Query 014947
Match_columns 415
No_of_seqs 360 out of 1776
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 03:58:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014947.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014947hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3aql_A Poly(A) polymerase; tra 100.0 1.9E-51 6.4E-56 422.4 21.0 306 1-316 46-385 (415)
2 1miw_A TRNA CCA-adding enzyme; 100.0 5.2E-48 1.8E-52 395.7 22.0 332 1-377 33-383 (404)
3 3h38_A TRNA nucleotidyl transf 100.0 1.6E-47 5.4E-52 395.6 21.4 191 1-205 48-251 (441)
4 1ou5_A TRNA CCA-adding enzyme, 100.0 5.2E-46 1.8E-50 385.3 15.2 192 1-206 84-288 (448)
5 1vfg_A A-adding enzyme, poly A 100.0 2.2E-45 7.6E-50 374.5 19.0 194 1-205 24-226 (390)
6 2fcl_A Hypothetical protein TM 21.0 1.2E+02 0.0041 26.5 5.1 47 4-50 51-106 (169)
7 1qgp_A Protein (double strande 19.7 25 0.00085 26.8 0.2 59 140-200 2-64 (77)
8 4ets_A Ferric uptake regulatio 11.4 2.4E+02 0.0083 24.1 4.5 66 136-201 19-89 (162)
9 4ekf_A Adenain; alpha and beta 10.5 1.2E+02 0.004 27.7 2.0 16 92-107 57-74 (204)
10 1m1e_B ICAT; cell adhesion, cy 9.9 2E+02 0.0069 22.5 2.9 36 123-161 11-46 (81)
No 1
>3aql_A Poly(A) polymerase; transferase/RNA, ATP-binding, nucleotide-binding, RNA-bindin transferase, nucleotidyltransferase, ATP binding, A-phospho; 3.00A {Escherichia coli} PDB: 3aqn_A* 3aqk_A 3aqm_A
Probab=100.00 E-value=1.9e-51 Score=422.39 Aligned_cols=306 Identities=27% Similarity=0.427 Sum_probs=231.7
Q ss_pred CCCCCCCcEEEEeCCCHHHHHHHhccCcccccccceEEEEeCCEEEEEeccccccccc--ccc---cccccc----CcCC
Q 014947 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRF--SRD---FKYEFE----RPIG 71 (415)
Q Consensus 1 LLg~~pkD~DIaT~a~peev~~~f~~~~~vG~~f~i~~v~~~g~~iEVstfR~~~~~~--~~~---~~~~~~----~p~g 71 (415)
|||++|+|+||+|+|+|++++++|+++..+|++|++++|.+++..+||+|||++.+.. ... +..+.+ ...+
T Consensus 46 LLg~~~~D~Di~t~a~p~~~~~~f~~~~~~g~~f~~~~v~~~~~~~ev~t~R~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 125 (415)
T 3aql_A 46 LLGKKPKDFDVTTNATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFG 125 (415)
T ss_dssp HHSSCCSCCEEEESSCHHHHHHHTTTSCCCCCSSSCCEEESSSCEEEEEECCC-----------------------CCCC
T ss_pred HcCCCCCCEEEEcCCCHHHHHHHhhhCeEecccCCEEEEEECCcEEEEeeecccccccccccccccccCCCcccccccCC
Confidence 5899999999999999999999999998999999999999999999999999875421 000 000111 1357
Q ss_pred CchHhhhhhhhhccCCccccceeecCCCCeEecccCcHHHHccCceeecCCcccchhhchhhHHHHHHHHHHhCCCCCHH
Q 014947 72 CDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRE 151 (415)
Q Consensus 72 ~~eeDl~r~~da~RRDFTINAla~~~~~~~i~D~~gG~~DL~~~~iR~v~~p~~~f~eDPlRiLRa~RFaa~lgf~i~~~ 151 (415)
++++|+ .||||||||||||+.++.|+|||||++||++|+||++++|..+|.|||+|||||+|||+++||.|+++
T Consensus 126 tl~eDl------~RRDFTINAla~~~~~~~l~D~~gG~~DL~~~~Ir~v~~p~~~F~eDPlRiLRa~Rfaarlgf~i~~~ 199 (415)
T 3aql_A 126 SIEEDA------QRRDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLGMRISPE 199 (415)
T ss_dssp CHHHHH------TTSSBSGGGCEEETTTCCEECSSSHHHHHHHTEECBSSCHHHHHHHCTHHHHHHHHHHHHTTCEECHH
T ss_pred CHHHHH------hcCCccceeEEEeCCCCeeeCCCCCHHHHhCCeEEecCChhhhhhhCHHHHHHHHHHHHHhCCCCCHH
Confidence 889999 69999999999999888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhhcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHcCCchhhchhhHHHHhhcCCccCchhHHHHHHHHHHHH
Q 014947 152 TAHFVKHLSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLD 231 (415)
Q Consensus 152 T~~~i~~~~~~l~~vs~eRi~~El~kll~~~~~~~~l~~l~~~gll~~l~P~~~~~~~~~~~~~~~~~~~~l~~~l~~ld 231 (415)
|.++|++++.+|..+|.||++.|+.|||.++++..++++|.++|+|..+||++..+..+.+..| ..++..|++.++|
T Consensus 200 T~~ai~~~~~~l~~is~eRi~~E~~kiL~~~~~~~~l~~l~~~GlL~~~lPe~~~i~~~~q~~h---~~~v~~h~L~~~d 276 (415)
T 3aql_A 200 TAEPIPRLATLLNDIPPAHLFEESLKLLQAGYGYETYKLLCEYHLFQPLFPTITRYFTENGDSP---MERIIEQVLKNTD 276 (415)
T ss_dssp HHTHHHHHGGGGGGSCHHHHHHHHHHHHTSSCHHHHHHHHHHTTCSTTTCHHHHTTCCSSSCCH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhcCChHHHHHHHHHHHcCCCHHHHHHHHHHcCChHHhchhHHHHhccCCcch---HHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999987754433222 2456778888999
Q ss_pred hhhCCCCCCCcchHHHHHHHHHHHh-------cCCCChh----------HHHHHHHHHh----cchhHHHHHHHhhhhhc
Q 014947 232 KLLAPDRPCHSSLWIAILAFHKALS-------DQPRDPL----------VVAVFSLAVY----NGGDMLEAVKIARRINK 290 (415)
Q Consensus 232 ~~~~~~~~~~~~~W~~~l~~~~~l~-------~~~~~~~----------~~~a~~la~~----~~~~~~~~v~~~~r~~~ 290 (415)
+.+..+.+..+.+.++.| +|..+. ...+.+. ....++..+. ......+.|....|+.+
T Consensus 277 ~~i~~~~~~~~~L~lAAL-LH~di~K~~~~~~~~~G~~~~~~h~~~ga~~a~~~~~rl~l~~r~~~~v~~lv~lq~rL~~ 355 (415)
T 3aql_A 277 TRIHNDMRVNPAFLFAAM-FWYPLLETAQKIAQESGLTYHDAFALAMNDVLDEACRSLAIPKRLTTLTRDIWQLQLRMSR 355 (415)
T ss_dssp HHHHTTCCCCHHHHHHHH-THHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTTS
T ss_pred HHHhcCCCCCHHHHHhHh-cCcchhhhhhhhhhccCCCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhh
Confidence 887766665544333333 231111 1101110 0011111111 11335566778888888
Q ss_pred cccchhhhhcCCCCCc----HHHHHHHHHH
Q 014947 291 SHDESFCELLEPRDLD----FEALKHEVMD 316 (415)
Q Consensus 291 ~~~~~~~~l~~~~~~~----~~~~~~~~~~ 316 (415)
..+....++++...+- ...++.++.+
T Consensus 356 ~~~~~~~~l~~~~~f~~~~d~l~~r~~~~~ 385 (415)
T 3aql_A 356 RQGKRAWKLLEHPKFRAAYDLLALRAEVER 385 (415)
T ss_dssp CCCTTHHHHHHCTTHHHHHHHHHHHHHHTT
T ss_pred ccCcCHHHHHhChHHHHHHHHHHHHHhhCC
Confidence 8777788787766332 2345555543
No 2
>1miw_A TRNA CCA-adding enzyme; tRNA nucleotidyltransferase, translation, transferase; HET: ATP; 3.00A {Geobacillus stearothermophilus} SCOP: a.173.1.1 d.218.1.4 PDB: 1miv_A* 1miy_A*
Probab=100.00 E-value=5.2e-48 Score=395.68 Aligned_cols=332 Identities=24% Similarity=0.256 Sum_probs=230.6
Q ss_pred CCCCCCCcEEEEeCCCHHHHHHHhccCcccccccceEEEEeCCEEEEEeccccccccccccccccccCcC-----CCchH
Q 014947 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSRDFKYEFERPI-----GCDEK 75 (415)
Q Consensus 1 LLg~~pkD~DIaT~a~peev~~~f~~~~~vG~~f~i~~v~~~g~~iEVstfR~~~~~~~~~~~~~~~~p~-----g~~ee 75 (415)
|||++|+|+||+|++.|++++++|+++..+|++||+++|..+|..+||||||++.++. +.++|. +++++
T Consensus 33 lLg~~~~D~Di~~~~~~~~~~~~~~~~~~~g~~~gt~~v~~~~~~~ev~t~R~e~~~~------~~~~p~~v~~~~~l~~ 106 (404)
T 1miw_A 33 LLGRPIGDVDIATSALPEDVMAIFPKTIDVGSKHGTVVVVHKGKAYEVTTFKTDGDYE------DYRRPESVTFVRSLEE 106 (404)
T ss_dssp HHTCCCCCCEEEESSCHHHHHHHCSSEEEEEGGGTEEEEEETTEEEEEEECEECC---------------CCEECSCHHH
T ss_pred HcCCCCCCEEEEeCCCHHHHHHHhhhhcccCcCCCeEEEEECCeEEEEeeecccCCCC------CCcCCcccccCCcHHH
Confidence 5899999999999999999999998877889999999999999999999999976543 234442 67799
Q ss_pred hhhhhhhhccCCccccceeecCCCCeEecccCcHHHHccCceeecCCcccchhhchhhHHHHHHHHHHhCCCCCHHHHHH
Q 014947 76 DFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHF 155 (415)
Q Consensus 76 Dl~r~~da~RRDFTINAla~~~~~~~i~D~~gG~~DL~~~~iR~v~~p~~~f~eDPlRiLRa~RFaa~lgf~i~~~T~~~ 155 (415)
|+ .|||||||||||++. +.|+|||||++||++|+||++++|..+|.|||+|||||+|||++|||.|+++|.++
T Consensus 107 Dl------~RRDfTiNAla~~~~-g~l~D~~~G~~Dl~~~~ir~~~~p~~~f~eDPlRiLRa~Rfaa~lgf~i~~~T~~a 179 (404)
T 1miw_A 107 DL------KRRDFTMNAIAMDEY-GTIIDPFGGREAIRRRIIRTVGEAEKRFREDALRMMRAVRFVSELGFALAPDTEQA 179 (404)
T ss_dssp HH------HTSSBSGGGCEECTT-CCEECTTCHHHHHHHTEECBSSCHHHHHHHCTHHHHHHHHHHHHHCCEECHHHHHH
T ss_pred HH------HhCCCCcchheeCCC-CCEeCCCCCHHHHhCCeeeecCChHhhHHhhHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 99 699999999999984 55889999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhhcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHcCCchhhchhhHHHHhhcCCccCchhHHHHHHHHHHHHhhhC
Q 014947 156 VKHLSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLA 235 (415)
Q Consensus 156 i~~~~~~l~~vs~eRi~~El~kll~~~~~~~~l~~l~~~gll~~l~P~~~~~~~~~~~~~~~~~~~~l~~~l~~ld~~~~ 235 (415)
|+++++.|..+|.|||+.|+.|||.++++..+++.|.++|++.. +|++.... +.+ +.+..++...
T Consensus 180 i~~~~~~l~~is~eRi~~El~kiL~~~~~~~~l~~l~~~Gll~~-lPe~~~~~------------~~~-~~l~~~~~~~- 244 (404)
T 1miw_A 180 IVQNAPLLAHISVERMTMEMEKLLGGPFAARALPLLAETGLNAY-LPGLAGKE------------KQL-RLAAAYRWPW- 244 (404)
T ss_dssp HHHHGGGGGGSCHHHHHHHHHHHHTSSSHHHHHHHHHHSTTTTS-STTCSSCH------------HHH-HHGGGSCGGG-
T ss_pred HHHHHhhhccCCHHHHHHHHHHHHcCCCHHHHHHHHHHhcchhh-CcchhhHH------------HHH-HHHHHHhccc-
Confidence 99999999999999999999999999999999999999999998 59865310 111 1111111110
Q ss_pred CCCCCCcchHHHHHHHHHHHhcCCCChhHHHHHHHHHhcchhHHHHHHHhhhhhccccchhhhhcCCCCCcHHHHHHHHH
Q 014947 236 PDRPCHSSLWIAILAFHKALSDQPRDPLVVAVFSLAVYNGGDMLEAVKIARRINKSHDESFCELLEPRDLDFEALKHEVM 315 (415)
Q Consensus 236 ~~~~~~~~~W~~~l~~~~~l~~~~~~~~~~~a~~la~~~~~~~~~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 315 (415)
.. .....|.+++ | .+.. . ....++..+..+.+..+.+...-+.-..... .. .......++++.+..
T Consensus 245 ~~--~~~l~~aaLl--h-digk--~---~a~~~l~rLkls~~~~~~v~~Lv~~~~~~~~--~~--~~~~~~l~~~~~~~~ 310 (404)
T 1miw_A 245 LA--AREERWALLC--H-ALGV--Q---ESRPFLRAWKLPNKVVDEAGAILTALADIPR--PE--AWTNEQLFSAGLERA 310 (404)
T ss_dssp CC--SHHHHHHHHH--H-HHTC--S---CHHHHHHHTTCCHHHHHHHHHHHHHHHHCCS--GG--GCCHHHHHHHHHHHH
T ss_pred cC--ChHHHHHHHH--H-hCCH--H---HHHHHHHHcCCCHHHHHHHHHHHHHHHhhcc--cc--cchHHHHHHcCHHHH
Confidence 00 1112455443 2 1211 1 2356677777766655555443322111000 00 001111246667766
Q ss_pred HHHHHHHHH-hcccC--cHHHHHHHhccCCCC-------CCCceEEeehhhhhhhhhhh----HHHhcCccccccc
Q 014947 316 DFAESSKGA-LSKMT--DEYFVSQAMAGYSRA-------PFSDLVFIPLALYLKASKIF----ECVRGGGERRFAS 377 (415)
Q Consensus 316 ~~a~~v~~a-~~~~~--~~~~~~~~~~~~~~~-------~~s~l~~~~~~~~~~~~~~f----~~~~~~~~~~~~~ 377 (415)
..+..+..+ .+... +...+.+.+...+.. .+.||.- ..+++||+.+ +.+...+.++..+
T Consensus 311 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~dL~~---~lG~~pGp~iG~~L~~l~~~~l~g~~~ 383 (404)
T 1miw_A 311 LSVETVRAAFTGAPPGPWHEKLRRRFASLPIKTKGELAVNGKDVIE---WVGKPAGPWVKEALDAIWRAVVNGEVE 383 (404)
T ss_dssp HHHHHHHHHHHCCCSHHHHHHHHHHHTTCSCSSGGGCSSCHHHHHH---HHTCCSSHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHhhhCCccchhHHHHHHHHHHhhhcccCCCCCCHHHHHH---HcCCCCcHHHHHHHHHHHHHHHhCCCC
Confidence 666666555 34333 455566666544332 2233331 1367777777 4444444444443
No 3
>3h38_A TRNA nucleotidyl transferase-related protein; transferase/RNA, nucleotide-binding, RNA-binding; 2.37A {Thermotoga maritima} PDB: 3h37_A 3h39_A* 3h3a_A*
Probab=100.00 E-value=1.6e-47 Score=395.58 Aligned_cols=191 Identities=23% Similarity=0.365 Sum_probs=170.1
Q ss_pred CCCCCCCcEEEEeCCCHHHHHHHhcc----CcccccccceEEEEe-CCEEEEEeccccccccccccccccccCc---CCC
Q 014947 1 MLNRIPKDFDIITSAELKEVVRVFSQ----CEIVGKRFPICHVHF-ENTIVEVSSFSTSGRRFSRDFKYEFERP---IGC 72 (415)
Q Consensus 1 LLg~~pkD~DIaT~a~peev~~~f~~----~~~vG~~f~i~~v~~-~g~~iEVstfR~~~~~~~~~~~~~~~~p---~g~ 72 (415)
|||++|+|+||+|+++|+++.+.+.+ ...+|++|||++|.+ +|..+||||||++.+...+ +.| .++
T Consensus 48 LLg~~~~D~Di~t~~~~~~~~~~~~~~~~~~~~~g~~~gt~~v~~~~g~~~ev~t~R~e~~~~~~------~~p~V~~~~ 121 (441)
T 3h38_A 48 LLGIKNLDIDIVVEGNALEFAEYAKRFLPGKLVKHDKFMTASLFLKGGLRIDIATARLEYYESPA------KLPDVEMST 121 (441)
T ss_dssp HHTCCCCCEEEEESSCHHHHHHHHHTTSCEEEECCSSTTEEEEEETTSCEEEEEECCEECCSSSS------SCCEESCCC
T ss_pred HCCCCCCCeeEEeCCCHHHHHHHHHHHcCCEeccCCcCcEEEEEEeCCeEEEEecccccccCCCC------CCCccCCCC
Confidence 58999999999999999888776643 225699999999998 8899999999998644322 222 367
Q ss_pred chHhhhhhhhhccCCccccceeecCC---CCeEecccCcHHHHccCceeecCCcccchhhchhhHHHHHHHHHHhCCCCC
Q 014947 73 DEKDFIRWRNCLQRDFTINGLMFDPY---AKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFS 149 (415)
Q Consensus 73 ~eeDl~r~~da~RRDFTINAla~~~~---~~~i~D~~gG~~DL~~~~iR~v~~p~~~f~eDPlRiLRa~RFaa~lgf~i~ 149 (415)
+++|+ .|||||||||||++. .|.|+|||||++||++|+||+|++ .+|.|||+|||||+||+++|||+|+
T Consensus 122 l~eDl------~RRDFTINAla~~~~~~~~g~liD~~gG~~DL~~~~iR~v~~--~~F~eDplRiLRa~Rfaa~lgf~i~ 193 (441)
T 3h38_A 122 IKKDL------YRRDFTINAMAIKLNPKDFGLLIDFFGGYRDLKEGVIRVLHT--LSFVDDPTRILRAIRFEQRFDFRIE 193 (441)
T ss_dssp HHHHH------HTSSBGGGSCEEECSGGGTTEEECSSSHHHHHHTTEECBSST--THHHHCTTHHHHHHHHHHHTTCEEC
T ss_pred HHHHH------HhccchhhhhhcccCCCCCCeEeCCCCCHHHHhCCEEEECCC--CChhhCHHHHHHHHHHHHHhCCCCC
Confidence 89999 699999999999875 367999999999999999999987 5899999999999999999999999
Q ss_pred HHHHHHHhhhh--hhhcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHcCCchhhchhhH
Q 014947 150 RETAHFVKHLS--PSILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQA 205 (415)
Q Consensus 150 ~~T~~~i~~~~--~~l~~vs~eRi~~El~kll~~~~~~~~l~~l~~~gll~~l~P~~~ 205 (415)
++|..+|+++. ..+.++|+|||+.|+.|||.++++..++++|.++|++..+||++.
T Consensus 194 ~~t~~~i~~~~~~~~l~~is~eRi~~El~kll~~~~~~~~l~~l~~~glL~~i~Pel~ 251 (441)
T 3h38_A 194 ETTERLLKQAVEEGYLERTTGPRLRQELEKILEEKNPLKSIRRMAQFDVIKHLFPKTY 251 (441)
T ss_dssp HHHHHHHHHHHHTTHHHHSCHHHHHHHHHHHHTSSCHHHHHHHHHHTTHHHHHSTTCC
T ss_pred hHHHHHHHHHHhhchhccCCHHHHHHHHHHHHcCCCHHHHHHHHHHcCChHHhCcccc
Confidence 99999999875 689999999999999999999999999999999999999999875
No 4
>1ou5_A TRNA CCA-adding enzyme, tRNA-nucleotidyltransferase; polymerase, translation; 3.40A {Homo sapiens} SCOP: a.173.1.1 d.218.1.4
Probab=100.00 E-value=5.2e-46 Score=385.35 Aligned_cols=192 Identities=22% Similarity=0.327 Sum_probs=171.2
Q ss_pred CCCCCCCcEEEEeCCCHHHHHHHhccCc----c-cccccceEEEEeCCEEEEEeccccccccccccccccccCc---CC-
Q 014947 1 MLNRIPKDFDIITSAELKEVVRVFSQCE----I-VGKRFPICHVHFENTIVEVSSFSTSGRRFSRDFKYEFERP---IG- 71 (415)
Q Consensus 1 LLg~~pkD~DIaT~a~peev~~~f~~~~----~-vG~~f~i~~v~~~g~~iEVstfR~~~~~~~~~~~~~~~~p---~g- 71 (415)
|||++|+|+||+|+|+|++++++|+++. . +|++|++++|..+|..+||+|||++.+.. .++| .+
T Consensus 84 LLg~~~~D~Di~~~~~p~~~~~~~~~~g~~~~~~~g~~~gt~~v~~~~~~~ev~t~R~~~~~~-------~r~~~v~~~~ 156 (448)
T 1ou5_A 84 LNGVKPQDIDFATTATPTQMKEMFQSAGIRMINNRGEKHGTITARLHEENFEITTLRIDVTTD-------GRHAEVEFTT 156 (448)
T ss_dssp HHTSCCSSCEEEESSCHHHHHHHHTTTTCCBCCCCCTTCCCEEECTTTTCEEEEECCS-------------------SSC
T ss_pred HcCCCCCCEEEEeCCCHHHHHHHHHHcCCccccCcCcccceEEEEECCEEEEEEeeccccccc-------CCCCccccCc
Confidence 5899999999999999999999998642 2 69999999999999999999999875321 1222 23
Q ss_pred CchHhhhhhhhhccCCccccceeecCCCCeEecccCcHHHHccCceeecCCcccchhhchhhHHHHHHHHHHh--CC-CC
Q 014947 72 CDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARL--GF-RF 148 (415)
Q Consensus 72 ~~eeDl~r~~da~RRDFTINAla~~~~~~~i~D~~gG~~DL~~~~iR~v~~p~~~f~eDPlRiLRa~RFaa~l--gf-~i 148 (415)
++++|| .|||||||||||++ ++.|+|||||++||++|+||+|++|+++|.|||+|||||+|||++| || .|
T Consensus 157 ~l~eDl------~RRDFTINAla~~~-~g~l~D~~gG~~DL~~~~IR~v~d~~~rF~EDPLRiLRa~RFaarl~~gf~~I 229 (448)
T 1ou5_A 157 DWQKDA------ERRDLTINSMFLGF-DGTLFDYFNGYEDLKNKKVRFVGHAKQRIQEDYLRILRYFRFYGRIVDKPGDH 229 (448)
T ss_dssp CSSCCG------GGSSBGGGSCEECS-SCBEECSSSHHHHTTTTCCCBSSTTTTTSSSCTTHHHHHHHHHHHSCSSSSCC
T ss_pred cHHHHH------HHcCCChhheeECC-CCCEeCCCCCHHHHhCCeEEecCChHHhhhhCHHHHHHHHHHHHHcCcCCCCc
Confidence 468998 69999999999999 5678999999999999999999999999999999999999999999 96 99
Q ss_pred CHHHHHHHhhhhhhhcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHcCCchhh-chhhHH
Q 014947 149 SRETAHFVKHLSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVL-LPIQAA 206 (415)
Q Consensus 149 ~~~T~~~i~~~~~~l~~vs~eRi~~El~kll~~~~~~~~l~~l~~~gll~~l-~P~~~~ 206 (415)
+++|+++|+++++.|..+|.|||+.|+.|||.++++..+++.|.++|++..+ ||++..
T Consensus 230 ~~~T~~ai~~~~~~L~~is~ERi~~El~kiL~~~~~~~~l~~L~~~GlL~~i~lPe~~~ 288 (448)
T 1ou5_A 230 DPETLEAIAENAKGLAGISGERIWVELKKILVGNHVNHLIHLIYDLDVAPYIGLPANAS 288 (448)
T ss_dssp CHHHHHHHHHSCTTGGGSCSHHHHHHHHHHHTSTTHHHHHHHHHHTTCGGGGTCCCCSC
T ss_pred CHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHcCCCHHHHHHHHHHCCCceEecCcchhh
Confidence 9999999999999999999999999999999999999999999999999999 998753
No 5
>1vfg_A A-adding enzyme, poly A polymerase; transferase, RNA, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: APC; 2.80A {Aquifex aeolicus} SCOP: a.173.1.1 d.218.1.4
Probab=100.00 E-value=2.2e-45 Score=374.52 Aligned_cols=194 Identities=26% Similarity=0.390 Sum_probs=169.8
Q ss_pred CCCCCCCcEEEEeCCCH----HHHHHHhccCcccccccceEEEEeCCEEEEEeccccccccccccccccccCcCCCchHh
Q 014947 1 MLNRIPKDFDIITSAEL----KEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSRDFKYEFERPIGCDEKD 76 (415)
Q Consensus 1 LLg~~pkD~DIaT~a~p----eev~~~f~~~~~vG~~f~i~~v~~~g~~iEVstfR~~~~~~~~~~~~~~~~p~g~~eeD 76 (415)
|||++|+|+||+|++++ +++++.|+....+|++|+|++|.++|..+||||||++.+...+..+. . ..+++++|
T Consensus 24 llg~~~~D~Di~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~v~~~~~~~e~~~~R~e~~~~~~~~p~-v--~~~~l~~D 100 (390)
T 1vfg_A 24 LLGKEVWDVDFVVEGNAIELAKELARRHGVNVHPFPEFGTAHLKIGKLKLEFATARRETYPRPGAYPK-V--EPASLKED 100 (390)
T ss_dssp HTTCCCSEEEEEESSCHHHHHHHHHHHHTCCCEEETTTTEEEEEETTEEEEEEECCSCC----------C--CCCCHHHH
T ss_pred HcCCCCCCEEEEEeCChHHHHHHHHHHcCCceeecCCCcEEEEEECCEEEEEeccCcccCCCCCCCCc-c--CCCCHHHH
Confidence 68999999999999985 67788887666689999999999999999999999986543221110 1 13577999
Q ss_pred hhhhhhhccCCccccceeecCCC---CeEecccCcHHHHccCceeecCCcccchhhchhhHHHHHHHHHHhCCCCCHHHH
Q 014947 77 FIRWRNCLQRDFTINGLMFDPYA---KIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETA 153 (415)
Q Consensus 77 l~r~~da~RRDFTINAla~~~~~---~~i~D~~gG~~DL~~~~iR~v~~p~~~f~eDPlRiLRa~RFaa~lgf~i~~~T~ 153 (415)
+ .|||||||||||+... +.|+|||||++||++|+||++++ .+|.|||+|||||+||+++|||.|+++|.
T Consensus 101 l------~RRDfTiNAla~~~~~~~~g~l~D~~~G~~DL~~~~ir~v~~--~~F~eDPlRiLRa~Rfaa~~gf~i~~~T~ 172 (390)
T 1vfg_A 101 L------IRRDFTINAMAISVNLEDYGTLIDYFGGLRDLKDKVIRVLHP--VSFIEDPVRILRALRFAGRLNFKLSRSTE 172 (390)
T ss_dssp H------HTSSBGGGSCEEECCGGGTTCEECSSCHHHHHHTTEECBSST--THHHHCTTHHHHHHHHHHHHTCEECHHHH
T ss_pred H------hhCCCchhheeecccCCCCCeEEeCCCCHHHHhCCeeEeCCc--cchhhCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 9 6999999999998752 57899999999999999999987 69999999999999999999999999999
Q ss_pred HHHhhhhh--hhcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHcCCchhhchhhH
Q 014947 154 HFVKHLSP--SILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQA 205 (415)
Q Consensus 154 ~~i~~~~~--~l~~vs~eRi~~El~kll~~~~~~~~l~~l~~~gll~~l~P~~~ 205 (415)
++|+++++ .+..+|.||++.|+.|+|.++++..+++.|.++|+|..+||++.
T Consensus 173 ~~i~~~~~~~~l~~~s~eRi~~El~kiL~~~~~~~~l~~l~~~glL~~~lPe~~ 226 (390)
T 1vfg_A 173 KLLKQAVNLGLLKEAPRGRLINEIKLALREDRFLEILELYRKYRVLEEIIEGFQ 226 (390)
T ss_dssp HHHHHHHHTTGGGTSCHHHHHHHHHHHHHCSSHHHHHHHHHHTTCHHHHSTTCC
T ss_pred HHHHHHhhhhhhhccCHHHHHHHHHHHHcCCCHHHHHHHHHHcCCHHHHhHhhh
Confidence 99999865 89999999999999999999999999999999999999999875
No 6
>2fcl_A Hypothetical protein TM1012; putative nucleotidyltransferase, structural genomics, joint for structural genomics, JCSG; HET: MLY; 1.20A {Thermotoga maritima} SCOP: d.218.1.11 PDB: 2ewr_A
Probab=21.05 E-value=1.2e+02 Score=26.50 Aligned_cols=47 Identities=21% Similarity=0.232 Sum_probs=27.3
Q ss_pred CCCCcEEEEeCC-CHHHHHHHhccCcc-----cccccc---eEEEEeCCEEEEEec
Q 014947 4 RIPKDFDIITSA-ELKEVVRVFSQCEI-----VGKRFP---ICHVHFENTIVEVSS 50 (415)
Q Consensus 4 ~~pkD~DIaT~a-~peev~~~f~~~~~-----vG~~f~---i~~v~~~g~~iEVst 50 (415)
+.|+|+||.++. +.+.+.+.|..... .+..+- ..+...++..||+.+
T Consensus 51 ~~~~DIDi~i~~~da~~~~~~L~~~g~~~~~~~~~~~~~~~f~~~~i~~v~VDlm~ 106 (169)
T 2fcl_A 51 VEVHDIDIQTDEEGAYEIERIFSEFVSXXVRFSSTEXICSHFGELIIDGIXVEIMG 106 (169)
T ss_dssp CCCCSEEEEECHHHHHHHHHHTGGGEEEEEEEEECSSEEEEEEEEEETTEEEEEEE
T ss_pred CCCCccEEEecccCHHHHHHHHHHHhhcccCCCccccccceeeEEeeCCEEEEeee
Confidence 579999999975 35566666654321 111111 122345788888873
No 7
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=19.72 E-value=25 Score=26.78 Aligned_cols=59 Identities=10% Similarity=0.051 Sum_probs=34.7
Q ss_pred HHHHhC-CCCCHHHHHHHhhhhhhhc---CCCHHHHHHHHHHHHhCCCHHHHHHHHHHcCCchhh
Q 014947 140 IAARLG-FRFSRETAHFVKHLSPSIL---KLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVL 200 (415)
Q Consensus 140 Faa~lg-f~i~~~T~~~i~~~~~~l~---~vs~eRi~~El~kll~~~~~~~~l~~l~~~gll~~l 200 (415)
|+..|+ |.+.+++...|-....... .++...|..++. +........|..|.+.|++...
T Consensus 2 ~~~~~~~~~~~~~~~~~IL~~L~~~~~~~~~t~~eLA~~Lg--vs~~tV~~~L~~L~~~G~I~~~ 64 (77)
T 1qgp_A 2 LSSHFQELSIYQDQEQRILKFLEELGEGKATTAHDLSGKLG--TPKKEINRVLYSLAKKGKLQKE 64 (77)
T ss_dssp CHHHHTCTHHHHHHHHHHHHHHHHHCSSSCEEHHHHHHHHC--CCHHHHHHHHHHHHHHTSEEEE
T ss_pred hhHhhcccCCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHC--cCHHHHHHHHHHHHHCCCEEec
Confidence 566777 8888877666654444444 455555555543 1222335567778888877543
No 8
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=11.44 E-value=2.4e+02 Score=24.06 Aligned_cols=66 Identities=18% Similarity=0.221 Sum_probs=45.8
Q ss_pred HHHHHHHHhCCCCCHHHHHHHhhhhhhhcCCCHHHHHHHHHHH--Hh---CCCHHHHHHHHHHcCCchhhc
Q 014947 136 RAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYM--LA---YGSAEASLRLLWKFGLLEVLL 201 (415)
Q Consensus 136 Ra~RFaa~lgf~i~~~T~~~i~~~~~~l~~vs~eRi~~El~kl--l~---~~~~~~~l~~l~~~gll~~l~ 201 (415)
++-.+..+-|+.+.+.=...+......=..++++.|..++.+- .. -..-.+.|+.|.+.|++..+-
T Consensus 19 ~~~~~L~~~g~r~T~qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~~i~ 89 (162)
T 4ets_A 19 RFKKILRQGGLKYTKQREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVTSIS 89 (162)
T ss_dssp HHHHHHHHHTCCCCHHHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEEECC
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 3444566679999887555444333322568999999999876 22 223468899999999998873
No 9
>4ekf_A Adenain; alpha and beta protein (A+B), hydrolase; HET: CSD; 0.98A {Human adenovirus 2} PDB: 1nln_A 1avp_A
Probab=10.52 E-value=1.2e+02 Score=27.69 Aligned_cols=16 Identities=19% Similarity=0.671 Sum_probs=13.3
Q ss_pred ceeecCCCCe--EecccC
Q 014947 92 GLMFDPYAKI--IYDYIG 107 (415)
Q Consensus 92 Ala~~~~~~~--i~D~~g 107 (415)
|||+||.+.. +.||||
T Consensus 57 A~Aw~P~s~~~YmFDPfG 74 (204)
T 4ekf_A 57 AFAWNPRSKTCYLFEPFG 74 (204)
T ss_dssp EEEEETTTTEEEEECTBT
T ss_pred EeEecCCcceEEEeCCCC
Confidence 7899998875 669998
No 10
>1m1e_B ICAT; cell adhesion, cytoskeleton, armadillo repeats, transciption factor, structural protein; 2.10A {Homo sapiens} SCOP: a.161.1.1 PDB: 1luj_B 1t08_B
Probab=9.90 E-value=2e+02 Score=22.47 Aligned_cols=36 Identities=14% Similarity=0.392 Sum_probs=31.1
Q ss_pred cccchhhchhhHHHHHHHHHHhCCCCCHHHHHHHhhhhh
Q 014947 123 ASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSP 161 (415)
Q Consensus 123 p~~~f~eDPlRiLRa~RFaa~lgf~i~~~T~~~i~~~~~ 161 (415)
+.+.|.+--+.||-|+| +||..++|+=.+.+..++.
T Consensus 11 s~e~y~~QkvEILtALk---KLGe~Ls~eE~~FL~~~~~ 46 (81)
T 1m1e_B 11 PEEMYIQQKVRVLLMLR---KMGSNLTASEEEFLRTYAG 46 (81)
T ss_dssp HHHHHHHHHHHHHHHHH---HTTCCCCHHHHHHHHHTHH
T ss_pred cHHHHHHHHHHHHHHHH---HhcccCCHHHHHHHHHHhh
Confidence 44678888899999998 9999999999999988764
Done!