25-222 (364)
10 PRK13296 tRNA CCA-pyrophosphor 100.0 2.3E-40 5.1E-45 331.0 18.7 191 1-208 14-212 (360)
11 PF01743 PolyA_pol: Poly A pol 99.9 9.7E-26 2.1E-30 197.2 9.2 111 1-118 12-126 (126)
12 cd05398 NT_ClassII-CCAase Nucl 99.9 1.2E-23 2.6E-28 187.0 9.8 105 1-114 30-139 (139)
13 PRK03381 PII uridylyl-transfer 99.4 4.2E-13 9.1E-18 148.8 12.1 110 112-223 313-426 (774)
14 PF12627 PolyA_pol_RNAbd: Prob 99.4 2.7E-13 5.9E-18 104.4 6.4 62 145-206 1-62 (64)
15 TIGR01693 UTase_glnD [Protein- 99.4 5.7E-13 1.2E-17 149.3 10.5 118 112-232 319-442 (850)
16 PRK00227 glnD PII uridylyl-tra 99.4 1.3E-12 2.8E-17 142.6 12.4 108 112-223 275-386 (693)
17 PRK00275 glnD PII uridylyl-tra 99.4 1.2E-12 2.7E-17 147.1 9.8 130 102-234 339-476 (895)
18 PRK03059 PII uridylyl-transfer 99.3 4.6E-12 9.9E-17 141.9 10.3 120 110-232 327-454 (856)
19 PRK05092 PII uridylyl-transfer 99.2 1.8E-11 3.9E-16 138.5 8.8 117 112-233 384-508 (931)
20 PHA01806 hypothetical protein 99.2 2.6E-11 5.7E-16 112.1 7.0 75 1-98 49-151 (200)
21 PRK01759 glnD PII uridylyl-tra 99.1 2.2E-10 4.8E-15 128.5 10.1 118 111-233 325-451 (854)
22 PRK05007 PII uridylyl-transfer 99.0 1.9E-09 4E-14 121.6 10.1 120 111-233 349-476 (884)
23 PRK04374 PII uridylyl-transfer 98.5 6.8E-07 1.5E-11 100.8 11.0 117 113-232 340-463 (869)
24 COG2844 GlnD UTP:GlnB (protein 97.0 0.014 3E-07 65.0 14.3 109 113-223 337-452 (867)
25 cd07749 NT_Pol-beta-like_1 Nuc 59.5 22 0.00047 32.6 5.5 44 4-49 35-89 (156)
26 PF13735 tRNA_NucTran2_2: tRNA 55.7 23 0.00049 31.1 5.0 110 244-365 9-123 (149)
27 PF12626 PolyA_pol_arg_C: Poly 33.0 62 0.0014 28.4 4.0 68 264-331 7-86 (124)
28 cd05402 NT_PAP_TUTase Nucleoti 31.4 1.4E+02 0.003 24.8 5.8 48 3-50 33-98 (114)
29 PRK11639 zinc uptake transcrip 22.5 3.1E+02 0.0068 25.0 6.9 72 127-200 5-79 (169)
No 1
>PRK11623 pcnB poly(A) polymerase I; Provisional
Probab=100.00 E-value=1.9e-59 Score=484.03 Aligned_cols=281 Identities=27% Similarity=0.494 Sum_probs=237.3
Q ss_pred CCCCCCCcEEEEeCCCHHHHHHHhccCcccccccceEEEEeCCEEEEEeccccccccccccc-------ccccc--CcCC
Q 014947 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSRDF-------KYEFE--RPIG 71 (415)
Q Consensus 1 LLg~~pkD~DIaT~a~peev~~~f~~~~~vG~~f~i~~v~~~g~~iEVstfR~~~~~~~~~~-------~~~~~--~p~g 71 (415)
|||++||||||+|+|+|+||+++|+++.++|++|+++||.+++..|||+|||++..+..+.. ++.+. ...|
T Consensus 80 LLG~~pkD~DIaT~A~peev~~lf~~~r~iGrrF~~~hV~~~~~~iEVaTfR~~~~~~~~~~~~~~~~~~g~~~rdn~~g 159 (472)
T PRK11623 80 LLGKKPKDFDVTTNATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGNESDRNTSQRGQNGMLLRDNIFG 159 (472)
T ss_pred HcCCCCCCEEEecCCCHHHHHHHhhhCeeecCCCCEEEEEECCceEEEeccccccccccccccccccCCCCceecccCCC
Confidence 69999999999999999999999999999999999999999999999999998754322111 11111 1257
Q ss_pred CchHhhhhhhhhccCCccccceeecCCCCeEecccCcHHHHccCceeecCCcccchhhchhhHHHHHHHHHHhCCCCCHH
Q 014947 72 CDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRE 151 (415)
Q Consensus 72 ~~eeDl~r~~da~RRDFTINAla~~~~~~~i~D~~gG~~DL~~~~iR~v~~p~~~f~eDPlRiLRa~RFaa~lgf~i~~~ 151 (415)
+++||+ .||||||||||||+.++.|+|||||++||++|+||+||+|..||+|||+|||||+|||++|||+|+++
T Consensus 160 tieeDl------~RRDFTINALayd~~~~~IiD~~gG~~DLk~riLR~IGdp~~rf~EDPlRmLRAvRFAArLgF~Ie~~ 233 (472)
T PRK11623 160 SIEEDA------QRRDFTINSLYYSVADFTVRDYVGGMKDLKEGVIRLIGNPETRYREDPVRMLRAVRFAAKLDMRISPE 233 (472)
T ss_pred CHHHHH------HhccccHHHheecCCCCeEecCCCCHHHHhCCceeecCChHhhcccchHHHHHHHHHHHHhCCCcCHH
Confidence 889999 69999999999999888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhhcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHcCCchhhchhhHHHHhhcCCccCchhHHHHHHHHHHHH
Q 014947 152 TAHFVKHLSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLD 231 (415)
Q Consensus 152 T~~~i~~~~~~l~~vs~eRi~~El~kll~~~~~~~~l~~l~~~gll~~l~P~~~~~~~~~~~~~~~~~~~~l~~~l~~ld 231 (415)
|.++|++++++|..+|+|||++|+.|||.++++..++++|.++|++..+||++..++.... ....+.++..++.++|
T Consensus 234 T~~aI~~~a~lL~~vs~eRI~~El~KlL~~~~~~~~~~lL~e~GLl~~lfPel~~~~~~~~---~~~~~~~~~~~l~~tD 310 (472)
T PRK11623 234 TAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCEYHLFQPLFPTITRYFTENG---DSPMERIIEQVLKNTD 310 (472)
T ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHcCCCHHHHHHHHHHcCCHHHHhHhHHHHhcccc---ccHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998764322 1124567889999999
Q ss_pred hhhCCCCCCCcc------hHHHHHHHHHHHhcCCCChhHHHHHHHHHhcc-hhHHHHHHHhhhhhcc
Q 014947 232 KLLAPDRPCHSS------LWIAILAFHKALSDQPRDPLVVAVFSLAVYNG-GDMLEAVKIARRINKS 291 (415)
Q Consensus 232 ~~~~~~~~~~~~------~W~~~l~~~~~l~~~~~~~~~~~a~~la~~~~-~~~~~~v~~~~r~~~~ 291 (415)
+++..+++++|. +|+.+....+.+..+.+.+ ...++..|+... ..+.+.++||||++.+
T Consensus 311 ~ri~~~~~v~p~fl~a~llw~~~~~~~~~~~~~~~~~-~~~a~~~a~~~~l~~~~~~~~ip~r~~~~ 376 (472)
T PRK11623 311 TRIHNDMRVNPAFLFAAMFWYPLLEHAQKIAQESGLA-YYDAFALAMNDVLDEACRSLAIPKRLTTL 376 (472)
T ss_pred HHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCC-hHHHHHHHHHHHHHHHhhheeCchhhHHH
Confidence 999999999885 5666655544443333344 357888888765 5566666666666654
No 2
>TIGR01942 pcnB poly(A) polymerase. This model describes the pcnB family of poly(A) polymerases (also known as plasmid copy number protein). These enzymes sequentially add adenosine nucleotides to the 3' end of RNAs, targeting them for degradation by the cell. This was originally described for anti-sense RNAs, but was later demonstrated for mRNAs as well. Members of this family are as yet limited to the gamma- and beta-proteobacteria, with putative members in the Chlamydiacae and spirochetes. This family has homology to tRNA nucleotidyltransferase (cca).
Probab=100.00 E-value=2.5e-57 Score=462.79 Aligned_cols=280 Identities=29% Similarity=0.473 Sum_probs=233.0
Q ss_pred CCCCCCCcEEEEeCCCHHHHHHHhccCcccccccceEEEEeCCEEEEEeccccccccccccccccccC--cCCCchHhhh
Q 014947 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSRDFKYEFER--PIGCDEKDFI 78 (415)
Q Consensus 1 LLg~~pkD~DIaT~a~peev~~~f~~~~~vG~~f~i~~v~~~g~~iEVstfR~~~~~~~~~~~~~~~~--p~g~~eeDl~ 78 (415)
|||++||||||+|+|+|++|+++|+++.++|++|+++||.+++..|||+|||++..... ...+.... ..|++++|+
T Consensus 43 LLG~~pkD~DIat~a~peei~~lf~~~~~iG~rf~~~~v~~~~~~iEvatfR~~~~~~~-~~~g~~~~d~~~gtieeDl- 120 (410)
T TIGR01942 43 LLGIEPKDFDVVTSATPEEVRKLFRNSRIVGRRFRLVHVSFGRQIIEVATFRSGHKSSV-NAEGRILKDNVYGTLEEDA- 120 (410)
T ss_pred HcCCCCCCEEEEcCCCHHHHHHHhhhCeecCCCCCEEEEEECCEEEEEecccccccCCC-CCCCCcccccccCCHHHHh-
Confidence 68999999999999999999999999999999999999999999999999998642111 11111111 247889999
Q ss_pred hhhhhccCCccccceeecCCCCeEecccCcHHHHccCceeecCCcccchhhchhhHHHHHHHHHHhCCCCCHHHHHHHhh
Q 014947 79 RWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKH 158 (415)
Q Consensus 79 r~~da~RRDFTINAla~~~~~~~i~D~~gG~~DL~~~~iR~v~~p~~~f~eDPlRiLRa~RFaa~lgf~i~~~T~~~i~~ 158 (415)
.||||||||||||+.++.|+||+||++||++|+||+||+|.++|+|||+|||||+|||++|||.|+++|.++|++
T Consensus 121 -----~RRDFTINALayd~~~~~IiD~~gG~~DL~~~~LR~igdp~~rf~EDPlRiLRAvRFaa~LgF~Ie~~T~~~I~~ 195 (410)
T TIGR01942 121 -----WRRDFTVNALYYDPSREVIIDYVGGMEDLKNRRLRLIGDPRSRYQEDPVRMLRALRFSVKLEFTIDESTARPIRE 195 (410)
T ss_pred -----hcCCchhhheeecCCCCeeeCCCCcHHHHHCCceeecCChhhcccccHHHHHHHHHHHHHhCCCcCHHHHHHHHH
Confidence 699999999999999888999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHcCCchhhchhhHHHHhhcCCccCchhHHHHHHHHHH-HHhhhCCC
Q 014947 159 LSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSN-LDKLLAPD 237 (415)
Q Consensus 159 ~~~~l~~vs~eRi~~El~kll~~~~~~~~l~~l~~~gll~~l~P~~~~~~~~~~~~~~~~~~~~l~~~l~~-ld~~~~~~ 237 (415)
++++|.++|+|||++|+.|+|.++++..++++|.++|++..+||+++..+.... .....++...+.+ +|.++..+
T Consensus 196 ~a~~L~~vs~eRI~~El~Kll~~~~~~~~l~~L~~~gll~~lfPel~~~l~~~~----~~~~~~~~~~l~~~~d~r~~~~ 271 (410)
T TIGR01942 196 SAPLLKGIPPARLFEEILKLLFSGRSAALFRMLCGYQLLEPLFPSVAYALRESP----KFESAFTVQALVNDTDFRVKRD 271 (410)
T ss_pred HHHHHhcCCHHHHHHHHHHHHcCCCHHHHHHHHHHcCCHHHHhHhHHHHHhcCC----chHHHHHHHHHHhhhHHHHhCC
Confidence 999999999999999999999999999999999999999999999987654321 1134566777888 99999999
Q ss_pred CCCCcch------HHHHHHHHHHHhcCCCChhHHHHHHHHHhcc-hhHHHHHHHhhhhhcccc
Q 014947 238 RPCHSSL------WIAILAFHKALSDQPRDPLVVAVFSLAVYNG-GDMLEAVKIARRINKSHD 293 (415)
Q Consensus 238 ~~~~~~~------W~~~l~~~~~l~~~~~~~~~~~a~~la~~~~-~~~~~~v~~~~r~~~~~~ 293 (415)
++++|.. |..+.........++ .+ ...++..|+... ..+.+.++||||++.+..
T Consensus 272 ~~v~p~fl~a~ll~~~~~~~~~~~~~~~-~~-~~~a~~~a~~~~l~~~~~~~~ip~r~~~~~r 332 (410)
T TIGR01942 272 KPVTPAFLYAALLWPGLVFRVADAPDQG-VM-PYPAVFDAIRDFVEEQCAPISIPKRFSIPTR 332 (410)
T ss_pred CCCCHHHHHHHHhHHHHHHHHHHHHhCC-CC-hHHHHHHHHHHHHHHHhhhccCchhhhHHHH
Confidence 9999864 444443333333332 23 357888888776 557777777777665543
No 3
>KOG2159 consensus tRNA nucleotidyltransferase/poly(A) polymerase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.1e-52 Score=421.19 Aligned_cols=351 Identities=43% Similarity=0.622 Sum_probs=290.3
Q ss_pred CCCCCCCcEEEEeCCCHHHHHHHhccCcc-cccccceEEEEeCCEE---EEEecccccc-----cccc-ccccccccCcC
Q 014947 1 MLNRIPKDFDIITSAELKEVVRVFSQCEI-VGKRFPICHVHFENTI---VEVSSFSTSG-----RRFS-RDFKYEFERPI 70 (415)
Q Consensus 1 LLg~~pkD~DIaT~a~peev~~~f~~~~~-vG~~f~i~~v~~~g~~---iEVstfR~~~-----~~~~-~~~~~~~~~p~ 70 (415)
|||++|+|+||||+|.+.|+++.|.++.+ +|+.++++||..|... .|.+|||-.+ ...+ +.|. +...|
T Consensus 42 LLg~~p~DiDiatta~~g~~~e~f~~~~~~~~~~~~~~h~~~np~~skhletat~~i~~~~iD~v~lr~~~y~-e~~~~- 119 (416)
T KOG2159|consen 42 LLGREPKDIDIATTAMSGQMKEMFQSAQIRVGKKFPICHVIMGPIKSKHLETATFRITTLRIDFVNLRREAYT-ETSIP- 119 (416)
T ss_pred HcCCCCcccceeeccccHHHHHHHHHHHHhhcccCCcceeecCCcceeeecceeeeeeccccceeecCccccc-ccCCC-
Confidence 69999999999999999999999998876 9999999998765433 3333443211 1100 0010 11111
Q ss_pred CCchHhhhhhhhhccCCccccceeecCCCCeEecccCcHHHHccCceeecCCcccchhhchhhHHHHHHHHHHhCCCC--
Q 014947 71 GCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRF-- 148 (415)
Q Consensus 71 g~~eeDl~r~~da~RRDFTINAla~~~~~~~i~D~~gG~~DL~~~~iR~v~~p~~~f~eDPlRiLRa~RFaa~lgf~i-- 148 (415)
...|-.+|+||.|||||||+++||++++.|+||+||++||++++||++++|.++|.|||+||||++|||+|+||+|
T Consensus 120 --~~~dgt~~~nalRRD~TIN~Lffn~~~~~VeDytgG~eDL~~~kvrt~~~A~~tf~eDpLRILR~iRFaaRlgftid~ 197 (416)
T KOG2159|consen 120 --YVTDGTRDENALRRDFTINSLFFNPFDGTVEDYTGGLEDLKNKKVRTVLHAKQTFLEDPLRILRGIRFAARLGFTIDE 197 (416)
T ss_pred --CCCcCcchhhhhhhccchhhhhccCCCCceeeccccHhHHhcCeEEeeccccceeccchHHHHHHHHHHHhhcCccCc
Confidence 2445556777799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -CHHHHHHHhhhhhhhcCCCHHHHHHHHHHHHhCCCHHHHHHHHHH-cCCchhhchhhHHHHhhcCCccCchhHHHHHHH
Q 014947 149 -SRETAHFVKHLSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWK-FGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSL 226 (415)
Q Consensus 149 -~~~T~~~i~~~~~~l~~vs~eRi~~El~kll~~~~~~~~l~~l~~-~gll~~l~P~~~~~~~~~~~~~~~~~~~~l~~~ 226 (415)
+.+|..+++.++.+++++|+|||+.|+.|||.++++..++++|++ .|+...++|..+.+..-+++...+..++..+..
T Consensus 198 ~~~e~~~~~k~~~~~~~kIS~ERI~~Ei~kmL~g~~~~~~L~ll~~~~~~~~i~lp~~~s~~~f~~~~~~~~~s~~~~sl 277 (416)
T KOG2159|consen 198 ESKETLEAIKENVALLAKISRERIGVEINKMLVGNSAEASLRLLWRLFGFEYIFLPIEASLEEFQGFNRRDGFSNEPLSL 277 (416)
T ss_pred ccHHHHhhHHHHHHHhccccHHHHHHHHHHHHcCCcHHHHHHHHHHhcCceEEeccchhhhhhccccccccccchhHHHH
Confidence 778888899999999999999999999999999999999999999 888888899988876666654456666777788
Q ss_pred HHHHHhhhCCCCCCCcchHHHHHHHHHHHhcCCCChhHHHHHHHHHhcchhHHHHHHHhhhhhccccchhhhhcCCCC--
Q 014947 227 FSNLDKLLAPDRPCHSSLWIAILAFHKALSDQPRDPLVVAVFSLAVYNGGDMLEAVKIARRINKSHDESFCELLEPRD-- 304 (415)
Q Consensus 227 l~~ld~~~~~~~~~~~~~W~~~l~~~~~l~~~~~~~~~~~a~~la~~~~~~~~~~v~~~~r~~~~~~~~~~~l~~~~~-- 304 (415)
+.++++...++.+++..+|+..+.+|.++..+++.+.+.+.++.+++.. .+.+.+++.+.+.+...+..+..+..
T Consensus 278 ~~~l~~~~~~~~~~~~~l~l~~~~~~~~~~~~~r~~~v~~~~~~~~~~~---~~~~~i~~~i~~~~~~~~~~l~~~~~~~ 354 (416)
T KOG2159|consen 278 LANLDKSLAPDEPCHLRLKLSILELLKKFIDQPRFPTVPAVSSSAPLSK---LQDVEIPKKIEKDHDRLRQLLVSQEKNE 354 (416)
T ss_pred HhcccccccccchhhhhHHHHHHhhhhHhhccccccceeeeecccchhh---hhhhhcccccccchHHHHHHhcchHhhh
Confidence 9999999999999999999999999999999998888778888877764 78899999999998887777765543
Q ss_pred CcHHHH-HHHHHHHHHHHHHHhcccCcHHHHHHHhccCCCCCCCceEEeehhhhh
Q 014947 305 LDFEAL-KHEVMDFAESSKGALSKMTDEYFVSQAMAGYSRAPFSDLVFIPLALYL 358 (415)
Q Consensus 305 ~~~~~~-~~~~~~~a~~v~~a~~~~~~~~~~~~~~~~~~~~~~s~l~~~~~~~~~ 358 (415)
.+.+.+ -..+-...+.+++++.+.++......+|.+|++++.+|.++.+++..+
T Consensus 355 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~llr~l~~~w~~~~~~~~~~~~ 409 (416)
T KOG2159|consen 355 LDNETLLDWSVPDFPISINDLAIEGTSKGSIIGALLRYLQAPWSDSVFTSLKDSL 409 (416)
T ss_pred hHHHHHhhhccCchHHHHHHHHHhhcccchhHHHHHHhhhhhHHHHHhHHHHHHH
Confidence 112222 122456788999999999998888999999999999999998877665
No 4
>COG0617 PcnB tRNA nucleotidyltransferase/poly(A) polymerase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-49 Score=410.17 Aligned_cols=198 Identities=37% Similarity=0.568 Sum_probs=183.5
Q ss_pred CCCCCCCcEEEEeCCCHHHHHHHhccCcccccccceEEEEeCCEEEEEeccccccc-cccccccccccCcCCCchHhhhh
Q 014947 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGR-RFSRDFKYEFERPIGCDEKDFIR 79 (415)
Q Consensus 1 LLg~~pkD~DIaT~a~peev~~~f~~~~~vG~~f~i~~v~~~g~~iEVstfR~~~~-~~~~~~~~~~~~p~g~~eeDl~r 79 (415)
|||++|+|+||||++.|++++++|+++..+|++||+++|..+|..+||+|||++++ +.+... ...+.+++++|+
T Consensus 36 LLG~~~~D~Diat~~~p~~~~~~~~~~~~~G~~f~t~~v~~~~~~~ev~T~R~~~~~~~~~~~---~~~~~~tleeDl-- 110 (412)
T COG0617 36 LLGRPPKDVDIATNATPEEVKKLFRNTRPVGRKFGTVTVPFNGEIIEVTTFRKEGYGYNGRPL---PVVFPGTLEEDL-- 110 (412)
T ss_pred HcCCCCcceeeeCCCCCHHHHHHHhhhhhhhhhcCeEEeccCCEEEEEEEeecCCCCcCCCcC---CcCCCCCHHHHH--
Confidence 69999999999999999999999998899999999999999889999999999864 221111 122467889999
Q ss_pred hhhhccCCccccceeecCCCCeEecccCcHHHHccCceeecCCcccchhhchhhHHHHHHHHHHhCCCCCHHHHHHHhhh
Q 014947 80 WRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHL 159 (415)
Q Consensus 80 ~~da~RRDFTINAla~~~~~~~i~D~~gG~~DL~~~~iR~v~~p~~~f~eDPlRiLRa~RFaa~lgf~i~~~T~~~i~~~ 159 (415)
.|||||||||||++..++|+||+||+.||++|+||+||+|++||.|||+|||||+|||++|||.++++|..+|+..
T Consensus 111 ----~RRDFTINAla~~~~~~~iiD~~gG~~DL~~~~lR~i~~~~~rf~EDplRiLRa~RFaa~l~f~i~~~t~~~i~~~ 186 (412)
T COG0617 111 ----KRRDFTINALAYDPEDGEIIDPFGGLKDLENRVLRHIGDASERFREDPLRILRAARFAARLGFTIEPETEEAIRLM 186 (412)
T ss_pred ----HHhcccHHhhccCCCCCeEEeCCCCHHHHhcCceeccCCHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHH
Confidence 6999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHcCCchhhchhhHHH
Q 014947 160 SPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAY 207 (415)
Q Consensus 160 ~~~l~~vs~eRi~~El~kll~~~~~~~~l~~l~~~gll~~l~P~~~~~ 207 (415)
...+..+|+|||+.|+.|||.++++..+++.|.++|++..+||++..+
T Consensus 187 ~~~~~~is~ERi~~El~KlL~~~~~~~~l~~l~~~g~l~~l~p~~~~~ 234 (412)
T COG0617 187 APLLAKISRERLWDELKKLLLSPNPREALQLLREYGALKILFPELDKL 234 (412)
T ss_pred HHHhhcCCHHHHHHHHHHHHcCCCHHHHHHHHHHcCChhhcChhHHHh
Confidence 999999999999999999999999999999999999999999998753
No 5
>PRK13299 tRNA CCA-pyrophosphorylase; Provisional
Probab=100.00 E-value=2.3e-48 Score=398.36 Aligned_cols=196 Identities=32% Similarity=0.408 Sum_probs=176.7
Q ss_pred CCCCCCCcEEEEeCCCHHHHHHHhccCcccccccceEEEEeCCEEEEEeccccccccccccccccccCcCCCchHhhhhh
Q 014947 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSRDFKYEFERPIGCDEKDFIRW 80 (415)
Q Consensus 1 LLg~~pkD~DIaT~a~peev~~~f~~~~~vG~~f~i~~v~~~g~~iEVstfR~~~~~~~~~~~~~~~~p~g~~eeDl~r~ 80 (415)
|||++|+|+||+|++.|+++++.|+++..+|.+||++.|..+|..+||+|||+++.+..+...... ...+++++||
T Consensus 34 LLg~~~~DiDi~~~~~~~~~~~~~~~~~~~g~~~gt~~v~~~~~~~ei~t~R~e~~~~d~~~p~~~-~~~~~i~eDl--- 109 (394)
T PRK13299 34 LLGRPIHDVDIATSAYPEEVKAIFPRTVDVGIEHGTVLVLENGEEYEVTTFRTESEYVDYRRPSEV-TFVRSLEEDL--- 109 (394)
T ss_pred HcCCCCCCEEEecCCCHHHHHHHhhhhhhccccCCEEEEEECCEEEEEEeeccccCccCCCCCccc-cCCCCHHHHH---
Confidence 689999999999999999999999988789999999999999999999999997544322111111 1124779999
Q ss_pred hhhccCCccccceeecCCCCeEecccCcHHHHccCceeecCCcccchhhchhhHHHHHHHHHHhCCCCCHHHHHHHhhhh
Q 014947 81 RNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLS 160 (415)
Q Consensus 81 ~da~RRDFTINAla~~~~~~~i~D~~gG~~DL~~~~iR~v~~p~~~f~eDPlRiLRa~RFaa~lgf~i~~~T~~~i~~~~ 160 (415)
.|||||||||||++.+ .|+|||||++||++|+||+||+|+++|.|||+|||||+|||++|||+|+++|+++|++++
T Consensus 110 ---~RRDFTINAma~~~~g-~liDpf~G~~DL~~~~iR~v~~~~~~f~eDplRiLRa~Rfaa~l~f~i~~~t~~~i~~~~ 185 (394)
T PRK13299 110 ---KRRDFTINAIAMDENG-EIIDLFDGLEDLKNRLIRAVGNAEERFQEDALRMMRAVRFASQLGFDLETETFEAMKTQA 185 (394)
T ss_pred ---HhccccHHHhhcCCCC-CEeeCCCCHHHHhCCceeecCCHHHhhccCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 6999999999999975 478999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHcCCchhhchhhH
Q 014947 161 PSILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQA 205 (415)
Q Consensus 161 ~~l~~vs~eRi~~El~kll~~~~~~~~l~~l~~~gll~~l~P~~~ 205 (415)
+.+..+|+|||+.|+.|+|.++++..+++.|.++|++.. +|++.
T Consensus 186 ~~l~~vs~eRI~~El~kll~~~~~~~~l~~l~~~gll~~-~p~l~ 229 (394)
T PRK13299 186 PLLEKISVERIFVEFEKLLLGPFWRKGLKLLIETGLYNY-LPGLK 229 (394)
T ss_pred HHHhcCCHHHHHHHHHHHHcCCCHHHHHHHHHHCChHHh-Ccccc
Confidence 999999999999999999999999999999999999998 89865
No 6
>TIGR02692 tRNA_CCA_actino tRNA adenylyltransferase. The enzyme tRNA adenylyltransferase, also called tRNA-nucleotidyltransferase and CCA-adding enzyme, can add or repair the required CCA triplet at the 3'-end of tRNA molecules. Genes encoding tRNA include the CCA tail in some but not all bacteria, and this enzyme may be required for viability. Members of this family represent a distinct clade within the larger family pfam01743 (tRNA nucleotidyltransferase/poly(A) polymerase family protein). The example from Streptomyces coelicolor was shown to act as a CCA-adding enzyme and not as a poly(A) polymerase.
Probab=100.00 E-value=3.3e-46 Score=390.15 Aligned_cols=222 Identities=21% Similarity=0.312 Sum_probs=188.1
Q ss_pred CCCCCCCcEEEEeCCCHHHHHHHhcc----CcccccccceEEEEeCCEEEEEeccccccccccccccccccCcCCCchHh
Q 014947 1 MLNRIPKDFDIITSAELKEVVRVFSQ----CEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSRDFKYEFERPIGCDEKD 76 (415)
Q Consensus 1 LLg~~pkD~DIaT~a~peev~~~f~~----~~~vG~~f~i~~v~~~g~~iEVstfR~~~~~~~~~~~~~~~~p~g~~eeD 76 (415)
|||++|+|+||+|+|.|+++.++|+. +..+|+.||++.|..+|..+||+|||++.++..+..+ .....+++++|
T Consensus 41 llg~~~~D~Di~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~v~~~~~~~ei~~~r~e~~~~~~~~~--~v~~~~~i~~D 118 (466)
T TIGR02692 41 LLGRLGHDLDFTTDARPEETLAILRPWADAVWDTGIAFGTVGAEKDGQQIEITTFRSDSYDGTSRKP--EVTFGDTLEGD 118 (466)
T ss_pred HcCCCCCCEEEEeCCCHHHHHHHHHHhhhhccccCcccceEEEEECCcEEEEEecccccCcCCCCCC--cccCCCCHHHH
Confidence 68999999999999999999999973 4578999999999999999999999988654322111 00112467999
Q ss_pred hhhhhhhccCCccccceeecCCCC---eEecccCcHHHHccCceeecCCcccchhhchhhHHHHHHHHHHhCCCCCHHHH
Q 014947 77 FIRWRNCLQRDFTINGLMFDPYAK---IIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETA 153 (415)
Q Consensus 77 l~r~~da~RRDFTINAla~~~~~~---~i~D~~gG~~DL~~~~iR~v~~p~~~f~eDPlRiLRa~RFaa~lgf~i~~~T~ 153 (415)
| .|||||||||||++.++ .|+|||||++||++|+||+|++|..+|.|||+|||||+|||+++||+|+++|.
T Consensus 119 l------~rRDFTiNA~a~~~~~~~~g~l~D~~~G~~Dl~~~~ir~v~~~~~~f~eDPlRiLRa~Rfaa~lgf~i~~~T~ 192 (466)
T TIGR02692 119 L------IRRDFTVNAMAVRIPADGSLEFHDPVGGLDDLLAKVLDTPATPEQSFGDDPLRMLRAARFVSQLGFEVAPRVR 192 (466)
T ss_pred H------HhccccHHHhhccccCCCCceeecCCCcHHHHhCCceEecCChHHhhhhChHHHHHHHHHHHHhCCCcCHHHH
Confidence 9 69999999999998754 79999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhhcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHcCCchhhchhhHHHHh-hcCCccCchhHHHHHHHHHHHHh
Q 014947 154 HFVKHLSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLV-KHGFRRRDKRSNLLLSLFSNLDK 232 (415)
Q Consensus 154 ~~i~~~~~~l~~vs~eRi~~El~kll~~~~~~~~l~~l~~~gll~~l~P~~~~~~~-~~~~~~~~~~~~~l~~~l~~ld~ 232 (415)
.+|+++++.+..+|+|||+.|+.|+|.++++..+++.|.++|++..+||++..... +...+|. .+...|++..+++
T Consensus 193 ~~i~~~~~~l~~i~~eRi~~E~~kil~~~~~~~~l~~l~~~glL~~~~Pe~~~~~~~~~~~~h~---~~v~~Htl~vl~~ 269 (466)
T TIGR02692 193 AAMTEMADQIERISAERVRVELDKLLLGDHPRAGIDLMVETGLADRVLPEIPALRLEIDEHHQH---KDVYEHSLTVLRQ 269 (466)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHcCCCcHHHHHHHHhhhhhhhcCchHHHHhcccccCCCC---CcHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999986542 2222222 1334455555554
Q ss_pred h
Q 014947 233 L 233 (415)
Q Consensus 233 ~ 233 (415)
.
T Consensus 270 ~ 270 (466)
T TIGR02692 270 A 270 (466)
T ss_pred H
Confidence 4
No 7
>PRK13298 tRNA CCA-pyrophosphorylase; Provisional
Probab=100.00 E-value=8.1e-44 Score=364.59 Aligned_cols=220 Identities=26% Similarity=0.291 Sum_probs=175.3
Q ss_pred CCCCCCCcEEEEeCC-CHHHHHHHhccCcccccccceEEEEeCCEEEEEecccccccccccccccccc-CcCCCchHhhh
Q 014947 1 MLNRIPKDFDIITSA-ELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSRDFKYEFE-RPIGCDEKDFI 78 (415)
Q Consensus 1 LLg~~pkD~DIaT~a-~peev~~~f~~~~~vG~~f~i~~v~~~g~~iEVstfR~~~~~~~~~~~~~~~-~p~g~~eeDl~ 78 (415)
|||++|+|+|++|++ +|+++.+. +...+|+.||++.+ .+...|++++|++.+...+....... .|..+++|||
T Consensus 14 LLg~~~~D~D~vv~g~~~~~~~~~--~~~~vG~~f~v~l~--~~~~~e~a~aRter~~g~g~~g~~~~~~~~~tleeDL- 88 (417)
T PRK13298 14 LLNLPVKDKDWVVVGGTPKILLSI--NFQQVGKDFPVFLH--PETHEEYALARTERKSGVGYTGFITDTSSDVTLEEDL- 88 (417)
T ss_pred HcCCCCCCeeEEecCCCHHHHHHH--HHHHhCCeeEEEEe--CceeEEEEeecccccccCCCCCcccccCCCCCHHHHH-
Confidence 689999999998765 68887653 23348999998775 34567999999986543321111222 2456889999
Q ss_pred hhhhhccCCccccceeecCCCCeEecccCcHHHHccCceeecCCcccchhhchhhHHHHHHHHHHh---CCCCCHHHHHH
Q 014947 79 RWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARL---GFRFSRETAHF 155 (415)
Q Consensus 79 r~~da~RRDFTINAla~~~~~~~i~D~~gG~~DL~~~~iR~v~~p~~~f~eDPlRiLRa~RFaa~l---gf~i~~~T~~~ 155 (415)
.||||||||||||+.++ |+|||||++||++|+||+|++ +|.|||+|||||+|||++| ||+|+++|.++
T Consensus 89 -----~RRDFTINAmA~~~~g~-liDp~~G~~DL~~r~lR~v~~---~F~EDPLRiLRa~RFaar~~~lgF~i~~~T~~~ 159 (417)
T PRK13298 89 -----IRRDLTINAIAQDENGN-YIDPFQGKKDIQLRLLRHVSE---SFIEDPLRVLRVARFAALLVHLGFKIAKETMIL 159 (417)
T ss_pred -----HhcccceeeeEECCCCC-EEeCCCcHHHHHCCcEecCCc---ccccCHHHHHHHHHHHHHhccCCCccCHHHHHH
Confidence 69999999999998765 779999999999999999975 7999999999999999995 99999999999
Q ss_pred Hhhhh--hhhcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHcCCchhhchhhHHHHhhcCCcc-CchhHHHHHHHHHHHHh
Q 014947 156 VKHLS--PSILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRR-RDKRSNLLLSLFSNLDK 232 (415)
Q Consensus 156 i~~~~--~~l~~vs~eRi~~El~kll~~~~~~~~l~~l~~~gll~~l~P~~~~~~~~~~~~~-~~~~~~~l~~~l~~ld~ 232 (415)
|++++ ..|..+|+|||+.|+.|+|.+++|..+++.|.++|+|..+||++..+...++... .-...+...|++..++.
T Consensus 160 i~~~~~~~~l~~~s~ERI~~El~k~L~~~~p~~~~~~L~~~g~L~~~~PEl~~~~g~~q~~~~~~~~~d~~~htl~~l~~ 239 (417)
T PRK13298 160 MCIMVKKHELLYLTPERIWNETEKALKTDNPHVYFQVLYECNALKFLFPEIDFLYEKPYFLNSFFKKFNLGNYILMGLSK 239 (417)
T ss_pred HHHHhhhhhhhcCCHHHHHHHHHHHHcCCCHHHHHHHHHHcCCHHHhCcchHHHcCCCCCccccCCchhHHHHHHHHHHH
Confidence 99998 7899999999999999999999999999999999999999999987754332110 00112344555555554
Q ss_pred hh
Q 014947 233 LL 234 (415)
Q Consensus 233 ~~ 234 (415)
..
T Consensus 240 ~~ 241 (417)
T PRK13298 240 IS 241 (417)
T ss_pred HH
Confidence 43
No 8
>PRK10885 cca multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase; Reviewed
Probab=100.00 E-value=4.5e-43 Score=360.83 Aligned_cols=195 Identities=29% Similarity=0.368 Sum_probs=168.1
Q ss_pred CCCCCCCcEEEEe-CCCHHHHHHHhccCcccccccceEEEEeCCEEEEEeccccccccccccccccc-cCcCCCchHhhh
Q 014947 1 MLNRIPKDFDIIT-SAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSRDFKYEF-ERPIGCDEKDFI 78 (415)
Q Consensus 1 LLg~~pkD~DIaT-~a~peev~~~f~~~~~vG~~f~i~~v~~~g~~iEVstfR~~~~~~~~~~~~~~-~~p~g~~eeDl~ 78 (415)
|||++|+|+||+| .++|+++.+. +...+|+.||++.+. +..+|++++|++.+...+.....+ ..|..+++|||
T Consensus 14 Llg~~~~D~D~vv~~~~~~~~~~~--~~~~~g~~f~v~~~~--~~~~e~~~~r~er~~~~g~~~~~~~~~~~~~l~eDl- 88 (409)
T PRK10885 14 LLGLPVKDRDWVVVGATPEEMLAQ--GYQQVGKDFPVFLHP--KTHEEYALARTERKSGRGYTGFTCYAAPDVTLEEDL- 88 (409)
T ss_pred HcCCCCCCeeEEeeCChHHHHHhC--CCeecCceeEEEEeC--CceEEEEeeeeccccCCCCCCceeccCCCCCHHHHH-
Confidence 6899999999865 5799998765 445689999987543 456799999998654332222222 24567889999
Q ss_pred hhhhhccCCccccceeecCCCCeEecccCcHHHHccCceeecCCcccchhhchhhHHHHHHHHHHh---CCCCCHHHHHH
Q 014947 79 RWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARL---GFRFSRETAHF 155 (415)
Q Consensus 79 r~~da~RRDFTINAla~~~~~~~i~D~~gG~~DL~~~~iR~v~~p~~~f~eDPlRiLRa~RFaa~l---gf~i~~~T~~~ 155 (415)
.|||||||||||+..+ .|+|||||++||++|+||+|++ +|.|||+|||||+|||++| ||+|+++|..+
T Consensus 89 -----~RRDfTiNA~a~~~~~-~liDp~~G~~Dl~~~~lr~v~~---~f~eDPlRiLRa~RFaarl~~lgf~i~~~T~~~ 159 (409)
T PRK10885 89 -----IRRDLTINAMAQDDDG-ELIDPYGGQRDLEARLLRHVSP---AFAEDPLRVLRVARFAARFAHLGFRIAPETLAL 159 (409)
T ss_pred -----HhccchhhhheeCCCC-CEecCCCCHHHHhCCceEeCCc---hhhhCHHHHHHHHHHHHHhccCCCCcCHHHHHH
Confidence 6999999999999654 5889999999999999999987 5999999999999999999 99999999999
Q ss_pred Hhhhhh--hhcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHcCCchhhchhhHHHHh
Q 014947 156 VKHLSP--SILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLV 209 (415)
Q Consensus 156 i~~~~~--~l~~vs~eRi~~El~kll~~~~~~~~l~~l~~~gll~~l~P~~~~~~~ 209 (415)
|++++. .|..+++|||+.|+.|+|.+++|..+++.|.++|+|..+||++..+..
T Consensus 160 i~~~~~~~~L~~~~~ERi~~El~kiL~~~~p~~~l~~L~~~g~L~~l~PEl~~l~~ 215 (409)
T PRK10885 160 MREMVASGELDALTPERVWKETERALMERNPQVFFQVLRDCGALAVLLPEIDALFG 215 (409)
T ss_pred HHHhhhhchhhhCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhHHHHHhhHHHHHhc
Confidence 999887 899999999999999999999999999999999999999999998754
No 9
>PRK13297 tRNA CCA-pyrophosphorylase; Provisional
Probab=100.00 E-value=6.9e-43 Score=351.41 Aligned_cols=192 Identities=26% Similarity=0.307 Sum_probs=164.4
Q ss_pred CCCCCCCcEEEEe-CCCHHHHHHHhccCcccccccceEEEEeCCEEEEEeccccccccccccccc-cc-cCcCCCchHhh
Q 014947 1 MLNRIPKDFDIIT-SAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSRDFKY-EF-ERPIGCDEKDF 77 (415)
Q Consensus 1 LLg~~pkD~DIaT-~a~peev~~~f~~~~~vG~~f~i~~v~~~g~~iEVstfR~~~~~~~~~~~~-~~-~~p~g~~eeDl 77 (415)
|||++|+|+|+++ .++|+++.+. ....+|+.|+++.. .+..+|++++|++.+...+ +.. .. ..+..++++||
T Consensus 25 LLg~~~~D~D~vv~ga~pe~l~~~--~~~~vG~~f~v~l~--~~~~~e~a~aRterk~g~g-~~~f~~~~~~~~tLeeDL 99 (364)
T PRK13297 25 LLGLPAGDRDWVVVGATPEDMARR--GFIPVGGDFPVFLH--PRTKEEYALARTERKSGRG-YKGFTFYTGADVTLEQDL 99 (364)
T ss_pred HcCCCCCCeeeeccCChHHHHHhc--CceeeCCEEEEEEe--CCceEEEEEEEEeeccCCC-CceeEEeCCCCCCHHHHH
Confidence 6899999999865 5789999885 45678999986542 3556799999998644332 321 11 22346789999
Q ss_pred hhhhhhccCCccccceeecCCCCeEecccCcHHHHccCceeecCCcccchhhchhhHHHHHHHHHHhC-CCCCHHHHHHH
Q 014947 78 IRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLG-FRFSRETAHFV 156 (415)
Q Consensus 78 ~r~~da~RRDFTINAla~~~~~~~i~D~~gG~~DL~~~~iR~v~~p~~~f~eDPlRiLRa~RFaa~lg-f~i~~~T~~~i 156 (415)
.|||||||||||++.+ .|+|||||++||++|+||+|++ +|.|||+|||||+|||++|| |+|+++|.++|
T Consensus 100 ------~RRDFTINAmA~~~~g-~liDpfgG~~DL~~riLR~v~~---~F~EDPLRILRa~RFaarlg~F~i~~eT~~~~ 169 (364)
T PRK13297 100 ------QRRDLTVNAIARTPQG-ELVDPLDGVADVRARVLRHVGE---AFAEDPVRILRLGRFAARFGDFSIAPETMQLC 169 (364)
T ss_pred ------HhccceeeeeEECCCC-CEEECCCCHHHHhCCCeeeCcc---ccccCHHHHHHHHHHHHHhCCCCCCHHHHHHH
Confidence 6999999999999865 5889999999999999999985 79999999999999999996 99999999999
Q ss_pred hhhhh--hhcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHcCCchhhchhhHHH
Q 014947 157 KHLSP--SILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAY 207 (415)
Q Consensus 157 ~~~~~--~l~~vs~eRi~~El~kll~~~~~~~~l~~l~~~gll~~l~P~~~~~ 207 (415)
++++. .|..+|+|||+.|+.|+|.+++|..+++.|.++|+|..+||++..+
T Consensus 170 ~~~~~~~~l~~l~~ERI~~El~k~L~~~~p~~~l~~L~~~g~L~~l~Pel~~~ 222 (364)
T PRK13297 170 RRMVEAGEADALVPERVWKEVSRGLMAQAPSRMLDVLARAGALARVMPELHDD 222 (364)
T ss_pred HHHhhhcccccCCHHHHHHHHHHHHcCCCHHHHHHHHHHcCCHHHhCcccccc
Confidence 99885 6899999999999999999999999999999999999999998754
No 10
>PRK13296 tRNA CCA-pyrophosphorylase; Provisional
Probab=100.00 E-value=2.3e-40 Score=330.97 Aligned_cols=191 Identities=24% Similarity=0.333 Sum_probs=156.9
Q ss_pred CCCCCCCcEEEEeCCC-HHHHHH-HhccCcccccccceEEEEeCCEEEEEecccccccccccccccccc-CcCCCchHhh
Q 014947 1 MLNRIPKDFDIITSAE-LKEVVR-VFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSRDFKYEFE-RPIGCDEKDF 77 (415)
Q Consensus 1 LLg~~pkD~DIaT~a~-peev~~-~f~~~~~vG~~f~i~~v~~~g~~iEVstfR~~~~~~~~~~~~~~~-~p~g~~eeDl 77 (415)
|||++|+|+||++++. ++++.+ .|. .+|+.|+++. .++..+||+++|++.+...+.....+. .+.+++++||
T Consensus 14 LLgr~p~DiDivV~g~~~~~~l~~~~~---~vg~~f~V~~--~~~~~~Eiat~R~E~~~~~g~~~~~v~~~~~~tieeDL 88 (360)
T PRK13296 14 LLGITPKDKDWVVVGATEDEMLANGFI---KIAANFPVFI--HPQTKQEYALARSEKKTASGYHGFEVNFSKYITLEDDL 88 (360)
T ss_pred HcCCCCCCeeEEecCCcHHHHHHhhhh---hcCCceEEEE--ECCeeEEEeeccccccccCCCCCCeEeeCCCCCHHHHH
Confidence 6899999999987665 455433 342 4688888753 356789999999986554332211111 1234789999
Q ss_pred hhhhhhccCCccccceeecCCCCeEecccCcHHHHccCceeecCCcccchhhchhhHHHHHHHHHHh---CCCCCHHHHH
Q 014947 78 IRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARL---GFRFSRETAH 154 (415)
Q Consensus 78 ~r~~da~RRDFTINAla~~~~~~~i~D~~gG~~DL~~~~iR~v~~p~~~f~eDPlRiLRa~RFaa~l---gf~i~~~T~~ 154 (415)
.|||||||||||++.+ .|+|||||++||++|+||++++ +|.|||+|||||+|||++| ||+|+++|.+
T Consensus 89 ------~RRDFTINAmA~d~~g-~liDpfgG~~DL~~kiLR~v~~---sF~EDPLRILRa~RFaarL~~~gF~ie~eT~~ 158 (360)
T PRK13296 89 ------KRRDLTINSIAIDQNN-KVIDPFNGQADLQNRILRHTSI---AFIEDPLRVVRLARFKAQLSNFNFSIAQEMLA 158 (360)
T ss_pred ------HhcCcceeeeEECCCC-CEecCCCCHHHHHCCceecCcc---ccccCHHHHHHHHHHHHHhccCCCCcCHHHHH
Confidence 6999999999999874 5789999999999999999953 8999999999999999986 9999999999
Q ss_pred HHhhhh--hhhcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHcCCchhhchhhHHHH
Q 014947 155 FVKHLS--PSILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYL 208 (415)
Q Consensus 155 ~i~~~~--~~l~~vs~eRi~~El~kll~~~~~~~~l~~l~~~gll~~l~P~~~~~~ 208 (415)
+|++++ ..|..+|+|||+.|+.|+|.. |..+++.|.++|+|..+||++.++.
T Consensus 159 ~i~~~~~~~~L~~vs~ERI~~El~kiL~~--p~~~l~~L~~~glL~~lfPel~~~~ 212 (360)
T PRK13296 159 LIKELVKTGELNHLTRERLHIEFVKALNN--PKIFFTTLKELEALKIIFPNISCIL 212 (360)
T ss_pred HHHHhhhhhhhhcCCHHHHHHHHHHHHhC--hHHHHHHHHHcCCHHHhCcchHHHh
Confidence 999985 589999999999999999974 6789999999999999999998653
No 11
>PF01743 PolyA_pol: Poly A polymerase head domain; InterPro: IPR002646 This group includes nucleic acid independent RNA polymerases, such as polynucleotide adenylyltransferase (2.7.7.19 from EC), which adds the poly (A) tail to mRNA. This group also includes the tRNA nucleotidyltransferase that adds the CCA to the 3' of the tRNA 2.7.7.25 from EC.; GO: 0003723 RNA binding, 0016779 nucleotidyltransferase activity, 0006396 RNA processing; PDB: 1VFG_A 3H38_A 3H3A_B 3H39_B 3H37_A 1MIY_A 1MIV_B 1MIW_B 1OU5_B 3AQN_A ....
Probab=99.92 E-value=9.7e-26 Score=197.19 Aligned_cols=111 Identities=31% Similarity=0.454 Sum_probs=85.7
Q ss_pred CCCCCCCcEEEEeCCCHHHHHHHhccCc----ccccccceEEEEeCCEEEEEeccccccccccccccccccCcCCCchHh
Q 014947 1 MLNRIPKDFDIITSAELKEVVRVFSQCE----IVGKRFPICHVHFENTIVEVSSFSTSGRRFSRDFKYEFERPIGCDEKD 76 (415)
Q Consensus 1 LLg~~pkD~DIaT~a~peev~~~f~~~~----~vG~~f~i~~v~~~g~~iEVstfR~~~~~~~~~~~~~~~~p~g~~eeD 76 (415)
|||++|+|+||+|+++|+++++.|.+.. .+|++|+++++..++..+||++||++.+....... ....-..++++|
T Consensus 12 Llg~~~~DiDi~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~di~~~r~~~~~~~~~~~-~~~~~~~~i~~D 90 (126)
T PF01743_consen 12 LLGRPPKDIDIVTNADPEEFAKLLAKKLGGVFVVGKRFGTVRVVFGGGSIDIASFRGEFYIGDGRNP-DVVEFGPTIEED 90 (126)
T ss_dssp HHTS--SEEEEEESS-HHHHHHHHCTTCCEEEEEETTTTEEEEEETTCEEEEEE-ECE--SSSSS---CCCCCSSTHHHH
T ss_pred HcCCCCCCeEEEEeCCHHHHHHHHHhhcccccccccccceeeecCCCcccccccccccccccccccc-ccccccCCHHHH
Confidence 5899999999999999999999997653 34899999999999988999999987654332111 011112367888
Q ss_pred hhhhhhhccCCccccceeecCCCCeEecccCcHHHHccCcee
Q 014947 77 FIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQ 118 (415)
Q Consensus 77 l~r~~da~RRDFTINAla~~~~~~~i~D~~gG~~DL~~~~iR 118 (415)
| .|||||||||||++..+.|+||+||++||++|+||
T Consensus 91 l------~rRDFTiNAla~~~~~~~liDp~gG~~DL~~~~iR 126 (126)
T PF01743_consen 91 L------KRRDFTINALAYDLETGKLIDPFGGLEDLKNKIIR 126 (126)
T ss_dssp H------CTSSBGGGSEEEECTTTCEEESSSHHHHHHTTEE-
T ss_pred H------HhcCCeehheeEECCCCeEEcCCCCHHHHHcCCCC
Confidence 8 79999999999999988899999999999999998
No 12
>cd05398 NT_ClassII-CCAase Nucleotidyltransferase (NT) domain of ClassII CCA-adding enzymes. CCA-adding enzymes add the sequence [cytidine(C)-cytidine-adenosine (A)], one nucleotide at a time, onto the 3' end of tRNA, in a template-independent reaction. This Class II group is comprised mainly of eubacterial and eukaryotic enzymes and includes Bacillus stearothermophilus CCAase, Escherichia coli poly(A) polymerase I, human mitochondrial CCAase, and Saccharomyces cerevisiae CCAase (CCA1). CCA-adding enzymes have a single catalytic pocket, which recognizes both ATP and CTP substrates. Included in this subgroup are CC- and A-adding enzymes from various ancient species of bacteria such as Aquifex aeolicus; these enzymes collaborate to add CCA to tRNAs. This family belongs to the Pol beta-like NT superfamily. In the majority of enzymes in this superfamily, two carboxylates, Dx[D/E], together with a third more distal carboxylate, coordinate two divalent metal cations involved in a two-metal io
Probab=99.90 E-value=1.2e-23 Score=187.03 Aligned_cols=105 Identities=29% Similarity=0.386 Sum_probs=85.1
Q ss_pred CCCCCCCcEEEEeCC-CHHHHHHHhcc--Cccc--ccccceEEEEeCCEEEEEeccccccccccccccccccCcCCCchH
Q 014947 1 MLNRIPKDFDIITSA-ELKEVVRVFSQ--CEIV--GKRFPICHVHFENTIVEVSSFSTSGRRFSRDFKYEFERPIGCDEK 75 (415)
Q Consensus 1 LLg~~pkD~DIaT~a-~peev~~~f~~--~~~v--G~~f~i~~v~~~g~~iEVstfR~~~~~~~~~~~~~~~~p~g~~ee 75 (415)
|||++|+|+||+|++ .++++.++++. ...+ |+.|++++|..++..+||++||++.+...+.. ...+..++++
T Consensus 30 Llg~~~~DiDi~v~~~~~~~~~~l~~~~~~~~v~~~~~f~t~~v~~~~~~~di~~~R~e~~~~~~~~---p~~~~~~~~~ 106 (139)
T cd05398 30 LLGRPPKDIDIATDADGPEFAEALFKKIGGRVVGLGEEFGTATVVINGLTIDVATLRTETYTDPGRR---PPVVGFTIEE 106 (139)
T ss_pred HcCCCCCCceEEEeCCCHHHHHHHHHhcCCcEEecCCcccEEEEEECCEEEEEcccccccccCCCCC---CcccCCCCHH
Confidence 689999999999999 78888888852 3344 56999999999999999999998875543211 1112356688
Q ss_pred hhhhhhhhccCCccccceeecCCCCeEecccCcHHHHcc
Q 014947 76 DFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRK 114 (415)
Q Consensus 76 Dl~r~~da~RRDFTINAla~~~~~~~i~D~~gG~~DL~~ 114 (415)
|| .|||||||||||++.++.|+|||||++||++
T Consensus 107 Dl------~RRDFTINAmA~~~~~~~liDp~~G~~DL~~ 139 (139)
T cd05398 107 DL------LRRDFTINAMAYDLDDGELIDPFGGLKDLEN 139 (139)
T ss_pred HH------hhcCcchhheEecCCCCEEEeCCCCHHHHhC
Confidence 88 6999999999999987889999999999985
No 13
>PRK03381 PII uridylyl-transferase; Provisional
Probab=99.44 E-value=4.2e-13 Score=148.81 Aligned_cols=110 Identities=20% Similarity=0.126 Sum_probs=91.6
Q ss_pred HccCceeecCCcccchhhchhhHHHHHHHHHHhCCCCCHHHHHHHhhhhhhhcCCCHHHHHHHHHHHHhCCCH-HHHHHH
Q 014947 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLAYGSA-EASLRL 190 (415)
Q Consensus 112 L~~~~iR~v~~p~~~f~eDPlRiLRa~RFaa~lgf~i~~~T~~~i~~~~~~l~~vs~eRi~~El~kll~~~~~-~~~l~~ 190 (415)
+.++.|-+..+ .+|.+||+||||++|||+++||.|+++|+++|+++++.+..++.||++.|+.|+|.++++ ..+++.
T Consensus 313 ~~~~~l~~~~~--~~~~~DplRiLRa~rfaa~lgf~I~~~T~~~i~~~~~~l~~~~~eri~~ef~kiL~~~~~~~~~l~~ 390 (774)
T PRK03381 313 EHAGEVVLARD--ARPARDPGLVLRVAAAAATTGLPIAAATLSRLAASAPPLPTPWPAEARDDLLVLLGAGPAAVAVIEA 390 (774)
T ss_pred EECCEEEeCCc--cccccCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCccccHHHHHHHHHHHcCCCchHHHHHH
Confidence 34566666544 689999999999999999999999999999999999999999999999999999988765 469999
Q ss_pred HHHcCCchhhchhhHHHHhh--cCCccC-chhHHHH
Q 014947 191 LWKFGLLEVLLPIQAAYLVK--HGFRRR-DKRSNLL 223 (415)
Q Consensus 191 l~~~gll~~l~P~~~~~~~~--~~~~~~-~~~~~~l 223 (415)
|.++|+|..++|+++..... ....|. ++.+|++
T Consensus 391 m~~~GvL~~~iPE~~~i~~~~Q~~~~H~ytVd~Htl 426 (774)
T PRK03381 391 LDRTGLWGRLLPEWEAVRDLPPRDPVHRWTVDRHLV 426 (774)
T ss_pred HHHhCCHHHhchhHHHhhCCCCCCCCccChHHHHHH
Confidence 99999999999999876533 233332 4555554
No 14
>PF12627 PolyA_pol_RNAbd: Probable RNA and SrmB- binding site of polymerase A; PDB: 1OU5_B 3H38_A 3H3A_B 3H39_B 3H37_A 3AQN_A 3AQK_A 3AQM_B 3AQL_B 1MIY_A ....
Probab=99.42 E-value=2.7e-13 Score=104.38 Aligned_cols=62 Identities=27% Similarity=0.456 Sum_probs=57.4
Q ss_pred CCCCCHHHHHHHhhhhhhhcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHcCCchhhchhhHH
Q 014947 145 GFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAA 206 (415)
Q Consensus 145 gf~i~~~T~~~i~~~~~~l~~vs~eRi~~El~kll~~~~~~~~l~~l~~~gll~~l~P~~~~ 206 (415)
||+|+++|..+|+++++.|.++|+|||+.|+.|+|.++++..+++.|.++|++..+||++++
T Consensus 1 gF~ie~~t~~ai~~~~~~L~~is~ERi~~El~kil~~~~~~~~~~~l~~~gll~~ifP~l~~ 62 (64)
T PF12627_consen 1 GFKIEPETEEAIKENAELLSKISKERIREELEKILSSPNPSRAFKLLDELGLLEYIFPELDA 62 (64)
T ss_dssp T-EE-HHHHHHHHHHGGGGGGS-HHHHHHHHHHHHTSTTHHHHHHHHHHTTCHHHHSTTHHT
T ss_pred CCccCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCHHHHHHHHHHcCCHHHHCccccc
Confidence 89999999999999999999999999999999999999999999999999999999999864
No 15
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=99.41 E-value=5.7e-13 Score=149.27 Aligned_cols=118 Identities=18% Similarity=0.151 Sum_probs=98.1
Q ss_pred HccCceeecCCcccchhhchhhHHHHHHHHHHhCCCCCHHHHHHHhhhhhhhcCCCH--HHHHHHHHHHHhCC-CHHHHH
Q 014947 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDR--GRLLMEMNYMLAYG-SAEASL 188 (415)
Q Consensus 112 L~~~~iR~v~~p~~~f~eDPlRiLRa~RFaa~lgf~i~~~T~~~i~~~~~~l~~vs~--eRi~~El~kll~~~-~~~~~l 188 (415)
+.+|.|++..+ .+|.|||+||||++||++++||.|+++|+.+|++++..|..++. +|++.|+.+||.++ ++..++
T Consensus 319 ~~~~~l~~~~~--~~f~eDPlriLR~~rfaa~~~~~i~~~T~~~i~~~~~~l~~~~~~~er~~~ef~~iL~~~~~~~~~l 396 (850)
T TIGR01693 319 EDGGELVLART--AVFERDPALLLRLFAIAAQRGLPIHPAALRQLTASLPLLPTPLREDPEARELFLELLTSGNGTVRAL 396 (850)
T ss_pred EECCEEEecCc--cchhhCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCchhhcCHHHHHHHHHHHcCCCchHHHH
Confidence 67899999875 79999999999999999999999999999999999999999988 99999999999976 568899
Q ss_pred HHHHHcCCchhhchhhHHHHhhc--CCcc-CchhHHHHHHHHHHHHh
Q 014947 189 RLLWKFGLLEVLLPIQAAYLVKH--GFRR-RDKRSNLLLSLFSNLDK 232 (415)
Q Consensus 189 ~~l~~~gll~~l~P~~~~~~~~~--~~~~-~~~~~~~l~~~l~~ld~ 232 (415)
+.|.++|+|..++|++....... ...| .++.+|++ .++.++..
T Consensus 397 ~~m~~~gvL~~~iPe~~~i~~~~Q~~~~H~~tVd~Htl-~~l~~~~~ 442 (850)
T TIGR01693 397 RAMNRAGVLGRFLPEWGRIVGQMQFDLFHVYTVDEHTL-RTVVHLAP 442 (850)
T ss_pred HHHHHhCCHHHhCchHhhheeccccCceeecchhHHHH-HHHHHHHH
Confidence 99999999999999998764332 2223 25555554 34444443
No 16
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=99.40 E-value=1.3e-12 Score=142.57 Aligned_cols=108 Identities=15% Similarity=0.102 Sum_probs=91.3
Q ss_pred HccCceeecCCcccchhhchhhHHHHHHHHHHhCCCCCHHHHHHHhhhhhhhcCCCHHHHHHHHHHHHhCC-CHHHHHHH
Q 014947 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLAYG-SAEASLRL 190 (415)
Q Consensus 112 L~~~~iR~v~~p~~~f~eDPlRiLRa~RFaa~lgf~i~~~T~~~i~~~~~~l~~vs~eRi~~El~kll~~~-~~~~~l~~ 190 (415)
+.+|.|++++++. + |||+||||++|||+++||.|+++|+++|+++ ..+.....+|+..|+.|+|.++ ++..+++.
T Consensus 275 ~~~~~I~~~~~~~--~-eDPlRiLRafrfAa~~gf~I~~~Tl~~i~~~-~~L~~~~~er~~~ef~kiL~s~~~~~~~L~~ 350 (693)
T PRK00227 275 DANGTIALSRTPD--L-DDPALPLRVAAAAARTGLPVSESVWKRLEEC-PELPEPWPASAAGDFFRLLSSPVNSRRVIKQ 350 (693)
T ss_pred EECCEEEeCCCCc--c-cCHHHHHHHHHHHHhcCCCcCHHHHHHHHhh-hhcchhhHHHHHHHHHHHHcCCCChHHHHHH
Confidence 5678999999864 3 9999999999999999999999999999988 6666778899999999999996 88999999
Q ss_pred HHHcCCchhhchhhHHHHhh--cCCcc-CchhHHHH
Q 014947 191 LWKFGLLEVLLPIQAAYLVK--HGFRR-RDKRSNLL 223 (415)
Q Consensus 191 l~~~gll~~l~P~~~~~~~~--~~~~~-~~~~~~~l 223 (415)
|.++|+|..+||++...... ....| .++.+|++
T Consensus 351 M~~~GvL~~llPE~~~i~g~~Q~d~yH~ytVDeHTL 386 (693)
T PRK00227 351 MDRHGLWERIVPEWDRIRGLMPREPSHIHTIDEHSL 386 (693)
T ss_pred HHHcCCHHHHhHHHHHHhCCCCCCCCCCCcHHHHHH
Confidence 99999999999999877543 23333 35555554
No 17
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=99.37 E-value=1.2e-12 Score=147.06 Aligned_cols=130 Identities=16% Similarity=0.175 Sum_probs=108.3
Q ss_pred EecccCcHHHHccCceeecCCcccchhhchhhHHHHHHHHHHhC--CCCCHHHHHHHhhhhhhhcCC--CHHHHHHHHHH
Q 014947 102 IYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLG--FRFSRETAHFVKHLSPSILKL--DRGRLLMEMNY 177 (415)
Q Consensus 102 i~D~~gG~~DL~~~~iR~v~~p~~~f~eDPlRiLRa~RFaa~lg--f~i~~~T~~~i~~~~~~l~~v--s~eRi~~El~k 177 (415)
.+||++|..|+++|.|+++++ ..|.+||+||||++||+++.+ ..|+++|+.+|++++..+..+ +.+|+..|+.+
T Consensus 339 ~~~~~~~~~~l~~~~i~~~~~--~~f~~dP~riLr~f~~~a~~~~i~~i~~~t~~~i~~~~~~i~~~~~~~~~~~~~f~~ 416 (895)
T PRK00275 339 TIQPLNSRFQLRDGYIEATHP--NVFKRTPFALLEIFVLMAQHPEIKGVRADTIRLLREHRHLIDDAFRNDIRNTSLFIE 416 (895)
T ss_pred cccccCCCeEEECCEEEecCh--hhhhcCHHHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHhcCchhccCHHHHHHHHH
Confidence 469999999999999999988 569999999999999999954 467799999999999999887 67789999999
Q ss_pred HHhCCCH-HHHHHHHHHcCCchhhchhhHHHHhhc--C-CccCchhHHHHHHHHHHHHhhh
Q 014947 178 MLAYGSA-EASLRLLWKFGLLEVLLPIQAAYLVKH--G-FRRRDKRSNLLLSLFSNLDKLL 234 (415)
Q Consensus 178 ll~~~~~-~~~l~~l~~~gll~~l~P~~~~~~~~~--~-~~~~~~~~~~l~~~l~~ld~~~ 234 (415)
||.++++ ..+++.|.++|+|..++|++....... . ++..++.+|++ .++.+++.+.
T Consensus 417 iL~~~~~~~~~l~~M~~~GvL~~~iPe~~~i~~~~Q~d~yH~ytVdeHtl-~~v~~l~~l~ 476 (895)
T PRK00275 417 LFKCPIGIHRNLRRMNRYGILGRYLPEFGHIVGQMQHDLFHIYTVDAHTL-NLIKNLRKLR 476 (895)
T ss_pred HHcCCCchHHHHHHHHHcCCHHHhCchHhhEeeeccCcccccCcHHHHHH-HHHHHHHHhh
Confidence 9999884 678999999999999999999764332 3 33346777766 4555565543
No 18
>PRK03059 PII uridylyl-transferase; Provisional
Probab=99.32 E-value=4.6e-12 Score=141.94 Aligned_cols=120 Identities=15% Similarity=0.106 Sum_probs=99.8
Q ss_pred HHHccCceeecCCcccchhhchhhHHHHHHHHHHh-C-CCCCHHHHHHHhhhhhhhcCC--CHHHHHHHHHHHHhCCCH-
Q 014947 110 EDIRKAKVQTVIPASTSFQEDCARILRAIRIAARL-G-FRFSRETAHFVKHLSPSILKL--DRGRLLMEMNYMLAYGSA- 184 (415)
Q Consensus 110 ~DL~~~~iR~v~~p~~~f~eDPlRiLRa~RFaa~l-g-f~i~~~T~~~i~~~~~~l~~v--s~eRi~~El~kll~~~~~- 184 (415)
-.+.+|.||++++ ..|.+||+||||++||++++ | +.|+++|..+|+.++..+..+ +.||+..|+.+||.++++
T Consensus 327 f~~~~~~i~~~~~--~~f~~dP~riLr~fr~aa~~~~~~~i~~~T~~~i~~~~~~i~~~~~~~er~~~ef~~iL~~~~~~ 404 (856)
T PRK03059 327 FVEKQGMLEIASD--DLFERHPHAILEAFLLYQQTPGLKGLSARTLRALYNARDVMNAAFRRDPVNRALFMQILQQPRGI 404 (856)
T ss_pred eEEECCEEEecCc--hhhhcCHHHHHHHHHHHHhcCCccCcCHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHcCCCch
Confidence 3578999999987 56999999999999999999 5 699999999999999999988 779999999999999885
Q ss_pred HHHHHHHHHcCCchhhchhhHHHHhhc--C-CccCchhHHHHHHHHHHHHh
Q 014947 185 EASLRLLWKFGLLEVLLPIQAAYLVKH--G-FRRRDKRSNLLLSLFSNLDK 232 (415)
Q Consensus 185 ~~~l~~l~~~gll~~l~P~~~~~~~~~--~-~~~~~~~~~~l~~~l~~ld~ 232 (415)
..+++.|.++|+|..++|++....... . ++..++.+|++ .++.++..
T Consensus 405 ~~~l~~m~~~GlL~~~lPe~~~i~~~~Q~~~~H~ytVd~Htl-~~v~~l~~ 454 (856)
T PRK03059 405 THALRLMNQTSVLGRYLPNFRRIVGQMQHDLFHVYTVDQHIL-MVLRNLRR 454 (856)
T ss_pred HHHHHHHHHhCCHHHhCchHhheeeeecccccccCcHhHHHH-HHHHHHHH
Confidence 689999999999999999999875433 2 33345666665 34444444
No 19
>PRK05092 PII uridylyl-transferase; Provisional
Probab=99.23 E-value=1.8e-11 Score=138.49 Aligned_cols=117 Identities=15% Similarity=0.283 Sum_probs=94.3
Q ss_pred HccCceeecCCcccchhhchhhHHHHHHHHHHhCCCCCHHHHHHHhhhhhhhcC-----CCHHHHHHHHHHHHhCCCHHH
Q 014947 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILK-----LDRGRLLMEMNYMLAYGSAEA 186 (415)
Q Consensus 112 L~~~~iR~v~~p~~~f~eDPlRiLRa~RFaa~lgf~i~~~T~~~i~~~~~~l~~-----vs~eRi~~El~kll~~~~~~~ 186 (415)
+.+|.|+++++ .+|.|||+||||++|||+++||.|+++|+.+|++++..|.. .+.+|++.|+ ++..+++..
T Consensus 384 ~~~~~i~~~~~--~~f~edPlriLR~fr~aa~~~~~i~~~T~~~i~~~~~~i~~~~~~~~~~~r~f~ei--l~~~~~~~~ 459 (931)
T PRK05092 384 VDNGRINLADP--DVFERDPVNLIRLFHLADRHGLDIHPDAMRLVTRSLRLIDAALREDPEANRLFLDI--LTSRRNPER 459 (931)
T ss_pred EECCEEEecCh--hhhhhCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcChhhccCHHHHHHHHHH--HcCCCchHH
Confidence 57789999977 68999999999999999999999999999999999988776 5779999887 455567889
Q ss_pred HHHHHHHcCCchhhchhhHHHHhh--cCCcc-CchhHHHHHHHHHHHHhh
Q 014947 187 SLRLLWKFGLLEVLLPIQAAYLVK--HGFRR-RDKRSNLLLSLFSNLDKL 233 (415)
Q Consensus 187 ~l~~l~~~gll~~l~P~~~~~~~~--~~~~~-~~~~~~~l~~~l~~ld~~ 233 (415)
+++.|.++|+|..++|++...... ....| .++.+|++ .++.++..+
T Consensus 460 ~l~~m~~~GvL~~~iPef~~i~~~~Q~d~~H~ytVd~Htl-~~l~~l~~~ 508 (931)
T PRK05092 460 VLRRMNEAGVLGRFIPDFGRIVAMMQFNMYHHYTVDEHTI-RAIGVLAEI 508 (931)
T ss_pred HHHHHHHhCChHHhcccHHhcccccccccceeccHhHHHH-HHHHHHHHH
Confidence 999999999999999999876433 22233 35666665 344555443
No 20
>PHA01806 hypothetical protein
Probab=99.20 E-value=2.6e-11 Score=112.08 Aligned_cols=75 Identities=20% Similarity=0.138 Sum_probs=53.5
Q ss_pred CCCCCCCcEEEEe-CCCHHHHHHHhccCc----ccccccceEE---------------------EEeCCEEEEEeccccc
Q 014947 1 MLNRIPKDFDIIT-SAELKEVVRVFSQCE----IVGKRFPICH---------------------VHFENTIVEVSSFSTS 54 (415)
Q Consensus 1 LLg~~pkD~DIaT-~a~peev~~~f~~~~----~vG~~f~i~~---------------------v~~~g~~iEVstfR~~ 54 (415)
|||++|+|+||+| .+.|++++++..... ....+.+..+ +..+|..+||+.+.++
T Consensus 49 Llgr~~kDiDivt~~~~pe~v~~L~~klG~k~V~~~~~~ggwr~~~~~~gd~~~~~~~~~l~g~~vl~g~tvD~A~~~g~ 128 (200)
T PHA01806 49 MHGAEPKDIDIALYGMDDRQAELLIGCILPKLVSRFLRDGGWSQEYHDGGDGGIFKGVVSLKGCRGLEGMDVDFNYYDTD 128 (200)
T ss_pred HcCCCCCceEEEccCCCHHHHHHHHHHhCCcccccccccceeeeeccccccccccccceeeeeeEEeCCeEEEeeeccCC
Confidence 5899999999999 578999988764211 1222333444 4567778888876542
Q ss_pred cccccccccccccCcCCCchHhhhhhhhhccCCcccc--ceeecCC
Q 014947 55 GRRFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTIN--GLMFDPY 98 (415)
Q Consensus 55 ~~~~~~~~~~~~~~p~g~~eeDl~r~~da~RRDFTIN--Ala~~~~ 98 (415)
++++|| .||||||| |+||++.
T Consensus 129 -----------------sleeDL------~rRDFTINq~AIA~~~~ 151 (200)
T PHA01806 129 -----------------SVGEVM------ESFDYTINQVGIAYNWP 151 (200)
T ss_pred -----------------CHHHHH------HHcCCccchhhhcccCC
Confidence 459999 69999999 8888764
No 21
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=99.10 E-value=2.2e-10 Score=128.50 Aligned_cols=118 Identities=13% Similarity=0.163 Sum_probs=93.4
Q ss_pred HHccCceeecCCcccchhhchhhHHHHHHHHHHh-CCCCCHHHHHHHhhh----hhhhcCCCHHHHHHHHHHHHhCCCH-
Q 014947 111 DIRKAKVQTVIPASTSFQEDCARILRAIRIAARL-GFRFSRETAHFVKHL----SPSILKLDRGRLLMEMNYMLAYGSA- 184 (415)
Q Consensus 111 DL~~~~iR~v~~p~~~f~eDPlRiLRa~RFaa~l-gf~i~~~T~~~i~~~----~~~l~~vs~eRi~~El~kll~~~~~- 184 (415)
.+.++.|.+..+ ..|.+||+||||++||++++ ||.|+++|+.+|+++ ...+..+|.+| .||.|+|.++++
T Consensus 325 ~~~~~~i~~~~~--~~f~~dp~riLr~fr~~a~~~~~~i~~~t~~~i~~~~~~~~~~l~~~~~eR--~ef~kiL~~~~~~ 400 (854)
T PRK01759 325 YLINNAICLRNP--DCFEQQPESILDLFFYLTQYPQAEIHSTTLRQLRLALEQLQQPLCELPAAR--ERFLRLFNQPNAI 400 (854)
T ss_pred EEECCEEEecCh--hhhhhCHHHHHHHHHHHHHCCCCCcCHHHHHHHHHHHHhccchhccCHHHH--HHHHHHHcCCCch
Confidence 467788887755 68999999999999999999 699999999977755 45667789898 899999998775
Q ss_pred HHHHHHHHHcCCchhhchhhHHHHhh--cCCcc-CchhHHHHHHHHHHHHhh
Q 014947 185 EASLRLLWKFGLLEVLLPIQAAYLVK--HGFRR-RDKRSNLLLSLFSNLDKL 233 (415)
Q Consensus 185 ~~~l~~l~~~gll~~l~P~~~~~~~~--~~~~~-~~~~~~~l~~~l~~ld~~ 233 (415)
..+++.|.++|+|..++|++...... ....| .++.+|++ .++.+++.+
T Consensus 401 ~~~l~~M~~~GvL~~~iPe~~~i~~~~Q~d~yH~ytVd~Htl-~~l~~l~~~ 451 (854)
T PRK01759 401 KRALVPMHQYGVLTAYLPQWKGIVGLMQFDLFHIYTVDEHTL-RVMLKLESF 451 (854)
T ss_pred HHHHHHHHHhCCHHHhChHHHheeeccCCcccccCcHHHHHH-HHHHHHHHH
Confidence 68899999999999999999976433 22223 35666665 355555544
No 22
>PRK05007 PII uridylyl-transferase; Provisional
Probab=98.96 E-value=1.9e-09 Score=121.57 Aligned_cols=120 Identities=15% Similarity=0.155 Sum_probs=93.8
Q ss_pred HHccCceeecCCcccchhhchhhHHHHHHHHHHhC--CCCCHHHHHHHhhhhhhhcCC--CHHHHHHHHHHHHhCCCHHH
Q 014947 111 DIRKAKVQTVIPASTSFQEDCARILRAIRIAARLG--FRFSRETAHFVKHLSPSILKL--DRGRLLMEMNYMLAYGSAEA 186 (415)
Q Consensus 111 DL~~~~iR~v~~p~~~f~eDPlRiLRa~RFaa~lg--f~i~~~T~~~i~~~~~~l~~v--s~eRi~~El~kll~~~~~~~ 186 (415)
-+.+|.|+++++ ..|.+||+||||++||+++.+ -.|+++|+.+|+.++..+..- ..+++..|+.|||.++++..
T Consensus 349 ~~~~~~i~~~~~--~~f~~dp~~iLr~f~~aa~~~~i~~i~~~t~~~i~~~~~~i~~~~~~~~~~~~~f~~iL~~~~~~~ 426 (884)
T PRK05007 349 QLRGTLIDLRDE--TLFQRQPEAILRMFYLMARNSNITGIYSTTLRQLRHARRHLNQPLCEIPEARKLFMEILRHPGAVS 426 (884)
T ss_pred EEECCEEeecCh--hhhhhCHHHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHcCCCchH
Confidence 367789999998 459999999999999999955 356799999999998877731 24569999999999988874
Q ss_pred -HHHHHHHcCCchhhchhhHHHHhhc--C-CccCchhHHHHHHHHHHHHhh
Q 014947 187 -SLRLLWKFGLLEVLLPIQAAYLVKH--G-FRRRDKRSNLLLSLFSNLDKL 233 (415)
Q Consensus 187 -~l~~l~~~gll~~l~P~~~~~~~~~--~-~~~~~~~~~~l~~~l~~ld~~ 233 (415)
+++.|.++|+|..++|++..+.... . ++..++.+|++ .++.++..+
T Consensus 427 ~~l~~m~~~GlL~~~iPe~~~i~~~~Q~d~~H~ytVd~Htl-~~l~~l~~~ 476 (884)
T PRK05007 427 RALLPMHRHSVLSAYMPQWSHIVGQMQFDLFHAYTVDEHTI-RVLLKLESF 476 (884)
T ss_pred HHHHHHHHhCCHHHhCchHhheeeccccCccccCcHhHHHH-HHHHHHHHH
Confidence 9999999999999999999765332 2 33335666665 344555443
No 23
>PRK04374 PII uridylyl-transferase; Provisional
Probab=98.47 E-value=6.8e-07 Score=100.80 Aligned_cols=117 Identities=12% Similarity=0.064 Sum_probs=92.7
Q ss_pred ccCceeecCCcccchhhchhhHHHHHHHHHHhC--CCCCHHHHHHHhhhhhhhcCC--CHHHHHHHHHHHHhCCCHHHHH
Q 014947 113 RKAKVQTVIPASTSFQEDCARILRAIRIAARLG--FRFSRETAHFVKHLSPSILKL--DRGRLLMEMNYMLAYGSAEASL 188 (415)
Q Consensus 113 ~~~~iR~v~~p~~~f~eDPlRiLRa~RFaa~lg--f~i~~~T~~~i~~~~~~l~~v--s~eRi~~El~kll~~~~~~~~l 188 (415)
.+|.|-...+ ..|.+||.+|||.+..+++.+ ..|++.|+..++++...+..- ...|++.||.|||.++++..++
T Consensus 340 ~~~~i~~~~~--~~f~~~P~~il~lf~~~~~~~~~~~i~~~t~r~l~~~~~~l~~~~~~~~ri~~ef~kiL~~~~~~~~l 417 (869)
T PRK04374 340 RRGYLAADAD--SWPDGDVLQVFALFAQWAAHREVRGLHSLTARALAEVLRDLPAYDVADATARERFMALLRGPRAVETL 417 (869)
T ss_pred ECCEEeecCc--ccchhCHHHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHhcCccccCCHHHHHHHHHHHcCCChhHHH
Confidence 3445544433 689999999999999999999 899999999999988877542 5779999999999999999999
Q ss_pred HHHHHcCCchhhchhhHHHHhh--cCCcc-CchhHHHHHHHHHHHHh
Q 014947 189 RLLWKFGLLEVLLPIQAAYLVK--HGFRR-RDKRSNLLLSLFSNLDK 232 (415)
Q Consensus 189 ~~l~~~gll~~l~P~~~~~~~~--~~~~~-~~~~~~~l~~~l~~ld~ 232 (415)
+.|.++|+|..++|++...... ....| .++.+|++ .++.++..
T Consensus 418 ~~m~~~GvL~~~lPE~~~i~~~~Q~d~yH~ytVd~Htl-~~l~~l~~ 463 (869)
T PRK04374 418 NRMARLGVLGQWIPAFASVSGRMQFDLFHVYTVDQHTL-MVLRNIAL 463 (869)
T ss_pred HHHHHhCCHHHHhhhHHHHhccccccCccCCcHHHHHH-HHHHHHHH
Confidence 9999999999999999987543 23333 35666665 34445543
No 24
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.014 Score=64.98 Aligned_cols=109 Identities=19% Similarity=0.202 Sum_probs=79.7
Q ss_pred ccCceeecCCcccchhhchhhHHHHHHHHHHhCCCC-CHHHHHHHhhhhhhhcC-CC-HHHHHHHHHHHHh-CCCHHHHH
Q 014947 113 RKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRF-SRETAHFVKHLSPSILK-LD-RGRLLMEMNYMLA-YGSAEASL 188 (415)
Q Consensus 113 ~~~~iR~v~~p~~~f~eDPlRiLRa~RFaa~lgf~i-~~~T~~~i~~~~~~l~~-vs-~eRi~~El~kll~-~~~~~~~l 188 (415)
.+|.|-.-.+ .-|..||..|||.+-++++.|... .|+|+.++..+.+.|.. ++ -+.-..-+..||. .+++...+
T Consensus 337 ~~g~I~l~~~--~~f~~dP~~ilrlf~~~~~~~~~~~~~~Tlr~L~~a~~~l~~~l~~~peA~~~Fl~il~~~~~~~r~l 414 (867)
T COG2844 337 RNGRIELRDP--DLFERDPEAILRLFAIMAQTGLITGHPDTLRQLRRALRLLNQPLREDPEARRLFLSILRSPNAIRRTL 414 (867)
T ss_pred eCCEEEecCc--hhhhhChHHHHHHHHHHHhcCCcccchHHHHHHHHhccccCcccccCHHHHHHHHHHHhCCCcHHHHH
Confidence 4566666554 579999999999999999999988 79999999988776653 22 0222333444565 45678999
Q ss_pred HHHHHcCCchhhchhhHHHHhhc---CCccCchhHHHH
Q 014947 189 RLLWKFGLLEVLLPIQAAYLVKH---GFRRRDKRSNLL 223 (415)
Q Consensus 189 ~~l~~~gll~~l~P~~~~~~~~~---~~~~~~~~~~~l 223 (415)
+.|.++|+|..++|++...-.+. -|++.++.+|++
T Consensus 415 ~~Mn~~GVLgrylPew~~Ivg~MQfdlfH~YTVDeH~l 452 (867)
T COG2844 415 RPMNRYGVLGRYLPEWGKIVGLMQFDLFHIYTVDEHTL 452 (867)
T ss_pred HHHHHhhhHHHhcccHHhhhcccccCcceecchhHHHH
Confidence 99999999999999988653332 244446666665
No 25
>cd07749 NT_Pol-beta-like_1 Nucleotidyltransferase (NT) domain of an uncharacterized subgroup of the Pol beta-like NT superfamily. The Pol beta-like NT superfamily includes DNA polymerase beta and other family X DNA Polymerases, as well as Class I and Class II CCA-adding enzymes, RelA- and SpoT-like ppGpp synthetases and hydrolases, 2'5'-oligoadenylate (2-5A)synthetases, Escherichia coli adenylyltransferase (GlnE), Escherichia coli uridylyl transferase (GlnD), poly(A) polymerases, terminal uridylyl transferases, Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins. Proteins belonging to this subgroup are uncharacterized. In the majority of the Pol beta-like superfamily NTs, two carboxylates, Dx[D/E], together with a third more distal carboxylate, coordinate two divalent metal cations essential for catalysis. These divalent metal ions are involved in a two-metal ion mechanism of nucleotide addition. These carboxylate residues are conserved in this subgroup.
Probab=59.51 E-value=22 Score=32.63 Aligned_cols=44 Identities=25% Similarity=0.391 Sum_probs=29.7
Q ss_pred CCCCcEEEEeCC-CHHHHHHHhccCcc----------cccccceEEEEeCCEEEEEe
Q 014947 4 RIPKDFDIITSA-ELKEVVRVFSQCEI----------VGKRFPICHVHFENTIVEVS 49 (415)
Q Consensus 4 ~~pkD~DIaT~a-~peev~~~f~~~~~----------vG~~f~i~~v~~~g~~iEVs 49 (415)
-.|+|+||-|+- +.+++.++|..... +-+.| .+..++|..|||.
T Consensus 35 ~~p~DIDI~~D~~d~e~i~~il~~~~~~~~~~~~~~~~ts~F--~e~~I~gv~Vdvm 89 (156)
T cd07749 35 VEPHDIDIQTDNEGAYEIERIFHEFVNTEVRFSESEGIRSHF--GELQIDGIKVEIM 89 (156)
T ss_pred CCCCcceEEEchhhHHHHHHHHHHhccCCCccCCCCceeeee--eEEEECCEEEEEe
Confidence 469999999984 67888888865321 11122 2345688888887
No 26
>PF13735 tRNA_NucTran2_2: tRNA nucleotidyltransferase domain 2 putative; PDB: 1MIY_A 1MIV_B 1MIW_B.
Probab=55.72 E-value=23 Score=31.08 Aligned_cols=110 Identities=15% Similarity=0.141 Sum_probs=60.3
Q ss_pred hHHHHHHHHHHHhcCCCChhHHHHHHHHHhcchhHHHHHHHhhhhhcccc-chhhhhcCCCCCcHHHHHHHHHHHHHHHH
Q 014947 244 LWIAILAFHKALSDQPRDPLVVAVFSLAVYNGGDMLEAVKIARRINKSHD-ESFCELLEPRDLDFEALKHEVMDFAESSK 322 (415)
Q Consensus 244 ~W~~~l~~~~~l~~~~~~~~~~~a~~la~~~~~~~~~~v~~~~r~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~a~~v~ 322 (415)
.|..++.+ +.. ++.....++..|+.+++..+.+...-+...... ..+. ...-++.+.+....+..+.
T Consensus 9 ~wa~l~~~---~~~---~~~~a~~~L~~lk~Sn~~i~~v~~l~~~~~~~~~~~~~------~~~l~~~~~~~~~~~~~l~ 76 (149)
T PF13735_consen 9 AWALLLLL---LGL---DPEEAREILKRLKFSNKEIKRVLSLVELHMRLQSQPWS------RRDLYRYGEELFEDALRLA 76 (149)
T ss_dssp HHHHHHHH---TT------S-HHHHHHHTT--HHHHHHHHHHHHHHHH--GGG--------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---hcc---HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhccCCch------HHHHHHHhHHHHHHHHHHH
Confidence 57655444 222 233456888888888776666544322222211 0110 1112688899999999999
Q ss_pred HHhcccCcHHHHHHHhccCCCCCCCceEE----eehhhhhhhhhhhH
Q 014947 323 GALSKMTDEYFVSQAMAGYSRAPFSDLVF----IPLALYLKASKIFE 365 (415)
Q Consensus 323 ~a~~~~~~~~~~~~~~~~~~~~~~s~l~~----~~~~~~~~~~~~f~ 365 (415)
.+.....+...+.+.|...|-.+.++|-+ +-...+++|||.+.
T Consensus 77 ~a~~~~~~~~~~~~~~~~l~i~~~~~LaI~G~DLi~~lg~~pGp~iG 123 (149)
T PF13735_consen 77 QALGKAENRERLKEIYDQLPIHSLKDLAINGNDLIEALGIKPGPWIG 123 (149)
T ss_dssp HHHHS-HHHHHHHHHHTTSS-SSGGG-SS-HHHHHHHHT--SSCHHH
T ss_pred HHhcchhhHHHHHHHHHcCCCCCcccCCcCHHHHHHHcCCCCCcHHH
Confidence 99887767788888888777777777744 21113677888773
No 27
>PF12626 PolyA_pol_arg_C: Polymerase A arginine-rich C-terminus; PDB: 3AQN_A 3AQK_A 3AQM_B 3AQL_B.
Probab=32.99 E-value=62 Score=28.41 Aligned_cols=68 Identities=13% Similarity=0.120 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcc-hhHHHHHHHhhhhhccccchh---hhhcCCCCCcH--------HHHHHHHHHHHHHHHHHhcccCcH
Q 014947 264 VVAVFSLAVYNG-GDMLEAVKIARRINKSHDESF---CELLEPRDLDF--------EALKHEVMDFAESSKGALSKMTDE 331 (415)
Q Consensus 264 ~~~a~~la~~~~-~~~~~~v~~~~r~~~~~~~~~---~~l~~~~~~~~--------~~~~~~~~~~a~~v~~a~~~~~~~ 331 (415)
...++..|+..+ .++...++||+||+.+.-..| +.+....+-.. .+.+=+++.|.+.+.....++.+|
T Consensus 7 ~~~A~~~A~~~vl~~q~~~vaIPrRfs~~mReIW~lQ~Rl~~r~gkr~~~ll~hprFRAAyDFL~LR~~~ge~~~~l~~W 86 (124)
T PF12626_consen 7 PQPALQQAMNEVLDEQVQRVAIPRRFSAPMREIWQLQPRLEKRQGKRAFRLLEHPRFRAAYDFLLLRAEAGEELSELAEW 86 (124)
T ss_dssp HHHHHHHHHHHHHHHHHHHS---HHHHHHHHHHHHHHHHTTS--STTHHHHHHSTTHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhhHhccchHhHhHHHHHHHHHHHhcccCCCCHHHHHhCchHHHHHHHHHHHHHhCCCcHHHHHH
No 28
>cd05402 NT_PAP_TUTase Nucleotidyltransferase (NT) domain of poly(A) polymerases and terminal uridylyl transferases. Poly(A) polymerases (PAPs) catalyze mRNA poly(A) tail synthesis, and terminal uridylyl transferases (TUTases) uridylate RNA. PAPs in this subgroup include human PAP alpha, mouse testis-specific cytoplasmic PAP beta, human nuclear PAP gamma, Saccharomyces cerevisiae PAP1, TRF4 and-5, Schizosaccharomyces pombe caffeine-induced death proteins -1, and -14, Caenorhabditis elegans Germ Line Development-2, and Chlamydomonas reinhardtii MUT68. This family also includes human U6 snRNA-specific TUTase1, and Trypanosoma brucei 3'-TUTase-1,-2, and 4. This family belongs to the Pol beta-like NT superfamily. In the majority of enzymes in this superfamily, two carboxylates, Dx[D/E], together with a third more distal carboxylate, coordinate two divalent metal cations involved in a two-metal ion mechanism of nucleotide addition. For the majority of proteins in this family, these carboxyla
Probab=31.41 E-value=1.4e+02 Score=24.78 Aligned_cols=48 Identities=17% Similarity=0.245 Sum_probs=31.5
Q ss_pred CCCCCcEEEEeCCCH-----H----HHHHHhccCc-------ccccccceEEEEeC--CEEEEEec
Q 014947 3 NRIPKDFDIITSAEL-----K----EVVRVFSQCE-------IVGKRFPICHVHFE--NTIVEVSS 50 (415)
Q Consensus 3 g~~pkD~DIaT~a~p-----e----ev~~~f~~~~-------~vG~~f~i~~v~~~--g~~iEVst 50 (415)
+.+-.|+|++...+. . ++.+.+.+.. +.+.+.|++++... |..+||+-
T Consensus 33 ~~~~SDiDl~i~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~i~~ArVPiik~~~~~~~i~~Dis~ 98 (114)
T cd05402 33 GLPGSDIDLCLLGPNHRVDREDFLRKLAKLLKKSGEVVEVEPIINARVPIIKFVDKPTGIEVDISF 98 (114)
T ss_pred CCCCCCeeEEEEeCCCCccHHHHHHHHHHHHHhCCCceeeEEeccCCCCEEEEEEcCCCeEEEEEc
Confidence 456789999876542 2 2333343322 45678899998887 88888873
No 29
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=22.47 E-value=3.1e+02 Score=24.96 Aligned_cols=72 Identities=13% Similarity=0.117 Sum_probs=50.1
Q ss_pred hhhchhhHHHHHHHHHHhCCCCCHHHHHHHhhhhhhhcCCCHHHHHHHHHHHH---hCCCHHHHHHHHHHcCCchhh
Q 014947 127 FQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYML---AYGSAEASLRLLWKFGLLEVL 200 (415)
Q Consensus 127 f~eDPlRiLRa~RFaa~lgf~i~~~T~~~i~~~~~~l~~vs~eRi~~El~kll---~~~~~~~~l~~l~~~gll~~l 200 (415)
+.++.+. ++..+...-|..+.+.=..-+.-....=..+|++.|..++.+.. +-..-.+.|.+|.+.|++..+
T Consensus 5 ~~~~~~~--~~~~~L~~~GlR~T~qR~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~~~ 79 (169)
T PRK11639 5 TTQELLA--QAEKLCAQRNVRLTPQRLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVHKV 79 (169)
T ss_pred cHHHHHH--HHHHHHHHcCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEEEE
Confidence 3444433 33344556699888876665554444435789999999998874 233457899999999999887
Done!