BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014951
(415 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Methylmalonyl-Coa And Amp Bound
pdb|3NYR|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Malonyl-Coa And Amp Bound
Length = 505
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 100/351 (28%), Positives = 141/351 (40%), Gaps = 82/351 (23%)
Query: 89 NVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPK----------------------KK 126
N S K+ A L S S L L D ELPP
Sbjct: 99 NPKSGDKELAHILSDSAPS----LVLAPPDAELPPALGALERVDVDVRARGAVPEDGADD 154
Query: 127 TNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIY 186
+ + ++YTSGTTG PKG V+ +A+ + ++ + TG ED LPL H++
Sbjct: 155 GDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTG-----EDVLVQGLPLFHVH 209
Query: 187 DQIIET-HCIHKGCSIGFWRGDVRYLMEDI-QELK--PTMFSGVPRVYDRIYTGISNKIS 242
++ + +G S+ R R+ E +EL TM GVP +Y RI + +
Sbjct: 210 GLVLGILGPLRRGGSV---RHLGRFSTEGAARELNDGATMLFGVPTMYHRI----AETLP 262
Query: 243 SGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPL 302
+ L+K L G RL ++SG+A L
Sbjct: 263 ADPELAKALA------------------------------------GARL--LVSGSAAL 284
Query: 303 PIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEM 362
P+H E + +G + + YG+TE+ AD GTVGVP+ VE RL
Sbjct: 285 PVHDHERIAAATGRRVIERYGMTETLMNTSVR-ADGEPRAGTVGVPLPGVELRLVEEDGT 343
Query: 363 GYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIV-DGWFHTGDIGEWQP 412
AL GEI +RG LF+ Y RPD T DG+F TGD+ P
Sbjct: 344 PIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDP 394
>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1ULT|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
Length = 541
Score = 75.1 bits (183), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 102/429 (23%), Positives = 163/429 (37%), Gaps = 87/429 (20%)
Query: 1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIA 60
+R+ GV GDR G N + A A L + +I+NHAE +
Sbjct: 64 LRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVL 123
Query: 61 FVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCE 120
N +P + + LKT+ F + + ++EE L
Sbjct: 124 LFDPNLLPLVEAIRGE----LKTVQHFVVMDEKAPE-------GYLAYEEALGEEADPVR 172
Query: 121 LPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFL 180
+P + ++ YT+GTTG PKGVV +++A+V L+ +V G SE+D +
Sbjct: 173 VPERAACGMA---YTTGTTGLPKGVVYSHRALVLHSLAAS---LVDGTALSEKDVVLPVV 226
Query: 181 PLAHIYDQIIETHCIHKGCS--IGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGIS 238
P+ H+ + G + R D L+E T +GVP V + ++
Sbjct: 227 PMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTV----WLALA 282
Query: 239 NKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSG 298
+ + S G ++L +++ + AAP SL+ R + M
Sbjct: 283 DYLESTG------------HRLKTLRRLVVGGSAAP--RSLI---------ARFERM--- 316
Query: 299 AAPLPIHVEEFLRVTSGAPLTQGYGLTES--------CSGCFTSLA--DVFNMIGTVGVP 348
G + QGYGLTE+ SL+ + + G+P
Sbjct: 317 ----------------GVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLP 360
Query: 349 MTTVEARLESVPEMGYDALSSVPR-----GEICLRGNTLFSGYYKRPDLTEEVIV-DGWF 402
+ V RL E G VP+ GE+ L+G + GYY + T + DG+F
Sbjct: 361 IPLV--RLRVADEEG----RPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFF 414
Query: 403 HTGDIGEWQ 411
TGDI W
Sbjct: 415 RTGDIAVWD 423
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 71.6 bits (174), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 106/421 (25%), Positives = 162/421 (38%), Gaps = 88/421 (20%)
Query: 5 GVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQE 64
GVN D + NCPE++++ A + + T A A AE++
Sbjct: 109 GVNQNDVVMLLLPNCPEFVLSFLAASFRGAT---------ATAANPFFTPAEIAKQAKAS 159
Query: 65 NKIPSILSCLPRCCLYLKTIVSFAN-----VSSSQKKEAEELGVSCFSWEEFLQLGTLDC 119
N I Y+ I N + E+ + C + E Q T
Sbjct: 160 NTKLIITEAR-----YVDKIKPLQNDDGVVIVCIDDNESVPIPEGCLRFTELTQSTTEAS 214
Query: 120 ELPPK---KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGK----VCSE 172
E+ ++ + Y+SGTTG PKGV+LT++ +V SV Q V G+
Sbjct: 215 EVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVT---SVAQQ--VDGENPNLYFHS 269
Query: 173 EDTYFSFLPLAHIYDQIIETHC-IHKGCSIGFW-RGDVRYLMEDIQELKPTMFSGVPRVY 230
+D LP+ HIY C + G +I + ++ L+E IQ K T+ VP
Sbjct: 270 DDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVP--- 326
Query: 231 DRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFG- 289
P++ ++ S E +
Sbjct: 327 -------------------------------------------PIVLAIAKSSETEKYDL 343
Query: 290 GRLQAMLSGAAPLPIHVEEFLRVT-SGAPLTQGYGLTESCSGCFTSLA---DVFNMI-GT 344
++ + SGAAPL +E+ + A L QGYG+TE+ SL + F + G
Sbjct: 344 SSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGA 403
Query: 345 VGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFH 403
G + E ++ P+ G D+LS GEIC+RG+ + GY P T E I DGW H
Sbjct: 404 CGTVVRNAEMKIVD-PDTG-DSLSRNQPGEICIRGHQIMKGYLNNPAATAETIDKDGWLH 461
Query: 404 T 404
T
Sbjct: 462 T 462
>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
pdb|4G37|B Chain B, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
Length = 555
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 95/442 (21%), Positives = 162/442 (36%), Gaps = 106/442 (23%)
Query: 1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIA 60
M+ G+N R + N ++ + + + P D + +N ++ ++
Sbjct: 72 MKRYGLNTNHRIVVSSENSLQFFMPVLGALFIGVAVAPANDCYNERELLNSMNISQPTVV 131
Query: 61 FVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGT-LDC 119
FV + + IL+ + + K I+ + ++ F + T +
Sbjct: 132 FVSKKGLQKILNVQKKLPIIQKIIIMDSKTD----------------YQGFQSMYTFVTS 175
Query: 120 ELPP------------KKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSV-DQMFVVT 166
LPP + I+ IM +SG+TG PKGV L ++A+ D +F
Sbjct: 176 HLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRALAVRFSHARDPIF--- 232
Query: 167 GKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGF-WRGDVRYLMEDIQELK------ 219
G + + S +P H + + G + +R + + +Q+ K
Sbjct: 233 GNQIAPDTAILSVVPFHHGFGMFTTLGYLISGFRVVLMYRFEEELFLRSLQDYKIQSALL 292
Query: 220 -PTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDS 278
PT+FS + + + L+D
Sbjct: 293 VPTLFSFLAK--------------------------------------------STLIDK 308
Query: 279 LVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAP-LTQGYGLTESCSGCF-TSLA 336
S + E + SG APL V E + P + QGYGLTE+ S T
Sbjct: 309 YDLSNLHE--------IASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPKG 360
Query: 337 DVFNMIGTVGVPMTTVEAR---LESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLT 393
D + G VG + EA+ L++ +G + RGE+ +RG + SGY P+ T
Sbjct: 361 D--DKPGAVGKVVPFFEAKVVDLDTGKTLGVNQ-----RGELSVRGPMIMSGYVNNPEAT 413
Query: 394 EEVI-VDGWFHTGDIGEWQPME 414
+I DGW H+GDI W E
Sbjct: 414 NALIDKDGWLHSGDIAYWDEDE 435
>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3A9V|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3NI2|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate:coa Ligase
Length = 536
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 103/420 (24%), Positives = 163/420 (38%), Gaps = 94/420 (22%)
Query: 5 GVNPGDRCGIYGSNCPEWIIAMEACNSQA--ITYVPLYDTLGANAVEFIINHAEVSIAFV 62
G+ GD ++ + PE+++A + + IT + T A HA+ S A +
Sbjct: 70 GIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELA-----KHAKASRAKL 124
Query: 63 QENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELP 122
+ + C Y K + FA S + + C + E Q +
Sbjct: 125 ----------LITQACYYEK-VKDFARESDVKVMCVDSAPDGCLHFSELTQADENEAPQV 173
Query: 123 PKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGK----VCSEEDTYFS 178
++ + Y+SGTTG PKGV+LT++ ++ SV Q V G ED
Sbjct: 174 DISPDDVVALPYSSGTTGLPKGVMLTHKGLIT---SVAQQ--VDGDNPNLYFHSEDVILC 228
Query: 179 FLPLAHIYDQIIETHCIHKGCSIG-----FWRGDVRYLMEDIQELKPTMFSGVPRVYDRI 233
LP+ HIY C G +G + ++ L+ I++ K ++ VP V I
Sbjct: 229 VLPMFHIYALNSIMLC---GLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSI 285
Query: 234 YTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQ 293
+P LD S +R
Sbjct: 286 -------------------------------------AKSPDLDKHDLSSLR-------- 300
Query: 294 AMLSGAAPLPIHVEEFLRVT-SGAPLTQGYGLTES---CSGCFTSLADVFNMI-GTVGVP 348
+ SG APL +E+ +R A L QGYG+TE+ + C + F++ G G
Sbjct: 301 MIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTV 360
Query: 349 MTTVEARLESVPEMGYDALSSVPR---GEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHT 404
+ E ++ PE G +S+PR GEIC+RG+ + GY P+ T I +GW HT
Sbjct: 361 VRNAEMKIVD-PETG----ASLPRNQPGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHT 415
>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis
pdb|3T5C|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
pdb|3T5C|B Chain B, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
Length = 396
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 93/416 (22%), Positives = 153/416 (36%), Gaps = 91/416 (21%)
Query: 5 GVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQE 64
G+ GDR + N E+ VP+ L A V FI++ + +
Sbjct: 50 GIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGA 109
Query: 65 NKIPSILSCLPRCCLYLKTIVSFANVSSSQKK----EAEELGVSCFSWEEFLQLGTLDCE 120
P ++ + T+ + S ++ A+E V C +
Sbjct: 110 PSAP-VIDAIRAQADPPGTVTDWIGADSLAERLRSAAADEPAVECGGDDNLF-------- 160
Query: 121 LPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFL 180
IMYTSGTTG PKGVV T++++ + S V + D L
Sbjct: 161 -----------IMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYR-----DRLLLPL 204
Query: 181 PLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNK 240
P+ H+ +G ++ + F +V+ I + +
Sbjct: 205 PMFHVAALTTVIFSAMRGVTL----------------ISMPQFDAT-KVWSLI---VEER 244
Query: 241 ISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAA 300
+ GGA+ L N + +P+ LD+ F + ++G A
Sbjct: 245 VCIGGAVPAIL----------NFMRQVPEFAE---LDAPDF-----------RYFITGGA 280
Query: 301 PLPIHVEEFLRVTSGAPL--TQGYGLTESCSGCFTSLA-DVFNMIGTVG--VPMTTVEAR 355
P+P E +++ + + QGY LTESC G L+ D G+ G T V R
Sbjct: 281 PMP---EALIKIYAAKNIEVVQGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVR 337
Query: 356 LES--VPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGE 409
+ + E G GE+ ++ + L Y+ RP+ T + +GWF TGDIGE
Sbjct: 338 GDDGVIREHG--------EGEVVIKSDILLKEYWNRPEATRDAFDNGWFRTGDIGE 385
>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase
Length = 517
Score = 68.6 bits (166), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 93/416 (22%), Positives = 153/416 (36%), Gaps = 91/416 (21%)
Query: 5 GVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQE 64
G+ GDR + N E+ VP+ L A V FI++ + +
Sbjct: 64 GIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGA 123
Query: 65 NKIPSILSCLPRCCLYLKTIVSFANVSSSQKK----EAEELGVSCFSWEEFLQLGTLDCE 120
P ++ + T+ + S ++ A+E V C +
Sbjct: 124 PSAP-VIDAIRAQADPPGTVTDWIGADSLAERLRSAAADEPAVECGGDDNLF-------- 174
Query: 121 LPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFL 180
IMYTSGTTG PKGVV T++++ + S V + D L
Sbjct: 175 -----------IMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYR-----DRLLLPL 218
Query: 181 PLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNK 240
P+ H+ +G ++ + F +V+ I + +
Sbjct: 219 PMFHVAALTTVIFSAMRGVTL----------------ISMPQFDAT-KVWSLI---VEER 258
Query: 241 ISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAA 300
+ GGA+ L N + +P+ LD+ F + ++G A
Sbjct: 259 VCIGGAVPAIL----------NFMRQVPEFAE---LDAPDF-----------RYFITGGA 294
Query: 301 PLPIHVEEFLRVTSGAPL--TQGYGLTESCSGCFTSLA-DVFNMIGTVG--VPMTTVEAR 355
P+P E +++ + + QGY LTESC G L+ D G+ G T V R
Sbjct: 295 PMP---EALIKIYAAKNIEVVQGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVR 351
Query: 356 LES--VPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGE 409
+ + E G GE+ ++ + L Y+ RP+ T + +GWF TGDIGE
Sbjct: 352 GDDGVIREHG--------EGEVVIKSDILLKEYWNRPEATRDAFDNGWFRTGDIGE 399
>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
pdb|4G36|B Chain B, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
Length = 555
Score = 67.8 bits (164), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 99/435 (22%), Positives = 162/435 (37%), Gaps = 92/435 (21%)
Query: 1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIA 60
M+ G+N R + N ++ + + + P D + +N ++ ++
Sbjct: 72 MKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVV 131
Query: 61 FVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGT-LDC 119
FV + + IL+ + + K I+ + ++ F + T +
Sbjct: 132 FVSKKGLQKILNVQKKLPIIQKIIIMDSKTD----------------YQGFQSMYTFVTS 175
Query: 120 ELPP------------KKKTNISTIMYTSGTTGEPKGVVLTNQ-AIVAEVLSVDQMFVVT 166
LPP + I+ IM +SG+TG PKGV L ++ A V + D +F
Sbjct: 176 HLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIF--- 232
Query: 167 GKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGF-WRGDVRYLMEDIQELKPTMFSG 225
G + S +P H + + G + +R + + +Q+ K
Sbjct: 233 GNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYK------ 286
Query: 226 VPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIR 285
I S L LF F + L+D S +
Sbjct: 287 ---------------IQSA-LLVPTLFSFF---------------AKSTLIDKYDLSNLH 315
Query: 286 EAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAP-LTQGYGLTESCSGCF-TSLADVFNMIG 343
E + SG APL V E + P + QGYGLTE+ S T D + G
Sbjct: 316 E--------IASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGD--DKPG 365
Query: 344 TVGVPMTTVEAR---LESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VD 399
VG + EA+ L++ +G + RGE+C+RG + SGY P+ T +I D
Sbjct: 366 AVGKVVPFFEAKVVDLDTGKTLGVNQ-----RGELCVRGPMIMSGYVNNPEATNALIDKD 420
Query: 400 GWFHTGDIGEWQPME 414
GW H+GDI W E
Sbjct: 421 GWLHSGDIAYWDEDE 435
>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform
pdb|1LCI|A Chain A, Firefly Luciferase
pdb|3RIX|A Chain A, 1.7a Resolution Structure Of A Firefly
Luciferase-Aspulvinone J Inhibitor Complex
pdb|4E5D|A Chain A, 2.2a Resolution Structure Of A Firefly
Luciferase-Benzothiazole Inhibitor Complex
Length = 550
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 99/435 (22%), Positives = 162/435 (37%), Gaps = 92/435 (21%)
Query: 1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIA 60
M+ G+N R + N ++ + + + P D + +N ++ ++
Sbjct: 67 MKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVV 126
Query: 61 FVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGT-LDC 119
FV + + IL+ + + K I+ + ++ F + T +
Sbjct: 127 FVSKKGLQKILNVQKKLPIIQKIIIMDSKTD----------------YQGFQSMYTFVTS 170
Query: 120 ELPP------------KKKTNISTIMYTSGTTGEPKGVVLTNQ-AIVAEVLSVDQMFVVT 166
LPP + I+ IM +SG+TG PKGV L ++ A V + D +F
Sbjct: 171 HLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIF--- 227
Query: 167 GKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGF-WRGDVRYLMEDIQELKPTMFSG 225
G + S +P H + + G + +R + + +Q+ K
Sbjct: 228 GNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYK------ 281
Query: 226 VPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIR 285
I S L LF F + L+D S +
Sbjct: 282 ---------------IQSA-LLVPTLFSFF---------------AKSTLIDKYDLSNLH 310
Query: 286 EAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAP-LTQGYGLTESCSGCF-TSLADVFNMIG 343
E + SG APL V E + P + QGYGLTE+ S T D + G
Sbjct: 311 E--------IASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGD--DKPG 360
Query: 344 TVGVPMTTVEAR---LESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VD 399
VG + EA+ L++ +G + RGE+C+RG + SGY P+ T +I D
Sbjct: 361 AVGKVVPFFEAKVVDLDTGKTLGVNQ-----RGELCVRGPMIMSGYVNNPEATNALIDKD 415
Query: 400 GWFHTGDIGEWQPME 414
GW H+GDI W E
Sbjct: 416 GWLHSGDIAYWDEDE 430
>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form)
pdb|3IER|A Chain A, Firefly Luciferase Apo Structure (P41 Form) With Peg 400
Bound
pdb|3IES|A Chain A, Firefly Luciferase Inhibitor Complex
Length = 551
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 99/435 (22%), Positives = 162/435 (37%), Gaps = 92/435 (21%)
Query: 1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIA 60
M+ G+N R + N ++ + + + P D + +N ++ ++
Sbjct: 67 MKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVV 126
Query: 61 FVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGT-LDC 119
FV + + IL+ + + K I+ + ++ F + T +
Sbjct: 127 FVSKKGLQKILNVQKKLPIIQKIIIMDSKTD----------------YQGFQSMYTFVTS 170
Query: 120 ELPP------------KKKTNISTIMYTSGTTGEPKGVVLTNQ-AIVAEVLSVDQMFVVT 166
LPP + I+ IM +SG+TG PKGV L ++ A V + D +F
Sbjct: 171 HLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIF--- 227
Query: 167 GKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGF-WRGDVRYLMEDIQELKPTMFSG 225
G + S +P H + + G + +R + + +Q+ K
Sbjct: 228 GNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYK------ 281
Query: 226 VPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIR 285
I S L LF F + L+D S +
Sbjct: 282 ---------------IQSA-LLVPTLFSFF---------------AKSTLIDKYDLSNLH 310
Query: 286 EAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAP-LTQGYGLTESCSGCF-TSLADVFNMIG 343
E + SG APL V E + P + QGYGLTE+ S T D + G
Sbjct: 311 E--------IASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGD--DKPG 360
Query: 344 TVGVPMTTVEAR---LESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VD 399
VG + EA+ L++ +G + RGE+C+RG + SGY P+ T +I D
Sbjct: 361 AVGKVVPFFEAKVVDLDTGKTLGVNQ-----RGELCVRGPMIMSGYVNNPEATNALIDKD 415
Query: 400 GWFHTGDIGEWQPME 414
GW H+GDI W E
Sbjct: 416 GWLHSGDIAYWDEDE 430
>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|B Chain B, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|C Chain C, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|D Chain D, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 86/413 (20%), Positives = 156/413 (37%), Gaps = 80/413 (19%)
Query: 3 SRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFV 62
+RG+ GDR E ++ A Y+PL + +++ I AE
Sbjct: 47 ARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAE------ 100
Query: 63 QENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELP 122
P I+ C P + I + + ++ + T+D
Sbjct: 101 -----PKIVVCDPSKRDGIAAIAAKVGATVETLGPDGRGSLTDAAAGASEAFATID---- 151
Query: 123 PKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPL 182
+ +++ I+YTSGTTG KG L++ + + L++ + T +D LP+
Sbjct: 152 -RGADDLAAILYTSGTTGRSKGAXLSHDNLASNSLTLVDYWRFT-----PDDVLIHALPI 205
Query: 183 AHIYDQIIETHC--IHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNK 240
H + + ++ +G I + D +++ + T+ GVP Y R+
Sbjct: 206 YHTHGLFVASNVTLFARGSXIFLPKFDPDKILD--LXARATVLXGVPTFYTRL------- 256
Query: 241 ISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAA 300
L ++ + G + +SG+A
Sbjct: 257 --------------------------------------LQSPRLTKETTGHXRLFISGSA 278
Query: 301 PLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVP 360
PL +G + + YG TE+ ++ D + G VG + V AR+ P
Sbjct: 279 PLLADTHREWSAKTGHAVLERYGXTETNXNT-SNPYDGDRVPGAVGPALPGVSARVTD-P 336
Query: 361 EMGYDALSSVPRGEIC---LRGNTLFSGYYKRPDLTE-EVIVDGWFHTGDIGE 409
E G +PRG+I ++G +F GY++ P+ T+ E DG+F TGD+G+
Sbjct: 337 ETG----KELPRGDIGXIEVKGPNVFKGYWRXPEKTKSEFRDDGFFITGDLGK 385
>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With High-Energy Intermediate
Analogue
Length = 548
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 74/290 (25%), Positives = 115/290 (39%), Gaps = 53/290 (18%)
Query: 125 KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAH 184
+K ++ IM +SG+TG PKGV LT++ IV + G S + +P H
Sbjct: 190 RKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDP--IYGNQVSPGTAVLTVVPFHH 247
Query: 185 IYDQIIETHCIHKGCSIGFW-RGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISS 243
+ + G + + D ++ +Q+ K T VP ++ I NK
Sbjct: 248 GFGMFTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLF-----AILNK--- 299
Query: 244 GGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLP 303
E Y L N L + SG APL
Sbjct: 300 --------SELLNKYDLSN-----------------------------LVEIASGGAPLS 322
Query: 304 IHVEEFLRVTSGAP-LTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEM 362
V E + P + QGYGLTE+ S + + + G G + +A++ +
Sbjct: 323 KEVGEAVARRFNLPGVRQGYGLTETTSAIIIT-PEGDDKPGASGKVVPLFKAKVIDLDTK 381
Query: 363 GYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTGDIGEWQ 411
+L RGE+C++G L GY P+ T+E+I +GW HTGDIG +
Sbjct: 382 --KSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYD 429
>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Red-Color Emission S286n Mutant Complexed
With High-Energy Intermediate Analogue
Length = 548
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 74/290 (25%), Positives = 115/290 (39%), Gaps = 53/290 (18%)
Query: 125 KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAH 184
+K ++ IM +SG+TG PKGV LT++ IV + G S + +P H
Sbjct: 190 RKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDP--IYGNQVSPGTAVLTVVPFHH 247
Query: 185 IYDQIIETHCIHKGCSIGFW-RGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISS 243
+ + G + + D ++ +Q+ K T VP ++ I NK
Sbjct: 248 GFGMFTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTNVILVPTLF-----AILNK--- 299
Query: 244 GGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLP 303
E Y L N L + SG APL
Sbjct: 300 --------SELLNKYDLSN-----------------------------LVEIASGGAPLS 322
Query: 304 IHVEEFLRVTSGAP-LTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEM 362
V E + P + QGYGLTE+ S + + + G G + +A++ +
Sbjct: 323 KEVGEAVARRFNLPGVRQGYGLTETTSAIIIT-PEGDDKPGASGKVVPLFKAKVIDLDTK 381
Query: 363 GYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTGDIGEWQ 411
+L RGE+C++G L GY P+ T+E+I +GW HTGDIG +
Sbjct: 382 --KSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYD 429
>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Mgatp
pdb|2D1R|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Oxyluciferin And Amp
Length = 548
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 74/290 (25%), Positives = 115/290 (39%), Gaps = 53/290 (18%)
Query: 125 KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAH 184
+K ++ IM +SG+TG PKGV LT++ IV + G S + +P H
Sbjct: 190 RKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDP--IYGNQVSPGTAVLTVVPFHH 247
Query: 185 IYDQIIETHCIHKGCSIGFW-RGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISS 243
+ + G + + D ++ +Q+ K T VP ++ I NK
Sbjct: 248 GFGMFTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLF-----AILNK--- 299
Query: 244 GGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLP 303
E Y L N L + SG APL
Sbjct: 300 --------SELLNKYDLSN-----------------------------LVEIASGGAPLS 322
Query: 304 IHVEEFLRVTSGAP-LTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEM 362
V E + P + QGYGLTE+ S + + + G G + +A++ +
Sbjct: 323 KEVGEAVARRFNLPGVRQGYGLTETTSAIIIT-PEGDDKPGASGKVVPLFKAKVIDLDTK 381
Query: 363 GYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTGDIGEWQ 411
+L RGE+C++G L GY P+ T+E+I +GW HTGDIG +
Sbjct: 382 --KSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYD 429
>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3
Length = 503
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 90/417 (21%), Positives = 158/417 (37%), Gaps = 90/417 (21%)
Query: 3 SRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFV 62
+RG+ GDR E ++ A Y+PL + +++ I AE
Sbjct: 47 ARGLQVGDRVAAQTEXSVEALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAE------ 100
Query: 63 QENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELP 122
P I+ C P + I + + ++ + T+D
Sbjct: 101 -----PXIVVCDPSXRDGIAAIAAXVGATVETLGPDGRGSLTDAAAGASEAFATID---- 151
Query: 123 PKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPL 182
+ +++ I+YTSGTTG G +L++ + + L++ + T +D LP+
Sbjct: 152 -RGADDLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYWRFT-----PDDVLIHALPI 205
Query: 183 AHIYDQIIETHCIHKGCSIG-FWRGDVRYLM----EDIQEL--KPTMFSGVPRVYDRIYT 235
H TH + ++ F RG + +L + I +L + T+ GVP Y R+
Sbjct: 206 YH-------THGLFVASNVTLFARGSMIFLPXFDPDXILDLMARATVLMGVPTFYTRL-- 256
Query: 236 GISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAM 295
L ++ G ++
Sbjct: 257 -------------------------------------------LQSPRLTXETTGHMRLF 273
Query: 296 LSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEAR 355
+SG+APL +G + + YG+TE+ ++ D + G VG + V AR
Sbjct: 274 ISGSAPLLADTHREWSAXTGHAVLERYGMTETNMNT-SNPYDGDRVPGAVGPALPGVSAR 332
Query: 356 LESVPEMGYDALSSVPRGEICL---RGNTLFSGYYKRPDLT-EEVIVDGWFHTGDIG 408
+ PE G + +PRG+I + G +F GY++ P+ T E DG+F TGD+G
Sbjct: 333 VTD-PETGXE----LPRGDIGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFITGDLG 384
>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|B Chain B, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|C Chain C, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
Length = 506
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 90/417 (21%), Positives = 158/417 (37%), Gaps = 90/417 (21%)
Query: 3 SRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFV 62
+RG+ GDR E ++ A Y+PL + +++ I AE
Sbjct: 47 ARGLQVGDRVAAQTEXSVEALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAE------ 100
Query: 63 QENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELP 122
P I+ C P + I + + ++ + T+D
Sbjct: 101 -----PXIVVCDPSXRDGIAAIAAXVGATVETLGPDGRGSLTDAAAGASEAFATID---- 151
Query: 123 PKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPL 182
+ +++ I+YTSGTTG G +L++ + + L++ + T +D LP+
Sbjct: 152 -RGADDLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYWRFT-----PDDVLIHALPI 205
Query: 183 AHIYDQIIETHCIHKGCSIG-FWRGDVRYLM----EDIQEL--KPTMFSGVPRVYDRIYT 235
H TH + ++ F RG + +L + I +L + T+ GVP Y R+
Sbjct: 206 YH-------THGLFVASNVTLFARGSMIFLPXFDPDXILDLMARATVLMGVPTFYTRL-- 256
Query: 236 GISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAM 295
L ++ G ++
Sbjct: 257 -------------------------------------------LQSPRLTXETTGHMRLF 273
Query: 296 LSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEAR 355
+SG+APL +G + + YG+TE+ ++ D + G VG + V AR
Sbjct: 274 ISGSAPLLADTHREWSAXTGHAVLERYGMTETNMNT-SNPYDGDRVPGAVGPALPGVSAR 332
Query: 356 LESVPEMGYDALSSVPRGEICL---RGNTLFSGYYKRPDLT-EEVIVDGWFHTGDIG 408
+ PE G + +PRG+I + G +F GY++ P+ T E DG+F TGD+G
Sbjct: 333 VTD-PETGXE----LPRGDIGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFITGDLG 384
>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 90/417 (21%), Positives = 158/417 (37%), Gaps = 90/417 (21%)
Query: 3 SRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFV 62
+RG+ GDR E ++ A Y+PL + +++ I AE
Sbjct: 47 ARGLQVGDRVAAQTEXSVEALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAE------ 100
Query: 63 QENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELP 122
P I+ C P + I + + ++ + T+D
Sbjct: 101 -----PXIVVCDPSXRDGIAAIAAXVGATVETLGPDGRGSLTDAAAGASEAFATID---- 151
Query: 123 PKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPL 182
+ +++ I+YTSGTTG G +L++ + + L++ + T +D LP+
Sbjct: 152 -RGADDLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYWRFT-----PDDVLIHALPI 205
Query: 183 AHIYDQIIETHCIHKGCSIG-FWRGDVRYLM----EDIQEL--KPTMFSGVPRVYDRIYT 235
H TH + ++ F RG + +L + I +L + T+ GVP Y R+
Sbjct: 206 YH-------THGLFVASNVTLFARGSMIFLPXFDPDXILDLMARATVLMGVPTFYTRL-- 256
Query: 236 GISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAM 295
L ++ G ++
Sbjct: 257 -------------------------------------------LQSPRLTXETTGHMRLF 273
Query: 296 LSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEAR 355
+SG+APL +G + + YG+TE+ ++ D + G VG + V AR
Sbjct: 274 ISGSAPLLADTHREWSAXTGHAVLERYGMTETNMNT-SNPYDGDRVPGAVGPALPGVSAR 332
Query: 356 LESVPEMGYDALSSVPRGEICL---RGNTLFSGYYKRPDLT-EEVIVDGWFHTGDIG 408
+ PE G + +PRG+I + G +F GY++ P+ T E DG+F TGD+G
Sbjct: 333 VTD-PETGXE----LPRGDIGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFITGDLG 384
>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris
Turkestanicus Luciferase
Length = 582
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 73/293 (24%), Positives = 114/293 (38%), Gaps = 60/293 (20%)
Query: 125 KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSV-DQMFVVTGKVCSEEDTYFSFLPLA 183
++T + IM +SG+TG PKGV LT++ I D +F G + + +P
Sbjct: 222 RETATALIMNSSGSTGLPKGVELTHKNICVRFSHCRDPVF---GNQIIPDTAILTVIPFH 278
Query: 184 HIYDQIIETHCIHKGCSIGF-WRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKIS 242
H + + G I +R + + +Q+ K I
Sbjct: 279 HGFGMFTTLGYLTCGFRIVLMYRFEEELFLRSLQDYK---------------------IQ 317
Query: 243 SGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPL 302
S L LF F + L+D S + E + SG APL
Sbjct: 318 SA-LLVPTLFSFF---------------AKSTLVDKYDLSNLHE--------IASGGAPL 353
Query: 303 PIHVEEFLRVTSGAP-LTQGYGLTESCSGCFTSLADVFNMIGTVG--VPMTTVE-ARLES 358
V E + P + QGYGLTE+ S + + G G VP + + L++
Sbjct: 354 AKEVGEAVAKRFKLPGIRQGYGLTETTSAIIITPRGRDDKPGACGKVVPFFSAKIVDLDT 413
Query: 359 VPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTGDIGEW 410
+G + RGE+C++G + GY P+ T +I DGW H+GDI +
Sbjct: 414 GKTLGVNQ-----RGELCVKGPMIMKGYVNNPEATSALIDKDGWLHSGDIAYY 461
>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
pdb|3IVR|B Chain B, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
Length = 509
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 89/416 (21%), Positives = 148/416 (35%), Gaps = 90/416 (21%)
Query: 5 GVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQE 64
GV+ GDR I NC E I + A +P+ L A+ + F++ S+
Sbjct: 52 GVHTGDRVAILSQNCSEMIELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGT 111
Query: 65 NKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGT-LDCELPP 123
+ + LP S V K+A +G + F L + P
Sbjct: 112 DYRDIVAGVLP----------SLGGV-----KKAYAIGDGSGPFAPFKDLASDTPFSAPE 156
Query: 124 KKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLA 183
+ I++T+ G P+G +++ ++ + Q +V +E D LPL
Sbjct: 157 FGAADGFVIIHTAAVGGRPRGALISQGNLL-----IAQSSLVDAWRLTEADVNLGMLPLF 211
Query: 184 HIYD-QIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKIS 242
H+ ++ T G S+ + D DI+ K T+ +
Sbjct: 212 HVTGLGLMLTLQQAGGASVIAAKFDPAQAARDIEAHKVTVMA------------------ 253
Query: 243 SGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPL 302
EFA LGN+ ++AAP + +R G
Sbjct: 254 ----------EFA--PMLGNI-----LDQAAPAQ----LASLRAVTG----------LDT 282
Query: 303 PIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPM-----TTVEARLE 357
P +E F A +G +E+ ++ A + + G P+ V+A
Sbjct: 283 PETIERFEATCPNATFWATFGQSETSG--LSTFAPYRDRPKSAGRPLFWRTVAVVDAEDR 340
Query: 358 SVP--EMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQ 411
+P E+G EI LRG T+F GY+ T+ +GW HTGD+G +
Sbjct: 341 PLPPGEVG----------EIVLRGPTVFKGYWNNAAATQHAFRNGWHHTGDMGRFD 386
>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
pdb|3G7S|B Chain B, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
Length = 549
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 99/426 (23%), Positives = 168/426 (39%), Gaps = 88/426 (20%)
Query: 1 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIA 60
+ +GV G+ G+ N +++ + A A T VP+ + +E I+N +E +
Sbjct: 69 ISRKGVRKGEHVGVCIPNSIDYVXTIYALWRVAATPVPINPXYKSFELEHILNDSEATTL 128
Query: 61 FVQ----ENKIPSILSC-LPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLG 115
V EN P + + R + + S + V S ++ E + V+
Sbjct: 129 VVHSXLYENFKPVLEKTGVERVFVVGGEVNSLSEVXDSGSEDFENVKVN----------- 177
Query: 116 TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDT 175
+ +++ I YT GTTG PKGV LT+ + A L Q+ V TG S DT
Sbjct: 178 ---------PEEDVALIPYTGGTTGXPKGVXLTHFNLAANAL---QLAVATG--LSHXDT 223
Query: 176 YFSFLPLAHIYDQIIETHCIHKGCS-IGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIY 234
P H + + + G + + L E+I++ K T VP + +
Sbjct: 224 IVGCXPXFHSAEFGLVNLXVTVGNEYVVXGXFNQEXLAENIEKYKGTFSWAVPPALNVLV 283
Query: 235 TGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQA 294
+ + S K ++++Y L+
Sbjct: 284 NTLES--------SNKTYDWSY-----------------------------------LKV 300
Query: 295 MLSGAAPL-PIHVEEFLRVTS---GAPL---TQGYGLTESCSGCFTSLADVFNMIGTVGV 347
+GA P+ P VE+ L++ + P Q +G TE+C T+ + T GV
Sbjct: 301 FATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGXTEACPXVTTNPPLRLDKSTTQGV 360
Query: 348 PMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIV-----DGWF 402
P + +E ++ S+ E G + L GEI +RG +F GY+KR +E +F
Sbjct: 361 PXSDIELKVISL-EDGRE-LGVGESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFF 418
Query: 403 HTGDIG 408
TGD+G
Sbjct: 419 RTGDVG 424
>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|B Chain B, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|C Chain C, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
Length = 501
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 64/284 (22%), Positives = 122/284 (42%), Gaps = 65/284 (22%)
Query: 128 NISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDT-YFSFLPLAHIY 186
+I++IM+TSGTTG K V T + A + + + + DT + S LP+ HI
Sbjct: 164 DIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKE------SLGFDRDTNWLSVLPIYHIS 217
Query: 187 DQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGA 246
+ + +G ++ R+ D+
Sbjct: 218 GLSVLLRAVIEGFTV--------------------------RIVDKFN------------ 239
Query: 247 LSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHV 306
++++ N ++ ++ +PQ L+ L+ + E + LQ +L G A L +
Sbjct: 240 -AEQILTMIKNERITHISL-VPQT-----LNWLMQQGLHEPYN--LQKILLGGAKLSATM 290
Query: 307 EEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMI-GTVGVPMTTVEARLESVPEMGYD 365
E + P+ +G+TE+CS T+ ++ + TVG+P V+ ++++ + G+
Sbjct: 291 IE-TALQYNLPIYNSFGMTETCSQFLTATPEMLHARPDTVGMPSANVDVKIKNPNKEGH- 348
Query: 366 ALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGE 409
GE+ ++G + +GY DLT +G+F+TGDI E
Sbjct: 349 -------GELMIKGANVMNGYLYPTDLT-GTFENGYFNTGDIAE 384
>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
pdb|3PBK|B Chain B, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
Length = 583
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 76/184 (41%), Gaps = 24/184 (13%)
Query: 3 SRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFV 62
S + GDR + E++ A AC + VPL A+ + + A +
Sbjct: 67 SLNLKKGDRVALIAETSSEFVEAFFACQYAGLVAVPL-------AIPXGVGQRDSWSAKL 119
Query: 63 QENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELP 122
Q + SC P + + N ++ + EL V +W F L D L
Sbjct: 120 QG----LLASCQPAAIITGDEWLPLVNAAT---HDNPELHVLSHAW--FKALPEADVALQ 170
Query: 123 PKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEV--LSVDQMFVVTGKVCSEEDTYFSFL 180
+I+ + YTSG+T P+GV++T++ + A + +S D + + G C S+L
Sbjct: 171 RPVPNDIAYLQYTSGSTRFPRGVIITHREVXANLRAISHDGIKLRPGDRC------VSWL 224
Query: 181 PLAH 184
P H
Sbjct: 225 PFYH 228
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 373 GEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIG 408
G IC+ G +L SGY+ +E+ GW TGD+G
Sbjct: 411 GHICISGPSLXSGYFGDQVSQDEIAATGWLDTGDLG 446
>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QVY|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3,4- Dichlorobenzoate
Length = 504
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 5/93 (5%)
Query: 321 GYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRG- 379
GYG TE+ + + GT P E R+ + + +++ GE+ +
Sbjct: 303 GYGTTEAMNSLYMRQPKT----GTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAAS 358
Query: 380 NTLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQP 412
++ F GY +P T E + DGW+ T D+ W P
Sbjct: 359 DSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTP 391
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Query: 119 CELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFS 178
E P ++ + I YTSGTTG PK ++ +A + VL M G +
Sbjct: 145 IEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLF---MSTQVGLRHGRHNVVLG 201
Query: 179 FLPLAHI 185
+PL H+
Sbjct: 202 LMPLYHV 208
>pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
pdb|1AMU|B Chain B, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
Length = 563
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 45/106 (42%), Gaps = 26/106 (24%)
Query: 321 GYGLTES--CSGCFTSLADVFNMIGTVGVPMTTVEA-------RLESVPEMGYDALSSVP 371
YG TE+ C+ + + + +G P+ + +L+SV E G
Sbjct: 322 AYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVDENLQLKSVGEAG-------- 373
Query: 372 RGEICLRGNTLFSGYYKRPDLTEEVIVDGWF-------HTGDIGEW 410
E+C+ G L GY+KRP+LT + VD F TGD W
Sbjct: 374 --ELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARW 417
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 23/30 (76%)
Query: 123 PKKKTNISTIMYTSGTTGEPKGVVLTNQAI 152
P K T+++ ++YTSGTTG PKG +L ++ I
Sbjct: 178 PSKSTDLAYVIYTSGTTGNPKGTMLEHKGI 207
>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To
4cba-adenylate
Length = 504
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 375 ICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQP 412
I ++ F GY +P+ T E + DGW+ T D+ W P
Sbjct: 354 IVAASDSAFVGYLNQPEATAEKLQDGWYRTSDVAVWTP 391
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Query: 119 CELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFS 178
E P ++ + I YTSGTTG PK ++ +A + VL M G +
Sbjct: 145 IEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLF---MSTQVGLRHGRHNVVLG 201
Query: 179 FLPLAHI 185
+PL H+
Sbjct: 202 LMPLYHV 208
>pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Atp From Streptomyces
pdb|3VNR|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Aminobutyric Acid And Amp From Streptomyces
pdb|3VNS|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With D-valine And Amp From Streptomyces
Length = 544
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 70/165 (42%), Gaps = 28/165 (16%)
Query: 3 SRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFV 62
+ GV PGDR + S E I+A+ A YVP+ + +FI+ + S A +
Sbjct: 79 AEGVRPGDRVALRMSPGAEAIVAILAILKCGAAYVPVDLRNPVSRSDFILADSGAS-ALI 137
Query: 63 QENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELP 122
E P + +V A V+ + K+AE V+ P
Sbjct: 138 GE----------PHEGCAVTRVVRTAAVA--ECKDAEPGPVTG---------------AP 170
Query: 123 PKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTG 167
+++ ++YTSGTTG PKGV + + ++A + +F +G
Sbjct: 171 GPGAEDMAYVIYTSGTTGNPKGVPVRHANVLALLAGAPSVFDFSG 215
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 373 GEICLRGNTLFSGYYKRPDLTEE 395
GE+ L G L GY +RP+LT E
Sbjct: 378 GELWLSGAQLAEGYLRRPELTAE 400
>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QW0|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, I303a Mutation,
Bound To 3,4 Dichlorobenzoate
Length = 504
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 375 ICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQP 412
I ++ F GY +P T E + DGW+ T D+ W P
Sbjct: 354 IVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTP 391
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Query: 119 CELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFS 178
E P ++ + I YTSGTTG PK ++ +A + VL M G +
Sbjct: 145 IEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLF---MSTQVGLRHGRHNVVLG 201
Query: 179 FLPLAHI 185
+PL H+
Sbjct: 202 LMPLYHV 208
>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND
To 4cb
Length = 504
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 375 ICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQP 412
I ++ F GY +P T E + DGW+ T D+ W P
Sbjct: 354 IVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTP 391
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Query: 119 CELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFS 178
E P ++ + I YTSGTTG PK ++ +A + VL M G +
Sbjct: 145 IEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLF---MSTQVGLRHGRHNVVLG 201
Query: 179 FLPLAHI 185
+PL H+
Sbjct: 202 LMPLYHV 208
>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO
4-Chlorobenzoate
pdb|3CW9|A Chain A, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
pdb|3CW9|B Chain B, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
Length = 504
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 375 ICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQP 412
I ++ F GY +P T E + DGW+ T D+ W P
Sbjct: 354 IVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTP 391
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Query: 119 CELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFS 178
E P ++ + I YTSGTTG PK ++ +A + VL M G +
Sbjct: 145 IEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLF---MSTQVGLRHGRHNVVLG 201
Query: 179 FLPLAHI 185
+PL H+
Sbjct: 202 LMPLYHV 208
>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A
Nonribosomal Peptide Synthetase Termination Module
Length = 1304
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 28/47 (59%), Gaps = 6/47 (12%)
Query: 132 IMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFS 178
IMYTSGTTG+PKG + T+ I V VD M S++DT+ S
Sbjct: 612 IMYTSGTTGKPKGNITTHANIQGLVKHVDYM------AFSDQDTFLS 652
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 51/121 (42%), Gaps = 19/121 (15%)
Query: 305 HVEEFLRVTSGAPLTQGYGLTE----SCSGCFTSLADVFNMIGTVGVPMTTVEARL--ES 358
HV + LR+ L YG TE + + L D + + +G P++ + E
Sbjct: 736 HVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDSISSL-PIGKPISNASVYILNEQ 794
Query: 359 VPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWF-------HTGDIGEWQ 411
+ A+ GE+C+ G + GY R DLT+E ++ F TGD+ W
Sbjct: 795 SQLQPFGAV-----GELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWL 849
Query: 412 P 412
P
Sbjct: 850 P 850
>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED,
SELENOMETHIONINE
Length = 504
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 375 ICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQP 412
I ++ F GY +P T E + DGW+ T D+ W P
Sbjct: 354 IVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTP 391
Score = 31.6 bits (70), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 3/67 (4%)
Query: 119 CELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFS 178
E P ++ + I YTSGTTG PK ++ +A + VL G +
Sbjct: 145 IEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFXSTQ---VGLRHGRHNVVLG 201
Query: 179 FLPLAHI 185
PL H+
Sbjct: 202 LXPLYHV 208
>pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From
Legionella Pneumophila
pdb|3LNV|A Chain A, The Crystal Structure Of Fatty Acyl-Adenylate Ligase From
L. Pneumophila In Complex With Acyl Adenylate And
Pyrophosphate
Length = 590
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 73/322 (22%), Positives = 128/322 (39%), Gaps = 66/322 (20%)
Query: 125 KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAH 184
K +I+ + YTSG+T PKGV +++ ++ +++++F T ++E FS+LP H
Sbjct: 165 KSNDIAFLQYTSGSTXHPKGVXVSHHNLLD---NLNKIF--TSFHXNDETIIFSWLPPHH 219
Query: 185 IYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSG 244
I GC + G ++ + P F P + + T IS
Sbjct: 220 DXGLI--------GCILTPIYGGIQAIXXS-----PFSFLQNPLSWLKHITKYKATISGS 266
Query: 245 GALSKKLFEFAYNYKLGNMKKGMPQ-----------NKAAPLLDSLV--FSKIREAFGGR 291
FAY+Y + +++ + N A P+ + F + + FG R
Sbjct: 267 P-------NFAYDYCVKRIREEKKEGLDLSSWVTAFNGAEPVREETXEHFYQAFKEFGFR 319
Query: 292 LQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLT---ESCSGCFTSLAD-----VFNMIG 343
+A P E L VT G P + LT E AD + ++
Sbjct: 320 KEAFY----PCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVS 375
Query: 344 TVGVPMTTVE-ARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEV----IV 398
+ G P+ V+ +++ +D + GEI ++ N++ GY+ +P+ T I
Sbjct: 376 S-GNPIQEVKIIDPDTLIPCDFDQV-----GEIWVQSNSVAKGYWNQPEETRHAFAGKIK 429
Query: 399 DG-----WFHTGDIGEWQPMEL 415
D + TGD+G EL
Sbjct: 430 DDERSAIYLRTGDLGFLHENEL 451
>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
pdb|3ETC|B Chain B, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
Length = 580
Score = 36.2 bits (82), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 55/122 (45%), Gaps = 14/122 (11%)
Query: 294 AMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVP----- 348
A+++G P FL T G L +G+G TE+ + + G++G P
Sbjct: 346 AVVAGEPLNPEVFNRFLEFT-GIKLMEGFGQTETVV-TIATFPWMEPKPGSIGKPTPGYK 403
Query: 349 --MTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGD 406
+ + RL V E G ++++ + LF Y K P+ TEE DG++HTGD
Sbjct: 404 IELMDRDGRLCEVGEEGEIVINTMEGKPV-----GLFVHYGKDPERTEETWHDGYYHTGD 458
Query: 407 IG 408
+
Sbjct: 459 MA 460
>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O82|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O83|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O83|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O84|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3O84|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3U16|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U16|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U17|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
pdb|3U17|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
Length = 544
Score = 35.8 bits (81), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 11/126 (8%)
Query: 292 LQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTV-GVPMT 350
L+ + G A P + + L Q +G+ E +T L D I T G P++
Sbjct: 309 LKLLQVGGASFPESLARQVPEVLNCKLQQVFGMAEGLVN-YTRLDDSDEQIFTTQGRPIS 367
Query: 351 TVEARLESVPEMGYDALSSVPRGEICL---RGNTLFSGYYKRPDLTEEVI-VDGWFHTGD 406
+ + ++ V E VP GEI + RG F GYY+ P+ +V D ++++GD
Sbjct: 368 S-DDEIKIVDEQ----YREVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGD 422
Query: 407 IGEWQP 412
+ + P
Sbjct: 423 LVQRTP 428
>pdb|3FCC|A Chain A, Crystal Structure Of Dlta Protein In Complex With Atp And
Magnesium
pdb|3FCE|A Chain A, Crystal Structure Of Bacillus Cereus D-Alanyl Carrier
Protein Ligase Dlta In Complex With Atp: Implications
For Adenylation Mechanism
Length = 512
Score = 35.0 bits (79), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 79/187 (42%), Gaps = 30/187 (16%)
Query: 8 PGDRCGI--YGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQEN 65
P DR I YG PE II C Y+P+ ++ A+ V+ I AE S A + +
Sbjct: 48 PDDRSPIMVYGHMQPEMIINFLGCVKAGHAYIPVDLSIPADRVQRI---AENSGAKLLLS 104
Query: 66 KIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLG-TLDCELPPK 124
++ LP IVS N+ F F G T + E K
Sbjct: 105 ATAVTVTDLPV------RIVSEDNLKD------------IF----FTHKGNTPNPEHAVK 142
Query: 125 KKTNISTIMYTSGTTGEPKGVVLTNQAIVA-EVLSVDQMFVVTGKVCSEEDTYFSFLPLA 183
N I+YTSG+TG PKGV +T +V+ +V+ + TG+V + + L +
Sbjct: 143 GDENFY-IIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVM 201
Query: 184 HIYDQII 190
IY ++
Sbjct: 202 DIYPSLV 208
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
Query: 372 RGEICLRGNTLFSGYYKRPDLTEE--VIVDG--WFHTGDIG 408
+GEI + G ++ GY P+LTE+ ++DG + TGD G
Sbjct: 345 KGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAG 385
>pdb|3DHV|A Chain A, Crystal Structure Of Dlta Protein In Complex With
D-Alanine Adenylate
Length = 512
Score = 35.0 bits (79), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 79/187 (42%), Gaps = 30/187 (16%)
Query: 8 PGDRCGI--YGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQEN 65
P DR I YG PE II C Y+P+ ++ A+ V+ I AE S A + +
Sbjct: 48 PDDRSPIMVYGHMQPEMIINFLGCVKAGHAYIPVDLSIPADRVQRI---AENSGAKLLLS 104
Query: 66 KIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLG-TLDCELPPK 124
++ LP IVS N+ F F G T + E K
Sbjct: 105 ATAVTVTDLPV------RIVSEDNLKD------------IF----FTHKGNTPNPEHAVK 142
Query: 125 KKTNISTIMYTSGTTGEPKGVVLTNQAIVA-EVLSVDQMFVVTGKVCSEEDTYFSFLPLA 183
N I+YTSG+TG PKGV +T +V+ +V+ + TG+V + + L +
Sbjct: 143 GDENF-YIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVM 201
Query: 184 HIYDQII 190
IY ++
Sbjct: 202 DIYPSLV 208
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
Query: 372 RGEICLRGNTLFSGYYKRPDLTEEV--IVDG--WFHTGDIG 408
+GEI + G ++ GY P+LTE+ ++DG + TGD G
Sbjct: 345 KGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAG 385
>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation
pdb|2P2M|B Chain B, Acetyl-Coa Synthetase, R194a Mutation
Length = 652
Score = 35.0 bits (79), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 62/156 (39%), Gaps = 18/156 (11%)
Query: 5 GVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQE 64
G+ GD IY PE +AM AC + ++ AV I + + +
Sbjct: 128 GIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITAD 187
Query: 65 NKIPSILSCLPRCCLYLKTIVSFA----NVSSSQKKEAEELGVSCFSWEEFLQLGTLDC- 119
+ + S + LK V A NV+S + + S W+E L D
Sbjct: 188 EGVRAGAS------IPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLI 241
Query: 120 -ELPPKKKTNIST------IMYTSGTTGEPKGVVLT 148
+ P+ + I+YTSG+TG+PKGV+ T
Sbjct: 242 EKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHT 277
>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
pdb|2P2F|B Chain B, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
Length = 652
Score = 34.7 bits (78), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 62/156 (39%), Gaps = 18/156 (11%)
Query: 5 GVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQE 64
G+ GD IY PE +AM AC + ++ AV I + + +
Sbjct: 128 GIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITAD 187
Query: 65 NKIPSILSCLPRCCLYLKTIVSFA----NVSSSQKKEAEELGVSCFSWEEFLQLGTLDC- 119
+ + S + LK V A NV+S + + S W+E L D
Sbjct: 188 EGVRAGRS------IPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLI 241
Query: 120 -ELPPKKKTNIST------IMYTSGTTGEPKGVVLT 148
+ P+ + I+YTSG+TG+PKGV+ T
Sbjct: 242 EKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHT 277
>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG3|B Chain B, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG4|A Chain A, Acetyl Coa Synthetase, Salmonella Enterica
pdb|1PG4|B Chain B, Acetyl Coa Synthetase, Salmonella Enterica
Length = 652
Score = 34.7 bits (78), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 62/156 (39%), Gaps = 18/156 (11%)
Query: 5 GVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQE 64
G+ GD IY PE +AM AC + ++ AV I + + +
Sbjct: 128 GIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITAD 187
Query: 65 NKIPSILSCLPRCCLYLKTIVSFA----NVSSSQKKEAEELGVSCFSWEEFLQLGTLDC- 119
+ + S + LK V A NV+S + + S W+E L D
Sbjct: 188 EGVRAGRS------IPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLI 241
Query: 120 -ELPPKKKTNIST------IMYTSGTTGEPKGVVLT 148
+ P+ + I+YTSG+TG+PKGV+ T
Sbjct: 242 EKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHT 277
>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation
pdb|2P2J|B Chain B, Acetyl-Coa Synthetase, K609a Mutation
Length = 652
Score = 34.7 bits (78), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 62/156 (39%), Gaps = 18/156 (11%)
Query: 5 GVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQE 64
G+ GD IY PE +AM AC + ++ AV I + + +
Sbjct: 128 GIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITAD 187
Query: 65 NKIPSILSCLPRCCLYLKTIVSFA----NVSSSQKKEAEELGVSCFSWEEFLQLGTLDC- 119
+ + S + LK V A NV+S + + S W+E L D
Sbjct: 188 EGVRAGRS------IPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLI 241
Query: 120 -ELPPKKKTNIST------IMYTSGTTGEPKGVVLT 148
+ P+ + I+YTSG+TG+PKGV+ T
Sbjct: 242 EKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHT 277
>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation
pdb|2P2B|B Chain B, Acetyl-coa Synthetase, V386a Mutation
Length = 652
Score = 34.7 bits (78), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 62/156 (39%), Gaps = 18/156 (11%)
Query: 5 GVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQE 64
G+ GD IY PE +AM AC + ++ AV I + + +
Sbjct: 128 GIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITAD 187
Query: 65 NKIPSILSCLPRCCLYLKTIVSFA----NVSSSQKKEAEELGVSCFSWEEFLQLGTLDC- 119
+ + S + LK V A NV+S + + S W+E L D
Sbjct: 188 EGVRAGRS------IPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLI 241
Query: 120 -ELPPKKKTNIST------IMYTSGTTGEPKGVVLT 148
+ P+ + I+YTSG+TG+PKGV+ T
Sbjct: 242 EKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHT 277
>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation
pdb|2P20|B Chain B, Acetyl-Coa Synthetase, R584a Mutation
Length = 652
Score = 34.7 bits (78), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 62/156 (39%), Gaps = 18/156 (11%)
Query: 5 GVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQE 64
G+ GD IY PE +AM AC + ++ AV I + + +
Sbjct: 128 GIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITAD 187
Query: 65 NKIPSILSCLPRCCLYLKTIVSFA----NVSSSQKKEAEELGVSCFSWEEFLQLGTLDC- 119
+ + S + LK V A NV+S + + S W+E L D
Sbjct: 188 EGVRAGRS------IPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLI 241
Query: 120 -ELPPKKKTNIST------IMYTSGTTGEPKGVVLT 148
+ P+ + I+YTSG+TG+PKGV+ T
Sbjct: 242 EKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHT 277
>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation
pdb|2P2Q|B Chain B, Acetyl-Coa Synthetase, R584e Mutation
Length = 652
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 62/156 (39%), Gaps = 18/156 (11%)
Query: 5 GVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQE 64
G+ GD IY PE +AM AC + ++ AV I + + +
Sbjct: 128 GIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITAD 187
Query: 65 NKIPSILSCLPRCCLYLKTIVSFA----NVSSSQKKEAEELGVSCFSWEEFLQLGTLDC- 119
+ + S + LK V A NV+S + + S W+E L D
Sbjct: 188 EGVRAGRS------IPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLI 241
Query: 120 -ELPPKKKTNIST------IMYTSGTTGEPKGVVLT 148
+ P+ + I+YTSG+TG+PKGV+ T
Sbjct: 242 EKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHT 277
>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
pdb|2V7B|B Chain B, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
Length = 529
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 49/113 (43%), Gaps = 21/113 (18%)
Query: 128 NISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYD 187
+I+ +Y+SG+TG+PKG V T+ A + +++ +E D FS L Y
Sbjct: 184 DIAFWLYSSGSTGKPKGTVHTH----ANLYWTAELYAKPILGIAENDVVFSAAKLFFAYG 239
Query: 188 QIIETHCIHKGCSIGFWRGDVRYLMED----------IQELKPTMFSGVPRVY 230
+ G + G LM + + E +PT+F GVP +Y
Sbjct: 240 -------LGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLY 285
>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|B Chain B, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|C Chain C, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|D Chain D, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|E Chain E, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|F Chain F, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|G Chain G, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|H Chain H, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|I Chain I, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|J Chain J, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
Length = 617
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 54/134 (40%), Gaps = 29/134 (21%)
Query: 283 KIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLAD-VFNM 341
K+ + G RL A L+ P I G L Q +G+ E +T L D +
Sbjct: 305 KLLQVGGARLSATLAARIPAEI----------GCQLQQVFGMAEGLVN-YTRLDDSAEKI 353
Query: 342 IGTVGVPMTTVE----ARLESVPEMGYDALSSVPRGEI---CLRGNTLFSGYYKRPDLTE 394
I T G PM + A E P +P+GE+ RG F GYYK P
Sbjct: 354 IHTQGYPMCPDDEVWVADAEGNP---------LPQGEVGRLMTRGPYTFRGYYKSPQHNA 404
Query: 395 EVI-VDGWFHTGDI 407
+G++ +GD+
Sbjct: 405 SAFDANGFYCSGDL 418
>pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|B Chain B, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|C Chain C, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|D Chain D, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
Length = 570
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 23/33 (69%)
Query: 128 NISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVD 160
+++ +M+TSG+TG PKGV+ ++A+ L D
Sbjct: 215 DVACVMFTSGSTGRPKGVMSPHRALTGTYLGQD 247
Score = 32.3 bits (72), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 55/132 (41%), Gaps = 14/132 (10%)
Query: 278 SLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLAD 337
+ + ++ EAF G A+ G HV + R L GYG ES FT+
Sbjct: 315 NFLVDEVPEAFEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMG--FTTHHA 372
Query: 338 VF--NMIGT---VGVPMTTVEARL--ESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRP 390
V ++ GT +GVP+ A + + + AL GE+ + G L GY RP
Sbjct: 373 VVAGDLSGTALPIGVPLAGKRAYVLDDDLKPAANGAL-----GELYVAGAGLAHGYVSRP 427
Query: 391 DLTEEVIVDGWF 402
LT E V F
Sbjct: 428 ALTAERFVADPF 439
>pdb|4GR4|A Chain A, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|B Chain B, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|C Chain C, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|D Chain D, Crystal Structure Of Slgn1deltaasub
Length = 469
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 23/33 (69%)
Query: 128 NISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVD 160
+++ +M+TSG+TG PKGV+ ++A+ L D
Sbjct: 215 DVACVMFTSGSTGRPKGVMSPHRALTGTYLGQD 247
Score = 32.0 bits (71), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 55/130 (42%), Gaps = 14/130 (10%)
Query: 276 LDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSL 335
L + + ++ EAF G A+ G HV + R L GYG ES FT+
Sbjct: 313 LFNFLVDEVPEAFEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMG--FTTH 370
Query: 336 ADVF--NMIGT---VGVPMTTVEARL--ESVPEMGYDALSSVPRGEICLRGNTLFSGYYK 388
V ++ GT +GVP+ A + + + AL GE+ + G L GY
Sbjct: 371 HAVVAGDLSGTALPIGVPLAGKRAYVLDDDLKPAANGAL-----GELYVAGAGLAHGYVS 425
Query: 389 RPDLTEEVIV 398
RP LT E V
Sbjct: 426 RPALTAERFV 435
>pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|B Chain B, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|C Chain C, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
Length = 569
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 29/143 (20%), Positives = 52/143 (36%), Gaps = 19/143 (13%)
Query: 5 GVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQE 64
G+ GDR + PEW + + C + ++P + + + + + ++ +
Sbjct: 95 GLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGD 154
Query: 65 NKIPSILSCLPRC-CLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQL---GTLDCE 120
I + + C L +K +VS SC W F +L +
Sbjct: 155 EVIQEVDTVASECPSLRIKLLVSEK---------------SCDGWLNFKKLLNEASTTHH 199
Query: 121 LPPKKKTNISTIMYTSGTTGEPK 143
S I +TSGT+G PK
Sbjct: 200 CVETGSQEASAIYFTSGTSGLPK 222
>pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a, With L64p Mutation
pdb|3C5E|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Atp
pdb|3DAY|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp-Cpp
pdb|2VZE|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|C Chain C, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|3EQ6|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3EQ6|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3GPC|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
pdb|3GPC|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
Length = 570
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 29/143 (20%), Positives = 52/143 (36%), Gaps = 19/143 (13%)
Query: 5 GVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQE 64
G+ GDR + PEW + + C + ++P + + + + + ++ +
Sbjct: 95 GLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGD 154
Query: 65 NKIPSILSCLPRC-CLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQL---GTLDCE 120
I + + C L +K +VS SC W F +L +
Sbjct: 155 EVIQEVDTVASECPSLRIKLLVSEK---------------SCDGWLNFKKLLNEASTTHH 199
Query: 121 LPPKKKTNISTIMYTSGTTGEPK 143
S I +TSGT+G PK
Sbjct: 200 CVETGSQEASAIYFTSGTSGLPK 222
>pdb|3L8C|A Chain A, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3L8C|B Chain B, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3LGX|A Chain A, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|B Chain B, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|C Chain C, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|D Chain D, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
Length = 521
Score = 31.6 bits (70), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Query: 367 LSSVPRGEICLRGNTLFSGYYKRPDLTEEVIV----DGWFHTGDIG 408
LSS +GEI + G + GY P+ T E +HTGDIG
Sbjct: 343 LSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIG 388
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 20/23 (86%)
Query: 132 IMYTSGTTGEPKGVVLTNQAIVA 154
I++TSGTTG+PKGV +++ +++
Sbjct: 150 IIFTSGTTGQPKGVQISHDNLLS 172
>pdb|3DKZ|A Chain A, Crystal Structure Of The Q7w9w5_borpa Protein From
Bordetella Parapertussis. Northeast Structural Genomics
Consortium Target Bpr208c.
pdb|3DKZ|B Chain B, Crystal Structure Of The Q7w9w5_borpa Protein From
Bordetella Parapertussis. Northeast Structural Genomics
Consortium Target Bpr208c
Length = 142
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 187 DQIIETHCIHKGCSIGFWRGDVR 209
D +IET C+ +G SI F G++R
Sbjct: 90 DLVIETRCLRRGASIAFCEGEIR 112
>pdb|1SQJ|A Chain A, Crystal Structure Analysis Of Oligoxyloglucan
Reducing-End- Specific Cellobiohydrolase (Oxg-Rcbh)
pdb|1SQJ|B Chain B, Crystal Structure Analysis Of Oligoxyloglucan
Reducing-End- Specific Cellobiohydrolase (Oxg-Rcbh)
Length = 789
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 7/76 (9%)
Query: 198 GCSIGFWRGD------VRYLMEDIQELKPTMFSGVPRVYDRIYTGISNK-ISSGGALSKK 250
G IG +R D R ++ PTM P+VY R+Y G + + I +KK
Sbjct: 707 GSDIGLYRSDDNGSTWTRVNDQEHNYSGPTMIEADPKVYGRVYLGTNGRGIVYADLTNKK 766
Query: 251 LFEFAYNYKLGNMKKG 266
E K N +KG
Sbjct: 767 SNEEKSTAKCANGQKG 782
>pdb|2EBS|A Chain A, Crystal Structure Anaalysis Of Oligoxyloglucan
Reducing-End- Specific Cellobiohydrolase (Oxg-Rcbh)
D465n Mutant Complexed With A Xyloglucan Heptasaccharide
pdb|2EBS|B Chain B, Crystal Structure Anaalysis Of Oligoxyloglucan
Reducing-End- Specific Cellobiohydrolase (Oxg-Rcbh)
D465n Mutant Complexed With A Xyloglucan Heptasaccharide
Length = 789
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 7/76 (9%)
Query: 198 GCSIGFWRGD------VRYLMEDIQELKPTMFSGVPRVYDRIYTGISNK-ISSGGALSKK 250
G IG +R D R ++ PTM P+VY R+Y G + + I +KK
Sbjct: 707 GSDIGLYRSDDNGSTWTRVNDQEHNYSGPTMIEADPKVYGRVYLGTNGRGIVYADLTNKK 766
Query: 251 LFEFAYNYKLGNMKKG 266
E K N +KG
Sbjct: 767 SNEEKSTAKCANGQKG 782
>pdb|2W9M|A Chain A, Structure Of Family X Dna Polymerase From Deinococcus
Radiodurans
pdb|2W9M|B Chain B, Structure Of Family X Dna Polymerase From Deinococcus
Radiodurans
Length = 578
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 75/189 (39%), Gaps = 17/189 (8%)
Query: 211 LMEDIQELKPTMFSGVPRVYDRIYTGISNKISSG--GALSKKLFEFAYNYKLGNMKKGMP 268
L E+ EL F+G+P+V I +S+ SG L + +G+
Sbjct: 47 LNEETPELLAREFTGIPKVGKGIAAELSDFARSGTFAPLEAAAGQLPPGLLDLLGVRGLG 106
Query: 269 QNKAAPL----LDSLVFSKIREAFGGRLQAMLSG-----AAPLPIHVEEFLRVTSGAPLT 319
K L +DSL ++REA A L G AA + +V L
Sbjct: 107 PKKIRSLWLAGIDSL--ERLREAAESGELAGLKGFGAKSAATILENVVFLFEARQRQSLR 164
Query: 320 QGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRG 379
G + E +G T L+ G V + TV A +V D L+ +P E+ ++G
Sbjct: 165 AGLAVAEELAGALTDLSPA--PAGDVRRGLETVRAAELTVTGTPDDVLARLP--ELTVQG 220
Query: 380 NTLFSGYYK 388
+ + SG Y+
Sbjct: 221 DGVLSGDYE 229
>pdb|1MIO|C Chain C, X-Ray Crystal Structure Of The Nitrogenase Molybdenum-Iron
Protein From Clostridium Pasteurianum At 3.0 Angstroms
Resolution
pdb|1MIO|A Chain A, X-Ray Crystal Structure Of The Nitrogenase Molybdenum-Iron
Protein From Clostridium Pasteurianum At 3.0 Angstroms
Resolution
Length = 533
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 12/45 (26%)
Query: 215 IQELKPTMFSGVPRVYDRIYTGISNK--ISSGGALSKKLFEFAYN 257
+++LKP MF + GI K I GG LSK+L + YN
Sbjct: 452 LEKLKPDMF----------FAGIKEKFVIQKGGVLSKQLHSYDYN 486
>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate
pdb|1MDF|A Chain A, Crystal Structure Of Dhbe In Absence Of Substrate
Length = 539
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 12/83 (14%)
Query: 109 EEFLQLGTLDCE---LPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVV 165
EEFL L L E LP K ++++ + + G+TG K + T+ + +
Sbjct: 161 EEFLPLEDLHTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKR------- 213
Query: 166 TGKVC--SEEDTYFSFLPLAHIY 186
+ +VC Y + LP+AH Y
Sbjct: 214 SVEVCWLDHSTVYLAALPMAHNY 236
>pdb|3E7W|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
pdb|3E7X|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
Length = 511
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 43/99 (43%), Gaps = 27/99 (27%)
Query: 336 ADVFNMIG--TVGVPMTTVE------ARLESVPEMGY--------------DALSSVPRG 373
A +FN G V +T+VE +R ES+P +G+ L +G
Sbjct: 287 AKIFNTYGPTEATVAVTSVEITNDVISRSESLP-VGFAKPDMNIFIMDEEGQPLPEGEKG 345
Query: 374 EICLRGNTLFSGYYKRPDLTEEVIVDG---W-FHTGDIG 408
EI + G ++ GY P+LTE+ W + TGD G
Sbjct: 346 EIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAG 384
Score = 28.1 bits (61), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 11/17 (64%), Positives = 15/17 (88%)
Query: 132 IMYTSGTTGEPKGVVLT 148
I+YTSG+TG PKGV ++
Sbjct: 148 IIYTSGSTGNPKGVQIS 164
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,358,925
Number of Sequences: 62578
Number of extensions: 509925
Number of successful extensions: 1121
Number of sequences better than 100.0: 57
Number of HSP's better than 100.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 972
Number of HSP's gapped (non-prelim): 115
length of query: 415
length of database: 14,973,337
effective HSP length: 101
effective length of query: 314
effective length of database: 8,652,959
effective search space: 2717029126
effective search space used: 2717029126
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)