BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014952
(415 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3A9V|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3NI2|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate:coa Ligase
Length = 536
Score = 573 bits (1478), Expect = e-164, Method: Compositional matrix adjust.
Identities = 268/393 (68%), Positives = 321/393 (81%), Gaps = 1/393 (0%)
Query: 7 HQEFIFRSKLPDIYIPNHLPLHTYCFENISQFADRPCIINGPTGDVYTYADVELTSRKVA 66
+EFIFRSKLPDIYIP +LPLH+Y EN+S + +PC+ING GDVYTYADVELT+R+VA
Sbjct: 4 QEEFIFRSKLPDIYIPKNLPLHSYVLENLSNHSSKPCLINGANGDVYTYADVELTARRVA 63
Query: 67 AGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPFYTPPEXXXXXXXXXXX 126
+GL+K+G+Q+GDVIML L + P+FV AFLGAS+ GA T ANPF TP E
Sbjct: 64 SGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAK 123
Query: 127 XXXXXXVYNDKVRDLSEHHGARIVTIDPPPENCLHFSELITQADENEIPAVKINPDDVVA 186
Y +KV+D + +++ +D P+ CLHFSEL TQADENE P V I+PDDVVA
Sbjct: 124 LLITQACYYEKVKDFARESDVKVMCVDSAPDGCLHFSEL-TQADENEAPQVDISPDDVVA 182
Query: 187 LPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSLNSVL 246
LPYSSGTTGLPKGVMLTHKGL+TSVAQQVDG+NPNLY H EDVILCVLP+FHIY+LNS++
Sbjct: 183 LPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIM 242
Query: 247 LCALRVGAAILIMQKFDIVKLMELVQKYKVTVAPFVPPIVLAVAKSGDVDKYDMSSIRTV 306
LC LRVGA ILIM KF+I L+ L++KYKV++AP VPP+++++AKS D+DK+D+SS+R +
Sbjct: 243 LCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDKHDLSSLRMI 302
Query: 307 MSGAAPMGKELEDAVRAKLPHAKLGQGYGMTEAGPVLSMCLAFAKEPFEIKSGACGTVVR 366
SG AP+GKELED VRAK P A+LGQGYGMTEAGPVL+MCLAFAKEPF+IK GACGTVVR
Sbjct: 303 KSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVR 362
Query: 367 NAEMKIVDPDTGISLPRNQAGEICIRGAQIMKG 399
NAEMKIVDP+TG SLPRNQ GEICIRG QIMKG
Sbjct: 363 NAEMKIVDPETGASLPRNQPGEICIRGDQIMKG 395
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 561 bits (1447), Expect = e-160, Method: Compositional matrix adjust.
Identities = 274/405 (67%), Positives = 317/405 (78%), Gaps = 7/405 (1%)
Query: 2 EAKQDHQEFIFRSKLPDIYIPNHLPLHTYCFENISQFADRPCIINGPTGDVYTYADVELT 61
++ ++ + IFRSKLPDIYIPNHL LH Y F+NIS+FA +PC+INGPTG VYTY+DV +
Sbjct: 38 QSNNNNSDVIFRSKLPDIYIPNHLSLHDYIFQNISEFATKPCLINGPTGHVYTYSDVHVI 97
Query: 62 SRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPFYTPPEXXXXXX 121
SR++AA KLGV + DV+MLLL NCP+FV +FL AS+ GAT+T ANPF+TP E
Sbjct: 98 SRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAK 157
Query: 122 XXXXXXXXXXXVYNDKVRDLSEHHGARIVTID-----PPPENCLHFSELITQADENE--I 174
Y DK++ L G IV ID P PE CL F+EL E I
Sbjct: 158 ASNTKLIITEARYVDKIKPLQNDDGVVIVCIDDNESVPIPEGCLRFTELTQSTTEASEVI 217
Query: 175 PAVKINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVL 234
+V+I+PDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLY H +DVILCVL
Sbjct: 218 DSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVL 277
Query: 235 PLFHIYSLNSVLLCALRVGAAILIMQKFDIVKLMELVQKYKVTVAPFVPPIVLAVAKSGD 294
P+FHIY+LNS++LC LRVGAAILIM KF+I L+EL+Q+ KVTVAP VPPIVLA+AKS +
Sbjct: 278 PMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSE 337
Query: 295 VDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGYGMTEAGPVLSMCLAFAKEPF 354
+KYD+SSIR V SGAAP+GKELEDAV AK P+AKLGQGYGMTEAGPVL+M L FAKEPF
Sbjct: 338 TEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPF 397
Query: 355 EIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQIMKG 399
+KSGACGTVVRNAEMKIVDPDTG SL RNQ GEICIRG QIMKG
Sbjct: 398 PVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIRGHQIMKG 442
>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform
pdb|1LCI|A Chain A, Firefly Luciferase
pdb|3RIX|A Chain A, 1.7a Resolution Structure Of A Firefly
Luciferase-Aspulvinone J Inhibitor Complex
pdb|4E5D|A Chain A, 2.2a Resolution Structure Of A Firefly
Luciferase-Benzothiazole Inhibitor Complex
Length = 550
Score = 132 bits (331), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 106/359 (29%), Positives = 165/359 (45%), Gaps = 23/359 (6%)
Query: 54 TYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPFYTP 113
TYA+ S ++A + + G+ I++ +N QF LGA +IG AN Y
Sbjct: 52 TYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNE 111
Query: 114 PEXXXXXXXXXXXXXXXXXVYNDKVRDLSEHHG--ARIVTIDPPP-----ENCLHF--SE 164
E K+ ++ + +I+ +D ++ F S
Sbjct: 112 RELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSH 171
Query: 165 LITQADENEIPAVKINPDDVVALPY-SSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLY 223
L +E + + D +AL SSG+TGLPKGV L H+ + D N
Sbjct: 172 LPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQI 231
Query: 224 LHKEDVILCVLPLFHIYSLNSVL---LCALRVGAAILIMQKFDIVKLMELVQKYKVTVAP 280
+ + IL V+P H + + + L +C RV ++M +F+ + +Q YK+ A
Sbjct: 232 I-PDTAILSVVPFHHGFGMFTTLGYLICGFRV----VLMYRFEEELFLRSLQDYKIQSAL 286
Query: 281 FVPPIVLAVAKSGDVDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGYGMTEAG 340
VP + AKS +DKYD+S++ + SG AP+ KE+ +AV + + QGYG+TE
Sbjct: 287 LVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETT 346
Query: 341 PVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQIMKG 399
+ + +P GA G VV E K+VD DTG +L NQ GE+C+RG IM G
Sbjct: 347 SAILITPEGDDKP-----GAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSG 400
>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
pdb|4G36|B Chain B, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
Length = 555
Score = 131 bits (330), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 106/359 (29%), Positives = 165/359 (45%), Gaps = 23/359 (6%)
Query: 54 TYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPFYTP 113
TYA+ S ++A + + G+ I++ +N QF LGA +IG AN Y
Sbjct: 57 TYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNE 116
Query: 114 PEXXXXXXXXXXXXXXXXXVYNDKVRDLSEHHG--ARIVTIDPPP-----ENCLHF--SE 164
E K+ ++ + +I+ +D ++ F S
Sbjct: 117 RELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSH 176
Query: 165 LITQADENEIPAVKINPDDVVALPY-SSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLY 223
L +E + + D +AL SSG+TGLPKGV L H+ + D N
Sbjct: 177 LPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQI 236
Query: 224 LHKEDVILCVLPLFHIYSLNSVL---LCALRVGAAILIMQKFDIVKLMELVQKYKVTVAP 280
+ + IL V+P H + + + L +C RV ++M +F+ + +Q YK+ A
Sbjct: 237 I-PDTAILSVVPFHHGFGMFTTLGYLICGFRV----VLMYRFEEELFLRSLQDYKIQSAL 291
Query: 281 FVPPIVLAVAKSGDVDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGYGMTEAG 340
VP + AKS +DKYD+S++ + SG AP+ KE+ +AV + + QGYG+TE
Sbjct: 292 LVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETT 351
Query: 341 PVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQIMKG 399
+ + +P GA G VV E K+VD DTG +L NQ GE+C+RG IM G
Sbjct: 352 SAILITPEGDDKP-----GAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSG 405
>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form)
pdb|3IER|A Chain A, Firefly Luciferase Apo Structure (P41 Form) With Peg 400
Bound
pdb|3IES|A Chain A, Firefly Luciferase Inhibitor Complex
Length = 551
Score = 131 bits (330), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 106/359 (29%), Positives = 165/359 (45%), Gaps = 23/359 (6%)
Query: 54 TYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPFYTP 113
TYA+ S ++A + + G+ I++ +N QF LGA +IG AN Y
Sbjct: 52 TYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNE 111
Query: 114 PEXXXXXXXXXXXXXXXXXVYNDKVRDLSEHHG--ARIVTIDPPP-----ENCLHF--SE 164
E K+ ++ + +I+ +D ++ F S
Sbjct: 112 RELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSH 171
Query: 165 LITQADENEIPAVKINPDDVVALPY-SSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLY 223
L +E + + D +AL SSG+TGLPKGV L H+ + D N
Sbjct: 172 LPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQI 231
Query: 224 LHKEDVILCVLPLFHIYSLNSVL---LCALRVGAAILIMQKFDIVKLMELVQKYKVTVAP 280
+ + IL V+P H + + + L +C RV ++M +F+ + +Q YK+ A
Sbjct: 232 I-PDTAILSVVPFHHGFGMFTTLGYLICGFRV----VLMYRFEEELFLRSLQDYKIQSAL 286
Query: 281 FVPPIVLAVAKSGDVDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGYGMTEAG 340
VP + AKS +DKYD+S++ + SG AP+ KE+ +AV + + QGYG+TE
Sbjct: 287 LVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETT 346
Query: 341 PVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQIMKG 399
+ + +P GA G VV E K+VD DTG +L NQ GE+C+RG IM G
Sbjct: 347 SAILITPEGDDKP-----GAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSG 400
>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris
Turkestanicus Luciferase
Length = 582
Score = 130 bits (326), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 85/212 (40%), Positives = 118/212 (55%), Gaps = 10/212 (4%)
Query: 190 SSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSLNSVLLCA 249
SSG+TGLPKGV LTHK + + D N + + IL V+P H + + + L
Sbjct: 232 SSGSTGLPKGVELTHKNICVRFSHCRDPVFGNQII-PDTAILTVIPFHHGFGMFTTL-GY 289
Query: 250 LRVGAAILIMQKFDIVKLMELVQKYKVTVAPFVPPIVLAVAKSGDVDKYDMSSIRTVMSG 309
L G I++M +F+ + +Q YK+ A VP + AKS VDKYD+S++ + SG
Sbjct: 290 LTCGFRIVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLVDKYDLSNLHEIASG 349
Query: 310 AAPMGKELEDAV--RAKLPHAKLGQGYGMTEAGPVLSMCLAFAKEPFEIKSGACGTVVRN 367
AP+ KE+ +AV R KLP + QGYG+TE + + + K GACG VV
Sbjct: 350 GAPLAKEVGEAVAKRFKLPGIR--QGYGLTET----TSAIIITPRGRDDKPGACGKVVPF 403
Query: 368 AEMKIVDPDTGISLPRNQAGEICIRGAQIMKG 399
KIVD DTG +L NQ GE+C++G IMKG
Sbjct: 404 FSAKIVDLDTGKTLGVNQRGELCVKGPMIMKG 435
>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
pdb|4G37|B Chain B, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
Length = 555
Score = 129 bits (323), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 105/356 (29%), Positives = 165/356 (46%), Gaps = 17/356 (4%)
Query: 54 TYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPFYTP 113
TYA+ S ++A + + G+ I++ +N QF LGA +IG AN Y
Sbjct: 57 TYAEYFEMSVRLAEAMKRYGLNTNHRIVVSSENSLQFFMPVLGALFIGVAVAPANDCYNE 116
Query: 114 PEXXXXXXXXXXXXXXXXXVYNDKVRDLSEHHG--ARIVTIDPPP-----ENCLHF--SE 164
E K+ ++ + +I+ +D ++ F S
Sbjct: 117 RELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSH 176
Query: 165 LITQADENEIPAVKINPDDVVALPY-SSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLY 223
L +E + + D +AL SSG+TGLPKGV L H+ L + D N
Sbjct: 177 LPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRALAVRFSHARDPIFGN-Q 235
Query: 224 LHKEDVILCVLPLFHIYSLNSVLLCALRVGAAILIMQKFDIVKLMELVQKYKVTVAPFVP 283
+ + IL V+P H + + + L L G +++M +F+ + +Q YK+ A VP
Sbjct: 236 IAPDTAILSVVPFHHGFGMFTTL-GYLISGFRVVLMYRFEEELFLRSLQDYKIQSALLVP 294
Query: 284 PIVLAVAKSGDVDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGYGMTEAGPVL 343
+ +AKS +DKYD+S++ + SG AP+ KE+ +AV + + QGYG+TE +
Sbjct: 295 TLFSFLAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAI 354
Query: 344 SMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQIMKG 399
+ +P GA G VV E K+VD DTG +L NQ GE+ +RG IM G
Sbjct: 355 LITPKGDDKP-----GAVGKVVPFFEAKVVDLDTGKTLGVNQRGELSVRGPMIMSG 405
>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Mgatp
pdb|2D1R|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Oxyluciferin And Amp
Length = 548
Score = 127 bits (318), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 106/367 (28%), Positives = 166/367 (45%), Gaps = 23/367 (6%)
Query: 46 NGPTGDVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGATST 105
N TG Y+YA+ S + L G+ I L +NC +F + +IG
Sbjct: 46 NAVTGVDYSYAEYLEKSXXLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVA 105
Query: 106 TANPFYTPPEXXXXXXXXXXXXXXXXXVYNDKVRDLSEH-HGARIVTIDPPPENCLHFSE 164
N YT E DKV + + + + I + +
Sbjct: 106 PTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYRGYQC 165
Query: 165 LITQADENEIPA--------VKINPDDVVALPY-SSGTTGLPKGVMLTHKGLVTSVAQQV 215
L T N P V+++ + VAL SSG+TGLPKGV LTH+ +VT +
Sbjct: 166 LDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHAR 225
Query: 216 DGENPNLYLHKEDVILCVLPLFHIYSLNSVL---LCALRVGAAILIMQKFDIVKLMELVQ 272
D N + +L V+P H + + + L +C RV +++ KFD ++ +Q
Sbjct: 226 DPIYGN-QVSPGTAVLTVVPFHHGFGMFTTLGYLICGFRV----VMLTKFDEETFLKTLQ 280
Query: 273 KYKVTVAPFVPPIVLAVAKSGDVDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQ 332
YK T VP + + KS ++KYD+S++ + SG AP+ KE+ +AV + + Q
Sbjct: 281 DYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQ 340
Query: 333 GYGMTEAGPVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIR 392
GYG+TE + + +P GA G VV + K++D DT SL N+ GE+C++
Sbjct: 341 GYGLTETTSAIIITPEGDDKP-----GASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVK 395
Query: 393 GAQIMKG 399
G +MKG
Sbjct: 396 GPMLMKG 402
>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With High-Energy Intermediate
Analogue
Length = 548
Score = 125 bits (315), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 106/367 (28%), Positives = 166/367 (45%), Gaps = 23/367 (6%)
Query: 46 NGPTGDVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGATST 105
N TG Y+YA+ S + L G+ I L +NC +F + +IG
Sbjct: 46 NAVTGVDYSYAEYLEKSCXLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVA 105
Query: 106 TANPFYTPPEXXXXXXXXXXXXXXXXXVYNDKVRDLSEH-HGARIVTIDPPPENCLHFSE 164
N YT E DKV + + + + I + +
Sbjct: 106 PTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYRGYQC 165
Query: 165 LITQADENEIPA--------VKINPDDVVALPY-SSGTTGLPKGVMLTHKGLVTSVAQQV 215
L T N P V+++ + VAL SSG+TGLPKGV LTH+ +VT +
Sbjct: 166 LDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHAR 225
Query: 216 DGENPNLYLHKEDVILCVLPLFHIYSLNSVL---LCALRVGAAILIMQKFDIVKLMELVQ 272
D N + +L V+P H + + + L +C RV +++ KFD ++ +Q
Sbjct: 226 DPIYGN-QVSPGTAVLTVVPFHHGFGMFTTLGYLICGFRV----VMLTKFDEETFLKTLQ 280
Query: 273 KYKVTVAPFVPPIVLAVAKSGDVDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQ 332
YK T VP + + KS ++KYD+S++ + SG AP+ KE+ +AV + + Q
Sbjct: 281 DYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQ 340
Query: 333 GYGMTEAGPVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIR 392
GYG+TE + + +P GA G VV + K++D DT SL N+ GE+C++
Sbjct: 341 GYGLTETTSAIIITPEGDDKP-----GASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVK 395
Query: 393 GAQIMKG 399
G +MKG
Sbjct: 396 GPMLMKG 402
>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Red-Color Emission S286n Mutant Complexed
With High-Energy Intermediate Analogue
Length = 548
Score = 125 bits (314), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 106/367 (28%), Positives = 166/367 (45%), Gaps = 23/367 (6%)
Query: 46 NGPTGDVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGATST 105
N TG Y+YA+ S + L G+ I L +NC +F + +IG
Sbjct: 46 NAVTGVDYSYAEYLEKSCXLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVA 105
Query: 106 TANPFYTPPEXXXXXXXXXXXXXXXXXVYNDKVRDLSEH-HGARIVTIDPPPENCLHFSE 164
N YT E DKV + + + + I + +
Sbjct: 106 PTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYRGYQC 165
Query: 165 LITQADENEIPA--------VKINPDDVVALPY-SSGTTGLPKGVMLTHKGLVTSVAQQV 215
L T N P V+++ + VAL SSG+TGLPKGV LTH+ +VT +
Sbjct: 166 LDTFIKRNTPPGYQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHAR 225
Query: 216 DGENPNLYLHKEDVILCVLPLFHIYSLNSVL---LCALRVGAAILIMQKFDIVKLMELVQ 272
D N + +L V+P H + + + L +C RV +++ KFD ++ +Q
Sbjct: 226 DPIYGN-QVSPGTAVLTVVPFHHGFGMFTTLGYLICGFRV----VMLTKFDEETFLKTLQ 280
Query: 273 KYKVTVAPFVPPIVLAVAKSGDVDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQ 332
YK T VP + + KS ++KYD+S++ + SG AP+ KE+ +AV + + Q
Sbjct: 281 DYKCTNVILVPTLFAILNKSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQ 340
Query: 333 GYGMTEAGPVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIR 392
GYG+TE + + +P GA G VV + K++D DT SL N+ GE+C++
Sbjct: 341 GYGLTETTSAIIITPEGDDKP-----GASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVK 395
Query: 393 GAQIMKG 399
G +MKG
Sbjct: 396 GPMLMKG 402
>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis
pdb|3T5C|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
pdb|3T5C|B Chain B, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
Length = 396
Score = 106 bits (264), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 99/366 (27%), Positives = 172/366 (46%), Gaps = 36/366 (9%)
Query: 48 PTGDV-YTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGATSTT 106
P+ DV TYA + + + A L+ LG+ KGD + LL+ N +F F GA+ +GA +
Sbjct: 24 PSTDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVP 83
Query: 107 ANPFYTPPEXXXXXXXXXXXXXXXXXVYN-------DKVRDLSEHHGARIVTIDPPPENC 159
N PE +Y D +R ++ G I
Sbjct: 84 INTRLAAPEVSFILSDSGSKVV----IYGAPSAPVIDAIRAQADPPGTVTDWI-----GA 134
Query: 160 LHFSELITQADENEIPAVKINPDDVVALPYSSGTTGLPKGVMLTHKGL---VTSVAQQVD 216
+E + A +E PAV+ DD + + Y+SGTTG PKGV+ TH+ + +S A +D
Sbjct: 135 DSLAERLRSAAADE-PAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTID 193
Query: 217 GENPNLYLHKEDVILCVLPLFHIYSLNSVLLCALRVGAAILIMQKFDIVKLMELVQKYKV 276
+ D +L LP+FH+ +L +V+ A+R G ++ M +FD K+ L+ + +V
Sbjct: 194 -------VRYRDRLLLPLPMFHVAALTTVIFSAMR-GVTLISMPQFDATKVWSLIVEERV 245
Query: 277 TVAPFVPPIVLAVAKSGDVDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGYGM 336
+ VP I+ + + + + D R ++G APM + L AK + ++ QGY +
Sbjct: 246 CIGGAVPAILNFMRQVPEFAELDAPDFRYFITGGAPMPEALIKIYAAK--NIEVVQGYAL 303
Query: 337 TEAGPVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQI 396
TE+ ++ L+ E K+G+ G ++ V D G+ + + GE+ I+ +
Sbjct: 304 TESCGGGTLLLS---EDALRKAGSAGRATMFTDVA-VRGDDGV-IREHGEGEVVIKSDIL 358
Query: 397 MKGTYH 402
+K ++
Sbjct: 359 LKEYWN 364
>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase
Length = 517
Score = 106 bits (264), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 99/366 (27%), Positives = 172/366 (46%), Gaps = 36/366 (9%)
Query: 48 PTGDV-YTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGATSTT 106
P+ DV TYA + + + A L+ LG+ KGD + LL+ N +F F GA+ +GA +
Sbjct: 38 PSTDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVP 97
Query: 107 ANPFYTPPEXXXXXXXXXXXXXXXXXVYN-------DKVRDLSEHHGARIVTIDPPPENC 159
N PE +Y D +R ++ G I
Sbjct: 98 INTRLAAPEVSFILSDSGSKVV----IYGAPSAPVIDAIRAQADPPGTVTDWI-----GA 148
Query: 160 LHFSELITQADENEIPAVKINPDDVVALPYSSGTTGLPKGVMLTHKGL---VTSVAQQVD 216
+E + A +E PAV+ DD + + Y+SGTTG PKGV+ TH+ + +S A +D
Sbjct: 149 DSLAERLRSAAADE-PAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTID 207
Query: 217 GENPNLYLHKEDVILCVLPLFHIYSLNSVLLCALRVGAAILIMQKFDIVKLMELVQKYKV 276
+ D +L LP+FH+ +L +V+ A+R G ++ M +FD K+ L+ + +V
Sbjct: 208 -------VRYRDRLLLPLPMFHVAALTTVIFSAMR-GVTLISMPQFDATKVWSLIVEERV 259
Query: 277 TVAPFVPPIVLAVAKSGDVDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGYGM 336
+ VP I+ + + + + D R ++G APM + L AK + ++ QGY +
Sbjct: 260 CIGGAVPAILNFMRQVPEFAELDAPDFRYFITGGAPMPEALIKIYAAK--NIEVVQGYAL 317
Query: 337 TEAGPVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQI 396
TE+ ++ L+ E K+G+ G ++ V D G+ + + GE+ I+ +
Sbjct: 318 TESCGGGTLLLS---EDALRKAGSAGRATMFTDVA-VRGDDGV-IREHGEGEVVIKSDIL 372
Query: 397 MKGTYH 402
+K ++
Sbjct: 373 LKEYWN 378
>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1ULT|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
Length = 541
Score = 105 bits (261), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 101/405 (24%), Positives = 177/405 (43%), Gaps = 34/405 (8%)
Query: 16 LPDIYIPNHLPLHTYCFENISQFADRPCIINGPTGDVY--TYADVELTSRKVAAGLSKLG 73
P + L L + + F + + TG+V+ TYA+V +R++ GL LG
Sbjct: 9 FPSTMMDEELNLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALG 68
Query: 74 VQKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPFYTPPEXXXXXXXXXXXXXXXXXV 133
V GD + L N + + A+ +GA TANP +P E +
Sbjct: 69 VGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKE----IAYILNHAEDKVLL 124
Query: 134 YNDKVRDLSEHHGARIVTI-------DPPPENCLHFSELITQADENEIPAVKINPDDVVA 186
++ + L E + T+ + PE L + E + + E V++
Sbjct: 125 FDPNLLPLVEAIRGELKTVQHFVVMDEKAPEGYLAYEEALGE----EADPVRVPERAACG 180
Query: 187 LPYSSGTTGLPKGVMLTHKGLV--TSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSLNS 244
+ Y++GTTGLPKGV+ +H+ LV + A VDG L ++DV+L V+P+FH+ +
Sbjct: 181 MAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTA----LSEKDVVLPVVPMFHVNAWCL 236
Query: 245 VLLCALRVGAAILIMQKFDIVKLMELVQKYKVTVAPFVPPIVLAVAKSGDVDKYDMSSIR 304
L +L + D L+EL VT VP + LA+A + + + ++R
Sbjct: 237 PYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLR 296
Query: 305 TVMSGAAPMGKELEDAVRAKLPHAKLGQGYGMTEAGPVL------SMCLAFAKEPFEIKS 358
++ G + + L R + ++ QGYG+TE PV+ S + ++E
Sbjct: 297 RLVVGGSAAPRSL--IARFERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLK 354
Query: 359 GACGTVVRNAEMKIVDPDTGISLPRNQA--GEICIRGAQIMKGTY 401
G + +++ D + G +P++ GE+ ++G I G Y
Sbjct: 355 AKTGLPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGGYY 398
>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
pdb|3G7S|B Chain B, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
Length = 549
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 108/409 (26%), Positives = 171/409 (41%), Gaps = 30/409 (7%)
Query: 9 EFIFRSKLPDIYIPNHLPLHTYCFENISQFADRPCIINGPTG------DVYTYADVELTS 62
E ++ P +Y P + L +F ++ II+ + + ++ +
Sbjct: 4 ELKYKIGFPSLYYPK-ISLADRIDAAAEKFGEKTAIISAEPKFPSEFPESXNFLEICEVT 62
Query: 63 RKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPFYTPPEXXXXXXX 122
+K+A+G+S+ GV+KG+ + + + N +V + AT NP Y E
Sbjct: 63 KKLASGISRKGVRKGEHVGVCIPNSIDYVXTIYALWRVAATPVPINPXYKSFELEHILND 122
Query: 123 XXXXXXXXXXVYNDKVRDLSEHHGARIVTIDPPPENCLHFSELITQADENEIPAVKINPD 182
+ + + E G V + N L SE+ E+ VK+NP+
Sbjct: 123 SEATTLVVHSXLYENFKPVLEKTGVERVFVVGGEVNSL--SEVXDSGSED-FENVKVNPE 179
Query: 183 DVVAL-PYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYS 241
+ VAL PY+ GTTG PKGV LTH L + Q L D I+ P FH
Sbjct: 180 EDVALIPYTGGTTGXPKGVXLTHFNLAANALQLAVATG----LSHXDTIVGCXPXFHSAE 235
Query: 242 LNSVLLCALRVGAAILIMQKFDIVKLMELVQKYKVTVAPFVPPI--VLAVAKSGDVDKYD 299
V L + VG ++ F+ L E ++KYK T + VPP VL YD
Sbjct: 236 FGLVNL-XVTVGNEYVVXGXFNQEXLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYD 294
Query: 300 MSSIRTVMSGAAPMGKELED------AVRAKLPHAKLGQGYGMTEAGPVLSMCLAFAKEP 353
S ++ +GA P+ L + A + P + Q +G TEA P ++ P
Sbjct: 295 WSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGXTEACPXVT-----TNPP 349
Query: 354 FEI-KSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQIMKGTY 401
+ KS G + E+K++ + G L ++GEI IRG I KG +
Sbjct: 350 LRLDKSTTQGVPXSDIELKVISLEDGRELGVGESGEIVIRGPNIFKGYW 398
>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|B Chain B, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|C Chain C, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|D Chain D, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 90/358 (25%), Positives = 143/358 (39%), Gaps = 15/358 (4%)
Query: 45 INGPTGDVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGATS 104
I GD +YA++ + +VA L G+Q GD + + + + +L G
Sbjct: 21 IETAAGDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVY 80
Query: 105 TTANPFYTPPEXXXXXXXXXXXXXXXXXVYNDKVRDLSEHHGARIVTIDPPPENCLHFSE 164
N YT E D + ++ GA + T+ P L +
Sbjct: 81 LPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVGATVETLGPDGRGSLTDAA 140
Query: 165 LITQADENEIPAVKINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYL 224
I DD+ A+ Y+SGTTG KG L+H L ++ VD
Sbjct: 141 AGASEAFATIDR---GADDLAAILYTSGTTGRSKGAXLSHDNLASNSLTLVD----YWRF 193
Query: 225 HKEDVILCVLPLFHIYSLNSVLLCALRVGAAILIMQKFDIVKLMELVQKYKVTVAPFVPP 284
+DV++ LP++H + L L + + + KFD K+++L + TV VP
Sbjct: 194 TPDDVLIHALPIYHTHGLFVASNVTLFARGSXIFLPKFDPDKILDLXAR--ATVLXGVPT 251
Query: 285 IVLAVAKSGDVDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGYGMTEAGPVLS 344
+ +S + K R +SG+AP+ + AK HA L + YG TE S
Sbjct: 252 FYTRLLQSPRLTKETTGHXRLFISGSAPLLADTHREWSAKTGHAVL-ERYGXTETNXNTS 310
Query: 345 MCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQIMKGTYH 402
+ P GA G + ++ DP+TG LPR G I ++G + KG +
Sbjct: 311 NPYDGDRVP-----GAVGPALPGVSARVTDPETGKELPRGDIGXIEVKGPNVFKGYWR 363
>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate
pdb|1MDF|A Chain A, Crystal Structure Of Dhbe In Absence Of Substrate
Length = 539
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 92/376 (24%), Positives = 158/376 (42%), Gaps = 22/376 (5%)
Query: 33 ENISQFADRPCIINGPTGDVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVF 92
+ +++ DR I G T ++Y +++ + ++AAG KLG+Q+ D +++ L N +F
Sbjct: 33 DRAAKYGDRIAITCGNTH--WSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFE 90
Query: 93 AFLGASYIGATSTTANPFYTPPEXXXXXXXXXXXXXXXXXVYND-KVRDLSEHHGARIVT 151
+GA A P + E Y+ R L+ +++ T
Sbjct: 91 VIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPT 150
Query: 152 IDP-----PPENCLHFSELITQADENEIPAVKINPDDVVALPYSSGTTGLPKGVMLTHKG 206
+ E L +L T+ ++P VK + DV L S G+TGL K + TH
Sbjct: 151 LKNIIVAGEAEEFLPLEDLHTEP--VKLPEVKSS--DVAFLQLSGGSTGLSKLIPRTHDD 206
Query: 207 LVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSLNS-VLLCALRVGAAILIMQKFDIV 265
+ S+ + V+ +L V L LP+ H Y L+S +L L G +++
Sbjct: 207 YIYSLKRSVE----VCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPSPSPD 262
Query: 266 KLMELVQKYKVTVAPFVPPIVLAVAKSGDVDKYDMSSIRTVMSGAAPMGKELEDAVRAKL 325
L+++ KVT+ VPP+ + + + D+SS++ + G A E V+A
Sbjct: 263 DAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVF 322
Query: 326 PHAKLGQGYGMTEAGPVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQ 385
L Q +GM E G V L +P EI G + + V D + +
Sbjct: 323 -GCTLQQVFGMAE-GLVNYTRL---DDPEEIIVNTQGKPMSPYDESRVWDDHDRDVKPGE 377
Query: 386 AGEICIRGAQIMKGTY 401
G + RG ++G Y
Sbjct: 378 TGHLLTRGPYTIRGYY 393
>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
pdb|2V7B|B Chain B, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
Length = 529
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 88/347 (25%), Positives = 146/347 (42%), Gaps = 18/347 (5%)
Query: 54 TYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPFYTP 113
TY ++E +R+ A+ L LGV + I+L++ + AFLGA Y G AN TP
Sbjct: 50 TYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVPVVANTLLTP 109
Query: 114 PEXXXXXXXXXXXXXXXXXVYNDKVR---DLSEHHGARIVTIDP---PPENCLHFSELIT 167
+ V + +EH G +++ P P F ELI
Sbjct: 110 ADYVYMLTHSHARAVIASGALVQNVTQALESAEHDGCQLIVSQPRESEPRLAPLFEELI- 168
Query: 168 QADENEIPAVKINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKE 227
A A DD+ YSSG+TG PKG + TH L + P L + +
Sbjct: 169 DAAAPAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYA---KPILGIAEN 225
Query: 228 DVILCVLPLFHIYSLNSVLLCALRVGA-AILIMQKFDIVKLMELVQKYKVTVAPFVPPIV 286
DV+ LF Y L + L L VGA AIL+ ++ + + +++ TV VP +
Sbjct: 226 DVVFSAAKLFFAYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLY 285
Query: 287 LAVAKSGDVDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGYGMTEAGPVLSMC 346
+ S ++ +IR S + +E+ + A ++ G G TE +
Sbjct: 286 ANMLVSPNLPARADVAIRICTSAGEALPREIGERFTAHF-GCEILDGIGSTEM-----LH 339
Query: 347 LAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRG 393
+ + ++ G G V E+++ D + G ++P + G++ I+G
Sbjct: 340 IFLSNRAGAVEYGTTGRPVPGYEIELRD-EAGHAVPDGEVGDLYIKG 385
>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3
Length = 503
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 89/379 (23%), Positives = 149/379 (39%), Gaps = 17/379 (4%)
Query: 27 LHTYCFENISQFADRP--CIINGPTGDVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLL 84
++ F + D P I GD +YA++ + +VA L G+Q GD +
Sbjct: 1 MNANLFARLFDXLDDPHXLAIETAAGDXISYAELVARAGRVANVLVARGLQVGDRVAAQT 60
Query: 85 QNCPQFVFAFLGASYIGATSTTANPFYTPPEXXXXXXXXXXXXXXXXXVYNDKVRDLSEH 144
+ + + +L G N YT E D + ++
Sbjct: 61 EXSVEALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPXIVVCDPSXRDGIAAIAAX 120
Query: 145 HGARIVTIDPPPENCLHFSELITQADENEIPAVKINPDDVVALPYSSGTTGLPKGVMLTH 204
GA + T+ P L + I DD+ A+ Y+SGTTG G ML+H
Sbjct: 121 VGATVETLGPDGRGSLTDAAAGASEAFATI---DRGADDLAAILYTSGTTGRSXGAMLSH 177
Query: 205 KGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSLNSVLLCALRVGAAILIMQKFDI 264
L ++ VD +DV++ LP++H + L L +++ + FD
Sbjct: 178 DNLASNSLTLVD----YWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPXFDP 233
Query: 265 VKLMELVQKYKVTVAPFVPPIVLAVAKSGDVDKYDMSSIRTVMSGAAPMGKELEDAVRAK 324
+++L+ + V + VP + +S + +R +SG+AP+ + A
Sbjct: 234 DXILDLMARATVLMG--VPTFYTRLLQSPRLTXETTGHMRLFISGSAPLLADTHREWSAX 291
Query: 325 LPHAKLGQGYGMTEAGPVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRN 384
HA L + YGMTE S + P GA G + ++ DP+TG LPR
Sbjct: 292 TGHAVL-ERYGMTETNMNTSNPYDGDRVP-----GAVGPALPGVSARVTDPETGXELPRG 345
Query: 385 QAGEICIRGAQIMKGTYHI 403
G I + G + G + +
Sbjct: 346 DIGMIEVXGPNVFXGYWRM 364
>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|B Chain B, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|C Chain C, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
Length = 506
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 89/379 (23%), Positives = 149/379 (39%), Gaps = 17/379 (4%)
Query: 27 LHTYCFENISQFADRP--CIINGPTGDVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLL 84
++ F + D P I GD +YA++ + +VA L G+Q GD +
Sbjct: 1 MNANLFARLFDXLDDPHXLAIETAAGDXISYAELVARAGRVANVLVARGLQVGDRVAAQT 60
Query: 85 QNCPQFVFAFLGASYIGATSTTANPFYTPPEXXXXXXXXXXXXXXXXXVYNDKVRDLSEH 144
+ + + +L G N YT E D + ++
Sbjct: 61 EXSVEALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPXIVVCDPSXRDGIAAIAAX 120
Query: 145 HGARIVTIDPPPENCLHFSELITQADENEIPAVKINPDDVVALPYSSGTTGLPKGVMLTH 204
GA + T+ P L + I DD+ A+ Y+SGTTG G ML+H
Sbjct: 121 VGATVETLGPDGRGSLTDAAAGASEAFATI---DRGADDLAAILYTSGTTGRSXGAMLSH 177
Query: 205 KGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSLNSVLLCALRVGAAILIMQKFDI 264
L ++ VD +DV++ LP++H + L L +++ + FD
Sbjct: 178 DNLASNSLTLVD----YWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPXFDP 233
Query: 265 VKLMELVQKYKVTVAPFVPPIVLAVAKSGDVDKYDMSSIRTVMSGAAPMGKELEDAVRAK 324
+++L+ + V + VP + +S + +R +SG+AP+ + A
Sbjct: 234 DXILDLMARATVLMG--VPTFYTRLLQSPRLTXETTGHMRLFISGSAPLLADTHREWSAX 291
Query: 325 LPHAKLGQGYGMTEAGPVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRN 384
HA L + YGMTE S + P GA G + ++ DP+TG LPR
Sbjct: 292 TGHAVL-ERYGMTETNMNTSNPYDGDRVP-----GAVGPALPGVSARVTDPETGXELPRG 345
Query: 385 QAGEICIRGAQIMKGTYHI 403
G I + G + G + +
Sbjct: 346 DIGMIEVXGPNVFXGYWRM 364
>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 82.4 bits (202), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 89/379 (23%), Positives = 149/379 (39%), Gaps = 17/379 (4%)
Query: 27 LHTYCFENISQFADRP--CIINGPTGDVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLL 84
++ F + D P I GD +YA++ + +VA L G+Q GD +
Sbjct: 1 MNANLFARLFDXLDDPHXLAIETAAGDXISYAELVARAGRVANVLVARGLQVGDRVAAQT 60
Query: 85 QNCPQFVFAFLGASYIGATSTTANPFYTPPEXXXXXXXXXXXXXXXXXVYNDKVRDLSEH 144
+ + + +L G N YT E D + ++
Sbjct: 61 EXSVEALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPXIVVCDPSXRDGIAAIAAX 120
Query: 145 HGARIVTIDPPPENCLHFSELITQADENEIPAVKINPDDVVALPYSSGTTGLPKGVMLTH 204
GA + T+ P L + I DD+ A+ Y+SGTTG G ML+H
Sbjct: 121 VGATVETLGPDGRGSLTDAAAGASEAFATI---DRGADDLAAILYTSGTTGRSXGAMLSH 177
Query: 205 KGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSLNSVLLCALRVGAAILIMQKFDI 264
L ++ VD +DV++ LP++H + L L +++ + FD
Sbjct: 178 DNLASNSLTLVD----YWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPXFDP 233
Query: 265 VKLMELVQKYKVTVAPFVPPIVLAVAKSGDVDKYDMSSIRTVMSGAAPMGKELEDAVRAK 324
+++L+ + V + VP + +S + +R +SG+AP+ + A
Sbjct: 234 DXILDLMARATVLMG--VPTFYTRLLQSPRLTXETTGHMRLFISGSAPLLADTHREWSAX 291
Query: 325 LPHAKLGQGYGMTEAGPVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRN 384
HA L + YGMTE S + P GA G + ++ DP+TG LPR
Sbjct: 292 TGHAVL-ERYGMTETNMNTSNPYDGDRVP-----GAVGPALPGVSARVTDPETGXELPRG 345
Query: 385 QAGEICIRGAQIMKGTYHI 403
G I + G + G + +
Sbjct: 346 DIGMIEVXGPNVFXGYWRM 364
>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp
Length = 539
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 91/376 (24%), Positives = 154/376 (40%), Gaps = 22/376 (5%)
Query: 33 ENISQFADRPCIINGPTGDVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVF 92
+ +++ DR I G T ++Y +++ + ++AAG KLG+Q+ D +++ L N +F
Sbjct: 33 DRAAKYGDRIAITCGNTH--WSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFE 90
Query: 93 AFLGASYIGATSTTANPFYTPPEXXXXXXXXXXXXXXXXXVYND-KVRDLSEHHGARIVT 151
+GA A P + E Y+ R L+ +++ T
Sbjct: 91 VIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPT 150
Query: 152 IDP-----PPENCLHFSELITQADENEIPAVKINPDDVVALPYSSGTTGLPKGVMLTHKG 206
+ E L +L T+ ++P VK + DV L S G+TGL K + TH
Sbjct: 151 LKNIIVAGEAEEFLPLEDLHTEP--VKLPEVKSS--DVAFLQLSGGSTGLSKLIPRTHDD 206
Query: 207 LVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSLNS-VLLCALRVGAAILIMQKFDIV 265
+ S+ + V+ +L V L LP H Y L+S +L L G +++
Sbjct: 207 YIYSLKRSVE----VCWLDHSTVYLAALPXAHNYPLSSPGVLGVLYAGGRVVLSPSPSPD 262
Query: 266 KLMELVQKYKVTVAPFVPPIVLAVAKSGDVDKYDMSSIRTVMSGAAPMGKELEDAVRAKL 325
L+++ KVT+ VPP+ + + D+SS++ + G A E V+A
Sbjct: 263 DAFPLIEREKVTITALVPPLAXVWXDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVF 322
Query: 326 PHAKLGQGYGMTEAGPVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQ 385
L Q +G E G V L +P EI G + V D + +
Sbjct: 323 -GCTLQQVFGXAE-GLVNYTRL---DDPEEIIVNTQGKPXSPYDESRVWDDHDRDVKPGE 377
Query: 386 AGEICIRGAQIMKGTY 401
G + RG ++G Y
Sbjct: 378 TGHLLTRGPYTIRGYY 393
>pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From
Legionella Pneumophila
pdb|3LNV|A Chain A, The Crystal Structure Of Fatty Acyl-Adenylate Ligase From
L. Pneumophila In Complex With Acyl Adenylate And
Pyrophosphate
Length = 590
Score = 78.2 bits (191), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 95/417 (22%), Positives = 165/417 (39%), Gaps = 91/417 (21%)
Query: 44 IINGPTGDVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGAT 103
+N + TY ++ ++ +AA L G + GD ++LL + AFLG Y G
Sbjct: 32 FLNKELEETXTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYAGCI 91
Query: 104 STTANPFYTPPEXXXXXXXXXXXXXXXXXVYNDKVRDLSEHHGARIVTIDPP------PE 157
A P Y P + +K+ D ++ RIVT P +
Sbjct: 92 ---AVPIYPPAQ--------------------EKLLDKAQ----RIVTNSKPVIVLXIAD 124
Query: 158 NCLHFS--ELITQADENEIPAV----------------KINPDDVVALPYSSGTTGLPKG 199
+ F+ EL T +IPA+ I +D+ L Y+SG+T PKG
Sbjct: 125 HIKKFTADELNTNPKFLKIPAIALESIELNRSSSWQPTSIKSNDIAFLQYTSGSTXHPKG 184
Query: 200 VMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSLNSVLLCALRVGAAILIM 259
V ++H L+ ++ + + + + E +I LP H L +L + G +
Sbjct: 185 VXVSHHNLLDNLNKIFT----SFHXNDETIIFSWLPPHHDXGLIGCILTPIYGGIQAIXX 240
Query: 260 QKFDIVK----LMELVQKYKVTVA---PFVPPIVLAVAKSGDVDKYDMSSIRTVMSGAAP 312
F ++ ++ + KYK T++ F + + + D+SS T +GA P
Sbjct: 241 SPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAEP 300
Query: 313 MGKELEDAVRAKLPHAKLGQG-----YGMTEAGPVLS--------MCLAFAKEPFE---- 355
+ +E + + YG+ EA +++ L AKE F+
Sbjct: 301 VREETXEHFYQAFKEFGFRKEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRV 360
Query: 356 ----------IKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQIMKGTYH 402
K + G ++ E+KI+DPDT I +Q GEI ++ + KG ++
Sbjct: 361 HFADDNSPGSYKLVSSGNPIQ--EVKIIDPDTLIPCDFDQVGEIWVQSNSVAKGYWN 415
>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|B Chain B, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|C Chain C, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
Length = 501
Score = 77.8 bits (190), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 62/228 (27%), Positives = 108/228 (47%), Gaps = 19/228 (8%)
Query: 172 NEIPAVKINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVIL 231
+ I N DD+ ++ ++SGTTG K V T + S G +L ++ L
Sbjct: 153 SNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAI----GCKESLGFDRDTNWL 208
Query: 232 CVLPLFHIYSLNSVLLCALRVGAAILIMQKFDIVKLMELVQKYKVTVAPFVPPIVLAVAK 291
VLP++HI L SVLL A+ G + I+ KF+ +++ +++ ++T VP + + +
Sbjct: 209 SVLPIYHISGL-SVLLRAVIEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQ 267
Query: 292 SGDVDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGYGMTEAGPVLSMCLAFAK 351
G + Y++ I ++ GA +E A++ LP + +GMTE S L
Sbjct: 268 QGLHEPYNLQKI--LLGGAKLSATMIETALQYNLP---IYNSFGMTE---TCSQFLTATP 319
Query: 352 EPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQIMKG 399
E + G N ++KI +P+ + GE+ I+GA +M G
Sbjct: 320 EMLHARPDTVGMPSANVDVKIKNPN------KEGHGELMIKGANVMNG 361
>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
pdb|3IVR|B Chain B, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
Length = 509
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 92/389 (23%), Positives = 156/389 (40%), Gaps = 37/389 (9%)
Query: 25 LPLHTYCF-----ENISQFADRPCIINGPTGDVYTYADVELTSRKVAAGLSKLGVQKGDV 79
+ LH + N + F DR + G T+ D + ++A+GL + GV GD
Sbjct: 1 MSLHDFTLADVYRRNAALFPDRTAFMV--DGVRLTHRDYLARAERLASGLLRDGVHTGDR 58
Query: 80 IMLLLQNCPQFVFAFLGASYIGATSTTANPFYTPPEXXXXXXXXXXXXXXXXXVYNDKVR 139
+ +L QNC + + + IGA N E Y D V
Sbjct: 59 VAILSQNCSEMIELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVA 118
Query: 140 DLSEHHGA--RIVTIDPPPENCLHFSELITQADENEIPAVKINPDDVVALPYSSGTTGLP 197
+ G + I F +L A + A + D + +++ G P
Sbjct: 119 GVLPSLGGVKKAYAIGDGSGPFAPFKDL---ASDTPFSAPEFGAADGFVIIHTAAVGGRP 175
Query: 198 KGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSLNSVLLCALRVGAAIL 257
+G +++ L+ + + VD L + DV L +LPLFH+ L ++L + G A +
Sbjct: 176 RGALISQGNLLIAQSSLVDA----WRLTEADVNLGMLPLFHVTGLG-LMLTLQQAGGASV 230
Query: 258 IMQKFDIVKLMELVQKYKVTV----APFVPPIVLAVAKSGDVDKYDMSSIRTVMSGAAPM 313
I KFD + ++ +KVTV AP + I+ A + ++S+R V P
Sbjct: 231 IAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQAAPA------QLASLRAVTGLDTP- 283
Query: 314 GKELEDAVRAKLPHAKLGQGYGMTEAGPVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIV 373
E + A P+A +G +E S FA P+ + + G + + +V
Sbjct: 284 --ETIERFEATCPNATFWATFGQSET----SGLSTFA--PYRDRPKSAGRPLFWRTVAVV 335
Query: 374 DPDTGISLPRNQAGEICIRGAQIMKGTYH 402
D + LP + GEI +RG + KG ++
Sbjct: 336 DAED-RPLPPGEVGEIVLRGPTVFKGYWN 363
>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A
Nonribosomal Peptide Synthetase Termination Module
Length = 1304
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 96/409 (23%), Positives = 155/409 (37%), Gaps = 54/409 (13%)
Query: 7 HQEFIFRSKLPDIYIPNHLPLHTYCFENISQFADRPCIINGPTGDVYTYADVELTSRKVA 66
+EF+ P PL + E ++ D P + +G +Y +++ + ++A
Sbjct: 446 EREFLLTGLNPPAQAHETKPLTYWFKEAVNANPDAPALTY--SGQTLSYRELDEEANRIA 503
Query: 67 AGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPFYTPPEXXXXXXXXXXX 126
L K G KG V+ L + + V LG GA +P PE
Sbjct: 504 RRLQKHGAGKGSVVALYTKRSLELVIGILGVLKAGAAYLPVDP--KLPEDRISYMLADSA 561
Query: 127 XXXXXXVYNDKVRDLSEHHGARIVTIDPPPENCLHFSELITQADEN-EIPAVKINPDDVV 185
L H + + P F + T+ +E PA I+P+D
Sbjct: 562 AAC-----------LLTHQEMKEQAAELPYTGTTLFIDDQTRFEEQASDPATAIDPNDPA 610
Query: 186 ALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPL-FHIYSLNS 244
+ Y+SGTTG PKG + TH + + + VD + +D L V F ++ +
Sbjct: 611 YIMYTSGTTGKPKGNITTHAN-IQGLVKHVD----YMAFSDQDTFLSVSNYAFDAFTFD- 664
Query: 245 VLLCALRVGAAILIMQK----FDIVKLMELVQKYKVTVAPFVPPIVLAVAKSGDVDKYDM 300
A + AA LI+ D +L +L+ + V V F + + D M
Sbjct: 665 --FYASMLNAARLIIADEHTLLDTERLTDLILQENVNVM-FATTALFNLLTDAGEDW--M 719
Query: 301 SSIRTVMSGAAPMGKELEDAVRAKLPHAK-----LGQG-----YGMTEAGPVLSMCLAFA 350
+R ++ G RA +PH + +G G YG TE G V +
Sbjct: 720 KGLRCILFGGE----------RASVPHVRKALRIMGPGKLINCYGPTE-GTVFATAHVVH 768
Query: 351 KEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQIMKG 399
P I S G + NA + I++ + + P GE+CI G + KG
Sbjct: 769 DLPDSISSLPIGKPISNASVYILNEQSQLQ-PFGAVGELCISGMGVSKG 816
>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QVY|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3,4- Dichlorobenzoate
Length = 504
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 73/298 (24%), Positives = 121/298 (40%), Gaps = 19/298 (6%)
Query: 54 TYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPFYTP 113
T+A++ VAA L G++ + ++ N V A L +GA NP
Sbjct: 31 THAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKS 90
Query: 114 PEXXXXXXXXXXXXXXXXXVYNDKVRDLSEHHGARIVTIDPPPENCLHFSELITQADENE 173
E GARI+ + + + E + E
Sbjct: 91 AELAELIKRGEMTAAVIAVGRQVADAIFQSGSGARIIFLG----DLVRDGEPYSYGPPIE 146
Query: 174 IPAVKINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSV---AQQVDGENPNLYLHKEDVI 230
P + P + Y+SGTTGLPK ++ + + V + QV L + +V+
Sbjct: 147 DP--QREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQV-----GLRHGRHNVV 199
Query: 231 LCVLPLFHIYSLNSVLLCALRVGAAILIMQKFDIVKLMELVQKYKVTVAPFVPPIVLAVA 290
L ++PL+H+ +VL+ AL + +++++F V ++LVQ+ +VT + F P L
Sbjct: 200 LGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVT-SLFATPTHLDAL 258
Query: 291 KSGDV---DKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGYGMTEAGPVLSM 345
+ + S+R V A M + + V LP K+ GYG TEA L M
Sbjct: 259 AAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKV-NGYGTTEAMNSLYM 315
>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
pdb|3PBK|B Chain B, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
Length = 583
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 97/423 (22%), Positives = 163/423 (38%), Gaps = 94/423 (22%)
Query: 38 FADRPCIINGPTGDVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGA 97
F DR C + D Y ++ + A L L ++KGD + L+ + +FV AF
Sbjct: 38 FYDRRCQLE----DQLEYQTLKARAEAGAKRLLSLNLKKGDRVALIAETSSEFVEAFFAC 93
Query: 98 SYIGATSTTANPFYTPPEXXXXXXXXXXXXXXXXXVYNDKVRDL-SEHHGARIVTID--- 153
Y G A P P ++ K++ L + A I+T D
Sbjct: 94 QYAG---LVAVPLAIP------------XGVGQRDSWSAKLQGLLASCQPAAIITGDEWL 138
Query: 154 PPPENCLHFS---ELITQADENEIPAVKIN-----PDDVVALPYSSGTTGLPKGVMLTHK 205
P H + +++ A +P + P+D+ L Y+SG+T P+GV++TH+
Sbjct: 139 PLVNAATHDNPELHVLSHAWFKALPEADVALQRPVPNDIAYLQYTSGSTRFPRGVIITHR 198
Query: 206 GLVTSV-AQQVDGENPNLYLHKEDVILCVLPLFHIYSLNSVLLC--ALRVGAAILIMQKF 262
+ ++ A DG + L D + LP +H L LL A ++ L Q F
Sbjct: 199 EVXANLRAISHDG----IKLRPGDRCVSWLPFYHDXGLVGFLLTPVATQLSVDYLRTQDF 254
Query: 263 DI--VKLMELVQKYKVTVA---PFVPPIVLAVAKSGDVDKYDMSSIRTVMSGAAPMGKE- 316
++ ++L+ K + TV+ PF + D+ + D+S R GA P+ E
Sbjct: 255 AXRPLQWLKLISKNRGTVSVAPPFGYELCQRRVNEKDLAELDLSCWRVAGIGAEPISAEQ 314
Query: 317 ----LEDAVRAKLPHAKLGQGYGMTEAGPVLSMCLAFAKEPFEIKSGACGTVVRNAEMKI 372
E + + YG+ E ++ ++F+ E A G VV + I
Sbjct: 315 LHQFAECFRQVNFDNKTFXPCYGLAEN----ALAVSFSDE-------ASGVVVNEVDRDI 363
Query: 373 VD-------------------------PDTGISLPRNQA---------GEICIRGAQIMK 398
++ P+ GI + RN+A G ICI G +
Sbjct: 364 LEYQGKAVAPGAETRAVSTFVNCGKALPEHGIEI-RNEAGXPVAERVVGHICISGPSLXS 422
Query: 399 GTY 401
G +
Sbjct: 423 GYF 425
>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QW0|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, I303a Mutation,
Bound To 3,4 Dichlorobenzoate
Length = 504
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 72/298 (24%), Positives = 120/298 (40%), Gaps = 19/298 (6%)
Query: 54 TYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPFYTP 113
T+A++ VAA L G++ + ++ N V A L +GA NP
Sbjct: 31 THAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKS 90
Query: 114 PEXXXXXXXXXXXXXXXXXVYNDKVRDLSEHHGARIVTIDPPPENCLHFSELITQADENE 173
E GARI+ + + + E + E
Sbjct: 91 AELAELIKRGEMTAAVIAVGRQVADAIFQSGSGARIIFLG----DLVRDGEPYSYGPPIE 146
Query: 174 IPAVKINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSV---AQQVDGENPNLYLHKEDVI 230
P + P + Y+SGTTGLPK ++ + + V + QV L + +V+
Sbjct: 147 DP--QREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQV-----GLRHGRHNVV 199
Query: 231 LCVLPLFHIYSLNSVLLCALRVGAAILIMQKFDIVKLMELVQKYKVTVAPFVPPIVLAVA 290
L ++PL+H+ +VL+ AL + +++++F V ++LVQ+ +VT + F P L
Sbjct: 200 LGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVT-SLFATPTHLDAL 258
Query: 291 KSGDV---DKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGYGMTEAGPVLSM 345
+ + S+R V A M + + V LP K+ YG TEA L M
Sbjct: 259 AAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKV-NAYGTTEAMNSLYM 315
>pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In
Complex With Amp
Length = 663
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 75/351 (21%), Positives = 138/351 (39%), Gaps = 32/351 (9%)
Query: 72 LGVQKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPFYTPPEXXXXXXXXXXXXXXXX 131
+GV+KGD + + + P+ + L S IGA + ++
Sbjct: 134 MGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITT 193
Query: 132 XVYN--------DKVRD--LSEHHGARIVTIDPPPEN---CLHFSELITQADENE----- 173
N ++ D L E G R V + N H + A E +
Sbjct: 194 DESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVAFHAPRDLDWATEKKKYKTY 253
Query: 174 IPAVKINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCV 233
P ++ +D + L Y+SG+TG PKGV + G + + H+EDV
Sbjct: 254 YPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTM---RYTFDTHQEDVFFTA 310
Query: 234 LPLFHIYSLNSVLLCALRVGAAILIMQKF----DIVKLMELVQKYKVTVAPFVPPIVLAV 289
+ I V+ L G A L+ + + + +++ ++KVT P + +
Sbjct: 311 GDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLL 370
Query: 290 AKSGD--VDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLG--QGYGMTEAGPVLSM 345
++GD ++ + + S+R + S P+ E+ + K+ ++ Y TE+G L
Sbjct: 371 KRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVT 430
Query: 346 CLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQA-GEICIRGAQ 395
LA P +K G+ + ++DP+TG L + A G + ++ A
Sbjct: 431 PLAGGVTP--MKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAW 479
>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O82|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O83|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O83|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O84|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3O84|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3U16|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U16|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U17|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
pdb|3U17|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
Length = 544
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 88/364 (24%), Positives = 145/364 (39%), Gaps = 32/364 (8%)
Query: 54 TYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQF---VFAFLGASYIGATSTTANPF 110
+Y +++ S +A L++ G+ KGD ++ L N +F FA L A + + ++
Sbjct: 57 SYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGVVVLNALYSHRQ 116
Query: 111 YTPPEXXXXXXXXXXXXXXXXXVYNDKVRDLSEHHGARIVTIDPPPENCLHFSELITQ-- 168
Y V+++ S H ++ PE L + T
Sbjct: 117 YELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLH------DVNLSPEIILMLNHQATDFG 170
Query: 169 -ADENEIPA------VKINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSV--AQQVDGEN 219
D E PA D+V S G+TG PK + TH SV + ++ G N
Sbjct: 171 LLDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLN 230
Query: 220 PNLYLHKEDVILCVLPLFHIYSLNS-VLLCALRVGAAILIMQKFDIVKLMELVQKYKVTV 278
N L LC LP H + L+S L L G +++ + + ++Q+++V +
Sbjct: 231 SNTRL------LCALPAPHNFMLSSPGALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNM 284
Query: 279 APFVPPIVLAVAKSGDVDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGYGMTE 338
A VP V+ + K + S++ + G A + L V L + KL Q +GM E
Sbjct: 285 ASLVPSAVIMWLEKAAQYKDQIQSLKLLQVGGASFPESLARQVPEVL-NCKLQQVFGMAE 343
Query: 339 AGPVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQIMK 398
G V L + E G + + E+KIVD + +P + G + RG
Sbjct: 344 -GLVNYTRLDDSDEQIFTTQGR--PISSDDEIKIVD-EQYREVPEGEIGMLATRGPYTFC 399
Query: 399 GTYH 402
G Y
Sbjct: 400 GYYQ 403
>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Methylmalonyl-Coa And Amp Bound
pdb|3NYR|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Malonyl-Coa And Amp Bound
Length = 505
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 62/249 (24%), Positives = 113/249 (45%), Gaps = 19/249 (7%)
Query: 154 PPPENCLHFSELITQADENEIPAVKINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQ 213
PP L ++ +A +P + D + Y+SGTTG PKG ++ + L T++
Sbjct: 128 PPALGALERVDVDVRA-RGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDA 186
Query: 214 QVDGENPNLYLHKEDVILCVLPLFHIYSLNSVLLCALRVGAAILIMQKFDIVKLMELVQK 273
D EDV++ LPLFH++ L +L LR G ++ + +F +
Sbjct: 187 LADA----WQWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLGRFSTEGAARELND 242
Query: 274 YKVTVAPFVPPIVLAVAKSGDVD---KYDMSSIRTVMSGAAPMGKELEDAVR-AKLPHAK 329
T+ VP + +A++ D ++ R ++SG+A + + D R A +
Sbjct: 243 -GATMLFGVPTMYHRIAETLPADPELAKALAGARLLVSGSAAL--PVHDHERIAAATGRR 299
Query: 330 LGQGYGMTEAGPVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTG--ISLPRNQAG 387
+ + YGMTE +++ + EP ++G G + E+++V+ D +L G
Sbjct: 300 VIERYGMTET--LMNTSVRADGEP---RAGTVGVPLPGVELRLVEEDGTPIAALDGESVG 354
Query: 388 EICIRGAQI 396
EI +RG +
Sbjct: 355 EIQVRGPNL 363
>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To
4cba-adenylate
Length = 504
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 72/298 (24%), Positives = 120/298 (40%), Gaps = 19/298 (6%)
Query: 54 TYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPFYTP 113
T+A++ VAA L G++ + ++ N V A L +GA NP
Sbjct: 31 THAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKS 90
Query: 114 PEXXXXXXXXXXXXXXXXXVYNDKVRDLSEHHGARIVTIDPPPENCLHFSELITQADENE 173
E GARI+ + + + E + E
Sbjct: 91 AELAELIKRGEMTAAVIAVGRQVADAIFQSGSGARIIFLG----DLVRDGEPYSYGPPIE 146
Query: 174 IPAVKINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSV---AQQVDGENPNLYLHKEDVI 230
P + P + Y+SGTTGLPK ++ + + V + QV L + +V+
Sbjct: 147 DP--QREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQV-----GLRHGRHNVV 199
Query: 231 LCVLPLFHIYSLNSVLLCALRVGAAILIMQKFDIVKLMELVQKYKVTVAPFVPPIVLAVA 290
L ++PL+H+ +VL+ AL + +++++F V ++LVQ+ +VT + F P L
Sbjct: 200 LGLMPLYHVVGFFAVLVAALALDGTYVVIEEFRPVDALQLVQQEQVT-SLFATPTHLDAL 258
Query: 291 KSGDV---DKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGYGMTEAGPVLSM 345
+ + S+R V A M + + V LP K+ YG TEA L M
Sbjct: 259 AAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNI-YGTTEAMNSLYM 315
>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND
To 4cb
Length = 504
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 72/298 (24%), Positives = 120/298 (40%), Gaps = 19/298 (6%)
Query: 54 TYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPFYTP 113
T+A++ VAA L G++ + ++ N V A L +GA NP
Sbjct: 31 THAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKS 90
Query: 114 PEXXXXXXXXXXXXXXXXXVYNDKVRDLSEHHGARIVTIDPPPENCLHFSELITQADENE 173
E GARI+ + + + E + E
Sbjct: 91 AELAELIKRGEMTAAVIAVGRQVADAIFQSGSGARIIFLG----DLVRDGEPYSYGPPIE 146
Query: 174 IPAVKINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSV---AQQVDGENPNLYLHKEDVI 230
P + P + Y+SGTTGLPK ++ + + V + QV L + +V+
Sbjct: 147 DP--QREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQV-----GLRHGRHNVV 199
Query: 231 LCVLPLFHIYSLNSVLLCALRVGAAILIMQKFDIVKLMELVQKYKVTVAPFVPPIVLAVA 290
L ++PL+H+ +VL+ AL + +++++F V ++LVQ+ +VT + F P L
Sbjct: 200 LGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVT-SLFATPTHLDAL 258
Query: 291 KSGDV---DKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGYGMTEAGPVLSM 345
+ + S+R V A M + + V LP K+ YG TEA L M
Sbjct: 259 AAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNI-YGTTEAMNSLYM 315
>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO
4-Chlorobenzoate
pdb|3CW9|A Chain A, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
pdb|3CW9|B Chain B, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
Length = 504
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 72/298 (24%), Positives = 120/298 (40%), Gaps = 19/298 (6%)
Query: 54 TYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPFYTP 113
T+A++ VAA L G++ + ++ N V A L +GA NP
Sbjct: 31 THAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKS 90
Query: 114 PEXXXXXXXXXXXXXXXXXVYNDKVRDLSEHHGARIVTIDPPPENCLHFSELITQADENE 173
E GARI+ + + + E + E
Sbjct: 91 AELAELIKRGEMTAAVIAVGRQVADAIFQSGSGARIIFLG----DLVRDGEPYSYGPPIE 146
Query: 174 IPAVKINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSV---AQQVDGENPNLYLHKEDVI 230
P + P + Y+SGTTGLPK ++ + + V + QV L + +V+
Sbjct: 147 DP--QREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQV-----GLRHGRHNVV 199
Query: 231 LCVLPLFHIYSLNSVLLCALRVGAAILIMQKFDIVKLMELVQKYKVTVAPFVPPIVLAVA 290
L ++PL+H+ +VL+ AL + +++++F V ++LVQ+ +VT + F P L
Sbjct: 200 LGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVT-SLFATPTHLDAL 258
Query: 291 KSGDV---DKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGYGMTEAGPVLSM 345
+ + S+R V A M + + V LP K+ YG TEA L M
Sbjct: 259 AAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNI-YGTTEAMNSLYM 315
>pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
pdb|1AMU|B Chain B, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
Length = 563
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 107/222 (48%), Gaps = 20/222 (9%)
Query: 183 DVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSL 242
D+ + Y+SGTTG PKG ML HKG+ +V EN +L + ++D I + S+
Sbjct: 183 DLAYVIYTSGTTGNPKGTMLEHKGISNL---KVFFEN-SLNVTEKDRIGQFASISFDASV 238
Query: 243 NSVLLCALRVGAAILIMQK---FDIVKLMELVQKYKVTVAPFVPPIVLAVAKSGDVDKYD 299
+ + AL GA++ I+ K D VK + + + ++TV P V+ +D
Sbjct: 239 WEMFM-ALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVV------HLDPER 291
Query: 300 MSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGYGMTEAGPVLSMCLAFAKEPFEIKSG 359
+ SI+T+++ + L + + K+ + YG TE + +A KE S
Sbjct: 292 ILSIQTLITAGSATSPSLVNKWKEKVTYIN---AYGPTETTICATTWVA-TKETIG-HSV 346
Query: 360 ACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQIMKGTY 401
G ++N ++ IVD + + +AGE+CI G + +G +
Sbjct: 347 PIGAPIQNTQIYIVDENLQLK-SVGEAGELCIGGEGLARGYW 387
>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation
pdb|2P2B|B Chain B, Acetyl-coa Synthetase, V386a Mutation
Length = 652
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 83/376 (22%), Positives = 144/376 (38%), Gaps = 42/376 (11%)
Query: 20 YIPNHLPLHTYCFE-NISQFADRPCII----NGPTGDVYTYADVELTSRKVAAGLSKLGV 74
Y L L C + ++ + DR II + +Y ++ + A L LG+
Sbjct: 70 YEDGTLNLAANCLDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGI 129
Query: 75 QKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPFYTPP------------------EX 116
+KGDV+ + + P+ A L + IGA + ++P E
Sbjct: 130 KKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEG 189
Query: 117 XXXXXXXXXXXXXXXXVYNDKVRDLSEHHGARIVT---IDPPPENCLHFSELITQADENE 173
+ N V + EH T ID L + +LI +A
Sbjct: 190 VRAGRSIPLKKNVDDALKNPNVTSV-EHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEH 248
Query: 174 IPAVKINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCV 233
P +N +D + + Y+SG+TG PKGV+ T G + A H D+ C
Sbjct: 249 QPEA-MNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTF---KYVFDYHPGDIYWCT 304
Query: 234 LPLFHIYSLNSVLLCALRVGAAILIMQKF----DIVKLMELVQKYKVTVAPFVPPIVLAV 289
+ + + +L L GA L+ + ++ ++V K++V + P + A+
Sbjct: 305 ADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRAL 364
Query: 290 AKSGD--VDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAK--LGQGYGMTEAGPVLSM 345
GD ++ D SS+R + S P+ E + K+ K + + TE G +
Sbjct: 365 MAEGDKAIEGTDRSSLRILGSAGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMIT 424
Query: 346 CLAFAKEPFEIKSGAC 361
L A E+K+G+
Sbjct: 425 PLPGA---IELKAGSA 437
>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG3|B Chain B, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG4|A Chain A, Acetyl Coa Synthetase, Salmonella Enterica
pdb|1PG4|B Chain B, Acetyl Coa Synthetase, Salmonella Enterica
Length = 652
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 83/376 (22%), Positives = 144/376 (38%), Gaps = 42/376 (11%)
Query: 20 YIPNHLPLHTYCFE-NISQFADRPCII----NGPTGDVYTYADVELTSRKVAAGLSKLGV 74
Y L L C + ++ + DR II + +Y ++ + A L LG+
Sbjct: 70 YEDGTLNLAANCLDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGI 129
Query: 75 QKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPFYTPP------------------EX 116
+KGDV+ + + P+ A L + IGA + ++P E
Sbjct: 130 KKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEG 189
Query: 117 XXXXXXXXXXXXXXXXVYNDKVRDLSEHHGARIVT---IDPPPENCLHFSELITQADENE 173
+ N V + EH T ID L + +LI +A
Sbjct: 190 VRAGRSIPLKKNVDDALKNPNVTSV-EHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEH 248
Query: 174 IPAVKINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCV 233
P +N +D + + Y+SG+TG PKGV+ T G + A H D+ C
Sbjct: 249 QPEA-MNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTF---KYVFDYHPGDIYWCT 304
Query: 234 LPLFHIYSLNSVLLCALRVGAAILIMQKF----DIVKLMELVQKYKVTVAPFVPPIVLAV 289
+ + + +L L GA L+ + ++ ++V K++V + P + A+
Sbjct: 305 ADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRAL 364
Query: 290 AKSGD--VDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAK--LGQGYGMTEAGPVLSM 345
GD ++ D SS+R + S P+ E + K+ K + + TE G +
Sbjct: 365 MAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMIT 424
Query: 346 CLAFAKEPFEIKSGAC 361
L A E+K+G+
Sbjct: 425 PLPGA---IELKAGSA 437
>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation
pdb|2P2J|B Chain B, Acetyl-Coa Synthetase, K609a Mutation
Length = 652
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 83/376 (22%), Positives = 144/376 (38%), Gaps = 42/376 (11%)
Query: 20 YIPNHLPLHTYCFE-NISQFADRPCII----NGPTGDVYTYADVELTSRKVAAGLSKLGV 74
Y L L C + ++ + DR II + +Y ++ + A L LG+
Sbjct: 70 YEDGTLNLAANCLDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGI 129
Query: 75 QKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPFYTPP------------------EX 116
+KGDV+ + + P+ A L + IGA + ++P E
Sbjct: 130 KKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEG 189
Query: 117 XXXXXXXXXXXXXXXXVYNDKVRDLSEHHGARIVT---IDPPPENCLHFSELITQADENE 173
+ N V + EH T ID L + +LI +A
Sbjct: 190 VRAGRSIPLKKNVDDALKNPNVTSV-EHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEH 248
Query: 174 IPAVKINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCV 233
P +N +D + + Y+SG+TG PKGV+ T G + A H D+ C
Sbjct: 249 QPEA-MNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTF---KYVFDYHPGDIYWCT 304
Query: 234 LPLFHIYSLNSVLLCALRVGAAILIMQKF----DIVKLMELVQKYKVTVAPFVPPIVLAV 289
+ + + +L L GA L+ + ++ ++V K++V + P + A+
Sbjct: 305 ADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRAL 364
Query: 290 AKSGD--VDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAK--LGQGYGMTEAGPVLSM 345
GD ++ D SS+R + S P+ E + K+ K + + TE G +
Sbjct: 365 MAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMIT 424
Query: 346 CLAFAKEPFEIKSGAC 361
L A E+K+G+
Sbjct: 425 PLPGA---IELKAGSA 437
>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
pdb|2P2F|B Chain B, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
Length = 652
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 83/376 (22%), Positives = 144/376 (38%), Gaps = 42/376 (11%)
Query: 20 YIPNHLPLHTYCFE-NISQFADRPCII----NGPTGDVYTYADVELTSRKVAAGLSKLGV 74
Y L L C + ++ + DR II + +Y ++ + A L LG+
Sbjct: 70 YEDGTLNLAANCLDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGI 129
Query: 75 QKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPFYTPP------------------EX 116
+KGDV+ + + P+ A L + IGA + ++P E
Sbjct: 130 KKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEG 189
Query: 117 XXXXXXXXXXXXXXXXVYNDKVRDLSEHHGARIVT---IDPPPENCLHFSELITQADENE 173
+ N V + EH T ID L + +LI +A
Sbjct: 190 VRAGRSIPLKKNVDDALKNPNVTSV-EHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEH 248
Query: 174 IPAVKINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCV 233
P +N +D + + Y+SG+TG PKGV+ T G + A H D+ C
Sbjct: 249 QPEA-MNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTF---KYVFDYHPGDIYWCT 304
Query: 234 LPLFHIYSLNSVLLCALRVGAAILIMQKF----DIVKLMELVQKYKVTVAPFVPPIVLAV 289
+ + + +L L GA L+ + ++ ++V K++V + P + A+
Sbjct: 305 ADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRAL 364
Query: 290 AKSGD--VDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAK--LGQGYGMTEAGPVLSM 345
GD ++ D SS+R + S P+ E + K+ K + + TE G +
Sbjct: 365 MAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMIT 424
Query: 346 CLAFAKEPFEIKSGAC 361
L A E+K+G+
Sbjct: 425 PLPGA---IELKAGSA 437
>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation
pdb|2P2M|B Chain B, Acetyl-Coa Synthetase, R194a Mutation
Length = 652
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 83/376 (22%), Positives = 144/376 (38%), Gaps = 42/376 (11%)
Query: 20 YIPNHLPLHTYCFE-NISQFADRPCII----NGPTGDVYTYADVELTSRKVAAGLSKLGV 74
Y L L C + ++ + DR II + +Y ++ + A L LG+
Sbjct: 70 YEDGTLNLAANCLDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGI 129
Query: 75 QKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPFYTPP------------------EX 116
+KGDV+ + + P+ A L + IGA + ++P E
Sbjct: 130 KKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEG 189
Query: 117 XXXXXXXXXXXXXXXXVYNDKVRDLSEHHGARIVT---IDPPPENCLHFSELITQADENE 173
+ N V + EH T ID L + +LI +A
Sbjct: 190 VRAGASIPLKKNVDDALKNPNVTSV-EHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEH 248
Query: 174 IPAVKINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCV 233
P +N +D + + Y+SG+TG PKGV+ T G + A H D+ C
Sbjct: 249 QPEA-MNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTF---KYVFDYHPGDIYWCT 304
Query: 234 LPLFHIYSLNSVLLCALRVGAAILIMQKF----DIVKLMELVQKYKVTVAPFVPPIVLAV 289
+ + + +L L GA L+ + ++ ++V K++V + P + A+
Sbjct: 305 ADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRAL 364
Query: 290 AKSGD--VDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAK--LGQGYGMTEAGPVLSM 345
GD ++ D SS+R + S P+ E + K+ K + + TE G +
Sbjct: 365 MAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMIT 424
Query: 346 CLAFAKEPFEIKSGAC 361
L A E+K+G+
Sbjct: 425 PLPGA---IELKAGSA 437
>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation
pdb|2P2Q|B Chain B, Acetyl-Coa Synthetase, R584e Mutation
Length = 652
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 83/376 (22%), Positives = 144/376 (38%), Gaps = 42/376 (11%)
Query: 20 YIPNHLPLHTYCFE-NISQFADRPCII----NGPTGDVYTYADVELTSRKVAAGLSKLGV 74
Y L L C + ++ + DR II + +Y ++ + A L LG+
Sbjct: 70 YEDGTLNLAANCLDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGI 129
Query: 75 QKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPFYTPP------------------EX 116
+KGDV+ + + P+ A L + IGA + ++P E
Sbjct: 130 KKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEG 189
Query: 117 XXXXXXXXXXXXXXXXVYNDKVRDLSEHHGARIVT---IDPPPENCLHFSELITQADENE 173
+ N V + EH T ID L + +LI +A
Sbjct: 190 VRAGRSIPLKKNVDDALKNPNVTSV-EHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEH 248
Query: 174 IPAVKINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCV 233
P +N +D + + Y+SG+TG PKGV+ T G + A H D+ C
Sbjct: 249 QPEA-MNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTF---KYVFDYHPGDIYWCT 304
Query: 234 LPLFHIYSLNSVLLCALRVGAAILIMQKF----DIVKLMELVQKYKVTVAPFVPPIVLAV 289
+ + + +L L GA L+ + ++ ++V K++V + P + A+
Sbjct: 305 ADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRAL 364
Query: 290 AKSGD--VDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAK--LGQGYGMTEAGPVLSM 345
GD ++ D SS+R + S P+ E + K+ K + + TE G +
Sbjct: 365 MAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMIT 424
Query: 346 CLAFAKEPFEIKSGAC 361
L A E+K+G+
Sbjct: 425 PLPGA---IELKAGSA 437
>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation
pdb|2P20|B Chain B, Acetyl-Coa Synthetase, R584a Mutation
Length = 652
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 83/376 (22%), Positives = 144/376 (38%), Gaps = 42/376 (11%)
Query: 20 YIPNHLPLHTYCFE-NISQFADRPCII----NGPTGDVYTYADVELTSRKVAAGLSKLGV 74
Y L L C + ++ + DR II + +Y ++ + A L LG+
Sbjct: 70 YEDGTLNLAANCLDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGI 129
Query: 75 QKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPFYTPP------------------EX 116
+KGDV+ + + P+ A L + IGA + ++P E
Sbjct: 130 KKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEG 189
Query: 117 XXXXXXXXXXXXXXXXVYNDKVRDLSEHHGARIVT---IDPPPENCLHFSELITQADENE 173
+ N V + EH T ID L + +LI +A
Sbjct: 190 VRAGRSIPLKKNVDDALKNPNVTSV-EHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEH 248
Query: 174 IPAVKINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCV 233
P +N +D + + Y+SG+TG PKGV+ T G + A H D+ C
Sbjct: 249 QPEA-MNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTF---KYVFDYHPGDIYWCT 304
Query: 234 LPLFHIYSLNSVLLCALRVGAAILIMQKF----DIVKLMELVQKYKVTVAPFVPPIVLAV 289
+ + + +L L GA L+ + ++ ++V K++V + P + A+
Sbjct: 305 ADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRAL 364
Query: 290 AKSGD--VDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAK--LGQGYGMTEAGPVLSM 345
GD ++ D SS+R + S P+ E + K+ K + + TE G +
Sbjct: 365 MAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMIT 424
Query: 346 CLAFAKEPFEIKSGAC 361
L A E+K+G+
Sbjct: 425 PLPGA---IELKAGSA 437
>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED,
SELENOMETHIONINE
Length = 504
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 70/292 (23%), Positives = 117/292 (40%), Gaps = 19/292 (6%)
Query: 54 TYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPFYTP 113
T+A++ VAA L G++ + ++ N V A L +GA NP
Sbjct: 31 THAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKS 90
Query: 114 PEXXXXXXXXXXXXXXXXXVYNDKVRDLSEHHGARIVTIDPPPENCLHFSELITQADENE 173
E GARI+ + + + E + E
Sbjct: 91 AELAELIKRGEXTAAVIAVGRQVADAIFQSGSGARIIFLG----DLVRDGEPYSYGPPIE 146
Query: 174 IPAVKINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSV---AQQVDGENPNLYLHKEDVI 230
P + P + Y+SGTTGLPK ++ + + V + QV L + +V+
Sbjct: 147 DP--QREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFXSTQV-----GLRHGRHNVV 199
Query: 231 LCVLPLFHIYSLNSVLLCALRVGAAILIMQKFDIVKLMELVQKYKVTVAPFVPPIVLAVA 290
L + PL+H+ +VL+ AL + +++++F V ++LVQ+ +VT + F P L
Sbjct: 200 LGLXPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVT-SLFATPTHLDAL 258
Query: 291 KSGDV---DKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGYGMTEA 339
+ + S+R V A + + V LP K+ YG TEA
Sbjct: 259 AAAAAHAGSSLKLDSLRHVTFAGATXPDAVLETVHQHLPGEKVNI-YGTTEA 309
>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
pdb|3ETC|B Chain B, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
Length = 580
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 86/410 (20%), Positives = 156/410 (38%), Gaps = 41/410 (10%)
Query: 1 MEAKQDHQEFIFRSKLPDIYIPNHLPLHTYCFENISQFADRPCIINGPTGDVYTYADVEL 60
E+ +D QE F+ +P+ + + + Y ++ + A C G ++T+ D++
Sbjct: 37 FESYEDFQE-NFKILVPENFNFAYDVVDVYARDSPEKLAMIWCDDYG-NEKIFTFKDLKY 94
Query: 61 TSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPFYTPPEXXXXX 120
S K A K G+ KGD +ML L++ F + LG +GA + A +
Sbjct: 95 YSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCMLGLHKLGAIAVPATHMLKTRD-IVYR 153
Query: 121 XXXXXXXXXXXXVYNDKVRDLSEHHG-------ARIVTIDPPPENCLHFSELITQAD--- 170
+D + E H + E + F + + ++
Sbjct: 154 IEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVGGDVLEGWIDFRKELEESSPIF 213
Query: 171 ENEIPAVKINPDDVVALPYSSGTTGLPKGVMLTHKG-------LVTSVAQQVDGENPNLY 223
E V +D+ + +SSGT G PK M+ H L Q V+ + +
Sbjct: 214 ERPTGEVSTKNEDICLVYFSSGTAGFPK--MVEHDNTYPLGHILTAKYWQNVEDDGLHYT 271
Query: 224 LHKEDVILCVLPLFHIYSLNSVLLCALRVGAAILI--MQKFDIVKLMELVQKYKVTVAPF 281
+ CV L G A+ + +F+ ++E KY VT
Sbjct: 272 VADSGWGKCVW---------GKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTF-C 321
Query: 282 VPPIVLAVAKSGDVDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGYGMTEAGP 341
PP + D+ Y+ S+++ + P+ E+ + + KL +G+G TE
Sbjct: 322 APPTIYRFLIKEDLSHYNFSTLKYAVVAGEPLNPEVFNRF-LEFTGIKLMEGFGQTET-- 378
Query: 342 VLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICI 391
V+++ EP K G+ G +++++D D G + GEI I
Sbjct: 379 VVTIATFPWMEP---KPGSIGKPTPGYKIELMDRD-GRLCEVGEEGEIVI 424
>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|B Chain B, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|C Chain C, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|D Chain D, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|E Chain E, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|F Chain F, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|G Chain G, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|H Chain H, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|I Chain I, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|J Chain J, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
Length = 617
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 83/378 (21%), Positives = 146/378 (38%), Gaps = 34/378 (8%)
Query: 39 ADRPCIINGPTGDVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGAS 98
+D +I+G +Y ++ + +A L + G++ G+ ++ L N + F
Sbjct: 39 SDSIAVIDGERQ--LSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALL 96
Query: 99 YIGATSTTA---------NPFYTPPEXXXXXXXXXXXXXXXXXVYNDKVRDLSEHHGARI 149
+G A N + + E N V +EH R+
Sbjct: 97 KLGVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFV---TEHSSIRV 153
Query: 150 VTI--DPPPENCLHFSELITQADENEIPAVKINPDDVVALPYSSGTTGLPKGVMLTHKGL 207
V + D N + I E+ A D+V S GTTG PK + TH
Sbjct: 154 VQLLNDSGEHN---LQDAINHPAED-FTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDY 209
Query: 208 VTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSLNS-VLLCALRVGAAILIMQKFDIVK 266
SV + V+ ++ LC +P H Y+++S L G +++
Sbjct: 210 YYSVRRSVE----ICQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAADPSATL 265
Query: 267 LMELVQKYKVTVAPFVPPIV---LAVAKSGDVDKYDMSSIRTVMSGAAPMGKELEDAVRA 323
L++K++V V VPP V L G+ + ++S++ + G A + L + A
Sbjct: 266 CFPLIEKHQVNVTALVPPAVSLWLQALIEGE-SRAQLASLKLLQVGGARLSATLAARIPA 324
Query: 324 KLPHAKLGQGYGMTEAGPVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPR 383
++ +L Q +GM E G V L + E G + + E+ + D + G LP+
Sbjct: 325 EI-GCQLQQVFGMAE-GLVNYTRLDDSAEKIIHTQGY--PMCPDDEVWVADAE-GNPLPQ 379
Query: 384 NQAGEICIRGAQIMKGTY 401
+ G + RG +G Y
Sbjct: 380 GEVGRLMTRGPYTFRGYY 397
>pdb|4GR4|A Chain A, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|B Chain B, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|C Chain C, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|D Chain D, Crystal Structure Of Slgn1deltaasub
Length = 469
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 72/298 (24%), Positives = 115/298 (38%), Gaps = 41/298 (13%)
Query: 51 DVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPF 110
D TY + + ++A L LGV G ++ + L+ V A L G T +P
Sbjct: 99 DELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAVLKAGGGYTMLDPQ 158
Query: 111 YTPPEXXXXXXXXXXXXXXXXXVYNDKVRDLSEHHGARIVTIDPPPENCLHFSELITQAD 170
+ P E E GA ++ P L + + D
Sbjct: 159 F-PVERLALSL---------------------EDTGAPLLVTSRPLSGRLTGTTTLYVED 196
Query: 171 E--NEIPA----VKINPDDVVALPYSSGTTGLPKGVMLTHKGLV-TSVAQQVDGENPNLY 223
E ++ PA + P+DV + ++SG+TG PKGVM H+ L T + Q G P+
Sbjct: 197 EAASDAPAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLGQDYAGFGPD-- 254
Query: 224 LHKEDVILCVLPLFHIYSLNSVLLCALRVGAAILIM--QKFDIVKLMELVQKYKVTVAPF 281
E + C + + L L AL GA ++ Q D +++ ELV ++ VT+
Sbjct: 255 ---EVFLQCSPVSWDAFGLE--LFGALLFGARCVLQSGQNPDPLEIGELVARHGVTMLQL 309
Query: 282 VPPIVLAVAKSGDVDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGYGMTEA 339
+ + D +R ++G P R P +LG GYG E+
Sbjct: 310 SASLFNFLV---DEVPEAFEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAES 364
>pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|B Chain B, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|C Chain C, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|D Chain D, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
Length = 570
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 72/298 (24%), Positives = 115/298 (38%), Gaps = 41/298 (13%)
Query: 51 DVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPF 110
D TY + + ++A L LGV G ++ + L+ V A L G T +P
Sbjct: 99 DELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAVLKAGGGYTMLDPQ 158
Query: 111 YTPPEXXXXXXXXXXXXXXXXXVYNDKVRDLSEHHGARIVTIDPPPENCLHFSELITQAD 170
+ P E E GA ++ P L + + D
Sbjct: 159 F-PVERLALSL---------------------EDTGAPLLVTSRPLSGRLTGTTTLYVED 196
Query: 171 E--NEIPA----VKINPDDVVALPYSSGTTGLPKGVMLTHKGLV-TSVAQQVDGENPNLY 223
E ++ PA + P+DV + ++SG+TG PKGVM H+ L T + Q G P+
Sbjct: 197 EAASDAPAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLGQDYAGFGPD-- 254
Query: 224 LHKEDVILCVLPLFHIYSLNSVLLCALRVGAAILIM--QKFDIVKLMELVQKYKVTVAPF 281
E + C + + L L AL GA ++ Q D +++ ELV ++ VT+
Sbjct: 255 ---EVFLQCSPVSWDAFGLE--LFGALLFGARCVLQSGQNPDPLEIGELVARHGVTMLQL 309
Query: 282 VPPIVLAVAKSGDVDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGYGMTEA 339
+ + D +R ++G P R P +LG GYG E+
Sbjct: 310 SASLFNFLV---DEVPEAFEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAES 364
>pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|B Chain B, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|C Chain C, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
Length = 569
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 80/377 (21%), Positives = 152/377 (40%), Gaps = 33/377 (8%)
Query: 32 FENISQFADRP-----CIINGPTGDV-YTYADVELTSRKVAAGLS-KLGVQKGDVIMLLL 84
+ ++ + RP +NG ++ + + ++ S++ A LS G+Q+GD + ++L
Sbjct: 47 WADMEKAGKRPPSPALWWVNGKGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVL 106
Query: 85 QNCPQFVFAFLGASYIGATSTTANPFYTPPEXXXXXXXXXXXXXXXXXVYNDKVRD---- 140
P++ LG G T V D+V
Sbjct: 107 PRVPEWWLVILGCIRAGLIFMPG----TIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDT 162
Query: 141 -LSEHHGARI--VTIDPPPENCLHFSELITQADENEIPAVKINPDDVVALPYSSGTTGLP 197
SE RI + + + L+F +L+ +A V+ + A+ ++SGT+GLP
Sbjct: 163 VASECPSLRIKLLVSEKSCDGWLNFKKLLNEASTTH-HCVETGSQEASAIYFTSGTSGLP 221
Query: 198 KGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSLNSVLLCALRVGAAIL 257
K M H + ++D L D++ + I ++ L+ +GA
Sbjct: 222 K--MAEHSYSSLGLKAKMDAGWTG--LQASDIMWTISDTGWILNILCSLMEPWALGACTF 277
Query: 258 I--MQKFDIVKLMELVQKYKVTVAPFVPPIVLAVAKSGDVDKYDMSSIRTVMSGAAPMGK 315
+ + KFD + +++ + Y + + PIV + D+ Y ++ ++ +
Sbjct: 278 VHLLPKFDPLVILKTLSSYPIK-SMMGAPIVYRMLLQQDLSSYKFPHLQNCVTVGESLLP 336
Query: 316 ELEDAVRAKLPHAKLGQGYGMTEAGPVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDP 375
E + RA+ + + YG TE G C+ + +IK G GT +++I+D
Sbjct: 337 ETLENWRAQT-GLDIRESYGQTETGLT---CM--VSKTMKIKPGYMGTAASCYDVQIID- 389
Query: 376 DTGISLPRNQAGEICIR 392
D G LP G+I IR
Sbjct: 390 DKGNVLPPGTEGDIGIR 406
>pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a, With L64p Mutation
pdb|3C5E|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Atp
pdb|3DAY|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp-Cpp
pdb|2VZE|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|C Chain C, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|3EQ6|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3EQ6|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3GPC|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
pdb|3GPC|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
Length = 570
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 80/377 (21%), Positives = 152/377 (40%), Gaps = 33/377 (8%)
Query: 32 FENISQFADRP-----CIINGPTGDV-YTYADVELTSRKVAAGLS-KLGVQKGDVIMLLL 84
+ ++ + RP +NG ++ + + ++ S++ A LS G+Q+GD + ++L
Sbjct: 47 WADMEKAGKRPPSPALWWVNGKGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVL 106
Query: 85 QNCPQFVFAFLGASYIGATSTTANPFYTPPEXXXXXXXXXXXXXXXXXVYNDKVRD---- 140
P++ LG G T V D+V
Sbjct: 107 PRVPEWWLVILGCIRAGLIFMPG----TIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDT 162
Query: 141 -LSEHHGARI--VTIDPPPENCLHFSELITQADENEIPAVKINPDDVVALPYSSGTTGLP 197
SE RI + + + L+F +L+ +A V+ + A+ ++SGT+GLP
Sbjct: 163 VASECPSLRIKLLVSEKSCDGWLNFKKLLNEASTTH-HCVETGSQEASAIYFTSGTSGLP 221
Query: 198 KGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSLNSVLLCALRVGAAIL 257
K M H + ++D L D++ + I ++ L+ +GA
Sbjct: 222 K--MAEHSYSSLGLKAKMDAGWTG--LQASDIMWTISDTGWILNILCSLMEPWALGACTF 277
Query: 258 I--MQKFDIVKLMELVQKYKVTVAPFVPPIVLAVAKSGDVDKYDMSSIRTVMSGAAPMGK 315
+ + KFD + +++ + Y + + PIV + D+ Y ++ ++ +
Sbjct: 278 VHLLPKFDPLVILKTLSSYPIK-SMMGAPIVYRMLLQQDLSSYKFPHLQNCVTVGESLLP 336
Query: 316 ELEDAVRAKLPHAKLGQGYGMTEAGPVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDP 375
E + RA+ + + YG TE G C+ + +IK G GT +++I+D
Sbjct: 337 ETLENWRAQT-GLDIRESYGQTETGLT---CM--VSKTMKIKPGYMGTAASCYDVQIID- 389
Query: 376 DTGISLPRNQAGEICIR 392
D G LP G+I IR
Sbjct: 390 DKGNVLPPGTEGDIGIR 406
>pdb|3L8C|A Chain A, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3L8C|B Chain B, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3LGX|A Chain A, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|B Chain B, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|C Chain C, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|D Chain D, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
Length = 521
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 56/235 (23%), Positives = 91/235 (38%), Gaps = 29/235 (12%)
Query: 179 INPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFH 238
+ DD + ++SGTTG PKGV ++H L++ + E+ + K+ +L P
Sbjct: 142 VKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMI--EDAAFDVPKQPQMLAQPP--- 196
Query: 239 IYSLN-SVLLCA--LRVGAAILIMQK---FDIVKLMELVQKYKVTVAPFVPPIVLAVAKS 292
YS + SV+ A L +G + + K D +L + + V + P S
Sbjct: 197 -YSFDLSVMYWAPTLALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLS 255
Query: 293 GDVDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGYGMTEAGPVLSMCLAFAKE 352
D + M ++ + + + P AK+ YG TEA LS
Sbjct: 256 DDFCQAKMPALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATVALSAI------ 309
Query: 353 PFEIKSGACGTVVR--------NAEMKIVDPDTGISLPRNQAGEICIRGAQIMKG 399
EI R ++ I+D D G L + GEI + G + KG
Sbjct: 310 --EITREMVDNYTRLPIGYPKPDSPTYIIDED-GKELSSGEQGEIIVTGPAVSKG 361
>pdb|3DHV|A Chain A, Crystal Structure Of Dlta Protein In Complex With
D-Alanine Adenylate
Length = 512
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 60/277 (21%), Positives = 109/277 (39%), Gaps = 19/277 (6%)
Query: 136 DKVRDLSEHHGARI------VTIDPPPENCLHFSEL----ITQADENEIPAVKINPDDVV 185
D+V+ ++E+ GA++ VT+ P + L T P + D+
Sbjct: 88 DRVQRIAENSGAKLLLSATAVTVTDLPVRIVSEDNLKDIFFTHKGNTPNPEHAVKGDENF 147
Query: 186 ALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSLNSV 245
+ Y+SG+TG PKGV +T+ LV+ V+ N L V L P S+ +
Sbjct: 148 YIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFN----LQTGQVFLNQAPFSFDLSVMDI 203
Query: 246 LLCALRVGAAILIMQKFDIVK---LMELVQKYKVTVAPFVPPIVLAVAKSGDVDKYDMSS 302
+L G + + K I + L +++ + V P + + +
Sbjct: 204 -YPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPN 262
Query: 303 IRTVMSGAAPMGKELEDAVRAKLPHAKLGQGYGMTEAGPVLSMCLAFAKEPFEIKSGACG 362
++T + + E+ + + P A + YG TEA ++ + + KS G
Sbjct: 263 MKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLDQYKSLPVG 322
Query: 363 TVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQIMKG 399
+ + I+ D I+ P + GEI I G + G
Sbjct: 323 YCKSDCRLLIMKEDGTIA-PDGEKGEIVIVGPSVSVG 358
>pdb|3FCC|A Chain A, Crystal Structure Of Dlta Protein In Complex With Atp And
Magnesium
pdb|3FCE|A Chain A, Crystal Structure Of Bacillus Cereus D-Alanyl Carrier
Protein Ligase Dlta In Complex With Atp: Implications
For Adenylation Mechanism
Length = 512
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 60/277 (21%), Positives = 109/277 (39%), Gaps = 19/277 (6%)
Query: 136 DKVRDLSEHHGARI------VTIDPPPENCLHFSEL----ITQADENEIPAVKINPDDVV 185
D+V+ ++E+ GA++ VT+ P + L T P + D+
Sbjct: 88 DRVQRIAENSGAKLLLSATAVTVTDLPVRIVSEDNLKDIFFTHKGNTPNPEHAVKGDENF 147
Query: 186 ALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSLNSV 245
+ Y+SG+TG PKGV +T+ LV+ V+ N L V L P S+ +
Sbjct: 148 YIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFN----LQTGQVFLNQAPFSFDLSVMDI 203
Query: 246 LLCALRVGAAILIMQKFDIVK---LMELVQKYKVTVAPFVPPIVLAVAKSGDVDKYDMSS 302
+L G + + K I + L +++ + V P + + +
Sbjct: 204 -YPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPN 262
Query: 303 IRTVMSGAAPMGKELEDAVRAKLPHAKLGQGYGMTEAGPVLSMCLAFAKEPFEIKSGACG 362
++T + + E+ + + P A + YG TEA ++ + + KS G
Sbjct: 263 MKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLDQYKSLPVG 322
Query: 363 TVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQIMKG 399
+ + I+ D I+ P + GEI I G + G
Sbjct: 323 YCKSDCRLLIMKEDGTIA-PDGEKGEIVIVGPSVSVG 358
>pdb|3E53|A Chain A, Crystal Structure Of N-Terminal Domain Of A Fatty Acyl Amp
Ligase Faal28 From Mycobacterium Tuberculosis
Length = 480
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 57/258 (22%), Positives = 102/258 (39%), Gaps = 51/258 (19%)
Query: 187 LPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKED-------VILCVLPLFHI 239
L Y+SG+T P GV+ +H+ + + Q G Y D ++ LP +H
Sbjct: 188 LQYTSGSTRTPAGVVXSHQNVRVNFEQLXSG-----YFADTDGIPPPNSALVSWLPFYHD 242
Query: 240 YSLNSVLLCALRVG-------AAILIMQKFDIVKLMELVQKYKVTVAPFVPPIVLAVAKS 292
L + +CA +G + + +Q+ + + + AP LA ++
Sbjct: 243 XGL-VIGICAPILGGYPAVLTSPVSFLQRPARWXHLXASDFHAFSAAPNF-AFELAARRT 300
Query: 293 GDVDK--YDMSSIRTVMSG-----AAPMGKELEDAVRAKLPHAKLGQGYGMTEAGPVLSM 345
D D D+ +I T++SG AA + + + R L + YG+ EA + +
Sbjct: 301 TDDDXAGRDLGNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYGLAEA--TVYV 358
Query: 346 CLAFAKEP-----FEIKSGACG----------------TVVRNAEMKIVDPDTGISLPRN 384
+ +P F+ +S + G + R+ ++IVD DT I P
Sbjct: 359 ATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYXLPRSPIVRIVDSDTCIECPDG 418
Query: 385 QAGEICIRGAQIMKGTYH 402
GEI + G + G +
Sbjct: 419 TVGEIWVHGDNVANGYWQ 436
>pdb|3T5A|A Chain A, Crystal Structure Of N-Terminal Domain Of Faal28 G330w
Mutant From Mycobacterium Tuberculosis
Length = 480
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 58/259 (22%), Positives = 105/259 (40%), Gaps = 53/259 (20%)
Query: 187 LPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKED-------VILCVLPLFHI 239
L Y+SG+T P GV+++H+ + + Q + G Y D ++ LP +H
Sbjct: 188 LQYTSGSTRTPAGVVMSHQNVRVNFEQLMSG-----YFADTDGIPPPNSALVSWLPFYHD 242
Query: 240 YSLNSVLLCALRVGA--AIL-----IMQKFDIVKLMELVQK--YKVTVAP-FVPPIVLAV 289
L + +CA +G A+L +Q+ + M L+ + + AP F +
Sbjct: 243 MGL-VIGICAPILGGYPAVLTSPVSFLQR--PARWMHLMASDFHAFSAAPNFAFELAARR 299
Query: 290 AKSGDVDKYDMSSIRTVMSG-----AAPMGKELEDAVRAKLPHAKLGQGYGMTEAGPVLS 344
D+ D+ +I T++SG AA + + + R L + Y + EA +
Sbjct: 300 TTDDDMAGRDLGNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWLAEA--TVY 357
Query: 345 MCLAFAKEP-----FEIKSGACG----------------TVVRNAEMKIVDPDTGISLPR 383
+ + +P F+ +S + G + R+ ++IVD DT I P
Sbjct: 358 VATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRSPIVRIVDSDTCIECPD 417
Query: 384 NQAGEICIRGAQIMKGTYH 402
GEI + G + G +
Sbjct: 418 GTVGEIWVHGDNVANGYWQ 436
>pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Atp From Streptomyces
pdb|3VNR|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Aminobutyric Acid And Amp From Streptomyces
pdb|3VNS|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With D-valine And Amp From Streptomyces
Length = 544
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 58/229 (25%), Positives = 103/229 (44%), Gaps = 24/229 (10%)
Query: 182 DDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLY-LHKEDVILCVLPLFHIY 240
+D+ + Y+SGTTG PKGV + H ++ +A P+++ +D L LFH
Sbjct: 175 EDMAYVIYTSGTTGNPKGVPVRHANVLALLAGA-----PSVFDFSGDDRWL----LFHSL 225
Query: 241 SLN-SV--LLCALRVGAAILIMQKFDIV---KLMELVQKYKVTVAPFVPPIVLAVAKSGD 294
S + SV + A GA ++++ + + + ++ VTV P LA+ ++
Sbjct: 226 SFDFSVWEIWGAFSTGAELVVLPHWAARTPEQYLAVIIDRGVTVINQTPTAFLALTEAAV 285
Query: 295 VDKYDMSSIRTVMSGA----APMGKELEDAVRAKLPHAKLGQGYGMTEAGPVLSMCLAFA 350
D+S +R V+ G APM + A L +L GYG+TE V +
Sbjct: 286 RGGRDVSGLRYVIFGGEKLTAPMLRPWAKAF--GLDRPRLVNGYGITET-TVFTTFEEIT 342
Query: 351 KEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQIMKG 399
+ + G + + ++V D G + + GE+ + GAQ+ +G
Sbjct: 343 EAYLAQDASIIGRALPSFGTRVVG-DDGRDVAPGETGELWLSGAQLAEG 390
>pdb|2Y4N|A Chain A, Paak1 In Complex With Phenylacetyl Adenylate
pdb|2Y4N|B Chain B, Paak1 In Complex With Phenylacetyl Adenylate
Length = 437
Score = 35.8 bits (81), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 65/145 (44%), Gaps = 11/145 (7%)
Query: 249 ALRVGAAILIMQKFDIVKLMELVQKYKVTVAPFVPPIVLAVAKSGDVDKYD--MSSIRTV 306
A R G ++ K ++L+Q ++ + P +L++A + D SS+R
Sbjct: 156 AERAGLTVIPFGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIG 215
Query: 307 MSGAAPMGKELEDAVRAKLPHAKLGQGYGMTEAGPVLSMCLAFAKEPFEIKSGACGTVVR 366
+ GA P ++ A+ ++ + YG++E M A E E K G T+
Sbjct: 216 IFGAEPWTNDMRVAIEQRMGIDAV-DIYGLSEV-----MGPGVASECVETKDGP--TIWE 267
Query: 367 NAEM-KIVDPDTGISLPRNQAGEIC 390
+ +I+DP+TG LP + GE+
Sbjct: 268 DHFYPEIIDPETGEVLPDGELGELV 292
>pdb|3E7W|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
pdb|3E7X|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
Length = 511
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 79/366 (21%), Positives = 139/366 (37%), Gaps = 48/366 (13%)
Query: 50 GDVYTYADVELTSRKVAAGLSK-LGVQKGDVIMLLLQNCPQFVFAFLGASYIGATSTTAN 108
G TY ++ S + AA + K + +K I++ P + +FLG S A
Sbjct: 24 GQSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLG-------SVKAG 76
Query: 109 PFYTPPEXXXXXXXXXXXXXXXXXVYNDKVRDLSEHHGARIV------TIDPPPENCLHF 162
Y P + + ++++ + E GA ++ +ID +
Sbjct: 77 HPYIPVDLS---------------IPSERIAKIIESSGAELLIHAAGLSIDAVGQQIQTV 121
Query: 163 S--ELITQADENEIPAVK----INPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVD 216
S EL+ ENE +V + + + Y+SG+TG PKGV ++ L S +
Sbjct: 122 SAEELL----ENEGGSVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANL-QSFTDWIC 176
Query: 217 GENPNLYLHKEDVILCVLPLFHIYSLNSVLLCALRVGAAILIMQKFDIVK---LMELVQK 273
+ P + + L P S+ + C L+ G + + K + K L E ++K
Sbjct: 177 ADFP---VSGGKIFLNQAPFSFDLSVMDLYPC-LQSGGTLHCVTKDAVNKPKVLFEELKK 232
Query: 274 YKVTVAPFVPPIVLAVAKSGDVDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQG 333
+ V P V + + T M + + A+ + P AK+
Sbjct: 233 SGLNVWTSTPSFVQMCLMDPGFSQDLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNT 292
Query: 334 YGMTEAGPVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRG 393
YG TEA ++ +S G + + I+D + G LP + GEI I G
Sbjct: 293 YGPTEATVAVTSVEITNDVISRSESLPVGFAKPDMNIFIMD-EEGQPLPEGEKGEIVIAG 351
Query: 394 AQIMKG 399
+ +G
Sbjct: 352 PSVSRG 357
>pdb|2Y27|A Chain A, Crystal Structure Of Paak1 In Complex With Atp From
Burkholderia Cenocepacia
pdb|2Y27|B Chain B, Crystal Structure Of Paak1 In Complex With Atp From
Burkholderia Cenocepacia
Length = 437
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 64/148 (43%), Gaps = 17/148 (11%)
Query: 249 ALRVGAAILIMQKFDIVKLMELVQKYKVTVAPFVPPIVLAVAKSGDVDKYD--MSSIRTV 306
A R G ++ K ++L+Q ++ + P L++A + D SS+R
Sbjct: 156 AERAGLTVIPFGGGQTEKQVQLIQDFRPDIIXVTPSYXLSIADEIERQGLDPVQSSLRIG 215
Query: 307 MSGAAPMGKELEDAV--RAKLPHAKLGQGYGMTE-AGPVLSMCLAFAKEPFEIKSGACGT 363
+ GA P + A+ R + + YG++E GP A E E K G T
Sbjct: 216 IFGAEPWTNDXRVAIEQRXGIDAVDI---YGLSEVXGP------GVASECVETKDGP--T 264
Query: 364 VVRNAEM-KIVDPDTGISLPRNQAGEIC 390
+ + +I+DP+TG LP + GE+
Sbjct: 265 IWEDHFYPEIIDPETGEVLPDGELGELV 292
>pdb|3UXA|A Chain A, Designed Protein Ke59 R1 710H
pdb|3UXA|B Chain B, Designed Protein Ke59 R1 710H
pdb|3UXD|A Chain A, Designed Protein Ke59 R1 710H WITH DICHLOROBENZOTRIAZOLE
(DBT)
pdb|3UXD|B Chain B, Designed Protein Ke59 R1 710H WITH DICHLOROBENZOTRIAZOLE
(DBT)
Length = 252
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 248 CALRVGAAILIMQKFDIVKLMELVQKYKVTVAPFVPPIVLAVAKSGDVDKYDMSSIRTVM 307
ALR+GA I+I+ D+ + +E+ ++ + + +P V+ VA SG ++ ++ +R +
Sbjct: 168 IALRIGARIIIISSRDL-ETLEINKENQRKLISMIPSNVVKVAASGISERNEIEELRKLG 226
Query: 308 SGAAPMGKEL 317
A +G L
Sbjct: 227 VNAFEIGSSL 236
>pdb|3UY7|A Chain A, Designed Protein Ke59 R1 710H WITH G130S MUTATION
pdb|3UY7|B Chain B, Designed Protein Ke59 R1 710H WITH G130S MUTATION
Length = 252
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 248 CALRVGAAILIMQKFDIVKLMELVQKYKVTVAPFVPPIVLAVAKSGDVDKYDMSSIRTVM 307
ALR+GA I+I+ D+ + +E+ ++ + + +P V+ VA SG ++ ++ +R +
Sbjct: 168 IALRIGARIIIISSRDL-ETLEINKENQRKLISMIPSNVVKVAASGISERNEIEELRKLG 226
Query: 308 SGAAPMGKEL 317
A +G L
Sbjct: 227 VNAFEIGSSL 236
>pdb|4DG8|A Chain A, Structure Of Pa1221, An Nrps Protein Containing
Adenylation And Pcp Domains
pdb|4DG9|A Chain A, Structure Of Holo-Pa1221, An Nrps Protein Containing
Adenylation And Pcp Domains Bound To Vinylsulfonamide
Inhibitor
Length = 620
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 49/222 (22%), Positives = 84/222 (37%), Gaps = 16/222 (7%)
Query: 182 DDVVALPYSSGTTGLPKGVMLTHKGLVT-SVAQQVDGENPNLYLHKEDVILCVLPLFHIY 240
D + + +SSGTTG PK + TH G+ + Q P + L PL
Sbjct: 164 DQIAYINFSSGTTGRPKAIACTHAGITRLCLGQSFLAFAPQMR------FLVNSPLSFDA 217
Query: 241 SLNSVLLCALRVGAAIL-IMQKFDIVKLMELVQKYKVTVAPFVPPIVLAVAKSGDVDKYD 299
+ + L G +L + D L +L+ + A + + D+D
Sbjct: 218 ATLEIWGALLNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLV---DLDPDC 274
Query: 300 MSSIRTVMSGAAPMGKELEDAVRAKLPHAKLG--QGYGMTEAGPVLSMCLAFAKEPFEIK 357
+ +R +++G + + RA L H +L GYG TE + C + E
Sbjct: 275 LGGLRQLLTGGDIL--SVPHVRRALLRHPRLHLVNGYGPTE-NTTFTCCHVVTDDDLEED 331
Query: 358 SGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQIMKG 399
G + + ++D ++AGEI GA + +G
Sbjct: 332 DIPIGKAIAGTAVLLLDEHGQEIAEPDRAGEIVAFGAGLAQG 373
>pdb|2Y4O|A Chain A, Crystal Structure Of Paak2 In Complex With Phenylacetyl
Adenylate
pdb|2Y4O|B Chain B, Crystal Structure Of Paak2 In Complex With Phenylacetyl
Adenylate
Length = 443
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 87/218 (39%), Gaps = 24/218 (11%)
Query: 182 DDVVALPYSSGTTGLPKGVMLTHKGL-----VTSVAQQVDGENPNLYLHKEDVILCVLPL 236
+ VV + SSGTTG P V T + + VT+ + + G P LH
Sbjct: 92 EQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGG 151
Query: 237 FHIYSLNSVLLCALRVGAAILIMQKFDIVKLMELVQKYKVTVAPFVPPIVLAVAKSGDVD 296
I+ A R+G ++ M K ++L++ ++ + P +L +
Sbjct: 152 LGIH------YGAERLGCMVVPMSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQ 205
Query: 297 KYD--MSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGYGMTEAGPVLSMCLAFAKEPF 354
D SS++ + GA P + L + V ++ L YG++E M A E
Sbjct: 206 GMDPAESSLKIGIFGAEPWTQALRNEVETRVGIDAL-DIYGLSEV-----MGPGVACECV 259
Query: 355 EIKSGACGTVVRNAEM--KIVDPDTGISLPRNQAGEIC 390
E K G V+ +I+DP TG LP GE+
Sbjct: 260 ETKDGP---VIWEDHFYPEIIDPVTGEVLPDGSQGELV 294
>pdb|2BWX|A Chain A, His354ala Escherichia Coli Aminopeptidase P
Length = 441
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 63 RKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIG 101
R + +GL KLG+ KGDV L+ QN + F ++++G
Sbjct: 320 RIMVSGLVKLGILKGDVDELIAQNAHRPFFMHGLSAWLG 358
>pdb|3DSQ|A Chain A, Structure Of Desulfitobacterium Hafniense Pylsc, A
Pyrrolysyl Trna Synthetase
pdb|3DSQ|B Chain B, Structure Of Desulfitobacterium Hafniense Pylsc, A
Pyrrolysyl Trna Synthetase
Length = 288
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 7/91 (7%)
Query: 315 KELEDAVRAKLPHAKLGQGYGMTEAGPVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVD 374
+ LED R L A + + +TE+ V + K E+ SGA G + + +I D
Sbjct: 189 QRLEDMARWVLEAAGIREFELVTESSVVYGDTVDVMKGDLELASGAMGPHFLDEKWEIFD 248
Query: 375 PDTGISLPRNQAGEICIRGAQIMKGTYHIYA 405
P G+ G R I +GT H+ +
Sbjct: 249 PWVGL-------GFGLERLLMIREGTQHVQS 272
>pdb|2ZNI|A Chain A, Crystal Structure Of Pyrrolysyl-Trna Synthetase-Trna(Pyl)
Complex From Desulfitobacterium Hafniense
pdb|2ZNI|B Chain B, Crystal Structure Of Pyrrolysyl-Trna Synthetase-Trna(Pyl)
Complex From Desulfitobacterium Hafniense
pdb|2ZNJ|A Chain A, Crystal Structure Of Pyrrolysyl-Trna Synthetase From
Desulfitobacterium Hafniense
pdb|2ZNJ|B Chain B, Crystal Structure Of Pyrrolysyl-Trna Synthetase From
Desulfitobacterium Hafniense
pdb|2ZNJ|C Chain C, Crystal Structure Of Pyrrolysyl-Trna Synthetase From
Desulfitobacterium Hafniense
Length = 308
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 7/91 (7%)
Query: 315 KELEDAVRAKLPHAKLGQGYGMTEAGPVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVD 374
+ LED R L A + + +TE+ V + K E+ SGA G + + +I D
Sbjct: 209 QRLEDMARWVLEAAGIREFELVTESSVVYGDTVDVMKGDLELASGAMGPHFLDEKWEIFD 268
Query: 375 PDTGISLPRNQAGEICIRGAQIMKGTYHIYA 405
P G+ G R I +GT H+ +
Sbjct: 269 PWVGL-------GFGLERLLMIREGTQHVQS 292
>pdb|3QOV|A Chain A, Crystal Structure Of A Hypothetical Acyl-Coa Ligase
(Bt_0428) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.20 A Resolution
pdb|3QOV|B Chain B, Crystal Structure Of A Hypothetical Acyl-Coa Ligase
(Bt_0428) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.20 A Resolution
pdb|3QOV|C Chain C, Crystal Structure Of A Hypothetical Acyl-Coa Ligase
(Bt_0428) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.20 A Resolution
pdb|3QOV|D Chain D, Crystal Structure Of A Hypothetical Acyl-Coa Ligase
(Bt_0428) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.20 A Resolution
pdb|3S89|A Chain A, Crystal Structure Of A Hypothetical Acyl-Coa Ligase
(Bt_0428) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.41 A Resolution
pdb|3S89|B Chain B, Crystal Structure Of A Hypothetical Acyl-Coa Ligase
(Bt_0428) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.41 A Resolution
pdb|3S89|C Chain C, Crystal Structure Of A Hypothetical Acyl-Coa Ligase
(Bt_0428) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.41 A Resolution
pdb|3S89|D Chain D, Crystal Structure Of A Hypothetical Acyl-Coa Ligase
(Bt_0428) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.41 A Resolution
Length = 436
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 46/213 (21%), Positives = 86/213 (40%), Gaps = 15/213 (7%)
Query: 183 DVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSL 242
D V + SSGTTG P ++ + L S A V + + K DV
Sbjct: 87 DGVRIHSSSGTTGNPTVIVHSQHDL-DSWANLVARCLYXVGIRKTDVFQNSSGYGXFTGG 145
Query: 243 NSVLLCALRVGAAILIMQKFDIVKLMELVQKYKVTVAPFVPPIVLAVAKSGDVDKYD--M 300
A R+G + + + ++ + +K T +P + +A+ + D
Sbjct: 146 LGFQYGAERLGCLTVPAAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRE 205
Query: 301 SSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGYGMTEA-GPVLSMCLAFAKEPFEIKSG 359
++++T++ GA P E + L + K +G TE GP ++ FE +
Sbjct: 206 TTLKTLVIGAEPHTDEQRRKIERXL-NVKAYNSFGXTEXNGPGVA---------FECQEQ 255
Query: 360 ACGTVVRNAEM-KIVDPDTGISLPRNQAGEICI 391
+ + +I+DP+TG +P + GE+ +
Sbjct: 256 NGXHFWEDCYLVEIIDPETGEPVPEGEIGELVL 288
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,846,757
Number of Sequences: 62578
Number of extensions: 470012
Number of successful extensions: 1223
Number of sequences better than 100.0: 70
Number of HSP's better than 100.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1063
Number of HSP's gapped (non-prelim): 105
length of query: 415
length of database: 14,973,337
effective HSP length: 101
effective length of query: 314
effective length of database: 8,652,959
effective search space: 2717029126
effective search space used: 2717029126
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)